Query 000128
Match_columns 2123
No_of_seqs 950 out of 7916
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 19:41:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000128.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000128hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.3E-37 2.8E-42 412.0 17.5 277 2-307 391-676 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.8E-30 6.1E-35 364.7 33.0 474 4-637 418-909 (1153)
3 PLN00113 leucine-rich repeat r 100.0 2.1E-29 4.5E-34 358.9 30.5 512 128-764 69-587 (968)
4 PLN00113 leucine-rich repeat r 100.0 1E-27 2.2E-32 341.7 30.4 295 149-485 68-366 (968)
5 KOG4194 Membrane glycoprotein 99.8 4.8E-20 1E-24 215.9 8.5 294 127-485 51-351 (873)
6 KOG4194 Membrane glycoprotein 99.8 3.2E-20 6.9E-25 217.4 4.1 338 127-486 77-427 (873)
7 PLN03210 Resistant to P. syrin 99.8 8.8E-18 1.9E-22 238.2 28.6 188 127-329 557-755 (1153)
8 KOG0472 Leucine-rich repeat pr 99.8 7.4E-22 1.6E-26 221.7 -13.4 461 129-663 46-540 (565)
9 KOG0444 Cytoskeletal regulator 99.8 2.3E-20 4.9E-25 218.6 -4.2 151 127-281 31-186 (1255)
10 KOG0618 Serine/threonine phosp 99.8 3.8E-20 8.2E-25 229.3 -3.2 152 564-756 357-508 (1081)
11 KOG0444 Cytoskeletal regulator 99.8 1.8E-20 4E-25 219.4 -5.7 317 127-489 54-376 (1255)
12 KOG0472 Leucine-rich repeat pr 99.7 5.4E-21 1.2E-25 214.8 -13.1 159 148-318 43-202 (565)
13 KOG0618 Serine/threonine phosp 99.7 8.6E-19 1.9E-23 217.5 -2.3 100 152-253 47-147 (1081)
14 KOG0617 Ras suppressor protein 99.6 5.7E-17 1.2E-21 161.8 -5.0 165 142-318 25-192 (264)
15 KOG0617 Ras suppressor protein 99.5 3.9E-16 8.3E-21 156.0 -4.2 161 127-299 32-196 (264)
16 PRK15387 E3 ubiquitin-protein 99.3 1.4E-11 3E-16 161.3 16.7 155 130-315 203-358 (788)
17 KOG4341 F-box protein containi 99.3 9.4E-14 2E-18 159.2 -6.0 317 1583-2009 139-459 (483)
18 PRK15370 E3 ubiquitin-protein 99.3 3.2E-11 6.9E-16 159.5 15.6 175 128-328 178-353 (754)
19 PRK15387 E3 ubiquitin-protein 99.3 7.7E-11 1.7E-15 154.4 18.3 170 127-330 221-391 (788)
20 PRK15370 E3 ubiquitin-protein 99.2 2.6E-11 5.7E-16 160.2 13.5 143 150-316 178-321 (754)
21 KOG4341 F-box protein containi 99.2 4.4E-13 9.4E-18 153.8 -6.1 298 1751-2074 138-441 (483)
22 KOG4237 Extracellular matrix p 99.1 2.4E-11 5.1E-16 138.4 0.8 262 135-404 53-333 (498)
23 KOG4658 Apoptotic ATPase [Sign 99.0 4.2E-10 9.1E-15 151.2 5.8 128 173-310 521-653 (889)
24 KOG0532 Leucine-rich repeat (L 99.0 4.4E-11 9.6E-16 142.1 -3.4 175 130-318 77-253 (722)
25 KOG4237 Extracellular matrix p 98.9 2E-10 4.4E-15 130.9 -1.1 246 127-375 66-355 (498)
26 KOG0532 Leucine-rich repeat (L 98.9 1.4E-10 3.1E-15 137.9 -3.4 186 133-332 55-245 (722)
27 cd00116 LRR_RI Leucine-rich re 98.7 4.7E-09 1E-13 130.4 3.3 179 128-312 23-234 (319)
28 cd00116 LRR_RI Leucine-rich re 98.7 6.5E-09 1.4E-13 129.0 4.1 160 148-313 21-207 (319)
29 PF14580 LRR_9: Leucine-rich r 98.7 1.6E-08 3.5E-13 109.2 4.8 128 173-306 17-147 (175)
30 PF14580 LRR_9: Leucine-rich r 98.6 1.8E-08 3.9E-13 108.8 3.7 107 198-312 19-126 (175)
31 KOG1259 Nischarin, modulator o 98.6 4.5E-09 9.8E-14 115.1 -1.3 135 173-316 282-416 (490)
32 COG4886 Leucine-rich repeat (L 98.5 1.1E-07 2.5E-12 121.3 5.7 174 128-314 116-292 (394)
33 KOG1259 Nischarin, modulator o 98.5 2.1E-08 4.5E-13 110.1 -1.4 130 148-282 282-413 (490)
34 COG4886 Leucine-rich repeat (L 98.3 3.8E-07 8.2E-12 116.5 4.9 157 148-316 114-272 (394)
35 KOG3207 Beta-tubulin folding c 98.2 5E-07 1.1E-11 105.5 1.1 187 127-315 120-317 (505)
36 KOG3207 Beta-tubulin folding c 98.1 4.8E-07 1E-11 105.7 -0.8 179 127-312 145-339 (505)
37 PLN03150 hypothetical protein; 98.0 9.1E-06 2E-10 108.4 8.8 105 176-281 419-528 (623)
38 PRK15386 type III secretion pr 98.0 1.3E-05 2.8E-10 96.9 8.6 162 1777-2017 51-215 (426)
39 PRK15386 type III secretion pr 98.0 2E-05 4.3E-10 95.3 9.5 167 1847-2079 50-222 (426)
40 PLN03150 hypothetical protein; 97.9 1.5E-05 3.4E-10 106.2 8.1 104 199-310 419-526 (623)
41 PF13855 LRR_8: Leucine rich r 97.9 9.7E-06 2.1E-10 72.1 3.9 58 221-279 2-60 (61)
42 KOG1947 Leucine rich repeat pr 97.8 1.3E-06 2.7E-11 115.7 -4.3 255 1750-2077 187-445 (482)
43 PF13855 LRR_8: Leucine rich r 97.8 1.2E-05 2.6E-10 71.5 3.1 58 151-209 2-60 (61)
44 KOG2120 SCF ubiquitin ligase, 97.8 2.3E-06 5.1E-11 94.8 -2.1 119 883-1007 207-326 (419)
45 KOG1859 Leucine-rich repeat pr 97.8 3.5E-07 7.6E-12 112.1 -10.0 180 124-314 105-294 (1096)
46 KOG1947 Leucine rich repeat pr 97.7 2.1E-06 4.5E-11 113.6 -5.6 199 1775-2019 240-444 (482)
47 KOG1909 Ran GTPase-activating 97.6 1.2E-05 2.5E-10 92.2 0.3 113 196-312 90-226 (382)
48 KOG0531 Protein phosphatase 1, 97.6 6.6E-06 1.4E-10 105.1 -2.9 104 148-254 93-197 (414)
49 KOG2120 SCF ubiquitin ligase, 97.6 5.2E-06 1.1E-10 92.1 -3.7 110 911-1029 186-297 (419)
50 KOG0531 Protein phosphatase 1, 97.6 9.4E-06 2E-10 103.7 -2.3 128 149-281 71-199 (414)
51 KOG1909 Ran GTPase-activating 97.4 1.7E-05 3.6E-10 90.9 -2.0 181 128-312 92-311 (382)
52 KOG3665 ZYG-1-like serine/thre 97.4 8.9E-05 1.9E-09 98.1 3.0 126 128-254 122-261 (699)
53 PF12799 LRR_4: Leucine Rich r 97.3 0.00025 5.5E-09 57.5 4.2 40 221-261 2-41 (44)
54 PF12799 LRR_4: Leucine Rich r 97.2 0.00029 6.3E-09 57.2 3.4 36 176-211 2-37 (44)
55 KOG1859 Leucine-rich repeat pr 97.2 1E-05 2.2E-10 99.8 -8.2 126 150-281 164-292 (1096)
56 KOG4579 Leucine-rich repeat (L 97.0 7E-05 1.5E-09 74.1 -2.7 107 131-238 30-141 (177)
57 KOG3665 ZYG-1-like serine/thre 96.9 0.00055 1.2E-08 90.8 3.4 106 149-254 121-231 (699)
58 KOG2982 Uncharacterized conser 96.8 0.00021 4.6E-09 79.8 -1.3 41 390-434 221-261 (418)
59 KOG4579 Leucine-rich repeat (L 96.5 0.00025 5.5E-09 70.3 -2.5 102 175-278 27-133 (177)
60 KOG1644 U2-associated snRNP A' 96.5 0.0031 6.7E-08 67.4 5.2 103 199-308 43-149 (233)
61 PF00931 NB-ARC: NB-ARC domain 96.5 0.00081 1.8E-08 81.9 1.1 37 22-58 249-285 (287)
62 KOG2982 Uncharacterized conser 96.4 0.0011 2.5E-08 74.1 1.0 157 148-311 69-261 (418)
63 KOG1644 U2-associated snRNP A' 96.3 0.0059 1.3E-07 65.4 5.6 81 172-252 61-149 (233)
64 COG5238 RNA1 Ran GTPase-activa 95.1 0.015 3.3E-07 64.7 3.0 23 296-318 154-176 (388)
65 COG5238 RNA1 Ran GTPase-activa 93.8 0.03 6.6E-07 62.3 1.7 87 172-259 27-135 (388)
66 KOG2123 Uncharacterized conser 93.7 0.0037 8E-08 69.5 -5.2 105 197-305 18-123 (388)
67 KOG2739 Leucine-rich acidic nu 93.6 0.043 9.4E-07 61.8 2.7 59 174-233 42-104 (260)
68 PF00560 LRR_1: Leucine Rich R 92.1 0.065 1.4E-06 36.2 0.8 21 221-241 1-21 (22)
69 KOG3864 Uncharacterized conser 91.9 0.023 5.1E-07 61.2 -2.2 82 937-1026 102-184 (221)
70 KOG3864 Uncharacterized conser 91.9 0.059 1.3E-06 58.2 0.8 85 860-949 103-189 (221)
71 KOG2739 Leucine-rich acidic nu 91.8 0.091 2E-06 59.3 2.0 82 173-254 63-154 (260)
72 PF13306 LRR_5: Leucine rich r 89.3 0.97 2.1E-05 47.1 7.2 40 166-206 26-66 (129)
73 KOG2123 Uncharacterized conser 88.6 0.029 6.3E-07 62.7 -5.0 59 149-211 18-76 (388)
74 PF00560 LRR_1: Leucine Rich R 88.5 0.15 3.2E-06 34.5 0.2 19 177-195 2-20 (22)
75 PF13306 LRR_5: Leucine rich r 86.7 2 4.2E-05 44.8 7.6 106 166-277 3-112 (129)
76 PF13504 LRR_7: Leucine rich r 84.8 0.6 1.3E-05 29.3 1.4 16 221-236 2-17 (17)
77 KOG0473 Leucine-rich repeat pr 81.0 0.047 1E-06 59.6 -7.6 83 172-254 39-122 (326)
78 PF13504 LRR_7: Leucine rich r 78.6 1.2 2.6E-05 28.0 1.2 16 176-191 2-17 (17)
79 KOG0473 Leucine-rich repeat pr 77.3 0.1 2.2E-06 57.0 -6.4 59 173-231 63-122 (326)
80 smart00370 LRR Leucine-rich re 73.3 2.5 5.4E-05 29.9 1.8 19 220-238 2-20 (26)
81 smart00369 LRR_TYP Leucine-ric 73.3 2.5 5.4E-05 29.9 1.8 19 220-238 2-20 (26)
82 smart00369 LRR_TYP Leucine-ric 70.8 3.7 8.1E-05 29.0 2.2 23 242-265 1-23 (26)
83 smart00370 LRR Leucine-rich re 70.8 3.7 8.1E-05 29.0 2.2 23 242-265 1-23 (26)
84 KOG4308 LRR-containing protein 62.9 0.18 3.8E-06 64.7 -10.2 180 130-314 89-305 (478)
85 smart00367 LRR_CC Leucine-rich 60.0 5.1 0.00011 28.4 1.2 17 2058-2074 1-17 (26)
86 smart00367 LRR_CC Leucine-rich 52.1 5.7 0.00012 28.1 0.4 16 1976-1991 2-17 (26)
87 smart00364 LRR_BAC Leucine-ric 40.3 18 0.00038 25.8 1.3 17 221-237 3-19 (26)
88 smart00365 LRR_SD22 Leucine-ri 35.6 29 0.00062 24.8 1.8 16 220-235 2-17 (26)
89 PF13516 LRR_6: Leucine Rich r 20.3 53 0.0011 22.6 0.9 12 221-232 3-14 (24)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-37 Score=411.96 Aligned_cols=277 Identities=27% Similarity=0.370 Sum_probs=206.3
Q ss_pred CCCchhHHHHHHHhHhcCCCchhhHHHHhcccCCCCCccChhHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHcCCc
Q 000128 2 GGEDANVNSIIELSYNFLESEEAKSLFRLCGLLNGGSQIPIDALMRCGMGLGLLKGVYTLQEARKRVHMLVNFLKASRLL 81 (2123)
Q Consensus 2 ~~~~~~i~~~L~lSY~~Lp~~~lK~cFlyca~Fp~d~~i~~~~Li~~WiaeGfi~~~~~~~~~~~~~~~~i~~L~~rsll 81 (2123)
+|+++.|+++|++|||+||+ ++|.||+|||+|||||+|++++||.+||||||+++....+.+++.|++|+.+|++|+|+
T Consensus 391 ~~~~~~i~~iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll 469 (889)
T KOG4658|consen 391 SGMEESILPILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLL 469 (889)
T ss_pred CchhhhhHHhhhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHH
Confidence 47789999999999999996 59999999999999999999999999999999998766778999999999999999999
Q ss_pred ccCC---CcCeEEechhHHHHHHHHHHHHhhcccccEEecCCCcC----ccCCCCceEEEccCCCCccCCCCCCCCCceE
Q 000128 82 LDGD---AEECLKMHDIIHSIAASVATEELMFNMQNVADLKEELD----KKTHKDPTAISIPFRGIYEFPERLECPKLKL 154 (2123)
Q Consensus 82 ~~~~---~~~~~~mHDlv~dla~~i~~~e~~~~~~~~~~~~~~~~----~~~~~~l~~L~l~~n~~~~lp~~~~~~~Lr~ 154 (2123)
+... +..+|+|||+|||||.++|++.....-+.+...+.... ......+|++++.+|.+..++....+++|++
T Consensus 470 ~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~t 549 (889)
T KOG4658|consen 470 IEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRT 549 (889)
T ss_pred hhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccce
Confidence 8765 34689999999999999999331111143333221111 1115688999999999999998888899999
Q ss_pred EEeecCcC-CCccchhHhhCCCCccEEEeecC-CCCCCCcccCCCCCccEEEcCCCCCCCCccccCCCCCcEEEccCCCC
Q 000128 155 FVLFSENL-SLRIPDLFFEGMTELRVLSFTGF-RFPSLPSSIGCLISLRTLTLESCLLGDVATIGDLKKLEILSLRHSDV 232 (2123)
Q Consensus 155 L~l~~n~~-~~~~p~~~~~~l~~Lr~L~L~~n-~i~~lp~~i~~L~~Lr~L~L~~~~l~~p~~i~~L~~L~~L~L~~n~l 232 (2123)
|.+.+|.. ...++..||..++.||||||++| .+.++|++|+.|.|||||+++++. +
T Consensus 550 Lll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~----------------------I 607 (889)
T KOG4658|consen 550 LLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG----------------------I 607 (889)
T ss_pred EEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC----------------------c
Confidence 99999873 44788888999999999999986 466888888777777777666655 4
Q ss_pred cccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccccccccccccChhhhCCCCCCCEEEEe
Q 000128 233 EELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEVH 307 (2123)
Q Consensus 233 ~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 307 (2123)
+.+|.++++|++|.+|++..+..+..+| ++...|++||+|.+...... .......++.++.+|+.+...
T Consensus 608 ~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i~~~L~~Lr~L~l~~s~~~-----~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 608 SHLPSGLGNLKKLIYLNLEVTGRLESIP-GILLELQSLRVLRLPRSALS-----NDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred cccchHHHHHHhhheecccccccccccc-chhhhcccccEEEeeccccc-----cchhhHHhhhcccchhhheee
Confidence 4555555555555555555554333332 33445666666665543311 112345566666666666554
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.97 E-value=2.8e-30 Score=364.71 Aligned_cols=474 Identities=20% Similarity=0.243 Sum_probs=280.9
Q ss_pred CchhHHHHHHHhHhcCCCchhhHHHHhcccCCCCCccChhHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHcCCccc
Q 000128 4 EDANVNSIIELSYNFLESEEAKSLFRLCGLLNGGSQIPIDALMRCGMGLGLLKGVYTLQEARKRVHMLVNFLKASRLLLD 83 (2123)
Q Consensus 4 ~~~~i~~~L~lSY~~Lp~~~lK~cFlyca~Fp~d~~i~~~~Li~~WiaeGfi~~~~~~~~~~~~~~~~i~~L~~rsll~~ 83 (2123)
.+++|+++|++||++|+++..|.||+|||+||+++.+ +.|..|+|.+.+... ..++.|+++||++.
T Consensus 418 ~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~~-----------~~l~~L~~ksLi~~ 483 (1153)
T PLN03210 418 LDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDVN-----------IGLKNLVDKSLIHV 483 (1153)
T ss_pred ccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCch-----------hChHHHHhcCCEEE
Confidence 4678999999999999874589999999999998744 458889988765431 23888999999976
Q ss_pred CCCcCeEEechhHHHHHHHHHHHHhhcccccEEecCC--C----cCccCCCCceEEEccCCCCcc--CCCCC--CCCCce
Q 000128 84 GDAEECLKMHDIIHSIAASVATEELMFNMQNVADLKE--E----LDKKTHKDPTAISIPFRGIYE--FPERL--ECPKLK 153 (2123)
Q Consensus 84 ~~~~~~~~mHDlv~dla~~i~~~e~~~~~~~~~~~~~--~----~~~~~~~~l~~L~l~~n~~~~--lp~~~--~~~~Lr 153 (2123)
.. ++++|||++||||+++++++.....+..+..+. . .......+++.+++....+.+ +.... ++++|+
T Consensus 484 ~~--~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~ 561 (1153)
T PLN03210 484 RE--DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLL 561 (1153)
T ss_pred cC--CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCcccc
Confidence 43 479999999999999999873111111111110 0 001112455666655443332 11111 455566
Q ss_pred EEEeecCc------CCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcCCCCCC-CCccccCCCCCcEEE
Q 000128 154 LFVLFSEN------LSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLG-DVATIGDLKKLEILS 226 (2123)
Q Consensus 154 ~L~l~~n~------~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~~l~-~p~~i~~L~~L~~L~ 226 (2123)
.|.+..+. ....+|.++..-...||.|++.++.++.+|..+ ...+|++|++.+|.+. .+..+..+.+|++|+
T Consensus 562 ~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~ 640 (1153)
T PLN03210 562 FLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNID 640 (1153)
T ss_pred EEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEE
Confidence 65554432 112344443222234555555555555555544 3455555555555555 444555555555555
Q ss_pred ccCC-CCcccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccccccccccccChhhhCCCCCCCEEE
Q 000128 227 LRHS-DVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLE 305 (2123)
Q Consensus 227 L~~n-~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~ 305 (2123)
++++ .+..+| .++.+++|++|++++|..+..+|.. ++++++|+.|++++|..... .+..+ ++++|+.|+
T Consensus 641 Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~-------Lp~~i-~l~sL~~L~ 710 (1153)
T PLN03210 641 LRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLEI-------LPTGI-NLKSLYRLN 710 (1153)
T ss_pred CCCCCCcCcCC-ccccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcCc-------cCCcC-CCCCCCEEe
Confidence 5554 344444 2555555555555555545555554 55555555555554422111 11111 334444444
Q ss_pred EecCCCCCCChhhhccccceeeeccCCccCCCCCcccceeeecccccCccccchhHHHhccCCcEEecccccCccccccc
Q 000128 306 VHIPDAQVMPQDLLSVELERYRICIGDVWSWSGEHETSRRLKLSALNKCIYLGYGMQMLLKGIEDLYLDELNGFQNALLE 385 (2123)
Q Consensus 306 l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~p~~i~~~l~~L~~L~L~~~~~~~~~~~~ 385 (2123)
++++. ....+|. ...+|+.|+++++.. ..+|.
T Consensus 711 Lsgc~------------------------------------------~L~~~p~----~~~nL~~L~L~~n~i--~~lP~ 742 (1153)
T PLN03210 711 LSGCS------------------------------------------RLKSFPD----ISTNISWLDLDETAI--EEFPS 742 (1153)
T ss_pred CCCCC------------------------------------------Ccccccc----ccCCcCeeecCCCcc--ccccc
Confidence 43321 1001111 123455555555321 11222
Q ss_pred cCCCCCCCCccEEEeeccCCccEeeccccccCCCcCcccceeeccccccchhhhcCCCCcccCCCccEEEEecCCCCCCC
Q 000128 386 LEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLFLHNLMRLEMVYRGQLTEHSFSKLRIIKVCQCDNLKHL 465 (2123)
Q Consensus 386 l~~~~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l 465 (2123)
...+++|+.|.+.++........ ...++ +.....+++|+.|++.+|+.+..+
T Consensus 743 ---~~~l~~L~~L~l~~~~~~~l~~~------~~~l~-------------------~~~~~~~~sL~~L~Ls~n~~l~~l 794 (1153)
T PLN03210 743 ---NLRLENLDELILCEMKSEKLWER------VQPLT-------------------PLMTMLSPSLTRLFLSDIPSLVEL 794 (1153)
T ss_pred ---cccccccccccccccchhhcccc------ccccc-------------------hhhhhccccchheeCCCCCCcccc
Confidence 13455565555544321100000 00000 011123578999999998888888
Q ss_pred CChhhhhhcCCCcEEEecccccchhhhccCCcccccccccccccccceeecccCccccccccccCCCCCCCccccccccc
Q 000128 466 FSFPMARNLLQLQKLKVSFCESLKLIVGKESSETHNVHEIINFTQLHSLTLQCLPQLTSSGFDLERPLLSPTISATTLAF 545 (2123)
Q Consensus 466 p~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~l~~~~~~~~~~p~l~~~~~~~ 545 (2123)
|. .++++++|+.|++++|..++.++.. ..+++|+.|++++|..++.+ +.
T Consensus 795 P~--si~~L~~L~~L~Ls~C~~L~~LP~~-----------~~L~sL~~L~Ls~c~~L~~~--p~---------------- 843 (1153)
T PLN03210 795 PS--SIQNLHKLEHLEIENCINLETLPTG-----------INLESLESLDLSGCSRLRTF--PD---------------- 843 (1153)
T ss_pred Ch--hhhCCCCCCEEECCCCCCcCeeCCC-----------CCccccCEEECCCCCccccc--cc----------------
Confidence 86 5788999999999999888877632 24788999999999877665 10
Q ss_pred cceecccCcccccccccccCCCccceeeccccccccccccccccccccccCcceEEEecCCCcccccchhhHhhhhccce
Q 000128 546 EEVIAEDDSDESLFNNKVIFPNLEKLKLSSINIEKIWHDQYPLMLNSCSQNLTNLTVETCSRLKFLFSYSMVDSLVRLQQ 625 (2123)
Q Consensus 546 ~~~i~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~ 625 (2123)
..++|+.|+|++|+++.++.. ...+++|+.|++++|++++.++.. ...+++|+.
T Consensus 844 ------------------~~~nL~~L~Ls~n~i~~iP~s------i~~l~~L~~L~L~~C~~L~~l~~~--~~~L~~L~~ 897 (1153)
T PLN03210 844 ------------------ISTNISDLNLSRTGIEEVPWW------IEKFSNLSFLDMNGCNNLQRVSLN--ISKLKHLET 897 (1153)
T ss_pred ------------------cccccCEeECCCCCCccChHH------HhcCCCCCEEECCCCCCcCccCcc--cccccCCCe
Confidence 136789999999988876432 245899999999999999997653 456899999
Q ss_pred EEEeecCCccee
Q 000128 626 LEIRKCESMEAV 637 (2123)
Q Consensus 626 L~I~~C~~L~~i 637 (2123)
+++++|.+++.+
T Consensus 898 L~l~~C~~L~~~ 909 (1153)
T PLN03210 898 VDFSDCGALTEA 909 (1153)
T ss_pred eecCCCcccccc
Confidence 999999998765
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=2.1e-29 Score=358.90 Aligned_cols=512 Identities=18% Similarity=0.160 Sum_probs=360.7
Q ss_pred CCceEEEccCCCCc-cCCCCC-CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCC-CCCcccCCCCCccEEE
Q 000128 128 KDPTAISIPFRGIY-EFPERL-ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFP-SLPSSIGCLISLRTLT 204 (2123)
Q Consensus 128 ~~l~~L~l~~n~~~-~lp~~~-~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~-~lp~~i~~L~~Lr~L~ 204 (2123)
.+++.|++++|.+. .++..+ .+++|++|++++|.+.+.+|.++|..+++||+|++++|.++ .+|. +.+++|++|+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 47999999999887 444444 89999999999999988999998889999999999999987 4554 5789999999
Q ss_pred cCCCCCC--CCccccCCCCCcEEEccCCCCc-ccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccc
Q 000128 205 LESCLLG--DVATIGDLKKLEILSLRHSDVE-ELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTE 281 (2123)
Q Consensus 205 L~~~~l~--~p~~i~~L~~L~~L~L~~n~l~-~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~ 281 (2123)
+++|.+. .|..++++.+|++|++++|.+. .+|..++++++|++|++++|...+.+|.. ++++++|++|++++|.+.
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLS 225 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccC
Confidence 9999987 5788999999999999999876 78999999999999999999866677876 899999999999999887
Q ss_pred cccccccccChhhhCCCCCCCEEEEecCCCCC-CChhhhccccceeeeccCCccCCCCCcccceeeecccccCccccchh
Q 000128 282 WEIEGQSNASLVELKQLSRLTTLEVHIPDAQV-MPQDLLSVELERYRICIGDVWSWSGEHETSRRLKLSALNKCIYLGYG 360 (2123)
Q Consensus 282 ~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~-~~~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~p~~ 360 (2123)
+ ..+..++++++|++|+++.|.+.. +|..+ ..+.+|+.|.++++.-...+|.+
T Consensus 226 ~-------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-------------------~~l~~L~~L~L~~n~l~~~~p~~ 279 (968)
T PLN00113 226 G-------EIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-------------------GNLKNLQYLFLYQNKLSGPIPPS 279 (968)
T ss_pred C-------cCChhHhcCCCCCEEECcCceeccccChhH-------------------hCCCCCCEEECcCCeeeccCchh
Confidence 3 347788999999999999988753 34333 22334555666544333345666
Q ss_pred HHHhccCCcEEecccccCccccccccCCCCCCCCccEEEeeccCCccEeeccccccCCCcCcccceeeccccccchhhhc
Q 000128 361 MQMLLKGIEDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLFLHNLMRLEMVYR 440 (2123)
Q Consensus 361 i~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~ 440 (2123)
+.. +++|+.|++++|... ..+|.. +..+++|+.|++.+|.....++. ....+++|+.|++.++.-...+
T Consensus 280 l~~-l~~L~~L~Ls~n~l~-~~~p~~--~~~l~~L~~L~l~~n~~~~~~~~-----~~~~l~~L~~L~L~~n~l~~~~-- 348 (968)
T PLN00113 280 IFS-LQKLISLDLSDNSLS-GEIPEL--VIQLQNLEILHLFSNNFTGKIPV-----ALTSLPRLQVLQLWSNKFSGEI-- 348 (968)
T ss_pred Hhh-ccCcCEEECcCCeec-cCCChh--HcCCCCCcEEECCCCccCCcCCh-----hHhcCCCCCEEECcCCCCcCcC--
Confidence 654 678888888876543 233332 46788888888887754433332 2345777888887765322222
Q ss_pred CCCCcccCCCccEEEEecCCCCCCCCChhhhhhcCCCcEEEecccccchhhhccCCcccccccccccccccceeecccCc
Q 000128 441 GQLTEHSFSKLRIIKVCQCDNLKHLFSFPMARNLLQLQKLKVSFCESLKLIVGKESSETHNVHEIINFTQLHSLTLQCLP 520 (2123)
Q Consensus 441 ~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~fp~L~~L~l~~~~ 520 (2123)
+...+.+++|+.|+++++.-...+|. .+..+++|+.|+++++.....++. ....+++|+.|++.++.
T Consensus 349 -p~~l~~~~~L~~L~Ls~n~l~~~~p~--~~~~~~~L~~L~l~~n~l~~~~p~----------~~~~~~~L~~L~L~~n~ 415 (968)
T PLN00113 349 -PKNLGKHNNLTVLDLSTNNLTGEIPE--GLCSSGNLFKLILFSNSLEGEIPK----------SLGACRSLRRVRLQDNS 415 (968)
T ss_pred -ChHHhCCCCCcEEECCCCeeEeeCCh--hHhCcCCCCEEECcCCEecccCCH----------HHhCCCCCCEEECcCCE
Confidence 22235577888888887543334443 556778888888887754333321 12345677777776653
Q ss_pred cccccccccCCCCCCCccccccccccceecccCcccccccccccCCCccceeeccccccccccccccccccccccCcceE
Q 000128 521 QLTSSGFDLERPLLSPTISATTLAFEEVIAEDDSDESLFNNKVIFPNLEKLKLSSINIEKIWHDQYPLMLNSCSQNLTNL 600 (2123)
Q Consensus 521 ~L~~l~~~~~~~~~~p~l~~~~~~~~~~i~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~~l~~L~~L 600 (2123)
--..+ | .....+++|+.|++++|+++...+... ..+++|+.|
T Consensus 416 l~~~~----------p-----------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~-----~~l~~L~~L 457 (968)
T PLN00113 416 FSGEL----------P-----------------------SEFTKLPLVYFLDISNNNLQGRINSRK-----WDMPSLQML 457 (968)
T ss_pred eeeEC----------C-----------------------hhHhcCCCCCEEECcCCcccCccChhh-----ccCCCCcEE
Confidence 11111 0 011247888899999888776544322 247889999
Q ss_pred EEecCCCcccccchhhHhhhhccceEEEeecCCcceeeccCccccccccCCcceeeeeccCCCcccccccCCcccccccC
Q 000128 601 TVETCSRLKFLFSYSMVDSLVRLQQLEIRKCESMEAVIDTTDIEINSVEFPSLHHLRIVDCPNLRSFISVNSSEEKILHT 680 (2123)
Q Consensus 601 ~l~~c~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~i~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~ 680 (2123)
++++|.....++.. ...++|+.|++++|..... .+..+..+++|+.|++++|.-...+|
T Consensus 458 ~L~~n~~~~~~p~~---~~~~~L~~L~ls~n~l~~~------~~~~~~~l~~L~~L~Ls~N~l~~~~p------------ 516 (968)
T PLN00113 458 SLARNKFFGGLPDS---FGSKRLENLDLSRNQFSGA------VPRKLGSLSELMQLKLSENKLSGEIP------------ 516 (968)
T ss_pred ECcCceeeeecCcc---cccccceEEECcCCccCCc------cChhhhhhhccCEEECcCCcceeeCC------------
Confidence 99987765554432 2357889999988763222 22234578889999998876544443
Q ss_pred CCCCccccccccCccceeeeccccCcchhccccCCCCccCCccEEEeccCCcccccCCCcHHHHHhcCCccEEEEecCCC
Q 000128 681 DTQPLFDEKLVLPRLEVLSIDMMDNMRKIWHHQLALNSFSKLKALEVTNCGKLANIFPANIIMRRRLDRLEYLKVDGCAS 760 (2123)
Q Consensus 681 ~~~~~~~~~~~~~~Le~L~i~~c~~l~~i~~~~~~~~~l~~L~~L~i~~C~~L~~~~p~~~~~~~~l~~L~~L~i~~C~~ 760 (2123)
+....+++|+.|+|+++.-...+ +..+..+++|+.|++++|..... .|. .+..+++|+.|++++|+-
T Consensus 517 ------~~~~~l~~L~~L~Ls~N~l~~~~---p~~~~~l~~L~~L~Ls~N~l~~~-~p~---~l~~l~~L~~l~ls~N~l 583 (968)
T PLN00113 517 ------DELSSCKKLVSLDLSHNQLSGQI---PASFSEMPVLSQLDLSQNQLSGE-IPK---NLGNVESLVQVNISHNHL 583 (968)
T ss_pred ------hHHcCccCCCEEECCCCcccccC---ChhHhCcccCCEEECCCCccccc-CCh---hHhcCcccCEEeccCCcc
Confidence 13347788999999987543333 33456678999999999775444 455 357899999999999876
Q ss_pred ccee
Q 000128 761 VEEI 764 (2123)
Q Consensus 761 l~~i 764 (2123)
...+
T Consensus 584 ~~~~ 587 (968)
T PLN00113 584 HGSL 587 (968)
T ss_pred eeeC
Confidence 5544
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=1e-27 Score=341.66 Aligned_cols=295 Identities=19% Similarity=0.182 Sum_probs=199.6
Q ss_pred CCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCC-CCCcccC-CCCCccEEEcCCCCCCCCccccCCCCCcEEE
Q 000128 149 CPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFP-SLPSSIG-CLISLRTLTLESCLLGDVATIGDLKKLEILS 226 (2123)
Q Consensus 149 ~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~-~lp~~i~-~L~~Lr~L~L~~~~l~~p~~i~~L~~L~~L~ 226 (2123)
..+++.|++++|.+.+.++..+ ..+++|++|++++|.+. .+|..+. .+.+||+|++++|.+......+.+.+|++|+
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~~-~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~ 146 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSAI-FRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLD 146 (968)
T ss_pred CCcEEEEEecCCCccccCChHH-hCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEE
Confidence 3579999999999988777664 89999999999999998 7887765 9999999999999987322236789999999
Q ss_pred ccCCCCc-ccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccccccccccccChhhhCCCCCCCEEE
Q 000128 227 LRHSDVE-ELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLE 305 (2123)
Q Consensus 227 L~~n~l~-~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~ 305 (2123)
+++|.+. .+|..++++++|++|++++|...+.+|.. ++++++|++|++++|.+.+ ..+..++++++|+.|+
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~-------~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLVG-------QIPRELGQMKSLKWIY 218 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCCCCcC-------cCChHHcCcCCccEEE
Confidence 9999987 78999999999999999999866678876 8999999999999998873 3478899999999999
Q ss_pred EecCCCCC-CChhhhccccceeeeccCCccCCCCCcccceeeecccccCccccchhHHHhccCCcEEecccccCcccccc
Q 000128 306 VHIPDAQV-MPQDLLSVELERYRICIGDVWSWSGEHETSRRLKLSALNKCIYLGYGMQMLLKGIEDLYLDELNGFQNALL 384 (2123)
Q Consensus 306 l~~~~~~~-~~~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~p~~i~~~l~~L~~L~L~~~~~~~~~~~ 384 (2123)
++.|.+.. +|..+ ..+.+|+.|++.++.....+|..+.. +++|+.|+++++.... ..|
T Consensus 219 L~~n~l~~~~p~~l-------------------~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~-~~p 277 (968)
T PLN00113 219 LGYNNLSGEIPYEI-------------------GGLTSLNHLDLVYNNLTGPIPSSLGN-LKNLQYLFLYQNKLSG-PIP 277 (968)
T ss_pred CcCCccCCcCChhH-------------------hcCCCCCEEECcCceeccccChhHhC-CCCCCEEECcCCeeec-cCc
Confidence 99988753 34332 22334555555544333344555544 5677777777654332 222
Q ss_pred ccCCCCCCCCccEEEeeccCCccEeeccccccCCCcCcccceeeccccccchhhhcCCCCcccCCCccEEEEecCCCCCC
Q 000128 385 ELEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLFLHNLMRLEMVYRGQLTEHSFSKLRIIKVCQCDNLKH 464 (2123)
Q Consensus 385 ~l~~~~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~ 464 (2123)
. .+..+++|++|++.+|.....++. ....+++|+.|++.+..-.... +.....+++|+.|++.+|.-...
T Consensus 278 ~--~l~~l~~L~~L~Ls~n~l~~~~p~-----~~~~l~~L~~L~l~~n~~~~~~---~~~~~~l~~L~~L~L~~n~l~~~ 347 (968)
T PLN00113 278 P--SIFSLQKLISLDLSDNSLSGEIPE-----LVIQLQNLEILHLFSNNFTGKI---PVALTSLPRLQVLQLWSNKFSGE 347 (968)
T ss_pred h--hHhhccCcCEEECcCCeeccCCCh-----hHcCCCCCcEEECCCCccCCcC---ChhHhcCCCCCEEECcCCCCcCc
Confidence 1 135667777777776632222221 1123455555555543211111 11123455555555555432223
Q ss_pred CCChhhhhhcCCCcEEEeccc
Q 000128 465 LFSFPMARNLLQLQKLKVSFC 485 (2123)
Q Consensus 465 lp~~~~~~~L~~L~~L~l~~c 485 (2123)
+|. .+..+++|+.|++++|
T Consensus 348 ~p~--~l~~~~~L~~L~Ls~n 366 (968)
T PLN00113 348 IPK--NLGKHNNLTVLDLSTN 366 (968)
T ss_pred CCh--HHhCCCCCcEEECCCC
Confidence 332 3445555555555554
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.80 E-value=4.8e-20 Score=215.88 Aligned_cols=294 Identities=18% Similarity=0.166 Sum_probs=196.6
Q ss_pred CCCceEEEccCCCCccCCCC----CCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccE
Q 000128 127 HKDPTAISIPFRGIYEFPER----LECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRT 202 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp~~----~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~ 202 (2123)
.-..+-++.+.+.+..+... .-.+..++|++++|.+. .+...+|.++++|+.+++.+|.++.+|.......||+.
T Consensus 51 ~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~ 129 (873)
T KOG4194|consen 51 PCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEK 129 (873)
T ss_pred CCCceeeecCccccccccccccCCcCccceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhhhcccccccccceeE
Confidence 34566777777777654221 13556788999998887 45555678999999999999999999987777888999
Q ss_pred EEcCCCCCCCC--ccccCCCCCcEEEccCCCCcccccc-cCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcc
Q 000128 203 LTLESCLLGDV--ATIGDLKKLEILSLRHSDVEELPGE-IGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSF 279 (2123)
Q Consensus 203 L~L~~~~l~~p--~~i~~L~~L~~L~L~~n~l~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~ 279 (2123)
|+|.+|.|+.. +.+..+..|+.|||+.|.|+++|.. +..=.++++|++++|. ++.+-.+.|..+.+|-+|.+++|.
T Consensus 130 L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNr 208 (873)
T KOG4194|consen 130 LDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNR 208 (873)
T ss_pred EeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccCc
Confidence 99999988833 6788888899999999988888753 5555788999999988 888887778888899999999888
Q ss_pred cccccccccccChhhhCCCCCCCEEEEecCCCCCCChhhhccccceeeeccCCccCCCCCcccceeeecccccCccccch
Q 000128 280 TEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQVMPQDLLSVELERYRICIGDVWSWSGEHETSRRLKLSALNKCIYLGY 359 (2123)
Q Consensus 280 ~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~p~ 359 (2123)
++ .-.+..+++|++|+.|++..|.+..+.-. .+..+++++.+.+..+ ....+.+
T Consensus 209 it-------tLp~r~Fk~L~~L~~LdLnrN~irive~l------------------tFqgL~Sl~nlklqrN-~I~kL~D 262 (873)
T KOG4194|consen 209 IT-------TLPQRSFKRLPKLESLDLNRNRIRIVEGL------------------TFQGLPSLQNLKLQRN-DISKLDD 262 (873)
T ss_pred cc-------ccCHHHhhhcchhhhhhccccceeeehhh------------------hhcCchhhhhhhhhhc-CcccccC
Confidence 87 23366778888999988888876543111 1122334444444321 1112222
Q ss_pred hHHHhccCCcEEecccccCccccccccCCCCCCCCccEEEeeccCCccEeeccccccCCCcCcccceeeccccccchhhh
Q 000128 360 GMQMLLKGIEDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLFLHNLMRLEMVY 439 (2123)
Q Consensus 360 ~i~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~ 439 (2123)
+++..+.+++.|+|..+.. ..+-..+ +.++..|+.|+++.|. ++.+.. ..|
T Consensus 263 G~Fy~l~kme~l~L~~N~l-~~vn~g~--lfgLt~L~~L~lS~Na-I~rih~------------------------d~W- 313 (873)
T KOG4194|consen 263 GAFYGLEKMEHLNLETNRL-QAVNEGW--LFGLTSLEQLDLSYNA-IQRIHI------------------------DSW- 313 (873)
T ss_pred cceeeecccceeecccchh-hhhhccc--ccccchhhhhccchhh-hheeec------------------------chh-
Confidence 3333345566666655322 1222222 3455666666666552 111110 111
Q ss_pred cCCCCcccCCCccEEEEecCCCCCCCCChhhhhhcCCCcEEEeccc
Q 000128 440 RGQLTEHSFSKLRIIKVCQCDNLKHLFSFPMARNLLQLQKLKVSFC 485 (2123)
Q Consensus 440 ~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~~~L~~L~~L~l~~c 485 (2123)
...++|+.|++++ ++++.+++ ..+..|..|++|.++++
T Consensus 314 ------sftqkL~~LdLs~-N~i~~l~~-~sf~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 314 ------SFTQKLKELDLSS-NRITRLDE-GSFRVLSQLEELNLSHN 351 (873)
T ss_pred ------hhcccceeEeccc-cccccCCh-hHHHHHHHhhhhccccc
Confidence 2357888888887 67888877 56677888888888875
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.79 E-value=3.2e-20 Score=217.38 Aligned_cols=338 Identities=17% Similarity=0.161 Sum_probs=239.3
Q ss_pred CCCceEEEccCCCCccCCCC--CCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCC-cccCCCCCccEE
Q 000128 127 HKDPTAISIPFRGIYEFPER--LECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLP-SSIGCLISLRTL 203 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp~~--~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp-~~i~~L~~Lr~L 203 (2123)
+...+.|++++|.+..+... .++++|+.+.+..|.+. .+|... ....+|+.|+|.+|.|+++- +++.-++.||.|
T Consensus 77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alrsl 154 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALRSL 154 (873)
T ss_pred ccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccc-ccccceeEEeeeccccccccHHHHHhHhhhhhh
Confidence 56678899999888855433 38889999999888776 677632 44566889999999888764 467788889999
Q ss_pred EcCCCCCC-CC-ccccCCCCCcEEEccCCCCccccc-ccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCccc
Q 000128 204 TLESCLLG-DV-ATIGDLKKLEILSLRHSDVEELPG-EIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFT 280 (2123)
Q Consensus 204 ~L~~~~l~-~p-~~i~~L~~L~~L~L~~n~l~~lP~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~ 280 (2123)
||+.|.|+ .+ +++..-.++++|+|++|+|+.+-. .|..+.+|.+|.+++|+ +..+|..+|.+|++|+.|++..|.+
T Consensus 155 DLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 155 DLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred hhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccce
Confidence 99999888 44 677777888999999998887744 47888888888898888 8888888788899999998888877
Q ss_pred ccccccccccChhhhCCCCCCCEEEEecCCCCCCChhh--hccccceeeeccCC----ccCCCCCcccceeeeccccc-C
Q 000128 281 EWEIEGQSNASLVELKQLSRLTTLEVHIPDAQVMPQDL--LSVELERYRICIGD----VWSWSGEHETSRRLKLSALN-K 353 (2123)
Q Consensus 281 ~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~i~~~~----~~~~~~~~~~L~~L~L~~~~-~ 353 (2123)
.- ...-.+.+|+.|+.|.+..|++..+...+ .+.+++.+.+..+. .-.|...+..|+.|+++.+. .
T Consensus 234 ri-------ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ 306 (873)
T KOG4194|consen 234 RI-------VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ 306 (873)
T ss_pred ee-------ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhh
Confidence 51 11345778888888888888888887766 35677777776654 33466667778888887433 2
Q ss_pred ccccchhHHHhccCCcEEecccccCccccccccCCCCCCCCccEEEeeccCCccEeeccccccCCCcCcccceeeccccc
Q 000128 354 CIYLGYGMQMLLKGIEDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLFLHNLM 433 (2123)
Q Consensus 354 ~~~~p~~i~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~f~~L~~L~l~~~~ 433 (2123)
.+....|-+ .+.|+.|+|+++.... +++- .+..+..|++|.++.| .+.++.+ .....+.+|+.|++.+..
T Consensus 307 rih~d~Wsf--tqkL~~LdLs~N~i~~--l~~~-sf~~L~~Le~LnLs~N-si~~l~e----~af~~lssL~~LdLr~N~ 376 (873)
T KOG4194|consen 307 RIHIDSWSF--TQKLKELDLSSNRITR--LDEG-SFRVLSQLEELNLSHN-SIDHLAE----GAFVGLSSLHKLDLRSNE 376 (873)
T ss_pred eeecchhhh--cccceeEecccccccc--CChh-HHHHHHHhhhhccccc-chHHHHh----hHHHHhhhhhhhcCcCCe
Confidence 344455644 5788888888754422 2221 3466788888888887 3444432 123456777777777532
Q ss_pred cchhhhcCCCCcccCCCccEEEEecCCCCCCCCChhhhhhcCCCcEEEecccc
Q 000128 434 RLEMVYRGQLTEHSFSKLRIIKVCQCDNLKHLFSFPMARNLLQLQKLKVSFCE 486 (2123)
Q Consensus 434 ~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~~~L~~L~~L~l~~c~ 486 (2123)
--..+.++......+++|++|.+.+ ++++.+|. ..+..+++||+|++.++.
T Consensus 377 ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~k-rAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 377 LSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPK-RAFSGLEALEHLDLGDNA 427 (873)
T ss_pred EEEEEecchhhhccchhhhheeecC-ceeeecch-hhhccCcccceecCCCCc
Confidence 1111222223334488888888888 68888886 456788888888888753
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.78 E-value=8.8e-18 Score=238.24 Aligned_cols=188 Identities=22% Similarity=0.330 Sum_probs=152.7
Q ss_pred CCCceEEEccCCCC------c-cCCCCC-C-CCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCC
Q 000128 127 HKDPTAISIPFRGI------Y-EFPERL-E-CPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCL 197 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~------~-~lp~~~-~-~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L 197 (2123)
+.+++.|.+..+.. . .+|..+ . .++||.|.+.++.+. .+|..+ .+.+|+.|++.++.+..+|..+..+
T Consensus 557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~l 633 (1153)
T PLN03210 557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEKLWDGVHSL 633 (1153)
T ss_pred CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCccccccccccccC
Confidence 67888888865532 1 455554 3 357999999988765 788775 6799999999999999999999999
Q ss_pred CCccEEEcCCCC-CCCCccccCCCCCcEEEccCC-CCcccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEc
Q 000128 198 ISLRTLTLESCL-LGDVATIGDLKKLEILSLRHS-DVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYM 275 (2123)
Q Consensus 198 ~~Lr~L~L~~~~-l~~p~~i~~L~~L~~L~L~~n-~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l 275 (2123)
++|++|+++++. +..++.++.+++|++|++++| .+..+|..++++++|+.|++++|..++.+|.. + ++++|++|++
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~L 711 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNL 711 (1153)
T ss_pred CCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeC
Confidence 999999999876 665667899999999999998 67899999999999999999999889999986 3 8999999999
Q ss_pred cCcccccccccccccChhhhCCCCCCCEEEEecCCCCCCChhhhccccceeeec
Q 000128 276 GNSFTEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQVMPQDLLSVELERYRIC 329 (2123)
Q Consensus 276 ~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~ 329 (2123)
++|.....+ +. ..++|+.|+++.|.+..+|......+|+.|.+.
T Consensus 712 sgc~~L~~~-------p~---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~ 755 (1153)
T PLN03210 712 SGCSRLKSF-------PD---ISTNISWLDLDETAIEEFPSNLRLENLDELILC 755 (1153)
T ss_pred CCCCCcccc-------cc---ccCCcCeeecCCCcccccccccccccccccccc
Confidence 988644211 11 246789999999999988887766677666554
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.77 E-value=7.4e-22 Score=221.66 Aligned_cols=461 Identities=19% Similarity=0.173 Sum_probs=237.2
Q ss_pred CceEEEccCCCCccCCCCC-CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcCC
Q 000128 129 DPTAISIPFRGIYEFPERL-ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLES 207 (2123)
Q Consensus 129 ~l~~L~l~~n~~~~lp~~~-~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~ 207 (2123)
.+..+.+++|.+..+.+.. ++..+.+|.++.|... ..|+.+ +.+..++.++.++|.+..+|..++.+..|+.|+.++
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~-~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLS-QLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred chhhhhhccCchhhccHhhhcccceeEEEeccchhh-hCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccc
Confidence 3444555555555443333 4555555555555544 344444 445555555555555555555555555555555555
Q ss_pred CCCC-CCccccCCCCCcEEEccCCCCcccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCccccccccc
Q 000128 208 CLLG-DVATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEG 286 (2123)
Q Consensus 208 ~~l~-~p~~i~~L~~L~~L~L~~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~ 286 (2123)
|.+. .+++|+.+..|..|+..+|++..+|.+++++.+|..+++.+|+ +..+|++.+ +++.|++|+...|-+.
T Consensus 124 n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i-~m~~L~~ld~~~N~L~----- 196 (565)
T KOG0472|consen 124 NELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHI-AMKRLKHLDCNSNLLE----- 196 (565)
T ss_pred cceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHH-HHHHHHhcccchhhhh-----
Confidence 5544 4455555555555555555555555555555555555555555 455555422 2555555554444332
Q ss_pred ccccChhhhCCCCCCCEEEEecCCCCCCChhhhccccceeeeccCCc----cCCCCCcccceeeecccccCccccchhHH
Q 000128 287 QSNASLVELKQLSRLTTLEVHIPDAQVMPQDLLSVELERYRICIGDV----WSWSGEHETSRRLKLSALNKCIYLGYGMQ 362 (2123)
Q Consensus 287 ~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~~----~~~~~~~~~L~~L~L~~~~~~~~~p~~i~ 362 (2123)
..|.+++.+..|..|++..|.+..+|+.-....|..+.+..+.. -+....++++..|++.. +.....|..+-
T Consensus 197 ---tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~c 272 (565)
T KOG0472|consen 197 ---TLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEIC 272 (565)
T ss_pred ---cCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc-cccccCchHHH
Confidence 23455555555555555555555554322233333332221110 01112455677777773 34445677765
Q ss_pred HhccCCcEEecccccCccccccccCCCCCCCCccEEEeeccCCccEeeccccccCCCcCcccceeec----cccccchhh
Q 000128 363 MLLKGIEDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLFL----HNLMRLEMV 438 (2123)
Q Consensus 363 ~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~f~~L~~L~l----~~~~~l~~~ 438 (2123)
- +++|++|+++++.. ....++ +|.+ +|+.|.+.||+. +.+..+. ...+.-.-|++|.- .+...-+.-
T Consensus 273 l-LrsL~rLDlSNN~i-s~Lp~s---Lgnl-hL~~L~leGNPl-rTiRr~i--i~~gT~~vLKyLrs~~~~dglS~se~~ 343 (565)
T KOG0472|consen 273 L-LRSLERLDLSNNDI-SSLPYS---LGNL-HLKFLALEGNPL-RTIRREI--ISKGTQEVLKYLRSKIKDDGLSQSEGG 343 (565)
T ss_pred H-hhhhhhhcccCCcc-ccCCcc---cccc-eeeehhhcCCch-HHHHHHH--HcccHHHHHHHHHHhhccCCCCCCccc
Confidence 3 78899999998443 333344 4888 999999999852 2222111 01111122333322 011110000
Q ss_pred -------hc-CCCCcccCCCccEEEEecCCCCCCCCChhhhhh--cCCCcEEEecccccchhhhccCC------------
Q 000128 439 -------YR-GQLTEHSFSKLRIIKVCQCDNLKHLFSFPMARN--LLQLQKLKVSFCESLKLIVGKES------------ 496 (2123)
Q Consensus 439 -------~~-~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~~~--L~~L~~L~l~~c~~l~~i~~~~~------------ 496 (2123)
+. ......++...+.|.+++ .+++.+|.- .+.. -.-...++++.+ ++.+++..-.
T Consensus 344 ~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdE-Vfea~~~~~Vt~VnfskN-qL~elPk~L~~lkelvT~l~ls 420 (565)
T KOG0472|consen 344 TETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPDE-VFEAAKSEIVTSVNFSKN-QLCELPKRLVELKELVTDLVLS 420 (565)
T ss_pred ccccCCCCCCcccchhhhhhhhhhcccc-cccccCCHH-HHHHhhhcceEEEecccc-hHhhhhhhhHHHHHHHHHHHhh
Confidence 00 011223456778888887 688888862 2221 122456666663 4444432110
Q ss_pred --cccccccccccccccceeecccCccccccccccCCCCCCCccccccccccceecccCcccccccccccCCCccceeec
Q 000128 497 --SETHNVHEIINFTQLHSLTLQCLPQLTSSGFDLERPLLSPTISATTLAFEEVIAEDDSDESLFNNKVIFPNLEKLKLS 574 (2123)
Q Consensus 497 --~~~~~~~~~~~fp~L~~L~l~~~~~L~~l~~~~~~~~~~p~l~~~~~~~~~~i~~~~~~~~~~~~~~~l~~L~~L~L~ 574 (2123)
.-.........+++|..|++++ |-.-.+| .+...+-.|+.|+|+
T Consensus 421 nn~isfv~~~l~~l~kLt~L~L~N-----------N~Ln~LP-----------------------~e~~~lv~Lq~LnlS 466 (565)
T KOG0472|consen 421 NNKISFVPLELSQLQKLTFLDLSN-----------NLLNDLP-----------------------EEMGSLVRLQTLNLS 466 (565)
T ss_pred cCccccchHHHHhhhcceeeeccc-----------chhhhcc-----------------------hhhhhhhhhheeccc
Confidence 0001111122334444444443 2221112 011235569999999
Q ss_pred cccccccccccccccccccccCcceEEEecCCCcccccchhhHhhhhccceEEEeecCCcceeeccCccccccccCCcce
Q 000128 575 SINIEKIWHDQYPLMLNSCSQNLTNLTVETCSRLKFLFSYSMVDSLVRLQQLEIRKCESMEAVIDTTDIEINSVEFPSLH 654 (2123)
Q Consensus 575 ~~~l~~i~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~i~~~~~~~~~~~~l~~L~ 654 (2123)
.|.++.++.... ..+.|+.+-.++ +.+..+.+. ...++.+|..|++.++. +..+ +...+++.+|+
T Consensus 467 ~NrFr~lP~~~y------~lq~lEtllas~-nqi~~vd~~-~l~nm~nL~tLDL~nNd-lq~I------Pp~LgnmtnL~ 531 (565)
T KOG0472|consen 467 FNRFRMLPECLY------ELQTLETLLASN-NQIGSVDPS-GLKNMRNLTTLDLQNND-LQQI------PPILGNMTNLR 531 (565)
T ss_pred ccccccchHHHh------hHHHHHHHHhcc-ccccccChH-HhhhhhhcceeccCCCc-hhhC------Chhhcccccee
Confidence 997777644322 234455555454 777877554 56778999999997644 5555 22345899999
Q ss_pred eeeeccCCC
Q 000128 655 HLRIVDCPN 663 (2123)
Q Consensus 655 ~L~l~~c~~ 663 (2123)
+|.+++.|-
T Consensus 532 hLeL~gNpf 540 (565)
T KOG0472|consen 532 HLELDGNPF 540 (565)
T ss_pred EEEecCCcc
Confidence 999988763
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.76 E-value=2.3e-20 Score=218.62 Aligned_cols=151 Identities=25% Similarity=0.312 Sum_probs=86.0
Q ss_pred CCCceEEEccCCCCccCCCCC-CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCC--CCCcccCCCCCccEE
Q 000128 127 HKDPTAISIPFRGIYEFPERL-ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFP--SLPSSIGCLISLRTL 203 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp~~~-~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~--~lp~~i~~L~~Lr~L 203 (2123)
+++++.|.+....+..+|+.. .+.+|+.|.+.+|++. .+...+ +.++.||.+++.+|++. .+|..|.+|..|.+|
T Consensus 31 Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~-~vhGEL-s~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~l 108 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI-SVHGEL-SDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTIL 108 (1255)
T ss_pred hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH-hhhhhh-ccchhhHHHhhhccccccCCCCchhcccccceee
Confidence 445555555555555555554 5555555655555543 222222 45555666666666554 456566666666666
Q ss_pred EcCCCCCC-CCccccCCCCCcEEEccCCCCcccccc-cCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccc
Q 000128 204 TLESCLLG-DVATIGDLKKLEILSLRHSDVEELPGE-IGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTE 281 (2123)
Q Consensus 204 ~L~~~~l~-~p~~i~~L~~L~~L~L~~n~l~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~ 281 (2123)
||++|.++ .|..+..-+++-+|+|++|+|..+|.. +-+|+.|-+||+++|+ +..+|+. +.+|.+|++|.+++|.+.
T Consensus 109 DLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ-~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 109 DLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQ-IRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred ecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHH-HHHHhhhhhhhcCCChhh
Confidence 66666655 455555666666666666666666654 3455556666666665 5566665 556666666666665543
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.75 E-value=3.8e-20 Score=229.34 Aligned_cols=152 Identities=24% Similarity=0.350 Sum_probs=96.8
Q ss_pred cCCCccceeeccccccccccccccccccccccCcceEEEecCCCcccccchhhHhhhhccceEEEeecCCcceeeccCcc
Q 000128 564 IFPNLEKLKLSSINIEKIWHDQYPLMLNSCSQNLTNLTVETCSRLKFLFSYSMVDSLVRLQQLEIRKCESMEAVIDTTDI 643 (2123)
Q Consensus 564 ~l~~L~~L~L~~~~l~~i~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~i~~~~~~ 643 (2123)
.++.|+.|.+.+|.++.-. ++. +.++.+|+.|++++ +.|..+ |.+...+++.|++|++++ ++|+.+. +
T Consensus 357 ~~~~Lq~LylanN~Ltd~c---~p~--l~~~~hLKVLhLsy-NrL~~f-pas~~~kle~LeeL~LSG-NkL~~Lp--~-- 424 (1081)
T KOG0618|consen 357 NHAALQELYLANNHLTDSC---FPV--LVNFKHLKVLHLSY-NRLNSF-PASKLRKLEELEELNLSG-NKLTTLP--D-- 424 (1081)
T ss_pred hhHHHHHHHHhcCcccccc---hhh--hccccceeeeeecc-cccccC-CHHHHhchHHhHHHhccc-chhhhhh--H--
Confidence 3677888888888776542 221 35688999999998 677765 455667789999999988 4476652 2
Q ss_pred ccccccCCcceeeeeccCCCcccccccCCcccccccCCCCCccccccccCccceeeeccccCcchhccccCCCCccCCcc
Q 000128 644 EINSVEFPSLHHLRIVDCPNLRSFISVNSSEEKILHTDTQPLFDEKLVLPRLEVLSIDMMDNMRKIWHHQLALNSFSKLK 723 (2123)
Q Consensus 644 ~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Le~L~i~~c~~l~~i~~~~~~~~~l~~L~ 723 (2123)
....++.|++|... .+.+.++ ++...++.|+.+|++ |++|..+-. +...+. ++|+
T Consensus 425 --tva~~~~L~tL~ah-sN~l~~f-------------------Pe~~~l~qL~~lDlS-~N~L~~~~l-~~~~p~-p~Lk 479 (1081)
T KOG0618|consen 425 --TVANLGRLHTLRAH-SNQLLSF-------------------PELAQLPQLKVLDLS-CNNLSEVTL-PEALPS-PNLK 479 (1081)
T ss_pred --HHHhhhhhHHHhhc-CCceeec-------------------hhhhhcCcceEEecc-cchhhhhhh-hhhCCC-cccc
Confidence 22366667766652 2233333 466688899999997 467776521 222232 7899
Q ss_pred EEEeccCCcccccCCCcHHHHHhcCCccEEEEe
Q 000128 724 ALEVTNCGKLANIFPANIIMRRRLDRLEYLKVD 756 (2123)
Q Consensus 724 ~L~i~~C~~L~~~~p~~~~~~~~l~~L~~L~i~ 756 (2123)
.|++++...+. |... .+..+.++..+++.
T Consensus 480 yLdlSGN~~l~--~d~~--~l~~l~~l~~~~i~ 508 (1081)
T KOG0618|consen 480 YLDLSGNTRLV--FDHK--TLKVLKSLSQMDIT 508 (1081)
T ss_pred eeeccCCcccc--cchh--hhHHhhhhhheecc
Confidence 99999977643 3332 34444555444443
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.75 E-value=1.8e-20 Score=219.42 Aligned_cols=317 Identities=21% Similarity=0.239 Sum_probs=227.0
Q ss_pred CCCceEEEccCCCCccCCCCC-CCCCceEEEeecCcCC-CccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEE
Q 000128 127 HKDPTAISIPFRGIYEFPERL-ECPKLKLFVLFSENLS-LRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLT 204 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp~~~-~~~~Lr~L~l~~n~~~-~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~ 204 (2123)
..++.+|++.+|++..+-... .++.||++++..|++. ..+|.++| ++..|.+|||++|++++.|..+..-+++-+|+
T Consensus 54 lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLN 132 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIVLN 132 (1255)
T ss_pred HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEEEE
Confidence 668999999999998766555 8999999999999864 45899986 89999999999999999999999999999999
Q ss_pred cCCCCCC-CC-ccccCCCCCcEEEccCCCCcccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCccccc
Q 000128 205 LESCLLG-DV-ATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEW 282 (2123)
Q Consensus 205 L~~~~l~-~p-~~i~~L~~L~~L~L~~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~ 282 (2123)
|++|+|. .| +-+-+|..|-+|||++|++..+|..+.+|.+|++|++++|. +..+.-..+-.|++|++|.+++.+-+
T Consensus 133 LS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqRT- 210 (1255)
T KOG0444|consen 133 LSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQRT- 210 (1255)
T ss_pred cccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccccch-
Confidence 9999998 67 45679999999999999999999999999999999999998 44333222456788999999887654
Q ss_pred ccccccccChhhhCCCCCCCEEEEecCCCCCCChhh-hccccceeeeccCCccCCCCCcccceeeecccccCccccchhH
Q 000128 283 EIEGQSNASLVELKQLSRLTTLEVHIPDAQVMPQDL-LSVELERYRICIGDVWSWSGEHETSRRLKLSALNKCIYLGYGM 361 (2123)
Q Consensus 283 ~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~p~~i 361 (2123)
....|..+..|.+|+.++++.|++..+|.-+ ...+|+.|+++.+.. ..|.+. ...
T Consensus 211 -----l~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~i----------teL~~~-------~~~-- 266 (1255)
T KOG0444|consen 211 -----LDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKI----------TELNMT-------EGE-- 266 (1255)
T ss_pred -----hhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCce----------eeeecc-------HHH--
Confidence 2345778888999999999999999998766 455666666554331 111111 111
Q ss_pred HHhccCCcEEecccccCccccccccCCCCCCCCccEEEeeccCC-ccEeeccccccCCCcCcccceeeccccccchhhhc
Q 000128 362 QMLLKGIEDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNVCE-ILYIVNLVGWEHCNAFPLLESLFLHNLMRLEMVYR 440 (2123)
Q Consensus 362 ~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~~-~~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~ 440 (2123)
..+|+.|.++.+.. ..+|+ .+..++.|+.|...+|.. .+-+|. +.+.+.+|+.+...+ ++++-++
T Consensus 267 ---W~~lEtLNlSrNQL--t~LP~--avcKL~kL~kLy~n~NkL~FeGiPS-----GIGKL~~Levf~aan-N~LElVP- 332 (1255)
T KOG0444|consen 267 ---WENLETLNLSRNQL--TVLPD--AVCKLTKLTKLYANNNKLTFEGIPS-----GIGKLIQLEVFHAAN-NKLELVP- 332 (1255)
T ss_pred ---Hhhhhhhccccchh--ccchH--HHhhhHHHHHHHhccCcccccCCcc-----chhhhhhhHHHHhhc-cccccCc-
Confidence 24566666666332 22332 246677777776665531 111221 223344455554443 2344332
Q ss_pred CCCCcccCCCccEEEEecCCCCCCCCChhhhhhcCCCcEEEecccccch
Q 000128 441 GQLTEHSFSKLRIIKVCQCDNLKHLFSFPMARNLLQLQKLKVSFCESLK 489 (2123)
Q Consensus 441 ~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~~~L~~L~~L~l~~c~~l~ 489 (2123)
.+...+++|+.|.+.. +.|..+|. .+.-|+.|+.|++..++++.
T Consensus 333 --EglcRC~kL~kL~L~~-NrLiTLPe--aIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 333 --EGLCRCVKLQKLKLDH-NRLITLPE--AIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred --hhhhhhHHHHHhcccc-cceeechh--hhhhcCCcceeeccCCcCcc
Confidence 2234466777777764 67777876 66778888888888877764
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.74 E-value=5.4e-21 Score=214.79 Aligned_cols=159 Identities=25% Similarity=0.378 Sum_probs=133.6
Q ss_pred CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcCCCCCC-CCccccCCCCCcEEE
Q 000128 148 ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLG-DVATIGDLKKLEILS 226 (2123)
Q Consensus 148 ~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~~l~-~p~~i~~L~~L~~L~ 226 (2123)
.-..+..+++++|.+.. +-++. ..+..|.||++.+|.+.++|.+|+.+..++.|+.++|.++ .|+.++.+.+|+.|+
T Consensus 43 ~qv~l~~lils~N~l~~-l~~dl-~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 43 EQVDLQKLILSHNDLEV-LREDL-KNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLD 120 (565)
T ss_pred hhcchhhhhhccCchhh-ccHhh-hcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhh
Confidence 34567778888888763 33444 7889999999999999999999999999999999999988 788999999999999
Q ss_pred ccCCCCcccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccccccccccccChhhhCCCCCCCEEEE
Q 000128 227 LRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEV 306 (2123)
Q Consensus 227 L~~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l 306 (2123)
.++|.+.++|++|+.+..|..++..+|+ +..+|++ ++.+.+|..+++.+|.+. +.+.+.-+++.|++|+.
T Consensus 121 ~s~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~-~~~~~~l~~l~~~~n~l~--------~l~~~~i~m~~L~~ld~ 190 (565)
T KOG0472|consen 121 CSSNELKELPDSIGRLLDLEDLDATNNQ-ISSLPED-MVNLSKLSKLDLEGNKLK--------ALPENHIAMKRLKHLDC 190 (565)
T ss_pred ccccceeecCchHHHHhhhhhhhccccc-cccCchH-HHHHHHHHHhhccccchh--------hCCHHHHHHHHHHhccc
Confidence 9999999999999999999999998888 8889987 888888999988888776 34444445888999998
Q ss_pred ecCCCCCCChhh
Q 000128 307 HIPDAQVMPQDL 318 (2123)
Q Consensus 307 ~~~~~~~~~~~~ 318 (2123)
..|-++.+|+++
T Consensus 191 ~~N~L~tlP~~l 202 (565)
T KOG0472|consen 191 NSNLLETLPPEL 202 (565)
T ss_pred chhhhhcCChhh
Confidence 888888888776
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.70 E-value=8.6e-19 Score=217.51 Aligned_cols=100 Identities=30% Similarity=0.319 Sum_probs=51.6
Q ss_pred ceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcCCCCCC-CCccccCCCCCcEEEccCC
Q 000128 152 LKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLG-DVATIGDLKKLEILSLRHS 230 (2123)
Q Consensus 152 Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~~l~-~p~~i~~L~~L~~L~L~~n 230 (2123)
|++|++++|.+. .+|..+ ..+.+|+.|.++.|.|..+|.+++++.+|++|+|.+|.+. .|.++..+++|++|++++|
T Consensus 47 L~~l~lsnn~~~-~fp~~i-t~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N 124 (1081)
T KOG0618|consen 47 LKSLDLSNNQIS-SFPIQI-TLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFN 124 (1081)
T ss_pred eEEeeccccccc-cCCchh-hhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchh
Confidence 555555555443 344433 4455555555555555555555555555555555555544 4555555555555555555
Q ss_pred CCcccccccCCCCCccEEeccCC
Q 000128 231 DVEELPGEIGQLTRLKLLDLSNC 253 (2123)
Q Consensus 231 ~l~~lP~~i~~L~~L~~L~l~~~ 253 (2123)
.+..+|.-+..++.+..++.++|
T Consensus 125 ~f~~~Pl~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 125 HFGPIPLVIEVLTAEEELAASNN 147 (1081)
T ss_pred ccCCCchhHHhhhHHHHHhhhcc
Confidence 55555554444444444444444
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=5.7e-17 Score=161.84 Aligned_cols=165 Identities=25% Similarity=0.405 Sum_probs=129.8
Q ss_pred cCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcCCCCCC-CCccccCCC
Q 000128 142 EFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLG-DVATIGDLK 220 (2123)
Q Consensus 142 ~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~~l~-~p~~i~~L~ 220 (2123)
++|..++++++..|.+++|.++ .+|+.+ ..+.+|.+|++.+|+|+++|.+|+.++.||.|+++-|++. .|..||.++
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~-~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p 102 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLT-VVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFP 102 (264)
T ss_pred hcccccchhhhhhhhcccCcee-ecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCc
Confidence 5565567777777777777776 566665 6788888888888888888888888888888888888877 778888888
Q ss_pred CCcEEEccCCCCc--ccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccccccccccccChhhhCCC
Q 000128 221 KLEILSLRHSDVE--ELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQL 298 (2123)
Q Consensus 221 ~L~~L~L~~n~l~--~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L 298 (2123)
-|++||+.+|++. .+|..|..|+.|+.|+++.|. +..+|++ ++++++||.|.+++|.+. ..+.+++.+
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll--------~lpkeig~l 172 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLL--------SLPKEIGDL 172 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchh--------hCcHHHHHH
Confidence 8888888888776 678888888888888888887 7778877 788888888888877664 457788888
Q ss_pred CCCCEEEEecCCCCCCChhh
Q 000128 299 SRLTTLEVHIPDAQVMPQDL 318 (2123)
Q Consensus 299 ~~L~~L~l~~~~~~~~~~~~ 318 (2123)
+.|+.|.+.+|++..+|+++
T Consensus 173 t~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 173 TRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred HHHHHHhcccceeeecChhh
Confidence 88888888888888777765
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=3.9e-16 Score=155.96 Aligned_cols=161 Identities=25% Similarity=0.361 Sum_probs=148.5
Q ss_pred CCCceEEEccCCCCccCCCCC-CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEc
Q 000128 127 HKDPTAISIPFRGIYEFPERL-ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTL 205 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp~~~-~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L 205 (2123)
++++++|.+++|.+..+|+.+ ++.+|++|++++|++. .+|..+ +.+++||.|+++-|.+..+|..|+.++.|++||+
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhh-hhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence 678999999999999998888 8999999999999987 788887 8999999999999999999999999999999999
Q ss_pred CCCCCC---CCccccCCCCCcEEEccCCCCcccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCccccc
Q 000128 206 ESCLLG---DVATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEW 282 (2123)
Q Consensus 206 ~~~~l~---~p~~i~~L~~L~~L~L~~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~ 282 (2123)
.+|++. .|..|..+..|+.|.+++|.++-+|.++++|++||.|.++.|. +-++|.+ ++.++.|++|++.+|.++
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lrelhiqgnrl~- 186 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLRELHIQGNRLT- 186 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHHHHhcccceee-
Confidence 999987 6889999999999999999999999999999999999999999 7789998 999999999999999887
Q ss_pred ccccccccChhhhCCCC
Q 000128 283 EIEGQSNASLVELKQLS 299 (2123)
Q Consensus 283 ~~~~~~~~~~~~l~~L~ 299 (2123)
..+.+++++.
T Consensus 187 -------vlppel~~l~ 196 (264)
T KOG0617|consen 187 -------VLPPELANLD 196 (264)
T ss_pred -------ecChhhhhhh
Confidence 3466666653
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.32 E-value=1.4e-11 Score=161.34 Aligned_cols=155 Identities=25% Similarity=0.225 Sum_probs=95.9
Q ss_pred ceEEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcCCCC
Q 000128 130 PTAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCL 209 (2123)
Q Consensus 130 l~~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~~ 209 (2123)
-..|+++.+.+..+|..+ .++|+.|++.+|++. .+|. .+++|++|++++|.++.+|.. ..+|+.|++++|.
T Consensus 203 ~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred CcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCCc
Confidence 456777777777777655 246777777777665 4553 256777777777777777643 3466777777777
Q ss_pred CC-CCccccCCCCCcEEEccCCCCcccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCccccccccccc
Q 000128 210 LG-DVATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQS 288 (2123)
Q Consensus 210 l~-~p~~i~~L~~L~~L~L~~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~~~ 288 (2123)
++ .|.. ..+|+.|++++|+++.+|.. +++|+.|++++|. +..+|.. . .+|+.|++++|.+..
T Consensus 274 L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l-p---~~L~~L~Ls~N~L~~------ 336 (788)
T PRK15387 274 LTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL-P---SELCKLWAYNNQLTS------ 336 (788)
T ss_pred hhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCC-c---ccccccccccCcccc------
Confidence 66 3332 24566777777777777653 3567777777776 6666542 2 345666666666541
Q ss_pred ccChhhhCCCCCCCEEEEecCCCCCCC
Q 000128 289 NASLVELKQLSRLTTLEVHIPDAQVMP 315 (2123)
Q Consensus 289 ~~~~~~l~~L~~L~~L~l~~~~~~~~~ 315 (2123)
.+. + ..+|+.|+++.|.+..+|
T Consensus 337 --LP~-l--p~~Lq~LdLS~N~Ls~LP 358 (788)
T PRK15387 337 --LPT-L--PSGLQELSVSDNQLASLP 358 (788)
T ss_pred --ccc-c--ccccceEecCCCccCCCC
Confidence 111 1 135677777777666554
No 17
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.28 E-value=9.4e-14 Score=159.21 Aligned_cols=317 Identities=20% Similarity=0.192 Sum_probs=199.4
Q ss_pred cceEEEeccCCCCcccccCCCCCCccccCccEEEeccCCCccccCCcchhhccCCCcEEEEccccCcceecccCCCCccc
Q 000128 1583 DLKCLKLSLFPNLKEIWHVQPLPVSFFSNLRSLVIDDCMNFSSAIPANLLRSLNNLEKLEVTNCDSLEEVFHLEEPNADE 1662 (2123)
Q Consensus 1583 ~L~~L~l~~~~~l~~~W~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~ 1662 (2123)
.||.|.++||.....--. -.....++|++.|.+.+|.++++..-.+....+++|++|++.+|..++...-.
T Consensus 139 ~lk~LSlrG~r~v~~ssl--rt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk------- 209 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSL--RTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLK------- 209 (483)
T ss_pred ccccccccccccCCcchh--hHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHH-------
Confidence 477788888876652100 01234577888888888887777666666777778888888887777654210
Q ss_pred cccccCccccEeeccccccccccccccCccccCCCccEEEecCCCCcccccCCcccccccccccchhhHHhhhhhccCcc
Q 000128 1663 HYGSLFPKLRKLKLKDLPKLKRFCYFAKGIIELPFLSFMWIESCPNMVTFVSNSTFAHLTATEAPLEMIAEENILADIQP 1742 (2123)
Q Consensus 1663 ~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 1742 (2123)
.....+|+|++|.+++||..+. +|+..+ .+
T Consensus 210 ~la~gC~kL~~lNlSwc~qi~~-----~gv~~~-------~r-------------------------------------- 239 (483)
T KOG4341|consen 210 YLAEGCRKLKYLNLSWCPQISG-----NGVQAL-------QR-------------------------------------- 239 (483)
T ss_pred HHHHhhhhHHHhhhccCchhhc-----CcchHH-------hc--------------------------------------
Confidence 0123456666666666665544 111111 01
Q ss_pred ccccccccCchhhhhhcccccch--hhccccccccccCCccEEEEecccCccccCchhHHHhhccccccccccccccEEE
Q 000128 1743 LFDEKVGLPSLEELAILSMDSLR--KLWQDELSLHSFYNLKFLGVQKCNKLLNIFPCNMLERLQKLQKLQVLYCSSVREI 1820 (2123)
Q Consensus 1743 l~~~~~~~~~L~~L~l~~c~~l~--~i~~~~~~~~~~~~L~~L~i~~C~~L~~~~p~~~~~~l~~L~~L~i~~C~~l~~i 1820 (2123)
.+..++.+...||..+. .+-.- .....-+.++++..|..+++.--..+...+..||.|..++|..+.+.
T Consensus 240 ------G~~~l~~~~~kGC~e~~le~l~~~---~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~ 310 (483)
T KOG4341|consen 240 ------GCKELEKLSLKGCLELELEALLKA---AAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDE 310 (483)
T ss_pred ------cchhhhhhhhcccccccHHHHHHH---hccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchH
Confidence 12223344444444321 11110 13445566777778888876655555667888999999999887655
Q ss_pred eeccccCCCCcccccccCCcCCCCccccccccceecccccCcCcccCccccCCCCCccEEEecCCCceeecccccccccc
Q 000128 1821 FELRALSGRDTHTIKAAPLRESDASFVFPQLTSLSLWWLPRLKSFYPQVQISEWPMLKKLDVGGCAEVEIFASEVLSLQE 1900 (2123)
Q Consensus 1821 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~~~~~~ 1900 (2123)
+.. ++. ...++|+.|.+++|.++++.........|+.|+.+++.+|....+-+....
T Consensus 311 ~l~-aLg------------------~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sl---- 367 (483)
T KOG4341|consen 311 VLW-ALG------------------QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASL---- 367 (483)
T ss_pred HHH-HHh------------------cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhh----
Confidence 432 221 125889999999999988877666667889999999999876543211000
Q ss_pred ccccCccccccceeEeeeccccCCCccEEEcccccCcccccccCC-CCCCCCCCcceeeeccCCCccc-cCCCCcCCCCc
Q 000128 1901 THVDSQHNIQIPQYLFFVDKVAFPSLEELMLFRLPKLLHLWKGNS-HPSKVFPNLASLKLSECTKLEK-LVPSSMSFQNL 1978 (2123)
Q Consensus 1901 ~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~-~~~~~l~~L~~L~l~~C~~L~~-l~~~~~~l~~L 1978 (2123)
....|.|++|.|+.|...++-+.... ........|+.|++++|+.+++ .-.-....++|
T Consensus 368 -------------------s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~L 428 (483)
T KOG4341|consen 368 -------------------SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNL 428 (483)
T ss_pred -------------------ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCccc
Confidence 01146788999998887776643310 1124567788888888888765 33335557788
Q ss_pred cEEEEcCCCCCccCcccchhcccccccEEEE
Q 000128 1979 TTLEVSKCDGLINLVTCSTAESMVKLVRMSI 2009 (2123)
Q Consensus 1979 ~~L~i~~C~~L~~l~~~~~~~sl~~L~~L~i 2009 (2123)
+.+++.+|...+.=+...++..|+++++...
T Consensus 429 eri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 429 ERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred ceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 8888888888888777777777777766544
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.26 E-value=3.2e-11 Score=159.46 Aligned_cols=175 Identities=17% Similarity=0.275 Sum_probs=117.8
Q ss_pred CCceEEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcCC
Q 000128 128 KDPTAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLES 207 (2123)
Q Consensus 128 ~~l~~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~ 207 (2123)
.+...|.+.++.+..+|..+ .++++.|++++|.+. .+|..++ .+|++|++++|.++.+|..+. .+|+.|++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI-PEQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcC
Confidence 34567788777777777654 356788888888776 5776553 478888888888887776554 3688888888
Q ss_pred CCCC-CCccccCCCCCcEEEccCCCCcccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCccccccccc
Q 000128 208 CLLG-DVATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEG 286 (2123)
Q Consensus 208 ~~l~-~p~~i~~L~~L~~L~L~~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~ 286 (2123)
|.+. .|..+. .+|++|++++|+++.+|..+. .+|++|++++|. +..+|.. +. ++|+.|++++|.+..
T Consensus 251 N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~-lp--~sL~~L~Ls~N~Lt~---- 318 (754)
T PRK15370 251 NRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAH-LP--SGITHLNVQSNSLTA---- 318 (754)
T ss_pred CccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCccc-ch--hhHHHHHhcCCcccc----
Confidence 8877 555443 478888888888888877664 478888888877 6777754 32 467777777777652
Q ss_pred ccccChhhhCCCCCCCEEEEecCCCCCCChhhhccccceeee
Q 000128 287 QSNASLVELKQLSRLTTLEVHIPDAQVMPQDLLSVELERYRI 328 (2123)
Q Consensus 287 ~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i 328 (2123)
.+..+ .++|+.|+++.|.+..+|..+. .+|+.|.+
T Consensus 319 ----LP~~l--~~sL~~L~Ls~N~Lt~LP~~l~-~sL~~L~L 353 (754)
T PRK15370 319 ----LPETL--PPGLKTLEAGENALTSLPASLP-PELQVLDV 353 (754)
T ss_pred ----CCccc--cccceeccccCCccccCChhhc-CcccEEEC
Confidence 12112 2467777787777776665431 33444433
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.26 E-value=7.7e-11 Score=154.38 Aligned_cols=170 Identities=20% Similarity=0.117 Sum_probs=130.0
Q ss_pred CCCceEEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcC
Q 000128 127 HKDPTAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLE 206 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~ 206 (2123)
..+++.|++.+|.+..+|.. .++|++|++++|.+. .+|. ..++|+.|++++|.++.+|... ..|+.|+++
T Consensus 221 ~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls 290 (788)
T PRK15387 221 PAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTHLPALP---SGLCKLWIF 290 (788)
T ss_pred hcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccC-cccC----cccccceeeccCCchhhhhhch---hhcCEEECc
Confidence 45789999999999998864 689999999999887 5664 2568999999999999888643 568899999
Q ss_pred CCCCC-CCccccCCCCCcEEEccCCCCcccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccccccc
Q 000128 207 SCLLG-DVATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIE 285 (2123)
Q Consensus 207 ~~~l~-~p~~i~~L~~L~~L~L~~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~ 285 (2123)
+|.++ .|. .+.+|++|++++|+++.+|... .+|+.|++++|. +..+|. + ..+|++|++++|.+..
T Consensus 291 ~N~Lt~LP~---~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~-L~~LP~--l--p~~Lq~LdLS~N~Ls~--- 356 (788)
T PRK15387 291 GNQLTSLPV---LPPGLQELSVSDNQLASLPALP---SELCKLWAYNNQ-LTSLPT--L--PSGLQELSVSDNQLAS--- 356 (788)
T ss_pred CCccccccc---cccccceeECCCCccccCCCCc---ccccccccccCc-cccccc--c--ccccceEecCCCccCC---
Confidence 99988 444 2468999999999999988643 357788899988 777875 2 2589999999998872
Q ss_pred cccccChhhhCCCCCCCEEEEecCCCCCCChhhhccccceeeecc
Q 000128 286 GQSNASLVELKQLSRLTTLEVHIPDAQVMPQDLLSVELERYRICI 330 (2123)
Q Consensus 286 ~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~ 330 (2123)
.+.. ..+|+.|+++.|.+..+|... .+|+.+.+..
T Consensus 357 -----LP~l---p~~L~~L~Ls~N~L~~LP~l~--~~L~~LdLs~ 391 (788)
T PRK15387 357 -----LPTL---PSELYKLWAYNNRLTSLPALP--SGLKELIVSG 391 (788)
T ss_pred -----CCCC---CcccceehhhccccccCcccc--cccceEEecC
Confidence 1111 246778888888888776532 3455555443
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.25 E-value=2.6e-11 Score=160.25 Aligned_cols=143 Identities=22% Similarity=0.259 Sum_probs=113.3
Q ss_pred CCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcCCCCCC-CCccccCCCCCcEEEcc
Q 000128 150 PKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLG-DVATIGDLKKLEILSLR 228 (2123)
Q Consensus 150 ~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~~l~-~p~~i~~L~~L~~L~L~ 228 (2123)
.+...|+++++.+. .+|..+ .+.|+.|++++|.++.+|..+. .+|++|++++|.++ .|..+. .+|+.|+++
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACI---PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELS 249 (754)
T ss_pred cCceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECc
Confidence 45678999988876 577654 3579999999999999998765 58999999999998 565543 479999999
Q ss_pred CCCCcccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccccccccccccChhhhCCCCCCCEEEEec
Q 000128 229 HSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEVHI 308 (2123)
Q Consensus 229 ~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 308 (2123)
+|.+..+|..+. .+|+.|++++|+ +..+|.. +. .+|+.|++++|.+.. .+..+. ++|+.|+++.
T Consensus 250 ~N~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~-l~--~sL~~L~Ls~N~Lt~--------LP~~lp--~sL~~L~Ls~ 313 (754)
T PRK15370 250 INRITELPERLP--SALQSLDLFHNK-ISCLPEN-LP--EELRYLSVYDNSIRT--------LPAHLP--SGITHLNVQS 313 (754)
T ss_pred CCccCcCChhHh--CCCCEEECcCCc-cCccccc-cC--CCCcEEECCCCcccc--------Ccccch--hhHHHHHhcC
Confidence 999999998875 589999999998 8889876 43 589999999998862 122221 3678888888
Q ss_pred CCCCCCCh
Q 000128 309 PDAQVMPQ 316 (2123)
Q Consensus 309 ~~~~~~~~ 316 (2123)
|.+..+|.
T Consensus 314 N~Lt~LP~ 321 (754)
T PRK15370 314 NSLTALPE 321 (754)
T ss_pred CccccCCc
Confidence 88776654
No 21
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.20 E-value=4.4e-13 Score=153.85 Aligned_cols=298 Identities=20% Similarity=0.239 Sum_probs=191.5
Q ss_pred CchhhhhhcccccchhhccccccccccCCccEEEEecccCccccCchhHHHhhccccccccccccccEEEeeccccCCCC
Q 000128 1751 PSLEELAILSMDSLRKLWQDELSLHSFYNLKFLGVQKCNKLLNIFPCNMLERLQKLQKLQVLYCSSVREIFELRALSGRD 1830 (2123)
Q Consensus 1751 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~L~~L~i~~C~~L~~~~p~~~~~~l~~L~~L~i~~C~~l~~i~~~~~l~~~~ 1830 (2123)
..|++|.+.||.....-+-..+ ..+++++++|.+.+|.++++..-.++...+.+|+.|++..|.++++...+...+
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~-~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~--- 213 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTF-ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE--- 213 (483)
T ss_pred cccccccccccccCCcchhhHH-hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH---
Confidence 4678888888876543222111 467899999999999999877777778889999999999999887765431222
Q ss_pred cccccccCCcCCCCccccccccceecccccCcCcccCccccCCCCCccEEEecCCCceeecccccccc--cccc-ccCcc
Q 000128 1831 THTIKAAPLRESDASFVFPQLTSLSLWWLPRLKSFYPQVQISEWPMLKKLDVGGCAEVEIFASEVLSL--QETH-VDSQH 1907 (2123)
Q Consensus 1831 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~~~~--~~~~-~~~~~ 1907 (2123)
.+|+|++|++++|+.+++-........+..++.+...||..++.-....... .+.. ++.++
T Consensus 214 ----------------gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~ 277 (483)
T KOG4341|consen 214 ----------------GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQH 277 (483)
T ss_pred ----------------hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhh
Confidence 2799999999999999887666666778888888888888765221111100 0000 00000
Q ss_pred -ccccceeEeeeccccCCCccEEEcccccCcccccccCCCCCCCCCCcceeeeccCCCcccc--CCCCcCCCCccEEEEc
Q 000128 1908 -NIQIPQYLFFVDKVAFPSLEELMLFRLPKLLHLWKGNSHPSKVFPNLASLKLSECTKLEKL--VPSSMSFQNLTTLEVS 1984 (2123)
Q Consensus 1908 -~~~~~~~l~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l--~~~~~~l~~L~~L~i~ 1984 (2123)
+...+..++.+.. ....|+.|..++|..+.+.... ...++..+|+.|.+.+|..+.+. ..-..+.+.|+.+++.
T Consensus 278 c~~lTD~~~~~i~~-~c~~lq~l~~s~~t~~~d~~l~--aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e 354 (483)
T KOG4341|consen 278 CNQLTDEDLWLIAC-GCHALQVLCYSSCTDITDEVLW--ALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLE 354 (483)
T ss_pred hccccchHHHHHhh-hhhHhhhhcccCCCCCchHHHH--HHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccc
Confidence 0000011111100 1235777777777776665433 11256678888888888877662 3334557788888888
Q ss_pred CCCCCccCcccchhcccccccEEEEcccccchhhhccCcccccccccccccceeccccCCCCceeccCCeeeecCCccEE
Q 000128 1985 KCDGLINLVTCSTAESMVKLVRMSITDCKLIEEIIHPIREDVKDCIVFSQLKYLGLHCLPTLTSFCLGNYTLEFPSLEQV 2064 (2123)
Q Consensus 1985 ~C~~L~~l~~~~~~~sl~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~l~~L~~~~~~~~~~~~~~L~~~ 2064 (2123)
+|..+.+-.-.+++.+|+.|++|.++.|+.+.+--.-.. +...-....|..++|++||.++.-... ..-.|+.||.+
T Consensus 355 ~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l--~~~~c~~~~l~~lEL~n~p~i~d~~Le-~l~~c~~Leri 431 (483)
T KOG4341|consen 355 ECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHL--SSSSCSLEGLEVLELDNCPLITDATLE-HLSICRNLERI 431 (483)
T ss_pred ccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhh--hhccccccccceeeecCCCCchHHHHH-HHhhCccccee
Confidence 888777765567778888888888888877655411000 000123456888888888888776553 23457888888
Q ss_pred EeccCccccc
Q 000128 2065 IVMDCLKMMT 2074 (2123)
Q Consensus 2065 ~i~~C~~~~~ 2074 (2123)
+.++|+....
T Consensus 432 ~l~~~q~vtk 441 (483)
T KOG4341|consen 432 ELIDCQDVTK 441 (483)
T ss_pred eeechhhhhh
Confidence 8888887754
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.08 E-value=2.4e-11 Score=138.38 Aligned_cols=262 Identities=17% Similarity=0.144 Sum_probs=142.1
Q ss_pred ccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCC-CcccCCCCCccEEEcCC-CCCC-
Q 000128 135 IPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSL-PSSIGCLISLRTLTLES-CLLG- 211 (2123)
Q Consensus 135 l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~l-p~~i~~L~~Lr~L~L~~-~~l~- 211 (2123)
-++.++.++|..+ -+....+.+..|.|+ .+|+..|+.+++||.|||++|.|+.+ |++|..|+.|-.|-+.+ |+|+
T Consensus 53 Cr~~GL~eVP~~L-P~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 53 CRGKGLTEVPANL-PPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred ccCCCcccCcccC-CCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence 3344455566544 234556677777776 67777777777777777777777755 66777777766666655 6677
Q ss_pred CC-ccccCCCCCcEEEccCCCCccccc-ccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccc------cc
Q 000128 212 DV-ATIGDLKKLEILSLRHSDVEELPG-EIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTE------WE 283 (2123)
Q Consensus 212 ~p-~~i~~L~~L~~L~L~~n~l~~lP~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~------~~ 283 (2123)
.| ..|++|..|+.|.+.-|++.-++. .+..|++|..|.+..|. +..++.+.+..+..++++.+..|.+. |.
T Consensus 131 l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wl 209 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWL 209 (498)
T ss_pred hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchh
Confidence 44 567777777777777777775543 46777777777777776 67777766777777777776665421 11
Q ss_pred cccccccChhhhCCCCCCCEEEEecCCCCCCChhhh---ccccce-eeec---cCC-ccCCCCCcccceeeecccccCcc
Q 000128 284 IEGQSNASLVELKQLSRLTTLEVHIPDAQVMPQDLL---SVELER-YRIC---IGD-VWSWSGEHETSRRLKLSALNKCI 355 (2123)
Q Consensus 284 ~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~---~~~L~~-l~i~---~~~-~~~~~~~~~~L~~L~L~~~~~~~ 355 (2123)
.. .....+.+++..+...-..+...++..++...+ ...+.+ +.-. .+. .-..+.++++|+.+.++++.-..
T Consensus 210 a~-~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~ 288 (498)
T KOG4237|consen 210 AD-DLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR 288 (498)
T ss_pred hh-HHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch
Confidence 00 000112222222222222222222222221110 001111 0000 000 00113456677777777433222
Q ss_pred ccchhHHHhccCCcEEecccccCccccccccCCCCCCCCccEEEeeccC
Q 000128 356 YLGYGMQMLLKGIEDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNVC 404 (2123)
Q Consensus 356 ~~p~~i~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~ 404 (2123)
.-+.|+.. ...++.|+|..+.. ..+-.. .+.++..|+.|++.+|.
T Consensus 289 i~~~aFe~-~a~l~eL~L~~N~l-~~v~~~--~f~~ls~L~tL~L~~N~ 333 (498)
T KOG4237|consen 289 IEDGAFEG-AAELQELYLTRNKL-EFVSSG--MFQGLSGLKTLSLYDNQ 333 (498)
T ss_pred hhhhhhcc-hhhhhhhhcCcchH-HHHHHH--hhhccccceeeeecCCe
Confidence 22444443 56777788777432 121111 24677888888888873
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.96 E-value=4.2e-10 Score=151.21 Aligned_cols=128 Identities=23% Similarity=0.269 Sum_probs=98.2
Q ss_pred CCCCccEEEeecCCCCCCCcccCCCCCccEEEcCCCC--CC-CC-ccccCCCCCcEEEccCC-CCcccccccCCCCCccE
Q 000128 173 GMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCL--LG-DV-ATIGDLKKLEILSLRHS-DVEELPGEIGQLTRLKL 247 (2123)
Q Consensus 173 ~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~~--l~-~p-~~i~~L~~L~~L~L~~n-~l~~lP~~i~~L~~L~~ 247 (2123)
.....|.+.+.+|.+..++.+..+ +.|++|-+.+|. +. .+ ..|..++.|++||+++| .+.++|..|++|.+||+
T Consensus 521 ~~~~~rr~s~~~~~~~~~~~~~~~-~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHIAGSSEN-PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred chhheeEEEEeccchhhccCCCCC-CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 445667777777777666655443 367777777775 44 32 45778888999999987 78899999999999999
Q ss_pred EeccCCCCCcccChhhhCCCCCCCEEEccCcccccccccccccChhhhCCCCCCCEEEEecCC
Q 000128 248 LDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEVHIPD 310 (2123)
Q Consensus 248 L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 310 (2123)
|+++++. +..+|.+ +++|+.|.+|++..+... ...+.-...|.+||+|.+....
T Consensus 600 L~L~~t~-I~~LP~~-l~~Lk~L~~Lnl~~~~~l-------~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 600 LDLSDTG-ISHLPSG-LGNLKKLIYLNLEVTGRL-------ESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccccCCC-ccccchH-HHHHHhhheecccccccc-------ccccchhhhcccccEEEeeccc
Confidence 9999999 9999998 999999999998876433 1124555669999999997654
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.95 E-value=4.4e-11 Score=142.13 Aligned_cols=175 Identities=21% Similarity=0.333 Sum_probs=95.6
Q ss_pred ceEEEccCCCCccCCCCC-CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcCCC
Q 000128 130 PTAISIPFRGIYEFPERL-ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESC 208 (2123)
Q Consensus 130 l~~L~l~~n~~~~lp~~~-~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~ 208 (2123)
....+++.|++.++|..+ .+..|+.+.+..|.+. .+|..+ ..+..|.+|+|+.|+++.+|..++.|+ |++|-+++|
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC
Confidence 344555555555555544 3444555555555543 344443 455555555565555555555555543 555555555
Q ss_pred CCC-CCccccCCCCCcEEEccCCCCcccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccccccccc
Q 000128 209 LLG-DVATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQ 287 (2123)
Q Consensus 209 ~l~-~p~~i~~L~~L~~L~L~~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~~ 287 (2123)
+++ .|..++.+.+|..||.+.|.+..+|..++.+.+|+.|.++.|+ +..+|++ +..| .|..||++.|.+.
T Consensus 154 kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~~L-pLi~lDfScNkis------ 224 (722)
T KOG0532|consen 154 KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LCSL-PLIRLDFSCNKIS------ 224 (722)
T ss_pred ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-HhCC-ceeeeecccCcee------
Confidence 555 5555555555555555555555555555555555555555555 4555555 3433 3555555555554
Q ss_pred cccChhhhCCCCCCCEEEEecCCCCCCChhh
Q 000128 288 SNASLVELKQLSRLTTLEVHIPDAQVMPQDL 318 (2123)
Q Consensus 288 ~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~ 318 (2123)
..+-.+.+|++|++|.|..|.++.-|..+
T Consensus 225 --~iPv~fr~m~~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 225 --YLPVDFRKMRHLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred --ecchhhhhhhhheeeeeccCCCCCChHHH
Confidence 23455555566666666555555555544
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.89 E-value=2e-10 Score=130.91 Aligned_cols=246 Identities=18% Similarity=0.161 Sum_probs=166.2
Q ss_pred CCCceEEEccCCCCccCCCCC--CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeec-CCCCCCCc-ccCCCCCccE
Q 000128 127 HKDPTAISIPFRGIYEFPERL--ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTG-FRFPSLPS-SIGCLISLRT 202 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp~~~--~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~-n~i~~lp~-~i~~L~~Lr~ 202 (2123)
+.....+.+..|.|..+|+.. .+++||.|+++.|.|+ .|.++.|.+++.|-.|-+.+ |.|+.+|+ .|+.|..|+-
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR 144 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence 678899999999999999877 8999999999999998 45555679999987776666 89999995 6889999999
Q ss_pred EEcCCCCCC-C-CccccCCCCCcEEEccCCCCccccc-ccCCCCCccEEeccCCCCC------------cccChhhhCCC
Q 000128 203 LTLESCLLG-D-VATIGDLKKLEILSLRHSDVEELPG-EIGQLTRLKLLDLSNCMKL------------KVIRPNVISSL 267 (2123)
Q Consensus 203 L~L~~~~l~-~-p~~i~~L~~L~~L~L~~n~l~~lP~-~i~~L~~L~~L~l~~~~~l------------~~lp~~~i~~L 267 (2123)
|.+.-|.+. . .+.+..|++|..|.+.+|.+..++. .+..+..++++.+..|..+ ...|.. ++..
T Consensus 145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie-tsga 223 (498)
T KOG4237|consen 145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE-TSGA 223 (498)
T ss_pred HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhh-cccc
Confidence 999999988 4 3788999999999999999999988 6888889998887766521 111211 2222
Q ss_pred CCCCEEEccCcccccccc---------------c----ccccChhhhCCCCCCCEEEEecCCCCCCChhh--hcccccee
Q 000128 268 SRLEELYMGNSFTEWEIE---------------G----QSNASLVELKQLSRLTTLEVHIPDAQVMPQDL--LSVELERY 326 (2123)
Q Consensus 268 ~~L~~L~l~~n~~~~~~~---------------~----~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~--~~~~L~~l 326 (2123)
+..+-..+.+..+..... + .......-++.|++|++|+++.|.+..+...+ ..+.++.+
T Consensus 224 rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL 303 (498)
T KOG4237|consen 224 RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL 303 (498)
T ss_pred eecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence 222222222211110000 0 01112344778888888888888888776655 34566666
Q ss_pred eeccCC----ccCCCCCcccceeeecccccCccccchhHHHhccCCcEEeccc
Q 000128 327 RICIGD----VWSWSGEHETSRRLKLSALNKCIYLGYGMQMLLKGIEDLYLDE 375 (2123)
Q Consensus 327 ~i~~~~----~~~~~~~~~~L~~L~L~~~~~~~~~p~~i~~~l~~L~~L~L~~ 375 (2123)
.+..+. .-..+..+..|++|+|.+++-..-.|..+ ..+..|..|.+-.
T Consensus 304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF-~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAF-QTLFSLSTLNLLS 355 (498)
T ss_pred hcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccc-cccceeeeeehcc
Confidence 655443 22344566778888887544322223222 2345666666644
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.86 E-value=1.4e-10 Score=137.91 Aligned_cols=186 Identities=23% Similarity=0.293 Sum_probs=159.6
Q ss_pred EEccCCCCccCCCCC---CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcCCCC
Q 000128 133 ISIPFRGIYEFPERL---ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCL 209 (2123)
Q Consensus 133 L~l~~n~~~~lp~~~---~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~~ 209 (2123)
+.|++-.+..+|... .+..-...+++.|++. .+|..+ ..+..|..+.|+.|.+..+|.++++|..|.||+|+.|+
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ 132 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccc-cCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch
Confidence 455555555555433 5556667889999887 788876 78888999999999999999999999999999999999
Q ss_pred CC-CCccccCCCCCcEEEccCCCCcccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCccccccccccc
Q 000128 210 LG-DVATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQS 288 (2123)
Q Consensus 210 l~-~p~~i~~L~~L~~L~L~~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~~~ 288 (2123)
++ .|..++.|. |++|-+++|+++.+|..|+.+..|.+||.+.|. +..+|.. ++.+.+|+.|.+..|.+.
T Consensus 133 lS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn~l~------- 202 (722)
T KOG0532|consen 133 LSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRNHLE------- 202 (722)
T ss_pred hhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhhhhh-------
Confidence 99 788888776 899999999999999999999999999999999 8899998 899999999999998876
Q ss_pred ccChhhhCCCCCCCEEEEecCCCCCCChhh-hccccceeeeccCC
Q 000128 289 NASLVELKQLSRLTTLEVHIPDAQVMPQDL-LSVELERYRICIGD 332 (2123)
Q Consensus 289 ~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~i~~~~ 332 (2123)
..+.++..|+ |..||+++|.+..+|..+ .+..|+.+.+..+.
T Consensus 203 -~lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 203 -DLPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred -hCCHHHhCCc-eeeeecccCceeecchhhhhhhhheeeeeccCC
Confidence 5688888665 888999999999999887 67888888877665
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.73 E-value=4.7e-09 Score=130.35 Aligned_cols=179 Identities=21% Similarity=0.171 Sum_probs=101.7
Q ss_pred CCceEEEccCCCCc-----cCCCCC-CCCCceEEEeecCcCCC------ccchhHhhCCCCccEEEeecCCCC-CCCccc
Q 000128 128 KDPTAISIPFRGIY-----EFPERL-ECPKLKLFVLFSENLSL------RIPDLFFEGMTELRVLSFTGFRFP-SLPSSI 194 (2123)
Q Consensus 128 ~~l~~L~l~~n~~~-----~lp~~~-~~~~Lr~L~l~~n~~~~------~~p~~~~~~l~~Lr~L~L~~n~i~-~lp~~i 194 (2123)
..++.+++.++.+. .++... ..++++.++++++.+.. .++ ..+..+++|+.|++++|.+. ..+..+
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLL-QGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHH-HHHHhcCceeEEEccCCCCChhHHHHH
Confidence 34667777776663 233222 45567777777665541 111 23456777777777777665 233333
Q ss_pred CCCC---CccEEEcCCCCCC-C-----CccccCC-CCCcEEEccCCCCc-----ccccccCCCCCccEEeccCCCCCc--
Q 000128 195 GCLI---SLRTLTLESCLLG-D-----VATIGDL-KKLEILSLRHSDVE-----ELPGEIGQLTRLKLLDLSNCMKLK-- 257 (2123)
Q Consensus 195 ~~L~---~Lr~L~L~~~~l~-~-----p~~i~~L-~~L~~L~L~~n~l~-----~lP~~i~~L~~L~~L~l~~~~~l~-- 257 (2123)
..+. +|++|++++|.+. . ...+..+ .+|+.|++++|.++ .++..+..+.+|++|++++|. ++
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~ 180 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG-IGDA 180 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC-CchH
Confidence 3333 3777777777665 1 1344555 67777777777666 344456666677777777766 33
Q ss_pred ---ccChhhhCCCCCCCEEEccCcccccccccccccChhhhCCCCCCCEEEEecCCCC
Q 000128 258 ---VIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQ 312 (2123)
Q Consensus 258 ---~lp~~~i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 312 (2123)
.++.. +..+++|++|++++|.+... ........+..+++|++|+++.|.+.
T Consensus 181 ~~~~l~~~-l~~~~~L~~L~L~~n~i~~~---~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 181 GIRALAEG-LKANCNLEVLDLNNNGLTDE---GASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHHHH-HHhCCCCCEEeccCCccChH---HHHHHHHHhcccCCCCEEecCCCcCc
Confidence 22222 44556777777777765411 01122334556667777777766554
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.71 E-value=6.5e-09 Score=129.03 Aligned_cols=160 Identities=19% Similarity=0.160 Sum_probs=104.3
Q ss_pred CCCCceEEEeecCcCCCc----cchhHhhCCCCccEEEeecCCCCC-------CCcccCCCCCccEEEcCCCCCC--CCc
Q 000128 148 ECPKLKLFVLFSENLSLR----IPDLFFEGMTELRVLSFTGFRFPS-------LPSSIGCLISLRTLTLESCLLG--DVA 214 (2123)
Q Consensus 148 ~~~~Lr~L~l~~n~~~~~----~p~~~~~~l~~Lr~L~L~~n~i~~-------lp~~i~~L~~Lr~L~L~~~~l~--~p~ 214 (2123)
.+.+|+.+.+.++.+... ++.. +...+.++.++++++.+.. ++..+..+.+|++|++++|.+. .+.
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~-l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASA-LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHH-HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 456688888888876432 2322 3566778888888877653 2345667788888888888876 334
Q ss_pred cccCCCC---CcEEEccCCCCc-----ccccccCCC-CCccEEeccCCCCCc-----ccChhhhCCCCCCCEEEccCccc
Q 000128 215 TIGDLKK---LEILSLRHSDVE-----ELPGEIGQL-TRLKLLDLSNCMKLK-----VIRPNVISSLSRLEELYMGNSFT 280 (2123)
Q Consensus 215 ~i~~L~~---L~~L~L~~n~l~-----~lP~~i~~L-~~L~~L~l~~~~~l~-----~lp~~~i~~L~~L~~L~l~~n~~ 280 (2123)
.+..+.+ |++|++++|++. .+...+..+ ++|+.|++++|. +. .++.. +..+++|++|++++|.+
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~-~~~~~~L~~L~l~~n~l 177 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKA-LRANRDLKELNLANNGI 177 (319)
T ss_pred HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHH-HHhCCCcCEEECcCCCC
Confidence 4444444 888888888776 234456666 788888888887 33 23332 56677888888888877
Q ss_pred ccccccccccChhhhCCCCCCCEEEEecCCCCC
Q 000128 281 EWEIEGQSNASLVELKQLSRLTTLEVHIPDAQV 313 (2123)
Q Consensus 281 ~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 313 (2123)
.+.. .......+...++|+.|+++.|.+..
T Consensus 178 ~~~~---~~~l~~~l~~~~~L~~L~L~~n~i~~ 207 (319)
T cd00116 178 GDAG---IRALAEGLKANCNLEVLDLNNNGLTD 207 (319)
T ss_pred chHH---HHHHHHHHHhCCCCCEEeccCCccCh
Confidence 6211 11223445566788888888776653
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.67 E-value=1.6e-08 Score=109.19 Aligned_cols=128 Identities=23% Similarity=0.323 Sum_probs=40.6
Q ss_pred CCCCccEEEeecCCCCCCCcccC-CCCCccEEEcCCCCCCCCccccCCCCCcEEEccCCCCcccccccC-CCCCccEEec
Q 000128 173 GMTELRVLSFTGFRFPSLPSSIG-CLISLRTLTLESCLLGDVATIGDLKKLEILSLRHSDVEELPGEIG-QLTRLKLLDL 250 (2123)
Q Consensus 173 ~l~~Lr~L~L~~n~i~~lp~~i~-~L~~Lr~L~L~~~~l~~p~~i~~L~~L~~L~L~~n~l~~lP~~i~-~L~~L~~L~l 250 (2123)
+...+|.|+|.+|.|+.+. .++ .+.+|+.|++++|.|+.++.+..+.+|++|++++|+|+.++..+. .+++|++|++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 4445677777777776653 354 466777777777777766666667777777777777776655443 4667777777
Q ss_pred cCCCCCcccCh-hhhCCCCCCCEEEccCcccccccccccccChhhhCCCCCCCEEEE
Q 000128 251 SNCMKLKVIRP-NVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEV 306 (2123)
Q Consensus 251 ~~~~~l~~lp~-~~i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l 306 (2123)
++|+ +..+.. ..++.+++|++|++.+|.+... ......-+..+++|+.||-
T Consensus 96 ~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~----~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 96 SNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEK----KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS----TTHHHHHHHH-TT-SEETT
T ss_pred cCCc-CCChHHhHHHHcCCCcceeeccCCcccch----hhHHHHHHHHcChhheeCC
Confidence 7666 443321 1145566677777776666511 1222333555666666553
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.63 E-value=1.8e-08 Score=108.84 Aligned_cols=107 Identities=31% Similarity=0.442 Sum_probs=25.1
Q ss_pred CCccEEEcCCCCCCCCcccc-CCCCCcEEEccCCCCcccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEcc
Q 000128 198 ISLRTLTLESCLLGDVATIG-DLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMG 276 (2123)
Q Consensus 198 ~~Lr~L~L~~~~l~~p~~i~-~L~~L~~L~L~~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~ 276 (2123)
..+|.|+|++|.|+.++.++ .+.+|++|++++|.|+.++ ++..+++|++|++++|. ++.++.+....+++|++|+++
T Consensus 19 ~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-T
T ss_pred cccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccchHHhCCcCCEEECc
Confidence 34455555555555444444 3455555555555555443 34445555555555555 444443311234555555555
Q ss_pred CcccccccccccccChhhhCCCCCCCEEEEecCCCC
Q 000128 277 NSFTEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQ 312 (2123)
Q Consensus 277 ~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 312 (2123)
+|.+.. -.....++.+++|+.|++.+|.+.
T Consensus 97 ~N~I~~------l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 97 NNKISD------LNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp TS---S------CCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CCcCCC------hHHhHHHHcCCCcceeeccCCccc
Confidence 554431 112344444555555555555443
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.62 E-value=4.5e-09 Score=115.13 Aligned_cols=135 Identities=21% Similarity=0.215 Sum_probs=117.9
Q ss_pred CCCCccEEEeecCCCCCCCcccCCCCCccEEEcCCCCCCCCccccCCCCCcEEEccCCCCcccccccCCCCCccEEeccC
Q 000128 173 GMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLGDVATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSN 252 (2123)
Q Consensus 173 ~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~~l~~p~~i~~L~~L~~L~L~~n~l~~lP~~i~~L~~L~~L~l~~ 252 (2123)
..+.|..+||++|.|+.+..++.-++.+|.|++++|.|.....+..|++|+.|||++|.+.++-..=.+|.|.++|.+++
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 34678999999999999999999999999999999999988889999999999999999988866666888999999999
Q ss_pred CCCCcccChhhhCCCCCCCEEEccCcccccccccccccChhhhCCCCCCCEEEEecCCCCCCCh
Q 000128 253 CMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQVMPQ 316 (2123)
Q Consensus 253 ~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 316 (2123)
|. +..+.. +++|-+|..|++++|++.. -.....+++++.|+.+.+..|.+..++.
T Consensus 362 N~-iE~LSG--L~KLYSLvnLDl~~N~Ie~------ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 362 NK-IETLSG--LRKLYSLVNLDLSSNQIEE------LDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hh-Hhhhhh--hHhhhhheeccccccchhh------HHHhcccccccHHHHHhhcCCCccccch
Confidence 98 777763 8999999999999999862 1236778999999999999999887764
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.47 E-value=1.1e-07 Score=121.33 Aligned_cols=174 Identities=24% Similarity=0.312 Sum_probs=99.8
Q ss_pred CCceEEEccCCCCccCCCCCCCC--CceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEc
Q 000128 128 KDPTAISIPFRGIYEFPERLECP--KLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTL 205 (2123)
Q Consensus 128 ~~l~~L~l~~n~~~~lp~~~~~~--~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L 205 (2123)
+.++.+++.+|.+..++...... +|+.|++++|.+. .+|..+ ..++.|+.|++++|++..+|...+.+..|+.|++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPL-RNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhh-hccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 34566666666666666555332 5666666666554 333222 4566666666666666666665556666666666
Q ss_pred CCCCCC-CCccccCCCCCcEEEccCCCCcccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCccccccc
Q 000128 206 ESCLLG-DVATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEI 284 (2123)
Q Consensus 206 ~~~~l~-~p~~i~~L~~L~~L~L~~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~ 284 (2123)
++|.+. .|..++.+.+|++|.+++|.+.++|..+.++.++..+.+.+|+ +..++.. ++.+++++.|++++|.+.
T Consensus 194 s~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~-~~~l~~l~~L~~s~n~i~--- 268 (394)
T COG4886 194 SGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPES-IGNLSNLETLDLSNNQIS--- 268 (394)
T ss_pred cCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccch-hccccccceecccccccc---
Confidence 666666 4444455555666666666555555566666666666655555 4443333 566666666666666554
Q ss_pred ccccccChhhhCCCCCCCEEEEecCCCCCC
Q 000128 285 EGQSNASLVELKQLSRLTTLEVHIPDAQVM 314 (2123)
Q Consensus 285 ~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 314 (2123)
.+..++.+.+++.|+++.+.+...
T Consensus 269 ------~i~~~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 269 ------SISSLGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ------ccccccccCccCEEeccCcccccc
Confidence 122255666666666666555444
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.46 E-value=2.1e-08 Score=110.06 Aligned_cols=130 Identities=23% Similarity=0.261 Sum_probs=97.4
Q ss_pred CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcCCCCCCCC-ccccCCCCCcEEE
Q 000128 148 ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLGDV-ATIGDLKKLEILS 226 (2123)
Q Consensus 148 ~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~~l~~p-~~i~~L~~L~~L~ 226 (2123)
....|+++++++|.+. .+..+. .-.+.+|+|++++|.|..+-. +..|.+|+.|||++|.++.. ..-.+|.|.++|.
T Consensus 282 TWq~LtelDLS~N~I~-~iDESv-KL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESV-KLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred hHhhhhhccccccchh-hhhhhh-hhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 3556888888888776 455554 567888888888888877654 77788888888888887744 3445777888888
Q ss_pred ccCCCCcccccccCCCCCccEEeccCCCCCcccCh-hhhCCCCCCCEEEccCccccc
Q 000128 227 LRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRP-NVISSLSRLEELYMGNSFTEW 282 (2123)
Q Consensus 227 L~~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~n~~~~ 282 (2123)
|++|.|+.+ .++++|.+|..||+++|+ +..+.. ..||+|+.|+++.+.+|.+.+
T Consensus 359 La~N~iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 359 LAQNKIETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhhHhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCccc
Confidence 888888777 478888888888888887 554432 127888888888888887764
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.32 E-value=3.8e-07 Score=116.53 Aligned_cols=157 Identities=28% Similarity=0.354 Sum_probs=90.0
Q ss_pred CCCCceEEEeecCcCCCccchhHhhCCC-CccEEEeecCCCCCCCcccCCCCCccEEEcCCCCCC-CCccccCCCCCcEE
Q 000128 148 ECPKLKLFVLFSENLSLRIPDLFFEGMT-ELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLG-DVATIGDLKKLEIL 225 (2123)
Q Consensus 148 ~~~~Lr~L~l~~n~~~~~~p~~~~~~l~-~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~~l~-~p~~i~~L~~L~~L 225 (2123)
..+.++.|.+.+|.+. .++... ..++ +|+.|++++|.+..+|..++.+++|+.|++++|.+. .+...+.+.+|+.|
T Consensus 114 ~~~~l~~L~l~~n~i~-~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 114 ELTNLTSLDLDNNNIT-DIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred cccceeEEecCCcccc-cCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 4455666666666655 344332 2332 566666666666666655666666666666666666 33444466666666
Q ss_pred EccCCCCcccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccccccccccccChhhhCCCCCCCEEE
Q 000128 226 SLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLE 305 (2123)
Q Consensus 226 ~L~~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~ 305 (2123)
++++|++..+|..++.+..|+.|.+++|. ...++.. +.++.++..+.+.+|.+. ..+..++.+..++.|+
T Consensus 192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~~--------~~~~~~~~l~~l~~L~ 261 (394)
T COG4886 192 DLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKLE--------DLPESIGNLSNLETLD 261 (394)
T ss_pred eccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCceee--------eccchhccccccceec
Confidence 66666666666655555556666666664 2333333 556666666665555443 1134455666666666
Q ss_pred EecCCCCCCCh
Q 000128 306 VHIPDAQVMPQ 316 (2123)
Q Consensus 306 l~~~~~~~~~~ 316 (2123)
++.|.+..++.
T Consensus 262 ~s~n~i~~i~~ 272 (394)
T COG4886 262 LSNNQISSISS 272 (394)
T ss_pred ccccccccccc
Confidence 66666665544
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=5e-07 Score=105.53 Aligned_cols=187 Identities=21% Similarity=0.179 Sum_probs=127.9
Q ss_pred CCCceEEEccCCCCccCCC--CC-CCCCceEEEeecCcCCCccc-hhHhhCCCCccEEEeecCCCCCCCcc--cCCCCCc
Q 000128 127 HKDPTAISIPFRGIYEFPE--RL-ECPKLKLFVLFSENLSLRIP-DLFFEGMTELRVLSFTGFRFPSLPSS--IGCLISL 200 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp~--~~-~~~~Lr~L~l~~n~~~~~~p-~~~~~~l~~Lr~L~L~~n~i~~lp~~--i~~L~~L 200 (2123)
.+++|.+++.+..+...+. .. .++++|.|+++.|-+....+ ..+...+++|+.|+++.|.+...-++ -..+.+|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 5678889998887775552 23 78999999999987653222 34557899999999999987643222 1367889
Q ss_pred cEEEcCCCCCC--CC-ccccCCCCCcEEEccCCC-CcccccccCCCCCccEEeccCCCCCcccCh-hhhCCCCCCCEEEc
Q 000128 201 RTLTLESCLLG--DV-ATIGDLKKLEILSLRHSD-VEELPGEIGQLTRLKLLDLSNCMKLKVIRP-NVISSLSRLEELYM 275 (2123)
Q Consensus 201 r~L~L~~~~l~--~p-~~i~~L~~L~~L~L~~n~-l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l 275 (2123)
+.|.++.|.++ .. ......++|+.|+|.+|. +..--.....++.|+.|||++|. +-.++. ..++.++.|..|++
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhhhc
Confidence 99999999988 33 445667889999999883 33222334456788999999988 444441 12678888888888
Q ss_pred cCcccccccccccccChhhhCCCCCCCEEEEecCCCCCCC
Q 000128 276 GNSFTEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQVMP 315 (2123)
Q Consensus 276 ~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 315 (2123)
+.+.+.... .-......-....++|++|.+..|++...+
T Consensus 279 s~tgi~si~-~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~ 317 (505)
T KOG3207|consen 279 SSTGIASIA-EPDVESLDKTHTFPKLEYLNISENNIRDWR 317 (505)
T ss_pred cccCcchhc-CCCccchhhhcccccceeeecccCcccccc
Confidence 887765110 111112223456678899999888876554
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=4.8e-07 Score=105.70 Aligned_cols=179 Identities=20% Similarity=0.186 Sum_probs=132.2
Q ss_pred CCCceEEEccCCCCccCCCCC----CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCC--CCCcccCCCCCc
Q 000128 127 HKDPTAISIPFRGIYEFPERL----ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFP--SLPSSIGCLISL 200 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp~~~----~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~--~lp~~i~~L~~L 200 (2123)
+.++|.|+++.|-+..+-... .+|+|+.|+++.|.+........-..+++|+.|.++.|.++ .+-.....+++|
T Consensus 145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl 224 (505)
T KOG3207|consen 145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSL 224 (505)
T ss_pred CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcH
Confidence 679999999999776443322 79999999999998753332222236889999999999988 333445577899
Q ss_pred cEEEcCCCC-CC-CCccccCCCCCcEEEccCCCCcccc--cccCCCCCccEEeccCCCCCccc--Chh----hhCCCCCC
Q 000128 201 RTLTLESCL-LG-DVATIGDLKKLEILSLRHSDVEELP--GEIGQLTRLKLLDLSNCMKLKVI--RPN----VISSLSRL 270 (2123)
Q Consensus 201 r~L~L~~~~-l~-~p~~i~~L~~L~~L~L~~n~l~~lP--~~i~~L~~L~~L~l~~~~~l~~l--p~~----~i~~L~~L 270 (2123)
..|+|.+|. +. .-.+..-++.|+.|||++|.+-..+ .-++.++.|+.|+++.|. +.++ |+. ....+.+|
T Consensus 225 ~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL 303 (505)
T KOG3207|consen 225 EVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKL 303 (505)
T ss_pred HHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcCCCccchhhhcccccc
Confidence 999999996 22 2345566889999999999888777 458899999999999887 5543 221 12467899
Q ss_pred CEEEccCcccccccccccccChhhhCCCCCCCEEEEecCCCC
Q 000128 271 EELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQ 312 (2123)
Q Consensus 271 ~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 312 (2123)
+.|++..|.+.. .....++..+.+|+.|.+..|.+.
T Consensus 304 ~~L~i~~N~I~~------w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 304 EYLNISENNIRD------WRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred eeeecccCcccc------ccccchhhccchhhhhhccccccc
Confidence 999999998851 234566777777887777666553
No 37
>PLN03150 hypothetical protein; Provisional
Probab=98.02 E-value=9.1e-06 Score=108.36 Aligned_cols=105 Identities=19% Similarity=0.306 Sum_probs=91.6
Q ss_pred CccEEEeecCCCC-CCCcccCCCCCccEEEcCCCCCC--CCccccCCCCCcEEEccCCCCc-ccccccCCCCCccEEecc
Q 000128 176 ELRVLSFTGFRFP-SLPSSIGCLISLRTLTLESCLLG--DVATIGDLKKLEILSLRHSDVE-ELPGEIGQLTRLKLLDLS 251 (2123)
Q Consensus 176 ~Lr~L~L~~n~i~-~lp~~i~~L~~Lr~L~L~~~~l~--~p~~i~~L~~L~~L~L~~n~l~-~lP~~i~~L~~L~~L~l~ 251 (2123)
.++.|+|++|.+. .+|..++.+++|++|+|++|.+. .|..++.+.+|++|++++|++. .+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999998 78999999999999999999987 5678999999999999999988 789999999999999999
Q ss_pred CCCCCcccChhhhCC-CCCCCEEEccCcccc
Q 000128 252 NCMKLKVIRPNVISS-LSRLEELYMGNSFTE 281 (2123)
Q Consensus 252 ~~~~l~~lp~~~i~~-L~~L~~L~l~~n~~~ 281 (2123)
+|...+.+|.. ++. ..++..+++.+|...
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCccc
Confidence 99977788887 554 457788888887643
No 38
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.00 E-value=1.3e-05 Score=96.92 Aligned_cols=162 Identities=14% Similarity=0.242 Sum_probs=97.6
Q ss_pred cCCccEEEEecccCccccCchhHHHhhccccccccccccccEEEeeccccCCCCcccccccCCcCCCCccccccccceec
Q 000128 1777 FYNLKFLGVQKCNKLLNIFPCNMLERLQKLQKLQVLYCSSVREIFELRALSGRDTHTIKAAPLRESDASFVFPQLTSLSL 1856 (2123)
Q Consensus 1777 ~~~L~~L~i~~C~~L~~~~p~~~~~~l~~L~~L~i~~C~~l~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 1856 (2123)
+.+++.|+|++| .++ .+|. -..+|++|.+++|.+++.++. .+ .++|++|.+
T Consensus 51 ~~~l~~L~Is~c-~L~-sLP~----LP~sLtsL~Lsnc~nLtsLP~--~L---------------------P~nLe~L~L 101 (426)
T PRK15386 51 ARASGRLYIKDC-DIE-SLPV----LPNELTEITIENCNNLTTLPG--SI---------------------PEGLEKLTV 101 (426)
T ss_pred hcCCCEEEeCCC-CCc-ccCC----CCCCCcEEEccCCCCcccCCc--hh---------------------hhhhhheEc
Confidence 466778888888 554 4451 223588888888887765553 11 257888888
Q ss_pred ccccCcCcccCccccCCCCCccEEEecC--CCceeeccccccccccccccCccccccceeEeeeccccCCCccEEEcccc
Q 000128 1857 WWLPRLKSFYPQVQISEWPMLKKLDVGG--CAEVEIFASEVLSLQETHVDSQHNIQIPQYLFFVDKVAFPSLEELMLFRL 1934 (2123)
Q Consensus 1857 ~~c~~L~~~~~~~~~~~l~~L~~L~l~~--C~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~~ 1934 (2123)
++|++++.+| ++|+.|++.+ |..+..+| ++|++|.+.+.
T Consensus 102 s~Cs~L~sLP--------~sLe~L~L~~n~~~~L~~LP-------------------------------ssLk~L~I~~~ 142 (426)
T PRK15386 102 CHCPEISGLP--------ESVRSLEIKGSATDSIKNVP-------------------------------NGLTSLSINSY 142 (426)
T ss_pred cCcccccccc--------cccceEEeCCCCCcccccCc-------------------------------chHhheecccc
Confidence 8887776654 3577777653 33344333 25777777543
Q ss_pred cCcccccccCCCCCCCCCCcceeeeccCCCccccCCCCcCCCCccEEEEcCCCCC-ccCcccchhcccccccEEEEcccc
Q 000128 1935 PKLLHLWKGNSHPSKVFPNLASLKLSECTKLEKLVPSSMSFQNLTTLEVSKCDGL-INLVTCSTAESMVKLVRMSITDCK 2013 (2123)
Q Consensus 1935 ~~l~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~l~~L~~L~i~~C~~L-~~l~~~~~~~sl~~L~~L~i~~C~ 2013 (2123)
......+. +....++|++|.+.+|..+. +|..+. .+|+.|.+..+... ..++..++|.+ + .|++.+|-
T Consensus 143 n~~~~~~l----p~~LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~n---l-~L~f~n~l 211 (426)
T PRK15386 143 NPENQARI----DNLISPSLKTLSLTGCSNII-LPEKLP--ESLQSITLHIEQKTTWNISFEGFPDG---L-DIDLQNSV 211 (426)
T ss_pred cccccccc----ccccCCcccEEEecCCCccc-Cccccc--ccCcEEEecccccccccCcccccccc---c-Eechhhhc
Confidence 32111110 11344789999999988653 444332 58888988765321 12344566666 5 78888885
Q ss_pred cchh
Q 000128 2014 LIEE 2017 (2123)
Q Consensus 2014 ~l~~ 2017 (2123)
.+..
T Consensus 212 kL~~ 215 (426)
T PRK15386 212 LLSP 215 (426)
T ss_pred ccCH
Confidence 5443
No 39
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.97 E-value=2e-05 Score=95.31 Aligned_cols=167 Identities=16% Similarity=0.189 Sum_probs=106.2
Q ss_pred ccccccceecccccCcCcccCccccCCCCCccEEEecCCCceeeccccccccccccccCccccccceeEeeeccccCCCc
Q 000128 1847 VFPQLTSLSLWWLPRLKSFYPQVQISEWPMLKKLDVGGCAEVEIFASEVLSLQETHVDSQHNIQIPQYLFFVDKVAFPSL 1926 (2123)
Q Consensus 1847 ~l~~L~~L~l~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~L 1926 (2123)
.+++++.|++++| +|+++|. --++|+.|.+++|..++.+|... .++|
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~-----LP~sLtsL~Lsnc~nLtsLP~~L---------------------------P~nL 96 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPV-----LPNELTEITIENCNNLTTLPGSI---------------------------PEGL 96 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCC-----CCCCCcEEEccCCCCcccCCchh---------------------------hhhh
Confidence 3688999999999 7888862 12479999999999998777321 1379
Q ss_pred cEEEcccccCcccccccCCCCCCCCCCcceeeecc--CCCccccCCCCcCCCCccEEEEcCCCCC--ccCcccchhcccc
Q 000128 1927 EELMLFRLPKLLHLWKGNSHPSKVFPNLASLKLSE--CTKLEKLVPSSMSFQNLTTLEVSKCDGL--INLVTCSTAESMV 2002 (2123)
Q Consensus 1927 ~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~--C~~L~~l~~~~~~l~~L~~L~i~~C~~L--~~l~~~~~~~sl~ 2002 (2123)
++|.+++|..++.++ .+|++|++.+ |..+.++|+ +|+.|.+.++... ..++ ..+|.+
T Consensus 97 e~L~Ls~Cs~L~sLP----------~sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp-~~LPsS-- 157 (426)
T PRK15386 97 EKLTVCHCPEISGLP----------ESVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARID-NLISPS-- 157 (426)
T ss_pred hheEccCcccccccc----------cccceEEeCCCCCcccccCcc------hHhheeccccccccccccc-cccCCc--
Confidence 999999998887665 3577777653 445666666 5667777543322 1112 235566
Q ss_pred cccEEEEcccccchhhhccCcccccccccccccceeccccCCCCceeccCCeeeecCCccEEEeccCccccc--ccCCC
Q 000128 2003 KLVRMSITDCKLIEEIIHPIREDVKDCIVFSQLKYLGLHCLPTLTSFCLGNYTLEFPSLEQVIVMDCLKMMT--FSQGA 2079 (2123)
Q Consensus 2003 ~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~l~~L~~~~~~~~~~~~~~L~~~~i~~C~~~~~--~~~~~ 2079 (2123)
|++|+|.+|..+. .+ .....+|++|.+.... .+++....+.+. +++ .+.+.+|-++.. |+.+.
T Consensus 158 -Lk~L~Is~c~~i~-LP---------~~LP~SLk~L~ls~n~-~~sLeI~~~sLP-~nl-~L~f~n~lkL~~~~f~d~~ 222 (426)
T PRK15386 158 -LKTLSLTGCSNII-LP---------EKLPESLQSITLHIEQ-KTTWNISFEGFP-DGL-DIDLQNSVLLSPDVFKDKN 222 (426)
T ss_pred -ccEEEecCCCccc-Cc---------ccccccCcEEEecccc-cccccCcccccc-ccc-EechhhhcccCHHHhhccc
Confidence 9999999998552 11 1124688888887643 122111111121 456 888888866533 55443
No 40
>PLN03150 hypothetical protein; Provisional
Probab=97.92 E-value=1.5e-05 Score=106.16 Aligned_cols=104 Identities=19% Similarity=0.227 Sum_probs=89.7
Q ss_pred CccEEEcCCCCCC--CCccccCCCCCcEEEccCCCCc-ccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEc
Q 000128 199 SLRTLTLESCLLG--DVATIGDLKKLEILSLRHSDVE-ELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYM 275 (2123)
Q Consensus 199 ~Lr~L~L~~~~l~--~p~~i~~L~~L~~L~L~~n~l~-~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l 275 (2123)
.++.|+|++|.+. .|..++.+.+|++|+|++|.+. .+|..++.+++|+.|++++|...+.+|.. ++++++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 4889999999988 6789999999999999999998 89999999999999999999966678876 999999999999
Q ss_pred cCcccccccccccccChhhhCCC-CCCCEEEEecCC
Q 000128 276 GNSFTEWEIEGQSNASLVELKQL-SRLTTLEVHIPD 310 (2123)
Q Consensus 276 ~~n~~~~~~~~~~~~~~~~l~~L-~~L~~L~l~~~~ 310 (2123)
++|.+.+.+ +..++.+ .++..+++..|.
T Consensus 498 s~N~l~g~i-------P~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 498 NGNSLSGRV-------PAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCcccccC-------ChHHhhccccCceEEecCCc
Confidence 999988554 5555553 466778888775
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.90 E-value=9.7e-06 Score=72.05 Aligned_cols=58 Identities=36% Similarity=0.515 Sum_probs=37.8
Q ss_pred CCcEEEccCCCCccccc-ccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcc
Q 000128 221 KLEILSLRHSDVEELPG-EIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSF 279 (2123)
Q Consensus 221 ~L~~L~L~~n~l~~lP~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~ 279 (2123)
+|++|++++|+++.+|. .+..+++|++|++++|. +..++++.|.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 56666666666666664 45666666666666666 666666666666666666666664
No 42
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.84 E-value=1.3e-06 Score=115.74 Aligned_cols=255 Identities=23% Similarity=0.219 Sum_probs=136.9
Q ss_pred cCchhhhhhcccccchhhccccccccccCCccEEEEecc-cCccccC--chhHHHhhccccccccccccccEEEeecccc
Q 000128 1750 LPSLEELAILSMDSLRKLWQDELSLHSFYNLKFLGVQKC-NKLLNIF--PCNMLERLQKLQKLQVLYCSSVREIFELRAL 1826 (2123)
Q Consensus 1750 ~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~L~~L~i~~C-~~L~~~~--p~~~~~~l~~L~~L~i~~C~~l~~i~~~~~l 1826 (2123)
.++|+.+.+.+|..+...+... ....++.|++|++++| ....... ...+...+.+|+.|++.+|..++++... .+
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~-~l 264 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDA-LALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS-AL 264 (482)
T ss_pred CchhhHhhhcccccCChhhHHH-HHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH-HH
Confidence 6788888888887766532111 1466788888888873 3332111 1234566678888888888775544321 11
Q ss_pred CCCCcccccccCCcCCCCccccccccceecccccCcCcccCccccCCCCCccEEEecCCCceeeccccccccccccccCc
Q 000128 1827 SGRDTHTIKAAPLRESDASFVFPQLTSLSLWWLPRLKSFYPQVQISEWPMLKKLDVGGCAEVEIFASEVLSLQETHVDSQ 1906 (2123)
Q Consensus 1827 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~~ 1906 (2123)
.. .+|+|+.|.+.+|..+++.........|++|++|++++|..+.....
T Consensus 265 ~~------------------~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l------------- 313 (482)
T KOG1947|consen 265 AS------------------RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGL------------- 313 (482)
T ss_pred Hh------------------hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHH-------------
Confidence 11 16788888888888887777777777788888888888877632110
Q ss_pred cccccceeEeeeccccCCCccEEEcccccCcccccccCCCCCCCCCCcceeeeccCCCccccCCCCcCCCCccEEEEcCC
Q 000128 1907 HNIQIPQYLFFVDKVAFPSLEELMLFRLPKLLHLWKGNSHPSKVFPNLASLKLSECTKLEKLVPSSMSFQNLTTLEVSKC 1986 (2123)
Q Consensus 1907 ~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~l~~L~~L~i~~C 1986 (2123)
..+. ...|+|++|.+..+.. ...++.+.+.+|..... ..+..+.+.+|
T Consensus 314 ---------~~~~-~~c~~l~~l~~~~~~~--------------c~~l~~~~l~~~~~~~~--------d~~~~~~~~~~ 361 (482)
T KOG1947|consen 314 ---------EALL-KNCPNLRELKLLSLNG--------------CPSLTDLSLSGLLTLTS--------DDLAELILRSC 361 (482)
T ss_pred ---------HHHH-HhCcchhhhhhhhcCC--------------CccHHHHHHHHhhccCc--------hhHhHHHHhcC
Confidence 0000 0023333333322221 12222222222221110 13444444444
Q ss_pred CCCccCcccchhcccccccEEEEcccccc-hhhhccCcccccccccccccceeccccCCCCceeccCCeeeecCCccEEE
Q 000128 1987 DGLINLVTCSTAESMVKLVRMSITDCKLI-EEIIHPIREDVKDCIVFSQLKYLGLHCLPTLTSFCLGNYTLEFPSLEQVI 2065 (2123)
Q Consensus 1987 ~~L~~l~~~~~~~sl~~L~~L~i~~C~~l-~~~~~~~~~~~~~~~~~~~L~~L~l~~l~~L~~~~~~~~~~~~~~L~~~~ 2065 (2123)
++++++--...+.+ .....+...+|+.+ ..+.... ..+.+++.|.+..|...+.-........+..++.++
T Consensus 362 ~~l~~~~l~~~~~~-~~~~~~~l~gc~~l~~~l~~~~-------~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~ 433 (482)
T KOG1947|consen 362 PKLTDLSLSYCGIS-DLGLELSLRGCPNLTESLELRL-------CRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLD 433 (482)
T ss_pred CCcchhhhhhhhcc-CcchHHHhcCCcccchHHHHHh-------ccCCccceEecccCccccccchHHHhhhhhccccCC
Confidence 44444433333311 11114556677766 2222111 123337777777777776655433112267788888
Q ss_pred eccCcccccccC
Q 000128 2066 VMDCLKMMTFSQ 2077 (2123)
Q Consensus 2066 i~~C~~~~~~~~ 2077 (2123)
+.+|+.+..-+-
T Consensus 434 ~~~~~~~~~~~~ 445 (482)
T KOG1947|consen 434 LSGCRVITLKSL 445 (482)
T ss_pred ccCcccccchhh
Confidence 888888877443
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.83 E-value=1.2e-05 Score=71.50 Aligned_cols=58 Identities=26% Similarity=0.389 Sum_probs=30.7
Q ss_pred CceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCC-cccCCCCCccEEEcCCCC
Q 000128 151 KLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLP-SSIGCLISLRTLTLESCL 209 (2123)
Q Consensus 151 ~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp-~~i~~L~~Lr~L~L~~~~ 209 (2123)
+|++|++++|++. .+|.+.|.++++|++|++++|.++.+| ..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4555555555544 445445555555555555555555443 344555555555555554
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=2.3e-06 Score=94.75 Aligned_cols=119 Identities=16% Similarity=0.174 Sum_probs=77.4
Q ss_pred hhcccccEEEeccccccccccCcccccccccEEeeccCCCcccccchhhHHHhhhcceeEEcccccchhhhccccccccc
Q 000128 883 KALLNLATLEISECDKLEKLVPSSVSLENLVTLEVSKCNELIHLMTLSTAESLVKLNRMNVIDCKMLQQIILQVGEEVKK 962 (2123)
Q Consensus 883 ~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~e~~~ 962 (2123)
..|+.|+.|.+.+..--..+...++.-.+|+.|++++|.+++.-...-+..++..|.+|+++-|....+.+...-.
T Consensus 207 s~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~---- 282 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVA---- 282 (419)
T ss_pred HHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHh----
Confidence 3466666666666443333444466778899999999999998887778899999999999999766555433211
Q ss_pred ceeeeccccEEecccCCC-ccccccCCcceecCcccEEEeccCCcc
Q 000128 963 DCIVFGQFKYLGLHCLPC-LTSFCLGNFTLEFPCLEQVIVRECPKM 1007 (2123)
Q Consensus 963 ~~~~~~~L~~L~l~~~~~-L~~~~~~~~~~~~~sL~~L~l~~C~~l 1007 (2123)
-.-++|+.|+++++.+ +..-.......+||.|.+||+++|-.+
T Consensus 283 --hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l 326 (419)
T KOG2120|consen 283 --HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVML 326 (419)
T ss_pred --hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccccc
Confidence 1234677777777642 111112222356677777777776444
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.77 E-value=3.5e-07 Score=112.12 Aligned_cols=180 Identities=20% Similarity=0.145 Sum_probs=125.2
Q ss_pred ccCCCCceEEEccCCCCccCCCCCC-CCCceEEEeecCc---------CCCccchhHhhCCCCccEEEeecCCCCCCCcc
Q 000128 124 KKTHKDPTAISIPFRGIYEFPERLE-CPKLKLFVLFSEN---------LSLRIPDLFFEGMTELRVLSFTGFRFPSLPSS 193 (2123)
Q Consensus 124 ~~~~~~l~~L~l~~n~~~~lp~~~~-~~~Lr~L~l~~n~---------~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~ 193 (2123)
-+|+..+|+|-+.++++........ -..|+.|..++.- -.+.+..++ ....|.+.+.++|.+..+-.+
T Consensus 105 ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~L~~mD~S 182 (1096)
T KOG1859|consen 105 IFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP--VWNKLATASFSYNRLVLMDES 182 (1096)
T ss_pred eccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch--hhhhHhhhhcchhhHHhHHHH
Confidence 3447788888888887765332211 1234444443210 001122211 234678888889988888888
Q ss_pred cCCCCCccEEEcCCCCCCCCccccCCCCCcEEEccCCCCcccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEE
Q 000128 194 IGCLISLRTLTLESCLLGDVATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEEL 273 (2123)
Q Consensus 194 i~~L~~Lr~L~L~~~~l~~p~~i~~L~~L~~L~L~~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L 273 (2123)
+.-+++|+.|+|++|+++..+.+..+.+|++|||++|.+..+|.-=..=.+|+.|.+++|. ++.+.. +.+|.+|+.|
T Consensus 183 Lqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~-l~tL~g--ie~LksL~~L 259 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNA-LTTLRG--IENLKSLYGL 259 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeeeecccH-HHhhhh--HHhhhhhhcc
Confidence 8888999999999999987778889999999999999998887532112359999999988 777764 8899999999
Q ss_pred EccCcccccccccccccChhhhCCCCCCCEEEEecCCCCCC
Q 000128 274 YMGNSFTEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQVM 314 (2123)
Q Consensus 274 ~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 314 (2123)
|++.|-+.+ ......+..|..|+.|.+.+|.+---
T Consensus 260 DlsyNll~~------hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 260 DLSYNLLSE------HSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred chhHhhhhc------chhhhHHHHHHHHHHHhhcCCccccC
Confidence 999887762 22345566677788888888876433
No 46
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.70 E-value=2.1e-06 Score=113.63 Aligned_cols=199 Identities=22% Similarity=0.251 Sum_probs=114.0
Q ss_pred cccCCccEEEEecccCccccCchhHHHhhccccccccccccccEEEeeccccCCCCcccccccCCcCCCCccccccccce
Q 000128 1775 HSFYNLKFLGVQKCNKLLNIFPCNMLERLQKLQKLQVLYCSSVREIFELRALSGRDTHTIKAAPLRESDASFVFPQLTSL 1854 (2123)
Q Consensus 1775 ~~~~~L~~L~i~~C~~L~~~~p~~~~~~l~~L~~L~i~~C~~l~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L 1854 (2123)
..+++|+.|+++.|..+.+..-..+...+++|++|.+.+|..+++-. +.. -...+|+|++|
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~g----l~~---------------i~~~~~~L~~L 300 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEG----LVS---------------IAERCPSLREL 300 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhH----HHH---------------HHHhcCcccEE
Confidence 34567777777777766655555555567777777777777643321 110 00125777777
Q ss_pred ecccccCcCcccCccccCCCCCccEEEecCC---CceeeccccccccccccccCccccccceeEeeeccccCC-CccEEE
Q 000128 1855 SLWWLPRLKSFYPQVQISEWPMLKKLDVGGC---AEVEIFASEVLSLQETHVDSQHNIQIPQYLFFVDKVAFP-SLEELM 1930 (2123)
Q Consensus 1855 ~l~~c~~L~~~~~~~~~~~l~~L~~L~l~~C---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~-~L~~L~ 1930 (2123)
++++|..+++.........|++|+.|.+..+ +.++.+....... . -+ .+..+.
T Consensus 301 ~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~------~-----------------~~d~~~~~~ 357 (482)
T KOG1947|consen 301 DLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLT------L-----------------TSDDLAELI 357 (482)
T ss_pred eeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhc------c-----------------CchhHhHHH
Confidence 7777777765543333445666666554443 3444332110000 0 00 355666
Q ss_pred cccccCcccccccCCCCCCCCCCcc-eeeeccCCCc-cccCCCCcCCCCccEEEEcCCCCCccCcccchhcccccccEEE
Q 000128 1931 LFRLPKLLHLWKGNSHPSKVFPNLA-SLKLSECTKL-EKLVPSSMSFQNLTTLEVSKCDGLINLVTCSTAESMVKLVRMS 2008 (2123)
Q Consensus 1931 L~~~~~l~~~~~~~~~~~~~l~~L~-~L~l~~C~~L-~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~sl~~L~~L~ 2008 (2123)
+.+|++++++.... .. ..... .+.+.+|+.+ .++......+.+++.|.+..|...+.-.-...+.++..++.++
T Consensus 358 ~~~~~~l~~~~l~~---~~-~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~ 433 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSY---CG-ISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLD 433 (482)
T ss_pred HhcCCCcchhhhhh---hh-ccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCC
Confidence 66667666665431 12 22223 5777788887 5555444455558888888888777655544444466677777
Q ss_pred Ecccccchhhh
Q 000128 2009 ITDCKLIEEII 2019 (2123)
Q Consensus 2009 i~~C~~l~~~~ 2019 (2123)
+.+|+.+....
T Consensus 434 ~~~~~~~~~~~ 444 (482)
T KOG1947|consen 434 LSGCRVITLKS 444 (482)
T ss_pred ccCcccccchh
Confidence 78777665544
No 47
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.65 E-value=1.2e-05 Score=92.17 Aligned_cols=113 Identities=16% Similarity=0.148 Sum_probs=67.9
Q ss_pred CCCCccEEEcCCCCCC--CC----ccccCCCCCcEEEccCCCCcccc--------------cccCCCCCccEEeccCCCC
Q 000128 196 CLISLRTLTLESCLLG--DV----ATIGDLKKLEILSLRHSDVEELP--------------GEIGQLTRLKLLDLSNCMK 255 (2123)
Q Consensus 196 ~L~~Lr~L~L~~~~l~--~p----~~i~~L~~L~~L~L~~n~l~~lP--------------~~i~~L~~L~~L~l~~~~~ 255 (2123)
..++|++|+||.|.+. .+ .-+...+.|++|.|.+|.+...- .-++.-++||++..++|+
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr- 168 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR- 168 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-
Confidence 3446666666666655 22 23445666777777776655211 123445678888877777
Q ss_pred CcccChh----hhCCCCCCCEEEccCcccccccccccccChhhhCCCCCCCEEEEecCCCC
Q 000128 256 LKVIRPN----VISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQ 312 (2123)
Q Consensus 256 l~~lp~~----~i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 312 (2123)
+..-+.. ++...+.|+++.+..|.|. +.........+..+++|+.|++..|-++
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~---~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIR---PEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEeccccc---CchhHHHHHHHHhCCcceeeecccchhh
Confidence 5444331 2555677888888777765 1112344566777888888888777654
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.60 E-value=6.6e-06 Score=105.07 Aligned_cols=104 Identities=23% Similarity=0.447 Sum_probs=57.6
Q ss_pred CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcCCCCCCCCccccCCCCCcEEEc
Q 000128 148 ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLGDVATIGDLKKLEILSL 227 (2123)
Q Consensus 148 ~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~~l~~p~~i~~L~~L~~L~L 227 (2123)
.+.+|+.+++..|.+. .+... +..+++|++|++++|.|+.+. .+..+..|+.|++++|.|..+..+..+..|+.+++
T Consensus 93 ~~~~l~~l~l~~n~i~-~i~~~-l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIE-KIENL-LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISGLESLKSLKLLDL 169 (414)
T ss_pred cccceeeeeccccchh-hcccc-hhhhhcchheecccccccccc-chhhccchhhheeccCcchhccCCccchhhhcccC
Confidence 4555566666655554 22211 244566666666666666553 24555556666666666665555555666666666
Q ss_pred cCCCCcccccc-cCCCCCccEEeccCCC
Q 000128 228 RHSDVEELPGE-IGQLTRLKLLDLSNCM 254 (2123)
Q Consensus 228 ~~n~l~~lP~~-i~~L~~L~~L~l~~~~ 254 (2123)
++|.+..++.. ...+.+++.+++.+|.
T Consensus 170 ~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 170 SYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred CcchhhhhhhhhhhhccchHHHhccCCc
Confidence 66666555433 3555566666665555
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=5.2e-06 Score=92.08 Aligned_cols=110 Identities=15% Similarity=0.158 Sum_probs=67.6
Q ss_pred cccEEeeccCCCcccccchhhHHHhhhcceeEEcccccchhhhcccccccccceeeeccccEEecccCCCccccccCCcc
Q 000128 911 NLVTLEVSKCNELIHLMTLSTAESLVKLNRMNVIDCKMLQQIILQVGEEVKKDCIVFGQFKYLGLHCLPCLTSFCLGNFT 990 (2123)
Q Consensus 911 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~e~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~ 990 (2123)
.|+.||+++-. |+.-.-..+...+.+|+.|.+.|...-+.++..... -..|+.++++.+..++.+...-..
T Consensus 186 Rlq~lDLS~s~-it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk--------N~~L~~lnlsm~sG~t~n~~~ll~ 256 (419)
T KOG2120|consen 186 RLQHLDLSNSV-ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK--------NSNLVRLNLSMCSGFTENALQLLL 256 (419)
T ss_pred hhHHhhcchhh-eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc--------cccceeeccccccccchhHHHHHH
Confidence 35555555432 332222344566777777777776554444444332 456888888888888888776666
Q ss_pred eecCcccEEEeccCCccee-cccCCcC-CcCceEEEecccc
Q 000128 991 LEFPCLEQVIVRECPKMKI-FSQGVLH-TPKLQRLHLREKY 1029 (2123)
Q Consensus 991 ~~~~sL~~L~l~~C~~l~~-~~~~~~~-~~~L~~l~~~~~~ 1029 (2123)
.+|+.|.+|+++.|.--+. +...+.+ -++|.+|.++++.
T Consensus 257 ~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~r 297 (419)
T KOG2120|consen 257 SSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYR 297 (419)
T ss_pred HhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhH
Confidence 7889999999999965443 2222333 4667777776543
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.56 E-value=9.4e-06 Score=103.65 Aligned_cols=128 Identities=23% Similarity=0.311 Sum_probs=97.4
Q ss_pred CCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcCCCCCCCCccccCCCCCcEEEcc
Q 000128 149 CPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLGDVATIGDLKKLEILSLR 228 (2123)
Q Consensus 149 ~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~~l~~p~~i~~L~~L~~L~L~ 228 (2123)
+..+..+.+..|.+.. +-.. ...+++|.+|++.+|.|..+...+..+.+|++|++++|.|+.+..+..+..|+.|+++
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~-l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNH-LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLS 148 (414)
T ss_pred hHhHHhhccchhhhhh-hhcc-cccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheec
Confidence 4455555566665542 1121 3678889999999999888776678889999999999998888888888889999999
Q ss_pred CCCCcccccccCCCCCccEEeccCCCCCcccCh-hhhCCCCCCCEEEccCcccc
Q 000128 229 HSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRP-NVISSLSRLEELYMGNSFTE 281 (2123)
Q Consensus 229 ~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~n~~~ 281 (2123)
+|.|..++ ++..+++|+.+++++|. +..+.. . ...+.+++.+++.+|.+.
T Consensus 149 ~N~i~~~~-~~~~l~~L~~l~l~~n~-i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 149 GNLISDIS-GLESLKSLKLLDLSYNR-IVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred cCcchhcc-CCccchhhhcccCCcch-hhhhhhhh-hhhccchHHHhccCCchh
Confidence 99888774 56668889999999888 666665 2 367888888888888765
No 51
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.44 E-value=1.7e-05 Score=90.93 Aligned_cols=181 Identities=16% Similarity=0.161 Sum_probs=121.9
Q ss_pred CCceEEEccCCCCc--cCCCC---C-CCCCceEEEeecCcCCCc---c-ch--------hHhhCCCCccEEEeecCCCCC
Q 000128 128 KDPTAISIPFRGIY--EFPER---L-ECPKLKLFVLFSENLSLR---I-PD--------LFFEGMTELRVLSFTGFRFPS 189 (2123)
Q Consensus 128 ~~l~~L~l~~n~~~--~lp~~---~-~~~~Lr~L~l~~n~~~~~---~-p~--------~~~~~l~~Lr~L~L~~n~i~~ 189 (2123)
++++.++|++|.+. .++.. + .+..|+.|.+.+|.+... . .. .-...-+.|||++..+|++..
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 37888999988776 22221 1 678888888888865411 1 00 112356778999999988764
Q ss_pred CC-----cccCCCCCccEEEcCCCCCCCC------ccccCCCCCcEEEccCCCCc-----ccccccCCCCCccEEeccCC
Q 000128 190 LP-----SSIGCLISLRTLTLESCLLGDV------ATIGDLKKLEILSLRHSDVE-----ELPGEIGQLTRLKLLDLSNC 253 (2123)
Q Consensus 190 lp-----~~i~~L~~Lr~L~L~~~~l~~p------~~i~~L~~L~~L~L~~n~l~-----~lP~~i~~L~~L~~L~l~~~ 253 (2123)
-+ ..+...+.|+.+.+..|.|... ..+...++|++||+.+|-++ .+...+..+++|+.|++++|
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 33 3566678888889988887621 56778889999999998766 34455667778999998888
Q ss_pred CCCcc-----cChhhhCCCCCCCEEEccCcccccccccccccChhhhCCCCCCCEEEEecCCCC
Q 000128 254 MKLKV-----IRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQ 312 (2123)
Q Consensus 254 ~~l~~-----lp~~~i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 312 (2123)
. ++. +-...-...++|++|.+.+|.++.+. .......+...+.|+.|+++.|+++
T Consensus 252 l-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da---~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 252 L-LENEGAIAFVDALKESAPSLEVLELAGNEITRDA---ALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred c-cccccHHHHHHHHhccCCCCceeccCcchhHHHH---HHHHHHHHhcchhhHHhcCCccccc
Confidence 6 332 11221234678999999988887321 1222334556788888889888874
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.37 E-value=8.9e-05 Score=98.14 Aligned_cols=126 Identities=21% Similarity=0.314 Sum_probs=82.3
Q ss_pred CCceEEEccCCCCc--cCCCCC--CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEE
Q 000128 128 KDPTAISIPFRGIY--EFPERL--ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTL 203 (2123)
Q Consensus 128 ~~l~~L~l~~n~~~--~lp~~~--~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L 203 (2123)
.++++|++++...- ..+..+ -+|.|++|.+.+-.+...--..++.++++|+.||+++++++.+ .++++|++|++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 46788888774332 222222 5788888888775543222233457788888888888888877 678888888888
Q ss_pred EcCCCCCC---CCccccCCCCCcEEEccCCCCccccc-------ccCCCCCccEEeccCCC
Q 000128 204 TLESCLLG---DVATIGDLKKLEILSLRHSDVEELPG-------EIGQLTRLKLLDLSNCM 254 (2123)
Q Consensus 204 ~L~~~~l~---~p~~i~~L~~L~~L~L~~n~l~~lP~-------~i~~L~~L~~L~l~~~~ 254 (2123)
.+.+-.+. ....+.+|++|++||+|..+...-+. .-..|++||.||.+++.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 88776665 34677778888888888764443321 11235566666666554
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.33 E-value=0.00025 Score=57.54 Aligned_cols=40 Identities=38% Similarity=0.600 Sum_probs=26.7
Q ss_pred CCcEEEccCCCCcccccccCCCCCccEEeccCCCCCcccCh
Q 000128 221 KLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRP 261 (2123)
Q Consensus 221 ~L~~L~L~~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~ 261 (2123)
+|++|++++|+|+.+|..+++|++|++|++++|+ +..+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 5677777777777777667777777777777776 555553
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.22 E-value=0.00029 Score=57.17 Aligned_cols=36 Identities=25% Similarity=0.402 Sum_probs=18.3
Q ss_pred CccEEEeecCCCCCCCcccCCCCCccEEEcCCCCCC
Q 000128 176 ELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLG 211 (2123)
Q Consensus 176 ~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~~l~ 211 (2123)
+|++|++++|.|+.+|..+++|++|++|++++|.|+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 455555555555555554555555555555555544
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.16 E-value=1e-05 Score=99.81 Aligned_cols=126 Identities=25% Similarity=0.267 Sum_probs=72.0
Q ss_pred CCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcCCCCCCCCccccC-CCCCcEEEcc
Q 000128 150 PKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLGDVATIGD-LKKLEILSLR 228 (2123)
Q Consensus 150 ~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~~l~~p~~i~~-L~~L~~L~L~ 228 (2123)
.+|.+.+++.|.+. .+.. .+.-++.|+.|+|++|.++... .+..+.+|+.|||++|.+...+.++. -.+|+.|.++
T Consensus 164 n~L~~a~fsyN~L~-~mD~-SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDE-SLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred hhHhhhhcchhhHH-hHHH-HHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeec
Confidence 34555555555543 2222 2244566666666666666554 56666666666666666663222211 1237777777
Q ss_pred CCCCcccccccCCCCCccEEeccCCCCC--cccChhhhCCCCCCCEEEccCcccc
Q 000128 229 HSDVEELPGEIGQLTRLKLLDLSNCMKL--KVIRPNVISSLSRLEELYMGNSFTE 281 (2123)
Q Consensus 229 ~n~l~~lP~~i~~L~~L~~L~l~~~~~l--~~lp~~~i~~L~~L~~L~l~~n~~~ 281 (2123)
+|.++.+ .+|.+|++|+.||+++|-.. .++.+ ++.|..|++|++.||.+-
T Consensus 241 nN~l~tL-~gie~LksL~~LDlsyNll~~hseL~p--LwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNALTTL-RGIENLKSLYGLDLSYNLLSEHSELEP--LWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccHHHhh-hhHHhhhhhhccchhHhhhhcchhhhH--HHHHHHHHHHhhcCCccc
Confidence 7776666 46677777777777776421 12222 556667777777777653
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.99 E-value=7e-05 Score=74.09 Aligned_cols=107 Identities=16% Similarity=0.254 Sum_probs=62.9
Q ss_pred eEEEccCCCCccCCCCC----CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcC
Q 000128 131 TAISIPFRGIYEFPERL----ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLE 206 (2123)
Q Consensus 131 ~~L~l~~n~~~~lp~~~----~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~ 206 (2123)
..++++++.+..+++.. ...+|...++++|.+. .+|..|-..++.+..|++++|.|..+|..+..++.||.|+++
T Consensus 30 h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 30 HFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence 34555555555444322 3445555666666554 566665555566666666666666666666666666666666
Q ss_pred CCCCC-CCccccCCCCCcEEEccCCCCcccccc
Q 000128 207 SCLLG-DVATIGDLKKLEILSLRHSDVEELPGE 238 (2123)
Q Consensus 207 ~~~l~-~p~~i~~L~~L~~L~L~~n~l~~lP~~ 238 (2123)
.|.+. .|..|..|.+|-+|+..+|.+..+|-+
T Consensus 109 ~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 109 FNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred cCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 66655 555555566666666666655555544
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.89 E-value=0.00055 Score=90.80 Aligned_cols=106 Identities=24% Similarity=0.354 Sum_probs=66.7
Q ss_pred CCCceEEEeecCcC-CCccchhHhhCCCCccEEEeecCCCC--CCCcccCCCCCccEEEcCCCCCCCCccccCCCCCcEE
Q 000128 149 CPKLKLFVLFSENL-SLRIPDLFFEGMTELRVLSFTGFRFP--SLPSSIGCLISLRTLTLESCLLGDVATIGDLKKLEIL 225 (2123)
Q Consensus 149 ~~~Lr~L~l~~n~~-~~~~p~~~~~~l~~Lr~L~L~~n~i~--~lp~~i~~L~~Lr~L~L~~~~l~~p~~i~~L~~L~~L 225 (2123)
-.+|+.|++.+... ....|..+...+|.||.|.+.+-.+. ++-.-..++++|+.||+++++++.+..+++|++|++|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVL 200 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHH
Confidence 34677777777542 33455566566777777777776553 2223344667777777777777766777777777777
Q ss_pred EccCCCCcccc--cccCCCCCccEEeccCCC
Q 000128 226 SLRHSDVEELP--GEIGQLTRLKLLDLSNCM 254 (2123)
Q Consensus 226 ~L~~n~l~~lP--~~i~~L~~L~~L~l~~~~ 254 (2123)
.+.+=.+..-+ .++.+|++|++||+|...
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 76654444221 245667777777776654
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.80 E-value=0.00021 Score=79.75 Aligned_cols=41 Identities=27% Similarity=0.281 Sum_probs=18.6
Q ss_pred CCCCCccEEEeeccCCccEeeccccccCCCcCcccceeecccccc
Q 000128 390 EVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLFLHNLMR 434 (2123)
Q Consensus 390 ~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~f~~L~~L~l~~~~~ 434 (2123)
..+|.+-.|.+..+ .+..+........||.|..|.+.+.+-
T Consensus 221 e~~p~~~~LnL~~~----~idswasvD~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 221 EPFPSLSCLNLGAN----NIDSWASVDALNGFPQLVDLRVSENPL 261 (418)
T ss_pred CCCCcchhhhhccc----ccccHHHHHHHcCCchhheeeccCCcc
Confidence 44455555555443 122222223344566666655555443
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.55 E-value=0.00025 Score=70.29 Aligned_cols=102 Identities=17% Similarity=0.243 Sum_probs=54.2
Q ss_pred CCccEEEeecCCCCCCCcc---cCCCCCccEEEcCCCCCC-CCcccc-CCCCCcEEEccCCCCcccccccCCCCCccEEe
Q 000128 175 TELRVLSFTGFRFPSLPSS---IGCLISLRTLTLESCLLG-DVATIG-DLKKLEILSLRHSDVEELPGEIGQLTRLKLLD 249 (2123)
Q Consensus 175 ~~Lr~L~L~~n~i~~lp~~---i~~L~~Lr~L~L~~~~l~-~p~~i~-~L~~L~~L~L~~n~l~~lP~~i~~L~~L~~L~ 249 (2123)
+.+..++|+.+.+-.+++. +.+..+|...+|++|.++ .|+.+. +.+.+.+|++++|.|+++|.++..++.|+.|+
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 3455567777766555543 334455555566666655 443332 23355555666666666665555555666666
Q ss_pred ccCCCCCcccChhhhCCCCCCCEEEccCc
Q 000128 250 LSNCMKLKVIRPNVISSLSRLEELYMGNS 278 (2123)
Q Consensus 250 l~~~~~l~~lp~~~i~~L~~L~~L~l~~n 278 (2123)
++.|. +...|.- |..|.+|-.|+..+|
T Consensus 107 l~~N~-l~~~p~v-i~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 107 LRFNP-LNAEPRV-IAPLIKLDMLDSPEN 133 (177)
T ss_pred cccCc-cccchHH-HHHHHhHHHhcCCCC
Confidence 55555 4444443 444555555544443
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.54 E-value=0.0031 Score=67.43 Aligned_cols=103 Identities=23% Similarity=0.334 Sum_probs=60.5
Q ss_pred CccEEEcCCCCCCCCccccCCCCCcEEEccCCCCcccccccCCC-CCccEEeccCCCCCcc---cChhhhCCCCCCCEEE
Q 000128 199 SLRTLTLESCLLGDVATIGDLKKLEILSLRHSDVEELPGEIGQL-TRLKLLDLSNCMKLKV---IRPNVISSLSRLEELY 274 (2123)
Q Consensus 199 ~Lr~L~L~~~~l~~p~~i~~L~~L~~L~L~~n~l~~lP~~i~~L-~~L~~L~l~~~~~l~~---lp~~~i~~L~~L~~L~ 274 (2123)
+.-.+||++|.+...+.+..+..|.+|.+++|+|+++-..++.+ ++|+.|.+.+|+ +.+ +.+ +..++.|++|.
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~p--La~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDP--LASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcch--hccCCccceee
Confidence 44556666666665555666666677777777776665555543 457777776665 333 322 45566777777
Q ss_pred ccCcccccccccccccChhhhCCCCCCCEEEEec
Q 000128 275 MGNSFTEWEIEGQSNASLVELKQLSRLTTLEVHI 308 (2123)
Q Consensus 275 l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 308 (2123)
+-+|.+.. ..+...--+..+++|+.||+..
T Consensus 120 ll~Npv~~----k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEH----KKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhc----ccCceeEEEEecCcceEeehhh
Confidence 77766541 1122223356677777777653
No 61
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=96.53 E-value=0.00081 Score=81.90 Aligned_cols=37 Identities=22% Similarity=0.405 Sum_probs=31.2
Q ss_pred chhhHHHHhcccCCCCCccChhHHHHHHHhcCCcccc
Q 000128 22 EEAKSLFRLCGLLNGGSQIPIDALMRCGMGLGLLKGV 58 (2123)
Q Consensus 22 ~~lK~cFlyca~Fp~d~~i~~~~Li~~WiaeGfi~~~ 58 (2123)
+++|+||+|||+||+++.|+++.||++|+|+|||+..
T Consensus 249 ~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 249 DELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp TCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 3579999999999999999999999999999999864
No 62
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.39 E-value=0.0011 Score=74.12 Aligned_cols=157 Identities=20% Similarity=0.177 Sum_probs=73.9
Q ss_pred CCCCceEEEeecCcCCCc-cchhHhhCCCCccEEEeecCCCCCCCccc-CCCCCccEEEcCCCCCC---CCccccCCCCC
Q 000128 148 ECPKLKLFVLFSENLSLR-IPDLFFEGMTELRVLSFTGFRFPSLPSSI-GCLISLRTLTLESCLLG---DVATIGDLKKL 222 (2123)
Q Consensus 148 ~~~~Lr~L~l~~n~~~~~-~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i-~~L~~Lr~L~L~~~~l~---~p~~i~~L~~L 222 (2123)
.+++++.+++.+|.++.. --..+..+++.|++|+++.|.+...-++. ..+++|++|-|.++.+. .-.....++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 345555566666555421 01223455666666666666544222222 23455666666665554 12344455555
Q ss_pred cEEEccCCCCccccc---ccC---------------------------CCCCccEEeccCCCCCcccCh-hhhCCCCCCC
Q 000128 223 EILSLRHSDVEELPG---EIG---------------------------QLTRLKLLDLSNCMKLKVIRP-NVISSLSRLE 271 (2123)
Q Consensus 223 ~~L~L~~n~l~~lP~---~i~---------------------------~L~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~ 271 (2123)
+.|.++.|++..+-. .+. ..+++..+.+..|. ++.... .....++.+.
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~ 227 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEKGSEPFPSLS 227 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhcccCCCCCcch
Confidence 555555553331100 000 11233333333333 222211 1123344555
Q ss_pred EEEccCcccccccccccccChhhhCCCCCCCEEEEecCCC
Q 000128 272 ELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEVHIPDA 311 (2123)
Q Consensus 272 ~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 311 (2123)
.|+++.+++. ..+.+.++.++++|+.|.+..+.+
T Consensus 228 ~LnL~~~~id------swasvD~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 228 CLNLGANNID------SWASVDALNGFPQLVDLRVSENPL 261 (418)
T ss_pred hhhhcccccc------cHHHHHHHcCCchhheeeccCCcc
Confidence 5666666554 234567777777777777776654
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.30 E-value=0.0059 Score=65.39 Aligned_cols=81 Identities=25% Similarity=0.351 Sum_probs=44.4
Q ss_pred hCCCCccEEEeecCCCCCCCcccCC-CCCccEEEcCCCCCC---CCccccCCCCCcEEEccCCCCccccc----ccCCCC
Q 000128 172 EGMTELRVLSFTGFRFPSLPSSIGC-LISLRTLTLESCLLG---DVATIGDLKKLEILSLRHSDVEELPG----EIGQLT 243 (2123)
Q Consensus 172 ~~l~~Lr~L~L~~n~i~~lp~~i~~-L~~Lr~L~L~~~~l~---~p~~i~~L~~L~~L~L~~n~l~~lP~----~i~~L~ 243 (2123)
..++.|..|.+.+|+|+.+-..+.. +++|..|.|.+|+|. ++.-+..+++|++|.+-+|.++.-+. -+.+++
T Consensus 61 p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp 140 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLP 140 (233)
T ss_pred CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecC
Confidence 4455555555555555544333332 334555555555544 33444555566666666666554432 266777
Q ss_pred CccEEeccC
Q 000128 244 RLKLLDLSN 252 (2123)
Q Consensus 244 ~L~~L~l~~ 252 (2123)
+|++||..+
T Consensus 141 ~l~~LDF~k 149 (233)
T KOG1644|consen 141 SLRTLDFQK 149 (233)
T ss_pred cceEeehhh
Confidence 777777654
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.06 E-value=0.015 Score=64.65 Aligned_cols=23 Identities=9% Similarity=0.044 Sum_probs=13.5
Q ss_pred CCCCCCCEEEEecCCCCCCChhh
Q 000128 296 KQLSRLTTLEVHIPDAQVMPQDL 318 (2123)
Q Consensus 296 ~~L~~L~~L~l~~~~~~~~~~~~ 318 (2123)
++-+.|++.....|++...+...
T Consensus 154 a~kp~Le~vicgrNRlengs~~~ 176 (388)
T COG5238 154 ADKPKLEVVICGRNRLENGSKEL 176 (388)
T ss_pred ccCCCceEEEeccchhccCcHHH
Confidence 34456666666666666655443
No 65
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.76 E-value=0.03 Score=62.34 Aligned_cols=87 Identities=25% Similarity=0.298 Sum_probs=51.0
Q ss_pred hCCCCccEEEeecCCCC-----CCCcccCCCCCccEEEcCCCCCC------------CCccccCCCCCcEEEccCCCCc-
Q 000128 172 EGMTELRVLSFTGFRFP-----SLPSSIGCLISLRTLTLESCLLG------------DVATIGDLKKLEILSLRHSDVE- 233 (2123)
Q Consensus 172 ~~l~~Lr~L~L~~n~i~-----~lp~~i~~L~~Lr~L~L~~~~l~------------~p~~i~~L~~L~~L~L~~n~l~- 233 (2123)
..+..+..++|++|.|. .+...|.+-++|++.+++.-... ..+.+-++++|+..+|+.|.+.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 34777888888888776 34455666777887777654321 1134455566666666666444
Q ss_pred cccc----ccCCCCCccEEeccCCCCCccc
Q 000128 234 ELPG----EIGQLTRLKLLDLSNCMKLKVI 259 (2123)
Q Consensus 234 ~lP~----~i~~L~~L~~L~l~~~~~l~~l 259 (2123)
+.|. -|.+-+.|.||.+++|. ++.+
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnG-lGp~ 135 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNG-LGPI 135 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCC-CCcc
Confidence 2332 24445566666666655 4433
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.73 E-value=0.0037 Score=69.55 Aligned_cols=105 Identities=25% Similarity=0.336 Sum_probs=62.5
Q ss_pred CCCccEEEcCCCCCCCCccccCCCCCcEEEccCCCCcccccccCCCCCccEEeccCCCCCcccCh-hhhCCCCCCCEEEc
Q 000128 197 LISLRTLTLESCLLGDVATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRP-NVISSLSRLEELYM 275 (2123)
Q Consensus 197 L~~Lr~L~L~~~~l~~p~~i~~L~~L~~L~L~~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l 275 (2123)
+.+.+-|+.-+|.++++....++..|++|.|+-|+|+.+ ..+..+++|+.|+|+.|. +..+.. ..+.++++|+.|++
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhh
Confidence 444555666666666666666667777777777777666 345666777777777666 444432 11566777777777
Q ss_pred cCcccccccccccccChhhhCCCCCCCEEE
Q 000128 276 GNSFTEWEIEGQSNASLVELKQLSRLTTLE 305 (2123)
Q Consensus 276 ~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~ 305 (2123)
..|...+... .+....-++-|++|+.||
T Consensus 96 ~ENPCc~~ag--~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAG--QNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccc--hhHHHHHHHHcccchhcc
Confidence 7776653321 112233456667777655
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.63 E-value=0.043 Score=61.82 Aligned_cols=59 Identities=20% Similarity=0.278 Sum_probs=24.6
Q ss_pred CCCccEEEeecCCCCCCCcccCCCCCccEEEcCCC--CCC--CCccccCCCCCcEEEccCCCCc
Q 000128 174 MTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESC--LLG--DVATIGDLKKLEILSLRHSDVE 233 (2123)
Q Consensus 174 l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~--~l~--~p~~i~~L~~L~~L~L~~n~l~ 233 (2123)
+..|..|++.+..++.+. .+-.|++|++|.++.| ++. .+.-..++++|++|++++|+|+
T Consensus 42 ~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred ccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 334444444444333221 1334455555555555 222 1222223355555555555444
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.07 E-value=0.065 Score=36.25 Aligned_cols=21 Identities=24% Similarity=0.520 Sum_probs=12.4
Q ss_pred CCcEEEccCCCCcccccccCC
Q 000128 221 KLEILSLRHSDVEELPGEIGQ 241 (2123)
Q Consensus 221 ~L~~L~L~~n~l~~lP~~i~~ 241 (2123)
+|++||+++|+++.+|.+|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666655544
No 69
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.94 E-value=0.023 Score=61.15 Aligned_cols=82 Identities=21% Similarity=0.377 Sum_probs=57.2
Q ss_pred hcceeEEcccccchhhhcccccccccceeeeccccEEecccCCCccccccCCcceecCcccEEEeccCCcceecc-cCCc
Q 000128 937 KLNRMNVIDCKMLQQIILQVGEEVKKDCIVFGQFKYLGLHCLPCLTSFCLGNFTLEFPCLEQVIVRECPKMKIFS-QGVL 1015 (2123)
Q Consensus 937 ~L~~L~i~~C~~l~~~~~~~~~e~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~sL~~L~l~~C~~l~~~~-~~~~ 1015 (2123)
.++.+|.++|..+.+...-..+ +++++.|.+.+|..+.++|......-.|+|+.|+|++||.|++.. ..+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~--------l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~ 173 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRD--------LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL 173 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhc--------cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH
Confidence 3566666666655555544444 788888888889999999887666678999999999999988643 2233
Q ss_pred CCcCceEEEec
Q 000128 1016 HTPKLQRLHLR 1026 (2123)
Q Consensus 1016 ~~~~L~~l~~~ 1026 (2123)
.+++|+.+++.
T Consensus 174 ~lknLr~L~l~ 184 (221)
T KOG3864|consen 174 KLKNLRRLHLY 184 (221)
T ss_pred HhhhhHHHHhc
Confidence 35555555544
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.90 E-value=0.059 Score=58.17 Aligned_cols=85 Identities=14% Similarity=0.236 Sum_probs=61.8
Q ss_pred ccEEEcccCCCcchhhhccchhhhhcccccEEEeccccccccc--cCcccccccccEEeeccCCCcccccchhhHHHhhh
Q 000128 860 LKELELNKLPNLLHLWKENSQLSKALLNLATLEISECDKLEKL--VPSSVSLENLVTLEVSKCNELIHLMTLSTAESLVK 937 (2123)
Q Consensus 860 L~~L~l~~~~~l~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l--p~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~ 937 (2123)
++.++-+++ +|..+|++++..+++++.|.+.+|..+.+- -.--+-.++|+.|+|++|+.|++-.-. -+..+++
T Consensus 103 IeaVDAsds----~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~-~L~~lkn 177 (221)
T KOG3864|consen 103 IEAVDASDS----SIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA-CLLKLKN 177 (221)
T ss_pred EEEEecCCc----hHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH-HHHHhhh
Confidence 445566665 455578888888999999999999877652 111125689999999999999987653 3567888
Q ss_pred cceeEEcccccc
Q 000128 938 LNRMNVIDCKML 949 (2123)
Q Consensus 938 L~~L~i~~C~~l 949 (2123)
|+.|.+++-+.+
T Consensus 178 Lr~L~l~~l~~v 189 (221)
T KOG3864|consen 178 LRRLHLYDLPYV 189 (221)
T ss_pred hHHHHhcCchhh
Confidence 888888876543
No 71
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.75 E-value=0.091 Score=59.32 Aligned_cols=82 Identities=23% Similarity=0.275 Sum_probs=40.1
Q ss_pred CCCCccEEEeecC--CCC-CCCcccCCCCCccEEEcCCCCCCCC---ccccCCCCCcEEEccCCCCccccc----ccCCC
Q 000128 173 GMTELRVLSFTGF--RFP-SLPSSIGCLISLRTLTLESCLLGDV---ATIGDLKKLEILSLRHSDVEELPG----EIGQL 242 (2123)
Q Consensus 173 ~l~~Lr~L~L~~n--~i~-~lp~~i~~L~~Lr~L~L~~~~l~~p---~~i~~L~~L~~L~L~~n~l~~lP~----~i~~L 242 (2123)
.+++|+.|.++.| ++. .++-..-++++|++|++++|+|..+ .....+.+|..|++..|..+.+-. .+.-+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll 142 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLL 142 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHh
Confidence 3444444444444 222 2222233335555555555555432 334455566666666665554321 24455
Q ss_pred CCccEEeccCCC
Q 000128 243 TRLKLLDLSNCM 254 (2123)
Q Consensus 243 ~~L~~L~l~~~~ 254 (2123)
++|.+|+-....
T Consensus 143 ~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 143 PSLKYLDGCDVD 154 (260)
T ss_pred hhhccccccccC
Confidence 677777654433
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=89.25 E-value=0.97 Score=47.13 Aligned_cols=40 Identities=23% Similarity=0.343 Sum_probs=14.4
Q ss_pred cchhHhhCCCCccEEEeecCCCCCCCc-ccCCCCCccEEEcC
Q 000128 166 IPDLFFEGMTELRVLSFTGFRFPSLPS-SIGCLISLRTLTLE 206 (2123)
Q Consensus 166 ~p~~~~~~l~~Lr~L~L~~n~i~~lp~-~i~~L~~Lr~L~L~ 206 (2123)
++...|..++.|+.+.+.++ +..++. .+..+..|+.+.+.
T Consensus 26 I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 26 IGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp E-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred eChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 44444444444555554443 333332 23333344444443
No 73
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.59 E-value=0.029 Score=62.74 Aligned_cols=59 Identities=24% Similarity=0.224 Sum_probs=32.8
Q ss_pred CCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcCCCCCC
Q 000128 149 CPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLG 211 (2123)
Q Consensus 149 ~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~~l~ 211 (2123)
+.+.+-|++-++.+.. | ++..+|+.|.||.|+-|.|+.+.. +..+++|+.|+|+.|.|.
T Consensus 18 l~~vkKLNcwg~~L~D-I--sic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~ 76 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD-I--SICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIE 76 (388)
T ss_pred HHHhhhhcccCCCccH-H--HHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccc
Confidence 3344555665555441 1 234566666666666666665532 555566666666665554
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=88.55 E-value=0.15 Score=34.54 Aligned_cols=19 Identities=37% Similarity=0.625 Sum_probs=10.5
Q ss_pred ccEEEeecCCCCCCCcccC
Q 000128 177 LRVLSFTGFRFPSLPSSIG 195 (2123)
Q Consensus 177 Lr~L~L~~n~i~~lp~~i~ 195 (2123)
|++|++++|+++.+|++|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555555444
No 75
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=86.73 E-value=2 Score=44.82 Aligned_cols=106 Identities=17% Similarity=0.311 Sum_probs=56.9
Q ss_pred cchhHhhCCCCccEEEeecCCCCCCC-cccCCCCCccEEEcCCCCCC--CCccccCCCCCcEEEccCCCCcccccc-cCC
Q 000128 166 IPDLFFEGMTELRVLSFTGFRFPSLP-SSIGCLISLRTLTLESCLLG--DVATIGDLKKLEILSLRHSDVEELPGE-IGQ 241 (2123)
Q Consensus 166 ~p~~~~~~l~~Lr~L~L~~n~i~~lp-~~i~~L~~Lr~L~L~~~~l~--~p~~i~~L~~L~~L~L~~n~l~~lP~~-i~~ 241 (2123)
++...|.++.+|+.+.+.. .+..++ .+|..+.+|+.+.+..+ +. .-..+.+..+|+.+.+.. .+..++.. +..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 4556678888888888875 566664 35667778888888775 44 225566776788887765 55555443 455
Q ss_pred CCCccEEeccCCCCCcccChhhhCCCCCCCEEEccC
Q 000128 242 LTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGN 277 (2123)
Q Consensus 242 L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~ 277 (2123)
.++|+.+++..+ +..++...+.+. +|+.+.+..
T Consensus 80 ~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 80 CTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 777777777553 556666666665 777776654
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=84.78 E-value=0.6 Score=29.34 Aligned_cols=16 Identities=31% Similarity=0.588 Sum_probs=6.7
Q ss_pred CCcEEEccCCCCcccc
Q 000128 221 KLEILSLRHSDVEELP 236 (2123)
Q Consensus 221 ~L~~L~L~~n~l~~lP 236 (2123)
+|++|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555554
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=81.04 E-value=0.047 Score=59.59 Aligned_cols=83 Identities=12% Similarity=0.090 Sum_probs=45.0
Q ss_pred hCCCCccEEEeecCCCCCCCcccCCCCCccEEEcCCCCCC-CCccccCCCCCcEEEccCCCCcccccccCCCCCccEEec
Q 000128 172 EGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLG-DVATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDL 250 (2123)
Q Consensus 172 ~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~~l~-~p~~i~~L~~L~~L~L~~n~l~~lP~~i~~L~~L~~L~l 250 (2123)
..++..++||++.|++..+-..++.+..|..|+++.|.+. .|..++.+..++.+++..|..+..|.++++++++++++.
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 3455556666666655555555555555555555555555 455555555555555555555555555555555555555
Q ss_pred cCCC
Q 000128 251 SNCM 254 (2123)
Q Consensus 251 ~~~~ 254 (2123)
-++.
T Consensus 119 k~~~ 122 (326)
T KOG0473|consen 119 KKTE 122 (326)
T ss_pred ccCc
Confidence 4444
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=78.61 E-value=1.2 Score=27.97 Aligned_cols=16 Identities=44% Similarity=0.740 Sum_probs=6.5
Q ss_pred CccEEEeecCCCCCCC
Q 000128 176 ELRVLSFTGFRFPSLP 191 (2123)
Q Consensus 176 ~Lr~L~L~~n~i~~lp 191 (2123)
+|+.|++++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555443
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=77.29 E-value=0.1 Score=57.02 Aligned_cols=59 Identities=8% Similarity=-0.044 Sum_probs=28.8
Q ss_pred CCCCccEEEeecCCCCCCCcccCCCCCccEEEcCCCCCC-CCccccCCCCCcEEEccCCC
Q 000128 173 GMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLG-DVATIGDLKKLEILSLRHSD 231 (2123)
Q Consensus 173 ~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~~l~-~p~~i~~L~~L~~L~L~~n~ 231 (2123)
.+..+..|+++.|.+..+|..++.+..++.+++..|..+ .|.+++.+++++++++.+|.
T Consensus 63 ~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 63 ILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred HHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCc
Confidence 334444445555555555554554444555555444444 44455555555555554443
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=73.27 E-value=2.5 Score=29.92 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=9.4
Q ss_pred CCCcEEEccCCCCcccccc
Q 000128 220 KKLEILSLRHSDVEELPGE 238 (2123)
Q Consensus 220 ~~L~~L~L~~n~l~~lP~~ 238 (2123)
.+|++|++++|+++.+|.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3445555555555555443
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=73.27 E-value=2.5 Score=29.92 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=9.4
Q ss_pred CCCcEEEccCCCCcccccc
Q 000128 220 KKLEILSLRHSDVEELPGE 238 (2123)
Q Consensus 220 ~~L~~L~L~~n~l~~lP~~ 238 (2123)
.+|++|++++|+++.+|.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3445555555555555443
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=70.79 E-value=3.7 Score=29.01 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=18.2
Q ss_pred CCCccEEeccCCCCCcccChhhhC
Q 000128 242 LTRLKLLDLSNCMKLKVIRPNVIS 265 (2123)
Q Consensus 242 L~~L~~L~l~~~~~l~~lp~~~i~ 265 (2123)
|++|++|++++|. +..+|.+++.
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQ-LSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHHcc
Confidence 5688999999988 8888887543
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=70.79 E-value=3.7 Score=29.01 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=18.2
Q ss_pred CCCccEEeccCCCCCcccChhhhC
Q 000128 242 LTRLKLLDLSNCMKLKVIRPNVIS 265 (2123)
Q Consensus 242 L~~L~~L~l~~~~~l~~lp~~~i~ 265 (2123)
|++|++|++++|. +..+|.+++.
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQ-LSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHHcc
Confidence 5688999999988 8888887543
No 84
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=62.92 E-value=0.18 Score=64.67 Aligned_cols=180 Identities=20% Similarity=0.136 Sum_probs=112.5
Q ss_pred ceEEEccCCCCccCCC-----CC-CCCCceEEEeecCcCCCccchhH---hhCC-CCccEEEeecCCCC-----CCCccc
Q 000128 130 PTAISIPFRGIYEFPE-----RL-ECPKLKLFVLFSENLSLRIPDLF---FEGM-TELRVLSFTGFRFP-----SLPSSI 194 (2123)
Q Consensus 130 l~~L~l~~n~~~~lp~-----~~-~~~~Lr~L~l~~n~~~~~~p~~~---~~~l-~~Lr~L~L~~n~i~-----~lp~~i 194 (2123)
++++++.+|.+..-.. .. ..+.|..|++.+|.+.+.--..+ +... ..+++|++..+.++ .+.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 6778888887763221 11 56778888888887763211111 1222 45677777777766 345566
Q ss_pred CCCCCccEEEcCCCCCC------CCcccc----CCCCCcEEEccCCCCcc-----cccccCCCCC-ccEEeccCCCCCcc
Q 000128 195 GCLISLRTLTLESCLLG------DVATIG----DLKKLEILSLRHSDVEE-----LPGEIGQLTR-LKLLDLSNCMKLKV 258 (2123)
Q Consensus 195 ~~L~~Lr~L~L~~~~l~------~p~~i~----~L~~L~~L~L~~n~l~~-----lP~~i~~L~~-L~~L~l~~~~~l~~ 258 (2123)
....+++.++++.|.+. .+..+. ...++++|.+++|.++. +-..+...+. ++.|++..|. +..
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~-l~d 247 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK-LGD 247 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC-cch
Confidence 67788888888888863 123333 47788888888887662 1122444445 6668888777 432
Q ss_pred -----cChhhhCCC-CCCCEEEccCcccccccccccccChhhhCCCCCCCEEEEecCCCCCC
Q 000128 259 -----IRPNVISSL-SRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQVM 314 (2123)
Q Consensus 259 -----lp~~~i~~L-~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 314 (2123)
+.+. +..+ ..++++++..|.+. ..........+.....++.+.++.|.+...
T Consensus 248 ~g~~~L~~~-l~~~~~~l~~l~l~~nsi~---~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 248 VGVEKLLPC-LSVLSETLRVLDLSRNSIT---EKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHHHHHHH-hcccchhhhhhhhhcCCcc---ccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 2232 5555 67788888888876 222233445566677888888887776544
No 85
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=60.00 E-value=5.1 Score=28.39 Aligned_cols=17 Identities=18% Similarity=0.495 Sum_probs=14.5
Q ss_pred cCCccEEEeccCccccc
Q 000128 2058 FPSLEQVIVMDCLKMMT 2074 (2123)
Q Consensus 2058 ~~~L~~~~i~~C~~~~~ 2074 (2123)
||.|+++++++|++++.
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 68899999999998865
No 86
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=52.08 E-value=5.7 Score=28.14 Aligned_cols=16 Identities=31% Similarity=0.692 Sum_probs=7.9
Q ss_pred CCccEEEEcCCCCCcc
Q 000128 1976 QNLTTLEVSKCDGLIN 1991 (2123)
Q Consensus 1976 ~~L~~L~i~~C~~L~~ 1991 (2123)
++|++|++++|+++++
T Consensus 2 ~~L~~L~l~~C~~itD 17 (26)
T smart00367 2 PNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCEeCCCCCCCcCH
Confidence 3455555555555443
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=40.26 E-value=18 Score=25.76 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=11.9
Q ss_pred CCcEEEccCCCCccccc
Q 000128 221 KLEILSLRHSDVEELPG 237 (2123)
Q Consensus 221 ~L~~L~L~~n~l~~lP~ 237 (2123)
+|++|++++|+++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56677777777777764
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=35.59 E-value=29 Score=24.83 Aligned_cols=16 Identities=25% Similarity=0.522 Sum_probs=9.1
Q ss_pred CCCcEEEccCCCCccc
Q 000128 220 KKLEILSLRHSDVEEL 235 (2123)
Q Consensus 220 ~~L~~L~L~~n~l~~l 235 (2123)
.+|+.|++++|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566666666655443
No 89
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=20.28 E-value=53 Score=22.63 Aligned_cols=12 Identities=33% Similarity=0.617 Sum_probs=4.8
Q ss_pred CCcEEEccCCCC
Q 000128 221 KLEILSLRHSDV 232 (2123)
Q Consensus 221 ~L~~L~L~~n~l 232 (2123)
+|++|++++|+|
T Consensus 3 ~L~~L~l~~n~i 14 (24)
T PF13516_consen 3 NLETLDLSNNQI 14 (24)
T ss_dssp T-SEEE-TSSBE
T ss_pred CCCEEEccCCcC
Confidence 444555554443
Done!