Query 000127
Match_columns 2127
No_of_seqs 379 out of 1170
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 18:14:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000127.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000127hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wzo_A Transforming growth fac 99.8 3.7E-19 1.3E-23 185.4 7.3 64 293-357 4-73 (146)
2 2ouo_A HUNK1 protein, bromodom 99.7 1.2E-16 4.2E-21 163.5 8.4 122 976-1113 4-128 (130)
3 3mb3_A PH-interacting protein; 99.5 7.7E-15 2.6E-19 150.6 9.6 107 999-1116 19-126 (135)
4 3g0l_A Hwalp4, bromodomain adj 99.5 9.1E-15 3.1E-19 146.6 9.7 102 1001-1113 13-114 (117)
5 4alg_A Bromodomain-containing 99.5 5.8E-15 2E-19 155.2 8.5 119 981-1114 18-136 (154)
6 3nxb_A CAT eye syndrome critic 99.5 6E-15 2.1E-19 147.7 7.8 101 1000-1111 15-115 (116)
7 2yyn_A Transcription intermedi 99.5 1.4E-14 4.9E-19 149.2 9.7 106 997-1114 16-123 (135)
8 3jvl_A Bromodomain-containing 99.5 8.5E-15 2.9E-19 147.4 7.0 106 999-1114 8-116 (120)
9 2oss_A HUNK1 protein, bromodom 99.5 2E-14 6.8E-19 146.8 9.5 106 999-1113 19-124 (127)
10 3d7c_A General control of amin 99.5 2.8E-14 9.7E-19 142.3 9.5 103 999-1112 5-107 (112)
11 3fkm_X Signaling protein; brom 99.5 4.3E-14 1.5E-18 150.3 9.9 109 998-1115 18-126 (166)
12 2dat_A Possible global transcr 99.5 5.3E-14 1.8E-18 142.7 9.2 104 999-1113 11-120 (123)
13 3q2e_A Bromodomain and WD repe 99.5 6.5E-14 2.2E-18 141.9 9.4 106 1000-1116 9-115 (123)
14 3p1f_A CREB-binding protein; s 99.5 6.6E-14 2.2E-18 140.8 9.1 107 999-1114 9-116 (119)
15 2grc_A Probable global transcr 99.5 9.9E-14 3.4E-18 141.9 9.6 107 998-1115 8-121 (129)
16 1e6i_A Transcriptional activat 99.5 8.3E-14 2.8E-18 141.1 8.6 99 1003-1112 15-113 (121)
17 2i7k_A Bromodomain-containing 99.5 1.2E-13 4E-18 139.6 9.2 105 1000-1115 7-111 (117)
18 3o36_A Transcription intermedi 99.4 3.1E-13 1E-17 144.6 10.7 105 996-1112 76-182 (184)
19 2d9e_A Peregrin; four-helix bu 99.4 2E-13 7E-18 138.3 8.2 104 1000-1114 6-109 (121)
20 3iu5_A Protein polybromo-1; PB 99.4 1.8E-13 6.1E-18 137.3 7.7 101 1002-1113 6-112 (116)
21 3ljw_A Protein polybromo-1; al 99.4 6.5E-13 2.2E-17 134.1 8.6 105 998-1113 5-115 (120)
22 3mb4_A Protein polybromo-1; PB 99.4 6.3E-13 2.2E-17 134.9 8.5 101 1001-1112 15-121 (124)
23 3rcw_A Bromodomain-containing 99.4 7.1E-13 2.4E-17 136.1 8.5 102 1002-1114 14-115 (135)
24 3mqm_A Probable histone-lysine 99.4 9.4E-13 3.2E-17 133.8 9.2 106 999-1115 7-118 (126)
25 3hme_A Bromodomain-containing 99.4 8.4E-13 2.9E-17 134.1 8.3 103 1002-1115 14-116 (123)
26 2ri7_A Nucleosome-remodeling f 99.4 6.2E-13 2.1E-17 140.6 7.5 103 998-1111 69-171 (174)
27 3k2j_A Protein polybromo-1; PB 99.3 1.4E-12 4.9E-17 133.9 8.5 105 1000-1115 16-126 (130)
28 2ro1_A Transcription intermedi 99.3 2.9E-12 9.8E-17 138.7 9.5 101 999-1115 74-179 (189)
29 3uv4_A Second bromodomain of h 99.3 5.6E-12 1.9E-16 133.4 9.5 106 997-1114 22-132 (158)
30 3u5n_A E3 ubiquitin-protein li 99.3 6E-12 2.1E-16 137.2 9.2 104 998-1113 78-201 (207)
31 2e6r_A Jumonji/ARID domain-con 99.2 1.7E-12 5.9E-17 126.8 3.1 56 1152-1207 14-69 (92)
32 3dai_A ATPase family AAA domai 99.2 1.7E-11 5.7E-16 125.5 9.4 98 1002-1110 11-112 (130)
33 3tlp_A Protein polybromo-1; PB 99.2 1.1E-11 3.6E-16 129.4 8.0 101 1003-1114 26-133 (150)
34 1f62_A Transcription factor WS 99.2 3.5E-12 1.2E-16 111.7 3.4 49 1156-1204 2-50 (51)
35 1xwh_A Autoimmune regulator; P 99.2 8.1E-12 2.8E-16 115.2 4.7 52 1153-1207 7-58 (66)
36 3uv5_A Transcription initiatio 99.2 2.3E-11 8E-16 137.1 9.2 103 1000-1113 13-115 (265)
37 2dkw_A Hypothetical protein KI 99.2 4E-11 1.4E-15 123.6 9.9 97 1000-1112 11-111 (131)
38 1mm2_A MI2-beta; PHD, zinc fin 99.2 1.4E-11 4.6E-16 112.3 5.2 50 1152-1204 7-56 (61)
39 1fp0_A KAP-1 corepressor; PHD 99.2 2.2E-11 7.6E-16 118.7 6.5 50 1152-1204 23-72 (88)
40 3aad_A Transcription initiatio 99.2 2.3E-11 7.8E-16 139.1 7.7 102 1000-1112 46-147 (292)
41 2lri_C Autoimmune regulator; Z 99.2 1.4E-11 4.7E-16 114.3 4.1 50 1152-1204 10-59 (66)
42 2e6s_A E3 ubiquitin-protein li 99.1 2.7E-11 9.4E-16 115.3 5.3 54 1150-1203 20-76 (77)
43 2yql_A PHD finger protein 21A; 99.1 2.1E-11 7.2E-16 109.1 3.7 48 1153-1203 8-55 (56)
44 3asl_A E3 ubiquitin-protein li 99.1 2.7E-11 9.3E-16 113.3 3.9 55 1150-1204 12-69 (70)
45 2yt5_A Metal-response element- 99.1 2.3E-11 8E-16 111.2 2.5 55 1151-1205 3-62 (66)
46 2puy_A PHD finger protein 21A; 99.1 4.3E-11 1.5E-15 108.3 3.6 49 1153-1204 4-52 (60)
47 2l5u_A Chromodomain-helicase-D 99.1 4.3E-11 1.5E-15 109.1 3.3 49 1153-1204 10-58 (61)
48 3shb_A E3 ubiquitin-protein li 99.1 6.8E-11 2.3E-15 112.7 4.4 54 1150-1203 20-76 (77)
49 1wev_A Riken cDNA 1110020M19; 99.0 5E-11 1.7E-15 115.7 2.8 51 1154-1204 16-72 (88)
50 3uv5_A Transcription initiatio 99.0 3E-10 1E-14 128.1 8.7 91 1013-1114 149-239 (265)
51 2kwj_A Zinc finger protein DPF 99.0 8.2E-11 2.8E-15 118.4 2.1 57 1148-1204 49-108 (114)
52 3u5n_A E3 ubiquitin-protein li 99.0 1.5E-10 5.2E-15 126.2 4.3 51 1151-1204 4-54 (207)
53 3ask_A E3 ubiquitin-protein li 99.0 1.9E-10 6.5E-15 128.0 4.7 49 1156-1204 176-225 (226)
54 3o36_A Transcription intermedi 99.0 2.1E-10 7.1E-15 122.9 4.5 49 1153-1204 3-51 (184)
55 3aad_A Transcription initiatio 99.0 4.6E-10 1.6E-14 128.5 7.4 90 1013-1113 182-271 (292)
56 2r0y_A Chromatin structure-rem 99.0 3.5E-10 1.2E-14 130.7 6.0 90 1016-1116 178-267 (311)
57 2r10_A Chromatin structure-rem 99.0 4.3E-10 1.5E-14 132.0 6.4 91 1016-1117 228-318 (361)
58 2ku3_A Bromodomain-containing 99.0 1.8E-10 6.2E-15 108.2 2.6 52 1151-1204 13-66 (71)
59 3v43_A Histone acetyltransfera 98.9 3.1E-10 1E-14 113.9 4.2 57 1147-1203 51-111 (112)
60 2ysm_A Myeloid/lymphoid or mix 98.9 5.4E-10 1.8E-14 111.3 5.1 58 1147-1204 44-104 (111)
61 2ro1_A Transcription intermedi 98.9 4.1E-10 1.4E-14 122.0 4.3 48 1154-1204 2-49 (189)
62 2l43_A N-teminal domain from h 98.9 2.4E-10 8.3E-15 111.0 1.3 51 1153-1205 24-76 (88)
63 2r10_A Chromatin structure-rem 98.8 4.7E-09 1.6E-13 123.3 7.6 97 1004-1112 81-179 (361)
64 2k16_A Transcription initiatio 98.8 2.1E-09 7.2E-14 100.7 2.5 52 1153-1204 17-68 (75)
65 2r0y_A Chromatin structure-rem 98.7 1.1E-08 3.6E-13 118.5 7.5 99 1002-1112 29-129 (311)
66 4gne_A Histone-lysine N-methyl 98.7 1.2E-08 4.3E-13 102.6 5.2 53 1152-1209 13-67 (107)
67 2ysm_A Myeloid/lymphoid or mix 98.5 8.3E-08 2.8E-12 95.7 6.7 78 1152-1229 5-83 (111)
68 2lv9_A Histone-lysine N-methyl 98.5 5.2E-08 1.8E-12 96.3 4.8 49 1154-1204 28-76 (98)
69 1wen_A Inhibitor of growth fam 98.5 1.6E-07 5.4E-12 88.4 6.1 53 1148-1204 10-65 (71)
70 2vnf_A ING 4, P29ING4, inhibit 98.3 1.5E-07 5.2E-12 85.8 1.9 48 1153-1204 9-59 (60)
71 1weu_A Inhibitor of growth fam 98.3 5.9E-07 2E-11 88.4 6.0 51 1150-1204 32-85 (91)
72 3c6w_A P28ING5, inhibitor of g 98.3 1.9E-07 6.5E-12 85.0 2.0 48 1153-1204 8-58 (59)
73 2lbm_A Transcriptional regulat 98.3 1.4E-07 4.7E-12 99.2 1.1 51 1151-1204 60-117 (142)
74 2g6q_A Inhibitor of growth pro 98.1 6.6E-07 2.3E-11 82.3 2.0 48 1153-1204 10-60 (62)
75 2jmi_A Protein YNG1, ING1 homo 98.1 1.2E-06 4.1E-11 86.1 3.4 47 1154-1204 26-76 (90)
76 2kwj_A Zinc finger protein DPF 98.0 1.6E-06 5.4E-11 87.5 1.7 92 1155-1255 2-104 (114)
77 3ql9_A Transcriptional regulat 98.0 6.4E-07 2.2E-11 92.9 -1.1 52 1150-1204 53-111 (129)
78 3lqh_A Histone-lysine N-methyl 97.9 1.6E-05 5.6E-10 86.5 8.9 91 1000-1112 74-164 (183)
79 3iu6_A Protein polybromo-1; PB 97.9 3.9E-05 1.3E-09 81.3 10.7 107 1000-1115 6-112 (147)
80 3v43_A Histone acetyltransfera 97.9 3.4E-06 1.2E-10 84.8 1.7 75 1155-1229 6-91 (112)
81 1x4i_A Inhibitor of growth pro 97.7 9.2E-06 3.2E-10 76.4 2.4 46 1155-1204 7-55 (70)
82 3o70_A PHD finger protein 13; 97.7 1.8E-05 6E-10 74.1 3.7 50 1153-1204 18-67 (68)
83 1we9_A PHD finger family prote 97.5 4.1E-05 1.4E-09 69.9 3.3 51 1154-1204 6-58 (64)
84 3o7a_A PHD finger protein 13 v 97.5 3.7E-05 1.3E-09 68.1 2.7 50 1152-1203 2-51 (52)
85 1wem_A Death associated transc 97.3 4.6E-05 1.6E-09 71.9 0.9 50 1155-1205 17-71 (76)
86 1wee_A PHD finger family prote 97.3 9.3E-05 3.2E-09 69.3 2.9 49 1155-1204 17-66 (72)
87 2rsd_A E3 SUMO-protein ligase 97.3 0.0001 3.6E-09 68.5 3.1 49 1154-1204 10-65 (68)
88 2ri7_A Nucleosome-remodeling f 97.3 3E-05 1E-09 82.3 -0.7 51 1153-1204 7-59 (174)
89 2xb1_A Pygopus homolog 2, B-ce 97.3 5.7E-05 2E-09 75.7 0.9 48 1155-1204 4-61 (105)
90 1wew_A DNA-binding family prot 97.2 0.00017 5.7E-09 68.7 3.1 48 1154-1204 16-72 (78)
91 2vpb_A Hpygo1, pygopus homolog 97.1 6.9E-05 2.4E-09 69.7 0.0 46 1155-1202 9-64 (65)
92 1wep_A PHF8; structural genomi 96.9 0.00015 5.2E-09 69.0 0.4 50 1155-1205 13-64 (79)
93 2kgg_A Histone demethylase jar 96.7 0.00024 8.4E-09 63.0 0.2 47 1156-1202 4-52 (52)
94 1wil_A KIAA1045 protein; ring 96.7 0.00035 1.2E-08 68.2 0.7 50 1153-1203 14-75 (89)
95 3vxv_A Methyl-CPG-binding doma 96.6 0.00057 2E-08 64.5 1.5 41 159-199 7-53 (69)
96 3kqi_A GRC5, PHD finger protei 96.3 0.0006 2.1E-08 64.4 0.0 50 1156-1206 12-63 (75)
97 1d9n_A Methyl-CPG-binding prot 96.3 0.001 3.6E-08 63.7 1.3 38 159-196 12-55 (75)
98 3lqh_A Histone-lysine N-methyl 96.2 0.0014 4.7E-08 71.6 1.7 49 1156-1204 4-63 (183)
99 2ky8_A Methyl-CPG-binding doma 96.2 0.0014 4.8E-08 62.3 1.5 39 159-197 14-58 (72)
100 3pur_A Lysine-specific demethy 96.0 0.0025 8.5E-08 78.6 2.7 41 1166-1206 55-96 (528)
101 3kv5_D JMJC domain-containing 95.8 0.0014 4.7E-08 80.5 -0.3 49 1155-1206 38-90 (488)
102 3c2i_A Methyl-CPG-binding prot 95.8 0.0025 8.7E-08 63.7 1.4 40 159-198 25-70 (97)
103 1ub1_A MECP2, attachment regio 95.4 0.0094 3.2E-07 62.5 4.2 40 159-198 39-84 (133)
104 4bbq_A Lysine-specific demethy 94.7 0.0073 2.5E-07 60.6 0.9 39 1166-1204 72-114 (117)
105 3kv4_A PHD finger protein 8; e 94.1 0.0055 1.9E-07 74.6 -1.9 50 1157-1206 7-58 (447)
106 4gne_A Histone-lysine N-methyl 93.7 0.035 1.2E-06 56.3 3.5 51 1144-1198 46-98 (107)
107 2ku7_A MLL1 PHD3-CYP33 RRM chi 88.8 0.15 5E-06 50.8 1.9 38 1168-1205 1-45 (140)
108 3rsn_A SET1/ASH2 histone methy 72.5 2.6 8.9E-05 46.3 4.2 46 1159-1204 9-59 (177)
109 4bbq_A Lysine-specific demethy 69.9 1.1 3.8E-05 44.9 0.6 40 1154-1207 7-46 (117)
110 3a1b_A DNA (cytosine-5)-methyl 62.1 2.1 7.1E-05 46.4 0.8 49 1153-1204 78-134 (159)
111 2pv0_B DNA (cytosine-5)-methyl 57.3 1.8 6E-05 52.4 -0.8 48 1154-1204 93-148 (386)
112 2d8s_A Cellular modulator of i 53.0 11 0.00037 36.2 3.9 51 1152-1204 13-67 (80)
113 1iym_A EL5; ring-H2 finger, ub 46.9 10 0.00036 32.4 2.6 47 1154-1204 5-52 (55)
114 3k1l_B Fancl; UBC, ring, RWD, 41.7 9.6 0.00033 46.0 2.0 32 1155-1186 309-345 (381)
115 1v87_A Deltex protein 2; ring- 39.4 11 0.00039 36.8 1.9 36 1170-1205 56-92 (114)
116 2ect_A Ring finger protein 126 38.9 30 0.001 31.6 4.5 50 1153-1206 14-63 (78)
117 1x4j_A Ring finger protein 38; 38.3 9.2 0.00032 35.0 0.9 48 1153-1204 22-69 (75)
118 1dx8_A Rubredoxin; electron tr 35.7 22 0.00074 34.0 3.0 19 1185-1204 31-49 (70)
119 2ct0_A Non-SMC element 1 homol 35.7 17 0.00058 34.8 2.3 50 1151-1204 12-61 (74)
120 2kiz_A E3 ubiquitin-protein li 35.0 7.5 0.00026 34.9 -0.2 48 1153-1204 13-60 (69)
121 2kn9_A Rubredoxin; metalloprot 33.7 24 0.0008 34.8 3.0 20 1184-1204 50-69 (81)
122 2ecm_A Ring finger and CHY zin 30.4 14 0.00047 31.5 0.7 48 1153-1204 4-52 (55)
123 6rxn_A Rubredoxin; electron tr 30.4 25 0.00084 31.4 2.3 17 1187-1204 23-39 (46)
124 2l0b_A E3 ubiquitin-protein li 30.2 8.6 0.00029 36.8 -0.7 48 1153-1204 39-86 (91)
125 1vyx_A ORF K3, K3RING; zinc-bi 29.7 6.3 0.00022 36.0 -1.6 49 1153-1204 5-56 (60)
126 1weq_A PHD finger protein 7; s 29.4 28 0.00097 34.5 2.7 35 1167-1204 44-79 (85)
127 2ecl_A Ring-box protein 2; RNF 29.2 20 0.00067 33.8 1.6 47 1154-1204 15-73 (81)
128 3nw0_A Non-structural maintena 26.8 14 0.00048 41.8 0.2 47 1154-1204 180-226 (238)
129 1e8j_A Rubredoxin; iron-sulfur 25.7 52 0.0018 29.8 3.5 19 1185-1204 27-45 (52)
130 1yk4_A Rubredoxin, RD; electro 25.3 33 0.0011 31.1 2.2 18 1186-1204 27-44 (52)
131 4rxn_A Rubredoxin; electron tr 25.1 35 0.0012 31.3 2.4 17 1187-1204 29-45 (54)
132 1s24_A Rubredoxin 2; electron 25.0 28 0.00095 34.7 1.8 20 1184-1204 58-77 (87)
133 2v3b_B Rubredoxin 2, rubredoxi 24.8 35 0.0012 31.2 2.3 18 1186-1204 28-45 (55)
134 2ep4_A Ring finger protein 24; 23.0 19 0.00064 32.7 0.2 47 1154-1204 15-61 (74)
135 4a0k_B E3 ubiquitin-protein li 21.9 22 0.00074 36.6 0.4 28 1173-1204 82-109 (117)
136 2lq6_A Bromodomain-containing 21.4 41 0.0014 33.0 2.2 38 1146-1185 10-49 (87)
137 1fv5_A First zinc finger of U- 21.3 14 0.00049 30.5 -0.8 24 1733-1756 10-33 (36)
138 2fiy_A Protein FDHE homolog; F 21.2 40 0.0014 39.8 2.5 41 1152-1204 180-231 (309)
139 3dpl_R Ring-box protein 1; ubi 20.9 22 0.00075 35.7 0.2 31 1170-1204 68-98 (106)
No 1
>2wzo_A Transforming growth factor beta regulator 1; nucleus, cell cycle, tumor suppressor; 1.60A {Homo sapiens}
Probab=99.76 E-value=3.7e-19 Score=185.38 Aligned_cols=64 Identities=33% Similarity=0.695 Sum_probs=58.8
Q ss_pred CcceeecCeEEEEecccc-CCCCCCCCcceeeccccc-----ccccCCCccEEEEEeccCCCCCceeEEEE
Q 000127 293 GLPVEFEDFCLLAVGEVD-PRPSYHNSSQIWPVGYKS-----SWHDKVTGSLFVCDVSDGGDFGPLFKVKR 357 (2127)
Q Consensus 293 ~~p~~~~~~~v~slg~i~-~r~~yh~~~~i~pvgyks-----~~~~~~~~~l~~c~v~dgg~~gp~f~~~r 357 (2127)
=||+.+|+++|+|||+|. +||.||++++||||||++ |..|+..++.|+|+|+|||+ ||+|+|+.
T Consensus 4 ~lP~~~g~l~v~slG~i~~~~~~fh~~~~IyPvGy~~~R~y~s~~dp~~~~~Y~c~I~d~~~-~P~F~V~~ 73 (146)
T 2wzo_A 4 VFPIGLGGLTVYSLGEIITDRPGFHDESAIYPVGYCSTRIYASMKCPDQKCLYTCQIKDGGV-QPQFEIVP 73 (146)
T ss_dssp CCCEEETTEEEEEEEECCCSSGGGBCSSCBCCEEEEEEEEEECSSCTTSEEEEEEEEEECSS-SEEEEEEE
T ss_pred eecEEECCEEEEEeeeEccCCCCccCCCceeCCCEEEEEEEecccCCCCeEEEEEEEEECCC-cceeEEEe
Confidence 389999999999999997 799999999999999999 44589999999999999996 89999874
No 2
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.65 E-value=1.2e-16 Score=163.49 Aligned_cols=122 Identities=24% Similarity=0.362 Sum_probs=96.3
Q ss_pred cccCCCCCCCCcccCCCcccccchHHHHHHHHHHHHHHHhcc---hhhhhhhcccccCcCCCCCCCCCCCCcccccccCC
Q 000127 976 DVCGEDQPQKPTRKRKNRCFTSVPDVIMKQCRKVLRCAAAAD---EERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPL 1052 (2127)
Q Consensus 976 d~~ge~~~~~P~kkrK~~~~iSlSdlImKrCr~VLkeLl~sd---~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPM 1052 (2127)
++.++..+++|.|+++ .++. +++|..||+.|+.+. .+++|.+||++.. .++++|+.+|++||
T Consensus 4 ~~p~s~~~~~~~k~~~------~~~~-l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~--------~~~pdY~~iIk~Pm 68 (130)
T 2ouo_A 4 DVPDSQQHPAPEKSSK------VSEQ-LKCCSGILKEMFAKKHAAYAWPFYKPVDVEA--------LGLHDYCDIIKHPM 68 (130)
T ss_dssp ---------------C------HHHH-HHHHHHHHHHHTSGGGHHHHGGGSSCCCTTS--------TTCTTHHHHCSSCC
T ss_pred CCCCCCCCCCCCCCcc------cHHH-HHHHHHHHHHHHhCCcchhHHHhcCCCChhh--------ccCCcHHHHcCCCC
Confidence 5667777777777776 4555 899999999999665 4899999998843 35889999999999
Q ss_pred chhhHHhhhcccccCCChhhhHhhHHHHHHhhhhhcCCCchHHHHHHHhhchhhhhhHHhh
Q 000127 1053 DFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEV 1113 (2127)
Q Consensus 1053 DLGTIDlRLa~G~Y~GSpE~FAEDVRLVWsN~~tyNgdgSEVveLAekLSQiFESrYkKqV 1113 (2127)
||+||+.|+..|.|. +.+.|.+||++||.||..||+.++.|..+|..|...|+..|.+++
T Consensus 69 DL~tI~~kl~~~~Y~-s~~ef~~Dv~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~lp 128 (130)
T 2ouo_A 69 DMSTIKSKLEAREYR-DAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMP 128 (130)
T ss_dssp CHHHHHHHHHTTCCS-SHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHTSC
T ss_pred CHHHHHHHHHcCCCC-CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 999999999999998 788899999999999999999999999999999999999988754
No 3
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.55 E-value=7.7e-15 Score=150.57 Aligned_cols=107 Identities=19% Similarity=0.284 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHH
Q 000127 999 PDVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVR 1078 (2127)
Q Consensus 999 SdlImKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVR 1078 (2127)
.+.+.++|..||+.|..++.+++|..||+. .++++|+.+|++||||+||+.|+..+.|. +++.|.+||+
T Consensus 19 ~~~l~~~~~~il~~l~~~~~s~~F~~pv~~----------~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~-~~~~f~~D~~ 87 (135)
T 3mb3_A 19 IQAWKKQCEELLNLIFQCEDSEPFRQPVDL----------LEYPDYRDIIDTPMDFATVRETLEAGNYE-SPMELCKDVR 87 (135)
T ss_dssp SSTHHHHHHHHHHHHHHSGGGGGGSSCCCT----------TTSTTHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCChhhcCCCCh----------hhCCCHHHHhCCCcCHHHHHHHHhCCCCC-CHHHHHHHHH
Confidence 355799999999999999999999999987 34789999999999999999999999999 7888999999
Q ss_pred HHHHhhhhhcCC-CchHHHHHHHhhchhhhhhHHhhhhh
Q 000127 1079 EVWHHICTAYSD-QSDLLQLAGKLCQNFEVLYKKEVLTL 1116 (2127)
Q Consensus 1079 LVWsN~~tyNgd-gSEVveLAekLSQiFESrYkKqVLr~ 1116 (2127)
+||.||..||++ ++.|+.+|..|...|+..+.+.+-.+
T Consensus 88 li~~Na~~yN~~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 126 (135)
T 3mb3_A 88 LIFSNSKAYTPSKRSRIYSMSLRLSAFFEEHISSVLSDY 126 (135)
T ss_dssp HHHHHHHHHSCCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999997 89999999999999999998876554
No 4
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.54 E-value=9.1e-15 Score=146.63 Aligned_cols=102 Identities=24% Similarity=0.360 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHHH
Q 000127 1001 VIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREV 1080 (2127)
Q Consensus 1001 lImKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRLV 1080 (2127)
..++.|..||+.|..++.+++|.+||+.. .+++|+.+|++||||+||+.|+..|.|. +.+.|.+|+++|
T Consensus 13 ~~~~~c~~il~~l~~~~~s~~F~~pv~~~----------~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~-~~~~f~~D~~li 81 (117)
T 3g0l_A 13 KDLALCSMILTEMETHEDAWPFLLPVNLK----------LVPGYKKVIKKPMDFSTIREKLSSGQYP-NLETFALDVRLV 81 (117)
T ss_dssp THHHHHHHHHHHHHTSTTCGGGSSCCCTT----------TSTTHHHHCSSCCCHHHHHHHHHTTCCC-SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCcCChh----------hcCChHHHcCCCCCHHHHHHHHhCCCCC-CHHHHHHHHHHH
Confidence 45899999999999999999999999873 2689999999999999999999999999 788899999999
Q ss_pred HHhhhhhcCCCchHHHHHHHhhchhhhhhHHhh
Q 000127 1081 WHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEV 1113 (2127)
Q Consensus 1081 WsN~~tyNgdgSEVveLAekLSQiFESrYkKqV 1113 (2127)
|.||..||++++.+..+|..|...|+..|.+.+
T Consensus 82 ~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 114 (117)
T 3g0l_A 82 FDNCETFNEDDSDIGRAGHNMRKYFEKKWTDTF 114 (117)
T ss_dssp HHHHHHHSCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988764
No 5
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.54 E-value=5.8e-15 Score=155.19 Aligned_cols=119 Identities=16% Similarity=0.224 Sum_probs=99.5
Q ss_pred CCCCCCcccCCCcccccchHHHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhh
Q 000127 981 DQPQKPTRKRKNRCFTSVPDVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLR 1060 (2127)
Q Consensus 981 ~~~~~P~kkrK~~~~iSlSdlImKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlR 1060 (2127)
.+.+.|.++.+ ..+++...|+.||+.|..+..+++|.+||++..+ ++++|+.+|++||||+||+.|
T Consensus 18 ~~~~~p~~~~r------~t~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~--------~~PdY~~iIk~PMDL~tI~~k 83 (154)
T 4alg_A 18 SHMSNPKKPGR------VTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKL--------GLPDYHKIIKQPMDMGTIKRR 83 (154)
T ss_dssp --------CCC------CBHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTT--------TCTTHHHHCSSCCCHHHHHHH
T ss_pred CCCCCCCCCCc------chHHHHHHHHHHHHHHHhCcCchhhcCCCChhhc--------cCCCHHHHcCCCCCHHHHHHH
Confidence 34445555544 3577677889999999999999999999998544 478899999999999999999
Q ss_pred hcccccCCChhhhHhhHHHHHHhhhhhcCCCchHHHHHHHhhchhhhhhHHhhh
Q 000127 1061 LAFGAYGGSHEAFLEDVREVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVL 1114 (2127)
Q Consensus 1061 La~G~Y~GSpE~FAEDVRLVWsN~~tyNgdgSEVveLAekLSQiFESrYkKqVL 1114 (2127)
+..+.|. +.+.|.+||++||.||..||+.++.|..+|..|...|+..+.+...
T Consensus 84 l~~~~Y~-s~~ef~~Dv~Lif~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~l~~ 136 (154)
T 4alg_A 84 LENNYYW-AASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQKVASMPQ 136 (154)
T ss_dssp HHTTCCS-SHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTTSCS
T ss_pred HhcCCCC-CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCc
Confidence 9999998 7888999999999999999999999999999999999988876553
No 6
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.54 E-value=6e-15 Score=147.74 Aligned_cols=101 Identities=18% Similarity=0.309 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHH
Q 000127 1000 DVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVRE 1079 (2127)
Q Consensus 1000 dlImKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRL 1079 (2127)
+...++|..||+.+..++.+++|..||+.. .+++|+.+|++||||+||+.|+..+.|. +++.|.+||++
T Consensus 15 ~~~~~~~~~il~~l~~~~~s~~F~~pv~~~----------~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~-~~~~f~~D~~l 83 (116)
T 3nxb_A 15 DDDFTAMYKVLDVVKAHKDSWPFLEPVDES----------YAPNYYQIIKAPMDISSMEKKLNGGLYC-TKEEFVNDMKT 83 (116)
T ss_dssp CCHHHHHHHHHHHHHHSTTCGGGSSCCCTT----------TSTTHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcHhhcCcCChh----------hccChHHHcCCCCCHHHHHHHHcCCCCC-CHHHHHHHHHH
Confidence 446999999999999999999999999873 4789999999999999999999999998 78889999999
Q ss_pred HHHhhhhhcCCCchHHHHHHHhhchhhhhhHH
Q 000127 1080 VWHHICTAYSDQSDLLQLAGKLCQNFEVLYKK 1111 (2127)
Q Consensus 1080 VWsN~~tyNgdgSEVveLAekLSQiFESrYkK 1111 (2127)
||.||..||+.++.+..+|..|...|+..+.|
T Consensus 84 i~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 84 MFRNCRKYNGESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999987764
No 7
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.53 E-value=1.4e-14 Score=149.17 Aligned_cols=106 Identities=20% Similarity=0.306 Sum_probs=95.6
Q ss_pred cchHHHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcc--cccCCChhhhH
Q 000127 997 SVPDVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAF--GAYGGSHEAFL 1074 (2127)
Q Consensus 997 SlSdlImKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~--G~Y~GSpE~FA 1074 (2127)
.++...+++|..||..|+.++.+++|..||+. .+++|+.+|++||||+||+.|+.. +.|. +.+.|.
T Consensus 16 ~m~p~~~~~c~~il~~L~~~~~s~~F~~Pv~~-----------~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~-s~~ef~ 83 (135)
T 2yyn_A 16 KLTPIDKRKCERLLLFLYCHEMSLAFQDPVPL-----------TVPDYYKIIKNPMDLSTIKKRLQEDYSMYS-KPEDFV 83 (135)
T ss_dssp CCCHHHHHHHHHHHHHHHTSGGGGGGSSCCCT-----------TSTTHHHHCSSCCCHHHHHHHHHSSSCCCS-SHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCccchhhcCCCcc-----------cCCCHHHHcCCCCCHHHHHHHHhccccCCC-CHHHHH
Confidence 34566689999999999999999999999964 378899999999999999999997 5787 788899
Q ss_pred hhHHHHHHhhhhhcCCCchHHHHHHHhhchhhhhhHHhhh
Q 000127 1075 EDVREVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVL 1114 (2127)
Q Consensus 1075 EDVRLVWsN~~tyNgdgSEVveLAekLSQiFESrYkKqVL 1114 (2127)
+||++||.||..||+.++.|+.+|..|...|+..+.+..-
T Consensus 84 ~Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 123 (135)
T 2yyn_A 84 ADFRLIFQNCAEFNEPDSEVANAGIKLENYFEELLKNLYP 123 (135)
T ss_dssp HHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999988876653
No 8
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.52 E-value=8.5e-15 Score=147.44 Aligned_cols=106 Identities=22% Similarity=0.340 Sum_probs=96.1
Q ss_pred hHHHHHHHHHHHHHHHhcch---hhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHh
Q 000127 999 PDVIMKQCRKVLRCAAAADE---ERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLE 1075 (2127)
Q Consensus 999 SdlImKrCr~VLkeLl~sd~---s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAE 1075 (2127)
++. +++|..||+.|+.++. +|+|.+||++. ..|+++|+.+|++||||+||+.|+..+.|. +.+.|.+
T Consensus 8 ~~~-l~~c~~il~~l~~~~~~~~a~~F~~pvd~~--------~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~-~~~~f~~ 77 (120)
T 3jvl_A 8 SEQ-LKCCSGILKEMFAKKHAAYAWPFYKPVDVE--------ALGLHDYCDIIKHPMDMSTIKSKLESREYR-DAQEFGA 77 (120)
T ss_dssp CHH-HHHHHHHHHHHTSGGGHHHHGGGSSCCCHH--------HHTCTTHHHHCSSCCCHHHHHHHHHTTCCC-SHHHHHH
T ss_pred HHH-HHHHHHHHHHHHhCcCccccchhcCCCCch--------hcCCCCHHHHcCCCCCHHHHHHHHccCCCC-CHHHHHH
Confidence 455 9999999999997766 89999999884 345789999999999999999999999998 7888999
Q ss_pred hHHHHHHhhhhhcCCCchHHHHHHHhhchhhhhhHHhhh
Q 000127 1076 DVREVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVL 1114 (2127)
Q Consensus 1076 DVRLVWsN~~tyNgdgSEVveLAekLSQiFESrYkKqVL 1114 (2127)
||++||.||..||+.++.+..+|..|...|+..+.+...
T Consensus 78 D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~p~ 116 (120)
T 3jvl_A 78 DVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPD 116 (120)
T ss_dssp HHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCcC
Confidence 999999999999999999999999999999998886653
No 9
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.52 E-value=2e-14 Score=146.76 Aligned_cols=106 Identities=16% Similarity=0.168 Sum_probs=95.7
Q ss_pred hHHHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHH
Q 000127 999 PDVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVR 1078 (2127)
Q Consensus 999 SdlImKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVR 1078 (2127)
.+.+-..|+.||+.|..+..+++|.+||+... .++++|+.+|++||||+||+.|+..|.|. +.+.|.+|++
T Consensus 19 ~~~l~~~~~~il~~L~~~~~a~~F~~PVd~~~--------~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~-s~~ef~~D~~ 89 (127)
T 2oss_A 19 TNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVK--------LNLPDYYKIIKTPMDMGTIKKRLENNYYW-NAQECIQDFN 89 (127)
T ss_dssp CHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTT--------TTCTTHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccchhhcCCCChhh--------ccCccHHHHcCCCCCHHHHHHHHHcCCCC-CHHHHHHHHH
Confidence 46667778899999999999999999998732 35789999999999999999999999998 7888999999
Q ss_pred HHHHhhhhhcCCCchHHHHHHHhhchhhhhhHHhh
Q 000127 1079 EVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEV 1113 (2127)
Q Consensus 1079 LVWsN~~tyNgdgSEVveLAekLSQiFESrYkKqV 1113 (2127)
+||+||..||+.++.+..+|..|...|+..+.+..
T Consensus 90 li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~lp 124 (127)
T 2oss_A 90 TMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELP 124 (127)
T ss_dssp HHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999998877543
No 10
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.51 E-value=2.8e-14 Score=142.28 Aligned_cols=103 Identities=17% Similarity=0.250 Sum_probs=96.0
Q ss_pred hHHHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHH
Q 000127 999 PDVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVR 1078 (2127)
Q Consensus 999 SdlImKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVR 1078 (2127)
++.+.+.|..||+.+..++.+++|..||+.. ++++|+.+|++||||+||+.|+..|.|. +.+.|.+|++
T Consensus 5 ~~~l~~~~~~il~~l~~~~~~~~F~~pvd~~----------~~pdY~~iIk~PmdL~tI~~kl~~~~Y~-s~~~f~~Dv~ 73 (112)
T 3d7c_A 5 PDQLYTTLKNLLAQIKSHPSAWPFMEPVKKS----------EAPDYYEVIRFPIDLKTMTERLRSRYYV-TRKLFVADLQ 73 (112)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGGGGSSCCCTT----------TSTTHHHHCSSCCCHHHHHHHHHTTCCC-SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCchhhcCCCCcc----------cccCHHHHccCCcCHHHHHHHHcCCCCc-CHHHHHHHHH
Confidence 5677999999999999999999999999873 4789999999999999999999999999 7888999999
Q ss_pred HHHHhhhhhcCCCchHHHHHHHhhchhhhhhHHh
Q 000127 1079 EVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKE 1112 (2127)
Q Consensus 1079 LVWsN~~tyNgdgSEVveLAekLSQiFESrYkKq 1112 (2127)
+||.||..||++++.+..+|..|...|+..+.+.
T Consensus 74 li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~ 107 (112)
T 3d7c_A 74 RVIANCREYNPPDSEYCRCASALEKFFYFKLKEG 107 (112)
T ss_dssp HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999887754
No 11
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.49 E-value=4.3e-14 Score=150.27 Aligned_cols=109 Identities=12% Similarity=0.177 Sum_probs=97.8
Q ss_pred chHHHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhH
Q 000127 998 VPDVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDV 1077 (2127)
Q Consensus 998 lSdlImKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDV 1077 (2127)
......+.|+.||+.|+.+..+++|..||++.. .++++|+.+|++||||+||+.|+..+.|. ++..|..||
T Consensus 18 ~~~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~--------~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~-s~~ef~~Dv 88 (166)
T 3fkm_X 18 GNKQWYLLANQLILSLSKYEGGHIFEKLVDAKK--------QNCPDYYDVIKNPMSFSCIKTKLKKGQYA-YPSEFVKDV 88 (166)
T ss_dssp TTHHHHHHHHHHHHHHTTSTTGGGGSSCCC-------------CCCGGGCCSSCCCHHHHHHHHHHTCCC-SHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhCCCChhhcCCCChhh--------ccCCCHHHhcCCCCCHHHHHHHHcCCCCC-CHHHHHHHH
Confidence 456779999999999999999999999998743 34789999999999999999999999999 788899999
Q ss_pred HHHHHhhhhhcCCCchHHHHHHHhhchhhhhhHHhhhh
Q 000127 1078 REVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVLT 1115 (2127)
Q Consensus 1078 RLVWsN~~tyNgdgSEVveLAekLSQiFESrYkKqVLr 1115 (2127)
++||.||..||+.++.|..+|..|...|+..+.++.+.
T Consensus 89 ~Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~l~~~~~~ 126 (166)
T 3fkm_X 89 QLIFDNCSLYNTSNSVVAITGKNIETYFNNQLIVMGYN 126 (166)
T ss_dssp HHHHHHHHHSSCTTSHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHcccc
Confidence 99999999999999999999999999999999887654
No 12
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=5.3e-14 Score=142.68 Aligned_cols=104 Identities=21% Similarity=0.268 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHHHHHHhcc------hhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhh
Q 000127 999 PDVIMKQCRKVLRCAAAAD------EERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEA 1072 (2127)
Q Consensus 999 SdlImKrCr~VLkeLl~sd------~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~ 1072 (2127)
++.+.++|+.||+.++.+. .+++|.+||+. .++++|+.+|++||||+||+.|+..+.|. +.+.
T Consensus 11 ~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~----------~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~-s~~~ 79 (123)
T 2dat_A 11 PPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSR----------KELPEYYELIRKPVDFKKIKERIRNHKYR-SLGD 79 (123)
T ss_dssp CHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCT----------TTSCHHHHHCSSCCCHHHHHHHHTTTCCC-SHHH
T ss_pred CHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCc----------ccCCCHHHHcCCCCCHHHHHHHHhCCCCC-CHHH
Confidence 5667999999999999765 58999999876 25789999999999999999999999998 7888
Q ss_pred hHhhHHHHHHhhhhhcCCCchHHHHHHHhhchhhhhhHHhh
Q 000127 1073 FLEDVREVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEV 1113 (2127)
Q Consensus 1073 FAEDVRLVWsN~~tyNgdgSEVveLAekLSQiFESrYkKqV 1113 (2127)
|.+|+++||.||..||+.++.+..+|..|...|+..+++.+
T Consensus 80 f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~p 120 (123)
T 2dat_A 80 LEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQSGP 120 (123)
T ss_dssp HHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999998877554
No 13
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.47 E-value=6.5e-14 Score=141.91 Aligned_cols=106 Identities=20% Similarity=0.333 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHH
Q 000127 1000 DVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVRE 1079 (2127)
Q Consensus 1000 dlImKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRL 1079 (2127)
+.+.++|+.||+.+..++.+++|..||+.. .+++|+.+|++||||+||+.|+..+.|. +++.|..|+++
T Consensus 9 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~~----------~~pdY~~~I~~PmdL~tI~~kl~~~~Y~-~~~~f~~D~~l 77 (123)
T 3q2e_A 9 SNWKKQCKELVNLIFQCEDSEPFRQPVDLV----------EYPDYRDIIDTPMDFGTVRETLDAGNYD-SPLEFCKDIRL 77 (123)
T ss_dssp -CHHHHHHHHHHHHHTSGGGGGGSSCCCTT----------TCTTHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcHhhcCCCChh----------hcCCHHHHcCCCCCHHHHHHHHhcCCCC-CHHHHHHHHHH
Confidence 557899999999999999999999999873 4789999999999999999999999998 78889999999
Q ss_pred HHHhhhhhcCC-CchHHHHHHHhhchhhhhhHHhhhhh
Q 000127 1080 VWHHICTAYSD-QSDLLQLAGKLCQNFEVLYKKEVLTL 1116 (2127)
Q Consensus 1080 VWsN~~tyNgd-gSEVveLAekLSQiFESrYkKqVLr~ 1116 (2127)
||.||..||++ ++.|..+|..|...|+..+.+.+-.+
T Consensus 78 i~~Na~~yN~~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 115 (123)
T 3q2e_A 78 IFSNAKAYTPNKRSKIYSMTLRLSALFEEKMKKISSDF 115 (123)
T ss_dssp HHHHHHHHSCCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999996 89999999999999999999877655
No 14
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.47 E-value=6.6e-14 Score=140.83 Aligned_cols=107 Identities=20% Similarity=0.295 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHHHHHHh-cchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhH
Q 000127 999 PDVIMKQCRKVLRCAAA-ADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDV 1077 (2127)
Q Consensus 999 SdlImKrCr~VLkeLl~-sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDV 1077 (2127)
++.+.+.|..+|..++. +..+++|.+||++..++ +++|+.+|++||||+||+.|+..|.|. +++.|.+||
T Consensus 9 ~~el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~--------~pdY~~iI~~Pmdl~tI~~kl~~~~Y~-~~~~f~~D~ 79 (119)
T 3p1f_A 9 PEELRQALMPTLEALYRQDPESLPFRQPVDPQLLG--------IPDYFDIVKNPMDLSTIKRKLDTGQYQ-EPWQYVDDV 79 (119)
T ss_dssp HHHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHT--------CTTHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCchhcCCCCchhcc--------CCCHHHHhcCCCCHHHHHHHHhcCCCC-CHHHHHHHH
Confidence 67789999999999997 56999999999985443 788999999999999999999999998 788899999
Q ss_pred HHHHHhhhhhcCCCchHHHHHHHhhchhhhhhHHhhh
Q 000127 1078 REVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVL 1114 (2127)
Q Consensus 1078 RLVWsN~~tyNgdgSEVveLAekLSQiFESrYkKqVL 1114 (2127)
+++|+||..||+.++.+..+|..|...|+..+.+.+.
T Consensus 80 ~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 116 (119)
T 3p1f_A 80 WLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQ 116 (119)
T ss_dssp HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988886654
No 15
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.46 E-value=9.9e-14 Score=141.85 Aligned_cols=107 Identities=21% Similarity=0.244 Sum_probs=96.4
Q ss_pred chHHHHHHHHHHHHHHHhcc-------hhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCCh
Q 000127 998 VPDVIMKQCRKVLRCAAAAD-------EERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSH 1070 (2127)
Q Consensus 998 lSdlImKrCr~VLkeLl~sd-------~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSp 1070 (2127)
.++.+.++|+.||+.++... .+++|..||+. .++++|+.+|++||||+||+.|+..|.|. +.
T Consensus 8 ~~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~----------~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~-s~ 76 (129)
T 2grc_A 8 NPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSR----------KELPEYYELIRKPVDFKKIKERIRNHKYR-SL 76 (129)
T ss_dssp CCHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCT----------TTCHHHHHHCSSCCCHHHHHHHHHTTCCC-SH
T ss_pred CcHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCc----------ccCCCHHHHcCCCCCHHHHHHHHhcCCCC-CH
Confidence 35677999999999999764 58999999875 35789999999999999999999999998 78
Q ss_pred hhhHhhHHHHHHhhhhhcCCCchHHHHHHHhhchhhhhhHHhhhh
Q 000127 1071 EAFLEDVREVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVLT 1115 (2127)
Q Consensus 1071 E~FAEDVRLVWsN~~tyNgdgSEVveLAekLSQiFESrYkKqVLr 1115 (2127)
+.|..||++||.||..||+.++.+..+|..|...|+..+.+....
T Consensus 77 ~~f~~Dv~Li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 121 (129)
T 2grc_A 77 NDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKE 121 (129)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCC
Confidence 889999999999999999999999999999999999988876543
No 16
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.46 E-value=8.3e-14 Score=141.05 Aligned_cols=99 Identities=16% Similarity=0.278 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHHHHH
Q 000127 1003 MKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWH 1082 (2127)
Q Consensus 1003 mKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRLVWs 1082 (2127)
++.|..||+.|..+..+++|.+||+.. .+++|+.+|++||||+||+.|+..|.|. +.+.|.+|+++||.
T Consensus 15 ~~~~~~il~~l~~~~~a~~F~~pvd~~----------~~pdY~~iIk~PmdL~tI~~kl~~~~Y~-s~~~f~~D~~li~~ 83 (121)
T 1e6i_A 15 DAAIQNILTELQNHAAAWPFLQPVNKE----------EVPDYYDFIKEPMDLSTMEIKLESNKYQ-KMEDFIYDARLVFN 83 (121)
T ss_dssp HHHHHHHHHHHHHSTTCGGGSSCCCTT----------TSTTHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCchhhCCCCChh----------hCcCHHHHcCCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHHHH
Confidence 688999999999999999999999872 4789999999999999999999999998 78889999999999
Q ss_pred hhhhhcCCCchHHHHHHHhhchhhhhhHHh
Q 000127 1083 HICTAYSDQSDLLQLAGKLCQNFEVLYKKE 1112 (2127)
Q Consensus 1083 N~~tyNgdgSEVveLAekLSQiFESrYkKq 1112 (2127)
||..||++++.+..+|..|...|+..+.+.
T Consensus 84 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 113 (121)
T 1e6i_A 84 NCRMYNGENTSYYKYANRLEKFFNNKVKEI 113 (121)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999887654
No 17
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.45 E-value=1.2e-13 Score=139.62 Aligned_cols=105 Identities=15% Similarity=0.206 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHH
Q 000127 1000 DVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVRE 1079 (2127)
Q Consensus 1000 dlImKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRL 1079 (2127)
..+-+.|..||+.|...+.+++|..||++ ..+++|..+|++||||+||+.|+..|.|. +.+.|.+|+++
T Consensus 7 ~~l~~~l~~il~~L~~~~~~~~F~~PVd~----------~~~pdY~~iIk~PMDL~tI~~kl~~~~Y~-s~~ef~~Dv~L 75 (117)
T 2i7k_A 7 TPLQEALNQLMRQLQRKDPSAFFSFPVTD----------FIAPGYSMIIKHPMDFSTMKEKIKNNDYQ-SIEELKDNFKL 75 (117)
T ss_dssp HHHHHHHHHHHHHHHTSSGGGTSSSCCCT----------TTSSSHHHHCSCCCCHHHHHHHHTTTSCC-SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccHHhcCCCCc----------cccCCHHHHhCCCCCHHHHHHHHHcCCCC-CHHHHHHHHHH
Confidence 34578999999999999999999999976 34789999999999999999999999999 78889999999
Q ss_pred HHHhhhhhcCCCchHHHHHHHhhchhhhhhHHhhhh
Q 000127 1080 VWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVLT 1115 (2127)
Q Consensus 1080 VWsN~~tyNgdgSEVveLAekLSQiFESrYkKqVLr 1115 (2127)
+|.||..||++++.+..+|..|.+.|+..+...++.
T Consensus 76 i~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~ 111 (117)
T 2i7k_A 76 MCTNAMIYNKPETIYYKAAKKLLHSGMKILSQERLE 111 (117)
T ss_dssp HHHHHHHTSCSSSSHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998888765
No 18
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.42 E-value=3.1e-13 Score=144.63 Aligned_cols=105 Identities=20% Similarity=0.319 Sum_probs=95.2
Q ss_pred ccchHHHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcc--cccCCChhhh
Q 000127 996 TSVPDVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAF--GAYGGSHEAF 1073 (2127)
Q Consensus 996 iSlSdlImKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~--G~Y~GSpE~F 1073 (2127)
..++....++|+.||..|+.++.+++|..||+. .+++|+.+|++||||+||+.|+.. |.|. +++.|
T Consensus 76 ~~l~~~~~~~c~~il~~l~~~~~s~~F~~Pv~~-----------~~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~-s~~ef 143 (184)
T 3o36_A 76 VKLTPIDKRKCERLLLFLYCHEMSLAFQDPVPL-----------TVPDYYKIIKNPMDLSTIKKRLQEDYSMYS-KPEDF 143 (184)
T ss_dssp CCCCHHHHHHHHHHHHHHHHSTTCHHHHSCCCT-----------TSTTHHHHCSSCCCHHHHHHHHHSTTCSCC-SHHHH
T ss_pred cccCHHHHHHHHHHHHHHHhchhhhhhcccccc-----------CCCchhhhcCCCCCHHHHHHHHHhcCCCCC-CHHHH
Confidence 345566789999999999999999999999964 268899999999999999999987 7888 78889
Q ss_pred HhhHHHHHHhhhhhcCCCchHHHHHHHhhchhhhhhHHh
Q 000127 1074 LEDVREVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKE 1112 (2127)
Q Consensus 1074 AEDVRLVWsN~~tyNgdgSEVveLAekLSQiFESrYkKq 1112 (2127)
.+||++||+|+..||+.+++|..+|..|...|+..+++.
T Consensus 144 ~~Dv~li~~Na~~yN~~~s~v~~~a~~L~~~f~~~~~~~ 182 (184)
T 3o36_A 144 VADFRLIFQNCAEFNEPDSEVANAGIKLENYFEELLKNL 182 (184)
T ss_dssp HHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999888764
No 19
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=2e-13 Score=138.34 Aligned_cols=104 Identities=15% Similarity=0.191 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHH
Q 000127 1000 DVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVRE 1079 (2127)
Q Consensus 1000 dlImKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRL 1079 (2127)
..+...|+.||+.|..++.+++|.+||+.. .+++|+.+|++||||+||+.|+..+.|. +.+.|.+|+++
T Consensus 6 ~pl~~~l~~il~~l~~~~~~~~F~~pv~~~----------~~pdY~~iIk~PmdL~tI~~kl~~~~Y~-s~~ef~~D~~l 74 (121)
T 2d9e_A 6 SGFLILLRKTLEQLQEKDTGNIFSEPVPLS----------EVPDYLDHIKKPMDFFTMKQNLEAYRYL-NFDDFEEDFNL 74 (121)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCSSSSCCCTT----------TCTTHHHHCSSCCCHHHHHHHHHTTCCC-SHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCccHhhCCcCCcc----------ccCCHHHHcCCCcCHHHHHHHHhcCCCC-CHHHHHHHHHH
Confidence 345789999999999999999999999873 4789999999999999999999999999 78889999999
Q ss_pred HHHhhhhhcCCCchHHHHHHHhhchhhhhhHHhhh
Q 000127 1080 VWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVL 1114 (2127)
Q Consensus 1080 VWsN~~tyNgdgSEVveLAekLSQiFESrYkKqVL 1114 (2127)
||.||..||++++.+..+|..|.+.|+..+.+.-.
T Consensus 75 i~~Na~~yN~~~s~~~~~A~~L~~~~~~~l~~~~~ 109 (121)
T 2d9e_A 75 IVSNCLKYNAKDTIFYRAAVRLREQGGAVLRQARR 109 (121)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987776543
No 20
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.42 E-value=1.8e-13 Score=137.31 Aligned_cols=101 Identities=17% Similarity=0.232 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHhcc------hhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHh
Q 000127 1002 IMKQCRKVLRCAAAAD------EERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLE 1075 (2127)
Q Consensus 1002 ImKrCr~VLkeLl~sd------~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAE 1075 (2127)
.+++|+.|++.+.... .+++|.+|++. .++++|+.+|++||||+||+.|+..+.|. +++.|..
T Consensus 6 ~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~----------~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~-s~~~f~~ 74 (116)
T 3iu5_A 6 PIAVCHELYNTIRDYKDEQGRLLCELFIRAPKR----------RNQPDYYEVVSQPIDLMKIQQKLKMEEYD-DVNLLTA 74 (116)
T ss_dssp HHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCG----------GGCHHHHHHCSSCCCHHHHHHHHHTTCCC-SHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCc----------ccCCCHHHHhCCCCCHHHHHHHHHcCCCC-CHHHHHH
Confidence 4899999999999764 48899998865 35789999999999999999999999998 7888999
Q ss_pred hHHHHHHhhhhhcCCCchHHHHHHHhhchhhhhhHHhh
Q 000127 1076 DVREVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEV 1113 (2127)
Q Consensus 1076 DVRLVWsN~~tyNgdgSEVveLAekLSQiFESrYkKqV 1113 (2127)
|++++|.||..||++++.+..+|..|...|+..+.+.+
T Consensus 75 D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~l~ 112 (116)
T 3iu5_A 75 DFQLLFNNAKSYYKPDSPEYKAACKLWDLYLRTRNEFV 112 (116)
T ss_dssp HHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888664
No 21
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.37 E-value=6.5e-13 Score=134.13 Aligned_cols=105 Identities=19% Similarity=0.267 Sum_probs=95.2
Q ss_pred chHHHHHHHHHHHHHHHhcch------hhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChh
Q 000127 998 VPDVIMKQCRKVLRCAAAADE------ERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHE 1071 (2127)
Q Consensus 998 lSdlImKrCr~VLkeLl~sd~------s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE 1071 (2127)
.++.+.+.|+.+|..+..... +++|.+|++. ..+++|+.+|++||||+||+.|+..+.|. +.+
T Consensus 5 ~p~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~----------~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~-s~~ 73 (120)
T 3ljw_A 5 SPAYLKEILEQLLEAIVVATNPSGRLISELFQKLPSK----------VQYPDYYAIIKEPIDLKTIAQRIQNGSYK-SIH 73 (120)
T ss_dssp CHHHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCT----------TTCHHHHHHCSSCCCHHHHHHHHHHTCCC-SHH
T ss_pred cHHHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCc----------ccCCChHHHcCCCCCHHHHHHHHccCCCC-CHH
Confidence 467788999999999997776 8899998865 35789999999999999999999999998 788
Q ss_pred hhHhhHHHHHHhhhhhcCCCchHHHHHHHhhchhhhhhHHhh
Q 000127 1072 AFLEDVREVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEV 1113 (2127)
Q Consensus 1072 ~FAEDVRLVWsN~~tyNgdgSEVveLAekLSQiFESrYkKqV 1113 (2127)
.|..||++||.||..||+.++.+..+|..|...|+..+.+..
T Consensus 74 ~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~i~ 115 (120)
T 3ljw_A 74 AMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIFYMKKAEIE 115 (120)
T ss_dssp HHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 899999999999999999999999999999999999888654
No 22
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.37 E-value=6.3e-13 Score=134.87 Aligned_cols=101 Identities=16% Similarity=0.236 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHh------cchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhH
Q 000127 1001 VIMKQCRKVLRCAAA------ADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFL 1074 (2127)
Q Consensus 1001 lImKrCr~VLkeLl~------sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FA 1074 (2127)
.+-++|+.||+.+.. +..+++|..||+. .++++|..+|++||||+||+.|+..+.|. +++.|.
T Consensus 15 ~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~----------~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~-~~~~f~ 83 (124)
T 3mb4_A 15 PMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSR----------SELPDYYLTIKKPMDMEKIRSHMMANKYQ-DIDSMV 83 (124)
T ss_dssp HHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCT----------TTCHHHHHHCSSCCCHHHHHHHHHTTCCC-SHHHHH
T ss_pred HHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCc----------cccCCHHHHcCCCCCHHHHHHHHHcCCCC-CHHHHH
Confidence 347899999999997 4557999999876 34789999999999999999999999998 788899
Q ss_pred hhHHHHHHhhhhhcCCCchHHHHHHHhhchhhhhhHHh
Q 000127 1075 EDVREVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKE 1112 (2127)
Q Consensus 1075 EDVRLVWsN~~tyNgdgSEVveLAekLSQiFESrYkKq 1112 (2127)
.|+++||.||..||++++.+..+|..|...|+..|++.
T Consensus 84 ~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l 121 (124)
T 3mb4_A 84 EDFVMMFNNACTYNEPESLIYKDALVLHKVLLETRRDL 121 (124)
T ss_dssp HHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887754
No 23
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.37 E-value=7.1e-13 Score=136.07 Aligned_cols=102 Identities=19% Similarity=0.252 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHHHH
Q 000127 1002 IMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVW 1081 (2127)
Q Consensus 1002 ImKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRLVW 1081 (2127)
+...|+.||+.|..++.+++|..||+.. .+++|+.+|++||||+||+.|+..+.|. +.+.|.+|+++||
T Consensus 14 l~~~l~~il~~l~~~~~~~~F~~pv~~~----------~~pdY~~iI~~PmdL~tI~~kl~~~~Y~-~~~~f~~D~~li~ 82 (135)
T 3rcw_A 14 LTVLLRSVLDQLQDKDPARIFAQPVSLK----------EVPDYLDHIKHPMDFATMRKRLEAQGYK-NLHEFEEDFDLII 82 (135)
T ss_dssp HHHHHHHHHHHHHHTCTTCSSSSCCCTT----------TCTTHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcchhhcCCCChh----------hcCCHHHHhCCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHHH
Confidence 5789999999999999999999999873 4789999999999999999999999998 7888999999999
Q ss_pred HhhhhhcCCCchHHHHHHHhhchhhhhhHHhhh
Q 000127 1082 HHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVL 1114 (2127)
Q Consensus 1082 sN~~tyNgdgSEVveLAekLSQiFESrYkKqVL 1114 (2127)
.||..||+.++.++.+|..|...|+..+.+.-.
T Consensus 83 ~Na~~yN~~~s~~~~~A~~L~~~~~~~~~~~~~ 115 (135)
T 3rcw_A 83 DNCMKYNARDTVFYRAAVRLRDQGGVVLRQARR 115 (135)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888776543
No 24
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.37 E-value=9.4e-13 Score=133.80 Aligned_cols=106 Identities=17% Similarity=0.209 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHHHHHHhcch------hhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhh
Q 000127 999 PDVIMKQCRKVLRCAAAADE------ERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEA 1072 (2127)
Q Consensus 999 SdlImKrCr~VLkeLl~sd~------s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~ 1072 (2127)
++.+.++|+.+++.+..... +++|.+||+.. ++++|+.+|++||||+||+.|+..+.|. +++.
T Consensus 7 ~~~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~----------~~pdY~~iIk~PmdL~tI~~kl~~~~Y~-s~~~ 75 (126)
T 3mqm_A 7 AARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKK----------KNADYYEKISDPLDLITIEKQILTGYYK-TVEA 75 (126)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGG----------GCTTHHHHCSSCCCHHHHHHHHHHTCCC-SHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCcc----------cCCCHHHHcCCCCCHHHHHHHHHcCCCC-CHHH
Confidence 46678999999999997654 88898888762 5789999999999999999999999998 7888
Q ss_pred hHhhHHHHHHhhhhhcCCCchHHHHHHHhhchhhhhhHHhhhh
Q 000127 1073 FLEDVREVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVLT 1115 (2127)
Q Consensus 1073 FAEDVRLVWsN~~tyNgdgSEVveLAekLSQiFESrYkKqVLr 1115 (2127)
|.+|++++|.||..||++++.+..+|..|...|+..+.+..-.
T Consensus 76 f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~~ 118 (126)
T 3mqm_A 76 FDADMLKVFRNAEKYYGRKSPVGRDVCRLRKAYYNARHEASAQ 118 (126)
T ss_dssp HHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887765543
No 25
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.36 E-value=8.4e-13 Score=134.08 Aligned_cols=103 Identities=20% Similarity=0.245 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHHHH
Q 000127 1002 IMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVW 1081 (2127)
Q Consensus 1002 ImKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRLVW 1081 (2127)
+.+.|..||+.|..++.+++|..||+.. .+++|.++|++||||+||+.|+..|.|. +++.|.+|++++|
T Consensus 14 ~~~~l~~il~~l~~~~~~~~F~~pv~~~----------~~pdY~~iIk~PmdL~tI~~kl~~~~Y~-~~~~f~~D~~li~ 82 (123)
T 3hme_A 14 IQQLLEHFLRQLQRKDPHGFFAFPVTDA----------IAPGYSMIIKHPMDFGTMKDKIVANEYK-SVTEFKADFKLMC 82 (123)
T ss_dssp HHHHHHHHHHHHHTTCTTCSSSSCCCTT----------TSTTHHHHCSSCCCHHHHHHHHHTTCCC-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHhhcCCCChh----------hccCHHHHCCCCCCHHHHHHHhccCCCC-CHHHHHHHHHHHH
Confidence 4778999999999999999999999863 4789999999999999999999999998 7888999999999
Q ss_pred HhhhhhcCCCchHHHHHHHhhchhhhhhHHhhhh
Q 000127 1082 HHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVLT 1115 (2127)
Q Consensus 1082 sN~~tyNgdgSEVveLAekLSQiFESrYkKqVLr 1115 (2127)
.||..||++++.+..+|..|...|+..+.+.-+.
T Consensus 83 ~Na~~yN~~~s~~~~~A~~L~~~~~~~~~~~~~~ 116 (123)
T 3hme_A 83 DNAMTYNRPDTVYYKLAKKILHAGFKMMSKERLL 116 (123)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888877765443
No 26
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.36 E-value=6.2e-13 Score=140.64 Aligned_cols=103 Identities=17% Similarity=0.230 Sum_probs=94.3
Q ss_pred chHHHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhH
Q 000127 998 VPDVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDV 1077 (2127)
Q Consensus 998 lSdlImKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDV 1077 (2127)
+++...+.|+.||+.|..+..+++|.+||+.. ++++|+.+|++||||+||+.|+..+.|. +.+.|.+||
T Consensus 69 l~~~~~~~l~~il~~l~~~~~~~~F~~pv~~~----------~~pdY~~~I~~PmdL~tI~~kl~~~~Y~-s~~~f~~D~ 137 (174)
T 2ri7_A 69 LTEKDYEGLKRVLRSLQAHKMAWPFLEPVDPN----------DAPDYYGVIKEPMDLATMEERVQRRYYE-KLTEFVADM 137 (174)
T ss_dssp CCHHHHHHHHHHHHHHHTSGGGTTTSSCCCTT----------TCHHHHHHCSSCCCHHHHHHHHHTTCCC-BHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhhhhhhhhcCCCcc----------cCCchHHHhCCcCCHHHHHHHHHcCCCC-CHHHHHHHH
Confidence 34556889999999999999999999999872 4789999999999999999999999998 788899999
Q ss_pred HHHHHhhhhhcCCCchHHHHHHHhhchhhhhhHH
Q 000127 1078 REVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKK 1111 (2127)
Q Consensus 1078 RLVWsN~~tyNgdgSEVveLAekLSQiFESrYkK 1111 (2127)
++||+|+..||+.++.+..+|..|...|+..+++
T Consensus 138 ~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~ 171 (174)
T 2ri7_A 138 TKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKG 171 (174)
T ss_dssp HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999887654
No 27
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.34 E-value=1.4e-12 Score=133.86 Aligned_cols=105 Identities=12% Similarity=0.148 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHhcch------hhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhh
Q 000127 1000 DVIMKQCRKVLRCAAAADE------ERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAF 1073 (2127)
Q Consensus 1000 dlImKrCr~VLkeLl~sd~------s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~F 1073 (2127)
+-+.++|+.+++.+..... +++|.+||+. .++++|+.+|++||||+||+.|+..+.|. +++.|
T Consensus 16 ~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~----------~~~PdY~~iIk~PMdL~tI~~kL~~~~Y~-s~~ef 84 (130)
T 3k2j_A 16 ENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSK----------KKYPDYYQQIKMPISLQQIRTKLKNQEYE-TLDHL 84 (130)
T ss_dssp HHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCT----------TTCHHHHHHCSSCCCHHHHHHHHHTTCCS-SHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCCh----------hhCccHHHHcCCCCCHHHHHHHHhcCCCC-CHHHH
Confidence 4578999999999995544 8889998865 35789999999999999999999999998 78889
Q ss_pred HhhHHHHHHhhhhhcCCCchHHHHHHHhhchhhhhhHHhhhh
Q 000127 1074 LEDVREVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVLT 1115 (2127)
Q Consensus 1074 AEDVRLVWsN~~tyNgdgSEVveLAekLSQiFESrYkKqVLr 1115 (2127)
..|+++||.||..||++++.|..+|..|...|+..+.++...
T Consensus 85 ~~Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 126 (130)
T 3k2j_A 85 ECDLNLMFENAKRYNVPNSAIYKRVLKLQQVMQAKKKELARR 126 (130)
T ss_dssp HHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999988876543
No 28
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.31 E-value=2.9e-12 Score=138.69 Aligned_cols=101 Identities=19% Similarity=0.199 Sum_probs=89.6
Q ss_pred hHHHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccc--cCCchhhHHhhhccc---ccCCChhhh
Q 000127 999 PDVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVS--RPLDFRTIDLRLAFG---AYGGSHEAF 1073 (2127)
Q Consensus 999 SdlImKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIk--RPMDLGTIDlRLa~G---~Y~GSpE~F 1073 (2127)
+...++.|+.||..|..++.+|+|.+||++ +|+.+|+ +||||+||+.|+..+ .|. +++.|
T Consensus 74 ~~~~~~~c~~iL~~l~~~~~s~pF~~pV~~--------------~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~-s~~eF 138 (189)
T 2ro1_A 74 SPANQRKCERVLLALFCHEPCRPLHQLATD--------------STFSLDQPGGTLDLTLIRARLQEKLSPPYS-SPQEF 138 (189)
T ss_dssp CHHHHHHHHHHHHHHHHSTTHHHHHSCSCC--------------TTCSSSCSSCCCCHHHHHHHHHTSSSSCCS-CHHHH
T ss_pred CHHHHHHHHHHHhhcccCccchhhcCCCCh--------------hhhccccCCCcccHHHHHHHHhcCCCcccC-CHHHH
Confidence 344478999999999999999999999974 3888887 799999999999999 888 78889
Q ss_pred HhhHHHHHHhhhhhcCCCchHHHHHHHhhchhhhhhHHhhhh
Q 000127 1074 LEDVREVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVLT 1115 (2127)
Q Consensus 1074 AEDVRLVWsN~~tyNgdgSEVveLAekLSQiFESrYkKqVLr 1115 (2127)
++||++||+|+..||+ ++.+..+|..|...|+..|++.+-.
T Consensus 139 ~~Dv~Lif~N~~~yN~-~s~~~~~a~~L~~~Fe~~~~~~~~~ 179 (189)
T 2ro1_A 139 AQDVGRMFKQFNKLTE-DKADVQSIIGLQRFFETRMNEAFGD 179 (189)
T ss_dssp HHHHHHHHHHHHHHCC-SSCSSHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999999999995 6778899999999999998877643
No 29
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.28 E-value=5.6e-12 Score=133.38 Aligned_cols=106 Identities=17% Similarity=0.186 Sum_probs=93.2
Q ss_pred cchHHHHHHHHHHHHHHH-----hcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChh
Q 000127 997 SVPDVIMKQCRKVLRCAA-----AADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHE 1071 (2127)
Q Consensus 997 SlSdlImKrCr~VLkeLl-----~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE 1071 (2127)
+.++. ...|..||+.++ .+..+++|..||+.. .+++|+.+|++||||+||+.|+..+.|. +++
T Consensus 22 ~~~d~-~~~l~~iL~~i~~~kl~~~~~s~~F~~PVd~~----------~~PdY~~iIk~PMDL~tI~~kl~~~~Y~-s~~ 89 (158)
T 3uv4_A 22 SMDDD-QVAFSFILDNIVTQKMMAVPDSWPFHHPVNKK----------FVPDYYKVIVNPMDLETIRKNISKHKYQ-SRE 89 (158)
T ss_dssp CCSHH-HHHHHHHHHHHHHHTTTTSTTCGGGTSCCCTT----------TSTTHHHHCSSCCCHHHHHHHHHTTCCS-SHH
T ss_pred cCCch-HHHHHHHHHHHHHHHHHcCCCchhhcCcCChh----------hcccHHHHcCCccCHHHHHHHHHcCCCC-CHH
Confidence 44455 778888888877 368899999999873 3789999999999999999999999998 788
Q ss_pred hhHhhHHHHHHhhhhhcCCCchHHHHHHHhhchhhhhhHHhhh
Q 000127 1072 AFLEDVREVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVL 1114 (2127)
Q Consensus 1072 ~FAEDVRLVWsN~~tyNgdgSEVveLAekLSQiFESrYkKqVL 1114 (2127)
.|..||++||.||..||++++.+..+|..|...|+..+.+...
T Consensus 90 ef~~Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~~~~~l~e~~~ 132 (158)
T 3uv4_A 90 SFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDE 132 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999887776543
No 30
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.27 E-value=6e-12 Score=137.18 Aligned_cols=104 Identities=16% Similarity=0.275 Sum_probs=91.3
Q ss_pred chHHHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcc---cccCCChhhhH
Q 000127 998 VPDVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAF---GAYGGSHEAFL 1074 (2127)
Q Consensus 998 lSdlImKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~---G~Y~GSpE~FA 1074 (2127)
++....++|+.||..|+.++.+++|..||+. ++++|..+|++||||+||+.|+.. |.|. +++.|.
T Consensus 78 ls~~~~~~c~~il~~l~~~~~s~~F~~Pv~~-----------~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~-s~~~f~ 145 (207)
T 3u5n_A 78 LSPVDQRKCERLLLYLYCHELSIEFQEPVPA-----------SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQ-IPDDFV 145 (207)
T ss_dssp SCHHHHHHHHHHHHHHHTSTTCGGGSSCCCT-----------TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCS-SHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccchhhhhccCCh-----------hhccHhHHhCCccCHHHHHHHHhcccCCCcC-CHHHHH
Confidence 4456689999999999999999999999964 368899999999999999999997 7888 788899
Q ss_pred hhHHHHHHhhhhhcC-----------------CCchHHHHHHHhhchhhhhhHHhh
Q 000127 1075 EDVREVWHHICTAYS-----------------DQSDLLQLAGKLCQNFEVLYKKEV 1113 (2127)
Q Consensus 1075 EDVRLVWsN~~tyNg-----------------dgSEVveLAekLSQiFESrYkKqV 1113 (2127)
+||++||+|+..||+ ..++|..+|..|...|+..+.+.+
T Consensus 146 ~Dv~li~~Na~~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~ 201 (207)
T 3u5n_A 146 ADVRLIFKNCERFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIY 201 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999 777888888888888887776554
No 31
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=1.7e-12 Score=126.79 Aligned_cols=56 Identities=46% Similarity=1.236 Sum_probs=49.8
Q ss_pred cCccccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCcccccCCCC
Q 000127 1152 WDEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSGNCK 1207 (2127)
Q Consensus 1152 w~dd~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~~c~ 1207 (2127)
.++..|.+|+...+.+.||+||.|+++||++||.|||..+|+|+|||+.|+.+.+.
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~~~ 69 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAECK 69 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHHHHS
T ss_pred cCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCcccc
Confidence 34568999998777788999999999999999999999999999999999876543
No 32
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.23 E-value=1.7e-11 Score=125.53 Aligned_cols=98 Identities=15% Similarity=0.205 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHHHH
Q 000127 1002 IMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVW 1081 (2127)
Q Consensus 1002 ImKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRLVW 1081 (2127)
+-..|+.++..+..++.+++|..||++. ++++|..+|++||||+||+.|+..|.|. +++.|..|+++||
T Consensus 11 l~~~l~~il~~l~~~~~~~~F~~pv~~~----------~~pdY~~iI~~PmdL~tI~~kl~~~~Y~-~~~~f~~D~~li~ 79 (130)
T 3dai_A 11 LRIFLRNVTHRLAIDKRFRVFTKPVDPD----------EVPDYVTVIKQPMDLSSVISKIDLHKYL-TVKDYLRDIDLIC 79 (130)
T ss_dssp HHHHHHHHHHHHHTSGGGGGGSSCCCTT----------TCTTHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccHhhcCCCChh----------hcCCHHHHcCCCCCHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Confidence 4567888888888999999999999883 4789999999999999999999999998 7888999999999
Q ss_pred HhhhhhcCCCchH----HHHHHHhhchhhhhhH
Q 000127 1082 HHICTAYSDQSDL----LQLAGKLCQNFEVLYK 1110 (2127)
Q Consensus 1082 sN~~tyNgdgSEV----veLAekLSQiFESrYk 1110 (2127)
.||..||++++.+ ..+|..|.+.+.....
T Consensus 80 ~Na~~yN~~~s~~~~~i~~~A~~L~~~~~~~i~ 112 (130)
T 3dai_A 80 SNALEYNPDRDPGDRLIRHRACALRDTAYAIIK 112 (130)
T ss_dssp HHHHHHCCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998766 5556666555554443
No 33
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.23 E-value=1.1e-11 Score=129.41 Aligned_cols=101 Identities=14% Similarity=0.205 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHhcch-------hhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHh
Q 000127 1003 MKQCRKVLRCAAAADE-------ERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLE 1075 (2127)
Q Consensus 1003 mKrCr~VLkeLl~sd~-------s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAE 1075 (2127)
-.+|+.+|+.++.... +++|..|++. ..+++|+.+|++||||+||+.|+..+.|. +.+.|..
T Consensus 26 ~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~----------~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~-s~~ef~~ 94 (150)
T 3tlp_A 26 KQRMKILFNVVLEAREPGSGRRLCDLFMVKPSK----------KDYPDYYKIILEPMDLKIIEHNIRNDKYA-GEEGMIE 94 (150)
T ss_dssp HHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCT----------TTCHHHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCcccHHhcCCCch----------hhCcCHHHHhCCCCCHHHHHHHHhcCCCC-CHHHHHH
Confidence 5688899999985544 7888877765 35789999999999999999999999998 7888999
Q ss_pred hHHHHHHhhhhhcCCCchHHHHHHHhhchhhhhhHHhhh
Q 000127 1076 DVREVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVL 1114 (2127)
Q Consensus 1076 DVRLVWsN~~tyNgdgSEVveLAekLSQiFESrYkKqVL 1114 (2127)
||++||.||..||+.++.|..+|..|...|+..+.+...
T Consensus 95 D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~ 133 (150)
T 3tlp_A 95 DMKLMFRNARHYNEEGSQVYNDAHILEKLLKEKRKELGP 133 (150)
T ss_dssp HHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999988876653
No 34
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.22 E-value=3.5e-12 Score=111.66 Aligned_cols=49 Identities=45% Similarity=1.225 Sum_probs=46.0
Q ss_pred ccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1156 VCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1156 ~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
.|.+|++..+++.||+||.|+++||++|++|||.++|+|+|+|+.|...
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 5999998888889999999999999999999999999999999999764
No 35
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=99.20 E-value=8.1e-12 Score=115.17 Aligned_cols=52 Identities=38% Similarity=1.082 Sum_probs=46.6
Q ss_pred CccccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCcccccCCCC
Q 000127 1153 DEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSGNCK 1207 (2127)
Q Consensus 1153 ~dd~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~~c~ 1207 (2127)
+++.|.+|+ ++++||+||.|+++||++|+.|||..+|.|+|+|+.|..+...
T Consensus 7 ~~~~C~vC~---~~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~~ 58 (66)
T 1xwh_A 7 NEDECAVCR---DGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQ 58 (66)
T ss_dssp CCCSBSSSS---CCSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCCC
T ss_pred CCCCCccCC---CCCCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCcccc
Confidence 567899997 4679999999999999999999999999999999999877443
No 36
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.19 E-value=2.3e-11 Score=137.05 Aligned_cols=103 Identities=14% Similarity=0.183 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHH
Q 000127 1000 DVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVRE 1079 (2127)
Q Consensus 1000 dlImKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRL 1079 (2127)
..+.+.|+.||..|..++.+++|..||+.. .+++|+.+|++||||+||+.|+..|.|. +++.|..|+++
T Consensus 13 ~~l~~~l~~il~~l~~~~~~~~F~~pv~~~----------~~pdY~~iI~~PmdL~tI~~kl~~~~Y~-~~~~f~~D~~l 81 (265)
T 3uv5_A 13 VTLSSILESIINDMRDLPNTYPFHTPVNAK----------VVKDYYKIITRPMDLQTLRENVRKRLYP-SREEFREHLEL 81 (265)
T ss_dssp HHHHHHHHHHHHHHHTSTTCGGGTSCCCTT----------TSTTHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCchhhhCCCChh----------hcCCHHHHhCCCCcHHHHHHHHHcCCCC-CHHHHHHHHHH
Confidence 346889999999999999999999999873 3789999999999999999999999998 78889999999
Q ss_pred HHHhhhhhcCCCchHHHHHHHhhchhhhhhHHhh
Q 000127 1080 VWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEV 1113 (2127)
Q Consensus 1080 VWsN~~tyNgdgSEVveLAekLSQiFESrYkKqV 1113 (2127)
+|+||..||+.++.|..+|..|...|+..+.+..
T Consensus 82 i~~Na~~yN~~~s~i~~~A~~l~~~~~~~~~~~~ 115 (265)
T 3uv5_A 82 IVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKE 115 (265)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHhhhhhcCCCCChHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998777643
No 37
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=4e-11 Score=123.55 Aligned_cols=97 Identities=15% Similarity=0.224 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHH
Q 000127 1000 DVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVRE 1079 (2127)
Q Consensus 1000 dlImKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRL 1079 (2127)
..+-..|+.||+.|..++.+++|..| +++|+.+|++||||+||+.|+..+.|. +++.|.+|+++
T Consensus 11 ~~L~~~~~~il~~l~~~~~~~~F~~P---------------~pdY~~iIk~PmDL~tI~~kl~~~~Y~-s~~~f~~D~~L 74 (131)
T 2dkw_A 11 RELRLFLRDVTKRLATDKRFNIFSKP---------------VSDYLEVIKEPMDLSTVITKIDKHNYL-TAKDFLKDIDL 74 (131)
T ss_dssp HHHHHHHHHHHHHHHHSGGGCTTSSC---------------CSSCTTSCSSCCCHHHHHHHHHTTCCC-SSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCccchhhcCc---------------CccHHhHcCCCcCHHHHHHHHcCCCCC-CHHHHHHHHHH
Confidence 44577899999999999999999998 468999999999999999999999999 67789999999
Q ss_pred HHHhhhhhcCCCch----HHHHHHHhhchhhhhhHHh
Q 000127 1080 VWHHICTAYSDQSD----LLQLAGKLCQNFEVLYKKE 1112 (2127)
Q Consensus 1080 VWsN~~tyNgdgSE----VveLAekLSQiFESrYkKq 1112 (2127)
||.||..||++++. |...|..|.+.+.....+.
T Consensus 75 i~~Na~~yN~~~s~~~~~i~~~A~~L~~~~~~~l~~~ 111 (131)
T 2dkw_A 75 ICSNALEYNPDKDPGDKIIRHRACTLKDTAHAIIAAE 111 (131)
T ss_dssp HHHHHHHSCCCSSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999885 4677777777666544433
No 38
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=99.18 E-value=1.4e-11 Score=112.33 Aligned_cols=50 Identities=46% Similarity=1.159 Sum_probs=45.5
Q ss_pred cCccccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1152 WDEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1152 w~dd~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
.++..|.+|+ ++++||+||.|+++||++|+.|||.++|.|+|+|+.|...
T Consensus 7 ~~~~~C~vC~---~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCK---DGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTC---CCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCC---CCCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 3456899997 4689999999999999999999999999999999999876
No 39
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.17 E-value=2.2e-11 Score=118.73 Aligned_cols=50 Identities=28% Similarity=0.802 Sum_probs=45.4
Q ss_pred cCccccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1152 WDEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1152 w~dd~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
.+++.|.+|+ .+++||+||.|+++||++|+.|||.++|+|+|+|+.|...
T Consensus 23 ~n~~~C~vC~---~~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQ---KPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSC---SSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcC---CCCCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 4566899998 4578999999999999999999999999999999999876
No 40
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.17 E-value=2.3e-11 Score=139.09 Aligned_cols=102 Identities=14% Similarity=0.191 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHH
Q 000127 1000 DVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVRE 1079 (2127)
Q Consensus 1000 dlImKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRL 1079 (2127)
..+...|..||+.|..++.+++|..||+.. .+++|+.+|++||||+||+.|+..+.|. +...|.+|+++
T Consensus 46 ~~l~~~~~~il~~l~~~~~a~~F~~pV~~~----------~~pdY~~iIk~PmDL~tIk~kl~~~~Y~-s~~~f~~D~~l 114 (292)
T 3aad_A 46 VTLSSILESIINDMRDLPNTYPFHTPVNAK----------VVKDYYKIITRPMDLQTLRENVRKRLYP-SREEFREHLEL 114 (292)
T ss_dssp HHHHHHHHHHHHHHSSSTTCGGGSSSCCTT----------TSTTHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcchhhcCCCCch----------hcccHHHHcCCcCCHHHHHHHhhCCCcC-CHHHHHHHHHH
Confidence 346778999999999999999999999873 3789999999999999999999999998 68889999999
Q ss_pred HHHhhhhhcCCCchHHHHHHHhhchhhhhhHHh
Q 000127 1080 VWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKE 1112 (2127)
Q Consensus 1080 VWsN~~tyNgdgSEVveLAekLSQiFESrYkKq 1112 (2127)
+|.||..||+.++.+..+|..|...|+..+.+.
T Consensus 115 i~~Na~~yN~~~s~i~~~A~~L~~~~~~~~~~~ 147 (292)
T 3aad_A 115 IVKNSATYNGPKHSLTQISQSMLDLCDEKLKEK 147 (292)
T ss_dssp HHHHHHHHTCSSSHHHHHHTHHHHTTTTTGGGS
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHhhhhcc
Confidence 999999999999999999999999888776643
No 41
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=99.15 E-value=1.4e-11 Score=114.34 Aligned_cols=50 Identities=32% Similarity=0.687 Sum_probs=45.0
Q ss_pred cCccccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1152 WDEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1152 w~dd~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
.....|.+|+ ++++||+||.|+++||++||+|||..+|.|+|||+.|...
T Consensus 10 ~~~~~C~vC~---~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCG---DGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTS---CCTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCC---CCCeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 3456799997 5678999999999999999999999999999999999865
No 42
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=2.7e-11 Score=115.30 Aligned_cols=54 Identities=46% Similarity=1.142 Sum_probs=48.3
Q ss_pred CCcCcc--ccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCC-CccCccccc
Q 000127 1150 APWDEG--VCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEG-NWYCPPCLS 1203 (2127)
Q Consensus 1150 ~~w~dd--~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL~~VPeG-dW~CP~Cv~ 1203 (2127)
..|.+. .|.+|++..+++.||+||.|+++||++||+|||..+|+| +|||+.|..
T Consensus 20 ~~w~C~~c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 20 PEKKCHSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSSCCSSSSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCeECCCCCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 446543 688999888899999999999999999999999999999 999999974
No 43
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.12 E-value=2.1e-11 Score=109.08 Aligned_cols=48 Identities=46% Similarity=1.161 Sum_probs=43.9
Q ss_pred CccccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccccc
Q 000127 1153 DEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLS 1203 (2127)
Q Consensus 1153 ~dd~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~ 1203 (2127)
++..|.+|+. .+.||+||.|+++||++|+.|||..+|+|+|+|+.|..
T Consensus 8 ~~~~C~vC~~---~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRK---SGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCC---SSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCC---CCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 4568999984 57999999999999999999999999999999999974
No 44
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=99.11 E-value=2.7e-11 Score=113.28 Aligned_cols=55 Identities=44% Similarity=1.096 Sum_probs=48.7
Q ss_pred CCcCcc--ccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCC-CccCcccccC
Q 000127 1150 APWDEG--VCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEG-NWYCPPCLSG 1204 (2127)
Q Consensus 1150 ~~w~dd--~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL~~VPeG-dW~CP~Cv~~ 1204 (2127)
..|.+. .|.+|++..+++.||+||.|+++||++||+|||.++|+| +|+|+.|...
T Consensus 12 ~~w~C~~C~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 12 VNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp TTSCCTTTSBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCeECCCCCCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 456554 568888888899999999999999999999999999999 9999999854
No 45
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=99.09 E-value=2.3e-11 Score=111.22 Aligned_cols=55 Identities=29% Similarity=0.931 Sum_probs=47.4
Q ss_pred CcCccccccccCC--CCCCCeEEecCCCCCCcccccCCCCCC--C-CCCCccCcccccCC
Q 000127 1151 PWDEGVCKVCGID--KDDDNVLLCDTCDSGYHTYCLTPPLTR--V-PEGNWYCPPCLSGN 1205 (2127)
Q Consensus 1151 ~w~dd~CkVCg~~--~d~geLLlCD~CD~aYHl~CL~PPL~~--V-PeGdW~CP~Cv~~~ 1205 (2127)
+.++..|.+|+.. .+.+.||+||.|+++||++|+.|||.. + |+|+|||+.|....
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 3456789999876 345899999999999999999999987 4 99999999998763
No 46
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=99.08 E-value=4.3e-11 Score=108.30 Aligned_cols=49 Identities=45% Similarity=1.131 Sum_probs=44.8
Q ss_pred CccccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1153 DEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1153 ~dd~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
++..|.+|+. ++.||+||.|+++||++|+.|||..+|.|+|+|+.|...
T Consensus 4 ~~~~C~vC~~---~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 4 HEDFCSVCRK---SGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCSSCTTTCC---CSSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCcCCCC---CCcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 4578999984 579999999999999999999999999999999999765
No 47
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=99.07 E-value=4.3e-11 Score=109.07 Aligned_cols=49 Identities=41% Similarity=1.111 Sum_probs=44.3
Q ss_pred CccccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1153 DEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1153 ~dd~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
++..|.+|+. +++||+||.|+++||++|+.|||.++|+|+|+|+.|...
T Consensus 10 ~~~~C~vC~~---~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 10 HQDYCEVCQQ---GGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCSSCTTTSC---CSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCccCCC---CCcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 3468999974 689999999999999999999999999999999999764
No 48
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=99.06 E-value=6.8e-11 Score=112.71 Aligned_cols=54 Identities=44% Similarity=1.124 Sum_probs=47.6
Q ss_pred CCcCcc--ccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCC-ccCccccc
Q 000127 1150 APWDEG--VCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGN-WYCPPCLS 1203 (2127)
Q Consensus 1150 ~~w~dd--~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL~~VPeGd-W~CP~Cv~ 1203 (2127)
..|.+. .|.+|++..+++.||+||.|+++||++||.|||..+|+|+ |||+.|+.
T Consensus 20 ~~W~C~~C~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 20 VNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TTSCCTTTSBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCCCCCCCcCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 346554 5788888888899999999999999999999999999999 99999974
No 49
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.04 E-value=5e-11 Score=115.69 Aligned_cols=51 Identities=29% Similarity=0.705 Sum_probs=45.4
Q ss_pred ccccccccCCCC--CCCeEEecCCCCCCcccccCCCCCC----CCCCCccCcccccC
Q 000127 1154 EGVCKVCGIDKD--DDNVLLCDTCDSGYHTYCLTPPLTR----VPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1154 dd~CkVCg~~~d--~geLLlCD~CD~aYHl~CL~PPL~~----VPeGdW~CP~Cv~~ 1204 (2127)
+..|.+|++... .+.||+||.|+++||++|+.|||.. +|.|+|||+.|+..
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~ 72 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQ 72 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccch
Confidence 458999987654 4789999999999999999999985 99999999999765
No 50
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.03 E-value=3e-10 Score=128.10 Aligned_cols=91 Identities=16% Similarity=0.204 Sum_probs=82.6
Q ss_pred HHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHHHHHhhhhhcCCCc
Q 000127 1013 AAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICTAYSDQS 1092 (2127)
Q Consensus 1013 Ll~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRLVWsN~~tyNgdgS 1092 (2127)
+..+..+++|..||+.. .+++|+.+|++||||+||+.|+..|.|. ++..|..||++||.||..||+.++
T Consensus 149 l~~~~~~~~F~~pv~~~----------~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~-~~~~f~~D~~lif~Na~~yN~~~s 217 (265)
T 3uv5_A 149 MMAVPDSWPFHHPVNKK----------FVPDYYKVIVNPMDLETIRKNISKHKYQ-SRESFLDDVNLILANSVKYNGPES 217 (265)
T ss_dssp TTTSTTCGGGTSCCCTT----------TSTTHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHhhhhhHHHhCCCChh----------HhCcHHHHhCCcccHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHHHHCCCCC
Confidence 55788899999999873 3789999999999999999999999998 788899999999999999999999
Q ss_pred hHHHHHHHhhchhhhhhHHhhh
Q 000127 1093 DLLQLAGKLCQNFEVLYKKEVL 1114 (2127)
Q Consensus 1093 EVveLAekLSQiFESrYkKqVL 1114 (2127)
.+..+|..|...|+..+.+..-
T Consensus 218 ~~~~~A~~l~~~~~~~~~~~~~ 239 (265)
T 3uv5_A 218 QYTKTAQEIVNVCYQTLTEYDE 239 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988776543
No 51
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=98.99 E-value=8.2e-11 Score=118.41 Aligned_cols=57 Identities=44% Similarity=1.119 Sum_probs=49.2
Q ss_pred CCCCcCcc---ccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1148 PKAPWDEG---VCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1148 Pr~~w~dd---~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
+...|.+. .|.+|+...+++.||+||.|+++||++||+|||..+|+|+|||+.|...
T Consensus 49 ~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 49 KTYKWQCIECKSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWEL 108 (114)
T ss_dssp HHTTCCCGGGCCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCccCccccCccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccch
Confidence 34568765 4667777777899999999999999999999999999999999999754
No 52
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=98.99 E-value=1.5e-10 Score=126.22 Aligned_cols=51 Identities=31% Similarity=0.813 Sum_probs=46.1
Q ss_pred CcCccccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1151 PWDEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1151 ~w~dd~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
+.+++.|.+|+ +++++|+||+|+++||++|+.|||..+|.|+|+||.|...
T Consensus 4 d~~~~~C~~C~---~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 4 DPNEDWCAVCQ---NGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp CSSCSSBTTTC---CCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCC---CCCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 34567899997 5678999999999999999999999999999999999876
No 53
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=98.98 E-value=1.9e-10 Score=127.97 Aligned_cols=49 Identities=49% Similarity=1.301 Sum_probs=41.2
Q ss_pred ccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCC-CccCcccccC
Q 000127 1156 VCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEG-NWYCPPCLSG 1204 (2127)
Q Consensus 1156 ~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL~~VPeG-dW~CP~Cv~~ 1204 (2127)
.|.+|+...+++.||+||.|+++||++||+|||..+|+| +|+||.|...
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 699999888899999999999999999999999999999 9999999753
No 54
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=98.98 E-value=2.1e-10 Score=122.90 Aligned_cols=49 Identities=35% Similarity=0.897 Sum_probs=45.2
Q ss_pred CccccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1153 DEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1153 ~dd~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
+++.|.+|+ +++++|+||+|+++||++|+.|||..+|.|+|+|+.|...
T Consensus 3 ~~~~C~~C~---~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 3 NEDWCAVCQ---NGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp SCSSCTTTC---CCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCccccCC---CCCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCc
Confidence 457899997 5688999999999999999999999999999999999876
No 55
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=98.97 E-value=4.6e-10 Score=128.47 Aligned_cols=90 Identities=17% Similarity=0.217 Sum_probs=81.6
Q ss_pred HHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHHHHHhhhhhcCCCc
Q 000127 1013 AAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICTAYSDQS 1092 (2127)
Q Consensus 1013 Ll~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRLVWsN~~tyNgdgS 1092 (2127)
|..+..+++|..||+.. .+++|+.+|++||||+||+.|+..|.|. +...|.+|+++||.||..||+.++
T Consensus 182 l~~~~~s~~F~~pvd~~----------~~pdY~~iIk~PmdL~tI~~kl~~~~Y~-s~~~f~~D~~Li~~Na~~yN~~~s 250 (292)
T 3aad_A 182 MMAVPDSWPFHHPVNKK----------FVPDYYKVIVNPMDLETIRKNISKHKYQ-SRESFLDDVNLILANSVKYNGPES 250 (292)
T ss_dssp GGGSTTCGGGTSCCCTT----------TSTTHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred hhcCcchhHHHhccccc----------ccccHHHHcCCcCCHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHHHHCCCCC
Confidence 55778899999999862 4789999999999999999999999999 788899999999999999999999
Q ss_pred hHHHHHHHhhchhhhhhHHhh
Q 000127 1093 DLLQLAGKLCQNFEVLYKKEV 1113 (2127)
Q Consensus 1093 EVveLAekLSQiFESrYkKqV 1113 (2127)
.+..+|..|...|+..+...-
T Consensus 251 ~i~~~A~~L~~~~~~~~~~~~ 271 (292)
T 3aad_A 251 QYTKTAQEIVNVCYQTLTEYD 271 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988776543
No 56
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=98.96 E-value=3.5e-10 Score=130.66 Aligned_cols=90 Identities=19% Similarity=0.293 Sum_probs=81.7
Q ss_pred cchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHHHHHhhhhhcCCCchHH
Q 000127 1016 ADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICTAYSDQSDLL 1095 (2127)
Q Consensus 1016 sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRLVWsN~~tyNgdgSEVv 1095 (2127)
+..+++|.+||+.. .+++|+.+|++||||+||+.|+..+.|. +.+.|.+||++||+||+.||+.++.|.
T Consensus 178 ~~~s~~F~~pvd~~----------~~PdY~~iIk~PMDL~tI~~kl~~~~Y~-s~~ef~~Dv~Lif~N~~~yN~~~s~i~ 246 (311)
T 2r0y_A 178 VKLSEPFMELVDKD----------ELPEYYEIVHSPMALSIVKQNLEIGQYS-KIYDFIIDMLLVFQNAHIFNDPSALIY 246 (311)
T ss_dssp SCTTGGGSSCCCTT----------TCHHHHHHCSSCCCHHHHHHHHHHTCCC-BHHHHHHHHHHHHHHHHHHSCTTSHHH
T ss_pred CccHHHHhCCCChh----------hcccHHHHhCCccCHHHHHHHHHcCCCC-CHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 45689999999873 4789999999999999999999999998 788899999999999999999999999
Q ss_pred HHHHHhhchhhhhhHHhhhhh
Q 000127 1096 QLAGKLCQNFEVLYKKEVLTL 1116 (2127)
Q Consensus 1096 eLAekLSQiFESrYkKqVLr~ 1116 (2127)
.+|..|...|+..+.+.....
T Consensus 247 ~~A~~L~~~f~~~~~~~~~p~ 267 (311)
T 2r0y_A 247 KDATTLTNYFNYLIQKEFFPE 267 (311)
T ss_dssp HHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCc
Confidence 999999999999998865443
No 57
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=98.95 E-value=4.3e-10 Score=132.00 Aligned_cols=91 Identities=19% Similarity=0.296 Sum_probs=82.3
Q ss_pred cchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHHHHHhhhhhcCCCchHH
Q 000127 1016 ADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICTAYSDQSDLL 1095 (2127)
Q Consensus 1016 sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRLVWsN~~tyNgdgSEVv 1095 (2127)
+..+++|.+||++. .+++|+.||++||||+||+.|+..+.|. +.+.|.+||++||+||+.||+.++.|.
T Consensus 228 ~~~s~~F~~pvd~~----------~~PdY~~iIk~PmDL~tI~~kl~~~~Y~-s~~ef~~Dv~Lif~N~~~yN~~~s~i~ 296 (361)
T 2r10_A 228 VKLSEPFMELVDKD----------ELPEYYEIVHSPMALSIVKQNLEIGQYS-KIYDFIIDMLLVFQNAHIFNDPSALIY 296 (361)
T ss_dssp SCTTGGGSSCCCTT----------TCTHHHHHCSSCCCHHHHHHHHHHTCCC-BHHHHHHHHHHHHHHHHHHSCTTSHHH
T ss_pred CcchhcccCCCChh----------hcccHHHHhcCcccHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 45679999999873 4789999999999999999999999998 788899999999999999999999999
Q ss_pred HHHHHhhchhhhhhHHhhhhhh
Q 000127 1096 QLAGKLCQNFEVLYKKEVLTLV 1117 (2127)
Q Consensus 1096 eLAekLSQiFESrYkKqVLr~v 1117 (2127)
.+|..|...|+..+.+..+...
T Consensus 297 ~~A~~L~~~f~~~~~~~~~p~~ 318 (361)
T 2r10_A 297 KDATTLTNYFNYLIQKEFFPEL 318 (361)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcc
Confidence 9999999999999988654433
No 58
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=98.95 E-value=1.8e-10 Score=108.24 Aligned_cols=52 Identities=33% Similarity=0.892 Sum_probs=45.5
Q ss_pred CcCccccccccCCC--CCCCeEEecCCCCCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1151 PWDEGVCKVCGIDK--DDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1151 ~w~dd~CkVCg~~~--d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
..++..|.+|+... +++.||+||.|+++||++|++|| .+|+|+|||+.|...
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~--~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP--YIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCS--SCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCC--cCCCCCcCCccCcCc
Confidence 34567899998764 67899999999999999999998 499999999999865
No 59
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=98.95 E-value=3.1e-10 Score=113.89 Aligned_cols=57 Identities=42% Similarity=1.030 Sum_probs=47.0
Q ss_pred CCCCCcCcccc---ccccCC-CCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccccc
Q 000127 1147 IPKAPWDEGVC---KVCGID-KDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLS 1203 (2127)
Q Consensus 1147 lPr~~w~dd~C---kVCg~~-~d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~ 1203 (2127)
++...|.+..| .+|+.. .+++.||+||.|+++||++||+|||.++|+|+|+|+.|..
T Consensus 51 ~~~~~W~C~~C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 51 VKALRWQCIECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp HHTSCCCCTTTCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred hhccccccccCCccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 34567877655 556543 3457899999999999999999999999999999999975
No 60
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.93 E-value=5.4e-10 Score=111.33 Aligned_cols=58 Identities=40% Similarity=1.007 Sum_probs=50.5
Q ss_pred CCCCCcCccc---cccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1147 IPKAPWDEGV---CKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1147 lPr~~w~dd~---CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
+++..|.+.. |.+|++..+...||+||.|+++||++||+|||..+|+|+|+|+.|...
T Consensus 44 ~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 44 LKRAGWQCPECKVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp TTSTTCCCTTTCCCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred ccccCccCCcCCcccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 4567888764 567777777778999999999999999999999999999999999765
No 61
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=98.92 E-value=4.1e-10 Score=122.02 Aligned_cols=48 Identities=29% Similarity=0.868 Sum_probs=44.4
Q ss_pred ccccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1154 EGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1154 dd~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
++.|.+|+ +++++|+||+|+++||++|+.|||..+|.|+|+|+.|...
T Consensus 2 ~~~C~~C~---~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQ---KPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTC---CCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCC---CCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 46799998 5678999999999999999999999999999999999876
No 62
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=98.90 E-value=2.4e-10 Score=111.04 Aligned_cols=51 Identities=33% Similarity=0.974 Sum_probs=44.7
Q ss_pred CccccccccCCC--CCCCeEEecCCCCCCcccccCCCCCCCCCCCccCcccccCC
Q 000127 1153 DEGVCKVCGIDK--DDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSGN 1205 (2127)
Q Consensus 1153 ~dd~CkVCg~~~--d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~~ 1205 (2127)
++..|.+|+... +.+.||+||.|+.+||++|+.||+ +|+|+|||+.|....
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~--vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS--CCSSCCCCHHHHHHT
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc--cCCCceECccccCcc
Confidence 456899998654 567999999999999999999985 999999999998763
No 63
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=98.79 E-value=4.7e-09 Score=123.32 Aligned_cols=97 Identities=15% Similarity=0.063 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhcc--hhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHHHH
Q 000127 1004 KQCRKVLRCAAAAD--EERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVW 1081 (2127)
Q Consensus 1004 KrCr~VLkeLl~sd--~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRLVW 1081 (2127)
.-|..+|..+.... .+++|..||+. .++++|+.||++||||+||+.|+ +.|..+.+.|.+|+++||
T Consensus 81 ~~~~~~l~~l~~~~~~~~~~F~~p~~~----------~~~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~ 148 (361)
T 2r10_A 81 RFISFTLDVLIDKYKDIFKDFIKLPSR----------KFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLT 148 (361)
T ss_dssp HHHHHHHHHHHHHTHHHHGGGSSCCCT----------TTCTTHHHHCSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcccHHhcCCCCc----------ccCCChHhhcCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHH
Confidence 46888888887433 36889999876 34689999999999999999998 555446888999999999
Q ss_pred HhhhhhcCCCchHHHHHHHhhchhhhhhHHh
Q 000127 1082 HHICTAYSDQSDLLQLAGKLCQNFEVLYKKE 1112 (2127)
Q Consensus 1082 sN~~tyNgdgSEVveLAekLSQiFESrYkKq 1112 (2127)
.||..||..++.|+.+|..|...|+..+.+.
T Consensus 149 ~Na~~yN~~~s~i~~~a~~l~~~~~~~~~k~ 179 (361)
T 2r10_A 149 KNCQAYNEYDSLIVKNSMQVVMLIEFEVLKA 179 (361)
T ss_dssp HHHHHHBCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999998877654
No 64
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=98.76 E-value=2.1e-09 Score=100.70 Aligned_cols=52 Identities=29% Similarity=0.687 Sum_probs=47.1
Q ss_pred CccccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1153 DEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1153 ~dd~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
+...|.+|++..+++.||+||.|+.+||++|+++++..+|.++|+|+.|...
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~ 68 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANK 68 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHH
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCc
Confidence 3457999998887788999999999999999999999999999999999866
No 65
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=98.72 E-value=1.1e-08 Score=118.49 Aligned_cols=99 Identities=15% Similarity=0.058 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHhcc--hhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHH
Q 000127 1002 IMKQCRKVLRCAAAAD--EERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVRE 1079 (2127)
Q Consensus 1002 ImKrCr~VLkeLl~sd--~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRL 1079 (2127)
.-..|+.+|+.+.... .+++|.+||+. .++++|+.+|++||||+||+.|+ +.|..+.+.|.+|+++
T Consensus 29 ~~~~~~~~L~~~~~~~r~~~~~F~~p~~~----------~~~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~~f~~D~~l 96 (311)
T 2r0y_A 29 FNRFISFTLDVLIDKYKDIFKDFIKLPSR----------KFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVEL 96 (311)
T ss_dssp HHHHHHHHHHHHHHHSHHHHGGGSSCCCT----------TTCHHHHHHCSSCCCHHHHHHSC--CCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCchhHHhcCCCCc----------ccCCChHHHcCCCCCHHHHHHHH--hcccCCHHHHHHHHHH
Confidence 4567777887777432 56788888765 34689999999999999999998 5554468889999999
Q ss_pred HHHhhhhhcCCCchHHHHHHHhhchhhhhhHHh
Q 000127 1080 VWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKE 1112 (2127)
Q Consensus 1080 VWsN~~tyNgdgSEVveLAekLSQiFESrYkKq 1112 (2127)
||.||..||..++.|..+|..|...|+..+.+.
T Consensus 97 i~~Na~~yN~~~s~i~~~A~~l~~~~~~~~~k~ 129 (311)
T 2r0y_A 97 LTKNCQAYNEYDSLIVKNSMQVVMLIEFEVLKA 129 (311)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999998877664
No 66
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.67 E-value=1.2e-08 Score=102.58 Aligned_cols=53 Identities=38% Similarity=0.940 Sum_probs=47.9
Q ss_pred cCccccccccCCCCCCCeEEec--CCCCCCcccccCCCCCCCCCCCccCcccccCCCCCC
Q 000127 1152 WDEGVCKVCGIDKDDDNVLLCD--TCDSGYHTYCLTPPLTRVPEGNWYCPPCLSGNCKNK 1209 (2127)
Q Consensus 1152 w~dd~CkVCg~~~d~geLLlCD--~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~~c~~~ 1209 (2127)
.+++.|.+|+ ++++||+|| .|+++||++||. |..+|+|+||||.|.+..|++.
T Consensus 13 ~~~~~C~~C~---~~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k~ 67 (107)
T 4gne_A 13 MHEDYCFQCG---DGGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSSA 67 (107)
T ss_dssp SSCSSCTTTC---CCSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCSB
T ss_pred CCCCCCCcCC---CCCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCCC
Confidence 4567899998 678999999 899999999999 8999999999999999988853
No 67
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.53 E-value=8.3e-08 Score=95.70 Aligned_cols=78 Identities=28% Similarity=0.524 Sum_probs=57.7
Q ss_pred cCccccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCcccc-cCCCCCCccCCCCCcccccccccccch
Q 000127 1152 WDEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCL-SGNCKNKYMSQVPHVSSRIPKRRHQGE 1229 (2127)
Q Consensus 1152 w~dd~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv-~~~c~~~~~~Qe~~~~sq~~rKy~~GE 1229 (2127)
.+++.|.+|+...+.++||+|+.|++.||++||.|++..+|.+.|+|+.|. +..|+.............+.+.||..+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~~C 83 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKVCQNCKQSGEDSKMLVCDTCDKGYHTFC 83 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTCCCTTTCCCSCCTTEEECSSSCCEEEGGG
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCCcccccCccCCCCCeeECCCCCcHHhHHh
Confidence 356789999977666778999999999999999999988899999999994 666664322211222255555555544
No 68
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.52 E-value=5.2e-08 Score=96.26 Aligned_cols=49 Identities=27% Similarity=0.750 Sum_probs=43.9
Q ss_pred ccccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1154 EGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1154 dd~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
...| +|+...+.+.||+||.|+.+||+.|+.|++..+|+ .|+|+.|...
T Consensus 28 ~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~-~w~C~~C~~~ 76 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPD-TYLCERCQPR 76 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCS-SBCCTTTSSS
T ss_pred CEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCC-CEECCCCcCC
Confidence 3467 89888889999999999999999999999999996 8999999755
No 69
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.46 E-value=1.6e-07 Score=88.42 Aligned_cols=53 Identities=32% Similarity=0.859 Sum_probs=43.9
Q ss_pred CCCCcCccccccccCCCCCCCeEEecC--CC-CCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1148 PKAPWDEGVCKVCGIDKDDDNVLLCDT--CD-SGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1148 Pr~~w~dd~CkVCg~~~d~geLLlCD~--CD-~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
+.++.+...| +|++... +.||.||. |+ .+||+.|+. |..+|.|.||||.|...
T Consensus 10 ~~d~~~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 10 PVDPNEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp CCCTTSCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred ccCCCCCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 3444455678 7987654 68999999 77 699999999 88999999999999876
No 70
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=98.30 E-value=1.5e-07 Score=85.79 Aligned_cols=48 Identities=31% Similarity=0.881 Sum_probs=39.9
Q ss_pred CccccccccCCCCCCCeEEecC--CC-CCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1153 DEGVCKVCGIDKDDDNVLLCDT--CD-SGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1153 ~dd~CkVCg~~~d~geLLlCD~--CD-~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
+...| +|++.. .+.||.||. |+ .+||+.|++ |..+|.|.||||.|..+
T Consensus 9 e~~~C-~C~~~~-~g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~~ 59 (60)
T 2vnf_A 9 EPTYC-LCHQVS-YGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 59 (60)
T ss_dssp CCEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC-
T ss_pred CCCEE-ECCCcC-CCCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccCc
Confidence 34568 898764 478999999 55 799999999 88999999999999753
No 71
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.30 E-value=5.9e-07 Score=88.40 Aligned_cols=51 Identities=31% Similarity=0.854 Sum_probs=42.2
Q ss_pred CCcCccccccccCCCCCCCeEEecC--CC-CCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1150 APWDEGVCKVCGIDKDDDNVLLCDT--CD-SGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1150 ~~w~dd~CkVCg~~~d~geLLlCD~--CD-~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
++.+...| +|++... +.||.||. |+ .+||+.|+. |..+|.|.||||.|...
T Consensus 32 d~~e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 32 DPNEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CSCCCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CCCCCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 33344578 9987654 68999999 76 799999999 88999999999999876
No 72
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=98.28 E-value=1.9e-07 Score=85.03 Aligned_cols=48 Identities=31% Similarity=0.913 Sum_probs=40.6
Q ss_pred CccccccccCCCCCCCeEEecC--CC-CCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1153 DEGVCKVCGIDKDDDNVLLCDT--CD-SGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1153 ~dd~CkVCg~~~d~geLLlCD~--CD-~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
+...| +|++.. .+.||.||. |+ .+||+.|++ |..+|.|.||||.|..+
T Consensus 8 e~~yC-~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~~ 58 (59)
T 3c6w_A 8 EPTYC-LCHQVS-YGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQE 58 (59)
T ss_dssp CCEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHCC
T ss_pred CCcEE-ECCCCC-CCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccCc
Confidence 44578 898754 478999999 77 699999999 88999999999999754
No 73
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=98.28 E-value=1.4e-07 Score=99.17 Aligned_cols=51 Identities=24% Similarity=0.684 Sum_probs=44.8
Q ss_pred CcCccccccccCCCCCCCeEEecCCCCCCcccccCCCCC-----C--CCCCCccCcccccC
Q 000127 1151 PWDEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLT-----R--VPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1151 ~w~dd~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL~-----~--VPeGdW~CP~Cv~~ 1204 (2127)
+-.++.|.+|+ ++++|++||.|+++||..|+.|||. + .|.|+|+|+.|...
T Consensus 60 Dg~~d~C~vC~---~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 60 DGMDEQCRWCA---EGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TSCBCSCSSSC---CCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCeecccC---CCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 34567899997 7899999999999999999999986 2 59999999999865
No 74
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=98.12 E-value=6.6e-07 Score=82.29 Aligned_cols=48 Identities=33% Similarity=0.928 Sum_probs=40.0
Q ss_pred CccccccccCCCCCCCeEEecC--CC-CCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1153 DEGVCKVCGIDKDDDNVLLCDT--CD-SGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1153 ~dd~CkVCg~~~d~geLLlCD~--CD-~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
+...| +|++.. .+.||.||. |+ .+||+.|+. |...|.|.||||.|...
T Consensus 10 e~~yC-~C~~~~-~g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 10 EPTYC-LCNQVS-YGEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp CCEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHTC
T ss_pred CCcEE-ECCCCC-CCCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCcccC
Confidence 34578 898754 468999999 55 999999999 77899999999999764
No 75
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=98.10 E-value=1.2e-06 Score=86.12 Aligned_cols=47 Identities=30% Similarity=0.720 Sum_probs=39.4
Q ss_pred ccccccccCCCCCCCeEEecCCC---CCCcccccCCCCCCCCCCCccCcc-cccC
Q 000127 1154 EGVCKVCGIDKDDDNVLLCDTCD---SGYHTYCLTPPLTRVPEGNWYCPP-CLSG 1204 (2127)
Q Consensus 1154 dd~CkVCg~~~d~geLLlCD~CD---~aYHl~CL~PPL~~VPeGdW~CP~-Cv~~ 1204 (2127)
...| +|+.... +.||.||.|+ .+||+.|+. |..+|.|.||||. |...
T Consensus 26 ~~yC-iC~~~~~-g~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~~ 76 (90)
T 2jmi_A 26 EVYC-FCRNVSY-GPMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKEI 76 (90)
T ss_dssp SCCS-TTTCCCS-SSEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHHH
T ss_pred CcEE-EeCCCCC-CCEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcch
Confidence 4478 8987544 5799999976 899999999 8899999999999 8643
No 76
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=97.98 E-value=1.6e-06 Score=87.51 Aligned_cols=92 Identities=16% Similarity=0.299 Sum_probs=59.6
Q ss_pred cccccccCC-------CCCCCeEEecCCCCCCcccccCCCCC---CCCCCCccCccc-ccCCCCCCccCCCCCccccccc
Q 000127 1155 GVCKVCGID-------KDDDNVLLCDTCDSGYHTYCLTPPLT---RVPEGNWYCPPC-LSGNCKNKYMSQVPHVSSRIPK 1223 (2127)
Q Consensus 1155 d~CkVCg~~-------~d~geLLlCD~CD~aYHl~CL~PPL~---~VPeGdW~CP~C-v~~~c~~~~~~Qe~~~~sq~~r 1223 (2127)
+.|.+|... +++++||.|+.|++.||.+||.+++. .+|.+.|+|+.| .+..|+.............+.+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~ 81 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSENDDQLLFCDDCDR 81 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGCCCTTTTCCTTTTTEEECSSSCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccCccCcccccCCCCceEEcCCCCc
Confidence 468888653 34679999999999999999998743 578999999999 5666664321112222255555
Q ss_pred ccccchhhhhhhhhhhhhhhccccccccccCh
Q 000127 1224 RRHQGEFTCRILEEVFHLAATMEMRDYWDYSD 1255 (2127)
Q Consensus 1224 Ky~~GE~~~~f~ee~~hLaid~lEKEFW~LSv 1255 (2127)
.||..+.. . ....+.+.-|++..
T Consensus 82 ~yH~~Cl~------p---pl~~~P~g~W~C~~ 104 (114)
T 2kwj_A 82 GYHMYCLN------P---PVAEPPEGSWSCHL 104 (114)
T ss_dssp EEETTTSS------S---CCSSCCSSCCCCHH
T ss_pred cccccccC------C---CccCCCCCCeECcc
Confidence 55554422 1 12223445688853
No 77
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=97.98 E-value=6.4e-07 Score=92.92 Aligned_cols=52 Identities=23% Similarity=0.733 Sum_probs=44.9
Q ss_pred CCcCccccccccCCCCCCCeEEecCCCCCCcccccCCCC-----CCC--CCCCccCcccccC
Q 000127 1150 APWDEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPL-----TRV--PEGNWYCPPCLSG 1204 (2127)
Q Consensus 1150 ~~w~dd~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL-----~~V--PeGdW~CP~Cv~~ 1204 (2127)
++..++.|.+|+ +++++++||.|+++||..|+.|++ .++ |.++|+|+.|...
T Consensus 53 ~Dg~~~~C~vC~---dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 53 SDGMDEQCRWCA---EGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TTSCBSSCTTTC---CCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCCcCeecC---CCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 345667899997 889999999999999999999984 455 8999999999765
No 78
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=97.94 E-value=1.6e-05 Score=86.48 Aligned_cols=91 Identities=13% Similarity=0.199 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHH
Q 000127 1000 DVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVRE 1079 (2127)
Q Consensus 1000 dlImKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRL 1079 (2127)
..+....+.||+.|..+..+++|... .+++||||.+|..|+..|.|. +.+.|.+||++
T Consensus 74 ~el~~~l~~vl~~L~~~~~s~~~~~y---------------------~~k~PmDL~~i~kKl~~~~Y~-s~~eF~~Dv~l 131 (183)
T 3lqh_A 74 KELQISLKQVLTALLNSRTTSHLLRY---------------------RQQQPLDLEGVKRKMDQGNYT-SVLEFSDDIVK 131 (183)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHTC---------------------CC--CCSHHHHHHHHHTTCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccHhhhhh---------------------hhcCCccHHHHHHHHhcCCCC-CHHHHHHHHHH
Confidence 33456678999999999999988662 138999999999999999999 78889999999
Q ss_pred HHHhhhhhcCCCchHHHHHHHhhchhhhhhHHh
Q 000127 1080 VWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKE 1112 (2127)
Q Consensus 1080 VWsN~~tyNgdgSEVveLAekLSQiFESrYkKq 1112 (2127)
||+|+..++.+.+++..+...|..-|+...++.
T Consensus 132 If~n~~~~~~~~~e~~~ag~~l~~~f~~~l~~v 164 (183)
T 3lqh_A 132 IIQAAINSDGGQPEIKKANSMVKSFFIRQMERV 164 (183)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccCCChhhhhhhhHHHHHHHHHHHHH
Confidence 999999999999999988888887777655543
No 79
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=97.91 E-value=3.9e-05 Score=81.26 Aligned_cols=107 Identities=18% Similarity=0.198 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHH
Q 000127 1000 DVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVRE 1079 (2127)
Q Consensus 1000 dlImKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRL 1079 (2127)
..|-..+..++..++..... -+..+...++.+.++. ++|+. ++||+|.+|+.|+..|.|. +.+.|.+|+.+
T Consensus 6 ~~lq~~l~~l~~~v~~~~De--~GR~lsd~F~~LPsk~----pdYY~--k~Pi~l~~Ikkri~~~~Y~-sld~f~~D~~l 76 (147)
T 3iu6_A 6 LLIQELIHNLFVSVMSHQDD--EGRCYSDSLAEIPAVD----PNFPN--KPPLTFDIIRKNVENNRYR-RLDLFQEHMFE 76 (147)
T ss_dssp CHHHHHHHHHHHHHHTCBCT--TSCBGGGGGTTCCSSC----TTSTT--SCCCCHHHHHHHHHTTCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCC--CCCcchHHHhHCCCCC----ccccC--CCCcCHHHHHHHHhcCCCC-CHHHHHHHHHH
Confidence 34566778889999855443 3666666677766654 45655 9999999999999999999 78889999999
Q ss_pred HHHhhhhhcCCCchHHHHHHHhhchhhhhhHHhhhh
Q 000127 1080 VWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVLT 1115 (2127)
Q Consensus 1080 VWsN~~tyNgdgSEVveLAekLSQiFESrYkKqVLr 1115 (2127)
||+|+..||..++.|..-|..|...|...|.+.+..
T Consensus 77 mf~NAr~yN~e~S~IyeDAv~Lq~~f~~~r~eL~~~ 112 (147)
T 3iu6_A 77 VLERARRMNRTDSEIYEDAVELQQFFIKIRDELCKN 112 (147)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999988887654
No 80
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=97.86 E-value=3.4e-06 Score=84.79 Aligned_cols=75 Identities=21% Similarity=0.467 Sum_probs=51.9
Q ss_pred cccccccCC------CCCCCeEEecCCCCCCcccccCC--CC-CCCCCCCccCccc-ccCCCCCCccCCC-CCccccccc
Q 000127 1155 GVCKVCGID------KDDDNVLLCDTCDSGYHTYCLTP--PL-TRVPEGNWYCPPC-LSGNCKNKYMSQV-PHVSSRIPK 1223 (2127)
Q Consensus 1155 d~CkVCg~~------~d~geLLlCD~CD~aYHl~CL~P--PL-~~VPeGdW~CP~C-v~~~c~~~~~~Qe-~~~~sq~~r 1223 (2127)
..|.+|.+. +.+++||.|+.|++.||++||+. ++ ..+|.+.|+|+.| .+..|+......+ ......+.+
T Consensus 6 ~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~~~~~~ll~Cd~C~~ 85 (112)
T 3v43_A 6 PICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQGKNADNMLFCDSCDR 85 (112)
T ss_dssp SSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCCBTTTCCCCCTTCCCEECTTTCC
T ss_pred ccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCCccccccCcCCCccceEEcCCCCC
Confidence 468888654 35679999999999999999974 23 3578899999999 6777764322211 112245666
Q ss_pred ccccch
Q 000127 1224 RRHQGE 1229 (2127)
Q Consensus 1224 Ky~~GE 1229 (2127)
.||..+
T Consensus 86 ~yH~~C 91 (112)
T 3v43_A 86 GFHMEC 91 (112)
T ss_dssp EECGGG
T ss_pred eeeccc
Confidence 666554
No 81
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.74 E-value=9.2e-06 Score=76.37 Aligned_cols=46 Identities=37% Similarity=0.963 Sum_probs=38.5
Q ss_pred cccccccCCCCCCCeEEecCCC---CCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1155 GVCKVCGIDKDDDNVLLCDTCD---SGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1155 d~CkVCg~~~d~geLLlCD~CD---~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
.+| +|++.. .+.||.||.|+ .+||+.|+. |...|.+.||||.|...
T Consensus 7 ~yC-~C~~~~-~g~MI~CD~cdC~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~ 55 (70)
T 1x4i_A 7 GYC-ICNQVS-YGEMVGCDNQDCPIEWFHYGCVG--LTEAPKGKWYCPQCTAA 55 (70)
T ss_dssp CCS-TTSCCC-CSSEECCSCTTCSCCCEEHHHHT--CSSCCSSCCCCHHHHHH
T ss_pred eEE-EcCCCC-CCCEeEeCCCCCCccCCcccccc--cCcCCCCCEECCCCCcc
Confidence 467 487664 45999999986 899999999 77889999999999765
No 82
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=97.71 E-value=1.8e-05 Score=74.06 Aligned_cols=50 Identities=20% Similarity=0.473 Sum_probs=41.9
Q ss_pred CccccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1153 DEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1153 ~dd~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
+...| +|++..+++.||.||.|..+||..|++.....+| +.|+|+.|...
T Consensus 18 ~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~-~~~~C~~C~~s 67 (68)
T 3o70_A 18 GLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP-EVFVCQKCRDS 67 (68)
T ss_dssp TCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCC-SSCCCHHHHTC
T ss_pred CceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCC-CcEECCCCCCC
Confidence 34578 9998878778999999999999999997665566 58999999754
No 83
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.52 E-value=4.1e-05 Score=69.86 Aligned_cols=51 Identities=27% Similarity=0.686 Sum_probs=40.4
Q ss_pred ccccccccCCCC-CCCeEEecCCCCCCcccccCCCCCCCC-CCCccCcccccC
Q 000127 1154 EGVCKVCGIDKD-DDNVLLCDTCDSGYHTYCLTPPLTRVP-EGNWYCPPCLSG 1204 (2127)
Q Consensus 1154 dd~CkVCg~~~d-~geLLlCD~CD~aYHl~CL~PPL~~VP-eGdW~CP~Cv~~ 1204 (2127)
...|.+|++..+ .+.||.||.|+..||..|+........ ...|+|+.|..+
T Consensus 6 ~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 6 SGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 457999988754 678999999999999999995433332 258999999876
No 84
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=97.51 E-value=3.7e-05 Score=68.13 Aligned_cols=50 Identities=24% Similarity=0.595 Sum_probs=40.7
Q ss_pred cCccccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccccc
Q 000127 1152 WDEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLS 1203 (2127)
Q Consensus 1152 w~dd~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~ 1203 (2127)
|+...| +|++..+++.||.||.|...||..|++.....+| ..|+|+.|..
T Consensus 2 ~d~~~C-~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~-~~~~C~~C~~ 51 (52)
T 3o7a_A 2 WDLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP-EVFVCQKCRD 51 (52)
T ss_dssp TTCBCS-TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCC-SSCCCHHHHT
T ss_pred CcCeEE-EeCCcCCCCCEEEcCCCCccccccccCCCcccCC-CcEECcCCCC
Confidence 444566 7888877789999999999999999996655555 5899999963
No 85
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.31 E-value=4.6e-05 Score=71.87 Aligned_cols=50 Identities=22% Similarity=0.638 Sum_probs=39.4
Q ss_pred cccccccCCCCCCCeEEecCCCCCCcccccCCCCCC---C--CCCCccCcccccCC
Q 000127 1155 GVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTR---V--PEGNWYCPPCLSGN 1205 (2127)
Q Consensus 1155 d~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL~~---V--PeGdW~CP~Cv~~~ 1205 (2127)
..| +|++..+++.||.||.|+.+||..|+...... + +...|+|+.|....
T Consensus 17 ~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 17 LYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 468 89988777899999999999999999843221 0 24689999998763
No 86
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.31 E-value=9.3e-05 Score=69.32 Aligned_cols=49 Identities=29% Similarity=0.620 Sum_probs=38.4
Q ss_pred cccccccCCCCC-CCeEEecCCCCCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1155 GVCKVCGIDKDD-DNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1155 d~CkVCg~~~d~-geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
..| +|++..+. ..||.||.|..+||..|+...........|+|+.|...
T Consensus 17 ~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 17 VDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp ECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred eEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 468 79987554 47999999999999999996533223468999999865
No 87
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=97.29 E-value=0.0001 Score=68.46 Aligned_cols=49 Identities=27% Similarity=0.674 Sum_probs=37.1
Q ss_pred ccccccccCCCCCCCeEEecC--CCCCCcccccCCCC-----CCCCCCCccCcccccC
Q 000127 1154 EGVCKVCGIDKDDDNVLLCDT--CDSGYHTYCLTPPL-----TRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1154 dd~CkVCg~~~d~geLLlCD~--CD~aYHl~CL~PPL-----~~VPeGdW~CP~Cv~~ 1204 (2127)
...| +|+...+.+.||.||. |..+||..|++-.- ..+| ..|+|+.|+..
T Consensus 10 ~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p-~~~~C~~Cr~~ 65 (68)
T 2rsd_A 10 KVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVP-PVFYCELCRLS 65 (68)
T ss_dssp EECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCC-SSCCCHHHHHH
T ss_pred CEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCC-CcEECcCccCc
Confidence 3467 8988888899999995 99999999997321 1122 26999999753
No 88
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=97.28 E-value=3e-05 Score=82.32 Aligned_cols=51 Identities=25% Similarity=0.597 Sum_probs=39.7
Q ss_pred CccccccccCCCC-CCCeEEecCCCCCCcccccCCCCCC-CCCCCccCcccccC
Q 000127 1153 DEGVCKVCGIDKD-DDNVLLCDTCDSGYHTYCLTPPLTR-VPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1153 ~dd~CkVCg~~~d-~geLLlCD~CD~aYHl~CL~PPL~~-VPeGdW~CP~Cv~~ 1204 (2127)
+...| +|++..+ .+.|+.||.|+.+||..|++..... .+.+.|+|+.|...
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 34579 9988654 6789999999999999999853322 23568999999866
No 89
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=97.25 E-value=5.7e-05 Score=75.72 Aligned_cols=48 Identities=29% Similarity=0.784 Sum_probs=39.1
Q ss_pred cccccccCCC-CCCCeEEec-CCCCCCcccccCCCCCC--------CCCCCccCcccccC
Q 000127 1155 GVCKVCGIDK-DDDNVLLCD-TCDSGYHTYCLTPPLTR--------VPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1155 d~CkVCg~~~-d~geLLlCD-~CD~aYHl~CL~PPL~~--------VPeGdW~CP~Cv~~ 1204 (2127)
..|.+|++.- +.+.|+.|| .|+.+||..|++ |+. .|.+.|+||.|...
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVg--lt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTG--MTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTT--CCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCC--cCHHHHHhhccCCCCCEECccccCc
Confidence 3688998763 456899998 999999999998 443 47789999999876
No 90
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.17 E-value=0.00017 Score=68.75 Aligned_cols=48 Identities=29% Similarity=0.717 Sum_probs=39.2
Q ss_pred ccccccccCCCCCCCeEEec--CCCCCCcccccCCCCCCCCC-------CCccCcccccC
Q 000127 1154 EGVCKVCGIDKDDDNVLLCD--TCDSGYHTYCLTPPLTRVPE-------GNWYCPPCLSG 1204 (2127)
Q Consensus 1154 dd~CkVCg~~~d~geLLlCD--~CD~aYHl~CL~PPL~~VPe-------GdW~CP~Cv~~ 1204 (2127)
...| +|+...+.+.|+.|| .|+.+||..|+. |...|. ..|+|+.|...
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVg--i~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVI--LPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHS--CCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CEEe-ECCCcCCCCCEEEECCccCCccccCEEEc--cccccccccccCCCCEECCCCCcc
Confidence 3478 899887788999999 999999999998 434332 48999999866
No 91
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=97.13 E-value=6.9e-05 Score=69.67 Aligned_cols=46 Identities=28% Similarity=0.849 Sum_probs=38.6
Q ss_pred cccccccCCC-CCCCeEEec-CCCCCCcccccCCCCCC--------CCCCCccCcccc
Q 000127 1155 GVCKVCGIDK-DDDNVLLCD-TCDSGYHTYCLTPPLTR--------VPEGNWYCPPCL 1202 (2127)
Q Consensus 1155 d~CkVCg~~~-d~geLLlCD-~CD~aYHl~CL~PPL~~--------VPeGdW~CP~Cv 1202 (2127)
..|.+|++.. +...|+.|| .|+..||..|++ |+. -|.+.|+|+.|.
T Consensus 9 ~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg--lt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 9 YPCGICTNEVNDDQDAILCEASCQKWFHRICTG--MTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT--CCHHHHHHHHHCTTEEECCHHHH
T ss_pred CcCccCCCccCCCCCeEecccCccccCchhccC--CCHHHHHHhhccCCCcEECcCcc
Confidence 4699999864 466899999 999999999998 443 478899999996
No 92
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=96.93 E-value=0.00015 Score=68.96 Aligned_cols=50 Identities=18% Similarity=0.457 Sum_probs=38.3
Q ss_pred cccccccCCCC-CCCeEEecCCCCCCcccccCCCCCCCC-CCCccCcccccCC
Q 000127 1155 GVCKVCGIDKD-DDNVLLCDTCDSGYHTYCLTPPLTRVP-EGNWYCPPCLSGN 1205 (2127)
Q Consensus 1155 d~CkVCg~~~d-~geLLlCD~CD~aYHl~CL~PPL~~VP-eGdW~CP~Cv~~~ 1205 (2127)
..| +|++..+ .+.||.||.|+.+||..|+.-...... ...|+|+.|....
T Consensus 13 ~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 13 VYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred cEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 357 8988764 789999999999999999984322221 2589999998763
No 93
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=96.74 E-value=0.00024 Score=62.98 Aligned_cols=47 Identities=19% Similarity=0.499 Sum_probs=35.1
Q ss_pred ccccccCCCC-CCCeEEec-CCCCCCcccccCCCCCCCCCCCccCcccc
Q 000127 1156 VCKVCGIDKD-DDNVLLCD-TCDSGYHTYCLTPPLTRVPEGNWYCPPCL 1202 (2127)
Q Consensus 1156 ~CkVCg~~~d-~geLLlCD-~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv 1202 (2127)
.|.+|++..+ ++.|+.|| .|+..||..|++-.........|+|+.|.
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 3778887764 67799999 89999999999933222123689999994
No 94
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=96.66 E-value=0.00035 Score=68.19 Aligned_cols=50 Identities=24% Similarity=0.652 Sum_probs=41.5
Q ss_pred CccccccccCCCCCCCeEEecCCCCCCcccccCCC------------CCCCCCCCccCccccc
Q 000127 1153 DEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPP------------LTRVPEGNWYCPPCLS 1203 (2127)
Q Consensus 1153 ~dd~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PP------------L~~VPeGdW~CP~Cv~ 1203 (2127)
+|+.|.||..- ..+.++-|..|.+.||..||.++ +...+.+-|.|+.|-.
T Consensus 14 ~D~~C~VC~~~-t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 14 NDEMCDVCEVW-TAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CSCCCTTTCCC-CSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred CCcccCccccc-cccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 57789999644 36788999999999999999986 5666778899999943
No 95
>3vxv_A Methyl-CPG-binding domain protein 4; methyl CPG binding domain, protein-DNA complex, versatIle BA recognition, hydrolase-DNA complex; HET: DNA 5CM; 2.00A {Mus musculus} PDB: 3vxx_A* 3vyb_A* 3vyq_A*
Probab=96.59 E-value=0.00057 Score=64.54 Aligned_cols=41 Identities=12% Similarity=0.041 Sum_probs=35.5
Q ss_pred ccccccC-----CCcC-ceeeEEEEecCCceeccccccccccccccc
Q 000127 159 ERVWASG-----NSIP-RTSYQNYYAVNGNRFDSMFDVPCHLGLVSN 199 (2127)
Q Consensus 159 e~~w~~~-----~~~~-~~~~~~y~~~~g~~f~s~~~~a~~lgl~~~ 199 (2127)
..||+.+ .+.+ +..+++|++|.|++|+|+.||+.||+..+.
T Consensus 7 p~GW~R~~~~R~~G~s~gk~DvyY~sP~Gkk~RSk~ev~~yL~~~~~ 53 (69)
T 3vxv_A 7 PCGWERVVKQRLSGKTAGKFDVYFISPQGLKFRSKRSLANYLLKNGE 53 (69)
T ss_dssp CTTCEEEEEECCSSTTTTCEEEEEECTTSCEECSHHHHHHHHHHHCC
T ss_pred CCCCEEEEEEeccCCCCCcceEEEEcCCCCEeeCHHHHHHHHHhCCC
Confidence 5799888 3444 788999999999999999999999999864
No 96
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=96.34 E-value=0.0006 Score=64.42 Aligned_cols=50 Identities=26% Similarity=0.685 Sum_probs=38.2
Q ss_pred ccccccCCCC-CCCeEEecCCCCCCcccccCCCCCCCCC-CCccCcccccCCC
Q 000127 1156 VCKVCGIDKD-DDNVLLCDTCDSGYHTYCLTPPLTRVPE-GNWYCPPCLSGNC 1206 (2127)
Q Consensus 1156 ~CkVCg~~~d-~geLLlCD~CD~aYHl~CL~PPL~~VPe-GdW~CP~Cv~~~c 1206 (2127)
.| +|+...+ ++.||.||.|+..||..|++..-...+. ..|+|+.|....+
T Consensus 12 yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~~ 63 (75)
T 3kqi_A 12 YC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHG 63 (75)
T ss_dssp ET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHHC
T ss_pred EE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccCC
Confidence 45 8887654 6789999999999999999954333333 4799999986633
No 97
>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain, gene regulation; NMR {Homo sapiens} SCOP: d.10.1.3 PDB: 1ig4_A*
Probab=96.28 E-value=0.001 Score=63.73 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=33.3
Q ss_pred ccccccC-----CCcC-ceeeEEEEecCCceecccccccccccc
Q 000127 159 ERVWASG-----NSIP-RTSYQNYYAVNGNRFDSMFDVPCHLGL 196 (2127)
Q Consensus 159 e~~w~~~-----~~~~-~~~~~~y~~~~g~~f~s~~~~a~~lgl 196 (2127)
..||..+ ++.+ +..+++|++|.|++|+|+.||++||+-
T Consensus 12 P~GW~Re~~~R~~g~s~gk~DvyY~sP~Gkk~RS~~ev~ryL~~ 55 (75)
T 1d9n_A 12 GPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGP 55 (75)
T ss_dssp CSSCEEEECSSSSSCTTCCCCEEEECSSSCEECSTHHHHHHHCT
T ss_pred CCCCEEEEEEecCCCCCCceEEEEECCCCCeeecHHHHHHHhcc
Confidence 5799887 4455 789999999999999999999999984
No 98
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=96.17 E-value=0.0014 Score=71.60 Aligned_cols=49 Identities=29% Similarity=0.664 Sum_probs=37.2
Q ss_pred ccccccCCCCCC----CeEEecCCCCCCcccccCCCC------CCCCC-CCccCcccccC
Q 000127 1156 VCKVCGIDKDDD----NVLLCDTCDSGYHTYCLTPPL------TRVPE-GNWYCPPCLSG 1204 (2127)
Q Consensus 1156 ~CkVCg~~~d~g----eLLlCD~CD~aYHl~CL~PPL------~~VPe-GdW~CP~Cv~~ 1204 (2127)
.|.+|++.-+++ .|+.||.|+.+||..|.+..- ..+|+ ..|+||.|...
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred cCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 588888765544 499999999999999998431 12343 37999999876
No 99
>2ky8_A Methyl-CPG-binding domain protein 2; DNA binding domain, transcription-DNA complex; HET: DNA 5CM TED; NMR {Gallus gallus}
Probab=96.16 E-value=0.0014 Score=62.34 Aligned_cols=39 Identities=21% Similarity=0.358 Sum_probs=33.9
Q ss_pred ccccccC-----CCcC-ceeeEEEEecCCceeccccccccccccc
Q 000127 159 ERVWASG-----NSIP-RTSYQNYYAVNGNRFDSMFDVPCHLGLV 197 (2127)
Q Consensus 159 e~~w~~~-----~~~~-~~~~~~y~~~~g~~f~s~~~~a~~lgl~ 197 (2127)
..||+.+ ++.+ +..+++|++|.|++|+|+.||+.||+..
T Consensus 14 p~GW~R~~~~R~~g~s~~k~DvyY~sP~Gkr~RS~~ev~~YL~~~ 58 (72)
T 2ky8_A 14 PPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLGNA 58 (72)
T ss_dssp CTTCEEEEEECCSSTTTTCEEEEEECTTCCEEESHHHHHHHHTTS
T ss_pred CCCCEEEEEEecCCCCCCceEEEEECCCCCEeEcHHHHHHHHhcC
Confidence 5799888 3444 7899999999999999999999999874
No 100
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=95.96 E-value=0.0025 Score=78.62 Aligned_cols=41 Identities=24% Similarity=0.569 Sum_probs=30.8
Q ss_pred CCCeEEecCCCCCCcccccCCCCCCC-CCCCccCcccccCCC
Q 000127 1166 DDNVLLCDTCDSGYHTYCLTPPLTRV-PEGNWYCPPCLSGNC 1206 (2127)
Q Consensus 1166 ~geLLlCD~CD~aYHl~CL~PPL~~V-PeGdW~CP~Cv~~~c 1206 (2127)
+..|+.||.|+..||..|++-.-... ..+.|+||.|....+
T Consensus 55 ~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~~~g 96 (528)
T 3pur_A 55 DFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVPHTG 96 (528)
T ss_dssp TTSEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTTTHHHHC
T ss_pred CCCEEECCCCCcCCCCcCCCCChhHhcCCCeEECcCCcCCCC
Confidence 45799999999999999999332222 235799999987533
No 101
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=95.82 E-value=0.0014 Score=80.51 Aligned_cols=49 Identities=24% Similarity=0.586 Sum_probs=38.1
Q ss_pred cccccccCCCC-CCCeEEecCCCCCCcccccCCCCCCCCC---CCccCcccccCCC
Q 000127 1155 GVCKVCGIDKD-DDNVLLCDTCDSGYHTYCLTPPLTRVPE---GNWYCPPCLSGNC 1206 (2127)
Q Consensus 1155 d~CkVCg~~~d-~geLLlCD~CD~aYHl~CL~PPL~~VPe---GdW~CP~Cv~~~c 1206 (2127)
..| +|++..+ .+.|+.||.|+..||..|++ +...+. +.|+|+.|....+
T Consensus 38 ~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvg--l~~~~~~~~~~~~C~~C~~~~~ 90 (488)
T 3kv5_D 38 VYC-VCRQPYDVNRFMIECDICKDWFHGSCVG--VEEHHAVDIDLYHCPNCAVLHG 90 (488)
T ss_dssp EET-TTTEECCTTSCEEEBTTTCCEEEHHHHT--CCGGGGGGEEEBCCHHHHHHHC
T ss_pred eEE-eCCCcCCCCCCeEEccCCCCceeeeecC--cCcccccCCCEEECCCCcCCcC
Confidence 457 8987644 78899999999999999998 434332 4799999986533
No 102
>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A
Probab=95.76 E-value=0.0025 Score=63.73 Aligned_cols=40 Identities=13% Similarity=0.126 Sum_probs=34.4
Q ss_pred ccccccC-----CCcC-ceeeEEEEecCCceecccccccccccccc
Q 000127 159 ERVWASG-----NSIP-RTSYQNYYAVNGNRFDSMFDVPCHLGLVS 198 (2127)
Q Consensus 159 e~~w~~~-----~~~~-~~~~~~y~~~~g~~f~s~~~~a~~lgl~~ 198 (2127)
..||..+ .+.+ +..++||++|.|++|+|+.||+.||.-.+
T Consensus 25 P~GW~re~~~R~~G~s~gk~DvYY~sP~GkkfRSk~ev~ryL~~~g 70 (97)
T 3c2i_A 25 PEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIMYFEKVG 70 (97)
T ss_dssp CTTCEEEEEECCSSTTTTCEEEEEECTTSCEECSHHHHHHHHHHHT
T ss_pred CCCCEEEEEEecCCCCCCcceEEEECCCCCEEECHHHHHHHHHHCC
Confidence 6899888 4445 78999999999999999999999995443
No 103
>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3
Probab=95.44 E-value=0.0094 Score=62.50 Aligned_cols=40 Identities=13% Similarity=0.138 Sum_probs=34.6
Q ss_pred ccccccC-----CCcC-ceeeEEEEecCCceecccccccccccccc
Q 000127 159 ERVWASG-----NSIP-RTSYQNYYAVNGNRFDSMFDVPCHLGLVS 198 (2127)
Q Consensus 159 e~~w~~~-----~~~~-~~~~~~y~~~~g~~f~s~~~~a~~lgl~~ 198 (2127)
..||..+ .+.+ +..++|||+|+|++|+|+.||+.||+-.+
T Consensus 39 P~GWkRe~~~RksG~Sagk~DVYY~SP~GKkfRSk~Ev~ryL~~~~ 84 (133)
T 1ub1_A 39 PEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVG 84 (133)
T ss_dssp TTBCEEEEEECCCSSSCCSEEEEEECTTSCEESSHHHHHHHHTTSC
T ss_pred CCCCEEEEEEecCCCCCCceeEEEECCCCCeeeCHHHHHHHHHHCC
Confidence 6899888 4445 89999999999999999999999996544
No 104
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=94.70 E-value=0.0073 Score=60.57 Aligned_cols=39 Identities=23% Similarity=0.594 Sum_probs=31.0
Q ss_pred CCCeEEecCCCCCCcccccCCCCCCCCCC----CccCcccccC
Q 000127 1166 DDNVLLCDTCDSGYHTYCLTPPLTRVPEG----NWYCPPCLSG 1204 (2127)
Q Consensus 1166 ~geLLlCD~CD~aYHl~CL~PPL~~VPeG----dW~CP~Cv~~ 1204 (2127)
+..|+.|+.|+.+||..|+.++...++.+ .|+||.|...
T Consensus 72 ~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 72 EKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQE 114 (117)
T ss_dssp GGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC--
T ss_pred CcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcCC
Confidence 45689999999999999999887655544 3999999865
No 105
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=94.07 E-value=0.0055 Score=74.63 Aligned_cols=50 Identities=20% Similarity=0.514 Sum_probs=36.9
Q ss_pred cccccCCCC-CCCeEEecCCCCCCcccccCCCCCCCCC-CCccCcccccCCC
Q 000127 1157 CKVCGIDKD-DDNVLLCDTCDSGYHTYCLTPPLTRVPE-GNWYCPPCLSGNC 1206 (2127)
Q Consensus 1157 CkVCg~~~d-~geLLlCD~CD~aYHl~CL~PPL~~VPe-GdW~CP~Cv~~~c 1206 (2127)
+.+|++..+ ++.|+.||.|+..||..|++-.-...+. +.|+|+.|.....
T Consensus 7 yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~ 58 (447)
T 3kv4_A 7 YCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHG 58 (447)
T ss_dssp ETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHC
T ss_pred EEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccC
Confidence 338887644 7899999999999999999833222222 5799999986633
No 106
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=93.75 E-value=0.035 Score=56.33 Aligned_cols=51 Identities=16% Similarity=0.393 Sum_probs=43.0
Q ss_pred ccCCCCCCcCcc--ccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccC
Q 000127 1144 ASEIPKAPWDEG--VCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYC 1198 (2127)
Q Consensus 1144 ~s~lPr~~w~dd--~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~C 1198 (2127)
+..+|+..|.+. .|.+|++... +.|..|+++||..|+.++|..-|...|+|
T Consensus 46 L~~~P~g~W~Cp~c~C~~C~k~~~----~~C~~Cp~sfC~~c~~g~l~~~~~~~~~c 98 (107)
T 4gne_A 46 LTQPPYGKWECPWHQCDECSSAAV----SFCEFCPHSFCKDHEKGALVPSALEGRLC 98 (107)
T ss_dssp CSSCCSSCCCCGGGBCTTTCSBCC----EECSSSSCEECTTTCTTSCEECTTTTCEE
T ss_pred CCcCCCCCEECCCCCCCcCCCCCC----cCcCCCCcchhhhccCCcceecCCCCcee
Confidence 456788889887 5677875433 88999999999999999999999999998
No 107
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=88.83 E-value=0.15 Score=50.81 Aligned_cols=38 Identities=26% Similarity=0.697 Sum_probs=29.4
Q ss_pred CeEEecCCCCCCcccccCCC------CCCCCCC-CccCcccccCC
Q 000127 1168 NVLLCDTCDSGYHTYCLTPP------LTRVPEG-NWYCPPCLSGN 1205 (2127)
Q Consensus 1168 eLLlCD~CD~aYHl~CL~PP------L~~VPeG-dW~CP~Cv~~~ 1205 (2127)
.|+.||.|+.+||..|..-. |..+|+. .|.||.|....
T Consensus 1 ~mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~ 45 (140)
T 2ku7_A 1 SMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 45 (140)
T ss_dssp CCCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTS
T ss_pred CccccccCCCccCCcccccCHHHHHHHhhccccceeeCccccccc
Confidence 37899999999999998733 1455643 69999998653
No 108
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=72.54 E-value=2.6 Score=46.33 Aligned_cols=46 Identities=11% Similarity=0.171 Sum_probs=31.3
Q ss_pred cccCCCC-CCCeEEecCCCCCCcccccCCCCCCCCCCC----ccCcccccC
Q 000127 1159 VCGIDKD-DDNVLLCDTCDSGYHTYCLTPPLTRVPEGN----WYCPPCLSG 1204 (2127)
Q Consensus 1159 VCg~~~d-~geLLlCD~CD~aYHl~CL~PPL~~VPeGd----W~CP~Cv~~ 1204 (2127)
-||+..+ .-.+|.|+.|.+.||..|+..+...+-.++ ..|..|..+
T Consensus 9 YCG~~~~~~~~mLqC~~C~qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~~ 59 (177)
T 3rsn_A 9 DEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHS 59 (177)
T ss_dssp --CTTCCTTSCEEECTTTCCEEEGGGGTCCCTTCCTTCCSEEEECTTTSTT
T ss_pred EcCCCCCCCceeEeeccccceecHHHhcccccCccccceeEEEEccccCCC
Confidence 4666544 557999999999999999986654443334 347777653
No 109
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=69.88 E-value=1.1 Score=44.90 Aligned_cols=40 Identities=20% Similarity=0.406 Sum_probs=31.4
Q ss_pred ccccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCcccccCCCC
Q 000127 1154 EGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSGNCK 1207 (2127)
Q Consensus 1154 dd~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~~c~ 1207 (2127)
+.+|.+|++. -|+.|+..||++|+.+| .|.|..|+...+.
T Consensus 7 C~~C~~C~~~-------~C~~C~~c~~~~~~~~~-------~~~~~~c~~~~~~ 46 (117)
T 4bbq_A 7 CRKCKACVQG-------ECGVCHYCRDMKKFGGP-------GRMKQSCVLRQCL 46 (117)
T ss_dssp CSCSHHHHSC-------CCSCSHHHHHSGGGTSC-------CCSCCCCGGGCCS
T ss_pred CCcCcCcCCc-------CCCCCCCCcCCcccCCC-------Cccccchhheeec
Confidence 5678888753 29999999999999876 4888888766554
No 110
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=62.14 E-value=2.1 Score=46.42 Aligned_cols=49 Identities=22% Similarity=0.630 Sum_probs=38.2
Q ss_pred CccccccccCCCCCCCeEEec--CCCCCCcccccCCCC-----CC-CCCCCccCcccccC
Q 000127 1153 DEGVCKVCGIDKDDDNVLLCD--TCDSGYHTYCLTPPL-----TR-VPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1153 ~dd~CkVCg~~~d~geLLlCD--~CD~aYHl~CL~PPL-----~~-VPeGdW~CP~Cv~~ 1204 (2127)
.+.+|.+|+ +++++++|| .|.+.|-..|+.--+ .+ +....|.|--|...
T Consensus 78 ~~~yC~wC~---~Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~ 134 (159)
T 3a1b_A 78 YQSYCTICC---GGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHK 134 (159)
T ss_dssp SBSSCTTTS---CCSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSS
T ss_pred CcceeeEec---CCCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCc
Confidence 355899997 788999999 899999999975322 11 44567999999866
No 111
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=57.27 E-value=1.8 Score=52.37 Aligned_cols=48 Identities=25% Similarity=0.770 Sum_probs=37.2
Q ss_pred ccccccccCCCCCCCeEEec--CCCCCCcccccCCCC-----CC-CCCCCccCcccccC
Q 000127 1154 EGVCKVCGIDKDDDNVLLCD--TCDSGYHTYCLTPPL-----TR-VPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1154 dd~CkVCg~~~d~geLLlCD--~CD~aYHl~CL~PPL-----~~-VPeGdW~CP~Cv~~ 1204 (2127)
+..|.+|+ +++++++|| .|.+.|-..|+.--+ .+ .....|.|--|...
T Consensus 93 ~~yCr~C~---~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 93 QSYCSICC---SGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp BCSCTTTC---CCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred cccceEcC---CCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 45899997 688999999 999999999976333 11 22347999999866
No 112
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.00 E-value=11 Score=36.21 Aligned_cols=51 Identities=18% Similarity=0.466 Sum_probs=31.5
Q ss_pred cCccccccccCCCC-CCCeEE-e--cCCCCCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1152 WDEGVCKVCGIDKD-DDNVLL-C--DTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1152 w~dd~CkVCg~~~d-~geLLl-C--D~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
.+...|.+|....+ ++.++. | .++-..||..||..=|.. .+...||.|...
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~--~~~~~CplCr~~ 67 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKS--SDTRCCELCKYE 67 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHH--HCCSBCSSSCCB
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhh--CCCCCCCCCCCe
Confidence 44568999975443 334442 2 222389999999843322 123489999876
No 113
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=46.94 E-value=10 Score=32.38 Aligned_cols=47 Identities=26% Similarity=0.557 Sum_probs=32.5
Q ss_pred ccccccccCCCCC-CCeEEecCCCCCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1154 EGVCKVCGIDKDD-DNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1154 dd~CkVCg~~~d~-geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
...|.+|...-.. +.......|.-.||..|+..-+.. ...||.|+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~----~~~CP~Cr~~ 52 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS----HSTCPLCRLT 52 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT----CCSCSSSCCC
T ss_pred CCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc----CCcCcCCCCE
Confidence 4579999755433 334444569999999999865544 3479999764
No 114
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=41.68 E-value=9.6 Score=45.96 Aligned_cols=32 Identities=31% Similarity=0.634 Sum_probs=24.0
Q ss_pred cccccccCCCCC-CCe--EEec--CCCCCCcccccCC
Q 000127 1155 GVCKVCGIDKDD-DNV--LLCD--TCDSGYHTYCLTP 1186 (2127)
Q Consensus 1155 d~CkVCg~~~d~-geL--LlCD--~CD~aYHl~CL~P 1186 (2127)
..|.+|-....+ +.+ ..|+ .|...||..||..
T Consensus 309 ~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~k 345 (381)
T 3k1l_B 309 LRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEE 345 (381)
T ss_dssp CSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHH
T ss_pred ccCcccceeecCCCCCccccccCCccCCccchHHHHH
Confidence 479999755443 333 5698 8999999999983
No 115
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=39.36 E-value=11 Score=36.83 Aligned_cols=36 Identities=22% Similarity=0.504 Sum_probs=23.3
Q ss_pred EEecCCCCCCcccccCCCCCCC-CCCCccCcccccCC
Q 000127 1170 LLCDTCDSGYHTYCLTPPLTRV-PEGNWYCPPCLSGN 1205 (2127)
Q Consensus 1170 LlCD~CD~aYHl~CL~PPL~~V-PeGdW~CP~Cv~~~ 1205 (2127)
+..-.|.-.||..|+..-+..- +...-.||.|+...
T Consensus 56 ~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~ 92 (114)
T 1v87_A 56 GRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY 92 (114)
T ss_dssp EEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBS
T ss_pred eecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCcc
Confidence 3355789999999998544211 12234699998763
No 116
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=38.93 E-value=30 Score=31.62 Aligned_cols=50 Identities=24% Similarity=0.436 Sum_probs=33.1
Q ss_pred CccccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCcccccCCC
Q 000127 1153 DEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSGNC 1206 (2127)
Q Consensus 1153 ~dd~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~~c 1206 (2127)
....|.+|...-.....+.--.|.-.||..|+..-+.. ...||.|+....
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~~ 63 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ----HDSCPVCRKSLT 63 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT----TCSCTTTCCCCC
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc----CCcCcCcCCccC
Confidence 34579999765443333333358889999998754432 247999987733
No 117
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.34 E-value=9.2 Score=34.98 Aligned_cols=48 Identities=27% Similarity=0.630 Sum_probs=33.6
Q ss_pred CccccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1153 DEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1153 ~dd~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
++..|.+|...-..+..+..-.|.-.||..|+..-+.. ...||.|+..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~----~~~CP~Cr~~ 69 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA----NRTCPICRAD 69 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH----CSSCTTTCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc----CCcCcCcCCc
Confidence 45679999865445555555569999999998854432 2379999865
No 118
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=35.70 E-value=22 Score=34.03 Aligned_cols=19 Identities=26% Similarity=0.821 Sum_probs=14.2
Q ss_pred CCCCCCCCCCCccCcccccC
Q 000127 1185 TPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1185 ~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
..+...+|+ +|.||.|-..
T Consensus 31 GT~f~~lPd-dw~CP~Cga~ 49 (70)
T 1dx8_A 31 GTPFVDLSD-SFMCPACRSP 49 (70)
T ss_dssp SCCGGGSCT-TCBCTTTCCB
T ss_pred CCchhhCCC-CCcCCCCCCC
Confidence 344566776 7999999876
No 119
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.66 E-value=17 Score=34.79 Aligned_cols=50 Identities=24% Similarity=0.446 Sum_probs=35.1
Q ss_pred CcCccccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1151 PWDEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1151 ~w~dd~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
+.....|.+|...-.. -+.|..|...||..|+..=|..... =.||.|...
T Consensus 12 ~~~i~~C~IC~~~i~~--g~~C~~C~h~fH~~Ci~kWl~~~~~--~~CP~Cr~~ 61 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQ--GQSCETCGIRMHLPCVAKYFQSNAE--PRCPHCNDY 61 (74)
T ss_dssp SSSSCBCSSSCCBCSS--SEECSSSCCEECHHHHHHHSTTCSS--CCCTTTCSC
T ss_pred cCCCCcCcchhhHccc--CCccCCCCchhhHHHHHHHHHhcCC--CCCCCCcCc
Confidence 3344679999755443 3578899999999999855544322 369999855
No 120
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=35.00 E-value=7.5 Score=34.87 Aligned_cols=48 Identities=23% Similarity=0.421 Sum_probs=32.6
Q ss_pred CccccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1153 DEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1153 ~dd~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
....|.+|...-..+..+..-.|.-.||..|+..-+.. ...||.|+..
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~ 60 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT----NKKCPICRVD 60 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH----CSBCTTTCSB
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc----CCCCcCcCcc
Confidence 34579999755444444555579999999998754332 2359999866
No 121
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=33.74 E-value=24 Score=34.80 Aligned_cols=20 Identities=25% Similarity=0.848 Sum_probs=15.1
Q ss_pred cCCCCCCCCCCCccCcccccC
Q 000127 1184 LTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1184 L~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
-..+...+|+ +|.||.|-..
T Consensus 50 pGT~fedlPd-dW~CPvCga~ 69 (81)
T 2kn9_A 50 AGTRWDDIPD-DWSCPDCGAA 69 (81)
T ss_dssp TTCCTTTSCT-TCCCTTTCCC
T ss_pred CCCChhHCCC-CCcCCCCCCC
Confidence 3345567877 7999999876
No 122
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=30.43 E-value=14 Score=31.54 Aligned_cols=48 Identities=23% Similarity=0.423 Sum_probs=32.8
Q ss_pred CccccccccCCC-CCCCeEEecCCCCCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1153 DEGVCKVCGIDK-DDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1153 ~dd~CkVCg~~~-d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
++..|.+|...- +.+.....-.|.-.||..|+..-+..- ..||.|...
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~ 52 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG----YRCPLCSGP 52 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT----CCCTTSCCS
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC----CcCCCCCCc
Confidence 346799997543 334456667799999999987433221 469999765
No 123
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=30.36 E-value=25 Score=31.36 Aligned_cols=17 Identities=35% Similarity=1.232 Sum_probs=13.5
Q ss_pred CCCCCCCCCccCcccccC
Q 000127 1187 PLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1187 PL~~VPeGdW~CP~Cv~~ 1204 (2127)
+..++|+ +|.||.|-..
T Consensus 23 ~f~~lP~-dw~CP~Cg~~ 39 (46)
T 6rxn_A 23 PFDQLPD-DWCCPVCGVS 39 (46)
T ss_dssp CGGGSCT-TCBCTTTCCB
T ss_pred chhhCCC-CCcCcCCCCc
Confidence 4567887 6999999876
No 124
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=30.18 E-value=8.6 Score=36.83 Aligned_cols=48 Identities=23% Similarity=0.453 Sum_probs=32.5
Q ss_pred CccccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1153 DEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1153 ~dd~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
.+..|.+|...-..+..+..-.|.-.||..|+..-+.. .-.||.|+..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~ 86 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK----SGTCPVCRCM 86 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT----TCBCTTTCCB
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc----CCcCcCcCcc
Confidence 44579999754444444444459999999998854433 2379999865
No 125
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=29.72 E-value=6.3 Score=35.98 Aligned_cols=49 Identities=29% Similarity=0.531 Sum_probs=31.1
Q ss_pred CccccccccCCCCCCCeEEecCCCC---CCcccccCCCCCCCCCCCccCcccccC
Q 000127 1153 DEGVCKVCGIDKDDDNVLLCDTCDS---GYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1153 ~dd~CkVCg~~~d~geLLlCD~CD~---aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
+...|.+|....++.-++-| .|.. .+|..||..=+.. .+.+.||.|...
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC-~C~gs~~~~H~~Cl~~W~~~--~~~~~C~~C~~~ 56 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRAC-GCTGELENVHRSCLSTWLTI--SRNTACQICGVV 56 (60)
T ss_dssp SCCEETTTTEECSCCCCCSC-CCSSGGGSCCHHHHHHHHHH--HTCSBCTTTCCB
T ss_pred CCCEeEEeecCCCCceecCc-CCCCchhhhHHHHHHHHHHh--CCCCccCCCCCe
Confidence 34579999755333323333 4544 9999998854432 245789999765
No 126
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=29.39 E-value=28 Score=34.52 Aligned_cols=35 Identities=34% Similarity=0.819 Sum_probs=27.7
Q ss_pred CCeEEecCCC-CCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1167 DNVLLCDTCD-SGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1167 geLLlCD~CD-~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
=+||+|..|. .+-|..|.. |..- ..+|.|..|...
T Consensus 44 W~L~lC~~Cgs~gtH~~Cs~--l~~~-~~~weC~~C~~v 79 (85)
T 1weq_A 44 WRLILCATCGSHGTHRDCSS--LRPN-SKKWECNECLPA 79 (85)
T ss_dssp TBCEECSSSCCCEECSGGGT--CCTT-CSCCCCTTTSCC
T ss_pred EEEEeCcccCCchhHHHHhC--CcCC-CCCEECCcCccc
Confidence 4789999997 689999988 4433 348999999854
No 127
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.17 E-value=20 Score=33.78 Aligned_cols=47 Identities=21% Similarity=0.638 Sum_probs=30.9
Q ss_pred ccccccccCCCC-----------C-CCeEEecCCCCCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1154 EGVCKVCGIDKD-----------D-DNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1154 dd~CkVCg~~~d-----------~-geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
++.|.+|...-+ . +..+.--.|.-.||..|+..=|..-. .||.|+..
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~----~CP~CR~~ 73 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN----RCPLCQQD 73 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCC----BCTTTCCB
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCC----CCCCcCCC
Confidence 456888865432 1 22333347999999999986554432 79999865
No 128
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=26.83 E-value=14 Score=41.83 Aligned_cols=47 Identities=21% Similarity=0.441 Sum_probs=32.8
Q ss_pred ccccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1154 EGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1154 dd~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
-..|.+|..---. -..|..|...||..|+.--+... +.=-||.|...
T Consensus 180 i~~C~iC~~iv~~--g~~C~~C~~~~H~~C~~~~~~~~--~~~~CP~C~~~ 226 (238)
T 3nw0_A 180 VKICNICHSLLIQ--GQSCETCGIRMHLPCVAKYFQSN--AEPRCPHCNDY 226 (238)
T ss_dssp CCBCTTTCSBCSS--CEECSSSCCEECHHHHHHHTTTC--SSCBCTTTCCB
T ss_pred CCcCcchhhHHhC--CcccCccChHHHHHHHHHHHHhC--CCCCCCCCCCC
Confidence 3469999754443 37899999999999987433332 23469998654
No 129
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=25.71 E-value=52 Score=29.83 Aligned_cols=19 Identities=26% Similarity=0.915 Sum_probs=14.5
Q ss_pred CCCCCCCCCCCccCcccccC
Q 000127 1185 TPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1185 ~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
..+...+|+ +|.||.|-..
T Consensus 27 Gt~f~~lP~-dw~CP~Cg~~ 45 (52)
T 1e8j_A 27 GTKFEDLPD-DWACPVCGAS 45 (52)
T ss_dssp SCCTTSSCT-TCCCSSSCCC
T ss_pred CCchHHCCC-CCcCCCCCCc
Confidence 344567777 7999999876
No 130
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=25.29 E-value=33 Score=31.10 Aligned_cols=18 Identities=28% Similarity=0.960 Sum_probs=13.7
Q ss_pred CCCCCCCCCCccCcccccC
Q 000127 1186 PPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1186 PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
.+...+|+ +|.||.|-..
T Consensus 27 t~f~~lP~-dw~CP~Cg~~ 44 (52)
T 1yk4_A 27 TKFEDLPD-DWVCPLCGAP 44 (52)
T ss_dssp CCGGGSCT-TCBCTTTCCB
T ss_pred CCHhHCCC-CCcCCCCCCC
Confidence 34457777 7999999876
No 131
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=25.11 E-value=35 Score=31.28 Aligned_cols=17 Identities=35% Similarity=1.161 Sum_probs=13.1
Q ss_pred CCCCCCCCCccCcccccC
Q 000127 1187 PLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1187 PL~~VPeGdW~CP~Cv~~ 1204 (2127)
+..++|+ +|.||.|-..
T Consensus 29 ~fe~lP~-dw~CP~Cg~~ 45 (54)
T 4rxn_A 29 DFKDIPD-DWVCPLCGVG 45 (54)
T ss_dssp CGGGSCT-TCBCTTTCCB
T ss_pred ChhHCCC-CCcCcCCCCc
Confidence 3456776 7999999876
No 132
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=25.04 E-value=28 Score=34.70 Aligned_cols=20 Identities=25% Similarity=0.870 Sum_probs=14.9
Q ss_pred cCCCCCCCCCCCccCcccccC
Q 000127 1184 LTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1184 L~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
-+.+...+|+ +|.||.|-..
T Consensus 58 pGT~fedlPd-dW~CPvCga~ 77 (87)
T 1s24_A 58 PGTRFEDIPD-DWCCPDCGAT 77 (87)
T ss_dssp SCCCGGGCCT-TCCCSSSCCC
T ss_pred CCCChhHCCC-CCCCCCCCCC
Confidence 3344567777 7999999876
No 133
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=24.79 E-value=35 Score=31.25 Aligned_cols=18 Identities=33% Similarity=1.021 Sum_probs=13.6
Q ss_pred CCCCCCCCCCccCcccccC
Q 000127 1186 PPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1186 PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
.+...+|+ +|.||.|-..
T Consensus 28 t~f~~lP~-dw~CP~Cga~ 45 (55)
T 2v3b_B 28 TRWEDIPA-DWVCPDCGVG 45 (55)
T ss_dssp CCGGGSCT-TCCCTTTCCC
T ss_pred CChhHCCC-CCcCCCCCCC
Confidence 34456776 7999999876
No 134
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.00 E-value=19 Score=32.72 Aligned_cols=47 Identities=28% Similarity=0.461 Sum_probs=30.9
Q ss_pred ccccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1154 EGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1154 dd~CkVCg~~~d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
+..|.+|...-.....+.--.|.-.||..|+..-+..- -.||.|+..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~----~~CP~Cr~~ 61 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR----KVCPLCNMP 61 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC----SBCTTTCCB
T ss_pred CCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC----CcCCCcCcc
Confidence 45799997654433333223588899999987543321 269999866
No 135
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=21.90 E-value=22 Score=36.62 Aligned_cols=28 Identities=21% Similarity=0.458 Sum_probs=0.0
Q ss_pred cCCCCCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1173 DTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1173 D~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
-.|.-.||..|+.+=|..- -.||.|+..
T Consensus 82 ~~C~H~FH~~CI~~Wl~~~----~~CP~Cr~~ 109 (117)
T 4a0k_B 82 GVCNHAFHFHCISRWLKTR----QVCPLDNRE 109 (117)
T ss_dssp --------------------------------
T ss_pred CCcCceEcHHHHHHHHHcC----CcCCCCCCe
Confidence 3688999999999655442 259999765
No 136
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=21.37 E-value=41 Score=33.02 Aligned_cols=38 Identities=26% Similarity=0.731 Sum_probs=28.4
Q ss_pred CCCCCCcCccccccccCCCCCCCeEEecC--CCCCCcccccC
Q 000127 1146 EIPKAPWDEGVCKVCGIDKDDDNVLLCDT--CDSGYHTYCLT 1185 (2127)
Q Consensus 1146 ~lPr~~w~dd~CkVCg~~~d~geLLlCD~--CD~aYHl~CL~ 1185 (2127)
.||+..|. -.|.+|... ..|-.+.|.. |...||..|..
T Consensus 10 NIp~~R~~-l~C~iC~~~-~~GAciqC~~~~C~~~fHv~CA~ 49 (87)
T 2lq6_A 10 NIPPARWK-LTCYLCKQK-GVGASIQCHKANCYTAFHVTCAQ 49 (87)
T ss_dssp CCCCCCCC-CCBTTTTBC-CSSCEEECSCTTTCCEEEHHHHH
T ss_pred CCChHHhc-CCCcCCCCC-CCcEeEecCCCCCCCcCcHHHHH
Confidence 46777785 479999642 2477788875 99999999954
No 137
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=21.27 E-value=14 Score=30.45 Aligned_cols=24 Identities=33% Similarity=0.704 Sum_probs=21.0
Q ss_pred chhhhccccccccccccccCcccc
Q 000127 1733 HCRRCHLSFSARNELEEHNDAKCI 1756 (2127)
Q Consensus 1733 HC~~CH~t~~~~~e~e~H~~~kC~ 1756 (2127)
-|..|.++|.....|..|.--+|.
T Consensus 10 ~C~~CgK~F~~~s~L~~H~py~C~ 33 (36)
T 1fv5_A 10 MCLPCGIAFSSPSTLEAHQAYYCS 33 (36)
T ss_dssp EETTTTEECSCHHHHHHHHHHTST
T ss_pred ECCCCCCccCCHhHccCcCCeECc
Confidence 788999999999999999866664
No 138
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=21.22 E-value=40 Score=39.77 Aligned_cols=41 Identities=22% Similarity=0.532 Sum_probs=32.0
Q ss_pred cCccccccccCCC-----------CCCCeEEecCCCCCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1152 WDEGVCKVCGIDK-----------DDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1152 w~dd~CkVCg~~~-----------d~geLLlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
|....|.|||... ++-..+.|..|...||+. -+.||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~------------R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYV------------RIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECC------------TTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeec------------CcCCcCCCCC
Confidence 8899999998642 233579999999999854 2579999766
No 139
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=20.87 E-value=22 Score=35.73 Aligned_cols=31 Identities=19% Similarity=0.434 Sum_probs=22.6
Q ss_pred EEecCCCCCCcccccCCCCCCCCCCCccCcccccC
Q 000127 1170 LLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2127)
Q Consensus 1170 LlCD~CD~aYHl~CL~PPL~~VPeGdW~CP~Cv~~ 1204 (2127)
+.--.|.-.||..|+.+=|.. .-.||.|+..
T Consensus 68 ~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~Cr~~ 98 (106)
T 3dpl_R 68 VAWGVCNHAFHFHCISRWLKT----RQVCPLDNRE 98 (106)
T ss_dssp EEEETTSCEEEHHHHHHHHTT----CSBCSSSCSB
T ss_pred EeecccCcEECHHHHHHHHHc----CCcCcCCCCc
Confidence 334579999999999865443 2369999865
Done!