BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000128
(2123 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 38.9 bits (89), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 216 IGDLKKLEILSLRHSDVE-ELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELY 274
IG + L IL+L H+D+ +P E+G L L +LDLS+ KL P +S+L+ L E+
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS-NKLDGRIPQAMSALTMLTEID 710
Query: 275 MGNS 278
+ N+
Sbjct: 711 LSNN 714
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 38.9 bits (89), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 216 IGDLKKLEILSLRHSDVE-ELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELY 274
IG + L IL+L H+D+ +P E+G L L +LDLS+ KL P +S+L+ L E+
Sbjct: 649 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS-NKLDGRIPQAMSALTMLTEID 707
Query: 275 MGNS 278
+ N+
Sbjct: 708 LSNN 711
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 34.7 bits (78), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 159 SENLSLRIPDLFFEGMTELRVLSFTGFRFPSLP-SSIGCLISLRTLTLESCLLGDVAT-- 215
SEN + + D F+ + L+ L + + L SL LTLE C L + T
Sbjct: 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171
Query: 216 IGDLKKLEILSLRHSDVEELPG-EIGQLTRLKLLDLSNCMKLKVIRPNVISSLS 268
+ L L +L LRH ++ + +L RLK+L++S+ L + PN + L+
Sbjct: 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 8/118 (6%)
Query: 138 RGIYEFPERLECPKLKLFVLFSENLS-LRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGC 196
R + P+ L P+ K L ++S LR+PD+ F ++ELRVL + R SL +
Sbjct: 41 RNLTHVPKDLP-PRTKALSLSQNSISELRMPDISF--LSELRVLRLSHNRIRSLDFHVFL 97
Query: 197 L-ISLRTLTLESCLLGDVA--TIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLS 251
L L + L +++ + L+ L+ LS DV + E G LT+L L LS
Sbjct: 98 FNQDLEYLDVSHNRLQNISCCPMASLRHLD-LSFNDFDVLPVCKEFGNLTKLTFLGLS 154
>pdb|2B9H|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Ste7
pdb|2B9I|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Msg5
pdb|2B9J|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Far1
pdb|2F49|A Chain A, Crystal Structure Of Fus3 In Complex With A Ste5 Peptide
pdb|2F49|B Chain B, Crystal Structure Of Fus3 In Complex With A Ste5 Peptide
pdb|2FA2|A Chain A, Crystal Structure Of Fus3 Without A Peptide From Ste5
pdb|2FA2|B Chain B, Crystal Structure Of Fus3 Without A Peptide From Ste5
Length = 353
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Query: 369 EDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLF 428
E + + ++ F L L +LKH +N+ I I +E+ N +++ L
Sbjct: 37 EIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEVYIIQELM 96
Query: 429 ---LHNLMRLEMVYRGQLTEHSFSKLRIIKVCQCDNLKH 464
LH ++ +M+ + + LR +KV N+ H
Sbjct: 97 QTDLHRVISTQMLSDDHIQYFIYQTLRAVKVLHGSNVIH 135
>pdb|2F9G|A Chain A, Crystal Structure Of Fus3 Phosphorylated On Tyr182
Length = 353
Score = 31.2 bits (69), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Query: 369 EDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLF 428
E + + ++ F L L +LKH +N+ I I +E+ N +++ L
Sbjct: 37 EIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEVYIIQELM 96
Query: 429 ---LHNLMRLEMVYRGQLTEHSFSKLRIIKVCQCDNLKH 464
LH ++ +M+ + + LR +KV N+ H
Sbjct: 97 QTDLHRVISTQMLSDDHIQYFIYQTLRAVKVLHGSNVIH 135
>pdb|2B9F|A Chain A, Crystal Structure Of Non-Phosphorylated Fus3
Length = 353
Score = 31.2 bits (69), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Query: 369 EDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLF 428
E + + ++ F L L +LKH +N+ I I +E+ N +++ L
Sbjct: 37 EIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEVYIIQELM 96
Query: 429 ---LHNLMRLEMVYRGQLTEHSFSKLRIIKVCQCDNLKH 464
LH ++ +M+ + + LR +KV N+ H
Sbjct: 97 QTDLHRVISTQMLSDDHIQYFIYQTLRAVKVLHGSNVIH 135
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 31.2 bits (69), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
Query: 166 IPDLFFEGMTELRVLSFTGFRFPSL-PSSIGCLISLRTLTLESCLLGDVATI-----GDL 219
IP+L + L L +G R + P S L SLR L L + VATI DL
Sbjct: 171 IPNL--TALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWL---MHAQVATIERNAFDDL 225
Query: 220 KKLEILSLRHSDVEELPGEI 239
K LE L+L H+++ LP ++
Sbjct: 226 KSLEELNLSHNNLMSLPHDL 245
>pdb|1JRX|A Chain A, Crystal Structure Of Arg402ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRX|B Chain B, Crystal Structure Of Arg402ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 30.8 bits (68), Expect = 9.1, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 892 EISECDKLEKLVPSSVS------LENLVTLEVSKCNELIHLMTLSTAESLVKLNRMNVID 945
EI+ DK + + ++ V +SK ++ I L TA+SLVKL +M ID
Sbjct: 398 EITTADKASAAILAQTGKSAYLIFDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGID 457
Query: 946 CKMLQQII 953
K L + +
Sbjct: 458 GKALTETV 465
>pdb|1LJ1|A Chain A, Crystal Structure Of Q363fR402A MUTANT FLAVOCYTOCHROME C3
pdb|1LJ1|B Chain B, Crystal Structure Of Q363fR402A MUTANT FLAVOCYTOCHROME C3
Length = 571
Score = 30.8 bits (68), Expect = 9.1, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 892 EISECDKLEKLVPSSVS------LENLVTLEVSKCNELIHLMTLSTAESLVKLNRMNVID 945
EI+ DK + + ++ V +SK ++ I L TA+SLVKL +M ID
Sbjct: 398 EITTADKASAAILAQTGKSAYLIFDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGID 457
Query: 946 CKMLQQII 953
K L + +
Sbjct: 458 GKALTETV 465
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,236,889
Number of Sequences: 62578
Number of extensions: 2243504
Number of successful extensions: 4724
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 4655
Number of HSP's gapped (non-prelim): 79
length of query: 2123
length of database: 14,973,337
effective HSP length: 114
effective length of query: 2009
effective length of database: 7,839,445
effective search space: 15749445005
effective search space used: 15749445005
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)