Query 000124
Match_columns 2138
No_of_seqs 503 out of 3177
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 17:58:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000124.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000124hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3now_A UNC-45 protein, SD10334 100.0 4.5E-44 1.5E-48 473.6 44.3 689 127-892 8-739 (810)
2 3now_A UNC-45 protein, SD10334 100.0 6.4E-42 2.2E-46 453.1 64.8 708 36-841 3-782 (810)
3 1jdh_A Beta-catenin; beta-cate 100.0 6.6E-35 2.3E-39 371.8 41.9 506 83-707 16-529 (529)
4 1jdh_A Beta-catenin; beta-cate 100.0 1.9E-34 6.4E-39 367.7 44.6 508 122-792 14-528 (529)
5 2z6g_A B-catenin; FULL-length, 100.0 1.5E-34 5.1E-39 388.7 45.8 543 84-797 115-666 (780)
6 2z6g_A B-catenin; FULL-length, 100.0 2.2E-34 7.4E-39 387.2 43.5 564 40-781 116-689 (780)
7 2z6h_A Catenin beta-1, beta-ca 100.0 4.2E-34 1.4E-38 376.6 45.0 528 83-778 13-550 (644)
8 2z6h_A Catenin beta-1, beta-ca 100.0 1.2E-33 4.2E-38 372.1 45.1 510 122-796 11-529 (644)
9 3ul1_B Importin subunit alpha- 100.0 1.4E-30 4.7E-35 334.4 36.7 414 433-891 58-479 (510)
10 3tpo_A Importin subunit alpha- 100.0 6.9E-30 2.4E-34 329.2 37.9 414 433-891 77-498 (529)
11 3ul1_B Importin subunit alpha- 100.0 2.1E-29 7.1E-34 323.5 36.7 397 393-795 60-479 (510)
12 3tpo_A Importin subunit alpha- 100.0 9.1E-29 3.1E-33 318.7 37.5 396 393-794 79-497 (529)
13 4b8j_A Importin subunit alpha- 100.0 3.8E-28 1.3E-32 311.5 39.5 403 432-842 74-497 (528)
14 3l6x_A Catenin delta-1; cateni 100.0 1.5E-28 5.3E-33 316.5 33.6 361 430-797 46-479 (584)
15 4b8j_A Importin subunit alpha- 100.0 1.5E-27 5E-32 306.1 38.0 397 392-795 76-497 (528)
16 1xm9_A Plakophilin 1; armadill 100.0 2.9E-28 9.8E-33 308.9 31.0 358 433-797 3-452 (457)
17 1wa5_B Importin alpha subunit; 100.0 2.6E-27 8.9E-32 304.4 40.0 404 431-842 86-511 (530)
18 3nmz_A APC variant protein; pr 100.0 5.2E-28 1.8E-32 305.3 30.4 362 393-797 35-453 (458)
19 2jdq_A Importin alpha-1 subuni 100.0 2.8E-27 9.5E-32 295.1 36.0 400 433-841 21-443 (450)
20 3l6x_A Catenin delta-1; cateni 100.0 2.6E-27 8.7E-32 305.2 36.3 374 384-766 43-489 (584)
21 1wa5_B Importin alpha subunit; 100.0 3.7E-27 1.3E-31 303.0 37.6 402 391-796 88-512 (530)
22 2jdq_A Importin alpha-1 subuni 100.0 4.3E-27 1.5E-31 293.3 34.0 397 392-796 22-445 (450)
23 1xm9_A Plakophilin 1; armadill 99.9 1.5E-26 5.1E-31 293.3 31.0 361 475-844 3-452 (457)
24 3nmz_A APC variant protein; pr 99.9 2E-26 6.9E-31 290.9 29.3 392 217-712 33-454 (458)
25 3opb_A SWI5-dependent HO expre 99.9 3.1E-24 1.1E-28 279.7 32.4 488 422-931 244-773 (778)
26 3nmw_A APC variant protein; AR 99.9 6E-24 2E-28 260.9 23.9 275 486-797 44-337 (354)
27 3nmw_A APC variant protein; AR 99.9 2.4E-23 8.1E-28 255.6 27.0 272 407-712 48-338 (354)
28 3opb_A SWI5-dependent HO expre 99.9 2.6E-19 8.8E-24 233.8 50.6 544 173-823 170-760 (778)
29 4fdd_A Transportin-1; heat rep 99.9 4.2E-19 1.4E-23 240.9 48.1 704 36-894 10-788 (852)
30 4hxt_A De novo protein OR329; 99.8 3.3E-20 1.1E-24 212.8 23.8 241 474-754 2-242 (252)
31 4hxt_A De novo protein OR329; 99.8 6.5E-20 2.2E-24 210.3 25.4 241 432-709 2-242 (252)
32 1b3u_A Protein (protein phosph 99.8 6.6E-18 2.3E-22 217.3 43.6 568 127-793 12-586 (588)
33 4db8_A Armadillo-repeat protei 99.8 8.4E-20 2.9E-24 210.9 21.7 240 474-753 12-251 (252)
34 1b3u_A Protein (protein phosph 99.8 1.3E-17 4.4E-22 214.6 44.1 569 86-752 12-586 (588)
35 4db8_A Armadillo-repeat protei 99.8 1.1E-19 3.7E-24 209.9 22.3 240 432-708 12-251 (252)
36 4fdd_A Transportin-1; heat rep 99.8 3.1E-16 1.1E-20 212.7 52.7 687 51-797 58-787 (852)
37 1u6g_C TIP120 protein, CAND1; 99.8 1.8E-13 6.2E-18 192.8 69.1 1076 217-1550 7-1191(1230)
38 1u6g_C TIP120 protein, CAND1; 99.8 4.7E-14 1.6E-18 198.7 61.5 688 39-777 6-745 (1230)
39 2bpt_A Importin beta-1 subunit 99.8 3.7E-14 1.3E-18 191.1 56.2 738 40-840 5-856 (861)
40 4db6_A Armadillo repeat protei 99.7 4.7E-17 1.6E-21 182.9 21.4 200 472-708 10-209 (210)
41 1qgr_A Protein (importin beta 99.7 4.7E-14 1.6E-18 190.5 54.0 770 41-930 3-866 (876)
42 2bpt_A Importin beta-1 subunit 99.7 1.6E-13 5.4E-18 185.0 58.0 732 88-915 8-835 (861)
43 4db6_A Armadillo repeat protei 99.7 9.4E-17 3.2E-21 180.5 20.6 200 387-587 9-209 (210)
44 3tt9_A Plakophilin-2; cell adh 99.7 2E-16 6.8E-21 183.1 18.2 198 41-245 10-229 (233)
45 2dmh_A Myoferlin; beta-sandwic 99.7 4.6E-17 1.6E-21 173.4 11.5 126 2007-2135 4-137 (140)
46 3tt9_A Plakophilin-2; cell adh 99.7 3.4E-16 1.2E-20 181.2 17.2 195 433-666 9-229 (233)
47 1qgr_A Protein (importin beta 99.7 7.6E-13 2.6E-17 178.7 48.8 698 42-794 38-871 (876)
48 1rlw_A Phospholipase A2, CALB 99.6 1.9E-16 6.5E-21 165.4 9.7 117 2009-2131 2-125 (126)
49 1xqr_A HSPBP1 protein; armadil 99.6 1.5E-14 5.3E-19 173.4 22.2 202 36-246 25-239 (296)
50 2fk9_A Protein kinase C, ETA t 99.6 4.5E-16 1.6E-20 169.9 7.4 115 2006-2130 25-156 (157)
51 1xqr_A HSPBP1 protein; armadil 99.6 1.1E-14 3.7E-19 174.7 18.3 182 407-588 56-239 (296)
52 2ep6_A MCTP2 protein; beta san 99.6 1.7E-15 5.9E-20 160.0 9.7 117 2009-2130 12-131 (133)
53 1wfj_A Putative elicitor-respo 99.6 1.2E-15 4.2E-20 161.5 7.0 121 2008-2134 8-133 (136)
54 3b7y_A E3 ubiquitin-protein li 99.6 4.4E-15 1.5E-19 160.5 11.2 123 2007-2131 17-153 (153)
55 3kwu_A MUNC13-1; calcium bindi 99.6 7.9E-15 2.7E-19 157.7 11.6 117 2009-2130 16-146 (148)
56 3m7f_B E3 ubiquitin-protein li 99.5 6.9E-15 2.4E-19 163.1 9.9 122 2009-2132 7-142 (176)
57 1gmi_A Protein kinase C, epsil 99.5 3.1E-15 1.1E-19 158.9 6.7 115 2007-2131 3-133 (136)
58 1v27_A Regulating synaptic mem 99.5 1.1E-14 3.6E-19 155.0 10.8 108 2009-2119 20-138 (141)
59 2vgl_B AP-2 complex subunit be 99.5 1.2E-11 4E-16 161.9 40.5 363 391-794 161-532 (591)
60 3pyc_A E3 ubiquitin-protein li 99.5 9.3E-15 3.2E-19 154.2 8.8 118 2009-2129 4-131 (132)
61 3rdl_A Protein kinase C alpha 99.5 3.4E-15 1.2E-19 158.0 4.9 112 2009-2123 15-133 (137)
62 1a25_A CALB, protein kinase C 99.5 4.9E-15 1.7E-19 159.7 5.4 111 2008-2121 29-146 (149)
63 3fbk_A RGS3, RGP3, regulator o 99.5 7.8E-15 2.7E-19 159.1 6.9 115 2008-2124 25-147 (153)
64 3grl_A General vesicular trans 99.5 3.1E-11 1.1E-15 154.7 40.8 460 35-542 17-547 (651)
65 2d8k_A Synaptotagmin VII; exoc 99.5 1.6E-14 5.4E-19 154.2 8.1 111 2008-2118 24-141 (141)
66 2vgl_B AP-2 complex subunit be 99.5 1.3E-11 4.6E-16 161.3 36.0 510 217-841 14-532 (591)
67 2bwq_A Regulating synaptic mem 99.5 1.5E-14 5E-19 151.8 6.4 101 2009-2110 17-128 (129)
68 2b3r_A Phosphatidylinositol-4- 99.5 2.2E-14 7.7E-19 152.2 7.9 108 2006-2113 16-131 (134)
69 1wfm_A Synaptotagmin XIII; C2 99.5 5.8E-14 2E-18 149.7 9.6 105 2008-2113 24-133 (138)
70 2nq3_A Itchy homolog E3 ubiqui 99.5 3.1E-14 1.1E-18 158.0 7.7 122 2005-2130 31-160 (173)
71 1rsy_A Synaptotagmin I; calciu 99.5 3.9E-14 1.3E-18 153.3 7.1 106 2008-2113 40-151 (152)
72 3f04_A Synaptotagmin-1; C2A, c 99.5 5.3E-14 1.8E-18 150.4 7.7 105 2008-2112 32-142 (143)
73 1oyz_A Hypothetical protein YI 99.5 1.8E-12 6.3E-17 152.5 21.0 254 471-790 20-278 (280)
74 2enp_A B/K protein; C2 type 1, 99.4 7.1E-14 2.4E-18 150.2 8.0 106 2008-2113 24-142 (147)
75 1rh8_A Piccolo protein; beta-s 99.4 2.2E-14 7.6E-19 153.0 4.0 109 2005-2113 13-139 (142)
76 1oyz_A Hypothetical protein YI 99.4 3.9E-12 1.3E-16 149.7 23.3 254 514-836 21-277 (280)
77 2q3x_A Regulating synaptic mem 99.4 6.1E-14 2.1E-18 155.0 6.6 104 2008-2113 28-140 (171)
78 2dmg_A KIAA1228 protein; beta- 99.4 7.7E-14 2.6E-18 148.9 7.2 104 2009-2113 23-136 (142)
79 3fdw_A Synaptotagmin-like prot 99.4 5.3E-14 1.8E-18 151.5 5.3 110 2009-2118 22-140 (148)
80 3l9b_A Otoferlin; C2-domain, b 99.4 1.3E-13 4.5E-18 145.9 6.8 116 2011-2131 22-140 (144)
81 1ugk_A Synaptotagmin IV, KIAA1 99.4 3E-13 1E-17 143.8 8.7 106 2008-2113 20-134 (138)
82 2z0u_A WW domain-containing pr 99.4 7.3E-14 2.5E-18 152.2 3.3 105 2008-2112 41-155 (155)
83 1w15_A Synaptotagmin IV; metal 99.4 1.3E-13 4.4E-18 149.2 4.9 104 2008-2113 28-139 (153)
84 1w63_A Adapter-related protein 99.4 1.9E-09 6.4E-14 141.9 44.4 436 394-888 111-575 (618)
85 2cm5_A Rabphilin-3A; protein t 99.4 2.1E-13 7.3E-18 149.6 5.5 104 2008-2113 35-146 (166)
86 2chd_A Rabphilin-3A, exophilin 99.4 2.2E-13 7.4E-18 145.4 5.2 103 2008-2110 27-138 (142)
87 2r83_A Synaptotagmin-1; C2A-C2 99.4 1.3E-12 4.3E-17 155.2 12.2 125 2008-2132 17-148 (284)
88 1w63_A Adapter-related protein 99.4 2.3E-09 8E-14 141.0 44.0 496 125-762 70-586 (618)
89 2cjt_A UNC-13 homolog A, MUNC1 99.4 9.8E-13 3.3E-17 139.4 9.4 86 2010-2102 5-92 (131)
90 3n5a_A Synaptotagmin-7; calciu 99.4 2E-13 6.9E-18 144.5 3.9 103 2009-2113 15-125 (138)
91 3nsj_A Perforin-1; pore formin 99.3 1E-12 3.4E-17 168.6 10.1 98 2011-2113 395-494 (540)
92 1tjx_A Similar to synaptotagmi 99.3 8.1E-13 2.8E-17 143.9 6.1 90 2008-2097 23-120 (159)
93 3grl_A General vesicular trans 99.3 6E-09 2E-13 133.9 41.9 401 393-820 63-527 (651)
94 3jzy_A Intersectin 2; C2 domai 99.3 4E-12 1.4E-16 163.1 8.4 119 2006-2129 383-508 (510)
95 3ltm_A Alpha-REP4; protein eng 99.3 9.3E-11 3.2E-15 132.2 18.4 188 557-796 18-205 (211)
96 2cjs_A UNC-13 homolog A, MUNC1 99.3 3.4E-12 1.2E-16 140.8 6.3 88 2009-2102 13-101 (167)
97 3ltm_A Alpha-REP4; protein eng 99.2 1.5E-10 5E-15 130.6 18.3 187 472-708 17-203 (211)
98 3ltj_A Alpharep-4; protein eng 99.2 1.6E-10 5.5E-15 129.3 18.5 187 472-708 12-198 (201)
99 3ltj_A Alpharep-4; protein eng 99.2 3.2E-10 1.1E-14 126.8 19.6 185 558-794 14-198 (201)
100 1dqv_A Synaptotagmin III; beta 99.2 2.1E-11 7.3E-16 146.0 9.2 124 2008-2131 18-149 (296)
101 1ibr_B P95, importin beta-1 su 99.2 5.1E-09 1.7E-13 130.5 29.2 378 479-892 6-439 (462)
102 1cjy_A CPLA2, protein (cytosol 99.1 2E-11 6.8E-16 161.0 6.4 105 2008-2113 16-127 (749)
103 1ibr_B P95, importin beta-1 su 99.1 1.7E-08 5.7E-13 125.8 31.1 389 220-708 5-437 (462)
104 3bxj_A RAS GTPase-activating p 99.0 2.3E-11 7.8E-16 155.3 0.5 99 2009-2113 10-117 (483)
105 2r83_A Synaptotagmin-1; C2A-C2 99.0 1.4E-10 4.8E-15 137.7 7.2 90 2009-2098 149-246 (284)
106 1djx_A PLC-D1, phosphoinositid 99.0 2.8E-10 9.4E-15 149.1 8.2 117 2007-2130 494-623 (624)
107 1dqv_A Synaptotagmin III; beta 99.0 7.1E-11 2.4E-15 141.5 1.5 104 2009-2113 151-262 (296)
108 2vgl_A Adaptor protein complex 98.9 6E-06 2E-10 108.8 43.9 481 83-665 73-588 (621)
109 2vgl_A Adaptor protein complex 98.9 8.1E-06 2.8E-10 107.5 44.0 512 100-754 55-590 (621)
110 3pfq_A PKC-B, PKC-beta, protei 98.9 1.4E-09 4.9E-14 144.3 6.7 105 2008-2113 170-281 (674)
111 4ady_A RPN2, 26S proteasome re 98.8 0.00011 3.9E-09 98.8 50.7 338 439-840 365-718 (963)
112 4ady_A RPN2, 26S proteasome re 98.7 0.00015 5E-09 97.7 46.8 324 407-793 374-718 (963)
113 2zkm_X 1-phosphatidylinositol- 98.5 7.8E-08 2.7E-12 129.0 9.0 111 2008-2128 676-796 (799)
114 3qr0_A Phospholipase C-beta (P 98.5 7.2E-08 2.4E-12 128.7 8.5 115 2007-2131 647-771 (816)
115 3ohm_B 1-phosphatidylinositol- 98.5 8.4E-08 2.9E-12 128.7 9.0 114 2008-2131 723-845 (885)
116 4gmo_A Putative uncharacterize 98.3 1.6E-06 5.5E-11 115.4 12.6 194 638-840 35-257 (684)
117 4gmo_A Putative uncharacterize 98.2 1.1E-05 3.8E-10 107.4 16.8 197 390-588 35-259 (684)
118 3b2a_A TON_1937, putative unch 98.0 0.00014 4.7E-09 82.8 17.5 216 557-791 32-258 (265)
119 1te4_A Conserved protein MTH18 97.9 1.1E-06 3.9E-11 92.1 -0.4 121 636-792 11-131 (131)
120 2x1g_F Cadmus; transport prote 97.9 0.033 1.1E-06 76.8 42.3 694 93-840 16-857 (971)
121 2qk2_A LP04448P; mini spindles 97.8 0.0001 3.6E-09 84.9 13.8 145 638-795 57-206 (242)
122 1te4_A Conserved protein MTH18 97.8 2.6E-06 8.9E-11 89.3 -0.3 121 557-706 11-131 (131)
123 2db0_A 253AA long hypothetical 97.8 0.0028 9.6E-08 69.5 22.7 211 557-794 31-246 (253)
124 2qk2_A LP04448P; mini spindles 97.8 0.00042 1.4E-08 79.8 18.0 179 562-753 19-205 (242)
125 2x19_B Importin-13; nuclear tr 97.8 0.4 1.4E-05 65.9 61.5 711 31-841 18-846 (963)
126 1wa5_C Importin alpha RE-expor 97.7 0.098 3.4E-06 72.2 42.8 539 43-666 39-670 (960)
127 3b2a_A TON_1937, putative unch 97.6 0.00037 1.3E-08 79.4 13.5 212 473-699 32-252 (265)
128 3tjz_B Coatomer subunit gamma; 97.6 0.0014 4.8E-08 80.4 19.4 277 436-748 72-348 (355)
129 2enj_A NPKC-theta, protein kin 97.4 0.00018 6.2E-09 75.5 6.1 110 2010-2132 10-131 (138)
130 3tjz_B Coatomer subunit gamma; 97.3 0.0024 8.4E-08 78.2 17.0 269 593-914 69-347 (355)
131 1wa5_C Importin alpha RE-expor 97.3 1.2 4.2E-05 61.3 47.7 518 194-795 23-671 (960)
132 1yrk_A NPKC-delta, protein kin 97.3 0.00022 7.5E-09 74.0 6.5 107 2010-2129 6-123 (126)
133 2qk1_A Protein STU2; STU2P, XM 97.2 0.0034 1.2E-07 73.3 16.1 184 563-752 21-219 (249)
134 2qk1_A Protein STU2; STU2P, XM 97.2 0.0018 6.3E-08 75.6 13.6 186 437-622 21-221 (249)
135 3ibv_A Exportin-T; karyopherin 97.2 1.9 6.5E-05 59.7 51.0 225 38-289 5-261 (980)
136 2x1g_F Cadmus; transport prote 97.1 0.71 2.4E-05 63.6 39.2 133 649-796 476-617 (971)
137 2db0_A 253AA long hypothetical 97.0 0.098 3.3E-06 57.7 22.5 213 472-708 30-246 (253)
138 2iw3_A Elongation factor 3A; a 96.8 0.044 1.5E-06 75.0 22.8 289 441-751 23-322 (986)
139 1ho8_A Vacuolar ATP synthase s 96.8 0.13 4.4E-06 64.8 25.0 354 83-504 76-477 (480)
140 1lrv_A LRV, leucine-rich repea 96.8 0.0012 4E-08 77.2 6.1 185 481-789 57-241 (244)
141 2iw3_A Elongation factor 3A; a 96.7 0.11 3.8E-06 71.1 25.6 295 479-795 19-325 (986)
142 1ho8_A Vacuolar ATP synthase s 96.6 0.096 3.3E-06 66.0 21.4 248 445-708 181-476 (480)
143 3m1i_C Exportin-1; heat repeat 96.5 0.8 2.7E-05 63.8 33.1 493 93-623 25-620 (1049)
144 3m1i_C Exportin-1; heat repeat 96.2 7.3 0.00025 54.3 39.8 492 226-753 26-618 (1049)
145 3dad_A FH1/FH2 domain-containi 96.1 0.092 3.2E-06 63.3 17.0 155 86-248 120-289 (339)
146 3dad_A FH1/FH2 domain-containi 96.0 0.12 4.2E-06 62.3 17.6 147 396-543 124-284 (339)
147 2x19_B Importin-13; nuclear tr 96.0 8.5 0.00029 52.7 61.9 344 526-892 459-848 (963)
148 1lrv_A LRV, leucine-rich repea 95.8 0.0043 1.5E-07 72.4 3.8 186 439-749 57-242 (244)
149 3oc3_A Helicase MOT1, MOT1; re 94.4 0.44 1.5E-05 60.4 15.5 217 638-889 175-403 (800)
150 4hat_C Exportin-1; heat repeat 93.9 31 0.0011 48.0 39.0 502 218-753 18-618 (1023)
151 4hat_C Exportin-1; heat repeat 93.5 35 0.0012 47.5 50.2 226 86-339 18-263 (1023)
152 3ibv_A Exportin-T; karyopherin 91.4 59 0.002 45.1 38.9 509 391-960 8-585 (980)
153 2of3_A ZYG-9; multifunctional 90.9 5.7 0.00019 46.8 17.9 170 519-708 49-236 (266)
154 4ffb_C Protein STU2; tubulin f 90.8 2 7E-05 50.2 14.2 148 639-795 57-213 (278)
155 4ffb_C Protein STU2; tubulin f 90.5 7 0.00024 45.6 18.5 190 89-288 14-212 (278)
156 1upk_A MO25 protein; transfera 90.3 11 0.00038 45.5 19.8 195 470-666 74-283 (341)
157 1lsh_A Lipovitellin (LV-1N, LV 89.9 6 0.0002 55.3 19.8 200 561-796 359-578 (1056)
158 2of3_A ZYG-9; multifunctional 89.8 2.1 7.2E-05 50.5 13.0 132 603-752 98-235 (266)
159 3gjx_A Exportin-1; transport, 89.1 92 0.0031 43.6 37.4 226 86-339 30-275 (1073)
160 3oc3_A Helicase MOT1, MOT1; re 88.2 1.4 4.9E-05 56.0 10.3 239 476-749 176-432 (800)
161 3a6p_A Exportin-5; exportin-5, 87.9 1.1E+02 0.0039 43.2 37.0 144 33-204 5-163 (1204)
162 3l9t_A Putative uncharacterize 86.5 5.6 0.00019 45.9 13.3 144 592-762 71-217 (240)
163 1lsh_A Lipovitellin (LV-1N, LV 84.7 18 0.00062 50.5 19.8 202 590-842 354-577 (1056)
164 3l9t_A Putative uncharacterize 81.9 7.8 0.00027 44.8 11.8 139 522-677 77-218 (240)
165 1upk_A MO25 protein; transfera 81.6 69 0.0024 38.8 20.2 202 427-631 73-293 (341)
166 3ebb_A Phospholipase A2-activa 81.4 26 0.00089 42.0 16.7 141 641-785 151-297 (304)
167 3u0r_A Apoptosis inhibitor 5; 81.0 27 0.00092 44.2 16.9 163 569-751 39-204 (507)
168 3u0r_A Apoptosis inhibitor 5; 80.5 4.7 0.00016 50.8 10.1 122 527-664 39-161 (507)
169 2fv2_A RCD1 required for cell 76.9 26 0.0009 40.9 14.1 165 416-585 81-266 (268)
170 3ebb_A Phospholipase A2-activa 73.1 74 0.0025 38.1 17.4 174 393-569 106-287 (304)
171 3c2g_A SYS-1 protein; beta-cat 68.9 30 0.001 41.6 12.2 135 100-242 259-400 (619)
172 2f31_A Diaphanous protein homo 67.0 1.1E+02 0.0038 35.0 16.6 76 430-505 41-127 (233)
173 3eg5_B Protein diaphanous homo 65.6 1.7E+02 0.006 36.0 19.0 114 431-544 108-245 (383)
174 2f31_A Diaphanous protein homo 64.7 2E+02 0.0067 32.8 18.9 145 83-232 42-215 (233)
175 2fv2_A RCD1 required for cell 62.3 2.4E+02 0.0082 33.1 21.4 140 407-547 17-176 (268)
176 3eg5_B Protein diaphanous homo 60.7 3.1E+02 0.01 33.8 21.1 179 42-228 69-276 (383)
177 2bnx_A Diaphanous protein homo 55.3 2.6E+02 0.009 34.4 18.1 113 431-543 46-182 (386)
178 2yrb_A Protein fantom; beta sa 54.2 16 0.00055 39.6 6.0 127 2007-2134 15-153 (156)
179 3c2g_A SYS-1 protein; beta-cat 50.7 1.9E+02 0.0064 35.1 14.4 124 418-543 270-401 (619)
180 3gs3_A Symplekin, LD45768P; he 49.6 2.7E+02 0.0092 32.5 15.9 160 36-244 12-172 (257)
181 3a6p_A Exportin-5; exportin-5, 46.5 8.2E+02 0.028 34.5 40.0 133 97-245 26-162 (1204)
182 2bnx_A Diaphanous protein homo 45.7 2.7E+02 0.0093 34.2 16.0 125 54-182 71-213 (386)
183 3gjx_A Exportin-1; transport, 34.2 1.2E+03 0.04 32.7 36.5 228 217-462 29-276 (1073)
184 3gs3_A Symplekin, LD45768P; he 29.8 7E+02 0.024 28.9 15.2 85 531-619 30-117 (257)
185 3gae_A Protein DOA1; UFD3, CDC 29.7 72 0.0025 37.1 6.8 99 648-753 101-217 (253)
186 3pst_A Protein DOA1; protein d 28.5 3E+02 0.01 34.4 12.3 105 648-759 273-396 (425)
187 3gae_A Protein DOA1; UFD3, CDC 26.2 2.4E+02 0.0081 32.7 10.4 102 735-842 101-218 (253)
188 3hhm_A Phosphatidylinositol-4, 25.7 1.4E+02 0.0047 41.6 9.3 99 2003-2103 349-463 (1091)
189 3o2t_A Symplekin; heat repeat, 25.6 1E+03 0.035 29.3 19.2 160 36-244 22-182 (386)
190 2wxf_A Phosphatidylinositol-4, 23.9 71 0.0024 43.9 6.1 98 2006-2104 213-333 (940)
191 3l3f_X Protein DOA1, DOA1/UFD3 22.3 3E+02 0.01 33.7 10.5 104 648-758 210-332 (362)
192 3qml_C Protein SLS1, nucleotid 21.5 1E+03 0.035 28.5 14.4 105 639-752 73-188 (315)
193 1juq_A ADP-ribosylation factor 21.4 83 0.0028 34.5 5.0 78 1555-1632 47-132 (171)
194 3qml_C Protein SLS1, nucleotid 20.6 1.1E+03 0.039 28.1 14.6 149 86-244 24-188 (315)
195 2y3a_A Phosphatidylinositol-4, 20.5 86 0.003 43.7 5.9 98 2006-2104 349-479 (1092)
No 1
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=4.5e-44 Score=473.60 Aligned_cols=689 Identities=16% Similarity=0.166 Sum_probs=526.0
Q ss_pred hHHHHHhhcc--CCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcC
Q 000124 127 IPPLLSLLKS--ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGD 204 (2138)
Q Consensus 127 Ip~Lv~LL~s--ed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~ 204 (2138)
+..|++++.+ .+.+-|+.|+++|..|++ ++.|.+.|+++|++..|.+++++.. ++.+...|.++|..+|.+
T Consensus 8 v~~m~~i~~~~~~~~~~~~~a~~nl~vl~r-----e~aga~~i~~~~~~~~~~~l~~~~~--~~~~~~~~~r~~~~~~~~ 80 (810)
T 3now_A 8 VKQMMDLTFDLATPIDKRRAAANNLVVLAK-----EQTGAELLYKDHCIAKVASLTKVEK--DQDIYVNMVHLVAALCEN 80 (810)
T ss_dssp HHHHHHHHHSSCCSSHHHHHHHHHHHHHSS-----CHHHHHHHHHTTHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccccCHHHHHHHHhhceeeec-----cccchHHHHhCchHHHHHHHHhccC--chhHHHHHHHHHHHHHhc
Confidence 5678888876 488999999999999995 8899999999999999999999633 356899999999999999
Q ss_pred CCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHh--hcCCCcch------hh------ccchHHHHHHHhccC
Q 000124 205 KDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLML--AFGDSIPT------VI------DSGAVKALVQLVGQN 270 (2138)
Q Consensus 205 ~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~--~~~e~r~~------l~------~~GaL~~LL~LL~s~ 270 (2138)
+..|...+.+.-|+++++.+|.+.++++...++.+++.+.+ ...+.+.. +. -...+..|+.++..
T Consensus 81 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 159 (810)
T 3now_A 81 SVERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITD- 159 (810)
T ss_dssp CHHHHHHHHHHSCHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTC-
T ss_pred cHHHHHHHHHHcCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhc-
Confidence 99999999999999999999999999999999999998874 11111111 11 12456666666652
Q ss_pred CCHhHHHHHHHHHHHHhhcCH-----HHHHHHHhcCCHHHHHHhhcCCch----hhhhhhhhhhhHHHHHHHHHHhhcCc
Q 000124 271 NDISVRASAADALEALSSKSI-----KAKKAVVAADGVPVLIGAIVAPSK----ECMQGQRGQALQGHATRALANIYGGM 341 (2138)
Q Consensus 271 sd~~vr~~Aa~aL~nLs~~s~-----e~Rk~i~e~ggL~~LI~LL~s~s~----e~mq~~~~~alqe~Al~ALanIsGgi 341 (2138)
..+...+++...++..++- +....+...+|+..|++....-.. ..++ .+.+ .+.++..||++++.
T Consensus 160 --~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~-~~~~-~r~~~~~~l~~~~~-- 233 (810)
T 3now_A 160 --RTISGAARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMD-ITGS-SSTIASVCLARIYE-- 233 (810)
T ss_dssp --TTSCHHHHHHHHHHHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCC-CCTT-HHHHHHHHHHHHHH--
T ss_pred --cccChhhHHHHHHHHHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCC-CChh-HHHHHHHHHHHHHH--
Confidence 2333344555555544311 122236667899999997765211 0111 1222 56666666666652
Q ss_pred hhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcC
Q 000124 342 PALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGN 421 (2138)
Q Consensus 342 s~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n 421 (2138)
.+.++ ..++.|. ..+..++...+...+.+ -+..++.+++++...
T Consensus 234 ------------------------------~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~a~~alt~i~~g 277 (810)
T 3now_A 234 ------------------------------NMYYD----EAKARFT-DQIDEYIKDKLLAPDME-SKVRVTVAITALLNG 277 (810)
T ss_dssp ------------------------------TCCSH----HHHHHHH-HHHHHHHHHHHSSCCHH-HHHHHHHHHHHHHSS
T ss_pred ------------------------------Hhccc----hhHHHHH-HHHHHHHHHHhccCChH-hHHHHHHHHHHHhcC
Confidence 22222 1123332 25667888888777776 578999999999655
Q ss_pred -chhHHHHh-hhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHH
Q 000124 422 -IFLSQWVS-HAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIA 499 (2138)
Q Consensus 422 -~~~~~~L~-e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~ 499 (2138)
++....+. ..|.++.++.++.+.++.+|..|+.++.+.+.+ +..+..+.+.| ++.|+.+++++++.+|..|+.+|+
T Consensus 278 ~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~-~~~R~~I~~~g-v~~L~~Ll~s~~~~vr~~Al~~L~ 355 (810)
T 3now_A 278 PLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSK-KDKAKALCEQG-VDILKRLYHSKNDGIRVRALVGLC 355 (810)
T ss_dssp SHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTS-HHHHHTTHHHH-HHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-cHHHHHHHHcC-cHHHHHHHcCCCHHHHHHHHHHHH
Confidence 46777666 668899999999999999999999999998887 78888888766 599999999999999999999999
Q ss_pred HHhhcCc-hhHHHHHhcCC----chHHHHHhhhC--CHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCCh
Q 000124 500 ILTEQVD-DSKWAITAAGG----IPPLVQLLEAG--SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGP 572 (2138)
Q Consensus 500 nLa~~s~-e~r~~I~~aGa----Ip~LV~LLks~--d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~ 572 (2138)
+++.... +.....++.|+ ++.|+++|.++ +++++++|+++|.+|+.+.+....++.+.|++|.|+++++++++
T Consensus 356 kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~ 435 (810)
T 3now_A 356 KLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQ 435 (810)
T ss_dssp HHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCG
T ss_pred HhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCCh
Confidence 9985322 23323344455 45577777777 89999999999999998776666677678999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhc-hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHH---hhhcccchhhHHHHhhcC
Q 000124 573 KGQDASAMALTKLIRAAD-SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQ---KGSAANKGLRSLVQVLNS 648 (2138)
Q Consensus 573 evq~~Aa~AL~nLs~~~e-~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~---~~l~~~GaI~aLV~LLks 648 (2138)
.+++.++++|.|++...+ .+.++.+.++.+..+.++... +..+..+.++ +.+.+.|+++.|+.++++
T Consensus 436 ~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~---------~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s 506 (810)
T 3now_A 436 SCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEE---------HELDDVDFINKRITVLANEGITTALCALAKT 506 (810)
T ss_dssp GGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCS---------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccc---------cccccHHHHHHHHHHHHHCcCHHHHHHHHcC
Confidence 999999999999997532 344455555555544332110 1122234444 456788999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhh-hHHhcCChh
Q 000124 649 SNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKM-SYIAEGDVK 727 (2138)
Q Consensus 649 ~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~-~I~~~G~V~ 727 (2138)
+++++|+.|+++|.||+. +++++..+++.|++++|+.+|+++++.+|..|++||.||+.+..+ .... .....|+++
T Consensus 507 ~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p--~~~~~~~~~~~aIp 583 (810)
T 3now_A 507 ESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINP--EVSFSGQRSLDVIR 583 (810)
T ss_dssp CCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH--HHHTTTHHHHHTHH
T ss_pred CCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCh--hhhhcchhhhcHHH
Confidence 999999999999999997 788999999999999999999999999999999999999873221 1110 001246999
Q ss_pred hHHhhhhcC-CHHHHHHHHHHHHHhhCC-chHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhh
Q 000124 728 PLIKLAKTS-SIDAAETAVAALANLLSD-PDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGN 805 (2138)
Q Consensus 728 ~Lv~LL~s~-s~~Vr~eAl~ALaNLa~~-~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~ 805 (2138)
+|+.+|.++ +...+.+|+++|+||+.. ++.+..+++.|++++|+.++.++++.+|+.|+++|+||+.+. .....
T Consensus 584 pLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~----~~~~~ 659 (810)
T 3now_A 584 PLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE----DVIKM 659 (810)
T ss_dssp HHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSH----HHHHH
T ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh----HHHHH
Confidence 999999865 445566899999999986 577889999999999999999999999999999999999863 33333
Q ss_pred hhh-hhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh-cccCCcccCCcccccccCCCchHHHHHhhhcCChHHHHHHHH
Q 000124 806 AQC-RFVVLTLVDSLNAMDMNGTDVADALEVVALLAR-TKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIE 883 (2138)
Q Consensus 806 i~~-~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~-~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~Aie 883 (2138)
+.. .+.++.|+.++... +...+.+|..+|++++. +......+. ..++|+++|+.++.+++..+|+.|+.
T Consensus 660 ~v~~~g~l~~Lv~LL~s~--d~~vq~~Aa~ALanLt~~s~~~~~~ii-------~~~g~I~~Lv~LL~s~d~~vq~~A~~ 730 (810)
T 3now_A 660 FEGNNDRVKFLALLCEDE--DEETATACAGALAIITSVSVKCCEKIL-------AIASWLDILHTLIANPSPAVQHRGIV 730 (810)
T ss_dssp HHSSSSHHHHHHHGGGCS--SHHHHHHHHHHHHHHHHHCHHHHHHHH-------TSTTHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHhccCcHHHHHHHhcCC--CHHHHHHHHHHHHHHhCCCHHHHHHHH-------HHcCCHHHHHHHHCCCCHHHHHHHHH
Confidence 333 67899999999764 45679999999999997 332222222 12679999999999999999999999
Q ss_pred HHHHhhccC
Q 000124 884 ILSRLCGDQ 892 (2138)
Q Consensus 884 iL~~L~~~~ 892 (2138)
+|.|+....
T Consensus 731 aL~NL~~~s 739 (810)
T 3now_A 731 IILNMINAG 739 (810)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHhCC
Confidence 999998743
No 2
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=6.4e-42 Score=453.10 Aligned_cols=708 Identities=16% Similarity=0.148 Sum_probs=557.7
Q ss_pred hhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhc-CCHHHHHHHHHHHHHhccC
Q 000124 36 STMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRS-GTPLAKVNVAATLSVLCKD 114 (2138)
Q Consensus 36 ~~~~~V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks-~~~evr~~Aa~~L~~Ls~~ 114 (2138)
++.++|.+|++.+.+.+.+.+.|+.|...|..|++++.++..++. .||+..|.+++++ .++++...|.++|..||++
T Consensus 3 ~~~~kv~~m~~i~~~~~~~~~~~~~a~~nl~vl~re~aga~~i~~--~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~ 80 (810)
T 3now_A 3 KTSTKVKQMMDLTFDLATPIDKRRAAANNLVVLAKEQTGAELLYK--DHCIAKVASLTKVEKDQDIYVNMVHLVAALCEN 80 (810)
T ss_dssp HHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHSSCHHHHHHHHH--TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHcccccCHHHHHHHHhhceeeeccccchHHHHh--CchHHHHHHHHhccCchhHHHHHHHHHHHHHhc
Confidence 678899999999998888889999999999999999877777665 5999999999999 7899999999999999999
Q ss_pred chhHH-HHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc---CCCCCChhhH-HHHHHc------CcHHHHHHhhCCC
Q 000124 115 EDLRL-KVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSS---GGLSDDHVGM-KIFVTE------GVVPTLWDQLNPK 183 (2138)
Q Consensus 115 e~~r~-~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~---~~~nkd~~gr-e~Ivea------G~Ip~Ll~LL~s~ 183 (2138)
+..|. .+.+.-+++.+++++.+++++...+++..+..+-. +++++.+.+. +.++.. ..+..|++++.+.
T Consensus 81 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 160 (810)
T 3now_A 81 SVERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDR 160 (810)
T ss_dssp CHHHHHHHHHHSCHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCT
T ss_pred cHHHHHHHHHHcCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhcc
Confidence 86665 45556889999999999888887777766655432 2333333222 122221 2778888888877
Q ss_pred CCCChhHHHHHHHHHHHHhcCCCchhH-HHHHhCcHHHHHHhhccC-----------CHHHHHHHHHHHHHHHhhcC-CC
Q 000124 184 NKQDNVVQGFVTGALRNLCGDKDGYWR-ATLEAGGVDIIVGLLSSD-----------NAAAQSNAASLLARLMLAFG-DS 250 (2138)
Q Consensus 184 s~ed~~V~e~Al~aL~nLcs~~e~r~~-aI~e~GGI~~Lv~lL~s~-----------s~evq~~A~~aL~nLs~~~~-e~ 250 (2138)
..+ ...+..++..|..-....+.++. -....+|+..++..-... .+++|..+.-+|.++...-. +.
T Consensus 161 ~~~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~ 239 (810)
T 3now_A 161 TIS-GAARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDE 239 (810)
T ss_dssp TSC-HHHHHHHHHHHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHH
T ss_pred ccC-hhhHHHHHHHHHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccch
Confidence 644 35688899988877766553322 244568999998876551 36799999999999984211 11
Q ss_pred cchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHH-hcCCHHHHHHhhcCCchhhhhhhhhhhhHHH
Q 000124 251 IPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVV-AADGVPVLIGAIVAPSKECMQGQRGQALQGH 329 (2138)
Q Consensus 251 r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~-e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~ 329 (2138)
.++.....+-.++-..+. ..+...+..|.+++.++....++....+. ..|.++.|+.++.+++.. .|+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~---------~q~~ 309 (810)
T 3now_A 240 AKARFTDQIDEYIKDKLL-APDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDEL---------QQRV 309 (810)
T ss_dssp HHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHH---------HHHH
T ss_pred hHHHHHHHHHHHHHHHhc-cCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHH---------HHHH
Confidence 123444445555555665 45567778899999999988777777665 789999999999987754 6788
Q ss_pred HHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHH
Q 000124 330 ATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQE 409 (2138)
Q Consensus 330 Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~ 409 (2138)
|.+++.++++.. ..+..+...++ ++|+.++++.+. .+|.
T Consensus 310 A~~al~~aa~~~---------------------------------------~~R~~I~~~gv-~~L~~Ll~s~~~-~vr~ 348 (810)
T 3now_A 310 ACECLIAASSKK---------------------------------------DKAKALCEQGV-DILKRLYHSKND-GIRV 348 (810)
T ss_dssp HHHHHHHHTTSH---------------------------------------HHHHTTHHHHH-HHHHHHTTCSCH-HHHH
T ss_pred HHHHHHHHcCCc---------------------------------------HHHHHHHHcCc-HHHHHHHcCCCH-HHHH
Confidence 999998876521 01222334455 999999997765 4899
Q ss_pred HHHHHHHHhhcCc--hhHHHHhhhc----hHHHHHHHHccC--CHHHHHHHHHHHHHhhhccchhhHHhh-hchhHHHHH
Q 000124 410 RVLEAMASLYGNI--FLSQWVSHAE----AKKVLIGLITMA--TADVREYLILSLTKLCRREVGIWEAIG-KREGIQLLI 480 (2138)
Q Consensus 410 ~Aa~AL~~L~~n~--~~~~~L~e~~----gI~~LV~LL~ss--s~evq~~Aa~aL~~Ls~~s~~~~~~I~-e~ggIp~LV 480 (2138)
+++.+|.++..+. +......+.+ .++.++.++.++ +.+++..++++|..++.+ ++.+..++ +.|++|.|+
T Consensus 349 ~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~-~~vk~~lv~d~g~Ip~LV 427 (810)
T 3now_A 349 RALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD-AECKEKLIEDKASIHALM 427 (810)
T ss_dssp HHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS-HHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHccchHHHHH
Confidence 9999999996432 2221222233 356688888887 889999999999999998 45555555 678999999
Q ss_pred HHhcCCchhhHHHHHHHHHHHhhcCch-----------------------------hH---HHHHhcCCchHHHHHhhhC
Q 000124 481 SLLGLSSEQHQEYAVQLIAILTEQVDD-----------------------------SK---WAITAAGGIPPLVQLLEAG 528 (2138)
Q Consensus 481 ~LL~s~d~~Vr~~Aa~aL~nLa~~s~e-----------------------------~r---~~I~~aGaIp~LV~LLks~ 528 (2138)
+++++++..++..++++|.||+...+. .+ ..+++.|++|.|+.+|+++
T Consensus 428 ~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~ 507 (810)
T 3now_A 428 DLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTE 507 (810)
T ss_dssp HHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCC
T ss_pred HHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCC
Confidence 999999999999999999999984321 12 5678899999999999999
Q ss_pred CHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcch
Q 000124 529 SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSS 608 (2138)
Q Consensus 529 d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V 608 (2138)
++.+|+.|+++|+||+. +++.|..+.+.|++++|+.+++++++..++.|+++|.|++.+.+. ..
T Consensus 508 s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p---------------~~ 571 (810)
T 3now_A 508 SHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINP---------------EV 571 (810)
T ss_dssp CHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH---------------HH
T ss_pred CHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCh---------------hh
Confidence 99999999999999996 566899999999999999999999999999999999999865321 00
Q ss_pred HHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCC-CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHH
Q 000124 609 KAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSS-NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRL 687 (2138)
Q Consensus 609 ~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~-s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~L 687 (2138)
+ . .. . ...|++++|+.++.++ +...+..|+++|.||+..+++.+..+++.|+++.|+.+
T Consensus 572 ---~---~-------~~----~---~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~L 631 (810)
T 3now_A 572 ---S---F-------SG----Q---RSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYY 631 (810)
T ss_dssp ---H---T-------TT----H---HHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred ---h---h-------cc----h---hhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHH
Confidence 0 0 00 0 0124799999999876 45566789999999999778899999999999999999
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHh-cCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-CchHHHHHHh-c
Q 000124 688 LTSNTQMVATQSARALGALSRPTKTKTTNKMSYIA-EGDVKPLIKLAKTSSIDAAETAVAALANLLS-DPDIAAEVLL-E 764 (2138)
Q Consensus 688 L~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~-~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~-~~e~r~~Ii~-~ 764 (2138)
+.++++.+++.|+++|+||+.+ . ..+..+.+ .|.+++|+.++.+.+.+++.+|+++|+||+. ++...+.+++ .
T Consensus 632 L~s~~~~Vq~~A~~~L~NLa~~--~--~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~ 707 (810)
T 3now_A 632 LMEDHLYLTRAAAQCLCNLVMS--E--DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIA 707 (810)
T ss_dssp HHSCCTTHHHHHHHHHHHHTTS--H--HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTST
T ss_pred HcCCCHHHHHHHHHHHHHHhCC--h--HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 9999999999999999999872 2 45555554 7899999999999999999999999999998 7888888888 8
Q ss_pred CcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCC-CCchhHHHHHHHHHHHhh
Q 000124 765 DVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMD-MNGTDVADALEVVALLAR 841 (2138)
Q Consensus 765 g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~-~~~~~~~~AL~ALa~La~ 841 (2138)
|++++|++++.++++++|+.|+|+|.|++... ++....+...|++++|+++++..+ .+.+....|+++|.++-.
T Consensus 708 g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s---~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~ 782 (810)
T 3now_A 708 SWLDILHTLIANPSPAVQHRGIVIILNMINAG---EEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER 782 (810)
T ss_dssp THHHHHHHHHTCSSHHHHHHHHHHHHHHHTTC---HHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999853 556777778999999999997542 345677888899888874
No 3
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=6.6e-35 Score=371.79 Aligned_cols=506 Identities=21% Similarity=0.213 Sum_probs=414.1
Q ss_pred cCcHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhHHHHHhc-CChHHHHHhhcc-CCHHHHHHHHHHHHHhhcCCCCCC
Q 000124 83 AQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLG-GCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDD 160 (2138)
Q Consensus 83 aGgVp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~-G~Ip~Lv~LL~s-ed~eVr~aAa~AL~nLS~~~~nkd 160 (2138)
.|++|.|+.+|+++++.++..|+.+|.+++.+++++..+... |+++.|+++|.+ ++++++..|+.+|.+|+. +
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~-----~ 90 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-----H 90 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-----S
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHc-----C
Confidence 689999999999999999999999999999998888777765 899999999986 489999999999999996 4
Q ss_pred hhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHH
Q 000124 161 HVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLL 240 (2138)
Q Consensus 161 ~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL 240 (2138)
+.++..+.+.|++|.|++++.+++ +.++..++++|.+++.+++.....+.+.|+++.|+.+|.+++++++..++.+|
T Consensus 91 ~~~~~~i~~~g~i~~L~~lL~~~~---~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L 167 (529)
T 1jdh_A 91 REGLLAIFKSGGIPALVKMLGSPV---DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL 167 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSC---HHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred chhHHHHHHcCCHHHHHHHHcCCC---HHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 568999999999999999998754 67899999999999998777778888999999999999999999999999999
Q ss_pred HHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhh
Q 000124 241 ARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQG 320 (2138)
Q Consensus 241 ~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~ 320 (2138)
.+++..+++.+..+.+.|+++.|+.++..+.+...+..+..+|.+++. +++.+..+.+.|+++.|+.++.+++.+
T Consensus 168 ~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll~~~~~~---- 242 (529)
T 1jdh_A 168 QILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQR---- 242 (529)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHH----
T ss_pred HHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhCCChH----
Confidence 999977777778888899999999999866676778888999999998 578888999999999999988776533
Q ss_pred hhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcC
Q 000124 321 QRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLK 400 (2138)
Q Consensus 321 ~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~ 400 (2138)
++..+.++|.+++.. .. ...
T Consensus 243 -----~~~~a~~~L~~l~~~--------------------------------------~~-~~~---------------- 262 (529)
T 1jdh_A 243 -----LVQNCLWTLRNLSDA--------------------------------------AT-KQE---------------- 262 (529)
T ss_dssp -----HHHHHHHHHHHHHTT--------------------------------------CT-TCS----------------
T ss_pred -----HHHHHHHHHHHHhcC--------------------------------------Ch-hhH----------------
Confidence 555666666665421 00 000
Q ss_pred CCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHH
Q 000124 401 PHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLI 480 (2138)
Q Consensus 401 s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV 480 (2138)
...++++.|+.++.+.+++++..++.+|.+++.++++.+..+.+.|+++.|+
T Consensus 263 ----------------------------~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~ 314 (529)
T 1jdh_A 263 ----------------------------GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 314 (529)
T ss_dssp ----------------------------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHH
T ss_pred ----------------------------HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHH
Confidence 0124456677777777888899999999999988777888899999999999
Q ss_pred HHhcC--CchhhHHHHHHHHHHHhhcCch---hHHHHHhcCCchHHHHHhhhCC-HHHHHHHHHHHHHHhcCChhHHHHH
Q 000124 481 SLLGL--SSEQHQEYAVQLIAILTEQVDD---SKWAITAAGGIPPLVQLLEAGS-QKAREVAAHVLWILCCHSEDIRACV 554 (2138)
Q Consensus 481 ~LL~s--~d~~Vr~~Aa~aL~nLa~~s~e---~r~~I~~aGaIp~LV~LLks~d-~~vre~Aa~aL~nLs~~sd~~r~~I 554 (2138)
+++.. .++.++..++.+|+||+..+++ .+..+...|+++.|+++|++++ +.++..++++|+|++.+ +..+..+
T Consensus 315 ~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~ 393 (529)
T 1jdh_A 315 RTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPL 393 (529)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHH
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC-hhhhHHH
Confidence 99975 3478999999999999875444 4678889999999999999885 69999999999999985 4456778
Q ss_pred HHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhc
Q 000124 555 ESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSA 634 (2138)
Q Consensus 555 ~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~ 634 (2138)
.+.|+++.|+.+++++++++|..++|++.|...... ...+++...+..++++++.. ++ .+..+.
T Consensus 394 ~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~------------~~~~~i~~~~~~al~~L~~~---~~-~~~~l~ 457 (529)
T 1jdh_A 394 REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG------------VRMEEIVEGCTGALHILARD---VH-NRIVIR 457 (529)
T ss_dssp HHTTHHHHHHHHHHHHHHHHC-----------CBTT------------BCHHHHHHHHHHHHHHHTTS---HH-HHHHHH
T ss_pred HHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhcc------------ccHHHHHHHHHHHHHHHhcC---ch-HHHHHh
Confidence 889999999999999999999999999998321110 01123444566777776542 22 234467
Q ss_pred ccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 000124 635 ANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALS 707 (2138)
Q Consensus 635 ~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa 707 (2138)
+.|+++.|+.++++++++++..++++|.+++. +++.+..+.+.|+++.|.+++.+.++.++..|.++|.+|+
T Consensus 458 ~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~-~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l~ 529 (529)
T 1jdh_A 458 GLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529 (529)
T ss_dssp HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred ccCCccHHHHHHcCCchHHHHHHHHHHHHHhc-CHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 78999999999999999999999999999997 6888999999999999999999999999999999999874
No 4
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=1.9e-34 Score=367.65 Aligned_cols=508 Identities=18% Similarity=0.195 Sum_probs=415.5
Q ss_pred HhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHc-CcHHHHHHhhCCCCCCChhHHHHHHHHHHH
Q 000124 122 LLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTE-GVVPTLWDQLNPKNKQDNVVQGFVTGALRN 200 (2138)
Q Consensus 122 ~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~Ivea-G~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~n 200 (2138)
...|+++.|+++|.++++.+|..|+.+|.+++. +..++..++.. |+++.|+++|.+++ ++.++..++++|++
T Consensus 14 ~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~-----~~~~~~~~~~~~~~i~~Lv~~L~~~~--~~~~~~~a~~~L~~ 86 (529)
T 1jdh_A 14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK-----KEASRHAIMRSPQMVSAIVRTMQNTN--DVETARCTAGTLHN 86 (529)
T ss_dssp ---CHHHHHHHHHTCSCHHHHHHHHHHHHHHHT-----SHHHHHHHHTCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHH
T ss_pred hhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHc-----CCccHHHHHhCcchHHHHHHHHhcCC--CHHHHHHHHHHHHH
Confidence 346889999999999999999999999999996 34566677754 89999999997543 45689999999999
Q ss_pred HhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHH
Q 000124 201 LCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAA 280 (2138)
Q Consensus 201 Lcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa 280 (2138)
++..++ ....+.+.|+++.|+.+|.++++.++..++.+|.+++..++..+..+.+.|+++.|+.++.+ .+..++..+.
T Consensus 87 ls~~~~-~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~~~ 164 (529)
T 1jdh_A 87 LSHHRE-GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAITT 164 (529)
T ss_dssp HTTSHH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC-CCHHHHHHHH
T ss_pred HHcCch-hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhc-CCHHHHHHHH
Confidence 988765 55788899999999999999999999999999999997767777778889999999999984 5678899999
Q ss_pred HHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhh
Q 000124 281 DALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAP 360 (2138)
Q Consensus 281 ~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~ 360 (2138)
.+|.+++..+++.+..+.+.|+++.|++++.+++.+
T Consensus 165 ~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~-------------------------------------------- 200 (529)
T 1jdh_A 165 DCLQILAYGNQESKLIILASGGPQALVNIMRTYTYE-------------------------------------------- 200 (529)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCH--------------------------------------------
T ss_pred HHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChH--------------------------------------------
Confidence 999999987789999999888888888876543211
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHH
Q 000124 361 VADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGL 440 (2138)
Q Consensus 361 ~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~L 440 (2138)
..+..++.+|.+++.++.++..+.+.++++.|+.+
T Consensus 201 ---------------------------------------------~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~l 235 (529)
T 1jdh_A 201 ---------------------------------------------KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLH 235 (529)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTT
T ss_pred ---------------------------------------------HHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHH
Confidence 13334445566666666666777788899999999
Q ss_pred HccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchH
Q 000124 441 ITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPP 520 (2138)
Q Consensus 441 L~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~ 520 (2138)
+..++..++..++.+|.+++...+.. ....++++.|++++++.++.++..++++|++|+.++++++..+.+.|+++.
T Consensus 236 l~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~ 312 (529)
T 1jdh_A 236 LTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA 312 (529)
T ss_dssp TTSSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHH
T ss_pred HhCCChHHHHHHHHHHHHHhcCChhh---HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHH
Confidence 99999999999999999999874321 233588999999999999999999999999999977789999999999999
Q ss_pred HHHHhhhC--CHHHHHHHHHHHHHHhcCChh---HHHHHHHcCCcchhhhccccCC-hhHHHHHHHHHHHHHHhhchhhH
Q 000124 521 LVQLLEAG--SQKAREVAAHVLWILCCHSED---IRACVESAGAVPAFLWLLKSGG-PKGQDASAMALTKLIRAADSATI 594 (2138)
Q Consensus 521 LV~LLks~--d~~vre~Aa~aL~nLs~~sd~---~r~~I~e~GaI~aLv~LLkS~~-~evq~~Aa~AL~nLs~~~e~~aI 594 (2138)
|+++|.+. ++.+++.++.+|+||+.++.. .+..+.+.|+++.|+.++++++ +.++..++++|+|++.+++
T Consensus 313 L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~---- 388 (529)
T 1jdh_A 313 LVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA---- 388 (529)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG----
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh----
Confidence 99999863 489999999999999875432 5677888999999999999876 5899999999999974321
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhh
Q 000124 595 NQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGS 674 (2138)
Q Consensus 595 ~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~ 674 (2138)
.+ ..+.+.|+++.|+.+++++++++|..|++++.|.+..
T Consensus 389 -------------~~---------------------~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~------- 427 (529)
T 1jdh_A 389 -------------NH---------------------APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFV------- 427 (529)
T ss_dssp -------------GH---------------------HHHHHTTHHHHHHHHHHHHHHHHC-----------CB-------
T ss_pred -------------hh---------------------HHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhh-------
Confidence 00 1234567899999999988999999999999984321
Q ss_pred hhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCC
Q 000124 675 LATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSD 754 (2138)
Q Consensus 675 Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~ 754 (2138)
.|+ ..+.++..++.+|++++. .. .++..+.+.|++++|+.++.+++++++..|+.+|++|+.+
T Consensus 428 ---~~~----------~~~~i~~~~~~al~~L~~--~~--~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~ 490 (529)
T 1jdh_A 428 ---EGV----------RMEEIVEGCTGALHILAR--DV--HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 490 (529)
T ss_dssp ---TTB----------CHHHHHHHHHHHHHHHTT--SH--HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred ---ccc----------cHHHHHHHHHHHHHHHhc--Cc--hHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC
Confidence 111 124466778999999986 23 6778899999999999999999999999999999999999
Q ss_pred chHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 000124 755 PDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQL 792 (2138)
Q Consensus 755 ~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL 792 (2138)
++.+..+.+.|+++.|.+++.+.++++++.|.++|.+|
T Consensus 491 ~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 491 KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 89999999999999999999999999999999999987
No 5
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=1.5e-34 Score=388.73 Aligned_cols=543 Identities=18% Similarity=0.201 Sum_probs=436.8
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhh
Q 000124 84 QAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVG 163 (2138)
Q Consensus 84 GgVp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~g 163 (2138)
.+++.+++.|++++.+++..++..+... .+..+ ..|+++.|+++|.++++.+|+.|+.+|.+|+. +...
T Consensus 115 ~~i~~lv~~L~~~~~~~r~~a~~~l~~~-----~~~~i-~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~-----~~~~ 183 (780)
T 2z6g_A 115 SAHPTNVQRLAEPSQMLKHAVVNLINYQ-----DDAEL-ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK-----KEAS 183 (780)
T ss_dssp -----------CCSCHHHHHHHHHHHHH-----HHHHH-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHT-----SHHH
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHhh-----hHHHH-HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhC-----CChh
Confidence 5789999999999999999888888754 22233 37999999999999999999999999999996 3445
Q ss_pred HHHHHH-cCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHH
Q 000124 164 MKIFVT-EGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLAR 242 (2138)
Q Consensus 164 re~Ive-aG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~n 242 (2138)
+..++. .|+++.|+++|..+. +..++..|+.+|.+|+...+. ...+.+.|+++.|+.+|.++++.++..++.+|.+
T Consensus 184 ~~~i~~~~~~i~~Lv~~L~~~~--d~~vr~~Aa~aL~~Ls~~~~~-~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~n 260 (780)
T 2z6g_A 184 RHAIMRSPQMVSAIVRTMQNTN--DVETARCTSGTLHNLSHHREG-LLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHN 260 (780)
T ss_dssp HHHHTTCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHTSHHH-HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHhccChHHHHHHHHcCCC--CHHHHHHHHHHHHHHhCCchh-HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 666664 489999999997543 466899999999999987654 5778889999999999999999999999999999
Q ss_pred HHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhh
Q 000124 243 LMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQR 322 (2138)
Q Consensus 243 Ls~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~ 322 (2138)
|+...+..+..+.+.|+++.|+.++.+ .+..++..+..+|.+++..+++.+..+.+.++++.|+.++.+.+.
T Consensus 261 La~~~~~~~~~v~~~g~v~~Lv~lL~~-~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~------- 332 (780)
T 2z6g_A 261 LLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY------- 332 (780)
T ss_dssp HHHHSTTHHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCC-------
T ss_pred HhCCChhhHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCH-------
Confidence 998777777777789999999999984 567888999999999998778888888877777777776654331
Q ss_pred hhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCC
Q 000124 323 GQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPH 402 (2138)
Q Consensus 323 ~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~ 402 (2138)
T Consensus 333 -------------------------------------------------------------------------------- 332 (780)
T 2z6g_A 333 -------------------------------------------------------------------------------- 332 (780)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHH
Q 000124 403 DNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISL 482 (2138)
Q Consensus 403 ~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~L 482 (2138)
+..+..++.+|.+++....++..+...++++.|+.++...+..++..++.+|.+++..... .....+.++.|+++
T Consensus 333 --~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~---~~~~~~~i~~Lv~l 407 (780)
T 2z6g_A 333 --EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK---QEGMEGLLGTLVQL 407 (780)
T ss_dssp --HHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTT---CSCCHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchh---hhhhhhHHHHHHHH
Confidence 1133344455555555555666677788899999999999999999999999999976432 12345789999999
Q ss_pred hcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhC-C-HHHHHHHHHHHHHHhcCChh---HHHHHHHc
Q 000124 483 LGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG-S-QKAREVAAHVLWILCCHSED---IRACVESA 557 (2138)
Q Consensus 483 L~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~-d-~~vre~Aa~aL~nLs~~sd~---~r~~I~e~ 557 (2138)
+++.++.++..|+++|++|+..+++++..+.+.|+++.|+++|.+. + ..++..|+++|+||+..... .+..+.+.
T Consensus 408 L~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~ 487 (780)
T 2z6g_A 408 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLH 487 (780)
T ss_dssp TTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHc
Confidence 9999999999999999999997778899999999999999999863 3 59999999999999874433 45677889
Q ss_pred CCcchhhhccccCCh-hHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhccc
Q 000124 558 GAVPAFLWLLKSGGP-KGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAAN 636 (2138)
Q Consensus 558 GaI~aLv~LLkS~~~-evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~ 636 (2138)
++++.|+.++.+++. .++..++++|+|++..++ . +..+.+.
T Consensus 488 ~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~-------------------------------------~-~~~i~~~ 529 (780)
T 2z6g_A 488 YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-------------------------------------N-HAPLREQ 529 (780)
T ss_dssp TCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHH-------------------------------------H-HHHHHHT
T ss_pred CCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHH-------------------------------------H-HHHHHHC
Confidence 999999999998775 999999999999974311 0 1123456
Q ss_pred chhhHHHHhhcCCCHHHHHHHHHHHHH--HhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCccc
Q 000124 637 KGLRSLVQVLNSSNEENQEYAASVLAD--LFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKT 714 (2138)
Q Consensus 637 GaI~aLV~LLks~s~evre~Aa~ALan--L~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d 714 (2138)
|+++.|+.++++++.++|..+++++.| +.. | ...+.++..++.+|++|+. ..
T Consensus 530 g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~------------~----------~~~~~v~~~a~~aL~~La~--~~-- 583 (780)
T 2z6g_A 530 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE------------G----------VRMEEIVEACTGALHILAR--DI-- 583 (780)
T ss_dssp THHHHHHHHHHHHHHHHHHTTC------CCST------------T----------CCHHHHHHHHHHHHHHHTT--SH--
T ss_pred CCHHHHHHHHHhcchhHHHHHhhccccchhhc------------c----------cChHHHHHHHHHHHHHHhc--Ch--
Confidence 789999999998888889888887766 111 1 1235688899999999986 33
Q ss_pred chhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhh
Q 000124 715 TNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLK 794 (2138)
Q Consensus 715 ~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~ 794 (2138)
.++..+.+.|++++|+.+|.+++++++..|+.+|++|+.+++.+..+.+.|+++.|++++.+.++.+|+.|+++|.+++.
T Consensus 584 ~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~ 663 (780)
T 2z6g_A 584 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE 663 (780)
T ss_dssp HHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 67778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 000124 795 HFP 797 (2138)
Q Consensus 795 ~~~ 797 (2138)
+.+
T Consensus 664 ~~~ 666 (780)
T 2z6g_A 664 DKP 666 (780)
T ss_dssp TSC
T ss_pred CCh
Confidence 764
No 6
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=2.2e-34 Score=387.17 Aligned_cols=564 Identities=19% Similarity=0.180 Sum_probs=440.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhHH
Q 000124 40 TVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRL 119 (2138)
Q Consensus 40 ~V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~~r~ 119 (2138)
.+..+++.|...+ ...+..+++.+... .+..+. .|++|.|+.+|+++++.+|.+|+.+|.+|+.+.+++.
T Consensus 116 ~i~~lv~~L~~~~--~~~r~~a~~~l~~~------~~~~i~--~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~ 185 (780)
T 2z6g_A 116 AHPTNVQRLAEPS--QMLKHAVVNLINYQ------DDAELA--TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRH 185 (780)
T ss_dssp ----------CCS--CHHHHHHHHHHHHH------HHHHHH--HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHH
T ss_pred cHHHHHHHhcCcc--HHHHHHHHHHHHhh------hHHHHH--hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHH
Confidence 3567777776543 23455555555432 222343 4899999999999999999999999999999888888
Q ss_pred HHHhc-CChHHHHHhhccC-CHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHH
Q 000124 120 KVLLG-GCIPPLLSLLKSE-STDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGA 197 (2138)
Q Consensus 120 ~v~~~-G~Ip~Lv~LL~se-d~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~a 197 (2138)
.+... |+++.|+++|.++ +++++..|+.+|.+|+. +..++..+.+.|+++.|+++|.+++ +.++..|+++
T Consensus 186 ~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~-----~~~~~~~i~~~g~I~~Lv~lL~~~~---~~v~~~A~~a 257 (780)
T 2z6g_A 186 AIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSH-----HREGLLAIFKSGGIPALVNMLGSPV---DSVLFHAITT 257 (780)
T ss_dssp HHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-----SHHHHHHHHHTTHHHHHHHHTTCSC---HHHHHHHHHH
T ss_pred HHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-----CchhHHHHHHcCCHHHHHHHHcCCC---HHHHHHHHHH
Confidence 77755 8999999999874 99999999999999996 4566889999999999999998754 6799999999
Q ss_pred HHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHH
Q 000124 198 LRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRA 277 (2138)
Q Consensus 198 L~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~ 277 (2138)
|.|||...+.....+.+.|+++.|+.+|.+.+..++..++.+|.+++..+++.+..+.+.|+++.|+.++..+.....+.
T Consensus 258 L~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~ 337 (780)
T 2z6g_A 258 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 337 (780)
T ss_dssp HHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHH
Confidence 99999988777788889999999999999999999999999999999777777778888899999999998666666777
Q ss_pred HHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCc
Q 000124 278 SAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRL 357 (2138)
Q Consensus 278 ~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~s 357 (2138)
.+..+|.+++. +...+..+.+.|+++.|+.++.+++.. ++..+..+|.+++...
T Consensus 338 ~a~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~lL~~~~~~---------~~~~a~~~L~~L~~~~---------------- 391 (780)
T 2z6g_A 338 TTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQR---------LVQNCLWTLRNLSDAA---------------- 391 (780)
T ss_dssp HHHHHHHHHHT-STTHHHHHHHTTHHHHHGGGTTCSCHH---------HHHHHHHHHHHHHTTC----------------
T ss_pred HHHHHHHHhhc-ChHHHHHHHHhchHHHHHHHHcCCchH---------HHHHHHHHHHHHhccc----------------
Confidence 88999999998 578888999999999999988775533 4555666666654200
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHH
Q 000124 358 AAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVL 437 (2138)
Q Consensus 358 s~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~L 437 (2138)
... ....++++.|
T Consensus 392 -----------------------~~~--------------------------------------------~~~~~~i~~L 404 (780)
T 2z6g_A 392 -----------------------TKQ--------------------------------------------EGMEGLLGTL 404 (780)
T ss_dssp -----------------------TTC--------------------------------------------SCCHHHHHHH
T ss_pred -----------------------hhh--------------------------------------------hhhhhHHHHH
Confidence 000 0012345667
Q ss_pred HHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCC-c-hhhHHHHHHHHHHHhhcCch---hHHHH
Q 000124 438 IGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLS-S-EQHQEYAVQLIAILTEQVDD---SKWAI 512 (2138)
Q Consensus 438 V~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~-d-~~Vr~~Aa~aL~nLa~~s~e---~r~~I 512 (2138)
+.++.+.+..++..++.+|.+++.+++..+..+.+.|+++.|++++... + +.++..|+++|+||+..+.+ .+..+
T Consensus 405 v~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v 484 (780)
T 2z6g_A 405 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAV 484 (780)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 7777777788899999999999988778888888999999999999753 3 48999999999999875444 35678
Q ss_pred HhcCCchHHHHHhhhCC-HHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhch
Q 000124 513 TAAGGIPPLVQLLEAGS-QKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADS 591 (2138)
Q Consensus 513 ~~aGaIp~LV~LLks~d-~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~ 591 (2138)
...|+++.|+++|.+++ +.+++.++++|+||+. .+..+..+.+.|+++.|+++++++++++++.++|++.|-.
T Consensus 485 ~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~----- 558 (780)
T 2z6g_A 485 RLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL-CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ----- 558 (780)
T ss_dssp HHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS-SHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------C-----
T ss_pred HHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc-CHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccch-----
Confidence 88999999999999886 5999999999999997 4555677888999999999998877777777777654400
Q ss_pred hhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhh
Q 000124 592 ATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDI 671 (2138)
Q Consensus 592 ~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~ 671 (2138)
+ ..| ...+++++.++.+|.+|+. ++++
T Consensus 559 -----------------------------------------~-~~~----------~~~~~v~~~a~~aL~~La~-~~~~ 585 (780)
T 2z6g_A 559 -----------------------------------------F-VEG----------VRMEEIVEACTGALHILAR-DIHN 585 (780)
T ss_dssp -----------------------------------------C-STT----------CCHHHHHHHHHHHHHHHTT-SHHH
T ss_pred -----------------------------------------h-hcc----------cChHHHHHHHHHHHHHHhc-Chhh
Confidence 0 000 0235678899999999997 7888
Q ss_pred hhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHh
Q 000124 672 CGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANL 751 (2138)
Q Consensus 672 r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNL 751 (2138)
+..+.+.|++++|+.+|.++++.++..|+.+|.+++. .. ..+..+.+.|++++|++++++.+.+++..|+.+|.++
T Consensus 586 ~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~--~~--~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l 661 (780)
T 2z6g_A 586 RIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ--DK--EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 661 (780)
T ss_dssp HHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHT--SH--HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc--CH--HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999985 22 6778899999999999999999999999999999999
Q ss_pred hCCch--HHHHHHhcCcHHHHHHHHhCCCHHH
Q 000124 752 LSDPD--IAAEVLLEDVVSALTRVLAEGTSEG 781 (2138)
Q Consensus 752 a~~~e--~r~~Ii~~g~L~~LV~LL~~~~~~V 781 (2138)
+.+.+ .+.. .+++.+..++.+++...
T Consensus 662 ~~~~~~~~~~~----l~~~ll~~l~~~~~~~w 689 (780)
T 2z6g_A 662 SEDKPQDYKKR----LSVELTSSLFRTEPMTW 689 (780)
T ss_dssp HTTSCTTHHHH----HHHHHHHHC--------
T ss_pred HcCChHhhhcc----ccHHHHHHHHhCCCccc
Confidence 98654 2222 15566667776655433
No 7
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.2e-34 Score=376.58 Aligned_cols=528 Identities=20% Similarity=0.203 Sum_probs=432.8
Q ss_pred cCcHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhHHHHHhc-CChHHHHHhhcc-CCHHHHHHHHHHHHHhhcCCCCCC
Q 000124 83 AQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLG-GCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDD 160 (2138)
Q Consensus 83 aGgVp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~-G~Ip~Lv~LL~s-ed~eVr~aAa~AL~nLS~~~~nkd 160 (2138)
.|+++.|+.+|+++++.++..|+.+|.+++.+.+++..+... |+++.|++.|.+ ++++++..|+.+|.+|+. +
T Consensus 13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~-----~ 87 (644)
T 2z6h_A 13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-----H 87 (644)
T ss_dssp TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT-----S
T ss_pred hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-----C
Confidence 689999999999999999999999999999988888777765 889999999987 499999999999999996 4
Q ss_pred hhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHH
Q 000124 161 HVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLL 240 (2138)
Q Consensus 161 ~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL 240 (2138)
..++..+.+.|+++.|++++.+++ +.++..|+++|.|++...+.....+.+.|+++.|+.+|.++++.++..++.+|
T Consensus 88 ~~~~~~i~~~g~i~~Lv~lL~~~~---~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L 164 (644)
T 2z6h_A 88 REGLLAIFKSGGIPALVKMLGSPV---DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL 164 (644)
T ss_dssp HHHHHHHHTTTHHHHHHHHTTCSS---HHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred hhhHHHHHHcCCHHHHHHHHhCCC---HHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHH
Confidence 558999999999999999998754 67899999999999998877778889999999999999999999999999999
Q ss_pred HHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhh
Q 000124 241 ARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQG 320 (2138)
Q Consensus 241 ~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~ 320 (2138)
.+++..+++.+..+.+.|+++.|+.++........+..+..+|.+++. ++..|..+.+.|+++.|+.++.+++..
T Consensus 165 ~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~~~~~---- 239 (644)
T 2z6h_A 165 QILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQR---- 239 (644)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTCSCHH----
T ss_pred HHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhcCCHH----
Confidence 999976777778888999999999999866667788899999999998 588899999999999999988776533
Q ss_pred hhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcC
Q 000124 321 QRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLK 400 (2138)
Q Consensus 321 ~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~ 400 (2138)
++..+..+|.+++.. .. ...
T Consensus 240 -----~~~~a~~~L~nL~~~--------------------------------------~~-~~~---------------- 259 (644)
T 2z6h_A 240 -----LVQNCLWTLRNLSDA--------------------------------------AT-KQE---------------- 259 (644)
T ss_dssp -----HHHHHHHHHHHHGGG--------------------------------------CT-TCC----------------
T ss_pred -----HHHHHHHHHHHHhhc--------------------------------------ch-hhh----------------
Confidence 566677777666520 00 000
Q ss_pred CCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHH
Q 000124 401 PHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLI 480 (2138)
Q Consensus 401 s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV 480 (2138)
...++++.|+.++.+.+.+++..++.+|.+++.+++..+..+.+.|+++.|+
T Consensus 260 ----------------------------~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv 311 (644)
T 2z6h_A 260 ----------------------------GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 311 (644)
T ss_dssp ----------------------------SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred ----------------------------hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHH
Confidence 0113456677777777788888999999999988778888888999999999
Q ss_pred HHhcCC--chhhHHHHHHHHHHHhhcCc---hhHHHHHhcCCchHHHHHhhhCC-HHHHHHHHHHHHHHhcCChhHHHHH
Q 000124 481 SLLGLS--SEQHQEYAVQLIAILTEQVD---DSKWAITAAGGIPPLVQLLEAGS-QKAREVAAHVLWILCCHSEDIRACV 554 (2138)
Q Consensus 481 ~LL~s~--d~~Vr~~Aa~aL~nLa~~s~---e~r~~I~~aGaIp~LV~LLks~d-~~vre~Aa~aL~nLs~~sd~~r~~I 554 (2138)
+++.+. .+.++..++++|+||+..++ ..+..+...|+++.|+++|++.+ +.+++.++++|+||+.+ +..+..+
T Consensus 312 ~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~-~~~~~~i 390 (644)
T 2z6h_A 312 RTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPL 390 (644)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHH
T ss_pred HHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccC-HHHHHHH
Confidence 999763 37899999999999987544 24556778899999999999874 79999999999999985 4455777
Q ss_pred HHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhc
Q 000124 555 ESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSA 634 (2138)
Q Consensus 555 ~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~ 634 (2138)
.+.|+++.|++++.++++++|+.++|++.|-. +.
T Consensus 391 ~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~----------------------------------------------~~ 424 (644)
T 2z6h_A 391 REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ----------------------------------------------FV 424 (644)
T ss_dssp HHTTHHHHHHHHHHHHHHHHTTC--------------------------------------------------------C
T ss_pred HHcCCHHHHHHHHhccchhhhhHhhhccccch----------------------------------------------hc
Confidence 88999999999998888888888887665410 00
Q ss_pred ccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCccc
Q 000124 635 ANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKT 714 (2138)
Q Consensus 635 ~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d 714 (2138)
.| ..++++++.++.+|++|+. ++.++..+.+.|++++|+.+|.++++.++..|+.+|.+++. ..
T Consensus 425 -~~----------~~~~~v~~~a~~aL~~La~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~--~~-- 488 (644)
T 2z6h_A 425 -EG----------VRMEEIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ--DK-- 488 (644)
T ss_dssp -CS----------SCHHHHHHHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT--SH--
T ss_pred -cc----------ccHHHHHHHHHHHHHHHhc-CHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc--CH--
Confidence 00 0245678889999999998 67888999999999999999999999999999999999986 22
Q ss_pred chhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHH--HHHHhcCcHHHHHHHHhCCC
Q 000124 715 TNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIA--AEVLLEDVVSALTRVLAEGT 778 (2138)
Q Consensus 715 ~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r--~~Ii~~g~L~~LV~LL~~~~ 778 (2138)
..+..+.+.|+++.|.+++++++++++..|+.+|.+++.+.... ..+ ++..+..++.+++
T Consensus 489 ~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~----~~~il~~~~~~~~ 550 (644)
T 2z6h_A 489 EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRL----SVELTSSLFRTEP 550 (644)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHH----HHHHHHHHSCCSC
T ss_pred HHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhccc----chHHHHHHHhCCC
Confidence 57778899999999999999999999999999999998865421 111 3555556665554
No 8
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=372.10 Aligned_cols=510 Identities=18% Similarity=0.190 Sum_probs=421.6
Q ss_pred HhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHc-CcHHHHHHhhCCCCCCChhHHHHHHHHHHH
Q 000124 122 LLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTE-GVVPTLWDQLNPKNKQDNVVQGFVTGALRN 200 (2138)
Q Consensus 122 ~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~Ivea-G~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~n 200 (2138)
...|+++.|+++|.++++.+|..|+.+|.+|+.. ..++..++.. |+++.|++.|.++. ++.++..++.+|.+
T Consensus 11 ~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~-----~~~~~~i~~~~~~i~~Lv~~L~~~~--~~~~~~~A~~~L~~ 83 (644)
T 2z6h_A 11 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-----EASRHAIMRSPQMVSAIVRTMQNTN--DVETARCTAGTLHN 83 (644)
T ss_dssp -CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTS-----TTHHHHHTTCHHHHHHHHHHHHSCC--CHHHHHHHHHHHHH
T ss_pred hhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCC-----ChhHHHHHhccChHHHHHHHHhcCC--CHHHHHHHHHHHHH
Confidence 4569999999999999999999999999999963 3356666654 89999999998643 45689999999999
Q ss_pred HhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHH
Q 000124 201 LCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAA 280 (2138)
Q Consensus 201 Lcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa 280 (2138)
|+..++ ....+.+.|+++.|+.+|.++++.++..++.+|.+++...+..+..+.+.|+++.|+.++.+ .+..++..+.
T Consensus 84 Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~-~~~~~~~~a~ 161 (644)
T 2z6h_A 84 LSHHRE-GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAITT 161 (644)
T ss_dssp HTTSHH-HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC-CCHHHHHHHH
T ss_pred HhcChh-hHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCc-CCHHHHHHHH
Confidence 998766 55788889999999999999999999999999999997766666777889999999999985 4567888888
Q ss_pred HHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhh
Q 000124 281 DALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAP 360 (2138)
Q Consensus 281 ~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~ 360 (2138)
.+|.+++..+++.+..+.+.|+++.|++++.+.+.
T Consensus 162 ~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~--------------------------------------------- 196 (644)
T 2z6h_A 162 DCLQILAYGNQESKLIILASGGPQALVNIMRTYTY--------------------------------------------- 196 (644)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCC---------------------------------------------
T ss_pred HHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCCh---------------------------------------------
Confidence 89999998778899889888888888887755321
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHH
Q 000124 361 VADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGL 440 (2138)
Q Consensus 361 ~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~L 440 (2138)
+..+..++.+|.+++.++.++..+.+.++++.|+.+
T Consensus 197 --------------------------------------------~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~l 232 (644)
T 2z6h_A 197 --------------------------------------------EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLH 232 (644)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTT
T ss_pred --------------------------------------------HHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHH
Confidence 113445555666666666667777788899999999
Q ss_pred HccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchH
Q 000124 441 ITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPP 520 (2138)
Q Consensus 441 L~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~ 520 (2138)
+...+..++..++.+|.+++...+. .....++++.|++++++.++.++..++++|++|+..+++++..+.+.|+++.
T Consensus 233 l~~~~~~~~~~a~~~L~nL~~~~~~---~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~ 309 (644)
T 2z6h_A 233 LTDPSQRLVQNCLWTLRNLSDAATK---QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA 309 (644)
T ss_dssp TTCSCHHHHHHHHHHHHHHGGGCTT---CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHhhcchh---hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHH
Confidence 9999999999999999999986432 1233588999999999999999999999999999977788999999999999
Q ss_pred HHHHhhhC-C-HHHHHHHHHHHHHHhcCCh---hHHHHHHHcCCcchhhhccccCC-hhHHHHHHHHHHHHHHhhchhhH
Q 000124 521 LVQLLEAG-S-QKAREVAAHVLWILCCHSE---DIRACVESAGAVPAFLWLLKSGG-PKGQDASAMALTKLIRAADSATI 594 (2138)
Q Consensus 521 LV~LLks~-d-~~vre~Aa~aL~nLs~~sd---~~r~~I~e~GaI~aLv~LLkS~~-~evq~~Aa~AL~nLs~~~e~~aI 594 (2138)
|+++|.+. + +.++..++++|+||+.+.. ..+..+.+.|+++.|++++++++ +.++..++++|+|++.+++
T Consensus 310 Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~---- 385 (644)
T 2z6h_A 310 LVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA---- 385 (644)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG----
T ss_pred HHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHH----
Confidence 99999874 3 8999999999999987433 35666778999999999999875 6899999999999974321
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHH--HhhcChhhh
Q 000124 595 NQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLAD--LFSMRQDIC 672 (2138)
Q Consensus 595 ~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALan--L~s~~~e~r 672 (2138)
.+ ..+.+.|+++.|+.++++++.++|..|++++.| +..
T Consensus 386 -------------~~---------------------~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~------ 425 (644)
T 2z6h_A 386 -------------NH---------------------APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE------ 425 (644)
T ss_dssp -------------GH---------------------HHHHHTTHHHHHHHHHHHHHHHHTTC----------CC------
T ss_pred -------------HH---------------------HHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcc------
Confidence 00 123456789999999998899999999998776 221
Q ss_pred hhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhh
Q 000124 673 GSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLL 752 (2138)
Q Consensus 673 ~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa 752 (2138)
|+ .++.++..++.+|++|+. .. .++..+.+.|++++|+++|.+.+++++..|+.+|++++
T Consensus 426 ------~~----------~~~~v~~~a~~aL~~La~--~~--~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~ 485 (644)
T 2z6h_A 426 ------GV----------RMEEIVEGCTGALHILAR--DV--HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 485 (644)
T ss_dssp ------SS----------CHHHHHHHHHHHHHHHTT--SH--HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred ------cc----------cHHHHHHHHHHHHHHHhc--CH--HHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 11 245688899999999987 33 67778889999999999999999999999999999999
Q ss_pred CCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcC
Q 000124 753 SDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHF 796 (2138)
Q Consensus 753 ~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~ 796 (2138)
.+++.+..+.+.|+++.|+.++.++++++|..|+++|.+++.+.
T Consensus 486 ~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~ 529 (644)
T 2z6h_A 486 QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 529 (644)
T ss_dssp TSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTS
T ss_pred cCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999865
No 9
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.98 E-value=1.4e-30 Score=334.41 Aligned_cols=414 Identities=16% Similarity=0.166 Sum_probs=344.7
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhhhc-cchhhHHhhhchhHHHHHHHhc-CCchhhHHHHHHHHHHHhhcCchhHH
Q 000124 433 AKKVLIGLITMATADVREYLILSLTKLCRR-EVGIWEAIGKREGIQLLISLLG-LSSEQHQEYAVQLIAILTEQVDDSKW 510 (2138)
Q Consensus 433 gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~-s~~~~~~I~e~ggIp~LV~LL~-s~d~~Vr~~Aa~aL~nLa~~s~e~r~ 510 (2138)
.++-++..+.+++.+.|..|+..++.+.+. .......+++.|+||.|+++|+ ++++.+|..|+++|+||+.++++++.
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 377889999999999999999999986543 2233467789999999999997 45688999999999999998889999
Q ss_pred HHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCCh-----hHHHHHHHHHHHH
Q 000124 511 AITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGP-----KGQDASAMALTKL 585 (2138)
Q Consensus 511 ~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~-----evq~~Aa~AL~nL 585 (2138)
.+++.|++|.|+++|+++++++++.|+++|+||+.+++..|..+.+.|+++.|+.++.+.+. ..++.++++|.|+
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999889999999999999999999987553 4677888888888
Q ss_pred HHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHh
Q 000124 586 IRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLF 665 (2138)
Q Consensus 586 s~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~ 665 (2138)
+.... ..... ....++++.|+.++++++++++..|+++|.+|+
T Consensus 218 ~~~~~-------------~~~~~------------------------~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~ 260 (510)
T 3ul1_B 218 CRNKN-------------PAPPL------------------------DAVEQILPTLVRLLHHNDPEVLADSCWAISYLT 260 (510)
T ss_dssp HCCCS-------------SCCCH------------------------HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred hhccc-------------chhHH------------------------HHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 74321 00000 011346899999999999999999999999999
Q ss_pred hcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHH
Q 000124 666 SMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAV 745 (2138)
Q Consensus 666 s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl 745 (2138)
....+....+.+.|+++.|+.+|++++..++..|+++|+|++... +..+..+.+.|++++|+.+|.+++.+++..|+
T Consensus 261 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~---~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~ 337 (510)
T 3ul1_B 261 DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT---DEQTQKVIDAGALAVFPSLLTNPKTNIQKEAT 337 (510)
T ss_dssp SSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC---HHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHH
T ss_pred hchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCC---HHHHHHHhhccchHHHHHHhcCCCHHHHHHHH
Confidence 977788888899999999999999999999999999999998632 36777889999999999999999999999999
Q ss_pred HHHHHhhC-CchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCC
Q 000124 746 AALANLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDM 824 (2138)
Q Consensus 746 ~ALaNLa~-~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~ 824 (2138)
++|+|++. +++.+..+.+.|+++.|+.++.+++.++|+.|+++|+|++.... ......+...|++++|+++|++.+
T Consensus 338 ~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~--~~~~~~L~~~g~i~~L~~LL~~~d- 414 (510)
T 3ul1_B 338 WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGT--VEQIVYLVHCGIIEPLMNLLSAKD- 414 (510)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCC--HHHHHHHHHTTCHHHHHHGGGCSC-
T ss_pred HHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCC--HHHHHHHHHCCCHHHHHHHhcCCC-
Confidence 99999987 56667788899999999999999999999999999999998642 334445667899999999997654
Q ss_pred CchhHHHHHHHHHHHhhcccCCcccCCcccccccCCCchHHHHHhhhcCChHHHHHHHHHHHHhhcc
Q 000124 825 NGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGD 891 (2138)
Q Consensus 825 ~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~AieiL~~L~~~ 891 (2138)
......++++|.++....+..... .......+..+.++.|..+..++++.++.+|..+|.+++..
T Consensus 415 -~~i~~~~L~aL~nil~~~~~~~~~-~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~ 479 (510)
T 3ul1_B 415 -TKIIQVILDAISNIFQAAEKLGET-EKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSV 479 (510)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTTTCH-HHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred -HHHHHHHHHHHHHHHHHhHhccch-HHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 456889999999886421111100 01111223456799999999999999999999999999874
No 10
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.97 E-value=6.9e-30 Score=329.16 Aligned_cols=414 Identities=16% Similarity=0.161 Sum_probs=344.5
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhhh-ccchhhHHhhhchhHHHHHHHhc-CCchhhHHHHHHHHHHHhhcCchhHH
Q 000124 433 AKKVLIGLITMATADVREYLILSLTKLCR-REVGIWEAIGKREGIQLLISLLG-LSSEQHQEYAVQLIAILTEQVDDSKW 510 (2138)
Q Consensus 433 gI~~LV~LL~sss~evq~~Aa~aL~~Ls~-~s~~~~~~I~e~ggIp~LV~LL~-s~d~~Vr~~Aa~aL~nLa~~s~e~r~ 510 (2138)
.++.++..+.+.+.+.|..++..++.+.. ........+++.|+||.|+++|. +.++.++..|+++|+|++.++.+.+.
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~ 156 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 156 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 46778899999999999999999988644 33334567789999999999996 55688999999999999998888889
Q ss_pred HHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCCh-----hHHHHHHHHHHHH
Q 000124 511 AITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGP-----KGQDASAMALTKL 585 (2138)
Q Consensus 511 ~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~-----evq~~Aa~AL~nL 585 (2138)
.+++.|++|.|+.+|.++++++++.|+++|+||+.+++..+..+.+.|++++|+.++.+.+. ..++.++++|.++
T Consensus 157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 236 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 236 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999889999999999999999999986543 4677888888888
Q ss_pred HHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHh
Q 000124 586 IRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLF 665 (2138)
Q Consensus 586 s~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~ 665 (2138)
+..... .... ....|+++.|+.++++++++++..|+++|.+++
T Consensus 237 ~~~~~~-------------~~~~------------------------~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~ 279 (529)
T 3tpo_A 237 CRNKNP-------------APPL------------------------DAVEQILPTLVRLLHHNDPEVLADSCWAISYLT 279 (529)
T ss_dssp HCCCTT-------------CCCH------------------------HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred Hhcccc-------------hhhH------------------------HHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 743210 0000 012346899999999999999999999999999
Q ss_pred hcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHH
Q 000124 666 SMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAV 745 (2138)
Q Consensus 666 s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl 745 (2138)
....+....+.+.|+++.|+.+|.+.++.++..|+++|+|++.+. +..+..+.+.|++++|+.+|.+++.+++.+|+
T Consensus 280 ~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~---~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~ 356 (529)
T 3tpo_A 280 DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT---DEQTQKVIDAGALAVFPSLLTNPKTNIQKEAT 356 (529)
T ss_dssp SSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC---HHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHH
T ss_pred hhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccc---hHHHHHHhhcccHHHHHHHHcCCCHHHHHHHH
Confidence 977888888999999999999999999999999999999998632 36777899999999999999999999999999
Q ss_pred HHHHHhhC-CchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCC
Q 000124 746 AALANLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDM 824 (2138)
Q Consensus 746 ~ALaNLa~-~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~ 824 (2138)
++|+|++. ++..+..+.+.|++|.|+.++.+++.++|..|+|+|+|++.... ......+...|++++|+++|++.+
T Consensus 357 ~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~--~~~~~~l~~~g~i~~L~~LL~~~d- 433 (529)
T 3tpo_A 357 WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGT--VEQIVYLVHCGIIEPLMNLLSAKD- 433 (529)
T ss_dssp HHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC--HHHHHHHHHTTCHHHHHHGGGCSC-
T ss_pred HHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC--HHHHHHHHHCcCHHHHHHHhcCCC-
Confidence 99999987 56667788899999999999999999999999999999998642 334445667899999999997654
Q ss_pred CchhHHHHHHHHHHHhhcccCCcccCCcccccccCCCchHHHHHhhhcCChHHHHHHHHHHHHhhcc
Q 000124 825 NGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGD 891 (2138)
Q Consensus 825 ~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~AieiL~~L~~~ 891 (2138)
......++.+|.++....+..... .......+..+.++.|..++.++++.++.+|..+|.+++..
T Consensus 434 -~~i~~~~L~aL~nil~~~~~~~~~-~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~ 498 (529)
T 3tpo_A 434 -TKIIQVILDAISNIFQAAEKLGET-EKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSV 498 (529)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTTTCH-HHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC--
T ss_pred -HHHHHHHHHHHHHHHHHhHhccCh-HHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 456889999999886421110000 11111223456799999999999999999999999999874
No 11
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.97 E-value=2.1e-29 Score=323.50 Aligned_cols=397 Identities=14% Similarity=0.151 Sum_probs=344.5
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHHHhhcCch--hHHHHhhhchHHHHHHHHcc-CCHHHHHHHHHHHHHhhhccchhhHH
Q 000124 393 DILVMLLKPHDNKLVQERVLEAMASLYGNIF--LSQWVSHAEAKKVLIGLITM-ATADVREYLILSLTKLCRREVGIWEA 469 (2138)
Q Consensus 393 ~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~--~~~~L~e~~gI~~LV~LL~s-ss~evq~~Aa~aL~~Ls~~s~~~~~~ 469 (2138)
+-++..+.+.+.+ .|..++.++..+..... --..+.+.|+++.|+.+|.. +++++|..|+++|.+++.++++....
T Consensus 60 ~~~v~~l~s~d~~-~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 60 EDIVKGINSNNLE-SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHTSSCHH-HHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHhcCCCHH-HHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5677778888775 89999999988854332 23567788999999999975 45889999999999999988899999
Q ss_pred hhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhC-----CHHHHHHHHHHHHHHh
Q 000124 470 IGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG-----SQKAREVAAHVLWILC 544 (2138)
Q Consensus 470 I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~-----d~~vre~Aa~aL~nLs 544 (2138)
+++.|+||.|+++|++++..+|+.|+++|+||+.++++.|..+.+.|++++|+.+|.+. ....++.++++|.+++
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999997788999999999999999999765 3467889999999999
Q ss_pred cCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh--------chhhHHHHHHHhcCCCcchHHHHHHHH
Q 000124 545 CHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--------DSATINQLLALLLGDSPSSKAHVIKVL 616 (2138)
Q Consensus 545 ~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~--------e~~aI~~Li~LL~~~d~~V~~~A~~AL 616 (2138)
.+.+.........++++.|+.++++++++++..++++|.+|+... +.++++.|++++.+.+..++..+++++
T Consensus 219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL 298 (510)
T 3ul1_B 219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 298 (510)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHH
Confidence 866555555555788999999999999999999999999998653 357899999999999999999999999
Q ss_pred HHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHH
Q 000124 617 GHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVA 696 (2138)
Q Consensus 617 ~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk 696 (2138)
++++.. .+.....+.+.|+++.|+.+++++++++|+.|+++|.||+.++++.+..+.+.|+++.|+.++++++..+|
T Consensus 299 ~nl~~~---~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~ 375 (510)
T 3ul1_B 299 GNIVTG---TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ 375 (510)
T ss_dssp HHHTTS---CHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred HHhhcC---CHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHH
Confidence 998643 23344556788999999999999999999999999999999899999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-------CchHHHHHHhcCcHHH
Q 000124 697 TQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-------DPDIAAEVLLEDVVSA 769 (2138)
Q Consensus 697 ~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~-------~~e~r~~Ii~~g~L~~ 769 (2138)
..|+++|.|++..... .++..+.+.|++++|+++|++.+++++..++.+|.|+.. ....+..+.+.|++..
T Consensus 376 ~~Aa~aL~Nl~~~~~~--~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ 453 (510)
T 3ul1_B 376 KEAAWAITNYTSGGTV--EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDK 453 (510)
T ss_dssp HHHHHHHHHHHHHCCH--HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHccCCH--HHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHH
Confidence 9999999999873333 567778999999999999999999999999999999853 2234566888999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhhhc
Q 000124 770 LTRVLAEGTSEGKKNASRALHQLLKH 795 (2138)
Q Consensus 770 LV~LL~~~~~~Vr~~Aa~AL~nL~~~ 795 (2138)
|..+..+.+++++++|..+|.+....
T Consensus 454 ie~Lq~~~n~~i~~~A~~iie~yf~~ 479 (510)
T 3ul1_B 454 IEALQRHENESVYKASLNLIEKYFSV 479 (510)
T ss_dssp HHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999877653
No 12
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.97 E-value=9.1e-29 Score=318.72 Aligned_cols=396 Identities=14% Similarity=0.150 Sum_probs=344.1
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHHHhhcCc--hhHHHHhhhchHHHHHHHHcc-CCHHHHHHHHHHHHHhhhccchhhHH
Q 000124 393 DILVMLLKPHDNKLVQERVLEAMASLYGNI--FLSQWVSHAEAKKVLIGLITM-ATADVREYLILSLTKLCRREVGIWEA 469 (2138)
Q Consensus 393 ~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~--~~~~~L~e~~gI~~LV~LL~s-ss~evq~~Aa~aL~~Ls~~s~~~~~~ 469 (2138)
+-++..+.+.+.+ .+..++..+..+.+.. .....+.+.|+++.|+.++.. .++++|..|+++|.+++.+++.....
T Consensus 79 ~~lv~~l~s~d~~-~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~ 157 (529)
T 3tpo_A 79 EDIVKGINSNNLE-SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 157 (529)
T ss_dssp HHHHHHHTSSCHH-HHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHhcCCCHH-HHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5667777777765 8889999998875433 234567888999999999975 45889999999999999988888889
Q ss_pred hhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhC-----CHHHHHHHHHHHHHHh
Q 000124 470 IGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG-----SQKAREVAAHVLWILC 544 (2138)
Q Consensus 470 I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~-----d~~vre~Aa~aL~nLs 544 (2138)
+++.|++|.|+.++.+++..+++.|+++|+||+.++++.|..+.+.|++++|+.+|... ....++.++++|.+++
T Consensus 158 vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 237 (529)
T 3tpo_A 158 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 237 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998889999999999999999999765 3467889999999999
Q ss_pred cCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh--------chhhHHHHHHHhcCCCcchHHHHHHHH
Q 000124 545 CHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--------DSATINQLLALLLGDSPSSKAHVIKVL 616 (2138)
Q Consensus 545 ~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~--------e~~aI~~Li~LL~~~d~~V~~~A~~AL 616 (2138)
.+.+.........++++.|+.++.+++++++..++++|.+++... +.++++.|+++|.+.+..++..++.+|
T Consensus 238 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL 317 (529)
T 3tpo_A 238 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 317 (529)
T ss_dssp CCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred hcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHH
Confidence 876655555555788999999999999999999999999998653 357899999999999999999999999
Q ss_pred HHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHH
Q 000124 617 GHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVA 696 (2138)
Q Consensus 617 ~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk 696 (2138)
++++.. .+.....+.+.|+++.|+.++++++++++..|+++|.||+.++++.+..+.+.|+++.|+.++.+++..++
T Consensus 318 ~nl~~~---~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~ 394 (529)
T 3tpo_A 318 GNIVTG---TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ 394 (529)
T ss_dssp HHHTTS---CHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred HHHHcc---chHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHH
Confidence 998642 33344556788999999999999999999999999999999889999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-------CchHHHHHHhcCcHHH
Q 000124 697 TQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-------DPDIAAEVLLEDVVSA 769 (2138)
Q Consensus 697 ~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~-------~~e~r~~Ii~~g~L~~ 769 (2138)
..|++||.|++.+... .+...+.+.|++++|+++|++.+++++..++.+|.|+.. .+..+..+.+.|++..
T Consensus 395 ~~A~~aL~nl~~~~~~--~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ 472 (529)
T 3tpo_A 395 KAAAWAITNYTSGGTV--EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDK 472 (529)
T ss_dssp HHHHHHHHHHHHHSCH--HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHcCCCH--HHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHH
Confidence 9999999999873322 566778999999999999999999999999999999853 2234567889999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhhh
Q 000124 770 LTRVLAEGTSEGKKNASRALHQLLK 794 (2138)
Q Consensus 770 LV~LL~~~~~~Vr~~Aa~AL~nL~~ 794 (2138)
|..+..+.+.+++++|..+|.+.-.
T Consensus 473 ie~Lq~~~n~~i~~~A~~iie~yf~ 497 (529)
T 3tpo_A 473 IEALQRHENESVYKASLNLIEKYFS 497 (529)
T ss_dssp HTGGGGCSSHHHHHHHHHHHHHHC-
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 9999999999999999999987654
No 13
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.97 E-value=3.8e-28 Score=311.51 Aligned_cols=403 Identities=15% Similarity=0.125 Sum_probs=349.0
Q ss_pred chHHHHHHHHccCCHHHHHHHHHHHHHhhhccc-hhhHHhhhchhHHHHHHHhcCCc-hhhHHHHHHHHHHHhhcCchhH
Q 000124 432 EAKKVLIGLITMATADVREYLILSLTKLCRREV-GIWEAIGKREGIQLLISLLGLSS-EQHQEYAVQLIAILTEQVDDSK 509 (2138)
Q Consensus 432 ~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~-~~~~~I~e~ggIp~LV~LL~s~d-~~Vr~~Aa~aL~nLa~~s~e~r 509 (2138)
..++.++.++.+++++++..|+.+|.++..... .....+.+.|++|.|++++.+++ +.+|..|+++|++++..+++++
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 458889999999999999999999999866543 55677888999999999999886 8999999999999999778899
Q ss_pred HHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhcc-ccCChhHHHHHHHHHHHHHHh
Q 000124 510 WAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLL-KSGGPKGQDASAMALTKLIRA 588 (2138)
Q Consensus 510 ~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LL-kS~~~evq~~Aa~AL~nLs~~ 588 (2138)
..+...|+++.|+.+|.++++.+++.|+++|++|+.+.+..+..+.+.|+++.|+.++ .+.++.+++.++++|.+|+..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999998888899999999999999999 677899999999999999976
Q ss_pred h-------chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHH
Q 000124 589 A-------DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVL 661 (2138)
Q Consensus 589 ~-------e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~AL 661 (2138)
. ..+.++.|++++.+.++.++..++++|++++.. .+.....+.+.|+++.|+.+++++++.++..|+++|
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~---~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L 310 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTV 310 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS---CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC---CHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHH
Confidence 2 146899999999999999999999999998643 222223456779999999999999999999999999
Q ss_pred HHHhhcChhhhhhhhhCCCHHHHHHHhccC-CHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHH
Q 000124 662 ADLFSMRQDICGSLATDEIVNPCMRLLTSN-TQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDA 740 (2138)
Q Consensus 662 anL~s~~~e~r~~Ive~GaV~~Lv~LL~dg-s~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~V 740 (2138)
.+|+.+++.....+.+.|+++.|+.+|.++ ++.++..|+++|+|++... . .....+.+.|++++|+.+|.+++.++
T Consensus 311 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~-~--~~~~~~~~~~~i~~L~~lL~~~~~~v 387 (528)
T 4b8j_A 311 GNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGN-K--DQIQAVINAGIIGPLVNLLQTAEFDI 387 (528)
T ss_dssp HHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSC-H--HHHHHHHHTTCHHHHHHHHHHSCHHH
T ss_pred HHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCC-H--HHHHHHHHCCCHHHHHHHHhcCCHHH
Confidence 999998888889999999999999999998 9999999999999999732 2 45667888999999999999999999
Q ss_pred HHHHHHHHHHhhC--CchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCC--------chhhhhhhhhhh
Q 000124 741 AETAVAALANLLS--DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPV--------GDVLKGNAQCRF 810 (2138)
Q Consensus 741 r~eAl~ALaNLa~--~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~--------~d~i~~~i~~~g 810 (2138)
+.+|+++|+|++. +++.+..+.+.|++++|+.++.+.+++++..+.++|.+|+...+. ...+...+...+
T Consensus 388 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 467 (528)
T 4b8j_A 388 KKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAE 467 (528)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCC
Confidence 9999999999986 477888899999999999999999999999999999999875321 112445555678
Q ss_pred hHHHHHHhhccCCCCchhHHHHHHHHHHHhhc
Q 000124 811 VVLTLVDSLNAMDMNGTDVADALEVVALLART 842 (2138)
Q Consensus 811 av~~LV~LL~s~~~~~~~~~~AL~ALa~La~~ 842 (2138)
++.++..+.... +...+..|...+..+...
T Consensus 468 ~~~~l~~L~~~~--~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 468 GLEKIENLQSHD--NNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp HHHHHHHGGGCS--SHHHHHHHHHHHHHHCC-
T ss_pred cHHHHHHHHcCC--CHHHHHHHHHHHHHHCCC
Confidence 899999987644 344578888888777643
No 14
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.96 E-value=1.5e-28 Score=316.54 Aligned_cols=361 Identities=17% Similarity=0.207 Sum_probs=301.7
Q ss_pred hhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhc-Cchh
Q 000124 430 HAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQ-VDDS 508 (2138)
Q Consensus 430 e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~-s~e~ 508 (2138)
..+.++.|+.+|.++++++|..|+.+|.+++..+.+++..|.+.|+||+|+++|++++..+|+.|+++|+||+.+ ++++
T Consensus 46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH
Confidence 456799999999999999999999999999998789999999999999999999999999999999999999985 5899
Q ss_pred HHHHHhcCCchHHHHHhhh-CCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccc------------------c
Q 000124 509 KWAITAAGGIPPLVQLLEA-GSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLK------------------S 569 (2138)
Q Consensus 509 r~~I~~aGaIp~LV~LLks-~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLk------------------S 569 (2138)
|..+.+.|++|+|+++|++ .+.++++.++++|+||+. .+.++..+.+ ++++.|++++. +
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhccccccccccccccccccc
Confidence 9999999999999999998 588999999999999998 5667777774 57999998761 2
Q ss_pred CChhHHHHHHHHHHHHHHhhc---------hhhHHHHHHHhcC------CCcchHHHHHHHHHHHHhhhcch----H-HH
Q 000124 570 GGPKGQDASAMALTKLIRAAD---------SATINQLLALLLG------DSPSSKAHVIKVLGHVLTMALQE----D-LV 629 (2138)
Q Consensus 570 ~~~evq~~Aa~AL~nLs~~~e---------~~aI~~Li~LL~~------~d~~V~~~A~~AL~~La~~~~~~----d-~v 629 (2138)
.++.++++|+++|.||+.+.+ .+.++.|+.+++. .+....+.+..+|++|+...... + ..
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 357999999999999986531 4567899999874 34567788899999887432110 0 00
Q ss_pred -----------------HhhhcccchhhHHHHhhc-CCCHHHHHHHHHHHHHHhhcC----hhhhhhhhhCCCHHHHHHH
Q 000124 630 -----------------QKGSAANKGLRSLVQVLN-SSNEENQEYAASVLADLFSMR----QDICGSLATDEIVNPCMRL 687 (2138)
Q Consensus 630 -----------------~~~l~~~GaI~aLV~LLk-s~s~evre~Aa~ALanL~s~~----~e~r~~Ive~GaV~~Lv~L 687 (2138)
...+...++++.|+.+++ +.++++++.|+++|.||+.++ ...+..+.+.++++.|+++
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence 011233455677888996 458999999999999998754 2334455667999999999
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcC--------CHHHHHHHHHHHHHhhC-CchHH
Q 000124 688 LTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTS--------SIDAAETAVAALANLLS-DPDIA 758 (2138)
Q Consensus 688 L~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~--------s~~Vr~eAl~ALaNLa~-~~e~r 758 (2138)
|.++++.+++.|+++|.||+.. . .++..| ..|+++.|+.+|.++ +.+++..|+.+|.||.. +++.+
T Consensus 364 L~s~~~~v~~~A~~aL~nLs~~--~--~~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~ 438 (584)
T 3l6x_A 364 LTNEHERVVKAASGALRNLAVD--A--RNKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAA 438 (584)
T ss_dssp GGCSCHHHHHHHHHHHHHHHTT--C--SCHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHhCC--h--hHHHHH-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHH
Confidence 9999999999999999999973 2 455444 789999999999875 47888999999999965 78899
Q ss_pred HHHHhcCcHHHHHHHHhCC--CHHHHHHHHHHHHHhhhcCC
Q 000124 759 AEVLLEDVVSALTRVLAEG--TSEGKKNASRALHQLLKHFP 797 (2138)
Q Consensus 759 ~~Ii~~g~L~~LV~LL~~~--~~~Vr~~Aa~AL~nL~~~~~ 797 (2138)
+.+.+.|++++|+.++.++ .+.+++.|+++|++|+.+.+
T Consensus 439 ~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e 479 (584)
T 3l6x_A 439 KKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479 (584)
T ss_dssp HHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred HHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence 9999999999999999986 89999999999999998743
No 15
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.96 E-value=1.5e-27 Score=306.11 Aligned_cols=397 Identities=17% Similarity=0.202 Sum_probs=346.4
Q ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHhhcCc--hhHHHHhhhchHHHHHHHHccCC-HHHHHHHHHHHHHhhhccchhhH
Q 000124 392 EDILVMLLKPHDNKLVQERVLEAMASLYGNI--FLSQWVSHAEAKKVLIGLITMAT-ADVREYLILSLTKLCRREVGIWE 468 (2138)
Q Consensus 392 e~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~--~~~~~L~e~~gI~~LV~LL~sss-~evq~~Aa~aL~~Ls~~s~~~~~ 468 (2138)
.+.|+..+.+.+.+ ++..++.+|.++.... .....+...++++.|+.++.+.+ +.++..|+.+|.+++.++++.+.
T Consensus 76 l~~lv~~L~s~~~~-~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 154 (528)
T 4b8j_A 76 LPAMIGGVYSDDNN-LQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTK 154 (528)
T ss_dssp HHHHHHHHTSSCHH-HHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHcCCCHH-HHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 37788888877654 8999999999995443 45566788899999999999877 99999999999999998788888
Q ss_pred HhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHh-hhCCHHHHHHHHHHHHHHhcCC
Q 000124 469 AIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLL-EAGSQKAREVAAHVLWILCCHS 547 (2138)
Q Consensus 469 ~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LL-ks~d~~vre~Aa~aL~nLs~~s 547 (2138)
.+.+.|+++.|+.++.++++.++..|+++|++|+..++..+..+...|++++|+.+| .+.++.++..++++|.+|+.+.
T Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~ 234 (528)
T 4b8j_A 155 VVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK 234 (528)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS
T ss_pred HHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999987778889999999999999999 5679999999999999999864
Q ss_pred hhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh--------chhhHHHHHHHhcCCCcchHHHHHHHHHHH
Q 000124 548 EDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--------DSATINQLLALLLGDSPSSKAHVIKVLGHV 619 (2138)
Q Consensus 548 d~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~--------e~~aI~~Li~LL~~~d~~V~~~A~~AL~~L 619 (2138)
...+ .....++++.|+.++.++++.++..++++|++++... +.+.++.|+++|.+.++.++..++++|+++
T Consensus 235 ~~~~-~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl 313 (528)
T 4b8j_A 235 PQPS-FEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNI 313 (528)
T ss_dssp SCCC-HHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCc-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence 3322 2345899999999999999999999999999998653 246899999999999999999999999998
Q ss_pred HhhhcchHHHHhhhcccchhhHHHHhhcCC-CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHH
Q 000124 620 LTMALQEDLVQKGSAANKGLRSLVQVLNSS-NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQ 698 (2138)
Q Consensus 620 a~~~~~~d~v~~~l~~~GaI~aLV~LLks~-s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~ 698 (2138)
+.. .+.....+.+.|+++.|+.+++++ ++.++..|+++|.||+.++++....+.+.|+++.|+.+|.++++.++..
T Consensus 314 ~~~---~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~ 390 (528)
T 4b8j_A 314 VTG---DDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKE 390 (528)
T ss_dssp TTS---CHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHH
T ss_pred HcC---CHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHH
Confidence 752 222334456789999999999999 9999999999999999878888889999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCc------------hHHHHHHhcCc
Q 000124 699 SARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDP------------DIAAEVLLEDV 766 (2138)
Q Consensus 699 AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~------------e~r~~Ii~~g~ 766 (2138)
|+++|+|++..... ..+..+.+.|++++|+.+|.+.+++++..++.+|.++.... ..+..+.+.|+
T Consensus 391 a~~aL~nl~~~~~~--~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 468 (528)
T 4b8j_A 391 AAWAISNATSGGSH--DQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEG 468 (528)
T ss_dssp HHHHHHHHHHHSCH--HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTH
T ss_pred HHHHHHHHHcCCCH--HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCc
Confidence 99999999873222 56777889999999999999999999999999999997532 24667889999
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhhhc
Q 000124 767 VSALTRVLAEGTSEGKKNASRALHQLLKH 795 (2138)
Q Consensus 767 L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~ 795 (2138)
+..|..+..+.++++++.|.+++.++...
T Consensus 469 ~~~l~~L~~~~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 469 LEKIENLQSHDNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999998764
No 16
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.96 E-value=2.9e-28 Score=308.95 Aligned_cols=358 Identities=15% Similarity=0.177 Sum_probs=299.6
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHH
Q 000124 433 AKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAI 512 (2138)
Q Consensus 433 gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I 512 (2138)
.++.++.++.++++++|..|+.+|.+++.+++..+..+.+.|++|.|+++|+++++.++..|+++|+||+.++++++..+
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 46789999999999999999999999998877778889999999999999999999999999999999999778999999
Q ss_pred HhcCCchHHHHHhh-hCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhcc--------ccC--------ChhHH
Q 000124 513 TAAGGIPPLVQLLE-AGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLL--------KSG--------GPKGQ 575 (2138)
Q Consensus 513 ~~aGaIp~LV~LLk-s~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LL--------kS~--------~~evq 575 (2138)
.+.|++|+|+++|. ++++++++.++++|+||+.+ +..+..+.+ |+++.|+.++ +++ ++.++
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 99999999999999 88999999999999999987 678888888 9999999999 332 45677
Q ss_pred HHHHHHHHHHHHhh-------ch-hhHHHHHHHhcC------CCcchHHHHHHHHHHHHhhhc----chH----------
Q 000124 576 DASAMALTKLIRAA-------DS-ATINQLLALLLG------DSPSSKAHVIKVLGHVLTMAL----QED---------- 627 (2138)
Q Consensus 576 ~~Aa~AL~nLs~~~-------e~-~aI~~Li~LL~~------~d~~V~~~A~~AL~~La~~~~----~~d---------- 627 (2138)
+.|+++|+||+.++ +. ++++.|+.++.. .+..+.+.+..+|++++.... ...
T Consensus 161 ~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~ 240 (457)
T 1xm9_A 161 FNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240 (457)
T ss_dssp HHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred HHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccc
Confidence 79999999999763 23 889999999985 345667777777887752100 000
Q ss_pred ---------------------------------HHHhhhcccchhhHHHHhhcCC-CHHHHHHHHHHHHHHhhcChh---
Q 000124 628 ---------------------------------LVQKGSAANKGLRSLVQVLNSS-NEENQEYAASVLADLFSMRQD--- 670 (2138)
Q Consensus 628 ---------------------------------~v~~~l~~~GaI~aLV~LLks~-s~evre~Aa~ALanL~s~~~e--- 670 (2138)
.....+...|+++.|+.+++++ ++++++.|+++|.||+.++..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~ 320 (457)
T 1xm9_A 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320 (457)
T ss_dssp -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred cccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchH
Confidence 0011244677889999999765 799999999999999986543
Q ss_pred -h-hhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCC------HHHHH
Q 000124 671 -I-CGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSS------IDAAE 742 (2138)
Q Consensus 671 -~-r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s------~~Vr~ 742 (2138)
. +..+.+.|+++.|+++|.++++.++..|+++|.|++. .. ..+. ++..|++++|+++|..++ .++..
T Consensus 321 ~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~--~~--~~~~-~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~ 395 (457)
T 1xm9_A 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HP--LLHR-VMGNQVFPEVTRLLTSHTGNTSNSEDILS 395 (457)
T ss_dssp HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHT--SG--GGHH-HHHHHTHHHHHHTTTSCCSCSTTHHHHHH
T ss_pred HHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhc--CH--HHHH-HHHHhhhHHHHHhccCCCCCCCCcHHHHH
Confidence 2 2234468999999999999999999999999999987 22 4444 445689999999999864 46888
Q ss_pred HHHHHHHHhhC-CchHHHHHHhcCcHHHHHHHHhCC-CHHHHHHHHHHHHHhhhcCC
Q 000124 743 TAVAALANLLS-DPDIAAEVLLEDVVSALTRVLAEG-TSEGKKNASRALHQLLKHFP 797 (2138)
Q Consensus 743 eAl~ALaNLa~-~~e~r~~Ii~~g~L~~LV~LL~~~-~~~Vr~~Aa~AL~nL~~~~~ 797 (2138)
.++.+|.|+.. +++.+..+.+.|++++|++++.++ +++++++|+++|.++..+.+
T Consensus 396 ~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 396 SACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 99999999975 777888899999999999999999 99999999999999998754
No 17
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.96 E-value=2.6e-27 Score=304.36 Aligned_cols=404 Identities=14% Similarity=0.123 Sum_probs=347.0
Q ss_pred hchHHHHHHHHccCCHHHHHHHHHHHHHhhhcc-chhhHHhhhchhHHHHHHHhcCC-chhhHHHHHHHHHHHhhcCchh
Q 000124 431 AEAKKVLIGLITMATADVREYLILSLTKLCRRE-VGIWEAIGKREGIQLLISLLGLS-SEQHQEYAVQLIAILTEQVDDS 508 (2138)
Q Consensus 431 ~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s-~~~~~~I~e~ggIp~LV~LL~s~-d~~Vr~~Aa~aL~nLa~~s~e~ 508 (2138)
.+.++.++..+.+++++++..|+..|.++.... ......+.+.|++|.|++++.++ ++.+|..|+++|++++..+++.
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 356889999999999999999999999986542 34455677889999999999987 8999999999999999977788
Q ss_pred HHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHh
Q 000124 509 KWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA 588 (2138)
Q Consensus 509 r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~ 588 (2138)
+..+...|+++.|+.+|.++++.+++.|+++|++|+.+.+..+..+...|+++.|+.++.+.++.++..++++|++|+..
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 245 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 245 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Confidence 88888999999999999999999999999999999998888888889999999999999999999999999999999965
Q ss_pred h--------chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHH
Q 000124 589 A--------DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASV 660 (2138)
Q Consensus 589 ~--------e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~A 660 (2138)
. ..+.++.|+.++.++++.++..++++|++++... ++. ...+.+.|+++.|+.+++++++.++..|+++
T Consensus 246 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~--~~~-~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~ 322 (530)
T 1wa5_B 246 KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP--QEA-IQAVIDVRIPKRLVELLSHESTLVQTPALRA 322 (530)
T ss_dssp SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC--HHH-HHHHHHTTCHHHHHHGGGCSCHHHHHHHHHH
T ss_pred CCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC--HHH-HHHHHhcCcHHHHHHHHCCCChhhHHHHHHH
Confidence 3 1468999999999999999999999999987432 222 2334567899999999999999999999999
Q ss_pred HHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHH
Q 000124 661 LADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDA 740 (2138)
Q Consensus 661 LanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~V 740 (2138)
|.+|+.+++.....+.+.|+++.|+.+|.++++.++..|+++|++++...+ .....+.+.|+++.|+.+|.+++.++
T Consensus 323 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~---~~~~~~~~~~~l~~L~~lL~~~~~~v 399 (530)
T 1wa5_B 323 VGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNT---EQIQAVIDANLIPPLVKLLEVAEYKT 399 (530)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH---HHHHHHHHTTCHHHHHHHHHHSCHHH
T ss_pred HHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH---HHHHHHHHCCCHHHHHHHHhcCCHHH
Confidence 999998788888888999999999999999999999999999999986332 45556778999999999999999999
Q ss_pred HHHHHHHHHHhhC--Cc--hHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCC--------chhhhhhhhh
Q 000124 741 AETAVAALANLLS--DP--DIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPV--------GDVLKGNAQC 808 (2138)
Q Consensus 741 r~eAl~ALaNLa~--~~--e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~--------~d~i~~~i~~ 808 (2138)
+..|+++|+|++. .+ +....+.+.|+++.|+.++.+.++.++..|.++|.+++...+. ...+...+..
T Consensus 400 ~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~ 479 (530)
T 1wa5_B 400 KKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEK 479 (530)
T ss_dssp HHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHH
Confidence 9999999999976 34 6777888999999999999999999999999999999875321 1223444556
Q ss_pred hhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhc
Q 000124 809 RFVVLTLVDSLNAMDMNGTDVADALEVVALLART 842 (2138)
Q Consensus 809 ~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~~ 842 (2138)
.|++.+|..++.+.+ ...+..|..++..+-..
T Consensus 480 ~g~~~~L~~L~~~~~--~~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 480 AGGMEKIFNCQQNEN--DKIYEKAYKIIETYFGE 511 (530)
T ss_dssp TTHHHHHHGGGGCSC--HHHHHHHHHHHHHHSSS
T ss_pred cCcHHHHHHHHcCCC--HHHHHHHHHHHHHHCCc
Confidence 788999999886543 44578888888877653
No 18
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.96 E-value=5.2e-28 Score=305.27 Aligned_cols=362 Identities=18% Similarity=0.154 Sum_probs=297.3
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccC------------CHHHHHHHHHHHHHhh
Q 000124 393 DILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMA------------TADVREYLILSLTKLC 460 (2138)
Q Consensus 393 ~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~ss------------s~evq~~Aa~aL~~Ls 460 (2138)
+.|+..+.+.+.+ ...+.|..+..+++.+..+.+.|+++.|+.++... ++++|.+|+++|.+++
T Consensus 35 ~~l~~~~~~~~~~----~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~ 110 (458)
T 3nmz_A 35 YSLLSMLGTHDKD----DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNII 110 (458)
T ss_dssp ----------CCH----HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHH----HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHH
Confidence 4455555555543 36778888989998888999999999999999863 3699999999999999
Q ss_pred hccchhhHHhhhchhH----------HHHHHHhcCCc--hh-----hHH-------HHHHHHHHHhhcCchhHHHHHhcC
Q 000124 461 RREVGIWEAIGKREGI----------QLLISLLGLSS--EQ-----HQE-------YAVQLIAILTEQVDDSKWAITAAG 516 (2138)
Q Consensus 461 ~~s~~~~~~I~e~ggI----------p~LV~LL~s~d--~~-----Vr~-------~Aa~aL~nLa~~s~e~r~~I~~aG 516 (2138)
.++++......+.+.+ +.+++++.+.. .+ +++ .|+++|.|++. ++++|..+.+.|
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G 189 (458)
T 3nmz_A 111 HSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELG 189 (458)
T ss_dssp HHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTT
T ss_pred ccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCC
Confidence 9888877776666666 55667676542 12 333 89999999987 589999999999
Q ss_pred CchHHHHHhhh-----------CCHHHHHHHHHHHHHHhcCChhHHHHHHH-cCCcchhhhccccCChhHHHHHHHHHHH
Q 000124 517 GIPPLVQLLEA-----------GSQKAREVAAHVLWILCCHSEDIRACVES-AGAVPAFLWLLKSGGPKGQDASAMALTK 584 (2138)
Q Consensus 517 aIp~LV~LLks-----------~d~~vre~Aa~aL~nLs~~sd~~r~~I~e-~GaI~aLv~LLkS~~~evq~~Aa~AL~n 584 (2138)
++++|+.+|.. .++.+++.|+++|.||+.+++..+..+.. .|+||.|+.+++++++++++.++++|.|
T Consensus 190 ~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~n 269 (458)
T 3nmz_A 190 GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRN 269 (458)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999953 24778999999999999988778877754 5669999999999999999999999999
Q ss_pred HHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHh-hcCCCHHHHHHHHHHHHH
Q 000124 585 LIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQV-LNSSNEENQEYAASVLAD 663 (2138)
Q Consensus 585 Ls~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~L-Lks~s~evre~Aa~ALan 663 (2138)
|+...+ + ..+..+.+.|+++.|+.+ ++++++++++.|+.+|+|
T Consensus 270 Ls~~~~---------------~---------------------~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~n 313 (458)
T 3nmz_A 270 LSWRAD---------------V---------------------NSKKTLREVGSVKALMECALEVKKESTLKSVLSALWN 313 (458)
T ss_dssp HTSSCC---------------H---------------------HHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHH
T ss_pred HhcCCC---------------H---------------------HHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 974210 1 112335578999999997 566789999999999999
Q ss_pred HhhcChhhhhhhh-hCCCHHHHHHHhccCCH----HHHHHHHHHHHHhcCC--CCcccchhhhHHhcCChhhHHhhhhcC
Q 000124 664 LFSMRQDICGSLA-TDEIVNPCMRLLTSNTQ----MVATQSARALGALSRP--TKTKTTNKMSYIAEGDVKPLIKLAKTS 736 (2138)
Q Consensus 664 L~s~~~e~r~~Iv-e~GaV~~Lv~LL~dgs~----~Vk~~AA~ALanLa~s--~~~~d~~r~~I~~~G~V~~Lv~LL~s~ 736 (2138)
|+..+++++..+. ..|++++|+++|+++++ .++..|+++|.||+.. .. +.++..+.+.|++++|+.+|.++
T Consensus 314 Ls~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~--~~~~~~i~~~G~i~~Lv~LL~~~ 391 (458)
T 3nmz_A 314 LSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN--EDHRQILRENNCLQTLLQHLKSH 391 (458)
T ss_dssp HHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTHHHHHHHHSSCS
T ss_pred HccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCC--HHHHHHHHHcccHHHHHHHHcCC
Confidence 9986677788887 78999999999988765 4899999999999841 22 26888899999999999999999
Q ss_pred CHHHHHHHHHHHHHhh-CCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCC
Q 000124 737 SIDAAETAVAALANLL-SDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFP 797 (2138)
Q Consensus 737 s~~Vr~eAl~ALaNLa-~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~ 797 (2138)
+.+++++|+++|+||+ .+++.+..+.+.|++++|+.++..+++++++.|+++|.||+.+.|
T Consensus 392 ~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 392 SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 9999999999999999 478999999999999999999999999999999999999998764
No 19
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.96 E-value=2.8e-27 Score=295.07 Aligned_cols=400 Identities=14% Similarity=0.100 Sum_probs=339.1
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhhh--ccchhhHHhhhc-hhHHHHHHHhcCC-chhhHHHHHHHHHHHhhcCchh
Q 000124 433 AKKVLIGLITMATADVREYLILSLTKLCR--REVGIWEAIGKR-EGIQLLISLLGLS-SEQHQEYAVQLIAILTEQVDDS 508 (2138)
Q Consensus 433 gI~~LV~LL~sss~evq~~Aa~aL~~Ls~--~s~~~~~~I~e~-ggIp~LV~LL~s~-d~~Vr~~Aa~aL~nLa~~s~e~ 508 (2138)
.++.++..+.++++.++..|+..|..+.. .++... .+.+. |+++.|+++++++ ++.+|..|+++|++++..+.+.
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~-~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~ 99 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPID-EVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQ 99 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHH-HHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHH-HHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 36778889999999999999999998754 333333 44556 9999999999988 8999999999999999876777
Q ss_pred HHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhcccc-CChhHHHHHHHHHHHHHH
Q 000124 509 KWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKS-GGPKGQDASAMALTKLIR 587 (2138)
Q Consensus 509 r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS-~~~evq~~Aa~AL~nLs~ 587 (2138)
+..+.+.|+++.|+++|+++++.+|+.|+++|++++.+.+..+..+.+.|+++.|+.++++ .++.++..++++|++++.
T Consensus 100 ~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~ 179 (450)
T 2jdq_A 100 TRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCR 179 (450)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhC
Confidence 7778889999999999999999999999999999999888888888899999999999995 789999999999999996
Q ss_pred hh--------chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHH
Q 000124 588 AA--------DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAAS 659 (2138)
Q Consensus 588 ~~--------e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ 659 (2138)
.. ..+.++.|++++.++++.++..++++|++++... ++ ....+...|+++.|+.++++++++++..|++
T Consensus 180 ~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~--~~-~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~ 256 (450)
T 2jdq_A 180 GKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGP--ND-KIQAVIDAGVCRRLVELLMHNDYKVVSPALR 256 (450)
T ss_dssp CSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSS--HH-HHHHHHHTTTHHHHHHHTTCSCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCC--cH-HHHHHHHcCcHHHHHHHHCCCchhHHHHHHH
Confidence 53 1468999999999999999999999999986432 12 2233456789999999999999999999999
Q ss_pred HHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHH
Q 000124 660 VLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSID 739 (2138)
Q Consensus 660 ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~ 739 (2138)
+|.+++..+++....+.+.|+++.|+.+++++++.++..|+++|++++.+.+ .....+.+.|+++.|+.++.+++++
T Consensus 257 ~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~---~~~~~~~~~~~l~~L~~~l~~~~~~ 333 (450)
T 2jdq_A 257 AVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNR---AQIQTVIDANIFPALISILQTAEFR 333 (450)
T ss_dssp HHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCH---HHHHHHHHTTHHHHHHHHHHHSCHH
T ss_pred HHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH---HHHHHHHHCCCHHHHHHHHhcCCHH
Confidence 9999999777778888899999999999999999999999999999986322 4555677889999999999999999
Q ss_pred HHHHHHHHHHHhhC--CchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCC--------chhhhhhhhhh
Q 000124 740 AAETAVAALANLLS--DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPV--------GDVLKGNAQCR 809 (2138)
Q Consensus 740 Vr~eAl~ALaNLa~--~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~--------~d~i~~~i~~~ 809 (2138)
++.+|+++|+|++. +++....+.+.|+++.|+.++.+++++++..|+++|.+++...+. .+.+...+...
T Consensus 334 v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 413 (450)
T 2jdq_A 334 TRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEA 413 (450)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHc
Confidence 99999999999986 567777788899999999999999999999999999999875321 01233445557
Q ss_pred hhHHHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000124 810 FVVLTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2138)
Q Consensus 810 gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~ 841 (2138)
|++++|..++.+.+ ...+..|+.++.++-.
T Consensus 414 g~~~~l~~l~~~~~--~~v~~~a~~~l~~~~~ 443 (450)
T 2jdq_A 414 YGLDKIEFLQSHEN--QEIYQKAFDLIEHYFG 443 (450)
T ss_dssp HCHHHHHHHHCHHH--HHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHcCCC--HHHHHHHHHHHHHHCC
Confidence 78888888876543 3558888888887764
No 20
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.96 E-value=2.6e-27 Score=305.25 Aligned_cols=374 Identities=13% Similarity=0.133 Sum_probs=317.1
Q ss_pred cccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhc-CchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhc
Q 000124 384 EPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYG-NIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRR 462 (2138)
Q Consensus 384 ~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~-n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~ 462 (2138)
..|....+ +.|+.+|.+.+.+ +|..++.+|.+++. +.+++..+.+.++++.|+.+|.+++.++|..|+.+|.+++.+
T Consensus 43 ~~~~~~~i-~~LV~~L~s~~~~-~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~ 120 (584)
T 3l6x_A 43 PNWRQPEL-PEVIAMLGFRLDA-VKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFG 120 (584)
T ss_dssp CCCCCCCH-HHHHHHTTCSCHH-HHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSS
T ss_pred CCcccccH-HHHHHHHCCCCHH-HHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHcc
Confidence 34444444 8899999988764 89999999999974 778889999999999999999999999999999999999985
Q ss_pred -cchhhHHhhhchhHHHHHHHhcC-CchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhh--------------
Q 000124 463 -EVGIWEAIGKREGIQLLISLLGL-SSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLE-------------- 526 (2138)
Q Consensus 463 -s~~~~~~I~e~ggIp~LV~LL~s-~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLk-------------- 526 (2138)
+++++..|.+.|||+.|+++|++ .+..+++.++.+|+||+. +++++..+.+ +++|+|++++.
T Consensus 121 ~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~ 198 (584)
T 3l6x_A 121 RDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDC 198 (584)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC-------
T ss_pred CCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhcccccccccccccc
Confidence 57899999999999999999997 577899999999999998 6788998885 57999999872
Q ss_pred ----hCCHHHHHHHHHHHHHHhcCChhHHHHHHHc-CCcchhhhcccc------CChhHHHHHHHHHHHHHHhhc-----
Q 000124 527 ----AGSQKAREVAAHVLWILCCHSEDIRACVESA-GAVPAFLWLLKS------GGPKGQDASAMALTKLIRAAD----- 590 (2138)
Q Consensus 527 ----s~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~-GaI~aLv~LLkS------~~~evq~~Aa~AL~nLs~~~e----- 590 (2138)
..+.++++.|+++|+||+.++++.|..+.+. |.++.|+.++++ .+...++.|+++|.||+...+
T Consensus 199 k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~ 278 (584)
T 3l6x_A 199 KPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQ 278 (584)
T ss_dssp ---CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTT
T ss_pred cccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccc
Confidence 1257999999999999999888878877775 556799998875 456789999999999986511
Q ss_pred ----------------------------hhhHHHHHHHhc-CCCcchHHHHHHHHHHHHhhh-cchHHHHhhhcccchhh
Q 000124 591 ----------------------------SATINQLLALLL-GDSPSSKAHVIKVLGHVLTMA-LQEDLVQKGSAANKGLR 640 (2138)
Q Consensus 591 ----------------------------~~aI~~Li~LL~-~~d~~V~~~A~~AL~~La~~~-~~~d~v~~~l~~~GaI~ 640 (2138)
.++++.|+.+|+ ..++.+++.++++|.+|+... ......+..+.+.++++
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp 358 (584)
T 3l6x_A 279 AERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALS 358 (584)
T ss_dssp CCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHH
T ss_pred hhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHH
Confidence 135678899996 567889999999999997532 12233455567789999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccC--------CHHHHHHHHHHHHHhcCCCCc
Q 000124 641 SLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSN--------TQMVATQSARALGALSRPTKT 712 (2138)
Q Consensus 641 aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dg--------s~~Vk~~AA~ALanLa~s~~~ 712 (2138)
.|+.++.++++++++.|+++|.||+. ++.++..+ ..|+++.|+.+|.++ ++.+...|+++|+||....
T Consensus 359 ~Lv~LL~s~~~~v~~~A~~aL~nLs~-~~~~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~-- 434 (584)
T 3l6x_A 359 AIADLLTNEHERVVKAASGALRNLAV-DARNKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAEN-- 434 (584)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHT-TCSCHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhC-ChhHHHHH-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCC--
Confidence 99999999999999999999999998 56666655 779999999999886 4678999999999998643
Q ss_pred ccchhhhHHhcCChhhHHhhhhcC--CHHHHHHHHHHHHHhhCCchHHHHHHhcCc
Q 000124 713 KTTNKMSYIAEGDVKPLIKLAKTS--SIDAAETAVAALANLLSDPDIAAEVLLEDV 766 (2138)
Q Consensus 713 ~d~~r~~I~~~G~V~~Lv~LL~s~--s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~ 766 (2138)
+.++..+.+.|+|++|+.++.++ ++.+++.|+.+|+||..+.+.|..+.++|.
T Consensus 435 -~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr~~~kk~G~ 489 (584)
T 3l6x_A 435 -LEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEGW 489 (584)
T ss_dssp -HHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHHHHHHTTTC
T ss_pred -HHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHHHHHHHcCC
Confidence 26888899999999999999986 899999999999999999999999988664
No 21
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.96 E-value=3.7e-27 Score=302.98 Aligned_cols=402 Identities=15% Similarity=0.145 Sum_probs=346.1
Q ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHhhcC--chhHHHHhhhchHHHHHHHHccC-CHHHHHHHHHHHHHhhhccchhh
Q 000124 391 IEDILVMLLKPHDNKLVQERVLEAMASLYGN--IFLSQWVSHAEAKKVLIGLITMA-TADVREYLILSLTKLCRREVGIW 467 (2138)
Q Consensus 391 Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n--~~~~~~L~e~~gI~~LV~LL~ss-s~evq~~Aa~aL~~Ls~~s~~~~ 467 (2138)
..+.|+..+.+.+.+ ++..++.+|.++... ......+.+.++++.|+.++.+. ++.++..|+.+|.+++..+++..
T Consensus 88 ~i~~lv~~L~s~~~~-~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 88 ELPQMTQQLNSDDMQ-EQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp CHHHHHHHHSCSSHH-HHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHcCCCHH-HHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 347788888887654 899999999999654 23345677789999999999987 89999999999999999877788
Q ss_pred HHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCC
Q 000124 468 EAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHS 547 (2138)
Q Consensus 468 ~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~s 547 (2138)
..+.+.|+++.|+++++++++.+|..|+++|++|+..++..+..+...|+++.|+.+|.+.++.++..++++|.+|+.+.
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 246 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK 246 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Confidence 88888999999999999999999999999999999877788888899999999999999999999999999999999765
Q ss_pred hhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh--------chhhHHHHHHHhcCCCcchHHHHHHHHHHH
Q 000124 548 EDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--------DSATINQLLALLLGDSPSSKAHVIKVLGHV 619 (2138)
Q Consensus 548 d~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~--------e~~aI~~Li~LL~~~d~~V~~~A~~AL~~L 619 (2138)
+.........++++.|+.++.++++.++..++++|.+++... +.++++.|+.++.+.++.++..++++|+++
T Consensus 247 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l 326 (530)
T 1wa5_B 247 KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 326 (530)
T ss_dssp SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHH
Confidence 333334455899999999999999999999999999998652 247899999999999999999999999998
Q ss_pred HhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHH
Q 000124 620 LTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQS 699 (2138)
Q Consensus 620 a~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~A 699 (2138)
+... +.....+.+.|+++.|+.+++++++.++..|+++|.+|+.++++....+.+.|+++.|+.+|.++++.++..|
T Consensus 327 ~~~~---~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a 403 (530)
T 1wa5_B 327 VTGN---DLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEA 403 (530)
T ss_dssp TTSC---HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred HcCC---HHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence 6432 2223334567899999999999999999999999999998788888888999999999999999999999999
Q ss_pred HHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCch------------HHHHHHhcCcH
Q 000124 700 ARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPD------------IAAEVLLEDVV 767 (2138)
Q Consensus 700 A~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e------------~r~~Ii~~g~L 767 (2138)
+++|++++......+.....+.+.|++++|+.++.+.++.++..|+.+|.++....+ .+..+.+.|++
T Consensus 404 ~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 483 (530)
T 1wa5_B 404 CWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGM 483 (530)
T ss_dssp HHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcH
Confidence 999999986321101355567889999999999999999999999999999976322 35568889999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhhhcC
Q 000124 768 SALTRVLAEGTSEGKKNASRALHQLLKHF 796 (2138)
Q Consensus 768 ~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~ 796 (2138)
+.|..++.+.++.+++.|..+|.++....
T Consensus 484 ~~L~~L~~~~~~~v~~~a~~il~~~~~~~ 512 (530)
T 1wa5_B 484 EKIFNCQQNENDKIYEKAYKIIETYFGEE 512 (530)
T ss_dssp HHHHGGGGCSCHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence 99999999999999999999999988754
No 22
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.96 E-value=4.3e-27 Score=293.32 Aligned_cols=397 Identities=15% Similarity=0.153 Sum_probs=337.7
Q ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHhhc---CchhHHHHhhh-chHHHHHHHHccC-CHHHHHHHHHHHHHhhhccchh
Q 000124 392 EDILVMLLKPHDNKLVQERVLEAMASLYG---NIFLSQWVSHA-EAKKVLIGLITMA-TADVREYLILSLTKLCRREVGI 466 (2138)
Q Consensus 392 e~~LV~LL~s~~~e~vr~~Aa~AL~~L~~---n~~~~~~L~e~-~gI~~LV~LL~ss-s~evq~~Aa~aL~~Ls~~s~~~ 466 (2138)
.+.|+..+.+.+.+ +|..++.+|..+.. ++... .+.+. ++++.|+.++.++ ++.+|..++.+|.+++..+++.
T Consensus 22 l~~l~~~l~s~~~~-~r~~A~~~L~~l~~~~~~~~~~-~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~ 99 (450)
T 2jdq_A 22 TSDMIEMIFSKSPE-QQLSATQKFRKLLSKEPNPPID-EVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQ 99 (450)
T ss_dssp CHHHHHHHHSSCHH-HHHHHHHHHHHHHHSSSSCCHH-HHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHhcCCCHH-HHHHHHHHHHHHhcCCCCCcHH-HHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 36677777777654 89999999998743 33443 34555 8899999999988 8999999999999999976777
Q ss_pred hHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhh-CCHHHHHHHHHHHHHHhc
Q 000124 467 WEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA-GSQKAREVAAHVLWILCC 545 (2138)
Q Consensus 467 ~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks-~d~~vre~Aa~aL~nLs~ 545 (2138)
...+.+.|+++.|+++++++++.+|+.|+++|++++..+++.+..+...|+++.|+.++++ .+..++..++++|++++.
T Consensus 100 ~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~ 179 (450)
T 2jdq_A 100 TRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCR 179 (450)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhC
Confidence 7778889999999999999999999999999999999777888889999999999999996 689999999999999997
Q ss_pred CC-hhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh--------chhhHHHHHHHhcCCCcchHHHHHHHH
Q 000124 546 HS-EDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--------DSATINQLLALLLGDSPSSKAHVIKVL 616 (2138)
Q Consensus 546 ~s-d~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~--------e~~aI~~Li~LL~~~d~~V~~~A~~AL 616 (2138)
+. ...+..+. .++++.|+.+++++++.++..++++|.+++... +.+.++.|++++.+.++.++..++++|
T Consensus 180 ~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 258 (450)
T 2jdq_A 180 GKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAV 258 (450)
T ss_dssp CSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred CCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHH
Confidence 54 22222222 789999999999999999999999999998642 246899999999999999999999999
Q ss_pred HHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHH
Q 000124 617 GHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVA 696 (2138)
Q Consensus 617 ~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk 696 (2138)
++++... +.....+.+.|+++.|+.+++++++.+|..|+++|.+++.++++....+.+.|+++.|+.+++++++.+|
T Consensus 259 ~~l~~~~---~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~ 335 (450)
T 2jdq_A 259 GNIVTGD---DIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTR 335 (450)
T ss_dssp HHHTTSC---HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHH
T ss_pred HHHhhCC---hHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHH
Confidence 9986432 2223335567899999999999999999999999999998788888888999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCch------------HHHHHHhc
Q 000124 697 TQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPD------------IAAEVLLE 764 (2138)
Q Consensus 697 ~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e------------~r~~Ii~~ 764 (2138)
..|+++|++++..... .....+.+.|++++|+.++++++.+++..|+.+|.+++...+ ....+.+.
T Consensus 336 ~~a~~~L~~l~~~~~~--~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 413 (450)
T 2jdq_A 336 KEAAWAITNATSGGSA--EQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEA 413 (450)
T ss_dssp HHHHHHHHHHHHHCCH--HHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCH--HHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHc
Confidence 9999999999863222 455567788999999999999999999999999999986332 34567788
Q ss_pred CcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcC
Q 000124 765 DVVSALTRVLAEGTSEGKKNASRALHQLLKHF 796 (2138)
Q Consensus 765 g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~ 796 (2138)
|+++.|..++.+.+..+++.|..+|.++..+.
T Consensus 414 g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 445 (450)
T 2jdq_A 414 YGLDKIEFLQSHENQEIYQKAFDLIEHYFGTE 445 (450)
T ss_dssp HCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence 99999999998889999999999999988653
No 23
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.95 E-value=1.5e-26 Score=293.26 Aligned_cols=361 Identities=16% Similarity=0.179 Sum_probs=298.1
Q ss_pred hHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHH
Q 000124 475 GIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACV 554 (2138)
Q Consensus 475 gIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I 554 (2138)
.+|.|+++|+++++.+|..|+++|.+|+.+++..+..+.+.|++|.|+++|+++++.+++.|+++|+||+.++++++..+
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 47899999999999999999999999998777788899999999999999999999999999999999999879999999
Q ss_pred HHcCCcchhhhccc-cCChhHHHHHHHHHHHHHHhhc------hhhHHHHHHHhc--------CC--------CcchHHH
Q 000124 555 ESAGAVPAFLWLLK-SGGPKGQDASAMALTKLIRAAD------SATINQLLALLL--------GD--------SPSSKAH 611 (2138)
Q Consensus 555 ~e~GaI~aLv~LLk-S~~~evq~~Aa~AL~nLs~~~e------~~aI~~Li~LL~--------~~--------d~~V~~~ 611 (2138)
.+.|+++.|+++++ ++++++++.++++|+||+.+++ .++++.|++++. +. +.++...
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~ 162 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHH
Confidence 99999999999999 8899999999999999997632 278999999993 22 3345568
Q ss_pred HHHHHHHHHhhhcchHHHHhhhccc-chhhHHHHhhcC------CCHHHHHHHHHHHHHHhhc-----------------
Q 000124 612 VIKVLGHVLTMALQEDLVQKGSAAN-KGLRSLVQVLNS------SNEENQEYAASVLADLFSM----------------- 667 (2138)
Q Consensus 612 A~~AL~~La~~~~~~d~v~~~l~~~-GaI~aLV~LLks------~s~evre~Aa~ALanL~s~----------------- 667 (2138)
+.++|++|+.. ++ .+..+.+. |+++.|+.++++ .+..+++.++++|.||+..
T Consensus 163 a~~aL~nLs~~---~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~ 238 (457)
T 1xm9_A 163 ATGCLRNLSSA---DA-GRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR 238 (457)
T ss_dssp HHHHHHHHTTS---HH-HHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred HHHHHHHHccC---HH-HHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccc
Confidence 99999998753 33 34456676 999999999986 3567889999999998731
Q ss_pred ---------------------------------ChhhhhhhhhCCCHHHHHHHhccC-CHHHHHHHHHHHHHhcCCCCcc
Q 000124 668 ---------------------------------RQDICGSLATDEIVNPCMRLLTSN-TQMVATQSARALGALSRPTKTK 713 (2138)
Q Consensus 668 ---------------------------------~~e~r~~Ive~GaV~~Lv~LL~dg-s~~Vk~~AA~ALanLa~s~~~~ 713 (2138)
+++..+.+.+.|+++.|+.+|++. ++.+++.|+++|.||+.+....
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~ 318 (457)
T 1xm9_A 239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM 318 (457)
T ss_dssp ---------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred cccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcc
Confidence 122334556678899999999764 6899999999999999743220
Q ss_pred -cch-hhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCC------HHHHHHH
Q 000124 714 -TTN-KMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGT------SEGKKNA 785 (2138)
Q Consensus 714 -d~~-r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~------~~Vr~~A 785 (2138)
... +..+.+.|++++|+++|.+++.+++.+|+++|.||+.+++.+..+. .+++++|+++|..++ +++...+
T Consensus 319 ~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~-~~~i~~Lv~lL~~~~~~~~~~~~v~~~~ 397 (457)
T 1xm9_A 319 SSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSA 397 (457)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHH
T ss_pred hHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHH-HhhhHHHHHhccCCCCCCCCcHHHHHHH
Confidence 012 3344578999999999999999999999999999999988876665 579999999998874 4688899
Q ss_pred HHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhccc
Q 000124 786 SRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQ 844 (2138)
Q Consensus 786 a~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~~~~ 844 (2138)
+++|.|+.... ......+...|++++|++++.++ .....+.+|...|.++...++
T Consensus 398 l~~l~ni~~~~---~~~~~~i~~~g~l~~L~~L~~~~-~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 398 CYTVRNLMASQ---PQLAKQYFSSSMLNNIINLCRSS-ASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHHTTC---THHHHHHCCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHHHHhcC---HHHHHHHHHcCCHHHHHHHHcCC-CcHHHHHHHHHHHHHHHcchh
Confidence 99999998764 45666677789999999999876 234568899999988875543
No 24
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.95 E-value=2e-26 Score=290.86 Aligned_cols=392 Identities=19% Similarity=0.171 Sum_probs=288.6
Q ss_pred cHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCC-----------CHhHHHHHHHHHHH
Q 000124 217 GVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNN-----------DISVRASAADALEA 285 (2138)
Q Consensus 217 GI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~s-----------d~~vr~~Aa~aL~n 285 (2138)
.++.|...+.+.+.. ...+.|..+. .+++.|..+.+.|++|.|+++|.... +...+..|+++|.|
T Consensus 33 ~~~~l~~~~~~~~~~---~~~~~ll~~~-~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~n 108 (458)
T 3nmz_A 33 MVYSLLSMLGTHDKD---DMSRTLLAMS-SSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHN 108 (458)
T ss_dssp ------------CCH---HHHHHHHHHH-SSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHH---HHHHHHHHHH-cCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHH
Confidence 356666677665544 3677788877 45566777899999999999998532 26899999999999
Q ss_pred HhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHH
Q 000124 286 LSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADII 365 (2138)
Q Consensus 286 Ls~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L 365 (2138)
+....++..+...+.+.++.|=. +. .++...+ ++++++..
T Consensus 109 i~~~~~~~~~~~~~~~~~~~l~~-~~----------------~~~~~~~---------------~~~~~~~~-------- 148 (458)
T 3nmz_A 109 IIHSQPDDKRGRREIRVLHLLEQ-IR----------------AYCETCW---------------EWQEAHEP-------- 148 (458)
T ss_dssp HHHHSCSCHHHHHHHHHHHHHHH-HH----------------HHHHHHH---------------HHHTTTSS--------
T ss_pred HHccCcchhHHHHHHHHHHHHHH-hh----------------hhhHHHH---------------HHHHhhcc--------
Confidence 99875555444443333322211 10 0000000 11111000
Q ss_pred HHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHcc--
Q 000124 366 GALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITM-- 443 (2138)
Q Consensus 366 ~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~s-- 443 (2138)
..+........ ..+..+-.|+.+|++++.+++++..+.+.|+++.|+.++..
T Consensus 149 ------------~~~~~~~~~~~--------------~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~ 202 (458)
T 3nmz_A 149 ------------GMDQDKNPMPA--------------PVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDC 202 (458)
T ss_dssp ------------SSCCCSCC--C--------------CCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred ------------ccccccCCccc--------------hhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhh
Confidence 00000000000 00113347889999999899999999999999999999952
Q ss_pred ---------CCHHHHHHHHHHHHHhhhccchhhHHhhhchh-HHHHHHHhcCCchhhHHHHHHHHHHHhhc-CchhHHHH
Q 000124 444 ---------ATADVREYLILSLTKLCRREVGIWEAIGKREG-IQLLISLLGLSSEQHQEYAVQLIAILTEQ-VDDSKWAI 512 (2138)
Q Consensus 444 ---------ss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~gg-Ip~LV~LL~s~d~~Vr~~Aa~aL~nLa~~-s~e~r~~I 512 (2138)
.+..++.+|+.+|.+++.+++.++..+...+| ||.|+++|+++++.+++.|+++|+||+.. ++++|..+
T Consensus 203 ~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I 282 (458)
T 3nmz_A 203 EMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTL 282 (458)
T ss_dssp HHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHH
T ss_pred cccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 24678999999999999987667777765555 99999999999999999999999999984 46789999
Q ss_pred HhcCCchHHHHHh-hhCCHHHHHHHHHHHHHHhcCChhHHHHHH-HcCCcchhhhccccCCh----hHHHHHHHHHHHHH
Q 000124 513 TAAGGIPPLVQLL-EAGSQKAREVAAHVLWILCCHSEDIRACVE-SAGAVPAFLWLLKSGGP----KGQDASAMALTKLI 586 (2138)
Q Consensus 513 ~~aGaIp~LV~LL-ks~d~~vre~Aa~aL~nLs~~sd~~r~~I~-e~GaI~aLv~LLkS~~~----evq~~Aa~AL~nLs 586 (2138)
.+.|++|+|+++| .++++.+++.++.+|+||+.+.++++..+. ..|+++.|+.++.++++ ++++.++++|.|++
T Consensus 283 ~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs 362 (458)
T 3nmz_A 283 REVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVS 362 (458)
T ss_dssp HHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHH
Confidence 9999999999975 556899999999999999986666666666 79999999999987665 48999999999997
Q ss_pred HhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000124 587 RAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFS 666 (2138)
Q Consensus 587 ~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s 666 (2138)
..- ...+ ..+..+.+.|+++.|+.++++++.++++.|+++|+||+.
T Consensus 363 ~~~---------------------------------a~~~-~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 363 SLI---------------------------------ATNE-DHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA 408 (458)
T ss_dssp HHH---------------------------------TTCH-HHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHS
T ss_pred hcc---------------------------------cCCH-HHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHc
Confidence 410 0011 112335678899999999999999999999999999997
Q ss_pred cChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc
Q 000124 667 MRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKT 712 (2138)
Q Consensus 667 ~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~ 712 (2138)
.+++.+..+.+.|++++|+.+|+++++.+++.|+++|.||+...+.
T Consensus 409 ~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ 454 (458)
T 3nmz_A 409 RNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 454 (458)
T ss_dssp SCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSC
T ss_pred CCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHh
Confidence 7899999999999999999999999999999999999999986554
No 25
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.1e-24 Score=279.69 Aligned_cols=488 Identities=12% Similarity=0.049 Sum_probs=341.1
Q ss_pred chhHHH-HhhhchHHHHHHHHcc-CCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHH
Q 000124 422 IFLSQW-VSHAEAKKVLIGLITM-ATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIA 499 (2138)
Q Consensus 422 ~~~~~~-L~e~~gI~~LV~LL~s-ss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~ 499 (2138)
++.... +...+..+.+.+.+.+ .+..+...+...|...|.+ ...|..| ..++++.|.+++++ ..+|..|+.+|+
T Consensus 244 p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~-~~cR~~I-~~~~~~~L~~~l~~--~~ir~lAavvL~ 319 (778)
T 3opb_A 244 TTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACID-ETMRTYI-TENYLQLLERSLNV--EDVQIYSALVLV 319 (778)
T ss_dssp HHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCS-HHHHHHH-HHHHHHHHHHHTTS--GGGHHHHHHHHH
T ss_pred HHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCC-cHHHHHH-HHhHHHHHHHHhcc--HHHHHHHHHHHH
Confidence 444444 3344556777777754 4455556666777777766 5556666 57888999999975 588999999999
Q ss_pred HHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhcccc-CChhHHHHH
Q 000124 500 ILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKS-GGPKGQDAS 578 (2138)
Q Consensus 500 nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS-~~~evq~~A 578 (2138)
+|..........+ ....+.+++.|.+++.+.+.+|+++|.+|+.+.+....+..+.+.++.|++++++ .+..+.+.+
T Consensus 320 KL~~~~~~~~~si--~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Yga 397 (778)
T 3opb_A 320 KTWSFTKLTCINL--KQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGL 397 (778)
T ss_dssp HHTGGGTCTTCCH--HHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHH
T ss_pred HHhcCCCCCcCcH--HHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHH
Confidence 9987433221111 1244556666777666669999999999999877777777777889999999995 778999999
Q ss_pred HHHHHHHHHhhch-----hhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHH
Q 000124 579 AMALTKLIRAADS-----ATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEEN 653 (2138)
Q Consensus 579 a~AL~nLs~~~e~-----~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~ev 653 (2138)
..+|.||++..+. ..+..|.++.+...++...... . +.......++.+..+.+.|+++.|+.+++++++.+
T Consensus 398 l~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~-~---~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~ 473 (778)
T 3opb_A 398 LVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGA-E---KAAKEDILLFNEKYILRTELISFLKREMHNLSPNC 473 (778)
T ss_dssp HHHHHHTTCCCCCCCCCCC------------------CCT-H---HHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHH
T ss_pred HHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccc-c---ccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHH
Confidence 9999999986431 2333333333321121111000 0 00111122335566889999999999999999999
Q ss_pred HHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHH---HHHHHHHHHHHhcCCCCcccchhh-hHHhcCChhhH
Q 000124 654 QEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQM---VATQSARALGALSRPTKTKTTNKM-SYIAEGDVKPL 729 (2138)
Q Consensus 654 re~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~---Vk~~AA~ALanLa~s~~~~d~~r~-~I~~~G~V~~L 729 (2138)
|+.|+++|.||+. ++++|..++++|++++|+.+|.++++. +|..|++||+++..+.++ .... .....|+|++|
T Consensus 474 re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np--~~~f~~~~~~~aI~pL 550 (778)
T 3opb_A 474 KQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNP--GLIFKKYSALNAIPFL 550 (778)
T ss_dssp HHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCH--HHHSSSSCSTTHHHHH
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCH--HHHcCCCccccchHHH
Confidence 9999999999987 799999999999999999999998765 899999999999863322 1110 00013899999
Q ss_pred Hhhhhc--CCH------------HHHHHHHHHHHHhhCCc-----hHHHHHHhc-CcHHHHHHHHhCCCHHHHHHHHHHH
Q 000124 730 IKLAKT--SSI------------DAAETAVAALANLLSDP-----DIAAEVLLE-DVVSALTRVLAEGTSEGKKNASRAL 789 (2138)
Q Consensus 730 v~LL~s--~s~------------~Vr~eAl~ALaNLa~~~-----e~r~~Ii~~-g~L~~LV~LL~~~~~~Vr~~Aa~AL 789 (2138)
+.||.. ... -.+.+|+.||+||+..+ +.|..|+.+ |+++.|+.+|.++++.+|++|++++
T Consensus 551 v~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI 630 (778)
T 3opb_A 551 FELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELI 630 (778)
T ss_dssp HHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred HHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999983 211 12668999999999976 468888885 9999999999999999999999999
Q ss_pred HHhhhcCCCc-hhhhhhh--hhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh-cccCCcccCCcccccccCCCchHH
Q 000124 790 HQLLKHFPVG-DVLKGNA--QCRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR-TKQGLNFTYPPWAALAEVPSSIEP 865 (2138)
Q Consensus 790 ~nL~~~~~~~-d~i~~~i--~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~-~~~~~~~i~~~~~~~~~~~~~L~~ 865 (2138)
+||+.+.... ..+.... ...+.++.||.+++. ++..++.+|..+|+++++ ....+..+. ...++++.
T Consensus 631 ~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s--~D~~~r~AAagALAnLts~~~~ia~~ll-------~~~~gi~~ 701 (778)
T 3opb_A 631 SNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQL--SDVESQRAVAAIFANIATTIPLIAKELL-------TKKELIEN 701 (778)
T ss_dssp HHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGC--SCHHHHHHHHHHHHHHHHHCHHHHHHHT-------TCHHHHHH
T ss_pred HHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcC--CCHHHHHHHHHHHHHhcCCChHHHHHHH-------HccccHHH
Confidence 9999864211 1221111 112347889999965 445679999999999975 322223222 12357889
Q ss_pred HHHhhhc--CChHHHHHHHHHHHHhhc----cCCchhhhhhhcccccHHHHHHHHhccCCceeehhhhHHHH
Q 000124 866 LVCCLAE--GPPPLQDKAIEILSRLCG----DQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALLI 931 (2138)
Q Consensus 866 Lv~ll~~--~~~~vq~~AieiL~~L~~----~~~~~~~~~~~~~~~~i~~La~~il~s~~~ev~~~~~~~~i 931 (2138)
++.++.+ +++.++++|+.++.|+.. +...-.......+.+++.+|.+.+-.++..+-.+.+...+.
T Consensus 702 Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~~~~~e~~~~~~~~~ 773 (778)
T 3opb_A 702 AIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGDSGPEFSAAIPVIL 773 (778)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSSSSCSSTTSHHHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 9999998 889999999999999986 22212223335578889999987777777777776666553
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.92 E-value=6e-24 Score=260.85 Aligned_cols=275 Identities=20% Similarity=0.190 Sum_probs=236.3
Q ss_pred CchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhh-----------CCHHHHHHHHHHHHHHhcCChhHHHHH
Q 000124 486 SSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA-----------GSQKAREVAAHVLWILCCHSEDIRACV 554 (2138)
Q Consensus 486 ~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks-----------~d~~vre~Aa~aL~nLs~~sd~~r~~I 554 (2138)
++...+..|+++|.|++. ++++|..+.+.|++++|+.+|.. .++.+++.|+++|.||+.+++..+..+
T Consensus 44 ~~~~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i 122 (354)
T 3nmw_A 44 PVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL 122 (354)
T ss_dssp GGGGTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344567789999999998 58999999999999999999953 247899999999999999887788877
Q ss_pred HH-cCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhh
Q 000124 555 ES-AGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGS 633 (2138)
Q Consensus 555 ~e-~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l 633 (2138)
.. .|+||.|+++++++++++++.++++|.||+..++ + ..+..+
T Consensus 123 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~---------------~---------------------~~k~~i 166 (354)
T 3nmw_A 123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD---------------V---------------------NSKKTL 166 (354)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCC---------------H---------------------HHHHHH
T ss_pred HHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCC---------------H---------------------HHHHHH
Confidence 54 5569999999999999999999999999974211 0 112234
Q ss_pred cccchhhHHHHh-hcCCCHHHHHHHHHHHHHHhhcChhhhhhhh-hCCCHHHHHHHhccCCH----HHHHHHHHHHHHhc
Q 000124 634 AANKGLRSLVQV-LNSSNEENQEYAASVLADLFSMRQDICGSLA-TDEIVNPCMRLLTSNTQ----MVATQSARALGALS 707 (2138)
Q Consensus 634 ~~~GaI~aLV~L-Lks~s~evre~Aa~ALanL~s~~~e~r~~Iv-e~GaV~~Lv~LL~dgs~----~Vk~~AA~ALanLa 707 (2138)
.+.|+++.|+++ ++++++++++.|+.+|+||+..+++++..+. ..|+++.|+++|+++++ .+++.|+++|.||+
T Consensus 167 ~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs 246 (354)
T 3nmw_A 167 REVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVS 246 (354)
T ss_dssp HHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHH
Confidence 578899999997 5667899999999999999986677788887 78999999999998765 58999999999998
Q ss_pred CCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-CchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHH
Q 000124 708 RPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNAS 786 (2138)
Q Consensus 708 ~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~-~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa 786 (2138)
......+.++..+.+.|++++|+.+|.+++.+++++|+++|.||+. +++.+..+.+.|++|+|++++.++++++|+.|+
T Consensus 247 ~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~ 326 (354)
T 3nmw_A 247 SLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSA 326 (354)
T ss_dssp HHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHH
T ss_pred hhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHH
Confidence 5100123688889999999999999999999999999999999995 788999999999999999999999999999999
Q ss_pred HHHHHhhhcCC
Q 000124 787 RALHQLLKHFP 797 (2138)
Q Consensus 787 ~AL~nL~~~~~ 797 (2138)
++|.||+.+.+
T Consensus 327 ~aL~nL~~~~~ 337 (354)
T 3nmw_A 327 AALRNLMANRP 337 (354)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHcCCH
Confidence 99999999765
No 27
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.91 E-value=2.4e-23 Score=255.56 Aligned_cols=272 Identities=19% Similarity=0.155 Sum_probs=235.2
Q ss_pred HHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHcc-----------CCHHHHHHHHHHHHHhhhccchhhHHhhhchh
Q 000124 407 VQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITM-----------ATADVREYLILSLTKLCRREVGIWEAIGKREG 475 (2138)
Q Consensus 407 vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~s-----------ss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~gg 475 (2138)
.+..++.+|++++.++++++.+.+.|+++.|+.++.. .++.+|.+|+.+|.+++.++..++..+...+|
T Consensus 48 ~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~G 127 (354)
T 3nmw_A 48 QICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 127 (354)
T ss_dssp THHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCC
Confidence 4567899999999999999999999999999999952 24678999999999999987778877765555
Q ss_pred -HHHHHHHhcCCchhhHHHHHHHHHHHhhc-CchhHHHHHhcCCchHHHHHh-hhCCHHHHHHHHHHHHHHhcCChhHHH
Q 000124 476 -IQLLISLLGLSSEQHQEYAVQLIAILTEQ-VDDSKWAITAAGGIPPLVQLL-EAGSQKAREVAAHVLWILCCHSEDIRA 552 (2138)
Q Consensus 476 -Ip~LV~LL~s~d~~Vr~~Aa~aL~nLa~~-s~e~r~~I~~aGaIp~LV~LL-ks~d~~vre~Aa~aL~nLs~~sd~~r~ 552 (2138)
||.|+++|+++++.+++.|+++|+||+.. ++++|..+.+.|++|+|+++| +++++.+++.++.+|+||+.+.++++.
T Consensus 128 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~ 207 (354)
T 3nmw_A 128 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA 207 (354)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhH
Confidence 99999999999999999999999999984 467899999999999999975 567899999999999999987767776
Q ss_pred HHH-HcCCcchhhhccccCCh----hHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchH
Q 000124 553 CVE-SAGAVPAFLWLLKSGGP----KGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQED 627 (2138)
Q Consensus 553 ~I~-e~GaI~aLv~LLkS~~~----evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d 627 (2138)
.+. ..|+++.|+++++++++ ++++.++++|.|++... ...+
T Consensus 208 ~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~---------------------------------a~~~- 253 (354)
T 3nmw_A 208 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI---------------------------------ATNE- 253 (354)
T ss_dssp HHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHH---------------------------------TTCH-
T ss_pred HHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhc---------------------------------cCCH-
Confidence 666 79999999999987765 48999999999997410 0011
Q ss_pred HHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 000124 628 LVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALS 707 (2138)
Q Consensus 628 ~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa 707 (2138)
..+..+.+.|+++.|+.++++++.++++.|+++|.||+..+++.+..+.+.|++++|+.+|+++++.+++.|+++|.||+
T Consensus 254 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~ 333 (354)
T 3nmw_A 254 DHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 333 (354)
T ss_dssp HHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 12334567899999999999999999999999999999778999999999999999999999999999999999999999
Q ss_pred CCCCc
Q 000124 708 RPTKT 712 (2138)
Q Consensus 708 ~s~~~ 712 (2138)
...+.
T Consensus 334 ~~~~~ 338 (354)
T 3nmw_A 334 ANRPA 338 (354)
T ss_dssp TTCCG
T ss_pred cCCHH
Confidence 85443
No 28
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.88 E-value=2.6e-19 Score=233.82 Aligned_cols=544 Identities=14% Similarity=0.124 Sum_probs=356.3
Q ss_pred HHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhc--------cCCHHHHHHHHHHHHHHH
Q 000124 173 VPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLS--------SDNAAAQSNAASLLARLM 244 (2138)
Q Consensus 173 Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~--------s~s~evq~~A~~aL~nLs 244 (2138)
+..|++-+.... .++.++..++-++..+-...... +-+.+..++. ....+.-..+..+|..+.
T Consensus 170 ~~~l~~~~~~~~-~~~~~~~~~l~i~~~~~~~~~~~--------~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lf 240 (778)
T 3opb_A 170 VRFLVKELILRI-SEDEVKSMMLIIFAELQSSFQKD--------FDKAVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELY 240 (778)
T ss_dssp TTHHHHHHHTTT-TCHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHT
T ss_pred hhhHHHHhcccc-ChhhhHHHHHHHHHHHHHhCchH--------HHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHh
Confidence 556666555433 33456766666666554322211 1122222222 112233455666666665
Q ss_pred hhcCCCcch-hhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhh
Q 000124 245 LAFGDSIPT-VIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRG 323 (2138)
Q Consensus 245 ~~~~e~r~~-l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~ 323 (2138)
-..++.+.. +...|+.+.+...+.+.++..+.......+...+. +...|..+ ..++++.|.+.+.+.
T Consensus 241 Pi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi-~~~cR~~I-~~~~~~~L~~~l~~~---------- 308 (778)
T 3opb_A 241 PSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACI-DETMRTYI-TENYLQLLERSLNVE---------- 308 (778)
T ss_dssp TTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCC-SHHHHHHH-HHHHHHHHHHHTTSG----------
T ss_pred cCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhC-CcHHHHHH-HHhHHHHHHHHhccH----------
Confidence 434444343 45778899998888655565555555555544455 57777777 567778888887542
Q ss_pred hhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCC
Q 000124 324 QALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHD 403 (2138)
Q Consensus 324 ~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~ 403 (2138)
.++..|..+|+++...-. .. ........+.++..+...+
T Consensus 309 -~ir~lAavvL~KL~~~~~--------------------------------------~~--~~si~~La~~~~~~L~~~~ 347 (778)
T 3opb_A 309 -DVQIYSALVLVKTWSFTK--------------------------------------LT--CINLKQLSEIFINAISRRI 347 (778)
T ss_dssp -GGHHHHHHHHHHHTGGGT--------------------------------------CT--TCCHHHHHHHHHHHTTTCC
T ss_pred -HHHHHHHHHHHHHhcCCC--------------------------------------CC--cCcHHHHHHHHHHHHhcCC
Confidence 166778887777642100 00 0111224466677777665
Q ss_pred hhHHHHHHHHHHHHhhcCchhHHHHhhhch-HHHHHHHHcc-CCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHH
Q 000124 404 NKLVQERVLEAMASLYGNIFLSQWVSHAEA-KKVLIGLITM-ATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLIS 481 (2138)
Q Consensus 404 ~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~g-I~~LV~LL~s-ss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~ 481 (2138)
.+ -+.+++..|+.+.-+++++..+.+..+ ++.|+.++.. .+..+...++..|.|++...+... .+...+..|..
T Consensus 348 ~~-~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~---~e~~~l~~Lk~ 423 (778)
T 3opb_A 348 VP-KVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXX---XXXXXXXXXXX 423 (778)
T ss_dssp HH-HHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCC---CCCC-------
T ss_pred cc-HHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccc---hhhhhhhhhhh
Confidence 44 489999999999999999999887755 9999999985 778889999999999998744311 11235566666
Q ss_pred HhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcc
Q 000124 482 LLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVP 561 (2138)
Q Consensus 482 LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~ 561 (2138)
+.+.+.+........ +-+=......++..+.+.|++|.|+.+++++++.+|+.++++|.+|+. +...|..+.+.|+++
T Consensus 424 ~A~~~~p~~~~~d~~-~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~ 501 (778)
T 3opb_A 424 XXXXXXPAADKVGAE-KAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVK 501 (778)
T ss_dssp -----------CCTH-HHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHH
T ss_pred hccccCcccCccccc-ccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHH
Confidence 665433322221110 100000011256778899999999999999999999999999999987 477888899999999
Q ss_pred hhhhccccCChh---HHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccch
Q 000124 562 AFLWLLKSGGPK---GQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKG 638 (2138)
Q Consensus 562 aLv~LLkS~~~e---vq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~Ga 638 (2138)
.|+.++.+++.. ++..|+.+|.++..+.+. .+ + . + .....|+
T Consensus 502 ~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np---------------~~---~---------f-~-------~~~~~~a 546 (778)
T 3opb_A 502 IILEYLANKQDIGEPIRILGCRALTRMLIFTNP---------------GL---I---------F-K-------KYSALNA 546 (778)
T ss_dssp HHHHHTTCC---CCHHHHHHHHHHHHHHHTSCH---------------HH---H---------S-S-------SSCSTTH
T ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCH---------------HH---H---------c-C-------CCccccc
Confidence 999999987654 889999999999754321 00 0 0 0 0011267
Q ss_pred hhHHHHhhcC--CCH------------HHHHHHHHHHHHHhhcC----hhhhhhhhhC-CCHHHHHHHhccCCHHHHHHH
Q 000124 639 LRSLVQVLNS--SNE------------ENQEYAASVLADLFSMR----QDICGSLATD-EIVNPCMRLLTSNTQMVATQS 699 (2138)
Q Consensus 639 I~aLV~LLks--~s~------------evre~Aa~ALanL~s~~----~e~r~~Ive~-GaV~~Lv~LL~dgs~~Vk~~A 699 (2138)
+++|+.++.. +.. -.+..|+.+|.||+..+ .+.+..+++. |+++.|..++.++++.+|+.|
T Consensus 547 I~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA 626 (778)
T 3opb_A 547 IPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRST 626 (778)
T ss_dssp HHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHH
T ss_pred hHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHH
Confidence 8889988872 111 23778999999999854 2567888886 999999999999999999999
Q ss_pred HHHHHHhcCCCCcccchh-hhHHhcC------ChhhHHhhhhcCCHHHHHHHHHHHHHhh-CCchHHHHHHhc-CcHHHH
Q 000124 700 ARALGALSRPTKTKTTNK-MSYIAEG------DVKPLIKLAKTSSIDAAETAVAALANLL-SDPDIAAEVLLE-DVVSAL 770 (2138)
Q Consensus 700 A~ALanLa~s~~~~d~~r-~~I~~~G------~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa-~~~e~r~~Ii~~-g~L~~L 770 (2138)
+++++||+.+ + ..+ ..+...+ .+++|+.++++++.++|.+|+++|+|++ .++..+..+.+. ++++.+
T Consensus 627 ~elI~NL~~~-~---e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~L 702 (778)
T 3opb_A 627 LELISNMMSH-P---LTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENA 702 (778)
T ss_dssp HHHHHHHHTS-G---GGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhCC-c---HHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHH
Confidence 9999999962 2 222 1222222 3778999999999999999999999996 588888888776 799999
Q ss_pred HHHHhC--CCHHHHHHHHHHHHHhhhcCCC--c-hhhhhhhhhhhhHHHHHHhhccCC
Q 000124 771 TRVLAE--GTSEGKKNASRALHQLLKHFPV--G-DVLKGNAQCRFVVLTLVDSLNAMD 823 (2138)
Q Consensus 771 V~LL~~--~~~~Vr~~Aa~AL~nL~~~~~~--~-d~i~~~i~~~gav~~LV~LL~s~~ 823 (2138)
+.++.+ ++++++..++.++.||....+. . +.+..-.........|..+++..+
T Consensus 703 l~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~~ 760 (778)
T 3opb_A 703 IQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGD 760 (778)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSSS
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCCC
Confidence 999999 8999999999999999973321 1 122222213445566666666543
No 29
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.87 E-value=4.2e-19 Score=240.90 Aligned_cols=704 Identities=13% Similarity=0.112 Sum_probs=442.3
Q ss_pred hhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHh---cCCHHHHHHHHHHHHHhc
Q 000124 36 STMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILR---SGTPLAKVNVAATLSVLC 112 (2138)
Q Consensus 36 ~~~~~V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLk---s~~~evr~~Aa~~L~~Ls 112 (2138)
..+..+.++++... +.+...|..|-..|..+...+ |....|..++. +.++.+|..|+-.|++..
T Consensus 10 ~~~~~l~~~l~~~~--s~d~~~r~~Ae~~L~~~~~~p-----------~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i 76 (852)
T 4fdd_A 10 QGLQQILQLLKESQ--SPDTTIQRTVQQKLEQLNQYP-----------DFNNYLIFVLTKLKSEDEPTRSLSGLILKNNV 76 (852)
T ss_dssp HHHHHHHHHHHHHT--CSCHHHHHHHHHHHHHHTTSH-----------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHh--CcCHHHHHHHHHHHHHHHhCC-----------CHHHHHHHHHhccCCCChHHHHHHHHHHHHHH
Confidence 34455666665543 457788899998887653322 34445555554 467899999999998765
Q ss_pred cC------chhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCC
Q 000124 113 KD------EDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQ 186 (2138)
Q Consensus 113 ~~------e~~r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~e 186 (2138)
.. ++.+..+. +.+++.|.++++.+|..++.++..++..... . .-.+.++.|++.+.+++
T Consensus 77 ~~~w~~~~~~~~~~ik-----~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~-~-------~wp~ll~~L~~~l~~~~-- 141 (852)
T 4fdd_A 77 KAHFQNFPNGVTDFIK-----SECLNNIGDSSPLIRATVGILITTIASKGEL-Q-------NWPDLLPKLCSLLDSED-- 141 (852)
T ss_dssp TTSGGGCCHHHHHHHH-----HHHHTTTTCSSHHHHHHHHHHHHHHHHHTTT-T-------TCTTHHHHHHHHHSCSS--
T ss_pred HHccCCCCHHHHHHHH-----HHHHHHHcCCCHHHHHHHHHHHHHHHHhcCc-c-------ccHHHHHHHHHHHcCCC--
Confidence 32 33344333 6677778888899999999999999863210 0 01358999999997654
Q ss_pred ChhHHHHHHHHHHHHhcCCCchhHHHH----HhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhh--ccchH
Q 000124 187 DNVVQGFVTGALRNLCGDKDGYWRATL----EAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVI--DSGAV 260 (2138)
Q Consensus 187 d~~V~e~Al~aL~nLcs~~e~r~~aI~----e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~--~~GaL 260 (2138)
..+++.++.+|..+|.........-. -...++.++..+.++++.+|..++.+|..+....+ ..+. -...+
T Consensus 142 -~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~---~~~~~~~~~~l 217 (852)
T 4fdd_A 142 -YNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRT---QALMLHIDSFI 217 (852)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTC---HHHHTSHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccc---HHHHHHHHHHH
Confidence 56889999999999875432211000 01246777888888899999999999987663222 1111 12467
Q ss_pred HHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcC
Q 000124 261 KALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGG 340 (2138)
Q Consensus 261 ~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGg 340 (2138)
+.+...+. +.+..+|..+..+|..+....++.-.... .+.++.++..+.+++
T Consensus 218 ~~l~~~~~-d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~~-------------------------- 269 (852)
T 4fdd_A 218 ENLFALAG-DEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQD-------------------------- 269 (852)
T ss_dssp HHHHHHHT-CCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCSS--------------------------
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCCc--------------------------
Confidence 77777766 46678888888888887764322111000 012222333222221
Q ss_pred chhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhc
Q 000124 341 MPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYG 420 (2138)
Q Consensus 341 is~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~ 420 (2138)
+ .++..++..+..++.
T Consensus 270 ---------------------------------------------------------------~-~vr~~a~e~l~~l~~ 285 (852)
T 4fdd_A 270 ---------------------------------------------------------------E-NVALEACEFWLTLAE 285 (852)
T ss_dssp ---------------------------------------------------------------H-HHHHHHHHHHHHHTT
T ss_pred ---------------------------------------------------------------H-HHHHHHHHHHHHHhc
Confidence 1 133333333333332
Q ss_pred CchhHHHHhhh--chHHHHHHHH-----------cc-----------CCHHHHHHHHHHHHHhhhccchhhHHhhhchhH
Q 000124 421 NIFLSQWVSHA--EAKKVLIGLI-----------TM-----------ATADVREYLILSLTKLCRREVGIWEAIGKREGI 476 (2138)
Q Consensus 421 n~~~~~~L~e~--~gI~~LV~LL-----------~s-----------ss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggI 476 (2138)
....++.+... ..++.++..+ .. .+..++..++.+|..++...++ .+ -...+
T Consensus 286 ~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~-~~~l~ 361 (852)
T 4fdd_A 286 QPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---EL-LPHIL 361 (852)
T ss_dssp STTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GG-HHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HH-HHHHH
Confidence 22111111000 1122222222 11 1234578888999888865332 11 13467
Q ss_pred HHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChh--HHHHH
Q 000124 477 QLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSED--IRACV 554 (2138)
Q Consensus 477 p~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~--~r~~I 554 (2138)
+.+.+++++.+..+|+.|+.+|++++....+. ....-.+.++.++.++++.++.+|..+++++++++..... ....
T Consensus 362 ~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~-~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~- 439 (852)
T 4fdd_A 362 PLLKELLFHHEWVVKESGILVLGAIAEGCMQG-MIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY- 439 (852)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHH-HGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTT-
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcchHH-HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHH-
Confidence 88888889999999999999999999754332 1122346788899999999999999999999998752110 0000
Q ss_pred HHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc-------hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcc--
Q 000124 555 ESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-------SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQ-- 625 (2138)
Q Consensus 555 ~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e-------~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~-- 625 (2138)
-.+.++.|+..+++.++.++..|+++|.+++.... ...++.|+.+++..+......+.++++.++.....
T Consensus 440 -~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~ 518 (852)
T 4fdd_A 440 -LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHL 518 (852)
T ss_dssp -HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGG
T ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhh
Confidence 12456778888888899999999999999986532 34567778888766655555677888877643221
Q ss_pred --hHHHHhhhcccchhhHHHH---hhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhcc----------
Q 000124 626 --EDLVQKGSAANKGLRSLVQ---VLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS---------- 690 (2138)
Q Consensus 626 --~d~v~~~l~~~GaI~aLV~---LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~d---------- 690 (2138)
++.+. ..++.+++ .+++.+++.+ .+..++..++..-....... -..+++.++.+++.
T Consensus 519 ~~~~~~~------~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~-~~~i~~~~~~~l~~~l~~~~~~~~ 590 (852)
T 4fdd_A 519 NKPEYIQ------MLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPY-CEPVYQRCVNLVQKTLAQAMLNNA 590 (852)
T ss_dssp CCHHHHH------HHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHH------HHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 12222 23555553 3445555554 67777777765311111110 11233334444321
Q ss_pred -------CCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-Cc-hHHHHH
Q 000124 691 -------NTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-DP-DIAAEV 761 (2138)
Q Consensus 691 -------gs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~-~~-e~r~~I 761 (2138)
.+...+..+..+++.++..... ..+..+...+.++.++.++.+.+.++++.+..+++.++. .+ .....+
T Consensus 591 ~~~~~~~~d~~~~~~~l~~l~~l~~~l~~--~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l 668 (852)
T 4fdd_A 591 QPDQYEAPDKDFMIVALDLLSGLAEGLGG--NIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCI 668 (852)
T ss_dssp CTTTSCCCCTHHHHHHHHHHHHHHHHHGG--GGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGH
T ss_pred CCcccCCCcchHHHHHHHHHHHHHHHHhH--hHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 2456888889999998863322 333334456888999999999899999999999999974 22 222222
Q ss_pred HhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000124 762 LLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2138)
Q Consensus 762 i~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~ 841 (2138)
...+|.+.+.+..+++.+|..|+|+++.++... ++.+... ....++.|+.++++.+.+...+..|..++|.|+.
T Consensus 669 --~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~--~~~~~p~--~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~ 742 (852)
T 4fdd_A 669 --ADFMPILGTNLNPEFISVCNNATWAIGEISIQM--GIEMQPY--IPMVLHQLVEIINRPNTPKTLLENTAITIGRLGY 742 (852)
T ss_dssp --HHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHH--GGGGGGG--THHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHcCccchHHHHHHHHHHHHHHHHh--hHhHHHH--HHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHH
Confidence 236788888887788999999999999998753 1222221 2568899999998766666788899999999986
Q ss_pred cccCCcccCCcccccccCCCchHHHHHhhhc-CChHHHHHHHHHHHHhhccCCc
Q 000124 842 TKQGLNFTYPPWAALAEVPSSIEPLVCCLAE-GPPPLQDKAIEILSRLCGDQPA 894 (2138)
Q Consensus 842 ~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~-~~~~vq~~AieiL~~L~~~~~~ 894 (2138)
.... ...|. .+.-++++...+.. ++...+..|...|+.++..+|.
T Consensus 743 ~~~~--~~~~~------l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~ 788 (852)
T 4fdd_A 743 VCPQ--EVAPM------LQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPS 788 (852)
T ss_dssp HCHH--HHGGG------HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGG
T ss_pred hCHH--HhCcc------HHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChH
Confidence 4111 11100 12235555566654 5556799999999999998875
No 30
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.85 E-value=3.3e-20 Score=212.76 Aligned_cols=241 Identities=26% Similarity=0.321 Sum_probs=217.7
Q ss_pred hhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHH
Q 000124 474 EGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRAC 553 (2138)
Q Consensus 474 ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~ 553 (2138)
++++.|+++++++++.+|..|+++|++++...++++..+.+.|+++.|+++|+++++.++..++++|++++.+++..+..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 67899999999999999999999999999877778999999999999999999999999999999999999987889999
Q ss_pred HHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhh
Q 000124 554 VESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGS 633 (2138)
Q Consensus 554 I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l 633 (2138)
+.+.|+++.|+.+++++++.++..++++|.+++...+ + .+..+
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~----------------~---------------------~~~~~ 124 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD----------------E---------------------AIKAI 124 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCH----------------H---------------------HHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH----------------H---------------------HHHHH
Confidence 9999999999999999999999999999999973211 1 11223
Q ss_pred cccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcc
Q 000124 634 AANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTK 713 (2138)
Q Consensus 634 ~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~ 713 (2138)
.+.|+++.|+.++++++++++..++++|.+|+..+++.+..+.+.|+++.|+.+++++++.++..|+++|.+++...
T Consensus 125 ~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--- 201 (252)
T 4hxt_A 125 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP--- 201 (252)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB---
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC---
Confidence 45688999999999999999999999999999978888889999999999999999999999999999999998632
Q ss_pred cchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCC
Q 000124 714 TTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSD 754 (2138)
Q Consensus 714 d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~ 754 (2138)
+..+..+.+.|+++.|++++++++++++..|+++|+||..+
T Consensus 202 ~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 202 TSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG 242 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcC
Confidence 25677888999999999999999999999999999999864
No 31
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.85 E-value=6.5e-20 Score=210.33 Aligned_cols=241 Identities=24% Similarity=0.302 Sum_probs=220.5
Q ss_pred chHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHH
Q 000124 432 EAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWA 511 (2138)
Q Consensus 432 ~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~ 511 (2138)
++++.|+.++.+++++++..++.+|.+++..+++.+..+.+.|+++.|+++++++++.++..++++|++++..+++.+..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 56888999999999999999999999999987778889999999999999999999999999999999999977889999
Q ss_pred HHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhch
Q 000124 512 ITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADS 591 (2138)
Q Consensus 512 I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~ 591 (2138)
+.+.|+++.|+.+|+++++.++..++++|++|+.+++..+..+.+.|+++.|+.+++++++.++..++++|+|++...+
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~- 160 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD- 160 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH-
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH-
Confidence 9999999999999999999999999999999997788888889999999999999999999999999999999974311
Q ss_pred hhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhh
Q 000124 592 ATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDI 671 (2138)
Q Consensus 592 ~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~ 671 (2138)
.....+.+.|+++.|+.++++++++++..|+++|.+++..+++.
T Consensus 161 ------------------------------------~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 204 (252)
T 4hxt_A 161 ------------------------------------EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSA 204 (252)
T ss_dssp ------------------------------------HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHH
T ss_pred ------------------------------------HHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 01112345788999999999999999999999999999888999
Q ss_pred hhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCC
Q 000124 672 CGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRP 709 (2138)
Q Consensus 672 r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s 709 (2138)
+..+.+.|+++.|+++++++++.++..|+++|.|+...
T Consensus 205 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 205 IKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG 242 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999873
No 32
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.84 E-value=6.6e-18 Score=217.28 Aligned_cols=568 Identities=14% Similarity=0.083 Sum_probs=396.2
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCC
Q 000124 127 IPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKD 206 (2138)
Q Consensus 127 Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e 206 (2138)
+..++..|.++++++|..|++.|..++..- .+ .. .....+|.|...+ + .+..++..+..+|..++..-.
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~---~~---~~-~~~~l~~~L~~~~-d---~~~~vr~~~~~~L~~~~~~~~ 80 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALAL---GV---ER-TRSELLPFLTDTI-Y---DEDEVLLALAEQLGTFTTLVG 80 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHS---CH---HH-HHHTHHHHHHHTC-C---CCHHHHHHHHHHHTTCSGGGT
T ss_pred HHHHHHHhhcccHHHHHHHHHhHHHHHHHh---CH---HH-HHHHHHHHHHHhc-C---CcHHHHHHHHHHHHHHHhccC
Confidence 678888899999999999999999887521 11 11 1234678887765 2 235688889999988775321
Q ss_pred chhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHH
Q 000124 207 GYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEAL 286 (2138)
Q Consensus 207 ~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nL 286 (2138)
+. . ....-++.|..++.++++.+|..++.+|.+++...+. .......++.+..+.. +.+...|..+..++..+
T Consensus 81 ~~-~--~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~---~~~~~~l~~~l~~l~~-~~~~~~R~~a~~~l~~~ 153 (588)
T 1b3u_A 81 GP-E--YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSP---SDLEAHFVPLVKRLAG-GDWFTSRTSACGLFSVC 153 (588)
T ss_dssp SG-G--GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCH---HHHHHTHHHHHHHHHT-CSSHHHHHHHGGGHHHH
T ss_pred cH-H--HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHH
Confidence 11 0 1122467777777788899999999999999843321 1122234555555554 45678888888888887
Q ss_pred hhcCH-HHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHH
Q 000124 287 SSKSI-KAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADII 365 (2138)
Q Consensus 287 s~~s~-e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L 365 (2138)
..... ..++ ..++.+..++.+++.. ++..|..+|.++......
T Consensus 154 ~~~~~~~~~~-----~l~~~l~~l~~d~~~~---------VR~~a~~~l~~l~~~~~~---------------------- 197 (588)
T 1b3u_A 154 YPRVSSAVKA-----ELRQYFRNLCSDDTPM---------VRRAAASKLGEFAKVLEL---------------------- 197 (588)
T ss_dssp TTTSCHHHHH-----HHHHHHHHHHTCSCHH---------HHHHHHHHHHHHHHTSCH----------------------
T ss_pred HHhcCHHHHH-----HHHHHHHHHhCCCCHH---------HHHHHHHHHHHHHHHhcH----------------------
Confidence 66422 2222 2346666776666543 566677776665421110
Q ss_pred HHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCC
Q 000124 366 GALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMAT 445 (2138)
Q Consensus 366 ~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss 445 (2138)
..+ ...+.+.+..++.+.+. .+|..++.+|+.++.... ........++.+..++...+
T Consensus 198 ------------------~~~-~~~l~~~l~~~~~d~~~-~vr~~a~~~l~~l~~~~~--~~~~~~~~~~~l~~~~~d~~ 255 (588)
T 1b3u_A 198 ------------------DNV-KSEIIPMFSNLASDEQD-SVRLLAVEACVNIAQLLP--QEDLEALVMPTLRQAAEDKS 255 (588)
T ss_dssp ------------------HHH-HHTHHHHHHHHHTCSCH-HHHTTHHHHHHHHHHHSC--HHHHHHHTHHHHHHHHTCSS
T ss_pred ------------------HhH-HHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHccCCC
Confidence 000 12345777777777654 489999999988854321 11122345677788888888
Q ss_pred HHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCch-hHHHHHhcCCchHHHHH
Q 000124 446 ADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDD-SKWAITAAGGIPPLVQL 524 (2138)
Q Consensus 446 ~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e-~r~~I~~aGaIp~LV~L 524 (2138)
..+|..++.+|..++..... .......++.+++++++.++.+|..++.+|..++..... .+........+|.+..+
T Consensus 256 ~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~ 332 (588)
T 1b3u_A 256 WRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKEL 332 (588)
T ss_dssp HHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHH
Confidence 99999999999998864211 112345688999999999999999999999999874332 12112234567888889
Q ss_pred hhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc-----hhhHHHHHH
Q 000124 525 LEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-----SATINQLLA 599 (2138)
Q Consensus 525 Lks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e-----~~aI~~Li~ 599 (2138)
+++.++.+|..++++|..++..-. ... .....++.+..++++.+++++..+..+|..+..... ...+|.+.+
T Consensus 333 l~d~~~~vR~~a~~~l~~l~~~~~--~~~-~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~ 409 (588)
T 1b3u_A 333 VSDANQHVKSALASVIMGLSPILG--KDN-TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVE 409 (588)
T ss_dssp HTCSCHHHHHHHHTTGGGGHHHHC--HHH-HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHhh--HhH-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 999999999999999998864211 111 123467788888999999999999999998876421 357788999
Q ss_pred HhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCC
Q 000124 600 LLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDE 679 (2138)
Q Consensus 600 LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~G 679 (2138)
++.+.+..++..+.++++.++...... ......++.+..++++++..+|+.|+.++..++..... ......
T Consensus 410 ~~~d~~~~vr~~~~~~l~~l~~~~~~~------~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~ 480 (588)
T 1b3u_A 410 LAEDAKWRVRLAIIEYMPLLAGQLGVE------FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK---EWAHAT 480 (588)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHHCGG------GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHH
T ss_pred HhcCCCchHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc---hhHHHH
Confidence 999988899999999999886543221 11223578888899999999999999999999763211 112346
Q ss_pred CHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHH
Q 000124 680 IVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAA 759 (2138)
Q Consensus 680 aV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~ 759 (2138)
+++.|..++++.+..+|..++.+++.++... ........+++.|+.++++++++||..++.+|+.+...-. .
T Consensus 481 llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~------~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~--~ 552 (588)
T 1b3u_A 481 IIPKVLAMSGDPNYLHRMTTLFCINVLSEVC------GQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILD--N 552 (588)
T ss_dssp THHHHHHTTTCSCHHHHHHHHHHHHHHHHHH------HHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSC--H
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHHHhc------CHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhc--h
Confidence 7788888888899999999999999997521 1122334688999999999999999999999999975211 1
Q ss_pred HHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhh
Q 000124 760 EVLLEDVVSALTRVLAEGTSEGKKNASRALHQLL 793 (2138)
Q Consensus 760 ~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~ 793 (2138)
....+..+|.|..++.+.++++|..|.+++..+.
T Consensus 553 ~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 553 STLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 1223456777888888889999999999998764
No 33
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.83 E-value=8.4e-20 Score=210.89 Aligned_cols=240 Identities=21% Similarity=0.234 Sum_probs=214.5
Q ss_pred hhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHH
Q 000124 474 EGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRAC 553 (2138)
Q Consensus 474 ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~ 553 (2138)
...+.++.+++++++.+|..|+++|+++...+.+++..+.+.|+++.|+++|+++++.++..++++|++++.+++..+..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 45789999999999999999999998876656778888999999999999999999999999999999999988889999
Q ss_pred HHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhh
Q 000124 554 VESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGS 633 (2138)
Q Consensus 554 I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l 633 (2138)
+.+.|+++.|+.+++++++.++..++++|+|++...+ .....+
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-------------------------------------~~~~~~ 134 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-------------------------------------EQIQAV 134 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH-------------------------------------HHHHHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc-------------------------------------hHHHHH
Confidence 9999999999999999999999999999999974311 011223
Q ss_pred cccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcc
Q 000124 634 AANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTK 713 (2138)
Q Consensus 634 ~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~ 713 (2138)
.+.|+++.|+.+++++++++++.|+++|.+|+..+++.+..+.+.|+++.|+++++++++.++..|+++|++++...
T Consensus 135 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--- 211 (252)
T 4db8_A 135 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG--- 211 (252)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC---
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC---
Confidence 46789999999999999999999999999999988888889999999999999999999999999999999998632
Q ss_pred cchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC
Q 000124 714 TTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS 753 (2138)
Q Consensus 714 d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~ 753 (2138)
+..+..+.+.|+++.|+.++.+++++++..|+++|+||+.
T Consensus 212 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 212 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 2567788899999999999999999999999999999974
No 34
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.83 E-value=1.3e-17 Score=214.55 Aligned_cols=569 Identities=15% Similarity=0.091 Sum_probs=396.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHH
Q 000124 86 MPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMK 165 (2138)
Q Consensus 86 Vp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre 165 (2138)
+..|+..|+++++++|..|+..|..++....... .....++.|...+ +++.++|..++..|..+...-. ..
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~--~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~--~~---- 82 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVER--TRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVG--GP---- 82 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHH--HHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGT--SG----
T ss_pred HHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHH--HHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccC--cH----
Confidence 7788889999999999999999987753211100 1123456666655 5688999999999988774210 01
Q ss_pred HHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHh
Q 000124 166 IFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLML 245 (2138)
Q Consensus 166 ~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~ 245 (2138)
. .....++.|..++.++ +..++..|..+|.+++...... ......++.+..+..+++..+|..++.++..++.
T Consensus 83 ~-~~~~ll~~L~~l~~~~---~~~vR~~a~~~L~~l~~~~~~~---~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~ 155 (588)
T 1b3u_A 83 E-YVHCLLPPLESLATVE---ETVVRDKAVESLRAISHEHSPS---DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYP 155 (588)
T ss_dssp G-GGGGGHHHHHHHTTSS---CHHHHHHHHHHHHHHHTTSCHH---HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTT
T ss_pred H-HHHHHHHHHHHHHhCc---hHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 0 1234677777766543 4679999999999999865432 1122346667677777788899999999998873
Q ss_pred hcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhh
Q 000124 246 AFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQA 325 (2138)
Q Consensus 246 ~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~a 325 (2138)
..+ .......++.+..++. +.+..+|..+..++..+...... .......++.+..++.+++..
T Consensus 156 ~~~----~~~~~~l~~~l~~l~~-d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~--------- 218 (588)
T 1b3u_A 156 RVS----SAVKAELRQYFRNLCS-DDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASDEQDS--------- 218 (588)
T ss_dssp TSC----HHHHHHHHHHHHHHHT-CSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTCSCHH---------
T ss_pred hcC----HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHhcH---HhHHHHHHHHHHHHhcCCcHH---------
Confidence 221 1123346666667666 57789999999999998764221 112245567777777665533
Q ss_pred hHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChh
Q 000124 326 LQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNK 405 (2138)
Q Consensus 326 lqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e 405 (2138)
++..|..+|..++...++ + .....+.+.+..++.+.+.
T Consensus 219 vr~~a~~~l~~l~~~~~~----------------------------------------~-~~~~~~~~~l~~~~~d~~~- 256 (588)
T 1b3u_A 219 VRLLAVEACVNIAQLLPQ----------------------------------------E-DLEALVMPTLRQAAEDKSW- 256 (588)
T ss_dssp HHTTHHHHHHHHHHHSCH----------------------------------------H-HHHHHTHHHHHHHHTCSSH-
T ss_pred HHHHHHHHHHHHHHhCCH----------------------------------------H-HHHHHHHHHHHHHccCCCH-
Confidence 555666666655421110 0 0112344667777766544
Q ss_pred HHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchh-hHHhhhchhHHHHHHHhc
Q 000124 406 LVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGI-WEAIGKREGIQLLISLLG 484 (2138)
Q Consensus 406 ~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~-~~~I~e~ggIp~LV~LL~ 484 (2138)
.+|..++.+++.+..... ........++.++.++...++.++..++.+|..++..-... .........+|.+..+++
T Consensus 257 ~vR~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~ 334 (588)
T 1b3u_A 257 RVRYMVADKFTELQKAVG--PEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVS 334 (588)
T ss_dssp HHHHHHHHTHHHHHHHHC--HHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhC--cccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhc
Confidence 489999999998864321 11123356788899999999999999999999888753221 111122445788889999
Q ss_pred CCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhh
Q 000124 485 LSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFL 564 (2138)
Q Consensus 485 s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv 564 (2138)
+.++.+|..++.+|..++...... ......+|.+..++++.++++|..++.+|..+....... . .....+|.+.
T Consensus 335 d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~-~~~~~lp~l~ 408 (588)
T 1b3u_A 335 DANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR--Q-LSQSLLPAIV 408 (588)
T ss_dssp CSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH--H-HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH--H-HHHHHHHHHH
Confidence 999999999999999987632221 112346788899999999999999999888886521110 1 1134567788
Q ss_pred hccccCChhHHHHHHHHHHHHHHhh-----chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchh
Q 000124 565 WLLKSGGPKGQDASAMALTKLIRAA-----DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGL 639 (2138)
Q Consensus 565 ~LLkS~~~evq~~Aa~AL~nLs~~~-----e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI 639 (2138)
.++++.++.++..++.++..++..- ....++.+.+++.+.+..++..+..+++.+.......... ...+
T Consensus 409 ~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~------~~ll 482 (588)
T 1b3u_A 409 ELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAH------ATII 482 (588)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHH------HHTH
T ss_pred HHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHH------HHHH
Confidence 8888899999999999999998642 1357788999999999999999999999987654332221 2357
Q ss_pred hHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhh
Q 000124 640 RSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMS 719 (2138)
Q Consensus 640 ~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~ 719 (2138)
+.|..++++.+..+|..++.++..++..-. .......+++.|++++++.++.+|..++.+|+.+...... .
T Consensus 483 p~l~~~~~~~~~~~R~~a~~~l~~l~~~~~---~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~------~ 553 (588)
T 1b3u_A 483 PKVLAMSGDPNYLHRMTTLFCINVLSEVCG---QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN------S 553 (588)
T ss_dssp HHHHHTTTCSCHHHHHHHHHHHHHHHHHHH---HHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH------H
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch------h
Confidence 888888888899999999999999976311 1123356889999999999999999999999999863221 1
Q ss_pred HHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhh
Q 000124 720 YIAEGDVKPLIKLAKTSSIDAAETAVAALANLL 752 (2138)
Q Consensus 720 I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa 752 (2138)
.....+++.|..++.+.+.++|..|..+|..+.
T Consensus 554 ~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 554 TLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 223446677888888999999999999998764
No 35
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.83 E-value=1.1e-19 Score=209.95 Aligned_cols=240 Identities=18% Similarity=0.197 Sum_probs=214.4
Q ss_pred chHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHH
Q 000124 432 EAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWA 511 (2138)
Q Consensus 432 ~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~ 511 (2138)
...+.++.++.++++++|..++.+|.++...+.+.+..+.+.|+++.|+++++++++.++..|+++|++++..+++++..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 34678999999999999999999998766655677888899999999999999999999999999999999877899999
Q ss_pred HHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhch
Q 000124 512 ITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADS 591 (2138)
Q Consensus 512 I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~ 591 (2138)
+.+.|+++.|+++|+++++.+++.|+++|++|+.+.+.....+.+.|+++.|+.+++++++.++..++++|++++...+
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~- 170 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN- 170 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH-
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh-
Confidence 9999999999999999999999999999999998666654778889999999999999999999999999999974311
Q ss_pred hhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhh
Q 000124 592 ATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDI 671 (2138)
Q Consensus 592 ~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~ 671 (2138)
. ....+.+.|+++.|+.+++++++++++.|+++|.+|+..+++.
T Consensus 171 ---------------~---------------------~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 214 (252)
T 4db8_A 171 ---------------E---------------------QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 214 (252)
T ss_dssp ---------------H---------------------HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHH
T ss_pred ---------------H---------------------HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 0 1112345788999999999999999999999999999878899
Q ss_pred hhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 000124 672 CGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2138)
Q Consensus 672 r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~ 708 (2138)
+..+.+.|+++.|+++++++++.++..|+++|.||+.
T Consensus 215 ~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 215 KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999974
No 36
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.81 E-value=3.1e-16 Score=212.75 Aligned_cols=687 Identities=15% Similarity=0.124 Sum_probs=429.6
Q ss_pred cCCCHHHHHHHHHHHHHHHHh-----cHHHHHHHhhhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhHHHHHhcC
Q 000124 51 NMSSPQERELITMRILTIAKA-----KKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGG 125 (2138)
Q Consensus 51 ~s~s~~ere~AL~~L~~L~~~-----~d~ak~lI~~~aGgVp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G 125 (2138)
.+.+...|..|.-.|.+.... +++.+..| -+.+++.|.+.++.+|..++.++..++..+... .-.+
T Consensus 58 ~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~i------k~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~---~wp~ 128 (852)
T 4fdd_A 58 KSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFI------KSECLNNIGDSSPLIRATVGILITTIASKGELQ---NWPD 128 (852)
T ss_dssp TTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHH------HHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTT---TCTT
T ss_pred CCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHH------HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCcc---ccHH
Confidence 456778889898888887543 33444444 345666778889999999999999886533110 1125
Q ss_pred ChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHH--HHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhc
Q 000124 126 CIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIF--VTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCG 203 (2138)
Q Consensus 126 ~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~I--veaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs 203 (2138)
.++.|++.+.++++.+++.++.+|..++.... .......+ .-...+|.+++.+.+. +..++..|+++|.++..
T Consensus 129 ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~--~~~~~~~~~~~~~~il~~l~~~l~~~---~~~vR~~A~~aL~~~~~ 203 (852)
T 4fdd_A 129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDSA--EILDSDVLDRPLNIMIPKFLQFFKHS---SPKIRSHAVACVNQFII 203 (852)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHT--THHHHCSSSSCHHHHHHHHTTTTTCS---SHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhH--HHhchhhhcchHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHh
Confidence 68899999998899999999999999986311 11000000 0123677777777643 46789999999998876
Q ss_pred CCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHH
Q 000124 204 DKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADAL 283 (2138)
Q Consensus 204 ~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL 283 (2138)
........ .-...++.+...+.+++++++..++.+|..++...++...... .+.++.++..+. +.+..++..|...+
T Consensus 204 ~~~~~~~~-~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~-~~~~~vr~~a~e~l 280 (852)
T 4fdd_A 204 SRTQALML-HIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQ-DQDENVALEACEFW 280 (852)
T ss_dssp TTCHHHHT-SHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHT-CSSHHHHHHHHHHH
T ss_pred cccHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHcc-CCcHHHHHHHHHHH
Confidence 54321100 0113567888888888999999999999999965443222221 246777777777 46778999999999
Q ss_pred HHHhhcCHHHHHHHHh--cCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhH
Q 000124 284 EALSSKSIKAKKAVVA--ADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPV 361 (2138)
Q Consensus 284 ~nLs~~s~e~Rk~i~e--~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~ 361 (2138)
..++.. ...++.+.. ...++.++..+.....+. . +..+....- ..-.+....-+.....
T Consensus 281 ~~l~~~-~~~~~~~~~~~~~l~p~ll~~l~~~e~d~-~----------------~~~~d~~ed-~~~dd~~~~~~vr~~a 341 (852)
T 4fdd_A 281 LTLAEQ-PICKDVLVRHLPKLIPVLVNGMKYSDIDI-I----------------LLKGDVEGG-SGGDDTISDWNLRKCS 341 (852)
T ss_dssp HHHTTS-TTHHHHHTTTHHHHHHHHHHHTSCCHHHH-H----------------HHHC-------------CCCCHHHHH
T ss_pred HHHhcc-hhHHHHHHHHHHHHHHHHHHHcCCcHhHH-H----------------HhcCCcccc-cccccccccchHHHHH
Confidence 888764 223332211 123344444442211000 0 000000000 0000000000112223
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHH
Q 000124 362 ADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLI 441 (2138)
Q Consensus 362 A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL 441 (2138)
+..++.++... . .. + -..+.+.+..++.+.+ +.+|..++.+++.+.....-.-.-.-.+.++.++.++
T Consensus 342 ~~~L~~la~~~---~------~~-~-~~~l~~~l~~~l~~~~-~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l 409 (852)
T 4fdd_A 342 AAALDVLANVY---R------DE-L-LPHILPLLKELLFHHE-WVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCL 409 (852)
T ss_dssp HHHHHHHHHHH---G------GG-G-HHHHHHHHHHHHTCSS-HHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHT
T ss_pred HHHHHHHHHhc---c------HH-H-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHc
Confidence 33444443321 0 01 1 1245577778887765 4599999999999976543111112235688899999
Q ss_pred ccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHH
Q 000124 442 TMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPL 521 (2138)
Q Consensus 442 ~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~L 521 (2138)
.+.++.++..++.++.+++...........-.+.++.|+..+.+.++.+|..|+++|.+++...... ....-.+.++.|
T Consensus 410 ~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~-l~~~l~~ll~~L 488 (852)
T 4fdd_A 410 SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE-LVPYLAYILDTL 488 (852)
T ss_dssp TCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG-GGGGHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHh-hHhHHHHHHHHH
Confidence 9999999999999999988752221111122456888999998889999999999999998643221 111224567777
Q ss_pred HHHhhhCCHHHHHHHHHHHHHHhcCCh---hHHHHHHHcCCcchhh---hccccCChhHHHHHHHHHHHHHHhhch----
Q 000124 522 VQLLEAGSQKAREVAAHVLWILCCHSE---DIRACVESAGAVPAFL---WLLKSGGPKGQDASAMALTKLIRAADS---- 591 (2138)
Q Consensus 522 V~LLks~d~~vre~Aa~aL~nLs~~sd---~~r~~I~e~GaI~aLv---~LLkS~~~evq~~Aa~AL~nLs~~~e~---- 591 (2138)
+.+++..+......+..++..++.... .....+ ...++.++ ..+++.+++++ .+..++..++..-..
T Consensus 489 ~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~--~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~ 565 (852)
T 4fdd_A 489 VFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI--QMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLP 565 (852)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHH--HHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHH
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHH--HHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHH
Confidence 788887777776677777777753100 001111 12345555 34456667664 778888877765322
Q ss_pred ---hhHHHHHHHhcC-----------------CCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCH
Q 000124 592 ---ATINQLLALLLG-----------------DSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNE 651 (2138)
Q Consensus 592 ---~aI~~Li~LL~~-----------------~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~ 651 (2138)
..++.++.++.. .+.+.+..+.++++.++..... .+...+...+.++.+...+++.++
T Consensus 566 ~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~--~~~~~~~~~~~~~~l~~~l~~~~~ 643 (852)
T 4fdd_A 566 YCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGG--NIEQLVARSNILTLMYQCMQDKMP 643 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGG--GGHHHHHTCCHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhH--hHHHHhcCCcHHHHHHHHhCCCCh
Confidence 223333444321 1345666777888887754332 122223345788999999988899
Q ss_pred HHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHh
Q 000124 652 ENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIK 731 (2138)
Q Consensus 652 evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~ 731 (2138)
++|+.+..++..++...++....... ..++.+.+.+..+...++..|+++++.++..... ... -.-..++++|+.
T Consensus 644 ~vr~~a~~~l~~l~~~~~~~~~~~l~-~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~--~~~--p~~~~il~~L~~ 718 (852)
T 4fdd_A 644 EVRQSSFALLGDLTKACFQHVKPCIA-DFMPILGTNLNPEFISVCNNATWAIGEISIQMGI--EMQ--PYIPMVLHQLVE 718 (852)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGG--GGG--GGTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhH--hHH--HHHHHHHHHHHH
Confidence 99999999999998644433333222 3678888888888889999999999999863221 221 122457888999
Q ss_pred hhhcC--CHHHHHHHHHHHHHhhC-CchHHHHHHhcCcHHHHHHHHhC-CCHHHHHHHHHHHHHhhhcCC
Q 000124 732 LAKTS--SIDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTRVLAE-GTSEGKKNASRALHQLLKHFP 797 (2138)
Q Consensus 732 LL~s~--s~~Vr~eAl~ALaNLa~-~~e~r~~Ii~~g~L~~LV~LL~~-~~~~Vr~~Aa~AL~nL~~~~~ 797 (2138)
+++++ ...+++.|+.+++.|+. +|+.-.. .-...++++.+.|.. ++.+.+..|...++.+....|
T Consensus 719 ~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~-~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p 787 (852)
T 4fdd_A 719 IINRPNTPKTLLENTAITIGRLGYVCPQEVAP-MLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNP 787 (852)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGG-GHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCG
T ss_pred HhCCCCCCchHHHHHHHHHHHHHHhCHHHhCc-cHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhCh
Confidence 98874 46899999999999986 3331110 123467778887764 567779999999999998764
No 37
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.77 E-value=1.8e-13 Score=192.82 Aligned_cols=1076 Identities=15% Similarity=0.142 Sum_probs=582.1
Q ss_pred cHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHH-HHH
Q 000124 217 GVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIK-AKK 295 (2138)
Q Consensus 217 GI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e-~Rk 295 (2138)
.+..++.-+.++++++|..|..-|.+....+............++.++..+. +.+..+|..|..+|.++...... ...
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~~~~~~~~ 85 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSKVKEYQVE 85 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 3667788888899999999988888765322111111223467888888887 57789999999999999865332 222
Q ss_pred HHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHh
Q 000124 296 AVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVF 375 (2138)
Q Consensus 296 ~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l 375 (2138)
..++.|+..+.+++.. ++..+..+|..+.....+. ..
T Consensus 86 -----~i~~~Ll~~l~d~~~~---------vR~~a~~~L~~i~~~l~~~-----------~~------------------ 122 (1230)
T 1u6g_C 86 -----TIVDTLCTNMLSDKEQ---------LRDISSIGLKTVIGELPPA-----------SS------------------ 122 (1230)
T ss_dssp -----HHHHHHHHHTTCSSSH---------HHHHHHHHHHHHHHHCC---------------------------------
T ss_pred -----HHHHHHHHHhcCCcHH---------HHHHHHHHHHHHHHhCCCc-----------cc------------------
Confidence 2346677766665533 4555666665553211000 00
Q ss_pred hcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcC--chhHHHHhhhchHHHHHHHHccCCHHHHHHHH
Q 000124 376 EQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGN--IFLSQWVSHAEAKKVLIGLITMATADVREYLI 453 (2138)
Q Consensus 376 ~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n--~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa 453 (2138)
...........+.+.|...+.......++..++.+++.++.. ..+.. .....++.++..+.+.+..+|..++
T Consensus 123 ----~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~--~~~~ll~~l~~~L~~~~~~vR~~a~ 196 (1230)
T 1u6g_C 123 ----GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN--FHPSILTCLLPQLTSPRLAVRKRTI 196 (1230)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT--THHHHHHHHGGGGGCSSHHHHHHHH
T ss_pred ----ccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH--HHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 000000012245577777777433345899999999988632 11111 1134566777788888899999999
Q ss_pred HHHHHhhhccchhhHHhhhchhHHHHHHHhcCC-chhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHH
Q 000124 454 LSLTKLCRREVGIWEAIGKREGIQLLISLLGLS-SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKA 532 (2138)
Q Consensus 454 ~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~-d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~v 532 (2138)
.+|..++...++. + -...++.+++.+... +..+|..++.++..++...+. +..-.-...++.++..+.+.++++
T Consensus 197 ~al~~l~~~~~~~---~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~l~~~ll~~l~d~~~~v 271 (1230)
T 1u6g_C 197 IALGHLVMSCGNI---V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH-RIGEYLEKIIPLVVKFCNVDDDEL 271 (1230)
T ss_dssp HHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG-GGTTSCTTHHHHHHHHHSSCCTTT
T ss_pred HHHHHHHHhcCHH---H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHhcCCCHHH
Confidence 9999988753221 1 134577888777544 346788889999988874332 111122456778888888888999
Q ss_pred HHHHHHHHHHHhcCCh-hHHHHHHHcCCcchhhhccc-------------------------------------cCChhH
Q 000124 533 REVAAHVLWILCCHSE-DIRACVESAGAVPAFLWLLK-------------------------------------SGGPKG 574 (2138)
Q Consensus 533 re~Aa~aL~nLs~~sd-~~r~~I~e~GaI~aLv~LLk-------------------------------------S~~~ev 574 (2138)
|+.+..++..+..... ..+..+ ...++.++..++ +....+
T Consensus 272 R~~a~~~l~~l~~~~~~~~~~~l--~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~v 349 (1230)
T 1u6g_C 272 REYCIQAFESFVRRCPKEVYPHV--STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKV 349 (1230)
T ss_dssp HHHHHHHHHHHHHCTTCCCHHHH--HHHHHHHTTCCCCC------------------------------------CTTHH
T ss_pred HHHHHHHHHHHHHHChHHHHHhH--HHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHH
Confidence 9999999988865321 111111 122333333332 112457
Q ss_pred HHHHHHHHHHHHHhhc-------hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcc-----------------hHHHH
Q 000124 575 QDASAMALTKLIRAAD-------SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQ-----------------EDLVQ 630 (2138)
Q Consensus 575 q~~Aa~AL~nLs~~~e-------~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~-----------------~d~v~ 630 (2138)
|+.|+.+|..++.... ...++.++..+.+.+++++..+..++..+...... .+...
T Consensus 350 R~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (1230)
T 1u6g_C 350 RRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQ 429 (1230)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHH
T ss_pred HHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHH
Confidence 8889999998875321 23467777778888889999999988877653211 11111
Q ss_pred hhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCH--HHHHHHHHHHHHhcC
Q 000124 631 KGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQ--MVATQSARALGALSR 708 (2138)
Q Consensus 631 ~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~--~Vk~~AA~ALanLa~ 708 (2138)
.. -...++.+...+++.++.+|..++.+|..++...++.... .-...++.+...|.+.++ .++..++.++..+..
T Consensus 430 ~~--l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~-~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~ 506 (1230)
T 1u6g_C 430 SQ--VPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQ-HIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILC 506 (1230)
T ss_dssp HH--TTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGG-GHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHH
T ss_pred HH--hhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHH-HHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHH
Confidence 11 1224555666688899999999999999998743322211 113567788888888764 899999999998875
Q ss_pred CCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC--Cc-------hHHHHHHhcCcHHHHHHHH--hCC
Q 000124 709 PTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS--DP-------DIAAEVLLEDVVSALTRVL--AEG 777 (2138)
Q Consensus 709 s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~--~~-------e~r~~Ii~~g~L~~LV~LL--~~~ 777 (2138)
.... +... -.-..+++.|+..+.+.+..++..|+.++..++. .+ .....+ ...++.++..+ .+.
T Consensus 507 ~~~~-~~~~--~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~--~~ll~~ll~~l~~~d~ 581 (1230)
T 1u6g_C 507 NHSP-QVFH--PHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYI--KDLFTCTIKRLKAADI 581 (1230)
T ss_dssp SSCG-GGGH--HHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHH--HHHHHHHHHHHSCSSS
T ss_pred hCCH-HHHH--hHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHH--HHHHHHHHHHHhccCC
Confidence 2222 0111 1224588889999999889998889889888863 11 111111 34677788888 667
Q ss_pred CHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCcccCCcccccc
Q 000124 778 TSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALA 857 (2138)
Q Consensus 778 ~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~ 857 (2138)
++.+|..|+.+++.|+... ++.+... -...++.|...+.. ...+..++.+++.++....... ...|
T Consensus 582 ~~~vr~~a~~~lg~L~~~~--g~~~~~~--~~~~l~~L~~~l~~----e~~r~~~~~al~~i~~~~~~~~--~~~~---- 647 (1230)
T 1u6g_C 582 DQEVKERAISCMGQIICNL--GDNLGSD--LPNTLQIFLERLKN----EITRLTTVKALTLIAGSPLKID--LRPV---- 647 (1230)
T ss_dssp CHHHHHHHHHHHHHHHHHT--GGGCCTH--HHHHHHHHHHHTTS----SSHHHHHHHHHHHHTTCSSCCC--CHHH----
T ss_pred CHHHHHHHHHHHHHHHHHh--Cchhhhh--HHHHHHHHHHHhcc----chhHHHHHHHHHHHHhCccccc--hHHH----
Confidence 8999999999999999764 2222111 12344445555532 2357888999998885321100 0011
Q ss_pred cCCCchHHHHHhhhcCChHHHHHHHHHHHHhhccCCchhhhhhhcccccHHHHHHHHhccCCceeehhhhHHHHHhcccc
Q 000124 858 EVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALLICAAKEH 937 (2138)
Q Consensus 858 ~~~~~L~~Lv~ll~~~~~~vq~~AieiL~~L~~~~~~~~~~~~~~~~~~i~~La~~il~s~~~ev~~~~~~~~i~a~k~~ 937 (2138)
.+..++.|...+.+.++.+|..++..|..++...+... . ..-+..+...++.- . ....
T Consensus 648 -~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~----~--~~~v~~~l~~ll~l-----l----------~~~D 705 (1230)
T 1u6g_C 648 -LGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSL----T--AAMIDAVLDELPPL-----I----------SESD 705 (1230)
T ss_dssp -HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTC----C--HHHHHHHHTTCGGG-----S----------CTTC
T ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccC----C--HHHHHHHHHHHHhh-----c----------Ccch
Confidence 12246677777778888899999999999988664211 0 00000111000000 0 0000
Q ss_pred hhhHHHHHhhcCCcHHHHHHHHHHhhhhccCCCCCcccccCCCccccccccccccCCcCCCCccchhhHHHHHHHHHhcc
Q 000124 938 KKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRGYMERTAFQEADDFDVPDPATILGGTVALWLLLIISSF 1017 (2138)
Q Consensus 938 ~~~~~~~L~~~g~~~~~i~~Lv~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ll~~~~~~ 1017 (2138)
.. ....-...|..|.+. +|. .+ .+. ....+ =.++..+.+.
T Consensus 706 ~~----------~~~~~~~~L~~l~~~-----~~~-------------~~-------~~~----~~~~l-~~~~~~l~~~ 745 (1230)
T 1u6g_C 706 MH----------VSQMAISFLTTLAKV-----YPS-------------SL-------SKI----SGSIL-NELIGLVRSP 745 (1230)
T ss_dssp HH----------HHHHHHHHHHHHTTS-----CGG-------------GG-------GGT----TTTTH-HHHHHHHTCT
T ss_pred HH----------HHHHHHHHHHHHHHh-----Cch-------------hH-------HHh----HHhHH-HHHHHHHcCc
Confidence 00 000111112222221 100 00 000 00000 0111111111
Q ss_pred CCCCcchheeccchHHHHHHhhcc-CCCCccccccchhhhHHHHHHHHHccCCccccchhhhchHHHHHHHhcchhhhhH
Q 000124 1018 LRNNNVTVMEAGALEALSDKLASY-TSNPQAEFEDTEGIWISALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDR 1096 (2138)
Q Consensus 1018 ~~~~k~~~~e~g~~~~l~~~l~~~-~~~~q~~~e~~~~~~~~~~ll~~lf~~~~~~~~~~~~~~~~~l~~~l~~~~~~~r 1096 (2138)
.+...+++++..+.... ..++. ... .-.++..|++.-.....+ ...+..|
T Consensus 746 -------~~~~~~~~~l~~~~~~l~~~~~~---~~~-----~~~ll~~l~~~~~~~~~~--------------~~~~~~~ 796 (1230)
T 1u6g_C 746 -------LLQGGALSAMLDFFQALVVTGTN---NLG-----YMDLLRMLTGPVYSQSTA--------------LTHKQSY 796 (1230)
T ss_dssp -------TCCHHHHHHHHHHHHHHHTTCCT---TCS-----HHHHHHHHSTTTTTC------------------CCHHHH
T ss_pred -------ccchHHHHHHHHHHHHHHhcCCC---CCC-----HHHHHHHHhccccCCCCc--------------cccchhh
Confidence 11112233333222111 11110 001 122333333221100000 0133457
Q ss_pred HHHHHHHHHhhhcCCcchhHHhhhcccchhhhhhhcccccCCchhhhhhhhhhhccCCcHHHHHhhhcccccccchhhhh
Q 000124 1097 FFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESDTPNLVALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARK 1176 (2138)
Q Consensus 1097 ~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lf~~~~ir~~~~a~~ 1176 (2138)
..+|+.++.++..... ..+ .++.+ +..++. +|+
T Consensus 797 ~~~a~~i~~~~~~~~~-----------~~~--~~~~~----------~~~~~~---~~~--------------------- 829 (1230)
T 1u6g_C 797 YSIAKCVAALTRACPK-----------EGP--AVVGQ----------FIQDVK---NSR--------------------- 829 (1230)
T ss_dssp HHHHHHHHHHHHHSCC-----------CSH--HHHTT----------TTTTTT---TTT---------------------
T ss_pred HHHHHHHHHHHHhcch-----------hhH--HHHHH----------HHHHhC---CCC---------------------
Confidence 7888887766542111 111 00000 111111 110
Q ss_pred hhhHHHHhccCCCCCCCChhHHHHHHHHhhcCCCcchhHHhhcchhHHHHHHhcCCCCcccHHHHHHHHHHhhcCccccc
Q 000124 1177 SIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLIR 1256 (2138)
Q Consensus 1177 ~i~~lv~~l~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~e~~~l~~l~k~ls~~~~~~~~~~~~~l~~~lf~~~~~~~ 1256 (2138)
..+.....++..|-.+...-+-.. +....+.+.+.|+. +.++.+.+|+..++.++. .
T Consensus 830 -------------~~~~~~~~~l~~l~~~g~~~~~~~----~~~l~~~~~~~l~~-~~~~Vr~aAa~aLg~l~~-----~ 886 (1230)
T 1u6g_C 830 -------------STDSIRLLALLSLGEVGHHIDLSG----QLELKSVILEAFSS-PSEEVKSAASYALGSISV-----G 886 (1230)
T ss_dssp -------------CCHHHHHHHHHHHHHHHHHSCCCS----CTHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHH-----H
T ss_pred -------------ccHHHHHHHHHHHHHhcccCCCcc----cccHHHHHHHHhCC-CCHHHHHHHHHHhHHHhc-----c
Confidence 000000112111111110000000 01134666777764 678888888888888762 1
Q ss_pred chhhhhhHHHHHHHHHcCCCchHhHHHHHHhhhcccccccch-HhhcCcchhHHHhhcccchhHHHHHHHHHHhhccCCC
Q 000124 1257 YEASLSSLNQLIAVLHLGSRGARLSAARALHQLFDAENIKDS-DLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNT 1335 (2138)
Q Consensus 1257 ~~~a~~~~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~-~~a~~~~~~l~~~~~~~~~~~~~~~~~al~kl~~~~~ 1335 (2138)
+.. .-+..+...+..+ ...||....||.+.+......+. ..+.+...+|+..+....+.....+-.+|=+|..-.+
T Consensus 887 ~~~--~~lp~ll~~l~~~-~~~~~~~l~al~e~i~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~ 963 (1230)
T 1u6g_C 887 NLP--EYLPFVLQEITSQ-PKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDP 963 (1230)
T ss_dssp THH--HHHHHHHHHHHSC-GGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG
T ss_pred CHH--HHHHHHHHHHhcc-chhhHHHHHHHHHHHhcCChhhHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccCh
Confidence 111 2244555556554 56799999999998864221111 1123444566666665555555555555555522211
Q ss_pred ccccchhhcccchHHHHHHHhccCCcHHHHHHHHHHHHHHhcCcccccCccccchhhhhhhhhcCChhHHHHHHHHHHHh
Q 000124 1336 SKACLLTDIDGNLLESLYKILSSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFER 1415 (2138)
Q Consensus 1336 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~a~l~~~l~~~~~i~~~~~a~~~~~pli~l~~s~~~~~~~~~~~~~~~ 1415 (2138)
...+..+.+.|.+++ ...+..+...++.++++..=...+.-..++.||+..|+.+...|.+++..+|..
T Consensus 964 ----------~~l~p~l~~~l~~~~-~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~ 1032 (1230)
T 1u6g_C 964 ----------ETLLPRLKGYLISGS-SYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNS 1032 (1230)
T ss_dssp ----------GGTHHHHTTTSSSSC-HHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 345566666666644 446666666666666543211112235678899999999999999999999998
Q ss_pred hhhhhhhhhhhhhcchhhhhHhhcc------------------ccchhHHHHHHHHHHHhhcCCCchhHHHHhhhhHhHH
Q 000124 1416 LLDDEQQVELVEGYDVVDLLVRLVS------------------GTNHRLVEATVCALIKLGKDRTPRKLQMVKAGIIDNC 1477 (2138)
Q Consensus 1416 ll~~e~~~~~~~~~~~v~~lv~~~~------------------~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~g~i~~~ 1477 (2138)
+.......=...-...+.+|+.... -.+..+-+.|..|+-++=...+. ++++. -++.++
T Consensus 1033 ~~~~~~~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~-~i~~~--~~~~~~ 1109 (1230)
T 1u6g_C 1033 AAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLD-RLDIF--EFLNHV 1109 (1230)
T ss_dssp HHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCS-SSCHH--HHHHHH
T ss_pred HHhcChHhHHHHHHHHHHHHHHHhcccHHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHHHH-hCCHH--HHHHHH
Confidence 7643221100011224444444332 23347899999999999877665 34322 355555
Q ss_pred hhhCCCCchhHHHHHHHHHHhhhccchhccCccchhccchhhhhhhCC----------CcCchhHHHHHHHHHHhhcCCc
Q 000124 1478 LDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQP----------DFSLWGQHSALQALVNILEKPQ 1547 (2138)
Q Consensus 1478 ~~~~~~~p~~l~~~~a~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------~~~~~~~~~al~~l~~~~e~~~ 1547 (2138)
++=+|+-.+-=--+..-|.|+.+.+. -+..+..-..|+|+--++... +-...-++++|.++.-+...|.
T Consensus 1110 ~~gl~d~~di~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~qe~e~~~e~~r~~~r~~~~l~~~~~ 1188 (1230)
T 1u6g_C 1110 EDGLKDHYDIKMLTFLMLVRLSTLCP-SAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPE 1188 (1230)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHSCC-HHHHTTTTTTHHHHHHHHHCCCCTTSCHHHHHHHHHHHHHHHHHHHHTTSSCS
T ss_pred HcccCchHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHHHHhCCC
Confidence 55556631111111222233333221 112245566778876665332 1234557899999998887776
Q ss_pred ccc
Q 000124 1548 SLV 1550 (2138)
Q Consensus 1548 ~~~ 1550 (2138)
+..
T Consensus 1189 ~~~ 1191 (1230)
T 1u6g_C 1189 AEK 1191 (1230)
T ss_dssp CSS
T ss_pred ccc
Confidence 654
No 38
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.76 E-value=4.7e-14 Score=198.73 Aligned_cols=688 Identities=12% Similarity=0.097 Sum_probs=402.2
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHH-HHHHHhhhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhccCchh
Q 000124 39 STVAKFLEQLHANMSSPQERELITMRILTIAKAKKE-ARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDL 117 (2138)
Q Consensus 39 ~~V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~-ak~lI~~~aGgVp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~~ 117 (2138)
..+.++++.+. +.+...|..|...|.+....+.. ...... ...++.+++.|.+.++.+|..|+.+|+.++..-..
T Consensus 6 ~~l~~lL~~l~--s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~--~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~ 81 (1230)
T 1u6g_C 6 YHISNLLEKMT--SSDKDFRFMATNDLMTELQKDSIKLDDDSE--RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE 81 (1230)
T ss_dssp HHHHHHHHHTT--CSSHHHHHHHHHHHHHHTSSSCCSCCTTHH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH
T ss_pred hHHHHHHHhcC--CCCHhHHHHHHHHHHHHHcccccCCChhHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH
Confidence 34667777663 46777889898888776543200 000000 13578889999999999999999999988754221
Q ss_pred HHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCCh--hhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHH
Q 000124 118 RLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDH--VGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVT 195 (2138)
Q Consensus 118 r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~--~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al 195 (2138)
. .....++.++..|.++++.+|..|+.+|..++..... .. .....-.-...+|.|++.+.+. .+..++..++
T Consensus 82 ~---~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~-~~~~~~~~~~~~~~llp~L~~~l~~~--~~~~~~~~al 155 (1230)
T 1u6g_C 82 Y---QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPP-ASSGSALAANVCKKITGRLTSAIAKQ--EDVSVQLEAL 155 (1230)
T ss_dssp H---HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC------CCTHHHHHHHHHHHHHHHHSCC--SCHHHHHHHH
T ss_pred H---HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCC-cccccchHHHHHHHHHHHHHHHHcCC--CchHHHHHHH
Confidence 1 1123467888888888888999999999999864211 10 0000112235889999999742 2356899999
Q ss_pred HHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhH
Q 000124 196 GALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISV 275 (2138)
Q Consensus 196 ~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~v 275 (2138)
.+|..++......... .....++.+...|.++++.+|..++.+|..++...++ .+ -...++.++..+....+...
T Consensus 156 ~~l~~~~~~~~~~l~~-~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~ 230 (1230)
T 1u6g_C 156 DIMADMLSRQGGLLVN-FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMST 230 (1230)
T ss_dssp HHHHHHHHHTCSSCTT-THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCS
T ss_pred HHHHHHHHHhHhHHHH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhH
Confidence 9999998532111000 1122467788888888899999999999999853322 11 23467888888864443456
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHH--hcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhh---cC-chh----HH
Q 000124 276 RASAADALEALSSKSIKAKKAVV--AADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIY---GG-MPA----LV 345 (2138)
Q Consensus 276 r~~Aa~aL~nLs~~s~e~Rk~i~--e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIs---Gg-is~----LI 345 (2138)
+..+..++..+.....+ .+. -...++.++..+.+.+.+ +++.+..++..+. +. +.+ ++
T Consensus 231 r~~a~~~l~~l~~~~~~---~~~~~l~~l~~~ll~~l~d~~~~---------vR~~a~~~l~~l~~~~~~~~~~~l~~li 298 (1230)
T 1u6g_C 231 TRTYIQCIAAISRQAGH---RIGEYLEKIIPLVVKFCNVDDDE---------LREYCIQAFESFVRRCPKEVYPHVSTII 298 (1230)
T ss_dssp CTTHHHHHHHHHHHSSG---GGTTSCTTHHHHHHHHHSSCCTT---------THHHHHHHHHHHHHCTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHhcCCCHH---------HHHHHHHHHHHHHHHChHHHHHhHHHHH
Confidence 77778888777653211 121 145678888888765433 5666666666554 21 222 23
Q ss_pred HHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCc-hh
Q 000124 346 VYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNI-FL 424 (2138)
Q Consensus 346 ~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~-~~ 424 (2138)
+.+...+..........+ ...... .+ .....+... ...... -......+.+|..++.++..+.... ..
T Consensus 299 ~~ll~~l~~d~~~~~~~d--~~~~~~---~~--~~~~~~~~~--~~~~~~--~~~~d~~~~vR~~A~~~l~~l~~~~~~~ 367 (1230)
T 1u6g_C 299 NICLKYLTYDPNYNYDDE--DEDENA---MD--ADGGDDDDQ--GSDDEY--SDDDDMSWKVRRAAAKCLDAVVSTRHEM 367 (1230)
T ss_dssp HHHTTCCCCC-----------------------------------------------CTTHHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHhCCCCCCCCccc--cccccc---cc--ccccccchh--hccccc--ccccccCHHHHHHHHHHHHHHHHhchhH
Confidence 333333322110000000 000000 00 000000000 000000 0011122347888999998886532 11
Q ss_pred HHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccch----------------hhHH--hhhchhHHHHHHHhcCC
Q 000124 425 SQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVG----------------IWEA--IGKREGIQLLISLLGLS 486 (2138)
Q Consensus 425 ~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~----------------~~~~--I~e~ggIp~LV~LL~s~ 486 (2138)
-.... ...++.++..+...++.++..++.++..+...... .... -.-...++.+.+.+++.
T Consensus 368 ~~~~~-~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~ 446 (1230)
T 1u6g_C 368 LPEFY-KTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEK 446 (1230)
T ss_dssp HHHHH-TTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCS
T ss_pred HHHHH-HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccC
Confidence 11111 23456666677777888999999888776653110 0000 01123456666778889
Q ss_pred chhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCC--HHHHHHHHHHHHHHhcC-C-hhHHHHHHHcCCcch
Q 000124 487 SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGS--QKAREVAAHVLWILCCH-S-EDIRACVESAGAVPA 562 (2138)
Q Consensus 487 d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d--~~vre~Aa~aL~nLs~~-s-d~~r~~I~e~GaI~a 562 (2138)
++.+|..++.+|+.+....++.-. -.-...++.+...|++.. ..++.+++..+..+... . +.....+ ...++.
T Consensus 447 ~~~vr~~~~~~L~~l~~~~~~~l~-~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l--~~llp~ 523 (1230)
T 1u6g_C 447 SVKTRQCCFNMLTELVNVLPGALT-QHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHV--QALVPP 523 (1230)
T ss_dssp CHHHHHHHHHHHHHHHHHSTTTTG-GGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHH--TTTHHH
T ss_pred CHHHHHHHHHHHHHHHHHchhhhH-HHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHH--HHHHHH
Confidence 999999999999988874332111 011245677777787764 58999999999988542 2 2222222 457788
Q ss_pred hhhccccCChhHHHHHHHHHHHHHHhhc--------------hhhHHHHHHHh--cCCCcchHHHHHHHHHHHHhhhcch
Q 000124 563 FLWLLKSGGPKGQDASAMALTKLIRAAD--------------SATINQLLALL--LGDSPSSKAHVIKVLGHVLTMALQE 626 (2138)
Q Consensus 563 Lv~LLkS~~~evq~~Aa~AL~nLs~~~e--------------~~aI~~Li~LL--~~~d~~V~~~A~~AL~~La~~~~~~ 626 (2138)
|+..+.+.++.++..+..++..++..-. ...++.++..+ .+.+.+++..+..+++.++......
T Consensus 524 L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~ 603 (1230)
T 1u6g_C 524 VVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDN 603 (1230)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCch
Confidence 8888888888888889889988875411 24567778888 5667789999999999987543221
Q ss_pred HHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 000124 627 DLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGAL 706 (2138)
Q Consensus 627 d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanL 706 (2138)
.... -...++.|...+++ +..|..++.++..++...........-..+++.|...+++.+..+|..++.++..+
T Consensus 604 --~~~~--~~~~l~~L~~~l~~--e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l 677 (1230)
T 1u6g_C 604 --LGSD--LPNTLQIFLERLKN--EITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDIL 677 (1230)
T ss_dssp --CCTH--HHHHHHHHHHHTTS--SSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHH
T ss_pred --hhhh--HHHHHHHHHHHhcc--chhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 0000 02235555555543 34677889999888763211111122345678888899999999999999999999
Q ss_pred cCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCC
Q 000124 707 SRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEG 777 (2138)
Q Consensus 707 a~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~ 777 (2138)
....+. ......+ ...+..+..++++.+.++...+..+|+.+.........-.....++.++.++.+.
T Consensus 678 ~~~~~~--~~~~~~v-~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~ 745 (1230)
T 1u6g_C 678 IKNYSD--SLTAAMI-DAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSP 745 (1230)
T ss_dssp HHHCCT--TCCHHHH-HHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCT
T ss_pred Hhcccc--cCCHHHH-HHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCc
Confidence 873322 1100000 0112222344556788888899999999975321100012345666666666544
No 39
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.75 E-value=3.7e-14 Score=191.09 Aligned_cols=738 Identities=13% Similarity=0.080 Sum_probs=446.2
Q ss_pred HHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcC--CHHHHHHHHHHHHHhccCc-
Q 000124 40 TVAKFLEQL-HANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSG--TPLAKVNVAATLSVLCKDE- 115 (2138)
Q Consensus 40 ~V~qlLe~L-~~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~--~~evr~~Aa~~L~~Ls~~e- 115 (2138)
.+.++++.+ .. .+...|..|-..|..+...+ ..|.+..|..++.+. ++.+|..|+.+|++.....
T Consensus 5 ~l~~~L~~~~~s--~d~~~r~~Ae~~L~~~~~~~---------~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w 73 (861)
T 2bpt_A 5 EFAQLLENSILS--PDQNIRLTSETQLKKLSNDN---------FLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKD 73 (861)
T ss_dssp HHHHHHHHHHHC--SSHHHHHHHHHHHHHHHHHC---------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSS
T ss_pred HHHHHHHHcccC--cCHHHHHHHHHHHHHHHhhC---------HHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcC
Confidence 466777665 43 56778999999998876542 134677788888764 6889999999998875321
Q ss_pred -----------------hhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHH
Q 000124 116 -----------------DLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWD 178 (2138)
Q Consensus 116 -----------------~~r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~ 178 (2138)
+.+. ..-..+++.|.++++.+|..++.+|..++.... +.+ . -...+|.|++
T Consensus 74 ~~~~~~~~~~~~~~l~~~~~~-----~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~---p~~--~--w~~ll~~L~~ 141 (861)
T 2bpt_A 74 SVKTQQFAQRWITQVSPEAKN-----QIKTNALTALVSIEPRIANAAAQLIAAIADIEL---PHG--A--WPELMKIMVD 141 (861)
T ss_dssp HHHHHHHHHHHHHHSCHHHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG---GGT--C--CHHHHHHHHH
T ss_pred hHHHHHHHHhHhhhCCHHHHH-----HHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhC---ccc--c--cHHHHHHHHH
Confidence 1112 223577788888889999999999999986311 000 0 0237888888
Q ss_pred hhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHH--HHhCcHHHHHHhhccC--CHHHHHHHHHHHHHHHhhcCCC-cch
Q 000124 179 QLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRAT--LEAGGVDIIVGLLSSD--NAAAQSNAASLLARLMLAFGDS-IPT 253 (2138)
Q Consensus 179 LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI--~e~GGI~~Lv~lL~s~--s~evq~~A~~aL~nLs~~~~e~-r~~ 253 (2138)
.+.++. ++.++..++.+|..++..-....+.+ ....-++.+...+.++ ++++|..++++|..+...-... ...
T Consensus 142 ~l~~~~--~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~ 219 (861)
T 2bpt_A 142 NTGAEQ--PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMERE 219 (861)
T ss_dssp HTSTTS--CHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSH
T ss_pred HHhcCC--CHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccCh
Confidence 887652 35688999999999987532110000 0111356667777776 7899999999999875211000 000
Q ss_pred hhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHH
Q 000124 254 VIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRA 333 (2138)
Q Consensus 254 l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~A 333 (2138)
......++.+...+. +.+..+|..+..++..+....++.-........++.++..+.+.+.. ++..+...
T Consensus 220 ~~~~~ll~~l~~~~~-~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---------vr~~a~~~ 289 (861)
T 2bpt_A 220 GERNYLMQVVCEATQ-AEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDK---------VASMTVEF 289 (861)
T ss_dssp HHHHHHHHHHHHHHT-CSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHH---------HHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH---------HHHHHHHH
Confidence 011224555666555 46778999999999888764221111111113445555555554422 45556655
Q ss_pred HHHhhcCc-------------------------hhHHHHhhhhcCCCC---------chhhHHHHHHHHHHHHHHhhcCC
Q 000124 334 LANIYGGM-------------------------PALVVYLGELSQSPR---------LAAPVADIIGALAYALMVFEQKS 379 (2138)
Q Consensus 334 LanIsGgi-------------------------s~LI~~L~elL~~~~---------ss~~~A~~L~aLa~~l~~l~q~~ 379 (2138)
+..++... ..+++.+...+.... ....+...+..++... .
T Consensus 290 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~---~--- 363 (861)
T 2bpt_A 290 WSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNC---G--- 363 (861)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHH---G---
T ss_pred HHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHc---c---
Confidence 55543210 223444444444321 1122344444444322 1
Q ss_pred CCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCch---hHHHHhhhchHHHHHHHHccCCHHHHHHHHHHH
Q 000124 380 GVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIF---LSQWVSHAEAKKVLIGLITMATADVREYLILSL 456 (2138)
Q Consensus 380 ~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~---~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL 456 (2138)
.. . -..+.+.+...+.+.+ +.+|..++.+++.+..... ....+ ...++.++..+.+.++.++..++.++
T Consensus 364 ---~~-~-~~~l~~~l~~~l~~~~-~~~r~~a~~~l~~i~~~~~~~~~~~~l--~~il~~l~~~l~d~~~~vr~~a~~~l 435 (861)
T 2bpt_A 364 ---NH-I-LEPVLEFVEQNITADN-WRNREAAVMAFGSIMDGPDKVQRTYYV--HQALPSILNLMNDQSLQVKETTAWCI 435 (861)
T ss_dssp ---GG-G-HHHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred ---Hh-H-HHHHHHHHHHHcCCCC-hhHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 01 1 1234566777777665 4589999999999975532 11111 24577788888888999999999999
Q ss_pred HHhhhccchhh-HHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCch---hHHHHHhcCCchHHHHHhhhC--CH
Q 000124 457 TKLCRREVGIW-EAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDD---SKWAITAAGGIPPLVQLLEAG--SQ 530 (2138)
Q Consensus 457 ~~Ls~~s~~~~-~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e---~r~~I~~aGaIp~LV~LLks~--d~ 530 (2138)
..++..-.... ..-.-...++.++..+++. +.++..++++|.+++....+ ....-.-...++.|+.++++. ++
T Consensus 436 ~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~ 514 (861)
T 2bpt_A 436 GRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEF 514 (861)
T ss_dssp HHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGG
T ss_pred HHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcch
Confidence 98886422110 0001234578888888765 88999999999999863210 100011123466777788754 37
Q ss_pred HHHHHHHHHHHHHhcCCh-hHHHHHHHcCCcchhhhcccc---------------CChhHHHHHHHHHHHHHHhhc----
Q 000124 531 KAREVAAHVLWILCCHSE-DIRACVESAGAVPAFLWLLKS---------------GGPKGQDASAMALTKLIRAAD---- 590 (2138)
Q Consensus 531 ~vre~Aa~aL~nLs~~sd-~~r~~I~e~GaI~aLv~LLkS---------------~~~evq~~Aa~AL~nLs~~~e---- 590 (2138)
.+|..+..++..+..... .....+ ...++.++..+.+ ....++..+..+|.+++....
T Consensus 515 ~vr~~a~~al~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 592 (861)
T 2bpt_A 515 NARASAFSALTTMVEYATDTVAETS--ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVE 592 (861)
T ss_dssp GHHHHHHHHHHHHHHHCCGGGHHHH--HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTG
T ss_pred HHHHHHHHHHHHHHHHcchhhHHHH--HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 899999999999876322 222221 1234445544432 134577889999998886532
Q ss_pred ---hhhHHHHHHHhcCCCc-chHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000124 591 ---SATINQLLALLLGDSP-SSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFS 666 (2138)
Q Consensus 591 ---~~aI~~Li~LL~~~d~-~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s 666 (2138)
...++.++..+.+.+. .++..+..+++.++...... .. .. -...++.|...+++.++++|..++.++..++.
T Consensus 593 ~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~-~~-~~--l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~ 668 (861)
T 2bpt_A 593 PVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKG-FE-KY--LETFSPYLLKALNQVDSPVSITAVGFIADISN 668 (861)
T ss_dssp GGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGG-GH-HH--HHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhh-HH-HH--HHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 2356777888887766 88998988988887542211 11 00 12357888888887888899999999999876
Q ss_pred cChhhhhhhhhCCCHHHHHHHhccCC--HHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCC-------
Q 000124 667 MRQDICGSLATDEIVNPCMRLLTSNT--QMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSS------- 737 (2138)
Q Consensus 667 ~~~e~r~~Ive~GaV~~Lv~LL~dgs--~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s------- 737 (2138)
.-.+.... .-...++.+.+.+.+.+ ..+|..+..+++.++...+. .... .-..++++|+..+....
T Consensus 669 ~~~~~~~~-~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~--~~~~--~l~~~l~~l~~~~~~~~~~~d~d~ 743 (861)
T 2bpt_A 669 SLEEDFRR-YSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA--DFIP--YLNDIMALCVAAQNTKPENGTLEA 743 (861)
T ss_dssp HTGGGGHH-HHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG--GGHH--HHHHHHHHHHHHHTCCCSSSSHHH
T ss_pred Hhchhccc-hHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhh--hHHH--HHHHHHHHHHHHHhcCCCCCChHH
Confidence 43221111 12356677778887764 78999999999999863222 2211 11346677777776421
Q ss_pred ----HHHHHHHHHHHHHhhCC-chHHHHHH--hcCcHHHHHHHHhCC----CHHHHHHHHHHHHHhhhcCCCchhhhhhh
Q 000124 738 ----IDAAETAVAALANLLSD-PDIAAEVL--LEDVVSALTRVLAEG----TSEGKKNASRALHQLLKHFPVGDVLKGNA 806 (2138)
Q Consensus 738 ----~~Vr~eAl~ALaNLa~~-~e~r~~Ii--~~g~L~~LV~LL~~~----~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i 806 (2138)
..++..++.++..++.. .+....+. -...++.+...+.+. +..+|+.|..+++.|+...+ +..+...
T Consensus 744 ~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~-g~~~~~~- 821 (861)
T 2bpt_A 744 LDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFP-DGSIKQF- 821 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCT-TSTTGGG-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcC-CchHHHH-
Confidence 34677888888887631 10011111 123455555666653 88999999999999987541 1222211
Q ss_pred hhhhhHHHHHHhhcc-CCCCchhHHHHHHHHHHHh
Q 000124 807 QCRFVVLTLVDSLNA-MDMNGTDVADALEVVALLA 840 (2138)
Q Consensus 807 ~~~gav~~LV~LL~s-~~~~~~~~~~AL~ALa~La 840 (2138)
.....++.|+..++. .+.+...+..|.-+++.++
T Consensus 822 ~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~ 856 (861)
T 2bpt_A 822 YGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQK 856 (861)
T ss_dssp TTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred HhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH
Confidence 112467888888874 2333445666666666655
No 40
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.74 E-value=4.7e-17 Score=182.95 Aligned_cols=200 Identities=20% Similarity=0.249 Sum_probs=179.7
Q ss_pred hchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHH
Q 000124 472 KREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIR 551 (2138)
Q Consensus 472 e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r 551 (2138)
..++.+.|+.+++++++.+|..|+++|++++..+++.+..+.+.|+++.|+++|+++++.+++.|+++|+|++.+++..+
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 35678899999999999999999999999998778889999999999999999999999999999999999998888888
Q ss_pred HHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHh
Q 000124 552 ACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQK 631 (2138)
Q Consensus 552 ~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~ 631 (2138)
..+.+.|+++.|+.+++++++.++..++++|+|++...+ + ...
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~----------------~---------------------~~~ 132 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN----------------E---------------------QIQ 132 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH----------------H---------------------HHH
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCH----------------H---------------------HHH
Confidence 999999999999999999999999999999999974311 0 011
Q ss_pred hhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 000124 632 GSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2138)
Q Consensus 632 ~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~ 708 (2138)
.+.+.|+++.|+.+++++++++++.|+++|.+++..+++.+..+.+.|+++.|++++.++++.++..|+++|.+|+.
T Consensus 133 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 13457899999999999999999999999999999779999999999999999999999999999999999999974
No 41
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.74 E-value=4.7e-14 Score=190.48 Aligned_cols=770 Identities=13% Similarity=0.084 Sum_probs=445.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcC--CHHHHHHHHHHHHHhcc-Cchh
Q 000124 41 VAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSG--TPLAKVNVAATLSVLCK-DEDL 117 (2138)
Q Consensus 41 V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~--~~evr~~Aa~~L~~Ls~-~e~~ 117 (2138)
+.++++.+. +.+.+.|..|...|..+...+ ..+.++.|+..+.++ ++.+|..|+.+|++... ..+.
T Consensus 3 l~~~L~~~~--s~d~~~r~~A~~~L~~~~~~~---------~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~ 71 (876)
T 1qgr_A 3 LITILEKTV--SPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPD 71 (876)
T ss_dssp HHHHHHGGG--CSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHHHhcC---------hhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchH
Confidence 455665553 467788999999998865432 135678888888774 58899999999988643 2111
Q ss_pred HHHH-----Hh------cCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCC
Q 000124 118 RLKV-----LL------GGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQ 186 (2138)
Q Consensus 118 r~~v-----~~------~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~e 186 (2138)
+... .. ...-+.+++.|.++++.+ ..++.++..++.... . ... -...+|.|++.+.+++ .
T Consensus 72 ~~~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~---~--~~~--w~~ll~~l~~~l~~~~-~ 142 (876)
T 1qgr_A 72 IKAQYQQRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEI---P--VNQ--WPELIPQLVANVTNPN-S 142 (876)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHG---G--GTC--CTTHHHHHHHHHHCTT-C
T ss_pred hHHHHHhhhccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhC---c--ccc--cHHHHHHHHHHHhCCC-C
Confidence 1110 00 011234778887777677 888889988875210 0 000 1347889999887652 1
Q ss_pred ChhHHHHHHHHHHHHhcCCCchhHHHHH--hCcHHHHHHhhccC--CHHHHHHHHHHHHHHHhhcCCC-cchhhccchHH
Q 000124 187 DNVVQGFVTGALRNLCGDKDGYWRATLE--AGGVDIIVGLLSSD--NAAAQSNAASLLARLMLAFGDS-IPTVIDSGAVK 261 (2138)
Q Consensus 187 d~~V~e~Al~aL~nLcs~~e~r~~aI~e--~GGI~~Lv~lL~s~--s~evq~~A~~aL~nLs~~~~e~-r~~l~~~GaL~ 261 (2138)
++.++..++.+|..++..-... .+.. ...++.+...+..+ +..+|..++.+|..+....... .........++
T Consensus 143 ~~~~r~~al~~l~~l~~~~~~~--~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~ 220 (876)
T 1qgr_A 143 TEHMKESTLEAIGYICQDIDPE--QLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQ 220 (876)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHH--HHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCHh--hHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3568899999999998743211 1111 12356677777776 6889999999999887321100 00111112566
Q ss_pred HHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCc
Q 000124 262 ALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGM 341 (2138)
Q Consensus 262 ~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgi 341 (2138)
.+...+. +.+..++..+..++..+....++.-........++.++..+.+.+.. ++..+...+.+++...
T Consensus 221 ~l~~~~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---------v~~~al~~l~~l~~~~ 290 (876)
T 1qgr_A 221 VVCEATQ-CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDE---------VALQGIEFWSNVCDEE 290 (876)
T ss_dssp HHHHHTT-CSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHH---------HHHHHHHHHHHHHHHH
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchH---------HHHHHHHHHHHHHHHH
Confidence 6666665 45678888888888888764322111112223444444444332211 3333444333332100
Q ss_pred hhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcC
Q 000124 342 PALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGN 421 (2138)
Q Consensus 342 s~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n 421 (2138)
... . ........+ .....+. .....+..
T Consensus 291 ~~~--------------------~--~~~~~~~~~-~~~~~~~------------------~~~~~~~~----------- 318 (876)
T 1qgr_A 291 MDL--------------------A--IEASEAAEQ-GRPPEHT------------------SKFYAKGA----------- 318 (876)
T ss_dssp HHH--------------------H--HHHHHHHHH-SSCCSSC------------------CCCHHHHH-----------
T ss_pred HhH--------------------h--hhhcccccc-CCCccch------------------hHHHHHHH-----------
Confidence 000 0 000000000 0000000 00000000
Q ss_pred chhHHHHhhhchHHHHHHHHc-------cCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHH
Q 000124 422 IFLSQWVSHAEAKKVLIGLIT-------MATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYA 494 (2138)
Q Consensus 422 ~~~~~~L~e~~gI~~LV~LL~-------sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~A 494 (2138)
+ ...++.++..+. ..+..++..+..+|..++....+ .+. ...++.+.+.+.+.+..+|..+
T Consensus 319 ------~--~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~-~~~l~~l~~~l~~~~~~~r~~a 386 (876)
T 1qgr_A 319 ------L--QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRDAA 386 (876)
T ss_dssp ------H--HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGH-HHHHHHHHHHTTCSSHHHHHHH
T ss_pred ------H--HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH---hhH-HHHHHHHHHHccCCChHHHHHH
Confidence 0 112233344432 23456788888888888765321 111 3456777788888999999999
Q ss_pred HHHHHHHhhcCc-hhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhH---HHHHHHcCCcchhhhccccC
Q 000124 495 VQLIAILTEQVD-DSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDI---RACVESAGAVPAFLWLLKSG 570 (2138)
Q Consensus 495 a~aL~nLa~~s~-e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~---r~~I~e~GaI~aLv~LLkS~ 570 (2138)
+.+|+.++.... +.... .-...++.++..|.+.++.+|..|+++|.+++...... ...+ ...++.|+..+.+.
T Consensus 387 ~~~l~~i~~~~~~~~~~~-~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l--~~~l~~l~~~l~~~ 463 (876)
T 1qgr_A 387 VMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL--APLLQCLIEGLSAE 463 (876)
T ss_dssp HHHHHHTSSSSCHHHHHH-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH--HHHHHHHHHHTTSC
T ss_pred HHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH--HHHHHHHHHHHcCC
Confidence 999999987443 21111 22457888999999999999999999999997642210 0110 23456677777774
Q ss_pred ChhHHHHHHHHHHHHHHhhc---------------------hhhHHHHHHHhcCC---CcchHHHHHHHHHHHHhhhcch
Q 000124 571 GPKGQDASAMALTKLIRAAD---------------------SATINQLLALLLGD---SPSSKAHVIKVLGHVLTMALQE 626 (2138)
Q Consensus 571 ~~evq~~Aa~AL~nLs~~~e---------------------~~aI~~Li~LL~~~---d~~V~~~A~~AL~~La~~~~~~ 626 (2138)
+.++..++++|.+++.... ...++.|.+++... +..++..+.++++.+......
T Consensus 464 -~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~- 541 (876)
T 1qgr_A 464 -PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAK- 541 (876)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCS-
T ss_pred -HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCch-
Confidence 8999999999999986521 23567777777654 346778889999988765332
Q ss_pred HHHHhhhcccchhhHHHHhhcC----------C-C----HHHHHHHHHHHHHHhhcCh-hhhhhhhhCCCHHHHHHHhcc
Q 000124 627 DLVQKGSAANKGLRSLVQVLNS----------S-N----EENQEYAASVLADLFSMRQ-DICGSLATDEIVNPCMRLLTS 690 (2138)
Q Consensus 627 d~v~~~l~~~GaI~aLV~LLks----------~-s----~evre~Aa~ALanL~s~~~-e~r~~Ive~GaV~~Lv~LL~d 690 (2138)
+... .-...++.++..+.. . + ++++..+..++..++..-. +.... .-..+++.++.++++
T Consensus 542 ~~~~---~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~l~~~l~~~l~~ 617 (876)
T 1qgr_A 542 DCYP---AVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQ-ISDVVMASLLRMFQS 617 (876)
T ss_dssp TTHH---HHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHT-THHHHHHHHHHHC--
T ss_pred hhHH---HHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhH-HHHHHHHHHHHHHHh
Confidence 1110 011234555544431 2 2 4567888889988876432 11111 123567788888877
Q ss_pred CC--HHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcC-CHHHHHHHHHHHHHhhC--CchHHHHHHhcC
Q 000124 691 NT--QMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTS-SIDAAETAVAALANLLS--DPDIAAEVLLED 765 (2138)
Q Consensus 691 gs--~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~-s~~Vr~eAl~ALaNLa~--~~e~r~~Ii~~g 765 (2138)
.+ ..++..+..++..++..... ..... . ..+++.|...+.+. +.+++..|+.+++.++. .+.....+ ..
T Consensus 618 ~~~~~~v~~~a~~~l~~l~~~~~~--~~~~~-~-~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ 691 (876)
T 1qgr_A 618 TAGSGGVQEDALMAVSTLVEVLGG--EFLKY-M-EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFC--DE 691 (876)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHGG--GGGGG-H-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHH--HH
T ss_pred ccCCCCccHHHHHHHHHHHHHHHh--hHHHH-H-HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhH--HH
Confidence 64 47899999999998862211 11111 1 23677888888886 89999999999999975 22222222 45
Q ss_pred cHHHHHHHHhC--CCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCC--C-------chhHHHHHH
Q 000124 766 VVSALTRVLAE--GTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDM--N-------GTDVADALE 834 (2138)
Q Consensus 766 ~L~~LV~LL~~--~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~--~-------~~~~~~AL~ 834 (2138)
.++.+.+.+.+ .+..+|..+.+++++++... ++.+.... ...++.+...+....+ + ...+..++.
T Consensus 692 i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~--g~~~~~~l--~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~ 767 (876)
T 1qgr_A 692 VMQLLLENLGNENVHRSVKPQILSVFGDIALAI--GGEFKKYL--EVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLE 767 (876)
T ss_dssp HHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHH--GGGGGGGH--HHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccccHHhhHHHHHHHHHHHHHh--chhHHHHH--HHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHH
Confidence 77788888876 46789999999999998742 12222111 3456666666643211 1 145667777
Q ss_pred HHHHHhhcc-cCCcccCCcccccccCCCchHHHH----HhhhcC--ChHHHHHHHHHHHHhhccCCc-hhhhhhhccccc
Q 000124 835 VVALLARTK-QGLNFTYPPWAALAEVPSSIEPLV----CCLAEG--PPPLQDKAIEILSRLCGDQPA-VLGDFLMARSSS 906 (2138)
Q Consensus 835 ALa~La~~~-~~~~~i~~~~~~~~~~~~~L~~Lv----~ll~~~--~~~vq~~AieiL~~L~~~~~~-~~~~~~~~~~~~ 906 (2138)
++..+...- .......+. .......++.+. ....++ ++.+|..|+.+|..++...+. ....+. .+.|
T Consensus 768 ~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~ 842 (876)
T 1qgr_A 768 AYTGIVQGLKGDQENVHPD---VMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVE--ARPM 842 (876)
T ss_dssp HHHHHHHHHHCSSSSCCGG---GGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHH--TSHH
T ss_pred HHHHHHHHHccCcccccch---HHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHH--hcHH
Confidence 777665321 110000000 000111233333 333455 567999999999999875432 122221 4578
Q ss_pred HHHHHHHHhccCCceeehhhhHHH
Q 000124 907 IGALADRIMHSSSLEVRVGGAALL 930 (2138)
Q Consensus 907 i~~La~~il~s~~~ev~~~~~~~~ 930 (2138)
+..|..+.+.++..++|..+...+
T Consensus 843 i~~ll~~~l~~~~~~~r~~a~~a~ 866 (876)
T 1qgr_A 843 IHELLTEGRRSKTNKAKTLARWAT 866 (876)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCHhHHHHHHHHH
Confidence 888988677778888887776655
No 42
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.73 E-value=1.6e-13 Score=184.97 Aligned_cols=732 Identities=13% Similarity=0.102 Sum_probs=441.7
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcc--CCHHHHHHHHHHHHHhhcCCCCCChhhH
Q 000124 88 LFISIL-RSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKS--ESTDTRKAAAEALYEVSSGGLSDDHVGM 164 (2138)
Q Consensus 88 ~LV~LL-ks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~s--ed~eVr~aAa~AL~nLS~~~~nkd~~gr 164 (2138)
.++..+ .+++++.|..|-..|..+.... ..+.+..++.++.+ .++.+|..|+..|.+...... ....
T Consensus 8 ~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~-------~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w---~~~~ 77 (861)
T 2bpt_A 8 QLLENSILSPDQNIRLTSETQLKKLSNDN-------FLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKD---SVKT 77 (861)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSS---HHHH
T ss_pred HHHHHcccCcCHHHHHHHHHHHHHHHhhC-------HHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcC---hHHH
Confidence 344445 6788899999999998874321 12346778888876 379999999999999864211 0000
Q ss_pred H------H--H---HHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCC-C-chhHHHHHhCcHHHHHHhhccC-CH
Q 000124 165 K------I--F---VTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDK-D-GYWRATLEAGGVDIIVGLLSSD-NA 230 (2138)
Q Consensus 165 e------~--I---veaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~-e-~r~~aI~e~GGI~~Lv~lL~s~-s~ 230 (2138)
. . + ....+-..|++.+.+++ +.++..+..+|..+.... + +.|.. .++.|+..+.++ ++
T Consensus 78 ~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~---~~vr~~~~~~l~~i~~~~~p~~~w~~-----ll~~L~~~l~~~~~~ 149 (861)
T 2bpt_A 78 QQFAQRWITQVSPEAKNQIKTNALTALVSIE---PRIANAAAQLIAAIADIELPHGAWPE-----LMKIMVDNTGAEQPE 149 (861)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHTCSS---HHHHHHHHHHHHHHHHHHGGGTCCHH-----HHHHHHHHTSTTSCH
T ss_pred HHHHHhHhhhCCHHHHHHHHHHHHHHHCCCc---hHHHHHHHHHHHHHHHhhCcccccHH-----HHHHHHHHHhcCCCH
Confidence 0 0 0 11223456777776543 567888888888887653 1 23433 368888888888 89
Q ss_pred HHHHHHHHHHHHHHhhcCCCcc--hhhccchHHHHHHHhccC-CCHhHHHHHHHHHHHHhhcCHHHH-HHHHhcCCHHHH
Q 000124 231 AAQSNAASLLARLMLAFGDSIP--TVIDSGAVKALVQLVGQN-NDISVRASAADALEALSSKSIKAK-KAVVAADGVPVL 306 (2138)
Q Consensus 231 evq~~A~~aL~nLs~~~~e~r~--~l~~~GaL~~LL~LL~s~-sd~~vr~~Aa~aL~nLs~~s~e~R-k~i~e~ggL~~L 306 (2138)
.++..++.+|..++..-....+ .-.....++.+...+... .+..+|..+..++.++...-...- ........++.|
T Consensus 150 ~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l 229 (861)
T 2bpt_A 150 NVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVV 229 (861)
T ss_dssp HHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHH
Confidence 9999999999999953221110 111234566667777643 267899999999888743211110 000001123444
Q ss_pred HHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCccc
Q 000124 307 IGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPF 386 (2138)
Q Consensus 307 I~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~ 386 (2138)
...+.+++.+ ++..+..+|..+....+.. -...+
T Consensus 230 ~~~~~~~~~~---------~r~~a~~~l~~l~~~~~~~-------------------------------------~~~~l 263 (861)
T 2bpt_A 230 CEATQAEDIE---------VQAAAFGCLCKIMSKYYTF-------------------------------------MKPYM 263 (861)
T ss_dssp HHHHTCSCHH---------HHHHHHHHHHHHHHHHGGG-------------------------------------CHHHH
T ss_pred HHHhcCCCHH---------HHHHHHHHHHHHHHHHHHH-------------------------------------HHHHH
Confidence 4444443322 4555666655543211000 00000
Q ss_pred chhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHH---------------HHh--hhchHHHHHHHHccC-----
Q 000124 387 DARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQ---------------WVS--HAEAKKVLIGLITMA----- 444 (2138)
Q Consensus 387 ~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~---------------~L~--e~~gI~~LV~LL~ss----- 444 (2138)
...+.+.+...+.+.+. .++..++..+..++....... .+. -...++.++..+...
T Consensus 264 -~~~l~~~~~~~~~~~~~-~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~ 341 (861)
T 2bpt_A 264 -EQALYALTIATMKSPND-KVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPE 341 (861)
T ss_dssp -HHTHHHHHHHHTTCSSH-HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-C
T ss_pred -HHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 00233445555555544 488888888887754421100 000 123456666666542
Q ss_pred --CHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHH
Q 000124 445 --TADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLV 522 (2138)
Q Consensus 445 --s~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV 522 (2138)
+..++..+..+|..++...++ .+ -...++.+.+.+.+.+..+|+.++.+++.++.........-.-...++.|+
T Consensus 342 d~~~~~r~~a~~~L~~l~~~~~~---~~-~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~ 417 (861)
T 2bpt_A 342 DDDWNVSMSAGACLQLFAQNCGN---HI-LEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSIL 417 (861)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHGG---GG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHHHHHHHccH---hH-HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 246788888999888865321 11 123466777788888999999999999999964321111111124677888
Q ss_pred HHhhhCCHHHHHHHHHHHHHHhcCChhH---HHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc---------
Q 000124 523 QLLEAGSQKAREVAAHVLWILCCHSEDI---RACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD--------- 590 (2138)
Q Consensus 523 ~LLks~d~~vre~Aa~aL~nLs~~sd~~---r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e--------- 590 (2138)
..+++.++.+|..++++|+.++..-... ... -...++.++..+++. +.++..++++|.+++....
T Consensus 418 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~ 494 (861)
T 2bpt_A 418 NLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH--LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYN 494 (861)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT--HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGG
T ss_pred HHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH--HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHH
Confidence 8888889999999999999987521000 000 023466777777775 8999999999999986521
Q ss_pred --hhhHHHHHHHhcCCC--cchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcC---------------CCH
Q 000124 591 --SATINQLLALLLGDS--PSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNS---------------SNE 651 (2138)
Q Consensus 591 --~~aI~~Li~LL~~~d--~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks---------------~s~ 651 (2138)
...++.|++++...+ ++++..+.++++.+....... . ... -...++.++..+.. ...
T Consensus 495 ~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~-~-~~~--~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~ 570 (861)
T 2bpt_A 495 FYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT-V-AET--SASISTFVMDKLGQTMSVDENQLTLEDAQSLQ 570 (861)
T ss_dssp GHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG-G-HHH--HHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchh-h-HHH--HHHHHHHHHHHHHHHHhhhcccCChhhHHHHH
Confidence 235677788887433 678999999999987653321 1 000 01235555555542 134
Q ss_pred HHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCH-HHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHH
Q 000124 652 ENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQ-MVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLI 730 (2138)
Q Consensus 652 evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~-~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv 730 (2138)
+++..+..+|.+++..-+...... -...++.++..+++.+. .++..+..+++.++..... .... .-..+++.|.
T Consensus 571 ~~~~~~~~~l~~l~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~--~~~~--~l~~i~~~l~ 645 (861)
T 2bpt_A 571 ELQSNILTVLAAVIRKSPSSVEPV-ADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGK--GFEK--YLETFSPYLL 645 (861)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTGGG-HHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGG--GGHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhh--hHHH--HHHHHHHHHH
Confidence 577888999999887433322111 12567777888888776 8999999999998762221 2221 1234778888
Q ss_pred hhhhcCCHHHHHHHHHHHHHhhC--CchHHHHHHhcCcHHHHHHHHhCCC--HHHHHHHHHHHHHhhhcCCCchhhhhhh
Q 000124 731 KLAKTSSIDAAETAVAALANLLS--DPDIAAEVLLEDVVSALTRVLAEGT--SEGKKNASRALHQLLKHFPVGDVLKGNA 806 (2138)
Q Consensus 731 ~LL~s~s~~Vr~eAl~ALaNLa~--~~e~r~~Ii~~g~L~~LV~LL~~~~--~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i 806 (2138)
..+++.+.+++..++.++..++. +......+ ...++.+.+.+.+.+ +.+|..+..+++.++... ++.+....
T Consensus 646 ~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~--~~~~~~~l 721 (861)
T 2bpt_A 646 KALNQVDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVFGDIASNI--GADFIPYL 721 (861)
T ss_dssp HHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHH--GGGGHHHH
T ss_pred HHhccccHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHh--hhhHHHHH
Confidence 88888888999999999998864 22222222 346777888887764 889999999999998753 12222111
Q ss_pred hhhhhHHHHHHhhccCCC--C-------chhHHHHHHHHHHHhhcccCC-cccCCcccccccCCCchHHHHHhhhcC---
Q 000124 807 QCRFVVLTLVDSLNAMDM--N-------GTDVADALEVVALLARTKQGL-NFTYPPWAALAEVPSSIEPLVCCLAEG--- 873 (2138)
Q Consensus 807 ~~~gav~~LV~LL~s~~~--~-------~~~~~~AL~ALa~La~~~~~~-~~i~~~~~~~~~~~~~L~~Lv~ll~~~--- 873 (2138)
...++.++..+..... + ...+..++++++.+...-... .... .-.+.-+..+..++.+.
T Consensus 722 --~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~------~~~~~i~~~l~~~~~d~~~~ 793 (861)
T 2bpt_A 722 --NDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALF------PYVGTIFQFIAQVAEDPQLY 793 (861)
T ss_dssp --HHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHG------GGHHHHHHHHHHHHHCHHHH
T ss_pred --HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH------HHHHHHHHHHHHHHcCcccC
Confidence 3466777777753210 1 234677788888777431110 0000 00111234444444443
Q ss_pred -ChHHHHHHHHHHHHhhccC-CchhhhhhhcccccHHHHHHHHh
Q 000124 874 -PPPLQDKAIEILSRLCGDQ-PAVLGDFLMARSSSIGALADRIM 915 (2138)
Q Consensus 874 -~~~vq~~AieiL~~L~~~~-~~~~~~~~~~~~~~i~~La~~il 915 (2138)
+..+|..|+.+|..++... ......|. ...++..|.+.+-
T Consensus 794 ~~~~vr~~a~~~l~~l~~~~~g~~~~~~~--~~~~~~~ll~~l~ 835 (861)
T 2bpt_A 794 SEDATSRAAVGLIGDIAAMFPDGSIKQFY--GQDWVIDYIKRTR 835 (861)
T ss_dssp TSHHHHHHHHHHHHHHHHHCTTSTTGGGT--TCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHcCCchHHHHH--hcHHHHHHHHHHh
Confidence 7789999999999998754 22222222 1267888887765
No 43
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.73 E-value=9.4e-17 Score=180.46 Aligned_cols=200 Identities=21% Similarity=0.212 Sum_probs=182.7
Q ss_pred chhhHHHHHHHHcCCCChhHHHHHHHHHHHHhh-cCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccch
Q 000124 387 DARQIEDILVMLLKPHDNKLVQERVLEAMASLY-GNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVG 465 (2138)
Q Consensus 387 ~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~-~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~ 465 (2138)
...+..+.|+.++++.+.+ ++..++.+|.+++ .++.....+.+.++++.|+.++.++++.++..++.+|.+++.+++.
T Consensus 9 ~~~~~~~~l~~LL~s~~~~-v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 87 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQ-ELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 87 (210)
T ss_dssp ----CHHHHHHHTTCSCHH-HHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred cccchhHHHHHHhcCCCHH-HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH
Confidence 3445668999999988765 9999999999998 5567788899999999999999999999999999999999988788
Q ss_pred hhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhc
Q 000124 466 IWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCC 545 (2138)
Q Consensus 466 ~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~ 545 (2138)
.+..+.+.|+++.|+++++++++.++..|+++|+|++.++++.+..+.+.|+++.|+++|+++++.++..++++|.+++.
T Consensus 88 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 88 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 88999999999999999999999999999999999998777788888899999999999999999999999999999999
Q ss_pred CChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHH
Q 000124 546 HSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIR 587 (2138)
Q Consensus 546 ~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~ 587 (2138)
+++..+..+.+.|+++.|+.++.++++.+++.|+++|.+++.
T Consensus 168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 878888999999999999999999999999999999999863
No 44
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.69 E-value=2e-16 Score=183.12 Aligned_cols=198 Identities=22% Similarity=0.253 Sum_probs=167.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcc-CchhHH
Q 000124 41 VAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCK-DEDLRL 119 (2138)
Q Consensus 41 V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~~~evr~~Aa~~L~~Ls~-~e~~r~ 119 (2138)
+..+++.|+..+.+.+.+..|+..|.+++..++.+|..|.+ .|+||.|+++|+++++++|..|+.+|.+|+. +++++.
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~-~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQ-LRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH-TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 56677777665554467788999999999999999999988 8999999999999999999999999999997 588999
Q ss_pred HHHhcCChHHHHHhhcc-CCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCC---C----------CC
Q 000124 120 KVLLGGCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNP---K----------NK 185 (2138)
Q Consensus 120 ~v~~~G~Ip~Lv~LL~s-ed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s---~----------s~ 185 (2138)
.+.+.|+||+|+++|.+ .+.++++.|+.+|++|+. .+.++..+++ +++|.|++++.. + ..
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~-----~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~ 162 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS-----NDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGL 162 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-----SGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTT
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc-----ChhhHHHHHh-ccHHHHHHHHhccccCCccccccccccc
Confidence 99999999999999985 799999999999999996 4556778876 479999997741 1 11
Q ss_pred CChhHHHHHHHHHHHHhcCCCchhHHHHHhCc-HHHHHHhhccC------CHHHHHHHHHHHHHHHh
Q 000124 186 QDNVVQGFVTGALRNLCGDKDGYWRATLEAGG-VDIIVGLLSSD------NAAAQSNAASLLARLML 245 (2138)
Q Consensus 186 ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GG-I~~Lv~lL~s~------s~evq~~A~~aL~nLs~ 245 (2138)
.+..++++|.++|+||++.++...+.|++++| |+.|+.+++.. +...+++|+.+|+||++
T Consensus 163 ~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 163 LDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp CCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred chHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 25579999999999999977555688888755 89999999863 56789999999999984
No 45
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=4.6e-17 Score=173.38 Aligned_cols=126 Identities=19% Similarity=0.357 Sum_probs=108.2
Q ss_pred cCCceEEEEEeccccc--ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCC--CCCeEEEEEeecCC
Q 000124 2007 CLPGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPP--KGQKLHIICKSKNT 2082 (2138)
Q Consensus 2007 ~~~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p--~~~~l~~~~~~~~~ 2082 (2138)
+.+|.|.|+|++|.|| .+. |..||||++.+ .++++||+|+++++||+|||+|.|.+..++ ..+.|+|+|||++.
T Consensus 4 ~~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~-~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~ 81 (140)
T 2dmh_A 4 GSSGMLRVIVESASNIPKTKF-GKPDPIVSVIF-KDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFET 81 (140)
T ss_dssp CBCCEEEEEEEEEESCCCCSS-SCCCEEEEEEC-SSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTC
T ss_pred CCCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEE-CCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCC
Confidence 5789999999999999 456 89999999999 577788999999999999999999998765 47999999999999
Q ss_pred CCCc-ccceEEEEecceeecceecceee---cCCCCCCCCCccceEEEEEecCCCCC
Q 000124 2083 FGKS-TLGKVTIQIDKVVTEGVYSGLFN---LNHDNNKDSSSRTLEIEIIWSNRISD 2135 (2138)
Q Consensus 2083 ~~k~-~~g~~~~~~~~v~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~w~~~~~~ 2135 (2138)
+|++ .+|+|.|.|.++...+....+|. |.+. +++...+.+.++++|.+.+..
T Consensus 82 ~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~-~~~~~~G~l~l~~~~~p~~~~ 137 (140)
T 2dmh_A 82 IGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNE-KGQDTGATIDLVIGYDPPSGP 137 (140)
T ss_dssp SSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECT-TCCEEEEEEEEEEEECCCBSS
T ss_pred CCCCceEEEEEEEHHHhccCCCceeEEeeeeccCC-CCCCCCCEEEEEEEEECCCCC
Confidence 9765 89999999999988888888888 7665 222344778899999998653
No 46
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.68 E-value=3.4e-16 Score=181.19 Aligned_cols=195 Identities=16% Similarity=0.204 Sum_probs=163.0
Q ss_pred hHHHHHHHHccCCH--HHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHH
Q 000124 433 AKKVLIGLITMATA--DVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKW 510 (2138)
Q Consensus 433 gI~~LV~LL~sss~--evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~ 510 (2138)
.++.++.++.++++ ++|..++.+|.+++.++++++..+.+.|+||+|+++|+++++.+|+.|+++|+||+..+++++.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 47889999999887 8899999999999998888999999999999999999999999999999999999987789999
Q ss_pred HHHhcCCchHHHHHhhh-CCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccc---c-------------CChh
Q 000124 511 AITAAGGIPPLVQLLEA-GSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLK---S-------------GGPK 573 (2138)
Q Consensus 511 ~I~~aGaIp~LV~LLks-~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLk---S-------------~~~e 573 (2138)
.+.+.|++|+|+++|++ ++.++++.++.+|+||+.+ +.++..+.+ +++++|+.++. + .+++
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~-~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN-DKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-GGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-hhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHH
Confidence 99999999999999985 6999999999999999874 556666665 47999988653 1 2457
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhc-ccchhhHHHHhhcCC---
Q 000124 574 GQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSA-ANKGLRSLVQVLNSS--- 649 (2138)
Q Consensus 574 vq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~-~~GaI~aLV~LLks~--- 649 (2138)
++++|+.+|.||+.. +++. ++.++ ..|.++.|+.+++++
T Consensus 167 v~~na~~~L~nLss~------------------------------------~~~~-R~~~r~~~Gli~~Lv~~l~~~~~~ 209 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSA------------------------------------GADG-RKAMRRCDGLIDSLVHYVRGTIAD 209 (233)
T ss_dssp HHHHHHHHHHHHTTS------------------------------------CHHH-HHHHHTSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcC------------------------------------CHHH-HHHHHHCCCcHHHHHHHHHhhhhc
Confidence 777888887777632 1112 23344 356789999998763
Q ss_pred ---CHHHHHHHHHHHHHHhh
Q 000124 650 ---NEENQEYAASVLADLFS 666 (2138)
Q Consensus 650 ---s~evre~Aa~ALanL~s 666 (2138)
+...+|+|+.+|.||+.
T Consensus 210 ~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 210 YQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp TCTTCHHHHHHHHHHHHHCC
T ss_pred ccchhHHHHHHHHHHHHHHh
Confidence 56789999999999987
No 47
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.66 E-value=7.6e-13 Score=178.71 Aligned_cols=698 Identities=13% Similarity=0.087 Sum_probs=395.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHH--------HHHHHhh--hcCcHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 000124 42 AKFLEQLHANMSSPQERELITMRILTIAKAKKE--------ARLLIGS--HAQAMPLFISILRSGTPLAKVNVAATLSVL 111 (2138)
Q Consensus 42 ~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~--------ak~lI~~--~aGgVp~LV~LLks~~~evr~~Aa~~L~~L 111 (2138)
..++..+...+.+...|..|...|.+.....+. .+..+.. ....-+.+++.|.++++.+ ..++.++..+
T Consensus 38 ~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i 116 (876)
T 1qgr_A 38 VELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGI 116 (876)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHH
Confidence 334445554445677888898888886532211 1110000 0012244777788777777 7888888877
Q ss_pred ccCchhHHHHHhcCChHHHHHhhccC--CHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChh
Q 000124 112 CKDEDLRLKVLLGGCIPPLLSLLKSE--STDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNV 189 (2138)
Q Consensus 112 s~~e~~r~~v~~~G~Ip~Lv~LL~se--d~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~ 189 (2138)
+....... .-...++.+++.+.++ ++.+|..++.+|..++... ....- .-.-...++.+.+.+..+. ....
T Consensus 117 ~~~~~~~~--~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~---~~~~~-~~~~~~ll~~l~~~l~~~~-~~~~ 189 (876)
T 1qgr_A 117 ACAEIPVN--QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDI---DPEQL-QDKSNEILTAIIQGMRKEE-PSNN 189 (876)
T ss_dssp HHHHGGGT--CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS---CHHHH-GGGHHHHHHHHHHHHSTTC-SCHH
T ss_pred HHhhCccc--ccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc---CHhhH-HhHHHHHHHHHHHhhcCCC-CCHH
Confidence 64321100 0125678899999887 9999999999999998521 11100 0011235677777776542 1356
Q ss_pred HHHHHHHHHHHHhcCCCchh-HHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhc
Q 000124 190 VQGFVTGALRNLCGDKDGYW-RATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVG 268 (2138)
Q Consensus 190 V~e~Al~aL~nLcs~~e~r~-~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~ 268 (2138)
++..++.+|.+++..-.... ........++.+...+...+++++..++.+|..+....+...........++.++..+.
T Consensus 190 vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 269 (876)
T 1qgr_A 190 VKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK 269 (876)
T ss_dssp HHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence 88999999999875321110 00011124666777777778899999999999999655443333333366777777765
Q ss_pred cCCCHhHHHHHHHHHHHHhhcCHHHHH---HHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHH
Q 000124 269 QNNDISVRASAADALEALSSKSIKAKK---AVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALV 345 (2138)
Q Consensus 269 s~sd~~vr~~Aa~aL~nLs~~s~e~Rk---~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI 345 (2138)
+.+..++..+...+..++........ .....+.-+ . .+...+. + ..+..+ ++.++
T Consensus 270 -~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~--------~----~~~~~l---l~~ll 327 (876)
T 1qgr_A 270 -SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPP-----E-HTSKFYA--------K----GALQYL---VPILT 327 (876)
T ss_dssp -CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCC-----S-SCCCCHH--------H----HHHHHH---HHHHH
T ss_pred -CCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCc-----c-chhHHHH--------H----HHHHHH---hHHHH
Confidence 45678898998888888763111000 000000000 0 0000000 0 000000 01111
Q ss_pred HHhhhhcC-----CCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhc
Q 000124 346 VYLGELSQ-----SPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYG 420 (2138)
Q Consensus 346 ~~L~elL~-----~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~ 420 (2138)
..+.+... +.+....+...+..++... . .. + -..+.+.+...+.+.+ +.+|..++.+++.+..
T Consensus 328 ~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~---~------~~-~-~~~~l~~l~~~l~~~~-~~~r~~a~~~l~~i~~ 395 (876)
T 1qgr_A 328 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCC---E------DD-I-VPHVLPFIKEHIKNPD-WRYRDAAVMAFGCILE 395 (876)
T ss_dssp HHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHH---G------GG-G-HHHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSS
T ss_pred HHhhcccccccccccHHHHHHHHHHHHHHHHC---c------Hh-h-HHHHHHHHHHHccCCC-hHHHHHHHHHHHHHHc
Confidence 11111111 0111223334444444322 0 01 1 1244566777777655 4589999999999976
Q ss_pred Cch---hHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhh-HHhhhchhHHHHHHHhcCCchhhHHHHHH
Q 000124 421 NIF---LSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIW-EAIGKREGIQLLISLLGLSSEQHQEYAVQ 496 (2138)
Q Consensus 421 n~~---~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~-~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~ 496 (2138)
+.. .... -...++.++..+.+.+..++..++.+|.+++...+... ..-.-...++.++..+.+. +.++..+++
T Consensus 396 ~~~~~~~~~~--~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~ 472 (876)
T 1qgr_A 396 GPEPSQLKPL--VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCW 472 (876)
T ss_dssp SSCHHHHHHH--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHH
T ss_pred CCCHHHHHHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHH
Confidence 532 2221 23467888899998899999999999999987633210 0001135677888888774 889999999
Q ss_pred HHHHHhhcCch-------------hHHHHHhcCCchHHHHHhhhC---CHHHHHHHHHHHHHH-----------------
Q 000124 497 LIAILTEQVDD-------------SKWAITAAGGIPPLVQLLEAG---SQKAREVAAHVLWIL----------------- 543 (2138)
Q Consensus 497 aL~nLa~~s~e-------------~r~~I~~aGaIp~LV~LLks~---d~~vre~Aa~aL~nL----------------- 543 (2138)
+|.+++....+ ......-...++.|...+... +..++..+..++..+
T Consensus 473 al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~ 552 (876)
T 1qgr_A 473 AFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTL 552 (876)
T ss_dssp HHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHH
Confidence 99999863210 000000112344444444332 223444444444333
Q ss_pred ---------------------------------------hcCCh--hHHHHHHHcCCcchhhhccccCC--hhHHHHHHH
Q 000124 544 ---------------------------------------CCHSE--DIRACVESAGAVPAFLWLLKSGG--PKGQDASAM 580 (2138)
Q Consensus 544 ---------------------------------------s~~sd--~~r~~I~e~GaI~aLv~LLkS~~--~evq~~Aa~ 580 (2138)
...-. ..... -...++.++.++++.. +.++..+..
T Consensus 553 ~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~l~~~l~~~l~~~~~~~~v~~~a~~ 630 (876)
T 1qgr_A 553 VIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQI--SDVVMASLLRMFQSTAGSGGVQEDALM 630 (876)
T ss_dssp HHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTT--HHHHHHHHHHHC-----CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHH--HHHHHHHHHHHHHhccCCCCccHHHHH
Confidence 22110 00000 0123455666676654 478999999
Q ss_pred HHHHHHHhhc-------hhhHHHHHHHhcCC-CcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcC--CC
Q 000124 581 ALTKLIRAAD-------SATINQLLALLLGD-SPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNS--SN 650 (2138)
Q Consensus 581 AL~nLs~~~e-------~~aI~~Li~LL~~~-d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks--~s 650 (2138)
++..++.... ...++.+...+.+. ++.++..+.++++.+....... +... -...++.++..+++ .+
T Consensus 631 ~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~--~~~i~~~l~~~l~~~~~~ 706 (876)
T 1qgr_A 631 AVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSN--IIPF--CDEVMQLLLENLGNENVH 706 (876)
T ss_dssp HHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGG--GHHH--HHHHHHHHHHHHTCTTSC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHh--hhhh--HHHHHHHHHHHhCCcccc
Confidence 9999886421 34567788888876 7888999999999887543211 1110 13457788888876 36
Q ss_pred HHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCC----H-------HHHHHHHHHHHHhcCCCCccc---ch
Q 000124 651 EENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNT----Q-------MVATQSARALGALSRPTKTKT---TN 716 (2138)
Q Consensus 651 ~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs----~-------~Vk~~AA~ALanLa~s~~~~d---~~ 716 (2138)
.++|..+..++.+++....+..... -..+++.+.+.+.... + .+|..+..++..+........ ..
T Consensus 707 ~~~~~~~~~~l~~i~~~~g~~~~~~-l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~ 785 (876)
T 1qgr_A 707 RSVKPQILSVFGDIALAIGGEFKKY-LEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHP 785 (876)
T ss_dssp GGGHHHHHHHHHHHHHHHGGGGGGG-HHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCG
T ss_pred HHhhHHHHHHHHHHHHHhchhHHHH-HHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccc
Confidence 7899999999999976322221111 1345566666665432 2 677778888876654111000 00
Q ss_pred -hhhHHhcCChhhHHhh----hhcC--CHHHHHHHHHHHHHhhCC--c-hHHHHHHhcCcHHHHHH-HHhCCCHHHHHHH
Q 000124 717 -KMSYIAEGDVKPLIKL----AKTS--SIDAAETAVAALANLLSD--P-DIAAEVLLEDVVSALTR-VLAEGTSEGKKNA 785 (2138)
Q Consensus 717 -r~~I~~~G~V~~Lv~L----L~s~--s~~Vr~eAl~ALaNLa~~--~-e~r~~Ii~~g~L~~LV~-LL~~~~~~Vr~~A 785 (2138)
...+ ...++.++.. ..+. +..+|..|+.+|+.|+.. . ... .......+++++. .+.+.++.+|..|
T Consensus 786 ~~~~~--~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~-~~~~~~~i~~ll~~~l~~~~~~~r~~a 862 (876)
T 1qgr_A 786 DVMLV--QPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLK-LVEARPMIHELLTEGRRSKTNKAKTLA 862 (876)
T ss_dssp GGGGS--GGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHH-HHHTSHHHHHHHHHHHHCSCHHHHHHH
T ss_pred hHHHH--HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHH-HHHhcHHHHHHHHHHhhcCCHhHHHHH
Confidence 0000 1123333333 3555 789999999999999752 2 222 2334567888888 8999999999999
Q ss_pred HHHHHHhhh
Q 000124 786 SRALHQLLK 794 (2138)
Q Consensus 786 a~AL~nL~~ 794 (2138)
+++++++..
T Consensus 863 ~~a~~~~~~ 871 (876)
T 1qgr_A 863 RWATKELRK 871 (876)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999886
No 48
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1
Probab=99.65 E-value=1.9e-16 Score=165.44 Aligned_cols=117 Identities=21% Similarity=0.332 Sum_probs=100.1
Q ss_pred CceEEEEEecccccc-----cccCCCCceEEEEecCC--CCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecC
Q 000124 2009 PGCLTVTIKRGNNLK-----QTMGTTNAFCRLTIGNG--PPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKN 2081 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~~-----~~~~~~~~~~~~~~~~~--~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~ 2081 (2138)
+|.|.|+|++|.||. +..|+.||||++.++.. ..+||+|+++++||+|||+|.|.+..+ ..+.|+|+||+++
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~~l~i~V~d~d 80 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPN-QENVLEITLMDAN 80 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTT-SCCEEEEEEEECC
T ss_pred CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCC-CCCEEEEEEEECC
Confidence 689999999999996 45699999999999543 445799999999999999999999765 6899999999999
Q ss_pred CCCCcccceEEEEecceeecceecceeecCCCCCCCCCccceEEEEEecC
Q 000124 2082 TFGKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIWSN 2131 (2138)
Q Consensus 2082 ~~~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~ 2131 (2138)
.++.+.+|++.|.|.++...++...+|+|.+. ..+.+++.+++++
T Consensus 81 ~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~-----~~g~i~~~le~~~ 125 (126)
T 1rlw_A 81 YVMDETLGTATFTVSSMKVGEKKEVPFIFNQV-----TEMVLEMSLEVAS 125 (126)
T ss_dssp SSCCEEEEEEEEEGGGSCTTCEEEEEEEETTT-----EEEEEEEEEECCC
T ss_pred CCCCceeEEEEEEHHHccCCCcEEEEEEcCCC-----ceEEEEEEEEeCC
Confidence 99999999999999999888889999999875 3344446666553
No 49
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.61 E-value=1.5e-14 Score=173.37 Aligned_cols=202 Identities=17% Similarity=0.170 Sum_probs=175.3
Q ss_pred hhHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHH-HHhcCCHHHHHHH
Q 000124 36 STMSTVAKFLEQLHAN----------MSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFIS-ILRSGTPLAKVNV 104 (2138)
Q Consensus 36 ~~~~~V~qlLe~L~~~----------s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~-LLks~~~evr~~A 104 (2138)
.-...+...++.+.+. +.+.+.|..|+..|..++...++++.+ .+ .||+|.|+. +|++++++++..|
T Consensus 25 d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~-~~-~G~l~~Lv~~lL~s~~~~vr~~A 102 (296)
T 1xqr_A 25 GEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADF-CQ-LSGMHLLVGRYLEAGAAGLRWRA 102 (296)
T ss_dssp HHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHH-HH-TTHHHHHHHTTTTCSSHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHH-HH-cCCHHHHHHHHHcCCCHHHHHHH
Confidence 3455677777777764 334567899999999999987666555 44 799999999 9999999999999
Q ss_pred HHHHHHhccC-chhHHHHHhcCChHHHHHhhcc-CCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCC
Q 000124 105 AATLSVLCKD-EDLRLKVLLGGCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNP 182 (2138)
Q Consensus 105 a~~L~~Ls~~-e~~r~~v~~~G~Ip~Lv~LL~s-ed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s 182 (2138)
+.+|++++.+ +..+..++..|++++|+++|.+ .+..+++.|+++|.+++.+ ...+.+.+.+.|++|.|+.+|.+
T Consensus 103 a~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~----~~~~~~~~~~~ggi~~L~~lL~~ 178 (296)
T 1xqr_A 103 AQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVRE----QEAGLLQFLRLDGFSVLMRAMQQ 178 (296)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTT----CHHHHHHHHHTTHHHHHHHHHHS
T ss_pred HHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC----CcHHHHHHHHCCCHHHHHHHHcC
Confidence 9999999865 5688889999999999999997 4899999999999999973 45567889999999999999986
Q ss_pred CCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhh
Q 000124 183 KNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLA 246 (2138)
Q Consensus 183 ~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~ 246 (2138)
++ ..++..|+++|.+++.+++.....+.+.|+++.|+.+|.+++..+++.++.+|.+|...
T Consensus 179 ~d---~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 179 QV---QKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp SC---HHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred CC---HHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 53 67999999999999998877888999999999999999999999999999999999954
No 50
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}
Probab=99.61 E-value=4.5e-16 Score=169.87 Aligned_cols=115 Identities=16% Similarity=0.261 Sum_probs=97.2
Q ss_pred hcCCceEEEEEecccccc--cc----------cCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeE
Q 000124 2006 HCLPGCLTVTIKRGNNLK--QT----------MGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKL 2073 (2138)
Q Consensus 2006 ~~~~g~l~v~v~~~~~~~--~~----------~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l 2073 (2138)
.-+.|.|.|+|.+|.||. +. .|..||||++.+++...+|||++++++||+|||+|+|.+.+ ++.|
T Consensus 25 ~~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~---~~~L 101 (157)
T 2fk9_A 25 MKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD---GGHL 101 (157)
T ss_dssp CCEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE---ECEE
T ss_pred ccCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCC---CCEE
Confidence 356799999999999994 31 25689999999944333579999999999999999999865 4799
Q ss_pred EEEEeecCCCCC-cccceEEEEecceeec----ceecceeecCCCCCCCCCccceEEEEEec
Q 000124 2074 HIICKSKNTFGK-STLGKVTIQIDKVVTE----GVYSGLFNLNHDNNKDSSSRTLEIEIIWS 2130 (2138)
Q Consensus 2074 ~~~~~~~~~~~k-~~~g~~~~~~~~v~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~w~ 2130 (2138)
.|+||+++.||+ +.+|+|.|.|.++..+ +.+..+|+|.+ .|+++ ++++|+
T Consensus 102 ~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~----~G~i~---l~l~~~ 156 (157)
T 2fk9_A 102 ELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP----EGKVF---VVITLT 156 (157)
T ss_dssp EEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS----SCEEE---EEEEEC
T ss_pred EEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC----CcEEE---EEEEEE
Confidence 999999999985 5999999999999977 78999999976 35555 889986
No 51
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.59 E-value=1.1e-14 Score=174.71 Aligned_cols=182 Identities=18% Similarity=0.179 Sum_probs=169.3
Q ss_pred HHHHHHHHHHHhhcCchhHHHHhhhchHHHHHH-HHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcC
Q 000124 407 VQERVLEAMASLYGNIFLSQWVSHAEAKKVLIG-LITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGL 485 (2138)
Q Consensus 407 vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~-LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s 485 (2138)
-+..++..|..+..+.++...+...|+++.++. ++.+++++++..|+.+|++++.+++..+..+.+.|++++|++++++
T Consensus 56 ~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~ 135 (296)
T 1xqr_A 56 EREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDR 135 (296)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHcc
Confidence 677888889999998888888999999999999 9999999999999999999999988999999999999999999985
Q ss_pred -CchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhh
Q 000124 486 -SSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFL 564 (2138)
Q Consensus 486 -~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv 564 (2138)
.+..+++.|+++|+|++.+++.....+.+.|+++.|+.+|++++..++..|+++|.+|+.++++.+..+.+.|+++.|+
T Consensus 136 ~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv 215 (296)
T 1xqr_A 136 DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLV 215 (296)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHH
Confidence 4788999999999999987777777888899999999999999999999999999999987788889999999999999
Q ss_pred hccccCChhHHHHHHHHHHHHHHh
Q 000124 565 WLLKSGGPKGQDASAMALTKLIRA 588 (2138)
Q Consensus 565 ~LLkS~~~evq~~Aa~AL~nLs~~ 588 (2138)
.+++++++.+++.++.+|+++...
T Consensus 216 ~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 216 ALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHcCCChhHHHHHHHHHHHHHhC
Confidence 999999999999999999999854
No 52
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=99.59 E-value=1.7e-15 Score=160.05 Aligned_cols=117 Identities=21% Similarity=0.366 Sum_probs=98.8
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCC-C
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFG-K 2085 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~-k 2085 (2138)
.|.|.|+|++|.|| .+..|..||||++.+ .++++||+|+++++||.|||+|.|.+.++ ++.|+|+|||++.+| .
T Consensus 12 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~-~~~~~kT~~~~~t~nP~wne~f~f~~~~~--~~~l~i~V~d~d~~~~~ 88 (133)
T 2ep6_A 12 VGILQVKVLKAADLLAADFSGKSDPFCLLEL-GNDRLQTHTVYKNLNPEWNKVFTFPIKDI--HDVLEVTVFDEDGDKPP 88 (133)
T ss_dssp SEEEEEEEEEEESCCCSSSSSCCCEEEEEEE-TTEEEECCCCSSCSSCCCCEEEEEEESCT--TCEEEEEEEEEETTEEE
T ss_pred ceEEEEEEEeeECCCCCCCCCCcCeEEEEEE-CCEEEEeeeecCCCCCccccEEEEEecCC--CCEEEEEEEECCCCCCC
Confidence 58999999999999 455689999999999 56677899999999999999999999864 689999999999996 5
Q ss_pred cccceEEEEecceeecceecceeecCCCCCCCCCccceEEEEEec
Q 000124 2086 STLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIWS 2130 (2138)
Q Consensus 2086 ~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~ 2130 (2138)
+.+|++.|.|.++.. |. ..+|+|.+...++...+.+.++++|.
T Consensus 89 ~~lG~~~i~l~~l~~-~~-~~w~~L~~~~~~~~~~G~i~l~i~~~ 131 (133)
T 2ep6_A 89 DFLGKVAIPLLSIRD-GQ-PNCYVLKNKDLEQAFKGVIYLEMDLI 131 (133)
T ss_dssp EECCBCEEEGGGCCS-SC-CEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred CeeEEEEEEHHHccC-CC-ceEEEeecCCCCCccceEEEEEEEEE
Confidence 789999999999854 43 47899987644444667777888774
No 53
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2
Probab=99.58 E-value=1.2e-15 Score=161.51 Aligned_cols=121 Identities=18% Similarity=0.331 Sum_probs=102.4
Q ss_pred CCceEEEEEeccccc--ccccCCCCceEEEEecCCCCccccccc-cCCCCCccccceeeecCCCCCCeEEEEEeecCCCC
Q 000124 2008 LPGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVS-HSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFG 2084 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~-~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~ 2084 (2138)
-.|.|.|+|++|.|| .+..|..||||++.+ .+.++||++++ +++||.|||+|.|.+.+ ..+.|+|+||+++.++
T Consensus 8 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~-~~~~~kT~~~~~~~~nP~Wne~f~f~v~~--~~~~l~~~V~d~~~~~ 84 (136)
T 1wfj_A 8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTC-RTQDQKSNVAEGMGTTPEWNETFIFTVSE--GTTELKAKIFDKDVGT 84 (136)
T ss_dssp CEEEEEEEEEEEEECSSCCSSCSSCCCEEEES-SSCEEECCCCTTCCSSCEEEEEEEEEEES--SCCEEEEEECCSSSCT
T ss_pred CcEEEEEEEEeccCCCCcccCCCcCceEEEEE-CCccceeEeccCCCCCCccCcEEEEEECC--CCCEEEEEEEECCCCC
Confidence 458999999999999 456689999999999 56677899999 99999999999999986 5789999999999997
Q ss_pred C-cccceEEEEecceeecce-ecceeecCCCCCCCCCccceEEEEEecCCCC
Q 000124 2085 K-STLGKVTIQIDKVVTEGV-YSGLFNLNHDNNKDSSSRTLEIEIIWSNRIS 2134 (2138)
Q Consensus 2085 k-~~~g~~~~~~~~v~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~~ 2134 (2138)
+ +.+|++.|.|.++...|. ...+|+|... ....+.+.+.++|.+...
T Consensus 85 ~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~---~~~~G~i~l~l~~~p~~~ 133 (136)
T 1wfj_A 85 EDDAVGEATIPLEPVFVEGSIPPTAYNVVKD---EEYKGEIWVALSFKPSGP 133 (136)
T ss_dssp TTCCSEEEEEESHHHHHHSEEEEEEEEEEET---TEEEEEEEEEEEEEECCS
T ss_pred CCceEEEEEEEHHHhccCCCCCcEEEEeecC---CccCEEEEEEEEEEeCCC
Confidence 4 789999999999987775 4567999832 234566779999988643
No 54
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A
Probab=99.57 E-value=4.4e-15 Score=160.52 Aligned_cols=123 Identities=20% Similarity=0.339 Sum_probs=98.2
Q ss_pred cCCceEEEEEeccccc--ccccCCCCceEEEEecCC-----CCccccccccCCCCCccccceeeecCCCCCCeEEEEEee
Q 000124 2007 CLPGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNG-----PPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKS 2079 (2138)
Q Consensus 2007 ~~~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~-----~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~ 2079 (2138)
--.|.|.|+|++|.|| .+..|..||||++.++.. ..+||+|+++++||.|||+|.|.+.. ..+.|+|+|||
T Consensus 17 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~--~~~~l~~~V~d 94 (153)
T 3b7y_A 17 ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHP--QQHRLLFEVFD 94 (153)
T ss_dssp TTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECT--TTCEEEEEEEE
T ss_pred CCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecC--CCCEEEEEEEE
Confidence 4578999999999999 455689999999999632 24479999999999999999998874 36899999999
Q ss_pred cCCCCC-cccceEEEEecceeeccee------cceeecCCCCCCCCCccceEEEEEecC
Q 000124 2080 KNTFGK-STLGKVTIQIDKVVTEGVY------SGLFNLNHDNNKDSSSRTLEIEIIWSN 2131 (2138)
Q Consensus 2080 ~~~~~k-~~~g~~~~~~~~v~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~w~~ 2131 (2138)
++.+|+ +.+|++.|.|.++...+.- ..+|.|.+.+.++...+.+.|.+.|.|
T Consensus 95 ~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~P 153 (153)
T 3b7y_A 95 ENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP 153 (153)
T ss_dssp CCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred CCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEeC
Confidence 999975 5899999999999886642 478999876444555678889999865
No 55
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*
Probab=99.56 E-value=7.9e-15 Score=157.71 Aligned_cols=117 Identities=16% Similarity=0.406 Sum_probs=100.0
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCC---
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTF--- 2083 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~--- 2083 (2138)
.|.|.|+|++|.|| .+..|..||||++.+ .+..++|+++++++||.|||+|.|.+..+ ++.|+|+||+++.+
T Consensus 16 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~-~~~~~kT~~~~~t~nP~Wne~f~f~v~~~--~~~l~~~v~d~d~~~~~ 92 (148)
T 3kwu_A 16 SAKISITVVCAQGLQAKDKTGSSDPYVTVQV-GKTKKRTKTIYGNLNPVWEENFHFECHNS--SDRIKVRVLDEDDDIKS 92 (148)
T ss_dssp CEEEEEEEEEEESCCCCSTTSCCCEEEEEEE-TTEEEECCCCCSCSSCEEEEEEEEEECST--TCEEEEEEEECCCSHHH
T ss_pred ccEEEEEEEeeeCCCCCCCCCCcCeEEEEEE-CCEEEECCccCCCCCCCcccEEEEEecCC--CCEEEEEEEECCCCccc
Confidence 59999999999999 556799999999999 56777899999999999999999988765 58999999999985
Q ss_pred ---------CCcccceEEEEecceeecceecceeecCCCCCCCCCccceEEEEEec
Q 000124 2084 ---------GKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIWS 2130 (2138)
Q Consensus 2084 ---------~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~ 2130 (2138)
..+.+|++.|.|.++ .+....+|+|.+.+.++...+.+.+++...
T Consensus 93 ~~~~~~~~~~~~~lG~~~i~l~~l--~~~~~~w~~L~~~~~~~~~~G~i~l~l~~e 146 (148)
T 3kwu_A 93 RVKQRFKRESDDFLGQTIIEVRTL--SGEMDVWYNLDKRTDKSAVSGAIRLHISVE 146 (148)
T ss_dssp HHHTTTSSCSSEEEEEEEEEGGGC--CSEEEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred cccccccCCCCccEEEEEEEHHHC--cCCCCEEEEcccCCCCCCCceEEEEEEEEE
Confidence 678999999999998 567789999997645555566666777654
No 56
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}
Probab=99.55 E-value=6.9e-15 Score=163.13 Aligned_cols=122 Identities=20% Similarity=0.376 Sum_probs=96.4
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEecCCC-----CccccccccCCCCCccccceeeecCCCCCCeEEEEEeecC
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGP-----PRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKN 2081 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~-----~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~ 2081 (2138)
.|.|.|+|++|.|| .+..|..||||++.++... .+||+|+++++||.|||+|.|.+. |..+.|+|+||+++
T Consensus 7 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~--~~~~~L~~~V~d~d 84 (176)
T 3m7f_B 7 TRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVL--PQRHRILFEVFDEN 84 (176)
T ss_dssp CEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEEC--TTTCEEEEEEEECC
T ss_pred cEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEc--CCCCEEEEEEEECC
Confidence 58999999999999 5667999999999996432 347999999999999999999886 45689999999999
Q ss_pred CCCC-cccceEEEEecceeecceec------ceeecCCCCCCCCCccceEEEEEecCC
Q 000124 2082 TFGK-STLGKVTIQIDKVVTEGVYS------GLFNLNHDNNKDSSSRTLEIEIIWSNR 2132 (2138)
Q Consensus 2082 ~~~k-~~~g~~~~~~~~v~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~w~~~ 2132 (2138)
.+++ +.+|+|.|.|.++...+... .+|.|.+...+....+.+.+.+.|.|.
T Consensus 85 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 85 RLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK 142 (176)
T ss_dssp ----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred CCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence 9976 78999999999999876542 689999874555456888899999886
No 57
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1
Probab=99.54 E-value=3.1e-15 Score=158.92 Aligned_cols=115 Identities=17% Similarity=0.272 Sum_probs=95.1
Q ss_pred cCCceEEEEEecccccc--cccCC-----------CCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeE
Q 000124 2007 CLPGCLTVTIKRGNNLK--QTMGT-----------TNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKL 2073 (2138)
Q Consensus 2007 ~~~g~l~v~v~~~~~~~--~~~~~-----------~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l 2073 (2138)
.+.|.|.|+|++|.||. +..|+ .||||++.+++.+.++|+++++++||.|||+|+|.+.++ +.|
T Consensus 3 ~~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~---~~L 79 (136)
T 1gmi_A 3 VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG---RKI 79 (136)
T ss_dssp CEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE---CEE
T ss_pred ccceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC---CEE
Confidence 45799999999999994 33333 899999999544335799999999999999999999865 899
Q ss_pred EEEEeecCCCCC-cccceEEEEecceeec--ceecceeecCCCCCCCCCccceEEEEEecC
Q 000124 2074 HIICKSKNTFGK-STLGKVTIQIDKVVTE--GVYSGLFNLNHDNNKDSSSRTLEIEIIWSN 2131 (2138)
Q Consensus 2074 ~~~~~~~~~~~k-~~~g~~~~~~~~v~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~ 2131 (2138)
+|+||+++.+|+ +.+|++.|.+.++..+ +.+..+|.|.+. |+ +.+.+.|.+
T Consensus 80 ~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~~----G~---i~l~l~~~~ 133 (136)
T 1gmi_A 80 ELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEPE----GK---VYVIIDLSG 133 (136)
T ss_dssp EEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBSS----CE---EEEEEEEEE
T ss_pred EEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcCCC----eE---EEEEEEEEe
Confidence 999999999975 5899999999999985 356888988764 44 448888865
No 58
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.54 E-value=1.1e-14 Score=154.99 Aligned_cols=108 Identities=18% Similarity=0.324 Sum_probs=92.1
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEec----CCCCccccccccCCCCCccccceeeecC--CCCCCeEEEEEeec
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIG----NGPPRQTKVVSHSISPEWKEGFTWAFDV--PPKGQKLHIICKSK 2080 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~t~~~~~~~~p~w~~~f~~~~~~--~p~~~~l~~~~~~~ 2080 (2138)
.|.|.|+|++|.|| .+..|..||||++.+. .+..+||+|+++++||+|||+|.|.+-. ......|+|+||++
T Consensus 20 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~ 99 (141)
T 1v27_A 20 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQ 99 (141)
T ss_dssp TTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEB
T ss_pred CCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEEC
Confidence 58999999999999 4566889999999993 3455679999999999999999998421 12568999999999
Q ss_pred CCCC---CcccceEEEEecceeecceecceeecCCCCCCCCC
Q 000124 2081 NTFG---KSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSS 2119 (2138)
Q Consensus 2081 ~~~~---k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~ 2119 (2138)
+.++ .+.+|++.|.|.++..++ ...+|+|.+. +.|+
T Consensus 100 d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~--~~g~ 138 (141)
T 1v27_A 100 ARVREEESEFLGEILIELETALLDD-EPHWYKLQTH--DSGP 138 (141)
T ss_dssp CSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCC--SSCC
T ss_pred CCCcCCCCceEEEEEEEccccCCCC-CCceEECccc--ccCC
Confidence 9998 589999999999998876 8899999998 5554
No 59
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.53 E-value=1.2e-11 Score=161.85 Aligned_cols=363 Identities=13% Similarity=0.123 Sum_probs=246.3
Q ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHhhcCch-hHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHH
Q 000124 391 IEDILVMLLKPHDNKLVQERVLEAMASLYGNIF-LSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEA 469 (2138)
Q Consensus 391 Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~-~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~ 469 (2138)
+.+.|..++.+.+. .++..|+.+|+.++.+.. ....-...+.+..|+..+...++-.|.....++..++..++...
T Consensus 161 ~~~~l~~lL~d~d~-~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~-- 237 (591)
T 2vgl_B 161 FLDSLRDLIADSNP-MVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA-- 237 (591)
T ss_dssp HHHHHHHTTSCSCH-HHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH--
T ss_pred HHHHHHHHhCCCCh-hHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH--
Confidence 34556666665544 377777777777754421 10000011335566666667788888888888888875533221
Q ss_pred hhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhc---CchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcC
Q 000124 470 IGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQ---VDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCH 546 (2138)
Q Consensus 470 I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~---s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~ 546 (2138)
...++.+..++++.++.++..|+.++.++... +++.-..+ -....++|+.++ ++++++|..++..|..+...
T Consensus 238 ---~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~-~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~ 312 (591)
T 2vgl_B 238 ---QSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNML-LKKLAPPLVTLL-SGEPEVQYVALRNINLIVQK 312 (591)
T ss_dssp ---HHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHH-HHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHH-HHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHh
Confidence 34577888889999999999999999998742 22222222 234567788766 47999999999999999763
Q ss_pred ChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc-hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcc
Q 000124 547 SEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQ 625 (2138)
Q Consensus 547 sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e-~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~ 625 (2138)
... .+ ...+..++.+ .+++..++..+...|.++++..+ ...++.|...+++.+.+++..+.++++.++...+.
T Consensus 313 ~p~---~~--~~~~~~~~~~-~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~ 386 (591)
T 2vgl_B 313 RPE---IL--KQEIKVFFVK-YNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ 386 (591)
T ss_dssp CCS---TT--TTCTTTTSCC-TTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH
T ss_pred ChH---HH--HHHHHhheec-cCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh
Confidence 221 00 1122222222 24448899999999999986543 34678888889898999999999999988754221
Q ss_pred hHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhcc-CCHHHHHHHHHHHH
Q 000124 626 EDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS-NTQMVATQSARALG 704 (2138)
Q Consensus 626 ~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~d-gs~~Vk~~AA~ALa 704 (2138)
. ....++.|+.+++...+.++..+..++.++....++. ...++..|.+.+.+ ..+.++..++|+|+
T Consensus 387 --~------~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~-----~~~~v~~L~~~l~~~~~~~~~~~~~wilG 453 (591)
T 2vgl_B 387 --S------AERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK-----YESIIATLCENLDSLDEPDARAAMIWIVG 453 (591)
T ss_dssp --H------HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS-----CCTTHHHHHHTTTTCCSHHHHHHHHHHHH
T ss_pred --H------HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcch-----HHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 1 1236899999999999999988899999997755543 35678889998875 56789999999999
Q ss_pred HhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-CchHHHHHHhcCcHHHHHHHH-hC-CCHHH
Q 000124 705 ALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTRVL-AE-GTSEG 781 (2138)
Q Consensus 705 nLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~-~~e~r~~Ii~~g~L~~LV~LL-~~-~~~~V 781 (2138)
..+...+. ....++.+++-+...+..+|..++.++..+.. .|+.. ...+..+.+.. .+ .++++
T Consensus 454 ey~~~~~~---------~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~-----~~~i~~ll~~~~~d~~d~ev 519 (591)
T 2vgl_B 454 EYAERIDN---------ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSET-----QELVQQVLSLATQDSDNPDL 519 (591)
T ss_dssp TTCTTCTT---------HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTT-----HHHHHHHHHHHHTTCCCHHH
T ss_pred cccccccC---------HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHH-----HHHHHHHHHHhhhcCCChHH
Confidence 99763322 11245556655666789999999999999976 34321 12344455543 44 68899
Q ss_pred HHHHHHHHHHhhh
Q 000124 782 KKNASRALHQLLK 794 (2138)
Q Consensus 782 r~~Aa~AL~nL~~ 794 (2138)
|+.|...+.-+..
T Consensus 520 rdRA~~y~~ll~~ 532 (591)
T 2vgl_B 520 RDRGYIYWRLLST 532 (591)
T ss_dssp HHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHCc
Confidence 9999987755533
No 60
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A
Probab=99.53 E-value=9.3e-15 Score=154.23 Aligned_cols=118 Identities=15% Similarity=0.241 Sum_probs=93.7
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEecC-CCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCC
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGN-GPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGK 2085 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k 2085 (2138)
+..|.|+|++|.|| .+..|..||||++.++. +..+||+|+++++||+|||+|.|.+..+ +.|+|+||+++.+|+
T Consensus 4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~---~~l~~~v~d~d~~~~ 80 (132)
T 3pyc_A 4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT---DSITISVWNHKKIHK 80 (132)
T ss_dssp EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETT---CCEEEEEEEGGGTTS
T ss_pred eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCC---CEEEEEEEECCCCCC
Confidence 45699999999999 56678999999999954 3555799999999999999999999754 569999999999986
Q ss_pred ----cccceEEEEecceeec-ceecceeecCCCCC--CCCCccceEEEEEe
Q 000124 2086 ----STLGKVTIQIDKVVTE-GVYSGLFNLNHDNN--KDSSSRTLEIEIIW 2129 (2138)
Q Consensus 2086 ----~~~g~~~~~~~~v~~~-~~~~~~~~l~~~~~--~~~~~~~~~~~~~w 2129 (2138)
+.+|+|.|.+.++-.. ..-...|+|...+. +....+.+.|+|.+
T Consensus 81 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 81 KQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQT 131 (132)
T ss_dssp STTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred CCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence 8999999998887332 22235688877521 12236777788876
No 61
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A {Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A* 4dnl_A* 2uzp_A*
Probab=99.52 E-value=3.4e-15 Score=158.04 Aligned_cols=112 Identities=19% Similarity=0.409 Sum_probs=96.9
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEec----CCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCC
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIG----NGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNT 2082 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~ 2082 (2138)
.|.|.|+|++|.|| .+..|..||||++.+. ++..+||+|+++++||.|||+|.|.+..+..+..|+|+||+++.
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~l~i~v~d~d~ 94 (137)
T 3rdl_A 15 DEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDR 94 (137)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEECCTTCCCCEECCCCCSCSSCEEEEEEEEECCGGGGGCEEEEEEEECCS
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCeeEEEEEEcCCCCCeeecCceEcCCCCCCcccEEEEEcCchhcCCEEEEEEEECCC
Confidence 59999999999999 4567899999999995 34455799999999999999999999766567799999999999
Q ss_pred CCC-cccceEEEEecceeecceecceeecCCCCCCCCCccce
Q 000124 2083 FGK-STLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTL 2123 (2138)
Q Consensus 2083 ~~k-~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~ 2123 (2138)
+|+ +.+|.|.|.|.++...+ ...+|.|.+. +.|+.+++
T Consensus 95 ~~~~~~iG~~~i~l~~l~~~~-~~~W~~L~~~--~~g~~~~~ 133 (137)
T 3rdl_A 95 TTRNDFMGSLSFGVSELMKMP-ASGWYKLLNQ--EEGEYYNV 133 (137)
T ss_dssp SSCCEEEEEEEEEHHHHHHSC-EEEEEECBCH--HHHTTCCC
T ss_pred CCCCceEEEEEEeHHHhccCc-cCceEECcCc--cccccccC
Confidence 975 67999999999997766 8999999988 67776654
No 62
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.52 E-value=4.9e-15 Score=159.72 Aligned_cols=111 Identities=19% Similarity=0.363 Sum_probs=95.5
Q ss_pred CCceEEEEEeccccc--ccccCCCCceEEEEecC----CCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecC
Q 000124 2008 LPGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGN----GPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKN 2081 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~ 2081 (2138)
.+|.|.|+|++|.|| .+..|..||||++.+.. ...+||+|+++++||.|||+|.|.+..+.....|+|+|||++
T Consensus 29 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d 108 (149)
T 1a25_A 29 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWD 108 (149)
T ss_dssp SSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECC
T ss_pred cCCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECC
Confidence 479999999999999 45568899999999964 345579999999999999999999876556789999999999
Q ss_pred CCCC-cccceEEEEecceeecceecceeecCCCCCCCCCcc
Q 000124 2082 TFGK-STLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSR 2121 (2138)
Q Consensus 2082 ~~~k-~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~ 2121 (2138)
.+++ +.+|+|.|.|.++... ....+|+|.+. ++|+.+
T Consensus 109 ~~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~~--~~g~~~ 146 (149)
T 1a25_A 109 LTSRNDFMGSLSFGISELQKA-GVDGWFKLLSQ--EEGEYF 146 (149)
T ss_dssp SSSCCEEEEEEEEEHHHHTTC-CEEEEEECBCH--HHHTTC
T ss_pred CCCCCCEEEEEEEEHHHhCcC-ccCCeEEccCC--CCCccc
Confidence 9975 5799999999998764 58889999988 666655
No 63
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0
Probab=99.52 E-value=7.8e-15 Score=159.07 Aligned_cols=115 Identities=16% Similarity=0.299 Sum_probs=95.9
Q ss_pred CCceEEEEEecccccccc-cCCCCceEEEEecC----CCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCC
Q 000124 2008 LPGCLTVTIKRGNNLKQT-MGTTNAFCRLTIGN----GPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNT 2082 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~ 2082 (2138)
-.|.|.|+|++|.||... .|..||||++.+.. ...+||+|+++++||.|||+|.|.+......+.|+|+||+++.
T Consensus 25 ~~~~L~V~v~~a~~L~~~d~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~ 104 (153)
T 3fbk_A 25 QDRVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRAS 104 (153)
T ss_dssp SSSEEEEEEEEEESCCCCSSSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEECCS
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeCCC
Confidence 368999999999999332 38899999999942 2344699999999999999999999655566789999999999
Q ss_pred CCC--cccceEEEEecceee-cceecceeecCCCCCCCCCccceE
Q 000124 2083 FGK--STLGKVTIQIDKVVT-EGVYSGLFNLNHDNNKDSSSRTLE 2124 (2138)
Q Consensus 2083 ~~k--~~~g~~~~~~~~v~~-~~~~~~~~~l~~~~~~~~~~~~~~ 2124 (2138)
+++ +.+|.|.|.|.++.. .+.+.++|.|.+. +.|+.+.+.
T Consensus 105 ~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~--~~g~~~~lk 147 (153)
T 3fbk_A 105 QSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGE--HLGRTKHLK 147 (153)
T ss_dssp SGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCT--TGGGTCCCB
T ss_pred CCCCCcEEEEEEEEHHHhcCCCCccccEEECCCh--hhcccccce
Confidence 875 799999999999985 7889999999998 667665443
No 64
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.51 E-value=3.1e-11 Score=154.72 Aligned_cols=460 Identities=14% Similarity=0.124 Sum_probs=315.8
Q ss_pred chhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcC--CHHHHHHHHHHHHHh-
Q 000124 35 ESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSG--TPLAKVNVAATLSVL- 111 (2138)
Q Consensus 35 ~~~~~~V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~--~~evr~~Aa~~L~~L- 111 (2138)
++...+|..+.+.+.. ++-.++|..|+..|..+++ .++..+.. +|++.|+..|+.. +.++...++.+|.++
T Consensus 17 qs~~etI~~L~~Rl~~-~tl~eDRR~Av~~Lk~~sk---~y~~~Vg~--~~l~~li~~L~~d~~D~e~v~~~LetL~~l~ 90 (651)
T 3grl_A 17 HTEAETIQKLCDRVAS-STLLDDRRNAVRALKSLSK---KYRLEVGI--QAMEHLIHVLQTDRSDSEIIGYALDTLYNII 90 (651)
T ss_dssp -CHHHHHHHHHHHHHH-CCSHHHHHHHHHHHHHTTT---TTTTHHHH--HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHhh-ccchhHHHHHHHHHHHHHH---HhHHHhhh--hhHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 4677888999999966 5778999999999999975 35666654 7999999999874 788889999999765
Q ss_pred ccCchh-----------------HHHH-HhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHc-Cc
Q 000124 112 CKDEDL-----------------RLKV-LLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTE-GV 172 (2138)
Q Consensus 112 s~~e~~-----------------r~~v-~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~Ivea-G~ 172 (2138)
+.+++. ...+ ...+.|+.|+.+|.+++..+|..+++.|..|+.+ +.+...+.+... ++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~---r~~~~Q~~Il~~p~g 167 (651)
T 3grl_A 91 SNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQ---LGPQVQQIILVSPMG 167 (651)
T ss_dssp CCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH---SHHHHHHHHHHSTTH
T ss_pred CCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhc---CcHHHHHHHHhCccc
Confidence 433221 1122 2348899999999999999999999999999984 344467778755 99
Q ss_pred HHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCH----HHHHHHHHHHHHHHhhcC
Q 000124 173 VPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNA----AAQSNAASLLARLMLAFG 248 (2138)
Q Consensus 173 Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~----evq~~A~~aL~nLs~~~~ 248 (2138)
|+.|+++|.++. ..++..++..|.+|+.++...++.+.-.|+++.|..++..+.. .+.+-|+.+|.+|...++
T Consensus 168 i~~Lv~lL~d~r---E~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~ 244 (651)
T 3grl_A 168 VSRLMDLLADSR---EVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNN 244 (651)
T ss_dssp HHHHHGGGGCSS---HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhCch---HHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCH
Confidence 999999998765 4689999999999999999998888889999999999987543 688999999999998888
Q ss_pred CCcchhhccchHHHHHHHhccCCCH-----hHHHH---HHHHHHHHhhc------CHHHHHHHHhcCCHHHHHHhhcCCc
Q 000124 249 DSIPTVIDSGAVKALVQLVGQNNDI-----SVRAS---AADALEALSSK------SIKAKKAVVAADGVPVLIGAIVAPS 314 (2138)
Q Consensus 249 e~r~~l~~~GaL~~LL~LL~s~sd~-----~vr~~---Aa~aL~nLs~~------s~e~Rk~i~e~ggL~~LI~LL~s~s 314 (2138)
.++..+.+.|+++.|..++..+.+. ....+ +..++.-+... +..+++.+.+.|+++.|++++..+.
T Consensus 245 sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~ 324 (651)
T 3grl_A 245 SNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATG 324 (651)
T ss_dssp HHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSS
T ss_pred HHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCC
Confidence 8889999999999999999743221 01122 34444444332 3467788999999999999988753
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHH
Q 000124 315 KECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDI 394 (2138)
Q Consensus 315 ~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~ 394 (2138)
. ...++..|+.+++.+..+-+..-..+.... -+... ....+...
T Consensus 325 ~-------p~~i~~~Al~tla~~irgN~~~Q~~fa~~~-------------------------vp~~~----~~p~li~l 368 (651)
T 3grl_A 325 V-------PADILTETINTVSEVIRGCQVNQDYFASVN-------------------------APSNP----PRPAIVVL 368 (651)
T ss_dssp C-------CHHHHHHHHHHHHHHHTTCHHHHHHHHHCE-------------------------ESSSS----CEEHHHHH
T ss_pred C-------CHHHHHHHHHHHHHHHhCCHHHHHHHhhcc-------------------------CCCCC----CcChHHHH
Confidence 1 112666677777776544333211111100 00000 01123345
Q ss_pred HHHHcCCCChhHHHHHHHHHHHHh-hcCchhHHHHhhh------c-------hHHHHHHHHccCCHHHHHHHHHHHHHhh
Q 000124 395 LVMLLKPHDNKLVQERVLEAMASL-YGNIFLSQWVSHA------E-------AKKVLIGLITMATADVREYLILSLTKLC 460 (2138)
Q Consensus 395 LV~LL~s~~~e~vr~~Aa~AL~~L-~~n~~~~~~L~e~------~-------gI~~LV~LL~sss~evq~~Aa~aL~~Ls 460 (2138)
|..++.+.....+|..++.++... +.|++.+..+... + .-..+..-+-+.++..-.-|+.+|.++-
T Consensus 369 L~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll 448 (651)
T 3grl_A 369 LMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHAL 448 (651)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHH
Confidence 556666666667888888888776 5676666555432 1 1123444444566665566778888888
Q ss_pred hccchhhHHhhh------c-----hhHHHHHHHhcC-CchhhHHHHHHHHHHHhhcCchhHHHHHhcC-CchHHHHHhhh
Q 000124 461 RREVGIWEAIGK------R-----EGIQLLISLLGL-SSEQHQEYAVQLIAILTEQVDDSKWAITAAG-GIPPLVQLLEA 527 (2138)
Q Consensus 461 ~~s~~~~~~I~e------~-----ggIp~LV~LL~s-~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aG-aIp~LV~LLks 527 (2138)
.+++..+..+.+ . -.++.+...+.. .++.++..=+..|+.....+++.-..+...| .++.|++.+..
T Consensus 449 ~~n~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~AV~dFL~~~s~l~~L~~~i~~ 528 (651)
T 3grl_A 449 QENATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAE 528 (651)
T ss_dssp TTCHHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHHHS
T ss_pred cCCHHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChHHHHHHHcCCchHHHHHHHHHh
Confidence 887777654432 1 124555555543 3445555555666666666666666666665 48888887743
Q ss_pred --C--CHHHHHHHHHHHHH
Q 000124 528 --G--SQKAREVAAHVLWI 542 (2138)
Q Consensus 528 --~--d~~vre~Aa~aL~n 542 (2138)
+ +.-++.-++..|+-
T Consensus 529 ~~~~~~~lvqGL~a~LLGi 547 (651)
T 3grl_A 529 NLGEEEQLVQGLCALLLGI 547 (651)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred ccCcchHHHHHHHHHHHHH
Confidence 2 23345555544443
No 65
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.6e-14 Score=154.19 Aligned_cols=111 Identities=22% Similarity=0.314 Sum_probs=92.9
Q ss_pred CCceEEEEEeccccc--ccccCCCCceEEEEecC--CCCccccccccCCCCCccccceeeecC--CCCCCeEEEEEeecC
Q 000124 2008 LPGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGN--GPPRQTKVVSHSISPEWKEGFTWAFDV--PPKGQKLHIICKSKN 2081 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~t~~~~~~~~p~w~~~f~~~~~~--~p~~~~l~~~~~~~~ 2081 (2138)
-.|.|.|+|++|.|| .+..|..||||++.+.. +..+||+|+++++||+|||+|.|.+-. -.....|+|+||+++
T Consensus 24 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d 103 (141)
T 2d8k_A 24 QESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYD 103 (141)
T ss_dssp SSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECC
T ss_pred CCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECC
Confidence 469999999999999 45568899999999953 234469999999999999999997421 114689999999999
Q ss_pred CCCC-cccceEEEEecceeecceecceeecCCCCCCCC
Q 000124 2082 TFGK-STLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDS 2118 (2138)
Q Consensus 2082 ~~~k-~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~ 2118 (2138)
.+++ +.+|+|.|.|.++...+....+|.|.+.+++.|
T Consensus 104 ~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~~~sG 141 (141)
T 2d8k_A 104 RFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSGPSSG 141 (141)
T ss_dssp SSSSCEEEEEEEEETTTSCTTSCEEEEECCEECCCCCC
T ss_pred CCCCCcEEEEEEEEhhhhcCCCCccEEEECcCCCCCCC
Confidence 9975 689999999999998888999999998844443
No 66
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.49 E-value=1.3e-11 Score=161.31 Aligned_cols=510 Identities=12% Similarity=0.103 Sum_probs=339.4
Q ss_pred cHHHHHHhhccCCHHHHHH-HHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHH
Q 000124 217 GVDIIVGLLSSDNAAAQSN-AASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKK 295 (2138)
Q Consensus 217 GI~~Lv~lL~s~s~evq~~-A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk 295 (2138)
-+..+-..|.+++...+.. ..++++.+..+.+ -..+...+++++. +++..+|..+-..+.+++..+++..
T Consensus 14 e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d-------~~~~~~~vi~l~~-s~~~~~Krl~yl~l~~~~~~~~e~~- 84 (591)
T 2vgl_B 14 EIFELKAELNNEKKEKRKEAVKKVIAAMTVGKD-------VSSLFPDVVNCMQ-TDNLELKKLVYLYLMNYAKSQPDMA- 84 (591)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCC-------CGGGHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHSHHHH-
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCC-------hHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcccCchHH-
Confidence 4666777788777655544 4566665553321 1335677888777 5677888888888888766433332
Q ss_pred HHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHh
Q 000124 296 AVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVF 375 (2138)
Q Consensus 296 ~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l 375 (2138)
.-.+..+.+-+.++++. ++..|+.+|+++.. +..
T Consensus 85 ----~l~~n~l~kdL~~~n~~---------ir~~AL~~L~~i~~--~~~------------------------------- 118 (591)
T 2vgl_B 85 ----IMAVNSFVKDCEDPNPL---------IRALAVRTMGCIRV--DKI------------------------------- 118 (591)
T ss_dssp ----HTTHHHHGGGSSSSSHH---------HHHHHHHHHHTCCS--GGG-------------------------------
T ss_pred ----HHHHHHHHHHcCCCCHH---------HHHHHHHHHHcCCh--HHH-------------------------------
Confidence 12344555555555533 55667777766642 000
Q ss_pred hcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcC-chhHHHHhhhchHHHHHHHHccCCHHHHHHHHH
Q 000124 376 EQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGN-IFLSQWVSHAEAKKVLIGLITMATADVREYLIL 454 (2138)
Q Consensus 376 ~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n-~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~ 454 (2138)
...+.+.+..++.+.++. +|..|+.++..++.. ++.. .+.+.++.+..++.+.++.++..|+.
T Consensus 119 ------------~~~l~~~l~~~L~d~~~~-VRk~A~~al~~i~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~A~~ 182 (591)
T 2vgl_B 119 ------------TEYLCEPLRKCLKDEDPY-VRKTAAVCVAKLHDINAQMV---EDQGFLDSLRDLIADSNPMVVANAVA 182 (591)
T ss_dssp ------------HHHHHHHHHHHSSCSCHH-HHHHHHHHHHHHHHSSCCCH---HHHHHHHHHHHTTSCSCHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHcCCCChH-HHHHHHHHHHHHHhhChhhc---ccccHHHHHHHHhCCCChhHHHHHHH
Confidence 112345677888877654 999999999999753 3322 22456788999999999999999999
Q ss_pred HHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHH
Q 000124 455 SLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKARE 534 (2138)
Q Consensus 455 aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre 534 (2138)
+|..++.++++........+.++.|+..+...++-.+...+.+|.+++..++... ...++.+..+|++.++.++.
T Consensus 183 aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ 257 (591)
T 2vgl_B 183 ALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSAVVL 257 (591)
T ss_dssp HHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTHHHH
T ss_pred HHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChHHHH
Confidence 9999998755331111123456777777777788888888888888775332221 23466677778888999999
Q ss_pred HHHHHHHHHhc----CChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhc--CCCcch
Q 000124 535 VAAHVLWILCC----HSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLL--GDSPSS 608 (2138)
Q Consensus 535 ~Aa~aL~nLs~----~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~--~~d~~V 608 (2138)
.|++++.++.. +.+..+..+ ....+.|+.++ ++++++|+.+..+|..+......-..+.+..++. +++..+
T Consensus 258 ea~~~i~~l~~~~~~~~~~~~~~~--~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~I 334 (591)
T 2vgl_B 258 SAVKVLMKFLELLPKDSDYYNMLL--KKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYV 334 (591)
T ss_dssp HHHHHHHHSCCSCCBTTBSHHHHH--HHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHH
T ss_pred HHHHHHHHHhhccCCCHHHHHHHH--HHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHH
Confidence 99999999863 223333321 34556777665 4789999999999999986522111111111111 334678
Q ss_pred HHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHh
Q 000124 609 KAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLL 688 (2138)
Q Consensus 609 ~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL 688 (2138)
+..+++.+..+.... .+. ..++.|..++++.+.+.|..+++++.+++...+... ...++.|+.++
T Consensus 335 r~~al~~L~~l~~~~----nv~------~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~-----~~~v~~Ll~ll 399 (591)
T 2vgl_B 335 KLEKLDIMIRLASQA----NIA------QVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSA-----ERCVSTLLDLI 399 (591)
T ss_dssp HHHHHHHHHHTCCSS----THH------HHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCChh----hHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHH-----HHHHHHHHHHH
Confidence 888887777654221 111 247778888888999999999999999997544322 34678999999
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhc-CCHHHHHHHHHHHHHhhCCchHHHHHHhcCcH
Q 000124 689 TSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT-SSIDAAETAVAALANLLSDPDIAAEVLLEDVV 767 (2138)
Q Consensus 689 ~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s-~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L 767 (2138)
++..+.++..+..++.++....+. . ...++..|...+.+ ..++++..++|+|+..+..-... ...+
T Consensus 400 ~~~~~~v~~e~i~~l~~ii~~~p~---~-----~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~~-----~~~l 466 (591)
T 2vgl_B 400 QTKVNYVVQEAIVVIRDIFRKYPN---K-----YESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNA-----DELL 466 (591)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHSCS---S-----CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTTH-----HHHH
T ss_pred cccchHHHHHHHHHHHHHHHHCcc---h-----HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccCH-----HHHH
Confidence 999999999999999998763332 2 24578889888875 67889999999999887532211 2334
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000124 768 SALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2138)
Q Consensus 768 ~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~ 841 (2138)
+.+++-+.+.++.+|..+..++.++....|.. ....+..++........+...+..|...++.+..
T Consensus 467 ~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~--------~~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll~~ 532 (591)
T 2vgl_B 467 ESFLEGFHDESTQVQLTLLTAIVKLFLKKPSE--------TQELVQQVLSLATQDSDNPDLRDRGYIYWRLLST 532 (591)
T ss_dssp HHHSTTCSSSCHHHHHHHHHHHHHHHTTCCST--------THHHHHHHHHHHHTTCCCHHHHHHHHHHHTTTTT
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHhcCchH--------HHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHCc
Confidence 44554445668999999999999999865421 0234455666553333455678888888777753
No 67
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.49 E-value=1.5e-14 Score=151.76 Aligned_cols=101 Identities=19% Similarity=0.338 Sum_probs=82.6
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEec----CCCCccccccccCCCCCccccceeeecC--CCCCCeEEEEEeec
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIG----NGPPRQTKVVSHSISPEWKEGFTWAFDV--PPKGQKLHIICKSK 2080 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~t~~~~~~~~p~w~~~f~~~~~~--~p~~~~l~~~~~~~ 2080 (2138)
.|.|.|+|++|.|| .+..|..||||++.+. ++..+||+|+++++||+|||+|.|.+-. .+.+..|+|+||++
T Consensus 17 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~ 96 (129)
T 2bwq_A 17 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQ 96 (129)
T ss_dssp TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEEC
Confidence 58999999999999 4556889999999993 3344579999999999999999998522 22578999999999
Q ss_pred CCCC---CcccceEEEEecceeecceecceeec
Q 000124 2081 NTFG---KSTLGKVTIQIDKVVTEGVYSGLFNL 2110 (2138)
Q Consensus 2081 ~~~~---k~~~g~~~~~~~~v~~~~~~~~~~~l 2110 (2138)
+.+| .+.+|++.|.|.++..++ ...+|+|
T Consensus 97 d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L 128 (129)
T 2bwq_A 97 ARVREEESEFLGEILIELETALLDD-EPHWYKL 128 (129)
T ss_dssp -------CEEEEEEEEEGGGCCCSS-CEEEEEC
T ss_pred CcCcCcCCceeEEEEEEccccCCCc-CCccEEC
Confidence 9998 688999999999998877 7888887
No 68
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}
Probab=99.49 E-value=2.2e-14 Score=152.20 Aligned_cols=108 Identities=14% Similarity=0.242 Sum_probs=91.0
Q ss_pred hcCCceEEEEEecccccc-cccCCCCceEEEEecC----CCCccccccccCCCCCccccceee-ecCC-CCCCeEEEEEe
Q 000124 2006 HCLPGCLTVTIKRGNNLK-QTMGTTNAFCRLTIGN----GPPRQTKVVSHSISPEWKEGFTWA-FDVP-PKGQKLHIICK 2078 (2138)
Q Consensus 2006 ~~~~g~l~v~v~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~t~~~~~~~~p~w~~~f~~~-~~~~-p~~~~l~~~~~ 2078 (2138)
+.-+|.|.|+|++|.||. +..|..||||++.+.. ...+||+|+++++||+|||+|.|. +... +....|.|+||
T Consensus 16 ~~~~~~L~V~V~~a~~L~~~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~ 95 (134)
T 2b3r_A 16 SYRNGTLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVL 95 (134)
T ss_dssp EEETTEEEEEEEEEECCCCTTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEE
T ss_pred eecCCEEEEEEEEeeCCCCCCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEE
Confidence 345899999999999994 4558899999999943 234479999999999999999998 5422 25679999999
Q ss_pred ecCCCCC-cccceEEEEecceeecceecceeecCCC
Q 000124 2079 SKNTFGK-STLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2079 ~~~~~~k-~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
+++.+|+ +.+|+|.|.|.++...+....+|.|.+.
T Consensus 96 d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~ 131 (134)
T 2b3r_A 96 SAESLRENFFLGGITLPLKDFNLSKETVKWYQLTAA 131 (134)
T ss_dssp ECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC-
T ss_pred ECCCCCCCcEEEEEEEEhhhccCCCCcceeEECCCc
Confidence 9999975 5799999999999888889999999876
No 69
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.47 E-value=5.8e-14 Score=149.69 Aligned_cols=105 Identities=16% Similarity=0.237 Sum_probs=89.7
Q ss_pred CCceEEEEEecccccccccCCCCceEEEEecC--C-CCccccccccCCCCCccccceeeecCCCC-CCeEEEEEeecCCC
Q 000124 2008 LPGCLTVTIKRGNNLKQTMGTTNAFCRLTIGN--G-PPRQTKVVSHSISPEWKEGFTWAFDVPPK-GQKLHIICKSKNTF 2083 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~t~~~~~~~~p~w~~~f~~~~~~~p~-~~~l~~~~~~~~~~ 2083 (2138)
-.|.|.|+|++|.+ .+..|..||||++.+.. + ..+||+|+++++||+|||+|.|.+..+-+ +..|+|+||+++.|
T Consensus 24 ~~~~L~V~v~~a~~-~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~~ 102 (138)
T 1wfm_A 24 QKAELFVTRLEAVT-SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRF 102 (138)
T ss_dssp TTTEEEEEEEEEEC-CCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSS
T ss_pred CCCEEEEEEEEEEc-CCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCCC
Confidence 47899999999997 46669999999999943 2 23469999999999999999999764433 57899999999999
Q ss_pred CC-cccceEEEEecceeecceecceeecCCC
Q 000124 2084 GK-STLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2084 ~k-~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
++ +.+|+|.|.|.++-.......+|.|.+.
T Consensus 103 ~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~ 133 (138)
T 1wfm_A 103 SRHSVAGELRLGLDGTSVPLGAAQWGELKTS 133 (138)
T ss_dssp CTTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred CCCcEEEEEEEEcccccCcccccceeeCcCC
Confidence 65 6899999999999777788899999887
No 70
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Probab=99.47 E-value=3.1e-14 Score=157.97 Aligned_cols=122 Identities=19% Similarity=0.257 Sum_probs=97.2
Q ss_pred hhcCCceEEEEEecccccc--cccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCC
Q 000124 2005 LHCLPGCLTVTIKRGNNLK--QTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNT 2082 (2138)
Q Consensus 2005 ~~~~~g~l~v~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~ 2082 (2138)
..|..|.|.|+|++|.||. +..++.||||++.+ .|+.+||+|+++++||+|||+|+|.++ | .+.|+|+|||++.
T Consensus 31 ~~~~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~-~~~~~kT~v~~~tlnP~Wne~f~f~v~--~-~~~L~~~V~D~d~ 106 (173)
T 2nq3_A 31 SLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTV-DGQSKKTEKCNNTNSPKWKQPLTVIVT--P-VSKLHFRVWSHQT 106 (173)
T ss_dssp CCSCCEEEEEEEEEEEECCCC--CCCCCEEEEEEE-TTEEEECCCCSSCSSCEEEEEEEEEEC--T-TCEEEEEEEECCS
T ss_pred ccCCceEEEEEEEEeECCCCcccCCCCCeEEEEEE-CCEEeEccccCCCCCCeECCEEEEEeC--C-CCEEEEEEEECCC
Confidence 4578899999999999996 33466999999999 557778999999999999999999985 3 8999999999999
Q ss_pred CCCc-ccceEEEEecceeec--ce---ecceeecCCCCCCCCCccceEEEEEec
Q 000124 2083 FGKS-TLGKVTIQIDKVVTE--GV---YSGLFNLNHDNNKDSSSRTLEIEIIWS 2130 (2138)
Q Consensus 2083 ~~k~-~~g~~~~~~~~v~~~--~~---~~~~~~l~~~~~~~~~~~~~~~~~~w~ 2130 (2138)
+|++ .+|++.|.|.++... |. +..+|.|.....+....+.|.+.|.+-
T Consensus 107 ~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l 160 (173)
T 2nq3_A 107 LKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGL 160 (173)
T ss_dssp SSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESE
T ss_pred CCCCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeee
Confidence 9765 899999999998752 22 244788887622222356666777664
No 71
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.46 E-value=3.9e-14 Score=153.26 Aligned_cols=106 Identities=19% Similarity=0.278 Sum_probs=90.7
Q ss_pred CCceEEEEEeccccc--ccccCCCCceEEEEecC--CCCccccccccCCCCCccccceeeecCCC-CCCeEEEEEeecCC
Q 000124 2008 LPGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGN--GPPRQTKVVSHSISPEWKEGFTWAFDVPP-KGQKLHIICKSKNT 2082 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~t~~~~~~~~p~w~~~f~~~~~~~p-~~~~l~~~~~~~~~ 2082 (2138)
-.|.|.|+|++|.|| .+..|..||||++.+.. +..+||+|+++++||.|||+|.|.+..+- .+..|+|+||+++.
T Consensus 40 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~ 119 (152)
T 1rsy_A 40 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR 119 (152)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS
T ss_pred CCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCC
Confidence 579999999999999 45568899999999953 34457999999999999999999774321 36899999999999
Q ss_pred CC-CcccceEEEEecceeecceecceeecCCC
Q 000124 2083 FG-KSTLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2083 ~~-k~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
++ .+.+|++.|.|.++.....+..+|.|.+.
T Consensus 120 ~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 151 (152)
T 1rsy_A 120 FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA 151 (152)
T ss_dssp SSCCEEEEEEEEEGGGCCCSSCEEEEEECBCC
T ss_pred CCCCcEEEEEEEEchhccCCCCcceEEECCCC
Confidence 96 56899999999999887788999999875
No 72
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Probab=99.46 E-value=5.3e-14 Score=150.40 Aligned_cols=105 Identities=20% Similarity=0.290 Sum_probs=90.2
Q ss_pred CCceEEEEEeccccc--ccccCCCCceEEEEecC--CCCccccccccCCCCCccccceeeecCCC-CCCeEEEEEeecCC
Q 000124 2008 LPGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGN--GPPRQTKVVSHSISPEWKEGFTWAFDVPP-KGQKLHIICKSKNT 2082 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~t~~~~~~~~p~w~~~f~~~~~~~p-~~~~l~~~~~~~~~ 2082 (2138)
-.|.|.|+|++|.|| .+..|..||||++.+.. +..+||+|+++++||.|||+|.|.+..+- .+..|+|+||+++.
T Consensus 32 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~ 111 (143)
T 3f04_A 32 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR 111 (143)
T ss_dssp TTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS
T ss_pred CCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCC
Confidence 468999999999999 45678999999999943 33456999999999999999999876432 45899999999999
Q ss_pred CCC-cccceEEEEecceeecceecceeecCC
Q 000124 2083 FGK-STLGKVTIQIDKVVTEGVYSGLFNLNH 2112 (2138)
Q Consensus 2083 ~~k-~~~g~~~~~~~~v~~~~~~~~~~~l~~ 2112 (2138)
+++ +.+|+|.|.|.++-..+....+|.|.+
T Consensus 112 ~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 142 (143)
T 3f04_A 112 FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142 (143)
T ss_dssp SSCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred CCCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence 975 679999999999988888999999875
No 73
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.45 E-value=1.8e-12 Score=152.52 Aligned_cols=254 Identities=11% Similarity=0.090 Sum_probs=201.7
Q ss_pred hhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhH
Q 000124 471 GKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDI 550 (2138)
Q Consensus 471 ~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~ 550 (2138)
...+.++.|+..|+++++.+|..|+.+|++++. .+.++.|+.+|+++++.+|..++++|+.+.......
T Consensus 20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~ 88 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE 88 (280)
T ss_dssp HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH
T ss_pred HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc
Confidence 345678999999999999999999999999873 236788999999999999999999999997532222
Q ss_pred HHHHHHcCCcchhh-hccccCChhHHHHHHHHHHHHHHhh---chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcch
Q 000124 551 RACVESAGAVPAFL-WLLKSGGPKGQDASAMALTKLIRAA---DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQE 626 (2138)
Q Consensus 551 r~~I~e~GaI~aLv-~LLkS~~~evq~~Aa~AL~nLs~~~---e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~ 626 (2138)
.. .++.|. .+++++++.++..++++|+++.... ....++.|++++.+.++.++..++.+|+.+.
T Consensus 89 ~~------l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~------ 156 (280)
T 1oyz_A 89 DN------VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIN------ 156 (280)
T ss_dssp HH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------
T ss_pred hH------HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC------
Confidence 11 122333 2457788999999999999997432 3467899999999999999999988887642
Q ss_pred HHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 000124 627 DLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGAL 706 (2138)
Q Consensus 627 d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanL 706 (2138)
..+.++.|+.+++++++.+|..|+++|.++.... ..+++.|+.++++.++.+|..|+++|+++
T Consensus 157 --------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~---------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~ 219 (280)
T 1oyz_A 157 --------DKATIPLLINLLKDPNGDVRNWAAFAININKYDN---------SDIRDCFVEMLQDKNEEVRIEAIIGLSYR 219 (280)
T ss_dssp ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC---------HHHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred --------CHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc---------HHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 2347899999999999999999999999986322 24678899999999999999999999998
Q ss_pred cCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhC-CCHHHHHHH
Q 000124 707 SRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAE-GTSEGKKNA 785 (2138)
Q Consensus 707 a~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~-~~~~Vr~~A 785 (2138)
.. ..+++.|+.++.+++ ++..|+.+|+.+.. +..++.|..++.+ .++++...+
T Consensus 220 ~~--------------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~----------~~~~~~L~~~l~~~~~~~~~~~~ 273 (280)
T 1oyz_A 220 KD--------------KRVLSVLCDELKKNT--VYDDIIEAAGELGD----------KTLLPVLDTMLYKFDDNEIITSA 273 (280)
T ss_dssp TC--------------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC----------GGGHHHHHHHHTTSSCCHHHHHH
T ss_pred CC--------------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc----------hhhhHHHHHHHhcCCCcHHHHHH
Confidence 62 237889999998754 88899999998753 4688999998865 467788777
Q ss_pred HHHHH
Q 000124 786 SRALH 790 (2138)
Q Consensus 786 a~AL~ 790 (2138)
..+|.
T Consensus 274 ~~~l~ 278 (280)
T 1oyz_A 274 IDKLK 278 (280)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 77764
No 74
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=7.1e-14 Score=150.21 Aligned_cols=106 Identities=19% Similarity=0.265 Sum_probs=88.8
Q ss_pred CCceEEEEEecccccccc---------cCCCCceEEEEecCC--CCccccccccCCCCCccccceeeecCCC-CCCeEEE
Q 000124 2008 LPGCLTVTIKRGNNLKQT---------MGTTNAFCRLTIGNG--PPRQTKVVSHSISPEWKEGFTWAFDVPP-KGQKLHI 2075 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~~~~---------~~~~~~~~~~~~~~~--~~~~t~~~~~~~~p~w~~~f~~~~~~~p-~~~~l~~ 2075 (2138)
-.|.|.|+|++|.||..+ .|..||||++.+..+ ..+||+|+++++||+|||+|.|.+..+- ....|+|
T Consensus 24 ~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~ 103 (147)
T 2enp_A 24 LHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLL 103 (147)
T ss_dssp TTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEE
T ss_pred CCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEEE
Confidence 468999999999999653 368999999999643 3457999999999999999999875321 2468999
Q ss_pred EEeecCCCCC-cccceEEEEecceeecceecceeecCCC
Q 000124 2076 ICKSKNTFGK-STLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2076 ~~~~~~~~~k-~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
+||+++.+++ +.+|++.|.|.++...+....+|.|.+.
T Consensus 104 ~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~ 142 (147)
T 2enp_A 104 TVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPS 142 (147)
T ss_dssp EEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBCC
T ss_pred EEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeecC
Confidence 9999999976 5799999999999887777788888876
No 75
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.45 E-value=2.2e-14 Score=153.00 Aligned_cols=109 Identities=21% Similarity=0.387 Sum_probs=92.1
Q ss_pred hhcCCceEEEEEeccccc--ccccCCCCceEEEEecCCC-------------CccccccccCCCCCccccceee-ecC-C
Q 000124 2005 LHCLPGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGP-------------PRQTKVVSHSISPEWKEGFTWA-FDV-P 2067 (2138)
Q Consensus 2005 ~~~~~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~-------------~~~t~~~~~~~~p~w~~~f~~~-~~~-~ 2067 (2138)
|....|.|.|+|++|.|| .+..|..||||++.++.++ .+||+|+++++||.|||+|.|. +.. -
T Consensus 13 l~y~~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~ 92 (142)
T 1rh8_A 13 INYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQ 92 (142)
T ss_dssp EEEETTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHH
T ss_pred EEEcCCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHH
Confidence 334489999999999999 5566889999999996553 3579999999999999999995 431 1
Q ss_pred CCCCeEEEEEeecCCCCC-cccceEEEEecceeecceecceeecCCC
Q 000124 2068 PKGQKLHIICKSKNTFGK-STLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2068 p~~~~l~~~~~~~~~~~k-~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
+..+.|+|+||+++.+|+ +.+|+|.|.|.++...+....+|+|.+.
T Consensus 93 l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~ 139 (142)
T 1rh8_A 93 LMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ 139 (142)
T ss_dssp HTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred ccCCEEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCcc
Confidence 257899999999999974 6899999999999888888999999876
No 76
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.45 E-value=3.9e-12 Score=149.74 Aligned_cols=254 Identities=15% Similarity=0.069 Sum_probs=199.2
Q ss_pred hcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc--h
Q 000124 514 AAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD--S 591 (2138)
Q Consensus 514 ~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e--~ 591 (2138)
..+.++.|+..|.++++.+|..|+++|+++.. .++++.|+.+++++++.++..++++|+++..... .
T Consensus 21 ~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~ 89 (280)
T 1oyz_A 21 KKLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED 89 (280)
T ss_dssp HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH
T ss_pred HHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch
Confidence 45789999999999999999999999999963 3467888999999999999999999999864322 1
Q ss_pred hhHHHHH-HHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChh
Q 000124 592 ATINQLL-ALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQD 670 (2138)
Q Consensus 592 ~aI~~Li-~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e 670 (2138)
..++.|. .++.+.++.++..+.++|+.+...... .....++.|+.+++++++.+|..|+.+|.++..
T Consensus 90 ~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~--------~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~---- 157 (280)
T 1oyz_A 90 NVFNILNNMALNDKSACVRATAIESTAQRCKKNPI--------YSPKIVEQSQITAFDKSTNVRRATAFAISVIND---- 157 (280)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG--------GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc--------ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC----
Confidence 2233333 245788889999999999987532110 112358899999999999999999999998764
Q ss_pred hhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHH
Q 000124 671 ICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALAN 750 (2138)
Q Consensus 671 ~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaN 750 (2138)
.++++.|+.++++.++.+|..|+++|+++.... ..+++.|+.++++++..++..|+.+|++
T Consensus 158 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~------------~~~~~~L~~~l~d~~~~vR~~A~~aL~~ 218 (280)
T 1oyz_A 158 -------KATIPLLINLLKDPNGDVRNWAAFAININKYDN------------SDIRDCFVEMLQDKNEEVRIEAIIGLSY 218 (280)
T ss_dssp --------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC------------HHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc------------HHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 458999999999999999999999999985311 2367899999999999999999999998
Q ss_pred hhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHH
Q 000124 751 LLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVA 830 (2138)
Q Consensus 751 La~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~ 830 (2138)
+. .+..++.|+.++.+++ +|..|+++|.++... ..++.|..++...+ +.....
T Consensus 219 ~~----------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~~--------------~~~~~L~~~l~~~~-~~~~~~ 271 (280)
T 1oyz_A 219 RK----------DKRVLSVLCDELKKNT--VYDDIIEAAGELGDK--------------TLLPVLDTMLYKFD-DNEIIT 271 (280)
T ss_dssp TT----------CGGGHHHHHHHHTSSS--CCHHHHHHHHHHCCG--------------GGHHHHHHHHTTSS-CCHHHH
T ss_pred hC----------CHhhHHHHHHHhcCcc--HHHHHHHHHHhcCch--------------hhhHHHHHHHhcCC-CcHHHH
Confidence 86 4568999999998755 999999999988752 36788888886443 334455
Q ss_pred HHHHHH
Q 000124 831 DALEVV 836 (2138)
Q Consensus 831 ~AL~AL 836 (2138)
.+..+|
T Consensus 272 ~~~~~l 277 (280)
T 1oyz_A 272 SAIDKL 277 (280)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555554
No 77
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}
Probab=99.44 E-value=6.1e-14 Score=155.04 Aligned_cols=104 Identities=16% Similarity=0.353 Sum_probs=91.5
Q ss_pred CCceEEEEEecccccccc---cCCCCceEEEEecCCC----CccccccccCCCCCccccceeeecCCCCCCeEEEEEe-e
Q 000124 2008 LPGCLTVTIKRGNNLKQT---MGTTNAFCRLTIGNGP----PRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICK-S 2079 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~~~~---~~~~~~~~~~~~~~~~----~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~-~ 2079 (2138)
-.|.|.|+|++|.||..+ .|..||||++.+..+. .+||+|+++++||+|||+|.|.+. |..+.|+|+|| +
T Consensus 28 ~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~--~~~~~L~~~V~~d 105 (171)
T 2q3x_A 28 KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDES--PQGKVLQVIVWGD 105 (171)
T ss_dssp ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSC--CTTEEEEEEEEEE
T ss_pred CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEec--CCCCEEEEEEEEc
Confidence 479999999999999532 4899999999996543 446999999999999999999874 46899999999 9
Q ss_pred cCCCCC-cccceEEEEecceeecceecceeecCCC
Q 000124 2080 KNTFGK-STLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2080 ~~~~~k-~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
++.+++ +.+|+|.|.|.++.....+..+|.|.+.
T Consensus 106 ~d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 140 (171)
T 2q3x_A 106 YGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPP 140 (171)
T ss_dssp CSTTCSSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred CCCCCCCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence 999976 7999999999999988889999999887
No 78
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=7.7e-14 Score=148.94 Aligned_cols=104 Identities=20% Similarity=0.387 Sum_probs=88.6
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEecCC----CCccccccccCCCCCccccceeeecCCC-CCCeEEEEEeecC
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNG----PPRQTKVVSHSISPEWKEGFTWAFDVPP-KGQKLHIICKSKN 2081 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~t~~~~~~~~p~w~~~f~~~~~~~p-~~~~l~~~~~~~~ 2081 (2138)
.|.|.|+|++|.|| .+..| .||||++.+..+ ..+||+|+++++||+|||+|.|.+..+- .+..|+|+||+++
T Consensus 23 ~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d 101 (142)
T 2dmg_A 23 RNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSG 101 (142)
T ss_dssp TTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECC
T ss_pred CCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECC
Confidence 68999999999999 45567 999999999532 3446999999999999999999873211 2459999999999
Q ss_pred CCCC---cccceEEEEecceeecceecceeecCCC
Q 000124 2082 TFGK---STLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2082 ~~~k---~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
.+|+ +.+|++.|.|.++........+|.|.+.
T Consensus 102 ~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~ 136 (142)
T 2dmg_A 102 GFLSKDKGLLGKVLVALASEELAKGWTQWYDLTED 136 (142)
T ss_dssp CSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCS
T ss_pred CccccCCcEEEEEEEecccccccccccceeeccCC
Confidence 9973 5899999999999888889999999987
No 79
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Probab=99.43 E-value=5.3e-14 Score=151.47 Aligned_cols=110 Identities=17% Similarity=0.285 Sum_probs=91.0
Q ss_pred CceEEEEEecccccc--c-ccCCCCceEEEEecCCC----CccccccccCCCCCccccceeeecCCCC-CCeEEEEEeec
Q 000124 2009 PGCLTVTIKRGNNLK--Q-TMGTTNAFCRLTIGNGP----PRQTKVVSHSISPEWKEGFTWAFDVPPK-GQKLHIICKSK 2080 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~~--~-~~~~~~~~~~~~~~~~~----~~~t~~~~~~~~p~w~~~f~~~~~~~p~-~~~l~~~~~~~ 2080 (2138)
.|.|.|+|++|.||. + ..|..||||++.+..+. .+||+|+++++||+|||+|.|.+..+.. +..|+|+||++
T Consensus 22 ~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~ 101 (148)
T 3fdw_A 22 TQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHH 101 (148)
T ss_dssp TTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEE
T ss_pred CCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEEC
Confidence 489999999999995 3 45899999999996433 3469999999999999999998765433 56799999999
Q ss_pred CCCCC-cccceEEEEecceeecceecceeecCCCCCCCC
Q 000124 2081 NTFGK-STLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDS 2118 (2138)
Q Consensus 2081 ~~~~k-~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~ 2118 (2138)
+.+|+ +.+|+|.|.|.++...+....+|.|.+.....|
T Consensus 102 d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~~~~~ 140 (148)
T 3fdw_A 102 GRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISAES 140 (148)
T ss_dssp CGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC-----
T ss_pred CCCcCCcEEEEEEEEcccccccCCccceEECcCcccccc
Confidence 99975 689999999999998889999999998744444
No 80
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}
Probab=99.41 E-value=1.3e-13 Score=145.93 Aligned_cols=116 Identities=21% Similarity=0.306 Sum_probs=99.2
Q ss_pred eEEEEEecccccccccCCCCceEEEEecCCCCccccccc-cCCCCCccccceeeecCCCC-CCeEEEEEeecCCCCC-cc
Q 000124 2011 CLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVVS-HSISPEWKEGFTWAFDVPPK-GQKLHIICKSKNTFGK-ST 2087 (2138)
Q Consensus 2011 ~l~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~-~~~~p~w~~~f~~~~~~~p~-~~~l~~~~~~~~~~~k-~~ 2087 (2138)
.|+|+|+++.||. |+.|||++++| ||.+|||||++ .+.||+|||.|+|-+--|+. ++.|+|.|+|.++||+ .-
T Consensus 22 sL~V~l~~a~~Lp---g~~Dp~akv~F-Rg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~nrl 97 (144)
T 3l9b_A 22 ALIVHLKTVSELR---GRADRIAKVTF-RGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNKL 97 (144)
T ss_dssp EEEEEEEEEESCC---SCEEEEEEEEE-TTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSCCEE
T ss_pred EEEEEEEEecCCC---CCCCCeEEEEE-eccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccCCCE
Confidence 4899999999999 47899999999 99999999998 59999999999999997654 6899999999999855 56
Q ss_pred cceEEEEecceeecceecceeecCCCCCCCCCccceEEEEEecC
Q 000124 2088 LGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIWSN 2131 (2138)
Q Consensus 2088 ~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~ 2131 (2138)
+|.+.|.|.+|+.+|+..=.-+|.|.+++.-. .++.+++...+
T Consensus 98 IG~~~i~Lq~lv~~~~l~l~~~LvD~n~~~~~-a~I~l~l~Y~p 140 (144)
T 3l9b_A 98 IGTFRMVLQKVVEENRVEVSDTLIDDNNAIIK-TSLSMEVRYQA 140 (144)
T ss_dssp EEEEEEESHHHHHHSEEEEEEEEECTTSCEEE-EEEEEEEEEEE
T ss_pred EEEEEEEhHHhccCCeEEEeecccCCCCCccc-cEEEEEEEecC
Confidence 89999999999999999999999999444322 45555555544
No 81
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.40 E-value=3e-13 Score=143.80 Aligned_cols=106 Identities=20% Similarity=0.285 Sum_probs=86.0
Q ss_pred CCceEEEEEeccccc--cccc-CCCCceEEEEecCC--CCccccccccCCCCCccccceee-ecCC-CCCCeEEEEEeec
Q 000124 2008 LPGCLTVTIKRGNNL--KQTM-GTTNAFCRLTIGNG--PPRQTKVVSHSISPEWKEGFTWA-FDVP-PKGQKLHIICKSK 2080 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~--~~~~-~~~~~~~~~~~~~~--~~~~t~~~~~~~~p~w~~~f~~~-~~~~-p~~~~l~~~~~~~ 2080 (2138)
-.|.|.|+|++|.|| .+.+ |..||||++.+..+ ..+||+|+++++||+|||+|.|. +... ..+..|+|+||++
T Consensus 20 ~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~ 99 (138)
T 1ugk_A 20 ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSF 99 (138)
T ss_dssp GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEE
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEEC
Confidence 458899999999999 4544 78999999999642 34469999999999999999994 4322 2457999999999
Q ss_pred CCCCC-cccceEEEEecceeec-ceecceeecCCC
Q 000124 2081 NTFGK-STLGKVTIQIDKVVTE-GVYSGLFNLNHD 2113 (2138)
Q Consensus 2081 ~~~~k-~~~g~~~~~~~~v~~~-~~~~~~~~l~~~ 2113 (2138)
+.+++ +.+|+|.|.|.++... |...-+|.|.+.
T Consensus 100 d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~ 134 (138)
T 1ugk_A 100 DRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG 134 (138)
T ss_dssp CSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBSS
T ss_pred CCCCCCcEEEEEEEehhHccCCCCcchhhhhhhcC
Confidence 99965 5899999999999774 555556888776
No 82
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}
Probab=99.39 E-value=7.3e-14 Score=152.24 Aligned_cols=105 Identities=15% Similarity=0.117 Sum_probs=86.5
Q ss_pred CCceEEEEEeccccc--ccccCCCCceEEEEecCC--C---CccccccccCCCCCccccceeeecCCC-CCCeEEEEEee
Q 000124 2008 LPGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNG--P---PRQTKVVSHSISPEWKEGFTWAFDVPP-KGQKLHIICKS 2079 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~--~---~~~t~~~~~~~~p~w~~~f~~~~~~~p-~~~~l~~~~~~ 2079 (2138)
-.|.|.|+|++|.|| ++..|..||||++.+... . ++||||+++|+||+|||+|.|.+...- ....|+|+||+
T Consensus 41 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d 120 (155)
T 2z0u_A 41 KNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCT 120 (155)
T ss_dssp TTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEE
T ss_pred CCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEE
Confidence 358999999999999 556789999999999542 1 457999999999999999999875431 35789999999
Q ss_pred cCCCCC-cccceEEEEecceee-cceecceeecCC
Q 000124 2080 KNTFGK-STLGKVTIQIDKVVT-EGVYSGLFNLNH 2112 (2138)
Q Consensus 2080 ~~~~~k-~~~g~~~~~~~~v~~-~~~~~~~~~l~~ 2112 (2138)
++.+|+ +.+|.+.|.|.++.. ......+|.|.+
T Consensus 121 ~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~~ 155 (155)
T 2z0u_A 121 TDRSHLEECLGGAQISLAEVCRSGERSTRWYNLLS 155 (155)
T ss_dssp ECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEBC
T ss_pred CCCCCCCcEEEEEEEEHHHccCCCCccccceEccC
Confidence 999965 679999999999853 456677888753
No 83
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Probab=99.39 E-value=1.3e-13 Score=149.21 Aligned_cols=104 Identities=10% Similarity=0.172 Sum_probs=85.5
Q ss_pred CCceEEEEEeccccc--ccccCCCCceEEEEecCCC----CccccccccCCCCCccccceeeecCCCC-CCeEEEEEeec
Q 000124 2008 LPGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGP----PRQTKVVSHSISPEWKEGFTWAFDVPPK-GQKLHIICKSK 2080 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~t~~~~~~~~p~w~~~f~~~~~~~p~-~~~l~~~~~~~ 2080 (2138)
-+|.|.|+|++|.|| .+..|..||||++.+..+. ++||+|+++++||.|||+|.|.+..+-+ +..|+|+||++
T Consensus 28 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~ 107 (153)
T 1w15_A 28 TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDS 107 (153)
T ss_dssp TTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEEC
T ss_pred CCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeC
Confidence 579999999999999 4556889999999995443 3479999999999999999999876543 36899999999
Q ss_pred CCCC-CcccceEEEEecceeecceecceeecCCC
Q 000124 2081 NTFG-KSTLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2081 ~~~~-k~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
+.++ .+.+|+|.|.+.. ....+..+|.|.+.
T Consensus 108 d~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 139 (153)
T 1w15_A 108 ERGSRNEVIGRLVLGATA--EGSGGGHWKEICDF 139 (153)
T ss_dssp CTTSCCEEEEEEEESTTC--CSHHHHHHHHHHHS
T ss_pred CCCCCCcEEEEEEECCCC--CchHHHHHHHHHhC
Confidence 9996 5689999999998 56678889999886
No 84
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.38 E-value=1.9e-09 Score=141.88 Aligned_cols=436 Identities=14% Similarity=0.096 Sum_probs=297.8
Q ss_pred HHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhc
Q 000124 394 ILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKR 473 (2138)
Q Consensus 394 ~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ 473 (2138)
.|.+-+.++++ .+|..|+++|+++.. ++.. ...++.+..++.+.++.+++.|+.++.++....++.. .
T Consensus 111 ~l~kDL~~~n~-~vr~lAL~~L~~i~~-~~~~-----~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~ 178 (618)
T 1w63_A 111 CIKNDLNHSTQ-FVQGLALCTLGCMGS-SEMC-----RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----E 178 (618)
T ss_dssp HHHHHHSCSSS-HHHHHHHHHHHHHCC-HHHH-----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----G
T ss_pred HHHHhcCCCCH-hHHHHHHHHHHhcCC-HHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----H
Confidence 34444455444 488889999998863 2221 2446778888999999999999999999988765432 2
Q ss_pred hhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhh---------------CCHHHHHHHHH
Q 000124 474 EGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA---------------GSQKAREVAAH 538 (2138)
Q Consensus 474 ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks---------------~d~~vre~Aa~ 538 (2138)
+.++.+..++.+.++.++..|+.+|+.++..+++....+ ...+|.++.+|++ .++-.+.....
T Consensus 179 ~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~ 256 (618)
T 1w63_A 179 MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILR 256 (618)
T ss_dssp GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHH
Confidence 567778889999999999999999999987443321122 3578888888864 37888888999
Q ss_pred HHHHHhcCChhHHHHHHHcCCcchhhhccc------cCChhHHHHHHHHHHHHHHhhc--hhhHHHHHHHhcCCCcchHH
Q 000124 539 VLWILCCHSEDIRACVESAGAVPAFLWLLK------SGGPKGQDASAMALTKLIRAAD--SATINQLLALLLGDSPSSKA 610 (2138)
Q Consensus 539 aL~nLs~~sd~~r~~I~e~GaI~aLv~LLk------S~~~evq~~Aa~AL~nLs~~~e--~~aI~~Li~LL~~~d~~V~~ 610 (2138)
+|+.++..+.... ....+.|..+++ +.+..+...|++++.++...+. ..+++.|..++.+.+++++.
T Consensus 257 ~L~~l~~~~~~~~-----~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~ 331 (618)
T 1w63_A 257 LLRILGRNDDDSS-----EAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRY 331 (618)
T ss_dssp HHHHHTTTCHHHH-----HTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHH
T ss_pred HHHHhCCCCHHHH-----HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHH
Confidence 9999987543322 223333434332 2345789999999988753321 24678899999999999999
Q ss_pred HHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhcc
Q 000124 611 HVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS 690 (2138)
Q Consensus 611 ~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~d 690 (2138)
.+..+|+.+... .++.++ .....++..+++++..+|..|..+|..++. +.+... +++.|...+.+
T Consensus 332 ~aL~~L~~i~~~--~p~~~~------~~~~~i~~~l~d~d~~Ir~~alelL~~l~~--~~nv~~-----iv~eL~~~l~~ 396 (618)
T 1w63_A 332 VALTSLLKTVQT--DHNAVQ------RHRSTIVDCLKDLDVSIKRRAMELSFALVN--GNNIRG-----MMKELLYFLDS 396 (618)
T ss_dssp HHHHHHHHHHHH--HHHHHG------GGHHHHHHGGGSSCHHHHHHHHHHHHHHCC--SSSTHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHhh--CHHHHH------HHHHHHHHHccCCChhHHHHHHHHHHHHcc--cccHHH-----HHHHHHHHHHh
Confidence 999999988753 222222 246678888999999999999999999986 233222 45788889999
Q ss_pred CCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-CchHHHHHHhcCcHHH
Q 000124 691 NTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-DPDIAAEVLLEDVVSA 769 (2138)
Q Consensus 691 gs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~-~~e~r~~Ii~~g~L~~ 769 (2138)
.+.++|..+..++++++...+. ... ..++.|++++......++.+++..+..+.. +|+.+.. +++.
T Consensus 397 ~d~e~r~~~v~~I~~la~k~~~--~~~------~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~-----~v~~ 463 (618)
T 1w63_A 397 CEPEFKADCASGIFLAAEKYAP--SKR------WHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAY-----TVQR 463 (618)
T ss_dssp CCHHHHHHHHHHHHHHHHSSCC--CHH------HHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHH-----HHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCc--cHH------HHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHH-----HHHH
Confidence 9999999999999999874333 222 257888999988776777778888887764 5665543 3556
Q ss_pred HHHHHhC--CCHHHHHHHHHHHHHhhhcCCCc---hhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhccc
Q 000124 770 LTRVLAE--GTSEGKKNASRALHQLLKHFPVG---DVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQ 844 (2138)
Q Consensus 770 LV~LL~~--~~~~Vr~~Aa~AL~nL~~~~~~~---d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~~~~ 844 (2138)
|..++.+ .++.+.+.++|+|+..+..-..+ +.-............|..++....++..++..++.+++.+....+
T Consensus 464 L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~ 543 (618)
T 1w63_A 464 LYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFT 543 (618)
T ss_dssp HHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCc
Confidence 7777765 34455567999999998631100 000000111234455555554334566778888888888774321
Q ss_pred CCcccCCcccccccCCCchHHHHHhhhcCChHHHHHHHHHHHHh
Q 000124 845 GLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRL 888 (2138)
Q Consensus 845 ~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~AieiL~~L 888 (2138)
.. .+.-...|..+..+.++++|++|.+.+.-+
T Consensus 544 ~~------------~~~l~~~L~~~~~~~d~evrdRA~~y~~ll 575 (618)
T 1w63_A 544 CT------------VNRIKKVVSIYGSSIDVELQQRAVEYNALF 575 (618)
T ss_dssp SC------------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ch------------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 10 111123345556677888999999976654
No 85
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Probab=99.37 E-value=2.1e-13 Score=149.64 Aligned_cols=104 Identities=17% Similarity=0.258 Sum_probs=87.4
Q ss_pred CCceEEEEEeccccc--ccccCCCCceEEEEecCC----CCccccccccCCCCCccccceeeecCCC-CCCeEEEEEeec
Q 000124 2008 LPGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNG----PPRQTKVVSHSISPEWKEGFTWAFDVPP-KGQKLHIICKSK 2080 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~t~~~~~~~~p~w~~~f~~~~~~~p-~~~~l~~~~~~~ 2080 (2138)
-.|.|.|+|++|.|| .+..|..||||++.++.+ ..+||+|+++++||.|||+|.|.+..+- .+..|+|+||++
T Consensus 35 ~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~ 114 (166)
T 2cm5_A 35 QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDY 114 (166)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEEC
T ss_pred CCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEEC
Confidence 468999999999999 455688999999999653 3447999999999999999999985432 367999999999
Q ss_pred CCCCC-cccceEEEEecceeecceecceeecCCC
Q 000124 2081 NTFGK-STLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2081 ~~~~k-~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
+.+|+ +.+|+|.|.|..+ ...+..+|.|.+.
T Consensus 115 d~~~~~~~iG~~~i~l~~~--~~~~~~W~~l~~~ 146 (166)
T 2cm5_A 115 DIGKSNDYIGGCQLGISAK--GERLKHWYECLKN 146 (166)
T ss_dssp CSSSCCEEEEEEEEETTCC--HHHHHHHHHHHHC
T ss_pred CCCCCCcEEEeEEEecccC--CchhHHHHHHHhC
Confidence 99975 6899999999984 3356778888876
No 86
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Probab=99.37 E-value=2.2e-13 Score=145.45 Aligned_cols=103 Identities=19% Similarity=0.322 Sum_probs=82.8
Q ss_pred CCceEEEEEeccccc--ccccCCCCceEEEEecCC----CCccccccccCCCCCccccceee-ecCC-CCCCeEEEEEee
Q 000124 2008 LPGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNG----PPRQTKVVSHSISPEWKEGFTWA-FDVP-PKGQKLHIICKS 2079 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~t~~~~~~~~p~w~~~f~~~-~~~~-p~~~~l~~~~~~ 2079 (2138)
-+|.|.|+|++|.|| .+..|..||||++.+..+ ..+||+|+++++||.|||+|.|. +... +.+..|+|+||+
T Consensus 27 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d 106 (142)
T 2chd_A 27 DNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCD 106 (142)
T ss_dssp GGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEE
T ss_pred CCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEE
Confidence 578999999999999 455688999999999653 34469999999999999999987 4322 124799999999
Q ss_pred cCCCCC-cccceEEEEecceeecceecceeec
Q 000124 2080 KNTFGK-STLGKVTIQIDKVVTEGVYSGLFNL 2110 (2138)
Q Consensus 2080 ~~~~~k-~~~g~~~~~~~~v~~~~~~~~~~~l 2110 (2138)
++.+|+ +.+|++.|.|.++...+...-++.|
T Consensus 107 ~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L 138 (142)
T 2chd_A 107 EDKFGHNEFIGETRFSLKKLKANQRKNFNICL 138 (142)
T ss_dssp ECTTSCEEEEEEEEEEGGGCCTTCCEEEEEEC
T ss_pred CCCCCCCcEEEEEEEEHHHcCCCCccEEEEec
Confidence 999986 6899999999998765543333433
No 87
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=99.37 E-value=1.3e-12 Score=155.23 Aligned_cols=125 Identities=16% Similarity=0.253 Sum_probs=103.4
Q ss_pred CCceEEEEEeccccc--ccccCCCCceEEEEecCC--CCccccccccCCCCCccccceeeecCCC-CCCeEEEEEeecCC
Q 000124 2008 LPGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNG--PPRQTKVVSHSISPEWKEGFTWAFDVPP-KGQKLHIICKSKNT 2082 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~t~~~~~~~~p~w~~~f~~~~~~~p-~~~~l~~~~~~~~~ 2082 (2138)
-.|.|.|+|++|.|| .+..|..||||++.++.+ ..++|+|+++++||.|||+|.|.+..+- .++.|+|+||+++.
T Consensus 17 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~ 96 (284)
T 2r83_A 17 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDR 96 (284)
T ss_dssp TTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCS
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECCC
Confidence 468999999999999 455689999999999643 3446999999999999999999875432 46899999999999
Q ss_pred CC-CcccceEEEEecceeecceecceeecCCCCC-CCCCccceEEEEEecCC
Q 000124 2083 FG-KSTLGKVTIQIDKVVTEGVYSGLFNLNHDNN-KDSSSRTLEIEIIWSNR 2132 (2138)
Q Consensus 2083 ~~-k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~w~~~ 2132 (2138)
++ .+.+|+|.|+|.++...+.+..+|.|.+... +.+..+.+.+.+.|.+.
T Consensus 97 ~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p~ 148 (284)
T 2r83_A 97 FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVPT 148 (284)
T ss_dssp SSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCCCCCCEEEEEEEEETT
T ss_pred CCCCceeEEEEEcchhcccCCcceeEEEeeccccccccccccEEEEEEecCc
Confidence 96 5889999999999999888999999987622 23345667788888754
No 88
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.36 E-value=2.3e-09 Score=140.95 Aligned_cols=496 Identities=14% Similarity=0.102 Sum_probs=266.4
Q ss_pred CChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcC
Q 000124 125 GCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGD 204 (2138)
Q Consensus 125 G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~ 204 (2138)
.+....++++.+++.+.++-+.-.+..++.. ++. .+. -++..|.+-+.+++ +.++..|+++|+++...
T Consensus 70 ~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~----~~e---~~~--l~in~l~kDL~~~n---~~vr~lAL~~L~~i~~~ 137 (618)
T 1w63_A 70 FGQLECLKLIASQKFTDKRIGYLGAMLLLDE----RQD---VHL--LMTNCIKNDLNHST---QFVQGLALCTLGCMGSS 137 (618)
T ss_dssp GGHHHHHHHHHSSSHHHHHHHHHHHHHHCCC----CHH---HHH--HHHHHHHHHHSCSS---SHHHHHHHHHHHHHCCH
T ss_pred chHHHHHHHHcCCchHHHHHHHHHHHHHhCC----CcH---HHH--HHHHHHHHhcCCCC---HhHHHHHHHHHHhcCCH
Confidence 4667778888888999999888888888852 222 111 15677888787655 56899999999999741
Q ss_pred CCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHH
Q 000124 205 KDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALE 284 (2138)
Q Consensus 205 ~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~ 284 (2138)
.+. ...++.+..+|.+.++.+|..|+.++.+++..+++... +.++.+..++. +.+..++..|..+|.
T Consensus 138 ------~~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~-D~d~~V~~~Al~~L~ 204 (618)
T 1w63_A 138 ------EMC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLN-EKNHGVLHTSVVLLT 204 (618)
T ss_dssp ------HHH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTT-CCCHHHHHHHHHHHH
T ss_pred ------HHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhC-CCCHhHHHHHHHHHH
Confidence 222 23478888999999999999999999999976654322 56777777776 678899999999999
Q ss_pred HHhhcCHHHHHHHHhcCCHHHHHHhhcCC-----chhhhh-hhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCch
Q 000124 285 ALSSKSIKAKKAVVAADGVPVLIGAIVAP-----SKECMQ-GQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLA 358 (2138)
Q Consensus 285 nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~-----s~e~mq-~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss 358 (2138)
.+...+++..+.+. ..++.++..+.+- .+++.- +....-.|..++.+|..++...+..
T Consensus 205 ~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~-------------- 268 (618)
T 1w63_A 205 EMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDS-------------- 268 (618)
T ss_dssp HHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH--------------
T ss_pred HHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHH--------------
Confidence 99876554433333 4567777655430 011000 0001113333444443332110000
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCC-----ChhHHHHHHHHHHHHhhcCchhHHHHhhhch
Q 000124 359 APVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPH-----DNKLVQERVLEAMASLYGNIFLSQWVSHAEA 433 (2138)
Q Consensus 359 ~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~-----~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~g 433 (2138)
...+.++|..++... ....+...++.++..+..++... ..+
T Consensus 269 -----------------------------~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~-----~~a 314 (618)
T 1w63_A 269 -----------------------------SEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLR-----VLA 314 (618)
T ss_dssp -----------------------------HHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHH-----HHH
T ss_pred -----------------------------HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHH-----HHH
Confidence 001122333332110 11124445555555443222111 123
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHH
Q 000124 434 KKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAIT 513 (2138)
Q Consensus 434 I~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~ 513 (2138)
+..|..++.+.+++++..+..+|..+....+.. + ....+.++.++.+++..+|..|+.+|..++.. .+-..
T Consensus 315 ~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~---~--~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~--~nv~~-- 385 (618)
T 1w63_A 315 INILGRFLLNNDKNIRYVALTSLLKTVQTDHNA---V--QRHRSTIVDCLKDLDVSIKRRAMELSFALVNG--NNIRG-- 385 (618)
T ss_dssp HHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHH---H--GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCS--SSTHH--
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHH---H--HHHHHHHHHHccCCChhHHHHHHHHHHHHccc--ccHHH--
Confidence 444555555555555555555555555432211 1 12334455555555555555555555555542 11111
Q ss_pred hcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhh
Q 000124 514 AAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSAT 593 (2138)
Q Consensus 514 ~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~a 593 (2138)
.++.|...+.+.+.++|..+...++.++..... .....
T Consensus 386 ---iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~---------------------------------------~~~~~ 423 (618)
T 1w63_A 386 ---MMKELLYFLDSCEPEFKADCASGIFLAAEKYAP---------------------------------------SKRWH 423 (618)
T ss_dssp ---HHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCC---------------------------------------CHHHH
T ss_pred ---HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCc---------------------------------------cHHHH
Confidence 123444444445555555555555555442110 01123
Q ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcC--CCHHHHHHHHHHHHHHhhcChhh
Q 000124 594 INQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNS--SNEENQEYAASVLADLFSMRQDI 671 (2138)
Q Consensus 594 I~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks--~s~evre~Aa~ALanL~s~~~e~ 671 (2138)
++.++++++.....+...+..++..+....+ +. ...++..|+.++.+ ..+.....++|+|+..+..-...
T Consensus 424 v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p--~l------~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~ 495 (618)
T 1w63_A 424 IDTIMRVLTTAGSYVRDDAVPNLIQLITNSV--EM------HAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSG 495 (618)
T ss_dssp HHHHHHHHHHTGGGSCSSHHHHHHHHHHHSC--ST------HHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHhcCh--hH------HHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhccc
Confidence 3444444444333333333333333322111 10 01135566666654 23344446888888876421000
Q ss_pred -h-----hhhhhCCCHHHHHHHhc--cCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHH
Q 000124 672 -C-----GSLATDEIVNPCMRLLT--SNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAET 743 (2138)
Q Consensus 672 -r-----~~Ive~GaV~~Lv~LL~--dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~e 743 (2138)
. ..+....+++.|..+++ ..++.+|..+..|+.++....+. .+.. +...|-....+.+.++|..
T Consensus 496 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~---~~~~-----l~~~L~~~~~~~d~evrdR 567 (618)
T 1w63_A 496 QCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC---TVNR-----IKKVVSIYGSSIDVELQQR 567 (618)
T ss_dssp CCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS---CHHH-----HHHHHHHHTTCSCHHHHHH
T ss_pred ccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc---hHHH-----HHHHHHHhcCCCCHHHHHH
Confidence 0 00011123455556664 56889999999999999875443 1211 1122334456788999999
Q ss_pred HHHHHHHhhCCchHHHHHH
Q 000124 744 AVAALANLLSDPDIAAEVL 762 (2138)
Q Consensus 744 Al~ALaNLa~~~e~r~~Ii 762 (2138)
|...+.-+..++..+..+.
T Consensus 568 A~~y~~ll~~~~~~~~~vl 586 (618)
T 1w63_A 568 AVEYNALFKKYDHMRSALL 586 (618)
T ss_dssp HHHHHHHHHTTTTHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHh
Confidence 9999888776665554443
No 89
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1
Probab=99.36 E-value=9.8e-13 Score=139.41 Aligned_cols=86 Identities=15% Similarity=0.269 Sum_probs=73.7
Q ss_pred ceEEEEEecccccccccCCCCceEEEEecCCCCccccccc-cCCCCCccccceeeecCCCCCCeEEEEEeecCCC-CCcc
Q 000124 2010 GCLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVVS-HSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTF-GKST 2087 (2138)
Q Consensus 2010 g~l~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~-~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~-~k~~ 2087 (2138)
|.|.|+|++|.++.. .|..||||++. +..+||++++ +++||+|||+|.|.+.+ ....|+|+|||++ + ..+.
T Consensus 5 ~~L~V~V~~A~~l~~-~g~~DPYv~v~---~~~~kt~~~~~~t~nP~WnE~f~f~v~~--~~~~L~~~V~D~d-~~~dd~ 77 (131)
T 2cjt_A 5 SLLCVGVKKAKFDGA-QEKFNTYVTLK---VQNVKSTTIAVRGSQPSWEQDFMFEINR--LDLGLTVEVWNKG-LIWDTM 77 (131)
T ss_dssp EEEEEEEEEEECSSC-GGGCEEEEEEE---ETTEEEECCCEESSSCEEEEEEEEEECC--CSSEEEEEEEECC-SSCEEE
T ss_pred eEEEEEEEEeECCCC-CCCcCeEEEEE---ecCEEEeEecCCCCCceECCEEEEEEeC--CCCeEEEEEEECC-CCCCCe
Confidence 789999999999854 59999999999 4455666665 79999999999999875 3668999999999 6 4578
Q ss_pred cceEEEEecceeecc
Q 000124 2088 LGKVTIQIDKVVTEG 2102 (2138)
Q Consensus 2088 ~g~~~~~~~~v~~~~ 2102 (2138)
+|++.|.|.++...+
T Consensus 78 iG~~~i~l~~l~~~~ 92 (131)
T 2cjt_A 78 VGTVWIPLRTIRQSN 92 (131)
T ss_dssp EEEEEEEGGGSCBCS
T ss_pred EEEEEEEHHHhhhcC
Confidence 999999999988766
No 90
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}
Probab=99.36 E-value=2e-13 Score=144.45 Aligned_cols=103 Identities=15% Similarity=0.284 Sum_probs=86.5
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEecCC----CCccccccccCCCCCccccceeeecCCCC-CCeEEEEEeecC
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNG----PPRQTKVVSHSISPEWKEGFTWAFDVPPK-GQKLHIICKSKN 2081 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~t~~~~~~~~p~w~~~f~~~~~~~p~-~~~l~~~~~~~~ 2081 (2138)
.|.|.|+|++|.|| .+..|..||||++.+..+ ..+||+|+++++||.|||+|.|.+..+.+ +..|+|+||+++
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d~~ 94 (138)
T 3n5a_A 15 ANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKD 94 (138)
T ss_dssp TTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEECC
T ss_pred CCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEECC
Confidence 48999999999999 456688999999999543 24469999999999999999998765432 468999999999
Q ss_pred CCCC-cccceEEEEecceeecceecceeecCCC
Q 000124 2082 TFGK-STLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2082 ~~~k-~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
.+|+ +.+|+|.|.+++ ....+..+|.|.+.
T Consensus 95 ~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 125 (138)
T 3n5a_A 95 KLSRNDVIGKIYLSWKS--GPGEVKHWKDMIAR 125 (138)
T ss_dssp SSSCCEEEEEEEESSSS--CHHHHHHHHHHHHS
T ss_pred CCCCCcEEEEEEEcccc--CChHHHHHHHHHhC
Confidence 9975 589999999998 45667888898877
No 91
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}
Probab=99.35 E-value=1e-12 Score=168.64 Aligned_cols=98 Identities=20% Similarity=0.249 Sum_probs=86.3
Q ss_pred eEEEEEecccccc-cccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCC-ccc
Q 000124 2011 CLTVTIKRGNNLK-QTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGK-STL 2088 (2138)
Q Consensus 2011 ~l~v~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k-~~~ 2088 (2138)
.|.|+|++|.||. +..|++||||++.+ .|.+.||||+++|+||+|||+|.|.+.+.+.++.|.|+|||+|.+++ |.|
T Consensus 395 ~L~V~V~~A~~L~~D~~g~sDPYV~v~l-~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~dD~L 473 (540)
T 3nsj_A 395 HLVVSNFRAEHLWGDYTTATDAYLKVFF-GGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDDLL 473 (540)
T ss_dssp EEEEEEEEEESCCCSSCSCCCEEEEEEE-TTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSCCEEE
T ss_pred EEEEEEEEccCCCcccCCCcCeEEEEEE-CCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCCCCEE
Confidence 7999999999994 56789999999999 46667899999999999999999987655579999999999999988 899
Q ss_pred ceEEEEecceeecceecceeecCCC
Q 000124 2089 GKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2089 g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
|.|.++|. .|....++.|.+.
T Consensus 474 G~~~~~L~----~g~~~~~~~l~~G 494 (540)
T 3nsj_A 474 GSCDRSPH----SGFHEVTCELNHG 494 (540)
T ss_dssp EEEEECCC----SEEEEEEEECSSS
T ss_pred EEEEEEee----CCcEEEEEEcCCe
Confidence 99999988 5887888886543
No 92
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*
Probab=99.32 E-value=8.1e-13 Score=143.92 Aligned_cols=90 Identities=18% Similarity=0.379 Sum_probs=76.3
Q ss_pred CCceEEEEEeccccc--ccccCCCCceEEEEecCCC----CccccccccCCCCCccccceeeecCCCC-CCeEEEEEeec
Q 000124 2008 LPGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGP----PRQTKVVSHSISPEWKEGFTWAFDVPPK-GQKLHIICKSK 2080 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~t~~~~~~~~p~w~~~f~~~~~~~p~-~~~l~~~~~~~ 2080 (2138)
-.|.|.|+|++|.|| .+..|..||||++.++.+. .+||+|+++++||.|||+|.|.+..+-+ +..|+|+||++
T Consensus 23 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~ 102 (159)
T 1tjx_A 23 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDY 102 (159)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEEC
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEEC
Confidence 478999999999999 5566889999999996432 4479999999999999999998754322 46899999999
Q ss_pred CCCC-CcccceEEEEecc
Q 000124 2081 NTFG-KSTLGKVTIQIDK 2097 (2138)
Q Consensus 2081 ~~~~-k~~~g~~~~~~~~ 2097 (2138)
+.+| .+.+|++.|.+..
T Consensus 103 d~~~~~~~iG~~~i~l~~ 120 (159)
T 1tjx_A 103 DKIGKNDAIGKVFVGYNS 120 (159)
T ss_dssp CSSSCCEEEEEEEEETTC
T ss_pred CCCCCCceEEEEEECCCC
Confidence 9997 5689999999985
No 93
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.32 E-value=6e-09 Score=133.92 Aligned_cols=401 Identities=15% Similarity=0.126 Sum_probs=264.1
Q ss_pred HHHHHHcCC-CChhHHHHHHHHHHHHhhcCc-h-------------hH----HH-HhhhchHHHHHHHHccCCHHHHHHH
Q 000124 393 DILVMLLKP-HDNKLVQERVLEAMASLYGNI-F-------------LS----QW-VSHAEAKKVLIGLITMATADVREYL 452 (2138)
Q Consensus 393 ~~LV~LL~s-~~~e~vr~~Aa~AL~~L~~n~-~-------------~~----~~-L~e~~gI~~LV~LL~sss~evq~~A 452 (2138)
+.|+..|+. .++.++-..++.+|.++.... + +. .. +.+.+++..|+.++...+..++.++
T Consensus 63 ~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~a 142 (651)
T 3grl_A 63 EHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPG 142 (651)
T ss_dssp HHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHH
Confidence 555555543 334445566777787764321 1 11 12 2345789999999999999999999
Q ss_pred HHHHHHhhhccch-hhHHhh-hchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhC--
Q 000124 453 ILSLTKLCRREVG-IWEAIG-KREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG-- 528 (2138)
Q Consensus 453 a~aL~~Ls~~s~~-~~~~I~-e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~-- 528 (2138)
+..|..++.+.+. .+..|. ..+||+.|+.+|++..+.+|..++..|.+|+.++.+.+..+.-+|+++.|+.+++..
T Consensus 143 lqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~ 222 (651)
T 3grl_A 143 VKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGN 222 (651)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTG
T ss_pred HHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCC
Confidence 9999999988776 777777 459999999999999999999999999999998888888888889999999999865
Q ss_pred --CHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCc
Q 000124 529 --SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSP 606 (2138)
Q Consensus 529 --d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~ 606 (2138)
...+...|..+|.||..++..++..+.+.|.++.|..+++.+.... .++..-+.|+. ..-.++++|-..+.
T Consensus 223 ~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~-~W~~Qk~~N~~------~~L~iIrlLv~~~~ 295 (651)
T 3grl_A 223 SDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENS-GWSAQKVTNLH------LMLQLVRVLVSPNN 295 (651)
T ss_dssp GGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSS-CCCHHHHHHHH------HHHHHHHHHTCTTS
T ss_pred CccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCcccc-ccHHHHHHHHH------HHHHHHHHHhCCCC
Confidence 3478899999999999998889999999999999999987643210 00111122221 11223444443322
Q ss_pred chHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCC--CHHHHHHHHHHHHHHhhcChhhhhhhhhCC-----
Q 000124 607 SSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSS--NEENQEYAASVLADLFSMRQDICGSLATDE----- 679 (2138)
Q Consensus 607 ~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~--s~evre~Aa~ALanL~s~~~e~r~~Ive~G----- 679 (2138)
..+ .....+..+.+.|++..|+.++.++ ...++..|..+++.+..+++.+...+.+..
T Consensus 296 ~~~---------------~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~ 360 (651)
T 3grl_A 296 PPG---------------ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNP 360 (651)
T ss_dssp CHH---------------HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSS
T ss_pred CCC---------------CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCC
Confidence 211 0112345567889999999998776 688999999999999999999998887643
Q ss_pred ----CHHHHHHHhcc-CCHHHHHHHHHHHHHhcCCCCcccchhhhHHhc----------CChhh---HHhhhhcCCHHHH
Q 000124 680 ----IVNPCMRLLTS-NTQMVATQSARALGALSRPTKTKTTNKMSYIAE----------GDVKP---LIKLAKTSSIDAA 741 (2138)
Q Consensus 680 ----aV~~Lv~LL~d-gs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~----------G~V~~---Lv~LL~s~s~~Vr 741 (2138)
.+..|+.++.+ ....+|.+|+.++......++. .+..+... ..+.+ |..-+-+.++-..
T Consensus 361 ~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~---~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~ 437 (651)
T 3grl_A 361 PRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQK---GQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSN 437 (651)
T ss_dssp CEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHH---HHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHH
T ss_pred CcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHH---HHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHH
Confidence 23334444544 3568999999999988864332 12222211 11111 3333444454333
Q ss_pred HHHHHHHHHhhCCc-hHHHHHHh-----------cCcHHHHHHHHhCC-CHHHHHHHHHHHHHhhhcCCCchhhhhhhhh
Q 000124 742 ETAVAALANLLSDP-DIAAEVLL-----------EDVVSALTRVLAEG-TSEGKKNASRALHQLLKHFPVGDVLKGNAQC 808 (2138)
Q Consensus 742 ~eAl~ALaNLa~~~-e~r~~Ii~-----------~g~L~~LV~LL~~~-~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~ 808 (2138)
--|+.+|..+..+. +.+..+.+ .-.++.++.++..+ +++++-.=...|+--..++| +.+.+-...
T Consensus 438 wfAavil~hll~~n~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p--~AV~dFL~~ 515 (651)
T 3grl_A 438 WCAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCP--IAVTHFLHN 515 (651)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCH--HHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCCh--HHHHHHHcC
Confidence 34777788877644 44444332 12366777766543 45544333333333333332 334333334
Q ss_pred hhhHHHHHHhhc
Q 000124 809 RFVVLTLVDSLN 820 (2138)
Q Consensus 809 ~gav~~LV~LL~ 820 (2138)
...+..|+..+.
T Consensus 516 ~s~l~~L~~~i~ 527 (651)
T 3grl_A 516 SANVPFLTGQIA 527 (651)
T ss_dssp TTHHHHHHHHHH
T ss_pred CchHHHHHHHHH
Confidence 556777887764
No 94
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=99.26 E-value=4e-12 Score=163.07 Aligned_cols=119 Identities=16% Similarity=0.314 Sum_probs=98.2
Q ss_pred hcCCceEEEEEeccccc--ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCC
Q 000124 2006 HCLPGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTF 2083 (2138)
Q Consensus 2006 ~~~~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~ 2083 (2138)
.+-.|.|.|+|++|.|| .+..|.+||||++.+ .+..++|+|+++++||.|||+|.|.+..+ .++.|.|+|||++.|
T Consensus 383 ~~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~-~~~~~~T~~~~~t~nP~w~e~f~f~~~~~-~~~~l~~~v~d~d~~ 460 (510)
T 3jzy_A 383 TSGIGRLMVHVIEATELKACKPNGKSNPYCEISM-GSQSYTTRTIQDTLNPKWNFNCQFFIKDL-YQDVLCLTLFDRDQF 460 (510)
T ss_dssp ---CEEEEEEEEEEESCCCCSTTSCCCEEEEEEE-TTEEEECCCCSSCSSCEEEEEEEEEESCT-TTCEEEEEEEECCSS
T ss_pred CCCCceEEEEeceeecCCCCCCCCCCCeEEEEEE-CCeeccCCccCCCCCCccCceEEEEecCC-CCCEEEEEEEeCCCC
Confidence 35578999999999999 566799999999999 56667899999999999999999999755 778999999999999
Q ss_pred CC-cccceEEEEecceeecce----ecceeecCCCCCCCCCccceEEEEEe
Q 000124 2084 GK-STLGKVTIQIDKVVTEGV----YSGLFNLNHDNNKDSSSRTLEIEIIW 2129 (2138)
Q Consensus 2084 ~k-~~~g~~~~~~~~v~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~w 2129 (2138)
|+ +.+|+|.|+|.++...+. +..+|.|.+. +.|.+. +.++|++
T Consensus 461 ~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~--~~G~i~-l~~~l~l 508 (510)
T 3jzy_A 461 SPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEV--PTGEVW-VRFDLQL 508 (510)
T ss_dssp SSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSS--SSCEEE-EEEEEEE
T ss_pred CCCCceEEEEEEHHHhccccCCCCceeeeecCCCC--CCceEE-EEEEEEE
Confidence 75 679999999999987655 7778888877 556544 4455554
No 95
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.25 E-value=9.3e-11 Score=132.16 Aligned_cols=188 Identities=22% Similarity=0.271 Sum_probs=161.5
Q ss_pred cCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhccc
Q 000124 557 AGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAAN 636 (2138)
Q Consensus 557 ~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~ 636 (2138)
.+.++.|+.+++++++.++..++.+|+.+. +...++.|++++.+.++.++..+.++|+.+. ..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~---~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~--------------~~ 80 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIG---DERAVEPLIKALKDEDAWVRRAAADALGQIG--------------DE 80 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHC--------------CG
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC---CccHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------------CH
Confidence 567889999999999999999999998875 3578999999999999999999999988752 23
Q ss_pred chhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccch
Q 000124 637 KGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTN 716 (2138)
Q Consensus 637 GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~ 716 (2138)
+.++.|+.+++++++.+|..|+.+|.++.. .+.++.|++++.+.++.+|..|+.+|+++.. +
T Consensus 81 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~----- 142 (211)
T 3ltm_A 81 RAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--E----- 142 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G-----
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--H-----
Confidence 468999999999999999999999999864 4578999999999999999999999999953 1
Q ss_pred hhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcC
Q 000124 717 KMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHF 796 (2138)
Q Consensus 717 r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~ 796 (2138)
..++.|..+++++++.|+..|+.+|+.+.. +.+++.|..++.++++.+|..|.++|.++....
T Consensus 143 -------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 143 -------RAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp -------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred -------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 368899999999999999999999998852 457888999999999999999999999988753
No 96
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1
Probab=99.25 E-value=3.4e-12 Score=140.81 Aligned_cols=88 Identities=15% Similarity=0.248 Sum_probs=74.9
Q ss_pred CceEEEEEecccccccccCCCCceEEEEecCCCCccccccc-cCCCCCccccceeeecCCCCCCeEEEEEeecCCCCCcc
Q 000124 2009 PGCLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVVS-HSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKST 2087 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~-~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k~~ 2087 (2138)
-|.|.|+|++|.++. ..|..||||++. +..+||++++ ++.||+|||+|.|.+.++ ...|+|+|||++..+.+.
T Consensus 13 ~~~L~V~V~~A~~l~-~~g~~DPYV~v~---~~~~kt~~~~~~t~nP~WnE~f~f~v~~~--~~~L~~~V~D~d~~~dd~ 86 (167)
T 2cjs_A 13 LSLLCVGVKKAKFDG-AQEKFNTYVTLK---VQNVESTTIAVRGSQPSWEQDFMFEINRL--DLGLTVEVWNKGLIWDTM 86 (167)
T ss_dssp CCEEEEEEEEEECSS-CGGGCEEEEEEE---ETTEEEECCCEESSSCEEEEEEEEECCCT--TSEEEEEEEECCSSCCEE
T ss_pred eEEEEEEEEEEECCC-CCCCCCeEEEEE---ecceEEEEecCCCCCCCCCCEEEEEeeCC--CCEEEEEEEECCCCCCce
Confidence 368999999999984 469999999999 4456777776 799999999999999853 668999999999335679
Q ss_pred cceEEEEecceeecc
Q 000124 2088 LGKVTIQIDKVVTEG 2102 (2138)
Q Consensus 2088 ~g~~~~~~~~v~~~~ 2102 (2138)
+|++.|.|.++...+
T Consensus 87 iG~~~i~L~~l~~~~ 101 (167)
T 2cjs_A 87 VGTVWIPLRTIRQSN 101 (167)
T ss_dssp EEEEEEEGGGSCBCS
T ss_pred EEEEEEEHHHhcccC
Confidence 999999999988766
No 97
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.23 E-value=1.5e-10 Score=130.59 Aligned_cols=187 Identities=17% Similarity=0.194 Sum_probs=162.4
Q ss_pred hchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHH
Q 000124 472 KREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIR 551 (2138)
Q Consensus 472 e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r 551 (2138)
..+.++.|+++++++++.+|..++..|+.+.. ..+++.|+++|+++++.+|..++.+|+.+..
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 35678999999999999999999999998864 2578999999999999999999999999863
Q ss_pred HHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHh
Q 000124 552 ACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQK 631 (2138)
Q Consensus 552 ~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~ 631 (2138)
.++++.|+.++++.++.++..++++|+++. +.+.++.|++++.+.++.++..+.++|+.+.
T Consensus 80 -----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~---~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----------- 140 (211)
T 3ltm_A 80 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIG---DERAVEPLIKALKDEDWFVRIAAAFALGEIG----------- 140 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-----------
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-----------
Confidence 457788899999999999999999999885 4568999999999999999999999998752
Q ss_pred hhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 000124 632 GSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2138)
Q Consensus 632 ~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~ 708 (2138)
....++.|..+++++++.+|..|+.+|.++.. ..+++.|.++++++++.+|..|..+|.++..
T Consensus 141 ---~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 141 ---DERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKS 203 (211)
T ss_dssp ---CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC---
T ss_pred ---CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 23468999999999999999999999999864 4567889999999999999999999999976
No 98
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.23 E-value=1.6e-10 Score=129.25 Aligned_cols=187 Identities=17% Similarity=0.194 Sum_probs=163.4
Q ss_pred hchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHH
Q 000124 472 KREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIR 551 (2138)
Q Consensus 472 e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r 551 (2138)
..+..+.++++++++++.+|..|+.+|+.+.. .+.++.|+++|+++++.+|..++.+|+.+..
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------ 74 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 74 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 45678999999999999999999999998864 2468999999999999999999999999864
Q ss_pred HHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHh
Q 000124 552 ACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQK 631 (2138)
Q Consensus 552 ~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~ 631 (2138)
.++++.|+.++.+.++.++..++++|+++. +.+.++.|++++.+.++.++..++++|+.+.
T Consensus 75 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~---~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----------- 135 (201)
T 3ltj_A 75 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIG---DERAVEPLIKALKDEDWFVRIAAAFALGEIG----------- 135 (201)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHT-----------
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------
Confidence 357888999999999999999999999885 4568999999999999999999999998762
Q ss_pred hhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 000124 632 GSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2138)
Q Consensus 632 ~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~ 708 (2138)
..+.++.|+.+++++++.+|..|+.+|.++.. ..+++.|..++++.++.+|..|..+|.++..
T Consensus 136 ---~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 136 ---DERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp ---CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred ---CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 23468999999999999999999999999854 3467889999999999999999999998853
No 99
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.21 E-value=3.2e-10 Score=126.78 Aligned_cols=185 Identities=23% Similarity=0.276 Sum_probs=160.3
Q ss_pred CCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccc
Q 000124 558 GAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANK 637 (2138)
Q Consensus 558 GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~G 637 (2138)
+..+.++++++++++.++..|+.+|+.+. +...++.|++++.+.++.++..+.++|+.+. ..+
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~---~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~--------------~~~ 76 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIG---DERAVEPLIKALKDEDAWVRRAAADALGQIG--------------DER 76 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHC---CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------------CGG
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------------CHH
Confidence 45677889999999999999999999875 3478999999999999999999988888652 234
Q ss_pred hhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchh
Q 000124 638 GLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNK 717 (2138)
Q Consensus 638 aI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r 717 (2138)
.++.|+.+++++++.+|..|+.+|.++.. .+.++.|++++.+.++.+|..|+++|+++..
T Consensus 77 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------- 136 (201)
T 3ltj_A 77 AVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------- 136 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---------
Confidence 68999999999999999999999999864 3578899999999999999999999999853
Q ss_pred hhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhh
Q 000124 718 MSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLK 794 (2138)
Q Consensus 718 ~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~ 794 (2138)
.+.++.|+.++++++..++..|+.+|+.+. .+.+++.|..++.+.++.+|..|.++|.++..
T Consensus 137 -----~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 137 -----ERAVEPLIKALKDEDGWVRQSAADALGEIG----------GERVRAAMEKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------SHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------chhHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 237889999999999999999999999884 24578889999999999999999999988753
No 100
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=99.19 E-value=2.1e-11 Score=146.03 Aligned_cols=124 Identities=16% Similarity=0.261 Sum_probs=94.9
Q ss_pred CCceEEEEEeccccc--ccccCCCCceEEEEec--CCCCccccccccCCCCCccccceeeecCCC-CCCeEEEEEeecCC
Q 000124 2008 LPGCLTVTIKRGNNL--KQTMGTTNAFCRLTIG--NGPPRQTKVVSHSISPEWKEGFTWAFDVPP-KGQKLHIICKSKNT 2082 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p-~~~~l~~~~~~~~~ 2082 (2138)
-.|.|.|+|++|.|| .+..|..||||++.+. ++..+||+|+++++||.|||+|.|.+..+- .+..|+|+|||++.
T Consensus 18 ~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~ 97 (296)
T 1dqv_A 18 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDR 97 (296)
T ss_dssp SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCS
T ss_pred CCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcCC
Confidence 468999999999999 5667899999999994 334557999999999999999999874321 24699999999999
Q ss_pred CC-CcccceEEEE-ecceee-cceecceeecCCCCCCCCCccceEEEEEecC
Q 000124 2083 FG-KSTLGKVTIQ-IDKVVT-EGVYSGLFNLNHDNNKDSSSRTLEIEIIWSN 2131 (2138)
Q Consensus 2083 ~~-k~~~g~~~~~-~~~v~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~ 2131 (2138)
|+ .+.+|+|.|. +.+... .+....+|.|.+...+....+.+.+.+.+.+
T Consensus 98 ~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~vsl~y~~ 149 (296)
T 1dqv_A 98 FSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGELNFSLCYLP 149 (296)
T ss_dssp SSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSCCSCCCEEEEEEEEET
T ss_pred CCCCceEEEEEeccccccccCCccceeeeccccccccccccceEEEEEEecc
Confidence 96 5789999995 444443 3345668889876444444566667776654
No 101
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.16 E-value=5.1e-09 Score=130.46 Aligned_cols=378 Identities=14% Similarity=0.069 Sum_probs=254.7
Q ss_pred HHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhC--CHHHHHHHHHHHHHHhcCC---------
Q 000124 479 LISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG--SQKAREVAAHVLWILCCHS--------- 547 (2138)
Q Consensus 479 LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~--d~~vre~Aa~aL~nLs~~s--------- 547 (2138)
++.-+.+++..+|..|-..|.++...+ ..+.+..|..++.+. ++.+|..|+-.|.++....
T Consensus 6 ~L~~~~s~d~~~r~~Ae~~L~~~~~~~--------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~ 77 (462)
T 1ibr_B 6 ILEKTVSPDRLELEAAQKFLERAAVEN--------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQ 77 (462)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhC--------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHH
Confidence 444455778889999999988866410 123556777877765 6899999999999986432
Q ss_pred -------hhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh--c---hhhHHHHHHHhcCC--CcchHHHHH
Q 000124 548 -------EDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--D---SATINQLLALLLGD--SPSSKAHVI 613 (2138)
Q Consensus 548 -------d~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~--e---~~aI~~Li~LL~~~--d~~V~~~A~ 613 (2138)
++.+.. .-..|+..+.+.++.+ ..++.+++.++... + .+.++.|++.+.++ ++.++..+.
T Consensus 78 ~~~~~l~~~~~~~-----ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al 151 (462)
T 1ibr_B 78 QRWLAIDANARRE-----VKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTL 151 (462)
T ss_dssp HHHHTSCHHHHHH-----HHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred hhhhcCCHHHHHH-----HHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 111111 1234667777778888 89999999998763 1 46789999999988 888899999
Q ss_pred HHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCC--CHHHHHHHHHHHHHHhhcChhhhh-hhhhCCCHHHHHHHhcc
Q 000124 614 KVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSS--NEENQEYAASVLADLFSMRQDICG-SLATDEIVNPCMRLLTS 690 (2138)
Q Consensus 614 ~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~--s~evre~Aa~ALanL~s~~~e~r~-~Ive~GaV~~Lv~LL~d 690 (2138)
.+++.+....... .... .....++.++..+++. ++++|..|+.++.++...-.+... .....-.++.+...+.+
T Consensus 152 ~~l~~l~~~~~~~-~~~~--~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 228 (462)
T 1ibr_B 152 EAIGYICQDIDPE-QLQD--KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC 228 (462)
T ss_dssp HHHHHHHHHSCGG-GTGG--GHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCch-hhHh--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC
Confidence 9999887532111 1111 1123578888888887 799999999999997643221110 11111245666677788
Q ss_pred CCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHH----------
Q 000124 691 NTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAE---------- 760 (2138)
Q Consensus 691 gs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~---------- 760 (2138)
.++.+|..++.+|..+....+. ..+.. ...++++.++..+++.+++++..|+..+.+++........
T Consensus 229 ~~~~vr~~~~~~l~~l~~~~~~--~~~~~-~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 305 (462)
T 1ibr_B 229 PDTRVRVAALQNLVKIMSLYYQ--YMETY-MGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGR 305 (462)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGG--GCTTT-TTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHH--HHHHH-HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Confidence 8999999999999999863322 11111 1115667777788889999999999999888753210000
Q ss_pred --------HH---hcCcHHHHHHHHhC-------CCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccC
Q 000124 761 --------VL---LEDVVSALTRVLAE-------GTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAM 822 (2138)
Q Consensus 761 --------Ii---~~g~L~~LV~LL~~-------~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~ 822 (2138)
+. -...+|.+.+.+.+ ++..+|..|+.+|..++...+ +.+. ...++.+...+.+.
T Consensus 306 ~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~~~~-----~~~~~~l~~~l~~~ 378 (462)
T 1ibr_B 306 PPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIV-----PHVLPFIKEHIKNP 378 (462)
T ss_dssp CSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--TTHH-----HHHHHHHHHHTTCS
T ss_pred CccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--HHHH-----HHHHHHHHHHhcCC
Confidence 11 13356666666643 234789999999999998653 2111 34566677777654
Q ss_pred CCCchhHHHHHHHHHHHhhcccCCcccCCcccccccCCCchHHHHHhhhcCChHHHHHHHHHHHHhhccC
Q 000124 823 DMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQ 892 (2138)
Q Consensus 823 ~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~AieiL~~L~~~~ 892 (2138)
+ ...+..|+.+++.++..... ..+. ...+..++.++.++.++++.+|..|..+|.+++...
T Consensus 379 ~--~~~r~aal~~l~~l~~~~~~-~~~~------~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 379 D--WRYRDAAVMAFGCILEGPEP-SQLK------PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp S--HHHHHHHHHHHHHTSSSSCT-TTTC------TTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred C--hHHHHHHHHHHHHHhcCCcH-HHHH------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 4 45699999999999852110 1111 123567899999999999999999999999998754
No 102
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A
Probab=99.14 E-value=2e-11 Score=161.03 Aligned_cols=105 Identities=21% Similarity=0.344 Sum_probs=93.4
Q ss_pred CCceEEEEEeccccccc-----ccCCCCceEEEEecC--CCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeec
Q 000124 2008 LPGCLTVTIKRGNNLKQ-----TMGTTNAFCRLTIGN--GPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSK 2080 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~~~-----~~~~~~~~~~~~~~~--~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~ 2080 (2138)
-.|.|.|+|++|.||.. ..|+.||||++.++. +.++||||+++++||+|||+|.|.+..+ ..+.|+|+|||+
T Consensus 16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~-~~~~L~~~V~D~ 94 (749)
T 1cjy_A 16 YSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPN-QENVLEITLMDA 94 (749)
T ss_dssp CCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTT-SCCBCEEEEEEC
T ss_pred CccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCC-CCCEEEEEEEEC
Confidence 35899999999999954 579999999999954 3455799999999999999999999976 678999999999
Q ss_pred CCCCCcccceEEEEecceeecceecceeecCCC
Q 000124 2081 NTFGKSTLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2081 ~~~~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
+.+|.+.+|+|.|.|.++...++...+|+|.+.
T Consensus 95 D~~~ddfIG~v~I~L~~L~~g~~~~~w~~L~~~ 127 (749)
T 1cjy_A 95 NYVMDETLGTATFTVSSMKVGEKKEVPFIFNQV 127 (749)
T ss_dssp CSSSCEEEEEECCBSTTSCTTCCCCEEEEETTT
T ss_pred CCCCCceeEEEEEEHHHcCCCCceEEEEecCCC
Confidence 999988999999999999877778899999765
No 103
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.12 E-value=1.7e-08 Score=125.78 Aligned_cols=389 Identities=12% Similarity=0.046 Sum_probs=243.8
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccC-CCHhHHHHHHHHHHHHhhcCHHHHHHHH
Q 000124 220 IIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQN-NDISVRASAADALEALSSKSIKAKKAVV 298 (2138)
Q Consensus 220 ~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~-sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~ 298 (2138)
.++..+.+++.++|..|-..|.++... ...++...|+.++.+. .+..+|..|...|+++.......+..-.
T Consensus 5 ~~L~~~~s~d~~~r~~Ae~~L~~~~~~--------~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~ 76 (462)
T 1ibr_B 5 TILEKTVSPDRLELEAAQKFLERAAVE--------NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQY 76 (462)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhh--------ChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHH
Confidence 444455567888999998888876521 1245778888888754 3678999999999988764221111000
Q ss_pred hcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcC
Q 000124 299 AADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQK 378 (2138)
Q Consensus 299 e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~ 378 (2138)
......+ +.+
T Consensus 77 -----~~~~~~l---~~~-------------------------------------------------------------- 86 (462)
T 1ibr_B 77 -----QQRWLAI---DAN-------------------------------------------------------------- 86 (462)
T ss_dssp -----HHHHHTS---CHH--------------------------------------------------------------
T ss_pred -----HhhhhcC---CHH--------------------------------------------------------------
Confidence 0000000 000
Q ss_pred CCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccC--CHHHHHHHHHHH
Q 000124 379 SGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMA--TADVREYLILSL 456 (2138)
Q Consensus 379 ~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~ss--s~evq~~Aa~aL 456 (2138)
....+...|+..+...+.. + ..++.+++.++....-.. .-.+.++.++..+.++ +..++..++.+|
T Consensus 87 --------~~~~ik~~ll~~l~~~~~~-v-~~~~~~i~~ia~~~~~~~--~w~~ll~~L~~~l~~~~~~~~~r~~al~~l 154 (462)
T 1ibr_B 87 --------ARREVKNYVLQTLGTETYR-P-SSASQCVAGIACAEIPVN--QWPELIPQLVANVTNPNSTEHMKESTLEAI 154 (462)
T ss_dssp --------HHHHHHHHHHHHTTCCCSS-S-CSHHHHHHHHHHHHGGGT--CCTTHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHhCCCCch-h-hHHHHHHHHHHHHhcccc--ccHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 0011222233333333222 3 445555555543211000 0135677788888887 888999999999
Q ss_pred HHhhhcc-chhhHHhhhchhHHHHHHHhcCC--chhhHHHHHHHHHHHhhcCchhHH-HHHhcCCchHHHHHhhhCCHHH
Q 000124 457 TKLCRRE-VGIWEAIGKREGIQLLISLLGLS--SEQHQEYAVQLIAILTEQVDDSKW-AITAAGGIPPLVQLLEAGSQKA 532 (2138)
Q Consensus 457 ~~Ls~~s-~~~~~~I~e~ggIp~LV~LL~s~--d~~Vr~~Aa~aL~nLa~~s~e~r~-~I~~aGaIp~LV~LLks~d~~v 532 (2138)
..++... +...... -...++.+.+++++. +..+|..|+.+++++...-.++.. .....-.++.+.+.+.+.++++
T Consensus 155 ~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v 233 (462)
T 1ibr_B 155 GYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRV 233 (462)
T ss_dssp HHHHHHSCGGGTGGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHhCCchhhHhH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHH
Confidence 9988753 1111111 134578888888877 789999999999987642221110 0011113455566677779999
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh------------------c---
Q 000124 533 REVAAHVLWILCCHSED-IRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA------------------D--- 590 (2138)
Q Consensus 533 re~Aa~aL~nLs~~sd~-~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~------------------e--- 590 (2138)
|..++.+|..+...... .+..+. .+.++.++..+++.+++++..+...+..++... .
T Consensus 234 r~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (462)
T 1ibr_B 234 RVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSK 312 (462)
T ss_dssp HHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhH
Confidence 99999999999753221 111110 034455556677888999999999998887642 0
Q ss_pred -------hhhHHHHHHHhcCC-------CcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHH
Q 000124 591 -------SATINQLLALLLGD-------SPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEY 656 (2138)
Q Consensus 591 -------~~aI~~Li~LL~~~-------d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~ 656 (2138)
...+|.+++.+.+. +..++..+..+|+.++..... ... ...++.+...+++.++.+|+.
T Consensus 313 ~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~-~~~------~~~~~~l~~~l~~~~~~~r~a 385 (462)
T 1ibr_B 313 FYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIV------PHVLPFIKEHIKNPDWRYRDA 385 (462)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT-THH------HHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH-HHH------HHHHHHHHHHhcCCChHHHHH
Confidence 23456666777532 346788888999988765432 221 235677778888899999999
Q ss_pred HHHHHHHHhhcCh-hhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 000124 657 AASVLADLFSMRQ-DICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2138)
Q Consensus 657 Aa~ALanL~s~~~-e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~ 708 (2138)
|+.+|..++.+.. +..... -..+++.+++.+++.++.+|..|+++|++++.
T Consensus 386 al~~l~~l~~~~~~~~~~~~-l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 386 AVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (462)
T ss_dssp HHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999999987432 211111 15688999999999999999999999999986
No 104
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}
Probab=99.04 E-value=2.3e-11 Score=155.31 Aligned_cols=99 Identities=15% Similarity=0.214 Sum_probs=14.4
Q ss_pred CceEEEEEecccccccccCCCCceEEEEecCCC-CccccccccC---CCCCccccceeeecCCCCCCeEEEEEeec-C--
Q 000124 2009 PGCLTVTIKRGNNLKQTMGTTNAFCRLTIGNGP-PRQTKVVSHS---ISPEWKEGFTWAFDVPPKGQKLHIICKSK-N-- 2081 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~t~~~~~~---~~p~w~~~f~~~~~~~p~~~~l~~~~~~~-~-- 2081 (2138)
.|.|.|+|++|.||..+ . ||||++.+ +|. .+||||++|+ +||+|||+|+|.+. |+ .+.|+|+||++ +
T Consensus 10 ~~~L~V~VieAk~L~~~-d--dpYv~v~l-~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~-~~-~~~L~v~V~d~~d~~ 83 (483)
T 3bxj_A 10 DNVLKLWIIEARELPPK-K--RYYCELCL-DDMLYARTTSKPRSASGDTVFWGEHFEFNNL-PA-VRALRLHLYRDSDKK 83 (483)
T ss_dssp EECC-------------------------------------------------CCEECC---------------------
T ss_pred ccEEEEEEEEcCCcCCC-C--CCeEEEEE-CCeEEeeeeEEeCCCCCCCCccccEEEEecC-CC-ccEEEEEEEecCCcc
Confidence 47899999999999765 3 99999999 454 4579999999 99999999999875 44 59999999995 3
Q ss_pred -CC-CCcccceEEEEecceeecceecceeecCCC
Q 000124 2082 -TF-GKSTLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2082 -~~-~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
.+ +.+.+|+|.|.+.++...+.+.++|+|.+.
T Consensus 84 ~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~ 117 (483)
T 3bxj_A 84 RKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLP 117 (483)
T ss_dssp -----------------------CCEECC-----
T ss_pred ccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCC
Confidence 23 668899999999999988889999999654
No 105
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=99.04 E-value=1.4e-10 Score=137.65 Aligned_cols=90 Identities=19% Similarity=0.396 Sum_probs=75.4
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEecCC----CCccccccccCCCCCccccceeeecCCCC-CCeEEEEEeecC
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNG----PPRQTKVVSHSISPEWKEGFTWAFDVPPK-GQKLHIICKSKN 2081 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~t~~~~~~~~p~w~~~f~~~~~~~p~-~~~l~~~~~~~~ 2081 (2138)
.|.|.|+|++|.|| .+..|..||||++.+..+ ..+||+|+++++||.|||+|.|.+..+.+ +..|+|+||+++
T Consensus 149 ~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d 228 (284)
T 2r83_A 149 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYD 228 (284)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEECC
T ss_pred CCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeCC
Confidence 57899999999999 456688999999999543 23469999999999999999998854433 347999999999
Q ss_pred CCCC-cccceEEEEecce
Q 000124 2082 TFGK-STLGKVTIQIDKV 2098 (2138)
Q Consensus 2082 ~~~k-~~~g~~~~~~~~v 2098 (2138)
.+|+ +.+|+|.|.+...
T Consensus 229 ~~~~~~~iG~~~i~l~~~ 246 (284)
T 2r83_A 229 KIGKNDAIGKVFVGYNST 246 (284)
T ss_dssp SSSCCCEEEEEEEETTCC
T ss_pred CCCCCcEEEEEEECCCCC
Confidence 9965 6899999999763
No 106
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A
Probab=99.00 E-value=2.8e-10 Score=149.07 Aligned_cols=117 Identities=21% Similarity=0.322 Sum_probs=93.4
Q ss_pred cCCceEEEEEecccccccc----cCCCCceEEEEecCC----CCccccccccC-CCCCccccceeeecCCCCCCeEEEEE
Q 000124 2007 CLPGCLTVTIKRGNNLKQT----MGTTNAFCRLTIGNG----PPRQTKVVSHS-ISPEWKEGFTWAFDVPPKGQKLHIIC 2077 (2138)
Q Consensus 2007 ~~~g~l~v~v~~~~~~~~~----~~~~~~~~~~~~~~~----~~~~t~~~~~~-~~p~w~~~f~~~~~~~p~~~~l~~~~ 2077 (2138)
--||.|+|+|++|.||... .|..||||++.+... .++||||+++| +||+|||+|+|.+..| -...|+++|
T Consensus 494 ~~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~-el~~L~~~V 572 (624)
T 1djx_A 494 WRPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVP-DLALVRFMV 572 (624)
T ss_dssp CCCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCG-GGCEEEEEE
T ss_pred ccceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecC-CCCEEEEEE
Confidence 3578999999999999432 478999999999332 24479999998 9999999999999876 457999999
Q ss_pred eecCCCC-CcccceEEEEecceeecceecceeecCCCCCCCCCc---cceEEEEEec
Q 000124 2078 KSKNTFG-KSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSS---RTLEIEIIWS 2130 (2138)
Q Consensus 2078 ~~~~~~~-k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~w~ 2130 (2138)
|+++.+| .+.+|++.|.|..+.. |. ..++|.+. +|.. .+|.++++.+
T Consensus 573 ~D~D~~~~dd~iG~~~ipl~~L~~-G~--r~v~L~d~---~g~~~~~~~L~v~i~~~ 623 (624)
T 1djx_A 573 EDYDSSSKNDFIGQSTIPWNSLKQ-GY--RHVHLLSK---NGDQHPSATLFVKISIQ 623 (624)
T ss_dssp EECCSSSCCEEEEEEEEEGGGBCC-EE--EEEEEECT---TSCEEEEEEEEEEEEEE
T ss_pred EEcCCCCCCceeEEEEEEHHHcCC-Cc--EEEeCCCC---CcCCCCceEEEEEEEEE
Confidence 9999984 5789999999999754 42 26888766 3443 5677777654
No 107
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=98.98 E-value=7.1e-11 Score=141.52 Aligned_cols=104 Identities=17% Similarity=0.307 Sum_probs=82.1
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEecC-C---CCccccccccCCCCCccccceeeecCCCCC-CeEEEEEeecC
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGN-G---PPRQTKVVSHSISPEWKEGFTWAFDVPPKG-QKLHIICKSKN 2081 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~-~---~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~-~~l~~~~~~~~ 2081 (2138)
.|.|.|+|++|.|| .+..|..||||++.+.. | .++||+|+++++||.|||+|.|.+..+.+. ..|+|+|||++
T Consensus 151 ~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d 230 (296)
T 1dqv_A 151 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYD 230 (296)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECC
T ss_pred cceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeCC
Confidence 48999999999999 45568899999999953 3 334699999999999999999987655443 47999999999
Q ss_pred CCCC-cccceEEEEecceeecceecceeecCCC
Q 000124 2082 TFGK-STLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2082 ~~~k-~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
.+|+ +.+|+|.|.+...-.. .+..+|.+...
T Consensus 231 ~~~~~~~iG~~~i~l~~~~~~-~~~~W~~~~~~ 262 (296)
T 1dqv_A 231 CIGHNEVIGVCRVGPEAADPH-GREHWAEMLAN 262 (296)
T ss_dssp SSSCCEEEEECCCSSCTTCHH-HHHHHHTSSSS
T ss_pred CCCCCceEEEEEECCccCCch-hHHHHHHHHhC
Confidence 9975 7899999999875331 23444554443
No 108
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.91 E-value=6e-06 Score=108.77 Aligned_cols=481 Identities=14% Similarity=0.105 Sum_probs=294.2
Q ss_pred cCcHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChh
Q 000124 83 AQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHV 162 (2138)
Q Consensus 83 aGgVp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~ 162 (2138)
..+....++++.+.+...|.-+--.+..++........ -.+..+.+-|.++++.+|..|+++|.++.. +.
T Consensus 73 s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~----L~iN~l~kDl~~~n~~ir~lALr~L~~i~~------~e 142 (621)
T 2vgl_A 73 DFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIR----LINNAIKNDLASRNPTFMGLALHCIANVGS------RE 142 (621)
T ss_dssp CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHH----HHHHHHHHHHHSCCHHHHHHHHHHHHHHCC------HH
T ss_pred chhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHH----HHHHHHHHhcCCCCHHHHHHHHHHhhccCC------HH
Confidence 34778888999999999999888888888755332111 124567777788899999999999999973 21
Q ss_pred hHHHHHHcCcHHHHHHhh--CCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHH
Q 000124 163 GMKIFVTEGVVPTLWDQL--NPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLL 240 (2138)
Q Consensus 163 gre~IveaG~Ip~Ll~LL--~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL 240 (2138)
+. ...+|.+.+.+ .+. .+.|+..|+-++.++....+.. +...+.++.+..+|.+.++.++.+|+.+|
T Consensus 143 ----~~-~~l~~~v~~~l~~~d~---~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~a~~~l 211 (621)
T 2vgl_A 143 ----MA-EAFAGEIPKILVAGDT---MDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLNDQHLGVVTAATSLI 211 (621)
T ss_dssp ----HH-HHHTTHHHHHHHCSSS---CHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred ----HH-HHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhCCCCccHHHHHHHHH
Confidence 22 34678888888 543 4789999999999998865432 11236799999999998999999999999
Q ss_pred HHHHhhcCCCcchhhccchHHHHH----HHhccC-C-----------CHhHHHHHHHHHHHHhhc-CHHHHHHHHhcCCH
Q 000124 241 ARLMLAFGDSIPTVIDSGAVKALV----QLVGQN-N-----------DISVRASAADALEALSSK-SIKAKKAVVAADGV 303 (2138)
Q Consensus 241 ~nLs~~~~e~r~~l~~~GaL~~LL----~LL~s~-s-----------d~~vr~~Aa~aL~nLs~~-s~e~Rk~i~e~ggL 303 (2138)
..++..+++. + ...++.++ +++..+ . ++-.+......+..+... .++.++.+.+ .+
T Consensus 212 ~~i~~~~~~~---~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L 284 (621)
T 2vgl_A 212 TTLAQKNPEE---F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CL 284 (621)
T ss_dssp HHHHHHCHHH---H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HH
T ss_pred HHHHHhChHH---H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HH
Confidence 9998654321 1 12334333 333211 1 455666666666555542 2444444432 22
Q ss_pred HHHHHhhcCCch-hhhhhhh-hhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCC
Q 000124 304 PVLIGAIVAPSK-ECMQGQR-GQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGV 381 (2138)
Q Consensus 304 ~~LI~LL~s~s~-e~mq~~~-~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~ 381 (2138)
+.++..+.+..+ ...++.. ..++.--|..++. .++ +
T Consensus 285 ~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~--------------------------------------~l~--~-- 322 (621)
T 2vgl_A 285 ETILNKAQEPPKSKKVQHSNAKNAVLFEAISLII--------------------------------------HHD--S-- 322 (621)
T ss_dssp HHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHH--------------------------------------HHC--C--
T ss_pred HHHHHhhccCcccccccccchHHHHHHHHHHHHH--------------------------------------hcC--C--
Confidence 333332211100 0011000 0001111111111 111 0
Q ss_pred CCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHc-cCCHHHHHHHHHHHHHhh
Q 000124 382 DDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLIT-MATADVREYLILSLTKLC 460 (2138)
Q Consensus 382 ~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~-sss~evq~~Aa~aL~~Ls 460 (2138)
...+. ..+...|..++.+.++. +|.-++.+|..+.........+ ......++..+. +.+..++..+...|..++
T Consensus 323 -~~~~~-~~~~~~L~~~L~~~~~n-iry~aL~~l~~l~~~~~~~~~~--~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~ 397 (621)
T 2vgl_A 323 -EPNLL-VRACNQLGQFLQHRETN-LRYLALESMCTLASSEFSHEAV--KTHIETVINALKTERDVSVRQRAVDLLYAMC 397 (621)
T ss_dssp -CHHHH-HHHHHHHHHHSSCSCHH-HHHHHHHHHHHHTTCTTTHHHH--HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred -cHHHH-HHHHHHHHHHhcCCCcc-hHHHHHHHHHHHHhccCcHHHH--HHHHHHHHHHhccCCCHhHHHHHHHHHHHHc
Confidence 01111 13446778888766654 8999999999886442111122 223456777777 889999999999999998
Q ss_pred hccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcC-chhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHH
Q 000124 461 RREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQV-DDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHV 539 (2138)
Q Consensus 461 ~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s-~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~a 539 (2138)
.. .+... .+..|...+...+...+..++..++.++..- +... ..+..|++++......+...+...
T Consensus 398 ~~--~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~------~~v~~Ll~ll~~~~~~v~~ev~~~ 464 (621)
T 2vgl_A 398 DR--SNAQQ-----IVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYT------WYVDTILNLIRIAGDYVSEEVWYR 464 (621)
T ss_dssp CH--HHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTH------HHHHHHHHHHHHHGGGSCSHHHHH
T ss_pred Ch--hhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHH------HHHHHHHHHHHhhcccchHHHHHH
Confidence 55 33333 3567778888888899999999999988521 2222 245678888876544455555666
Q ss_pred HHHHhcCChhHHHHHHHcCCcchhhhccccCC--hhHHHHHHHHHHHHHHhhch-------hhHHHHHHHhcCCCcchHH
Q 000124 540 LWILCCHSEDIRACVESAGAVPAFLWLLKSGG--PKGQDASAMALTKLIRAADS-------ATINQLLALLLGDSPSSKA 610 (2138)
Q Consensus 540 L~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~--~evq~~Aa~AL~nLs~~~e~-------~aI~~Li~LL~~~d~~V~~ 610 (2138)
+..+....+..+... +..|++.+.+.. ..+...++|.++..+..-.. +.+..+.+-+...+..++.
T Consensus 465 l~~ii~~~~~~~~~~-----~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~ 539 (621)
T 2vgl_A 465 VIQIVINRDDVQGYA-----AKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRA 539 (621)
T ss_dssp HHHHHGGGCSCHHHH-----HHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHhCChhHHHHH-----HHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHH
Confidence 666655445555442 345666666543 35667788999988754221 3345555556678888999
Q ss_pred HHHHHHHHHHhhhcchHHHHhhhcccchhhHHHH-hhc--CCCHHHHHHHHHHHHHHh
Q 000124 611 HVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQ-VLN--SSNEENQEYAASVLADLF 665 (2138)
Q Consensus 611 ~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~-LLk--s~s~evre~Aa~ALanL~ 665 (2138)
++..++..+....+ +. + ..+..+++ ... +.+.++|+.|...+.=+.
T Consensus 540 ~~Lta~~Kl~~~~p--~~-~------~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~ 588 (621)
T 2vgl_A 540 LLLSTYIKFVNLFP--EV-K------ATIQDVLRSDSQLKNADVELQQRAVEYLRLST 588 (621)
T ss_dssp HHHHHHHHHHHHCG--GG-H------HHHHHHHSSHHHHSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCh--HH-H------HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHc
Confidence 99888888754321 11 0 11333333 223 679999999987654443
No 109
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.89 E-value=8.1e-06 Score=107.51 Aligned_cols=512 Identities=13% Similarity=0.102 Sum_probs=304.3
Q ss_pred HHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHh
Q 000124 100 AKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQ 179 (2138)
Q Consensus 100 vr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~L 179 (2138)
-+....+++..+..+.+. ..+...+++++.+++.+.++.+.-++..++.. +++ .+.- ++..+.+=
T Consensus 55 k~~~l~Kli~l~~~G~d~------s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~----~~e---~~~L--~iN~l~kD 119 (621)
T 2vgl_A 55 KKKYVCKLLFIFLLGHDI------DFGHMEAVNLLSSNRYTEKQIGYLFISVLVNS----NSE---LIRL--INNAIKND 119 (621)
T ss_dssp HHHHHHHHHHHHHHSCCC------CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCC----CHH---HHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCC------chhHHHHHHHhcCCCHHHHHHHHHHHHHHccC----CcH---HHHH--HHHHHHHh
Confidence 344455555544433321 36788899999999999999999999998852 222 1111 45566666
Q ss_pred hCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhh--ccCCHHHHHHHHHHHHHHHhhcCCCcchhhcc
Q 000124 180 LNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLL--SSDNAAAQSNAASLLARLMLAFGDSIPTVIDS 257 (2138)
Q Consensus 180 L~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL--~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~ 257 (2138)
+.+++ +.++..|+++|+++.. ..+.+ .-++.+.+.| .+.++.+|..|+-++.++...+++... ..
T Consensus 120 l~~~n---~~ir~lALr~L~~i~~------~e~~~-~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~---~~ 186 (621)
T 2vgl_A 120 LASRN---PTFMGLALHCIANVGS------REMAE-AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVP---MG 186 (621)
T ss_dssp HHSCC---HHHHHHHHHHHHHHCC------HHHHH-HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCC---CC
T ss_pred cCCCC---HHHHHHHHHHhhccCC------HHHHH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcC---ch
Confidence 66554 6789999999999965 22322 2456777888 778899999999999999976654332 24
Q ss_pred chHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHh
Q 000124 258 GAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANI 337 (2138)
Q Consensus 258 GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanI 337 (2138)
+.++.+..+|. +.+..++..|..++..+...+++.-. ..++.+++.+. ++
T Consensus 187 ~~~~~l~~lL~-d~d~~V~~~a~~~l~~i~~~~~~~~~-----~~~~~~~~~L~------------------------~l 236 (621)
T 2vgl_A 187 DWTSRVVHLLN-DQHLGVVTAATSLITTLAQKNPEEFK-----TSVSLAVSRLS------------------------RI 236 (621)
T ss_dssp SCHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHCHHHHT-----THHHHHHHHHH------------------------HH
T ss_pred hHHHHHHHHhC-CCCccHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHH------------------------HH
Confidence 78999999997 67889999999988888775433211 11122222110 00
Q ss_pred hcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHH
Q 000124 338 YGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMAS 417 (2138)
Q Consensus 338 sGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~ 417 (2138)
+...... .+++.-..+. +++ .|...++.+..
T Consensus 237 --------------l~~~~~~-------------------~~~~~~~~~~---------------~~w-~qi~il~ll~~ 267 (621)
T 2vgl_A 237 --------------VTSASTD-------------------LQDYTYYFVP---------------APW-LSVKLLRLLQC 267 (621)
T ss_dssp --------------HHCCSSS-------------------CSTTEETTEE---------------SHH-HHHHHHHHGGG
T ss_pred --------------HhCCCCC-------------------ccchhhcCCC---------------Cch-HHHHHHHHHHH
Confidence 0000000 0000000000 000 11222222221
Q ss_pred hhc--CchhHHHHhhhchHHHHHHHH---------ccC--CHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhc
Q 000124 418 LYG--NIFLSQWVSHAEAKKVLIGLI---------TMA--TADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLG 484 (2138)
Q Consensus 418 L~~--n~~~~~~L~e~~gI~~LV~LL---------~ss--s~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~ 484 (2138)
+.. +++..+.+. +.+..++..+ .+. ...+..+++.++..+... ++.. ..++..|..++.
T Consensus 268 ~~~~~d~~~~~~l~--~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~-~~~~-----~~~~~~L~~~L~ 339 (621)
T 2vgl_A 268 YPPPEDPAVRGRLT--ECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSE-PNLL-----VRACNQLGQFLQ 339 (621)
T ss_dssp SSSCSSHHHHHHHH--HHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCC-HHHH-----HHHHHHHHHHSS
T ss_pred hCCCCCHHHHHHHH--HHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCc-HHHH-----HHHHHHHHHHhc
Confidence 111 011111110 0111111111 111 235667777777776532 2211 245778889999
Q ss_pred CCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhh-hCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchh
Q 000124 485 LSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLE-AGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAF 563 (2138)
Q Consensus 485 s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLk-s~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aL 563 (2138)
+.++.+|..++..|..++...+. ...+ ......++..|+ +.+..+|..+..+|..++. .+.... .+..|
T Consensus 340 ~~~~niry~aL~~l~~l~~~~~~-~~~~--~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~-~~Nv~~------Iv~eL 409 (621)
T 2vgl_A 340 HRETNLRYLALESMCTLASSEFS-HEAV--KTHIETVINALKTERDVSVRQRAVDLLYAMCD-RSNAQQ------IVAEM 409 (621)
T ss_dssp CSCHHHHHHHHHHHHHHTTCTTT-HHHH--HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC-HHHHHH------HHHHH
T ss_pred CCCcchHHHHHHHHHHHHhccCc-HHHH--HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC-hhhHHH------HHHHH
Confidence 89999999999999999875432 1222 345677888888 8899999999999999975 222222 34456
Q ss_pred hhccccCChhHHHHHHHHHHHHHHhh---chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhh
Q 000124 564 LWLLKSGGPKGQDASAMALTKLIRAA---DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLR 640 (2138)
Q Consensus 564 v~LLkS~~~evq~~Aa~AL~nLs~~~---e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~ 640 (2138)
...+.+.+.+.+..+..+++.++..- ....+..|++++......+...+...+..+....+ +. + .-++.
T Consensus 410 ~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~--~~-~-----~~~~~ 481 (621)
T 2vgl_A 410 LSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRD--DV-Q-----GYAAK 481 (621)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGC--SC-H-----HHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCCh--hH-H-----HHHHH
Confidence 66777788999999999999988541 24567889999986655555555555555543211 11 1 11466
Q ss_pred HHHHhhcCC--CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhh
Q 000124 641 SLVQVLNSS--NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKM 718 (2138)
Q Consensus 641 aLV~LLks~--s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~ 718 (2138)
.|+..+++. ...+-..++|.++..+..-++. ..+.-...+..+..-+...++.+|..+..++.++....++ .+.
T Consensus 482 ~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~-~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~---~~~ 557 (621)
T 2vgl_A 482 TVFEALQAPACHENLVKVGGYILGEFGNLIAGD-PRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE---VKA 557 (621)
T ss_dssp HHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSS-TTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG---GHH
T ss_pred HHHHHHcCccchHHHHHHHHHHhcchHHHhccc-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH---HHH
Confidence 777777765 3455566778888776421110 0000001234455555678899999999999999753322 221
Q ss_pred hHHhcCChhhHHhh-hh--cCCHHHHHHHHHHHHHhhCC
Q 000124 719 SYIAEGDVKPLIKL-AK--TSSIDAAETAVAALANLLSD 754 (2138)
Q Consensus 719 ~I~~~G~V~~Lv~L-L~--s~s~~Vr~eAl~ALaNLa~~ 754 (2138)
.+..+++. .. +.+.++|..|...+.-+..+
T Consensus 558 ------~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~~~ 590 (621)
T 2vgl_A 558 ------TIQDVLRSDSQLKNADVELQQRAVEYLRLSTVA 590 (621)
T ss_dssp ------HHHHHHSSHHHHSCSSHHHHHHHHHHHHHHHSS
T ss_pred ------HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHccC
Confidence 23333333 33 78899999999988877654
No 110
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=98.85 E-value=1.4e-09 Score=144.30 Aligned_cols=105 Identities=21% Similarity=0.426 Sum_probs=91.1
Q ss_pred CCceEEEEEeccccc--ccccCCCCceEEEEec----CCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecC
Q 000124 2008 LPGCLTVTIKRGNNL--KQTMGTTNAFCRLTIG----NGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKN 2081 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~ 2081 (2138)
-+|.|+|+|.+|.|| .+..|..||||++.+- +..++||+|+++++||.|||+|+|.+........|.|+||+.+
T Consensus 170 ~~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d 249 (674)
T 3pfq_A 170 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWD 249 (674)
T ss_dssp CSSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECC
T ss_pred ccceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeecc
Confidence 478999999999999 5677999999999992 2234469999999999999999999988777788999999999
Q ss_pred CCCC-cccceEEEEecceeecceecceeecCCC
Q 000124 2082 TFGK-STLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2082 ~~~k-~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
.+++ +.+|.+.|.+.++...+ ..++|.|.+.
T Consensus 250 ~~~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls~ 281 (674)
T 3pfq_A 250 LTSRNDFMGSLSFGISELQKAG-VDGWFKLLSQ 281 (674)
T ss_dssp SSSCCEECCBCCCBTTHHHHCC-EEEEEECBCT
T ss_pred cccccccccccccchhhhccCC-cccceeeccc
Confidence 9954 67999999999998766 4899999876
No 111
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.80 E-value=0.00011 Score=98.81 Aligned_cols=338 Identities=12% Similarity=0.063 Sum_probs=227.2
Q ss_pred HHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhc---CCchhhHHHHHHHHHHHhhcCchhHHHHHhc
Q 000124 439 GLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLG---LSSEQHQEYAVQLIAILTEQVDDSKWAITAA 515 (2138)
Q Consensus 439 ~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~---s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~a 515 (2138)
+++....+..+..|+..|+-+-..+. .+|+..|...+. ++++.++..|+.+|+.+......
T Consensus 365 ~Wl~k~~~~~k~sA~aSLGlIh~g~~--------~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~-------- 428 (963)
T 4ady_A 365 PWLGKAQNWAKFTATASLGVIHKGNL--------LEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR-------- 428 (963)
T ss_dssp HHHHHCCTHHHHHHHHHHHHHTSSCT--------TTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--------
T ss_pred hhhhccchHHHHHHHHHhhhhccCch--------HHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--------
Confidence 34555556667777777776655432 356777888776 66788999999999998764321
Q ss_pred CCchHHHHHhhhCC--------HHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHH
Q 000124 516 GGIPPLVQLLEAGS--------QKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIR 587 (2138)
Q Consensus 516 GaIp~LV~LLks~d--------~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~ 587 (2138)
.++..|...|.+.+ +.++..|+-+|+....... . ..++..|..++.+.+..+++.++.+|+.+..
T Consensus 429 ~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~-~------eev~e~L~~~L~dd~~~~~~~AalALGli~v 501 (963)
T 4ady_A 429 DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA-N------IEVYEALKEVLYNDSATSGEAAALGMGLCML 501 (963)
T ss_dssp HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC-C------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCC-C------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhc
Confidence 14566777776655 6788888888888644221 1 1235557777777777778889999887743
Q ss_pred h-hchhhHHHHHHHhc-CCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcC-CCHHHHHHHHHHHHHH
Q 000124 588 A-ADSATINQLLALLL-GDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNS-SNEENQEYAASVLADL 664 (2138)
Q Consensus 588 ~-~e~~aI~~Li~LL~-~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks-~s~evre~Aa~ALanL 664 (2138)
. .+..++..|+..+. +.++.++..+.-+|+.+. +.+...++.+++.+.. .++-+|..++.++.--
T Consensus 502 GTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~------------~g~~e~~~~li~~L~~~~dp~vRygaa~alglA 569 (963)
T 4ady_A 502 GTGKPEAIHDMFTYSQETQHGNITRGLAVGLALIN------------YGRQELADDLITKMLASDESLLRYGGAFTIALA 569 (963)
T ss_dssp TCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT------------TTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhh------------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3 24567777777654 556667777777777653 2344468888887764 5888999888776643
Q ss_pred hhcChhhhhhhhhCCCHHHHHHHh-ccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhh-hhcCCHHHHH
Q 000124 665 FSMRQDICGSLATDEIVNPCMRLL-TSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKL-AKTSSIDAAE 742 (2138)
Q Consensus 665 ~s~~~e~r~~Ive~GaV~~Lv~LL-~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~L-L~s~s~~Vr~ 742 (2138)
..+ ..+ ..+++.|+..+ .+.++.+|..|+.+|+.+....+ ..++.++.+ +++.++.+|.
T Consensus 570 yaG-TGn------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~------------e~v~rlv~~L~~~~d~~VR~ 630 (963)
T 4ady_A 570 YAG-TGN------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY------------TTVPRIVQLLSKSHNAHVRC 630 (963)
T ss_dssp TTT-SCC------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC------------SSHHHHTTTGGGCSCHHHHH
T ss_pred hcC-CCC------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH------------HHHHHHHHHHHhcCCHHHHH
Confidence 331 111 12455566554 45678899999999999876332 256777764 4678999999
Q ss_pred HHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccC
Q 000124 743 TAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAM 822 (2138)
Q Consensus 743 eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~ 822 (2138)
.|..||+.++.... ...++..|.++..+.++.||+.|+.+|+.++..+.. ..... -......|.......
T Consensus 631 gAalALGli~aGn~------~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnn--a~~~r--va~~l~~L~~~~~dk 700 (963)
T 4ady_A 631 GTAFALGIACAGKG------LQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTE--KLNPQ--VADINKNFLSVITNK 700 (963)
T ss_dssp HHHHHHHHHTSSSC------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCT--TTCTT--HHHHHHHHHHHHHCS
T ss_pred HHHHHHHHhccCCC------cHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCcc--ccchH--HHHHHHHHHHHHhcc
Confidence 99999999965322 123667788899999999999999999999875421 10000 022333455555444
Q ss_pred CCCchhHHHHHHHHHHHh
Q 000124 823 DMNGTDVADALEVVALLA 840 (2138)
Q Consensus 823 ~~~~~~~~~AL~ALa~La 840 (2138)
+.+...+.-|.-+.|.+-
T Consensus 701 ~~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 701 HQEGLAKFGACVAQGIMN 718 (963)
T ss_dssp SSCHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHh
Confidence 455667888888888775
No 112
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.70 E-value=0.00015 Score=97.72 Aligned_cols=324 Identities=15% Similarity=0.092 Sum_probs=216.2
Q ss_pred HHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHc---cCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHh
Q 000124 407 VQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLIT---MATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLL 483 (2138)
Q Consensus 407 vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~---sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL 483 (2138)
.+-.++.+|+-+..+.. .+++..|-..+. ++++.++.-|+.+|+.+..+... ..+..|...+
T Consensus 374 ~k~sA~aSLGlIh~g~~-------~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L 438 (963)
T 4ady_A 374 AKFTATASLGVIHKGNL-------LEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--------DTTDYLKNII 438 (963)
T ss_dssp HHHHHHHHHHHHTSSCT-------TTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHH
T ss_pred HHHHHHHHhhhhccCch-------HHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHH
Confidence 45667777777643211 245666666665 56778888888888887766321 2466777777
Q ss_pred cCCc--------hhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHH--hcCChhHHHH
Q 000124 484 GLSS--------EQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWIL--CCHSEDIRAC 553 (2138)
Q Consensus 484 ~s~d--------~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nL--s~~sd~~r~~ 553 (2138)
.+.+ +.+|..|+.+|+.....+.. ...+..|...|.+.+..+++.|+.+|+.+ +..+..
T Consensus 439 ~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-------eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~---- 507 (963)
T 4ady_A 439 VENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-------IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPE---- 507 (963)
T ss_dssp HHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHH----
T ss_pred cCccccccccccHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHH----
Confidence 6544 67888899998886542211 12467788888888777788888888866 332222
Q ss_pred HHHcCCcchhhhcc-ccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhc-CCCcchHHHHHHHHHHHHhhhcchHHHHh
Q 000124 554 VESAGAVPAFLWLL-KSGGPKGQDASAMALTKLIRAADSATINQLLALLL-GDSPSSKAHVIKVLGHVLTMALQEDLVQK 631 (2138)
Q Consensus 554 I~e~GaI~aLv~LL-kS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~-~~d~~V~~~A~~AL~~La~~~~~~d~v~~ 631 (2138)
++..|+..+ .+.+..+++.++.+|+.+... +.+.++.+++.|. +.++.++..+.-+++.-..-..
T Consensus 508 -----ai~~LL~~~~e~~~e~vrR~aalgLGll~~g-~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTG------- 574 (963)
T 4ady_A 508 -----AIHDMFTYSQETQHGNITRGLAVGLALINYG-RQELADDLITKMLASDESLLRYGGAFTIALAYAGTG------- 574 (963)
T ss_dssp -----HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT-CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSC-------
T ss_pred -----HHHHHHHHHhccCcHHHHHHHHHHHHhhhCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCC-------
Confidence 334454433 445678999999999987544 4467788888876 5666777666666654221112
Q ss_pred hhcccchhhHHHHhhc-CCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHH-hccCCHHHHHHHHHHHHHhcCC
Q 000124 632 GSAANKGLRSLVQVLN-SSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRL-LTSNTQMVATQSARALGALSRP 709 (2138)
Q Consensus 632 ~l~~~GaI~aLV~LLk-s~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~L-L~dgs~~Vk~~AA~ALanLa~s 709 (2138)
....++.|++.+. +.++.+|..|+.+|+.+..+++ ..++.++.+ ++++++.+|..|+.||+.++.+
T Consensus 575 ---n~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aG 642 (963)
T 4ady_A 575 ---NNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAG 642 (963)
T ss_dssp ---CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSS
T ss_pred ---CHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccC
Confidence 2235776777654 4588999999999999876443 345666664 4678999999999999999875
Q ss_pred CCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCC-chH-HHHHHhcCcHHHHHHHHhC--CCHHHHHHH
Q 000124 710 TKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSD-PDI-AAEVLLEDVVSALTRVLAE--GTSEGKKNA 785 (2138)
Q Consensus 710 ~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~-~e~-r~~Ii~~g~L~~LV~LL~~--~~~~Vr~~A 785 (2138)
++. ..++..|..++++.+..|+..|+.+|+.+... .+. ..++ .+.+..|..+..+ .++..+--+
T Consensus 643 n~~----------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rv--a~~l~~L~~~~~dk~~d~~~~fga 710 (963)
T 4ady_A 643 KGL----------QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQV--ADINKNFLSVITNKHQEGLAKFGA 710 (963)
T ss_dssp SCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTH--HHHHHHHHHHHHCSSSCHHHHHHH
T ss_pred CCc----------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHH--HHHHHHHHHHHhcccccHHHHHHH
Confidence 432 22678889999999999999999999998652 221 0011 1133446666654 456677777
Q ss_pred HHHHHHhh
Q 000124 786 SRALHQLL 793 (2138)
Q Consensus 786 a~AL~nL~ 793 (2138)
.-+.+-+.
T Consensus 711 ~iAqGll~ 718 (963)
T 4ady_A 711 CVAQGIMN 718 (963)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 66666553
No 113
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=98.54 E-value=7.8e-08 Score=128.96 Aligned_cols=111 Identities=23% Similarity=0.357 Sum_probs=83.6
Q ss_pred CCceEEEEEecccccccccCCCCceEEEEecCCC------Ccccc-ccccC-CCCCccc-ccee-eecCCCCCCeEEEEE
Q 000124 2008 LPGCLTVTIKRGNNLKQTMGTTNAFCRLTIGNGP------PRQTK-VVSHS-ISPEWKE-GFTW-AFDVPPKGQKLHIIC 2077 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~~~~~~~~~~~~~~~~~~~~------~~~t~-~~~~~-~~p~w~~-~f~~-~~~~~p~~~~l~~~~ 2077 (2138)
.||.|+|+|++|++|.+ ++.||||++.+ .|. ++||| ||++| +||+||| +|+| .+..| --..|+++|
T Consensus 676 ~~~~L~V~Visa~~L~~--~~~DPYV~V~l-~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~-el~~Lr~~V 751 (799)
T 2zkm_X 676 VATTLSITVISGQFLSE--RSVRTYVEVEL-FGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMP-ELASLRVAV 751 (799)
T ss_dssp TCEEEEEEEEEEESCCS--SCCCEEEEEEE-ECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSG-GGCEEEEEE
T ss_pred eeeeEEEEEEeccccCc--cCCCcEEEEEE-EecCCCcccceeecccccCCCCCCeeecceEEEEEEccC-CccEEEEEE
Confidence 47889999999999975 46899999999 441 23699 89865 9999999 6999 77655 445999999
Q ss_pred eecCCCCCcccceEEEEecceeecceecceeecCCCCCCCCCccceEEEEE
Q 000124 2078 KSKNTFGKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEII 2128 (2138)
Q Consensus 2078 ~~~~~~~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 2128 (2138)
|+.+ .+.+|.+.|.|+.+-. |- -.++|.+..++.=...+|.++++
T Consensus 752 ~D~d---~d~iG~~~ipl~~L~~-G~--r~v~L~~~~g~~~~~~~Lfv~i~ 796 (799)
T 2zkm_X 752 MEEG---NKFLGHRIIPINALNS-GY--HHLCLHSESNMPLTMPALFIFLE 796 (799)
T ss_dssp EETT---TEEEEEEEEEGGGBCC-EE--EEEEEECTTCCEEEEEEEEEEEE
T ss_pred EEeC---CCccceEeeehhhcCC-Cc--EEEeccCCCCCCCCceEEEEEEE
Confidence 9986 7899999999998753 42 25677665221112355666665
No 114
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Probab=98.54 E-value=7.2e-08 Score=128.73 Aligned_cols=115 Identities=17% Similarity=0.373 Sum_probs=86.6
Q ss_pred cCCceEEEEEecccccccccCCCCceEEEEecCCC-------CccccccccC-CCCCcccc-ceee-ecCCCCCCeEEEE
Q 000124 2007 CLPGCLTVTIKRGNNLKQTMGTTNAFCRLTIGNGP-------PRQTKVVSHS-ISPEWKEG-FTWA-FDVPPKGQKLHII 2076 (2138)
Q Consensus 2007 ~~~g~l~v~v~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~t~~~~~~-~~p~w~~~-f~~~-~~~~p~~~~l~~~ 2076 (2138)
..||.|+|+|++|++|.++ ..||||++.+ .|. ++|||||++| +||+|||+ |+|. +..| --..|.++
T Consensus 647 ~~~~~L~V~Visaq~L~~~--~~DPYV~V~l-~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~p-ela~Lrf~ 722 (816)
T 3qr0_A 647 VVAGTIEIKIISAQFLSDK--QISSYVEVEM-YGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLP-DLAVVRII 722 (816)
T ss_dssp SCCEEEEEEEEEEECCCSS--CCCEEEEEEE-ESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCG-GGCEEEEE
T ss_pred ccceEEEEEEEEcccCCCC--CCCCeEEEEE-eCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCC-CccEEEEE
Confidence 3578999999999999754 6899999999 442 2369999985 99999998 9998 7655 44799999
Q ss_pred EeecCCCCCcccceEEEEecceeecceecceeecCCCCCCCCCccceEEEEEecC
Q 000124 2077 CKSKNTFGKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIWSN 2131 (2138)
Q Consensus 2077 ~~~~~~~~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~ 2131 (2138)
||+++ .+.+|.+.|.|+.+-. | |. ..+|.+..++.=...+|.+++.=..
T Consensus 723 V~D~d---ddfiG~~~ipL~~L~~-G-yR-~vpL~~~~g~~~~~atLfv~i~~~~ 771 (816)
T 3qr0_A 723 VSEEN---GKFIGHRVMPLDGIKP-G-YR-HVPLRNESNRPLGLASVFAHIVAKD 771 (816)
T ss_dssp EEETT---SCEEEEEEEESTTCCC-E-EE-EEEEECTTSCEEEEEEEEEEEEEEE
T ss_pred EEecC---CCeeeEEEEEHHHcCC-c-ce-EEEEeCCCCCCCCceEEEEEEEEEe
Confidence 99985 6899999999998654 4 21 3667665222222356777776543
No 115
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Probab=98.53 E-value=8.4e-08 Score=128.68 Aligned_cols=114 Identities=18% Similarity=0.324 Sum_probs=86.2
Q ss_pred CCceEEEEEecccccccccCCCCceEEEEecCCC------CccccccccC-CCCCccc-cceee-ecCCCCCCeEEEEEe
Q 000124 2008 LPGCLTVTIKRGNNLKQTMGTTNAFCRLTIGNGP------PRQTKVVSHS-ISPEWKE-GFTWA-FDVPPKGQKLHIICK 2078 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~~~~~~~~~~~~~~~~~~~~------~~~t~~~~~~-~~p~w~~-~f~~~-~~~~p~~~~l~~~~~ 2078 (2138)
.|..|+|+|++|++|.++ ..||||++.+ .|. ++|||||++| +||+||| +|+|. +..| -...|.++||
T Consensus 723 ~~~~L~V~Visaq~L~~~--~~DPYV~V~l-~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~p-ela~Lrf~V~ 798 (885)
T 3ohm_B 723 VANALRVKVISGQFLSDR--KVGIYVEVDM-FGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLP-TLASLRIAAF 798 (885)
T ss_dssp CCEEEEEEEEEEESCCSS--CCCEEEEEEE-ESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCG-GGCEEEEEEE
T ss_pred cceEEEEEEEEeccCccc--CCCcEEEEEE-eCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcC-CcCEEEEEEE
Confidence 355899999999999764 6899999999 442 3479999886 9999999 59998 6655 4568999999
Q ss_pred ecCCCCCcccceEEEEecceeecceecceeecCCCCCCCCCccceEEEEEecC
Q 000124 2079 SKNTFGKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIWSN 2131 (2138)
Q Consensus 2079 ~~~~~~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~ 2131 (2138)
|++ .+.+|.+.|.|+.+-. | |. ..+|.+..+..=...+|.+++.-..
T Consensus 799 D~d---ddfiG~~~lpL~~L~~-G-yR-~vpL~~~~g~~l~~atLfv~i~~~~ 845 (885)
T 3ohm_B 799 EEG---GKFVGHRILPVSAIRS-G-YH-YVCLRNEANQPLCLPALLIYTEASD 845 (885)
T ss_dssp ETT---TEEEEEEEEETTTCCC-E-EE-EEEEECTTSCEEEEEEEEEEEEEEE
T ss_pred cCC---ccEEeeEEEEHHHcCC-C-ce-EEEecCCCCCccCceEEEEEEEEEe
Confidence 987 6899999999998653 4 22 3667665222212367777776554
No 116
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.31 E-value=1.6e-06 Score=115.43 Aligned_cols=194 Identities=14% Similarity=0.070 Sum_probs=146.5
Q ss_pred hhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHH-HHhccCCHHHHHHHHHHHHHhcCCCCcccch
Q 000124 638 GLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCM-RLLTSNTQMVATQSARALGALSRPTKTKTTN 716 (2138)
Q Consensus 638 aI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv-~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~ 716 (2138)
.+.++++.+++++++.|..|+.+|.+|+. ++..+..+...+++.+++ ++|.|.+..+|.+|+++|+||+... +.+.
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~--g~d~ 111 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEE--EADF 111 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS--CHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc--CchH
Confidence 46778888999999999999999999998 899999999999998765 5789999999999999999998622 2367
Q ss_pred hhhHHhcCChhhHHhhhhcCC---------------------HHHHHHHHHHHHHhhC-CchHHHHHHhcCcHHHHHHHH
Q 000124 717 KMSYIAEGDVKPLIKLAKTSS---------------------IDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTRVL 774 (2138)
Q Consensus 717 r~~I~~~G~V~~Lv~LL~s~s---------------------~~Vr~eAl~ALaNLa~-~~e~r~~Ii~~g~L~~LV~LL 774 (2138)
+..++..|++++|..+++... .++...++.+|.+|+. +.+....+...++++.|+.++
T Consensus 112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L 191 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL 191 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence 788999999999999986421 2344567888888876 555666788889999999877
Q ss_pred hCC---CHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhh---hHHHHHHhhccCCCCchhHHHHHHHHHHHh
Q 000124 775 AEG---TSEGKKNASRALHQLLKHFPVGDVLKGNAQCRF---VVLTLVDSLNAMDMNGTDVADALEVVALLA 840 (2138)
Q Consensus 775 ~~~---~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~g---av~~LV~LL~s~~~~~~~~~~AL~ALa~La 840 (2138)
.+. ..+++..|..+|..++.+. ..+...+...+ ....+..+.. ... ..+..+...|.++.
T Consensus 192 ~~~~~~~~~v~~~a~~~L~~ls~dn---~~~~~~i~~~~~~~~~~~ll~~~~-~~~--~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 192 ISADIAPQDIYEEAISCLTTLSEDN---LKVGQAITDDQETHVYDVLLKLAT-GTD--PRAVMACGVLHNVF 257 (684)
T ss_dssp HHHCCSCHHHHHHHHHHHHHHHTTC---HHHHHHHHTCCSSCHHHHHHHHHH-SSC--TTHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHHhccC---HHHHHHHHhcchHHHHHHHHHHhc-CCc--HHHHHHHHHHHhHh
Confidence 443 4689999999999999875 34444443322 2233333332 222 34677777777765
No 117
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.19 E-value=1.1e-05 Score=107.41 Aligned_cols=197 Identities=16% Similarity=0.120 Sum_probs=153.5
Q ss_pred hHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHH-HHHccCCHHHHHHHHHHHHHhhhc-cchhh
Q 000124 390 QIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLI-GLITMATADVREYLILSLTKLCRR-EVGIW 467 (2138)
Q Consensus 390 ~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV-~LL~sss~evq~~Aa~aL~~Ls~~-s~~~~ 467 (2138)
.+.|+| ..|++++.. .|..|+.+|++++.++...+.+...+++..++ .++...+.+++..|+.+|++++.+ ..+.+
T Consensus 35 ~i~Pll-~~L~S~~~~-~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 35 KILPVL-KDLKSPDAK-SRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp TTHHHH-HHHSSSCCS-HHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hHHHHH-HHcCCCCHH-HHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 454554 557777765 89999999999999999888888888887755 578889999999999999999976 35778
Q ss_pred HHhhhchhHHHHHHHhcCCch---------------------hhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhh
Q 000124 468 EAIGKREGIQLLISLLGLSSE---------------------QHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLE 526 (2138)
Q Consensus 468 ~~I~e~ggIp~LV~LL~s~d~---------------------~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLk 526 (2138)
..+.+.|++++|..+++.... .+...++.+|++|+..+.+....+...++++.|+.+|.
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI 192 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence 888999999999988753211 13346778899999877777778888899999999985
Q ss_pred hC---CHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhcc--ccCChhHHHHHHHHHHHHHHh
Q 000124 527 AG---SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLL--KSGGPKGQDASAMALTKLIRA 588 (2138)
Q Consensus 527 s~---d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LL--kS~~~evq~~Aa~AL~nLs~~ 588 (2138)
+. ..+++..++.+|++++.+++.....+.+.+....+..++ ..++...+..+++.|.|+...
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~~~ 259 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVFTS 259 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHhhh
Confidence 43 578999999999999998888777777766554332222 233444577888999998654
No 118
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.98 E-value=0.00014 Score=82.83 Aligned_cols=216 Identities=14% Similarity=0.121 Sum_probs=162.1
Q ss_pred cCCcchhhhccccCChhHHHHHHHHHHHHHHhhc--------hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhc-chH
Q 000124 557 AGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD--------SATINQLLALLLGDSPSSKAHVIKVLGHVLTMAL-QED 627 (2138)
Q Consensus 557 ~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e--------~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~-~~d 627 (2138)
.+.+..|..++.+.++.++.++..+|.++....+ .+.++.+++++++.++.+...+.+|++.+....+ +++
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 4467778899999999999999999999986621 3567899999999999999999999999986522 333
Q ss_pred HHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 000124 628 LVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALS 707 (2138)
Q Consensus 628 ~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa 707 (2138)
.+.+ .+.+|..+++++++-.++.++..+..+--.. ...+++..+..++.+.+.++|..+.+++.+++
T Consensus 112 ~y~K------l~~aL~dlik~~~~il~~eaae~Lgklkv~~-------~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia 178 (265)
T 3b2a_A 112 TFLK------AAKTLVSLLESPDDMMRIETIDVLSKLQPLE-------DSKLVRTYINELVVSPDLYTKVAGFCLFLNML 178 (265)
T ss_dssp HHHH------HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSC-------CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHG
T ss_pred HHHH------HHHHHHHHhcCCCchHHHHHHHHhCcCCccc-------chHHHHHHHHHHHhCCChhHHHHHHHHHHHhh
Confidence 3333 4789999999999999999999999883211 11256678888999999999999999999998
Q ss_pred CCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHH-HH-hCCCHHHHHHH
Q 000124 708 RPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTR-VL-AEGTSEGKKNA 785 (2138)
Q Consensus 708 ~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~-LL-~~~~~~Vr~~A 785 (2138)
..... ++ .-.+++.-+-.+|++.|+.+++.|+.+|-.+.+.|-....+.+--.+-..+. +. ..|.|.++.+|
T Consensus 179 ~~S~D-~~-----i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka 252 (265)
T 3b2a_A 179 NSSAD-SG-----HLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKA 252 (265)
T ss_dssp GGCSS-CC-----CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHH
T ss_pred cccCC-HH-----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHHHH
Confidence 72111 11 1245778888999999999999999999999987643222222223344443 33 57889998888
Q ss_pred HHHHHH
Q 000124 786 SRALHQ 791 (2138)
Q Consensus 786 a~AL~n 791 (2138)
-.+...
T Consensus 253 ~~v~~~ 258 (265)
T 3b2a_A 253 KKVSDL 258 (265)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 119
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.93 E-value=1.1e-06 Score=92.11 Aligned_cols=121 Identities=22% Similarity=0.239 Sum_probs=95.5
Q ss_pred cchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccc
Q 000124 636 NKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTT 715 (2138)
Q Consensus 636 ~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~ 715 (2138)
...++.++.+++++++.+|..|+.+|.++.. ..++.|+++|++.++.+|..|+++|+++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------
Confidence 3468889999999999999999998887643 136899999999999999999999999853
Q ss_pred hhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 000124 716 NKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQL 792 (2138)
Q Consensus 716 ~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL 792 (2138)
...++.|+.+|+++++.||..|+++|+++. ..++++.|+.++.+.++.+|..|+++|.++
T Consensus 72 -------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 -------ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp -------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 125899999999999999999999999886 245788999999999999999999998653
No 120
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.88 E-value=0.033 Score=76.82 Aligned_cols=694 Identities=10% Similarity=0.058 Sum_probs=314.5
Q ss_pred HhcCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcc-CCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcC
Q 000124 93 LRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEG 171 (2138)
Q Consensus 93 Lks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~s-ed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG 171 (2138)
+.+++++.|..|-..|..+-..++ +...+..+|.. .+.++|..|+.+|.+......+.-+...+..++..
T Consensus 16 ~~~~d~~~r~~A~~~L~~~~~~p~---------~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ 86 (971)
T 2x1g_F 16 FYRSNSQNQAITHEWLTDAEASPQ---------AWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQK 86 (971)
T ss_dssp HHTSTTTC----CHHHHHTTTSTH---------HHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHcCHH---------HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHH
Confidence 445666677777777777654443 33445666654 58999999999999886421111111123334444
Q ss_pred cHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccC------CHHHHHHHHHHHHHHHh
Q 000124 172 VVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSD------NAAAQSNAASLLARLML 245 (2138)
Q Consensus 172 ~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~------s~evq~~A~~aL~nLs~ 245 (2138)
.+..+.+.-. ..+.++.....+|..+....-..|.. .++.++..+.++ ++...+.++.+|..++.
T Consensus 87 ll~~l~~~~~----~~~~vr~kl~~~la~i~~~~~p~Wp~-----~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~E 157 (971)
T 2x1g_F 87 ILESIVRFAG----GPKIVLNRLCISLGAYIVHMLGEWPG-----AIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPE 157 (971)
T ss_dssp HHHHHHHHTT----SCHHHHHHHHHHHHHHHHHTTCC-----------HHHHHHHHTC----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC----CCHHHHHHHHHHHHHHHHHccccccH-----HHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHH
Confidence 5555555431 13568888888888887763214443 467777777764 46678888899988883
Q ss_pred h----cCCCcch-hhc--cchHHHHH----HHhccCCCH-------hHHHHHHHHHHHHhh--cCHHHHHHHHhcCCHHH
Q 000124 246 A----FGDSIPT-VID--SGAVKALV----QLVGQNNDI-------SVRASAADALEALSS--KSIKAKKAVVAADGVPV 305 (2138)
Q Consensus 246 ~----~~e~r~~-l~~--~GaL~~LL----~LL~s~sd~-------~vr~~Aa~aL~nLs~--~s~e~Rk~i~e~ggL~~ 305 (2138)
. .+..++. +.+ ...++.++ ..+....+. .++..+..++..... ..+.. .....++.
T Consensus 158 Ei~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~----~~~~ll~~ 233 (971)
T 2x1g_F 158 EAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE----GCVTITAV 233 (971)
T ss_dssp HHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG----GHHHHHHH
T ss_pred HHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc----ccccHHHH
Confidence 2 1111111 100 11233333 333321111 455566666654332 11110 11122333
Q ss_pred HHHhhc----CC----chhhhhhhhhhhhHHHHHHHHHHhhcCch-----h----HHHHhhh----h---cCCCC----c
Q 000124 306 LIGAIV----AP----SKECMQGQRGQALQGHATRALANIYGGMP-----A----LVVYLGE----L---SQSPR----L 357 (2138)
Q Consensus 306 LI~LL~----s~----s~e~mq~~~~~alqe~Al~ALanIsGgis-----~----LI~~L~e----l---L~~~~----s 357 (2138)
++. +. .+ +..+.. ......++.|+.|+..+.+.-. + +++.+.. . ....+ .
T Consensus 234 l~~-L~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~ 311 (971)
T 2x1g_F 234 LLE-VVHKCYWPCIHAGDGCMT-ADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNED 311 (971)
T ss_dssp HHH-HHHHHHSSSCC---CCCC-HHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSH
T ss_pred HHh-hhhhhccccccccccccC-cCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchH
Confidence 333 20 00 000000 0011266778888877764211 1 1111111 1 11111 1
Q ss_pred -hhhHHHHHHHHHHHH-HHhhcC--CCCCCcccchhhHHHHHHHHcCC----CChhHHHHHHHHHHHHhhcC--------
Q 000124 358 -AAPVADIIGALAYAL-MVFEQK--SGVDDEPFDARQIEDILVMLLKP----HDNKLVQERVLEAMASLYGN-------- 421 (2138)
Q Consensus 358 -s~~~A~~L~aLa~~l-~~l~q~--~~~~~~~~~~~~Ie~~LV~LL~s----~~~e~vr~~Aa~AL~~L~~n-------- 421 (2138)
......++..++... ..+... +......-.-..+.+.|..+... ..++.+...++..+..+...
T Consensus 312 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~ 391 (971)
T 2x1g_F 312 IIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDE 391 (971)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhccccc
Confidence 112223332222110 000000 00000000001222333443322 22334667777766665321
Q ss_pred --chhHHHHhh--hchHHHHHHHHccCCH---------------HHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHH
Q 000124 422 --IFLSQWVSH--AEAKKVLIGLITMATA---------------DVREYLILSLTKLCRREVGIWEAIGKREGIQLLISL 482 (2138)
Q Consensus 422 --~~~~~~L~e--~~gI~~LV~LL~sss~---------------evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~L 482 (2138)
...+..+.. ...++.++..+...+. ..+..+..+|..++..-++. +. .-.++.+.+.
T Consensus 392 ~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~---~l-~~~~~~l~~~ 467 (971)
T 2x1g_F 392 QKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDY---IL-EILAAMLDEA 467 (971)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTH---HH-HHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHH---HH-HHHHHHHHHH
Confidence 111111111 0223334444322111 23455556665555432110 00 0112222333
Q ss_pred hcC-----CchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHh---h--hCCHHHHHHHHHHHHHHhcCChhHHH
Q 000124 483 LGL-----SSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLL---E--AGSQKAREVAAHVLWILCCHSEDIRA 552 (2138)
Q Consensus 483 L~s-----~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LL---k--s~d~~vre~Aa~aL~nLs~~sd~~r~ 552 (2138)
+.+ .+...++.++.+++.++....+.. ...++.++.++ . +.++.+|..++++++.++..-.....
T Consensus 468 l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~ 542 (971)
T 2x1g_F 468 IADLQRHPTHWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA 542 (971)
T ss_dssp HHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----
T ss_pred HHhccCCCCcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH
Confidence 332 566789999999999987433221 12344444433 2 34889999999999988652111111
Q ss_pred HHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhch-------hhHHHHHHHhcCC--CcchHHHHHHHHHHHHhhh
Q 000124 553 CVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADS-------ATINQLLALLLGD--SPSSKAHVIKVLGHVLTMA 623 (2138)
Q Consensus 553 ~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~-------~aI~~Li~LL~~~--d~~V~~~A~~AL~~La~~~ 623 (2138)
.+ ...++.|+..+ + +.++..|+.++.+++..... ..+..+.+++... +.+.+..+.++++.++...
T Consensus 543 ~l--~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~ 617 (971)
T 2x1g_F 543 YI--PPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLL 617 (971)
T ss_dssp CH--HHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred HH--HHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhC
Confidence 11 12344555555 2 78999999999999965332 2344555666653 4567888899999887643
Q ss_pred cchHHHHhhhcccchhhHHHH----hhcCC--CHHHHHHHHHHHHHHhhc----Ch---h--------hhhhhhhCCCHH
Q 000124 624 LQEDLVQKGSAANKGLRSLVQ----VLNSS--NEENQEYAASVLADLFSM----RQ---D--------ICGSLATDEIVN 682 (2138)
Q Consensus 624 ~~~d~v~~~l~~~GaI~aLV~----LLks~--s~evre~Aa~ALanL~s~----~~---e--------~r~~Ive~GaV~ 682 (2138)
+..+. ...+ ...+++++. +++.. +++.+......+..|+.. .. + ..-.-....+++
T Consensus 618 ~~~~~-~~~~--~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 694 (971)
T 2x1g_F 618 RPEEI-PKYL--DIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMP 694 (971)
T ss_dssp CTTHH-HHHH--HHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHH
T ss_pred CHHHH-HHHH--HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHH
Confidence 31111 1110 112333333 33333 444445555555544321 00 0 000112235666
Q ss_pred HHHHHhcc--CCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhc--CCHHHHHHHHHHHHHhhC----C
Q 000124 683 PCMRLLTS--NTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT--SSIDAAETAVAALANLLS----D 754 (2138)
Q Consensus 683 ~Lv~LL~d--gs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s--~s~~Vr~eAl~ALaNLa~----~ 754 (2138)
.+..++.. .++.+.+.+.+++++++..... .. ...+++++..+.. .+.+. ..++..++.+.. +
T Consensus 695 ~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~--~~------~p~l~~~~~~l~~~~~~~~~-~~~l~l~~~~i~~~~~~ 765 (971)
T 2x1g_F 695 IFKRIAEMWVEEIDVLEAACSAMKHAITNLRS--SF------QPMLQDLCLFIVASFQTRCC-APTLEISKTAIVMFFKD 765 (971)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC----------CTHHHHHHHHHHHHCC--CC-HHHHHHHHHHHTTCCC-
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHhhhh--hc------cccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCC
Confidence 66677654 3678999999999997652111 11 1134555444421 11111 224555555543 2
Q ss_pred chHHHHHHh--cCcHHHHHHHHhC-------CCHHHHHHHHHHHHHhhhcCCCchhhhhhhh-hhhhHHHHHHhhccCCC
Q 000124 755 PDIAAEVLL--EDVVSALTRVLAE-------GTSEGKKNASRALHQLLKHFPVGDVLKGNAQ-CRFVVLTLVDSLNAMDM 824 (2138)
Q Consensus 755 ~e~r~~Ii~--~g~L~~LV~LL~~-------~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~-~~gav~~LV~LL~s~~~ 824 (2138)
+.....+.. ......+..++.. .++++++.....+.++....+. .+..... -...+...+..+.. .
T Consensus 766 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~--~~~~s~~~l~~i~~~~~~~l~~-~- 841 (971)
T 2x1g_F 766 EGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQ--VLEDKTLAYDRLVFYAQRGMTL-P- 841 (971)
T ss_dssp ----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGG--GGGCTTSCHHHHHHHHHHHHTS-S-
T ss_pred cchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcH--HHcCCcccHHHHHHHHHHHcCC-C-
Confidence 222222211 1122333333333 3788999999999998887642 1111100 12233344444432 2
Q ss_pred CchhHHHHHHHHHHHh
Q 000124 825 NGTDVADALEVVALLA 840 (2138)
Q Consensus 825 ~~~~~~~AL~ALa~La 840 (2138)
+......+...+..+-
T Consensus 842 ~~~~~~s~~~fl~~~i 857 (971)
T 2x1g_F 842 ESGAIRNSIQFLTHFV 857 (971)
T ss_dssp CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 2233556666555544
No 121
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.83 E-value=0.0001 Score=84.93 Aligned_cols=145 Identities=18% Similarity=0.145 Sum_probs=112.7
Q ss_pred hhhHHHHhh-cCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccch
Q 000124 638 GLRSLVQVL-NSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTN 716 (2138)
Q Consensus 638 aI~aLV~LL-ks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~ 716 (2138)
.++.|...+ ++.+..++..|+.++..|+..-.. .-.-.-..+++.++..+.+.++.+|..|..+|.++....+ .
T Consensus 57 i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~-~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----~ 131 (242)
T 2qk2_A 57 LVSALKKVITKDSNVVLVAMAGKCLALLAKGLAK-RFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----L 131 (242)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----H
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----H
Confidence 366677778 488999999999999999863111 1111223578999999999999999999999999986321 1
Q ss_pred hhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCC--ch--HHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 000124 717 KMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSD--PD--IAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQL 792 (2138)
Q Consensus 717 r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~--~e--~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL 792 (2138)
..+++.|...+.+.++.+|..++..|..+... ++ ....+ ...+|.|+.++.+.++++|..|..++..+
T Consensus 132 ------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l 203 (242)
T 2qk2_A 132 ------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTL 203 (242)
T ss_dssp ------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 12678888899999999999999999996542 33 12223 35889999999999999999999999999
Q ss_pred hhc
Q 000124 793 LKH 795 (2138)
Q Consensus 793 ~~~ 795 (2138)
+..
T Consensus 204 ~~~ 206 (242)
T 2qk2_A 204 IKL 206 (242)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 122
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.80 E-value=2.6e-06 Score=89.33 Aligned_cols=121 Identities=12% Similarity=0.120 Sum_probs=94.4
Q ss_pred cCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhccc
Q 000124 557 AGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAAN 636 (2138)
Q Consensus 557 ~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~ 636 (2138)
...++.++.+++++++.++..|+++|+++.. ..++.|+++|++.++.++..++++|+.+. ..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~----~~~~~L~~~L~d~~~~vR~~A~~aL~~~~--------------~~ 72 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD----EAFEPLLESLSNEDWRIRGAAAWIIGNFQ--------------DE 72 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS----TTHHHHHHGGGCSCHHHHHHHHHHHGGGC--------------SH
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc----hHHHHHHHHHcCCCHHHHHHHHHHHHhcC--------------CH
Confidence 5577888999999999999999999987742 23699999999999999999998887642 22
Q ss_pred chhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 000124 637 KGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGAL 706 (2138)
Q Consensus 637 GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanL 706 (2138)
..++.|+.+++++++.+|..|+++|.++.. .++++.|+.++++.++.+|..|+.+|.++
T Consensus 73 ~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 73 RAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 368999999999999999999999999864 34678899999999999999999998764
No 123
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.79 E-value=0.0028 Score=69.46 Aligned_cols=211 Identities=15% Similarity=0.190 Sum_probs=155.8
Q ss_pred cCCcchhhhccccCChhHHHHHHHHHHHHHHhhc---hhhHHHHHHHhc-CCCcchHHHHHHHHHHHHhhhcchHHHHhh
Q 000124 557 AGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD---SATINQLLALLL-GDSPSSKAHVIKVLGHVLTMALQEDLVQKG 632 (2138)
Q Consensus 557 ~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e---~~aI~~Li~LL~-~~d~~V~~~A~~AL~~La~~~~~~d~v~~~ 632 (2138)
...+..++.++.++-..+|.+|...+.+++..-. ...+..|+.+++ ++.-.......+++|.++.. .++.++.
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i--~Pe~v~~- 107 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE--KPELVKS- 107 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH--CHHHHHH-
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHh--CHHHHHh-
Confidence 4456778888998889999999999999985421 223445556654 34334445678888888754 3333333
Q ss_pred hcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc
Q 000124 633 SAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKT 712 (2138)
Q Consensus 633 l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~ 712 (2138)
.++.+..-.+-+++.+|.+...+|..+...+|+....+ +..+..++.+.+..-|..|..-+..++..
T Consensus 108 -----vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v-----~rdi~smltskd~~Dkl~aLnFi~alGen--- 174 (253)
T 2db0_A 108 -----MIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASI-----VRDFMSMLSSKNREDKLTALNFIEAMGEN--- 174 (253)
T ss_dssp -----HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHH-----HHHHHHHTSCSSHHHHHHHHHHHHTCCTT---
T ss_pred -----hHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHH-----HHHHHHHhcCCChHHHHHHHHHHHHHhcc---
Confidence 46777777778899999999999999998888766544 45677889988877777777666666541
Q ss_pred ccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-CchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHH
Q 000124 713 KTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQ 791 (2138)
Q Consensus 713 ~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~-~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~n 791 (2138)
..+ .-.-.++.|..||++.+.-||..|+++|.+++. +|..|+.+.+ .++=+.+.++.++.+..++|++
T Consensus 175 --~~~---yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~------kl~e~~D~S~lv~~~V~egL~r 243 (253)
T 2db0_A 175 --SFK---YVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIK------RLEELNDTSSLVNKTVKEGISR 243 (253)
T ss_dssp --THH---HHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHH------HHHHCCCSCHHHHHHHHHHHHH
T ss_pred --Ccc---ccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHH------HHHHhcCcHHHHHHHHHHHHHH
Confidence 112 123467889999999999999999999999997 6777765543 4555778889999999999998
Q ss_pred hhh
Q 000124 792 LLK 794 (2138)
Q Consensus 792 L~~ 794 (2138)
+..
T Consensus 244 l~l 246 (253)
T 2db0_A 244 LLL 246 (253)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 124
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.79 E-value=0.00042 Score=79.82 Aligned_cols=179 Identities=14% Similarity=0.138 Sum_probs=135.8
Q ss_pred hhhhccccCChhHHHHHHHHHHHHHHh-hc------hhhHHHHHHHhc-CCCcchHHHHHHHHHHHHhhhcchHHHHhhh
Q 000124 562 AFLWLLKSGGPKGQDASAMALTKLIRA-AD------SATINQLLALLL-GDSPSSKAHVIKVLGHVLTMALQEDLVQKGS 633 (2138)
Q Consensus 562 aLv~LLkS~~~evq~~Aa~AL~nLs~~-~e------~~aI~~Li~LL~-~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l 633 (2138)
.+.+.+.+.++..|+.++..|..+... ++ .+.++.|.+++. +.+..++..++.+++.++..... ++ ..
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~-~~-~~-- 94 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAK-RF-SN-- 94 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGG-GG-HH--
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhh-hH-HH--
Confidence 466778899999999999999999876 22 356788888994 88889999999999999854322 11 00
Q ss_pred cccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcc
Q 000124 634 AANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTK 713 (2138)
Q Consensus 634 ~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~ 713 (2138)
.-...++.++..+++.+..+|+.|..+|.+++... .. ...++.+...+++.++.+|..++..|..+.......
T Consensus 95 ~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~-~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~ 167 (242)
T 2qk2_A 95 YASACVPSLLEKFKEKKPNVVTALREAIDAIYAST-SL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPT 167 (242)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS-CH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC-CH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCC
Confidence 01235899999999999999999999999998732 11 235778888999999999999999999976532110
Q ss_pred cchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC
Q 000124 714 TTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS 753 (2138)
Q Consensus 714 d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~ 753 (2138)
..... .. ..+++.|+.++.+.+.++|..|..+++.++.
T Consensus 168 ~~~~~-~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 168 ALNKK-LL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp GCCHH-HH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CccHH-HH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 00111 11 2578999999999999999999999998863
No 125
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.75 E-value=0.4 Score=65.87 Aligned_cols=711 Identities=14% Similarity=0.088 Sum_probs=331.3
Q ss_pred CCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhc-CCHHHHHHHHHHHH
Q 000124 31 MDDPESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRS-GTPLAKVNVAATLS 109 (2138)
Q Consensus 31 med~~~~~~~V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks-~~~evr~~Aa~~L~ 109 (2138)
|+. ..+..+.++++.+..+ .+.+.|..|-.+|..+-..+ ++...+..+|.+ .++.+|.-|+.+|.
T Consensus 18 m~~--~~~~~l~~~l~~l~~~-~~~~~r~~A~~~L~~~~~~p-----------~~~~~~~~lL~~~~~~~vr~~aa~~L~ 83 (963)
T 2x19_B 18 ALD--FTVENVEKALHQLYYD-PNIENKNLAQKWLMQAQVSP-----------QAWHFSWQLLQPDKVPEIQYFGASALH 83 (963)
T ss_dssp CCC--CCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHST-----------THHHHHHHHTSTTSCHHHHHHHHHHHH
T ss_pred CCH--hhHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCH-----------HHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 554 2345677888775443 46778888999997765543 566677777754 57899999999997
Q ss_pred Hhcc------CchhHHHHHhcCChHHHHHhhcc---CCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhh
Q 000124 110 VLCK------DEDLRLKVLLGGCIPPLLSLLKS---ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQL 180 (2138)
Q Consensus 110 ~Ls~------~e~~r~~v~~~G~Ip~Lv~LL~s---ed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL 180 (2138)
+... .++.+..+. ..++..+.. .+..+|.+.+.+|..++....+.. =.+.++.|++.+
T Consensus 84 ~~i~~~w~~l~~~~~~~ir-----~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~--------Wp~~l~~l~~~~ 150 (963)
T 2x19_B 84 IKISRYWSDIPTDQYESLK-----AQLFTQITRFASGSKIVLTRLCVALASLALSMMPDA--------WPCAVADMVRLF 150 (963)
T ss_dssp HHHHHCGGGSCGGGHHHHH-----HHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTT--------STTHHHHHHHHH
T ss_pred HHHHhCHHhCCHHHHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccc--------cchHHHHHHHHH
Confidence 7642 233444443 233333333 368899999999999986321100 025788899988
Q ss_pred CCCCC--CChhHHHHHHHHHHHHhcCC-Cc-----hhHHHHH--hCcHHHHH----HhhccCC--HHHHHHHHHHHHHHH
Q 000124 181 NPKNK--QDNVVQGFVTGALRNLCGDK-DG-----YWRATLE--AGGVDIIV----GLLSSDN--AAAQSNAASLLARLM 244 (2138)
Q Consensus 181 ~s~s~--ed~~V~e~Al~aL~nLcs~~-e~-----r~~aI~e--~GGI~~Lv----~lL~s~s--~evq~~A~~aL~nLs 244 (2138)
.+... .+....+.++.+|..++..- +. +...+.+ ...++.++ ..+...+ ..+...+++++....
T Consensus 151 ~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi 230 (963)
T 2x19_B 151 QAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWV 230 (963)
T ss_dssp CC------CHHHHHHHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHH
T ss_pred hhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH
Confidence 65110 12345678888888887421 00 1011110 01233333 3443322 247777777775544
Q ss_pred hhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHH-----HHHHHHh--cCCHHHHHHhhcCCchhh
Q 000124 245 LAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIK-----AKKAVVA--ADGVPVLIGAIVAPSKEC 317 (2138)
Q Consensus 245 ~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e-----~Rk~i~e--~ggL~~LI~LL~s~s~e~ 317 (2138)
. ... ........++.+++.+. +...+..+..++..+...... .-..+.. -+-.+.+...+...+.+.
T Consensus 231 ~--~~~-~~~~~~~ll~~l~~~l~---~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~ 304 (963)
T 2x19_B 231 Q--LEV-PLQDCEALIQAAFAALQ---DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMET 304 (963)
T ss_dssp T--SSC-CGGGTHHHHHHHHHHTT---STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHH
T ss_pred c--CCC-CcccchHHHHHHHHHhC---CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHH
Confidence 2 111 11123456777777764 346788899999888764211 1111110 000111111111111110
Q ss_pred hhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCC--CCCcccchhhHHHHH
Q 000124 318 MQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSG--VDDEPFDARQIEDIL 395 (2138)
Q Consensus 318 mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~--~~~~~~~~~~Ie~~L 395 (2138)
.......+..+....... + .............+..+.. +.+++. ...+.+.. .+..+.
T Consensus 305 ---------~~~~~~l~~~~~~~~~~~---l---~~~~~~~~~~~~~l~~ll~----~~~~~~~~~~~~~v~~-~~l~fw 364 (963)
T 2x19_B 305 ---------SHGICRIAVALGENHSRA---L---LDQVEHWQSFLALVNMIMF----CTGIPGHYPVNETTSS-LTLTFW 364 (963)
T ss_dssp ---------HHHHHHHHHHHHHHHHHH---H---HHCGGGHHHHHHHHHHHHH----HHTCSSCTTTTCGGGG-GGHHHH
T ss_pred ---------HHHHHHHHHHHHHHhHHH---H---HcCccchHHHHHHHHHHHH----HHcCCCCCCchhhhhh-hhHHHH
Confidence 011111111111000000 0 0000000000011110000 000100 00000111 111111
Q ss_pred HHHcC----CCCh--hHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCH---------------HHHHHHHH
Q 000124 396 VMLLK----PHDN--KLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATA---------------DVREYLIL 454 (2138)
Q Consensus 396 V~LL~----s~~~--e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~---------------evq~~Aa~ 454 (2138)
..+.+ .... ...+......+. ..++.++..+...++ +.+..+..
T Consensus 365 ~~l~~~~~~~~~~~~~~~~~~~~~~l~---------------~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~ 429 (963)
T 2x19_B 365 YTLQDDILSFEAEKQAVYQQVYRPVYF---------------QLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISD 429 (963)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHH---------------HHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHH---------------HHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHH
Confidence 11111 0000 000000000000 112222222221111 12344445
Q ss_pred HHHHhhhccchhhHHhhhchhHHHHHHHh----cCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHh---hh
Q 000124 455 SLTKLCRREVGIWEAIGKREGIQLLISLL----GLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLL---EA 527 (2138)
Q Consensus 455 aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL----~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LL---ks 527 (2138)
+|..++...+.. +. .-.++.+.+.+ .+.+...++.++.+++.++....+.. ...++.++..+ .+
T Consensus 430 ~L~~~~~~~~~~---~l-~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~ 500 (963)
T 2x19_B 430 TLMYVYEMLGAE---LL-SNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISI 500 (963)
T ss_dssp HHHHHHHHHTHH---HH-HHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCC
T ss_pred HHHHHHHHccHH---HH-HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCC
Confidence 555444321100 00 11123333444 45577889999999999987533211 12234444443 23
Q ss_pred CCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc-------hhhHHHHHHH
Q 000124 528 GSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-------SATINQLLAL 600 (2138)
Q Consensus 528 ~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e-------~~aI~~Li~L 600 (2138)
+++.++..++++++.++..-......+ ...++.++..+.+ +.++..|+.++.+++.... ...+..+.++
T Consensus 501 ~~~~vr~~~~~~l~~~~~~l~~~~~~l--~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~ 576 (963)
T 2x19_B 501 SNVQLADTVMFTIGALSEWLADHPVMI--NSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDV 576 (963)
T ss_dssp CSHHHHHHHHHHHHHTHHHHHHCHHHH--TTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhCHHHH--HHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 478899999999998865211111211 4566777776654 8999999999999996532 2344555666
Q ss_pred hcCC--CcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhh----cCC-CHHHHHHHH---HHHHHHhhc-C-
Q 000124 601 LLGD--SPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVL----NSS-NEENQEYAA---SVLADLFSM-R- 668 (2138)
Q Consensus 601 L~~~--d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LL----ks~-s~evre~Aa---~ALanL~s~-~- 668 (2138)
+... +.+.+..+.++++.++...+ .+..... -...++.+...+ +.. +++.+.... ..|..+... .
T Consensus 577 l~~~~~~~~~~~~~~eai~~i~~~~~-~~~~~~~--~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~ 653 (963)
T 2x19_B 577 LMKQIHKTSQCMWLMQALGFLLSALQ-VEEILKN--LHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDI 653 (963)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTSC-HHHHHHH--HHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred hccCCCChHHHHHHHHHHHHHHhcCC-HHHHHHH--HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 6642 45678888999998875433 2222211 112344444433 222 555555333 333333321 0
Q ss_pred --hh---------------h--hhhhhhCCCHHHHHHHhcc--CCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChh
Q 000124 669 --QD---------------I--CGSLATDEIVNPCMRLLTS--NTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVK 727 (2138)
Q Consensus 669 --~e---------------~--r~~Ive~GaV~~Lv~LL~d--gs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~ 727 (2138)
+. . ...-.....++.+.+++.. ++..+.+.++.++..+.....+ .. ...++
T Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~--~~------~~~l~ 725 (963)
T 2x19_B 654 SHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLD--DF------APMVP 725 (963)
T ss_dssp SCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSS--TT------GGGHH
T ss_pred CcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcc--cc------cccHH
Confidence 00 0 0011122344445555532 4678888899999887652222 11 11344
Q ss_pred hHHhhh----hc-CCHHHHHHHHHHHHHhh----CCchHHHHHHh--cCcHHHHHHHHh---CCCHHHHHHHHHHHHHhh
Q 000124 728 PLIKLA----KT-SSIDAAETAVAALANLL----SDPDIAAEVLL--EDVVSALTRVLA---EGTSEGKKNASRALHQLL 793 (2138)
Q Consensus 728 ~Lv~LL----~s-~s~~Vr~eAl~ALaNLa----~~~e~r~~Ii~--~g~L~~LV~LL~---~~~~~Vr~~Aa~AL~nL~ 793 (2138)
+++..+ .. .... .+..+..+. .++.....+.. ...+.....++. ..++++++.....+..+.
T Consensus 726 ~~~~~l~~~~~~~~~~~----~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~ 801 (963)
T 2x19_B 726 QLCEMLGRMYSTIPQAS----ALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQAL 801 (963)
T ss_dssp HHHHHHHHHHHHSCCHH----HHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccH----HHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHH
Confidence 444432 22 1222 223333332 22211111111 112333333333 246999999999999999
Q ss_pred hcCCCchhhhhhhh-hhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000124 794 KHFPVGDVLKGNAQ-CRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2138)
Q Consensus 794 ~~~~~~d~i~~~i~-~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~ 841 (2138)
...+. .+..... -...+..++..+. ..+......++..+..+..
T Consensus 802 ~~~~~--~~~~~~~~~~~i~~~~~~~l~--~~~~~~~~~~l~~l~~l~~ 846 (963)
T 2x19_B 802 KRKPD--LFLCERLDVKAVFQCAVLALK--FPEAPTVKASCGFFTELLP 846 (963)
T ss_dssp HHCGG--GGGCTTSCHHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHGG
T ss_pred HhCcH--HHcCCcccHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHh
Confidence 87542 1211111 1334455566664 2344567778888877764
No 126
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.72 E-value=0.098 Score=72.20 Aligned_cols=539 Identities=11% Similarity=0.070 Sum_probs=257.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHh-----------cHHHHHHHhhhcCcHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 000124 43 KFLEQLHANMSSPQERELITMRILTIAKA-----------KKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVL 111 (2138)
Q Consensus 43 qlLe~L~~~s~s~~ere~AL~~L~~L~~~-----------~d~ak~lI~~~aGgVp~LV~LLks~~~evr~~Aa~~L~~L 111 (2138)
.++..+...+.+...|..|.-.|.+.... +++.|..|.+ .++..+.+.+..++...+.++..+
T Consensus 39 ~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~------~ll~~l~~~~~~ir~~l~~~ia~i 112 (960)
T 1wa5_C 39 TLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKK------EIVPLMISLPNNLQVQIGEAISSI 112 (960)
T ss_dssp HHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHH------HHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHH------HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34445545556677899999999987643 3445555543 345555556688999999999888
Q ss_pred ccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCC--CChhhHHHH--HHcCcHHHHHHh-------h
Q 000124 112 CKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLS--DDHVGMKIF--VTEGVVPTLWDQ-------L 180 (2138)
Q Consensus 112 s~~e~~r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~n--kd~~gre~I--veaG~Ip~Ll~L-------L 180 (2138)
+..+-.. .=-+.++.|++.+.++++..+..++.+|..++..-.. +++..+..+ +-....+.++++ +
T Consensus 113 a~~d~p~---~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l 189 (960)
T 1wa5_C 113 ADSDFPD---RWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQI 189 (960)
T ss_dssp HHHHSTT---TCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhCcc---chhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6432110 0025678899999887778889999999999863110 111112111 112234444443 3
Q ss_pred CCCCCCCh------hHHHHHHHHHHHHhcCCCchhHHHHH--hCcHHHHHHhhccC------C---------HHHHHHHH
Q 000124 181 NPKNKQDN------VVQGFVTGALRNLCGDKDGYWRATLE--AGGVDIIVGLLSSD------N---------AAAQSNAA 237 (2138)
Q Consensus 181 ~s~s~ed~------~V~e~Al~aL~nLcs~~e~r~~aI~e--~GGI~~Lv~lL~s~------s---------~evq~~A~ 237 (2138)
..+..... .+...++.++.++...+-.. .+.+ ...++.+...+... + ..++..++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~--~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~ 267 (960)
T 1wa5_C 190 TANENNKASLNILFDVLLVLIKLYYDFNCQDIPE--FFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQ 267 (960)
T ss_dssp TCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCH--HHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchH--HHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHH
Confidence 33221111 12233566666665432111 1111 11234444444321 0 24677888
Q ss_pred HHHHHHHhhcCCCcchhhccchHHHHHHHhcc----CCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCC
Q 000124 238 SLLARLMLAFGDSIPTVIDSGAVKALVQLVGQ----NNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAP 313 (2138)
Q Consensus 238 ~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s----~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~ 313 (2138)
.+|..+....++.-.. .-...+...+..+.. ..+..+...+...+..+... ...++.+...+-++.+++
T Consensus 268 ~~l~~l~~~~~~~f~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~-~~~~~~~~~~~~l~~li~----- 340 (960)
T 1wa5_C 268 ELVQLYTTRYEDVFGP-MINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRI-PKYFEIFNNESAMNNITE----- 340 (960)
T ss_dssp HHHHHHHHHCHHHHHH-HHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTS-HHHHGGGCSHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCc-HhHHHHHcCchHHHHHHH-----
Confidence 8888877432211000 011233333444421 22334455555555444332 211111100001111110
Q ss_pred chhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHH
Q 000124 314 SKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIED 393 (2138)
Q Consensus 314 s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~ 393 (2138)
.+....+.+. ....+.+.. .-+.
T Consensus 341 -----------------------------------------------------~~i~~~m~~~---~~d~e~w~~-dp~e 363 (960)
T 1wa5_C 341 -----------------------------------------------------QIILPNVTLR---EEDVELFED-DPIE 363 (960)
T ss_dssp -----------------------------------------------------HTHHHHHSCC---GGGTTTTTT-CHHH
T ss_pred -----------------------------------------------------HHhHHhcCCC---HHHHHHHhc-CHHH
Confidence 0000001110 000001111 0111
Q ss_pred HHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHc------cCCHHHHHHHHHHHHHhhhccchhh
Q 000124 394 ILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLIT------MATADVREYLILSLTKLCRREVGIW 467 (2138)
Q Consensus 394 ~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~------sss~evq~~Aa~aL~~Ls~~s~~~~ 467 (2138)
++..-++..+.+..|..+...|..++..-. +.+ -...++.+...+. +.+...++.|..+++.++.+.....
T Consensus 364 ~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~--~~v-~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~ 440 (960)
T 1wa5_C 364 YIRRDLEGSDTDTRRRACTDFLKELKEKNE--VLV-TNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITN 440 (960)
T ss_dssp HHHHHHHC----CHHHHHHHHHHHHHHHCH--HHH-HHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBT
T ss_pred HHHhccCcccccCcHHHHHHHHHHHHHHcc--hhH-HHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhcccc
Confidence 111111112222356666666666543321 111 0112233333343 3456677788888888874311000
Q ss_pred HHhh---h-chhHH----HHHHHhcCC---chhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHH
Q 000124 468 EAIG---K-REGIQ----LLISLLGLS---SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVA 536 (2138)
Q Consensus 468 ~~I~---e-~ggIp----~LV~LL~s~---d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~A 536 (2138)
.... . ....+ .++..+.+. ++.+|..++++++.++..-. .. .-...++.++..|.+.+..++..|
T Consensus 441 ~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~~--~l~~~l~~l~~~L~d~~~~V~~~A 516 (960)
T 1wa5_C 441 AGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--KA--QLIELMPILATFLQTDEYVVYTYA 516 (960)
T ss_dssp TBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--HH--HHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred CCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--HH--HHHHHHHHHHHHhCCCChhHHHHH
Confidence 0000 0 01112 233344555 78899999999999986421 11 123356778888888889999999
Q ss_pred HHHHHHHhcCCh-------h-HHHHHHH--cCCcchhhhccccCC---hh--HHHHHHHHHHHHHHhhc-------hhhH
Q 000124 537 AHVLWILCCHSE-------D-IRACVES--AGAVPAFLWLLKSGG---PK--GQDASAMALTKLIRAAD-------SATI 594 (2138)
Q Consensus 537 a~aL~nLs~~sd-------~-~r~~I~e--~GaI~aLv~LLkS~~---~e--vq~~Aa~AL~nLs~~~e-------~~aI 594 (2138)
+.+|.+++...+ . .+..+.. ...++.|+.++...+ +. ....+..++..+..... ...+
T Consensus 517 ~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~ 596 (960)
T 1wa5_C 517 AITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLL 596 (960)
T ss_dssp HHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHH
T ss_pred HHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 999999976321 1 0111100 123344455555531 11 23466666666654321 1233
Q ss_pred HHHHHHhc----C-CCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000124 595 NQLLALLL----G-DSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFS 666 (2138)
Q Consensus 595 ~~Li~LL~----~-~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s 666 (2138)
+.|+..+. + +++.....+.++++.+.... .++.... .....++.+...++....+..+.+..++..+..
T Consensus 597 ~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~-~~~~~~~--~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~ 670 (960)
T 1wa5_C 597 AQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYT-QRQNLPL--LVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVE 670 (960)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTS-CGGGHHH--HHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcC-CcchHHH--HHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHH
Confidence 44444443 2 23345566788888876541 1111111 123356777777776666667777777777664
No 127
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.63 E-value=0.00037 Score=79.39 Aligned_cols=212 Identities=14% Similarity=0.125 Sum_probs=159.2
Q ss_pred chhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHH
Q 000124 473 REGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRA 552 (2138)
Q Consensus 473 ~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~ 552 (2138)
.+.+..|+.++...|+.++.+++.+|..+-...++......-...++.++.++++.+..+.-.|..+|..|-.+.+--.+
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 34677899999999999999999999999875444333333445899999999999999999999999999764433222
Q ss_pred HHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHh-hchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHh
Q 000124 553 CVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA-ADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQK 631 (2138)
Q Consensus 553 ~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~-~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~ 631 (2138)
.+. -.+.+|..+.+++++-.+..++..|+.+.-. ...+.+..+..|+.+.+..++..+..++-++++...+++...
T Consensus 112 ~y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~- 188 (265)
T 3b2a_A 112 TFL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLT- 188 (265)
T ss_dssp HHH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGG-
T ss_pred HHH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHH-
Confidence 221 2356788888999999999999999999221 135688899999999999999999999998877655444332
Q ss_pred hhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHh--------ccCCHHHHHHH
Q 000124 632 GSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLL--------TSNTQMVATQS 699 (2138)
Q Consensus 632 ~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL--------~dgs~~Vk~~A 699 (2138)
+.+.-+-.++++.++.+++.|..++..+.+. | . .++.++.+.+++ ..|.|.++..|
T Consensus 189 -----~I~~eI~elL~~eD~~l~e~aLd~Le~ils~-p-i-----~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka 252 (265)
T 3b2a_A 189 -----LILDEIPSLLQNDNEFIVELALDVLEKALSF-P-L-----LENVKIELLKISRIVDGLVYREGAPIIRLKA 252 (265)
T ss_dssp -----GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS-C-C-----CSCCHHHHHHHHHHHHHGGGCSSCHHHHHHH
T ss_pred -----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-c-c-----cHhHHHHHHHHHHHHHHHHHhcCChhHHHHH
Confidence 3467777899999999999999999999873 2 2 244555554443 35666666554
No 128
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.60 E-value=0.0014 Score=80.37 Aligned_cols=277 Identities=14% Similarity=0.031 Sum_probs=156.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhc
Q 000124 436 VLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAA 515 (2138)
Q Consensus 436 ~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~a 515 (2138)
.++.++.+.+...++-.--++..++...++. | =++..+.+=++++|+-+|-.|+++|+++.. ++.- .
T Consensus 72 ~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~-----~ 138 (355)
T 3tjz_B 72 AMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDMTGKEDSYRGPAVRALCQITD--STML-----Q 138 (355)
T ss_dssp HHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTH-----H
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHH-----H
Confidence 3567888989888888888888877663332 1 246778888899999999999999999986 2221 1
Q ss_pred CCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHH
Q 000124 516 GGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATIN 595 (2138)
Q Consensus 516 GaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~ 595 (2138)
...+.+.+.|.+.++.+|..|+-+...|.....+. + .+.+..+-+++.+.++.++.+|..+|..+... +...+.
T Consensus 139 ~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~---v--~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~-d~~a~~ 212 (355)
T 3tjz_B 139 AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV---V--KRWVNEAQEAASSDNIMVQYHALGLLYHVRKN-DRLAVS 212 (355)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH---H--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT-CHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH---H--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh-chHHHH
Confidence 24566777888899999999999999997655442 2 35777888899999999999999999999754 333556
Q ss_pred HHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhh
Q 000124 596 QLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSL 675 (2138)
Q Consensus 596 ~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~I 675 (2138)
.|+.-+....-..+..-+..+..+.......+. -.....++.+...+++.++.+...|++++..+......
T Consensus 213 kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~----~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~----- 283 (355)
T 3tjz_B 213 KMISKFTRHGLKSPFAYCMMIRVASRQLEDEDG----SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK----- 283 (355)
T ss_dssp HHHHHHHSSCCSCHHHHHHHHHHHTCC---------------------CCCCCSSHHHHHHHHHHHTC------------
T ss_pred HHHHHHhcCCCcChHHHHHHHHHHHHhccccch----hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH-----
Confidence 666666543111111112223322222221100 01233577788888999999999999999988652221
Q ss_pred hhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHH
Q 000124 676 ATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAAL 748 (2138)
Q Consensus 676 ve~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~AL 748 (2138)
....++..|..++.+.++.+|-.|.+.|..+....|. .. . ..-..+.+++.+++..+..-|..+|
T Consensus 284 ~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~--~v----~--~~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 284 ELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPS--AV----T--ACNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp ----CCCTHHHHHHSSSSSSHHHHHHCC---------------------------------------------
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcH--HH----H--HHHHHHHHHccCCcHhHHHHHHHHh
Confidence 1134567788889999999999999888888764443 11 1 1334467778888777766665555
No 129
>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}
Probab=97.36 E-value=0.00018 Score=75.53 Aligned_cols=110 Identities=15% Similarity=0.243 Sum_probs=85.4
Q ss_pred ceEEEEEecccccccc--c-CCCCceEEEEecCCCC---ccc-cccccCCCCCccccceeeecCCCCCCeEEEEEeecCC
Q 000124 2010 GCLTVTIKRGNNLKQT--M-GTTNAFCRLTIGNGPP---RQT-KVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNT 2082 (2138)
Q Consensus 2010 g~l~v~v~~~~~~~~~--~-~~~~~~~~~~~~~~~~---~~t-~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~ 2082 (2138)
+.|.|-..+.+.-... . -.-||||.+.+|..-. -|| -.-+|+..|+||++|+--+.+ |..|+|.|+.+..
T Consensus 10 ~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~---Gr~l~i~Vfh~a~ 86 (138)
T 2enj_A 10 PFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK---GRVMQIIVKGKNV 86 (138)
T ss_dssp CCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS---SCEEEEEEECSSC
T ss_pred cceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC---CeEEEEEEEcCCC
Confidence 4577777777653211 0 2469999999976633 467 667889999999999998885 5899999995544
Q ss_pred CCCcccceEEEEeccee-----ecceecceeecCCCCCCCCCccceEEEEEecCC
Q 000124 2083 FGKSTLGKVTIQIDKVV-----TEGVYSGLFNLNHDNNKDSSSRTLEIEIIWSNR 2132 (2138)
Q Consensus 2083 ~~k~~~g~~~~~~~~v~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~ 2132 (2138)
+.+..|+|++.+++ .+|....+..|.|. +++.+.++|.--
T Consensus 87 ---~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP~-------Gkl~v~i~~~~e 131 (138)
T 2enj_A 87 ---DLISETTVELYSLAERCRKNNGKTEIWLELKPQ-------GRMLMNARYFLE 131 (138)
T ss_dssp ---SCCEEEEEESHHHHHHHHHTTTCEEEEEECBSS-------CEEEEEEEECCC
T ss_pred ---CeeeEEEEEHHHHHhhhccCCCceEEEEecccC-------cEEEEEEEEEEe
Confidence 99999999999999 56888888999988 556688898643
No 130
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.35 E-value=0.0024 Score=78.23 Aligned_cols=269 Identities=13% Similarity=0.109 Sum_probs=153.5
Q ss_pred hHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhh
Q 000124 593 TINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDIC 672 (2138)
Q Consensus 593 aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r 672 (2138)
....+++++.+.+...+....-++..++.. .++.+ + ++..|.+=++++++-+|-.|.++|+++.. ++..
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~--~~e~i---L----v~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~ 137 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCI--AEDVI---I----VTSSLTKDMTGKEDSYRGPAVRALCQITD--STML 137 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTT--SSCGG---G----GHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCC--HHHHH---H----HHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHH
Confidence 345678899998888887766666555433 11111 1 46777888888999999999999999986 3333
Q ss_pred hhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhh
Q 000124 673 GSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLL 752 (2138)
Q Consensus 673 ~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa 752 (2138)
+ ...+.+.+.+.|.++.||..|+.+..+|....++ ++ .+++..+-+++.+.++.|+..|+.+|..+.
T Consensus 138 ~-----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe-------~v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~ 204 (355)
T 3tjz_B 138 Q-----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD-------VV-KRWVNEAQEAASSDNIMVQYHALGLLYHVR 204 (355)
T ss_dssp H-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH-------HH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH-------HH-HHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 3 3456677888999999999999999999863332 12 368999999999999999999999999887
Q ss_pred CCchHHHHHHhcCcHHHHHHHHhCC---CHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhH
Q 000124 753 SDPDIAAEVLLEDVVSALTRVLAEG---TSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDV 829 (2138)
Q Consensus 753 ~~~e~r~~Ii~~g~L~~LV~LL~~~---~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~ 829 (2138)
.++. ..+..|+.-+.++ ++-.+-.-.+.+..++...+ +. .....++.+...++. .+....
T Consensus 205 ~~d~--------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~--~~-----~~~~~~~~l~~~L~~--~~~aVv 267 (355)
T 3tjz_B 205 KNDR--------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDED--GS-----RDSPLFDFIESCLRN--KHEMVV 267 (355)
T ss_dssp TTCH--------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC------------------------CCCCC--SSHHHH
T ss_pred hhch--------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccc--hh-----hHHHHHHHHHHHHcC--CChHHH
Confidence 6432 1455566655553 46556555555555554320 00 112234455555553 344568
Q ss_pred HHHHHHHHHHhhcccCCcccCCcccccccCCCchHHHHHhhhcCChHHHHHHHHHHHHhhccCCc-hh------hhhhhc
Q 000124 830 ADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPA-VL------GDFLMA 902 (2138)
Q Consensus 830 ~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~AieiL~~L~~~~~~-~~------~~~~~~ 902 (2138)
.+|..++-.+...... .......+|..++.++++.+|--|+..|..+...+|. ++ .+.+.+
T Consensus 268 yEa~k~I~~l~~~~~~------------~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d 335 (355)
T 3tjz_B 268 YEAASAIVNLPGCSAK------------ELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTD 335 (355)
T ss_dssp HHHHHHHTC-----------------------CCCTHHHHHHSSSSSSHHHHHHCC------------------------
T ss_pred HHHHHHHHhccCCCHH------------HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHccC
Confidence 8888887776542111 0122345677788889999999999999999888876 33 556677
Q ss_pred ccccHHHHHHHH
Q 000124 903 RSSSIGALADRI 914 (2138)
Q Consensus 903 ~~~~i~~La~~i 914 (2138)
..+.|+.+|--.
T Consensus 336 ~n~sI~t~Aitt 347 (355)
T 3tjz_B 336 ANRSIATLAITT 347 (355)
T ss_dssp ------------
T ss_pred CcHhHHHHHHHH
Confidence 777777776543
No 131
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.34 E-value=1.2 Score=61.30 Aligned_cols=518 Identities=10% Similarity=0.065 Sum_probs=254.6
Q ss_pred HHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccC--CHHHHHHHHHHHHHHHhhcCC------CcchhhccchHHHHHH
Q 000124 194 VTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSD--NAAAQSNAASLLARLMLAFGD------SIPTVIDSGAVKALVQ 265 (2138)
Q Consensus 194 Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~--s~evq~~A~~aL~nLs~~~~e------~r~~l~~~GaL~~LL~ 265 (2138)
|-..|.++-..+ |....|+..+.+. +..+|..|+-.|-|....+-. ....-.....=..++.
T Consensus 23 Ae~~L~~~~~~p----------~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~ 92 (960)
T 1wa5_C 23 SERNLRQLETQD----------GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVP 92 (960)
T ss_dssp HHHHHHHHHTST----------THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCC----------CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHH
Confidence 777777664322 2455677777543 568899999999888742211 1111111122334555
Q ss_pred HhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCch---
Q 000124 266 LVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMP--- 342 (2138)
Q Consensus 266 LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis--- 342 (2138)
.+... +..+|.....++..++.. .-+. .....++.|+..+.+++.. .+..++.+|..++....
T Consensus 93 ~l~~~-~~~ir~~l~~~ia~ia~~-d~p~---~Wp~ll~~L~~~l~s~~~~---------~~~~aL~~l~~i~~~~~~~~ 158 (960)
T 1wa5_C 93 LMISL-PNNLQVQIGEAISSIADS-DFPD---RWPTLLSDLASRLSNDDMV---------TNKGVLTVAHSIFKRWRPLF 158 (960)
T ss_dssp HHHHS-CHHHHHHHHHHHHHHHHH-HSTT---TCTTHHHHHHTTCCSSCTT---------HHHHHHHHHHHHHGGGTTSC
T ss_pred HHHhC-CHHHHHHHHHHHHHHHHh-hCcc---chhHHHHHHHHHhCCCCHH---------HHHHHHHHHHHHHHHHHHhh
Confidence 55433 367888888777777653 1110 1256677788877665422 34456666666553211
Q ss_pred ------------------hHHHHh---hhhcCCCCch----hhHHHHHHHHHHHHHHhhcCCCCCCcccch--hhHHHHH
Q 000124 343 ------------------ALVVYL---GELSQSPRLA----APVADIIGALAYALMVFEQKSGVDDEPFDA--RQIEDIL 395 (2138)
Q Consensus 343 ------------------~LI~~L---~elL~~~~ss----~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~--~~Ie~~L 395 (2138)
+++..+ ...++..... +.....+...+.....+. ... ....+.+ ....+.+
T Consensus 159 ~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~-~~~-~~~~~~~~~~~~~~~~ 236 (960)
T 1wa5_C 159 RSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFN-CQD-IPEFFEDNIQVGMGIF 236 (960)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHH-SSC-CCHHHHHTHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh-hcc-chHHHHHHHHHHHHHH
Confidence 011111 1123332211 111111111111111111 000 0111111 1222444
Q ss_pred HHHcCCC------C---h-----hHHHHHHHHHHHHhhcC-ch-hHHHHhhhchHHHHHHHHc-----cCCHHHHHHHHH
Q 000124 396 VMLLKPH------D---N-----KLVQERVLEAMASLYGN-IF-LSQWVSHAEAKKVLIGLIT-----MATADVREYLIL 454 (2138)
Q Consensus 396 V~LL~s~------~---~-----e~vr~~Aa~AL~~L~~n-~~-~~~~L~e~~gI~~LV~LL~-----sss~evq~~Aa~ 454 (2138)
..++... + . +.++.+++.++..+... ++ ....+ ...++..+..+. ..++.+...+..
T Consensus 237 ~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~al~ 314 (960)
T 1wa5_C 237 HKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMI--NEFIQITWNLLTSISNQPKYDILVSKSLS 314 (960)
T ss_dssp HHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHH--HHHHHHHHHHHHHCCSCTTSHHHHHHHHH
T ss_pred HHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCcCcHHHHHHHHH
Confidence 4444321 1 0 23567777777766432 11 11111 123444555553 345778888888
Q ss_pred HHHHhhhccchhhHHhhhchhHHHHH-----HHhc-----------------------CCchhhHHHHHHHHHHHhhcCc
Q 000124 455 SLTKLCRREVGIWEAIGKREGIQLLI-----SLLG-----------------------LSSEQHQEYAVQLIAILTEQVD 506 (2138)
Q Consensus 455 aL~~Ls~~s~~~~~~I~e~ggIp~LV-----~LL~-----------------------s~d~~Vr~~Aa~aL~nLa~~s~ 506 (2138)
.|..++.. +..+..+.....++.++ ..+. +.....|..|..+|..|+...+
T Consensus 315 fl~~~~~~-~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~ 393 (960)
T 1wa5_C 315 FLTAVTRI-PKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE 393 (960)
T ss_dssp HHHHHHTS-HHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH
T ss_pred HHHHHhCc-HhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc
Confidence 88887654 22222221113333333 2221 1112467788888888887432
Q ss_pred hhHHHHHhcCCchHHHHHhh------hCCHHHHHHHHHHHHHHhcCCh-------------hHHHHHHHcCCcchhhhcc
Q 000124 507 DSKWAITAAGGIPPLVQLLE------AGSQKAREVAAHVLWILCCHSE-------------DIRACVESAGAVPAFLWLL 567 (2138)
Q Consensus 507 e~r~~I~~aGaIp~LV~LLk------s~d~~vre~Aa~aL~nLs~~sd-------------~~r~~I~e~GaI~aLv~LL 567 (2138)
+ .+. .-.++.+.+.+. +.+...|+.|..+++.++.... ....++. ..++..+
T Consensus 394 ~---~v~-~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~-----~~v~p~l 464 (960)
T 1wa5_C 394 V---LVT-NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFT-----KEIAPDL 464 (960)
T ss_dssp H---HHH-HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHH-----HHTHHHH
T ss_pred h---hHH-HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHH-----HHhHHHh
Confidence 1 111 012233333344 3467789999999999964211 1111110 0111222
Q ss_pred ccC---ChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHH
Q 000124 568 KSG---GPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQ 644 (2138)
Q Consensus 568 kS~---~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~ 644 (2138)
.+. .+.+|..++++++.++.. . .++... ..++.++.
T Consensus 465 ~~~~~~~p~vr~~a~~~lg~~~~~----------------------------------~-~~~~l~------~~l~~l~~ 503 (960)
T 1wa5_C 465 TSNNIPHIILRVDAIKYIYTFRNQ----------------------------------L-TKAQLI------ELMPILAT 503 (960)
T ss_dssp HCSSCSCHHHHHHHHHHHHHTGGG----------------------------------S-CHHHHH------HHHHHHHH
T ss_pred cCCCCCCceehHHHHHHHHHHHhh----------------------------------C-CHHHHH------HHHHHHHH
Confidence 344 667777777777776532 1 011111 13677777
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhcCh-------hh-hhhhhh--CCCHHHHHHHhccCC---HH--HHHHHHHHHHHhcCC
Q 000124 645 VLNSSNEENQEYAASVLADLFSMRQ-------DI-CGSLAT--DEIVNPCMRLLTSNT---QM--VATQSARALGALSRP 709 (2138)
Q Consensus 645 LLks~s~evre~Aa~ALanL~s~~~-------e~-r~~Ive--~GaV~~Lv~LL~dgs---~~--Vk~~AA~ALanLa~s 709 (2138)
.+.+++..++..|+.+|.+++.... +. +..+.. ...+..|..++.... +. ....+..+|..+...
T Consensus 504 ~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~ 583 (960)
T 1wa5_C 504 FLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQT 583 (960)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHH
T ss_pred HhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHH
Confidence 7888889999999999999987311 21 222211 245566666776641 11 234566666665431
Q ss_pred CCcccchhhhHHhcCChhhHHhhhhc-----CCHHHHHHHHHHHHHhhC--CchHHHHHHhcCcHHHHHHHHhCCCHHHH
Q 000124 710 TKTKTTNKMSYIAEGDVKPLIKLAKT-----SSIDAAETAVAALANLLS--DPDIAAEVLLEDVVSALTRVLAEGTSEGK 782 (2138)
Q Consensus 710 ~~~~d~~r~~I~~~G~V~~Lv~LL~s-----~s~~Vr~eAl~ALaNLa~--~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr 782 (2138)
..+ .... .-...++.|+..+.. .+...+..++.+++.++. +++....+ .+..+|.+...+.....+..
T Consensus 584 ~~~--~~~p--~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~-~~~~~p~~~~iL~~~~~~~~ 658 (960)
T 1wa5_C 584 SED--SIQP--LFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVFSEDIQEFI 658 (960)
T ss_dssp HTT--TTGG--GHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHTTCTTTH
T ss_pred HHH--hhhh--HHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHHHHHHhhhHhhH
Confidence 111 1111 011244445444432 356677678888888765 33333332 34567888888877666677
Q ss_pred HHHHHHHHHhhhc
Q 000124 783 KNASRALHQLLKH 795 (2138)
Q Consensus 783 ~~Aa~AL~nL~~~ 795 (2138)
..+..+++.+...
T Consensus 659 ~~~~~i~~~l~~~ 671 (960)
T 1wa5_C 659 PYVFQIIAFVVEQ 671 (960)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7777777777654
No 132
>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A
Probab=97.34 E-value=0.00022 Score=74.00 Aligned_cols=107 Identities=14% Similarity=0.262 Sum_probs=81.2
Q ss_pred ceEEEEEeccccc--ccccCCCCceEEEEecCCC---Cccc-cccccCCCCCccccceeeecCCCCCCeEEEEEeecCCC
Q 000124 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGP---PRQT-KVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTF 2083 (2138)
Q Consensus 2010 g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~t-~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~ 2083 (2138)
+.|.|-..+.+.= ...=-.-||||.+.++..- .-|| -.-+|+.+|.||++|+--+.+ |..|+|.|+.+..
T Consensus 6 ~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~---Gr~l~i~Vfh~a~- 81 (126)
T 1yrk_A 6 PFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE---GRVIQIVLMRAAE- 81 (126)
T ss_dssp CEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT---TCEEEEEEEEETT-
T ss_pred ccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC---CEEEEEEEEcCCC-
Confidence 4577777776642 2110136999999996433 2265 667889999999999999885 5899999996555
Q ss_pred CCcccceEEEEeccee-----ecceecceeecCCCCCCCCCccceEEEEEe
Q 000124 2084 GKSTLGKVTIQIDKVV-----TEGVYSGLFNLNHDNNKDSSSRTLEIEIIW 2129 (2138)
Q Consensus 2084 ~k~~~g~~~~~~~~v~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w 2129 (2138)
+.+..|+|++.+++ .+|....+..|.|. +++.+.++|
T Consensus 82 --~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP~-------Gkl~~~i~~ 123 (126)
T 1yrk_A 82 --EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQPQ-------AKVLMSVQY 123 (126)
T ss_dssp --EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBSS-------CEEEEEEEE
T ss_pred --CeeeEEEEEHHHHHhhhccCCCceEEEEecccC-------cEEEEEEEE
Confidence 99999999999999 56888888899987 555577776
No 133
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.0034 Score=73.31 Aligned_cols=184 Identities=9% Similarity=0.081 Sum_probs=132.6
Q ss_pred hhhccccCChhHHHHHHHHHHH-HHHh-h-------c-hhhHHHHHHHh-cCCCcchHHHHHHHHHHHHhhhc--chH-H
Q 000124 563 FLWLLKSGGPKGQDASAMALTK-LIRA-A-------D-SATINQLLALL-LGDSPSSKAHVIKVLGHVLTMAL--QED-L 628 (2138)
Q Consensus 563 Lv~LLkS~~~evq~~Aa~AL~n-Ls~~-~-------e-~~aI~~Li~LL-~~~d~~V~~~A~~AL~~La~~~~--~~d-~ 628 (2138)
+.+.+.+.++.-|..+...|.. +... + + .+.+..|.+.+ ++.+..++..++++++.++.... .-. .
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 3456788899999999999999 7633 1 1 34677888888 68888889999999999985433 111 1
Q ss_pred HHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 000124 629 VQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2138)
Q Consensus 629 v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~ 708 (2138)
.. .-.++.++..+++....+++.+..+|..++...++....-.-...++.|...+++.++.+|..+...|..+..
T Consensus 101 y~-----~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~ 175 (249)
T 2qk1_A 101 YV-----SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMK 175 (249)
T ss_dssp HH-----HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 11 1258899999999999999999999999987422111000012467788889999999999999999999986
Q ss_pred CCCcccchhh-hHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhh
Q 000124 709 PTKTKTTNKM-SYIAEGDVKPLIKLAKTSSIDAAETAVAALANLL 752 (2138)
Q Consensus 709 s~~~~d~~r~-~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa 752 (2138)
..+..+ ... ......+++.|.+++.+.+.+||..|..+|+.+.
T Consensus 176 ~~~~~~-~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 176 EEKDGY-STLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp HCCSCS-HHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HcCCcc-hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 322100 111 1112568899999999999999999999998875
No 134
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.0018 Score=75.56 Aligned_cols=186 Identities=8% Similarity=0.101 Sum_probs=131.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHH-hhhccchhhHHhhh-chhHHHHHHHh-cCCchhhHHHHHHHHHHHhhcCchhHHH-H
Q 000124 437 LIGLITMATADVREYLILSLTK-LCRREVGIWEAIGK-REGIQLLISLL-GLSSEQHQEYAVQLIAILTEQVDDSKWA-I 512 (2138)
Q Consensus 437 LV~LL~sss~evq~~Aa~aL~~-Ls~~s~~~~~~I~e-~ggIp~LV~LL-~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~-I 512 (2138)
+...+.+.+...|..+...|.. +..+.+.......+ ...+..|...+ +..+..++..|+.+|+.|+.+-...... -
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 3455678889999999999998 87543322210111 23467788888 7889999999999999998632201111 2
Q ss_pred HhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc--
Q 000124 513 TAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-- 590 (2138)
Q Consensus 513 ~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e-- 590 (2138)
.....+|.++..+++..+.+++.+..+|..+...-+.....-.=...++.|+..+++.++.++..+..+|..+.....
T Consensus 101 y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~ 180 (249)
T 2qk1_A 101 YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDG 180 (249)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCc
Confidence 223467888898998899999999988888865221000000001234566778888899999999999999986532
Q ss_pred ---------hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhh
Q 000124 591 ---------SATINQLLALLLGDSPSSKAHVIKVLGHVLTM 622 (2138)
Q Consensus 591 ---------~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~ 622 (2138)
...+|.|.+++.+.+.+++..+.++++.+...
T Consensus 181 ~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 181 YSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp SHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999988644
No 135
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.16 E-value=1.9 Score=59.73 Aligned_cols=225 Identities=12% Similarity=0.086 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcC---CHHHHHHHHHHHHHhcc-
Q 000124 38 MSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSG---TPLAKVNVAATLSVLCK- 113 (2138)
Q Consensus 38 ~~~V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~---~~evr~~Aa~~L~~Ls~- 113 (2138)
+..|.+.++...+...++..|.+|-.+|..+-..+ ++......+|... ++.+|.-|+.+|.+...
T Consensus 5 ~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp-----------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~ 73 (980)
T 3ibv_A 5 AQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSS-----------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVRE 73 (980)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHST-----------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcCh-----------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHh
Confidence 46688888766666678889999999998876654 4555566667553 68999999999965433
Q ss_pred -Cch----hHHHHHhcCChHHHHHhhc-cCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCC
Q 000124 114 -DED----LRLKVLLGGCIPPLLSLLK-SESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQD 187 (2138)
Q Consensus 114 -~e~----~r~~v~~~G~Ip~Lv~LL~-sed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed 187 (2138)
.++ .+..+. .-.+..+.+.-. .++..++.+.+.+|..+.....+.. =.+.++.+++++..++ .
T Consensus 74 l~~e~~~~~~~~lr-~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~--------Wp~~i~~l~~~~~~~~-~- 142 (980)
T 3ibv_A 74 WNNESNLLELQMIR-DSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSN--------WNDFFASLQGVIAASS-Q- 142 (980)
T ss_dssp CCTTTSHHHHHHHH-HHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTT--------CTTHHHHHHHHHHHHC-C-
T ss_pred CChhhhHHHHHHHH-HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCccc--------CchHHHHHHHHhcCCC-h-
Confidence 223 333332 122233333111 2467789999999988875311100 0247777888876533 1
Q ss_pred hhHHHHHHHHHHHHhcCC---C--------ch----hHHHHHhC---cHHHHHHhh----ccCCHHHHHHHHHHHHHHHh
Q 000124 188 NVVQGFVTGALRNLCGDK---D--------GY----WRATLEAG---GVDIIVGLL----SSDNAAAQSNAASLLARLML 245 (2138)
Q Consensus 188 ~~V~e~Al~aL~nLcs~~---e--------~r----~~aI~e~G---GI~~Lv~lL----~s~s~evq~~A~~aL~nLs~ 245 (2138)
.......+++|..++..- . .| +..+.+.. .++.+..+| .+.+++++..++.+|.....
T Consensus 143 ~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~ 222 (980)
T 3ibv_A 143 SEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVS 222 (980)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHh
Confidence 123445566666443320 0 11 12232220 133333333 33667788888888877663
Q ss_pred hcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhc
Q 000124 246 AFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSK 289 (2138)
Q Consensus 246 ~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~ 289 (2138)
- -....+.+...++.+...+. +...+..|.++|..+..+
T Consensus 223 w--i~~~~i~~~~ll~~l~~~L~---~~~~r~~A~ecL~ei~~k 261 (980)
T 3ibv_A 223 W--ININLIVNEPCMNLLYSFLQ---IEELRCAACETMTEIVNK 261 (980)
T ss_dssp T--SCHHHHHCHHHHHHHHHHTT---SHHHHHHHHHHHHHHHHS
T ss_pred h--cCHHhhhcchHHHHHHHHcC---ChHHHHHHHHHHHHHHHc
Confidence 1 11233456678888888886 368899999999999775
No 136
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.09 E-value=0.71 Score=63.62 Aligned_cols=133 Identities=11% Similarity=0.080 Sum_probs=84.5
Q ss_pred CCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHh---c--cCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhc
Q 000124 649 SNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLL---T--SNTQMVATQSARALGALSRPTKTKTTNKMSYIAE 723 (2138)
Q Consensus 649 ~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL---~--dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~ 723 (2138)
.++..++.+..++..++.+-.+.. ...++.++.++ . +.++.+|..++++++.++.-... .. . .-.
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~--~~-~--~l~ 545 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLME--NP-A--YIP 545 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC---------CHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhc--CH-H--HHH
Confidence 577899999999999976422211 12334444433 3 45889999999999998752111 00 0 011
Q ss_pred CChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHH--hcCcHHHHHHHHhCC--CHHHHHHHHHHHHHhhhcC
Q 000124 724 GDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVL--LEDVVSALTRVLAEG--TSEGKKNASRALHQLLKHF 796 (2138)
Q Consensus 724 G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii--~~g~L~~LV~LL~~~--~~~Vr~~Aa~AL~nL~~~~ 796 (2138)
.+++.|+..++ +.|+..|+.++.+++.+ .+..+. -+..+..+..++..+ +...+..+..+++.+....
T Consensus 546 ~vl~~l~~~l~---~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~ 617 (971)
T 2x1g_F 546 PAINLLVRGLN---SSMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLL 617 (971)
T ss_dssp HHHHHHHHHHH---SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhC---hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhC
Confidence 24555666663 67899999999999842 222222 234556666777763 5789999999999998754
No 137
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=96.98 E-value=0.098 Score=57.66 Aligned_cols=213 Identities=14% Similarity=0.185 Sum_probs=150.1
Q ss_pred hchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhh-hCCHHHHHHHHHHHHHHhcCChhH
Q 000124 472 KREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLE-AGSQKAREVAAHVLWILCCHSEDI 550 (2138)
Q Consensus 472 e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLk-s~d~~vre~Aa~aL~nLs~~sd~~ 550 (2138)
+...+..++.+|.++-..+|.+|+..+.+++...++.... .+..|.-+++ +..-......+.+++.++..+.+.
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~ 104 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL 104 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence 4556788999999888899999999999998754443222 2334444544 445555556678888887644432
Q ss_pred HHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHh-hc--hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchH
Q 000124 551 RACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA-AD--SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQED 627 (2138)
Q Consensus 551 r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~-~e--~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d 627 (2138)
- .+.+|.+..-.+-+++.++-+...+|..+... +. ..+...+..++.+.+..-+..+..-++.+. ..+..
T Consensus 105 v-----~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alG--en~~~ 177 (253)
T 2db0_A 105 V-----KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMG--ENSFK 177 (253)
T ss_dssp H-----HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCC--TTTHH
T ss_pred H-----HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh--ccCcc
Confidence 2 23567777777889999999999999999865 21 345677888888666544444433333221 12222
Q ss_pred HHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 000124 628 LVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALS 707 (2138)
Q Consensus 628 ~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa 707 (2138)
.+ ...++.|..++.+.++-+|..|+.+|.+++..++..|..+ ..-++-+.|.++.++...-.+|..+.
T Consensus 178 yv------~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii------~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 178 YV------NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVV------IKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp HH------GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHH------HHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred cc------CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHH------HHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 22 3368999999999999999999999999999888866654 33455678888888888888888876
Q ss_pred C
Q 000124 708 R 708 (2138)
Q Consensus 708 ~ 708 (2138)
.
T Consensus 246 l 246 (253)
T 2db0_A 246 L 246 (253)
T ss_dssp H
T ss_pred H
Confidence 4
No 138
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.82 E-value=0.044 Score=74.96 Aligned_cols=289 Identities=15% Similarity=0.104 Sum_probs=185.5
Q ss_pred HccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCch-hHHHHHhcCCch
Q 000124 441 ITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDD-SKWAITAAGGIP 519 (2138)
Q Consensus 441 L~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e-~r~~I~~aGaIp 519 (2138)
+..++......++..+..+..++... .....+.+..|...+...... +.|+.++..|+..... .....+-.+.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~ 98 (986)
T 2iw3_A 23 LSVATADNRHEIASEVASFLNGNIIE--HDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVP 98 (986)
T ss_dssp HTTCCTTTHHHHHHHHHHHHTSSCSS--SSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHH
T ss_pred ccccchhHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHH
Confidence 44434455667777777766542111 112236677888888776555 8999999999853321 112233335778
Q ss_pred HHHHHhhhCCHHHHHHHHHHHHHHhcC-ChhHHHHHHHcCCcchhhhccccC-ChhHHHHHHHHHHHHHHhh-c------
Q 000124 520 PLVQLLEAGSQKAREVAAHVLWILCCH-SEDIRACVESAGAVPAFLWLLKSG-GPKGQDASAMALTKLIRAA-D------ 590 (2138)
Q Consensus 520 ~LV~LLks~d~~vre~Aa~aL~nLs~~-sd~~r~~I~e~GaI~aLv~LLkS~-~~evq~~Aa~AL~nLs~~~-e------ 590 (2138)
.++..+.+....+|..|..++..+... +...- ...+|.|+..+++. ....+..|..++..|.... +
T Consensus 99 ~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~ 173 (986)
T 2iw3_A 99 AICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRM 173 (986)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhc
Confidence 888888888889999888777777542 22111 23577888777655 5889999999999998653 2
Q ss_pred hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChh
Q 000124 591 SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQD 670 (2138)
Q Consensus 591 ~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e 670 (2138)
.+.||.+.+.+.+..++|+..+..++..++...++.|. ...++.|+..+.+++. +.+ ++..|..-+.- .+
T Consensus 174 ~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-------~~~~~~~~~~~~~p~~-~~~-~~~~l~~~tfv-~~ 243 (986)
T 2iw3_A 174 PELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-------ERFIPSLIQCIADPTE-VPE-TVHLLGATTFV-AE 243 (986)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-------GGGHHHHHHHHHCTTH-HHH-HHHHHTTCCCC-SC
T ss_pred cchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-------hhhHHHHHHHhcChhh-hHH-HHHHhhcCeeE-ee
Confidence 46789999999999999999999999988877776653 3368999998877643 333 34333332220 00
Q ss_pred hhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhc-CCHHHHHHHHHHHH
Q 000124 671 ICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT-SSIDAAETAVAALA 749 (2138)
Q Consensus 671 ~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s-~s~~Vr~eAl~ALa 749 (2138)
.- .-.=.=.+|-|.+-|++.+..+++.++-.+.|+++-... ..-..-.-...+|.|.+.... .++++|+-|..|+.
T Consensus 244 v~-~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~--~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~ 320 (986)
T 2iw3_A 244 VT-PATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVED--PQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALK 320 (986)
T ss_dssp CC-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCC--HHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHH
T ss_pred ec-chhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCC--HHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHH
Confidence 00 000011345666677888999999999999999982221 222222223344444444433 68999998888877
Q ss_pred Hh
Q 000124 750 NL 751 (2138)
Q Consensus 750 NL 751 (2138)
.|
T Consensus 321 ~l 322 (986)
T 2iw3_A 321 TL 322 (986)
T ss_dssp HH
T ss_pred HH
Confidence 77
No 139
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=96.80 E-value=0.13 Score=64.81 Aligned_cols=354 Identities=12% Similarity=0.063 Sum_probs=194.2
Q ss_pred cCcHHHHHHHHhc-CCHHHHHHHHHHHHHhccCch---hHHHH-HhcCC-hHHHHH-hhccCCHHHHHHHHHHHHHhhcC
Q 000124 83 AQAMPLFISILRS-GTPLAKVNVAATLSVLCKDED---LRLKV-LLGGC-IPPLLS-LLKSESTDTRKAAAEALYEVSSG 155 (2138)
Q Consensus 83 aGgVp~LV~LLks-~~~evr~~Aa~~L~~Ls~~e~---~r~~v-~~~G~-Ip~Lv~-LL~sed~eVr~aAa~AL~nLS~~ 155 (2138)
..++..++.+|+. .+.++..+.+.++..|..++. .+..+ ....- ...+.. .+..+++-....+..++.-++..
T Consensus 76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~ 155 (480)
T 1ho8_A 76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 155 (480)
T ss_dssp STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 5678999999985 688999999999988876543 33333 33322 222333 33345666677777776776654
Q ss_pred CCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCc-HHHHHHhhcc----C--
Q 000124 156 GLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGG-VDIIVGLLSS----D-- 228 (2138)
Q Consensus 156 ~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GG-I~~Lv~lL~s----~-- 228 (2138)
+. ++......++... -++..|.... ....+.-+.++|..|...++-|.....+.|. ++.+...+.. .
T Consensus 156 ~~-~~~~~l~~l~~~~---~~~~~L~~~~--~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~ 229 (480)
T 1ho8_A 156 GL-HNVKLVEKLLKNN---NLINILQNIE--QMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLA 229 (480)
T ss_dssp TT-CCHHHHHHHHHCH---HHHHHHHCTT--CHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC----
T ss_pred CC-ccHhHHHHHhhhH---HHHHHhcccc--CCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccc
Confidence 32 2333333333211 2334444321 1223556888898888877665333323332 5555443321 1
Q ss_pred -----------CHHHHHHHHHHHHHHHhhcCCCcchhhccchH--HHHHHHhccCCCHhHHHHHHHHHHHHhhcCH----
Q 000124 229 -----------NAAAQSNAASLLARLMLAFGDSIPTVIDSGAV--KALVQLVGQNNDISVRASAADALEALSSKSI---- 291 (2138)
Q Consensus 229 -----------s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL--~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~---- 291 (2138)
.-+.+..++-++|-|+...+ ....+...+.. ..|+.+++....+.+-+-+..++.|+...++
T Consensus 230 ~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~ 308 (480)
T 1ho8_A 230 TRIVATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHK 308 (480)
T ss_dssp ---------CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHH
T ss_pred cccccccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhh
Confidence 24567888899999884322 33444444433 6677777655567888889999999988642
Q ss_pred HH-HHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHH
Q 000124 292 KA-KKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAY 370 (2138)
Q Consensus 292 e~-Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~ 370 (2138)
.. .+.+...++ ..+++.+....- .++.+ .+.|..+ .+.| ..-
T Consensus 309 ~~~~~~~~~~~~-l~~l~~L~~rk~------~Dedl----~edl~~L-----------~e~L-------------~~~-- 351 (480)
T 1ho8_A 309 KVIKQLLLLGNA-LPTVQSLSERKY------SDEEL----RQDISNL-----------KEIL-------------ENE-- 351 (480)
T ss_dssp HHHHHHHHHHCH-HHHHHHHHSSCC------SSHHH----HHHHHHH-----------HHHH-------------HHH--
T ss_pred hHHHHHHHHccc-hHHHHHHhhCCC------CcHHH----HHHHHHH-----------HHHH-------------HHH--
Confidence 11 122222333 334444433110 00001 0111111 0000 000
Q ss_pred HHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHH----HHhhh--chHHHHHHHHcc-
Q 000124 371 ALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQ----WVSHA--EAKKVLIGLITM- 443 (2138)
Q Consensus 371 ~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~----~L~e~--~gI~~LV~LL~s- 443 (2138)
+. .-...+++...+....-.+ +..-.++..|+ .+.+. ..++.|+.++.+
T Consensus 352 ----~~----------~ltsfDeY~~El~sG~L~W----------SP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~ 407 (480)
T 1ho8_A 352 ----YQ----------ELTSFDEYVAELDSKLLCW----------SPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAK 407 (480)
T ss_dssp ----HH----------TCCHHHHHHHHHHHTCCCC----------CGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHH
T ss_pred ----HH----------hcccHHHHHHHHhcCCccc----------CCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhh
Confidence 00 0001112222211110000 00001112222 12222 246778888873
Q ss_pred ---------CCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhc
Q 000124 444 ---------ATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQ 504 (2138)
Q Consensus 444 ---------ss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~ 504 (2138)
.++.+...|+.-++.+.+..|..+..+.+.||=..+++++.++|+++|..|+.++..+-.+
T Consensus 408 ~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 408 VRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp HHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 3577788888999999999888888887888888899999999999999999999887653
No 140
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.76 E-value=0.0012 Score=77.18 Aligned_cols=185 Identities=16% Similarity=0.109 Sum_probs=132.0
Q ss_pred HHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCc
Q 000124 481 SLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAV 560 (2138)
Q Consensus 481 ~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI 560 (2138)
.++.++++.+|..++..| ....|..+++++++.+|..++..| ..
T Consensus 57 ~ll~d~~~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L------------------~~ 100 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRL------------------PR 100 (244)
T ss_dssp GGTTCSSHHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTS------------------CS
T ss_pred HHhcCCCHHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHC------------------CH
Confidence 456788888888887742 123466777888999999888642 12
Q ss_pred chhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhh
Q 000124 561 PAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLR 640 (2138)
Q Consensus 561 ~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~ 640 (2138)
+.|..++++.++.++..++..+ . .+.+..++++.+..|+..+...+ ..+
T Consensus 101 ~~L~~ll~D~d~~VR~~aA~~l---~-------~~~L~~L~~D~d~~VR~~aA~~l---------------------~~~ 149 (244)
T 1lrv_A 101 EQLSALMFDEDREVRITVADRL---P-------LEQLEQMAADRDYLVRAYVVQRI---------------------PPG 149 (244)
T ss_dssp GGGGGTTTCSCHHHHHHHHHHS---C-------TGGGGGGTTCSSHHHHHHHHHHS---------------------CGG
T ss_pred HHHHHHHcCCCHHHHHHHHHhC---C-------HHHHHHHHcCCCHHHHHHHHHhc---------------------CHH
Confidence 4677888999999999988853 1 12466777888888887654311 123
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhH
Q 000124 641 SLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSY 720 (2138)
Q Consensus 641 aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I 720 (2138)
.+..+++++++.+|..++.. +. .+.+..+++|.+..||..++.. +
T Consensus 150 ~l~~l~~D~d~~VR~~aa~~---l~---------------~~ll~~ll~D~d~~VR~aaa~~---l-------------- 194 (244)
T 1lrv_A 150 RLFRFMRDEDRQVRKLVAKR---LP---------------EESLGLMTQDPEPEVRRIVASR---L-------------- 194 (244)
T ss_dssp GGGGTTTCSCHHHHHHHHHH---SC---------------GGGGGGSTTCSSHHHHHHHHHH---C--------------
T ss_pred HHHHHHcCCCHHHHHHHHHc---CC---------------HHHHHHHHcCCCHHHHHHHHHh---C--------------
Confidence 45567888899999988875 11 1335567889999999988864 2
Q ss_pred HhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHH
Q 000124 721 IAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRAL 789 (2138)
Q Consensus 721 ~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL 789 (2138)
..+.|..++++++..||..++..+. .+.|..+ .+.+..||..|+..|
T Consensus 195 ----~~~~L~~Ll~D~d~~VR~~aa~~l~-----------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 195 ----RGDDLLELLHDPDWTVRLAAVEHAS-----------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp ----CGGGGGGGGGCSSHHHHHHHHHHSC-----------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred ----CHHHHHHHHcCCCHHHHHHHHHcCC-----------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 1256788899999999999888753 3456666 888999999987654
No 141
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.73 E-value=0.11 Score=71.15 Aligned_cols=295 Identities=14% Similarity=0.140 Sum_probs=189.8
Q ss_pred HHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCCh---hHHHHHH
Q 000124 479 LISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSE---DIRACVE 555 (2138)
Q Consensus 479 LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd---~~r~~I~ 555 (2138)
+++-+...+..-+..++..+.++.......+ ....+.+..|.+.+.+.... +.|+.++..|+.... ...-.+.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~ 94 (986)
T 2iw3_A 19 LFQKLSVATADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV 94 (986)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH
T ss_pred HHhhccccchhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH
Confidence 4444554445556777778887765321111 11124555666666554333 899999999985321 2223332
Q ss_pred HcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc----hhhHHHHHHHhcCC-CcchHHHHHHHHHHHHhhhcchHHHH
Q 000124 556 SAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD----SATINQLLALLLGD-SPSSKAHVIKVLGHVLTMALQEDLVQ 630 (2138)
Q Consensus 556 e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e----~~aI~~Li~LL~~~-d~~V~~~A~~AL~~La~~~~~~d~v~ 630 (2138)
+.++.++..+.+....++..|..++..+...-. ...+|.|+..+... +...+..++.++..|+... ++.+.
T Consensus 95 --~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~ 170 (986)
T 2iw3_A 95 --QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVA 170 (986)
T ss_dssp --TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHH
T ss_pred --HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHH
Confidence 467777888888888999988888887776533 34567888878644 5667788888888887543 23332
Q ss_pred hhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCC
Q 000124 631 KGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPT 710 (2138)
Q Consensus 631 ~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~ 710 (2138)
.. -...+|.+.+.+.+..++++..|..++-.+|.. -++... +..++.|++.+.+.+. + -.|+..|+..+
T Consensus 171 ~~--~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~-~~n~d~---~~~~~~~~~~~~~p~~-~----~~~~~~l~~~t 239 (986)
T 2iw3_A 171 LR--MPELIPVLSETMWDTKKEVKAAATAAMTKATET-VDNKDI---ERFIPSLIQCIADPTE-V----PETVHLLGATT 239 (986)
T ss_dssp HH--HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGG-CCCTTT---GGGHHHHHHHHHCTTH-H----HHHHHHHTTCC
T ss_pred Hh--ccchhcchHhhcccCcHHHHHHHHHHHHHHHhc-CCCcch---hhhHHHHHHHhcChhh-h----HHHHHHhhcCe
Confidence 22 244678888888888999999999999999872 222221 3567899999988754 2 23466666533
Q ss_pred CcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC---CchHHHHHHhcCcHHHHHHHHhC-CCHHHHHHHH
Q 000124 711 KTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS---DPDIAAEVLLEDVVSALTRVLAE-GTSEGKKNAS 786 (2138)
Q Consensus 711 ~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~---~~e~r~~Ii~~g~L~~LV~LL~~-~~~~Vr~~Aa 786 (2138)
...+...-. =+=.+|.|..-|+..+..++..++-...||+. +|.....+ -+..+|.+.+.... .+|++|+.|.
T Consensus 240 fv~~v~~~~--l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f-~~~l~p~~~~~~~~~~~pe~r~~~~ 316 (986)
T 2iw3_A 240 FVAEVTPAT--LSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPF-LGKLLPGLKSNFATIADPEAREVTL 316 (986)
T ss_dssp CCSCCCHHH--HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHH-HTTTHHHHHHHTTTCCSHHHHHHHH
T ss_pred eEeeecchh--HHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhh-hhhhhhHHHHHhhccCCHHHHHHHH
Confidence 321010000 01134556667777889999999999999976 45433333 35677888776554 4899999999
Q ss_pred HHHHHhhhc
Q 000124 787 RALHQLLKH 795 (2138)
Q Consensus 787 ~AL~nL~~~ 795 (2138)
+++..|...
T Consensus 317 ~a~~~l~~~ 325 (986)
T 2iw3_A 317 RALKTLRRV 325 (986)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999888554
No 142
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=96.56 E-value=0.096 Score=65.98 Aligned_cols=248 Identities=15% Similarity=0.074 Sum_probs=152.1
Q ss_pred CHHHHHHHHHHHHHhhhccchhhHHhhhchh--HHHHHHHhcC---------------C--chhhHHHHHHHHHHHhhcC
Q 000124 445 TADVREYLILSLTKLCRREVGIWEAIGKREG--IQLLISLLGL---------------S--SEQHQEYAVQLIAILTEQV 505 (2138)
Q Consensus 445 s~evq~~Aa~aL~~Ls~~s~~~~~~I~e~gg--Ip~LV~LL~s---------------~--d~~Vr~~Aa~aL~nLa~~s 505 (2138)
+.+.+..++.+|..+... +..+..+.+.++ +++++.+++. + ..+.+.+++.+++-|+. +
T Consensus 181 ~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF-~ 258 (480)
T 1ho8_A 181 QMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTF-N 258 (480)
T ss_dssp CHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTT-S
T ss_pred CCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHc-C
Confidence 345566777888887776 566666655443 5666544321 1 34567889999999998 4
Q ss_pred chhHHHHHhcCCc--hHHHHHhhhC-CHHHHHHHHHHHHHHhcCCh-----hHHHHHHHcCCcchhhhcccc---CChhH
Q 000124 506 DDSKWAITAAGGI--PPLVQLLEAG-SQKAREVAAHVLWILCCHSE-----DIRACVESAGAVPAFLWLLKS---GGPKG 574 (2138)
Q Consensus 506 ~e~r~~I~~aGaI--p~LV~LLks~-d~~vre~Aa~aL~nLs~~sd-----~~r~~I~e~GaI~aLv~LLkS---~~~ev 574 (2138)
++....+...+.. +.|++.++.. ..++.+.+..+|.||..... ...+++...++ +.+++.+.. +++++
T Consensus 259 ~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl 337 (480)
T 1ho8_A 259 PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEEL 337 (480)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHH
Confidence 5555555555432 5677777765 78999999999999976441 12334433444 445544433 45666
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhh--hc-chHHHHhh---hcc--cchhhHHHHhh
Q 000124 575 QDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTM--AL-QEDLVQKG---SAA--NKGLRSLVQVL 646 (2138)
Q Consensus 575 q~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~--~~-~~d~v~~~---l~~--~GaI~aLV~LL 646 (2138)
.+........|...-. .-.+..++..+.......- .. .+.+.++- +.+ -..++.|++++
T Consensus 338 ~edl~~L~e~L~~~~~-------------~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL 404 (480)
T 1ho8_A 338 RQDISNLKEILENEYQ-------------ELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELL 404 (480)
T ss_dssp HHHHHHHHHHHHHHHH-------------TCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------------hcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHH
Confidence 5544443333322210 0001122222222211111 11 11222221 122 22478999999
Q ss_pred cC----------CCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 000124 647 NS----------SNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2138)
Q Consensus 647 ks----------~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~ 708 (2138)
++ .++.+..-|+.=++.++...|+.+..+.+.|+=..+++++.+.+++||.+|..|+..+..
T Consensus 405 ~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 405 QAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred hhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 74 256677778888888888889888888888998899999999999999999999988753
No 143
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=96.53 E-value=0.8 Score=63.85 Aligned_cols=493 Identities=11% Similarity=0.038 Sum_probs=231.9
Q ss_pred HhcCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcc-CCHHHHHHHHHHHHHhhcCCCCC-ChhhHHHHHHc
Q 000124 93 LRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSD-DHVGMKIFVTE 170 (2138)
Q Consensus 93 Lks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~s-ed~eVr~aAa~AL~nLS~~~~nk-d~~gre~Ivea 170 (2138)
+.+++...|..|-..|..+-..+ ++...+..+|.+ .+..+|..|+..|.+......+. +...+ ..++.
T Consensus 25 ~~~p~~~~r~~Ae~~L~~~~~~p---------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~-~~ir~ 94 (1049)
T 3m1i_C 25 FYQGSGVQQKQAQEILTKFQDNP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHR-IGIRN 94 (1049)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHST---------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHH-HHHHH
T ss_pred HhCCChHHHHHHHHHHHHHHhCc---------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHH-HHHHH
Confidence 34456667777888887764333 445556666654 58999999999999886421111 12223 23333
Q ss_pred CcHHHHHHhhCCCC--CCChhHHHHHHHHHHHHhcCC-CchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhc
Q 000124 171 GVVPTLWDQLNPKN--KQDNVVQGFVTGALRNLCGDK-DGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAF 247 (2138)
Q Consensus 171 G~Ip~Ll~LL~s~s--~ed~~V~e~Al~aL~nLcs~~-e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~ 247 (2138)
..+..+...-..+. ..++.++.....++..+.... ...|. ..++.++..+. .++..++.++.+|..++..-
T Consensus 95 ~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp-----~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev 168 (1049)
T 3m1i_C 95 FVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWP-----EFIPELIGSSS-SSVNVCENNMIVLKLLSEEV 168 (1049)
T ss_dssp HHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCT-----THHHHHHHHHT-TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccch-----HHHHHHHHHHc-cChHHHHHHHHHHHHHHHHH
Confidence 34444443221100 002456777777777776652 23443 34778888876 45667788888888888421
Q ss_pred CCCcc------------h-hhc--cchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcC
Q 000124 248 GDSIP------------T-VID--SGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVA 312 (2138)
Q Consensus 248 ~e~r~------------~-l~~--~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s 312 (2138)
.+... . +.. ...+..+...+....+..++..+..++.......+ -..+.+...++.+++.+..
T Consensus 169 ~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~--~~~~~~~~ll~~l~~~~l~ 246 (1049)
T 3m1i_C 169 FDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIP--YRYIYETNILELLSTKFMT 246 (1049)
T ss_dssp HTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHTHHHH
T ss_pred HHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC--HHHHhhhhHHHHHHHHhCC
Confidence 11100 0 111 11233334445434455677777777766544211 1123334445555532221
Q ss_pred CchhhhhhhhhhhhHHHHHHHHHHhhcC-chh---------------HHHHhhh-hcCC-----------CCchh----h
Q 000124 313 PSKECMQGQRGQALQGHATRALANIYGG-MPA---------------LVVYLGE-LSQS-----------PRLAA----P 360 (2138)
Q Consensus 313 ~s~e~mq~~~~~alqe~Al~ALanIsGg-is~---------------LI~~L~e-lL~~-----------~~ss~----~ 360 (2138)
++ .++..|+.||..+.+. +++ .+..+.. ++.. .+... .
T Consensus 247 -~~---------~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~ 316 (1049)
T 3m1i_C 247 -SP---------DTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQD 316 (1049)
T ss_dssp -SH---------HHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHH
T ss_pred -CH---------hHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHH
Confidence 11 1666777887776532 111 1111111 1110 11111 1
Q ss_pred HHHHHHHHHHH-HHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhc----CchhHHHHhh--hch
Q 000124 361 VADIIGALAYA-LMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYG----NIFLSQWVSH--AEA 433 (2138)
Q Consensus 361 ~A~~L~aLa~~-l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~----n~~~~~~L~e--~~g 433 (2138)
.+..+..+... ...+. .+...... -..+.+.+.......+. .+...+..-+..+.. .+..+..... ...
T Consensus 317 l~~~~~~~~~~~~~~~~-~~~~~~~~--l~~~l~~ll~~~~~~d~-~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~L 392 (1049)
T 3m1i_C 317 LAMFLTTYLARNRALLE-SDESLREL--LLNAHQYLIQLSKIEER-ELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQL 392 (1049)
T ss_dssp HHHHHHHHHHHHHHHHH-SCGGGHHH--HHHHHHHHHHHHTSSCH-HHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc-CChhhHHH--HHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Confidence 22222222211 11111 00000000 01233555555555543 366666655555544 2111111100 012
Q ss_pred HHHHHHHHccC-------------------CH---HHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhc--CCchh
Q 000124 434 KKVLIGLITMA-------------------TA---DVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLG--LSSEQ 489 (2138)
Q Consensus 434 I~~LV~LL~ss-------------------s~---evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~--s~d~~ 489 (2138)
++.++..+... +. ..+..+..+|..++...+.... .-..+.+-+.+. ..+..
T Consensus 393 v~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l----~~v~~~l~~~l~~~~~~W~ 468 (1049)
T 3m1i_C 393 RLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTE----EIMISKLARQIDGSEWSWH 468 (1049)
T ss_dssp HHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHH----HHHHHHHHHHHTSSSCCHH
T ss_pred HHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHH----HHHHHHHHHHhCCCCCCHH
Confidence 23333333211 00 1233445566665533111100 111233334443 34667
Q ss_pred hHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhh-----hCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhh
Q 000124 490 HQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLE-----AGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFL 564 (2138)
Q Consensus 490 Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLk-----s~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv 564 (2138)
.++.++.+++.++....+......-...++.|+.+.. .+.+.++..++++++..+..-......+ ...++.++
T Consensus 469 ~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l--~~vl~~ll 546 (1049)
T 3m1i_C 469 NINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTVILKLF 546 (1049)
T ss_dssp HHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHH
Confidence 8999999999987643222111111123333333322 1234445467788886653111111111 23456677
Q ss_pred hccccCChhHHHHHHHHHHHHHHhhchh-----------hHHHH----HHHhcCCCcchHHHHHHHHHHHHhhh
Q 000124 565 WLLKSGGPKGQDASAMALTKLIRAADSA-----------TINQL----LALLLGDSPSSKAHVIKVLGHVLTMA 623 (2138)
Q Consensus 565 ~LLkS~~~evq~~Aa~AL~nLs~~~e~~-----------aI~~L----i~LL~~~d~~V~~~A~~AL~~La~~~ 623 (2138)
..+.+.++.++..|+.++.+++...... .++.+ ..++..-+.+......++++.+....
T Consensus 547 ~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~ 620 (1049)
T 3m1i_C 547 EFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1049)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTC
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcC
Confidence 7778888999999999999999763321 12332 33333333334455666777665443
No 144
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=96.22 E-value=7.3 Score=54.25 Aligned_cols=492 Identities=10% Similarity=0.077 Sum_probs=228.4
Q ss_pred ccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhc-----CHHHHHHHHhc
Q 000124 226 SSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSK-----SIKAKKAVVAA 300 (2138)
Q Consensus 226 ~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~-----s~e~Rk~i~e~ 300 (2138)
-+++.+.|..|-..|.++- .++ ++...+..++.++.+..+|-.|+..|.+...+ +++.|..+.
T Consensus 26 ~~p~~~~r~~Ae~~L~~~~-~~p---------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir-- 93 (1049)
T 3m1i_C 26 YQGSGVQQKQAQEILTKFQ-DNP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIR-- 93 (1049)
T ss_dssp HHCCHHHHHHHHHHHHHHH-HST---------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHH--
T ss_pred hCCChHHHHHHHHHHHHHH-hCc---------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHH--
Confidence 3445567777877777664 222 34555666676566789999999999988653 345555554
Q ss_pred CCHHHHHHhhcCCc--hhhhhhhhhhhhHHHHHHHHHHhh-----cCchhHHHHhhhhcCCCCc-hhhHHHHHHHHHHHH
Q 000124 301 DGVPVLIGAIVAPS--KECMQGQRGQALQGHATRALANIY-----GGMPALVVYLGELSQSPRL-AAPVADIIGALAYAL 372 (2138)
Q Consensus 301 ggL~~LI~LL~s~s--~e~mq~~~~~alqe~Al~ALanIs-----Ggis~LI~~L~elL~~~~s-s~~~A~~L~aLa~~l 372 (2138)
..|+.++.+.. ....+ ....++.....+++.+. +.-+.++..+.+.++.... .+..-.++..++...
T Consensus 94 ---~~ll~~l~~~~~~~~~~~--~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~~~~~~~~~~l~~L~~l~eev 168 (1049)
T 3m1i_C 94 ---NFVVGMIISMCQDDEVFK--TQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLSEEV 168 (1049)
T ss_dssp ---HHHHHHHHHHHHCHHHHH--HCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHhhCCccccch--hhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHccChHHHHHHHHHHHHHHHHH
Confidence 23444433211 00000 00113344444444443 2234466666666642211 122334444444332
Q ss_pred HHhhcCCCCCC--------cccch--hhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHc
Q 000124 373 MVFEQKSGVDD--------EPFDA--RQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLIT 442 (2138)
Q Consensus 373 ~~l~q~~~~~~--------~~~~~--~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~ 442 (2138)
..+. ..... ..+.. ..+...+..++.......++..++.++.+....-.. ..+.+...++.+...+.
T Consensus 169 ~~~~--~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~-~~~~~~~ll~~l~~~~l 245 (1049)
T 3m1i_C 169 FDFS--AEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPY-RYIYETNILELLSTKFM 245 (1049)
T ss_dssp HTSC--TTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHHSSSHHHHHHTHHH
T ss_pred HHhc--chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH-HHHhhhhHHHHHHHHhC
Confidence 2111 00000 01111 112233344444333344777888888765332221 12333455565553222
Q ss_pred cCCHHHHHHHHHHHHHhhhccc-hh----hHHhhh--chhHHHHHH-H----------h---cCCchhhHHHHHHHHHHH
Q 000124 443 MATADVREYLILSLTKLCRREV-GI----WEAIGK--REGIQLLIS-L----------L---GLSSEQHQEYAVQLIAIL 501 (2138)
Q Consensus 443 sss~evq~~Aa~aL~~Ls~~s~-~~----~~~I~e--~ggIp~LV~-L----------L---~s~d~~Vr~~Aa~aL~nL 501 (2138)
.+++++..++.+|..+..... .. ...+.. .+.+..+.. + + ...+.+.....+..+..+
T Consensus 246 -~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~ 324 (1049)
T 3m1i_C 246 -TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTY 324 (1049)
T ss_dssp -HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHH
T ss_pred -CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHH
Confidence 378889999999988876521 11 111100 112222211 1 1 112333333444444443
Q ss_pred hhcC-------chhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhc----C---ChhHHHHHHHcCCcchhhhcc
Q 000124 502 TEQV-------DDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCC----H---SEDIRACVESAGAVPAFLWLL 567 (2138)
Q Consensus 502 a~~s-------~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~----~---sd~~r~~I~e~GaI~aLv~LL 567 (2138)
+... ++.+..+ ...++.++......+.++...+......+.. . ....+..+. ..++.++..+
T Consensus 325 ~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~--~Lv~~ll~~m 400 (1049)
T 3m1i_C 325 LARNRALLESDESLRELL--LNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICS--QLRLVIIENM 400 (1049)
T ss_dssp HHHHHHHHHSCGGGHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHH--HHHHHHHHTC
T ss_pred HHHHHHHHcCChhhHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH--HHHHHHHHhc
Confidence 3210 0011111 1234445555556677888888877776654 1 111121111 1112222211
Q ss_pred cc---------C----------Ch---hHHHHHHHHHHHHHHhhchhhHHHHHHH----hcC--CCcchHHHHHHHHHHH
Q 000124 568 KS---------G----------GP---KGQDASAMALTKLIRAADSATINQLLAL----LLG--DSPSSKAHVIKVLGHV 619 (2138)
Q Consensus 568 kS---------~----------~~---evq~~Aa~AL~nLs~~~e~~aI~~Li~L----L~~--~d~~V~~~A~~AL~~L 619 (2138)
.- + +. ..+..+..+|..++.......++.+... +.+ .+...++.++.+++.+
T Consensus 401 ~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsi 480 (1049)
T 3m1i_C 401 VRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSI 480 (1049)
T ss_dssp CCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHT
T ss_pred CCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 10 0 00 2244566677777654333444444443 332 2344566777777766
Q ss_pred HhhhcchHHHHhhhcccchhhHHHHhhcC-----CCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHH
Q 000124 620 LTMALQEDLVQKGSAANKGLRSLVQVLNS-----SNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQM 694 (2138)
Q Consensus 620 a~~~~~~d~v~~~l~~~GaI~aLV~LLks-----~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~ 694 (2138)
+........ ... -...++.|..+... ..+.++..+++++...+..-..+... =..+++.++..+.+.++.
T Consensus 481 a~~~~~~~e-~~~--l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~--l~~vl~~ll~~l~~~~~~ 555 (1049)
T 3m1i_C 481 SGTMSEDTE-KRF--VVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF--LRTVILKLFEFMHETHEG 555 (1049)
T ss_dssp TTSSCHHHH-HHH--HHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHH--HHHHHHHHHHHTTSSCHH
T ss_pred hcccCchhh-HHH--HHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHhcCCCHH
Confidence 532211110 000 01134444443322 13344445777777665421111111 124566677788888999
Q ss_pred HHHHHHHHHHHhcCCCCcccchhhhHH----------hcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC
Q 000124 695 VATQSARALGALSRPTKTKTTNKMSYI----------AEGDVKPLIKLAKTSSIDAAETAVAALANLLS 753 (2138)
Q Consensus 695 Vk~~AA~ALanLa~s~~~~d~~r~~I~----------~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~ 753 (2138)
++..|+.++.+++. ..+..+. -..++..|..++..-+.+.......+++.++.
T Consensus 556 V~~~A~~al~~l~~------~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~ 618 (1049)
T 3m1i_C 556 VQDMACDTFIKIVQ------KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1049)
T ss_dssp HHHHHHHHHHHHHH------HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------HHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 99999999999986 2232222 01122333344444444445566666666643
No 145
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=96.11 E-value=0.092 Score=63.33 Aligned_cols=155 Identities=13% Similarity=0.063 Sum_probs=126.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH-hccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhH
Q 000124 86 MPLFISILRSGTPLAKVNVAATLSV-LCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGM 164 (2138)
Q Consensus 86 Vp~LV~LLks~~~evr~~Aa~~L~~-Ls~~e~~r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gr 164 (2138)
+..+++-|.+++.+.+..++.-|.. +..+.+-...|+..+|+..|+++....+...+..++.+|.+|-. ...|.
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~-----~v~Gm 194 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLML-----FVDGM 194 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTT-----SHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHh-----ccccc
Confidence 5566777888888889999999987 67889999999999999999999988899999999999999985 34566
Q ss_pred HHHH-HcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCc----------HHHHHHhhc---cCCH
Q 000124 165 KIFV-TEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGG----------VDIIVGLLS---SDNA 230 (2138)
Q Consensus 165 e~Iv-eaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GG----------I~~Lv~lL~---s~s~ 230 (2138)
..++ ....|..+..++.+ ..+.|...|+..|..+|...++....+.++-. .+.|+.+|. +.+.
T Consensus 195 ~gvvs~~~fI~~lyslv~s---~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~ 271 (339)
T 3dad_A 195 LGVVAHSDTIQWLYTLCAS---LSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADP 271 (339)
T ss_dssp HHHHHCHHHHHHHHHGGGC---SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCH
T ss_pred cchhCCHHHHHHHHHHHcC---ccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCH
Confidence 6666 44578888888874 34778999999999999988876665554433 788999997 6788
Q ss_pred HHHHHHHHHHHHHHhhcC
Q 000124 231 AAQSNAASLLARLMLAFG 248 (2138)
Q Consensus 231 evq~~A~~aL~nLs~~~~ 248 (2138)
+++.+++..+..+...-+
T Consensus 272 elq~~amtLIN~lL~~ap 289 (339)
T 3dad_A 272 ELLVYTVTLINKTLAALP 289 (339)
T ss_dssp HHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 999999988888775433
No 146
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=96.04 E-value=0.12 Score=62.28 Aligned_cols=147 Identities=18% Similarity=0.163 Sum_probs=112.6
Q ss_pred HHHcCCCChhHHHHHHHHHHHHh-hcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhch
Q 000124 396 VMLLKPHDNKLVQERVLEAMASL-YGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKRE 474 (2138)
Q Consensus 396 V~LL~s~~~e~vr~~Aa~AL~~L-~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~g 474 (2138)
+..+.+.+.+ .+.+++..|..+ ..+.+...++...+|+..|+.....++...|.++..+|.++-.........+-...
T Consensus 124 iekL~~~~~~-~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~ 202 (339)
T 3dad_A 124 LEKLYSSSGP-ELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSD 202 (339)
T ss_dssp HHHHHHCCHH-HHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHH
T ss_pred HHHHhcCCcH-HHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHH
Confidence 3333444443 567888888874 56788999999999999999999999999999999999999877333333333556
Q ss_pred hHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhc-------C---CchHHHHHhh---hCCHHHHHHHHHHHH
Q 000124 475 GIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAA-------G---GIPPLVQLLE---AGSQKAREVAAHVLW 541 (2138)
Q Consensus 475 gIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~a-------G---aIp~LV~LLk---s~d~~vre~Aa~aL~ 541 (2138)
.|..+..++.+.+..+.+.|+.+|..++..++.+...+.++ . .+..|+.+|+ +++.+++..+...+-
T Consensus 203 fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN 282 (339)
T 3dad_A 203 TIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLIN 282 (339)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 78889999998889999999999999998766555444332 1 3778999997 668999988776665
Q ss_pred HH
Q 000124 542 IL 543 (2138)
Q Consensus 542 nL 543 (2138)
.+
T Consensus 283 ~l 284 (339)
T 3dad_A 283 KT 284 (339)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 147
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=96.00 E-value=8.5 Score=52.71 Aligned_cols=344 Identities=12% Similarity=0.054 Sum_probs=175.5
Q ss_pred hhCCHHHHHHHHHHHHHHhcCChh-HHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh--c----hhhHHHHH
Q 000124 526 EAGSQKAREVAAHVLWILCCHSED-IRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--D----SATINQLL 598 (2138)
Q Consensus 526 ks~d~~vre~Aa~aL~nLs~~sd~-~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~--e----~~aI~~Li 598 (2138)
.+.+...++.++.+++.++..-.. ....+. ..++.+..+ .++.+.++..++++++.++..- . ...++.++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~~~~l~--~l~~~l~~l-~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~ 535 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNYSDVVP--GLIGLIPRI-SISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVL 535 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHH--HHHHHGGGS-CCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchhhHHHH--HHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 344788899999999999763221 001111 112222233 3357889999999999887541 1 24567777
Q ss_pred HHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCC--CHHHHHHHHHHHHHHhhcCh-hhhhhh
Q 000124 599 ALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSS--NEENQEYAASVLADLFSMRQ-DICGSL 675 (2138)
Q Consensus 599 ~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~--s~evre~Aa~ALanL~s~~~-e~r~~I 675 (2138)
..+.+ +.++..++.++..++..... .... .-...+..|..++..+ +.+.+..+..+++.+...-+ +.....
T Consensus 536 ~~l~~--~~V~~~A~~al~~l~~~~~~--~l~p--~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~ 609 (963)
T 2x19_B 536 HALGN--PELSVSSVSTLKKICRECKY--DLPP--YAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKN 609 (963)
T ss_dssp HHTTC--GGGHHHHHHHHHHHHHHTGG--GCTT--THHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHhCC--chHHHHHHHHHHHHHHHHHH--HHHh--hHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 77754 78999999999988743211 0000 0122355556666653 67889999999999876332 222222
Q ss_pred hhCCCHHHHHHHhc----c-CCHHHHH---HHHHHHHHhcCCCCc-cc-c--------------h--hhhHHhcCChhhH
Q 000124 676 ATDEIVNPCMRLLT----S-NTQMVAT---QSARALGALSRPTKT-KT-T--------------N--KMSYIAEGDVKPL 729 (2138)
Q Consensus 676 ve~GaV~~Lv~LL~----d-gs~~Vk~---~AA~ALanLa~s~~~-~d-~--------------~--r~~I~~~G~V~~L 729 (2138)
. ...++++...+. . .++..+. ....+|+.+.+.... .+ . . ...-....+++.+
T Consensus 610 ~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (963)
T 2x19_B 610 L-HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLI 688 (963)
T ss_dssp H-HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHH
Confidence 1 234444444432 2 2454444 334444444432111 00 0 0 0011222344555
Q ss_pred Hhhhhc--CCHHHHHHHHHHHHHhhC--CchHHHHHHhcCcHHHHHHHH-----hCCCHHHHHHHHHHHHHhhhcCCCch
Q 000124 730 IKLAKT--SSIDAAETAVAALANLLS--DPDIAAEVLLEDVVSALTRVL-----AEGTSEGKKNASRALHQLLKHFPVGD 800 (2138)
Q Consensus 730 v~LL~s--~s~~Vr~eAl~ALaNLa~--~~e~r~~Ii~~g~L~~LV~LL-----~~~~~~Vr~~Aa~AL~nL~~~~~~~d 800 (2138)
..++.. .+.++.+.++.++..++. .+.. ...+|+++..+ ..+.+.+-.-....+...+.+....+
T Consensus 689 ~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~------~~~l~~~~~~l~~~~~~~~~~~~l~l~~~li~~f~~~~~~~~ 762 (963)
T 2x19_B 689 QKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDF------APMVPQLCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAHFP 762 (963)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTT------GGGHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCTTTCH
T ss_pred HHHHHhccCchHHHHHHHHHHHHHHHhhcccc------cccHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCcchHH
Confidence 555543 467888888888888753 1110 12344444332 11233333222223322222211111
Q ss_pred hhhhhhhhhhhHHHHHHhhc-cCCCCchhHHHHHHHHHHHhhcccCCcccCCcccccccCCCchHHHHHhhhcCChHHHH
Q 000124 801 VLKGNAQCRFVVLTLVDSLN-AMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQD 879 (2138)
Q Consensus 801 ~i~~~i~~~gav~~LV~LL~-s~~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~ 879 (2138)
.+.. +. .......+.++. .-.+....+.+....+..+........ ..++. ....-+..+...+.+.++.+..
T Consensus 763 ~~~~-~l-~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~-~~~~~----~~~~i~~~~~~~l~~~~~~~~~ 835 (963)
T 2x19_B 763 PIEA-LF-LLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLF-LCERL----DVKAVFQCAVLALKFPEAPTVK 835 (963)
T ss_dssp HHHH-HH-HHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGG-GCTTS----CHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHH-HH-HHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHH-cCCcc----cHHHHHHHHHHHcCCCCHHHHH
Confidence 1111 00 122333444443 223345677788777777764311100 00000 0111344556677788888999
Q ss_pred HHHHHHHHhhccC
Q 000124 880 KAIEILSRLCGDQ 892 (2138)
Q Consensus 880 ~AieiL~~L~~~~ 892 (2138)
.+...+.+++...
T Consensus 836 ~~l~~l~~l~~~~ 848 (963)
T 2x19_B 836 ASCGFFTELLPRC 848 (963)
T ss_dssp HHHHHHHHHGGGT
T ss_pred HHHHHHHHHHhcC
Confidence 9999999988654
No 148
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=95.81 E-value=0.0043 Score=72.43 Aligned_cols=186 Identities=14% Similarity=0.071 Sum_probs=130.0
Q ss_pred HHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCc
Q 000124 439 GLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGI 518 (2138)
Q Consensus 439 ~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaI 518 (2138)
.++.+.++.++..++..+ ....+..+++++++.+|..++..| ..
T Consensus 57 ~ll~d~~~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L------------------~~ 100 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRL------------------PR 100 (244)
T ss_dssp GGTTCSSHHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTS------------------CS
T ss_pred HHhcCCCHHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHC------------------CH
Confidence 455777888888887642 122367778899999999988642 12
Q ss_pred hHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHH
Q 000124 519 PPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLL 598 (2138)
Q Consensus 519 p~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li 598 (2138)
+.|..++++.++.+|..++.. +. .+.|..+++++++.++..++.. +. .+.+.
T Consensus 101 ~~L~~ll~D~d~~VR~~aA~~---l~---------------~~~L~~L~~D~d~~VR~~aA~~---l~-------~~~l~ 152 (244)
T 1lrv_A 101 EQLSALMFDEDREVRITVADR---LP---------------LEQLEQMAADRDYLVRAYVVQR---IP-------PGRLF 152 (244)
T ss_dssp GGGGGTTTCSCHHHHHHHHHH---SC---------------TGGGGGGTTCSSHHHHHHHHHH---SC-------GGGGG
T ss_pred HHHHHHHcCCCHHHHHHHHHh---CC---------------HHHHHHHHcCCCHHHHHHHHHh---cC-------HHHHH
Confidence 456777888999999988873 21 2346677889999999988873 21 12355
Q ss_pred HHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhC
Q 000124 599 ALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATD 678 (2138)
Q Consensus 599 ~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~ 678 (2138)
.++++.++.|+..+...+ .-+.|..+++++++++|..++..+
T Consensus 153 ~l~~D~d~~VR~~aa~~l---------------------~~~ll~~ll~D~d~~VR~aaa~~l----------------- 194 (244)
T 1lrv_A 153 RFMRDEDRQVRKLVAKRL---------------------PEESLGLMTQDPEPEVRRIVASRL----------------- 194 (244)
T ss_dssp GTTTCSCHHHHHHHHHHS---------------------CGGGGGGSTTCSSHHHHHHHHHHC-----------------
T ss_pred HHHcCCCHHHHHHHHHcC---------------------CHHHHHHHHcCCCHHHHHHHHHhC-----------------
Confidence 677888888887654421 124455678888999999888652
Q ss_pred CCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHH
Q 000124 679 EIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALA 749 (2138)
Q Consensus 679 GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALa 749 (2138)
..+.|..++.+.+..||..++..+. .+.|..| ++++..|+..+...|+
T Consensus 195 -~~~~L~~Ll~D~d~~VR~~aa~~l~---------------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 195 -RGDDLLELLHDPDWTVRLAAVEHAS---------------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp -CGGGGGGGGGCSSHHHHHHHHHHSC---------------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred -CHHHHHHHHcCCCHHHHHHHHHcCC---------------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 1245778889999999998886531 2345555 8889999998876654
No 149
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=94.38 E-value=0.44 Score=60.40 Aligned_cols=217 Identities=13% Similarity=0.162 Sum_probs=146.2
Q ss_pred hhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhC--CCHHHHHHHh-c--------cC-CHHHHHHHHHHHHH
Q 000124 638 GLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATD--EIVNPCMRLL-T--------SN-TQMVATQSARALGA 705 (2138)
Q Consensus 638 aI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~--GaV~~Lv~LL-~--------dg-s~~Vk~~AA~ALan 705 (2138)
....|+.-+-++++++|-.|+.+|..+........+..... +..-.|+-++ - |. -..||+.|+++|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 34555666667899999999999999976432211111111 2222232222 1 11 12699999999999
Q ss_pred hcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHH
Q 000124 706 LSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNA 785 (2138)
Q Consensus 706 La~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~A 785 (2138)
+ .+.+. . ..++..|+..+.....+++.-++-.|..+. +.... -.+.++.++..|.+.+++||..|
T Consensus 255 L-~hLp~--e-------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL~~--Ld~Vv~aVL~GL~D~DDDVRAVA 319 (800)
T 3oc3_A 255 I-YPLIG--P-------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFVED--KDGLCRKLVSLLSSPDEDIKLLS 319 (800)
T ss_dssp H-TTTSC--S-------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGCCC--HHHHHHHHHHHTTCSSHHHHHHH
T ss_pred H-HhCCh--h-------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHHHH--HHHHHHHHHhhcCCcccHHHHHH
Confidence 9 75554 2 235566666667888999999999999981 11111 35678888889999999999999
Q ss_pred HHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCcccCCcccccccCCCchHH
Q 000124 786 SRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEP 865 (2138)
Q Consensus 786 a~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~ 865 (2138)
+.+|.-++.. +. -...+..+.++|...++-..........|+.|.+.+.. . ...+.-++.
T Consensus 320 AetLiPIA~p----~~------l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~-a---------~~dp~LVPR 379 (800)
T 3oc3_A 320 AELLCHFPIT----DS------LDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE-L---------SIPPERLKD 379 (800)
T ss_dssp HHHHTTSCCS----ST------HHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT-C---------CCCSGGGGG
T ss_pred HHHhhhhcch----hh------HHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc-c---------ccChHHHHH
Confidence 9999877721 11 14567778888876554445566677778877764321 1 112355777
Q ss_pred HHHhhhcCChHHHHHHHHHHHHhh
Q 000124 866 LVCCLAEGPPPLQDKAIEILSRLC 889 (2138)
Q Consensus 866 Lv~ll~~~~~~vq~~AieiL~~L~ 889 (2138)
|--++.+.-..||...++.|..++
T Consensus 380 L~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 380 IFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp TGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred HHhhhcCCcHHHHHHHHHHHHHHH
Confidence 888899999999999999998887
No 150
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=93.87 E-value=31 Score=48.00 Aligned_cols=502 Identities=11% Similarity=0.074 Sum_probs=231.4
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhc-----CHH
Q 000124 218 VDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSK-----SIK 292 (2138)
Q Consensus 218 I~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~-----s~e 292 (2138)
++.++..+-+++.+.|..|-..|..+-. ++ ++...+..++..+.+..+|-.|+..|.+...+ +++
T Consensus 18 Le~av~~ly~p~~~~r~~A~~~L~~~q~-sp---------~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~~e 87 (1023)
T 4hat_C 18 LDQVVSTFYQGSGVQQKQAQEILTKFQD-NP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPND 87 (1023)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHH-CT---------TGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSCHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHc-Cc---------cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHH
Confidence 4445555545555577777777766552 22 33444455555556779999999999888653 344
Q ss_pred HHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhh-----cCchhHHHHhhhhcCCCCc-hhhHHHHHH
Q 000124 293 AKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIY-----GGMPALVVYLGELSQSPRL-AAPVADIIG 366 (2138)
Q Consensus 293 ~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIs-----Ggis~LI~~L~elL~~~~s-s~~~A~~L~ 366 (2138)
.+..+. ...++.+.....++. ..+ ....++.....+++.+. ..-+..+..+...++.... ......++.
T Consensus 88 ~~~~Ir-~~Ll~~l~~~~~~~~--~i~--~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~~~~~~~~~L~iL~ 162 (1023)
T 4hat_C 88 HRIGIR-NFVVGMIISMCQDDE--VFK--TQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLK 162 (1023)
T ss_dssp HHHHHH-HHHHHHHHHHHHSHH--HHH--HCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHhcCCcc--ccc--ccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 444443 222333333221111 000 00012333444444443 1223455555555543322 111223333
Q ss_pred HHHHHHHHhhcCCCCC--Ccccc------hhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHH
Q 000124 367 ALAYALMVFEQKSGVD--DEPFD------ARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLI 438 (2138)
Q Consensus 367 aLa~~l~~l~q~~~~~--~~~~~------~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV 438 (2138)
.+......+..+.... +..+. -..+...+..++.......+...++.++......-.. ..+...+.++.++
T Consensus 163 ~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i-~~i~~~~ll~~l~ 241 (1023)
T 4hat_C 163 LLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPY-RYIYETNILELLS 241 (1023)
T ss_dssp HHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCT-HHHHSSSHHHHHH
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCH-HHhcchhHHHHHH
Confidence 3333221111000000 00000 0122244445554433334666677777766443222 2344556777777
Q ss_pred -HHHccCCHHHHHHHHHHHHHhhhccc--h---hhHHhhh--chhHHHH-----------HHHh---cCCchhhHHHHHH
Q 000124 439 -GLITMATADVREYLILSLTKLCRREV--G---IWEAIGK--REGIQLL-----------ISLL---GLSSEQHQEYAVQ 496 (2138)
Q Consensus 439 -~LL~sss~evq~~Aa~aL~~Ls~~s~--~---~~~~I~e--~ggIp~L-----------V~LL---~s~d~~Vr~~Aa~ 496 (2138)
.++. +++.+..|+.+|..+..... + ....+.. .+.++.+ ...+ ...+.+..+.-+.
T Consensus 242 ~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~ 319 (1023)
T 4hat_C 242 TKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAM 319 (1023)
T ss_dssp THHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHH
T ss_pred HHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHH
Confidence 6664 57889999999998876321 1 1111100 0111111 1112 1223444444555
Q ss_pred HHHHHhhcCchhHHHHHhcCC-ch-------HHHHHhhhCCHHHHHHHHHHHHHHhc----C---ChhHHHHHHHcCCcc
Q 000124 497 LIAILTEQVDDSKWAITAAGG-IP-------PLVQLLEAGSQKAREVAAHVLWILCC----H---SEDIRACVESAGAVP 561 (2138)
Q Consensus 497 aL~nLa~~s~e~r~~I~~aGa-Ip-------~LV~LLks~d~~vre~Aa~aL~nLs~----~---sd~~r~~I~e~GaI~ 561 (2138)
.+..++.. ....+..... .+ .|+..-..++.++-..+...=..|.. + ....+..+. ..++
T Consensus 320 l~~~~~e~---~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~--~L~~ 394 (1023)
T 4hat_C 320 FLTTYLAR---NRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICS--QLRL 394 (1023)
T ss_dssp HHHHHHHH---HGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHH--HHHH
T ss_pred HHHHHHHH---HHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH--HHHH
Confidence 55555442 1111211101 11 22222223466665555543333322 0 001111110 1122
Q ss_pred hhhhccccC---------------------ChhHHH-HHHHHHHHHHHhhchhhHHHHHHHh----cC--CCcchHHHHH
Q 000124 562 AFLWLLKSG---------------------GPKGQD-ASAMALTKLIRAADSATINQLLALL----LG--DSPSSKAHVI 613 (2138)
Q Consensus 562 aLv~LLkS~---------------------~~evq~-~Aa~AL~nLs~~~e~~aI~~Li~LL----~~--~d~~V~~~A~ 613 (2138)
.|++-+.-+ +....+ ....+|..++.-...+.++.+...+ .. .+....+.++
T Consensus 395 vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~ 474 (1023)
T 4hat_C 395 VIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLS 474 (1023)
T ss_dssp HHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHH
T ss_pred HHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 222211111 111122 2225555555433335555555544 33 3456678888
Q ss_pred HHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcC-----CCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHh
Q 000124 614 KVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNS-----SNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLL 688 (2138)
Q Consensus 614 ~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks-----~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL 688 (2138)
.|+|.++...... .-... -...++.|+.+++. .+..++..+++++++.+.--..+... =..++..|.+.+
T Consensus 475 ~a~gaIa~~~~~~-~e~~~--l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~--L~~vl~~L~~~l 549 (1023)
T 4hat_C 475 WAIGSISGTMSED-TEKRF--VVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF--LRTVILKLFEFM 549 (1023)
T ss_dssp HHHHHTTTSSCHH-HHHHH--HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHH--HHHHHHHHHHHT
T ss_pred HHHHHHHcCCCch-hHHHH--HHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHH--HHHHHHHHHHHh
Confidence 8888876432221 11111 12357778887753 23345566778887765521111111 123445566666
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHh------cCChhhHHh----hhhcCCHHHHHHHHHHHHHhhC
Q 000124 689 TSNTQMVATQSARALGALSRPTKTKTTNKMSYIA------EGDVKPLIK----LAKTSSIDAAETAVAALANLLS 753 (2138)
Q Consensus 689 ~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~------~G~V~~Lv~----LL~s~s~~Vr~eAl~ALaNLa~ 753 (2138)
.+.++.++..|++|+.+++. ..+..+.. ...+..++. ....-+...+..+..+++.+..
T Consensus 550 ~~~~~~v~~~A~~al~~l~~------~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~ 618 (1023)
T 4hat_C 550 HETHEGVQDMACDTFIKIVQ------KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1023)
T ss_dssp TCSCHHHHHHHHHHHHHHHH------HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHHHHHH------HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 77789999999999999986 34443332 112333333 3333456667788888888876
No 151
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=93.53 E-value=35 Score=47.50 Aligned_cols=226 Identities=12% Similarity=0.082 Sum_probs=124.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcc-CCHHHHHHHHHHHHHhhcCCCCCChhhH
Q 000124 86 MPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDDHVGM 164 (2138)
Q Consensus 86 Vp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~s-ed~eVr~aAa~AL~nLS~~~~nkd~~gr 164 (2138)
++.++..+.+++++.|..|-..|..+-+.+ ++......+|.. .++.+|..|+..|.+......+.-+...
T Consensus 18 Le~av~~ly~p~~~~r~~A~~~L~~~q~sp---------~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~ 88 (1023)
T 4hat_C 18 LDQVVSTFYQGSGVQQKQAQEILTKFQDNP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDH 88 (1023)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHCT---------TGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSCHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHcCc---------cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHHH
Confidence 555566666666667777888887764433 344555566654 5899999999999887652111111222
Q ss_pred HHHHHcCcHHHHHHhhCCCC--CCChhHHHHHHHHHHHHhcCC-CchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHH
Q 000124 165 KIFVTEGVVPTLWDQLNPKN--KQDNVVQGFVTGALRNLCGDK-DGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLA 241 (2138)
Q Consensus 165 e~IveaG~Ip~Ll~LL~s~s--~ed~~V~e~Al~aL~nLcs~~-e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~ 241 (2138)
+..++...+..+.+....+. ...+.++.....++..+.... ..+|. .-++.++..+.+ ++......+.+|.
T Consensus 89 ~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp-----~~l~dL~~~l~~-~~~~~~~~L~iL~ 162 (1023)
T 4hat_C 89 RIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWP-----EFIPELIGSSSS-SVNVCENNMIVLK 162 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCT-----THHHHHHHHTTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhch-----HHHHHHHHHhcC-CHHHHHHHHHHHH
Confidence 33344445555554322110 002345555666777665543 12332 246777887764 4556777888888
Q ss_pred HHHhhcCCC--------cc-hh----hc--cchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHH
Q 000124 242 RLMLAFGDS--------IP-TV----ID--SGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVL 306 (2138)
Q Consensus 242 nLs~~~~e~--------r~-~l----~~--~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~L 306 (2138)
.|...-.+. +. .+ .. ...+..+..++....+..+...+..++.....- -.-..+.+.+-++.+
T Consensus 163 ~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~W--I~i~~i~~~~ll~~l 240 (1023)
T 4hat_C 163 LLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHW--IPYRYIYETNILELL 240 (1023)
T ss_dssp HHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTT--SCTHHHHSSSHHHHH
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh--CCHHHhcchhHHHHH
Confidence 877421110 00 01 00 123344445554444445666666766665542 122345556677777
Q ss_pred H-HhhcCCchhhhhhhhhhhhHHHHHHHHHHhhc
Q 000124 307 I-GAIVAPSKECMQGQRGQALQGHATRALANIYG 339 (2138)
Q Consensus 307 I-~LL~s~s~e~mq~~~~~alqe~Al~ALanIsG 339 (2138)
+ .++.++. ++..|+.||..+.+
T Consensus 241 ~~~~L~~~~-----------~r~~A~ecL~eIv~ 263 (1023)
T 4hat_C 241 STKFMTSPD-----------TRAITLKCLTEVSN 263 (1023)
T ss_dssp HTHHHHSHH-----------HHHHHHHHHHHHHT
T ss_pred HHHHcCCHH-----------HHHHHHHHHHHHHc
Confidence 7 6654322 67788888888765
No 152
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=91.44 E-value=59 Score=45.07 Aligned_cols=509 Identities=15% Similarity=0.121 Sum_probs=233.1
Q ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccC---CHHHHHHHHHHHHHhhhcc-ch-
Q 000124 391 IEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMA---TADVREYLILSLTKLCRRE-VG- 465 (2138)
Q Consensus 391 Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~ss---s~evq~~Aa~aL~~Ls~~s-~~- 465 (2138)
++..+...+.+..+...|..|-.-|..+-.+++.| .....++..+ +..++..++..|.+....- ++
T Consensus 8 v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw---------~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~ 78 (980)
T 3ibv_A 8 VENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGW---------KICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNES 78 (980)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHH---------HHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTT
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChhHH---------HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhh
Confidence 33444344455434447777777777665555433 3445555443 6788888888887655421 12
Q ss_pred ---hhHHhhhchhHHHHHHHhc-CCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCH-HHHHHHHHHH
Q 000124 466 ---IWEAIGKREGIQLLISLLG-LSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQ-KAREVAAHVL 540 (2138)
Q Consensus 466 ---~~~~I~e~ggIp~LV~LL~-s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~-~vre~Aa~aL 540 (2138)
.+..+ +...+..+.+.-. ....-++...+.++..+..+.....+ .+.++.++.++.+++. ........+|
T Consensus 79 ~~~~~~~l-r~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~W----p~~i~~l~~~~~~~~~~~~~~~~LriL 153 (980)
T 3ibv_A 79 NLLELQMI-RDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNW----NDFFASLQGVIAASSQSEFSNFYLKVL 153 (980)
T ss_dssp SHHHHHHH-HHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTC----TTHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred hHHHHHHH-HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccC----chHHHHHHHHhcCCChhHHHHHHHHHH
Confidence 22222 2233333333110 23456888888888888764322222 2467777888776543 2223333333
Q ss_pred HHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh-chhhHHHHHHHh----cCCCcchHHHHHHH
Q 000124 541 WILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA-DSATINQLLALL----LGDSPSSKAHVIKV 615 (2138)
Q Consensus 541 ~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~-e~~aI~~Li~LL----~~~d~~V~~~A~~A 615 (2138)
..+.. + +.+.. + .+ +.+.+.+. .-+....... -..+.+.+..+| ...++.+...+.+|
T Consensus 154 ~~i~E---E----v~~~~-~------~~--~~~~~~r~-~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~ 216 (980)
T 3ibv_A 154 LSIGD---E----IADSL-V------LK--TDVQIQKD-NLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQV 216 (980)
T ss_dssp HHHHH---H----HCCCC-S------CC--CHHHHHHH-HHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhHH---H----HHhcc-c------cc--CHHHHhhh-HHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 33321 1 11000 0 01 11111111 0111111110 011122222222 33556666777777
Q ss_pred HHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcCh--hhhhhhhhCCCHHHHHHHhc--cC
Q 000124 616 LGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQ--DICGSLATDEIVNPCMRLLT--SN 691 (2138)
Q Consensus 616 L~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~--e~r~~Ive~GaV~~Lv~LL~--dg 691 (2138)
++......+... +...+.++.+..++. ++++++.|+.+|..+..... +....+++.=.+...+..+. ++
T Consensus 217 l~s~i~wi~~~~-----i~~~~ll~~l~~~L~--~~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~ 289 (980)
T 3ibv_A 217 YAQWVSWININL-----IVNEPCMNLLYSFLQ--IEELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQST 289 (980)
T ss_dssp HHHHTTTSCHHH-----HHCHHHHHHHHHHTT--SHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----C
T ss_pred HHHHHhhcCHHh-----hhcchHHHHHHHHcC--ChHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccc
Confidence 776654433221 234557888888885 48999999999999987422 22222222100111111121 34
Q ss_pred CHHHHHHHHHHHHHhc------CCCCc-cc-chhhh--HHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCch-----
Q 000124 692 TQMVATQSARALGALS------RPTKT-KT-TNKMS--YIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPD----- 756 (2138)
Q Consensus 692 s~~Vk~~AA~ALanLa------~s~~~-~d-~~r~~--I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e----- 756 (2138)
+.+..+.-++.+..++ ...+. .+ +.+.. -.-.+.++.++.++..++.++...+...+..+.....
T Consensus 290 D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~ 369 (980)
T 3ibv_A 290 DPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSS 369 (980)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhcccc
Confidence 5454433332222221 11110 00 01100 1113577788888888888888877666665542100
Q ss_pred --HHHHH--HhcCcHHHHHHHHhCC-----------C-----HHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHH
Q 000124 757 --IAAEV--LLEDVVSALTRVLAEG-----------T-----SEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLV 816 (2138)
Q Consensus 757 --~r~~I--i~~g~L~~LV~LL~~~-----------~-----~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV 816 (2138)
..... .-...++.+++-+.-+ + .+.|+... .+...+..-. .+.+... . ...+..++
T Consensus 370 ~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~-~~~~l~~-~-~~~i~~~l 445 (980)
T 3ibv_A 370 KELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSID-SSLFSSY-M-YSAITSSL 445 (980)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHC-HHHHHHH-H-HHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcC-hHHHHHH-H-HHHHHHHH
Confidence 00000 0011233333222110 1 03444444 3333332100 0111000 0 00122222
Q ss_pred -Hhhc---cCCCCchhHHHHHHHHHHHhhcccCCcccCCcc-cccccCCCchHHHHHhhh-----cCChHHHHHHHHHHH
Q 000124 817 -DSLN---AMDMNGTDVADALEVVALLARTKQGLNFTYPPW-AALAEVPSSIEPLVCCLA-----EGPPPLQDKAIEILS 886 (2138)
Q Consensus 817 -~LL~---s~~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~-~~~~~~~~~L~~Lv~ll~-----~~~~~vq~~AieiL~ 886 (2138)
+.+. ..++. ....++-+++.++. ++....... ......|.-++.+..++. ..||.++..+.+++.
T Consensus 446 ~~~l~~~~~~~W~--~~EaaL~~l~~iaE---~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~ 520 (980)
T 3ibv_A 446 STAATLSPENSWQ--LIEFALYETYIFGE---GLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILV 520 (980)
T ss_dssp HHHTTSCHHHHHH--HHHHHHHHHHHTTT---TCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHH
T ss_pred HHHhcccCCCCHH--HHHHHHHHHHHHHh---hccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH
Confidence 2221 12233 37778888888774 222110000 000112333445555544 788999999999999
Q ss_pred HhhccCCchhhhhhhcccccHHHHHHHHhc-----cCCceeehhhhHHHHHhcccchhhHHHHHhhcCCcHHHHHHHHH
Q 000124 887 RLCGDQPAVLGDFLMARSSSIGALADRIMH-----SSSLEVRVGGAALLICAAKEHKKQSMDALDLSGYLKPLIYALVD 960 (2138)
Q Consensus 887 ~L~~~~~~~~~~~~~~~~~~i~~La~~il~-----s~~~ev~~~~~~~~i~a~k~~~~~~~~~L~~~g~~~~~i~~Lv~ 960 (2138)
++.. |....+..+..++..++. +....|+..+...+- .|+...=. .+.++++..+..+.+
T Consensus 521 rys~--------~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~----~f~~~~~~--~L~~~~~~il~~l~~ 585 (980)
T 3ibv_A 521 RYAS--------FFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFY----RFVKSIKK--QVVNYTESSLAMLGD 585 (980)
T ss_dssp HTGG--------GGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHH----HHHHHTTT--TCSSSHHHHHHHTTG
T ss_pred HHHH--------HHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHH----HHHHHhhH--HhhhHHHHHHHHHHH
Confidence 9865 333455677788888776 344556666665552 22222111 234666666655443
No 153
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=90.92 E-value=5.7 Score=46.79 Aligned_cols=170 Identities=15% Similarity=0.050 Sum_probs=114.8
Q ss_pred hHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhc----cccCChhHHHHHHHHHHHHHHhh-----
Q 000124 519 PPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWL----LKSGGPKGQDASAMALTKLIRAA----- 589 (2138)
Q Consensus 519 p~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~L----LkS~~~evq~~Aa~AL~nLs~~~----- 589 (2138)
+.+...|.+.+..-+..+...|......+ .+..+. .+..++.. +.+.++.+...+...|..+...-
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~--~~~~~~---~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTS--PRSLLS---NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHC--HHHHHH---THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhC--hHHHHH---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 34555566666666666666665543211 122221 22223332 23678888888888888765321
Q ss_pred ---c---hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHH
Q 000124 590 ---D---SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLAD 663 (2138)
Q Consensus 590 ---e---~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALan 663 (2138)
+ ...+|.|+.-+.+..+.++..+...+..+....+. ....+.+..-+++.|..+|+.+...+..
T Consensus 124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~----------~~v~~~l~~g~ksKN~R~R~e~l~~l~~ 193 (266)
T 2of3_A 124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP----------LKMTPMLLDALKSKNARQRSECLLVIEY 193 (266)
T ss_dssp CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH----------HHHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH----------HHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 1 34679999999999999999988888776543222 1246677778899999999999999998
Q ss_pred HhhcChhhhhhhhhCCCH---HHHHHHhccCCHHHHHHHHHHHHHhcC
Q 000124 664 LFSMRQDICGSLATDEIV---NPCMRLLTSNTQMVATQSARALGALSR 708 (2138)
Q Consensus 664 L~s~~~e~r~~Ive~GaV---~~Lv~LL~dgs~~Vk~~AA~ALanLa~ 708 (2138)
+... .... ...++ +.+.+++.|.+..+|..|..++..+-.
T Consensus 194 li~~-~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 194 YITN-AGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHHH-HCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHh-cCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 8652 1111 24578 999999999999999999999987754
No 154
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=90.78 E-value=2 Score=50.20 Aligned_cols=148 Identities=15% Similarity=0.128 Sum_probs=98.0
Q ss_pred hhHHHHhhcCCCHHHHHHHHHHHHHHhhcChh-----hhhhhhhCCCHHHHHH-HhccCCHHHHHHHHHHHHHhcCCCCc
Q 000124 639 LRSLVQVLNSSNEENQEYAASVLADLFSMRQD-----ICGSLATDEIVNPCMR-LLTSNTQMVATQSARALGALSRPTKT 712 (2138)
Q Consensus 639 I~aLV~LLks~s~evre~Aa~ALanL~s~~~e-----~r~~Ive~GaV~~Lv~-LL~dgs~~Vk~~AA~ALanLa~s~~~ 712 (2138)
.+.+...+.+.+..++..++.++..++..... ......-..+++.|+. .+.+..+.++..|..++..+......
T Consensus 57 ~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~ 136 (278)
T 4ffb_C 57 PTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS 136 (278)
T ss_dssp THHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc
Confidence 44455677788999999999999888652111 1111122345566664 47788899999988888777641111
Q ss_pred ccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCC--chH-HHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHH
Q 000124 713 KTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSD--PDI-AAEVLLEDVVSALTRVLAEGTSEGKKNASRAL 789 (2138)
Q Consensus 713 ~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~--~e~-r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL 789 (2138)
.. .++..+...+.+.++.++.+++..|..+... ... -....-...++.+..++.+.++.||..|..++
T Consensus 137 --~~-------~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~ 207 (278)
T 4ffb_C 137 --IT-------QSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLI 207 (278)
T ss_dssp --SH-------HHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHH
T ss_pred --HH-------HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 11 1456677788899999999999999887531 110 00111112455677788999999999999999
Q ss_pred HHhhhc
Q 000124 790 HQLLKH 795 (2138)
Q Consensus 790 ~nL~~~ 795 (2138)
..+...
T Consensus 208 ~~ly~~ 213 (278)
T 4ffb_C 208 VEIYKV 213 (278)
T ss_dssp HHHHTC
T ss_pred HHHHHH
Confidence 887653
No 155
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=90.50 E-value=7 Score=45.62 Aligned_cols=190 Identities=16% Similarity=0.179 Sum_probs=117.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCch---hHHH-HH-hcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChh-
Q 000124 89 FISILRSGTPLAKVNVAATLSVLCKDED---LRLK-VL-LGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHV- 162 (2138)
Q Consensus 89 LV~LLks~~~evr~~Aa~~L~~Ls~~e~---~r~~-v~-~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~- 162 (2138)
|-+-|.+.+-..|..+..-|..+..... .... +. .....+.+-+.+.+.+..+...++.+|..+..........
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 5567788888889998888866543211 1111 11 1234556667888889999999999999988642210100
Q ss_pred hHHHHHHcCcHHHHHHh-hCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHH
Q 000124 163 GMKIFVTEGVVPTLWDQ-LNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLA 241 (2138)
Q Consensus 163 gre~IveaG~Ip~Ll~L-L~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~ 241 (2138)
......-..++|.|++- +.+.. +.++..+..++..++........ .++.+...+.+.++.++..++..|.
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k---~~~~~~a~~~l~~~~~~~~~~~~------~~e~l~~~l~~Knpkv~~~~l~~l~ 164 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSR---ATTKTQSMSCILSLCGLDTSITQ------SVELVIPFFEKKLPKLIAAAANCVY 164 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCC---HHHHHHHHHHHHHHHHTSSSSHH------HHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCcc---HHHHHHHHHHHHHHHHhcCcHHH------HHHHHHHHHhccCHHHHHHHHHHHH
Confidence 11122234567878764 54433 45788888888877654322101 3567778888899999999999999
Q ss_pred HHHhhcC-CCcc-hhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhh
Q 000124 242 RLMLAFG-DSIP-TVIDSGAVKALVQLVGQNNDISVRASAADALEALSS 288 (2138)
Q Consensus 242 nLs~~~~-e~r~-~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~ 288 (2138)
++..... .... ...-..+++.+..++. +.+..+|..|..++..+-.
T Consensus 165 ~~l~~fg~~~~~~k~~l~~i~~~l~k~l~-d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 165 ELMAAFGLTNVNVQTFLPELLKHVPQLAG-HGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHTTTTCCHHHHHHHHGGGHHHHHT-CSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcCCchhHHHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHH
Confidence 8874321 1111 1111124445666666 5788999999888877644
No 156
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=90.28 E-value=11 Score=45.54 Aligned_cols=195 Identities=12% Similarity=0.094 Sum_probs=144.5
Q ss_pred hhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHh--cCCchHHHHHhhhC--CHHHHHHHHHHHHHHhc
Q 000124 470 IGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITA--AGGIPPLVQLLEAG--SQKAREVAAHVLWILCC 545 (2138)
Q Consensus 470 I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~--aGaIp~LV~LLks~--d~~vre~Aa~aL~nLs~ 545 (2138)
+...+.+..|+..+..-+.+.|+.++.+..++.+...+++...++ ..- |.++..|-.+ ++++--.+-..|+....
T Consensus 74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~-peil~~L~~gYe~~diAl~~G~mLRecir 152 (341)
T 1upk_A 74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ-QNILFMLLKGYESPEIALNCGIMLRECIR 152 (341)
T ss_dssp HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC-THHHHHHHHGGGSTTTHHHHHHHHHHHHT
T ss_pred HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcC-HHHHHHHHHhhccchhHhHHHHHHHHHHH
Confidence 344567788888888889999999999999998865544332211 122 4444444333 55555555566777665
Q ss_pred CChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc-----------hhhHHHHHHHhcCCCcchHHHHHH
Q 000124 546 HSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-----------SATINQLLALLLGDSPSSKAHVIK 614 (2138)
Q Consensus 546 ~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e-----------~~aI~~Li~LL~~~d~~V~~~A~~ 614 (2138)
.+...+.+...+.+-.+++....++-++...|-.++..+..... ........+|+.+++.-.+.++..
T Consensus 153 -~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlK 231 (341)
T 1upk_A 153 -HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK 231 (341)
T ss_dssp -SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred -hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 56667777777888888888888998998888888887754311 234566788999999999999999
Q ss_pred HHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000124 615 VLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFS 666 (2138)
Q Consensus 615 AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s 666 (2138)
-|+.+.....+.....+-+....-+..+..++++.+..+|..|..++.-...
T Consensus 232 LLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 232 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeee
Confidence 9999887666666666667777889999999999999999999998876655
No 157
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=89.85 E-value=6 Score=55.31 Aligned_cols=200 Identities=13% Similarity=0.098 Sum_probs=118.9
Q ss_pred chhhhccccCChhHHHHHHHHHHHHHH--hhchhhHHHHHHHhcCC----CcchHHHHHHHHHHHHhhhcchHHHHhhhc
Q 000124 561 PAFLWLLKSGGPKGQDASAMALTKLIR--AADSATINQLLALLLGD----SPSSKAHVIKVLGHVLTMALQEDLVQKGSA 634 (2138)
Q Consensus 561 ~aLv~LLkS~~~evq~~Aa~AL~nLs~--~~e~~aI~~Li~LL~~~----d~~V~~~A~~AL~~La~~~~~~d~v~~~l~ 634 (2138)
..+.++++++.....+ ++.+|..... .++.+.+..+..|++.. ++.++..+.-+++.|.+..-.. ....
T Consensus 359 ~~i~~~i~~~~l~~~e-a~~~l~~~~~~~~Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~----~~~c 433 (1056)
T 1lsh_A 359 LFLKRTLASEQLTSAE-ATQIVASTLSNQQATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCAN----TVSC 433 (1056)
T ss_dssp HHHHHHHHTTCSCHHH-HHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTT----CSSC
T ss_pred HHHHHHHHcCCCCHHH-HHHHHHHhhccCCCCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhcc----CCCC
Confidence 3344445554433333 4344433222 24556777777777653 3345555566666665321000 0001
Q ss_pred ccchhhHHH----HhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhcc-------CCHHHHHHHHHHH
Q 000124 635 ANKGLRSLV----QVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS-------NTQMVATQSARAL 703 (2138)
Q Consensus 635 ~~GaI~aLV----~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~d-------gs~~Vk~~AA~AL 703 (2138)
....++.+. +.+..++.+.+..+..+|.|+.. ...++.|.+++.. ....++..|.+||
T Consensus 434 ~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~-----------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~AL 502 (1056)
T 1lsh_A 434 PDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ-----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMAL 502 (1056)
T ss_dssp CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC-----------hhHHHHHHHhhcCccccccccchHHHHHHHHHH
Confidence 112234444 44556678888999999999986 3466777777642 2457889999999
Q ss_pred HHhcCCCCcccchhhhHHhcCChhhHHhhh--hcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhC-CCHH
Q 000124 704 GALSRPTKTKTTNKMSYIAEGDVKPLIKLA--KTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAE-GTSE 780 (2138)
Q Consensus 704 anLa~s~~~~d~~r~~I~~~G~V~~Lv~LL--~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~-~~~~ 780 (2138)
.++....+. .+-+.|..+. ...+.++|..|+..|.. ++|. ...+..+...+.. .+.+
T Consensus 503 r~~~~~~p~-----------~v~~il~~i~~n~~e~~EvRiaA~~~Lm~--t~P~-------~~~l~~ia~~l~~E~~~Q 562 (1056)
T 1lsh_A 503 RNIAKRDPR-----------KVQEIVLPIFLNVAIKSELRIRSCIVFFE--SKPS-------VALVSMVAVRLRREPNLQ 562 (1056)
T ss_dssp TTGGGTCHH-----------HHHHHHHHHHHCTTSCHHHHHHHHHHHHH--TCCC-------HHHHHHHHHHHTTCSCHH
T ss_pred HHhhhhchH-----------HHHHHHHHHhcCCCCChHHHHHHHHHHHH--HCcC-------HHHHHHHHHHHhhCchHH
Confidence 999752221 1334567777 44788999988888853 2333 1245556665554 6889
Q ss_pred HHHHHHHHHHHhhhcC
Q 000124 781 GKKNASRALHQLLKHF 796 (2138)
Q Consensus 781 Vr~~Aa~AL~nL~~~~ 796 (2138)
|+......|.+++...
T Consensus 563 V~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 563 VASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999998864
No 158
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=89.85 E-value=2.1 Score=50.45 Aligned_cols=132 Identities=7% Similarity=0.091 Sum_probs=91.2
Q ss_pred CCCcchHHHHHHHHHHHHhhhcchHHHHhhhc---ccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCC
Q 000124 603 GDSPSSKAHVIKVLGHVLTMALQEDLVQKGSA---ANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDE 679 (2138)
Q Consensus 603 ~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~---~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~G 679 (2138)
+.+..+...+.+.|..+.......+. .+. ..-.+|.|+.-+.++.+.+|+.+-.++..++.-.+ -..
T Consensus 98 d~N~~v~~~~L~~L~~l~~~l~~~~y---~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~-------~~~ 167 (266)
T 2of3_A 98 ETNPAALIKVLELCKVIVELIRDTET---PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-------PLK 167 (266)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHTTC---CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-------HHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccc---cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC-------HHH
Confidence 55666666677777665433211100 011 12358889998888899999999888877764211 123
Q ss_pred CHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCCh---hhHHhhhhcCCHHHHHHHHHHHHHhh
Q 000124 680 IVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDV---KPLIKLAKTSSIDAAETAVAALANLL 752 (2138)
Q Consensus 680 aV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V---~~Lv~LL~s~s~~Vr~eAl~ALaNLa 752 (2138)
+.+.++.-+++.+..+|..+...+..+...... . ....+ +.+.+++.+.+..||+.|+.++..+-
T Consensus 168 v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~--~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 168 MTPMLLDALKSKNARQRSECLLVIEYYITNAGI--S------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCS--G------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCC--C------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 556677888999999999999999888651111 1 12367 89999999999999999999987654
No 159
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=89.06 E-value=92 Score=43.58 Aligned_cols=226 Identities=13% Similarity=0.096 Sum_probs=126.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcc-CCHHHHHHHHHHHHHhhcCCCCCChhhH
Q 000124 86 MPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDDHVGM 164 (2138)
Q Consensus 86 Vp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~s-ed~eVr~aAa~AL~nLS~~~~nkd~~gr 164 (2138)
++.++..+.+++++.|..|-..|..+-..++. ...+..+|.. .++.+|..|+..|.+......+.-+...
T Consensus 30 Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~a---------w~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~ 100 (1073)
T 3gjx_A 30 LDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDA---------WTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQ 100 (1073)
T ss_dssp HHHHHHTTTCSSHHHHHHHHHHHHTSSCCSCH---------HHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHcCchH---------HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHH
Confidence 55566666667788888888888887554433 3444455655 5899999999999988753211111222
Q ss_pred HHHHHcCcHHHHHHhhCCCC--CCChhHHHHHHHHHHHHhcCC-CchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHH
Q 000124 165 KIFVTEGVVPTLWDQLNPKN--KQDNVVQGFVTGALRNLCGDK-DGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLA 241 (2138)
Q Consensus 165 e~IveaG~Ip~Ll~LL~s~s--~ed~~V~e~Al~aL~nLcs~~-e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~ 241 (2138)
+..++...+..+.+.-..+. ..++.+......++..+.... ...|. .-++.++..+.. ++......+.+|.
T Consensus 101 ~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp-----~fi~dLv~~~~~-~~~~~~~~L~IL~ 174 (1073)
T 3gjx_A 101 CEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWP-----TFISDIVGASRT-SESLCQNNMVILK 174 (1073)
T ss_dssp HHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCT-----THHHHHHHHHHH-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhcc-----HHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 33344445555555433221 124556667777777776542 12332 235666666654 4566777888888
Q ss_pred HHHhhcCCCcc---------h----hhc--cchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHH
Q 000124 242 RLMLAFGDSIP---------T----VID--SGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVL 306 (2138)
Q Consensus 242 nLs~~~~e~r~---------~----l~~--~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~L 306 (2138)
.|...-.+... . +.. ...+..+...+....+..+...+..++..+...- .-..+.+.+-++.|
T Consensus 175 ~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI--~i~~i~~~~ll~~L 252 (1073)
T 3gjx_A 175 LLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWI--PLGYIFETKLISTL 252 (1073)
T ss_dssp HHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTS--CTHHHHSSSHHHHH
T ss_pred HHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhc--CHHHhccchHHHHH
Confidence 88743111100 0 111 1233334444544455566666677777665531 22345566666766
Q ss_pred H-HhhcCCchhhhhhhhhhhhHHHHHHHHHHhhc
Q 000124 307 I-GAIVAPSKECMQGQRGQALQGHATRALANIYG 339 (2138)
Q Consensus 307 I-~LL~s~s~e~mq~~~~~alqe~Al~ALanIsG 339 (2138)
+ ..+.++. .+..|+.||..+.+
T Consensus 253 ~~~~L~~~~-----------~r~aA~dcL~eIv~ 275 (1073)
T 3gjx_A 253 IYKFLNVPM-----------FRNVSLKCLTEIAG 275 (1073)
T ss_dssp HHHTSSSHH-----------HHHHHHHHHHHHHH
T ss_pred HHHhcCChH-----------HHHHHHHHHHHHHh
Confidence 3 5543321 67888889888764
No 160
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=88.21 E-value=1.4 Score=55.97 Aligned_cols=239 Identities=15% Similarity=0.079 Sum_probs=149.2
Q ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhh-----------h-C-CHHHHHHHHHHHHH
Q 000124 476 IQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLE-----------A-G-SQKAREVAAHVLWI 542 (2138)
Q Consensus 476 Ip~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLk-----------s-~-d~~vre~Aa~aL~n 542 (2138)
...|+.-|-++..++|..|+.+|+.+..............+. ...++++- + . -..+|+.|+.+|+.
T Consensus 176 cE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 176 FEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp THHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 455666667888899999999999987643211000011111 33444431 1 1 35789999999999
Q ss_pred HhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh--chhhHHHHHHHhcCCCcchHHHHHHHHHHHH
Q 000124 543 LCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--DSATINQLLALLLGDSPSSKAHVIKVLGHVL 620 (2138)
Q Consensus 543 Ls~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~--e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La 620 (2138)
+ .+-+.- ...+..|+..+.....+++..+.-.|.++..-- -.++++.++..|.+.+++|+..++.+|.-++
T Consensus 255 L-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA 327 (800)
T 3oc3_A 255 I-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP 327 (800)
T ss_dssp H-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCCHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC
T ss_pred H-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc
Confidence 9 543321 233444455557778899999999999982111 1456788888999999999998888876554
Q ss_pred hhhcchHHHHhhhcccchhhHHHHhhcCCC--HHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHH
Q 000124 621 TMALQEDLVQKGSAANKGLRSLVQVLNSSN--EENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQ 698 (2138)
Q Consensus 621 ~~~~~~d~v~~~l~~~GaI~aLV~LLks~s--~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~ 698 (2138)
.++.+ ...+..+...+.+-+ ....-.....|+.|+...+. .......+|.|..++++.-..||..
T Consensus 328 ----~p~~l------~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtITSVR~A 394 (800)
T 3oc3_A 328 ----ITDSL------DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPVPEVRTS 394 (800)
T ss_dssp ----CSSTH------HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSSHHHHHH
T ss_pred ----chhhH------HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCcHHHHHH
Confidence 11111 112444444444321 12233456677888774431 2233478899999999999999999
Q ss_pred HHHHHHHhcCCCCcccchhhhHHhcCChhhH-HhhhhcCCHHHHHHHHHHHH
Q 000124 699 SARALGALSRPTKTKTTNKMSYIAEGDVKPL-IKLAKTSSIDAAETAVAALA 749 (2138)
Q Consensus 699 AA~ALanLa~s~~~~d~~r~~I~~~G~V~~L-v~LL~s~s~~Vr~eAl~ALa 749 (2138)
+.++|..+.. . .+++.+ -++|-..++++++.+..+..
T Consensus 395 VL~TL~tfL~------~--------~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 395 ILNMVKNLSE------E--------SIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHTTTCCC------H--------HHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHh------h--------hHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 9998877751 1 122222 34566678888887777663
No 161
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=87.91 E-value=1.1e+02 Score=43.23 Aligned_cols=144 Identities=10% Similarity=0.010 Sum_probs=92.7
Q ss_pred CCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 000124 33 DPESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISIL--RSGTPLAKVNVAATLSV 110 (2138)
Q Consensus 33 d~~~~~~~V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LL--ks~~~evr~~Aa~~L~~ 110 (2138)
+.+..+..+.++++.......+...|..|-.+|..+-..+ ++...+...| .+.++.+|.-|+.+|.+
T Consensus 5 ~~~~~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p-----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~ 73 (1204)
T 3a6p_A 5 QVNALCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC-----------PICVPCGLRLAEKTQVAIVRHFGLQILEH 73 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC-----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc-----------hHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 3345667788888877666567777899999998875544 2333344433 34578999999999977
Q ss_pred hcc------CchhHHHHHhcCChHHHHHhhcc-------CCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHH
Q 000124 111 LCK------DEDLRLKVLLGGCIPPLLSLLKS-------ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLW 177 (2138)
Q Consensus 111 Ls~------~e~~r~~v~~~G~Ip~Lv~LL~s-------ed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll 177 (2138)
... .++.+..+. ..++..+.. .+..+|.+.+.++..++..+.+.. =.+.++.|+
T Consensus 74 ~I~~~W~~l~~e~k~~Ir-----~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~--------Wp~ll~~L~ 140 (1204)
T 3a6p_A 74 VVKFRWNGMSRLEKVYLK-----NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH--------WPDMLIELD 140 (1204)
T ss_dssp HHHHSGGGSCHHHHHHHH-----HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT--------CTTHHHHHH
T ss_pred HHHHhcccCCHHHHHHHH-----HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc--------chHHHHHHH
Confidence 642 234444443 233344322 368899999999999886321100 024788888
Q ss_pred HhhCCCCCCChhHHHHHHHHHHHHhcC
Q 000124 178 DQLNPKNKQDNVVQGFVTGALRNLCGD 204 (2138)
Q Consensus 178 ~LL~s~s~ed~~V~e~Al~aL~nLcs~ 204 (2138)
+++..+ ....+.++.+|..++..
T Consensus 141 ~~~~~~----~~~~e~~L~iL~~L~Ee 163 (1204)
T 3a6p_A 141 TLSKQG----ETQTELVMFILLRLAED 163 (1204)
T ss_dssp HHHHTC----HHHHHHHHHHHHHHHHH
T ss_pred HHhcCC----HHHHHHHHHHHHHHHHH
Confidence 888642 24567788888888754
No 162
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=86.47 E-value=5.6 Score=45.93 Aligned_cols=144 Identities=13% Similarity=0.095 Sum_probs=99.0
Q ss_pred hhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHH-hhcCCCHHHHHHHHHHHHHHhh-cCh
Q 000124 592 ATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQ-VLNSSNEENQEYAASVLADLFS-MRQ 669 (2138)
Q Consensus 592 ~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~-LLks~s~evre~Aa~ALanL~s-~~~ 669 (2138)
..++....|.+++.++++..++..|+.+ . .. ...++.+.. +...++..|++.++.++..++. .++
T Consensus 71 ~~~~la~~L~~~~~deVR~~Av~lLg~~-~--~~----------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~p 137 (240)
T 3l9t_A 71 YIKKLAFLAYQSDVYQVRMYAVFLFGYL-S--KD----------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEY 137 (240)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHT-T--TS----------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHhc-c--Cc----------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCH
Confidence 3444555666777788888888877654 1 11 124666666 5667799999999999999985 344
Q ss_pred hhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHH
Q 000124 670 DICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALA 749 (2138)
Q Consensus 670 e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALa 749 (2138)
+ ..++.+...+++++..+|+.|...+...+.. +...... .-+++.|-.+..+++.-||.....+|.
T Consensus 138 e--------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k~dp-----~~ll~iL~~L~~D~s~yVrKSVan~Lr 203 (240)
T 3l9t_A 138 K--------KALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFKENP-----NEAIRRIADLKEDVSEYVRKSVGNALR 203 (240)
T ss_dssp T--------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTTTCH-----HHHHHHHHTTTTCSCHHHHHHHHHHHH
T ss_pred H--------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhhcCH-----HHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 3 2567788999999999999998877553321 1100111 114556666778899999999999999
Q ss_pred HhhC-CchHHHHHH
Q 000124 750 NLLS-DPDIAAEVL 762 (2138)
Q Consensus 750 NLa~-~~e~r~~Ii 762 (2138)
.++. +|+.-..++
T Consensus 204 D~SK~~Pd~V~~~~ 217 (240)
T 3l9t_A 204 DISKKFPDLVKIEL 217 (240)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHhhhCHHHHHHHH
Confidence 9997 677544443
No 163
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=84.74 E-value=18 Score=50.54 Aligned_cols=202 Identities=17% Similarity=0.174 Sum_probs=120.6
Q ss_pred chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhh-cchHHHHhhhcccchhhHHHHhhcCC----CHHHHHHHHHHHHHH
Q 000124 590 DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMA-LQEDLVQKGSAANKGLRSLVQVLNSS----NEENQEYAASVLADL 664 (2138)
Q Consensus 590 e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~-~~~d~v~~~l~~~GaI~aLV~LLks~----s~evre~Aa~ALanL 664 (2138)
....+..+.+++..++-.. ..+.+++..+.+.. +. ...+..+..+++++ ++.+++.+..+++.|
T Consensus 354 T~~a~~~i~~~i~~~~l~~-~ea~~~l~~~~~~~~Pt----------~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gsl 422 (1056)
T 1lsh_A 354 TSEALLFLKRTLASEQLTS-AEATQIVASTLSNQQAT----------RESLSYARELLNTSFIRNRPILRKTAVLGYGSL 422 (1056)
T ss_dssp SHHHHHHHHHHHHTTCSCH-HHHHHHHHHHHHTCCCC----------HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCH-HHHHHHHHHhhccCCCC----------HHHHHHHHHHHhCcccccCHHHHHHHHHHHHHH
Confidence 4455666667776655443 33556665444322 22 22466677777653 567788788777777
Q ss_pred hhc---ChhhhhhhhhCCCHHHHH----HHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhc--
Q 000124 665 FSM---RQDICGSLATDEIVNPCM----RLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT-- 735 (2138)
Q Consensus 665 ~s~---~~e~r~~Ive~GaV~~Lv----~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s-- 735 (2138)
... +...| ....++.+. +.+..++..-+..+.+||+|+.. +. .++.|..++..
T Consensus 423 V~k~c~~~~~c----~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p~------------~l~~l~~~l~~~~ 484 (1056)
T 1lsh_A 423 VFRYCANTVSC----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--PN------------SIKKIQRFLPGQG 484 (1056)
T ss_dssp HHHHHTTCSSC----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--GG------------GHHHHHTTSTTSS
T ss_pred HHHHhccCCCC----CHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC--hh------------HHHHHHHhhcCcc
Confidence 542 11111 123344444 44566777888899999999975 32 56667777642
Q ss_pred -----CCHHHHHHHHHHHHHhhCC-chHHHHHHhcCcHHHHHHHH--hCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhh
Q 000124 736 -----SSIDAAETAVAALANLLSD-PDIAAEVLLEDVVSALTRVL--AEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQ 807 (2138)
Q Consensus 736 -----~s~~Vr~eAl~ALaNLa~~-~e~r~~Ii~~g~L~~LV~LL--~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~ 807 (2138)
....++.+|+.||.+++.. |. .+-+.+.++. ...++++|-.|...|.+-. |.
T Consensus 485 ~~~~~~~~rvr~aAi~ALr~~~~~~p~--------~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~---P~--------- 544 (1056)
T 1lsh_A 485 KSLDEYSTRVQAEAIMALRNIAKRDPR--------KVQEIVLPIFLNVAIKSELRIRSCIVFFESK---PS--------- 544 (1056)
T ss_dssp SCCCCSCHHHHHHHHHTTTTGGGTCHH--------HHHHHHHHHHHCTTSCHHHHHHHHHHHHHTC---CC---------
T ss_pred ccccccchHHHHHHHHHHHHhhhhchH--------HHHHHHHHHhcCCCCChHHHHHHHHHHHHHC---cC---------
Confidence 3467889999999999853 22 1233455666 4458999999988885322 11
Q ss_pred hhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhc
Q 000124 808 CRFVVLTLVDSLNAMDMNGTDVADALEVVALLART 842 (2138)
Q Consensus 808 ~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~~ 842 (2138)
...+..+...+.. +.+.++.......+.+++.+
T Consensus 545 -~~~l~~ia~~l~~-E~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 545 -VALVSMVAVRLRR-EPNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp -HHHHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTC
T ss_pred -HHHHHHHHHHHhh-CchHHHHHHHHHHHHHHHhc
Confidence 2345566666653 33445555555566665543
No 164
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=81.85 E-value=7.8 Score=44.78 Aligned_cols=139 Identities=10% Similarity=0.043 Sum_probs=92.5
Q ss_pred HHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhh-ccccCChhHHHHHHHHHHHHHH-hhchhhHHHHHH
Q 000124 522 VQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLW-LLKSGGPKGQDASAMALTKLIR-AADSATINQLLA 599 (2138)
Q Consensus 522 V~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~-LLkS~~~evq~~Aa~AL~nLs~-~~e~~aI~~Li~ 599 (2138)
..+.++....+|..|+..|+.+ ... ...++.+.. +..+.+..+++.++.++..++. ......++.+.+
T Consensus 77 ~~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~~l~~~~~ 146 (240)
T 3l9t_A 77 FLAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKKALPIIDE 146 (240)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTTTHHHHHH
T ss_pred HHHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3445566788999999988877 211 113344444 5567788999999999999985 322346788889
Q ss_pred HhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccc-hhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhh
Q 000124 600 LLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANK-GLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLAT 677 (2138)
Q Consensus 600 LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~G-aI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive 677 (2138)
..++++..++..+.+.+..-... +.. ..+.. .++.|-.+..+++.-+|...+++|..++..+|+-....++
T Consensus 147 W~~d~n~~VRR~Ase~~rpW~~~---~~~----k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~ 218 (240)
T 3l9t_A 147 WLKSSNLHTRRAATEGLRIWTNR---PYF----KENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELK 218 (240)
T ss_dssp HHHCSSHHHHHHHHHHTCSGGGS---TTT----TTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHhhHHHhcc---chh----hcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHH
Confidence 99999999988877665421110 000 00111 3455555666678889999999999999987766555443
No 165
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=81.57 E-value=69 Score=38.83 Aligned_cols=202 Identities=11% Similarity=0.056 Sum_probs=136.2
Q ss_pred HHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhh-----HHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHH
Q 000124 427 WVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIW-----EAIGKREGIQLLISLLGLSSEQHQEYAVQLIAIL 501 (2138)
Q Consensus 427 ~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~-----~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nL 501 (2138)
.+...+.+..|+..+..=+-+.++.++..+.++-+...+.+ ........+..|+..++ ++++-..+-..|+.+
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLRec 150 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLREC 150 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHHHH
Confidence 44555777888888888888999999998888877543322 11222334455555544 444555566667776
Q ss_pred hhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhc-CChhHHHHHHH--cCCcchhhhccccCChhHHHHH
Q 000124 502 TEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCC-HSEDIRACVES--AGAVPAFLWLLKSGGPKGQDAS 578 (2138)
Q Consensus 502 a~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~-~sd~~r~~I~e--~GaI~aLv~LLkS~~~evq~~A 578 (2138)
..+ +.....+...+.+..+.+....++-++-..|..++..|-. |.....+.+.. .......-.++.+++--+++++
T Consensus 151 ir~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQS 229 (341)
T 1upk_A 151 IRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS 229 (341)
T ss_dssp HTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHh-HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHH
Confidence 663 4444445566677788888888899998888888887643 33333333332 1223344578999999999999
Q ss_pred HHHHHHHHHhh-----------chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHh
Q 000124 579 AMALTKLIRAA-----------DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQK 631 (2138)
Q Consensus 579 a~AL~nLs~~~-----------e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~ 631 (2138)
...|+.+..+. +.+-+..++.||++.+..++..+-+....+......+..+..
T Consensus 230 lKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~ 293 (341)
T 1upk_A 230 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILD 293 (341)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHH
Confidence 99999998663 344568899999999999999998888776654444333333
No 166
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=81.35 E-value=26 Score=41.99 Aligned_cols=141 Identities=13% Similarity=0.109 Sum_probs=82.2
Q ss_pred HHHHhhcC-CCHHHHHHHHHHHHHHhhcChhhhhhhhhC--CCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchh
Q 000124 641 SLVQVLNS-SNEENQEYAASVLADLFSMRQDICGSLATD--EIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNK 717 (2138)
Q Consensus 641 aLV~LLks-~s~evre~Aa~ALanL~s~~~e~r~~Ive~--GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r 717 (2138)
.+...+.+ +.+..+..+.+.++|++. ++..+..+... .+++.+...+.+.+..++..++..+.|++.........-
T Consensus 151 ~l~~~~~~~~~p~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~ 229 (304)
T 3ebb_A 151 HLINLLNPKGKPANQLLALRTFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIE 229 (304)
T ss_dssp HHHHTTCTTSCHHHHHHHHHHHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHH
T ss_pred HHHHhcCCCCChHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCch
Confidence 33444433 357779999999999998 66676666543 345555556666788999999999999986211000000
Q ss_pred hhHHhcCChhhHHhhhhc-CCHHHHHHHHHHHHHhhCCc-hHHHHHHhcCcHHHHHHHHhC-CCHHHHHHH
Q 000124 718 MSYIAEGDVKPLIKLAKT-SSIDAAETAVAALANLLSDP-DIAAEVLLEDVVSALTRVLAE-GTSEGKKNA 785 (2138)
Q Consensus 718 ~~I~~~G~V~~Lv~LL~s-~s~~Vr~eAl~ALaNLa~~~-e~r~~Ii~~g~L~~LV~LL~~-~~~~Vr~~A 785 (2138)
. ...+...+..++.. .+.+....++.||++|...+ +.......-|....+-++... ..+++.+.+
T Consensus 230 ~---~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~ 297 (304)
T 3ebb_A 230 G---KAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECC 297 (304)
T ss_dssp H---HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHH
T ss_pred H---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHH
Confidence 0 11133334444443 67888889999999998743 333333333333333333333 234444443
No 167
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=80.97 E-value=27 Score=44.18 Aligned_cols=163 Identities=16% Similarity=0.179 Sum_probs=105.7
Q ss_pred cCChhHHHHHHHHHHHHHHh-h--chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHh
Q 000124 569 SGGPKGQDASAMALTKLIRA-A--DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQV 645 (2138)
Q Consensus 569 S~~~evq~~Aa~AL~nLs~~-~--e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~L 645 (2138)
.+++..++-|+..+..++.+ + ...++..++.|..+++..|+..+.+.|-.++.. +.+.+ ....|+++
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~k------iaDvL~Ql 108 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPR------VADILTQL 108 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHH------HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhh------HHHHHHHH
Confidence 45688888889888888765 3 256889999999999999998887777665432 23332 47889999
Q ss_pred hcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCC
Q 000124 646 LNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGD 725 (2138)
Q Consensus 646 Lks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~ 725 (2138)
|+++++.-....-.+|..|...++. +.+..+..-+..+++.+|+.+..=|..-....+. +.-..-.+.-+
T Consensus 109 Lqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~--~~l~~E~E~~i 178 (507)
T 3u0r_A 109 LQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPD--EVLTKEVEELI 178 (507)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCT--TTSCHHHHHHH
T ss_pred HhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcch--hhccHHHHHHH
Confidence 9999888888888888888775442 3445556556667888888766655433321121 11111223335
Q ss_pred hhhHHhhhhcCCHHHHHHHHHHHHHh
Q 000124 726 VKPLIKLAKTSSIDAAETAVAALANL 751 (2138)
Q Consensus 726 V~~Lv~LL~s~s~~Vr~eAl~ALaNL 751 (2138)
+..+.+.|.+-+.+--.-.+..|..+
T Consensus 179 ~~~ikK~L~DVT~~EF~L~m~lL~~l 204 (507)
T 3u0r_A 179 LTESKKVLEDVTGEEFVLFMKILSGL 204 (507)
T ss_dssp HHHHHHHTTSCCHHHHHHHHHHHHTS
T ss_pred HHHHHHHhccccHHHHHHHHHHHHhc
Confidence 55566677665544444455555544
No 168
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=80.55 E-value=4.7 Score=50.81 Aligned_cols=122 Identities=18% Similarity=0.170 Sum_probs=92.6
Q ss_pred hCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc-hhhHHHHHHHhcCCC
Q 000124 527 AGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-SATINQLLALLLGDS 605 (2138)
Q Consensus 527 s~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e-~~aI~~Li~LL~~~d 605 (2138)
.++...++-|+..+...-.+-...++. ++.+++.++.+.+..+|..|...|..+|.+.. ..+.+.|.+||..++
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~kiaDvL~QlLqtdd 113 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVADILTQLLQTDD 113 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHHHHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHHhccc
Confidence 457899999999999987776665443 78889999999999999999999999987621 467789999999888
Q ss_pred cchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHH
Q 000124 606 PSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADL 664 (2138)
Q Consensus 606 ~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL 664 (2138)
+.....+.++|..+....+ .+.+..|..-+.++++.+|+.+..-|..=
T Consensus 114 ~~E~~~V~~sL~sllk~Dp-----------k~tl~~lf~~i~~~~e~~Rer~lkFi~~k 161 (507)
T 3u0r_A 114 SAEFNLVNNALLSIFKMDA-----------KGTLGGLFSQILQGEDIVRERAIKFLSTK 161 (507)
T ss_dssp HHHHHHHHHHHHHHHHHCH-----------HHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCh-----------HHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 8777777777776654321 12355556555557888998877766543
No 169
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=76.94 E-value=26 Score=40.89 Aligned_cols=165 Identities=15% Similarity=0.077 Sum_probs=109.7
Q ss_pred HHhhcCchhHHHHhhhchHHHHHHHHccCC-----HHHHHHHHHHHHHhhhc-cchhhHHhhhchhHHHHHHHhcCCchh
Q 000124 416 ASLYGNIFLSQWVSHAEAKKVLIGLITMAT-----ADVREYLILSLTKLCRR-EVGIWEAIGKREGIQLLISLLGLSSEQ 489 (2138)
Q Consensus 416 ~~L~~n~~~~~~L~e~~gI~~LV~LL~sss-----~evq~~Aa~aL~~Ls~~-s~~~~~~I~e~ggIp~LV~LL~s~d~~ 489 (2138)
-.++.+++.+..+......-+|.+.+...+ +..+....+.++.+.+. +++.-..+.+.+.+|..++.++.+++-
T Consensus 81 QcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~Gsel 160 (268)
T 2fv2_A 81 QCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSEL 160 (268)
T ss_dssp HHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHH
T ss_pred HHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHH
Confidence 345789999999999988888888887655 56777788888888764 345666777888999999999999999
Q ss_pred hHHHHHHHHHHHhhcCchhHHHHHh--------cCCchHHHHHh-hhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCc
Q 000124 490 HQEYAVQLIAILTEQVDDSKWAITA--------AGGIPPLVQLL-EAGSQKAREVAAHVLWILCCHSEDIRACVESAGAV 560 (2138)
Q Consensus 490 Vr~~Aa~aL~nLa~~s~e~r~~I~~--------aGaIp~LV~LL-ks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI 560 (2138)
-|..|..++.++-.+ +..-..+.. ...+..++.-+ +.+++.+.+...++-..|+. +...++.+.. .+
T Consensus 161 SKtvAtfIlqKIL~d-d~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsd-n~rar~aL~~--~L 236 (268)
T 2fv2_A 161 SKTVATFILQKILLD-DTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSD-NPRAREALRQ--CL 236 (268)
T ss_dssp HHHHHHHHHHHHHHS-HHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT-SHHHHHHHHH--HS
T ss_pred HHHHHHHHHHHHhcc-chhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc-CHHHHHHHHH--hC
Confidence 999999999888763 222222111 11233333333 45588888888888888875 5555555543 22
Q ss_pred chhh------hccccCChhHHHHHHHHHHHH
Q 000124 561 PAFL------WLLKSGGPKGQDASAMALTKL 585 (2138)
Q Consensus 561 ~aLv------~LLkS~~~evq~~Aa~AL~nL 585 (2138)
|.-+ .++ .+++..++.-...+.|+
T Consensus 237 P~~Lrd~tf~~~l-~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 237 PDQLKDTTFAQVL-KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp CGGGTSSTTHHHH-TSCHHHHHHHHHHHHHS
T ss_pred cHHhhChHHHHHH-hcCHHHHHHHHHHHHhc
Confidence 2221 112 24566666555555544
No 170
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=73.10 E-value=74 Score=38.08 Aligned_cols=174 Identities=10% Similarity=-0.001 Sum_probs=93.8
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhc-hHH---HHHHHHc-cCCHHHHHHHHHHHHHhhhccchhh
Q 000124 393 DILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAE-AKK---VLIGLIT-MATADVREYLILSLTKLCRREVGIW 467 (2138)
Q Consensus 393 ~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~-gI~---~LV~LL~-sss~evq~~Aa~aL~~Ls~~s~~~~ 467 (2138)
..+.+++.=+.. .+-+++..+.....++.....+.+.+ +.. .+...+. ...+.-+.-++++++|+..+.. .+
T Consensus 106 ~~l~kil~WP~~--~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~-g~ 182 (304)
T 3ebb_A 106 QILWKAINCPED--IVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA-GQ 182 (304)
T ss_dssp HHHHHHHTSCTT--TCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH-HH
T ss_pred HHHHHHHcCCHH--hHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch-hH
Confidence 444444432221 33344444444445555554444332 222 2233332 2345668888899999988743 33
Q ss_pred HHhhh--chhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhh-CCHHHHHHHHHHHHHHh
Q 000124 468 EAIGK--REGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA-GSQKAREVAAHVLWILC 544 (2138)
Q Consensus 468 ~~I~e--~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks-~d~~vre~Aa~aL~nLs 544 (2138)
..+.. ...++.+...+.+.+..+|..++..+.|++......+..-.....+..+..+++. .+.+....+..+|++|.
T Consensus 183 ~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~ 262 (304)
T 3ebb_A 183 KLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLI 262 (304)
T ss_dssp HHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 33322 2245556666667788999999999999987422111100011122333344443 38888899999999998
Q ss_pred cCChhHHHHHHHcCCcchhhhcccc
Q 000124 545 CHSEDIRACVESAGAVPAFLWLLKS 569 (2138)
Q Consensus 545 ~~sd~~r~~I~e~GaI~aLv~LLkS 569 (2138)
..+.+.++....-|....+-.....
T Consensus 263 ~~~~~~~~lak~l~~~~~v~~~~~~ 287 (304)
T 3ebb_A 263 SDDSNAVQLAKSLGVDSQIKKYSSV 287 (304)
T ss_dssp TTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred hCChhHHHHHHHcCHHHHHHHHHhC
Confidence 7666555554444433333334433
No 171
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=68.95 E-value=30 Score=41.60 Aligned_cols=135 Identities=16% Similarity=0.204 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHh
Q 000124 100 AKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQ 179 (2138)
Q Consensus 100 vr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~L 179 (2138)
+...+..+|..|..+.+...-++..+|+..+..+...++.++..+.++.|...|.. ++ . -..--...+|.++..
T Consensus 259 VvtR~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDa---ks-L--~~t~L~e~LPFi~~~ 332 (619)
T 3c2g_A 259 VIIRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDA---KA-L--AKTPLENILPFLLRL 332 (619)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTC---GG-G--GTSCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecch---HH-H--hhccccccchHHHHH
Confidence 44556667777778888888999999999999999999999999999999999863 11 0 111123478999988
Q ss_pred hCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccC-------CHHHHHHHHHHHHH
Q 000124 180 LNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSD-------NAAAQSNAASLLAR 242 (2138)
Q Consensus 180 L~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~-------s~evq~~A~~aL~n 242 (2138)
+..+. +..+.-..++.|.|...++..-+...+..|+|..|...+... +..-+..+|.+++|
T Consensus 333 i~~h~--eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN 400 (619)
T 3c2g_A 333 IEIHP--DDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICN 400 (619)
T ss_dssp HHHCC--CHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHH
T ss_pred hccCC--CcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHH
Confidence 87543 345777899999999998877767777888999998876542 22344555555544
No 172
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=67.02 E-value=1.1e+02 Score=34.96 Aligned_cols=76 Identities=20% Similarity=0.239 Sum_probs=59.4
Q ss_pred hhchHHHHHHHHcc----C-------CHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHH
Q 000124 430 HAEAKKVLIGLITM----A-------TADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLI 498 (2138)
Q Consensus 430 e~~gI~~LV~LL~s----s-------s~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL 498 (2138)
..+|+..|+..+.. + +.+.+..++.+|..+..+.......+....++..+...+.+.+..+|..++..|
T Consensus 41 ~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL 120 (233)
T 2f31_A 41 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL 120 (233)
T ss_dssp HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 56788777776642 1 346677888999998877656666666677899999999999999999999999
Q ss_pred HHHhhcC
Q 000124 499 AILTEQV 505 (2138)
Q Consensus 499 ~nLa~~s 505 (2138)
..+|...
T Consensus 121 ~~lc~~~ 127 (233)
T 2f31_A 121 SALCILP 127 (233)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 8888744
No 173
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=65.60 E-value=1.7e+02 Score=35.96 Aligned_cols=114 Identities=18% Similarity=0.227 Sum_probs=79.3
Q ss_pred hchHHHHHHHHcc-----------CCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHH
Q 000124 431 AEAKKVLIGLITM-----------ATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIA 499 (2138)
Q Consensus 431 ~~gI~~LV~LL~s-----------ss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~ 499 (2138)
.+|+..|+..+.. .+...+..++.+|..+..+.......+....++..|...+.+.++.++..++..|.
T Consensus 108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~ 187 (383)
T 3eg5_B 108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 187 (383)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 6788888877641 23477888889999988776566666777788999999999999999999999999
Q ss_pred HHhhcCc-hh-HHHHHh----------cCCchHHHHHhhhC-CHHHHHHHHHHHHHHh
Q 000124 500 ILTEQVD-DS-KWAITA----------AGGIPPLVQLLEAG-SQKAREVAAHVLWILC 544 (2138)
Q Consensus 500 nLa~~s~-e~-r~~I~~----------aGaIp~LV~LLks~-d~~vre~Aa~aL~nLs 544 (2138)
.+|.... ++ ...+.+ ..-+..++..|+++ +.+.+..+...+-.+.
T Consensus 188 ~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li 245 (383)
T 3eg5_B 188 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALI 245 (383)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHH
T ss_pred HHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHH
Confidence 8887543 32 333322 24466777777764 5555554444444443
No 174
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=64.66 E-value=2e+02 Score=32.84 Aligned_cols=145 Identities=12% Similarity=0.048 Sum_probs=91.6
Q ss_pred cCcHHHHHHHHhc----C-------CHHHHHHHHHHHHHhccCchhHHHHHhc-CChHHHHHhhccCCHHHHHHHHHHHH
Q 000124 83 AQAMPLFISILRS----G-------TPLAKVNVAATLSVLCKDEDLRLKVLLG-GCIPPLLSLLKSESTDTRKAAAEALY 150 (2138)
Q Consensus 83 aGgVp~LV~LLks----~-------~~evr~~Aa~~L~~Ls~~e~~r~~v~~~-G~Ip~Lv~LL~sed~eVr~aAa~AL~ 150 (2138)
.+|+..|+..|.. + +.+.+..++++|+.+.........+... +++..+...|.++++.++..++..|.
T Consensus 42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~ 121 (233)
T 2f31_A 42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 121 (233)
T ss_dssp HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 4788888888864 1 3466788999999998887777777665 67899999998899999999999999
Q ss_pred HhhcCCCCCChhh-HHHHH----------HcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhH--HH---HH
Q 000124 151 EVSSGGLSDDHVG-MKIFV----------TEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWR--AT---LE 214 (2138)
Q Consensus 151 nLS~~~~nkd~~g-re~Iv----------eaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~--aI---~e 214 (2138)
.+|..+. +.| -+.+. +..-...+++.+.... .......++..+-.+....+.-.. .+ ..
T Consensus 122 ~lc~~~~---~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~--~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~ 196 (233)
T 2f31_A 122 ALCILPQ---PEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGT--SIALKVGCLQLINALITPAEELDFRVHIRSELM 196 (233)
T ss_dssp HHHTCSS---SSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTS--CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHhCCC---CCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCC--hHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 9997632 112 22222 2224455666665432 334454455555555555443211 11 22
Q ss_pred hCcHHHHHHhhcc-CCHHH
Q 000124 215 AGGVDIIVGLLSS-DNAAA 232 (2138)
Q Consensus 215 ~GGI~~Lv~lL~s-~s~ev 232 (2138)
..|+..++.-|.. .+++.
T Consensus 197 ~~Gl~~il~~l~~~~~~~L 215 (233)
T 2f31_A 197 RLGLHQVLQELREIENEDM 215 (233)
T ss_dssp HTTHHHHHHHHHHCCCHHH
T ss_pred HCChHHHHHHHhccCCHHH
Confidence 4566666666655 34443
No 175
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=62.30 E-value=2.4e+02 Score=33.06 Aligned_cols=140 Identities=18% Similarity=0.127 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHhhcC-chhHHHHhhhch-HHHHHH-------HHccCC--HHH--H-HHHHHHHHHhhhccchhhHHhhh
Q 000124 407 VQERVLEAMASLYGN-IFLSQWVSHAEA-KKVLIG-------LITMAT--ADV--R-EYLILSLTKLCRREVGIWEAIGK 472 (2138)
Q Consensus 407 vr~~Aa~AL~~L~~n-~~~~~~L~e~~g-I~~LV~-------LL~sss--~ev--q-~~Aa~aL~~Ls~~s~~~~~~I~e 472 (2138)
.|+.|+..|+.=-+. +++.-.+|+.-| +..|+. .+.... ... + .+|...|...+.+ ++.+..+.+
T Consensus 17 ~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAsh-petr~~Fl~ 95 (268)
T 2fv2_A 17 TRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASH-PETRSAFLA 95 (268)
T ss_dssp THHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHC-TTTHHHHHH
T ss_pred hHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcC-cchhhHHHH
Confidence 467776666554322 466667777754 333322 121111 111 2 3334455566666 677777766
Q ss_pred chhHHHHHHHhcCCc-----hhhHHHHHHHHHHHhhcC-chhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcC
Q 000124 473 REGIQLLISLLGLSS-----EQHQEYAVQLIAILTEQV-DDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCH 546 (2138)
Q Consensus 473 ~ggIp~LV~LL~s~d-----~~Vr~~Aa~aL~nLa~~s-~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~ 546 (2138)
....--|-.+++..+ +-.|..+++.++.|...+ ++.-..+...+.+|..++.++.|+.-.|..|..++..+-.+
T Consensus 96 a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~d 175 (268)
T 2fv2_A 96 AHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD 175 (268)
T ss_dssp TTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHS
T ss_pred ccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhcc
Confidence 655444556665433 347888999999998743 23344455788999999999999999999999999888664
Q ss_pred C
Q 000124 547 S 547 (2138)
Q Consensus 547 s 547 (2138)
+
T Consensus 176 d 176 (268)
T 2fv2_A 176 D 176 (268)
T ss_dssp H
T ss_pred c
Confidence 3
No 176
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=60.72 E-value=3.1e+02 Score=33.77 Aligned_cols=179 Identities=11% Similarity=0.011 Sum_probs=104.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHH-HHHHHhhhcCcHHHHHHHHhc-----------CCHHHHHHHHHHHH
Q 000124 42 AKFLEQLHANMSSPQERELITMRILTIAKAKKE-ARLLIGSHAQAMPLFISILRS-----------GTPLAKVNVAATLS 109 (2138)
Q Consensus 42 ~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~-ak~lI~~~aGgVp~LV~LLks-----------~~~evr~~Aa~~L~ 109 (2138)
..++..|+.. .........+..|..-.+..+. .-+.+. .+|+..|+.+|.. .+...+..++++|+
T Consensus 69 ~~yi~~L~~~-~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~--~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLk 145 (383)
T 3eg5_B 69 MMYIQELRSG-LRDMHLLSCLESLRVSLTSHPVSWVQTFG--AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLK 145 (383)
T ss_dssp HHHHHHHTTT-CCHHHHHHHHHHHHHHHHHSCHHHHHHHH--HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-ccchhHHHHHHHHHHHHhhCccHHHHHHH--HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHH
Confidence 3345555443 2222222344445443333322 223333 4689999999852 13467888999999
Q ss_pred HhccCchhHHHHHhc-CChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhh-HHHHH----------HcCcHHHHH
Q 000124 110 VLCKDEDLRLKVLLG-GCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVG-MKIFV----------TEGVVPTLW 177 (2138)
Q Consensus 110 ~Ls~~e~~r~~v~~~-G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~g-re~Iv----------eaG~Ip~Ll 177 (2138)
.+.........+... .+|..+..+|.+..+.++..+++.|..+|.... +.| -+.+. +..-...++
T Consensus 146 almN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~---~~gG~~~VL~Al~~~~~~~e~~RF~~lv 222 (383)
T 3eg5_B 146 AFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQ---PEDMNERVLEAMTERAEMDEVERFQPLL 222 (383)
T ss_dssp HHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCS---STTHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred HHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcC---cCCcHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 998877777766665 779999999999999999999999999997532 111 22222 223455567
Q ss_pred HhhCCCCCCChhHHHHHHHHHHHHhcCCCchhH--H---HHHhCcHHHHHHhhccC
Q 000124 178 DQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWR--A---TLEAGGVDIIVGLLSSD 228 (2138)
Q Consensus 178 ~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~--a---I~e~GGI~~Lv~lL~s~ 228 (2138)
+.+.... .......++..+-.+....+.... . =...-|+..++.-|+..
T Consensus 223 ~~L~~~~--~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~lr~~ 276 (383)
T 3eg5_B 223 DGLKSGT--SIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREI 276 (383)
T ss_dssp HTTSTTS--CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHTTS
T ss_pred HHHHccC--cHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHHhcC
Confidence 7776532 334454455555555554433211 1 12234666666656553
No 177
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=55.33 E-value=2.6e+02 Score=34.39 Aligned_cols=113 Identities=19% Similarity=0.238 Sum_probs=75.3
Q ss_pred hchHHHHHHHHcc----C-------CHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHH
Q 000124 431 AEAKKVLIGLITM----A-------TADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIA 499 (2138)
Q Consensus 431 ~~gI~~LV~LL~s----s-------s~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~ 499 (2138)
.+|+..|+..+.. + +.+.+..++.+|..+..+.......+....++..+...+.+.++.++..++..|.
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~ 125 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 125 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 6787777776632 1 3566788889999988776666666667778999999999999999999999998
Q ss_pred HHhhcCc-hh-HHHHH----------hcCCchHHHHHhhhC-CHHHHHHHHHHHHHH
Q 000124 500 ILTEQVD-DS-KWAIT----------AAGGIPPLVQLLEAG-SQKAREVAAHVLWIL 543 (2138)
Q Consensus 500 nLa~~s~-e~-r~~I~----------~aGaIp~LV~LLks~-d~~vre~Aa~aL~nL 543 (2138)
.+|.... +. ...+. +..-...++..++++ +.+.+..+...+-.+
T Consensus 126 alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~l 182 (386)
T 2bnx_A 126 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL 182 (386)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 8887443 22 22222 123455677777643 455554444333333
No 178
>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=54.19 E-value=16 Score=39.61 Aligned_cols=127 Identities=13% Similarity=0.047 Sum_probs=88.4
Q ss_pred cCCceEEEEEeccccc---ccccCCCCceEEEEecCCC-Ccc-ccccccCCCCCccccceeeecCCCC------CCeEEE
Q 000124 2007 CLPGCLTVTIKRGNNL---KQTMGTTNAFCRLTIGNGP-PRQ-TKVVSHSISPEWKEGFTWAFDVPPK------GQKLHI 2075 (2138)
Q Consensus 2007 ~~~g~l~v~v~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~-t~~~~~~~~p~w~~~f~~~~~~~p~------~~~l~~ 2075 (2138)
+=-+++-+-|.++.== -..+|.++|..-.+..=-. +-+ |-|++ ..+|..|=+=+|.++.-.. +..+.|
T Consensus 15 ~gEnlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~l 93 (156)
T 2yrb_A 15 RGENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTITL 93 (156)
T ss_dssp SSCEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEEE
T ss_pred CCCcEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEEE
Confidence 3344566777766522 2234677886555443333 334 66666 9999999999999964311 126788
Q ss_pred EEeecCCCCCcccceEEEEeccee-ecceecceeecCCCCCCCCCccceEEEEEecCCCC
Q 000124 2076 ICKSKNTFGKSTLGKVTIQIDKVV-TEGVYSGLFNLNHDNNKDSSSRTLEIEIIWSNRIS 2134 (2138)
Q Consensus 2076 ~~~~~~~~~k~~~g~~~~~~~~v~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~~ 2134 (2138)
|+.-.-.-..+.+|++.|.|.+++ ..+++.+.-+|.+.+++-...++++..++|+-..+
T Consensus 94 ELhqa~g~~~~tla~~~I~l~~lLe~~~~i~g~~~L~g~~g~~~~~G~LeywiRL~~Pi~ 153 (156)
T 2yrb_A 94 EVHQAYSTEYETIAACQLKFHEILEKSGRIFCTASLIGTKGDIPNFGTVEYWFRLRVSGP 153 (156)
T ss_dssp EEEEECSSCEEEEEEEEECCSHHHHCCSCEEEEEEECBSSSCCTTSEEEEEEEEEEECCC
T ss_pred EEEEeeCCCceEEEEEEEEhHHhhCcCCceEEEEEEEcCCCCcceEEEEEEEEEEecccC
Confidence 888776567889999999999999 47789998899987222146899999999876543
No 179
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=50.69 E-value=1.9e+02 Score=35.07 Aligned_cols=124 Identities=7% Similarity=0.034 Sum_probs=90.4
Q ss_pred hhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhc-CCchhhHHHHHH
Q 000124 418 LYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLG-LSSEQHQEYAVQ 496 (2138)
Q Consensus 418 L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~-s~d~~Vr~~Aa~ 496 (2138)
+..++..-..+...+|+..+...+...+.++-......|...+... ..+. .--..-+|-+++.++ .+++++...+.+
T Consensus 270 LmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDak-sL~~-t~L~e~LPFi~~~i~~h~eDdvvYSGTG 347 (619)
T 3c2g_A 270 LLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAK-ALAK-TPLENILPFLLRLIEIHPDDEVIYSGTG 347 (619)
T ss_dssp HCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCG-GGGT-SCCTTHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchH-HHhh-ccccccchHHHHHhccCCCcceEEecch
Confidence 3444455567888999999999999999999999999888777542 2111 112345677777775 667788899999
Q ss_pred HHHHHhhcCchhHHHHHhcCCchHHHHHhhhC-------CHHHHHHHHHHHHHH
Q 000124 497 LIAILTEQVDDSKWAITAAGGIPPLVQLLEAG-------SQKAREVAAHVLWIL 543 (2138)
Q Consensus 497 aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~-------d~~vre~Aa~aL~nL 543 (2138)
.|.|...|....+...+..|+++.|-...... +..-+..+|++++|-
T Consensus 348 FLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~ 401 (619)
T 3c2g_A 348 FLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC 401 (619)
T ss_dssp HHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence 99999987777777777889999888765321 344566777777764
No 180
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=49.64 E-value=2.7e+02 Score=32.48 Aligned_cols=160 Identities=14% Similarity=0.147 Sum_probs=100.5
Q ss_pred hhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhccC-
Q 000124 36 STMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKD- 114 (2138)
Q Consensus 36 ~~~~~V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~~~evr~~Aa~~L~~Ls~~- 114 (2138)
++-..|..++...+.. ++ .+|...++....+..+++.. +. ...++.++.+-.+.+.++|.-.+..+...+..
T Consensus 12 ~~~~~v~~lln~A~~~-~~-~~kl~~L~qa~el~~~~dp~--ll---~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k 84 (257)
T 3gs3_A 12 TARAKVVDWCNELVIA-SP-STKCELLAKVQETVLGSCAE--LA---EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK 84 (257)
T ss_dssp HHHHHHHHHHHHHTTC-CH-HHHHHHHHHHHHHHTTTTGG--GH---HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHhhhc-Cc-HHHHHHHHHHHHHHHccCHh--HH---HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH
Confidence 3344455555544332 23 57888888888887765322 22 24678888877778899999999999777632
Q ss_pred chhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHH
Q 000124 115 EDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFV 194 (2138)
Q Consensus 115 e~~r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~A 194 (2138)
++.. ...++.|..+|+++|+.+.+.+..+..++.. ..++.+...+..+ .-.+..
T Consensus 85 ~~l~-----~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~--------------------~~l~~i~~~~~~~-~~~~~~ 138 (257)
T 3gs3_A 85 VELL-----PHVINVVSMLLRDNSAQVIKRVIQACGSIYK--------------------NGLQYLCSLMEPG-DSAEQA 138 (257)
T ss_dssp GGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH--------------------HHHHHHTTSSSCC-HHHHHH
T ss_pred HHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH--------------------HHHHHHhcCCCCc-chHHHH
Confidence 2222 2456788888888899999988888777763 2222222222111 111222
Q ss_pred HHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHH
Q 000124 195 TGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLM 244 (2138)
Q Consensus 195 l~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs 244 (2138)
...+..+ -..++....+.+..++..|++.+..+.
T Consensus 139 W~~m~~l----------------K~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 139 WNILSLI----------------KAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp HHHHHHH----------------HHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----------------HHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 2222222 245667778888999999999998876
No 181
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=46.49 E-value=8.2e+02 Score=34.51 Aligned_cols=133 Identities=11% Similarity=0.053 Sum_probs=81.1
Q ss_pred CHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhc--cCCHHHHHHHHHHHHHhhcCCCCC-ChhhHHHHHHcCcH
Q 000124 97 TPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLK--SESTDTRKAAAEALYEVSSGGLSD-DHVGMKIFVTEGVV 173 (2138)
Q Consensus 97 ~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~--sed~eVr~aAa~AL~nLS~~~~nk-d~~gre~IveaG~I 173 (2138)
+.+.|..|-..|..+-..+ ++...+...|. +.+..+|..|+..|.+......+. +.. .+..++...+
T Consensus 26 ~~~~r~~Ae~~L~~~~~~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e-~k~~Ir~~ll 95 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEKC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRL-EKVYLKNSVM 95 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHH-HHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhCc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHH-HHHHHHHHHH
Confidence 6677888888887763322 24455554443 358999999999999886421111 222 2333444455
Q ss_pred HHHHHhhCCCCCCChhHHHHHHHHHHHHhcCC-CchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHh
Q 000124 174 PTLWDQLNPKNKQDNVVQGFVTGALRNLCGDK-DGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLML 245 (2138)
Q Consensus 174 p~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~-e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~ 245 (2138)
..+.+.-.......+.++.....++..+.... ...|. ..++.++.++.+ ++..++.++.+|..|+.
T Consensus 96 ~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp-----~ll~~L~~~~~~-~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 96 ELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWP-----DMLIELDTLSKQ-GETQTELVMFILLRLAE 162 (1204)
T ss_dssp HHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCT-----THHHHHHHHHHT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccch-----HHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 55444321110134667777888888877653 23443 246778887766 56678889999999984
No 182
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=45.71 E-value=2.7e+02 Score=34.24 Aligned_cols=125 Identities=16% Similarity=0.173 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhccCch--h-HHHHHh-------
Q 000124 54 SPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDED--L-RLKVLL------- 123 (2138)
Q Consensus 54 s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~--~-r~~v~~------- 123 (2138)
+......++++|..+.....+...++. +.+++..|...|.+.++.++..++.+|..+|..+. . ...+..
T Consensus 71 d~~~~~~~l~CLkalmN~~~Gl~~vl~-~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~ 149 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMNNKFGIKTMLE-TEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 149 (386)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHH-SSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHc-CcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Confidence 345567888999998887766666555 48899999999999999999999999988875433 3 444432
Q ss_pred ---cCChHHHHHhhcc-CCHHHHHHHHHHHHHhhcCCCCCChhh----HHHHHHcCcHHHHHHhhCC
Q 000124 124 ---GGCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDDHVG----MKIFVTEGVVPTLWDQLNP 182 (2138)
Q Consensus 124 ---~G~Ip~Lv~LL~s-ed~eVr~aAa~AL~nLS~~~~nkd~~g----re~IveaG~Ip~Ll~LL~s 182 (2138)
..-+..++..+.+ .+.+.+..++..+-.+..... +-.. |..+...|..+. ++-+..
T Consensus 150 ~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~--dl~~R~~LR~Ef~~~GL~~i-l~~Lr~ 213 (386)
T 2bnx_A 150 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAE--ELDFRVHIRSELMRLGLHQV-LQELRE 213 (386)
T ss_dssp HHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHTTHHHH-HHHHTT
T ss_pred hCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHCChHHH-HHHHhc
Confidence 2457788888875 578888887777777765422 3222 344455555554 455554
No 183
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=34.17 E-value=1.2e+03 Score=32.70 Aligned_cols=228 Identities=15% Similarity=0.182 Sum_probs=104.1
Q ss_pred cHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhc-----CH
Q 000124 217 GVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSK-----SI 291 (2138)
Q Consensus 217 GI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~-----s~ 291 (2138)
.++.++..+-+++++.|..|-..|..+- ...++...+..++..+.+..+|-.|+..|.+...+ ++
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q----------~sp~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~ 98 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHLK----------EHPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPR 98 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTSS----------CCSCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHH----------cCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCH
Confidence 3555666666666677777766665432 12345666666776667889999999999988663 34
Q ss_pred HHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhh-----cCchhHHHHhhhhcCCCCc-hhhHHHHH
Q 000124 292 KAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIY-----GGMPALVVYLGELSQSPRL-AAPVADII 365 (2138)
Q Consensus 292 e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIs-----Ggis~LI~~L~elL~~~~s-s~~~A~~L 365 (2138)
+.|..+. ...++.+.....++. ..+ ....+......+++.+. ..-+..+..+...++.... ......++
T Consensus 99 e~~~~LR-~~Ll~~l~~~~~~~~--~~e--~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~~~~~~~~~L~IL 173 (1073)
T 3gjx_A 99 NQCEGIK-KYVVGLIIKTSSDPT--CVE--KEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMVIL 173 (1073)
T ss_dssp HHHHHHH-HHHHHHHHHHHTCGG--GGT--SCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHccCcc--ccc--cchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4454444 222233332221210 000 00002222333333332 1122233333333321111 11122233
Q ss_pred HHHHHHHHHhhcC-CCCC-Cc----ccc--hhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHH
Q 000124 366 GALAYALMVFEQK-SGVD-DE----PFD--ARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVL 437 (2138)
Q Consensus 366 ~aLa~~l~~l~q~-~~~~-~~----~~~--~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~L 437 (2138)
..+......+... .... +. .+. -..+...+...+.......+...++.++++....-+.. .+...+.+..+
T Consensus 174 ~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~-~i~~~~ll~~L 252 (1073)
T 3gjx_A 174 KLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLG-YIFETKLISTL 252 (1073)
T ss_dssp HHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTH-HHHSSSHHHHH
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHH-HhccchHHHHH
Confidence 3333221100000 0000 00 000 01222344444544333345566777777765443322 34455666666
Q ss_pred H-HHHccCCHHHHHHHHHHHHHhhhc
Q 000124 438 I-GLITMATADVREYLILSLTKLCRR 462 (2138)
Q Consensus 438 V-~LL~sss~evq~~Aa~aL~~Ls~~ 462 (2138)
+ .++ .+++.+..|+.+|..+...
T Consensus 253 ~~~~L--~~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 253 IYKFL--NVPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp HHHTS--SSHHHHHHHHHHHHHHHHS
T ss_pred HHHhc--CChHHHHHHHHHHHHHHhc
Confidence 3 333 5788999999999988765
No 184
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=29.82 E-value=7e+02 Score=28.94 Aligned_cols=85 Identities=13% Similarity=0.049 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc---hhhHHHHHHHhcCCCcc
Q 000124 531 KAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD---SATINQLLALLLGDSPS 607 (2138)
Q Consensus 531 ~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e---~~aI~~Li~LL~~~d~~ 607 (2138)
+.+-....-...|..+++.. ++ ...++.++.+..+.+.++|+..+..+...+.... ...++.|..|++++++.
T Consensus 30 ~~kl~~L~qa~el~~~~dp~--ll--~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~d~~ 105 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAE--LA--EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQ 105 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGG--GH--HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHHHHHHccCHh--HH--HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 44444445555554433221 11 2345556666667788999999999988875432 34667777888877777
Q ss_pred hHHHHHHHHHHH
Q 000124 608 SKAHVIKVLGHV 619 (2138)
Q Consensus 608 V~~~A~~AL~~L 619 (2138)
+...+..+.+.+
T Consensus 106 V~K~~I~~~~~i 117 (257)
T 3gs3_A 106 VIKRVIQACGSI 117 (257)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 766666665544
No 185
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=29.70 E-value=72 Score=37.12 Aligned_cols=99 Identities=13% Similarity=0.110 Sum_probs=62.1
Q ss_pred CCCHHHHHHHHHHHHHHhhcChh-hhhhhhhCCCHHHHHHHhc----c----CCHHHHHHHHHHHHHhcCCCCcccchhh
Q 000124 648 SSNEENQEYAASVLADLFSMRQD-ICGSLATDEIVNPCMRLLT----S----NTQMVATQSARALGALSRPTKTKTTNKM 718 (2138)
Q Consensus 648 s~s~evre~Aa~ALanL~s~~~e-~r~~Ive~GaV~~Lv~LL~----d----gs~~Vk~~AA~ALanLa~s~~~~d~~r~ 718 (2138)
+.++..+..+.++++|+.. ++. .+..+........++..+. + .+..++..++..+.|++..... .+.
T Consensus 101 ~~~~~~~ml~lR~l~NlF~-~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~---~~~ 176 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFN-NENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTK---GNS 176 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTT-CTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHT---SCS
T ss_pred CCchhHHHHHHHHHHHccc-CCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhh---ccc
Confidence 4578899999999999998 455 4544444333344444432 1 2456888999999999861110 000
Q ss_pred hHHhcCChhhHHhhhhc---------CCHHHHHHHHHHHHHhhC
Q 000124 719 SYIAEGDVKPLIKLAKT---------SSIDAAETAVAALANLLS 753 (2138)
Q Consensus 719 ~I~~~G~V~~Lv~LL~s---------~s~~Vr~eAl~ALaNLa~ 753 (2138)
+.+....+++++.. .+.+....++.||++|..
T Consensus 177 ---~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 177 ---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp ---CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 12233445555542 367788889999999975
No 186
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=28.48 E-value=3e+02 Score=34.37 Aligned_cols=105 Identities=12% Similarity=0.127 Sum_probs=66.2
Q ss_pred CCCHHHHHHHHHHHHHHhhcChhhhhhhhhC-CCHHHHHHHhcc--------CCHHHHHHHHHHHHHhcCCCCcccchhh
Q 000124 648 SSNEENQEYAASVLADLFSMRQDICGSLATD-EIVNPCMRLLTS--------NTQMVATQSARALGALSRPTKTKTTNKM 718 (2138)
Q Consensus 648 s~s~evre~Aa~ALanL~s~~~e~r~~Ive~-GaV~~Lv~LL~d--------gs~~Vk~~AA~ALanLa~s~~~~d~~r~ 718 (2138)
+..+..+..+.++++|+.. ++.....+... .....++..+.+ .+..++..++..+.|++..... .+.
T Consensus 273 ~~~~an~MltlR~laNlF~-~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~---~~~ 348 (425)
T 3pst_A 273 NKNITLTMLTVRILVNCFN-NENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTK---GNS 348 (425)
T ss_dssp CSSHHHHHHHHHHHHHHTT-CTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHH---SCS
T ss_pred CCChhHHHHHHHHHHHhcC-CcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhc---ccc
Confidence 4578899999999999998 55533333332 234555655421 2456888889999999861110 010
Q ss_pred hHHhcCChhhHHhhhh---------cCCHHHHHHHHHHHHHhhC-CchHHH
Q 000124 719 SYIAEGDVKPLIKLAK---------TSSIDAAETAVAALANLLS-DPDIAA 759 (2138)
Q Consensus 719 ~I~~~G~V~~Lv~LL~---------s~s~~Vr~eAl~ALaNLa~-~~e~r~ 759 (2138)
+......+..++. ..+.+....++.||++|.. ++..+.
T Consensus 349 ---~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~~~~ 396 (425)
T 3pst_A 349 ---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQ 396 (425)
T ss_dssp ---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred ---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 1223445666665 2578888899999999985 444443
No 187
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=26.16 E-value=2.4e+02 Score=32.75 Aligned_cols=102 Identities=11% Similarity=0.060 Sum_probs=63.5
Q ss_pred cCCHHHHHHHHHHHHHhhCCch-HHHHHHhcCcHHHHHHHH----hC----CCHHHHHHHHHHHHHhhhcCCCchhhhhh
Q 000124 735 TSSIDAAETAVAALANLLSDPD-IAAEVLLEDVVSALTRVL----AE----GTSEGKKNASRALHQLLKHFPVGDVLKGN 805 (2138)
Q Consensus 735 s~s~~Vr~eAl~ALaNLa~~~e-~r~~Ii~~g~L~~LV~LL----~~----~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~ 805 (2138)
+.++..+.-++++++|+..++. .+..+..+.....+...+ .+ .+..+|-.++..+.|++.... . .
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~-----~-~ 174 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVT-----K-G 174 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHH-----T-S
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHh-----h-c
Confidence 4567788889999999999988 566555443344444433 11 256788899999999886410 0 0
Q ss_pred hhhhhhHHHHHHhhcc----C---CCCchhHHHHHHHHHHHhhc
Q 000124 806 AQCRFVVLTLVDSLNA----M---DMNGTDVADALEVVALLART 842 (2138)
Q Consensus 806 i~~~gav~~LV~LL~s----~---~~~~~~~~~AL~ALa~La~~ 842 (2138)
.........+++.+.. . +++......++-++|+|...
T Consensus 175 ~~~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~ 218 (253)
T 3gae_A 175 NSDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 218 (253)
T ss_dssp CSCTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhC
Confidence 0012233445555542 2 23445678888899999864
No 188
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=25.69 E-value=1.4e+02 Score=41.64 Aligned_cols=99 Identities=18% Similarity=0.250 Sum_probs=66.5
Q ss_pred hhhhcCCceEEEEEecccccc-cccCCCCceEEEEecCCCCc-----cccccccCCCCCccccceeee--cCCCCCCeEE
Q 000124 2003 SLLHCLPGCLTVTIKRGNNLK-QTMGTTNAFCRLTIGNGPPR-----QTKVVSHSISPEWKEGFTWAF--DVPPKGQKLH 2074 (2138)
Q Consensus 2003 ~~~~~~~g~l~v~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~t~~~~~~~~p~w~~~f~~~~--~~~p~~~~l~ 2074 (2138)
++-+ +..-+.|+|..+.++. +.....+-||+..+=-|.+. +|+.+. ..+|.|||..+|.+ -+=|.+-+|-
T Consensus 349 slw~-~~~~f~v~i~~~~~~n~~~~~~~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~i~i~dLPr~arL~ 426 (1091)
T 3hhm_A 349 SLWV-INSALRIKILCATYVNVNIRDIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYDIYIPDLPRAARLC 426 (1091)
T ss_dssp EGGG-CCSEEEEEEEEESCCCCCCSSCCCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEEEEGGGCCTTCEEE
T ss_pred chhh-CCCCEEEEEEEecCCCCCccccceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEecCccccCChhcEEE
Confidence 3444 3677999999998883 22234566877766555443 466555 35788999877754 5678999999
Q ss_pred EEEeecCCC-----CCcccceEEEEecc---eeecce
Q 000124 2075 IICKSKNTF-----GKSTLGKVTIQIDK---VVTEGV 2103 (2138)
Q Consensus 2075 ~~~~~~~~~-----~k~~~g~~~~~~~~---v~~~~~ 2103 (2138)
+.+|+.... .+.-+|.|+++|-| ....|+
T Consensus 427 ~tl~~~~~~~~~~~~~~~lg~~n~~lfd~~~~L~~G~ 463 (1091)
T 3hhm_A 427 LSICSVKGRKGAKEEHCPLAWGNINLFDYTDTLVSGK 463 (1091)
T ss_dssp EEECCCCCCC-------CCEEEEEESBCTTCBBCCEE
T ss_pred EEEEEecCccCcccccceeEEeeeeeEccCCeEEcCC
Confidence 999986432 23469999999865 444444
No 189
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=25.55 E-value=1e+03 Score=29.30 Aligned_cols=160 Identities=17% Similarity=0.160 Sum_probs=103.5
Q ss_pred hhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcc-C
Q 000124 36 STMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCK-D 114 (2138)
Q Consensus 36 ~~~~~V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~~~evr~~Aa~~L~~Ls~-~ 114 (2138)
.+-..|..++...+..+. .+|...++...++..+++.. .. .+.++.++++-.+.+.++|.-++..|...|. .
T Consensus 22 ~~~~~v~~lln~A~~~~~--~~Kl~~L~q~~EL~l~~dps---Ll--~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~ 94 (386)
T 3o2t_A 22 TTSERVVDLLNQAALITN--DSKITVLKQVQELIINKDPT---LL--DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRD 94 (386)
T ss_dssp CHHHHHHHHHHHHHHCCS--THHHHHHHHHHHHHHTTCGG---GG--GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHhhhccCh--HHHHHHHHHHHHHHhccCHH---HH--HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH
Confidence 444667777777766433 35888899999987654221 22 3689999999988899999999999977764 2
Q ss_pred chhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHH
Q 000124 115 EDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFV 194 (2138)
Q Consensus 115 e~~r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~A 194 (2138)
.+.. ..+++.|..+|.++|+.+.+.+..+..++.. ..++.+..+...+ ...+.+
T Consensus 95 ~el~-----~~~l~~L~~LL~d~d~~V~K~~I~~~tslYp--------------------l~f~~i~~~~~~~-~~~e~~ 148 (386)
T 3o2t_A 95 IELL-----LKLIANLNMLLRDENVNVVKKAILTMTQLYK--------------------VALQWMVKSRVIS-ELQEAC 148 (386)
T ss_dssp GGGH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH--------------------HHHHHHHHC-CCC-HHHHHH
T ss_pred HHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH--------------------HHHHHHhcCCCcc-hhHHHH
Confidence 2221 2446788888888899999988888877663 1111111111111 111222
Q ss_pred HHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHH
Q 000124 195 TGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLM 244 (2138)
Q Consensus 195 l~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs 244 (2138)
...+..+ -..++....+.+..++..|++++..+.
T Consensus 149 W~~m~~l----------------K~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 149 WDMVSAM----------------AGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp HHHHHHH----------------HHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----------------HHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 2222222 245666677888999999999998876
No 190
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=23.89 E-value=71 Score=43.92 Aligned_cols=98 Identities=10% Similarity=0.152 Sum_probs=67.6
Q ss_pred hcCCceEEEEEecccccccccCCCCceEEEEecCC-----CCccccccccCCCCCccccceee--ecCCCCCCeEEEEEe
Q 000124 2006 HCLPGCLTVTIKRGNNLKQTMGTTNAFCRLTIGNG-----PPRQTKVVSHSISPEWKEGFTWA--FDVPPKGQKLHIICK 2078 (2138)
Q Consensus 2006 ~~~~g~l~v~v~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~t~~~~~~~~p~w~~~f~~~--~~~~p~~~~l~~~~~ 2078 (2138)
-.+..-+.|+|..+.++-.. ...+=||...+=-| .+++|+-+...-+|.|||..+|. +-+=|.+-+|-+.+|
T Consensus 213 ~~~~~~f~i~i~~~~~~~~~-~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~ 291 (940)
T 2wxf_A 213 WSLEQPFSIELIEGRKVNAD-ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALY 291 (940)
T ss_dssp TTCCSEEEEEEEEEECCCC----CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEE
T ss_pred hhcCCceEEEEEEecccCCC-CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEE
Confidence 34567899999999998544 45566766544333 45567777778899999977774 456689999999999
Q ss_pred ecCCC--C-----------CcccceEEEEecc---eeeccee
Q 000124 2079 SKNTF--G-----------KSTLGKVTIQIDK---VVTEGVY 2104 (2138)
Q Consensus 2079 ~~~~~--~-----------k~~~g~~~~~~~~---v~~~~~~ 2104 (2138)
+...- | ..-+|.++++|-| ....|++
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~~~l~~G~~ 333 (940)
T 2wxf_A 292 AVVEKAKKARSTKKKSKKADCPIAWANLMLFDYKDQLKTGER 333 (940)
T ss_dssp EEC----------------CEEEEEEEEESBCTTSBBCCEEE
T ss_pred EecCCccCccccccccccccceEEEEeeeEECCcCccccCCE
Confidence 85221 1 2378999999866 4555554
No 191
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=22.27 E-value=3e+02 Score=33.72 Aligned_cols=104 Identities=13% Similarity=0.122 Sum_probs=64.2
Q ss_pred CCCHHHHHHHHHHHHHHhhcChhhhhhhhhCC-CHHHHHHHhc--------cCCHHHHHHHHHHHHHhcCCCCcccchhh
Q 000124 648 SSNEENQEYAASVLADLFSMRQDICGSLATDE-IVNPCMRLLT--------SNTQMVATQSARALGALSRPTKTKTTNKM 718 (2138)
Q Consensus 648 s~s~evre~Aa~ALanL~s~~~e~r~~Ive~G-aV~~Lv~LL~--------dgs~~Vk~~AA~ALanLa~s~~~~d~~r~ 718 (2138)
+..+..+..+.++++|+.. ++.....+.... ....++..+. ..+..++..++..+.|++..... .+.
T Consensus 210 ~~~~~n~MltlR~laNlF~-~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~---~~~ 285 (362)
T 3l3f_X 210 NKNITLTMLTVRILVNCFN-NENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTK---GNS 285 (362)
T ss_dssp CSSHHHHHHHHHHHHHHTT-CTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHH---TCS
T ss_pred CCChhHHHHHHHHHHHhcc-CcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhc---ccc
Confidence 4578899999999999998 455333333321 2233444331 12456888889999999861110 010
Q ss_pred hHHhcCChhhHHhhhh---------cCCHHHHHHHHHHHHHhhC-CchHH
Q 000124 719 SYIAEGDVKPLIKLAK---------TSSIDAAETAVAALANLLS-DPDIA 758 (2138)
Q Consensus 719 ~I~~~G~V~~Lv~LL~---------s~s~~Vr~eAl~ALaNLa~-~~e~r 758 (2138)
+......+..++. ..+.+....++.||++|.. ++..+
T Consensus 286 ---~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~~~~ 332 (362)
T 3l3f_X 286 ---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLR 332 (362)
T ss_dssp ---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred ---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 1223445666665 2578888899999999985 44433
No 192
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=21.54 E-value=1e+03 Score=28.49 Aligned_cols=105 Identities=10% Similarity=0.111 Sum_probs=70.0
Q ss_pred hhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhC--CCHHHHHHHhcc-------CCHHHHHHHHHHHHHhcCC
Q 000124 639 LRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATD--EIVNPCMRLLTS-------NTQMVATQSARALGALSRP 709 (2138)
Q Consensus 639 I~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~--GaV~~Lv~LL~d-------gs~~Vk~~AA~ALanLa~s 709 (2138)
+..|+ +.....+.+++.|++++......+|+....|.+. ..+..+..-|.. ....+.+.-..+|..|...
T Consensus 73 L~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~ 151 (315)
T 3qml_C 73 LANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVT 151 (315)
T ss_dssp HHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCC
T ss_pred HHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcC
Confidence 44444 3334577899999999999998899988887664 455555544433 2345566667777777753
Q ss_pred CCcccchhhhHHhcCChhhHHhhhhcC--CHHHHHHHHHHHHHhh
Q 000124 710 TKTKTTNKMSYIAEGDVKPLIKLAKTS--SIDAAETAVAALANLL 752 (2138)
Q Consensus 710 ~~~~d~~r~~I~~~G~V~~Lv~LL~s~--s~~Vr~eAl~ALaNLa 752 (2138)
... . ....+..|.+++... +..++..++..+..+.
T Consensus 152 ~~~---F-----~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 152 SED---L-----PIYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp STT---C-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred hHh---h-----hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 211 1 133567778877776 8889988888887765
No 193
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=21.44 E-value=83 Score=34.52 Aligned_cols=78 Identities=12% Similarity=0.182 Sum_probs=65.9
Q ss_pred CcccchHHHHHhhcCChHHHHHHHHHHHHHHhcc--cccccchhhhhhhhhhHHHhhc------cchhhHHHHHHHHHHH
Q 000124 1555 TPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQ--EHFQQDITTKNAVVPLVQLAGI------GILNLQQTAVKALEKI 1626 (2138)
Q Consensus 1555 ~~~~~i~~l~~~l~s~~~~~~~~~~~ll~~l~~~--~~~~~~~~~~~a~~pl~~~~~~------~~~~~~~~~~~~~~~~ 1626 (2138)
.+..|+..|..-|.++...+|-.|=.||+.+..| .+|+..+.++-.+--|++++.- -=..++++++.-++..
T Consensus 47 ~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 126 (171)
T 1juq_A 47 GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSW 126 (171)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 4667888999999999999999999999999999 8999999999998889999852 2357888888888877
Q ss_pred hhhhhh
Q 000124 1627 STSWPK 1632 (2138)
Q Consensus 1627 ~~~~~~ 1632 (2138)
+.+.|+
T Consensus 127 ~~~f~~ 132 (171)
T 1juq_A 127 TMALPE 132 (171)
T ss_dssp HHHCTT
T ss_pred HHHcCC
Confidence 666653
No 194
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=20.63 E-value=1.1e+03 Score=28.09 Aligned_cols=149 Identities=9% Similarity=0.110 Sum_probs=91.7
Q ss_pred HHHHHHHHhcC------CHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhh--ccCCHHHHHHHHHHHHHhhcCCC
Q 000124 86 MPLFISILRSG------TPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLL--KSESTDTRKAAAEALYEVSSGGL 157 (2138)
Q Consensus 86 Vp~LV~LLks~------~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL--~sed~eVr~aAa~AL~nLS~~~~ 157 (2138)
+..+..+++++ +.+....++..|-.++.+-..-.++...+ ...|-.++ ...++.+++.|++++..--++
T Consensus 24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRN-- 100 (315)
T 3qml_C 24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRN-- 100 (315)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHcc--
Confidence 44445555555 23345667778888888877777776532 33333433 335778899999999887763
Q ss_pred CCChhhHHHHHHc--CcHHHHHHhh----CCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccC--C
Q 000124 158 SDDHVGMKIFVTE--GVVPTLWDQL----NPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSD--N 229 (2138)
Q Consensus 158 nkd~~gre~Ivea--G~Ip~Ll~LL----~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~--s 229 (2138)
.+...+.+.+. ..+..+..-| ..++.....+...-+++|-.|...+... ...|+..|..++... .
T Consensus 101 --NP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F-----~~~~m~~L~~ly~~~~~d 173 (315)
T 3qml_C 101 --NPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDL-----PIYSTVVLQNVYERNNKD 173 (315)
T ss_dssp --CHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTTTC
T ss_pred --CHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhh-----hhccHHHHHHHHccCCCC
Confidence 34444444332 3333333332 2222223456777788888888875321 145888888888877 7
Q ss_pred HHHHHHHHHHHHHHH
Q 000124 230 AAAQSNAASLLARLM 244 (2138)
Q Consensus 230 ~evq~~A~~aL~nLs 244 (2138)
+.++..++.++..+.
T Consensus 174 ~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 174 KQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 889998888887766
No 195
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=20.55 E-value=86 Score=43.72 Aligned_cols=98 Identities=14% Similarity=0.142 Sum_probs=67.8
Q ss_pred hcCCceEEEEEecccccccccCCCCceEEEEecCC-----CCccccccccCCCCCcccccee--eecCCCCCCeEEEEEe
Q 000124 2006 HCLPGCLTVTIKRGNNLKQTMGTTNAFCRLTIGNG-----PPRQTKVVSHSISPEWKEGFTW--AFDVPPKGQKLHIICK 2078 (2138)
Q Consensus 2006 ~~~~g~l~v~v~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~t~~~~~~~~p~w~~~f~~--~~~~~p~~~~l~~~~~ 2078 (2138)
-.+..-+.|+|..+.|+-.. .+.+=||...+=-| ++++|+-+.-+-+|.|||.++| -+-+=|.+-+|.|.+|
T Consensus 349 ~~~~~~f~i~i~~~~~~~~~-~~~~~~V~~~l~~g~~~L~~~~~T~~~~~~~~~~Wnewl~f~i~~~dLPr~a~L~~ti~ 427 (1092)
T 2y3a_A 349 WDNNNPFQITLVKGNKLNTE-ETVKVHVRAGLFHGTELLCKTVVSSEISGKNDHIWNEQLEFDINICDLPRMARLCFAVY 427 (1092)
T ss_dssp CCCCSEEEEEECCCCCCCCC-SSCCCCCBCCEEETTEESSCCCBCCCCCSSSCCCCCEEEEEEEESSSCCTTCEEEEECC
T ss_pred hhcCCCEEEEEEEeccCCCC-CCceEEEEEEEEECCEEccCceecccccCCCCCccceeEEeCCccccCChhcEEEEEEE
Confidence 35567899999999998544 55667766443233 4556888777889999997666 4567789999999999
Q ss_pred ecC-----C----------------C-C-CcccceEEEEecc---eeeccee
Q 000124 2079 SKN-----T----------------F-G-KSTLGKVTIQIDK---VVTEGVY 2104 (2138)
Q Consensus 2079 ~~~-----~----------------~-~-k~~~g~~~~~~~~---v~~~~~~ 2104 (2138)
+.. . . + ..-+|.++++|-| ....|++
T Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~~~l~~G~~ 479 (1092)
T 2y3a_A 428 AVLDKVKTKKSTKTINPSKYQTIRKAGKVHYPVAWVNTMVFDFKGQLRSGDV 479 (1092)
T ss_dssp CC------------------------------CCEEEEESBCTTCBBCCEEE
T ss_pred EecCccccccccccccccccccccccccccceeEEEeeeeECCcCcccCCCe
Confidence 852 1 0 1 1378999999866 4555554
Done!