Query 000127
Match_columns 2127
No_of_seqs 379 out of 1170
Neff 3.4
Searched_HMMs 46136
Date Thu Mar 28 19:38:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000127.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000127hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1474 Transcription initiati 99.7 7.4E-18 1.6E-22 210.8 7.8 109 1000-1117 221-329 (640)
2 cd05495 Bromo_cbp_like Bromodo 99.5 1.1E-13 2.3E-18 139.9 9.0 103 1000-1111 2-105 (108)
3 cd05506 Bromo_plant1 Bromodoma 99.5 9.6E-14 2.1E-18 136.9 7.1 99 1002-1109 1-99 (99)
4 cd05496 Bromo_WDR9_II Bromodom 99.5 1.5E-13 3.2E-18 141.3 8.7 104 1002-1116 6-110 (119)
5 cd05503 Bromo_BAZ2A_B_like Bro 99.4 3.4E-13 7.3E-18 133.5 7.7 96 1003-1109 2-97 (97)
6 cd05497 Bromo_Brdt_I_like Brom 99.4 4.6E-13 1E-17 135.2 7.7 102 1000-1111 4-106 (107)
7 cd05498 Bromo_Brdt_II_like Bro 99.4 6.1E-13 1.3E-17 132.0 7.7 98 1003-1109 2-102 (102)
8 cd05505 Bromo_WSTF_like Bromod 99.4 6.2E-13 1.3E-17 132.3 7.5 94 1003-1107 2-95 (97)
9 cd05502 Bromo_tif1_like Bromod 99.4 1.5E-12 3.3E-17 131.2 9.3 101 1001-1113 4-107 (109)
10 cd05500 Bromo_BDF1_2_I Bromodo 99.4 1.3E-12 2.8E-17 130.5 8.7 98 1001-1107 4-101 (103)
11 cd05499 Bromo_BDF1_2_II Bromod 99.4 1.4E-12 3E-17 129.8 7.8 98 1003-1109 2-102 (102)
12 cd05504 Bromo_Acf1_like Bromod 99.3 1.6E-12 3.4E-17 132.9 8.1 102 1001-1113 12-113 (115)
13 cd05501 Bromo_SP100C_like Brom 99.3 2.6E-12 5.7E-17 129.5 8.4 96 1003-1112 4-99 (102)
14 cd05507 Bromo_brd8_like Bromod 99.3 3.3E-12 7.2E-17 128.2 8.4 98 1001-1109 3-100 (104)
15 cd05509 Bromo_gcn5_like Bromod 99.3 4.3E-12 9.4E-17 125.8 8.3 99 1002-1111 2-100 (101)
16 cd05516 Bromo_SNF2L2 Bromodoma 99.3 9.5E-12 2.1E-16 125.6 8.5 99 1002-1111 2-106 (107)
17 cd05510 Bromo_SPT7_like Bromod 99.2 1.4E-11 3.1E-16 125.6 8.1 101 1000-1111 6-108 (112)
18 PF05964 FYRN: F/Y-rich N-term 99.2 5.9E-12 1.3E-16 113.9 3.4 48 298-345 1-54 (54)
19 cd05508 Bromo_RACK7 Bromodomai 99.2 3.2E-11 7E-16 120.7 8.0 95 1001-1107 3-97 (99)
20 cd05513 Bromo_brd7_like Bromod 99.2 2.5E-11 5.5E-16 121.3 7.1 91 1002-1103 2-92 (98)
21 cd05528 Bromo_AAA Bromodomain; 99.2 7.4E-11 1.6E-15 120.4 8.2 100 1003-1113 5-108 (112)
22 cd05512 Bromo_brd1_like Bromod 99.1 7.1E-11 1.5E-15 117.9 6.8 89 1004-1103 4-92 (98)
23 cd05519 Bromo_SNF2 Bromodomain 99.1 2.6E-10 5.5E-15 114.2 7.9 96 1003-1109 2-103 (103)
24 cd05511 Bromo_TFIID Bromodomai 99.1 2.5E-10 5.5E-15 116.3 7.9 96 1007-1113 6-101 (112)
25 cd05524 Bromo_polybromo_I Brom 99.1 4E-10 8.8E-15 115.1 8.8 100 1003-1113 4-109 (113)
26 cd05515 Bromo_polybromo_V Brom 99.1 3.5E-10 7.5E-15 114.0 8.2 96 1003-1109 2-103 (105)
27 cd05529 Bromo_WDR9_I_like Brom 99.0 5.4E-10 1.2E-14 116.4 8.9 100 999-1108 22-124 (128)
28 smart00297 BROMO bromo domain. 99.0 5.8E-10 1.3E-14 110.0 8.3 101 1000-1111 6-106 (107)
29 PF00439 Bromodomain: Bromodom 99.0 6E-10 1.3E-14 105.6 7.2 84 1006-1100 1-84 (84)
30 cd04369 Bromodomain Bromodomai 99.0 7.2E-10 1.6E-14 105.2 7.5 95 1003-1108 2-98 (99)
31 cd05525 Bromo_ASH1 Bromodomain 99.0 1.6E-09 3.4E-14 109.9 8.7 95 1002-1107 3-103 (106)
32 cd05517 Bromo_polybromo_II Bro 98.9 2.3E-09 5E-14 108.1 8.0 98 1004-1106 3-100 (103)
33 cd05518 Bromo_polybromo_IV Bro 98.9 2.6E-09 5.6E-14 107.8 7.8 98 1004-1106 3-100 (103)
34 KOG1244 Predicted transcriptio 98.9 4.7E-10 1E-14 127.1 1.5 69 1136-1204 260-331 (336)
35 cd05520 Bromo_polybromo_III Br 98.8 5.4E-09 1.2E-13 105.4 7.3 79 1018-1107 23-101 (103)
36 cd05521 Bromo_Rsc1_2_I Bromodo 98.7 2.8E-08 6E-13 101.0 7.2 99 1002-1107 2-100 (106)
37 cd05492 Bromo_ZMYND11 Bromodom 98.7 2.4E-08 5.2E-13 102.2 6.7 83 1017-1105 17-99 (109)
38 cd05522 Bromo_Rsc1_2_II Bromod 98.7 4.5E-08 9.7E-13 98.9 8.3 94 1003-1107 6-102 (104)
39 KOG0825 PHD Zn-finger protein 98.6 1.7E-08 3.8E-13 125.2 1.8 50 1155-1204 216-266 (1134)
40 KOG1245 Chromatin remodeling c 98.5 8.5E-08 1.8E-12 129.0 5.6 93 1006-1110 1306-1398(1404)
41 PF00628 PHD: PHD-finger; Int 98.4 1E-07 2.2E-12 84.0 1.1 48 1156-1203 1-50 (51)
42 KOG4299 PHD Zn-finger protein 98.4 1.2E-07 2.6E-12 117.4 1.6 51 1154-1204 253-305 (613)
43 KOG1512 PHD Zn-finger protein 98.3 2.4E-07 5.1E-12 106.1 1.3 59 1144-1204 301-363 (381)
44 smart00541 FYRN "FY-rich" doma 98.3 5.7E-07 1.2E-11 79.4 3.1 37 309-345 3-44 (44)
45 KOG1246 DNA-binding protein ju 98.1 5.1E-07 1.1E-11 118.6 0.1 166 1155-1324 156-330 (904)
46 cd04718 BAH_plant_2 BAH, or Br 98.1 2.7E-06 5.9E-11 91.3 4.3 31 1178-1208 1-31 (148)
47 COG5076 Transcription factor i 98.1 8.2E-06 1.8E-10 97.9 8.3 109 1002-1121 143-257 (371)
48 smart00249 PHD PHD zinc finger 98.0 3.4E-06 7.4E-11 71.0 3.5 46 1156-1201 1-47 (47)
49 PF02791 DDT: DDT domain; Int 97.8 2.8E-05 6.1E-10 72.3 5.9 58 658-760 2-59 (61)
50 cd05526 Bromo_polybromo_VI Bro 97.8 6.3E-05 1.4E-09 77.9 8.2 104 1003-1113 5-108 (110)
51 KOG4443 Putative transcription 97.7 1.4E-05 3E-10 100.0 2.3 56 1152-1207 63-122 (694)
52 KOG1245 Chromatin remodeling c 97.7 6.7E-06 1.4E-10 111.4 -0.7 51 1155-1205 1109-1159(1404)
53 smart00571 DDT domain in diffe 97.6 0.0001 2.3E-09 69.2 6.0 37 657-694 1-39 (63)
54 KOG1973 Chromatin remodeling p 97.6 3.2E-05 6.9E-10 90.2 2.6 47 1155-1205 220-269 (274)
55 KOG0957 PHD finger protein [Ge 97.4 4.3E-05 9.3E-10 92.9 0.7 48 1155-1202 545-596 (707)
56 KOG1473 Nucleosome remodeling 97.4 0.00014 3E-09 94.8 5.0 101 1154-1265 344-457 (1414)
57 cd05494 Bromodomain_1 Bromodom 97.4 8.4E-05 1.8E-09 77.0 2.4 78 1003-1088 5-88 (114)
58 KOG0383 Predicted helicase [Ge 97.4 6.1E-05 1.3E-09 96.4 1.5 49 1155-1206 48-96 (696)
59 PF15614 WHIM3: WSTF, HB1, Itc 97.4 0.00017 3.8E-09 64.7 3.8 37 1608-1644 1-38 (46)
60 KOG0954 PHD finger protein [Ge 96.9 0.00096 2.1E-08 84.7 5.0 50 1153-1204 270-321 (893)
61 KOG0955 PHD finger protein BR1 96.8 0.00064 1.4E-08 90.4 2.8 50 1153-1204 218-269 (1051)
62 KOG1472 Histone acetyltransfer 96.7 0.0009 2E-08 86.1 3.2 76 1007-1093 612-687 (720)
63 PF01429 MBD: Methyl-CpG bindi 96.6 0.0009 2E-08 65.1 1.7 41 159-199 12-58 (77)
64 PF05965 FYRC: F/Y rich C-term 96.6 0.0013 2.7E-08 64.7 2.6 74 459-591 11-84 (86)
65 cd05491 Bromo_TBP7_like Bromod 96.6 0.0017 3.7E-08 68.3 3.4 42 1049-1091 62-103 (119)
66 smart00542 FYRC "FY-rich" doma 96.5 0.0033 7.1E-08 62.6 5.0 73 463-594 11-83 (86)
67 COG5034 TNG2 Chromatin remodel 96.5 0.0012 2.6E-08 76.3 1.7 44 1156-1203 223-269 (271)
68 KOG4323 Polycomb-like PHD Zn-f 96.3 0.0021 4.5E-08 79.6 2.9 50 1156-1205 170-225 (464)
69 COG5141 PHD zinc finger-contai 96.0 0.0029 6.2E-08 77.8 1.7 50 1153-1204 192-243 (669)
70 KOG0956 PHD finger protein AF1 95.8 0.004 8.7E-08 78.9 1.7 47 1156-1204 7-57 (900)
71 PF15613 WHIM2: WSTF, HB1, Itc 95.6 0.0097 2.1E-07 52.0 2.9 17 1544-1560 1-17 (38)
72 KOG1473 Nucleosome remodeling 95.4 0.056 1.2E-06 72.0 9.9 110 644-818 173-285 (1414)
73 cd00122 MBD MeCP2, MBD1, MBD2, 95.3 0.0064 1.4E-07 57.1 1.0 40 159-198 7-51 (62)
74 cd01396 MeCP2_MBD MeCP2, MBD1, 95.3 0.0063 1.4E-07 59.8 0.9 39 159-197 8-51 (77)
75 KOG0955 PHD finger protein BR1 93.7 0.073 1.6E-06 71.9 5.3 99 1002-1111 566-664 (1051)
76 smart00391 MBD Methyl-CpG bind 93.7 0.026 5.6E-07 55.6 0.9 40 159-198 9-54 (77)
77 PF13831 PHD_2: PHD-finger; PD 93.1 0.022 4.7E-07 49.0 -0.5 34 1167-1202 2-36 (36)
78 KOG1474 Transcription initiati 91.5 0.057 1.2E-06 70.1 0.2 85 1013-1106 4-88 (640)
79 PF15612 WHIM1: WSTF, HB1, Itc 91.4 0.18 3.9E-06 45.3 3.2 44 1241-1284 5-48 (50)
80 KOG0008 Transcription initiati 86.5 0.71 1.5E-05 63.4 4.7 91 1007-1108 1267-1358(1563)
81 KOG0008 Transcription initiati 85.3 0.68 1.5E-05 63.5 3.7 71 1011-1092 1392-1462(1563)
82 cd01397 HAT_MBD Methyl-CpG bin 85.2 0.36 7.9E-06 47.7 0.9 38 159-196 7-49 (73)
83 KOG0957 PHD finger protein [Ge 82.9 0.88 1.9E-05 57.2 3.0 51 1154-1204 119-179 (707)
84 KOG4443 Putative transcription 82.8 0.5 1.1E-05 61.1 0.9 52 1154-1205 18-72 (694)
85 KOG1827 Chromatin remodeling c 80.6 1.9 4E-05 56.4 4.8 69 1040-1109 87-155 (629)
86 KOG1512 PHD Zn-finger protein 80.5 0.71 1.5E-05 54.9 1.1 92 1155-1257 259-360 (381)
87 KOG1472 Histone acetyltransfer 78.8 1.4 3.1E-05 58.2 3.0 75 1000-1092 292-366 (720)
88 PF15446 zf-PHD-like: PHD/FYVE 74.5 1.5 3.3E-05 49.3 1.5 49 1156-1204 1-60 (175)
89 PF14446 Prok-RING_1: Prokaryo 61.5 4.6 9.9E-05 38.4 1.5 32 1155-1186 6-38 (54)
90 PF13901 DUF4206: Domain of un 59.4 6.9 0.00015 44.9 2.7 40 1156-1204 154-198 (202)
91 KOG1828 IRF-2-binding protein 58.4 4.1 8.9E-05 50.7 0.8 99 1007-1116 25-123 (418)
92 KOG4299 PHD Zn-finger protein 57.9 5.9 0.00013 51.7 2.1 47 1155-1204 48-95 (613)
93 KOG0386 Chromatin remodeling c 53.9 9 0.00019 52.4 2.8 105 1004-1113 1027-1131(1157)
94 PF11793 FANCL_C: FANCL C-term 53.3 1.6 3.4E-05 42.5 -3.0 50 1155-1204 3-64 (70)
95 KOG0383 Predicted helicase [Ge 51.4 2.9 6.2E-05 55.5 -2.1 49 1153-1204 505-554 (696)
96 cd01395 HMT_MBD Methyl-CpG bin 51.1 5.2 0.00011 38.7 0.1 30 171-200 23-52 (60)
97 KOG4161 Methyl-CpG binding tra 49.2 18 0.0004 43.5 4.2 40 159-198 20-65 (272)
98 PF12171 zf-C2H2_jaz: Zinc-fin 47.3 8.1 0.00018 31.0 0.6 24 1731-1754 1-24 (27)
99 PF12874 zf-met: Zinc-finger o 45.2 5.2 0.00011 31.1 -0.7 23 1732-1754 1-23 (25)
100 PF12861 zf-Apc11: Anaphase-pr 31.9 20 0.00043 37.0 0.8 43 1160-1204 38-80 (85)
101 PF04216 FdhE: Protein involve 30.0 26 0.00056 42.0 1.4 48 1148-1207 166-223 (290)
102 cd05493 Bromo_ALL-1 Bromodomai 28.8 49 0.0011 36.5 3.1 44 1051-1095 59-102 (131)
103 KOG1828 IRF-2-binding protein 28.6 40 0.00087 42.6 2.7 61 1041-1103 238-298 (418)
104 TIGR01562 FdhE formate dehydro 28.4 53 0.0011 40.5 3.6 42 1151-1204 181-233 (305)
105 PRK03564 formate dehydrogenase 28.3 45 0.00098 41.1 3.0 42 1151-1204 184-235 (309)
106 PF00301 Rubredoxin: Rubredoxi 27.0 32 0.00069 32.0 1.1 33 1171-1204 3-43 (47)
107 PF13639 zf-RING_2: Ring finge 26.9 5 0.00011 35.1 -3.8 43 1155-1202 1-44 (44)
108 KOG4628 Predicted E3 ubiquitin 26.8 47 0.001 41.6 2.9 50 1155-1207 230-279 (348)
109 PF13832 zf-HC5HC2H_2: PHD-zin 25.2 39 0.00084 34.8 1.5 29 1155-1185 56-86 (110)
110 COG1773 Rubredoxin [Energy pro 25.2 45 0.00098 32.2 1.8 40 1156-1204 5-45 (55)
111 PF07227 DUF1423: Protein of u 25.0 58 0.0013 41.9 3.2 29 1156-1184 130-161 (446)
112 KOG1734 Predicted RING-contain 25.0 25 0.00054 42.5 0.1 42 1144-1185 214-262 (328)
113 PF10497 zf-4CXXC_R1: Zinc-fin 24.7 31 0.00068 36.4 0.8 48 1155-1203 8-69 (105)
114 PF07649 C1_3: C1-like domain; 20.6 43 0.00092 27.9 0.6 29 1156-1184 2-30 (30)
115 cd02341 ZZ_ZZZ3 Zinc finger, Z 20.2 39 0.00085 31.4 0.4 21 1719-1739 1-23 (48)
116 KOG2756 Predicted Mg2+-depende 20.1 25 0.00054 42.7 -1.1 39 541-581 206-244 (349)
No 1
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=99.71 E-value=7.4e-18 Score=210.75 Aligned_cols=109 Identities=27% Similarity=0.389 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHH
Q 000127 1000 DVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVRE 1079 (2127)
Q Consensus 1000 dlImKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRL 1079 (2127)
-.+|++|..||+.|+.+.++|+|+.|||...|+ |++|+.||++|||||||+.||..|.|. +++.|++|||+
T Consensus 221 ~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~Lg--------LpDY~~IIK~PMDLgTIK~kL~~~~Y~-~~~eF~~DVRL 291 (640)
T KOG1474|consen 221 VELLKQCLSILKRLMKHKHAWPFNEPVDVVKLG--------LPDYHDIIKHPMDLGTIKKKLEKGEYK-SAEEFAADVRL 291 (640)
T ss_pred HHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcC--------CcchhhhcCCCccHHHHHhhhcccccC-CHHHHHHHHHH
Confidence 346999999999999999999999999996665 777999999999999999999999999 67779999999
Q ss_pred HHHhhhhhcCCCchHHHHHHHhhchhhhhhHHhhhhhh
Q 000127 1080 VWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVLTLV 1117 (2127)
Q Consensus 1080 VWsN~~tyNgdgSEVveLAekLSQiFESrYkKqVLr~v 1117 (2127)
||.||++||+.+++|+.||..|...|+.+|..+.+.+.
T Consensus 292 ~F~Ncm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~ 329 (640)
T KOG1474|consen 292 TFDNCMTYNPEGSDVYAMAKKLQEVFEERWASMPLEIE 329 (640)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhcccccc
Confidence 99999999999999999999999999999998776554
No 2
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.47 E-value=1.1e-13 Score=139.86 Aligned_cols=103 Identities=19% Similarity=0.262 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHhc-chhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHH
Q 000127 1000 DVIMKQCRKVLRCAAAA-DEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVR 1078 (2127)
Q Consensus 1000 dlImKrCr~VLkeLl~s-d~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVR 1078 (2127)
+.+.++|..++..|+.+ ..+++|..||++.. .++++|..+|++||||+||+.|+..|.|. +...|.+|++
T Consensus 2 ~~l~~~~~~il~~l~~~~~~s~~F~~PV~~~~--------~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~-s~~ef~~D~~ 72 (108)
T cd05495 2 EELRQALMPTLEKLYKQDPESLPFRQPVDPKL--------LGIPDYFDIVKNPMDLSTIRRKLDTGQYQ-DPWQYVDDVW 72 (108)
T ss_pred HHHHHHHHHHHHHHHHcCcccchhcCCCCccc--------cCCCcHHHHhCCCCCHHHHHHHHhcCCCC-CHHHHHHHHH
Confidence 56789999999999988 99999999998843 45889999999999999999999999999 6788999999
Q ss_pred HHHHhhhhhcCCCchHHHHHHHhhchhhhhhHH
Q 000127 1079 EVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKK 1111 (2127)
Q Consensus 1079 LVWsN~~tyNgdgSEVveLAekLSQiFESrYkK 1111 (2127)
++|.||..||+.++.+..+|..|...|+..+..
T Consensus 73 li~~Na~~yN~~~s~i~~~a~~l~~~F~~~~~~ 105 (108)
T cd05495 73 LMFDNAWLYNRKTSRVYKYCTKLAEVFEQEIDP 105 (108)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987654
No 3
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.45 E-value=9.6e-14 Score=136.88 Aligned_cols=99 Identities=27% Similarity=0.417 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHHHH
Q 000127 1002 IMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVW 1081 (2127)
Q Consensus 1002 ImKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRLVW 1081 (2127)
+|++|+.||+.|+.++.+++|..||++. ..++++|..+|.+||||.||+.|+..+.|. +...|.+|++++|
T Consensus 1 ~~~~c~~il~~l~~~~~~~~F~~pv~~~--------~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~-s~~ef~~D~~li~ 71 (99)
T cd05506 1 VMKQCGTLLRKLMKHKWGWVFNAPVDVV--------ALGLPDYFDIIKKPMDLGTVKKKLEKGEYS-SPEEFAADVRLTF 71 (99)
T ss_pred CHHHHHHHHHHHHhCCCCccccCCCCcc--------ccCCCCHHHHHcCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHHH
Confidence 4899999999999999999999999763 245789999999999999999999999999 7888999999999
Q ss_pred HhhhhhcCCCchHHHHHHHhhchhhhhh
Q 000127 1082 HHICTAYSDQSDLLQLAGKLCQNFEVLY 1109 (2127)
Q Consensus 1082 sN~~tyNgdgSEVveLAekLSQiFESrY 1109 (2127)
.|+..||+.++.+..+|..|.+.|+..|
T Consensus 72 ~Na~~yn~~~s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 72 ANAMRYNPPGNDVHTMAKELLKIFETRW 99 (99)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999998764
No 4
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.45 E-value=1.5e-13 Score=141.34 Aligned_cols=104 Identities=19% Similarity=0.307 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHHHH
Q 000127 1002 IMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVW 1081 (2127)
Q Consensus 1002 ImKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRLVW 1081 (2127)
..++|..||..++.+..+++|..||++. ++++|+.+|++||||+||+.|+..|.|. +++.|..|+++||
T Consensus 6 w~~~c~~il~~l~~~~~s~~F~~PVd~~----------~~pdY~~iIk~PmDL~tIk~kL~~~~Y~-~~~ef~~D~~lif 74 (119)
T cd05496 6 WKKQCKELVNLMWDCEDSEPFRQPVDLL----------KYPDYRDIIDTPMDLGTVKETLFGGNYD-DPMEFAKDVRLIF 74 (119)
T ss_pred HHHHHHHHHHHHHhCCccccccCCCChh----------hcCcHHHHhCCcccHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Confidence 4789999999999999999999999872 4789999999999999999999999999 6788999999999
Q ss_pred HhhhhhcCC-CchHHHHHHHhhchhhhhhHHhhhhh
Q 000127 1082 HHICTAYSD-QSDLLQLAGKLCQNFEVLYKKEVLTL 1116 (2127)
Q Consensus 1082 sN~~tyNgd-gSEVveLAekLSQiFESrYkKqVLr~ 1116 (2127)
.||..||++ ++.|..+|..|...|+..+.+.+..+
T Consensus 75 ~Na~~yN~~~~s~i~~~a~~L~~~F~~~~~~l~~~~ 110 (119)
T cd05496 75 SNSKSYTPNKRSRIYSMTLRLSALFEEHIKKIISDW 110 (119)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999985 89999999999999999999887765
No 5
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.41 E-value=3.4e-13 Score=133.52 Aligned_cols=96 Identities=26% Similarity=0.438 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHHHHH
Q 000127 1003 MKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWH 1082 (2127)
Q Consensus 1003 mKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRLVWs 1082 (2127)
|..|+.||..|+.++.+++|..||+.. .+++|..+|++||||+||+.|+..|.|. +++.|.+|++++|.
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~----------~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~-s~~ef~~D~~li~~ 70 (97)
T cd05503 2 LALCETILDEMEAHEDAWPFLEPVNTK----------LVPGYRKIIKKPMDFSTIREKLESGQYK-TLEEFAEDVRLVFD 70 (97)
T ss_pred HHHHHHHHHHHHcCCCchhhcCCCCcc----------ccCCHHHHhCCCCCHHHHHHHHccCCCC-CHHHHHHHHHHHHH
Confidence 578999999999999999999999873 3689999999999999999999999998 78889999999999
Q ss_pred hhhhhcCCCchHHHHHHHhhchhhhhh
Q 000127 1083 HICTAYSDQSDLLQLAGKLCQNFEVLY 1109 (2127)
Q Consensus 1083 N~~tyNgdgSEVveLAekLSQiFESrY 1109 (2127)
||..||++++.+..+|..|...|+..|
T Consensus 71 Na~~yN~~~s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 71 NCETFNEDDSEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999998764
No 6
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.40 E-value=4.6e-13 Score=135.17 Aligned_cols=102 Identities=17% Similarity=0.202 Sum_probs=90.4
Q ss_pred HHHHHHH-HHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHH
Q 000127 1000 DVIMKQC-RKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVR 1078 (2127)
Q Consensus 1000 dlImKrC-r~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVR 1078 (2127)
.+ ++.| +.||+.|..+..+++|..||++ ...++++|..+|++||||+||+.|+..+.|. +...|.+|++
T Consensus 4 ~q-~~~~~~~il~~l~~~~~s~~F~~PVd~--------~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~-s~~ef~~D~~ 73 (107)
T cd05497 4 NQ-LQYLLKVVLKALWKHKFAWPFQQPVDA--------VKLNLPDYHKIIKTPMDLGTIKKRLENNYYW-SASECIQDFN 73 (107)
T ss_pred HH-HHHHHHHHHHHHHhCCcCccccCCCCc--------ccccCCcHHHHHcCcccHHHHHHHHcCCCCC-CHHHHHHHHH
Confidence 44 4555 5789999999999999999987 3345889999999999999999999999999 6778999999
Q ss_pred HHHHhhhhhcCCCchHHHHHHHhhchhhhhhHH
Q 000127 1079 EVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKK 1111 (2127)
Q Consensus 1079 LVWsN~~tyNgdgSEVveLAekLSQiFESrYkK 1111 (2127)
++|.||..||++++.+..+|..|...|+....+
T Consensus 74 li~~Na~~yN~~~s~i~~~A~~l~~~f~~~l~~ 106 (107)
T cd05497 74 TMFTNCYIYNKPGDDVVLMAQTLEKLFLQKLAQ 106 (107)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999888876553
No 7
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.39 E-value=6.1e-13 Score=132.03 Aligned_cols=98 Identities=21% Similarity=0.352 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHhc---chhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHH
Q 000127 1003 MKQCRKVLRCAAAA---DEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVRE 1079 (2127)
Q Consensus 1003 mKrCr~VLkeLl~s---d~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRL 1079 (2127)
+++|..||+.|+.+ ..+++|..||++ ...++++|..+|.+||||.+|+.|+..+.|. +.+.|..|+++
T Consensus 2 ~~~c~~il~~l~~~~~~~~a~~F~~pv~~--------~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~-s~~ef~~D~~l 72 (102)
T cd05498 2 LKFCSGILKELFSKKHKAYAWPFYKPVDP--------EALGLHDYHDIIKHPMDLSTIKKKLDNREYA-DAQEFAADVRL 72 (102)
T ss_pred hhHHHHHHHHHHhCCCccccCcccCcCCc--------cccCCCcHHHHccCCCcHHHHHHHHccCCCC-CHHHHHHHHHH
Confidence 57999999999988 889999999987 3446889999999999999999999999999 78889999999
Q ss_pred HHHhhhhhcCCCchHHHHHHHhhchhhhhh
Q 000127 1080 VWHHICTAYSDQSDLLQLAGKLCQNFEVLY 1109 (2127)
Q Consensus 1080 VWsN~~tyNgdgSEVveLAekLSQiFESrY 1109 (2127)
+|+||..||+.++.+..+|..|.+.|+..|
T Consensus 73 i~~Na~~yn~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 73 MFSNCYKYNPPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999998764
No 8
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.38 E-value=6.2e-13 Score=132.35 Aligned_cols=94 Identities=19% Similarity=0.325 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHHHHH
Q 000127 1003 MKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWH 1082 (2127)
Q Consensus 1003 mKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRLVWs 1082 (2127)
++.|..||+.++.+..+++|..||+.. ++++|..+|++||||+||+.|+..|.|. +...|.+|++++|.
T Consensus 2 ~~~c~~il~~l~~~~~s~~F~~pv~~~----------~~pdY~~iIk~PmDL~tI~~kl~~~~Y~-s~~ef~~D~~li~~ 70 (97)
T cd05505 2 LQKCEEILSKILKYRFSWPFREPVTAD----------EAEDYKKVITNPMDLQTMQTKCSCGSYS-SVQEFLDDMKLVFS 70 (97)
T ss_pred HHHHHHHHHHHHhCCCcccccCCCChh----------hcccHHHHcCCcCCHHHHHHHHcCCCCC-CHHHHHHHHHHHHH
Confidence 578999999999999999999999862 4789999999999999999999999999 67889999999999
Q ss_pred hhhhhcCCCchHHHHHHHhhchhhh
Q 000127 1083 HICTAYSDQSDLLQLAGKLCQNFEV 1107 (2127)
Q Consensus 1083 N~~tyNgdgSEVveLAekLSQiFES 1107 (2127)
||..||++++.|...|..|.+.|..
T Consensus 71 Na~~yN~~~s~i~~~a~~le~~f~~ 95 (97)
T cd05505 71 NAEKYYENGSYVLSCMRKTEQCCVN 95 (97)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999887764
No 9
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.37 E-value=1.5e-12 Score=131.18 Aligned_cols=101 Identities=20% Similarity=0.308 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcc---cccCCChhhhHhhH
Q 000127 1001 VIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAF---GAYGGSHEAFLEDV 1077 (2127)
Q Consensus 1001 lImKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~---G~Y~GSpE~FAEDV 1077 (2127)
.-.++|..||.+++.++.+++|..||+. ++++|..+|.+||||+||+.|+.. +.|. +.+.|.+|+
T Consensus 4 ~~~~~c~~il~~l~~~~~s~~F~~pv~~-----------~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~-s~~~f~~D~ 71 (109)
T cd05502 4 IDQRKCERLLLELYCHELSLPFHEPVSP-----------SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYS-SPEEFVADV 71 (109)
T ss_pred HHHHHHHHHHHHHHhCCCChhhcCCCCC-----------CCCCHHHHCCCCccHHHHHHHHhcCCCCCCC-CHHHHHHHH
Confidence 3489999999999999999999999976 267899999999999999999998 5888 788899999
Q ss_pred HHHHHhhhhhcCCCchHHHHHHHhhchhhhhhHHhh
Q 000127 1078 REVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEV 1113 (2127)
Q Consensus 1078 RLVWsN~~tyNgdgSEVveLAekLSQiFESrYkKqV 1113 (2127)
+++|+|+..||++++.+..+|..|...|+..+.+++
T Consensus 72 ~li~~Na~~yN~~~s~i~~~a~~l~~~f~~~~~~~~ 107 (109)
T cd05502 72 RLMFKNCYKFNEEDSEVAQAGKELELFFEEQLKEIL 107 (109)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999998888764
No 10
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.37 E-value=1.3e-12 Score=130.48 Aligned_cols=98 Identities=20% Similarity=0.271 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHHH
Q 000127 1001 VIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREV 1080 (2127)
Q Consensus 1001 lImKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRLV 1080 (2127)
.-.++|..+++.+..++.+++|..||++ ...++++|..+|.+||||++|+.|+..+.|. +...|..|++++
T Consensus 4 ~~~~~~~~ii~~l~~~~~a~~F~~pv~~--------~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~-s~~~f~~D~~li 74 (103)
T cd05500 4 HQHKFLLSSIRSLKRLKDARPFLVPVDP--------VKLNIPHYPTIIKKPMDLGTIERKLKSNVYT-SVEEFTADFNLM 74 (103)
T ss_pred HHHHHHHHHHHHHHcCCCChhhcCCCCc--------ccccCCCHHHHhcCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHH
Confidence 3489999999999999999999999987 3457889999999999999999999999998 778899999999
Q ss_pred HHhhhhhcCCCchHHHHHHHhhchhhh
Q 000127 1081 WHHICTAYSDQSDLLQLAGKLCQNFEV 1107 (2127)
Q Consensus 1081 WsN~~tyNgdgSEVveLAekLSQiFES 1107 (2127)
|+||..||+.++.+..+|..|.+.|+.
T Consensus 75 ~~Na~~yN~~~s~~~~~A~~l~~~fe~ 101 (103)
T cd05500 75 VDNCLTFNGPEHPVSQMGKRLQAAFEK 101 (103)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999988875
No 11
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.35 E-value=1.4e-12 Score=129.84 Aligned_cols=98 Identities=21% Similarity=0.382 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHh---cchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHH
Q 000127 1003 MKQCRKVLRCAAA---ADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVRE 1079 (2127)
Q Consensus 1003 mKrCr~VLkeLl~---sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRL 1079 (2127)
++.|..||..|+. ++.+++|..||++.. .++++|..+|.+||||++|..|+..+.|. +.+.|..|+++
T Consensus 2 ~~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~--------~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~-s~~ef~~D~~l 72 (102)
T cd05499 2 LKFCEEVLKELMKPKHSAYNWPFLDPVDPVA--------LNIPNYFSIIKKPMDLGTISKKLQNGQYQ-SAKEFERDVRL 72 (102)
T ss_pred hHHHHHHHHHHHcccCCcccchhcCCCCccc--------cCCCCHHHHhcCCCCHHHHHHHHcCCCCC-CHHHHHHHHHH
Confidence 5899999999996 467899999998742 34789999999999999999999999999 77789999999
Q ss_pred HHHhhhhhcCCCchHHHHHHHhhchhhhhh
Q 000127 1080 VWHHICTAYSDQSDLLQLAGKLCQNFEVLY 1109 (2127)
Q Consensus 1080 VWsN~~tyNgdgSEVveLAekLSQiFESrY 1109 (2127)
+|.|+..||++++.+..+|..|.+.|+..|
T Consensus 73 i~~N~~~yn~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 73 IFKNCYTFNPEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999998754
No 12
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.35 E-value=1.6e-12 Score=132.86 Aligned_cols=102 Identities=17% Similarity=0.293 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHHH
Q 000127 1001 VIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREV 1080 (2127)
Q Consensus 1001 lImKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRLV 1080 (2127)
..+..|..||..++..+.+++|..||+.+ ++++|..+|++||||+||..|+..|.|. +...|.+|+++|
T Consensus 12 ~~~~~c~~il~~l~~~~~s~~F~~pvd~~----------~~pdY~~vI~~PmDL~tI~~kL~~~~Y~-s~~~f~~Dv~LI 80 (115)
T cd05504 12 LNLSALEQLLVEIVKHKDSWPFLRPVSKI----------EVPDYYDIIKKPMDLGTIKEKLNMGEYK-LAEEFLSDIQLV 80 (115)
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCCCCcc----------ccccHHHHhcCcccHHHHHHHHccCCCC-CHHHHHHHHHHH
Confidence 35899999999999999999999999862 5789999999999999999999999998 677899999999
Q ss_pred HHhhhhhcCCCchHHHHHHHhhchhhhhhHHhh
Q 000127 1081 WHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEV 1113 (2127)
Q Consensus 1081 WsN~~tyNgdgSEVveLAekLSQiFESrYkKqV 1113 (2127)
|.||..||+.++.+..+|..|.+.|+..+++.-
T Consensus 81 ~~Na~~yN~~~s~i~~~A~~l~~~f~~~~~~~~ 113 (115)
T cd05504 81 FSNCFLYNPEHTSVYKAGTRLQRFFIKRCRKLG 113 (115)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999888754
No 13
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.33 E-value=2.6e-12 Score=129.46 Aligned_cols=96 Identities=21% Similarity=0.307 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHHHHH
Q 000127 1003 MKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWH 1082 (2127)
Q Consensus 1003 mKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRLVWs 1082 (2127)
+++|+.||.+|..+..++.|..+ + .++++|+.+|++||||+||+.|+..+.|. +++.|.+||++||.
T Consensus 4 l~~ce~il~~l~~~~~s~~f~~~--p----------~~~pdY~~iIk~PMDL~tI~~kL~~~~Y~-s~~ef~~D~~Lif~ 70 (102)
T cd05501 4 LLKCEFLLLKVYCMSKSGFFISK--P----------YYIRDYCQGIKEPMWLNKVKERLNERVYH-TVEGFVRDMRLIFH 70 (102)
T ss_pred HHHHHHHHHHHHhCcccccccCC--C----------CCCCchHHHcCCCCCHHHHHHHHcCCCCC-CHHHHHHHHHHHHH
Confidence 57899999999999999999442 2 26889999999999999999999999999 78889999999999
Q ss_pred hhhhhcCCCchHHHHHHHhhchhhhhhHHh
Q 000127 1083 HICTAYSDQSDLLQLAGKLCQNFEVLYKKE 1112 (2127)
Q Consensus 1083 N~~tyNgdgSEVveLAekLSQiFESrYkKq 1112 (2127)
||..||+++ .+..+|..|+..|+..|.+.
T Consensus 71 N~~~yN~~~-~~~~~a~~L~~~Fek~~~~~ 99 (102)
T cd05501 71 NHKLFYKDD-DFGQVGITLEKKFEKNFKEV 99 (102)
T ss_pred HHHHHcCCC-HHHHHHHHHHHHHHHHHHHH
Confidence 999999999 99999999999999888754
No 14
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.32 E-value=3.3e-12 Score=128.20 Aligned_cols=98 Identities=21% Similarity=0.246 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHHH
Q 000127 1001 VIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREV 1080 (2127)
Q Consensus 1001 lImKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRLV 1080 (2127)
..-+.|..|++.+..+..+++|.+||+. .+.++|..+|++||||+||+.|+..|.|. +.+.|..|++++
T Consensus 3 ~~~~~~~~il~~l~~~~~a~~F~~pV~~----------~~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~-s~~ef~~D~~li 71 (104)
T cd05507 3 AWKKAILLVYRTLASHRYASVFLKPVTE----------DIAPGYHSVVYRPMDLSTIKKNIENGTIR-STAEFQRDVLLM 71 (104)
T ss_pred HHHHHHHHHHHHHHcCCCCHhhcCCCCc----------cccCCHHHHhCCCcCHHHHHHHHhcCCCC-CHHHHHHHHHHH
Confidence 3468999999999999999999999976 25789999999999999999999999998 788899999999
Q ss_pred HHhhhhhcCCCchHHHHHHHhhchhhhhh
Q 000127 1081 WHHICTAYSDQSDLLQLAGKLCQNFEVLY 1109 (2127)
Q Consensus 1081 WsN~~tyNgdgSEVveLAekLSQiFESrY 1109 (2127)
|.||..||++++.+..+|..+...+....
T Consensus 72 ~~Na~~yN~~~s~v~~~A~~l~~~~~~~~ 100 (104)
T cd05507 72 FQNAIMYNSSDHDVYLMAVEMQREVMSQI 100 (104)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999987665543
No 15
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.31 E-value=4.3e-12 Score=125.83 Aligned_cols=99 Identities=19% Similarity=0.310 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHHHH
Q 000127 1002 IMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVW 1081 (2127)
Q Consensus 1002 ImKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRLVW 1081 (2127)
+.++|+.||..++.++.+++|..||++. .+++|..+|++||||.||..|+..+.|. +...|..||+++|
T Consensus 2 ~~~~~~~il~~l~~~~~a~~F~~pv~~~----------~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~-s~~~f~~Dv~li~ 70 (101)
T cd05509 2 LYTQLKKVLDSLKNHKSAWPFLEPVDKE----------EAPDYYDVIKKPMDLSTMEEKLENGYYV-TLEEFVADLKLIF 70 (101)
T ss_pred hHHHHHHHHHHHHhCCCchhhcCCCChh----------hcCCHHHHhcCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHHH
Confidence 3689999999999999999999999873 2789999999999999999999999999 7888999999999
Q ss_pred HhhhhhcCCCchHHHHHHHhhchhhhhhHH
Q 000127 1082 HHICTAYSDQSDLLQLAGKLCQNFEVLYKK 1111 (2127)
Q Consensus 1082 sN~~tyNgdgSEVveLAekLSQiFESrYkK 1111 (2127)
.||..||+.++.+..+|..|...|+..+++
T Consensus 71 ~Na~~yN~~~s~~~~~a~~l~~~f~~~~~~ 100 (101)
T cd05509 71 DNCRLYNGPDTEYYKCANKLEKFFWKKLKE 100 (101)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999998876653
No 16
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.27 E-value=9.5e-12 Score=125.59 Aligned_cols=99 Identities=22% Similarity=0.289 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHhcch------hhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHh
Q 000127 1002 IMKQCRKVLRCAAAADE------ERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLE 1075 (2127)
Q Consensus 1002 ImKrCr~VLkeLl~sd~------s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAE 1075 (2127)
+.++|+.||+.++.... +++|.+|++. .++++|+.+|++||||++|+.|+..|.|. +...|..
T Consensus 2 l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~----------~~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~-s~~ef~~ 70 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSR----------KELPEYYELIRKPVDFKKIKERIRNHKYR-SLEDLEK 70 (107)
T ss_pred HHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCc----------ccCCCHHHHcCCCCCHHHHHHHHccCCCC-CHHHHHH
Confidence 47899999999997666 6777777654 35889999999999999999999999998 6778999
Q ss_pred hHHHHHHhhhhhcCCCchHHHHHHHhhchhhhhhHH
Q 000127 1076 DVREVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKK 1111 (2127)
Q Consensus 1076 DVRLVWsN~~tyNgdgSEVveLAekLSQiFESrYkK 1111 (2127)
|++++|.|+..||+.++.|..+|..|...|+..+++
T Consensus 71 D~~li~~Na~~yN~~~s~i~~~a~~l~~~f~~~~~~ 106 (107)
T cd05516 71 DVMLLCQNAQTFNLEGSLIYEDSIVLQSVFKSARQK 106 (107)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999987765
No 17
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.24 E-value=1.4e-11 Score=125.63 Aligned_cols=101 Identities=21% Similarity=0.291 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHhc-chhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHH
Q 000127 1000 DVIMKQCRKVLRCAAAA-DEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVR 1078 (2127)
Q Consensus 1000 dlImKrCr~VLkeLl~s-d~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVR 1078 (2127)
+.+..+|+.||+.|..+ ..+++|..||++. .+++|..+|++||||+||+.|+..+.|. +.+.|.+|++
T Consensus 6 ~~~~~~~~~il~~l~~~~~~s~~F~~pv~~~----------~~pdY~~iIk~PmdL~tI~~kl~~~~Y~-s~~ef~~D~~ 74 (112)
T cd05510 6 EEFYESLDKVLNELKTYTEHSTPFLTKVSKR----------EAPDYYDIIKKPMDLGTMLKKLKNLQYK-SKAEFVDDLN 74 (112)
T ss_pred HHHHHHHHHHHHHHHhcCccccchhcCCChh----------hcCCHHHHhcCccCHHHHHHHHhCCCCC-CHHHHHHHHH
Confidence 44689999999999988 8999999999872 4789999999999999999999999999 6888999999
Q ss_pred HHHHhhhhhcCCCc-hHHHHHHHhhchhhhhhHH
Q 000127 1079 EVWHHICTAYSDQS-DLLQLAGKLCQNFEVLYKK 1111 (2127)
Q Consensus 1079 LVWsN~~tyNgdgS-EVveLAekLSQiFESrYkK 1111 (2127)
++|.||..||++++ .+..+|..|...|+.....
T Consensus 75 Li~~N~~~yN~~~s~~~~~~A~~l~~~~~~~~~~ 108 (112)
T cd05510 75 LIWKNCLLYNSDPSHPLRRHANFMKKKAEHLLKL 108 (112)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999765 5778999998887766554
No 18
>PF05964 FYRN: F/Y-rich N-terminus; InterPro: IPR003888 The "FY-rich" domain N-terminal region is sometimes closely juxtaposed with the C-terminal region (IPR003889 from INTERPRO), but sometimes is far distant. It is of unknown function, but occurs frequently in chromatin-associated proteins like trithorax and its homologues.; GO: 0005634 nucleus; PDB: 2WZO_A.
Probab=99.22 E-value=5.9e-12 Score=113.94 Aligned_cols=48 Identities=31% Similarity=0.663 Sum_probs=36.3
Q ss_pred ecCeEEEEecccc-CCCCCCCCcceeeccccc-----ccccCCCccEEEEEecc
Q 000127 298 FEDFCLLAVGEVD-PRPSYHNSSQIWPVGYKS-----SWHDKVTGSLFVCDVSD 345 (2127)
Q Consensus 298 ~~~~~v~slg~i~-~r~~yh~~~~i~pvgyks-----~~~~~~~~~l~~c~v~d 345 (2127)
.|+++|+|||+|. +||+||++++|||+||+| |+.|+.+.+.|+|+|+|
T Consensus 1 igsl~v~sLG~i~~~~~~fh~~~~IyP~Gy~s~R~y~S~~~p~~~~~Y~~~Ild 54 (54)
T PF05964_consen 1 IGSLTVHSLGKIVPDRPAFHSERYIYPVGYKSSRLYWSTVDPRRRCRYTCEILD 54 (54)
T ss_dssp -TTEEEEEEEE---SSGGGB-SS-B--EEEEEEEEEE-SS-TTSEEEEEEEEE-
T ss_pred CCceEEEECeEEeCCCCCccCCCEEeeCCEEEEEEEccccCCCCEEEEEEEEeC
Confidence 4889999999997 778999999999999999 57799999999999998
No 19
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.20 E-value=3.2e-11 Score=120.75 Aligned_cols=95 Identities=21% Similarity=0.280 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHHH
Q 000127 1001 VIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREV 1080 (2127)
Q Consensus 1001 lImKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRLV 1080 (2127)
++-+..+.+++.|. ++.+++|.+||++. .+++|..+|++||||+||+.|+..|.|. +.+.|.+|++++
T Consensus 3 ~l~~~L~~~~~~~~-~~~s~~F~~PV~~~----------~~pdY~~iIk~PmDL~tI~~kl~~~~Y~-s~~ef~~Dv~LI 70 (99)
T cd05508 3 QLSKLLKFALERMK-QPGAEPFLKPVDLE----------QFPDYAQYVFKPMDLSTLEKNVRKKAYG-STDAFLADAKWI 70 (99)
T ss_pred HHHHHHHHHHHHHh-CcCcchhcCCCChh----------hCCCHHHHcCCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHH
Confidence 34456677888888 89999999999872 3789999999999999999999999999 788899999999
Q ss_pred HHhhhhhcCCCchHHHHHHHhhchhhh
Q 000127 1081 WHHICTAYSDQSDLLQLAGKLCQNFEV 1107 (2127)
Q Consensus 1081 WsN~~tyNgdgSEVveLAekLSQiFES 1107 (2127)
|.||..||++++.+..+|..+...++.
T Consensus 71 ~~Na~~YN~~~s~i~~~A~~l~~~~~~ 97 (99)
T cd05508 71 LHNAIIYNGGDHKLTQAAKAIVKICEQ 97 (99)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999998776653
No 20
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.20 E-value=2.5e-11 Score=121.32 Aligned_cols=91 Identities=19% Similarity=0.288 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHHHH
Q 000127 1002 IMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVW 1081 (2127)
Q Consensus 1002 ImKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRLVW 1081 (2127)
+.+.|..||+.+..++.++.|..||+.. ..++|..+|++||||+||+.|+..+.|. +.+.|.+|++++|
T Consensus 2 l~~~l~~il~~l~~~~~~~~F~~PV~~~----------~~pdY~~vIk~PmDL~tI~~kl~~~~Y~-s~~~f~~D~~li~ 70 (98)
T cd05513 2 LQKALEQLIRQLQRKDPHGFFAFPVTDF----------IAPGYSSIIKHPMDFSTMKEKIKNNDYQ-SIEEFKDDFKLMC 70 (98)
T ss_pred HHHHHHHHHHHHHcCCccccccCcCCcc----------ccccHHHHHcCccCHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Confidence 3578999999999999999999999862 3689999999999999999999999999 7888999999999
Q ss_pred HhhhhhcCCCchHHHHHHHhhc
Q 000127 1082 HHICTAYSDQSDLLQLAGKLCQ 1103 (2127)
Q Consensus 1082 sN~~tyNgdgSEVveLAekLSQ 1103 (2127)
.||..||++++.+..+|..|.+
T Consensus 71 ~Na~~yN~~~s~~~~~A~~L~~ 92 (98)
T cd05513 71 ENAMKYNKPDTIYYKAAKKLLH 92 (98)
T ss_pred HHHHHHCCCCCHHHHHHHHHHH
Confidence 9999999999999999998854
No 21
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.15 E-value=7.4e-11 Score=120.42 Aligned_cols=100 Identities=18% Similarity=0.250 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHHHHH
Q 000127 1003 MKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWH 1082 (2127)
Q Consensus 1003 mKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRLVWs 1082 (2127)
=..|+.|++.++.++.+++|.+||+.. .+++|..+|++||||+||..|+..+.|. +...|.+|++++|.
T Consensus 5 r~~L~~il~~l~~~~~~~~F~~pv~~~----------~~pdY~~vI~~PmdL~tI~~kl~~~~Y~-s~~ef~~Dv~li~~ 73 (112)
T cd05528 5 RLFLRDVLKRLASDKRFNAFTKPVDEE----------EVPDYYEIIKQPMDLQTILQKLDTHQYL-TAKDFLKDIDLIVT 73 (112)
T ss_pred HHHHHHHHHHHHhCCCchhhcCCCCcc----------ccCcHHHHHcCCCCHHHHHHHHcCCCcC-CHHHHHHHHHHHHH
Confidence 346789999999999999999999873 3789999999999999999999999998 77889999999999
Q ss_pred hhhhhcCCC----chHHHHHHHhhchhhhhhHHhh
Q 000127 1083 HICTAYSDQ----SDLLQLAGKLCQNFEVLYKKEV 1113 (2127)
Q Consensus 1083 N~~tyNgdg----SEVveLAekLSQiFESrYkKqV 1113 (2127)
||..||+.+ +.+..+|..|.+.+...+.+.+
T Consensus 74 Na~~yN~~~s~~~s~i~~~A~~L~~~~~~~~~~~~ 108 (112)
T cd05528 74 NALEYNPDRDPADKLIRSRACELRDEVHAMIEAEL 108 (112)
T ss_pred HHHHHCCCCCccccHHHHHHHHHHHHHHHHHHhcC
Confidence 999999984 6899999999988888777654
No 22
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.13 E-value=7.1e-11 Score=117.90 Aligned_cols=89 Identities=18% Similarity=0.265 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHHHHHh
Q 000127 1004 KQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHH 1083 (2127)
Q Consensus 1004 KrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRLVWsN 1083 (2127)
-.++.+|..|..++.+++|..||+.. .+++|..+|++||||+||+.|+..+.|. +.+.|..|++++|.|
T Consensus 4 ~~l~~il~~l~~~~~~~~F~~pVd~~----------~~pdY~~iIk~PmDL~tI~~kl~~~~Y~-s~~ef~~D~~li~~N 72 (98)
T cd05512 4 VLLRKTLDQLQEKDTAEIFSEPVDLS----------EVPDYLDHIKQPMDFSTMRKKLESQRYR-TLEDFEADFNLIINN 72 (98)
T ss_pred HHHHHHHHHHHhCCCchhhcCCCCcc----------ccCCHHHHhcCCcCHHHHHHHHhCCCCC-CHHHHHHHHHHHHHH
Confidence 35788999999999999999999872 4789999999999999999999999999 678899999999999
Q ss_pred hhhhcCCCchHHHHHHHhhc
Q 000127 1084 ICTAYSDQSDLLQLAGKLCQ 1103 (2127)
Q Consensus 1084 ~~tyNgdgSEVveLAekLSQ 1103 (2127)
|..||+.++.+...|..|..
T Consensus 73 a~~yN~~~s~~~~~A~~l~~ 92 (98)
T cd05512 73 CLAYNAKDTIFYRAAVRLRD 92 (98)
T ss_pred HHHHCCCCCHHHHHHHHHHH
Confidence 99999999999999988764
No 23
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.07 E-value=2.6e-10 Score=114.24 Aligned_cols=96 Identities=19% Similarity=0.256 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhcc------hhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhh
Q 000127 1003 MKQCRKVLRCAAAAD------EERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLED 1076 (2127)
Q Consensus 1003 mKrCr~VLkeLl~sd------~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAED 1076 (2127)
-+.|+.|++.++... -+++|.+|++. ...++|..+|++||||++|..|+..+.|. +...|..|
T Consensus 2 ~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~----------~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~-s~~~f~~D 70 (103)
T cd05519 2 KAAMLEIYDAVLNCEDETGRKLSELFLEKPSK----------KLYPDYYVIIKRPIALDQIKRRIEGRAYK-SLEEFLED 70 (103)
T ss_pred HHHHHHHHHHHHHhcCcCCCchhHHhcCCCCC----------CCCcCHHHHcCCCcCHHHHHHHHccCCCC-CHHHHHHH
Confidence 478999999999444 36777777654 34689999999999999999999999999 77889999
Q ss_pred HHHHHHhhhhhcCCCchHHHHHHHhhchhhhhh
Q 000127 1077 VREVWHHICTAYSDQSDLLQLAGKLCQNFEVLY 1109 (2127)
Q Consensus 1077 VRLVWsN~~tyNgdgSEVveLAekLSQiFESrY 1109 (2127)
++++|.|+..||+.++.+..+|..|...|+..|
T Consensus 71 ~~li~~Na~~yn~~~s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 71 FHLMFANARTYNQEGSIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999998887654
No 24
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.07 E-value=2.5e-10 Score=116.31 Aligned_cols=96 Identities=18% Similarity=0.259 Sum_probs=86.4
Q ss_pred HHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHHHHHhhhh
Q 000127 1007 RKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICT 1086 (2127)
Q Consensus 1007 r~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRLVWsN~~t 1086 (2127)
+.|+..|..+..+++|..||++. ..++|..+|.+||||+||+.|+..+.|. +.+.|.+|++++|.||..
T Consensus 6 ~~ii~~l~~~~~s~~F~~pv~~~----------~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~-s~~ef~~Dv~li~~Na~~ 74 (112)
T cd05511 6 DEIVNELKNLPDSWPFHTPVNKK----------KVPDYYKIIKRPMDLQTIRKKISKHKYQ-SREEFLEDIELIVDNSVL 74 (112)
T ss_pred HHHHHHHHhCCCchhhcCCCChh----------hcccHHHHhcCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHHH
Confidence 45788899999999999999873 3688999999999999999999999998 788899999999999999
Q ss_pred hcCCCchHHHHHHHhhchhhhhhHHhh
Q 000127 1087 AYSDQSDLLQLAGKLCQNFEVLYKKEV 1113 (2127)
Q Consensus 1087 yNgdgSEVveLAekLSQiFESrYkKqV 1113 (2127)
||+.++.+..+|..|...|+..+....
T Consensus 75 yN~~~s~i~~~A~~l~~~~~~~~~~~~ 101 (112)
T cd05511 75 YNGPDSVYTKKAKEMLELAEELLAERE 101 (112)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999988887666543
No 25
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.06 E-value=4e-10 Score=115.08 Aligned_cols=100 Identities=17% Similarity=0.218 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHhcchh------hhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhh
Q 000127 1003 MKQCRKVLRCAAAADEE------RVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLED 1076 (2127)
Q Consensus 1003 mKrCr~VLkeLl~sd~s------~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAED 1076 (2127)
.+.|..|+..+...... ..|.++.. ....++|+.+|++||||+||+.|+..+.|. +...|.+|
T Consensus 4 ~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~----------~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~-s~~~f~~D 72 (113)
T cd05524 4 IAVCQELYDTIRNYKSEDGRILCESFIRVPK----------RRNEPEYYEVVSNPIDLLKIQQKLKTEEYD-DVDDLTAD 72 (113)
T ss_pred HHHHHHHHHHHHhhcccCCCchhHHHhcCCC----------cccCCCHHHHhCCccCHHHHHHHhCcCCCC-CHHHHHHH
Confidence 78999999999954333 34554433 346789999999999999999999999999 78889999
Q ss_pred HHHHHHhhhhhcCCCchHHHHHHHhhchhhhhhHHhh
Q 000127 1077 VREVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEV 1113 (2127)
Q Consensus 1077 VRLVWsN~~tyNgdgSEVveLAekLSQiFESrYkKqV 1113 (2127)
+++||.|+..||+.++.+..+|..|.+.|+..+.+++
T Consensus 73 ~~lm~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 109 (113)
T cd05524 73 FELLINNAKAYYKPDSPEHKDACKLWELFLSARNEVL 109 (113)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999998877664
No 26
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.06 E-value=3.5e-10 Score=113.99 Aligned_cols=96 Identities=13% Similarity=0.225 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHhcch------hhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhh
Q 000127 1003 MKQCRKVLRCAAAADE------ERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLED 1076 (2127)
Q Consensus 1003 mKrCr~VLkeLl~sd~------s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAED 1076 (2127)
+++|+.|+..+..... +++|.+|++. .++++|..+|++||||+||+.|+..+.|. +.+.|..|
T Consensus 2 ~~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~----------~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~-s~~ef~~D 70 (105)
T cd05515 2 QQKLWELYNAVKNYTDGRGRRLSLIFMRLPSK----------SEYPDYYDVIKKPIDMEKIRSKIEGNQYQ-SLDDMVSD 70 (105)
T ss_pred hHHHHHHHHHHHHhhCcCCCcccHHhccCCCc----------ccCCcHHHHcCCCcCHHHHHHHHccCCCC-CHHHHHHH
Confidence 5789999999995433 4566666544 45789999999999999999999999998 68889999
Q ss_pred HHHHHHhhhhhcCCCchHHHHHHHhhchhhhhh
Q 000127 1077 VREVWHHICTAYSDQSDLLQLAGKLCQNFEVLY 1109 (2127)
Q Consensus 1077 VRLVWsN~~tyNgdgSEVveLAekLSQiFESrY 1109 (2127)
++++|.|+..||+.++.+..+|..|...|...+
T Consensus 71 ~~l~~~Na~~yN~~~s~i~~~A~~L~~~~~~~~ 103 (105)
T cd05515 71 FVLMFDNACKYNEPDSQIYKDALTLQKVLLETK 103 (105)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988877654
No 27
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.04 E-value=5.4e-10 Score=116.36 Aligned_cols=100 Identities=21% Similarity=0.132 Sum_probs=89.7
Q ss_pred hHHHHHHHHHHHHHHH---hcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHh
Q 000127 999 PDVIMKQCRKVLRCAA---AADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLE 1075 (2127)
Q Consensus 999 SdlImKrCr~VLkeLl---~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAE 1075 (2127)
.+...++|..+++.++ ....+++|.+||+... +.++|..+|++||||+||..|+..+.|. +.+.|.+
T Consensus 22 ~~~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~---------~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~-s~~~f~~ 91 (128)
T cd05529 22 RDEERERLISGLDKLLLSLQLEIAEYFEYPVDLRA---------WYPDYWNRVPVPMDLETIRSRLENRYYR-SLEALRH 91 (128)
T ss_pred CHHHHHHHHHHHHHHHhcccCcccccccCCCCccc---------cCCcHHHHcCCCCCHHHHHHHHhcCCCC-CHHHHHH
Confidence 3455888999999999 8999999999998732 5789999999999999999999999998 6888999
Q ss_pred hHHHHHHhhhhhcCCCchHHHHHHHhhchhhhh
Q 000127 1076 DVREVWHHICTAYSDQSDLLQLAGKLCQNFEVL 1108 (2127)
Q Consensus 1076 DVRLVWsN~~tyNgdgSEVveLAekLSQiFESr 1108 (2127)
|++++|.||..||+.++.+..+|..|.+.|...
T Consensus 92 Dv~Li~~Na~~yN~~~s~i~~~A~~l~~~~~~~ 124 (128)
T cd05529 92 DVRLILSNAETFNEPNSEIAKKAKRLSDWLLRI 124 (128)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998877654
No 28
>smart00297 BROMO bromo domain.
Probab=99.03 E-value=5.8e-10 Score=109.99 Aligned_cols=101 Identities=23% Similarity=0.310 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHH
Q 000127 1000 DVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVRE 1079 (2127)
Q Consensus 1000 dlImKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRL 1079 (2127)
..+.+.|..|++.+..+..+++|.+|++.. -+++|..+|.+||||++|..|+..+.|. +...|.+|+++
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~----------~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~-s~~ef~~D~~l 74 (107)
T smart00297 6 KKLQSLLKAVLDKLDSHRLSWPFLKPVDRK----------EAPDYYDIIKKPMDLSTIKKKLENGKYS-SVEEFVADVQL 74 (107)
T ss_pred HHHHHHHHHHHHHHHhCccchhhccCCChh----------hccCHHHHhcCCCCHHHHHHHHhcCCCC-CHHHHHHHHHH
Confidence 345677888888888888999999999773 1678999999999999999999999998 68889999999
Q ss_pred HHHhhhhhcCCCchHHHHHHHhhchhhhhhHH
Q 000127 1080 VWHHICTAYSDQSDLLQLAGKLCQNFEVLYKK 1111 (2127)
Q Consensus 1080 VWsN~~tyNgdgSEVveLAekLSQiFESrYkK 1111 (2127)
+|.|+..||+.++.+..+|..|...|+..+.+
T Consensus 75 i~~Na~~~n~~~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 75 MFSNAKTYNGPDSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999998887653
No 29
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.01 E-value=6e-10 Score=105.56 Aligned_cols=84 Identities=24% Similarity=0.374 Sum_probs=76.2
Q ss_pred HHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHHHHHhhh
Q 000127 1006 CRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHIC 1085 (2127)
Q Consensus 1006 Cr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRLVWsN~~ 1085 (2127)
|+.||+.|+.++.++.|.+|++. ..+++|..+|.+||||.+|..|+.+|.|. +.+.|..||+++|.|+.
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~----------~~~p~y~~~i~~P~dL~~I~~kl~~~~Y~-s~~~f~~Dv~~i~~Na~ 69 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDP----------KEYPDYYEIIKNPMDLSTIRKKLENGKYK-SIEEFEADVRLIFQNAR 69 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHT----------TTSTTHHHHSSSS--HHHHHHHHHTTSSS-SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCchhhcCCCCh----------hhCCCHHHHHhhccchhhhhHHhhccchh-hHHHHHHHHHHHHHHHH
Confidence 99999999999999999999954 45779999999999999999999999999 78889999999999999
Q ss_pred hhcCCCchHHHHHHH
Q 000127 1086 TAYSDQSDLLQLAGK 1100 (2127)
Q Consensus 1086 tyNgdgSEVveLAek 1100 (2127)
.||+.++.+..+|++
T Consensus 70 ~yn~~~s~~~~~A~~ 84 (84)
T PF00439_consen 70 RYNPPDSPIYKAAEK 84 (84)
T ss_dssp HHSCTTSHHHHHHHH
T ss_pred HHCCCcCHHHHHhcC
Confidence 999999999988864
No 30
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.00 E-value=7.2e-10 Score=105.21 Aligned_cols=95 Identities=27% Similarity=0.339 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHhc--chhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHHH
Q 000127 1003 MKQCRKVLRCAAAA--DEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREV 1080 (2127)
Q Consensus 1003 mKrCr~VLkeLl~s--d~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRLV 1080 (2127)
...|..++..+... ..+++|..|++. ..+++|..+|++||||++|..|+..+.|. +...|.+|++++
T Consensus 2 ~~~~~~i~~~l~~~~~~~~~~F~~~~~~----------~~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~-s~~~f~~D~~li 70 (99)
T cd04369 2 KKKLRSLLDALKKLKRDLSEPFLEPVDP----------KEAPDYYEVIKNPMDLSTIKKKLKNGEYK-SLEEFEADVRLI 70 (99)
T ss_pred HHHHHHHHHHHHhhcccccHHHhcCCCh----------hcCCCHHHHHhCcccHHHHHHHHhcCCCC-CHHHHHHHHHHH
Confidence 46799999999988 899999999977 34678999999999999999999999998 788899999999
Q ss_pred HHhhhhhcCCCchHHHHHHHhhchhhhh
Q 000127 1081 WHHICTAYSDQSDLLQLAGKLCQNFEVL 1108 (2127)
Q Consensus 1081 WsN~~tyNgdgSEVveLAekLSQiFESr 1108 (2127)
|.|+..||+.++.+..+|..|...|+..
T Consensus 71 ~~Na~~~n~~~~~~~~~a~~l~~~~~~~ 98 (99)
T cd04369 71 FSNAKTYNGPGSPIYKDAKKLEKLFEKL 98 (99)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998877754
No 31
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.97 E-value=1.6e-09 Score=109.89 Aligned_cols=95 Identities=18% Similarity=0.284 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHhcch------hhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHh
Q 000127 1002 IMKQCRKVLRCAAAADE------ERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLE 1075 (2127)
Q Consensus 1002 ImKrCr~VLkeLl~sd~------s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAE 1075 (2127)
+-+.|+.|+..+..... +++|.++.+. ..+++|..+|++||||.+|+.++..|.|. +.+.|.+
T Consensus 3 l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k----------~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~-s~~ef~~ 71 (106)
T cd05525 3 LAQVLKEICDAIITYKDSNGQSLAIPFINLPSK----------KKNPDYYERITDPVDLSTIEKQILTGYYK-TPEAFDS 71 (106)
T ss_pred HHHHHHHHHHHHHHhhccCCCcccHhhccCCCc----------ccCCchhhhCCCCcCHHHHHHHHcCCCCC-CHHHHHH
Confidence 45678889999884433 3555555443 45789999999999999999999999999 7888999
Q ss_pred hHHHHHHhhhhhcCCCchHHHHHHHhhchhhh
Q 000127 1076 DVREVWHHICTAYSDQSDLLQLAGKLCQNFEV 1107 (2127)
Q Consensus 1076 DVRLVWsN~~tyNgdgSEVveLAekLSQiFES 1107 (2127)
|+++||.|+..||++++.+..+|..|.+.|+.
T Consensus 72 D~~l~f~Na~~yn~~~S~i~~~A~~L~~~f~~ 103 (106)
T cd05525 72 DMLKVFRNAEKYYGRKSPIGRDVCRLRKAYYQ 103 (106)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988874
No 32
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=98.92 E-value=2.3e-09 Score=108.08 Aligned_cols=98 Identities=18% Similarity=0.230 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHHHHHh
Q 000127 1004 KQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHH 1083 (2127)
Q Consensus 1004 KrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRLVWsN 1083 (2127)
+.|+.++..++..... .+.|+...++.+. +...+++|..+|++||||++|+.|+..+.|. +...|..|+++||.|
T Consensus 3 ~~~~~l~~~i~~~~d~--~gr~~~~~F~~lp--~~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~-s~~~f~~D~~lm~~N 77 (103)
T cd05517 3 QILEQLLEAVMTATDP--SGRLISELFQKLP--SKVLYPDYYAVIKEPIDLKTIAQRIQSGYYK-SIEDMEKDLDLMVKN 77 (103)
T ss_pred HHHHHHHHHHHHhhCc--CCCChhHHHhcCC--CCCCCCCHHHHcCCCcCHHHHHHHHCcCCCC-CHHHHHHHHHHHHHH
Confidence 5688999999955443 3444444444432 2356789999999999999999999999999 788899999999999
Q ss_pred hhhhcCCCchHHHHHHHhhchhh
Q 000127 1084 ICTAYSDQSDLLQLAGKLCQNFE 1106 (2127)
Q Consensus 1084 ~~tyNgdgSEVveLAekLSQiFE 1106 (2127)
+..||++++.+...|..|...|+
T Consensus 78 a~~yN~~~s~i~~~A~~l~~~f~ 100 (103)
T cd05517 78 AKTFNEPGSQVYKDANAIKKIFT 100 (103)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999987775
No 33
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=98.91 E-value=2.6e-09 Score=107.80 Aligned_cols=98 Identities=13% Similarity=0.225 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHHHHHh
Q 000127 1004 KQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHH 1083 (2127)
Q Consensus 1004 KrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRLVWsN 1083 (2127)
||++.|++.++.... .-+.++...++.+. ...++++|..+|++||||+||+.++..+.|. +...|.+|+++||.|
T Consensus 3 ~~~~~l~~~v~~~~d--~~gr~~~~~F~~~p--~~~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~-s~~ef~~D~~li~~N 77 (103)
T cd05518 3 KRMLALFLYVLEYRE--GSGRRLCDLFMEKP--SKKDYPDYYKIILEPIDLKTIEHNIRNDKYA-TEEELMDDFKLMFRN 77 (103)
T ss_pred HHHHHHHHHHHHhhc--cCCCcccHHHhcCC--CcccCccHHHHcCCCcCHHHHHHHHCCCCCC-CHHHHHHHHHHHHHH
Confidence 677888888884321 22333333333211 2356789999999999999999999999999 788899999999999
Q ss_pred hhhhcCCCchHHHHHHHhhchhh
Q 000127 1084 ICTAYSDQSDLLQLAGKLCQNFE 1106 (2127)
Q Consensus 1084 ~~tyNgdgSEVveLAekLSQiFE 1106 (2127)
|..||+.++.|..+|..|...|+
T Consensus 78 a~~yN~~~s~i~~~A~~le~~~~ 100 (103)
T cd05518 78 ARHYNEEGSQVYEDANILEKVLK 100 (103)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999976665
No 34
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.88 E-value=4.7e-10 Score=127.08 Aligned_cols=69 Identities=38% Similarity=0.977 Sum_probs=55.4
Q ss_pred hHHHHhhhccCCCCCCcCcc---ccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1136 EMEDILESASEIPKAPWDEG---VCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1136 eL~diies~s~lPr~~w~dd---~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
.++....-...+..+.|+|. .|.+||...+.++||+||.||++||||||.||+.+.|+|.|.|..|...
T Consensus 260 clqft~nm~~avk~yrwqcieck~csicgtsenddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~~ 331 (336)
T KOG1244|consen 260 CLQFTANMIAAVKTYRWQCIECKYCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLEE 331 (336)
T ss_pred hhhhhHHHHHHHHhheeeeeecceeccccCcCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHHH
Confidence 34443333334556788765 5667888888999999999999999999999999999999999999754
No 35
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=98.84 E-value=5.4e-09 Score=105.41 Aligned_cols=79 Identities=16% Similarity=0.239 Sum_probs=69.7
Q ss_pred hhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHHHHHhhhhhcCCCchHHHH
Q 000127 1018 EERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICTAYSDQSDLLQL 1097 (2127)
Q Consensus 1018 ~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRLVWsN~~tyNgdgSEVveL 1097 (2127)
-+++|.++++. ...++|..+|++||||+||..|+..+.|. +...|..|+++||.|+..||+.++.+..+
T Consensus 23 ~s~pF~~~p~~----------~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~-s~~~f~~D~~lm~~Na~~yN~~~s~i~~~ 91 (103)
T cd05520 23 LAEPFLKLPSK----------RKYPDYYQEIKNPISLQQIRTKLKNGEYE-TLEELEADLNLMFENAKRYNVPNSRIYKD 91 (103)
T ss_pred ccHhhhcCCCc----------ccCCCHHHHcCCCcCHHHHHHHHccCCCC-CHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 44556665544 35789999999999999999999999999 77889999999999999999999999999
Q ss_pred HHHhhchhhh
Q 000127 1098 AGKLCQNFEV 1107 (2127)
Q Consensus 1098 AekLSQiFES 1107 (2127)
|..|.+.|+.
T Consensus 92 A~~L~~~f~~ 101 (103)
T cd05520 92 AEKLQKLMQA 101 (103)
T ss_pred HHHHHHHHHH
Confidence 9999988874
No 36
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.70 E-value=2.8e-08 Score=101.04 Aligned_cols=99 Identities=14% Similarity=0.155 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHHHH
Q 000127 1002 IMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVW 1081 (2127)
Q Consensus 1002 ImKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRLVW 1081 (2127)
+-++|+.+++.+....... +.++...+..+. +...+++|..+|++||||++|+.|+.. |. +.+.|.+|++++|
T Consensus 2 l~~~~~~l~~~i~~~~~~~--g~~~~~~F~~lp--~~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~-s~~ef~~D~~li~ 74 (106)
T cd05521 2 LSKKLKPLYDGIYTLKEEN--GIEIHPIFNVLP--LRKDYPDYYKIIKNPLSLNTVKKRLPH--YT-NAQEFVNDLAQIP 74 (106)
T ss_pred HHHHHHHHHHHHHhhcCcC--CCCchHhhhcCC--ccccCccHHHHhcCCCCHHHHHHHHHc--CC-CHHHHHHHHHHHH
Confidence 4678999999999554432 455555554432 334788999999999999999999998 87 6888999999999
Q ss_pred HhhhhhcCCCchHHHHHHHhhchhhh
Q 000127 1082 HHICTAYSDQSDLLQLAGKLCQNFEV 1107 (2127)
Q Consensus 1082 sN~~tyNgdgSEVveLAekLSQiFES 1107 (2127)
.|+..||+.++.+...|..|...|..
T Consensus 75 ~Na~~yN~~~s~i~~~A~~le~~~~~ 100 (106)
T cd05521 75 WNARLYNTKGSVIYKYALILEKYIND 100 (106)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999988766553
No 37
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.69 E-value=2.4e-08 Score=102.24 Aligned_cols=83 Identities=16% Similarity=0.125 Sum_probs=71.6
Q ss_pred chhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHHHHHhhhhhcCCCchHHH
Q 000127 1017 DEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICTAYSDQSDLLQ 1096 (2127)
Q Consensus 1017 d~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRLVWsN~~tyNgdgSEVve 1096 (2127)
....+|..||...- ...+++++|..+|++||||+||+.|+..|.|. +.+.|.+|++++|+|+..||+.++.+..
T Consensus 17 p~~~~~~~~v~~~~-----~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~-s~~ef~~Dv~LI~~N~~~yNg~~s~~~~ 90 (109)
T cd05492 17 PPDTTNRAIVLNKR-----GKATKLPKRRRLIHTHLDVADIQEKINSEKYT-SLEEFKADALLLLHNTAIFHGADSEQYD 90 (109)
T ss_pred cccccccccccccC-----chhccCCCHHHHhCCCCcHHHHHHHHHcCCCC-CHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 44688999987522 23446889999999999999999999999999 6888999999999999999999999999
Q ss_pred HHHHhhchh
Q 000127 1097 LAGKLCQNF 1105 (2127)
Q Consensus 1097 LAekLSQiF 1105 (2127)
+|..|.+..
T Consensus 91 ~A~~l~~d~ 99 (109)
T cd05492 91 AARWLYRDT 99 (109)
T ss_pred HHHHHHHHH
Confidence 999886543
No 38
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.69 E-value=4.5e-08 Score=98.88 Aligned_cols=94 Identities=18% Similarity=0.163 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHh---cchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHH
Q 000127 1003 MKQCRKVLRCAAA---ADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVRE 1079 (2127)
Q Consensus 1003 mKrCr~VLkeLl~---sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRL 1079 (2127)
|+.+-..++.+.. ..-+++|.++++. ..+++|..+|++||||++|+.|+..+.|. +...|..|+++
T Consensus 6 ~~~i~~~v~~~~d~~g~~l~~~F~~~p~~----------~~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~-s~~~f~~D~~l 74 (104)
T cd05522 6 IKNILKGLRKERDENGRLLTLHFEKLPDK----------AREPEYYQEISNPISLDDIKKKVKRRKYK-SFDQFLNDLNL 74 (104)
T ss_pred HHHHHHHHHHHhCcCCCcccHHHhcCCCc----------cccCcHHHHhCCCcCHHHHHHHHccCCCC-CHHHHHHHHHH
Confidence 4443444444442 2245666666544 35789999999999999999999999998 67789999999
Q ss_pred HHHhhhhhcCCCchHHHHHHHhhchhhh
Q 000127 1080 VWHHICTAYSDQSDLLQLAGKLCQNFEV 1107 (2127)
Q Consensus 1080 VWsN~~tyNgdgSEVveLAekLSQiFES 1107 (2127)
+|.|+..||+.++.+..+|..|.+.|+.
T Consensus 75 i~~Na~~yn~~~s~i~~~A~~l~~~f~~ 102 (104)
T cd05522 75 MFENAKLYNENDSQEYKDAVLLEKEARL 102 (104)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887764
No 39
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.57 E-value=1.7e-08 Score=125.18 Aligned_cols=50 Identities=40% Similarity=1.056 Sum_probs=46.9
Q ss_pred cccccccCCCCCCCeEEecCCCCC-CcccccCCCCCCCCCCCccCcccccC
Q 000127 1155 GVCKVCGIDKDDDNVLLCDTCDSG-YHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1155 d~CkVCg~~~d~geLLlCD~CD~a-YHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
..|.+|...+..+.||+||.|+.+ ||+|||+|+|.++|.+.|||+.|+--
T Consensus 216 ~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL 266 (1134)
T KOG0825|consen 216 VKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSLL 266 (1134)
T ss_pred ccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchhh
Confidence 469999998889999999999999 99999999999999999999999755
No 40
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=98.50 E-value=8.5e-08 Score=129.03 Aligned_cols=93 Identities=22% Similarity=0.347 Sum_probs=82.6
Q ss_pred HHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHHHHHhhh
Q 000127 1006 CRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHIC 1085 (2127)
Q Consensus 1006 Cr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRLVWsN~~ 1085 (2127)
|..||.+|..++.+|+|..||.... .+||.+||++||||.||.-++..|.|. .++.|+.||++||.||.
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~~----------vp~Y~~IIk~Pmdl~tir~k~~~~~Y~-~~eef~~Di~lvf~Nc~ 1374 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPKE----------VPDYYDIIKKPMDLSTIREKLSKGIYP-SPEEFATDIELVFDNCE 1374 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChhh----------cccHHHHhcChhHHHHHHHHHhcccCC-CHHHHHHHHHHHHHHHH
Confidence 8999999999999999999998854 569999999999999999999999999 67779999999999999
Q ss_pred hhcCCCchHHHHHHHhhchhhhhhH
Q 000127 1086 TAYSDQSDLLQLAGKLCQNFEVLYK 1110 (2127)
Q Consensus 1086 tyNgdgSEVveLAekLSQiFESrYk 1110 (2127)
+||.+ ++|......|..-|+.+|.
T Consensus 1375 ~yN~~-s~i~~ag~~l~~ff~~~~~ 1398 (1404)
T KOG1245|consen 1375 TYNED-SEIGRAGTCLRRFFHKRWR 1398 (1404)
T ss_pred Hhccc-hhhhhhcchHHHHHHHHHH
Confidence 99999 8887766666666665443
No 41
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.37 E-value=1e-07 Score=84.04 Aligned_cols=48 Identities=44% Similarity=1.234 Sum_probs=43.0
Q ss_pred ccccccCCCCCCCeEEecCCCCCCcccccCCCCC--CCCCCCccCccccc
Q 000127 1156 VCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLT--RVPEGNWYCPPCLS 1203 (2127)
Q Consensus 1156 ~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL~--~VPeGdW~CP~Cv~ 1203 (2127)
+|.+|++..+.+.||.||.|+..||+.|++|++. .++.+.|+|+.|..
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 4889999888999999999999999999999987 56667999999964
No 42
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.36 E-value=1.2e-07 Score=117.39 Aligned_cols=51 Identities=33% Similarity=0.970 Sum_probs=46.3
Q ss_pred ccccccccCCCCCCCeEEecCCCCCCcccccCCC--CCCCCCCCccCcccccC
Q 000127 1154 EGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPP--LTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1154 dd~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PP--L~~VPeGdW~CP~Cv~~ 1204 (2127)
.++|..|++...-..++|||+|++.||++||+|| ...+|.|.|||+.|.+.
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k 305 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIK 305 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeee
Confidence 4589999987766778999999999999999999 58899999999999987
No 43
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.27 E-value=2.4e-07 Score=106.12 Aligned_cols=59 Identities=31% Similarity=0.799 Sum_probs=48.9
Q ss_pred ccCCCCCCcCcc---ccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCc-ccccC
Q 000127 1144 ASEIPKAPWDEG---VCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCP-PCLSG 1204 (2127)
Q Consensus 1144 ~s~lPr~~w~dd---~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP-~Cv~~ 1204 (2127)
+..+..++|.|. .|.+|++...++++++||.||++||++|++ |..+|.|.|+|. .|...
T Consensus 301 v~~~KTY~W~C~~C~lC~IC~~P~~E~E~~FCD~CDRG~HT~CVG--L~~lP~G~WICD~~C~~~ 363 (381)
T KOG1512|consen 301 VGQYKTYFWKCSSCELCRICLGPVIESEHLFCDVCDRGPHTLCVG--LQDLPRGEWICDMRCREA 363 (381)
T ss_pred HhHHhhcchhhcccHhhhccCCcccchheeccccccCCCCccccc--cccccCccchhhhHHHHh
Confidence 344556888765 566778888899999999999999999999 999999999998 46544
No 44
>smart00541 FYRN "FY-rich" domain, N-terminal region. is sometimes closely juxtaposed with the C-terminal region (FYRC), but sometimes is far distant. Unknown function, but occurs frequently in chromatin-associated proteins.
Probab=98.26 E-value=5.7e-07 Score=79.37 Aligned_cols=37 Identities=30% Similarity=0.527 Sum_probs=34.0
Q ss_pred ccCCCCCCCCcceeeccccc-----ccccCCCccEEEEEecc
Q 000127 309 VDPRPSYHNSSQIWPVGYKS-----SWHDKVTGSLFVCDVSD 345 (2127)
Q Consensus 309 i~~r~~yh~~~~i~pvgyks-----~~~~~~~~~l~~c~v~d 345 (2127)
+.+|+.||++++|||+||+| |.+||...+.|+|.|.|
T Consensus 3 ~~~~~~fh~~~~IyP~Gy~s~R~y~S~~dp~~~c~Y~c~i~~ 44 (44)
T smart00541 3 PIQGKLFHSEDAIFPVGYKSTRKYWSVKDPNRRCNYSCVIDE 44 (44)
T ss_pred cccCCCcccCCEEecCCEEEEEEEecccCCCCEEEEEEEECC
Confidence 45899999999999999999 88999999999998865
No 45
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=98.13 E-value=5.1e-07 Score=118.56 Aligned_cols=166 Identities=21% Similarity=0.410 Sum_probs=110.5
Q ss_pred cccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCcccccCCCC----CCccCCCCCcccccccccccchh
Q 000127 1155 GVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSGNCK----NKYMSQVPHVSSRIPKRRHQGEF 1230 (2127)
Q Consensus 1155 d~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~~c~----~~~~~Qe~~~~sq~~rKy~~GE~ 1230 (2127)
..|..|.+.... .+++|+.|...||.+|+.||+..+|.|+|.|+.|....+. ..++.+....++...+..+...+
T Consensus 156 ~~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~yt~~~f~~~~~~~ 234 (904)
T KOG1246|consen 156 PQCNTCSKGKEE-KLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPTPESKPNYKFGFEQGSREYTLPKFEEYADNF 234 (904)
T ss_pred hhhhccccCCCc-cceecccccCcccccccCCCCCcCCcCcccCCcccccccCCcccccCcCCCCCccccchhhhHhhhh
Confidence 479999988777 5559999999999999999999999999999999887433 23344444445555554444444
Q ss_pred hhhhhhhhhhhh--hccccccccccChhHHHH-HHHHhhhhccchhhhh-hhhhhhhhhhh-hhHHHHHhhhHHHhhhhc
Q 000127 1231 TCRILEEVFHLA--ATMEMRDYWDYSDKERIF-LLKFLCDELLNSTNIR-EHLERCASVSV-DLQQKIRSLSLEWRNLKF 1305 (2127)
Q Consensus 1231 ~~~f~ee~~hLa--id~lEKEFW~LSv~ERif-LLKfLcDE~LSStLIR-ehLEqcvdlat-ELrKKyREl~rE~KNLp~ 1305 (2127)
...|+....+.. ++..|++||+.+...-.. ...|..|. .+...- ..-..+..... ..+++|+..+||++++|.
T Consensus 235 ~~~~~~~~~~~~~~~~~vE~e~w~~v~~~~~~~~~~~g~d~--~~~~~~s~~~~~~~~~~~~~~~~~y~~s~wnL~~i~~ 312 (904)
T KOG1246|consen 235 KKDYFPKSKNSPDSTEDVEKEFWRLVASNLESVEVLYGADL--STKEFGSGFPKSASGPLLGSEAEKYSNSGWNLNNIPR 312 (904)
T ss_pred hccccccccCCCCchHHHHHHHHHhhcccccceeeeeccch--hhccccccccccCCCCCCCcchhhhccCccccccccc
Confidence 555555554443 458899999996543111 11222221 111111 01011111111 567899999999999999
Q ss_pred HHHHhhhhhhhccccccCC
Q 000127 1306 REEILAGKVARDKASVLSG 1324 (2127)
Q Consensus 1306 ~~eSLl~~i~k~~~s~~~g 1324 (2127)
.+++++.+.. .++++|+.
T Consensus 313 ~~~svl~~~~-~di~g~~~ 330 (904)
T KOG1246|consen 313 LEGSVLSHID-TDISGVTV 330 (904)
T ss_pred CCcccccccc-CCcCcccc
Confidence 9999999998 55777773
No 46
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=98.08 E-value=2.7e-06 Score=91.33 Aligned_cols=31 Identities=48% Similarity=1.187 Sum_probs=28.2
Q ss_pred CCcccccCCCCCCCCCCCccCcccccCCCCC
Q 000127 1178 GYHTYCLTPPLTRVPEGNWYCPPCLSGNCKN 1208 (2127)
Q Consensus 1178 aYHl~CL~PPL~~VPeGdW~CP~Cv~~~c~~ 1208 (2127)
+||++||+|||..+|+|+|+||.|.....+.
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~~~ 31 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEKSGQ 31 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCCCCC
Confidence 6999999999999999999999999885553
No 47
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=98.06 E-value=8.2e-06 Score=97.89 Aligned_cols=109 Identities=17% Similarity=0.232 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHH------hcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHh
Q 000127 1002 IMKQCRKVLRCAA------AADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLE 1075 (2127)
Q Consensus 1002 ImKrCr~VLkeLl------~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAE 1075 (2127)
+-++|..++..+. ....+++|..+++. .-.++|+.||+.||||++|.+++..+.|. +.+.|.+
T Consensus 143 ~~~~~~~i~~~~~~~~~~~~~~~s~~F~~~p~k----------~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~-s~eef~~ 211 (371)
T COG5076 143 LYADNKAIAKFKKQLFLRDGRFLSSIFLGLPSK----------REYPDYYEIIKSPMDLLTIQKKLKNGRYK-SFEEFVS 211 (371)
T ss_pred HHHHHHHHHHHHHHhhcccccccccccccCCcc----------ccCCChheeecchhhHHHHHHHHHhhhhh-hHHHHHH
Confidence 6677877777766 33334444444443 34679999999999999999999999999 7888999
Q ss_pred hHHHHHHhhhhhcCCCchHHHHHHHhhchhhhhhHHhhhhhhhccc
Q 000127 1076 DVREVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVLTLVQKFA 1121 (2127)
Q Consensus 1076 DVRLVWsN~~tyNgdgSEVveLAekLSQiFESrYkKqVLr~vQk~~ 1121 (2127)
|..+||.||+.||++++.|...|..|...|..++..+.....+...
T Consensus 212 D~~lM~~N~~~yN~~~s~v~~~a~~l~~~~~~~i~~~~~~~~~~~~ 257 (371)
T COG5076 212 DLNLMFDNCKLYNGPDSSVYVDAKELEKYFLKLIEEIPEEMLELSI 257 (371)
T ss_pred HHHHHHHhhhhccCCCcchhhhhHHHHHHHHHHHHhccccchhhcc
Confidence 9999999999999999999999999999999999988876655433
No 48
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF02791 DDT: DDT domain; InterPro: IPR004022 This domain is predicted to be a DNA binding domain. The DDT domain is named after (DNA binding homeobox and Different Transcription factors). It is found in foetal Alzheimer antigen and several hypothetical and uncharacterised proteins.
Probab=97.84 E-value=2.8e-05 Score=72.33 Aligned_cols=58 Identities=36% Similarity=0.622 Sum_probs=50.3
Q ss_pred hhhhhHHHHHHHHHHhHhhcCCCCCCCHHHHHHHHccCCCCcccCCCCccccccccccchhhhhhhHHHHHHHhhccccc
Q 000127 658 ELIGDVIQSWELLWRFSEVLGLEEPLSFKELEEELRNGSAFTLRSSSTSTVAQEIGQAFIAEEMESLREAAHVRLASNTS 737 (2127)
Q Consensus 658 ~LvGd~lQ~wE~l~RF~eilgl~ep~s~eelE~eLi~~~~~s~~~~~~~~vs~~~~~~~~~~e~~~~~e~~~~~~a~~t~ 737 (2127)
+.+||.|+|||||..|+++|+|+. +|++++|+-|.+.. +
T Consensus 2 ~~~~~~L~v~~Fl~~F~~~L~L~~-ftlddf~~AL~~~~---~------------------------------------- 40 (61)
T PF02791_consen 2 EAFGDLLMVWEFLNTFGEVLGLSP-FTLDDFEQALLCND---P------------------------------------- 40 (61)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCc-CCHHHHHHHHcCCC---c-------------------------------------
Confidence 679999999999999999999998 79999999998832 0
Q ss_pred cCcccchhhhhHHHHHHHHHHHH
Q 000127 738 SGHANVGLANVLCSLLILLLGEL 760 (2127)
Q Consensus 738 ~~~~gv~l~~~h~~LlkvL~~eL 760 (2127)
. ..|.++|++||+.|+.+.
T Consensus 41 ---~-~ll~ei~~~LL~~l~~~~ 59 (61)
T PF02791_consen 41 ---S-GLLAEIHCALLKALLADE 59 (61)
T ss_pred ---c-hhHHHHHHHHHHHHHhcc
Confidence 0 178999999999998764
No 50
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=97.80 E-value=6.3e-05 Score=77.87 Aligned_cols=104 Identities=16% Similarity=0.113 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHHHHH
Q 000127 1003 MKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWH 1082 (2127)
Q Consensus 1003 mKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRLVWs 1082 (2127)
-+.-..++..++.+... -+.++...++.+-.... .|..+|++||+|..|+.|+..|.|. +.+.|.+|+.++|.
T Consensus 5 q~~l~~l~~~V~~~~D~--~Gr~~s~~f~~LP~~~~----~~~~~ik~Pi~l~~Ik~ki~~~~Y~-~ld~~~~D~~lmf~ 77 (110)
T cd05526 5 QELLATLFVSVMNHQDE--EGRCYSDSLAELPELAV----DGVGPKKIPLTLDIIKRNVDKGRYR-RLDKFQEDMFEVLE 77 (110)
T ss_pred HHHHHHHHHHHHhccCC--CCCCchHHHHHCCCccc----CchhhhcCCccHHHHHHHHHcCCcC-cHHHHHHHHHHHHH
Confidence 34455667777744432 25566666655444222 2346899999999999999999999 78889999999999
Q ss_pred hhhhhcCCCchHHHHHHHhhchhhhhhHHhh
Q 000127 1083 HICTAYSDQSDLLQLAGKLCQNFEVLYKKEV 1113 (2127)
Q Consensus 1083 N~~tyNgdgSEVveLAekLSQiFESrYkKqV 1113 (2127)
|+.+||..++.|...|..|+..|...+.+.+
T Consensus 78 NAr~yN~~~S~iy~dA~eLq~~f~~~rd~~~ 108 (110)
T cd05526 78 RARRLSRTDSEIYEDAVELQQFFIKIRDELC 108 (110)
T ss_pred HHHHhCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998887776654
No 51
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.71 E-value=1.4e-05 Score=99.97 Aligned_cols=56 Identities=43% Similarity=1.142 Sum_probs=47.8
Q ss_pred cCcc---ccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCcccc-cCCCC
Q 000127 1152 WDEG---VCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCL-SGNCK 1207 (2127)
Q Consensus 1152 w~dd---~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv-~~~c~ 1207 (2127)
|.|. +|..|+..+++.++++|+.||..||.||..|+++.||.|.|+|+.|. +..|.
T Consensus 63 WrC~~crvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~c~qc~ 122 (694)
T KOG4443|consen 63 WRCPSCRVCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTRCRQCD 122 (694)
T ss_pred cccCCceeeeeccccCCcccccccccccccccccccCCccccccCcccccHHHHhhhhcc
Confidence 5554 66677877789999999999999999999999999999999999995 34443
No 52
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=97.70 E-value=6.7e-06 Score=111.45 Aligned_cols=51 Identities=49% Similarity=1.236 Sum_probs=48.5
Q ss_pred cccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCcccccCC
Q 000127 1155 GVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSGN 1205 (2127)
Q Consensus 1155 d~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~~ 1205 (2127)
..|++|.+..+...|++||.|..+||++|++|.+..+|.|+|+||.|+...
T Consensus 1109 ~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1109 ALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred hhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 479999999999999999999999999999999999999999999999873
No 53
>smart00571 DDT domain in different transcription and chromosome remodeling factors.
Probab=97.61 E-value=0.0001 Score=69.22 Aligned_cols=37 Identities=30% Similarity=0.583 Sum_probs=33.5
Q ss_pred hhhhhhHHHHHHHHHHhHhhcCCCCCCC--HHHHHHHHcc
Q 000127 657 IELIGDVIQSWELLWRFSEVLGLEEPLS--FKELEEELRN 694 (2127)
Q Consensus 657 ~~LvGd~lQ~wE~l~RF~eilgl~ep~s--~eelE~eLi~ 694 (2127)
.+.+||+|||||||..|+++|||.+ ++ ++++++.|.+
T Consensus 1 ~~~~~d~l~V~eFl~~F~~~L~L~~-f~~~l~~f~~Al~~ 39 (63)
T smart00571 1 NEAFGDLLMVYEFLRSFGKVLGLSP-FRATLEDFIAALKC 39 (63)
T ss_pred CcHHHHHHHHHHHHHHHHHHhCCCc-chhhHHHHHHHHhc
Confidence 3789999999999999999999976 88 9999988876
No 54
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.58 E-value=3.2e-05 Score=90.16 Aligned_cols=47 Identities=34% Similarity=0.935 Sum_probs=40.1
Q ss_pred cccccccCCCCCCCeEEecC--CC-CCCcccccCCCCCCCCCCCccCcccccCC
Q 000127 1155 GVCKVCGIDKDDDNVLLCDT--CD-SGYHTYCLTPPLTRVPEGNWYCPPCLSGN 1205 (2127)
Q Consensus 1155 d~CkVCg~~~d~geLLlCD~--CD-~aYHl~CL~PPL~~VPeGdW~CP~Cv~~~ 1205 (2127)
.+|. |. ....++|+-||. |+ .+||+.|++ |...|.|.||||.|....
T Consensus 220 ~yC~-Cn-qvsyg~Mi~CDn~~C~~eWFH~~CVG--L~~~PkgkWyC~~C~~~~ 269 (274)
T KOG1973|consen 220 TYCI-CN-QVSYGKMIGCDNPGCPIEWFHFTCVG--LKTKPKGKWYCPRCKAEN 269 (274)
T ss_pred EEEE-ec-ccccccccccCCCCCCcceEEEeccc--cccCCCCcccchhhhhhh
Confidence 3563 33 357899999998 99 999999999 999999999999998763
No 55
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=97.41 E-value=4.3e-05 Score=92.89 Aligned_cols=48 Identities=44% Similarity=0.992 Sum_probs=44.1
Q ss_pred cccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCC----ccCcccc
Q 000127 1155 GVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGN----WYCPPCL 1202 (2127)
Q Consensus 1155 d~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL~~VPeGd----W~CP~Cv 1202 (2127)
..|.+|.+.++...++.||.|..-||+.||.|||+.+|+.. |.|..|-
T Consensus 545 ysCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECd 596 (707)
T KOG0957|consen 545 YSCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECD 596 (707)
T ss_pred eeeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeecccc
Confidence 36999998889999999999999999999999999999874 9999993
No 56
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=97.39 E-value=0.00014 Score=94.81 Aligned_cols=101 Identities=26% Similarity=0.501 Sum_probs=69.2
Q ss_pred ccccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCcccccCCCC------------CCccCCCCCccccc
Q 000127 1154 EGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSGNCK------------NKYMSQVPHVSSRI 1221 (2127)
Q Consensus 1154 dd~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~~c~------------~~~~~Qe~~~~sq~ 1221 (2127)
++.|++|. +.+.++||..|++.||+-|..||+..+|+..|-|--|...... ..+.+.+..++...
T Consensus 344 ddhcrf~~---d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~hkvngvvd~vl~~~K~~~~iR~~~iG~dr~ 420 (1414)
T KOG1473|consen 344 DDHCRFCH---DLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIHKVNGVVDCVLPPSKNVDSIRHTPIGRDRY 420 (1414)
T ss_pred cccccccC---cccceeecccCCceEEeeecCCccccCCCccchhhhhhhhccCcccccccChhhcccceeccCCCcCcc
Confidence 36799996 7899999999999999999999999999999999999743211 11123333344455
Q ss_pred ccccccchhhhhhhhhhhhhhhccccccccccChhHHHH-HHHHh
Q 000127 1222 PKRRHQGEFTCRILEEVFHLAATMEMRDYWDYSDKERIF-LLKFL 1265 (2127)
Q Consensus 1222 ~rKy~~GE~~~~f~ee~~hLaid~lEKEFW~LSv~ERif-LLKfL 1265 (2127)
.++|++--..... ..+.+...|+++..=+.+ +|+.|
T Consensus 421 gr~ywfi~rrl~I--------e~~det~l~yysT~pqly~ll~cL 457 (1414)
T KOG1473|consen 421 GRKYWFISRRLRI--------EGMDETLLWYYSTCPQLYHLLRCL 457 (1414)
T ss_pred ccchhceeeeeEE--------ecCCCcEEEEecCcHHHHHHHHHh
Confidence 5666653322222 246788899998654453 33444
No 57
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=97.38 E-value=8.4e-05 Score=76.97 Aligned_cols=78 Identities=10% Similarity=0.100 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhccccc------CCChhhhHhh
Q 000127 1003 MKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAY------GGSHEAFLED 1076 (2127)
Q Consensus 1003 mKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y------~GSpE~FAED 1076 (2127)
+..|..+|+.+..+..+|+|..||++. ..+.++|+++|++||||+||..++....+ ...-..+..+
T Consensus 5 ~~~~l~~l~~~~~~~~~~pF~~PVd~~--------~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~ 76 (114)
T cd05494 5 LERVLRELKRHRRNEDAWPFLEPVNPP--------RRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADK 76 (114)
T ss_pred HHHHHHHHHHhhhCCCCCCcCCCCCch--------hcCCCChhhhcCCCCChHHHHHHHHcccccccccccccccccccc
Confidence 677888888888888999999999883 45688999999999999999998887533 1122334555
Q ss_pred HHHHHHhhhhhc
Q 000127 1077 VREVWHHICTAY 1088 (2127)
Q Consensus 1077 VRLVWsN~~tyN 1088 (2127)
+...|.++..++
T Consensus 77 ~~~~~~~~~~~~ 88 (114)
T cd05494 77 QIDDEGRRSPSN 88 (114)
T ss_pred ccccccccCccc
Confidence 555565544443
No 58
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.36 E-value=6.1e-05 Score=96.42 Aligned_cols=49 Identities=41% Similarity=1.101 Sum_probs=44.6
Q ss_pred cccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCcccccCCC
Q 000127 1155 GVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSGNC 1206 (2127)
Q Consensus 1155 d~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~~c 1206 (2127)
..|++|+ +++.+|+||.|+..||.+|++||+..+|.++|.|+.|.+...
T Consensus 48 e~c~ic~---~~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p~~ 96 (696)
T KOG0383|consen 48 EACRICA---DGGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCPKN 96 (696)
T ss_pred hhhhhhc---CCCcEEEeccccHHHHHHccCCCCCcCCccceeeeeeccCCC
Confidence 4799996 889999999999999999999999999999999999966544
No 59
>PF15614 WHIM3: WSTF, HB1, Itc1p, MBD9 motif 3
Probab=97.36 E-value=0.00017 Score=64.71 Aligned_cols=37 Identities=24% Similarity=0.445 Sum_probs=34.4
Q ss_pred ceEecChHHHHHHHHhh-cCCChhhHHHHHHHHHHhhh
Q 000127 1608 WFSYQSDTEIEELIQWL-SDSDPRDKELAESILRWTKI 1644 (2127)
Q Consensus 1608 W~~YqsdeEIeeLi~WL-~d~~~RE~eLKeSIl~W~k~ 1644 (2127)
|+.|.+.++|++|+.|| ++.+.||++|++.+..-+|.
T Consensus 1 W~~~~~~e~ld~L~~aL~~prG~RE~~L~~~L~~~~k~ 38 (46)
T PF15614_consen 1 WGYYDDPEELDELLKALENPRGKRESKLKKELDKHRKG 38 (46)
T ss_pred CccccCHHHHHHHHHHHcCcccHhHHHHHHHHHHHhcc
Confidence 99999999999999999 99999999999999876643
No 60
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=96.87 E-value=0.00096 Score=84.74 Aligned_cols=50 Identities=32% Similarity=0.941 Sum_probs=43.8
Q ss_pred CccccccccCCC--CCCCeEEecCCCCCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1153 DEGVCKVCGIDK--DDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1153 ~dd~CkVCg~~~--d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
++..|.||...+ ...+|++||.|...-|+.|.+ +.++|.|.|.|..|.-+
T Consensus 270 edviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyG--Ile~p~gpWlCr~Calg 321 (893)
T KOG0954|consen 270 EDVICDVCRSPDSEEANEMVFCDKCNICVHQACYG--ILEVPEGPWLCRTCALG 321 (893)
T ss_pred ccceeceecCCCccccceeEEeccchhHHHHhhhc--eeecCCCCeeehhcccc
Confidence 456899997653 467999999999999999999 89999999999999755
No 61
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=96.80 E-value=0.00064 Score=90.36 Aligned_cols=50 Identities=30% Similarity=0.873 Sum_probs=43.0
Q ss_pred CccccccccCCCC--CCCeEEecCCCCCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1153 DEGVCKVCGIDKD--DDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1153 ~dd~CkVCg~~~d--~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
.+..|.+|....- ...+|+||.|+.++|++|.+ ..-+|+|.|+|..|...
T Consensus 218 ~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cyg--i~~ipeg~WlCr~Cl~s 269 (1051)
T KOG0955|consen 218 EDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYG--IPFIPEGQWLCRRCLQS 269 (1051)
T ss_pred CCccceeecccccCCCceEEEcCCCcchhhhhccC--CCCCCCCcEeehhhccC
Confidence 3568999975543 37899999999999999999 56899999999999877
No 62
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=96.72 E-value=0.0009 Score=86.10 Aligned_cols=76 Identities=18% Similarity=0.330 Sum_probs=67.3
Q ss_pred HHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHHHHHhhhh
Q 000127 1007 RKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICT 1086 (2127)
Q Consensus 1007 r~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRLVWsN~~t 1086 (2127)
..+|..+-.+..+|+|.+||+.+ +.++|+.+|.+||||.|+..++..+.|. ....|.+|+..+|.||.-
T Consensus 612 ~~il~~l~~h~~awPf~~Pv~~~----------e~pdyy~~I~~pmDl~tM~~~l~~~~y~-~~~~f~ad~~~vf~ncr~ 680 (720)
T KOG1472|consen 612 QNILDQLQNHGDAWPFLKPVNKK----------EVPDYYDVIKHPMDLRTMQNRLKDNQYT-EVELFMADVVRVFANCRM 680 (720)
T ss_pred HhHHhhhhcCCccCCccCccccc----------cCCcHHHHhcccccHHHHhhhccccchh-hHHHHHHHHHHHHhhhhc
Confidence 34667777999999999999873 5779999999999999999999999999 577799999999999999
Q ss_pred hcCCCch
Q 000127 1087 AYSDQSD 1093 (2127)
Q Consensus 1087 yNgdgSE 1093 (2127)
||+....
T Consensus 681 yn~~~~~ 687 (720)
T KOG1472|consen 681 YNGSDTQ 687 (720)
T ss_pred cCCccch
Confidence 9987654
No 63
>PF01429 MBD: Methyl-CpG binding domain; InterPro: IPR001739 Methylation at CpG dinucleotide, the most common DNA modification in eukaryotes, has been correlated with gene silencing associated with various phenomena such as genomic imprinting, transposon and chromosome X inactivation, differentiation, and cancer. Effects of DNA methylation are mediated through proteins which bind to symmetrically methylated CpGs. Such proteins contain a specific domain of ~70 residues, the methyl-CpG-binding domain (MBD), which is linked to additional domains associated with chromatin, such as the bromodomain, the AT hook motif,the SET domain, or the PHD finger. MBD-containing proteins appear to act as structural proteins, which recruit a variety of histone deacetylase (HDAC) complexes and chromatin remodelling factors, leading to chromatin compaction and, consequently, to transcriptional repression. The MBD of MeCP2, MBD1, MBD2, MBD4 and BAZ2 mediates binding to DNA, in case of MeCP2, MBD1 and MBD2 preferentially to methylated CpG. In case of human MBD3 and SETDB1 the MBD has been shown to mediate protein-protein interactions [, ]. The MBD folds into an alpha/beta sandwich structure comprising a layer of twisted beta sheet, backed by another layer formed by the alpha1 helix and a hairpin loop at the C terminus. These layers are both amphipathic, with the alpha1 helix and the beta sheet lying parallel and the hydrophobic faces tightly packed against each other. The beta sheet is composed of two long inner strands (beta2 and beta3) sandwiched by two shorter outer strands (beta1 and beta4) [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 2KY8_A 1UB1_A 1D9N_A 1IG4_A 1QK9_A 3C2I_A.
Probab=96.61 E-value=0.0009 Score=65.08 Aligned_cols=41 Identities=22% Similarity=0.250 Sum_probs=34.9
Q ss_pred ccccccC-----CCcC-ceeeEEEEecCCceeccccccccccccccc
Q 000127 159 ERVWASG-----NSIP-RTSYQNYYAVNGNRFDSMFDVPCHLGLVSN 199 (2127)
Q Consensus 159 e~~w~~~-----~~~~-~~~~~~y~~~~g~~f~s~~~~a~~lgl~~~ 199 (2127)
..||+.+ ++-+ +..+++|++|.|++|.|+.||++||+...+
T Consensus 12 p~GW~re~~~R~~g~~~~~~dv~Y~sP~Gk~~RS~~eV~~yL~~~~~ 58 (77)
T PF01429_consen 12 PDGWKREVVVRKSGSSAGKKDVYYYSPCGKRFRSKKEVVRYLKENPS 58 (77)
T ss_dssp TTT-EEEEEESSSSTTTTSEEEEEEETTSEEESSHHHHHHHHTTSS-
T ss_pred CCCCEEEEEEecCCCcCCceEEEEECCCCCEEeCHHHHHHHHHhCCC
Confidence 6899988 3444 789999999999999999999999999874
No 64
>PF05965 FYRC: F/Y rich C-terminus; InterPro: IPR003889 The "FY-rich" domain C-terminal region is sometimes closely juxtaposed with the N-terminal region (IPR003888 from INTERPRO), but sometimes is far distant. It is of unknown function, but occurs frequently in chromatin-associated proteins like trithorax and its homologues.; GO: 0005634 nucleus; PDB: 2WZO_A.
Probab=96.60 E-value=0.0013 Score=64.74 Aligned_cols=74 Identities=28% Similarity=0.477 Sum_probs=46.1
Q ss_pred CcccceEEeccCchhHHHHHHHHHHHHHHHHHHhcCcEEEEecccccccccccccccccccccccchHhhhhcCCCCccc
Q 000127 459 DDIGEFLVEGRSSASVWRMVSQTLVHACRKIYEQTGVCKFRCRHDVFKIWSSYFVSVSEEATESSDSLSKFCCLSGPVNI 538 (2127)
Q Consensus 459 d~igef~~e~~Ssss~W~~vs~~~~~ac~~~~k~~g~~~f~c~h~~~~~~~~~~~~~~~~~~~~~~sl~kfc~~~g~~~i 538 (2127)
+|-.++.++|.|...+|++|-+++-.+...- + + ....+...+||
T Consensus 11 ~d~p~~~~~g~s~~~~W~~i~~~v~~~r~~~----~----------------~-------------~~~~~~~isG~--- 54 (86)
T PF05965_consen 11 EDDPGEVFEGSSPTEAWSEILERVNEARKQS----G----------------L-------------LKLPPNSISGP--- 54 (86)
T ss_dssp TT-GGG-EEESSHHHHHHHHHHHHHHHHT----------------------------------------TT----HH---
T ss_pred CCCCCCEEEeCCHHHHHHHHHHHHHHHHhhc----c----------------c-------------cccCCCCCCHh---
Confidence 3456799999999999999998887744321 1 0 00111122233
Q ss_pred CcccccchhHHHHHHHHHHhhccCcccccHHHHHHHHHhCCcccccccccccc
Q 000127 539 PHLIRSNDELETSCKALVKWLDQDRFGLDVEFVQEIVEQLPRVRVCAEYTFLD 591 (2127)
Q Consensus 539 p~~i~~~~~~~~~~~~l~~wl~qdrfgld~efvqe~~e~lp~~~~c~~y~~l~ 591 (2127)
+-|||...-|+.+||+|||++.|++|+|=-
T Consensus 55 -----------------------~~FGls~p~V~~lie~Lp~a~~c~~Y~f~~ 84 (86)
T PF05965_consen 55 -----------------------EMFGLSNPAVQRLIESLPGADKCSNYKFRY 84 (86)
T ss_dssp -----------------------HHHSTTSHHHHHHHTTSTTGGG-TT-----
T ss_pred -----------------------HhcCCCCHHHHHHHHhCCCcchhhcCCccc
Confidence 569999999999999999999999997743
No 65
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=96.56 E-value=0.0017 Score=68.35 Aligned_cols=42 Identities=26% Similarity=0.372 Sum_probs=38.2
Q ss_pred ccCCchhhHHhhhcccccCCChhhhHhhHHHHHHhhhhhcCCC
Q 000127 1049 SRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICTAYSDQ 1091 (2127)
Q Consensus 1049 kRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRLVWsN~~tyNgdg 1091 (2127)
=-||||.||+.|+.+|+|. .+..|.+||+++|.||..||+..
T Consensus 62 ~y~MDL~tIe~RL~ng~Y~-tp~~F~~DiklI~~Nc~~ynd~d 103 (119)
T cd05491 62 FYNMDLDTIEERLWNGYYA-TPKDFLKDIKRIVRDAKTIGDRE 103 (119)
T ss_pred EeccCHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHHHhCCHH
Confidence 3479999999999999999 78889999999999999999753
No 66
>smart00542 FYRC "FY-rich" domain, C-terminal region. is sometimes closely juxtaposed with the N-terminal region (FYRN), but sometimes is far distant. Unknown function, but occurs frequently in chromatin-associated proteins.
Probab=96.53 E-value=0.0033 Score=62.57 Aligned_cols=73 Identities=30% Similarity=0.526 Sum_probs=56.0
Q ss_pred ceEEeccCchhHHHHHHHHHHHHHHHHHHhcCcEEEEecccccccccccccccccccccccchHhhhhcCCCCcccCccc
Q 000127 463 EFLVEGRSSASVWRMVSQTLVHACRKIYEQTGVCKFRCRHDVFKIWSSYFVSVSEEATESSDSLSKFCCLSGPVNIPHLI 542 (2127)
Q Consensus 463 ef~~e~~Ssss~W~~vs~~~~~ac~~~~k~~g~~~f~c~h~~~~~~~~~~~~~~~~~~~~~~sl~kfc~~~g~~~ip~~i 542 (2127)
++.++|.|...+|++|=+++-++.++ .|-+.. .... -+||
T Consensus 11 ~~~~~~~S~~~~W~~vl~~v~~~r~~----~~~~~~-----------------------~~~~------isG~------- 50 (86)
T smart00542 11 DEVFKGESPEKCWEMVLERVQEARIV----ARLLQL-----------------------LPEG------VSGE------- 50 (86)
T ss_pred CCeEEeCCHHHHHHHHHHHHHHHHHH----cccCCC-----------------------CCCC------CCcH-------
Confidence 68999999999999999999887743 221111 0000 1244
Q ss_pred ccchhHHHHHHHHHHhhccCcccccHHHHHHHHHhCCccccccccccccccC
Q 000127 543 RSNDELETSCKALVKWLDQDRFGLDVEFVQEIVEQLPRVRVCAEYTFLDKRR 594 (2127)
Q Consensus 543 ~~~~~~~~~~~~l~~wl~qdrfgld~efvqe~~e~lp~~~~c~~y~~l~~r~ 594 (2127)
|-|||--..|+-+||+|||++.|.+|.|--+|.
T Consensus 51 -------------------~mFGls~p~V~~lie~Lpga~~C~~Y~~~~~~~ 83 (86)
T smart00542 51 -------------------DMFGLSSPAVVKLIEQLPGVHQCTNYWFRYHRS 83 (86)
T ss_pred -------------------HHhCCCcHHHHHHHHhCCCchhhhhhhhccCCC
Confidence 679999999999999999999999999976664
No 67
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=96.47 E-value=0.0012 Score=76.30 Aligned_cols=44 Identities=34% Similarity=0.994 Sum_probs=36.8
Q ss_pred ccccccCCCCCCCeEEecC--CC-CCCcccccCCCCCCCCCCCccCccccc
Q 000127 1156 VCKVCGIDKDDDNVLLCDT--CD-SGYHTYCLTPPLTRVPEGNWYCPPCLS 1203 (2127)
Q Consensus 1156 ~CkVCg~~~d~geLLlCD~--CD-~aYHl~CL~PPL~~VPeGdW~CP~Cv~ 1203 (2127)
+| -|++ ..-|+|+-||. |. -+||+.|++ |...|+|.|||+.|..
T Consensus 223 YC-fCqq-vSyGqMVaCDn~nCkrEWFH~~CVG--Lk~pPKG~WYC~eCk~ 269 (271)
T COG5034 223 YC-FCQQ-VSYGQMVACDNANCKREWFHLECVG--LKEPPKGKWYCPECKK 269 (271)
T ss_pred EE-Eecc-cccccceecCCCCCchhheeccccc--cCCCCCCcEeCHHhHh
Confidence 56 4653 25689999995 87 589999999 9999999999999974
No 68
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=96.34 E-value=0.0021 Score=79.61 Aligned_cols=50 Identities=32% Similarity=0.788 Sum_probs=40.1
Q ss_pred ccccccC--CCCCCCeEEecCCCCCCcccccCCCCCCC----CCCCccCcccccCC
Q 000127 1156 VCKVCGI--DKDDDNVLLCDTCDSGYHTYCLTPPLTRV----PEGNWYCPPCLSGN 1205 (2127)
Q Consensus 1156 ~CkVCg~--~~d~geLLlCD~CD~aYHl~CL~PPL~~V----PeGdW~CP~Cv~~~ 1205 (2127)
.|.+|+. .....+||.|+.|...||+.|..|+.+.. |...|||..|..+.
T Consensus 170 qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~ 225 (464)
T KOG4323|consen 170 QCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGP 225 (464)
T ss_pred eeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccch
Confidence 4777753 44566999999999999999999987554 44579999998773
No 69
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=95.99 E-value=0.0029 Score=77.76 Aligned_cols=50 Identities=28% Similarity=0.868 Sum_probs=42.7
Q ss_pred CccccccccCCCC--CCCeEEecCCCCCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1153 DEGVCKVCGIDKD--DDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1153 ~dd~CkVCg~~~d--~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
-|+.|.+|...+. .+.+++||+|+-+-|..|.+ +.-+|+|.|+|..|.-+
T Consensus 192 ~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYG--I~f~peG~WlCrkCi~~ 243 (669)
T COG5141 192 FDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYG--IQFLPEGFWLCRKCIYG 243 (669)
T ss_pred hhhhhHhccccccCCcceEEEecCcchhhhhhccc--ceecCcchhhhhhhccc
Confidence 3678999975443 46789999999999999999 66999999999999876
No 70
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=95.76 E-value=0.004 Score=78.86 Aligned_cols=47 Identities=32% Similarity=0.917 Sum_probs=39.2
Q ss_pred ccccccCCC--CCCCeEEecC--CCCCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1156 VCKVCGIDK--DDDNVLLCDT--CDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1156 ~CkVCg~~~--d~geLLlCD~--CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
-|.||.... .+..|+.||+ |.-+-|+.|+. +.+||.|.|||..|-.+
T Consensus 7 GCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYG--IvqVPtGpWfCrKCesq 57 (900)
T KOG0956|consen 7 GCCVCSDERGWAENPLVYCDGHNCSVAVHQACYG--IVQVPTGPWFCRKCESQ 57 (900)
T ss_pred ceeeecCcCCCccCceeeecCCCceeeeehhcce--eEecCCCchhhhhhhhh
Confidence 488995332 3578999995 99999999999 88999999999999544
No 71
>PF15613 WHIM2: WSTF, HB1, Itc1p, MBD9 motif 2
Probab=95.60 E-value=0.0097 Score=51.98 Aligned_cols=17 Identities=47% Similarity=0.925 Sum_probs=15.7
Q ss_pred hhhhcCCCCCCCeeEEe
Q 000127 1544 RKELLGRDSAGRLYWAF 1560 (2127)
Q Consensus 1544 RREfLG~Ds~GRlYW~f 1560 (2127)
|.+.||+|++|++||||
T Consensus 1 R~~pLG~DR~~NrYwwf 17 (38)
T PF15613_consen 1 RLKPLGKDRYGNRYWWF 17 (38)
T ss_pred CcccccccCCCceEEEE
Confidence 56789999999999999
No 72
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=95.41 E-value=0.056 Score=71.99 Aligned_cols=110 Identities=35% Similarity=0.504 Sum_probs=78.8
Q ss_pred CCCCCCCccc---cCChhhhhhHHHHHHHHHHhHhhcCCCCCCCHHHHHHHHccCCCCcccCCCCccccccccccchhhh
Q 000127 644 YFPPGKPLSS---KLPIELIGDVIQSWELLWRFSEVLGLEEPLSFKELEEELRNGSAFTLRSSSTSTVAQEIGQAFIAEE 720 (2127)
Q Consensus 644 ~~P~G~pl~~---~lP~~LvGd~lQ~wE~l~RF~eilgl~ep~s~eelE~eLi~~~~~s~~~~~~~~vs~~~~~~~~~~e 720 (2127)
+||.-=|=|+ -||.+-|=|+|-|.|+|.+|+-.|-|. ||.||.+=--|+.
T Consensus 173 vPpleLP~SSedi~IPne~Vm~alsIYevLRsF~~~Lris-PF~feDFcaAL~~-------------------------- 225 (1414)
T KOG1473|consen 173 VPPLELPESSEDIGIPNEHVMDALSIYEVLRSFSRQLRIS-PFRFEDFCAALIS-------------------------- 225 (1414)
T ss_pred CCCccCCCcccccCCcHHHHHHHHHHHHHHHhhcceEEeC-CccHHHHHHHHHh--------------------------
Confidence 5665555543 599999999999999999999999996 5999987555543
Q ss_pred hhhHHHHHHHhhccccccCcccchhhhhHHHHHHHHHHHHhhhhhhccCCCCCCcchhhhhhcccccccchhhhhccCCc
Q 000127 721 MESLREAAHVRLASNTSSGHANVGLANVLCSLLILLLGELQSKVAVLGDTSFDGTESKSRRRRKKDAENLMFAKKIMLDL 800 (2127)
Q Consensus 721 ~~~~~e~~~~~~a~~t~~~~~gv~l~~~h~~LlkvL~~eL~~kva~~~dpn~d~~Es~srrgRk~d~d~~~~~k~~k~~~ 800 (2127)
+ +.| -.|+++|.+|||-|++|+-.-= ..|-.-++| |.=| ++.
T Consensus 226 --------------~--~~s--sLlaeVHvaLLrA~lr~eD~~~-----Thfs~~d~K-------dsvn--------I~l 267 (1414)
T KOG1473|consen 226 --------------H--EQS--SLLAEVHVALLRALLREEDRLS-----THFSPLDSK-------DSVN--------IDL 267 (1414)
T ss_pred --------------c--Cch--hHHHHHHHHHHHHHhhhhhhcc-----cccCccccc-------ccee--------eee
Confidence 2 222 3799999999999999986432 233333332 2111 223
Q ss_pred cccCcCChHHHHHHhhhe
Q 000127 801 LPVNVLTWPELARRYLLT 818 (2127)
Q Consensus 801 LpiN~lTWPElarRYil~ 818 (2127)
-=|..|||||..|-|+-+
T Consensus 268 ~liD~lTWPevLrqY~ea 285 (1414)
T KOG1473|consen 268 YLIDTLTWPEVLRQYFEA 285 (1414)
T ss_pred ehhccccHHHHHHHHHHh
Confidence 346789999999999854
No 73
>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. The MBDs present in putative chromatin remodelling subunit, BAZ2A, and putative histone methyltransferase, CLLD8, represent two phylogenetically distinct groups within the MBD protein family.
Probab=95.34 E-value=0.0064 Score=57.11 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=34.5
Q ss_pred ccccccC-----CCcCceeeEEEEecCCceecccccccccccccc
Q 000127 159 ERVWASG-----NSIPRTSYQNYYAVNGNRFDSMFDVPCHLGLVS 198 (2127)
Q Consensus 159 e~~w~~~-----~~~~~~~~~~y~~~~g~~f~s~~~~a~~lgl~~ 198 (2127)
..||+.+ .+-....+++|++|.|++|+|+.||+.||.-++
T Consensus 7 p~GW~R~~~~r~~g~~~k~dv~Y~sP~Gk~~Rs~~ev~~yL~~~~ 51 (62)
T cd00122 7 PPGWKRELVIRKSGSAGKGDVYYYSPCGKKLRSKPEVARYLEKTG 51 (62)
T ss_pred CCCeEEEEEEcCCCCCCcceEEEECCCCceecCHHHHHHHHHhCC
Confidence 7899988 231378999999999999999999999998763
No 74
>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD). The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1.
Probab=95.31 E-value=0.0063 Score=59.83 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=33.8
Q ss_pred ccccccC-----CCcCceeeEEEEecCCceeccccccccccccc
Q 000127 159 ERVWASG-----NSIPRTSYQNYYAVNGNRFDSMFDVPCHLGLV 197 (2127)
Q Consensus 159 e~~w~~~-----~~~~~~~~~~y~~~~g~~f~s~~~~a~~lgl~ 197 (2127)
..||..+ ++-.+..+++|++|.|++|+|+.||+.||+-.
T Consensus 8 p~GW~r~~~~R~~gs~~k~DvyY~sP~Gkk~RS~~ev~~yL~~~ 51 (77)
T cd01396 8 PPGWKRELVPRKSGSAGKFDVYYISPTGKKFRSKVELARYLEKN 51 (77)
T ss_pred CCCCEEEEEEecCCCCCcceEEEECCCCCEEECHHHHHHHHHhC
Confidence 4799988 44238999999999999999999999999875
No 75
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=93.69 E-value=0.073 Score=71.85 Aligned_cols=99 Identities=21% Similarity=0.307 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHHHH
Q 000127 1002 IMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVW 1081 (2127)
Q Consensus 1002 ImKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRLVW 1081 (2127)
..+-++.+|..+...+....|..|||.- -++||.++|+.||||.|+..++.+|.|. ..+.|-+|+.++-
T Consensus 566 ~~kLl~~~l~~lq~kD~~gif~~pvd~~----------e~pdy~~iik~pmd~~t~~~kl~s~~y~-tle~ieed~~l~~ 634 (1051)
T KOG0955|consen 566 FKKLLQKSLDKLQKKDSYGIFAEPVDPS----------ELPDYIDIIKKPMDFFTMRLKLESGAYS-TLEPIEEDVNLIV 634 (1051)
T ss_pred HHHHHHHHHHHhhcccccCceeeccChh----------hcccHHHHhcCccchhhhhhhccccchh-hhhHHHHhHhHhH
Confidence 3577889999999999999999999872 2679999999999999999999999999 6777999999999
Q ss_pred HhhhhhcCCCchHHHHHHHhhchhhhhhHH
Q 000127 1082 HHICTAYSDQSDLLQLAGKLCQNFEVLYKK 1111 (2127)
Q Consensus 1082 sN~~tyNgdgSEVveLAekLSQiFESrYkK 1111 (2127)
.||+.|+..+......|..+.+-....+.+
T Consensus 635 ~nc~~yn~~dtv~~r~av~~~e~~~~~~~~ 664 (1051)
T KOG0955|consen 635 SNCMEYNAKDTVYYRAAVRLRELIKKDFRN 664 (1051)
T ss_pred hHHHHhhccCeehHhhhHHHHhhhhhHHHh
Confidence 999999998877777777776654444443
No 76
>smart00391 MBD Methyl-CpG binding domain. Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain
Probab=93.65 E-value=0.026 Score=55.64 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=33.9
Q ss_pred ccccccC-----CCcC-ceeeEEEEecCCceecccccccccccccc
Q 000127 159 ERVWASG-----NSIP-RTSYQNYYAVNGNRFDSMFDVPCHLGLVS 198 (2127)
Q Consensus 159 e~~w~~~-----~~~~-~~~~~~y~~~~g~~f~s~~~~a~~lgl~~ 198 (2127)
..||+-+ .+.+ +...++|++|.|+.|+|+.||+.||+-+.
T Consensus 9 p~GW~R~~~~r~~g~~~~~~dV~Y~sP~GkklRs~~ev~~YL~~~~ 54 (77)
T smart00391 9 PCGWRRETKQRKSGRSAGKFDVYYISPCGKKLRSKSELARYLHKNG 54 (77)
T ss_pred CCCcEEEEEEecCCCCCCcccEEEECCCCCeeeCHHHHHHHHHhCC
Confidence 6799776 2223 78999999999999999999999999775
No 77
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=93.12 E-value=0.022 Score=49.05 Aligned_cols=34 Identities=35% Similarity=1.091 Sum_probs=20.8
Q ss_pred CCeEEecCCCCCCcccccCCCCCCCCCC-CccCcccc
Q 000127 1167 DNVLLCDTCDSGYHTYCLTPPLTRVPEG-NWYCPPCL 1202 (2127)
Q Consensus 1167 geLLlCD~CD~aYHl~CL~PPL~~VPeG-dW~CP~Cv 1202 (2127)
+.||.|+.|.-..|..|.+ +..+|.+ +|+|..|.
T Consensus 2 n~ll~C~~C~v~VH~~CYG--v~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYG--VSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT---SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCC--cccCCCCCcEECCcCC
Confidence 5789999999999999999 6788887 89999884
No 78
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=91.52 E-value=0.057 Score=70.15 Aligned_cols=85 Identities=20% Similarity=0.278 Sum_probs=69.3
Q ss_pred HHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHHHHHhhhhhcCCCc
Q 000127 1013 AAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICTAYSDQS 1092 (2127)
Q Consensus 1013 Ll~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRLVWsN~~tyNgdgS 1092 (2127)
+-.+..+|.|..||+...|+ ++.|+.++.+|||.++|..||.+ .|.........|...+|.||+.++...-
T Consensus 4 ~~~~~~~~~f~~~v~~v~l~--------~~~~~~~~~~~~d~~~~~~~~e~-n~~~~~~~~~~~f~~~~sn~~~~~~~~~ 74 (640)
T KOG1474|consen 4 ARKHKLAWPFLEPVDAVALN--------LPAYYEIIKRPMDIGTIEKRVEN-NYYFSASECIADFKTKFSNCYLFNDSGD 74 (640)
T ss_pred cccccccccccCccchhhcc--------chhhhcccCCCCCchhhhhhhcc-CccccHhhhhhhccccccchhcccCCcc
Confidence 33567789999999885555 77899999999999999999998 5554666677788889999999998877
Q ss_pred hHHHHHHHhhchhh
Q 000127 1093 DLLQLAGKLCQNFE 1106 (2127)
Q Consensus 1093 EVveLAekLSQiFE 1106 (2127)
+|..++..+...|.
T Consensus 75 ~v~~~~~~~~~~~~ 88 (640)
T KOG1474|consen 75 DVVRMKQSLEKLFP 88 (640)
T ss_pred chhhccccchhhcc
Confidence 78888887776553
No 79
>PF15612 WHIM1: WSTF, HB1, Itc1p, MBD9 motif 1; PDB: 2Y9Z_B 2Y9Y_B.
Probab=91.44 E-value=0.18 Score=45.29 Aligned_cols=44 Identities=34% Similarity=0.707 Sum_probs=36.7
Q ss_pred hhhccccccccccChhHHHHHHHHhhhhccchhhhhhhhhhhhh
Q 000127 1241 LAATMEMRDYWDYSDKERIFLLKFLCDELLNSTNIREHLERCAS 1284 (2127)
Q Consensus 1241 Laid~lEKEFW~LSv~ERifLLKfLcDE~LSStLIRehLEqcvd 1284 (2127)
....+....||.++..+|..+|++||+..+++..+|++++++.+
T Consensus 5 ~~~~l~~~~y~~L~~~~kl~iL~~L~~~~l~s~~vr~~i~~~~e 48 (50)
T PF15612_consen 5 LAPPLETGEYYELSPEEKLEILRALCDQLLSSSSVRNEIEEREE 48 (50)
T ss_dssp G-CCCCCSTCCCS-HHHHHHHHHHHHHHHCC-CCHHHHHHHHHT
T ss_pred hhHHHHcCCcccCCHHHHHHHHHHHHHHHcCcHHHHHHHHHhhc
Confidence 34556678999999999999999999999999999999998765
No 80
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=86.54 E-value=0.71 Score=63.38 Aligned_cols=91 Identities=18% Similarity=0.228 Sum_probs=73.4
Q ss_pred HHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHHHHHhhhh
Q 000127 1007 RKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICT 1086 (2127)
Q Consensus 1007 r~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRLVWsN~~t 1086 (2127)
..+.++|.+..+.-+|..||+... ..+|+.||.+|||+.+++..+....|. .-+-|++|+.+++.|-..
T Consensus 1267 ~~i~n~~~~~~~t~~f~~Pv~~k~----------v~dyy~vi~~P~~lq~~kk~v~kr~y~-~r~~fle~~~~~~~ns~~ 1335 (1563)
T KOG0008|consen 1267 ETIINQARSSPNTYPFPTPVNAKE----------VKDYYRVITPPMDLQTQKKLVRKRLYE-SREHFLEELPLIVSNSTK 1335 (1563)
T ss_pred HHHHHHHhcCCCCcCCCCccchhh----------ccchhhccCCCcchHHHHHHHHHHHHH-HHHHHHHHhHHHhhchhh
Confidence 457788889999999999987743 458999999999999999999999998 556699999999999999
Q ss_pred hcCCCchHHHHHHH-hhchhhhh
Q 000127 1087 AYSDQSDLLQLAGK-LCQNFEVL 1108 (2127)
Q Consensus 1087 yNgdgSEVveLAek-LSQiFESr 1108 (2127)
||++.+....-+.. |+..|+.+
T Consensus 1336 yng~~~~~t~~~q~mls~~~~~~ 1358 (1563)
T KOG0008|consen 1336 YNGPLASLTRQQQSMLSLCFEKL 1358 (1563)
T ss_pred hcCchHHHHHHHHHHHHHHHHhh
Confidence 99988766555543 33344443
No 81
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=85.27 E-value=0.68 Score=63.54 Aligned_cols=71 Identities=18% Similarity=0.266 Sum_probs=60.9
Q ss_pred HHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHHHHHhhhhhcCC
Q 000127 1011 RCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICTAYSD 1090 (2127)
Q Consensus 1011 keLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRLVWsN~~tyNgd 1090 (2127)
..|..-..+|+|++||+... .++|..+|++|||+.+|......-.|. +...|..||.+++.|+..||+.
T Consensus 1392 s~~~~ipes~~f~~~v~~k~----------~~~yy~kik~pmdl~~i~~n~~~~~y~-s~~e~l~dv~~i~~n~~~~ng~ 1460 (1563)
T KOG0008|consen 1392 SQMKEIPESWPFHEPVNKKR----------VPDYYKKIKNPMDLETILKNIPPHKYD-SRSEFLDDVNLIYVNSVEYNGA 1460 (1563)
T ss_pred HHHHhcchhcccccccchhh----------chHHHHHhcChhhHHHHhhcCCccccc-cHHHHhhhhHhhcccceeecCc
Confidence 33557788999999998843 457999999999999999999999998 4578999999999999999986
Q ss_pred Cc
Q 000127 1091 QS 1092 (2127)
Q Consensus 1091 gS 1092 (2127)
..
T Consensus 1461 e~ 1462 (1563)
T KOG0008|consen 1461 ES 1462 (1563)
T ss_pred cc
Confidence 54
No 82
>cd01397 HAT_MBD Methyl-CpG binding domains (MBD) present in putative chromatin remodelling factor such as BAZ2A; BAZ2A contains a MBD, DDT, PHD-type zinc finger and Bromo domain suggesting that BAZ2A might be associated with histone acetyltransferase (HAT) activity. The Drosophila melanogaster toutatis protein, a putative subunit of the chromatin-remodeling complex, and other such proteins in this group share a similar domain architecture with BAZ2A, as does the Caenorhabditis elegans flectin homolog.
Probab=85.17 E-value=0.36 Score=47.74 Aligned_cols=38 Identities=21% Similarity=0.259 Sum_probs=31.3
Q ss_pred ccccccC---CCc-C-ceeeEEEEecCCceecccccccccccc
Q 000127 159 ERVWASG---NSI-P-RTSYQNYYAVNGNRFDSMFDVPCHLGL 196 (2127)
Q Consensus 159 e~~w~~~---~~~-~-~~~~~~y~~~~g~~f~s~~~~a~~lgl 196 (2127)
+.||+=+ .+. + ..-.++|+||-|+.|+|+.||+.||+=
T Consensus 7 ~~GW~Re~vir~~~~~~~~dV~Y~aPcGKklRs~~ev~~yL~~ 49 (73)
T cd01397 7 ELGWRRETRIRGLGGRIQGEVAYYAPCGKKLRQYPEVIKYLSK 49 (73)
T ss_pred CCCceeEEEeccCCCCccceEEEECCCCcccccHHHHHHHHHh
Confidence 4788877 121 3 667899999999999999999999984
No 83
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=82.88 E-value=0.88 Score=57.24 Aligned_cols=51 Identities=33% Similarity=0.797 Sum_probs=40.0
Q ss_pred ccccccccC--CCCCCCeEEecCCCCCCcccccCCC-CCCCCCC-------CccCcccccC
Q 000127 1154 EGVCKVCGI--DKDDDNVLLCDTCDSGYHTYCLTPP-LTRVPEG-------NWYCPPCLSG 1204 (2127)
Q Consensus 1154 dd~CkVCg~--~~d~geLLlCD~CD~aYHl~CL~PP-L~~VPeG-------dW~CP~Cv~~ 1204 (2127)
-..|.||-. ..+.+++|.||.|.-.-|-.|.+-- -..||.| .|||..|+++
T Consensus 119 ~~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~G 179 (707)
T KOG0957|consen 119 AVICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYG 179 (707)
T ss_pred ceEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcC
Confidence 347999954 3478899999999999999998742 1345655 5999999887
No 84
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=82.77 E-value=0.5 Score=61.08 Aligned_cols=52 Identities=31% Similarity=0.808 Sum_probs=37.8
Q ss_pred ccccccccCCC--CCCCeEEecCCCCCCcccccCCCCCCC-CCCCccCcccccCC
Q 000127 1154 EGVCKVCGIDK--DDDNVLLCDTCDSGYHTYCLTPPLTRV-PEGNWYCPPCLSGN 1205 (2127)
Q Consensus 1154 dd~CkVCg~~~--d~geLLlCD~CD~aYHl~CL~PPL~~V-PeGdW~CP~Cv~~~ 1205 (2127)
+..|.+|+..+ ..+.|+-|..|...||.+|+.--+... -.+-|.||.|+.-.
T Consensus 18 ~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe 72 (694)
T KOG4443|consen 18 CLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCE 72 (694)
T ss_pred hhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeee
Confidence 45688886544 467899999999999999988544332 22349999996443
No 85
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=80.65 E-value=1.9 Score=56.38 Aligned_cols=69 Identities=16% Similarity=0.175 Sum_probs=62.5
Q ss_pred CCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHHHHHhhhhhcCCCchHHHHHHHhhchhhhhh
Q 000127 1040 GLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICTAYSDQSDLLQLAGKLCQNFEVLY 1109 (2127)
Q Consensus 1040 GLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRLVWsN~~tyNgdgSEVveLAekLSQiFESrY 1109 (2127)
..++|+.+|..||.|.-|+.|+..+.|. ..+-|..|+.+++.|+..|+..++.+..++..|...|.+.-
T Consensus 87 ~~p~yy~~i~~pisl~~ik~kv~k~~y~-~~~~f~~D~~lm~ena~~~n~~ds~~~~~s~~l~~~~~~~~ 155 (629)
T KOG1827|consen 87 EFPEYYYVIQQPISLDQIKRKVKKGRYK-RLSFFQLDFLLMTENARLYNRPDSLIYKDSGELEKYFISLE 155 (629)
T ss_pred cCCCcceeecCcccHHHHHHHHHhcccc-cHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhhhcchhhhh
Confidence 3458999999999999999999999999 67789999999999999999999999999999888777644
No 86
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=80.51 E-value=0.71 Score=54.90 Aligned_cols=92 Identities=15% Similarity=0.215 Sum_probs=57.9
Q ss_pred cccccccCCC------CCCCeEEecCCCCCCcccccCCCC---CCCCCCCccCccc-ccCCCCCCccCCCCCcccccccc
Q 000127 1155 GVCKVCGIDK------DDDNVLLCDTCDSGYHTYCLTPPL---TRVPEGNWYCPPC-LSGNCKNKYMSQVPHVSSRIPKR 1224 (2127)
Q Consensus 1155 d~CkVCg~~~------d~geLLlCD~CD~aYHl~CL~PPL---~~VPeGdW~CP~C-v~~~c~~~~~~Qe~~~~sq~~rK 1224 (2127)
..|++|.... ..+.+++|..|...||.+|+.-+. ..+-...|.|..| .|..|+++....+.. ++
T Consensus 259 ~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC~IC~~P~~E~E~~------FC 332 (381)
T KOG1512|consen 259 NERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCELCRICLGPVIESEHL------FC 332 (381)
T ss_pred hhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHhhhccCCcccchhee------cc
Confidence 4688885432 356799999999999999988442 2233458999999 567777655443333 33
Q ss_pred cccchhhhhhhhhhhhhhhccccccccccChhH
Q 000127 1225 RHQGEFTCRILEEVFHLAATMEMRDYWDYSDKE 1257 (2127)
Q Consensus 1225 y~~GE~~~~f~ee~~hLaid~lEKEFW~LSv~E 1257 (2127)
..+..-.|.||-.+..| ...-|-|....
T Consensus 333 D~CDRG~HT~CVGL~~l-----P~G~WICD~~C 360 (381)
T KOG1512|consen 333 DVCDRGPHTLCVGLQDL-----PRGEWICDMRC 360 (381)
T ss_pred ccccCCCCccccccccc-----cCccchhhhHH
Confidence 33444455666554433 34557665433
No 87
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=78.80 E-value=1.4 Score=58.17 Aligned_cols=75 Identities=20% Similarity=0.395 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHH
Q 000127 1000 DVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVRE 1079 (2127)
Q Consensus 1000 dlImKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRL 1079 (2127)
+.+...|+ ..+.+++|-++|+. ..-+.|+.|++-|||+.++.+++..+-|. +.+.|+.|+.+
T Consensus 292 ~~~~~~~~-------~~~~s~~~~~kvs~----------~~a~~y~~i~k~pmdl~t~~~k~~~~~y~-~~~~fv~d~~~ 353 (720)
T KOG1472|consen 292 EELYEAAE-------RTEHSTPFLEKVSK----------EDAPNYYQIIKAPMDLSTELKKLKSGPYC-SKEEFVNDLML 353 (720)
T ss_pred HHHHHHhc-------ccccccccccCCCh----------hhCcchHHhhhcchHHHHHHHHhcccccc-chhHHHHHHHH
Confidence 44455655 37899999999977 23567899999999999999999999998 77889999999
Q ss_pred HHHhhhhhcCCCc
Q 000127 1080 VWHHICTAYSDQS 1092 (2127)
Q Consensus 1080 VWsN~~tyNgdgS 1092 (2127)
+|+||..|+.+..
T Consensus 354 ~~~n~~~~n~ee~ 366 (720)
T KOG1472|consen 354 IWRNCEKYNSEES 366 (720)
T ss_pred HHhcchhhccccc
Confidence 9999999998754
No 88
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=74.53 E-value=1.5 Score=49.28 Aligned_cols=49 Identities=33% Similarity=0.852 Sum_probs=36.4
Q ss_pred ccccc---cCCCCCCCeEEecCCCCCCcccccCCCC------CCCCCCC--ccCcccccC
Q 000127 1156 VCKVC---GIDKDDDNVLLCDTCDSGYHTYCLTPPL------TRVPEGN--WYCPPCLSG 1204 (2127)
Q Consensus 1156 ~CkVC---g~~~d~geLLlCD~CD~aYHl~CL~PPL------~~VPeGd--W~CP~Cv~~ 1204 (2127)
+|.+| +....-+.|+.|-+|-.+||..||+|-- ++|-.++ -.|..|+--
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~ 60 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGI 60 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcCh
Confidence 37777 4555678999999999999999999864 3444443 568888643
No 89
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=61.48 E-value=4.6 Score=38.41 Aligned_cols=32 Identities=34% Similarity=0.884 Sum_probs=27.7
Q ss_pred cccccccCCC-CCCCeEEecCCCCCCcccccCC
Q 000127 1155 GVCKVCGIDK-DDDNVLLCDTCDSGYHTYCLTP 1186 (2127)
Q Consensus 1155 d~CkVCg~~~-d~geLLlCD~CD~aYHl~CL~P 1186 (2127)
..|.+|+..- +.++++.|..|...||-.|...
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 4699998765 4889999999999999999873
No 90
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=59.37 E-value=6.9 Score=44.90 Aligned_cols=40 Identities=30% Similarity=0.850 Sum_probs=31.4
Q ss_pred ccccccCCC-----CCCCeEEecCCCCCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1156 VCKVCGIDK-----DDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1156 ~CkVCg~~~-----d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
.|.+|...+ +.+....|..|...||..|... =.||.|...
T Consensus 154 iCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~---------~~CpkC~R~ 198 (202)
T PF13901_consen 154 ICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK---------KSCPKCARR 198 (202)
T ss_pred CCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC---------CCCCCcHhH
Confidence 699997643 3457889999999999999982 139999754
No 91
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=58.36 E-value=4.1 Score=50.69 Aligned_cols=99 Identities=15% Similarity=0.103 Sum_probs=72.2
Q ss_pred HHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHHHHHhhhh
Q 000127 1007 RKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICT 1086 (2127)
Q Consensus 1007 r~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRLVWsN~~t 1086 (2127)
.++|+.+...+.-..|--||-+.+ -++|.++|++|||+.|+..+.+-++|-. ...|-.|-+++-.|...
T Consensus 25 ehhlrkl~sKdp~q~fafplt~~m----------ap~y~~iis~Pmd~~t~r~kidd~~yl~-L~~m~~d~kl~~~na~~ 93 (418)
T KOG1828|consen 25 EHHLRKLPSKDPKQKFAFPLTDKM----------APNYLEIISEPMDRITKRSKIDDTRYLV-LSQMEFDRKLPDGNATL 93 (418)
T ss_pred HHHHHhccccChhhhhccccchhh----------ccchHhhhhcccccccccccCCCcccee-chhhhhhhcccccchhh
Confidence 356666777777777777775532 2479999999999999999999999984 44488999999999999
Q ss_pred hcCCCchHHHHHHHhhchhhhhhHHhhhhh
Q 000127 1087 AYSDQSDLLQLAGKLCQNFEVLYKKEVLTL 1116 (2127)
Q Consensus 1087 yNgdgSEVveLAekLSQiFESrYkKqVLr~ 1116 (2127)
||.+.-.+...|..|+...--.+...++.+
T Consensus 94 yn~~~Tv~~~aaKrL~~v~~~~~qe~~l~f 123 (418)
T KOG1828|consen 94 YNLHPTVPIVAAKRLCPVRLGMTQERLLSF 123 (418)
T ss_pred hhcCCccccccccccchhhcchhhHHHHHh
Confidence 998776665556666654443334444433
No 92
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=57.94 E-value=5.9 Score=51.69 Aligned_cols=47 Identities=32% Similarity=0.842 Sum_probs=37.8
Q ss_pred cccccccCCCCCCCeEEecCCCCCCcccccCCCCCC-CCCCCccCcccccC
Q 000127 1155 GVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTR-VPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1155 d~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL~~-VPeGdW~CP~Cv~~ 1204 (2127)
..|.+|. .++.+++|+.|+..||..|.++++.. .+.+.|.|..|-.+
T Consensus 48 ts~~~~~---~~gn~~~~~~~~~s~h~~~~~~~~sp~~~~~~~~~~~~~~~ 95 (613)
T KOG4299|consen 48 TSCGICK---SGGNLLCCDHCPASFHLECDKPPLSPDLKGSEINCSRCPKG 95 (613)
T ss_pred hhcchhh---hcCCccccccCccccchhccCcccCcccccccccccCCCcc
Confidence 4688885 67899999999999999999999862 33347888888654
No 93
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=53.95 E-value=9 Score=52.42 Aligned_cols=105 Identities=15% Similarity=0.172 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHHHHHh
Q 000127 1004 KQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHH 1083 (2127)
Q Consensus 1004 KrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRLVWsN 1083 (2127)
+.|..|+......... -..++...++.+. -..-+++|+.+|.+|+++..|..++....|. ....-..|+-.+|.|
T Consensus 1027 ~~~~~i~~~~~~~~~~--~~r~~~~~~~~~~--s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~n 1101 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDS--AGRELSEVFLKLP--SRKEYPDYYEIIKKPVAIDKIKKRIENHKYN-SLKELEKDFMLLFNN 1101 (1157)
T ss_pred HHHHHHHHHHHhcccc--cccccchhcccCc--ccccccchHHHhcchhhHHHHhhhccccccc-hHHHHHHHHHhhcch
Confidence 5588888777743332 1112222111111 1234678999999999999999999999998 666677899999999
Q ss_pred hhhhcCCCchHHHHHHHhhchhhhhhHHhh
Q 000127 1084 ICTAYSDQSDLLQLAGKLCQNFEVLYKKEV 1113 (2127)
Q Consensus 1084 ~~tyNgdgSEVveLAekLSQiFESrYkKqV 1113 (2127)
...|+..++.|..-|..|...|+..+.+.-
T Consensus 1102 a~~~~~egs~~y~d~~~l~~~~~~~~~~~~ 1131 (1157)
T KOG0386|consen 1102 ARTYNEEGSRVYEDAIVLQSVFKSARQEIS 1131 (1157)
T ss_pred hhhhccCCceechhHHHHHHHHhhhHHHHh
Confidence 999999999999888888888887776544
No 94
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=53.30 E-value=1.6 Score=42.54 Aligned_cols=50 Identities=24% Similarity=0.515 Sum_probs=20.0
Q ss_pred cccccccCCCC-CC--CeEEec--CCCCCCcccccCCCCCCCCCC-------CccCcccccC
Q 000127 1155 GVCKVCGIDKD-DD--NVLLCD--TCDSGYHTYCLTPPLTRVPEG-------NWYCPPCLSG 1204 (2127)
Q Consensus 1155 d~CkVCg~~~d-~g--eLLlCD--~CD~aYHl~CL~PPL~~VPeG-------dW~CP~Cv~~ 1204 (2127)
..|.+|..... .+ ..+.|+ .|...||+.||.--+...+.+ .+-||.|...
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~ 64 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSP 64 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCe
Confidence 46999976533 33 358898 899999999986322221111 3568888754
No 95
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=51.40 E-value=2.9 Score=55.47 Aligned_cols=49 Identities=22% Similarity=0.299 Sum_probs=43.4
Q ss_pred CccccccccCCCCCCCeEEecCCCCCCcccccCC-CCCCCCCCCccCcccccC
Q 000127 1153 DEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTP-PLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1153 ~dd~CkVCg~~~d~geLLlCD~CD~aYHl~CL~P-PL~~VPeGdW~CP~Cv~~ 1204 (2127)
.+..|..|. .....++|+.|-+.||..|+.| |++..+.|-|-|+.|..+
T Consensus 505 ~d~~~~~~~---~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~ 554 (696)
T KOG0383|consen 505 HDISCEEQI---KKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKK 554 (696)
T ss_pred chhhHHHHH---HhhccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHH
Confidence 456788886 5577899999999999999999 999999999999999765
No 96
>cd01395 HMT_MBD Methyl-CpG binding domains (MBD) present in putative histone methyltransferases (HMT) such as CLLD8 and SETDB1 proteins; CLLD8 contains a MBD, a PreSET and a bifurcated SET domain, suggesting that CLLD8 might be associated with methylation-mediated transcriptional repression. SETDB1 and other proteins in this group have a similar domain architecture. SETDB1 is a novel KAP-1-associated histone H3, lysine 9-specific methyltransferase that contributes to HP1-mediated silencing of euchromatic genes by KRAB zinc-finger proteins.
Probab=51.05 E-value=5.2 Score=38.66 Aligned_cols=30 Identities=20% Similarity=0.179 Sum_probs=25.7
Q ss_pred eeeEEEEecCCceecccccccccccccccc
Q 000127 171 TSYQNYYAVNGNRFDSMFDVPCHLGLVSNY 200 (2127)
Q Consensus 171 ~~~~~y~~~~g~~f~s~~~~a~~lgl~~~~ 200 (2127)
...++|.||-|+.+++|.||.+||=.+.++
T Consensus 23 k~~V~Y~aPCGr~Lr~~~EV~~YL~~t~~~ 52 (60)
T cd01395 23 KKHVIYKAPCGRSLRNMSEVHRYLRETCSF 52 (60)
T ss_pred ccceEEECCcchhhhcHHHHHHHHHhcccc
Confidence 455899999999999999999999877433
No 97
>KOG4161 consensus Methyl-CpG binding transcription regulators [Transcription; Chromatin structure and dynamics]
Probab=49.17 E-value=18 Score=43.54 Aligned_cols=40 Identities=23% Similarity=0.345 Sum_probs=34.2
Q ss_pred ccccccC-----CCcC-ceeeEEEEecCCceecccccccccccccc
Q 000127 159 ERVWASG-----NSIP-RTSYQNYYAVNGNRFDSMFDVPCHLGLVS 198 (2127)
Q Consensus 159 e~~w~~~-----~~~~-~~~~~~y~~~~g~~f~s~~~~a~~lgl~~ 198 (2127)
-.||-.+ -+.+ +-++++|.+|-|+.|+|-.++|.|||..-
T Consensus 20 p~GW~~~~~~r~~~~~~g~~dv~~~sp~g~~frsk~~l~~~~~~~~ 65 (272)
T KOG4161|consen 20 PPGWTREEVQRSSGLSAGKSDVYYISPSGKKFRSKPQLARYLGKVG 65 (272)
T ss_pred CCCcchhhhcccCCCcccccceEEeCCcccccccccHHHHHhcccc
Confidence 4689777 1233 89999999999999999999999999985
No 98
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=47.34 E-value=8.1 Score=31.02 Aligned_cols=24 Identities=38% Similarity=0.785 Sum_probs=21.3
Q ss_pred ccchhhhccccccccccccccCcc
Q 000127 1731 RFHCRRCHLSFSARNELEEHNDAK 1754 (2127)
Q Consensus 1731 r~HC~~CH~t~~~~~e~e~H~~~k 1754 (2127)
++.|..|-+.|.+...|+.|..+|
T Consensus 1 q~~C~~C~k~f~~~~~~~~H~~sk 24 (27)
T PF12171_consen 1 QFYCDACDKYFSSENQLKQHMKSK 24 (27)
T ss_dssp -CBBTTTTBBBSSHHHHHCCTTSH
T ss_pred CCCcccCCCCcCCHHHHHHHHccC
Confidence 368999999999999999999875
No 99
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=45.18 E-value=5.2 Score=31.06 Aligned_cols=23 Identities=43% Similarity=0.785 Sum_probs=20.8
Q ss_pred cchhhhccccccccccccccCcc
Q 000127 1732 FHCRRCHLSFSARNELEEHNDAK 1754 (2127)
Q Consensus 1732 ~HC~~CH~t~~~~~e~e~H~~~k 1754 (2127)
+.|..|..+|.+...|+.|..|+
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s~ 23 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRSK 23 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTTH
T ss_pred CCCCCCCCCcCCHHHHHHHHCcC
Confidence 47999999999999999998774
No 100
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=31.91 E-value=20 Score=37.00 Aligned_cols=43 Identities=23% Similarity=0.530 Sum_probs=27.5
Q ss_pred ccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1160 CGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1160 Cg~~~d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
|...++.-.++++. |...||+.|+.--|..- ...=.||-|+..
T Consensus 38 Ck~Pgd~Cplv~g~-C~H~FH~hCI~kWl~~~-~~~~~CPmCR~~ 80 (85)
T PF12861_consen 38 CKFPGDDCPLVWGK-CSHNFHMHCILKWLSTQ-SSKGQCPMCRQP 80 (85)
T ss_pred ccCCCCCCceeecc-CccHHHHHHHHHHHccc-cCCCCCCCcCCe
Confidence 33333344455444 99999999987666543 223389999865
No 101
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=29.99 E-value=26 Score=42.02 Aligned_cols=48 Identities=27% Similarity=0.733 Sum_probs=22.9
Q ss_pred CCCCcCccccccccCCC-------C---CCCeEEecCCCCCCcccccCCCCCCCCCCCccCcccccCCCC
Q 000127 1148 PKAPWDEGVCKVCGIDK-------D---DDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSGNCK 1207 (2127)
Q Consensus 1148 Pr~~w~dd~CkVCg~~~-------d---~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~~c~ 1207 (2127)
+...|....|.|||... . +...+.|..|...||..=+ .||.|-.....
T Consensus 166 ~~~~w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~------------~Cp~Cg~~~~~ 223 (290)
T PF04216_consen 166 PPEGWQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRI------------KCPYCGNTDHE 223 (290)
T ss_dssp S---TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TT------------S-TTT---SS-
T ss_pred ccCCccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCC------------CCcCCCCCCCc
Confidence 34678889999998752 1 3488999999999996533 49999766433
No 102
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=28.81 E-value=49 Score=36.53 Aligned_cols=44 Identities=23% Similarity=0.401 Sum_probs=36.2
Q ss_pred CCchhhHHhhhcccccCCChhhhHhhHHHHHHhhhhhcCCCchHH
Q 000127 1051 PLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICTAYSDQSDLL 1095 (2127)
Q Consensus 1051 PMDLGTIDlRLa~G~Y~GSpE~FAEDVRLVWsN~~tyNgdgSEVv 1095 (2127)
|.||..++++|..|.|. +...|.+||-.+.......-+..+++.
T Consensus 59 p~dL~~V~kkl~~G~Y~-sv~~F~~DvvkIiqa~l~~e~~~pe~~ 102 (131)
T cd05493 59 PLDLEAVGKKLEAGFYT-SVLDFSDDIVKIIQAALNSEGGQPEIK 102 (131)
T ss_pred cccHHHHHHHHhcccee-hHHHHHHHHHHHHHHHHhhccCCcccc
Confidence 78999999999999999 677799999999888776555555543
No 103
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=28.57 E-value=40 Score=42.58 Aligned_cols=61 Identities=16% Similarity=0.133 Sum_probs=53.2
Q ss_pred CCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHHHHHhhhhhcCCCchHHHHHHHhhc
Q 000127 1041 LLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICTAYSDQSDLLQLAGKLCQ 1103 (2127)
Q Consensus 1041 LLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRLVWsN~~tyNgdgSEVveLAekLSQ 1103 (2127)
.++|.-+|++++|++|++-+..+.+|. + -.|..|-.++-.|+.+|+.+..-...||.++..
T Consensus 238 aP~YSm~Ik~~~~~~Tygdk~~andy~-S-~~f~~D~kl~~l~amT~gehsk~yyelank~lh 298 (418)
T KOG1828|consen 238 APGYSMTITEVEPPGTYGDKSSANDYE-S-LSFTQDRKLIALKAVTNGEHSKSYYELANKQLH 298 (418)
T ss_pred cccccccccccCCCcchhhhhhhhhhh-h-hhhhcccchhhHHHHhcCCcchHHHHHHHhhhh
Confidence 457777799999999999999999998 4 559999999999999999988888888887776
No 104
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=28.37 E-value=53 Score=40.49 Aligned_cols=42 Identities=21% Similarity=0.549 Sum_probs=32.0
Q ss_pred CcCccccccccCCC-----------CCCCeEEecCCCCCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1151 PWDEGVCKVCGIDK-----------DDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1151 ~w~dd~CkVCg~~~-----------d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
.|+...|.|||... ++...+.|..|...||+.=+. |+.|-..
T Consensus 181 ~~~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~------------C~~Cg~~ 233 (305)
T TIGR01562 181 RESRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVK------------CSHCEES 233 (305)
T ss_pred cCCCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCcc------------CCCCCCC
Confidence 35667999998742 345789999999999976443 9999654
No 105
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=28.27 E-value=45 Score=41.15 Aligned_cols=42 Identities=26% Similarity=0.610 Sum_probs=32.1
Q ss_pred CcCccccccccCCC----------CCCCeEEecCCCCCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1151 PWDEGVCKVCGIDK----------DDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1151 ~w~dd~CkVCg~~~----------d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
.|....|.|||... ++...|.|..|...||+.=+. |+.|-..
T Consensus 184 ~~~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~------------C~~Cg~~ 235 (309)
T PRK03564 184 GEQRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVK------------CSNCEQS 235 (309)
T ss_pred ccCCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCcc------------CCCCCCC
Confidence 45678999998752 355789999999999976443 8888653
No 106
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=27.02 E-value=32 Score=31.99 Aligned_cols=33 Identities=30% Similarity=0.829 Sum_probs=17.1
Q ss_pred EecCCCCCCcccccCC--------CCCCCCCCCccCcccccC
Q 000127 1171 LCDTCDSGYHTYCLTP--------PLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1171 lCD~CD~aYHl~CL~P--------PL~~VPeGdW~CP~Cv~~ 1204 (2127)
.|..|.-.|.-.==+| +...+|+ +|.||.|-..
T Consensus 3 ~C~~CgyvYd~~~Gd~~~~i~pGt~F~~Lp~-~w~CP~C~a~ 43 (47)
T PF00301_consen 3 QCPVCGYVYDPEKGDPENGIPPGTPFEDLPD-DWVCPVCGAP 43 (47)
T ss_dssp EETTTSBEEETTTBBGGGTB-TT--GGGS-T-T-B-TTTSSB
T ss_pred CCCCCCEEEcCCcCCcccCcCCCCCHHHCCC-CCcCcCCCCc
Confidence 3555555555443222 3456666 7999999876
No 107
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=26.85 E-value=5 Score=35.12 Aligned_cols=43 Identities=26% Similarity=0.597 Sum_probs=28.0
Q ss_pred cccccccCCCC-CCCeEEecCCCCCCcccccCCCCCCCCCCCccCcccc
Q 000127 1155 GVCKVCGIDKD-DDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCL 1202 (2127)
Q Consensus 1155 d~CkVCg~~~d-~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv 1202 (2127)
+.|.+|...-. ++.++... |.-.||..|+..-+..- -.||.|+
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~----~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRN----NSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHS----SB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhC----CcCCccC
Confidence 35889976554 34444444 99999999988655442 2788874
No 108
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.78 E-value=47 Score=41.58 Aligned_cols=50 Identities=26% Similarity=0.606 Sum_probs=37.2
Q ss_pred cccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCcccccCCCC
Q 000127 1155 GVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSGNCK 1207 (2127)
Q Consensus 1155 d~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~~c~ 1207 (2127)
+.|.+|...-..++.|-==-|.-.||..|.+|=|.+- .=+||-|.+..-.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~---r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT---RTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc---CccCCCCCCcCCC
Confidence 4899998665556555556789999999999877654 1279999886433
No 109
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=25.22 E-value=39 Score=34.81 Aligned_cols=29 Identities=24% Similarity=0.813 Sum_probs=24.7
Q ss_pred cccccccCCCCCCCeEEecC--CCCCCcccccC
Q 000127 1155 GVCKVCGIDKDDDNVLLCDT--CDSGYHTYCLT 1185 (2127)
Q Consensus 1155 d~CkVCg~~~d~geLLlCD~--CD~aYHl~CL~ 1185 (2127)
..|.+|++. .|-.+.|.. |...||..|..
T Consensus 56 ~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~ 86 (110)
T PF13832_consen 56 LKCSICGKS--GGACIKCSHPGCSTAFHPTCAR 86 (110)
T ss_pred CcCcCCCCC--CceeEEcCCCCCCcCCCHHHHH
Confidence 479999854 678999987 99999999975
No 110
>COG1773 Rubredoxin [Energy production and conversion]
Probab=25.20 E-value=45 Score=32.19 Aligned_cols=40 Identities=33% Similarity=0.860 Sum_probs=23.7
Q ss_pred ccccccCCCCCCC-eEEecCCCCCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1156 VCKVCGIDKDDDN-VLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1156 ~CkVCg~~~d~ge-LLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
.|.+||---++++ --.|+.|+ .-+...+|. +|.||.|-..
T Consensus 5 ~C~~CG~vYd~e~Gdp~~gi~p--------gT~fedlPd-~w~CP~Cg~~ 45 (55)
T COG1773 5 RCSVCGYVYDPEKGDPRCGIAP--------GTPFEDLPD-DWVCPECGVG 45 (55)
T ss_pred EecCCceEeccccCCccCCCCC--------CCchhhCCC-ccCCCCCCCC
Confidence 5778864333221 12244443 334678887 7999999764
No 111
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=25.01 E-value=58 Score=41.91 Aligned_cols=29 Identities=24% Similarity=0.577 Sum_probs=23.0
Q ss_pred ccccccCCC---CCCCeEEecCCCCCCccccc
Q 000127 1156 VCKVCGIDK---DDDNVLLCDTCDSGYHTYCL 1184 (2127)
Q Consensus 1156 ~CkVCg~~~---d~geLLlCD~CD~aYHl~CL 1184 (2127)
.|-+|++.+ ++-..+-||.|.-+-|+.|.
T Consensus 130 ~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCA 161 (446)
T PF07227_consen 130 MCCICSKFDDNKNTCSWIGCDVCGHWCHLDCA 161 (446)
T ss_pred CccccCCcccCCCCeeEEeccCCCceehhhhh
Confidence 466787754 35568999999999999994
No 112
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.99 E-value=25 Score=42.53 Aligned_cols=42 Identities=26% Similarity=0.621 Sum_probs=28.6
Q ss_pred ccCCCCCCcCccccccccCCCCCCC-------eEEecCCCCCCcccccC
Q 000127 1144 ASEIPKAPWDEGVCKVCGIDKDDDN-------VLLCDTCDSGYHTYCLT 1185 (2127)
Q Consensus 1144 ~s~lPr~~w~dd~CkVCg~~~d~ge-------LLlCD~CD~aYHl~CL~ 1185 (2127)
.+.+|...-++..|.+|++.-+.+. -+.==.|.-.||-+|.+
T Consensus 214 ~~glPtkhl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIr 262 (328)
T KOG1734|consen 214 PSGLPTKHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIR 262 (328)
T ss_pred CCCCCCCCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhh
Confidence 4567777778899999987543222 11122588999999977
No 113
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=24.71 E-value=31 Score=36.41 Aligned_cols=48 Identities=25% Similarity=0.672 Sum_probs=31.4
Q ss_pred cccccccCCCCCCCeEEe------cCC---CCCCcccccCCCCC-----CCCCCCccCccccc
Q 000127 1155 GVCKVCGIDKDDDNVLLC------DTC---DSGYHTYCLTPPLT-----RVPEGNWYCPPCLS 1203 (2127)
Q Consensus 1155 d~CkVCg~~~d~geLLlC------D~C---D~aYHl~CL~PPL~-----~VPeGdW~CP~Cv~ 1203 (2127)
..|..|.+...+.. ..| ..| ...|=-.||.-... -+..++|.||.|+-
T Consensus 8 ~~CHqCrqKt~~~~-~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 8 KTCHQCRQKTLDFK-TICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCchhhcCCCCCCc-eEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 46899987655444 456 666 77777777653332 23466899999963
No 114
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=20.57 E-value=43 Score=27.87 Aligned_cols=29 Identities=31% Similarity=0.706 Sum_probs=12.7
Q ss_pred ccccccCCCCCCCeEEecCCCCCCccccc
Q 000127 1156 VCKVCGIDKDDDNVLLCDTCDSGYHTYCL 1184 (2127)
Q Consensus 1156 ~CkVCg~~~d~geLLlCD~CD~aYHl~CL 1184 (2127)
.|.+|+....++..-.|..|+-..|..|.
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 48899877766678889999999999873
No 115
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=20.17 E-value=39 Score=31.45 Aligned_cols=21 Identities=38% Similarity=1.127 Sum_probs=16.8
Q ss_pred Eeec-ccc-ccCCCccchhhhcc
Q 000127 1719 YRCE-CLE-PVLPTRFHCRRCHL 1739 (2127)
Q Consensus 1719 ~RC~-CLE-pi~p~r~HC~~CH~ 1739 (2127)
|+|+ |.. ||.-.|+||+.|.+
T Consensus 1 y~Cd~C~~~pI~G~R~~C~~C~~ 23 (48)
T cd02341 1 FKCDSCGIEPIPGTRYHCSECDD 23 (48)
T ss_pred CCCCCCCCCccccceEECCCCCC
Confidence 3443 665 99999999999985
No 116
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=20.10 E-value=25 Score=42.68 Aligned_cols=39 Identities=26% Similarity=0.369 Sum_probs=33.3
Q ss_pred ccccchhHHHHHHHHHHhhccCcccccHHHHHHHHHhCCcc
Q 000127 541 LIRSNDELETSCKALVKWLDQDRFGLDVEFVQEIVEQLPRV 581 (2127)
Q Consensus 541 ~i~~~~~~~~~~~~l~~wl~qdrfgld~efvqe~~e~lp~~ 581 (2127)
++--..-||++|.---+|-.| ||+-+|-|||+|||||+.
T Consensus 206 l~l~tsHLEStr~h~P~r~~q--F~~~~~k~~EaIe~lPnA 244 (349)
T KOG2756|consen 206 LCLMTSHLESTRGHAPERMNQ--FKMVLKKMQEAIESLPNA 244 (349)
T ss_pred EEEEeccccCCCCCChHHHHH--HHHHHHHHHHHHHhCCCc
Confidence 344467789999999999877 889999999999999985
Done!