BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000127
(2127 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E6R|A Chain A, Solution Structure Of The Phd Domain In Smcy Protein
Length = 92
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 33/56 (58%)
Query: 1153 DEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSGNCKN 1208
D +C+VC +DD +L CD CD YH +CL PPL +P G W CP C+ CK
Sbjct: 15 DSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAECKQ 70
>pdb|3ZVZ|B Chain B, Phd Finger Of Human Uhrf1
Length = 57
Score = 63.9 bits (154), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/46 (54%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 1157 CKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVP-EGNWYCPPC 1201
C +CG +D D L+CD CD +H YCL PPL+ VP E WYCP C
Sbjct: 8 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 53
>pdb|1F62|A Chain A, Wstf-Phd
Length = 51
Score = 62.0 bits (149), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/45 (48%), Positives = 29/45 (64%)
Query: 1157 CKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPC 1201
CKVC +DD ++LCD C+ +H +CL P L VP+G W CP C
Sbjct: 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPAC 47
>pdb|1MM2|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b
pdb|2L75|A Chain A, Solution Structure Of Chd4-Phd2 In Complex With H3k9me3
Length = 61
Score = 62.0 bits (149), Expect = 4e-09, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 1157 CKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSGNCKNK 1209
C+VC KD +L CDTC S YH +CL PPL +P G W CP C K K
Sbjct: 12 CRVC---KDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALKGK 61
>pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|B Chain B, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|C Chain C, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|D Chain D, Structure Of Uhrf1 In Complex With Histone Tail
Length = 226
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 1157 CKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVP-EGNWYCPPC 1201
C +CG +D D L+CD CD +H YCL PPL+ VP E WYCP C
Sbjct: 177 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 222
>pdb|4GY5|A Chain A, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|B Chain B, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|C Chain C, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|D Chain D, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
Length = 241
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 1157 CKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVP-EGNWYCPPC 1201
C +CG +D D L+CD CD +H YCL PPL+ VP E WYCP C
Sbjct: 193 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 238
>pdb|2KWJ|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3 Bound To A Histone Peptide
Containing Acetylation At Lysine 14
pdb|2KWK|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3b Bound To A H3 Peptide Wild
Type
pdb|2KWN|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
Fingers Of Human Transcriptional Protein Dpf3b Bound To A
Histone H4 Peptide Containing Acetylation At Lysine 16
pdb|2KWO|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
Fingers Of Human Transcriptional Protein Dpf3b Bound To A
Histone H4 Peptide Containing N-Terminal Acetylation At
Serine 1
Length = 114
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 30/45 (66%)
Query: 1157 CKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPC 1201
C +CG ++DD +L CD CD GYH YCL PP+ PEG+W C C
Sbjct: 61 CILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLC 105
>pdb|2YSM|A Chain A, Solution Structure Of The First And Second Phd Domain From
MyeloidLYMPHOID OR MIXED-Lineage Leukemia Protein 3
Homolog
Length = 111
Score = 59.7 bits (143), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 1143 SASEIPKAPWDEGVCKVCGIDK---DDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCP 1199
+ + + +A W CKVC K +D +L+CDTCD GYHT+CL P + VP W C
Sbjct: 40 AVTPLKRAGWQCPECKVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCK 99
Query: 1200 PC 1201
C
Sbjct: 100 NC 101
Score = 40.4 bits (93), Expect = 0.011, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 1157 CKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPC-LSGNCK 1207
C VC D + C TC YH CL +T + W CP C + NCK
Sbjct: 10 CAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKVCQNCK 61
>pdb|1MM3|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b With C-
Terminal Loop Replaced By Corresponding Loop From Wstf
Length = 61
Score = 59.3 bits (142), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 1157 CKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSGNCKNK 1209
C+VC KD +L CDTC S YH +CL P L VP+G W CP C K K
Sbjct: 12 CRVC---KDGGELLCCDTCPSSYHIHCLRPALYEVPDGEWQCPRCTCPALKGK 61
>pdb|3ZVY|A Chain A, Phd Finger Of Human Uhrf1 In Complex With Unmodified Histone
H3 N-Terminal Tail
pdb|3ZVY|B Chain B, Phd Finger Of Human Uhrf1 In Complex With Unmodified Histone
H3 N-Terminal Tail
Length = 72
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 1156 VCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVP-EGNWYCPPC 1201
C +CG +D D L+CD CD +H YCL PPL+ VP E WYCP C
Sbjct: 22 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 68
>pdb|3T6R|A Chain A, Structure Of Uhrf1 In Complex With Unmodified H3 N-Terminal
Tail
pdb|3T6R|B Chain B, Structure Of Uhrf1 In Complex With Unmodified H3 N-Terminal
Tail
Length = 72
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 1156 VCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVP-EGNWYCPPC 1201
C +CG +D D L+CD CD +H YCL PPL+ VP E WYCP C
Sbjct: 25 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 71
>pdb|3SHB|A Chain A, Crystal Structure Of Phd Domain Of Uhrf1
Length = 77
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 1156 VCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVP-EGNWYCPPC 1201
C +CG +D D L+CD CD +H YCL PPL+ VP E WYCP C
Sbjct: 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 74
>pdb|3SOU|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone H3 1-9
Peptide
pdb|3SOU|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone H3 1-9
Peptide
pdb|3SOW|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone
H3k4me3 1-9 Peptide
pdb|3SOW|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone
H3k4me3 1-9 Peptide
pdb|3SOX|A Chain A, Structure Of Uhrf1 Phd Finger In The Free Form
pdb|3SOX|B Chain B, Structure Of Uhrf1 Phd Finger In The Free Form
pdb|3ASL|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
Length = 70
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 1156 VCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVP-EGNWYCPPC 1201
C +CG +D D L+CD CD +H YCL PPL+ VP E WYCP C
Sbjct: 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 66
>pdb|2LGG|A Chain A, Structure Of Phd Domain Of Uhrf1 In Complex With H3 Peptide
pdb|2LGK|A Chain A, Nmr Structure Of Uhrf1 Phd Domains In A Complex With Histone
H3 Peptide
pdb|2LGL|A Chain A, Nmr Structure Of The Uhrf1 Phd Domain
Length = 69
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 1156 VCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVP-EGNWYCPPC 1201
C +CG +D D L+CD CD +H YCL PPL+ VP E WYCP C
Sbjct: 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 66
>pdb|3V43|A Chain A, Crystal Structure Of Moz
Length = 112
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 1152 WDEGVCKVCGIDKDD----DNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYC 1198
W CK C +D DN+L CD+CD G+H C PPLTR+P+G W C
Sbjct: 56 WQCIECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWIC 106
>pdb|2LN0|A Chain A, Structure Of Moz
Length = 110
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 1152 WDEGVCKVCGIDKDD----DNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYC 1198
W CK C +D DN+L CD+CD G+H C PPLTR+P+G W C
Sbjct: 54 WQCIECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWIC 104
>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger
pdb|2PUY|B Chain B, Crystal Structure Of The Bhc80 Phd Finger
Length = 60
Score = 54.7 bits (130), Expect = 5e-07, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 1154 EGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPC 1201
E C VC + +L+CDTC YH CL PPL +P+G W CP C
Sbjct: 5 EDFCSVC---RKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRC 49
>pdb|2E6S|A Chain A, Solution Structure Of The Phd Domain In Ring Finger Protein
107
Length = 77
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 1157 CKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGN-WYCPPC 1201
C+VCG + + LLCD C+ YH YCL PPL +VPE WYCP C
Sbjct: 29 CRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSC 74
>pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4 (Mi2b)
Length = 61
Score = 53.1 bits (126), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 1157 CKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPC 1201
C+VC + ++LCDTC YH CL P + + PEG W CP C
Sbjct: 14 CEVC---QQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHC 55
>pdb|1XWH|A Chain A, Nmr Structure Of The First Phd Finger Of Autoimmune
Regulator Protein (Aire1): Insights Into Apeced
pdb|2KE1|A Chain A, Molecular Basis Of Non-Modified Histone H3 Tail Recognition
By The First Phd Finger Of Autoimmune Regulator
Length = 66
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 1160 CGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSGN 1205
C + +D ++ CD C +H CL+PPL +P G W C CL
Sbjct: 11 CAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQAT 56
>pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger Protein
21a
Length = 56
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 1154 EGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPC 1201
E C VC + +L+CDTC YH CL PPL +P+G W CP C
Sbjct: 9 EDFCSVC---RKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRC 53
>pdb|2KFT|A Chain A, Nmr Solution Structure Of The First Phd Finger Domain Of
Human Autoimmune Regulator (Aire) In Complex With Histone
H3(1-20cys) Peptide
Length = 56
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 1160 CGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCL 1202
C + +D ++ CD C +H CL+PPL +P G W C CL
Sbjct: 8 CAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCL 50
>pdb|2KU3|A Chain A, Solution Structure Of Brd1 Phd1 Finger
Length = 71
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 1153 DEGVCKVC--GIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSGNCK 1207
++ VC +C G ++ + +L CD C+ H C P +PEG W C CL +
Sbjct: 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQSRAR 69
>pdb|2L43|A Chain A, Structural Basis For Histone Code Recognition By Brpf2-Phd1
Finger
Length = 88
Score = 39.3 bits (90), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 1153 DEGVCKVC--GIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCL 1202
++ VC +C G ++ + +L CD C+ H C P +PEG W C CL
Sbjct: 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCL 73
>pdb|2K16|A Chain A, Solution Structure Of The Free Taf3 Phd Domain
pdb|2K17|A Chain A, Solution Structure Of The Taf3 Phd Domain In Complex With A
H3k4me3 Peptide
Length = 75
Score = 37.7 bits (86), Expect = 0.077, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 24/54 (44%)
Query: 1156 VCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSGNCKNK 1209
+C C D ++ CD CD YH C+ E W+CP C + K+K
Sbjct: 20 ICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKDK 73
>pdb|3G0L|A Chain A, Crystal Structure Of Human Bromodomain Adjacent To Zinc
Finger Domain 2b (Baz2b)
pdb|3Q2F|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With A Triazolo Ligand
pdb|4IR3|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
[7-amino-1-(pyrimidin-2-yl)indolizin-3-yl]ethanone
(gsk2833282a)
pdb|4IR4|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
[7-(morpholin-4-yl)-1-(pyridin-2-yl)indolizin-3-
yl]ethanone (gsk2834113a)
pdb|4IR5|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
{1-[2-(hydroxymethyl)phenyl]-7-phenoxyindolizin-3-
yl}ethanone (gsk2847449a)
pdb|4IR6|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
{1-[2-(methylsulfonyl)phenyl]-7-phenoxyindolizin-3-
yl}ethanone (gsk2838097a)
Length = 117
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 1043 GFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICTAYSDQSDLLQLAGKLC 1102
G+ ++ +P+DF TI +L+ G Y + E F DVR V+ + T D SD+ + +
Sbjct: 45 GYKKVIKKPMDFSTIREKLSSGQY-PNLETFALDVRLVFDNCETFNEDDSDIGRAGHNMR 103
Query: 1103 QNFE 1106
+ FE
Sbjct: 104 KYFE 107
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|B Chain B, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|C Chain C, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|D Chain D, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|E Chain E, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|F Chain F, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|G Chain G, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|H Chain H, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|I Chain I, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|J Chain J, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|K Chain K, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|L Chain L, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5N|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5N|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5O|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5P|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
Length = 207
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 1160 CGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPC 1201
C + ++ ++L C+ C +H C P L P G+W C C
Sbjct: 10 CAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFC 51
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
Length = 184
Score = 36.2 bits (82), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 1160 CGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPC 1201
C + ++ +L C+ C +H C P LT P G W C C
Sbjct: 7 CAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFC 48
>pdb|2E7O|A Chain A, Solution Structure Of The Bromodomain From Human Bromodomain
Adjacent To Zinc Finger Domain 2b
Length = 112
Score = 35.0 bits (79), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 1043 GFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICTAYSDQSDLLQLAGKLC 1102
G+ ++ +P+DF TI +L+ G Y + E F DVR V+ + T D SD+ + +
Sbjct: 42 GYKKVIKKPMDFSTIREKLSSGQY-PNLETFALDVRLVFDNCETFNEDDSDIGRAGHNMR 100
Query: 1103 QNFE 1106
+ FE
Sbjct: 101 KYFE 104
>pdb|2WZO|A Chain A, The Structure Of The Fyr Domain
Length = 146
Score = 35.0 bits (79), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 12/63 (19%)
Query: 294 LPVEFEDFCLLAVGEV-DPRPSYHNSSQIWPVGYKSSWHDKVTGS--------LFVCDVS 344
P+ + ++GE+ RP +H+ S I+PVGY S+ ++ S L+ C +
Sbjct: 5 FPIGLGGLTVYSLGEIITDRPGFHDESAIYPVGYCST---RIYASMKCPDQKCLYTCQIK 61
Query: 345 DGG 347
DGG
Sbjct: 62 DGG 64
>pdb|2RO1|A Chain A, Nmr Solution Structures Of Human Kap1 Phd Finger-Bromodomain
Length = 189
Score = 33.9 bits (76), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 1156 VCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPC 1201
+C+VC + ++++C+ C+ +H C P L VP W C C
Sbjct: 4 ICRVC---QKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLC 46
>pdb|2YT5|A Chain A, Solution Structure Of The Phd Domain Of Metal-Response
Element-Binding Transcription Factor 2
Length = 66
Score = 32.0 bits (71), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 1155 GVCKVCGIDKDD--DNVLLCDTCDSGYHTYCLTPPLTRV---PEGNWYCPPCL 1202
GVC +C + + + +++CD C GYH C TP + + W C C+
Sbjct: 7 GVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCV 59
>pdb|4GND|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
pdb|4GND|C Chain C, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
pdb|4GNE|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3 Peptide 1-7
pdb|4GNF|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3 Peptide 1-15
pdb|4GNG|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3k9me3 Peptide
pdb|4GNG|D Chain D, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3k9me3 Peptide
Length = 107
Score = 31.2 bits (69), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Query: 1154 EGVCKVCGIDKDDDNVLLCDT--CDSGYHTYCLTPPLTRVPEGNWYCP 1199
E C CG D +++CD C YH CL LT+ P G W CP
Sbjct: 15 EDYCFQCG---DGGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECP 57
>pdb|3S4W|B Chain B, Structure Of The Fanci-Fancd2 Complex
Length = 1323
Score = 31.2 bits (69), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 1632 KELAESILRWTKIGY-KDLKIAGNHIEDESVPSSSKRRKSEATVKSSGLVTKALTVLEE- 1689
K+L+ ++ ++ IG + +AG ED SVPS+S +R + + + VT L ++
Sbjct: 527 KQLSSTVFKYKLIGIIGAVTMAGIMAEDRSVPSNSSQRSANVSSEQRTQVTSLLQLVHSC 586
Query: 1690 -KHGP 1693
+H P
Sbjct: 587 TEHSP 591
>pdb|1FP0|A Chain A, Solution Structure Of The Phd Domain From The Kap-1
Corepressor
Length = 88
Score = 30.8 bits (68), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 1156 VCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPC 1201
+C+VC D +++C+ C+ +H C P L VP W C C
Sbjct: 27 ICRVCQKPGD---LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLC 69
>pdb|3LNN|A Chain A, Crystal Structure Of Zneb From Cupriavidus Metallidurans
pdb|3LNN|B Chain B, Crystal Structure Of Zneb From Cupriavidus Metallidurans
Length = 359
Score = 30.8 bits (68), Expect = 8.6, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 1048 VSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICTAYSDQSDL 1094
V P++ R +DL A GAY A L V ++ H TA + + DL
Sbjct: 173 VRSPINGRVVDLNAATGAYWNDTTASLMTVADLSHVFVTANAQEKDL 219
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,070,939
Number of Sequences: 62578
Number of extensions: 2531191
Number of successful extensions: 5464
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 5417
Number of HSP's gapped (non-prelim): 47
length of query: 2127
length of database: 14,973,337
effective HSP length: 114
effective length of query: 2013
effective length of database: 7,839,445
effective search space: 15780802785
effective search space used: 15780802785
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)