Query 000128
Match_columns 2123
No_of_seqs 950 out of 7916
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 18:20:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000128.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000128hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.9E-34 6.5E-39 398.2 37.0 656 151-954 51-722 (768)
2 3rgz_A Protein brassinosteroid 100.0 5.4E-33 1.8E-37 383.7 34.7 668 128-949 50-740 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.3E-30 4.5E-35 357.5 44.7 177 131-317 7-189 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 8.2E-29 2.8E-33 339.7 41.1 574 127-828 24-620 (680)
5 3vq2_A TLR4, TOLL-like recepto 100.0 5.9E-29 2E-33 336.3 33.0 531 130-828 13-556 (606)
6 3t6q_A CD180 antigen; protein- 100.0 1.1E-27 3.7E-32 324.0 39.1 176 130-315 14-195 (606)
7 3t6q_A CD180 antigen; protein- 100.0 1.3E-27 4.6E-32 323.1 38.1 516 127-759 32-558 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 3.6E-28 1.2E-32 328.7 31.4 512 127-804 31-558 (606)
9 3j0a_A TOLL-like receptor 5; m 99.9 5.3E-26 1.8E-30 317.2 36.9 516 132-759 8-558 (844)
10 2z63_A TOLL-like receptor 4, v 99.9 1.5E-25 5.1E-30 301.0 30.8 158 564-759 371-529 (570)
11 2z63_A TOLL-like receptor 4, v 99.9 1.8E-25 6.2E-30 300.2 31.3 501 131-802 10-529 (570)
12 2z81_A CD282 antigen, TOLL-lik 99.9 2.4E-25 8.2E-30 297.3 29.7 350 133-519 10-371 (549)
13 2z81_A CD282 antigen, TOLL-lik 99.9 2.2E-24 7.4E-29 288.0 32.4 152 150-313 5-162 (549)
14 3j0a_A TOLL-like receptor 5; m 99.9 4.2E-24 1.4E-28 298.0 34.3 485 127-662 23-558 (844)
15 4eco_A Uncharacterized protein 99.9 1.2E-24 4.2E-29 292.9 20.4 419 128-635 81-633 (636)
16 4ecn_A Leucine-rich repeat pro 99.9 4.7E-24 1.6E-28 290.1 23.6 392 128-608 323-840 (876)
17 2z7x_B TOLL-like receptor 1, v 99.9 1.1E-23 3.8E-28 278.9 24.5 142 131-280 3-150 (520)
18 2z7x_B TOLL-like receptor 1, v 99.9 2.3E-23 8E-28 275.7 25.6 141 153-311 3-150 (520)
19 4g8a_A TOLL-like receptor 4; l 99.9 1.7E-22 6E-27 275.3 34.9 178 132-317 35-219 (635)
20 4eco_A Uncharacterized protein 99.9 4.8E-24 1.6E-28 287.2 19.0 295 150-485 81-467 (636)
21 4ecn_A Leucine-rich repeat pro 99.9 2.3E-23 7.8E-28 283.4 24.5 165 150-316 323-565 (876)
22 4g8a_A TOLL-like receptor 4; l 99.9 3.6E-22 1.2E-26 272.2 31.8 513 127-759 51-578 (635)
23 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 6.6E-22 2.2E-26 263.9 24.6 154 565-759 352-508 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.1E-21 7.1E-26 259.0 26.5 431 129-632 32-508 (562)
25 3bz5_A Internalin-J, INLJ; leu 99.9 2.2E-21 7.5E-26 249.4 24.5 288 127-530 41-328 (457)
26 1o6v_A Internalin A; bacterial 99.9 1.3E-20 4.3E-25 245.0 28.0 340 127-520 45-386 (466)
27 3o6n_A APL1; leucine-rich repe 99.8 2.8E-20 9.6E-25 236.1 24.7 306 146-520 41-350 (390)
28 1o6v_A Internalin A; bacterial 99.8 6.9E-20 2.4E-24 238.0 28.6 343 148-632 44-386 (466)
29 1jl5_A Outer protein YOPM; leu 99.8 1.4E-20 4.9E-25 241.6 21.5 146 148-314 9-168 (454)
30 3v47_A TOLL-like receptor 5B a 99.8 3E-20 1E-24 241.5 24.9 360 127-520 29-406 (455)
31 3v47_A TOLL-like receptor 5B a 99.8 8.1E-20 2.8E-24 237.5 28.7 310 131-486 13-334 (455)
32 2id5_A Lingo-1, leucine rich r 99.8 1.4E-19 4.6E-24 236.6 26.5 314 131-486 14-331 (477)
33 1jl5_A Outer protein YOPM; leu 99.8 4.3E-20 1.5E-24 237.2 20.5 283 127-485 10-307 (454)
34 4fmz_A Internalin; leucine ric 99.8 3.7E-19 1.3E-23 222.1 27.4 173 127-315 43-215 (347)
35 3oja_B Anopheles plasmodium-re 99.8 1.6E-19 5.4E-24 241.9 24.6 306 146-520 47-356 (597)
36 3o6n_A APL1; leucine-rich repe 99.8 2.2E-19 7.7E-24 227.7 23.4 301 127-486 44-350 (390)
37 4fmz_A Internalin; leucine ric 99.8 6.1E-19 2.1E-23 220.1 26.0 303 148-520 42-344 (347)
38 2id5_A Lingo-1, leucine rich r 99.8 1.2E-18 4.3E-23 227.4 29.7 242 153-486 14-259 (477)
39 3bz5_A Internalin-J, INLJ; leu 99.8 1.3E-18 4.6E-23 223.4 26.1 165 127-315 63-228 (457)
40 3oja_B Anopheles plasmodium-re 99.8 9.4E-19 3.2E-23 234.4 23.8 301 127-486 50-356 (597)
41 2ft3_A Biglycan; proteoglycan, 99.8 5.9E-18 2E-22 209.4 20.9 153 151-316 34-189 (332)
42 1ogq_A PGIP-2, polygalacturona 99.8 1.5E-18 5E-23 212.2 13.8 244 128-434 50-303 (313)
43 1xku_A Decorin; proteoglycan, 99.8 2.3E-17 8E-22 203.9 24.7 154 151-316 32-188 (330)
44 4fcg_A Uncharacterized protein 99.8 5E-18 1.7E-22 208.7 18.3 220 127-403 80-311 (328)
45 4fcg_A Uncharacterized protein 99.8 1.1E-17 3.7E-22 205.6 19.7 222 173-484 79-310 (328)
46 2z80_A TOLL-like receptor 2, v 99.7 1.6E-17 5.3E-22 207.5 18.4 274 131-486 34-312 (353)
47 2ft3_A Biglycan; proteoglycan, 99.7 5.9E-17 2E-21 200.3 21.6 292 129-486 34-331 (332)
48 1xku_A Decorin; proteoglycan, 99.7 2.2E-16 7.7E-21 195.0 25.0 292 129-485 32-329 (330)
49 1ogq_A PGIP-2, polygalacturona 99.7 1.8E-17 6.3E-22 202.4 14.8 251 150-466 50-308 (313)
50 3ogk_B Coronatine-insensitive 99.7 3.4E-18 1.2E-22 230.4 5.3 432 148-660 71-547 (592)
51 2z66_A Variable lymphocyte rec 99.7 1.5E-16 5.1E-21 194.4 16.9 174 132-314 11-190 (306)
52 3zyj_A Leucine-rich repeat-con 99.7 5E-16 1.7E-20 200.0 22.1 176 129-315 44-223 (440)
53 3zyi_A Leucine-rich repeat-con 99.7 5.4E-16 1.8E-20 200.5 22.4 177 129-316 55-235 (452)
54 3ogk_B Coronatine-insensitive 99.7 7.5E-17 2.6E-21 217.2 14.6 397 447-947 110-524 (592)
55 3g06_A SSPH2 (leucine-rich rep 99.7 2.4E-15 8.4E-20 198.3 27.2 258 129-489 41-298 (622)
56 2p1m_B Transport inhibitor res 99.7 9.2E-18 3.2E-22 226.3 3.9 214 564-827 103-324 (594)
57 2z80_A TOLL-like receptor 2, v 99.7 4.5E-16 1.5E-20 194.3 18.0 250 127-404 51-312 (353)
58 1ozn_A Reticulon 4 receptor; N 99.7 5.3E-16 1.8E-20 187.2 17.8 194 127-329 31-233 (285)
59 1z7x_W Ribonuclease inhibitor; 99.7 5.3E-18 1.8E-22 220.8 -0.2 374 150-632 3-409 (461)
60 1ozn_A Reticulon 4 receptor; N 99.7 1.4E-15 4.6E-20 183.7 20.4 219 130-404 13-236 (285)
61 2p1m_B Transport inhibitor res 99.7 3.8E-17 1.3E-21 220.3 6.9 401 447-949 103-519 (594)
62 2z66_A Variable lymphocyte rec 99.6 1.7E-15 5.8E-20 185.0 16.8 222 127-404 27-259 (306)
63 1p9a_G Platelet glycoprotein I 99.6 5E-15 1.7E-19 178.3 20.0 181 127-318 9-191 (290)
64 3zyj_A Leucine-rich repeat-con 99.6 6.3E-15 2.1E-19 189.7 22.3 221 127-404 63-290 (440)
65 3zyi_A Leucine-rich repeat-con 99.6 7.6E-15 2.6E-19 189.7 22.1 221 127-404 74-301 (452)
66 2o6q_A Variable lymphocyte rec 99.6 1.2E-14 4E-19 173.7 20.9 181 128-318 16-200 (270)
67 1wwl_A Monocyte differentiatio 99.6 4.8E-16 1.6E-20 190.0 7.1 180 129-314 44-243 (312)
68 3o53_A Protein LRIM1, AGAP0063 99.6 2.8E-16 9.5E-21 192.6 4.7 243 148-436 32-276 (317)
69 2o6q_A Variable lymphocyte rec 99.6 1.9E-14 6.3E-19 171.9 19.9 177 127-312 36-218 (270)
70 2z62_A TOLL-like receptor 4, v 99.6 1.8E-14 6E-19 173.0 18.0 176 132-315 11-193 (276)
71 1wwl_A Monocyte differentiatio 99.6 7.6E-16 2.6E-20 188.2 6.1 247 148-486 41-307 (312)
72 1h6u_A Internalin H; cell adhe 99.6 3.4E-14 1.2E-18 172.9 19.3 185 127-328 40-224 (308)
73 3m19_A Variable lymphocyte rec 99.6 3.4E-14 1.2E-18 167.6 18.6 176 129-314 15-194 (251)
74 3rfs_A Internalin B, repeat mo 99.6 3.4E-14 1.2E-18 169.8 18.1 175 127-312 40-218 (272)
75 1p9a_G Platelet glycoprotein I 99.6 3.9E-14 1.3E-18 170.4 18.3 158 148-317 8-166 (290)
76 1z7x_W Ribonuclease inhibitor; 99.6 1.3E-16 4.5E-21 207.6 -3.7 181 128-314 3-214 (461)
77 1h6u_A Internalin H; cell adhe 99.5 4.3E-14 1.5E-18 171.9 18.5 189 148-403 39-227 (308)
78 3g06_A SSPH2 (leucine-rich rep 99.5 1.7E-13 6E-18 180.7 25.6 171 127-331 60-231 (622)
79 2xwt_C Thyrotropin receptor; s 99.5 2.1E-14 7.3E-19 168.1 15.0 190 127-327 30-232 (239)
80 2z62_A TOLL-like receptor 4, v 99.5 2.7E-14 9.2E-19 171.4 14.9 182 127-318 27-219 (276)
81 3o53_A Protein LRIM1, AGAP0063 99.5 6E-15 2E-19 180.7 7.8 234 127-403 33-272 (317)
82 2xwt_C Thyrotropin receptor; s 99.5 4.6E-14 1.6E-18 165.2 14.9 164 139-314 22-195 (239)
83 3rfs_A Internalin B, repeat mo 99.5 4.7E-14 1.6E-18 168.6 14.6 170 135-316 26-198 (272)
84 1h6t_A Internalin B; cell adhe 99.5 1.3E-13 4.3E-18 166.2 17.2 172 127-315 45-216 (291)
85 3oja_A Leucine-rich immune mol 99.5 7.3E-15 2.5E-19 190.5 6.6 235 151-431 35-271 (487)
86 4glp_A Monocyte differentiatio 99.5 2.5E-14 8.6E-19 174.6 9.6 178 129-314 65-266 (310)
87 3oja_A Leucine-rich immune mol 99.5 6.3E-14 2.1E-18 181.7 13.4 170 129-317 35-209 (487)
88 3m19_A Variable lymphocyte rec 99.5 7.2E-13 2.4E-17 156.2 18.6 154 127-282 34-193 (251)
89 2v70_A SLIT-2, SLIT homolog 2 99.4 5.3E-13 1.8E-17 153.4 14.7 149 131-281 14-166 (220)
90 3e6j_A Variable lymphocyte rec 99.4 9.6E-13 3.3E-17 152.4 16.6 149 130-281 21-172 (229)
91 2o6s_A Variable lymphocyte rec 99.4 4.2E-13 1.4E-17 153.3 12.9 165 131-312 10-178 (208)
92 2v9t_B SLIT homolog 2 protein 99.4 9.4E-13 3.2E-17 151.3 15.1 148 131-281 14-165 (220)
93 4ay9_X Follicle-stimulating ho 99.4 1.4E-12 4.8E-17 162.0 17.2 147 133-281 14-167 (350)
94 1m9s_A Internalin B; cell inva 99.4 6.6E-13 2.3E-17 175.1 14.9 172 127-315 42-213 (605)
95 4ay9_X Follicle-stimulating ho 99.4 2E-12 6.8E-17 160.6 18.0 118 154-276 13-136 (350)
96 1h6t_A Internalin B; cell adhe 99.4 1E-12 3.5E-17 158.2 14.6 165 148-329 44-208 (291)
97 4glp_A Monocyte differentiatio 99.4 9.2E-13 3.1E-17 160.8 13.3 188 128-327 91-300 (310)
98 4ezg_A Putative uncharacterize 99.4 1.5E-12 5.1E-17 147.1 13.1 146 128-280 44-193 (197)
99 1xeu_A Internalin C; cellular 99.4 6E-13 2.1E-17 157.5 10.1 169 129-315 20-188 (263)
100 4ezg_A Putative uncharacterize 99.4 2.1E-12 7.1E-17 145.9 13.6 151 148-313 42-195 (197)
101 2xot_A Amphoterin-induced prot 99.4 1.7E-12 5.9E-17 161.8 13.7 171 131-311 21-201 (361)
102 2v9t_B SLIT homolog 2 protein 99.3 4E-12 1.4E-16 146.1 14.4 148 153-312 14-165 (220)
103 3cvr_A Invasion plasmid antige 99.3 9.1E-12 3.1E-16 162.1 18.9 162 129-318 60-226 (571)
104 2ca6_A RAN GTPase-activating p 99.3 2.2E-13 7.6E-18 172.1 3.6 181 128-312 32-257 (386)
105 2v70_A SLIT-2, SLIT homolog 2 99.3 7.2E-12 2.4E-16 144.0 14.3 148 153-312 14-166 (220)
106 2o6s_A Variable lymphocyte rec 99.3 5.2E-12 1.8E-16 144.1 12.3 149 127-284 27-181 (208)
107 1xeu_A Internalin C; cellular 99.3 1.2E-11 4.1E-16 146.3 15.1 146 127-281 40-185 (263)
108 2ast_B S-phase kinase-associat 99.3 1.1E-12 3.9E-17 162.4 6.3 174 128-310 70-258 (336)
109 3e6j_A Variable lymphocyte rec 99.3 1.6E-11 5.4E-16 142.2 15.1 149 152-313 21-173 (229)
110 1m9s_A Internalin B; cell inva 99.3 6.5E-12 2.2E-16 165.7 13.3 179 134-329 27-205 (605)
111 2xot_A Amphoterin-induced prot 99.3 7.8E-12 2.7E-16 155.9 12.9 153 127-281 38-202 (361)
112 2ast_B S-phase kinase-associat 99.3 2.3E-12 7.7E-17 159.7 6.7 128 175-309 70-205 (336)
113 3goz_A Leucine-rich repeat-con 99.3 2.5E-12 8.5E-17 160.6 7.0 46 358-403 217-263 (362)
114 3cvr_A Invasion plasmid antige 99.3 3E-11 1E-15 157.2 16.2 159 127-313 79-244 (571)
115 3goz_A Leucine-rich repeat-con 99.2 1.5E-12 5.1E-17 162.7 3.7 183 128-315 22-241 (362)
116 2ca6_A RAN GTPase-activating p 99.2 8.7E-13 3E-17 166.7 -0.0 166 142-311 23-228 (386)
117 2ell_A Acidic leucine-rich nuc 99.2 1.7E-11 5.8E-16 134.5 9.8 136 175-315 24-163 (168)
118 2ell_A Acidic leucine-rich nuc 99.2 2.2E-11 7.5E-16 133.6 9.8 129 150-281 24-160 (168)
119 2a5y_B CED-4; apoptosis; HET: 99.2 6.5E-13 2.2E-17 174.6 -3.6 99 5-109 360-473 (549)
120 2wfh_A SLIT homolog 2 protein 99.2 8.6E-11 3E-15 131.6 12.9 123 154-281 14-139 (193)
121 1w8a_A SLIT protein; signaling 99.2 9.8E-11 3.3E-15 131.3 12.0 105 176-281 30-139 (192)
122 2je0_A Acidic leucine-rich nuc 99.2 2.5E-11 8.5E-16 130.2 6.7 106 175-281 17-126 (149)
123 1dce_A Protein (RAB geranylger 99.1 3.9E-12 1.3E-16 166.8 0.1 189 127-326 348-565 (567)
124 1w8a_A SLIT protein; signaling 99.1 2E-10 6.8E-15 128.8 13.5 125 131-256 11-139 (192)
125 4b8c_D Glucose-repressible alc 99.1 4.4E-11 1.5E-15 162.1 9.7 153 127-283 172-331 (727)
126 2je0_A Acidic leucine-rich nuc 99.1 5.2E-11 1.8E-15 127.6 7.9 126 148-276 15-148 (149)
127 2wfh_A SLIT homolog 2 protein 99.1 3.8E-10 1.3E-14 126.4 13.4 126 177-312 12-139 (193)
128 1a9n_A U2A', U2A'; complex (nu 99.1 1.1E-10 3.7E-15 129.0 8.7 107 173-281 17-126 (176)
129 1a9n_A U2A', U2A'; complex (nu 99.1 4.6E-11 1.6E-15 132.0 4.9 131 147-281 16-153 (176)
130 4b8c_D Glucose-repressible alc 99.0 3.9E-11 1.3E-15 162.6 2.9 132 148-282 222-355 (727)
131 2o6r_A Variable lymphocyte rec 99.0 1.4E-09 4.6E-14 120.4 14.0 106 175-281 28-137 (177)
132 2o6r_A Variable lymphocyte rec 99.0 1.5E-09 5.1E-14 120.1 13.6 126 130-257 9-138 (177)
133 1ds9_A Outer arm dynein; leuci 99.0 6.2E-12 2.1E-16 142.1 -8.9 132 171-305 44-180 (198)
134 1dce_A Protein (RAB geranylger 98.9 1.8E-09 6E-14 141.7 11.5 123 176-306 442-567 (567)
135 2r9u_A Variable lymphocyte rec 98.9 4.3E-09 1.5E-13 115.5 12.1 101 178-281 15-118 (174)
136 3g39_A Variable lymphocyte rec 98.9 4.3E-09 1.5E-13 115.1 11.7 102 177-281 11-115 (170)
137 1ds9_A Outer arm dynein; leuci 98.8 6.7E-11 2.3E-15 133.6 -6.4 147 129-281 24-185 (198)
138 1vt4_I APAF-1 related killer D 98.8 4.6E-09 1.6E-13 138.5 8.0 84 5-100 352-436 (1221)
139 2r9u_A Variable lymphocyte rec 98.7 3.4E-08 1.1E-12 108.4 12.1 104 153-261 15-122 (174)
140 3g39_A Variable lymphocyte rec 98.7 7E-08 2.4E-12 105.4 12.0 98 153-254 12-113 (170)
141 3sb4_A Hypothetical leucine ri 98.7 3E-08 1E-12 121.7 9.9 180 127-318 48-316 (329)
142 3sfz_A APAF-1, apoptotic pepti 98.5 1.3E-07 4.3E-12 139.2 9.1 89 6-107 362-452 (1249)
143 2ifg_A High affinity nerve gro 98.4 3.8E-07 1.3E-11 113.0 11.2 100 179-281 12-116 (347)
144 3sb4_A Hypothetical leucine ri 98.4 6.3E-07 2.2E-11 109.9 11.4 101 128-229 25-157 (329)
145 3un9_A NLR family member X1; l 98.4 4.7E-08 1.6E-12 121.2 -0.2 153 127-281 71-252 (372)
146 3un9_A NLR family member X1; l 98.4 4.5E-08 1.6E-12 121.3 -0.4 162 149-315 71-255 (372)
147 2ifg_A High affinity nerve gro 98.2 1.9E-06 6.3E-11 106.7 10.3 97 155-254 13-114 (347)
148 4fdw_A Leucine rich hypothetic 98.1 2.6E-05 8.8E-10 97.5 16.9 230 151-403 136-380 (401)
149 1z6t_A APAF-1, apoptotic prote 98.1 3.7E-06 1.3E-10 112.2 9.2 86 6-104 362-449 (591)
150 4fdw_A Leucine rich hypothetic 98.0 5.9E-05 2E-09 94.3 16.2 185 129-330 158-354 (401)
151 3e4g_A ATP synthase subunit S, 97.8 1E-05 3.6E-10 86.5 4.2 88 859-951 62-154 (176)
152 2ra8_A Uncharacterized protein 97.6 3.9E-05 1.3E-09 94.0 5.8 179 127-312 106-320 (362)
153 3e4g_A ATP synthase subunit S, 97.5 0.00012 3.9E-09 78.4 6.4 63 886-949 61-127 (176)
154 4fs7_A Uncharacterized protein 97.4 0.0021 7.3E-08 80.5 18.6 123 148-277 69-194 (394)
155 4fs7_A Uncharacterized protein 97.4 0.0027 9.1E-08 79.6 18.2 300 127-484 70-375 (394)
156 1io0_A Tropomodulin; LRR prote 97.4 7.5E-05 2.6E-09 82.4 3.5 84 171-254 32-134 (185)
157 2ra8_A Uncharacterized protein 97.1 0.00036 1.2E-08 85.4 6.6 149 127-281 138-320 (362)
158 1io0_A Tropomodulin; LRR prote 97.1 0.00014 4.8E-09 80.2 2.4 117 191-312 29-164 (185)
159 3rw6_A Nuclear RNA export fact 96.7 0.00067 2.3E-08 78.4 3.8 60 173-232 168-232 (267)
160 3rw6_A Nuclear RNA export fact 96.6 0.00069 2.4E-08 78.3 3.0 60 219-281 169-233 (267)
161 4gt6_A Cell surface protein; l 96.2 0.3 1E-05 60.8 23.8 143 151-308 65-214 (394)
162 4gt6_A Cell surface protein; l 93.7 0.19 6.5E-06 62.5 11.0 80 194-276 261-342 (394)
163 3rfe_A Platelet glycoprotein I 92.7 0.14 4.8E-06 52.1 6.2 56 223-281 11-68 (130)
164 4h09_A Hypothetical leucine ri 90.8 0.98 3.4E-05 55.6 12.3 127 169-307 211-341 (379)
165 3rfe_A Platelet glycoprotein I 89.8 0.34 1.2E-05 49.2 5.5 36 176-211 32-68 (130)
166 1pgv_A TMD-1, tropomodulin TMD 88.5 0.23 7.9E-06 54.0 3.4 62 172-233 38-111 (197)
167 4h09_A Hypothetical leucine ri 87.8 1.9 6.6E-05 52.9 11.7 170 148-328 156-340 (379)
168 1pgv_A TMD-1, tropomodulin TMD 86.5 0.31 1.1E-05 53.0 2.9 59 172-230 67-136 (197)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.9e-34 Score=398.17 Aligned_cols=656 Identities=15% Similarity=0.051 Sum_probs=343.2
Q ss_pred CceEEEeecCcCCCc---cchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcCCCCCC--CCc--cccCCCCCc
Q 000128 151 KLKLFVLFSENLSLR---IPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLG--DVA--TIGDLKKLE 223 (2123)
Q Consensus 151 ~Lr~L~l~~n~~~~~---~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~~l~--~p~--~i~~L~~L~ 223 (2123)
+++.|+++++.+.+. +|+.+ .++++|++++++.+.+..+|+.++++++|++|+|++|.+. .|. .++++++|+
T Consensus 51 ~v~~L~L~~~~l~g~~~~l~~~l-~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~ 129 (768)
T 3rgz_A 51 KVTSIDLSSKPLNVGFSAVSSSL-LSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLK 129 (768)
T ss_dssp EEEEEECTTSCCCEEHHHHHHHT-TTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCC
T ss_pred cEEEEECCCCCcCCccCccChhH-hccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCC
Confidence 344445544444444 44433 4556666666666555555555666666666666666655 333 556666666
Q ss_pred EEEccCCCCc-cccccc-CCCCCccEEeccCCCCCcccChhh---hCCCCCCCEEEccCcccccccccccccChhhhCCC
Q 000128 224 ILSLRHSDVE-ELPGEI-GQLTRLKLLDLSNCMKLKVIRPNV---ISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQL 298 (2123)
Q Consensus 224 ~L~L~~n~l~-~lP~~i-~~L~~L~~L~l~~~~~l~~lp~~~---i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L 298 (2123)
+|++++|.+. .+|..+ +++++|++|++++|. +...++.. ++++++|++|++++|.+.+.. .++.+
T Consensus 130 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---------~~~~l 199 (768)
T 3rgz_A 130 FLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS-ISGANVVGWVLSDGCGELKHLAISGNKISGDV---------DVSRC 199 (768)
T ss_dssp EEECCSSEEECCSSCCSCCCCTTCSEEECCSSC-CEEETHHHHHHTTCCTTCCEEECCSSEEESCC---------BCTTC
T ss_pred EEECcCCccCCcCCHHHhccCCCCCEEECCCCc-cCCcCChhhhhhccCCCCCEEECCCCcccccC---------CcccC
Confidence 6666666554 334333 556666666666665 44333332 455666666666666554211 12455
Q ss_pred CCCCEEEEecCCCCCCChhhhccccceeeeccCCccCCCCCcccceeeecccccCccccchhHHHhccCCcEEecccccC
Q 000128 299 SRLTTLEVHIPDAQVMPQDLLSVELERYRICIGDVWSWSGEHETSRRLKLSALNKCIYLGYGMQMLLKGIEDLYLDELNG 378 (2123)
Q Consensus 299 ~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~p~~i~~~l~~L~~L~L~~~~~ 378 (2123)
++|++|+++.|.+....+. ...+++|+.|++++..-...+|.++.. +++|++|++++|..
T Consensus 200 ~~L~~L~Ls~n~l~~~~~~-------------------l~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~Ls~n~l 259 (768)
T 3rgz_A 200 VNLEFLDVSSNNFSTGIPF-------------------LGDCSALQHLDISGNKLSGDFSRAIST-CTELKLLNISSNQF 259 (768)
T ss_dssp TTCCEEECCSSCCCSCCCB-------------------CTTCCSCCEEECCSSCCCSCHHHHTTT-CSSCCEEECCSSCC
T ss_pred CcCCEEECcCCcCCCCCcc-------------------cccCCCCCEEECcCCcCCCcccHHHhc-CCCCCEEECCCCcc
Confidence 5666666665554432111 122233444444433222223333332 56677777776543
Q ss_pred ccccccccCCCCCCCCccEEEeeccCCccEeeccccccCCCcCcccceeeccccccchhhhcCCCCcccCCCccEEEEec
Q 000128 379 FQNALLELEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLFLHNLMRLEMVYRGQLTEHSFSKLRIIKVCQ 458 (2123)
Q Consensus 379 ~~~~~~~l~~~~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~ 458 (2123)
. ...|. ..+++|++|++.+|.....++.. ....+++|++|++.++.-...+ +...+.+++|++|++.+
T Consensus 260 ~-~~~~~----~~l~~L~~L~L~~n~l~~~ip~~----~~~~~~~L~~L~Ls~n~l~~~~---p~~~~~l~~L~~L~L~~ 327 (768)
T 3rgz_A 260 V-GPIPP----LPLKSLQYLSLAENKFTGEIPDF----LSGACDTLTGLDLSGNHFYGAV---PPFFGSCSLLESLALSS 327 (768)
T ss_dssp E-ESCCC----CCCTTCCEEECCSSEEEESCCCC----SCTTCTTCSEEECCSSEEEECC---CGGGGGCTTCCEEECCS
T ss_pred c-CccCc----cccCCCCEEECcCCccCCccCHH----HHhhcCcCCEEECcCCcCCCcc---chHHhcCCCccEEECCC
Confidence 2 22222 25677777777776322222221 1122466777777664322122 22235577777777777
Q ss_pred CCCCCCCCChhhhhhcCCCcEEEecccccchhhhccCCccccccccccccc-ccceeecccCccccccccccCCCCCCCc
Q 000128 459 CDNLKHLFSFPMARNLLQLQKLKVSFCESLKLIVGKESSETHNVHEIINFT-QLHSLTLQCLPQLTSSGFDLERPLLSPT 537 (2123)
Q Consensus 459 c~~L~~lp~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~fp-~L~~L~l~~~~~L~~l~~~~~~~~~~p~ 537 (2123)
|.-...+|. ..+..+++|++|++++|.....++. ....++ +|+.|+++++.--..+ .+.
T Consensus 328 n~l~~~ip~-~~l~~l~~L~~L~Ls~n~l~~~~p~----------~l~~l~~~L~~L~Ls~N~l~~~~---------~~~ 387 (768)
T 3rgz_A 328 NNFSGELPM-DTLLKMRGLKVLDLSFNEFSGELPE----------SLTNLSASLLTLDLSSNNFSGPI---------LPN 387 (768)
T ss_dssp SEEEEECCH-HHHTTCTTCCEEECCSSEEEECCCT----------THHHHTTTCSEEECCSSEEEEEC---------CTT
T ss_pred CcccCcCCH-HHHhcCCCCCEEeCcCCccCccccH----------HHHhhhcCCcEEEccCCCcCCCc---------Chh
Confidence 532224543 3366777788888877643322221 112233 6777776665311111 000
Q ss_pred cccccccccceecccCcccccccccccCCCccceeeccccccccccccccccccccccCcceEEEecCCCcccccchhhH
Q 000128 538 ISATTLAFEEVIAEDDSDESLFNNKVIFPNLEKLKLSSINIEKIWHDQYPLMLNSCSQNLTNLTVETCSRLKFLFSYSMV 617 (2123)
Q Consensus 538 l~~~~~~~~~~i~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~ 617 (2123)
+. ...+++|++|++++|+++...+..+ ..+++|+.|++++|. +....|. .+
T Consensus 388 ~~----------------------~~~~~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~Ls~N~-l~~~~p~-~l 438 (768)
T 3rgz_A 388 LC----------------------QNPKNTLQELYLQNNGFTGKIPPTL-----SNCSELVSLHLSFNY-LSGTIPS-SL 438 (768)
T ss_dssp TT----------------------CSTTCCCCEEECCSSEEEEECCGGG-----GGCTTCCEEECCSSE-EESCCCG-GG
T ss_pred hh----------------------hcccCCccEEECCCCccccccCHHH-----hcCCCCCEEECcCCc-ccCcccH-HH
Confidence 00 0125678888888887775543332 347788888888753 4433332 24
Q ss_pred hhhhccceEEEeecCCcceeeccCccccccccCCcceeeeeccCCCcccccccCCcccccccCCCCCccccccccCccce
Q 000128 618 DSLVRLQQLEIRKCESMEAVIDTTDIEINSVEFPSLHHLRIVDCPNLRSFISVNSSEEKILHTDTQPLFDEKLVLPRLEV 697 (2123)
Q Consensus 618 ~~l~~L~~L~I~~C~~L~~i~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Le~ 697 (2123)
..+++|+.|++++|.-... .+..+..+++|+.|++++|.-...+| .....+++|+.
T Consensus 439 ~~l~~L~~L~L~~n~l~~~------~p~~~~~l~~L~~L~L~~N~l~~~~p------------------~~l~~l~~L~~ 494 (768)
T 3rgz_A 439 GSLSKLRDLKLWLNMLEGE------IPQELMYVKTLETLILDFNDLTGEIP------------------SGLSNCTNLNW 494 (768)
T ss_dssp GGCTTCCEEECCSSCCCSC------CCGGGGGCTTCCEEECCSSCCCSCCC------------------GGGGGCTTCCE
T ss_pred hcCCCCCEEECCCCcccCc------CCHHHcCCCCceEEEecCCcccCcCC------------------HHHhcCCCCCE
Confidence 5678888888887762222 22234467788888887775433332 12346778888
Q ss_pred eeeccccCcchhccccCCCCccCCccEEEeccCCcccccCCCcHHHHHhcCCccEEEEecCCCcceeecccCCCCCcccc
Q 000128 698 LSIDMMDNMRKIWHHQLALNSFSKLKALEVTNCGKLANIFPANIIMRRRLDRLEYLKVDGCASVEEIIGETSSNGNICVE 777 (2123)
Q Consensus 698 L~i~~c~~l~~i~~~~~~~~~l~~L~~L~i~~C~~L~~~~p~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~g~~~~~ 777 (2123)
|+++++.-...+ +..+..+++|+.|++++|... ...|.. ++.+++|+.|++++|.-...++..
T Consensus 495 L~L~~N~l~~~~---p~~~~~l~~L~~L~L~~N~l~-~~~p~~---l~~l~~L~~L~Ls~N~l~g~ip~~---------- 557 (768)
T 3rgz_A 495 ISLSNNRLTGEI---PKWIGRLENLAILKLSNNSFS-GNIPAE---LGDCRSLIWLDLNTNLFNGTIPAA---------- 557 (768)
T ss_dssp EECCSSCCCSCC---CGGGGGCTTCCEEECCSSCCE-EECCGG---GGGCTTCCEEECCSSEEESBCCGG----------
T ss_pred EEccCCccCCcC---ChHHhcCCCCCEEECCCCccc-CcCCHH---HcCCCCCCEEECCCCccCCcCChH----------
Confidence 888876433233 334556678888888886543 334543 577888888888886543333211
Q ss_pred ccchhhhcccccccccCceecccCcccccccCCCcccccc-cccEEEEccccccee-eccCCccccccCCCC-ccccCcc
Q 000128 778 EEEDEEARRRFVFPRLTWLNLSLLPRLKSFCPGVDISEWP-LLKSLGVFGCDSVEI-LFASPEYFSCDSQRP-LFVLDPK 854 (2123)
Q Consensus 778 ~~~~~~~~~~~~~p~L~~L~L~~~~~L~~l~~~~~~~~~~-~L~~L~i~~C~~L~~-~~~~L~~L~l~~~~~-~~~~~~~ 854 (2123)
......+..+.+.....+..+........+. .-..+.+.+...... .++.+..+++..+.. ...+...
T Consensus 558 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~ 628 (768)
T 3rgz_A 558 ---------MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628 (768)
T ss_dssp ---------GGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC
T ss_pred ---------HhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhh
Confidence 1111222222222111111110000000000 000011111100000 011222222222110 1122234
Q ss_pred cccCCccEEEcccCCCcchhhhccchhhhhcccccEEEeccccccccccCcccccccccEEeeccCCCcccccchhhHHH
Q 000128 855 VAFPGLKELELNKLPNLLHLWKENSQLSKALLNLATLEISECDKLEKLVPSSVSLENLVTLEVSKCNELIHLMTLSTAES 934 (2123)
Q Consensus 855 ~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 934 (2123)
..+++|+.|+++++.--..+|... ..+++|+.|+++++.....+|..++.+++|++|++++|.--..+|.. ...
T Consensus 629 ~~l~~L~~LdLs~N~l~g~ip~~l----~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~--l~~ 702 (768)
T 3rgz_A 629 DNNGSMMFLDMSYNMLSGYIPKEI----GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA--MSA 702 (768)
T ss_dssp SSSBCCCEEECCSSCCBSCCCGGG----GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG--GGG
T ss_pred hccccccEEECcCCcccccCCHHH----hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChH--HhC
Confidence 557788888888884333455432 34888888999887777788888888888999999888633355543 677
Q ss_pred hhhcceeEEcccccchhhhc
Q 000128 935 LVKLNRMNVIDCKMLQQIIL 954 (2123)
Q Consensus 935 l~~L~~L~i~~C~~l~~~~~ 954 (2123)
+++|+.|++++|.....+|.
T Consensus 703 l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 703 LTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp CCCCSEEECCSSEEEEECCS
T ss_pred CCCCCEEECcCCcccccCCC
Confidence 88888888888877766664
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.4e-33 Score=383.69 Aligned_cols=668 Identities=15% Similarity=0.040 Sum_probs=395.2
Q ss_pred CCceEEEccCCCCcc----CCCCC-CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCC-CCCc--ccCCCCC
Q 000128 128 KDPTAISIPFRGIYE----FPERL-ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFP-SLPS--SIGCLIS 199 (2123)
Q Consensus 128 ~~l~~L~l~~n~~~~----lp~~~-~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~-~lp~--~i~~L~~ 199 (2123)
.+++.|+++++.+.. +++.+ ++++|+.++++.+.+. .+|.. |..+++|++|+|++|.+. .+|. .++++++
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~ 127 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG 127 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE-ECCCC-CCCCTTCCEEECCSSEEEEEGGGGGGGGGCTT
T ss_pred CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcC-CCchh-hccCCCCCEEECCCCcCCCcCCChHHHhCCCC
Confidence 467888888777662 55443 6677777777666543 23344 477888888888888776 4666 7788888
Q ss_pred ccEEEcCCCCCC--CCccc-cCCCCCcEEEccCCCCcccc-cc---cCCCCCccEEeccCCCCCcccChhhhCCCCCCCE
Q 000128 200 LRTLTLESCLLG--DVATI-GDLKKLEILSLRHSDVEELP-GE---IGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEE 272 (2123)
Q Consensus 200 Lr~L~L~~~~l~--~p~~i-~~L~~L~~L~L~~n~l~~lP-~~---i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~ 272 (2123)
|++|++++|.+. .|..+ .++++|++|++++|+++..+ .. ++++++|++|++++|. +....+ ++++++|++
T Consensus 128 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~--~~~l~~L~~ 204 (768)
T 3rgz_A 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK-ISGDVD--VSRCVNLEF 204 (768)
T ss_dssp CCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSE-EESCCB--CTTCTTCCE
T ss_pred CCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCc-ccccCC--cccCCcCCE
Confidence 888888888766 34333 77888888888888777543 33 6778888888888877 443333 467888888
Q ss_pred EEccCcccccccccccccChhhhCCCCCCCEEEEecCCCCCC-ChhhhccccceeeeccCCccCCCCCcccceeeecccc
Q 000128 273 LYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQVM-PQDLLSVELERYRICIGDVWSWSGEHETSRRLKLSAL 351 (2123)
Q Consensus 273 L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~-~~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~ 351 (2123)
|++++|.+.+.+ + .++++++|++|+++.|.+... |..+ ..+.+|+.|+++++
T Consensus 205 L~Ls~n~l~~~~-------~-~l~~l~~L~~L~Ls~n~l~~~~~~~l-------------------~~l~~L~~L~Ls~n 257 (768)
T 3rgz_A 205 LDVSSNNFSTGI-------P-FLGDCSALQHLDISGNKLSGDFSRAI-------------------STCTELKLLNISSN 257 (768)
T ss_dssp EECCSSCCCSCC-------C-BCTTCCSCCEEECCSSCCCSCHHHHT-------------------TTCSSCCEEECCSS
T ss_pred EECcCCcCCCCC-------c-ccccCCCCCEEECcCCcCCCcccHHH-------------------hcCCCCCEEECCCC
Confidence 888888776321 2 277788888888887776543 2222 22334444444433
Q ss_pred cCccccchhHHHhccCCcEEecccccCccccccccCCCCCCCCccEEEeeccCCccEeeccccccCCCcCcccceeeccc
Q 000128 352 NKCIYLGYGMQMLLKGIEDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLFLHN 431 (2123)
Q Consensus 352 ~~~~~~p~~i~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~f~~L~~L~l~~ 431 (2123)
.-...+|.. .+++|++|+++++... ..+|.. ....+++|++|++.+|.....++. ....+++|++|++.+
T Consensus 258 ~l~~~~~~~---~l~~L~~L~L~~n~l~-~~ip~~-~~~~~~~L~~L~Ls~n~l~~~~p~-----~~~~l~~L~~L~L~~ 327 (768)
T 3rgz_A 258 QFVGPIPPL---PLKSLQYLSLAENKFT-GEIPDF-LSGACDTLTGLDLSGNHFYGAVPP-----FFGSCSLLESLALSS 327 (768)
T ss_dssp CCEESCCCC---CCTTCCEEECCSSEEE-ESCCCC-SCTTCTTCSEEECCSSEEEECCCG-----GGGGCTTCCEEECCS
T ss_pred cccCccCcc---ccCCCCEEECcCCccC-CccCHH-HHhhcCcCCEEECcCCcCCCccch-----HHhcCCCccEEECCC
Confidence 222222322 2567777777775433 223332 122247778888777733222222 234567777777776
Q ss_pred cccchhhhcCCCCcccCCCccEEEEecCCCCCCCCChhhhhhcC-CCcEEEecccccchhhhccCCcccccccccccccc
Q 000128 432 LMRLEMVYRGQLTEHSFSKLRIIKVCQCDNLKHLFSFPMARNLL-QLQKLKVSFCESLKLIVGKESSETHNVHEIINFTQ 510 (2123)
Q Consensus 432 ~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~~~L~-~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~fp~ 510 (2123)
..-...++.. ..+.+++|++|++.+|.-...+|. .+..++ +|++|++++|.....++... ....+++
T Consensus 328 n~l~~~ip~~--~l~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~~L~~L~Ls~N~l~~~~~~~~--------~~~~~~~ 395 (768)
T 3rgz_A 328 NNFSGELPMD--TLLKMRGLKVLDLSFNEFSGELPE--SLTNLSASLLTLDLSSNNFSGPILPNL--------CQNPKNT 395 (768)
T ss_dssp SEEEEECCHH--HHTTCTTCCEEECCSSEEEECCCT--THHHHTTTCSEEECCSSEEEEECCTTT--------TCSTTCC
T ss_pred CcccCcCCHH--HHhcCCCCCEEeCcCCccCccccH--HHHhhhcCCcEEEccCCCcCCCcChhh--------hhcccCC
Confidence 5322122100 134578899999988643335555 566776 89999999876443333211 0112567
Q ss_pred cceeecccCccccccccccCCCCCCCccccccccccceecccCcccccccccccCCCccceeeccccccccccccccccc
Q 000128 511 LHSLTLQCLPQLTSSGFDLERPLLSPTISATTLAFEEVIAEDDSDESLFNNKVIFPNLEKLKLSSINIEKIWHDQYPLML 590 (2123)
Q Consensus 511 L~~L~l~~~~~L~~l~~~~~~~~~~p~l~~~~~~~~~~i~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~ 590 (2123)
|+.|++.++.--..+ | .....+++|+.|++++|.++...+..+
T Consensus 396 L~~L~L~~n~l~~~~----------p-----------------------~~l~~l~~L~~L~Ls~N~l~~~~p~~l---- 438 (768)
T 3rgz_A 396 LQELYLQNNGFTGKI----------P-----------------------PTLSNCSELVSLHLSFNYLSGTIPSSL---- 438 (768)
T ss_dssp CCEEECCSSEEEEEC----------C-----------------------GGGGGCTTCCEEECCSSEEESCCCGGG----
T ss_pred ccEEECCCCcccccc----------C-----------------------HHHhcCCCCCEEECcCCcccCcccHHH----
Confidence 888888776421111 1 111347889999999998876544433
Q ss_pred cccccCcceEEEecCCCcccccchhhHhhhhccceEEEeecCCcceeeccCccccccccCCcceeeeeccCCCccccccc
Q 000128 591 NSCSQNLTNLTVETCSRLKFLFSYSMVDSLVRLQQLEIRKCESMEAVIDTTDIEINSVEFPSLHHLRIVDCPNLRSFISV 670 (2123)
Q Consensus 591 ~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~i~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~ 670 (2123)
..+++|+.|++++|.....+ |. .+..+++|+.|++++|.-... .+..+..+++|+.|++++|.-...+|
T Consensus 439 -~~l~~L~~L~L~~n~l~~~~-p~-~~~~l~~L~~L~L~~N~l~~~------~p~~l~~l~~L~~L~L~~N~l~~~~p-- 507 (768)
T 3rgz_A 439 -GSLSKLRDLKLWLNMLEGEI-PQ-ELMYVKTLETLILDFNDLTGE------IPSGLSNCTNLNWISLSNNRLTGEIP-- 507 (768)
T ss_dssp -GGCTTCCEEECCSSCCCSCC-CG-GGGGCTTCCEEECCSSCCCSC------CCGGGGGCTTCCEEECCSSCCCSCCC--
T ss_pred -hcCCCCCEEECCCCcccCcC-CH-HHcCCCCceEEEecCCcccCc------CCHHHhcCCCCCEEEccCCccCCcCC--
Confidence 35889999999986544333 33 345688999999998763222 22335588999999998887544443
Q ss_pred CCcccccccCCCCCccccccccCccceeeeccccCcchhccccCCCCccCCccEEEeccCCcccccCCCcHHHHHhcCCc
Q 000128 671 NSSEEKILHTDTQPLFDEKLVLPRLEVLSIDMMDNMRKIWHHQLALNSFSKLKALEVTNCGKLANIFPANIIMRRRLDRL 750 (2123)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~Le~L~i~~c~~l~~i~~~~~~~~~l~~L~~L~i~~C~~L~~~~p~~~~~~~~l~~L 750 (2123)
.....+++|+.|+++++.-...+ +..+..+++|+.|++++|+-... .|.. ......+
T Consensus 508 ----------------~~~~~l~~L~~L~L~~N~l~~~~---p~~l~~l~~L~~L~Ls~N~l~g~-ip~~---~~~~~~~ 564 (768)
T 3rgz_A 508 ----------------KWIGRLENLAILKLSNNSFSGNI---PAELGDCRSLIWLDLNTNLFNGT-IPAA---MFKQSGK 564 (768)
T ss_dssp ----------------GGGGGCTTCCEEECCSSCCEEEC---CGGGGGCTTCCEEECCSSEEESB-CCGG---GGTTTTC
T ss_pred ----------------hHHhcCCCCCEEECCCCcccCcC---CHHHcCCCCCCEEECCCCccCCc-CChH---Hhcccch
Confidence 13447889999999997544344 34566778999999999765444 4543 2333333
Q ss_pred cEEEEecCCCcceeecccCCCCCccc-----cccchhhhcccccccccCceecccCcccccccCCCcccccccccEEEEc
Q 000128 751 EYLKVDGCASVEEIIGETSSNGNICV-----EEEEDEEARRRFVFPRLTWLNLSLLPRLKSFCPGVDISEWPLLKSLGVF 825 (2123)
Q Consensus 751 ~~L~i~~C~~l~~i~~~~~~~g~~~~-----~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~l~~~~~~~~~~~L~~L~i~ 825 (2123)
..+.+.....+..+..... ...|. .+-..........++.+..+.+.... +....+.. ...++
T Consensus 565 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~-~~g~~~~~-~~~l~-------- 632 (768)
T 3rgz_A 565 IAANFIAGKRYVYIKNDGM--KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV-YGGHTSPT-FDNNG-------- 632 (768)
T ss_dssp BCCSTTCSCEEEEEECCSC--CTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCE-EEEECCCS-CSSSB--------
T ss_pred hhhhccccccccccccccc--cccccccccccccccccchhhhccccccccccccce-ecccCchh-hhccc--------
Confidence 3333322222111100000 00000 00000000001111222222111110 00000000 01233
Q ss_pred ccccceeeccCCccccccCCCCc-cccCcccccCCccEEEcccCCCcchhhhccchhhhhcccccEEEeccccccccccC
Q 000128 826 GCDSVEILFASPEYFSCDSQRPL-FVLDPKVAFPGLKELELNKLPNLLHLWKENSQLSKALLNLATLEISECDKLEKLVP 904 (2123)
Q Consensus 826 ~C~~L~~~~~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~ 904 (2123)
+++.|+++.+... .++...+.+++|+.|+++++.--..+|... ..+++|+.|++++|.-...+|.
T Consensus 633 ----------~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l----~~L~~L~~LdLs~N~l~g~ip~ 698 (768)
T 3rgz_A 633 ----------SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV----GDLRGLNILDLSSNKLDGRIPQ 698 (768)
T ss_dssp ----------CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG----GGCTTCCEEECCSSCCEECCCG
T ss_pred ----------cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHH----hCCCCCCEEECCCCcccCcCCh
Confidence 4444555544422 233456778999999999995444666543 3489999999999888889999
Q ss_pred cccccccccEEeeccCCCcccccchhhHHHhhhcceeEEcccccc
Q 000128 905 SSVSLENLVTLEVSKCNELIHLMTLSTAESLVKLNRMNVIDCKML 949 (2123)
Q Consensus 905 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l 949 (2123)
.+..+++|++|++++|+--..+|... .+.++....+.+++.+
T Consensus 699 ~l~~l~~L~~L~ls~N~l~g~iP~~~---~~~~~~~~~~~gN~~L 740 (768)
T 3rgz_A 699 AMSALTMLTEIDLSNNNLSGPIPEMG---QFETFPPAKFLNNPGL 740 (768)
T ss_dssp GGGGCCCCSEEECCSSEEEEECCSSS---SGGGSCGGGGCSCTEE
T ss_pred HHhCCCCCCEEECcCCcccccCCCch---hhccCCHHHhcCCchh
Confidence 99999999999999997555666542 3345555556666555
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.3e-30 Score=357.46 Aligned_cols=177 Identities=21% Similarity=0.214 Sum_probs=141.0
Q ss_pred eEEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCC-CcccCCCCCccEEEcCCCC
Q 000128 131 TAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSL-PSSIGCLISLRTLTLESCL 209 (2123)
Q Consensus 131 ~~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~l-p~~i~~L~~Lr~L~L~~~~ 209 (2123)
+.++.+++++..+|..+. +++++|++++|.+. .++...|.++++|++|++++|.++.+ |..++++++|++|++++|.
T Consensus 7 ~~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP-TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp SEEECCSSCCSSCCSCSC-TTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred CeeECCCCCccccccccC-CCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence 467888888888887653 78999999999887 45655568899999999999998866 6678899999999999999
Q ss_pred CC-CC-ccccCCCCCcEEEccCCCCcccc-cccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCccccccccc
Q 000128 210 LG-DV-ATIGDLKKLEILSLRHSDVEELP-GEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEG 286 (2123)
Q Consensus 210 l~-~p-~~i~~L~~L~~L~L~~n~l~~lP-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~ 286 (2123)
++ .| ..|+++.+|++|++++|++..+| ..++++++|++|++++|. +..++++.++++++|++|++++|.+.+.
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~--- 160 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQAL--- 160 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCCCB---
T ss_pred cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCccccc---
Confidence 88 45 36899999999999999988886 568899999999999998 5555555588999999999999887632
Q ss_pred ccccChhhh--CCCCCCCEEEEecCCCCCCChh
Q 000128 287 QSNASLVEL--KQLSRLTTLEVHIPDAQVMPQD 317 (2123)
Q Consensus 287 ~~~~~~~~l--~~L~~L~~L~l~~~~~~~~~~~ 317 (2123)
.+..+ ..+++|+.|+++.|.+..++..
T Consensus 161 ----~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 189 (680)
T 1ziw_A 161 ----KSEELDIFANSSLKKLELSSNQIKEFSPG 189 (680)
T ss_dssp ----CHHHHGGGTTCEESEEECTTCCCCCBCTT
T ss_pred ----CHHHhhccccccccEEECCCCcccccChh
Confidence 23333 3557899999988887766543
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=8.2e-29 Score=339.66 Aligned_cols=574 Identities=17% Similarity=0.147 Sum_probs=356.3
Q ss_pred CCCceEEEccCCCCccCCCC-C-CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCc-ccCCCCCccEE
Q 000128 127 HKDPTAISIPFRGIYEFPER-L-ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPS-SIGCLISLRTL 203 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp~~-~-~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~-~i~~L~~Lr~L 203 (2123)
+.++++|++++|.+..++.. + ++++|++|++++|.+.+..| ..|.++++|++|++++|.++.+|. +|+++++|++|
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTEL 102 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCT-THHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCH-HHHhcccCcCEEECCCCccCccChhhhccCCCCCEE
Confidence 47899999999999988764 3 89999999999999885445 456899999999999999999987 69999999999
Q ss_pred EcCCCCCC-C-CccccCCCCCcEEEccCCCCccc-ccccCCCCCccEEeccCCCCCcccChhhhC--CCCCCCEEEccCc
Q 000128 204 TLESCLLG-D-VATIGDLKKLEILSLRHSDVEEL-PGEIGQLTRLKLLDLSNCMKLKVIRPNVIS--SLSRLEELYMGNS 278 (2123)
Q Consensus 204 ~L~~~~l~-~-p~~i~~L~~L~~L~L~~n~l~~l-P~~i~~L~~L~~L~l~~~~~l~~lp~~~i~--~L~~L~~L~l~~n 278 (2123)
++++|.++ . +..++++++|++|++++|.+..+ |..++++++|++|++++|. +..+++..++ .+++|++|++++|
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTC
T ss_pred ECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCC
Confidence 99999998 4 36899999999999999998865 5668999999999999998 7777765454 5689999999999
Q ss_pred ccccccccccccChhhhCCCCCCCEEEEecCCCCCCChhhhccccceeeeccCCccCCCCCcccceeeecccccCccccc
Q 000128 279 FTEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQVMPQDLLSVELERYRICIGDVWSWSGEHETSRRLKLSALNKCIYLG 358 (2123)
Q Consensus 279 ~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~p 358 (2123)
.+.+ ..+..++.+.+|+.|++..+.+..-........+ ...+++.|++++..-....|
T Consensus 182 ~l~~-------~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l---------------~~~~L~~L~L~~n~l~~~~~ 239 (680)
T 1ziw_A 182 QIKE-------FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL---------------ANTSIRNLSLSNSQLSTTSN 239 (680)
T ss_dssp CCCC-------BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHH---------------TTSCCCEEECTTSCCCEECT
T ss_pred cccc-------cChhhhhhhhhhhhhhccccccChhhHHHHHHHh---------------hhccccEEEccCCcccccCh
Confidence 8873 2356778888999998876654311000000000 11345556665443333334
Q ss_pred hhHHHh-ccCCcEEecccccCccccccccCCCCCCCCccEEEeeccCCccEeeccccccCCCcCcccceeeccccccch-
Q 000128 359 YGMQML-LKGIEDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLFLHNLMRLE- 436 (2123)
Q Consensus 359 ~~i~~~-l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~- 436 (2123)
.++... .++|+.|+++++... ...+. .++.+++|++|++.+|......+. ....+++|+.|++.+.....
T Consensus 240 ~~~~~l~~~~L~~L~Ls~n~l~-~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~~L~L~~~~~~~~ 311 (680)
T 1ziw_A 240 TTFLGLKWTNLTMLDLSYNNLN-VVGND--SFAWLPQLEYFFLEYNNIQHLFSH-----SLHGLFNVRYLNLKRSFTKQS 311 (680)
T ss_dssp TTTGGGGGSCCCEEECTTSCCC-EECTT--TTTTCTTCCEEECCSCCBSEECTT-----TTTTCTTCCEEECTTCBCCC-
T ss_pred hHhhccCcCCCCEEECCCCCcC-ccCcc--cccCcccccEeeCCCCccCccChh-----hhcCCCCccEEeccchhhhcc
Confidence 454432 145888888886543 22222 247888899999988743322222 33567788888887532111
Q ss_pred ----hhhc-CCCCcccCCCccEEEEecCCCCCCCCChhhhhhcCCCcEEEeccccc-chhhhccCCcccccccccccccc
Q 000128 437 ----MVYR-GQLTEHSFSKLRIIKVCQCDNLKHLFSFPMARNLLQLQKLKVSFCES-LKLIVGKESSETHNVHEIINFTQ 510 (2123)
Q Consensus 437 ----~~~~-~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~~~L~~L~~L~l~~c~~-l~~i~~~~~~~~~~~~~~~~fp~ 510 (2123)
.++. .....+.+++|++|++.++ ++..+++ ..+..+++|++|++++|.. +..+.... ......++
T Consensus 312 ~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~l~~~~-------f~~~~~~~ 382 (680)
T 1ziw_A 312 ISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKS-NMFTGLINLKYLSLSNSFTSLRTLTNET-------FVSLAHSP 382 (680)
T ss_dssp -----CCEECTTTTTTCTTCCEEECCSC-CBCCCCT-TTTTTCTTCCEEECTTCBSCCCEECTTT-------TGGGTTSC
T ss_pred cccccccccChhhcccCCCCCEEECCCC-ccCCCCh-hHhccccCCcEEECCCCchhhhhcchhh-------hcccccCc
Confidence 1100 0112345788888888875 5666654 3567788888888887642 22111100 00011245
Q ss_pred cceeecccCccccccccccCCCCCCCccccccccccceecccCcccccccccccCCCccceeecccccccccc-cccccc
Q 000128 511 LHSLTLQCLPQLTSSGFDLERPLLSPTISATTLAFEEVIAEDDSDESLFNNKVIFPNLEKLKLSSINIEKIWH-DQYPLM 589 (2123)
Q Consensus 511 L~~L~l~~~~~L~~l~~~~~~~~~~p~l~~~~~~~~~~i~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~-~~~~~~ 589 (2123)
|+.|+++++. +..+ . | .....+++|+.|++++|.+....+ ..
T Consensus 383 L~~L~L~~n~-l~~~--~-------~-----------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~---- 425 (680)
T 1ziw_A 383 LHILNLTKNK-ISKI--E-------S-----------------------DAFSWLGHLEVLDLGLNEIGQELTGQE---- 425 (680)
T ss_dssp CCEEECTTSC-CCEE--C-------T-----------------------TTTTTCTTCCEEECCSSCCEEECCSGG----
T ss_pred CceEECCCCC-CCeE--C-------h-----------------------hhhhCCCCCCEEeCCCCcCccccCccc----
Confidence 6666666543 2211 0 0 011236777777777777654222 22
Q ss_pred ccccccCcceEEEecCCCcccccchhhHhhhhccceEEEeecCCcceeeccCccccccccCCcceeeeeccCCCcccccc
Q 000128 590 LNSCSQNLTNLTVETCSRLKFLFSYSMVDSLVRLQQLEIRKCESMEAVIDTTDIEINSVEFPSLHHLRIVDCPNLRSFIS 669 (2123)
Q Consensus 590 ~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~i~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~ 669 (2123)
+..+++|+.|++++|. +..+.+. .+..+++|+.|++++|. +..+ +..+..+..+++|+.|+++++. +..++.
T Consensus 426 -~~~l~~L~~L~Ls~n~-l~~~~~~-~~~~~~~L~~L~l~~n~-l~~~---~~~p~~~~~l~~L~~L~Ls~N~-l~~i~~ 497 (680)
T 1ziw_A 426 -WRGLENIFEIYLSYNK-YLQLTRN-SFALVPSLQRLMLRRVA-LKNV---DSSPSPFQPLRNLTILDLSNNN-IANIND 497 (680)
T ss_dssp -GTTCTTCCEEECCSCS-EEECCTT-TTTTCTTCCEEECTTSC-CBCT---TCSSCTTTTCTTCCEEECCSSC-CCCCCT
T ss_pred -ccCcccccEEecCCCC-cceeChh-hhhcCcccccchhcccc-cccc---ccCCcccccCCCCCEEECCCCC-CCcCCh
Confidence 2346777777777754 4444332 23457777777777654 2111 1222334567777777776653 333321
Q ss_pred cCCcccccccCCCCCccccccccCccceeeeccccCcchhcccc------CCCCccCCccEEEeccCCcccccCCCcHHH
Q 000128 670 VNSSEEKILHTDTQPLFDEKLVLPRLEVLSIDMMDNMRKIWHHQ------LALNSFSKLKALEVTNCGKLANIFPANIIM 743 (2123)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~Le~L~i~~c~~l~~i~~~~------~~~~~l~~L~~L~i~~C~~L~~~~p~~~~~ 743 (2123)
.....+++|+.|+++++ .++.++... ..+..+++|+.|+++++ .+..+ |.. .
T Consensus 498 -----------------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i-~~~--~ 555 (680)
T 1ziw_A 498 -----------------DMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEI-PVE--V 555 (680)
T ss_dssp -----------------TTTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCC-CTT--T
T ss_pred -----------------hhhccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCC-CHH--H
Confidence 11235677777777764 455543221 12455667777777774 34443 332 3
Q ss_pred HHhcCCccEEEEecCCCcceeecccCCCCCccccccchhhhcccccccccCceecccCcccccccCCCcccccccccEEE
Q 000128 744 RRRLDRLEYLKVDGCASVEEIIGETSSNGNICVEEEEDEEARRRFVFPRLTWLNLSLLPRLKSFCPGVDISEWPLLKSLG 823 (2123)
Q Consensus 744 ~~~l~~L~~L~i~~C~~l~~i~~~~~~~g~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~l~~~~~~~~~~~L~~L~ 823 (2123)
++.+++|++|+++++ .++.+.. ..-..+++|+.|.|+++ .++.+........+++|+.++
T Consensus 556 ~~~l~~L~~L~Ls~N-~l~~l~~------------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~ 615 (680)
T 1ziw_A 556 FKDLFELKIIDLGLN-NLNTLPA------------------SVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELD 615 (680)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCT------------------TTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEE
T ss_pred cccccCcceeECCCC-CCCcCCH------------------hHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEE
Confidence 566777777777653 4443321 01124567777777776 455554432221356666666
Q ss_pred Ecccc
Q 000128 824 VFGCD 828 (2123)
Q Consensus 824 i~~C~ 828 (2123)
+++++
T Consensus 616 l~~N~ 620 (680)
T 1ziw_A 616 MRFNP 620 (680)
T ss_dssp CTTCC
T ss_pred ccCCC
Confidence 66544
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=5.9e-29 Score=336.33 Aligned_cols=531 Identities=17% Similarity=0.156 Sum_probs=303.9
Q ss_pred ceEEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCC-CcccCCCCCccEEEcCCC
Q 000128 130 PTAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSL-PSSIGCLISLRTLTLESC 208 (2123)
Q Consensus 130 l~~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~l-p~~i~~L~~Lr~L~L~~~ 208 (2123)
-+.++.+++++..+|..+ .+++++|++++|.+.+ ++...|.++++|++|++++|.++.+ |..|+++++|++|++++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDI-PSSTKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TTEEECTTSCCSSCCTTS-CTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CCceEccCCCcccCCCCC-CCCcCEEECCCCCcCE-eChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 357888888999998866 3889999999999874 5554568999999999999999977 567899999999999999
Q ss_pred CCC--CCccccCCCCCcEEEccCCCCcccc-cccCCCCCccEEeccCCCCCc--ccChhhhCCCCCCCEEEccCcccccc
Q 000128 209 LLG--DVATIGDLKKLEILSLRHSDVEELP-GEIGQLTRLKLLDLSNCMKLK--VIRPNVISSLSRLEELYMGNSFTEWE 283 (2123)
Q Consensus 209 ~l~--~p~~i~~L~~L~~L~L~~n~l~~lP-~~i~~L~~L~~L~l~~~~~l~--~lp~~~i~~L~~L~~L~l~~n~~~~~ 283 (2123)
.++ .|..|+++.+|++|++++|++..+| ..++++++|++|++++|. +. .+|.. ++++++|++|++++|.+.+.
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAY-FSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGG-GGTCTTCCEEECCSSCCCEE
T ss_pred cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCc-ccceechHh-HhhcCCCCEEEccCCcceec
Confidence 988 3688999999999999999999887 679999999999999998 55 46776 89999999999999988732
Q ss_pred cccccccChhhhCCCCC-CCEEEEecCCCCCCChhhhccccceeeeccCCccCCCCCcccceeeecccccCc-cccchhH
Q 000128 284 IEGQSNASLVELKQLSR-LTTLEVHIPDAQVMPQDLLSVELERYRICIGDVWSWSGEHETSRRLKLSALNKC-IYLGYGM 361 (2123)
Q Consensus 284 ~~~~~~~~~~~l~~L~~-L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~-~~~p~~i 361 (2123)
. ......+.+++. +..|+++.|.+..++...+. ..+++.+++++.... ...|.++
T Consensus 169 ~----~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~-------------------~~~L~~L~L~~n~~~~~~~~~~~ 225 (606)
T 3vq2_A 169 T----VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQ-------------------GIKLHELTLRGNFNSSNIMKTCL 225 (606)
T ss_dssp C----TTTTHHHHHCTTCCCEEECTTCCCCEECTTTTT-------------------TCEEEEEEEESCCSCHHHHHHHH
T ss_pred C----hhhhhhhhccccccceeeccCCCcceeCccccc-------------------CceeeeeeccCCccchhHHHHHh
Confidence 2 122334444443 56899999888776654411 113445555533221 1223343
Q ss_pred HHhccCCcEEecccccCcc-ccccccCCCCCCCCccEEEeeccCCccEeeccccccCCCcCcccceeeccccccchhhhc
Q 000128 362 QMLLKGIEDLYLDELNGFQ-NALLELEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLFLHNLMRLEMVYR 440 (2123)
Q Consensus 362 ~~~l~~L~~L~L~~~~~~~-~~~~~l~~~~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~ 440 (2123)
.. +++++.+.+....... ..++.+ ....+..+..+ .++.+.+.....+....
T Consensus 226 ~~-l~~L~~l~l~~~~~~~~~~l~~~-~~~~~~~l~~l------------------------~l~~l~l~~~~~~~~~~- 278 (606)
T 3vq2_A 226 QN-LAGLHVHRLILGEFKDERNLEIF-EPSIMEGLCDV------------------------TIDEFRLTYTNDFSDDI- 278 (606)
T ss_dssp HT-TTTCEEEEEEEECCTTSCCCSCC-CGGGGTTGGGS------------------------EEEEEEECCCTTCCGGG-
T ss_pred cc-ccccccccccccccccCCccccc-ChHHhhhhhhc------------------------cHhheeccccccccccc-
Confidence 32 4555555443211100 000000 00001111111 12222222222222111
Q ss_pred CCCCcccCCCccEEEEecCCCCCCCCChhhhhhcCCCcEEEecccccchhhhccCCcccccccccccccccceeecccCc
Q 000128 441 GQLTEHSFSKLRIIKVCQCDNLKHLFSFPMARNLLQLQKLKVSFCESLKLIVGKESSETHNVHEIINFTQLHSLTLQCLP 520 (2123)
Q Consensus 441 ~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~fp~L~~L~l~~~~ 520 (2123)
.....+++|+.|++.++ .++.+| .+..+++|++|++++|.. +.++ .. .+++|+.|++.++.
T Consensus 279 --~~~~~l~~L~~L~l~~~-~~~~l~---~l~~~~~L~~L~l~~n~l-~~lp-----------~~-~l~~L~~L~l~~n~ 339 (606)
T 3vq2_A 279 --VKFHCLANVSAMSLAGV-SIKYLE---DVPKHFKWQSLSIIRCQL-KQFP-----------TL-DLPFLKSLTLTMNK 339 (606)
T ss_dssp --GSCGGGTTCSEEEEESC-CCCCCC---CCCTTCCCSEEEEESCCC-SSCC-----------CC-CCSSCCEEEEESCS
T ss_pred --cccccCCCCCEEEecCc-cchhhh---hccccccCCEEEcccccC-cccc-----------cC-CCCccceeeccCCc
Confidence 11334556666666653 344544 245556666666666543 3322 01 34555555555543
Q ss_pred cccccccccCCCCCCCccccccccccceecccCcccccccccccCCCccceeeccccccccc--cccccccccccccCcc
Q 000128 521 QLTSSGFDLERPLLSPTISATTLAFEEVIAEDDSDESLFNNKVIFPNLEKLKLSSINIEKIW--HDQYPLMLNSCSQNLT 598 (2123)
Q Consensus 521 ~L~~l~~~~~~~~~~p~l~~~~~~~~~~i~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~--~~~~~~~~~~~l~~L~ 598 (2123)
.+..+ ....+++|++|++++|.++.+. +.. +..+++|+
T Consensus 340 ~~~~~-----------------------------------~~~~l~~L~~L~ls~n~l~~~~~~~~~-----~~~~~~L~ 379 (606)
T 3vq2_A 340 GSISF-----------------------------------KKVALPSLSYLDLSRNALSFSGCCSYS-----DLGTNSLR 379 (606)
T ss_dssp SCEEC-----------------------------------CCCCCTTCCEEECCSSCEEEEEECCHH-----HHCCSCCC
T ss_pred Cccch-----------------------------------hhccCCCCCEEECcCCccCCCcchhhh-----hccCCccc
Confidence 22211 0012556666666666555442 111 12356666
Q ss_pred eEEEecCCCcccccchhhHhhhhccceEEEeecCCcceeeccCccccccccCCcceeeeeccCCCcccccccCCcccccc
Q 000128 599 NLTVETCSRLKFLFSYSMVDSLVRLQQLEIRKCESMEAVIDTTDIEINSVEFPSLHHLRIVDCPNLRSFISVNSSEEKIL 678 (2123)
Q Consensus 599 ~L~l~~c~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~i~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~ 678 (2123)
.|++++|. +..++ ..+..+++|+.|++++|. +..+.. ...+..+++|++|++++|......+
T Consensus 380 ~L~L~~n~-l~~~~--~~~~~l~~L~~L~l~~n~-l~~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~---------- 441 (606)
T 3vq2_A 380 HLDLSFNG-AIIMS--ANFMGLEELQHLDFQHST-LKRVTE----FSAFLSLEKLLYLDISYTNTKIDFD---------- 441 (606)
T ss_dssp EEECCSCS-EEEEC--CCCTTCTTCCEEECTTSE-EESTTT----TTTTTTCTTCCEEECTTSCCEECCT----------
T ss_pred EeECCCCc-cccch--hhccCCCCCCeeECCCCc-cCCccC----hhhhhccccCCEEECcCCCCCccch----------
Confidence 66666643 44333 223445666666666554 211100 0123356666666666654322221
Q ss_pred cCCCCCccccccccCccceeeeccccCcch-hccccCCCCccCCccEEEeccCCcccccCCCcHHHHHhcCCccEEEEec
Q 000128 679 HTDTQPLFDEKLVLPRLEVLSIDMMDNMRK-IWHHQLALNSFSKLKALEVTNCGKLANIFPANIIMRRRLDRLEYLKVDG 757 (2123)
Q Consensus 679 ~~~~~~~~~~~~~~~~Le~L~i~~c~~l~~-i~~~~~~~~~l~~L~~L~i~~C~~L~~~~p~~~~~~~~l~~L~~L~i~~ 757 (2123)
.....+++|+.|+++++. ++. + .+..+..+++|+.|++++|. +..+.|.. +..+++|++|++++
T Consensus 442 --------~~~~~l~~L~~L~l~~n~-l~~~~--~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~---~~~l~~L~~L~Ls~ 506 (606)
T 3vq2_A 442 --------GIFLGLTSLNTLKMAGNS-FKDNT--LSNVFANTTNLTFLDLSKCQ-LEQISWGV---FDTLHRLQLLNMSH 506 (606)
T ss_dssp --------TTTTTCTTCCEEECTTCE-EGGGE--ECSCCTTCTTCCEEECTTSC-CCEECTTT---TTTCTTCCEEECCS
T ss_pred --------hhhcCCCCCCEEECCCCc-CCCcc--hHHhhccCCCCCEEECCCCc-CCccChhh---hcccccCCEEECCC
Confidence 112355667777776653 222 1 12334556677777777753 44444442 46677777777777
Q ss_pred CCCcceeecccCCCCCccccccchhhhcccccccccCceecccCcccccccCCCcccccc-cccEEEEcccc
Q 000128 758 CASVEEIIGETSSNGNICVEEEEDEEARRRFVFPRLTWLNLSLLPRLKSFCPGVDISEWP-LLKSLGVFGCD 828 (2123)
Q Consensus 758 C~~l~~i~~~~~~~g~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~l~~~~~~~~~~-~L~~L~i~~C~ 828 (2123)
|. ++.+. ......+++|+.|+|+++. ++.++... ..++ +|+.|++++++
T Consensus 507 N~-l~~~~------------------~~~~~~l~~L~~L~l~~N~-l~~~p~~~--~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 507 NN-LLFLD------------------SSHYNQLYSLSTLDCSFNR-IETSKGIL--QHFPKSLAFFNLTNNS 556 (606)
T ss_dssp SC-CSCEE------------------GGGTTTCTTCCEEECTTSC-CCCEESCG--GGSCTTCCEEECCSCC
T ss_pred Cc-CCCcC------------------HHHccCCCcCCEEECCCCc-CcccCHhH--hhhcccCcEEEccCCC
Confidence 63 33221 0112346677777777774 66665542 2344 47777766644
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=1.1e-27 Score=323.97 Aligned_cols=176 Identities=17% Similarity=0.151 Sum_probs=141.6
Q ss_pred ceEEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCC-CcccCCCCCccEEEcCCC
Q 000128 130 PTAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSL-PSSIGCLISLRTLTLESC 208 (2123)
Q Consensus 130 l~~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~l-p~~i~~L~~Lr~L~L~~~ 208 (2123)
-++++..+..+..+|..+ .+++++|++++|.+.+ ++...|.++++|++|++++|.+..+ |.+|+++++|++|++++|
T Consensus 14 ~~~~~c~~~~l~~iP~~l-~~~l~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTL-PNSTECLEFSFNVLPT-IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp TTEEECTTSCCSSCCTTS-CTTCCEEECTTCCCSE-ECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CceEECCCCCcccCcCCC-CCcCcEEEccCCccCc-CChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence 346788888888888766 3578999999999874 4444458999999999999999865 778999999999999999
Q ss_pred CCC--CCccccCCCCCcEEEccCCCCccc-ccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccccccc
Q 000128 209 LLG--DVATIGDLKKLEILSLRHSDVEEL-PGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIE 285 (2123)
Q Consensus 209 ~l~--~p~~i~~L~~L~~L~L~~n~l~~l-P~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~ 285 (2123)
.++ .|..++++++|++|++++|+++.+ |..++++++|++|++++|. +..++...+..+++|++|++++|.+.+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~--- 167 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHY--- 167 (606)
T ss_dssp CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCE---
T ss_pred cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccc---
Confidence 988 567899999999999999999987 6778999999999999998 666532225669999999999998873
Q ss_pred cccccChhhhCCCCCCC--EEEEecCCCCCCC
Q 000128 286 GQSNASLVELKQLSRLT--TLEVHIPDAQVMP 315 (2123)
Q Consensus 286 ~~~~~~~~~l~~L~~L~--~L~l~~~~~~~~~ 315 (2123)
..+..++.+++|+ .|+++.|.+..++
T Consensus 168 ----~~~~~~~~l~~L~~l~L~l~~n~l~~~~ 195 (606)
T 3t6q_A 168 ----LSKEDMSSLQQATNLSLNLNGNDIAGIE 195 (606)
T ss_dssp ----ECHHHHHTTTTCCSEEEECTTCCCCEEC
T ss_pred ----cChhhhhhhcccceeEEecCCCccCccC
Confidence 2366788888888 7777777665443
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=1.3e-27 Score=323.06 Aligned_cols=516 Identities=15% Similarity=0.119 Sum_probs=353.2
Q ss_pred CCCceEEEccCCCCccCCC-CC-CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCC-CcccCCCCCccEE
Q 000128 127 HKDPTAISIPFRGIYEFPE-RL-ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSL-PSSIGCLISLRTL 203 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp~-~~-~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~l-p~~i~~L~~Lr~L 203 (2123)
+..+++|++++|.+..+++ .+ ++++|++|++++|.+.+..|.. |.++++|++|++++|.++.+ |..|+++++|++|
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDT-FQSQHRLDTLVLTANPLIFMAETALSGPKALKHL 110 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTT-TTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEE
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhh-ccCccccCeeeCCCCcccccChhhhcccccccEe
Confidence 5789999999999997754 44 8999999999999988544544 58999999999999999865 7789999999999
Q ss_pred EcCCCCCCC--CccccCCCCCcEEEccCCCCcccc-cccCCCCCccEEeccCCCCCcccChhhhCCCCCCC--EEEccCc
Q 000128 204 TLESCLLGD--VATIGDLKKLEILSLRHSDVEELP-GEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLE--ELYMGNS 278 (2123)
Q Consensus 204 ~L~~~~l~~--p~~i~~L~~L~~L~L~~n~l~~lP-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~--~L~l~~n 278 (2123)
++++|.++. +..++++++|++|++++|.+..++ ..+..+++|++|++++|. +..+++..++.+++|+ +|++++|
T Consensus 111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp ECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTTTTCCSEEEECTTC
T ss_pred eccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhhhhcccceeEEecCCC
Confidence 999999993 588999999999999999999763 344559999999999998 7788777799999999 8999999
Q ss_pred ccccccccccccChhhhCCCCCCCEEEEecCCCCCCChhh-hccccceeeeccCCccCCCCCcccceeeecccccCcccc
Q 000128 279 FTEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQVMPQDL-LSVELERYRICIGDVWSWSGEHETSRRLKLSALNKCIYL 357 (2123)
Q Consensus 279 ~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 357 (2123)
.+.+.. +.. ....+|+.|+++.+. .++... ...++....+..+. ...+.... +
T Consensus 190 ~l~~~~-------~~~-~~~~~L~~L~l~~~~--~~~~~~~~l~~~~l~~l~~~~-------~~~~~~~~---------i 243 (606)
T 3t6q_A 190 DIAGIE-------PGA-FDSAVFQSLNFGGTQ--NLLVIFKGLKNSTIQSLWLGT-------FEDMDDED---------I 243 (606)
T ss_dssp CCCEEC-------TTT-TTTCEEEEEECTTCS--CHHHHHHHTTTCEEEEEECCC-------CTTSCCCC---------C
T ss_pred ccCccC-------hhH-hhhccccccccCCch--hHHHHhhhccccchhheechh-------hccccccc---------c
Confidence 887322 222 334678999988765 222211 11222111111110 01111111 1
Q ss_pred chhHHHhc--cCCcEEecccccCccccccccCCCCCCCCccEEEeeccCCccEeeccccccCCCcCcccceeeccccccc
Q 000128 358 GYGMQMLL--KGIEDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLFLHNLMRL 435 (2123)
Q Consensus 358 p~~i~~~l--~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~f~~L~~L~l~~~~~l 435 (2123)
+......+ .+|+.|+++++... ...+. .++.+++|++|++.+|. +..++. ....+++|++|++.+.. +
T Consensus 244 ~~~~~~~l~~~~L~~L~l~~n~l~-~~~~~--~~~~l~~L~~L~l~~n~-l~~lp~-----~l~~l~~L~~L~l~~n~-l 313 (606)
T 3t6q_A 244 SPAVFEGLCEMSVESINLQKHYFF-NISSN--TFHCFSGLQELDLTATH-LSELPS-----GLVGLSTLKKLVLSANK-F 313 (606)
T ss_dssp CGGGGGGGGGSEEEEEECTTCCCS-SCCTT--TTTTCTTCSEEECTTSC-CSCCCS-----SCCSCTTCCEEECTTCC-C
T ss_pred ChhHhchhhcCceeEEEeecCccC-ccCHH--HhccccCCCEEeccCCc-cCCCCh-----hhcccccCCEEECccCC-c
Confidence 11111111 26888899886543 33222 25788999999999884 334443 23567899999998753 3
Q ss_pred hhhhcCCCCcccCCCccEEEEecCCCCCCCCChhhhhhcCCCcEEEecccccchhhhccCCcccccccccccccccceee
Q 000128 436 EMVYRGQLTEHSFSKLRIIKVCQCDNLKHLFSFPMARNLLQLQKLKVSFCESLKLIVGKESSETHNVHEIINFTQLHSLT 515 (2123)
Q Consensus 436 ~~~~~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~fp~L~~L~ 515 (2123)
..+. +...+.+++|++|++.+|.....+|+ ..+..+++|++|+++++.. ..+.. .......+++|+.|+
T Consensus 314 ~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l-~~~~~-------~~~~~~~l~~L~~L~ 382 (606)
T 3t6q_A 314 ENLC--QISASNFPSLTHLSIKGNTKRLELGT-GCLENLENLRELDLSHDDI-ETSDC-------CNLQLRNLSHLQSLN 382 (606)
T ss_dssp SBGG--GGCGGGCTTCSEEECCSCSSCCBCCS-STTTTCTTCCEEECCSSCC-CEEEE-------STTTTTTCTTCCEEE
T ss_pred CcCc--hhhhhccCcCCEEECCCCCcccccch-hhhhccCcCCEEECCCCcc-ccccC-------cchhcccCCCCCEEE
Confidence 3321 22346789999999999765546655 3468899999999998753 22210 011234567788888
Q ss_pred cccCccccccccccCCCCCCCccccccccccceecccCcccccccccccCCCccceeecccccccccccccccccccccc
Q 000128 516 LQCLPQLTSSGFDLERPLLSPTISATTLAFEEVIAEDDSDESLFNNKVIFPNLEKLKLSSINIEKIWHDQYPLMLNSCSQ 595 (2123)
Q Consensus 516 l~~~~~L~~l~~~~~~~~~~p~l~~~~~~~~~~i~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~~l~ 595 (2123)
++++. +..+ . | .....+++|++|++++|.++....... +..++
T Consensus 383 l~~n~-l~~~--~-------~-----------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~~l~ 425 (606)
T 3t6q_A 383 LSYNE-PLSL--K-------T-----------------------EAFKECPQLELLDLAFTRLKVKDAQSP----FQNLH 425 (606)
T ss_dssp CCSCS-CEEE--C-------T-----------------------TTTTTCTTCSEEECTTCCEECCTTCCT----TTTCT
T ss_pred CCCCc-CCcC--C-------H-----------------------HHhcCCccCCeEECCCCcCCCcccchh----hhCcc
Confidence 77653 2211 0 0 011247899999999998876643221 23589
Q ss_pred CcceEEEecCCCcccccchhhHhhhhccceEEEeecCCcceeeccCccccccccCCcceeeeeccCCCcccccccCCccc
Q 000128 596 NLTNLTVETCSRLKFLFSYSMVDSLVRLQQLEIRKCESMEAVIDTTDIEINSVEFPSLHHLRIVDCPNLRSFISVNSSEE 675 (2123)
Q Consensus 596 ~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~i~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~ 675 (2123)
+|+.|++++|. +...++. .+..+++|++|++++|.--...+.. ......+++|+.|++++|.- ..++.
T Consensus 426 ~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~~~l~~L~~L~Ls~n~l-~~~~~------ 493 (606)
T 3t6q_A 426 LLKVLNLSHSL-LDISSEQ-LFDGLPALQHLNLQGNHFPKGNIQK---TNSLQTLGRLEILVLSFCDL-SSIDQ------ 493 (606)
T ss_dssp TCCEEECTTCC-CBTTCTT-TTTTCTTCCEEECTTCBCGGGEECS---SCGGGGCTTCCEEECTTSCC-CEECT------
T ss_pred cCCEEECCCCc-cCCcCHH-HHhCCCCCCEEECCCCCCCcccccc---chhhccCCCccEEECCCCcc-CccCh------
Confidence 99999999965 4444333 3566899999999998632211111 12345889999999998843 33311
Q ss_pred ccccCCCCCccccccccCccceeeeccccCcchhccccCCCCccCCccEEEeccCCcccccCCCcHHHHHhcCCccEEEE
Q 000128 676 KILHTDTQPLFDEKLVLPRLEVLSIDMMDNMRKIWHHQLALNSFSKLKALEVTNCGKLANIFPANIIMRRRLDRLEYLKV 755 (2123)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~Le~L~i~~c~~l~~i~~~~~~~~~l~~L~~L~i~~C~~L~~~~p~~~~~~~~l~~L~~L~i 755 (2123)
.....+++|+.|+++++ +++.+ .+..+..+++| .|+++++. +..+.|. .++.+++|++|++
T Consensus 494 -----------~~~~~l~~L~~L~Ls~N-~l~~~--~~~~l~~l~~L-~L~L~~N~-l~~~~~~---~~~~l~~L~~L~l 554 (606)
T 3t6q_A 494 -----------HAFTSLKMMNHVDLSHN-RLTSS--SIEALSHLKGI-YLNLASNH-ISIILPS---LLPILSQQRTINL 554 (606)
T ss_dssp -----------TTTTTCTTCCEEECCSS-CCCGG--GGGGGTTCCSC-EEECCSSC-CCCCCGG---GHHHHHTSSEEEC
T ss_pred -----------hhhccccCCCEEECCCC-ccCcC--ChhHhCccccc-EEECcCCc-ccccCHh---hcccCCCCCEEeC
Confidence 12347899999999997 45554 23456677888 99999964 5565554 4688999999999
Q ss_pred ecCC
Q 000128 756 DGCA 759 (2123)
Q Consensus 756 ~~C~ 759 (2123)
++++
T Consensus 555 ~~N~ 558 (606)
T 3t6q_A 555 RQNP 558 (606)
T ss_dssp TTCC
T ss_pred CCCC
Confidence 9976
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=3.6e-28 Score=328.69 Aligned_cols=512 Identities=19% Similarity=0.205 Sum_probs=328.3
Q ss_pred CCCceEEEccCCCCccCCC-CC-CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCC-CcccCCCCCccEE
Q 000128 127 HKDPTAISIPFRGIYEFPE-RL-ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSL-PSSIGCLISLRTL 203 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp~-~~-~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~l-p~~i~~L~~Lr~L 203 (2123)
++++++|++++|.+..++. .+ ++++|++|++++|.+.+ +++..|.++++|++|++++|.++.+ |.+|+++++|++|
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 109 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 109 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccc-cCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEE
Confidence 5789999999999997766 33 89999999999999884 5444569999999999999999977 8899999999999
Q ss_pred EcCCCCCC-CC-ccccCCCCCcEEEccCCCCc--ccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCC----EEEc
Q 000128 204 TLESCLLG-DV-ATIGDLKKLEILSLRHSDVE--ELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLE----ELYM 275 (2123)
Q Consensus 204 ~L~~~~l~-~p-~~i~~L~~L~~L~L~~n~l~--~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~----~L~l 275 (2123)
++++|.++ .+ ..++++.+|++|++++|.+. .+|..++++++|++|++++|. +..+++..++.+++|+ +|++
T Consensus 110 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~~l~~L~l 188 (606)
T 3vq2_A 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLRENPQVNLSLDM 188 (606)
T ss_dssp ECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHHHCTTCCCEEEC
T ss_pred EccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhhhhhhccccccceeec
Confidence 99999998 43 78999999999999999998 589999999999999999998 7777665577666655 8999
Q ss_pred cCcccccccccccccChhhhCCCCCCCEEEEecCCCCC--CChhh-hccccceeeeccCCccCCCCCcccceeeeccccc
Q 000128 276 GNSFTEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQV--MPQDL-LSVELERYRICIGDVWSWSGEHETSRRLKLSALN 352 (2123)
Q Consensus 276 ~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~--~~~~~-~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~ 352 (2123)
++|.+.... ...+ ...+|+.|+++.|.+.. ++..+ ...+++.+.+..+.... ...+..+.-
T Consensus 189 ~~n~l~~~~-------~~~~-~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~----~~~l~~~~~---- 252 (606)
T 3vq2_A 189 SLNPIDFIQ-------DQAF-QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD----ERNLEIFEP---- 252 (606)
T ss_dssp TTCCCCEEC-------TTTT-TTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTT----SCCCSCCCG----
T ss_pred cCCCcceeC-------cccc-cCceeeeeeccCCccchhHHHHHhcccccccccccccccccc----CCcccccCh----
Confidence 999887321 2223 33489999999987652 12222 23344444333221100 000000000
Q ss_pred CccccchhHHHhccCCcEEecccccCccccccccCCCCCCCCccEEEeeccCCccEeeccccccCCCcCcccceeecccc
Q 000128 353 KCIYLGYGMQMLLKGIEDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLFLHNL 432 (2123)
Q Consensus 353 ~~~~~p~~i~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~f~~L~~L~l~~~ 432 (2123)
..+..+.. -.++.+.+...+......+.+ ..+++|+.|++.++.. ..++
T Consensus 253 ---~~~~~l~~--l~l~~l~l~~~~~~~~~~~~~---~~l~~L~~L~l~~~~~-~~l~---------------------- 301 (606)
T 3vq2_A 253 ---SIMEGLCD--VTIDEFRLTYTNDFSDDIVKF---HCLANVSAMSLAGVSI-KYLE---------------------- 301 (606)
T ss_dssp ---GGGTTGGG--SEEEEEEECCCTTCCGGGGSC---GGGTTCSEEEEESCCC-CCCC----------------------
T ss_pred ---HHhhhhhh--ccHhheecccccccccccccc---ccCCCCCEEEecCccc-hhhh----------------------
Confidence 00111111 135556664444444444443 7778888888877631 1111
Q ss_pred ccchhhhcCCCCcccCCCccEEEEecCCCCCCCCChhhhhhcCCCcEEEecccccchhhhccCCcccccccccccccccc
Q 000128 433 MRLEMVYRGQLTEHSFSKLRIIKVCQCDNLKHLFSFPMARNLLQLQKLKVSFCESLKLIVGKESSETHNVHEIINFTQLH 512 (2123)
Q Consensus 433 ~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~fp~L~ 512 (2123)
....+++|++|++.+|. ++.+|. + .+++|++|+++++..+..+. ...+++|+
T Consensus 302 -----------~l~~~~~L~~L~l~~n~-l~~lp~---~-~l~~L~~L~l~~n~~~~~~~------------~~~l~~L~ 353 (606)
T 3vq2_A 302 -----------DVPKHFKWQSLSIIRCQ-LKQFPT---L-DLPFLKSLTLTMNKGSISFK------------KVALPSLS 353 (606)
T ss_dssp -----------CCCTTCCCSEEEEESCC-CSSCCC---C-CCSSCCEEEEESCSSCEECC------------CCCCTTCC
T ss_pred -----------hccccccCCEEEccccc-Cccccc---C-CCCccceeeccCCcCccchh------------hccCCCCC
Confidence 11235666777777654 366664 2 66777777777764433221 22456666
Q ss_pred eeecccCccccccccccCCCCCCCccccccccccceecccCcccccccccccCCCccceeeccccccccccccccccccc
Q 000128 513 SLTLQCLPQLTSSGFDLERPLLSPTISATTLAFEEVIAEDDSDESLFNNKVIFPNLEKLKLSSINIEKIWHDQYPLMLNS 592 (2123)
Q Consensus 513 ~L~l~~~~~L~~l~~~~~~~~~~p~l~~~~~~~~~~i~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~ 592 (2123)
.|+++++. ++.+. . .......+++|++|++++|.++.+. .. +.
T Consensus 354 ~L~ls~n~-l~~~~----------~--------------------~~~~~~~~~~L~~L~L~~n~l~~~~-~~-----~~ 396 (606)
T 3vq2_A 354 YLDLSRNA-LSFSG----------C--------------------CSYSDLGTNSLRHLDLSFNGAIIMS-AN-----FM 396 (606)
T ss_dssp EEECCSSC-EEEEE----------E--------------------CCHHHHCCSCCCEEECCSCSEEEEC-CC-----CT
T ss_pred EEECcCCc-cCCCc----------c--------------------hhhhhccCCcccEeECCCCccccch-hh-----cc
Confidence 66666542 11110 0 0001123677788888877776654 11 23
Q ss_pred cccCcceEEEecCCCcccccchhhHhhhhccceEEEeecCCcceeeccCccccccccCCcceeeeeccCCCccc-ccccC
Q 000128 593 CSQNLTNLTVETCSRLKFLFSYSMVDSLVRLQQLEIRKCESMEAVIDTTDIEINSVEFPSLHHLRIVDCPNLRS-FISVN 671 (2123)
Q Consensus 593 ~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~i~~~~~~~~~~~~l~~L~~L~l~~c~~L~~-~~~~~ 671 (2123)
.+++|+.|++++| .+...++...+..+++|+.|++++|. +... .+..+..+++|++|++++|.--.. ++
T Consensus 397 ~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~--- 466 (606)
T 3vq2_A 397 GLEELQHLDFQHS-TLKRVTEFSAFLSLEKLLYLDISYTN-TKID-----FDGIFLGLTSLNTLKMAGNSFKDNTLS--- 466 (606)
T ss_dssp TCTTCCEEECTTS-EEESTTTTTTTTTCTTCCEEECTTSC-CEEC-----CTTTTTTCTTCCEEECTTCEEGGGEEC---
T ss_pred CCCCCCeeECCCC-ccCCccChhhhhccccCCEEECcCCC-CCcc-----chhhhcCCCCCCEEECCCCcCCCcchH---
Confidence 4777888888774 34444443445667788888887766 2222 112344678888888877743221 21
Q ss_pred CcccccccCCCCCccccccccCccceeeeccccCcchhccccCCCCccCCccEEEeccCCcccccCCCcHHHHHhcCCcc
Q 000128 672 SSEEKILHTDTQPLFDEKLVLPRLEVLSIDMMDNMRKIWHHQLALNSFSKLKALEVTNCGKLANIFPANIIMRRRLDRLE 751 (2123)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~Le~L~i~~c~~l~~i~~~~~~~~~l~~L~~L~i~~C~~L~~~~p~~~~~~~~l~~L~ 751 (2123)
.....+++|+.|+++++ +++.+ .+..+..+++|+.|++++|. +..+.|.. ++.+++|+
T Consensus 467 ---------------~~~~~l~~L~~L~Ls~n-~l~~~--~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~---~~~l~~L~ 524 (606)
T 3vq2_A 467 ---------------NVFANTTNLTFLDLSKC-QLEQI--SWGVFDTLHRLQLLNMSHNN-LLFLDSSH---YNQLYSLS 524 (606)
T ss_dssp ---------------SCCTTCTTCCEEECTTS-CCCEE--CTTTTTTCTTCCEEECCSSC-CSCEEGGG---TTTCTTCC
T ss_pred ---------------HhhccCCCCCEEECCCC-cCCcc--ChhhhcccccCCEEECCCCc-CCCcCHHH---ccCCCcCC
Confidence 12336778888888887 45444 23345667888888888874 55544543 57788889
Q ss_pred EEEEecCCCcceeecccCCCCCccccccchhhhccccccc-ccCceecccCccc
Q 000128 752 YLKVDGCASVEEIIGETSSNGNICVEEEEDEEARRRFVFP-RLTWLNLSLLPRL 804 (2123)
Q Consensus 752 ~L~i~~C~~l~~i~~~~~~~g~~~~~~~~~~~~~~~~~~p-~L~~L~L~~~~~L 804 (2123)
+|++++|. ++.++. ....+| +|+.|+++++|-.
T Consensus 525 ~L~l~~N~-l~~~p~-------------------~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 525 TLDCSFNR-IETSKG-------------------ILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp EEECTTSC-CCCEES-------------------CGGGSCTTCCEEECCSCCCC
T ss_pred EEECCCCc-CcccCH-------------------hHhhhcccCcEEEccCCCcc
Confidence 99998875 555531 123555 4888888888643
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=5.3e-26 Score=317.23 Aligned_cols=516 Identities=16% Similarity=0.084 Sum_probs=249.2
Q ss_pred EEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCC-CCCC-CcccCCCCCccEEEcCCCC
Q 000128 132 AISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFR-FPSL-PSSIGCLISLRTLTLESCL 209 (2123)
Q Consensus 132 ~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~-i~~l-p~~i~~L~~Lr~L~L~~~~ 209 (2123)
..+.+++++..+|. -.+++++|++++|.+.+..|.. |.++++|++|++++|. +..+ |.+|+++++|++|+|++|.
T Consensus 8 ~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~-~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASS-FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSS-CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred EEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhH-CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 44555555556655 3456666666666655333333 3566666666666663 2344 4556666666666666666
Q ss_pred CC--CCccccCCCCCcEEEccCCCCcc-cccc--cCCCCCccEEeccCCCCCccc-ChhhhCCCCCCCEEEccCcccccc
Q 000128 210 LG--DVATIGDLKKLEILSLRHSDVEE-LPGE--IGQLTRLKLLDLSNCMKLKVI-RPNVISSLSRLEELYMGNSFTEWE 283 (2123)
Q Consensus 210 l~--~p~~i~~L~~L~~L~L~~n~l~~-lP~~--i~~L~~L~~L~l~~~~~l~~l-p~~~i~~L~~L~~L~l~~n~~~~~ 283 (2123)
++ .|..|+++.+|++|++++|++.. +|.. ++++++|++|++++|. +..+ +...++++++|++|++++|.+.+.
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCee
Confidence 65 35566666666666666666553 3433 5666666666666665 3333 222356666666666666655421
Q ss_pred cccccccChhhhCCC--CCCCEEEEecCCCCCC-Chhh-------hccccceeeeccCCc----cCC---CCCcccceee
Q 000128 284 IEGQSNASLVELKQL--SRLTTLEVHIPDAQVM-PQDL-------LSVELERYRICIGDV----WSW---SGEHETSRRL 346 (2123)
Q Consensus 284 ~~~~~~~~~~~l~~L--~~L~~L~l~~~~~~~~-~~~~-------~~~~L~~l~i~~~~~----~~~---~~~~~~L~~L 346 (2123)
.+..++.+ ++|+.|+++.|.+... +... ....|+.+.+..+.. ... ......+..+
T Consensus 164 -------~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L 236 (844)
T 3j0a_A 164 -------CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSL 236 (844)
T ss_dssp -------CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEE
T ss_pred -------CHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccce
Confidence 12333333 5566666665554332 1110 001133333322110 000 0001122333
Q ss_pred ecccccCc--------ccc-chhHHH-hccCCcEEecccccCccccccccCCCCCCCCccEEEeeccCCccEeecccccc
Q 000128 347 KLSALNKC--------IYL-GYGMQM-LLKGIEDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNVCEILYIVNLVGWE 416 (2123)
Q Consensus 347 ~L~~~~~~--------~~~-p~~i~~-~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~~~~~i~~~~~~~ 416 (2123)
.+...... ... +..+.. ..++|+.|+++++... ...+. .++.+++|+.|++.+|.. ..+.. .
T Consensus 237 ~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~-~~~~~--~~~~l~~L~~L~L~~n~i-~~~~~----~ 308 (844)
T 3j0a_A 237 ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSR--VFETLKDLKVLNLAYNKI-NKIAD----E 308 (844)
T ss_dssp ECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCC-EECSC--CSSSCCCCCEEEEESCCC-CEECT----T
T ss_pred ecccccccccccccccCCCChhhhhccccCCccEEECCCCccc-ccChh--hhhcCCCCCEEECCCCcC-CCCCh----H
Confidence 32210000 000 011111 1245666666654332 22221 235566666666666532 22211 1
Q ss_pred CCCcCcccceeeccccccchhhhcCCCCcccCCCccEEEEecCCCCCCCCChhhhhhcCCCcEEEecccccchhhhccCC
Q 000128 417 HCNAFPLLESLFLHNLMRLEMVYRGQLTEHSFSKLRIIKVCQCDNLKHLFSFPMARNLLQLQKLKVSFCESLKLIVGKES 496 (2123)
Q Consensus 417 ~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~ 496 (2123)
....+++|++|++++.. +..+. +...+.+++|++|++.++ .+..+++ ..+..+++|++|+++++. ++.+
T Consensus 309 ~~~~l~~L~~L~Ls~N~-l~~~~--~~~~~~l~~L~~L~L~~N-~i~~~~~-~~~~~l~~L~~L~Ls~N~-l~~i----- 377 (844)
T 3j0a_A 309 AFYGLDNLQVLNLSYNL-LGELY--SSNFYGLPKVAYIDLQKN-HIAIIQD-QTFKFLEKLQTLDLRDNA-LTTI----- 377 (844)
T ss_dssp TTTTCSSCCEEEEESCC-CSCCC--SCSCSSCTTCCEEECCSC-CCCCCCS-SCSCSCCCCCEEEEETCC-SCCC-----
T ss_pred HhcCCCCCCEEECCCCC-CCccC--HHHhcCCCCCCEEECCCC-CCCccCh-hhhcCCCCCCEEECCCCC-CCcc-----
Confidence 22345555666555432 22211 112234555666666553 4444443 234455566666665542 2111
Q ss_pred cccccccccccccccceeecccCccccccccccCCCCCCCccccccccccceecccCcccccccccccCCCccceeeccc
Q 000128 497 SETHNVHEIINFTQLHSLTLQCLPQLTSSGFDLERPLLSPTISATTLAFEEVIAEDDSDESLFNNKVIFPNLEKLKLSSI 576 (2123)
Q Consensus 497 ~~~~~~~~~~~fp~L~~L~l~~~~~L~~l~~~~~~~~~~p~l~~~~~~~~~~i~~~~~~~~~~~~~~~l~~L~~L~L~~~ 576 (2123)
..+++|+.|.+.++. ++.+ | ....+++.|++++|
T Consensus 378 ---------~~~~~L~~L~l~~N~-l~~l----------~--------------------------~~~~~l~~L~ls~N 411 (844)
T 3j0a_A 378 ---------HFIPSIPDIFLSGNK-LVTL----------P--------------------------KINLTANLIHLSEN 411 (844)
T ss_dssp ---------SSCCSCSEEEEESCC-CCCC----------C--------------------------CCCTTCCEEECCSC
T ss_pred ---------cCCCCcchhccCCCC-cccc----------c--------------------------ccccccceeecccC
Confidence 114445555444431 1111 0 11346677777777
Q ss_pred cccccccccccccccccccCcceEEEecCCCcccccchhhHhhhhccceEEEeecCCcceeeccCccccccccCCcceee
Q 000128 577 NIEKIWHDQYPLMLNSCSQNLTNLTVETCSRLKFLFSYSMVDSLVRLQQLEIRKCESMEAVIDTTDIEINSVEFPSLHHL 656 (2123)
Q Consensus 577 ~l~~i~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~i~~~~~~~~~~~~l~~L~~L 656 (2123)
+++.+.... ....+++|+.|+++++ .+..+++......+++|+.|+++++. +..+...+.....+..+++|+.|
T Consensus 412 ~l~~l~~~~----~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~l~~L~~L 485 (844)
T 3j0a_A 412 RLENLDILY----FLLRVPHLQILILNQN-RFSSCSGDQTPSENPSLEQLFLGENM-LQLAWETELCWDVFEGLSHLQVL 485 (844)
T ss_dssp CCCSSTTHH----HHTTCTTCCEEEEESC-CCCCCCSSSSSCSCTTCCBCEEESCC-CSSSCCSCCCSSCSSCBCCEECC
T ss_pred ccccCchhh----hhhcCCccceeeCCCC-cccccccccccccCCccccccCCCCc-cccccccccchhhhcCcccccEE
Confidence 766653211 1224677778887774 34443333233346777888887754 33221111122234567777777
Q ss_pred eeccCCCcccccccCCcccccccCCCCCccccccccCccceeeeccccCcchhccccCCCCccCCccEEEeccCCccccc
Q 000128 657 RIVDCPNLRSFISVNSSEEKILHTDTQPLFDEKLVLPRLEVLSIDMMDNMRKIWHHQLALNSFSKLKALEVTNCGKLANI 736 (2123)
Q Consensus 657 ~l~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Le~L~i~~c~~l~~i~~~~~~~~~l~~L~~L~i~~C~~L~~~ 736 (2123)
+++++ ++..++. .....+++|+.|+++++ +++.+... ... ++|+.|+++++ .+..+
T Consensus 486 ~Ls~N-~l~~~~~-----------------~~~~~l~~L~~L~Ls~N-~l~~l~~~--~~~--~~L~~L~Ls~N-~l~~~ 541 (844)
T 3j0a_A 486 YLNHN-YLNSLPP-----------------GVFSHLTALRGLSLNSN-RLTVLSHN--DLP--ANLEILDISRN-QLLAP 541 (844)
T ss_dssp CCCHH-HHTTCCT-----------------TSSSSCCSCSEEEEESC-CCSSCCCC--CCC--SCCCEEEEEEE-CCCCC
T ss_pred ECCCC-cccccCh-----------------hHccchhhhheeECCCC-CCCccChh--hhh--ccccEEECCCC-cCCCC
Confidence 77666 3433321 11236778888888875 56655321 222 67888888884 45554
Q ss_pred CCCcHHHHHhcCCccEEEEecCC
Q 000128 737 FPANIIMRRRLDRLEYLKVDGCA 759 (2123)
Q Consensus 737 ~p~~~~~~~~l~~L~~L~i~~C~ 759 (2123)
.|. .+.+|+.|++.+.+
T Consensus 542 ~~~------~~~~L~~l~l~~Np 558 (844)
T 3j0a_A 542 NPD------VFVSLSVLDITHNK 558 (844)
T ss_dssp CSC------CCSSCCEEEEEEEC
T ss_pred Chh------HhCCcCEEEecCCC
Confidence 443 24578888887744
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=1.5e-25 Score=301.03 Aligned_cols=158 Identities=20% Similarity=0.205 Sum_probs=101.5
Q ss_pred cCCCccceeeccccccccccccccccccccccCcceEEEecCCCcccccchhhHhhhhccceEEEeecCCcceeeccCcc
Q 000128 564 IFPNLEKLKLSSINIEKIWHDQYPLMLNSCSQNLTNLTVETCSRLKFLFSYSMVDSLVRLQQLEIRKCESMEAVIDTTDI 643 (2123)
Q Consensus 564 ~l~~L~~L~L~~~~l~~i~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~i~~~~~~ 643 (2123)
.+++|++|++++|.+..+... + ..+++|+.|++++|. +...++...+..+++|+.|++++|. +..+ .
T Consensus 371 ~~~~L~~L~l~~n~l~~~~~~-~-----~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-----~ 437 (570)
T 2z63_A 371 GTTSLKYLDLSFNGVITMSSN-F-----LGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTH-TRVA-----F 437 (570)
T ss_dssp TCSCCCEEECCSCSEEEEEEE-E-----ETCTTCCEEECTTSE-EESCTTSCTTTTCTTCCEEECTTSC-CEEC-----C
T ss_pred ccCccCEEECCCCcccccccc-c-----cccCCCCEEEccCCc-cccccchhhhhcCCCCCEEeCcCCc-cccc-----c
Confidence 367778888888777665433 2 347788888887743 4444343345567888888887775 2222 1
Q ss_pred ccccccCCcceeeeeccCCCc-ccccccCCcccccccCCCCCccccccccCccceeeeccccCcchhccccCCCCccCCc
Q 000128 644 EINSVEFPSLHHLRIVDCPNL-RSFISVNSSEEKILHTDTQPLFDEKLVLPRLEVLSIDMMDNMRKIWHHQLALNSFSKL 722 (2123)
Q Consensus 644 ~~~~~~l~~L~~L~l~~c~~L-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Le~L~i~~c~~l~~i~~~~~~~~~l~~L 722 (2123)
+..+..+++|++|++.+|.-. ..+| .....+++|+.|++++| +++.+ .+..+..+++|
T Consensus 438 ~~~~~~l~~L~~L~l~~n~l~~~~~p------------------~~~~~l~~L~~L~l~~n-~l~~~--~~~~~~~l~~L 496 (570)
T 2z63_A 438 NGIFNGLSSLEVLKMAGNSFQENFLP------------------DIFTELRNLTFLDLSQC-QLEQL--SPTAFNSLSSL 496 (570)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEEC------------------SCCTTCTTCCEEECTTS-CCCEE--CTTTTTTCTTC
T ss_pred hhhhhcCCcCcEEECcCCcCccccch------------------hhhhcccCCCEEECCCC-ccccC--ChhhhhcccCC
Confidence 123446788888888777532 1222 12336788888888887 34444 13345667889
Q ss_pred cEEEeccCCcccccCCCcHHHHHhcCCccEEEEecCC
Q 000128 723 KALEVTNCGKLANIFPANIIMRRRLDRLEYLKVDGCA 759 (2123)
Q Consensus 723 ~~L~i~~C~~L~~~~p~~~~~~~~l~~L~~L~i~~C~ 759 (2123)
+.|++++| .+..+.|. .+..+++|++|++++++
T Consensus 497 ~~L~l~~n-~l~~~~~~---~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 497 QVLNMASN-QLKSVPDG---IFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CEEECCSS-CCSCCCTT---TTTTCTTCCEEECCSSC
T ss_pred CEEeCCCC-cCCCCCHH---HhhcccCCcEEEecCCc
Confidence 99999886 46665444 35788899999998865
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=1.8e-25 Score=300.19 Aligned_cols=501 Identities=17% Similarity=0.165 Sum_probs=307.5
Q ss_pred eEEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCC-cccCCCCCccEEEcCCCC
Q 000128 131 TAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLP-SSIGCLISLRTLTLESCL 209 (2123)
Q Consensus 131 ~~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp-~~i~~L~~Lr~L~L~~~~ 209 (2123)
+.++.++.++..+|..+ .+++++|++++|.+.+ ++...|.++++|++|++++|.++.++ ..|+++++|++|++++|.
T Consensus 10 ~~~~c~~~~l~~ip~~l-~~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 87 (570)
T 2z63_A 10 ITYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (570)
T ss_dssp TEEECCSSCCSSCCSSS-CSSCCEEECCSCCCCE-ECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred cEEEeCCCCccccCCCc-cccccEEEccCCccCc-cChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc
Confidence 44556666666777654 3568888888887763 44444578888888888888888664 567888888888888888
Q ss_pred CC--CCccccCCCCCcEEEccCCCCccccc-ccCCCCCccEEeccCCCCCcc--cChhhhCCCCCCCEEEccCccccccc
Q 000128 210 LG--DVATIGDLKKLEILSLRHSDVEELPG-EIGQLTRLKLLDLSNCMKLKV--IRPNVISSLSRLEELYMGNSFTEWEI 284 (2123)
Q Consensus 210 l~--~p~~i~~L~~L~~L~L~~n~l~~lP~-~i~~L~~L~~L~l~~~~~l~~--lp~~~i~~L~~L~~L~l~~n~~~~~~ 284 (2123)
++ .+..|+++.+|++|++++|+++.+|. .++++++|++|++++|. +.. +|.. ++++++|++|++++|.+...
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~l~~n~l~~~- 164 (570)
T 2z63_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQSI- 164 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECTTSCCCEE-
T ss_pred CCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCc-cceecChhh-hcccCCCCEEeCcCCcccee-
Confidence 77 34678888888888888888887765 58888888888888887 443 5665 78888888888888877622
Q ss_pred ccccccChhhhCCCCCC----CEEEEecCCCCCCChhhhccccceeeeccCCccCCCCCcccceeeecccccC-ccccch
Q 000128 285 EGQSNASLVELKQLSRL----TTLEVHIPDAQVMPQDLLSVELERYRICIGDVWSWSGEHETSRRLKLSALNK-CIYLGY 359 (2123)
Q Consensus 285 ~~~~~~~~~~l~~L~~L----~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~p~ 359 (2123)
.+..++.+++| +.|+++.|.+..++...+. ...++.+++.+... ...++.
T Consensus 165 ------~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~-------------------~~~L~~L~l~~n~~~~~~~~~ 219 (570)
T 2z63_A 165 ------YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-------------------EIRLHKLTLRNNFDSLNVMKT 219 (570)
T ss_dssp ------CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT-------------------TCEEEEEEEESCCSCTTHHHH
T ss_pred ------cHHHccchhccchhhhhcccCCCCceecCHHHhc-------------------cCcceeEecccccccccchhh
Confidence 23444455555 6778877777655443311 01233343332111 111122
Q ss_pred hHHHhccCCcEEecccccCccccccccCCCCCCCCccEEEeeccCCccEeeccccccCCCcCcc-----cceeecccccc
Q 000128 360 GMQMLLKGIEDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPL-----LESLFLHNLMR 434 (2123)
Q Consensus 360 ~i~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~f~~-----L~~L~l~~~~~ 434 (2123)
++.. +++++.+.+..... ....++ ..+. ...|.. ++.+.+.+...
T Consensus 220 ~~~~-l~~l~~~~l~~~~~-----------~~~~~l-----------~~~~-------~~~~~~l~~l~l~~l~l~~~~~ 269 (570)
T 2z63_A 220 CIQG-LAGLEVHRLVLGEF-----------RNEGNL-----------EKFD-------KSALEGLCNLTIEEFRLAYLDY 269 (570)
T ss_dssp HHHT-TTTCEEEEEEEEEC-----------CCCSSC-----------EECC-------TTTTGGGGGSEEEEEEEEETTE
T ss_pred hhcC-ccccceeeeccccc-----------cCchhh-----------hhcc-------hhhhccccccchhhhhhhcchh
Confidence 2221 23333322211000 000000 0000 011111 22223322211
Q ss_pred chhhhcCCCCcccCCCccEEEEecCCCCCCCCChhhhhhcCCCcEEEecccccchhhhccCCccccccccccccccccee
Q 000128 435 LEMVYRGQLTEHSFSKLRIIKVCQCDNLKHLFSFPMARNLLQLQKLKVSFCESLKLIVGKESSETHNVHEIINFTQLHSL 514 (2123)
Q Consensus 435 l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~fp~L~~L 514 (2123)
+.... +...+.+++|++|++.++ .++.+|. .+..+ +|++|++++|. +..++. ..+++|+.|
T Consensus 270 ~~~~~--~~~~~~l~~L~~L~l~~~-~l~~l~~--~~~~~-~L~~L~l~~n~-~~~l~~------------~~l~~L~~L 330 (570)
T 2z63_A 270 YLDDI--IDLFNCLTNVSSFSLVSV-TIERVKD--FSYNF-GWQHLELVNCK-FGQFPT------------LKLKSLKRL 330 (570)
T ss_dssp EESCS--TTTTGGGTTCSEEEEESC-EECSCCB--CCSCC-CCSEEEEESCB-CSSCCB------------CBCSSCCEE
T ss_pred hhhhc--hhhhcCcCcccEEEecCc-cchhhhh--hhccC-CccEEeeccCc-ccccCc------------ccccccCEE
Confidence 11110 112345788888888885 5666765 45566 88999998874 223321 246778888
Q ss_pred ecccCccccccccccCCCCCCCccccccccccceecccCcccccccccccCCCccceeeccccccccc--cccccccccc
Q 000128 515 TLQCLPQLTSSGFDLERPLLSPTISATTLAFEEVIAEDDSDESLFNNKVIFPNLEKLKLSSINIEKIW--HDQYPLMLNS 592 (2123)
Q Consensus 515 ~l~~~~~L~~l~~~~~~~~~~p~l~~~~~~~~~~i~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~--~~~~~~~~~~ 592 (2123)
++.++.....+ ....+++|++|++++|+++.+. +.. +.
T Consensus 331 ~l~~n~~~~~~-----------------------------------~~~~~~~L~~L~l~~n~l~~~~~~~~~-----~~ 370 (570)
T 2z63_A 331 TFTSNKGGNAF-----------------------------------SEVDLPSLEFLDLSRNGLSFKGCCSQS-----DF 370 (570)
T ss_dssp EEESCBSCCBC-----------------------------------CCCBCTTCCEEECCSSCCBEEEEEEHH-----HH
T ss_pred eCcCCcccccc-----------------------------------ccccCCCCCEEeCcCCccCcccccccc-----cc
Confidence 87776422111 0024799999999999887653 111 23
Q ss_pred cccCcceEEEecCCCcccccchhhHhhhhccceEEEeecCCcceeeccCccccccccCCcceeeeeccCCCcccccccCC
Q 000128 593 CSQNLTNLTVETCSRLKFLFSYSMVDSLVRLQQLEIRKCESMEAVIDTTDIEINSVEFPSLHHLRIVDCPNLRSFISVNS 672 (2123)
Q Consensus 593 ~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~i~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~ 672 (2123)
.+++|+.|++++|. +..+++. +..+++|++|++++|. +..+.. ...+..+++|++|++++|......+
T Consensus 371 ~~~~L~~L~l~~n~-l~~~~~~--~~~l~~L~~L~l~~n~-l~~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~---- 438 (570)
T 2z63_A 371 GTTSLKYLDLSFNG-VITMSSN--FLGLEQLEHLDFQHSN-LKQMSE----FSVFLSLRNLIYLDISHTHTRVAFN---- 438 (570)
T ss_dssp TCSCCCEEECCSCS-EEEEEEE--EETCTTCCEEECTTSE-EESCTT----SCTTTTCTTCCEEECTTSCCEECCT----
T ss_pred ccCccCEEECCCCc-ccccccc--ccccCCCCEEEccCCc-cccccc----hhhhhcCCCCCEEeCcCCcccccch----
Confidence 58899999999964 5555443 5678999999999876 322211 1234588999999999886433332
Q ss_pred cccccccCCCCCccccccccCccceeeeccccCcc-hhccccCCCCccCCccEEEeccCCcccccCCCcHHHHHhcCCcc
Q 000128 673 SEEKILHTDTQPLFDEKLVLPRLEVLSIDMMDNMR-KIWHHQLALNSFSKLKALEVTNCGKLANIFPANIIMRRRLDRLE 751 (2123)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~Le~L~i~~c~~l~-~i~~~~~~~~~l~~L~~L~i~~C~~L~~~~p~~~~~~~~l~~L~ 751 (2123)
.....+++|+.|++++|.-.. .+ +..+..+++|+.|++++|. +..+.|.. +..+++|+
T Consensus 439 --------------~~~~~l~~L~~L~l~~n~l~~~~~---p~~~~~l~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~ 497 (570)
T 2z63_A 439 --------------GIFNGLSSLEVLKMAGNSFQENFL---PDIFTELRNLTFLDLSQCQ-LEQLSPTA---FNSLSSLQ 497 (570)
T ss_dssp --------------TTTTTCTTCCEEECTTCEEGGGEE---CSCCTTCTTCCEEECTTSC-CCEECTTT---TTTCTTCC
T ss_pred --------------hhhhcCCcCcEEECcCCcCccccc---hhhhhcccCCCEEECCCCc-cccCChhh---hhcccCCC
Confidence 123478899999999985321 22 3456778899999999975 55655553 57889999
Q ss_pred EEEEecCCCcceeecccCCCCCccccccchhhhcccccccccCceecccCc
Q 000128 752 YLKVDGCASVEEIIGETSSNGNICVEEEEDEEARRRFVFPRLTWLNLSLLP 802 (2123)
Q Consensus 752 ~L~i~~C~~l~~i~~~~~~~g~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~ 802 (2123)
+|++++| .++.+.. .....+++|+.|.+++++
T Consensus 498 ~L~l~~n-~l~~~~~------------------~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 498 VLNMASN-QLKSVPD------------------GIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp EEECCSS-CCSCCCT------------------TTTTTCTTCCEEECCSSC
T ss_pred EEeCCCC-cCCCCCH------------------HHhhcccCCcEEEecCCc
Confidence 9999997 4443321 112356778888887775
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=2.4e-25 Score=297.26 Aligned_cols=350 Identities=15% Similarity=0.119 Sum_probs=186.1
Q ss_pred EEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCC-cccCCCCCccEEEcCCCCCC
Q 000128 133 ISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLP-SSIGCLISLRTLTLESCLLG 211 (2123)
Q Consensus 133 L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp-~~i~~L~~Lr~L~L~~~~l~ 211 (2123)
.+.+++.+..+|..+ .++|++|++++|.+.+..|.. |.++++|++|++++|.++.++ ..|+++++|++|++++|.++
T Consensus 10 c~~~~~~l~~ip~~~-~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 87 (549)
T 2z81_A 10 CDGRSRSFTSIPSGL-TAAMKSLDLSFNKITYIGHGD-LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87 (549)
T ss_dssp EECTTSCCSSCCSCC-CTTCCEEECCSSCCCEECSST-TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred EECCCCccccccccC-CCCccEEECcCCccCccChhh-hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC
Confidence 455666677777654 367777777777766433333 467777777777777777554 56777777777777777776
Q ss_pred -CC-ccccCCCCCcEEEccCCCCcc--cccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccccccccc
Q 000128 212 -DV-ATIGDLKKLEILSLRHSDVEE--LPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQ 287 (2123)
Q Consensus 212 -~p-~~i~~L~~L~~L~L~~n~l~~--lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~~ 287 (2123)
.+ ..++++++|++|++++|.++. +|..++++++|++|++++|..++.+|+..++++++|++|++++|.+.+.
T Consensus 88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~---- 163 (549)
T 2z81_A 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY---- 163 (549)
T ss_dssp SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE----
T ss_pred ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc----
Confidence 33 347777777777777777763 3566777777777777777656666654577777777777777766532
Q ss_pred cccChhhhCCCCCCCEEEEecCCCCCCChhh--hccccceeeeccCCccCCCCCcccceeeecccccCccccchhHHHhc
Q 000128 288 SNASLVELKQLSRLTTLEVHIPDAQVMPQDL--LSVELERYRICIGDVWSWSGEHETSRRLKLSALNKCIYLGYGMQMLL 365 (2123)
Q Consensus 288 ~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~p~~i~~~l 365 (2123)
.+..++++++|+.|+++.|....++... ...+|+.+.+..+...... ..|.++...+
T Consensus 164 ---~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~------------------~~~~~~~~~~ 222 (549)
T 2z81_A 164 ---QSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQ------------------FSPLPVDEVS 222 (549)
T ss_dssp ---CTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCC------------------CCCCSSCCCC
T ss_pred ---ChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccccc------------------ccccchhhhh
Confidence 3556667777777777777665554433 1344444444332211000 0000111112
Q ss_pred cCCcEEecccccCcccccccc-CCCCCCCCccEEEeeccCCccEeecc--ccccCCCcCcccceeeccccccchhhhcCC
Q 000128 366 KGIEDLYLDELNGFQNALLEL-EDGEVFPLLKHLHVQNVCEILYIVNL--VGWEHCNAFPLLESLFLHNLMRLEMVYRGQ 442 (2123)
Q Consensus 366 ~~L~~L~L~~~~~~~~~~~~l-~~~~~l~~L~~L~L~~~~~~~~i~~~--~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~ 442 (2123)
++|+.|+++++.........+ .....+++|+.|++.+|.... +... ........+++|+.|.+.++.--.......
T Consensus 223 ~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~ 301 (549)
T 2z81_A 223 SPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG-LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYD 301 (549)
T ss_dssp CCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEEC-CSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCC
T ss_pred hcccceeccccccchhHHHHHHHHhhhhccccccccccccccc-cccccccchhhhhhhcccccccccccccchhhhccc
Confidence 344444444332111111000 011334455555555442110 0000 000112234445555444331100000000
Q ss_pred C--CcccCCCccEEEEecCCCCCCCCChhhhhhcCCCcEEEecccccchhhhccCCcccccccccccccccceeecccC
Q 000128 443 L--TEHSFSKLRIIKVCQCDNLKHLFSFPMARNLLQLQKLKVSFCESLKLIVGKESSETHNVHEIINFTQLHSLTLQCL 519 (2123)
Q Consensus 443 ~--~~~~~~~L~~L~l~~c~~L~~lp~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~fp~L~~L~l~~~ 519 (2123)
. ....+++|++|.+.++ +++.+|. ..+.++++|++|++++|.....++.. ......+++|+.|+++++
T Consensus 302 l~~~~~~~~~L~~L~l~~n-~l~~ip~-~~~~~l~~L~~L~Ls~N~l~~~~~~~-------~~~~~~l~~L~~L~Ls~N 371 (549)
T 2z81_A 302 LSTVYSLLEKVKRITVENS-KVFLVPC-SFSQHLKSLEFLDLSENLMVEEYLKN-------SACKGAWPSLQTLVLSQN 371 (549)
T ss_dssp CCHHHHHSTTCCEEEEESS-CCCCCCH-HHHHHCTTCCEEECCSSCCCHHHHHH-------HTCTTSSTTCCEEECTTS
T ss_pred chhhhhhcccceEEEeccC-ccccCCH-HHHhcCccccEEEccCCccccccccc-------hhhhhccccCcEEEccCC
Confidence 0 0123567888888885 5777765 33357888888888887544333210 001124566666666654
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=2.2e-24 Score=287.99 Aligned_cols=152 Identities=21% Similarity=0.279 Sum_probs=122.7
Q ss_pred CCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCC-CcccCCCCCccEEEcCCCCCC--CCccccCCCCCcEEE
Q 000128 150 PKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSL-PSSIGCLISLRTLTLESCLLG--DVATIGDLKKLEILS 226 (2123)
Q Consensus 150 ~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~l-p~~i~~L~~Lr~L~L~~~~l~--~p~~i~~L~~L~~L~ 226 (2123)
+...+-+.+++.+. .+|..+ .+.|++|++++|.++.+ |..++++++|++|++++|.++ .+..|+++++|++|+
T Consensus 5 ~~~~~c~~~~~~l~-~ip~~~---~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 80 (549)
T 2z81_A 5 DASGVCDGRSRSFT-SIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80 (549)
T ss_dssp CTTSEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCceEECCCCccc-cccccC---CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence 33444566677766 688765 37899999999999966 568999999999999999998 457899999999999
Q ss_pred ccCCCCcccccc-cCCCCCccEEeccCCCCCcc--cChhhhCCCCCCCEEEccCcccccccccccccChhhhCCCCCCCE
Q 000128 227 LRHSDVEELPGE-IGQLTRLKLLDLSNCMKLKV--IRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTT 303 (2123)
Q Consensus 227 L~~n~l~~lP~~-i~~L~~L~~L~l~~~~~l~~--lp~~~i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~ 303 (2123)
+++|+++.+|.. ++++++|++|++++|. +.. +|.. ++++++|++|++++|.+.+.+ ....++++++|+.
T Consensus 81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~~l~~L~~L~L~~n~~~~~~------~~~~~~~l~~L~~ 152 (549)
T 2z81_A 81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSL-FPNLTNLQTLRIGNVETFSEI------RRIDFAGLTSLNE 152 (549)
T ss_dssp CTTSCCCSCCHHHHTTCTTCCEEECTTCC-CSSSCSSCS-CTTCTTCCEEEEEESSSCCEE------CTTTTTTCCEEEE
T ss_pred CCCCccCccCHHHhccCCCCcEEECCCCc-ccccchhhh-hhccCCccEEECCCCcccccc------CHhhhhcccccCe
Confidence 999999988766 9999999999999998 654 4544 899999999999998744222 2356888999999
Q ss_pred EEEecCCCCC
Q 000128 304 LEVHIPDAQV 313 (2123)
Q Consensus 304 L~l~~~~~~~ 313 (2123)
|+++.|.+..
T Consensus 153 L~L~~n~l~~ 162 (549)
T 2z81_A 153 LEIKALSLRN 162 (549)
T ss_dssp EEEEETTCCE
T ss_pred eeccCCcccc
Confidence 9999888764
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=4.2e-24 Score=298.05 Aligned_cols=485 Identities=17% Similarity=0.129 Sum_probs=290.2
Q ss_pred CCCceEEEccCCCCccCC-CCC-CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCC-CcccCCCCCccEE
Q 000128 127 HKDPTAISIPFRGIYEFP-ERL-ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSL-PSSIGCLISLRTL 203 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp-~~~-~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~l-p~~i~~L~~Lr~L 203 (2123)
++++++|++++|.+..++ ..+ ++++|++|++++|...+.++...|.++++|++|+|++|.+..+ |..|+++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 589999999999999664 344 8999999999999777778666679999999999999999966 8899999999999
Q ss_pred EcCCCCCC--CCcc--ccCCCCCcEEEccCCCCcccc--cccCCCCCccEEeccCCCCCcccChhhhCCC--CCCCEEEc
Q 000128 204 TLESCLLG--DVAT--IGDLKKLEILSLRHSDVEELP--GEIGQLTRLKLLDLSNCMKLKVIRPNVISSL--SRLEELYM 275 (2123)
Q Consensus 204 ~L~~~~l~--~p~~--i~~L~~L~~L~L~~n~l~~lP--~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L--~~L~~L~l 275 (2123)
++++|.++ .|.. ++++++|++|++++|.+..++ ..++++++|++|++++|. +..+.+..++.+ ++|+.|++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC-CCCCCSGGGHHHHHCSSCCCEE
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc-CCeeCHHHcccccCCccceEEC
Confidence 99999998 3544 999999999999999998663 579999999999999998 555444447777 89999999
Q ss_pred cCcccccccccccccChhhhCCCC------CCCEEEEecCCCCCC-Chhh----hccccceeeeccCC------------
Q 000128 276 GNSFTEWEIEGQSNASLVELKQLS------RLTTLEVHIPDAQVM-PQDL----LSVELERYRICIGD------------ 332 (2123)
Q Consensus 276 ~~n~~~~~~~~~~~~~~~~l~~L~------~L~~L~l~~~~~~~~-~~~~----~~~~L~~l~i~~~~------------ 332 (2123)
++|.+.+.. +..++.+. .|+.|+++.|.+... +..+ ...++..+.+....
T Consensus 182 ~~n~l~~~~-------~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~ 254 (844)
T 3j0a_A 182 AANSLYSRV-------SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254 (844)
T ss_dssp CCSBSCCCC-------CCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTT
T ss_pred CCCcccccc-------ccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCC
Confidence 999887432 22233333 499999998876432 2222 11233333332000
Q ss_pred -ccCCCCC--cccceeeecccccCccccchhHHHhccCCcEEecccccCccccccccCCCCCCCCccEEEeeccCCccEe
Q 000128 333 -VWSWSGE--HETSRRLKLSALNKCIYLGYGMQMLLKGIEDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNVCEILYI 409 (2123)
Q Consensus 333 -~~~~~~~--~~~L~~L~L~~~~~~~~~p~~i~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~~~~~i 409 (2123)
....... ..+++.|++++..-....|.++. .+++|+.|+++++... ...+. .++++++|++|++++|......
T Consensus 255 ~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~i~-~~~~~--~~~~l~~L~~L~Ls~N~l~~~~ 330 (844)
T 3j0a_A 255 PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE-TLKDLKVLNLAYNKIN-KIADE--AFYGLDNLQVLNLSYNLLGELY 330 (844)
T ss_dssp GGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS-SCCCCCEEEEESCCCC-EECTT--TTTTCSSCCEEEEESCCCSCCC
T ss_pred CChhhhhccccCCccEEECCCCcccccChhhhh-cCCCCCEEECCCCcCC-CCChH--HhcCCCCCCEEECCCCCCCccC
Confidence 0000111 24566666664332222222222 3566777777664432 22221 2366677777777766322111
Q ss_pred eccccccCCCcCcccceeeccccccchhhhcCCCCcccCCCccEEEEecCCCCCCCCChhhhhhcCCCcEEEecccccch
Q 000128 410 VNLVGWEHCNAFPLLESLFLHNLMRLEMVYRGQLTEHSFSKLRIIKVCQCDNLKHLFSFPMARNLLQLQKLKVSFCESLK 489 (2123)
Q Consensus 410 ~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~~~L~~L~~L~l~~c~~l~ 489 (2123)
+ .....+++|+.|++.+. .+..+.. .....+++|++|+++++ .++.++. +++|+.|+++++. +.
T Consensus 331 ~-----~~~~~l~~L~~L~L~~N-~i~~~~~--~~~~~l~~L~~L~Ls~N-~l~~i~~------~~~L~~L~l~~N~-l~ 394 (844)
T 3j0a_A 331 S-----SNFYGLPKVAYIDLQKN-HIAIIQD--QTFKFLEKLQTLDLRDN-ALTTIHF------IPSIPDIFLSGNK-LV 394 (844)
T ss_dssp S-----CSCSSCTTCCEEECCSC-CCCCCCS--SCSCSCCCCCEEEEETC-CSCCCSS------CCSCSEEEEESCC-CC
T ss_pred H-----HHhcCCCCCCEEECCCC-CCCccCh--hhhcCCCCCCEEECCCC-CCCcccC------CCCcchhccCCCC-cc
Confidence 1 12345666677766653 2332211 11234566667766663 4444432 4556666665542 22
Q ss_pred hhhccCCcc----------cc--cccccccccccceeecccCccccccccccCCCCCCCcccccccccccee--cccCcc
Q 000128 490 LIVGKESSE----------TH--NVHEIINFTQLHSLTLQCLPQLTSSGFDLERPLLSPTISATTLAFEEVI--AEDDSD 555 (2123)
Q Consensus 490 ~i~~~~~~~----------~~--~~~~~~~fp~L~~L~l~~~~~L~~l~~~~~~~~~~p~l~~~~~~~~~~i--~~~~~~ 555 (2123)
.++...... .. .......+++|+.|+++++. +..+. ........+.+..++.....+- ...+.+
T Consensus 395 ~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~ 472 (844)
T 3j0a_A 395 TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR-FSSCS-GDQTPSENPSLEQLFLGENMLQLAWETELC 472 (844)
T ss_dssp CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCC-CCCCC-SSSSSCSCTTCCBCEEESCCCSSSCCSCCC
T ss_pred cccccccccceeecccCccccCchhhhhhcCCccceeeCCCCc-ccccc-cccccccCCccccccCCCCccccccccccc
Confidence 221110000 00 00011256788888877753 22220 0000111233333333222111 000111
Q ss_pred cccccccccCCCccceeeccccccccccccccccccccccCcceEEEecCCCcccccchhhHhhhhccceEEEeecCCcc
Q 000128 556 ESLFNNKVIFPNLEKLKLSSINIEKIWHDQYPLMLNSCSQNLTNLTVETCSRLKFLFSYSMVDSLVRLQQLEIRKCESME 635 (2123)
Q Consensus 556 ~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~ 635 (2123)
. .....+++|+.|+|++|+++.+.+..+. .+++|+.|++++ ++++.+++..+. ++|+.|+++++. +.
T Consensus 473 ~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-----~l~~L~~L~Ls~-N~l~~l~~~~~~---~~L~~L~Ls~N~-l~ 539 (844)
T 3j0a_A 473 W---DVFEGLSHLQVLYLNHNYLNSLPPGVFS-----HLTALRGLSLNS-NRLTVLSHNDLP---ANLEILDISRNQ-LL 539 (844)
T ss_dssp S---SCSSCBCCEECCCCCHHHHTTCCTTSSS-----SCCSCSEEEEES-CCCSSCCCCCCC---SCCCEEEEEEEC-CC
T ss_pred h---hhhcCcccccEEECCCCcccccChhHcc-----chhhhheeECCC-CCCCccChhhhh---ccccEEECCCCc-CC
Confidence 1 1123467888888888888777554433 478888888888 467776654332 778888888865 43
Q ss_pred eeeccCccccccccCCcceeeeeccCC
Q 000128 636 AVIDTTDIEINSVEFPSLHHLRIVDCP 662 (2123)
Q Consensus 636 ~i~~~~~~~~~~~~l~~L~~L~l~~c~ 662 (2123)
.+. ...+++|+.|++.+.|
T Consensus 540 ~~~--------~~~~~~L~~l~l~~Np 558 (844)
T 3j0a_A 540 APN--------PDVFVSLSVLDITHNK 558 (844)
T ss_dssp CCC--------SCCCSSCCEEEEEEEC
T ss_pred CCC--------hhHhCCcCEEEecCCC
Confidence 321 1245677888876644
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=1.2e-24 Score=292.89 Aligned_cols=419 Identities=14% Similarity=0.151 Sum_probs=286.0
Q ss_pred CCceEEEccCCCCc-cCCCCC-CCCCceEEEeecCcC-------------------------------------------
Q 000128 128 KDPTAISIPFRGIY-EFPERL-ECPKLKLFVLFSENL------------------------------------------- 162 (2123)
Q Consensus 128 ~~l~~L~l~~n~~~-~lp~~~-~~~~Lr~L~l~~n~~------------------------------------------- 162 (2123)
.+++.|+++++.+. .+|+.+ ++++|++|++++|.+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 47999999999998 777766 899999999998843
Q ss_pred -----------------------------------CCccchhHhhCCCCccEEEeecCCCCC------------------
Q 000128 163 -----------------------------------SLRIPDLFFEGMTELRVLSFTGFRFPS------------------ 189 (2123)
Q Consensus 163 -----------------------------------~~~~p~~~~~~l~~Lr~L~L~~n~i~~------------------ 189 (2123)
.+ +|.. |+++++|++|++++|.++.
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHH-HhcccCCCEEECcCCccccccccccccccccchhccc
Confidence 22 6665 4889999999999999997
Q ss_pred CCcccC--CCCCccEEEcCCCCCC--CCccccCCCCCcEEEccCCC-Cc--ccccccCCC------CCccEEeccCCCCC
Q 000128 190 LPSSIG--CLISLRTLTLESCLLG--DVATIGDLKKLEILSLRHSD-VE--ELPGEIGQL------TRLKLLDLSNCMKL 256 (2123)
Q Consensus 190 lp~~i~--~L~~Lr~L~L~~~~l~--~p~~i~~L~~L~~L~L~~n~-l~--~lP~~i~~L------~~L~~L~l~~~~~l 256 (2123)
+|+.++ ++++|++|++++|.+. .|..++++++|++|++++|+ ++ .+|..++++ ++|++|++++|. +
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l 317 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-L 317 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-C
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-C
Confidence 999999 9999999999999876 67899999999999999998 88 489988887 899999999998 6
Q ss_pred cccCh--hhhCCCCCCCEEEccCcccccccccccccChhhhCCCCCCCEEEEecCCCCCCChhhhccccceeeeccCCcc
Q 000128 257 KVIRP--NVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQVMPQDLLSVELERYRICIGDVW 334 (2123)
Q Consensus 257 ~~lp~--~~i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~ 334 (2123)
..+|. . ++++++|++|++++|.+.|.+ + .++++++|+.|+++.|.+..+|..+
T Consensus 318 ~~ip~~~~-l~~l~~L~~L~L~~N~l~g~i-------p-~~~~l~~L~~L~L~~N~l~~lp~~l---------------- 372 (636)
T 4eco_A 318 KTFPVETS-LQKMKKLGMLECLYNQLEGKL-------P-AFGSEIKLASLNLAYNQITEIPANF---------------- 372 (636)
T ss_dssp SSCCCHHH-HTTCTTCCEEECCSCCCEEEC-------C-CCEEEEEESEEECCSSEEEECCTTS----------------
T ss_pred CccCchhh-hccCCCCCEEeCcCCcCccch-------h-hhCCCCCCCEEECCCCccccccHhh----------------
Confidence 78987 5 899999999999999887544 4 6788889999999998877666544
Q ss_pred CCCCCccc-ceeeecccccCccccchhHHHh-ccCCcEEecccccCccccccccC----CCCCCCCccEEEeeccCCccE
Q 000128 335 SWSGEHET-SRRLKLSALNKCIYLGYGMQML-LKGIEDLYLDELNGFQNALLELE----DGEVFPLLKHLHVQNVCEILY 408 (2123)
Q Consensus 335 ~~~~~~~~-L~~L~L~~~~~~~~~p~~i~~~-l~~L~~L~L~~~~~~~~~~~~l~----~~~~l~~L~~L~L~~~~~~~~ 408 (2123)
..+.+ |+.|++++..-. .+|.++... +++|+.|+++++.........++ ....+++|++|++++|... .
T Consensus 373 ---~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~ 447 (636)
T 4eco_A 373 ---CGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-K 447 (636)
T ss_dssp ---EEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-S
T ss_pred ---hhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-c
Confidence 12233 455555533322 445544321 34678888877554322211120 0015668888888877432 3
Q ss_pred eeccccccCCCcCcccceeeccccccchhhhcCCCC-----cccCCCccEEEEecCCCCCCCCChhhhh--hcCCCcEEE
Q 000128 409 IVNLVGWEHCNAFPLLESLFLHNLMRLEMVYRGQLT-----EHSFSKLRIIKVCQCDNLKHLFSFPMAR--NLLQLQKLK 481 (2123)
Q Consensus 409 i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~-----~~~~~~L~~L~l~~c~~L~~lp~~~~~~--~L~~L~~L~ 481 (2123)
++.. ....+++|+.|++.+.. +..++...+. ...+++|++|+++++ +++.+|. .+. .+++|++|+
T Consensus 448 lp~~----~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~--~~~~~~l~~L~~L~ 519 (636)
T 4eco_A 448 FPKE----LFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSD--DFRATTLPYLVGID 519 (636)
T ss_dssp CCTH----HHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCG--GGSTTTCTTCCEEE
T ss_pred CCHH----HHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcCC-cCCccCh--hhhhccCCCcCEEE
Confidence 3221 12246778888887642 3333221111 011238999999885 6778875 344 889999999
Q ss_pred ecccccchhhhccCCcccccccccccccccceeecccCccccccccccCCCC-CCCccccccccccceecccCccccccc
Q 000128 482 VSFCESLKLIVGKESSETHNVHEIINFTQLHSLTLQCLPQLTSSGFDLERPL-LSPTISATTLAFEEVIAEDDSDESLFN 560 (2123)
Q Consensus 482 l~~c~~l~~i~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~l~~~~~~~~-~~p~l~~~~~~~~~~i~~~~~~~~~~~ 560 (2123)
++++. +..++. ....+++|+.|+++++..+ ..|... ..| .
T Consensus 520 Ls~N~-l~~ip~----------~~~~l~~L~~L~Ls~N~~l-----s~N~l~~~~p-----------------------~ 560 (636)
T 4eco_A 520 LSYNS-FSKFPT----------QPLNSSTLKGFGIRNQRDA-----QGNRTLREWP-----------------------E 560 (636)
T ss_dssp CCSSC-CSSCCC----------GGGGCSSCCEEECCSCBCT-----TCCBCCCCCC-----------------------T
T ss_pred CCCCC-CCCcCh----------hhhcCCCCCEEECCCCccc-----ccCcccccCh-----------------------H
Confidence 99874 333432 2345788999999776522 111110 011 1
Q ss_pred ccccCCCccceeeccccccccccccccccccccccCcceEEEecCCCcccccchhhH----h---hhhccceEEEeecCC
Q 000128 561 NKVIFPNLEKLKLSSINIEKIWHDQYPLMLNSCSQNLTNLTVETCSRLKFLFSYSMV----D---SLVRLQQLEIRKCES 633 (2123)
Q Consensus 561 ~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~----~---~l~~L~~L~I~~C~~ 633 (2123)
....+++|++|+|++|++..+... ..++|+.|++++|+-. .+...... . .+...+..+|.+|+.
T Consensus 561 ~l~~l~~L~~L~Ls~N~l~~ip~~--------~~~~L~~L~Ls~N~l~-~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~ 631 (636)
T 4eco_A 561 GITLCPSLTQLQIGSNDIRKVNEK--------ITPNISVLDIKDNPNI-SIDLSYVCPYIEAGMYMLFYDKTQDIRGCDA 631 (636)
T ss_dssp TGGGCSSCCEEECCSSCCCBCCSC--------CCTTCCEEECCSCTTC-EEECTTTHHHHHTTCCEEECCTTSEEESCGG
T ss_pred HHhcCCCCCEEECCCCcCCccCHh--------HhCcCCEEECcCCCCc-cccHHhcchhhhcccceeecCCccccCCCcc
Confidence 123478999999999998776432 1378999999997533 32221111 1 123345668889987
Q ss_pred cc
Q 000128 634 ME 635 (2123)
Q Consensus 634 L~ 635 (2123)
++
T Consensus 632 L~ 633 (636)
T 4eco_A 632 LD 633 (636)
T ss_dssp GC
T ss_pred cc
Confidence 64
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=4.7e-24 Score=290.12 Aligned_cols=392 Identities=15% Similarity=0.140 Sum_probs=275.6
Q ss_pred CCceEEEccCCCCc-cCCCCC-CCCCceEEEe-ecCcCCCc---------------------------------------
Q 000128 128 KDPTAISIPFRGIY-EFPERL-ECPKLKLFVL-FSENLSLR--------------------------------------- 165 (2123)
Q Consensus 128 ~~l~~L~l~~n~~~-~lp~~~-~~~~Lr~L~l-~~n~~~~~--------------------------------------- 165 (2123)
.+++.|+++++++. .+|+.+ ++++|++|++ ++|.+.+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57999999999998 778777 8999999999 66643222
Q ss_pred -------------------------------------cchhHhhCCCCccEEEeecCCCCC------------------C
Q 000128 166 -------------------------------------IPDLFFEGMTELRVLSFTGFRFPS------------------L 190 (2123)
Q Consensus 166 -------------------------------------~p~~~~~~l~~Lr~L~L~~n~i~~------------------l 190 (2123)
+|.. |.++++|++|+|++|.++. +
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 6665 4889999999999999998 9
Q ss_pred CcccC--CCCCccEEEcCCCCCC--CCccccCCCCCcEEEccCCC-Ccc--cccccCCCC-------CccEEeccCCCCC
Q 000128 191 PSSIG--CLISLRTLTLESCLLG--DVATIGDLKKLEILSLRHSD-VEE--LPGEIGQLT-------RLKLLDLSNCMKL 256 (2123)
Q Consensus 191 p~~i~--~L~~Lr~L~L~~~~l~--~p~~i~~L~~L~~L~L~~n~-l~~--lP~~i~~L~-------~L~~L~l~~~~~l 256 (2123)
|+.++ ++++|++|+|++|.+. .|..++++++|++|++++|+ ++. +|..++++. +|++|++++|. +
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L 560 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-L 560 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-C
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-C
Confidence 99988 9999999999999866 67899999999999999997 884 888777665 99999999998 6
Q ss_pred cccCh--hhhCCCCCCCEEEccCcccccccccccccChhhhCCCCCCCEEEEecCCCCCCChhhhccccceeeeccCCcc
Q 000128 257 KVIRP--NVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQVMPQDLLSVELERYRICIGDVW 334 (2123)
Q Consensus 257 ~~lp~--~~i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~ 334 (2123)
..+|. . ++++++|++|++++|.+. . .+ .++++++|+.|+++.|.+..+|..+
T Consensus 561 ~~ip~~~~-l~~L~~L~~L~Ls~N~l~-~-------lp-~~~~L~~L~~L~Ls~N~l~~lp~~l---------------- 614 (876)
T 4ecn_A 561 EEFPASAS-LQKMVKLGLLDCVHNKVR-H-------LE-AFGTNVKLTDLKLDYNQIEEIPEDF---------------- 614 (876)
T ss_dssp CBCCCHHH-HTTCTTCCEEECTTSCCC-B-------CC-CCCTTSEESEEECCSSCCSCCCTTS----------------
T ss_pred CccCChhh-hhcCCCCCEEECCCCCcc-c-------ch-hhcCCCcceEEECcCCccccchHHH----------------
Confidence 78998 5 899999999999999886 2 23 7889999999999999988777554
Q ss_pred CCCCCccc-ceeeecccccCccccchhHHHh-ccCCcEEecccccCccccccccC-CCC--CCCCccEEEeeccCCccEe
Q 000128 335 SWSGEHET-SRRLKLSALNKCIYLGYGMQML-LKGIEDLYLDELNGFQNALLELE-DGE--VFPLLKHLHVQNVCEILYI 409 (2123)
Q Consensus 335 ~~~~~~~~-L~~L~L~~~~~~~~~p~~i~~~-l~~L~~L~L~~~~~~~~~~~~l~-~~~--~l~~L~~L~L~~~~~~~~i 409 (2123)
..+.+ |+.|+++++.- ..+|.++... .++|+.|+++++... ..+|.++ ..+ ..++|+.|++++|... .+
T Consensus 615 ---~~l~~~L~~L~Ls~N~L-~~lp~~~~~~~~~~L~~L~Ls~N~l~-g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~l 688 (876)
T 4ecn_A 615 ---CAFTDQVEGLGFSHNKL-KYIPNIFNAKSVYVMGSVDFSYNKIG-SEGRNISCSMDDYKGINASTVTLSYNEIQ-KF 688 (876)
T ss_dssp ---CEECTTCCEEECCSSCC-CSCCSCCCTTCSSCEEEEECCSSCTT-TTSSSCSSCTTTCCCCCEEEEECCSSCCC-SC
T ss_pred ---hhccccCCEEECcCCCC-CcCchhhhccccCCCCEEECcCCcCC-CccccchhhhccccCCCcCEEEccCCcCC-cc
Confidence 12223 44555553322 2445443321 234788888775443 2333331 112 3457888888887432 33
Q ss_pred eccccccCCCcCcccceeeccccccchhhhcCCCC-----cccCCCccEEEEecCCCCCCCCChhhhh--hcCCCcEEEe
Q 000128 410 VNLVGWEHCNAFPLLESLFLHNLMRLEMVYRGQLT-----EHSFSKLRIIKVCQCDNLKHLFSFPMAR--NLLQLQKLKV 482 (2123)
Q Consensus 410 ~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~-----~~~~~~L~~L~l~~c~~L~~lp~~~~~~--~L~~L~~L~l 482 (2123)
+.. ....+++|+.|++++. .+..++...+. ...+++|+.|++++| +++.+|. .+. .+++|+.|++
T Consensus 689 p~~----~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~--~l~~~~l~~L~~L~L 760 (876)
T 4ecn_A 689 PTE----LFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSD--DFRATTLPYLSNMDV 760 (876)
T ss_dssp CHH----HHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCG--GGSTTTCTTCCEEEC
T ss_pred CHH----HHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCccchH--HhhhccCCCcCEEEe
Confidence 321 1124678888888764 33344322111 112348999999986 6778876 444 8899999999
Q ss_pred cccccchhhhccCCcccccccccccccccceeecccCccccccccccCCCC-CCCccccccccccceecccCcccccccc
Q 000128 483 SFCESLKLIVGKESSETHNVHEIINFTQLHSLTLQCLPQLTSSGFDLERPL-LSPTISATTLAFEEVIAEDDSDESLFNN 561 (2123)
Q Consensus 483 ~~c~~l~~i~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~l~~~~~~~~-~~p~l~~~~~~~~~~i~~~~~~~~~~~~ 561 (2123)
++|. +..++. ....+++|+.|++++++.+ ..|... ..| ..
T Consensus 761 s~N~-L~~lp~----------~l~~L~~L~~L~Ls~N~~l-----s~N~l~~~ip-----------------------~~ 801 (876)
T 4ecn_A 761 SYNC-FSSFPT----------QPLNSSQLKAFGIRHQRDA-----EGNRILRQWP-----------------------TG 801 (876)
T ss_dssp CSSC-CSSCCC----------GGGGCTTCCEEECCCCBCT-----TCCBCCCCCC-----------------------TT
T ss_pred CCCC-CCccch----------hhhcCCCCCEEECCCCCCc-----ccccccccCh-----------------------HH
Confidence 9874 333431 2346789999999886622 122110 011 11
Q ss_pred cccCCCccceeeccccccccccccccccccccccCcceEEEecCCCc
Q 000128 562 KVIFPNLEKLKLSSINIEKIWHDQYPLMLNSCSQNLTNLTVETCSRL 608 (2123)
Q Consensus 562 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~~l~~L~~L~l~~c~~L 608 (2123)
...+++|+.|+|++|.+..+... ..++|+.|+|++|+..
T Consensus 802 l~~L~~L~~L~Ls~N~L~~Ip~~--------l~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 802 ITTCPSLIQLQIGSNDIRKVDEK--------LTPQLYILDIADNPNI 840 (876)
T ss_dssp GGGCSSCCEEECCSSCCCBCCSC--------CCSSSCEEECCSCTTC
T ss_pred HhcCCCCCEEECCCCCCCccCHh--------hcCCCCEEECCCCCCC
Confidence 23489999999999998766433 2368999999997643
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=1.1e-23 Score=278.85 Aligned_cols=142 Identities=20% Similarity=0.218 Sum_probs=82.8
Q ss_pred eEEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCC-CcccCCCCCccEEEcCCCC
Q 000128 131 TAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSL-PSSIGCLISLRTLTLESCL 209 (2123)
Q Consensus 131 ~~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~l-p~~i~~L~~Lr~L~L~~~~ 209 (2123)
+++++++|++..+|..+. ++|++|++++|.+.+ ++...|.++++|++|++++|.++.+ |..|+++++|++|++++|.
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISE-LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCC-CCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccc-cChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 566777777766665543 666666666666653 3333346666666666666666654 4556666666666666666
Q ss_pred CC-CCccccCCCCCcEEEccCCCCcc--cccccCCCCCccEEeccCCCCCcccChhhhCCCCCC--CEEEccCccc
Q 000128 210 LG-DVATIGDLKKLEILSLRHSDVEE--LPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRL--EELYMGNSFT 280 (2123)
Q Consensus 210 l~-~p~~i~~L~~L~~L~L~~n~l~~--lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L--~~L~l~~n~~ 280 (2123)
++ .|.. .+.+|++|++++|.++. +|..++++++|++|++++|. +.. ..++.+++| ++|++++|.+
T Consensus 81 l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 81 LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch---hhccccccceeeEEEeecccc
Confidence 65 3333 56666666666666553 34556666666666666655 332 114455555 6666655554
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=2.3e-23 Score=275.70 Aligned_cols=141 Identities=21% Similarity=0.235 Sum_probs=124.2
Q ss_pred eEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCC-cccCCCCCccEEEcCCCCCC--CCccccCCCCCcEEEccC
Q 000128 153 KLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLP-SSIGCLISLRTLTLESCLLG--DVATIGDLKKLEILSLRH 229 (2123)
Q Consensus 153 r~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp-~~i~~L~~Lr~L~L~~~~l~--~p~~i~~L~~L~~L~L~~ 229 (2123)
+++++++|.+. .+|..++ ++|++|++++|.++.++ ..|.++++|++|++++|.++ .|..|+++++|++|++++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCcc-ccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 67999999988 6887663 89999999999999886 68999999999999999999 468999999999999999
Q ss_pred CCCcccccccCCCCCccEEeccCCCCCcc--cChhhhCCCCCCCEEEccCcccccccccccccChhhhCCCCCC--CEEE
Q 000128 230 SDVEELPGEIGQLTRLKLLDLSNCMKLKV--IRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRL--TTLE 305 (2123)
Q Consensus 230 n~l~~lP~~i~~L~~L~~L~l~~~~~l~~--lp~~~i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L--~~L~ 305 (2123)
|+++.+|.. .+++|++|++++|. +.. +|.. ++++++|++|++++|.+.+ ..++.+++| +.|+
T Consensus 79 N~l~~lp~~--~l~~L~~L~L~~N~-l~~~~~p~~-~~~l~~L~~L~L~~n~l~~----------~~~~~l~~L~L~~L~ 144 (520)
T 2z7x_B 79 NKLVKISCH--PTVNLKHLDLSFNA-FDALPICKE-FGNMSQLKFLGLSTTHLEK----------SSVLPIAHLNISKVL 144 (520)
T ss_dssp SCCCEEECC--CCCCCSEEECCSSC-CSSCCCCGG-GGGCTTCCEEEEEESSCCG----------GGGGGGTTSCEEEEE
T ss_pred CceeecCcc--ccCCccEEeccCCc-cccccchhh-hccCCcceEEEecCcccch----------hhccccccceeeEEE
Confidence 999999988 89999999999999 554 5565 9999999999999998872 345666677 9999
Q ss_pred EecCCC
Q 000128 306 VHIPDA 311 (2123)
Q Consensus 306 l~~~~~ 311 (2123)
++.|.+
T Consensus 145 l~~n~l 150 (520)
T 2z7x_B 145 LVLGET 150 (520)
T ss_dssp EEECTT
T ss_pred eecccc
Confidence 999887
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.91 E-value=1.7e-22 Score=275.34 Aligned_cols=178 Identities=20% Similarity=0.247 Sum_probs=129.8
Q ss_pred EEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCc-ccCCCCCccEEEcCCCCC
Q 000128 132 AISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPS-SIGCLISLRTLTLESCLL 210 (2123)
Q Consensus 132 ~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~-~i~~L~~Lr~L~L~~~~l 210 (2123)
+.+-++.++.++|..+ -+++++|++++|.+. .+|...|.++++|++|+|++|.|+.+|+ +|+++++|++|+|++|.+
T Consensus 35 ~~~c~~~~l~~vP~~l-p~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNL-PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp EEECTTSCCSSCCSSS-CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEECCCCCcCccCCCC-CcCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence 3455555677888755 347888999988887 5666666889999999999998887754 688889999999999988
Q ss_pred C-CC-ccccCCCCCcEEEccCCCCcccccc-cCCCCCccEEeccCCCCCcc--cChhhhCCCCCCCEEEccCcccccccc
Q 000128 211 G-DV-ATIGDLKKLEILSLRHSDVEELPGE-IGQLTRLKLLDLSNCMKLKV--IRPNVISSLSRLEELYMGNSFTEWEIE 285 (2123)
Q Consensus 211 ~-~p-~~i~~L~~L~~L~L~~n~l~~lP~~-i~~L~~L~~L~l~~~~~l~~--lp~~~i~~L~~L~~L~l~~n~~~~~~~ 285 (2123)
+ .| ..|+++.+|++|++++|+++.+|.. |+++++|++|++++|. +.. +|.. ++.+++|++|++++|.+.+..
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~~- 189 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY- 189 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCEEC-
T ss_pred CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchh-hccchhhhhhcccCccccccc-
Confidence 8 44 5688899999999999988888764 8888999999998887 543 3443 788889999999888876322
Q ss_pred cccccChhhhCCCCC-CCEEEEecCCCCCCChh
Q 000128 286 GQSNASLVELKQLSR-LTTLEVHIPDAQVMPQD 317 (2123)
Q Consensus 286 ~~~~~~~~~l~~L~~-L~~L~l~~~~~~~~~~~ 317 (2123)
......+.++.. ...++++.|.+..++..
T Consensus 190 ---~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~ 219 (635)
T 4g8a_A 190 ---CTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 219 (635)
T ss_dssp ---GGGGHHHHTCTTCCCEEECTTCCCCEECTT
T ss_pred ---cccccchhhhhhhhhhhhcccCcccccCcc
Confidence 112233333332 34567777776655443
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=4.8e-24 Score=287.16 Aligned_cols=295 Identities=13% Similarity=0.101 Sum_probs=175.9
Q ss_pred CCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCC-------------CCc---------------------ccC
Q 000128 150 PKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPS-------------LPS---------------------SIG 195 (2123)
Q Consensus 150 ~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~-------------lp~---------------------~i~ 195 (2123)
.+++.|+++++.+.|.+|..+ +++++|++|+|++|.+.. +|. .++
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l-~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAI-GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGG-GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCcccCCcCChHH-hcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 579999999999999999876 899999999999996521 111 111
Q ss_pred -------------------CCCCccEEEcC--CCCCC-CCccccCCCCCcEEEccCCCCcc------------------c
Q 000128 196 -------------------CLISLRTLTLE--SCLLG-DVATIGDLKKLEILSLRHSDVEE------------------L 235 (2123)
Q Consensus 196 -------------------~L~~Lr~L~L~--~~~l~-~p~~i~~L~~L~~L~L~~n~l~~------------------l 235 (2123)
....++.+.+. .|.++ .|..++++++|++|++++|.++. +
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 11112222222 34455 56778888888888888888887 8
Q ss_pred ccccC--CCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcc-ccc-ccccccccChhhhCCC------CCCCEEE
Q 000128 236 PGEIG--QLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSF-TEW-EIEGQSNASLVELKQL------SRLTTLE 305 (2123)
Q Consensus 236 P~~i~--~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~-~~~-~~~~~~~~~~~~l~~L------~~L~~L~ 305 (2123)
|..++ ++++|++|++++|...+.+|.. ++++++|++|++++|. +++ .+ +..++++ ++|+.|+
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~~l~~~~l-------p~~~~~L~~~~~l~~L~~L~ 311 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGISGEQL-------KDDWQALADAPVGEKIQIIY 311 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEECTTCTTSCHHHH-------HHHHHHHHHSGGGGTCCEEE
T ss_pred chhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEECcCCCCCccccc-------hHHHHhhhccccCCCCCEEE
Confidence 88888 8888888888888867777766 8888888888888887 664 33 4555554 7888888
Q ss_pred EecCCCCCCCh--hhhccccceeeeccCCccCCCCCcccceeeecccccCccccchhHHHhccCCcEEecccccCccccc
Q 000128 306 VHIPDAQVMPQ--DLLSVELERYRICIGDVWSWSGEHETSRRLKLSALNKCIYLGYGMQMLLKGIEDLYLDELNGFQNAL 383 (2123)
Q Consensus 306 l~~~~~~~~~~--~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~p~~i~~~l~~L~~L~L~~~~~~~~~~ 383 (2123)
++.|.+..+|. .+ ..+++|+.|+++++.-...+| .+. .+++|+.|+++++... .+
T Consensus 312 L~~n~l~~ip~~~~l-------------------~~l~~L~~L~L~~N~l~g~ip-~~~-~l~~L~~L~L~~N~l~--~l 368 (636)
T 4eco_A 312 IGYNNLKTFPVETSL-------------------QKMKKLGMLECLYNQLEGKLP-AFG-SEIKLASLNLAYNQIT--EI 368 (636)
T ss_dssp CCSSCCSSCCCHHHH-------------------TTCTTCCEEECCSCCCEEECC-CCE-EEEEESEEECCSSEEE--EC
T ss_pred CCCCcCCccCchhhh-------------------ccCCCCCEEeCcCCcCccchh-hhC-CCCCCCEEECCCCccc--cc
Confidence 88888877765 33 112233344443222222333 222 2456666666664332 22
Q ss_pred cccCCCCCCCC-ccEEEeeccCCccEeeccccccCCCcCcccceeeccccccchhhhcCCCC-----cccCCCccEEEEe
Q 000128 384 LELEDGEVFPL-LKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLFLHNLMRLEMVYRGQLT-----EHSFSKLRIIKVC 457 (2123)
Q Consensus 384 ~~l~~~~~l~~-L~~L~L~~~~~~~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~-----~~~~~~L~~L~l~ 457 (2123)
|. .++.+++ |++|++++|... .++..+ ....+++|+.|++++..-....+. .+. .-.+++|++|+++
T Consensus 369 p~--~l~~l~~~L~~L~Ls~N~l~-~lp~~~---~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~~~~~~~~~~~L~~L~Ls 441 (636)
T 4eco_A 369 PA--NFCGFTEQVENLSFAHNKLK-YIPNIF---DAKSVSVMSAIDFSYNEIGSVDGK-NFDPLDPTPFKGINVSSINLS 441 (636)
T ss_dssp CT--TSEEECTTCCEEECCSSCCS-SCCSCC---CTTCSSCEEEEECCSSCTTTTTTC-SSCTTCSSCCCCCCEEEEECC
T ss_pred cH--hhhhhcccCcEEEccCCcCc-ccchhh---hhcccCccCEEECcCCcCCCcchh-hhcccccccccCCCCCEEECc
Confidence 22 1356666 777777666322 333211 112233556666554321111110 000 0134566777776
Q ss_pred cCCCCCCCCChhhhhhcCCCcEEEeccc
Q 000128 458 QCDNLKHLFSFPMARNLLQLQKLKVSFC 485 (2123)
Q Consensus 458 ~c~~L~~lp~~~~~~~L~~L~~L~l~~c 485 (2123)
++ +++.+|. ..+..+++|++|+++++
T Consensus 442 ~N-~l~~lp~-~~~~~l~~L~~L~Ls~N 467 (636)
T 4eco_A 442 NN-QISKFPK-ELFSTGSPLSSINLMGN 467 (636)
T ss_dssp SS-CCCSCCT-HHHHTTCCCSEEECCSS
T ss_pred CC-ccCcCCH-HHHccCCCCCEEECCCC
Confidence 63 4556655 33345666666666665
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=2.3e-23 Score=283.35 Aligned_cols=165 Identities=20% Similarity=0.214 Sum_probs=114.6
Q ss_pred CCceEEEeecCcCCCccchhHhhCCCCccEEEe-ecCCCCCC-Cc-----------------------------------
Q 000128 150 PKLKLFVLFSENLSLRIPDLFFEGMTELRVLSF-TGFRFPSL-PS----------------------------------- 192 (2123)
Q Consensus 150 ~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L-~~n~i~~l-p~----------------------------------- 192 (2123)
.+++.|+++++.+.|.+|+.+ +++++|++|+| ++|.+... |-
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l-~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAI-GQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGG-GGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcCchHH-hccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 579999999999999999876 89999999999 77743210 00
Q ss_pred --------------cc--CCCCCccEEEcCC--CCCC-CCccccCCCCCcEEEccCCCCcc------------------c
Q 000128 193 --------------SI--GCLISLRTLTLES--CLLG-DVATIGDLKKLEILSLRHSDVEE------------------L 235 (2123)
Q Consensus 193 --------------~i--~~L~~Lr~L~L~~--~~l~-~p~~i~~L~~L~~L~L~~n~l~~------------------l 235 (2123)
.+ .....++.+.+.. |.++ .|..++++++|++|++++|+++. +
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 00 1112233333332 4455 67788888888888888888887 8
Q ss_pred ccccC--CCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcc-ccc-ccccccccChhhhCCCCCCCEEEEecCCC
Q 000128 236 PGEIG--QLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSF-TEW-EIEGQSNASLVELKQLSRLTTLEVHIPDA 311 (2123)
Q Consensus 236 P~~i~--~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~-~~~-~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 311 (2123)
|..++ ++++|++|++++|...+.+|.. ++++++|++|++++|. +++ .++.........+..+++|+.|+++.|.+
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 88887 8888888888888877778866 8888888888888887 664 33111000001233455888888888887
Q ss_pred CCCCh
Q 000128 312 QVMPQ 316 (2123)
Q Consensus 312 ~~~~~ 316 (2123)
..+|.
T Consensus 561 ~~ip~ 565 (876)
T 4ecn_A 561 EEFPA 565 (876)
T ss_dssp CBCCC
T ss_pred CccCC
Confidence 77665
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.90 E-value=3.6e-22 Score=272.17 Aligned_cols=513 Identities=17% Similarity=0.141 Sum_probs=289.1
Q ss_pred CCCceEEEccCCCCccCCCC-C-CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCc-ccCCCCCccEE
Q 000128 127 HKDPTAISIPFRGIYEFPER-L-ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPS-SIGCLISLRTL 203 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp~~-~-~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~-~i~~L~~Lr~L 203 (2123)
+..+++|++++|.++.+++. + ++++|++|++++|.+. .+|++.|.++++|++|+|++|.++.+|. .|+++.+|++|
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence 57899999999999988764 3 8999999999999987 5777778999999999999999999875 68999999999
Q ss_pred EcCCCCCC-CC-ccccCCCCCcEEEccCCCCcc--cccccCCCCCccEEeccCCCCCcccChhhhCCCCCC----CEEEc
Q 000128 204 TLESCLLG-DV-ATIGDLKKLEILSLRHSDVEE--LPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRL----EELYM 275 (2123)
Q Consensus 204 ~L~~~~l~-~p-~~i~~L~~L~~L~L~~n~l~~--lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L----~~L~l 275 (2123)
++++|.++ .+ ..|+++++|++|++++|.++. +|..++.+++|++|++++|. +..++++.+..+.++ ..+++
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~l~~~~~~~~l 208 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDL 208 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCCEEEC
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-ccccccccccchhhhhhhhhhhhc
Confidence 99999998 44 569999999999999999884 57889999999999999998 777776656655544 36778
Q ss_pred cCcccccccccccccChhhhCCCCCCCEEEEecCCCCC-CChhh--hccccceeeeccCCccCCCCCcccceeeeccccc
Q 000128 276 GNSFTEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQV-MPQDL--LSVELERYRICIGDVWSWSGEHETSRRLKLSALN 352 (2123)
Q Consensus 276 ~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~-~~~~~--~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~ 352 (2123)
+.|.+... .........++.+++..|.... +.... ....++...+..+.... ...+.....
T Consensus 209 s~n~l~~i--------~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~----~~~l~~~~~---- 272 (635)
T 4g8a_A 209 SLNPMNFI--------QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN----EGNLEKFDK---- 272 (635)
T ss_dssp TTCCCCEE--------CTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTT----SCCCSCCCT----
T ss_pred ccCccccc--------CcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccc----ccccccccc----
Confidence 88777521 1122233345667776654321 11111 11222222221111000 000000000
Q ss_pred CccccchhHHHhccCCcEEecccccCccccccccCCCCCCCCccEEEeeccCCccEeeccccccCCCcCcccceeecccc
Q 000128 353 KCIYLGYGMQMLLKGIEDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLFLHNL 432 (2123)
Q Consensus 353 ~~~~~p~~i~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~f~~L~~L~l~~~ 432 (2123)
..+ .....+....+...............+..+.+++.+.+.++... .+. .......|+.|.+.++
T Consensus 273 ------~~~-~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~------~~~~~~~L~~L~l~~~ 338 (635)
T 4g8a_A 273 ------SAL-EGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIE-RVK------DFSYNFGWQHLELVNC 338 (635)
T ss_dssp ------TTT-GGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEE-ECG------GGGSCCCCSEEEEESC
T ss_pred ------ccc-ccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccc-ccc------ccccchhhhhhhcccc
Confidence 000 00122222222211100000000001234455666666554211 111 1123345566665553
Q ss_pred ccchhhhcCCCCcccCCCccEEEEecCCCCCCCCChhhhhhcCCCcEEEecccccchhhhccCCcccccccccccccccc
Q 000128 433 MRLEMVYRGQLTEHSFSKLRIIKVCQCDNLKHLFSFPMARNLLQLQKLKVSFCESLKLIVGKESSETHNVHEIINFTQLH 512 (2123)
Q Consensus 433 ~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~fp~L~ 512 (2123)
.. . .+....++.|+.+.+.+. .....+. ...+++|+.++++++....... ........++|+
T Consensus 339 ~~-~-----~~~~~~l~~L~~l~l~~n-~~~~~~~---~~~l~~L~~L~ls~n~l~~~~~--------~~~~~~~~~~L~ 400 (635)
T 4g8a_A 339 KF-G-----QFPTLKLKSLKRLTFTSN-KGGNAFS---EVDLPSLEFLDLSRNGLSFKGC--------CSQSDFGTISLK 400 (635)
T ss_dssp EE-S-----SCCCCBCTTCCEEEEESC-CSCCBCC---CCBCTTCCEEECCSSCCBEEEE--------CCHHHHSCSCCC
T ss_pred cc-c-----CcCcccchhhhhcccccc-cCCCCcc---cccccccccchhhccccccccc--------cccchhhhhhhh
Confidence 21 1 122334666777776663 2333332 2456777777776643211000 000111233444
Q ss_pred eeecccCccccccccccCCCCCCCccccccccccceecccCcccccccccccCCCccceeeccccccccccccccccccc
Q 000128 513 SLTLQCLPQLTSSGFDLERPLLSPTISATTLAFEEVIAEDDSDESLFNNKVIFPNLEKLKLSSINIEKIWHDQYPLMLNS 592 (2123)
Q Consensus 513 ~L~l~~~~~L~~l~~~~~~~~~~p~l~~~~~~~~~~i~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~ 592 (2123)
.+++....... + ......+++|+.+++.+++......... +.
T Consensus 401 ~L~~~~~~~~~-~---------------------------------~~~~~~l~~L~~l~l~~~~~~~~~~~~~----~~ 442 (635)
T 4g8a_A 401 YLDLSFNGVIT-M---------------------------------SSNFLGLEQLEHLDFQHSNLKQMSEFSV----FL 442 (635)
T ss_dssp EEECCSCSEEE-E---------------------------------CSCCTTCTTCCEEECTTSEEESTTSSCT----TT
T ss_pred hhhcccccccc-c---------------------------------cccccccccccchhhhhccccccccccc----cc
Confidence 44444322110 0 0011235666777776665444432221 23
Q ss_pred cccCcceEEEecCCCcccccchhhHhhhhccceEEEeecCCcceeeccCccccccccCCcceeeeeccCCCcccccccCC
Q 000128 593 CSQNLTNLTVETCSRLKFLFSYSMVDSLVRLQQLEIRKCESMEAVIDTTDIEINSVEFPSLHHLRIVDCPNLRSFISVNS 672 (2123)
Q Consensus 593 ~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~i~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~ 672 (2123)
.+++++.++++++ .+....+. ....+++|+.|++++|.....+. + ..+..+++|+.|++++| +++.++.
T Consensus 443 ~l~~l~~l~ls~n-~l~~~~~~-~~~~~~~L~~L~Ls~N~~~~~~~-~----~~~~~l~~L~~L~Ls~N-~L~~l~~--- 511 (635)
T 4g8a_A 443 SLRNLIYLDISHT-HTRVAFNG-IFNGLSSLEVLKMAGNSFQENFL-P----DIFTELRNLTFLDLSQC-QLEQLSP--- 511 (635)
T ss_dssp TCTTCCEEECTTS-CCEECCTT-TTTTCTTCCEEECTTCEEGGGEE-C----SCCTTCTTCCEEECTTS-CCCEECT---
T ss_pred ccccccccccccc-cccccccc-ccccchhhhhhhhhhcccccccC-c----hhhhhccccCEEECCCC-ccCCcCh---
Confidence 4666777777663 33433332 33456777777777765444331 1 22346677777777766 3444421
Q ss_pred cccccccCCCCCccccccccCccceeeeccccCcchhccccCCCCccCCccEEEeccCCcccccCCCcHHHHHhc-CCcc
Q 000128 673 SEEKILHTDTQPLFDEKLVLPRLEVLSIDMMDNMRKIWHHQLALNSFSKLKALEVTNCGKLANIFPANIIMRRRL-DRLE 751 (2123)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~Le~L~i~~c~~l~~i~~~~~~~~~l~~L~~L~i~~C~~L~~~~p~~~~~~~~l-~~L~ 751 (2123)
.....+++|++|+++++ +++.+. +..+..+++|+.|++++ +.+..+.|.. ++.+ ++|+
T Consensus 512 --------------~~f~~l~~L~~L~Ls~N-~l~~l~--~~~~~~l~~L~~L~Ls~-N~l~~~~~~~---l~~l~~~L~ 570 (635)
T 4g8a_A 512 --------------TAFNSLSSLQVLNMSHN-NFFSLD--TFPYKCLNSLQVLDYSL-NHIMTSKKQE---LQHFPSSLA 570 (635)
T ss_dssp --------------TTTTTCTTCCEEECTTS-CCCBCC--CGGGTTCTTCCEEECTT-SCCCBCCSSC---TTCCCTTCC
T ss_pred --------------HHHcCCCCCCEEECCCC-cCCCCC--hhHHhCCCCCCEEECCC-CcCCCCCHHH---HHhhhCcCC
Confidence 12236677888888775 555552 33455667888888888 4466655554 3444 6788
Q ss_pred EEEEecCC
Q 000128 752 YLKVDGCA 759 (2123)
Q Consensus 752 ~L~i~~C~ 759 (2123)
.|++++.+
T Consensus 571 ~L~L~~Np 578 (635)
T 4g8a_A 571 FLNLTQND 578 (635)
T ss_dssp EEECTTCC
T ss_pred EEEeeCCC
Confidence 88887744
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=6.6e-22 Score=263.85 Aligned_cols=154 Identities=18% Similarity=0.230 Sum_probs=91.6
Q ss_pred CCCccceeeccccccccccccccccccccccCcceEEEecCCCcccccch-hhHhhhhccceEEEeecCCcce-eeccCc
Q 000128 565 FPNLEKLKLSSINIEKIWHDQYPLMLNSCSQNLTNLTVETCSRLKFLFSY-SMVDSLVRLQQLEIRKCESMEA-VIDTTD 642 (2123)
Q Consensus 565 l~~L~~L~L~~~~l~~i~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~-~~~~~l~~L~~L~I~~C~~L~~-i~~~~~ 642 (2123)
+++|++|++++|.++...+..+ ..+++|+.|+++++ .++.++.. ..+..+++|+.|++++|. ++. + ..
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~-~~-- 421 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQGC-----STLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNS-LNSHA-YD-- 421 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTTTC-----CSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCC-SS--
T ss_pred CCCceEEECCCCccccchhhhh-----cccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCc-CCCcc-Ch--
Confidence 5667777777776665433222 24677777777773 45544321 124456777777777755 322 2 11
Q ss_pred cccccccCCcceeeeeccCCCcccccccCCcccccccCCCCCcccccccc-CccceeeeccccCcchhccccCCCCccCC
Q 000128 643 IEINSVEFPSLHHLRIVDCPNLRSFISVNSSEEKILHTDTQPLFDEKLVL-PRLEVLSIDMMDNMRKIWHHQLALNSFSK 721 (2123)
Q Consensus 643 ~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Le~L~i~~c~~l~~i~~~~~~~~~l~~ 721 (2123)
.....+++|+.|+++++.--..++ . .+ ++|+.|+++++ +++.++ .+...+++
T Consensus 422 --~~~~~l~~L~~L~l~~n~l~~~~~------------------~---~l~~~L~~L~L~~N-~l~~ip---~~~~~l~~ 474 (562)
T 3a79_B 422 --RTCAWAESILVLNLSSNMLTGSVF------------------R---CLPPKVKVLDLHNN-RIMSIP---KDVTHLQA 474 (562)
T ss_dssp --CCCCCCTTCCEEECCSSCCCGGGG------------------S---SCCTTCSEEECCSS-CCCCCC---TTTTSSCC
T ss_pred --hhhcCcccCCEEECCCCCCCcchh------------------h---hhcCcCCEEECCCC-cCcccC---hhhcCCCC
Confidence 123466777777777764322221 1 22 57888888876 666653 23336678
Q ss_pred ccEEEeccCCcccccCCCcHHHHHhcCCccEEEEecCC
Q 000128 722 LKALEVTNCGKLANIFPANIIMRRRLDRLEYLKVDGCA 759 (2123)
Q Consensus 722 L~~L~i~~C~~L~~~~p~~~~~~~~l~~L~~L~i~~C~ 759 (2123)
|+.|+++++ .++.+ |.. .+..+++|+.|++++++
T Consensus 475 L~~L~L~~N-~l~~l-~~~--~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 475 LQELNVASN-QLKSV-PDG--VFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CSEEECCSS-CCCCC-CTT--STTTCTTCCCEECCSCC
T ss_pred CCEEECCCC-CCCCC-CHH--HHhcCCCCCEEEecCCC
Confidence 888888884 45654 332 35678888888888865
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=2.1e-21 Score=258.99 Aligned_cols=431 Identities=18% Similarity=0.150 Sum_probs=262.3
Q ss_pred CceEEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCC-CcccCCCCCccEEEcCC
Q 000128 129 DPTAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSL-PSSIGCLISLRTLTLES 207 (2123)
Q Consensus 129 ~l~~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~l-p~~i~~L~~Lr~L~L~~ 207 (2123)
..++++++++++..+|..+ .+++++|++++|.+.+ ++...|.++++|++|++++|.++.+ |..|+++++|++|++++
T Consensus 32 ~~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISE-LRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp -CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCC-CCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCcEEEcCCCCCccCCCCC-CCCcCEEECCCCCccc-cChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 4489999999999999766 3899999999999884 5544568999999999999999977 67899999999999999
Q ss_pred CCCC-CCccccCCCCCcEEEccCCCCcccc--cccCCCCCccEEeccCCCCCcccChhhhCCCCCC--CEEEccCccc--
Q 000128 208 CLLG-DVATIGDLKKLEILSLRHSDVEELP--GEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRL--EELYMGNSFT-- 280 (2123)
Q Consensus 208 ~~l~-~p~~i~~L~~L~~L~L~~n~l~~lP--~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L--~~L~l~~n~~-- 280 (2123)
|.++ .|.. .+.+|++|++++|+++.+| ..++++++|++|++++|. +.... ++.+++| ++|++++|.+
T Consensus 110 N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~---~~~l~~L~L~~L~L~~n~l~~ 183 (562)
T 3a79_B 110 NRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLD---LLPVAHLHLSCILLDLVSYHI 183 (562)
T ss_dssp SCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTT---TGGGTTSCEEEEEEEESSCCC
T ss_pred CcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-cccCc---hhhhhhceeeEEEeecccccc
Confidence 9999 4544 8999999999999999764 789999999999999998 55432 5556666 9999999887
Q ss_pred ccccccccc-------------------cChhhhCCCCCCCEEEEecCCCC--CCChhh----hccccceeeeccCC---
Q 000128 281 EWEIEGQSN-------------------ASLVELKQLSRLTTLEVHIPDAQ--VMPQDL----LSVELERYRICIGD--- 332 (2123)
Q Consensus 281 ~~~~~~~~~-------------------~~~~~l~~L~~L~~L~l~~~~~~--~~~~~~----~~~~L~~l~i~~~~--- 332 (2123)
.+...+... .....+.++++|+.|+++.|... .++... ...+++.+.+....
T Consensus 184 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~ 263 (562)
T 3a79_B 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263 (562)
T ss_dssp CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECH
T ss_pred cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcH
Confidence 422111000 00111234455566666655310 000000 11222222222111
Q ss_pred -----ccCCCCCcccceeeecccccCccccchhHHH-hccCCcEEecccccCccccccc--cCCCCCCCCccEEEeeccC
Q 000128 333 -----VWSWSGEHETSRRLKLSALNKCIYLGYGMQM-LLKGIEDLYLDELNGFQNALLE--LEDGEVFPLLKHLHVQNVC 404 (2123)
Q Consensus 333 -----~~~~~~~~~~L~~L~L~~~~~~~~~p~~i~~-~l~~L~~L~L~~~~~~~~~~~~--l~~~~~l~~L~~L~L~~~~ 404 (2123)
...+ ....+++.|+++++.-...+|.++.. ...+++.|.+.++....-.+|. +...-.-++|++|++.+|.
T Consensus 264 ~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~ 342 (562)
T 3a79_B 264 KCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP 342 (562)
T ss_dssp HHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSC
T ss_pred HHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCC
Confidence 0000 01126677777654433344544321 0144555544433221111110 0000012457777777763
Q ss_pred CccEeeccccccCCCcCcccceeeccccccchhhhcCCCCcccCCCccEEEEecCCCCCCCCChh-hhhhcCCCcEEEec
Q 000128 405 EILYIVNLVGWEHCNAFPLLESLFLHNLMRLEMVYRGQLTEHSFSKLRIIKVCQCDNLKHLFSFP-MARNLLQLQKLKVS 483 (2123)
Q Consensus 405 ~~~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~-~~~~L~~L~~L~l~ 483 (2123)
... + .....+++|++|++.+..--... +...+.+++|++|++.++ +++.++..+ .+..+++|++|+++
T Consensus 343 ~~~-~------~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~ 411 (562)
T 3a79_B 343 FIH-M------VCPPSPSSFTFLNFTQNVFTDSV---FQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVS 411 (562)
T ss_dssp CCC-C------CCCSSCCCCCEEECCSSCCCTTT---TTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECT
T ss_pred ccc-c------cCccCCCCceEEECCCCccccch---hhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECC
Confidence 211 0 01145677777777764321111 222356788888888884 677665422 35778888888888
Q ss_pred ccccchhhhccCCcccccccccccccccceeecccCccccccccccCCCCCCCccccccccccceecccCcccccccccc
Q 000128 484 FCESLKLIVGKESSETHNVHEIINFTQLHSLTLQCLPQLTSSGFDLERPLLSPTISATTLAFEEVIAEDDSDESLFNNKV 563 (2123)
Q Consensus 484 ~c~~l~~i~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~l~~~~~~~~~~p~l~~~~~~~~~~i~~~~~~~~~~~~~~ 563 (2123)
++.....++.. ....+++|+.|+++++. ++.. ...
T Consensus 412 ~N~l~~~~~~~---------~~~~l~~L~~L~l~~n~-l~~~-----------------------------------~~~ 446 (562)
T 3a79_B 412 LNSLNSHAYDR---------TCAWAESILVLNLSSNM-LTGS-----------------------------------VFR 446 (562)
T ss_dssp TSCCBSCCSSC---------CCCCCTTCCEEECCSSC-CCGG-----------------------------------GGS
T ss_pred CCcCCCccChh---------hhcCcccCCEEECCCCC-CCcc-----------------------------------hhh
Confidence 87533223311 12345677777777653 1111 001
Q ss_pred cC-CCccceeeccccccccccccccccccccccCcceEEEecCCCcccccchhhHhhhhccceEEEeecC
Q 000128 564 IF-PNLEKLKLSSINIEKIWHDQYPLMLNSCSQNLTNLTVETCSRLKFLFSYSMVDSLVRLQQLEIRKCE 632 (2123)
Q Consensus 564 ~l-~~L~~L~L~~~~l~~i~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~I~~C~ 632 (2123)
.+ ++|+.|++++|+++.+....+ .+++|+.|++++ +.++.+++. .+..+++|+.|++++++
T Consensus 447 ~l~~~L~~L~L~~N~l~~ip~~~~------~l~~L~~L~L~~-N~l~~l~~~-~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 447 CLPPKVKVLDLHNNRIMSIPKDVT------HLQALQELNVAS-NQLKSVPDG-VFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp SCCTTCSEEECCSSCCCCCCTTTT------SSCCCSEEECCS-SCCCCCCTT-STTTCTTCCCEECCSCC
T ss_pred hhcCcCCEEECCCCcCcccChhhc------CCCCCCEEECCC-CCCCCCCHH-HHhcCCCCCEEEecCCC
Confidence 12 588888888888886644322 478888888888 456676553 35568888888888876
No 25
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=2.2e-21 Score=249.43 Aligned_cols=288 Identities=15% Similarity=0.105 Sum_probs=200.1
Q ss_pred CCCceEEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcC
Q 000128 127 HKDPTAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLE 206 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~ 206 (2123)
++++++|++++|.+..+|....+++|++|++++|.+.+ +| +..+++|++|++++|.++.+| ++++++|++|+++
T Consensus 41 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCD 114 (457)
T ss_dssp HTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECC
T ss_pred cCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCceee--cCCCCcCCEEECC
Confidence 56888888888888877754478888888888888774 44 478888888888888888775 7888888888888
Q ss_pred CCCCCCCccccCCCCCcEEEccCCCCcccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCccccccccc
Q 000128 207 SCLLGDVATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEG 286 (2123)
Q Consensus 207 ~~~l~~p~~i~~L~~L~~L~L~~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~ 286 (2123)
+|.++..+ ++.+++|++|++++|+++.+| ++++++|++|++++|..++.++ ++.+++|++|++++|.+.+
T Consensus 115 ~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~---- 184 (457)
T 3bz5_A 115 TNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE---- 184 (457)
T ss_dssp SSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC----
T ss_pred CCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce----
Confidence 88887443 788888888888888888874 7788888888888886566663 6788888888888887762
Q ss_pred ccccChhhhCCCCCCCEEEEecCCCCCCChhhhccccceeeeccCCccCCCCCcccceeeecccccCccccchhHHHhcc
Q 000128 287 QSNASLVELKQLSRLTTLEVHIPDAQVMPQDLLSVELERYRICIGDVWSWSGEHETSRRLKLSALNKCIYLGYGMQMLLK 366 (2123)
Q Consensus 287 ~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~p~~i~~~l~ 366 (2123)
.+ ++.+++|+.|+++.|.+..++ +. .++
T Consensus 185 ----l~--l~~l~~L~~L~l~~N~l~~~~--------------------------------l~--------------~l~ 212 (457)
T 3bz5_A 185 ----LD--VSQNKLLNRLNCDTNNITKLD--------------------------------LN--------------QNI 212 (457)
T ss_dssp ----CC--CTTCTTCCEEECCSSCCSCCC--------------------------------CT--------------TCT
T ss_pred ----ec--cccCCCCCEEECcCCcCCeec--------------------------------cc--------------cCC
Confidence 11 677788888888877665431 00 146
Q ss_pred CCcEEecccccCccccccccCCCCCCCCccEEEeeccCCccEeeccccccCCCcCcccceeeccccccchhhhcCCCCcc
Q 000128 367 GIEDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLFLHNLMRLEMVYRGQLTEH 446 (2123)
Q Consensus 367 ~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~ 446 (2123)
+|+.|+++++... . +| ++.+++|+.|++++|... .+ ....+++|+.|.+..
T Consensus 213 ~L~~L~Ls~N~l~-~-ip----~~~l~~L~~L~l~~N~l~-~~-------~~~~l~~L~~L~l~~--------------- 263 (457)
T 3bz5_A 213 QLTFLDCSSNKLT-E-ID----VTPLTQLTYFDCSVNPLT-EL-------DVSTLSKLTTLHCIQ--------------- 263 (457)
T ss_dssp TCSEEECCSSCCS-C-CC----CTTCTTCSEEECCSSCCS-CC-------CCTTCTTCCEEECTT---------------
T ss_pred CCCEEECcCCccc-c-cC----ccccCCCCEEEeeCCcCC-Cc-------CHHHCCCCCEEeccC---------------
Confidence 6777777775432 2 22 477888888888887322 11 234566666666543
Q ss_pred cCCCccEEEEecCCCCCCCCChhhhhhcCCCcEEEecccccchhhhccCCcccccccccccccccceeecccCccccccc
Q 000128 447 SFSKLRIIKVCQCDNLKHLFSFPMARNLLQLQKLKVSFCESLKLIVGKESSETHNVHEIINFTQLHSLTLQCLPQLTSSG 526 (2123)
Q Consensus 447 ~~~~L~~L~l~~c~~L~~lp~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~l~ 526 (2123)
.+|+.|++.+|..+..+|. ..+++|+.|++++|..++.++. ..++|+.|+++++++|+.+.
T Consensus 264 --n~L~~L~l~~n~~~~~~~~----~~l~~L~~L~Ls~n~~l~~l~~-------------~~~~L~~L~l~~~~~L~~L~ 324 (457)
T 3bz5_A 264 --TDLLEIDLTHNTQLIYFQA----EGCRKIKELDVTHNTQLYLLDC-------------QAAGITELDLSQNPKLVYLY 324 (457)
T ss_dssp --CCCSCCCCTTCTTCCEEEC----TTCTTCCCCCCTTCTTCCEEEC-------------TTCCCSCCCCTTCTTCCEEE
T ss_pred --CCCCEEECCCCccCCcccc----cccccCCEEECCCCcccceecc-------------CCCcceEechhhcccCCEEE
Confidence 3455666666665555543 5667778888887776655542 23556666666555555554
Q ss_pred cccC
Q 000128 527 FDLE 530 (2123)
Q Consensus 527 ~~~~ 530 (2123)
+..|
T Consensus 325 L~~N 328 (457)
T 3bz5_A 325 LNNT 328 (457)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 4443
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.86 E-value=1.3e-20 Score=245.01 Aligned_cols=340 Identities=16% Similarity=0.156 Sum_probs=247.5
Q ss_pred CCCceEEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcC
Q 000128 127 HKDPTAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLE 206 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~ 206 (2123)
+.+++.|++.++.+..+|....+++|++|++++|.+.+ ++. +.++++|++|++++|.+..++. ++++++|++|+++
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD-ITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLF 120 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCCccCC-chh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECC
Confidence 46899999999999988876689999999999999874 454 6899999999999999998887 9999999999999
Q ss_pred CCCCCCCccccCCCCCcEEEccCCCCcccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCccccccccc
Q 000128 207 SCLLGDVATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEG 286 (2123)
Q Consensus 207 ~~~l~~p~~i~~L~~L~~L~L~~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~ 286 (2123)
+|.++..+.++++++|++|++++|.+..+| .++++++|++|++++ . +..+++ ++++++|++|++++|.+..
T Consensus 121 ~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~-~-~~~~~~--~~~l~~L~~L~l~~n~l~~---- 191 (466)
T 1o6v_A 121 NNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN-Q-VTDLKP--LANLTTLERLDISSNKVSD---- 191 (466)
T ss_dssp SSCCCCCGGGTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE-S-CCCCGG--GTTCTTCCEEECCSSCCCC----
T ss_pred CCCCCCChHHcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC-c-ccCchh--hccCCCCCEEECcCCcCCC----
Confidence 999995555999999999999999999887 489999999999974 3 455554 8999999999999998761
Q ss_pred ccccChhhhCCCCCCCEEEEecCCCCCCChhhhccccceeeeccCCc--cCCCCCcccceeeecccccCccccchhHHHh
Q 000128 287 QSNASLVELKQLSRLTTLEVHIPDAQVMPQDLLSVELERYRICIGDV--WSWSGEHETSRRLKLSALNKCIYLGYGMQML 364 (2123)
Q Consensus 287 ~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~p~~i~~~ 364 (2123)
...+.++++|+.|+++.|.+..++......+|+.+.+..+.. ......+++|+.|+++++.-. ..+. + ..
T Consensus 192 -----~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~-~~~~-~-~~ 263 (466)
T 1o6v_A 192 -----ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQIS-NLAP-L-SG 263 (466)
T ss_dssp -----CGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC-CCGG-G-TT
T ss_pred -----ChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccc-cchh-h-hc
Confidence 345888999999999999988876655667788887765542 223345567777777744322 2222 2 23
Q ss_pred ccCCcEEecccccCccccccccCCCCCCCCccEEEeeccCCccEeeccccccCCCcCcccceeeccccccchhhhcCCCC
Q 000128 365 LKGIEDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLFLHNLMRLEMVYRGQLT 444 (2123)
Q Consensus 365 l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~ 444 (2123)
+++|+.|+++++... . .+. +..+++|++|++.+|.. ..++ ....+++|+.|+++++. +..+ .+
T Consensus 264 l~~L~~L~l~~n~l~-~-~~~---~~~l~~L~~L~L~~n~l-~~~~------~~~~l~~L~~L~L~~n~-l~~~----~~ 326 (466)
T 1o6v_A 264 LTKLTELKLGANQIS-N-ISP---LAGLTALTNLELNENQL-EDIS------PISNLKNLTYLTLYFNN-ISDI----SP 326 (466)
T ss_dssp CTTCSEEECCSSCCC-C-CGG---GTTCTTCSEEECCSSCC-SCCG------GGGGCTTCSEEECCSSC-CSCC----GG
T ss_pred CCCCCEEECCCCccC-c-ccc---ccCCCccCeEEcCCCcc-cCch------hhcCCCCCCEEECcCCc-CCCc----hh
Confidence 577788888775432 2 222 36777888888877632 2221 13467777777777652 2222 12
Q ss_pred cccCCCccEEEEecCCCCCCCCChhhhhhcCCCcEEEecccccchhhhccCCcccccccccccccccceeecccCc
Q 000128 445 EHSFSKLRIIKVCQCDNLKHLFSFPMARNLLQLQKLKVSFCESLKLIVGKESSETHNVHEIINFTQLHSLTLQCLP 520 (2123)
Q Consensus 445 ~~~~~~L~~L~l~~c~~L~~lp~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~fp~L~~L~l~~~~ 520 (2123)
.+.+++|++|++.+| +++.++ .+..+++|+.|++++|.. ..+.. ...+++|+.|++++++
T Consensus 327 ~~~l~~L~~L~l~~n-~l~~~~---~l~~l~~L~~L~l~~n~l-~~~~~-----------~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 327 VSSLTKLQRLFFYNN-KVSDVS---SLANLTNINWLSAGHNQI-SDLTP-----------LANLTRITQLGLNDQA 386 (466)
T ss_dssp GGGCTTCCEEECCSS-CCCCCG---GGTTCTTCCEEECCSSCC-CBCGG-----------GTTCTTCCEEECCCEE
T ss_pred hccCccCCEeECCCC-ccCCch---hhccCCCCCEEeCCCCcc-Cccch-----------hhcCCCCCEEeccCCc
Confidence 456778888888775 566653 356777888888877643 22221 2345677777776653
No 27
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=2.8e-20 Score=236.05 Aligned_cols=306 Identities=15% Similarity=0.182 Sum_probs=215.6
Q ss_pred CCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCC-cccCCCCCccEEEcCCCCCC-C-CccccCCCCC
Q 000128 146 RLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLP-SSIGCLISLRTLTLESCLLG-D-VATIGDLKKL 222 (2123)
Q Consensus 146 ~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp-~~i~~L~~Lr~L~L~~~~l~-~-p~~i~~L~~L 222 (2123)
...+++++.|++++|.+. .+|..+|..+++|++|++++|.++.+| ..++.+++|++|++++|.++ . +..++++++|
T Consensus 41 ~~~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 41 DITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp SGGGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 346788888888888765 678877788888999999988888765 47888888999999888887 3 4668888889
Q ss_pred cEEEccCCCCcccccc-cCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccccccccccccChhhhCCCCCC
Q 000128 223 EILSLRHSDVEELPGE-IGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRL 301 (2123)
Q Consensus 223 ~~L~L~~n~l~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L 301 (2123)
++|++++|+++.+|.. ++++++|++|++++|. +..+++..++++++|++|++++|.+.. ..++.+++|
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~----------~~~~~l~~L 188 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH----------VDLSLIPSL 188 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSB----------CCGGGCTTC
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCc----------ccccccccc
Confidence 9999998888888877 4788889999998888 677766668888889999988887762 135667888
Q ss_pred CEEEEecCCCCCCChhhhccccceeeeccCCccCCCCCcccceeeecccccCccccchhHHHhccCCcEEecccccCccc
Q 000128 302 TTLEVHIPDAQVMPQDLLSVELERYRICIGDVWSWSGEHETSRRLKLSALNKCIYLGYGMQMLLKGIEDLYLDELNGFQN 381 (2123)
Q Consensus 302 ~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~p~~i~~~l~~L~~L~L~~~~~~~~ 381 (2123)
+.|+++.|.+..++. ...++.+++++.. ...+|.. .+++|+.|+++++... +
T Consensus 189 ~~L~l~~n~l~~~~~-----------------------~~~L~~L~l~~n~-l~~~~~~---~~~~L~~L~l~~n~l~-~ 240 (390)
T 3o6n_A 189 FHANVSYNLLSTLAI-----------------------PIAVEELDASHNS-INVVRGP---VNVELTILKLQHNNLT-D 240 (390)
T ss_dssp SEEECCSSCCSEEEC-----------------------CSSCSEEECCSSC-CCEEECC---CCSSCCEEECCSSCCC-C
T ss_pred ceeecccccccccCC-----------------------CCcceEEECCCCe-eeecccc---ccccccEEECCCCCCc-c
Confidence 888888876654321 1134444444221 1111221 1367888888875543 2
Q ss_pred cccccCCCCCCCCccEEEeeccCCccEeeccccccCCCcCcccceeeccccccchhhhcCCCCcccCCCccEEEEecCCC
Q 000128 382 ALLELEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLFLHNLMRLEMVYRGQLTEHSFSKLRIIKVCQCDN 461 (2123)
Q Consensus 382 ~~~~l~~~~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~ 461 (2123)
.+. ++.+++|++|++++|......+. ....+++|+.|++.+. .+..+ +...+.+++|++|++++| +
T Consensus 241 -~~~---l~~l~~L~~L~Ls~n~l~~~~~~-----~~~~l~~L~~L~L~~n-~l~~~---~~~~~~l~~L~~L~L~~n-~ 306 (390)
T 3o6n_A 241 -TAW---LLNYPGLVEVDLSYNELEKIMYH-----PFVKMQRLERLYISNN-RLVAL---NLYGQPIPTLKVLDLSHN-H 306 (390)
T ss_dssp -CGG---GGGCTTCSEEECCSSCCCEEESG-----GGTTCSSCCEEECCSS-CCCEE---ECSSSCCTTCCEEECCSS-C
T ss_pred -cHH---HcCCCCccEEECCCCcCCCcChh-----HccccccCCEEECCCC-cCccc---CcccCCCCCCCEEECCCC-c
Confidence 233 47788888888888743322222 2345778888888774 34443 222356889999999986 6
Q ss_pred CCCCCChhhhhhcCCCcEEEecccccchhhhccCCcccccccccccccccceeecccCc
Q 000128 462 LKHLFSFPMARNLLQLQKLKVSFCESLKLIVGKESSETHNVHEIINFTQLHSLTLQCLP 520 (2123)
Q Consensus 462 L~~lp~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~fp~L~~L~l~~~~ 520 (2123)
++.+|+ .+..+++|++|+++++. +..+. ...+++|+.|++++++
T Consensus 307 l~~~~~--~~~~l~~L~~L~L~~N~-i~~~~------------~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 307 LLHVER--NQPQFDRLENLYLDHNS-IVTLK------------LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CCCCGG--GHHHHTTCSEEECCSSC-CCCCC------------CCTTCCCSEEECCSSC
T ss_pred ceecCc--cccccCcCCEEECCCCc-cceeC------------chhhccCCEEEcCCCC
Confidence 777775 56788999999999875 33322 2357788888887764
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.85 E-value=6.9e-20 Score=238.00 Aligned_cols=343 Identities=17% Similarity=0.216 Sum_probs=227.6
Q ss_pred CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcCCCCCCCCccccCCCCCcEEEc
Q 000128 148 ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLGDVATIGDLKKLEILSL 227 (2123)
Q Consensus 148 ~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~~l~~p~~i~~L~~L~~L~L 227 (2123)
.+++++.|++.++.+. .+|. +..+++|++|++++|.++.+|. ++++++|++|++++|.+.....++++++|++|++
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L 119 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTL 119 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred HhccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEEC
Confidence 4678999999998876 4664 5789999999999999999887 9999999999999999984444999999999999
Q ss_pred cCCCCcccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccccccccccccChhhhCCCCCCCEEEEe
Q 000128 228 RHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEVH 307 (2123)
Q Consensus 228 ~~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 307 (2123)
++|+++.+|. ++++++|++|++++|. +..++. ++++++|++|++.+ .+. ....++++++|+.|+++
T Consensus 120 ~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~-~~~---------~~~~~~~l~~L~~L~l~ 185 (466)
T 1o6v_A 120 FNNQITDIDP-LKNLTNLNRLELSSNT-ISDISA--LSGLTSLQQLSFGN-QVT---------DLKPLANLTTLERLDIS 185 (466)
T ss_dssp CSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG--GTTCTTCSEEEEEE-SCC---------CCGGGTTCTTCCEEECC
T ss_pred CCCCCCCChH-HcCCCCCCEEECCCCc-cCCChh--hccCCcccEeecCC-ccc---------CchhhccCCCCCEEECc
Confidence 9999999876 9999999999999998 777774 89999999999864 332 13448899999999999
Q ss_pred cCCCCCCChhhhccccceeeeccCCccCCCCCcccceeeecccccCccccchhHHHhccCCcEEecccccCccccccccC
Q 000128 308 IPDAQVMPQDLLSVELERYRICIGDVWSWSGEHETSRRLKLSALNKCIYLGYGMQMLLKGIEDLYLDELNGFQNALLELE 387 (2123)
Q Consensus 308 ~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~p~~i~~~l~~L~~L~L~~~~~~~~~~~~l~ 387 (2123)
.|.+..++.-... ++|+.|++++..-. ..+. ...+++|+.|+++++... . ++.
T Consensus 186 ~n~l~~~~~l~~l--------------------~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~-~-~~~-- 238 (466)
T 1o6v_A 186 SNKVSDISVLAKL--------------------TNLESLIATNNQIS-DITP--LGILTNLDELSLNGNQLK-D-IGT-- 238 (466)
T ss_dssp SSCCCCCGGGGGC--------------------TTCSEEECCSSCCC-CCGG--GGGCTTCCEEECCSSCCC-C-CGG--
T ss_pred CCcCCCChhhccC--------------------CCCCEEEecCCccc-cccc--ccccCCCCEEECCCCCcc-c-chh--
Confidence 9887765321111 22333333321111 0111 111344555555443221 1 112
Q ss_pred CCCCCCCccEEEeeccCCccEeeccccccCCCcCcccceeeccccccchhhhcCCCCcccCCCccEEEEecCCCCCCCCC
Q 000128 388 DGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLFLHNLMRLEMVYRGQLTEHSFSKLRIIKVCQCDNLKHLFS 467 (2123)
Q Consensus 388 ~~~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~lp~ 467 (2123)
+..+++|++|++.+|. +..+ .+...+++|++|++.+| .++.+++
T Consensus 239 -l~~l~~L~~L~l~~n~------------------------------l~~~----~~~~~l~~L~~L~l~~n-~l~~~~~ 282 (466)
T 1o6v_A 239 -LASLTNLTDLDLANNQ------------------------------ISNL----APLSGLTKLTELKLGAN-QISNISP 282 (466)
T ss_dssp -GGGCTTCSEEECCSSC------------------------------CCCC----GGGTTCTTCSEEECCSS-CCCCCGG
T ss_pred -hhcCCCCCEEECCCCc------------------------------cccc----hhhhcCCCCCEEECCCC-ccCcccc
Confidence 2444455555554441 1111 01334667777777764 4555543
Q ss_pred hhhhhhcCCCcEEEecccccchhhhccCCcccccccccccccccceeecccCccccccccccCCCCCCCccccccccccc
Q 000128 468 FPMARNLLQLQKLKVSFCESLKLIVGKESSETHNVHEIINFTQLHSLTLQCLPQLTSSGFDLERPLLSPTISATTLAFEE 547 (2123)
Q Consensus 468 ~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~l~~~~~~~~~~p~l~~~~~~~~~ 547 (2123)
+..+++|++|++++|. ++.+.. ...+++|+.|+++++. +..+ +.
T Consensus 283 ---~~~l~~L~~L~L~~n~-l~~~~~-----------~~~l~~L~~L~L~~n~-l~~~----------~~---------- 326 (466)
T 1o6v_A 283 ---LAGLTALTNLELNENQ-LEDISP-----------ISNLKNLTYLTLYFNN-ISDI----------SP---------- 326 (466)
T ss_dssp ---GTTCTTCSEEECCSSC-CSCCGG-----------GGGCTTCSEEECCSSC-CSCC----------GG----------
T ss_pred ---ccCCCccCeEEcCCCc-ccCchh-----------hcCCCCCCEEECcCCc-CCCc----------hh----------
Confidence 5667777777777763 322221 2345666666666652 2222 00
Q ss_pred eecccCcccccccccccCCCccceeeccccccccccccccccccccccCcceEEEecCCCcccccchhhHhhhhccceEE
Q 000128 548 VIAEDDSDESLFNNKVIFPNLEKLKLSSINIEKIWHDQYPLMLNSCSQNLTNLTVETCSRLKFLFSYSMVDSLVRLQQLE 627 (2123)
Q Consensus 548 ~i~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~ 627 (2123)
...+++|++|++++|.++.+. . ...+++|+.|++++|. +...++ ...+++|+.|+
T Consensus 327 --------------~~~l~~L~~L~l~~n~l~~~~--~-----l~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~ 381 (466)
T 1o6v_A 327 --------------VSSLTKLQRLFFYNNKVSDVS--S-----LANLTNINWLSAGHNQ-ISDLTP---LANLTRITQLG 381 (466)
T ss_dssp --------------GGGCTTCCEEECCSSCCCCCG--G-----GTTCTTCCEEECCSSC-CCBCGG---GTTCTTCCEEE
T ss_pred --------------hccCccCCEeECCCCccCCch--h-----hccCCCCCEEeCCCCc-cCccch---hhcCCCCCEEe
Confidence 123688888888888777652 1 2357888999988864 555544 45688899999
Q ss_pred EeecC
Q 000128 628 IRKCE 632 (2123)
Q Consensus 628 I~~C~ 632 (2123)
+++|+
T Consensus 382 l~~n~ 386 (466)
T 1o6v_A 382 LNDQA 386 (466)
T ss_dssp CCCEE
T ss_pred ccCCc
Confidence 98876
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.85 E-value=1.4e-20 Score=241.61 Aligned_cols=146 Identities=23% Similarity=0.156 Sum_probs=66.7
Q ss_pred CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCC-CCCcccCCCCCc-------------cEEEcCCCCCCCC
Q 000128 148 ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFP-SLPSSIGCLISL-------------RTLTLESCLLGDV 213 (2123)
Q Consensus 148 ~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~-~lp~~i~~L~~L-------------r~L~L~~~~l~~p 213 (2123)
..++|++|++++|.+ +.+|.++ +++++|++|++++|.+. .+|.+++++.+| ++|++++|.++..
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i-~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l 86 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEA-ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL 86 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC
T ss_pred ccccchhhhcccCch-hhCChhH-hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC
Confidence 445556666666555 4555554 56666666666666555 556666655543 6666666665522
Q ss_pred ccccCCCCCcEEEccCCCCcccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccccccccccccChh
Q 000128 214 ATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLV 293 (2123)
Q Consensus 214 ~~i~~L~~L~~L~L~~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~ 293 (2123)
+.+ ..+|++|++++|.++.+|.. +.+|++|++++|. +..+|.. .++|++|++++|.+.+ .+
T Consensus 87 p~~--~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~-l~~l~~~----~~~L~~L~L~~n~l~~--------lp- 147 (454)
T 1jl5_A 87 PEL--PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN-LKALSDL----PPLLEYLGVSNNQLEK--------LP- 147 (454)
T ss_dssp CSC--CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC-CSCCCSC----CTTCCEEECCSSCCSS--------CC-
T ss_pred CCC--cCCCCEEEccCCcCCccccc---cCCCcEEECCCCc-cCcccCC----CCCCCEEECcCCCCCC--------Cc-
Confidence 221 24566666666666666543 2556666666665 4444431 1466666666665541 12
Q ss_pred hhCCCCCCCEEEEecCCCCCC
Q 000128 294 ELKQLSRLTTLEVHIPDAQVM 314 (2123)
Q Consensus 294 ~l~~L~~L~~L~l~~~~~~~~ 314 (2123)
+++++++|++|+++.|.+..+
T Consensus 148 ~~~~l~~L~~L~l~~N~l~~l 168 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNNSLKKL 168 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSCC
T ss_pred ccCCCCCCCEEECCCCcCccc
Confidence 356666666666666555443
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.85 E-value=3e-20 Score=241.50 Aligned_cols=360 Identities=17% Similarity=0.172 Sum_probs=230.1
Q ss_pred CCCceEEEccCCCCccC-CCCC-CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCC-CcccCCCCCccEE
Q 000128 127 HKDPTAISIPFRGIYEF-PERL-ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSL-PSSIGCLISLRTL 203 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~l-p~~~-~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~l-p~~i~~L~~Lr~L 203 (2123)
++++++|++++|.+..+ |..+ ++++|++|++++|.+.+.++...|.++++|++|++++|.++.+ |..++++++|++|
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 46788999998888866 4334 7888999999988887677777678889999999999988865 7788889999999
Q ss_pred EcCCCCCCC--Ccc--ccCCCCCcEEEccCCCCccc-ccc-cCCCCCccEEeccCCCCCcccChhhhCCC--CCCCEEEc
Q 000128 204 TLESCLLGD--VAT--IGDLKKLEILSLRHSDVEEL-PGE-IGQLTRLKLLDLSNCMKLKVIRPNVISSL--SRLEELYM 275 (2123)
Q Consensus 204 ~L~~~~l~~--p~~--i~~L~~L~~L~L~~n~l~~l-P~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L--~~L~~L~l 275 (2123)
++++|.++. +.. ++.+.+|++|++++|++..+ |.. ++++++|++|++++|. +..+++..++.+ .+|+.|++
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEEC
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhhhcccccccccccc
Confidence 999988873 443 88888999999999988876 544 7888999999998888 555554446655 67888888
Q ss_pred cCcccccccccc-cccChhhhCCCCCCCEEEEecCCCCCCChhh-----hccccceeeeccCCccCCCCCcccceeeecc
Q 000128 276 GNSFTEWEIEGQ-SNASLVELKQLSRLTTLEVHIPDAQVMPQDL-----LSVELERYRICIGDVWSWSGEHETSRRLKLS 349 (2123)
Q Consensus 276 ~~n~~~~~~~~~-~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~-----~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~ 349 (2123)
++|.+....... .......+..+++|+.|+++.|.+....... ...+++.+.+..............+....
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-- 265 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD-- 265 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCC--
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCc--
Confidence 888776211000 0000122445678888888888776432222 12455555554332111000000000000
Q ss_pred cccCccccchhHHH-hccCCcEEecccccCccccccccCCCCCCCCccEEEeeccCCccEeeccccccCCCcCcccceee
Q 000128 350 ALNKCIYLGYGMQM-LLKGIEDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLF 428 (2123)
Q Consensus 350 ~~~~~~~~p~~i~~-~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~f~~L~~L~ 428 (2123)
+..+.. ..++|+.|+++++... ...+. .++.+++|++|++++|... .++. .....+++|+.|+
T Consensus 266 --------~~~~~~~~~~~L~~L~l~~n~l~-~~~~~--~~~~l~~L~~L~Ls~n~l~-~~~~----~~~~~l~~L~~L~ 329 (455)
T 3v47_A 266 --------NFTFKGLEASGVKTCDLSKSKIF-ALLKS--VFSHFTDLEQLTLAQNEIN-KIDD----NAFWGLTHLLKLN 329 (455)
T ss_dssp --------TTTTGGGTTSCCCEEECCSSCCC-EECTT--TTTTCTTCCEEECTTSCCC-EECT----TTTTTCTTCCEEE
T ss_pred --------ccccccccccCceEEEecCcccc-ccchh--hcccCCCCCEEECCCCccc-ccCh----hHhcCcccCCEEE
Confidence 000111 1357888888875543 33332 2477888888888877433 2221 1234577888888
Q ss_pred ccccccchhhhcCCCCcccCCCccEEEEecCCCCCCCCChhhhhhcCCCcEEEecccccchhhhccCCcccccccccccc
Q 000128 429 LHNLMRLEMVYRGQLTEHSFSKLRIIKVCQCDNLKHLFSFPMARNLLQLQKLKVSFCESLKLIVGKESSETHNVHEIINF 508 (2123)
Q Consensus 429 l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~f 508 (2123)
+++.. +..+. +...+.+++|++|++++| +++.+++ ..+..+++|++|+++++ .++.++.. ....+
T Consensus 330 Ls~N~-l~~~~--~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~~---------~~~~l 394 (455)
T 3v47_A 330 LSQNF-LGSID--SRMFENLDKLEVLDLSYN-HIRALGD-QSFLGLPNLKELALDTN-QLKSVPDG---------IFDRL 394 (455)
T ss_dssp CCSSC-CCEEC--GGGGTTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSS-CCSCCCTT---------TTTTC
T ss_pred CCCCc-cCCcC--hhHhcCcccCCEEECCCC-cccccCh-hhccccccccEEECCCC-ccccCCHh---------HhccC
Confidence 87642 33221 112345788888888885 5666644 35677888888888885 34444321 12356
Q ss_pred cccceeecccCc
Q 000128 509 TQLHSLTLQCLP 520 (2123)
Q Consensus 509 p~L~~L~l~~~~ 520 (2123)
++|+.|++++++
T Consensus 395 ~~L~~L~l~~N~ 406 (455)
T 3v47_A 395 TSLQKIWLHTNP 406 (455)
T ss_dssp TTCCEEECCSSC
T ss_pred CcccEEEccCCC
Confidence 788888888765
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.84 E-value=8.1e-20 Score=237.45 Aligned_cols=310 Identities=16% Similarity=0.098 Sum_probs=202.7
Q ss_pred eEEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCC-CC-CcccCCCCCccEEEcCCC
Q 000128 131 TAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFP-SL-PSSIGCLISLRTLTLESC 208 (2123)
Q Consensus 131 ~~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~-~l-p~~i~~L~~Lr~L~L~~~ 208 (2123)
+.++..++++..+|. -.++|++|++++|.+.+..|.. |.++++|++|++++|.+. .+ |..|..+++|++|++++|
T Consensus 13 ~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 13 YNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETS-FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTT-TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred cccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhH-hccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 457777888888887 3478999999999988544544 589999999999999886 45 567999999999999999
Q ss_pred CCC--CCccccCCCCCcEEEccCCCCcc-cccc--cCCCCCccEEeccCCCCCccc-ChhhhCCCCCCCEEEccCccccc
Q 000128 209 LLG--DVATIGDLKKLEILSLRHSDVEE-LPGE--IGQLTRLKLLDLSNCMKLKVI-RPNVISSLSRLEELYMGNSFTEW 282 (2123)
Q Consensus 209 ~l~--~p~~i~~L~~L~~L~L~~n~l~~-lP~~--i~~L~~L~~L~l~~~~~l~~l-p~~~i~~L~~L~~L~l~~n~~~~ 282 (2123)
.++ .|..++++.+|++|++++|+++. +|.. ++++++|++|++++|. +..+ |...++++++|++|++++|.+.+
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccc
Confidence 998 57889999999999999999985 4554 8999999999999999 6655 54447899999999999998873
Q ss_pred ccccccccChhhhCCC--CCCCEEEEecCCCCCCChhhhccccceeeeccCCccCCCCCcccceeeecccccCccccchh
Q 000128 283 EIEGQSNASLVELKQL--SRLTTLEVHIPDAQVMPQDLLSVELERYRICIGDVWSWSGEHETSRRLKLSALNKCIYLGYG 360 (2123)
Q Consensus 283 ~~~~~~~~~~~~l~~L--~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~p~~ 360 (2123)
.. +..+..+ .+|+.|+++.|.+..++....... .........+|+.|++++..-....|.+
T Consensus 169 ~~-------~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~----------~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 231 (455)
T 3v47_A 169 IC-------EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWE----------KCGNPFKNTSITTLDLSGNGFKESMAKR 231 (455)
T ss_dssp CC-------TTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHH----------HHCCTTTTCEEEEEECTTSCCCHHHHHH
T ss_pred cC-------hhhhhccccccccccccccCcccccchhhcccc----------ccccccccceeeeEecCCCcccccchhh
Confidence 22 3344444 578889998888776654321000 0001123346777777755444444555
Q ss_pred HHHh--ccCCcEEecccccCccccccccCCCCCCCCccEEEeeccCCccEeeccccccCCCcCcccceeeccccccchhh
Q 000128 361 MQML--LKGIEDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLFLHNLMRLEMV 438 (2123)
Q Consensus 361 i~~~--l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~ 438 (2123)
+... .++|+.|+++++......... ..++.+... .......++|+.|++.+..- ...
T Consensus 232 ~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~~~~----------------~~~~~~~~~L~~L~l~~n~l-~~~ 290 (455)
T 3v47_A 232 FFDAIAGTKIQSLILSNSYNMGSSFGH----TNFKDPDNF----------------TFKGLEASGVKTCDLSKSKI-FAL 290 (455)
T ss_dssp HHHHTTTCCEEEEECTTCTTTSCCTTC----CSSCCCCTT----------------TTGGGTTSCCCEEECCSSCC-CEE
T ss_pred hhccccccceeeEeeccccccccccch----hhhccCccc----------------ccccccccCceEEEecCccc-ccc
Confidence 5442 267788888765433211100 000000000 00001123444444444221 111
Q ss_pred hcCCCCcccCCCccEEEEecCCCCCCCCChhhhhhcCCCcEEEecccc
Q 000128 439 YRGQLTEHSFSKLRIIKVCQCDNLKHLFSFPMARNLLQLQKLKVSFCE 486 (2123)
Q Consensus 439 ~~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~~~L~~L~~L~l~~c~ 486 (2123)
. +...+.+++|++|++.+| +++.+++ ..+..+++|++|++++|.
T Consensus 291 ~--~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~ 334 (455)
T 3v47_A 291 L--KSVFSHFTDLEQLTLAQN-EINKIDD-NAFWGLTHLLKLNLSQNF 334 (455)
T ss_dssp C--TTTTTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSC
T ss_pred c--hhhcccCCCCCEEECCCC-cccccCh-hHhcCcccCCEEECCCCc
Confidence 0 112345677777777774 4555544 345677888888888763
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.83 E-value=1.4e-19 Score=236.60 Aligned_cols=314 Identities=18% Similarity=0.142 Sum_probs=186.0
Q ss_pred eEEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCC-CcccCCCCCccEEEcCCCC
Q 000128 131 TAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSL-PSSIGCLISLRTLTLESCL 209 (2123)
Q Consensus 131 ~~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~l-p~~i~~L~~Lr~L~L~~~~ 209 (2123)
+.++.+++.+..+|..+ .+++++|++++|.+.+ ++...|.++++|++|++++|.++.+ |..|+++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKT-LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCCccce-ECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 45666666777777654 3577777777777763 4333457777788888887777755 6677777788888887777
Q ss_pred CC-CC-ccccCCCCCcEEEccCCCCccc-ccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCccccccccc
Q 000128 210 LG-DV-ATIGDLKKLEILSLRHSDVEEL-PGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEG 286 (2123)
Q Consensus 210 l~-~p-~~i~~L~~L~~L~L~~n~l~~l-P~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~ 286 (2123)
++ .+ ..++++.+|++|++++|++..+ |..+.++++|++|++++|. +..+++..++.+++|++|++++|.+..
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~---- 166 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTS---- 166 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCSS----
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCcc----
Confidence 77 33 4567777788888877777755 4567777778888887777 566655557777778888877776652
Q ss_pred ccccChhhhCCCCCCCEEEEecCCCCCCChhhhccccceeeeccCCccCCCCCcccceeeecccccCccccchhHHHhcc
Q 000128 287 QSNASLVELKQLSRLTTLEVHIPDAQVMPQDLLSVELERYRICIGDVWSWSGEHETSRRLKLSALNKCIYLGYGMQMLLK 366 (2123)
Q Consensus 287 ~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~p~~i~~~l~ 366 (2123)
.....+.++++|+.|+++.|.+..++... ...+.+|+.|+++++.....+|..... ..
T Consensus 167 ---~~~~~l~~l~~L~~L~l~~n~i~~~~~~~------------------~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~ 224 (477)
T 2id5_A 167 ---IPTEALSHLHGLIVLRLRHLNINAIRDYS------------------FKRLYRLKVLEISHWPYLDTMTPNCLY-GL 224 (477)
T ss_dssp ---CCHHHHTTCTTCCEEEEESCCCCEECTTC------------------SCSCTTCCEEEEECCTTCCEECTTTTT-TC
T ss_pred ---cChhHhcccCCCcEEeCCCCcCcEeChhh------------------cccCcccceeeCCCCccccccCccccc-Cc
Confidence 22455777777787777777665543321 122334444444433322233333322 23
Q ss_pred CCcEEecccccCccccccccCCCCCCCCccEEEeeccCCccEeeccccccCCCcCcccceeeccccccchhhhcCCCCcc
Q 000128 367 GIEDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLFLHNLMRLEMVYRGQLTEH 446 (2123)
Q Consensus 367 ~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~ 446 (2123)
+|+.|+++++... . ++.. .+..+++|+.|++++|. +..++. .....+++|+.|++.+. .+..+. +....
T Consensus 225 ~L~~L~l~~n~l~-~-~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~----~~~~~l~~L~~L~L~~n-~l~~~~--~~~~~ 293 (477)
T 2id5_A 225 NLTSLSITHCNLT-A-VPYL-AVRHLVYLRFLNLSYNP-ISTIEG----SMLHELLRLQEIQLVGG-QLAVVE--PYAFR 293 (477)
T ss_dssp CCSEEEEESSCCC-S-CCHH-HHTTCTTCCEEECCSSC-CCEECT----TSCTTCTTCCEEECCSS-CCSEEC--TTTBT
T ss_pred cccEEECcCCccc-c-cCHH-HhcCccccCeeECCCCc-CCccCh----hhccccccCCEEECCCC-ccceEC--HHHhc
Confidence 6777777665432 1 2210 13566777777777663 222221 12234555566655543 122221 11223
Q ss_pred cCCCccEEEEecCCCCCCCCChhhhhhcCCCcEEEecccc
Q 000128 447 SFSKLRIIKVCQCDNLKHLFSFPMARNLLQLQKLKVSFCE 486 (2123)
Q Consensus 447 ~~~~L~~L~l~~c~~L~~lp~~~~~~~L~~L~~L~l~~c~ 486 (2123)
.+++|++|+++++ +++.+++ ..+..+++|++|++++++
T Consensus 294 ~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 294 GLNYLRVLNVSGN-QLTTLEE-SVFHSVGNLETLILDSNP 331 (477)
T ss_dssp TCTTCCEEECCSS-CCSCCCG-GGBSCGGGCCEEECCSSC
T ss_pred CcccCCEEECCCC-cCceeCH-hHcCCCcccCEEEccCCC
Confidence 4566666666663 5555554 334556666666666553
No 33
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.83 E-value=4.3e-20 Score=237.15 Aligned_cols=283 Identities=15% Similarity=0.046 Sum_probs=173.7
Q ss_pred CCCceEEEccCCCCccCCCCC-CCCCceEEEeecCcCCCccchhHhhCCCCc-------------cEEEeecCCCCCCCc
Q 000128 127 HKDPTAISIPFRGIYEFPERL-ECPKLKLFVLFSENLSLRIPDLFFEGMTEL-------------RVLSFTGFRFPSLPS 192 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp~~~-~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~L-------------r~L~L~~n~i~~lp~ 192 (2123)
..+++++++++|.+..+|..+ ++++|++|++++|.+.+.+|..+ +.+++| ++|++++|.++.+|.
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~ 88 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhccCCCEEEecCCccccCCC
Confidence 467899999999999999877 89999999999999888888775 666654 999999999998887
Q ss_pred ccCCCCCccEEEcCCCCCC-CCccccCCCCCcEEEccCCCCcccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCC
Q 000128 193 SIGCLISLRTLTLESCLLG-DVATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLE 271 (2123)
Q Consensus 193 ~i~~L~~Lr~L~L~~~~l~-~p~~i~~L~~L~~L~L~~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~ 271 (2123)
. .++|++|++++|.++ .|.. +.+|++|++++|+++.+|... ++|++|++++|. +..+| + ++++++|+
T Consensus 89 ~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~~---~~L~~L~L~~n~-l~~lp-~-~~~l~~L~ 156 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDLP---PLLEYLGVSNNQ-LEKLP-E-LQNSSFLK 156 (454)
T ss_dssp C---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSCC---TTCCEEECCSSC-CSSCC-C-CTTCTTCC
T ss_pred C---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCCC---CCCCEEECcCCC-CCCCc-c-cCCCCCCC
Confidence 3 378999999999988 4433 478999999999988877432 689999999998 77788 4 89999999
Q ss_pred EEEccCcccccccccccccChhhhCCCCCCCEEEEecCCCCCCChhhhccccceeeeccCCccCCCCCcccceeeecccc
Q 000128 272 ELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQVMPQDLLSVELERYRICIGDVWSWSGEHETSRRLKLSAL 351 (2123)
Q Consensus 272 ~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~ 351 (2123)
+|++++|.+.+ + +. ...+|++|+++.|.+..+|.-....+|+. |+++++
T Consensus 157 ~L~l~~N~l~~-l-------p~---~~~~L~~L~L~~n~l~~l~~~~~l~~L~~--------------------L~l~~N 205 (454)
T 1jl5_A 157 IIDVDNNSLKK-L-------PD---LPPSLEFIAAGNNQLEELPELQNLPFLTA--------------------IYADNN 205 (454)
T ss_dssp EEECCSSCCSC-C-------CC---CCTTCCEEECCSSCCSSCCCCTTCTTCCE--------------------EECCSS
T ss_pred EEECCCCcCcc-c-------CC---CcccccEEECcCCcCCcCccccCCCCCCE--------------------EECCCC
Confidence 99999998762 1 11 12489999999998887763223344444 444422
Q ss_pred cCccccchhHHHhccCCcEEecccccCccccccccCCCCCCCCccEEEeeccCCccEeeccccccCCCcCcccceeeccc
Q 000128 352 NKCIYLGYGMQMLLKGIEDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLFLHN 431 (2123)
Q Consensus 352 ~~~~~~p~~i~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~f~~L~~L~l~~ 431 (2123)
. ...+|.. .++|+.|+++++... .+|. ++.+++|++|++++|.. ..++ ..+++|+.|++.+
T Consensus 206 ~-l~~l~~~----~~~L~~L~l~~n~l~--~lp~---~~~l~~L~~L~l~~N~l-~~l~--------~~~~~L~~L~l~~ 266 (454)
T 1jl5_A 206 S-LKKLPDL----PLSLESIVAGNNILE--ELPE---LQNLPFLTTIYADNNLL-KTLP--------DLPPSLEALNVRD 266 (454)
T ss_dssp C-CSSCCCC----CTTCCEEECCSSCCS--SCCC---CTTCTTCCEEECCSSCC-SSCC--------SCCTTCCEEECCS
T ss_pred c-CCcCCCC----cCcccEEECcCCcCC--cccc---cCCCCCCCEEECCCCcC-Cccc--------ccccccCEEECCC
Confidence 1 1112221 246777777665332 2333 36677777777776632 2221 1246677777765
Q ss_pred cccchhhhcCCCCcccCCCccEEEEecCCCCCCCCChhhhhhcCCCcEEEeccc
Q 000128 432 LMRLEMVYRGQLTEHSFSKLRIIKVCQCDNLKHLFSFPMARNLLQLQKLKVSFC 485 (2123)
Q Consensus 432 ~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~~~L~~L~~L~l~~c 485 (2123)
. .+..++ ..+++|++|++++| +++.+|.. .++|+.|+++++
T Consensus 267 N-~l~~l~------~~~~~L~~L~ls~N-~l~~l~~~-----~~~L~~L~l~~N 307 (454)
T 1jl5_A 267 N-YLTDLP------ELPQSLTFLDVSEN-IFSGLSEL-----PPNLYYLNASSN 307 (454)
T ss_dssp S-CCSCCC------CCCTTCCEEECCSS-CCSEESCC-----CTTCCEEECCSS
T ss_pred C-cccccC------cccCcCCEEECcCC-ccCcccCc-----CCcCCEEECcCC
Confidence 3 232221 12467777777764 45555431 156777777765
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.83 E-value=3.7e-19 Score=222.09 Aligned_cols=173 Identities=17% Similarity=0.223 Sum_probs=138.1
Q ss_pred CCCceEEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcC
Q 000128 127 HKDPTAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLE 206 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~ 206 (2123)
++++++|+++++.+..++....+++|++|++++|.+. .++. |..+++|++|++++|.++.+| .+..+++|++|+++
T Consensus 43 l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLN 118 (347)
T ss_dssp HTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECT
T ss_pred cccccEEEEeCCccccchhhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECc
Confidence 5688999999998888876557889999999988876 4554 588899999999999888876 58888999999999
Q ss_pred CCCCCCCccccCCCCCcEEEccCCCCcccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCccccccccc
Q 000128 207 SCLLGDVATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEG 286 (2123)
Q Consensus 207 ~~~l~~p~~i~~L~~L~~L~L~~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~ 286 (2123)
+|.++..+.+..+++|++|++++|.....+..+..+++|++|++++|. +..++. ++.+++|++|++++|.+..
T Consensus 119 ~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~n~l~~---- 191 (347)
T 4fmz_A 119 EDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNYNQIED---- 191 (347)
T ss_dssp TSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECTTSCCCC----
T ss_pred CCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEEccCCcccc----
Confidence 998885545888899999999988544444458888999999998888 666665 7888899999998887761
Q ss_pred ccccChhhhCCCCCCCEEEEecCCCCCCC
Q 000128 287 QSNASLVELKQLSRLTTLEVHIPDAQVMP 315 (2123)
Q Consensus 287 ~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 315 (2123)
...+..+++|+.|+++.|.+..++
T Consensus 192 -----~~~~~~l~~L~~L~l~~n~l~~~~ 215 (347)
T 4fmz_A 192 -----ISPLASLTSLHYFTAYVNQITDIT 215 (347)
T ss_dssp -----CGGGGGCTTCCEEECCSSCCCCCG
T ss_pred -----cccccCCCccceeecccCCCCCCc
Confidence 223778888888888888776554
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=1.6e-19 Score=241.89 Aligned_cols=306 Identities=15% Similarity=0.182 Sum_probs=217.6
Q ss_pred CCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCC-cccCCCCCccEEEcCCCCCC-C-CccccCCCCC
Q 000128 146 RLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLP-SSIGCLISLRTLTLESCLLG-D-VATIGDLKKL 222 (2123)
Q Consensus 146 ~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp-~~i~~L~~Lr~L~L~~~~l~-~-p~~i~~L~~L 222 (2123)
.+.+++++.+++++|.+. .+|..+|..+++|++|++++|.++.+| ..|+.+++|++|+|++|.++ . +..++++++|
T Consensus 47 ~l~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 47 DITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp SGGGCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cccCCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 346778888888888775 678888888999999999999888765 47888999999999999888 3 3567889999
Q ss_pred cEEEccCCCCcccccc-cCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccccccccccccChhhhCCCCCC
Q 000128 223 EILSLRHSDVEELPGE-IGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRL 301 (2123)
Q Consensus 223 ~~L~L~~n~l~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L 301 (2123)
++|++++|.++.+|.. ++++++|++|++++|. +..+++..++++++|++|++++|.+.+ ..++.+++|
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~----------~~~~~l~~L 194 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH----------VDLSLIPSL 194 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSB----------CCGGGCTTC
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCC----------cChhhhhhh
Confidence 9999999988888877 4888999999999888 667776668889999999998888762 125667888
Q ss_pred CEEEEecCCCCCCChhhhccccceeeeccCCccCCCCCcccceeeecccccCccccchhHHHhccCCcEEecccccCccc
Q 000128 302 TTLEVHIPDAQVMPQDLLSVELERYRICIGDVWSWSGEHETSRRLKLSALNKCIYLGYGMQMLLKGIEDLYLDELNGFQN 381 (2123)
Q Consensus 302 ~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~p~~i~~~l~~L~~L~L~~~~~~~~ 381 (2123)
+.|+++.|.+..++. ...++.|++++.. ...+|.. ..++|+.|+++++... +
T Consensus 195 ~~L~l~~n~l~~l~~-----------------------~~~L~~L~ls~n~-l~~~~~~---~~~~L~~L~L~~n~l~-~ 246 (597)
T 3oja_B 195 FHANVSYNLLSTLAI-----------------------PIAVEELDASHNS-INVVRGP---VNVELTILKLQHNNLT-D 246 (597)
T ss_dssp SEEECCSSCCSEEEC-----------------------CTTCSEEECCSSC-CCEEECS---CCSCCCEEECCSSCCC-C
T ss_pred hhhhcccCccccccC-----------------------CchhheeeccCCc-ccccccc---cCCCCCEEECCCCCCC-C
Confidence 888888877654321 1134444444221 1112221 1357888888876543 2
Q ss_pred cccccCCCCCCCCccEEEeeccCCccEeeccccccCCCcCcccceeeccccccchhhhcCCCCcccCCCccEEEEecCCC
Q 000128 382 ALLELEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLFLHNLMRLEMVYRGQLTEHSFSKLRIIKVCQCDN 461 (2123)
Q Consensus 382 ~~~~l~~~~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~ 461 (2123)
.+. ++.+++|+.|++++|......+. ....+++|+.|++++. .+..+ +...+.+++|+.|++++| .
T Consensus 247 -~~~---l~~l~~L~~L~Ls~N~l~~~~~~-----~~~~l~~L~~L~Ls~N-~l~~l---~~~~~~l~~L~~L~Ls~N-~ 312 (597)
T 3oja_B 247 -TAW---LLNYPGLVEVDLSYNELEKIMYH-----PFVKMQRLERLYISNN-RLVAL---NLYGQPIPTLKVLDLSHN-H 312 (597)
T ss_dssp -CGG---GGGCTTCSEEECCSSCCCEEESG-----GGTTCSSCCEEECTTS-CCCEE---ECSSSCCTTCCEEECCSS-C
T ss_pred -Chh---hccCCCCCEEECCCCccCCCCHH-----HhcCccCCCEEECCCC-CCCCC---CcccccCCCCcEEECCCC-C
Confidence 233 47788888888888754333332 2356788888888773 34444 223356889999999985 6
Q ss_pred CCCCCChhhhhhcCCCcEEEecccccchhhhccCCcccccccccccccccceeecccCc
Q 000128 462 LKHLFSFPMARNLLQLQKLKVSFCESLKLIVGKESSETHNVHEIINFTQLHSLTLQCLP 520 (2123)
Q Consensus 462 L~~lp~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~fp~L~~L~l~~~~ 520 (2123)
+..+|+ .+..+++|+.|++++|. +..+. ...+++|+.|++++++
T Consensus 313 l~~i~~--~~~~l~~L~~L~L~~N~-l~~~~------------~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 313 LLHVER--NQPQFDRLENLYLDHNS-IVTLK------------LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCCCGG--GHHHHTTCSEEECCSSC-CCCCC------------CCTTCCCSEEECCSSC
T ss_pred CCccCc--ccccCCCCCEEECCCCC-CCCcC------------hhhcCCCCEEEeeCCC
Confidence 777775 56889999999999875 32222 3457888888888765
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.82 E-value=2.2e-19 Score=227.74 Aligned_cols=301 Identities=17% Similarity=0.132 Sum_probs=234.5
Q ss_pred CCCceEEEccCCCCccCCCCC--CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCC-cccCCCCCccEE
Q 000128 127 HKDPTAISIPFRGIYEFPERL--ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLP-SSIGCLISLRTL 203 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp~~~--~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp-~~i~~L~~Lr~L 203 (2123)
..+++++++.++.+..+|... .+++|++|++++|.+. .++...|..+++|++|++++|.++.+| ..++++++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 678999999999999999865 7999999999999987 455555699999999999999999775 568999999999
Q ss_pred EcCCCCCC-CCcc-ccCCCCCcEEEccCCCCccccc-ccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCccc
Q 000128 204 TLESCLLG-DVAT-IGDLKKLEILSLRHSDVEELPG-EIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFT 280 (2123)
Q Consensus 204 ~L~~~~l~-~p~~-i~~L~~L~~L~L~~n~l~~lP~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~ 280 (2123)
++++|.++ .|.. ++++++|++|++++|++..++. .++++++|++|++++|. +..++ ++.+++|++|++++|.+
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYNLL 198 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC---GGGCTTCSEEECCSSCC
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccc---cccccccceeecccccc
Confidence 99999999 5544 6899999999999999998754 59999999999999998 77775 56789999999999877
Q ss_pred ccccccccccChhhhCCCCCCCEEEEecCCCCCCChhhhccccceeeeccCCccCCCCCcccceeeecccccCccccchh
Q 000128 281 EWEIEGQSNASLVELKQLSRLTTLEVHIPDAQVMPQDLLSVELERYRICIGDVWSWSGEHETSRRLKLSALNKCIYLGYG 360 (2123)
Q Consensus 281 ~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~p~~ 360 (2123)
.. +....+|+.|+++.|.+..++... ..+++.|++++..-. . +.+
T Consensus 199 ~~------------~~~~~~L~~L~l~~n~l~~~~~~~---------------------~~~L~~L~l~~n~l~-~-~~~ 243 (390)
T 3o6n_A 199 ST------------LAIPIAVEELDASHNSINVVRGPV---------------------NVELTILKLQHNNLT-D-TAW 243 (390)
T ss_dssp SE------------EECCSSCSEEECCSSCCCEEECCC---------------------CSSCCEEECCSSCCC-C-CGG
T ss_pred cc------------cCCCCcceEEECCCCeeeeccccc---------------------cccccEEECCCCCCc-c-cHH
Confidence 62 234468999999999887654322 234556666533221 1 234
Q ss_pred HHHhccCCcEEecccccCccccccccCCCCCCCCccEEEeeccCCccEeeccccccCCCcCcccceeeccccccchhhhc
Q 000128 361 MQMLLKGIEDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLFLHNLMRLEMVYR 440 (2123)
Q Consensus 361 i~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~ 440 (2123)
+.. +++|+.|+++++... ...+. .++.+++|++|++.+|. +..++. ....+++|+.|++++. .+..++
T Consensus 244 l~~-l~~L~~L~Ls~n~l~-~~~~~--~~~~l~~L~~L~L~~n~-l~~~~~-----~~~~l~~L~~L~L~~n-~l~~~~- 311 (390)
T 3o6n_A 244 LLN-YPGLVEVDLSYNELE-KIMYH--PFVKMQRLERLYISNNR-LVALNL-----YGQPIPTLKVLDLSHN-HLLHVE- 311 (390)
T ss_dssp GGG-CTTCSEEECCSSCCC-EEESG--GGTTCSSCCEEECCSSC-CCEEEC-----SSSCCTTCCEEECCSS-CCCCCG-
T ss_pred HcC-CCCccEEECCCCcCC-CcChh--HccccccCCEEECCCCc-CcccCc-----ccCCCCCCCEEECCCC-cceecC-
Confidence 433 789999999986543 33232 24889999999999984 444443 2356899999999986 344442
Q ss_pred CCCCcccCCCccEEEEecCCCCCCCCChhhhhhcCCCcEEEecccc
Q 000128 441 GQLTEHSFSKLRIIKVCQCDNLKHLFSFPMARNLLQLQKLKVSFCE 486 (2123)
Q Consensus 441 ~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~~~L~~L~~L~l~~c~ 486 (2123)
...+.+++|++|++.++ .++.++ +..+++|++|++++++
T Consensus 312 --~~~~~l~~L~~L~L~~N-~i~~~~----~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 312 --RNQPQFDRLENLYLDHN-SIVTLK----LSTHHTLKNLTLSHND 350 (390)
T ss_dssp --GGHHHHTTCSEEECCSS-CCCCCC----CCTTCCCSEEECCSSC
T ss_pred --ccccccCcCCEEECCCC-ccceeC----chhhccCCEEEcCCCC
Confidence 23456899999999996 577775 4788999999999875
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.82 E-value=6.1e-19 Score=220.11 Aligned_cols=303 Identities=16% Similarity=0.194 Sum_probs=225.6
Q ss_pred CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcCCCCCCCCccccCCCCCcEEEc
Q 000128 148 ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLGDVATIGDLKKLEILSL 227 (2123)
Q Consensus 148 ~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~~l~~p~~i~~L~~L~~L~L 227 (2123)
.+++|++|+++++.+. .++. +..+++|++|++++|.++.+|. +..+++|++|++++|.++.++.+.++++|++|++
T Consensus 42 ~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l 117 (347)
T 4fmz_A 42 ELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYL 117 (347)
T ss_dssp HHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred hcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEEC
Confidence 6789999999999886 4554 5789999999999999999987 9999999999999999997778999999999999
Q ss_pred cCCCCcccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccccccccccccChhhhCCCCCCCEEEEe
Q 000128 228 RHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEVH 307 (2123)
Q Consensus 228 ~~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 307 (2123)
++|.+..+|. +..+++|++|++++|.....++. ++.+++|++|++++|.+.. ...++.+++|+.|+++
T Consensus 118 ~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~---------~~~~~~l~~L~~L~l~ 185 (347)
T 4fmz_A 118 NEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKD---------VTPIANLTDLYSLSLN 185 (347)
T ss_dssp TTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCC---------CGGGGGCTTCSEEECT
T ss_pred cCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCC---------chhhccCCCCCEEEcc
Confidence 9999999987 99999999999999975666654 8999999999999998762 2238899999999999
Q ss_pred cCCCCCCChhhhccccceeeeccCCccCCCCCcccceeeecccccCccccchhHHHhccCCcEEecccccCccccccccC
Q 000128 308 IPDAQVMPQDLLSVELERYRICIGDVWSWSGEHETSRRLKLSALNKCIYLGYGMQMLLKGIEDLYLDELNGFQNALLELE 387 (2123)
Q Consensus 308 ~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~p~~i~~~l~~L~~L~L~~~~~~~~~~~~l~ 387 (2123)
.|.+..++......+|+. +.+.+.. ....+. ...+++|+.|+++++... . .+.
T Consensus 186 ~n~l~~~~~~~~l~~L~~--------------------L~l~~n~-l~~~~~--~~~~~~L~~L~l~~n~l~-~-~~~-- 238 (347)
T 4fmz_A 186 YNQIEDISPLASLTSLHY--------------------FTAYVNQ-ITDITP--VANMTRLNSLKIGNNKIT-D-LSP-- 238 (347)
T ss_dssp TSCCCCCGGGGGCTTCCE--------------------EECCSSC-CCCCGG--GGGCTTCCEEECCSSCCC-C-CGG--
T ss_pred CCcccccccccCCCccce--------------------eecccCC-CCCCch--hhcCCcCCEEEccCCccC-C-Ccc--
Confidence 999887765333344444 4444221 111111 223678888888886542 2 222
Q ss_pred CCCCCCCccEEEeeccCCccEeeccccccCCCcCcccceeeccccccchhhhcCCCCcccCCCccEEEEecCCCCCCCCC
Q 000128 388 DGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLFLHNLMRLEMVYRGQLTEHSFSKLRIIKVCQCDNLKHLFS 467 (2123)
Q Consensus 388 ~~~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~lp~ 467 (2123)
+..+++|++|++.+|. +..+ .....+++|+.|++.++ .+..++ ....+++|++|++.+| .++..++
T Consensus 239 -~~~l~~L~~L~l~~n~-l~~~------~~~~~l~~L~~L~l~~n-~l~~~~----~~~~l~~L~~L~L~~n-~l~~~~~ 304 (347)
T 4fmz_A 239 -LANLSQLTWLEIGTNQ-ISDI------NAVKDLTKLKMLNVGSN-QISDIS----VLNNLSQLNSLFLNNN-QLGNEDM 304 (347)
T ss_dssp -GTTCTTCCEEECCSSC-CCCC------GGGTTCTTCCEEECCSS-CCCCCG----GGGGCTTCSEEECCSS-CCCGGGH
T ss_pred -hhcCCCCCEEECCCCc-cCCC------hhHhcCCCcCEEEccCC-ccCCCh----hhcCCCCCCEEECcCC-cCCCcCh
Confidence 3788888888888873 2222 12456788888888775 333331 2356789999999986 4555543
Q ss_pred hhhhhhcCCCcEEEecccccchhhhccCCcccccccccccccccceeecccCc
Q 000128 468 FPMARNLLQLQKLKVSFCESLKLIVGKESSETHNVHEIINFTQLHSLTLQCLP 520 (2123)
Q Consensus 468 ~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~fp~L~~L~l~~~~ 520 (2123)
..+..+++|++|++++|+ +..++. ...+++|+.|++++++
T Consensus 305 -~~l~~l~~L~~L~L~~n~-l~~~~~-----------~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 305 -EVIGGLTNLTTLFLSQNH-ITDIRP-----------LASLSKMDSADFANQV 344 (347)
T ss_dssp -HHHHTCTTCSEEECCSSS-CCCCGG-----------GGGCTTCSEESSSCC-
T ss_pred -hHhhccccCCEEEccCCc-cccccC-----------hhhhhccceeehhhhc
Confidence 456788999999999886 333321 2356778888877764
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.82 E-value=1.2e-18 Score=227.45 Aligned_cols=242 Identities=20% Similarity=0.251 Sum_probs=177.9
Q ss_pred eEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCC-CcccCCCCCccEEEcCCCCCC--CCccccCCCCCcEEEccC
Q 000128 153 KLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSL-PSSIGCLISLRTLTLESCLLG--DVATIGDLKKLEILSLRH 229 (2123)
Q Consensus 153 r~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~l-p~~i~~L~~Lr~L~L~~~~l~--~p~~i~~L~~L~~L~L~~ 229 (2123)
+.++.+++.+. .+|..+ .+.+++|++++|.++.+ |..|.++++|++|+|++|.++ .|..|+++.+|++|++++
T Consensus 14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 56777776665 677654 46889999999999977 468899999999999999988 468899999999999999
Q ss_pred CCCcccccc-cCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccccccccccccChhhhCCCCCCCEEEEec
Q 000128 230 SDVEELPGE-IGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEVHI 308 (2123)
Q Consensus 230 n~l~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 308 (2123)
|+++.+|.. ++++++|++|++++|. +..+++..+.++++|++|++++|.+.+ ..+..++++++|+.|+++.
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~~~~~~l~~L~~L~l~~ 161 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDLVY-------ISHRAFSGLNSLEQLTLEK 161 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEECCTTCCE-------ECTTSSTTCTTCCEEEEES
T ss_pred CcCCccCcccccCCCCCCEEECCCCc-cccCChhHccccccCCEEECCCCccce-------eChhhccCCCCCCEEECCC
Confidence 999988875 6889999999999998 666766668999999999999988763 2355678889999999998
Q ss_pred CCCCCCChhhhccccceeeeccCCccCCCCCcccceeeecccccCccccchhHHHhccCCcEEecccccCccccccccCC
Q 000128 309 PDAQVMPQDLLSVELERYRICIGDVWSWSGEHETSRRLKLSALNKCIYLGYGMQMLLKGIEDLYLDELNGFQNALLELED 388 (2123)
Q Consensus 309 ~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~p~~i~~~l~~L~~L~L~~~~~~~~~~~~l~~ 388 (2123)
|.+..++.... ..+++|+.|+++++... .. +.. .
T Consensus 162 n~l~~~~~~~l-------------------------------------------~~l~~L~~L~l~~n~i~-~~-~~~-~ 195 (477)
T 2id5_A 162 CNLTSIPTEAL-------------------------------------------SHLHGLIVLRLRHLNIN-AI-RDY-S 195 (477)
T ss_dssp CCCSSCCHHHH-------------------------------------------TTCTTCCEEEEESCCCC-EE-CTT-C
T ss_pred CcCcccChhHh-------------------------------------------cccCCCcEEeCCCCcCc-Ee-Chh-h
Confidence 88776654321 11456666666664432 11 111 3
Q ss_pred CCCCCCccEEEeeccCCccEeeccccccCCCcCcccceeeccccccchhhhcCCCCcccCCCccEEEEecCCCCCCCCCh
Q 000128 389 GEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLFLHNLMRLEMVYRGQLTEHSFSKLRIIKVCQCDNLKHLFSF 468 (2123)
Q Consensus 389 ~~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~lp~~ 468 (2123)
+..+++|++|++.+|.....++.. .....+|++|++.+| +++.+|.
T Consensus 196 ~~~l~~L~~L~l~~~~~~~~~~~~--------------------------------~~~~~~L~~L~l~~n-~l~~~~~- 241 (477)
T 2id5_A 196 FKRLYRLKVLEISHWPYLDTMTPN--------------------------------CLYGLNLTSLSITHC-NLTAVPY- 241 (477)
T ss_dssp SCSCTTCCEEEEECCTTCCEECTT--------------------------------TTTTCCCSEEEEESS-CCCSCCH-
T ss_pred cccCcccceeeCCCCccccccCcc--------------------------------cccCccccEEECcCC-cccccCH-
Confidence 467788888888877544433220 111347788888875 5777764
Q ss_pred hhhhhcCCCcEEEecccc
Q 000128 469 PMARNLLQLQKLKVSFCE 486 (2123)
Q Consensus 469 ~~~~~L~~L~~L~l~~c~ 486 (2123)
..+.++++|++|+++++.
T Consensus 242 ~~~~~l~~L~~L~Ls~n~ 259 (477)
T 2id5_A 242 LAVRHLVYLRFLNLSYNP 259 (477)
T ss_dssp HHHTTCTTCCEEECCSSC
T ss_pred HHhcCccccCeeECCCCc
Confidence 356778888888888764
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.80 E-value=1.3e-18 Score=223.44 Aligned_cols=165 Identities=18% Similarity=0.154 Sum_probs=145.7
Q ss_pred CCCceEEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcC
Q 000128 127 HKDPTAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLE 206 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~ 206 (2123)
++++++|++++|.+..+| ...+++|++|++++|.+.+ ++ +..+++|++|++++|.++.+| ++.+++|++|+++
T Consensus 63 l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~-~~---~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~ 135 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTN-LD---VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCA 135 (457)
T ss_dssp CTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSC-CC---CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECT
T ss_pred cCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCce-ee---cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECC
Confidence 679999999999999886 4489999999999999875 44 589999999999999999986 8999999999999
Q ss_pred CCCCCCCccccCCCCCcEEEccCC-CCcccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccccccc
Q 000128 207 SCLLGDVATIGDLKKLEILSLRHS-DVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIE 285 (2123)
Q Consensus 207 ~~~l~~p~~i~~L~~L~~L~L~~n-~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~ 285 (2123)
+|.++.. .++.+++|++|++++| .+..+ .++.+++|++|++++|. +..+| ++.+++|++|++++|.+.+
T Consensus 136 ~N~l~~l-~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~-l~~l~---l~~l~~L~~L~l~~N~l~~--- 205 (457)
T 3bz5_A 136 RNTLTEI-DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK-ITELD---VSQNKLLNRLNCDTNNITK--- 205 (457)
T ss_dssp TSCCSCC-CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC-CCCCC---CTTCTTCCEEECCSSCCSC---
T ss_pred CCcccee-ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc-cceec---cccCCCCCEEECcCCcCCe---
Confidence 9999854 3889999999999999 56666 58899999999999998 78887 7899999999999998872
Q ss_pred cccccChhhhCCCCCCCEEEEecCCCCCCC
Q 000128 286 GQSNASLVELKQLSRLTTLEVHIPDAQVMP 315 (2123)
Q Consensus 286 ~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 315 (2123)
. .++.+++|+.|+++.|.+..+|
T Consensus 206 ------~-~l~~l~~L~~L~Ls~N~l~~ip 228 (457)
T 3bz5_A 206 ------L-DLNQNIQLTFLDCSSNKLTEID 228 (457)
T ss_dssp ------C-CCTTCTTCSEEECCSSCCSCCC
T ss_pred ------e-ccccCCCCCEEECcCCcccccC
Confidence 1 4788999999999999887765
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=9.4e-19 Score=234.39 Aligned_cols=301 Identities=17% Similarity=0.126 Sum_probs=235.1
Q ss_pred CCCceEEEccCCCCccCCCCC--CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCc-ccCCCCCccEE
Q 000128 127 HKDPTAISIPFRGIYEFPERL--ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPS-SIGCLISLRTL 203 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp~~~--~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~-~i~~L~~Lr~L 203 (2123)
..+++.+++.++.+..+|..+ .+++|++|++++|.+.+ ++...|..+++|++|++++|.++.+|. .|+++++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCC-CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 678999999999999998865 79999999999999884 554456899999999999999998765 57999999999
Q ss_pred EcCCCCCC-CCc-cccCCCCCcEEEccCCCCccccc-ccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCccc
Q 000128 204 TLESCLLG-DVA-TIGDLKKLEILSLRHSDVEELPG-EIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFT 280 (2123)
Q Consensus 204 ~L~~~~l~-~p~-~i~~L~~L~~L~L~~n~l~~lP~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~ 280 (2123)
++++|.++ .|+ .++++.+|++|++++|.+..+|. .++++++|++|++++|. +..++ ++.+++|++|++++|.+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~---~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC---GGGCTTCSEEECCSSCC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC---hhhhhhhhhhhcccCcc
Confidence 99999999 554 46999999999999999997755 69999999999999998 77776 56789999999999877
Q ss_pred ccccccccccChhhhCCCCCCCEEEEecCCCCCCChhhhccccceeeeccCCccCCCCCcccceeeecccccCccccchh
Q 000128 281 EWEIEGQSNASLVELKQLSRLTTLEVHIPDAQVMPQDLLSVELERYRICIGDVWSWSGEHETSRRLKLSALNKCIYLGYG 360 (2123)
Q Consensus 281 ~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~p~~ 360 (2123)
.+ +....+|+.|+++.|.+..++... ..+|+.|+++++.-. -+.+
T Consensus 205 ~~------------l~~~~~L~~L~ls~n~l~~~~~~~---------------------~~~L~~L~L~~n~l~--~~~~ 249 (597)
T 3oja_B 205 ST------------LAIPIAVEELDASHNSINVVRGPV---------------------NVELTILKLQHNNLT--DTAW 249 (597)
T ss_dssp SE------------EECCTTCSEEECCSSCCCEEECSC---------------------CSCCCEEECCSSCCC--CCGG
T ss_pred cc------------ccCCchhheeeccCCccccccccc---------------------CCCCCEEECCCCCCC--CChh
Confidence 62 344568999999999887654322 134566666643321 1344
Q ss_pred HHHhccCCcEEecccccCccccccccCCCCCCCCccEEEeeccCCccEeeccccccCCCcCcccceeeccccccchhhhc
Q 000128 361 MQMLLKGIEDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLFLHNLMRLEMVYR 440 (2123)
Q Consensus 361 i~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~ 440 (2123)
+.. +++|+.|+++++... ...|. .++.+++|+.|++++|. +..++. ....+|+|+.|+++++. +..++
T Consensus 250 l~~-l~~L~~L~Ls~N~l~-~~~~~--~~~~l~~L~~L~Ls~N~-l~~l~~-----~~~~l~~L~~L~Ls~N~-l~~i~- 317 (597)
T 3oja_B 250 LLN-YPGLVEVDLSYNELE-KIMYH--PFVKMQRLERLYISNNR-LVALNL-----YGQPIPTLKVLDLSHNH-LLHVE- 317 (597)
T ss_dssp GGG-CTTCSEEECCSSCCC-EEESG--GGTTCSSCCEEECTTSC-CCEEEC-----SSSCCTTCCEEECCSSC-CCCCG-
T ss_pred hcc-CCCCCEEECCCCccC-CCCHH--HhcCccCCCEEECCCCC-CCCCCc-----ccccCCCCcEEECCCCC-CCccC-
Confidence 443 789999999986554 33332 24889999999999984 444443 23568999999998853 33442
Q ss_pred CCCCcccCCCccEEEEecCCCCCCCCChhhhhhcCCCcEEEecccc
Q 000128 441 GQLTEHSFSKLRIIKVCQCDNLKHLFSFPMARNLLQLQKLKVSFCE 486 (2123)
Q Consensus 441 ~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~~~L~~L~~L~l~~c~ 486 (2123)
...+.+++|+.|++.+| .+..++ +..+++|+.|++++++
T Consensus 318 --~~~~~l~~L~~L~L~~N-~l~~~~----~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 318 --RNQPQFDRLENLYLDHN-SIVTLK----LSTHHTLKNLTLSHND 356 (597)
T ss_dssp --GGHHHHTTCSEEECCSS-CCCCCC----CCTTCCCSEEECCSSC
T ss_pred --cccccCCCCCEEECCCC-CCCCcC----hhhcCCCCEEEeeCCC
Confidence 23467899999999996 577775 3778999999999976
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.77 E-value=5.9e-18 Score=209.38 Aligned_cols=153 Identities=18% Similarity=0.252 Sum_probs=97.6
Q ss_pred CceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCC-cccCCCCCccEEEcCCCCCC--CCccccCCCCCcEEEc
Q 000128 151 KLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLP-SSIGCLISLRTLTLESCLLG--DVATIGDLKKLEILSL 227 (2123)
Q Consensus 151 ~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp-~~i~~L~~Lr~L~L~~~~l~--~p~~i~~L~~L~~L~L 227 (2123)
+++.++++++.+. .+|..+ .++|++|++++|.++.++ ..++++++|++|++++|.++ .|..++++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4666666666654 455543 356677777777776553 45677777777777777766 3466777777777777
Q ss_pred cCCCCcccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccccccccccccChhhhCCCCCCCEEEEe
Q 000128 228 RHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEVH 307 (2123)
Q Consensus 228 ~~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 307 (2123)
++|+++.+|..+. ++|++|++++|. +..+|+..++++++|++|++++|.+... ...+..++.+ +|+.|+++
T Consensus 110 ~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 110 SKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENS-----GFEPGAFDGL-KLNYLRIS 180 (332)
T ss_dssp CSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGG-----GSCTTSSCSC-CCSCCBCC
T ss_pred CCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccC-----CCCcccccCC-ccCEEECc
Confidence 7777777766655 677777777776 6666665567777777777777666410 1223445555 67777777
Q ss_pred cCCCCCCCh
Q 000128 308 IPDAQVMPQ 316 (2123)
Q Consensus 308 ~~~~~~~~~ 316 (2123)
.|.+..+|.
T Consensus 181 ~n~l~~l~~ 189 (332)
T 2ft3_A 181 EAKLTGIPK 189 (332)
T ss_dssp SSBCSSCCS
T ss_pred CCCCCccCc
Confidence 666665554
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.76 E-value=1.5e-18 Score=212.19 Aligned_cols=244 Identities=16% Similarity=0.147 Sum_probs=182.5
Q ss_pred CCceEEEccCCCCc---cCCCCC-CCCCceEEEeec-CcCCCccchhHhhCCCCccEEEeecCCCC-CCCcccCCCCCcc
Q 000128 128 KDPTAISIPFRGIY---EFPERL-ECPKLKLFVLFS-ENLSLRIPDLFFEGMTELRVLSFTGFRFP-SLPSSIGCLISLR 201 (2123)
Q Consensus 128 ~~l~~L~l~~n~~~---~lp~~~-~~~~Lr~L~l~~-n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~-~lp~~i~~L~~Lr 201 (2123)
.++++|++++|.+. .+|..+ ++++|++|++++ |.+.+.+|..+ .++++|++|++++|.++ .+|..++++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 57889999998887 467666 788999999985 88877788775 78999999999999988 7888899999999
Q ss_pred EEEcCCCCCC--CCccccCCCCCcEEEccCCCCc-ccccccCCCC-CccEEeccCCCCCcccChhhhCCCCCCCEEEccC
Q 000128 202 TLTLESCLLG--DVATIGDLKKLEILSLRHSDVE-ELPGEIGQLT-RLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGN 277 (2123)
Q Consensus 202 ~L~L~~~~l~--~p~~i~~L~~L~~L~L~~n~l~-~lP~~i~~L~-~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~ 277 (2123)
+|++++|.++ .|..++.+++|++|++++|+++ .+|..++++. +|++|++++|...+.+|.. ++.++ |++|++++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLSR 206 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECCS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECcC
Confidence 9999999877 5678889999999999999888 7888898888 8999999998833356665 78887 99999998
Q ss_pred cccccccccccccChhhhCCCCCCCEEEEecCCCCCCChhhhccccceeeeccCCccCCCCCcccceeeecccccCcccc
Q 000128 278 SFTEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQVMPQDLLSVELERYRICIGDVWSWSGEHETSRRLKLSALNKCIYL 357 (2123)
Q Consensus 278 n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 357 (2123)
|.+.+ ..+..++++++|+.|+++.|.+...+..+
T Consensus 207 N~l~~-------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--------------------------------------- 240 (313)
T 1ogq_A 207 NMLEG-------DASVLFGSDKNTQKIHLAKNSLAFDLGKV--------------------------------------- 240 (313)
T ss_dssp SEEEE-------CCGGGCCTTSCCSEEECCSSEECCBGGGC---------------------------------------
T ss_pred CcccC-------cCCHHHhcCCCCCEEECCCCceeeecCcc---------------------------------------
Confidence 88763 23667888889999998887664322110
Q ss_pred chhHHHhccCCcEEecccccCccccccccCCCCCCCCccEEEeeccCCccEeeccccccCCCcCcccceeecccccc
Q 000128 358 GYGMQMLLKGIEDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLFLHNLMR 434 (2123)
Q Consensus 358 p~~i~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~f~~L~~L~l~~~~~ 434 (2123)
..+++|++|+++++... ..+|.. ++.+++|++|++++|...+.++. ...+++|+.+++.+.+.
T Consensus 241 -----~~l~~L~~L~Ls~N~l~-~~~p~~--l~~l~~L~~L~Ls~N~l~~~ip~------~~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 241 -----GLSKNLNGLDLRNNRIY-GTLPQG--LTQLKFLHSLNVSFNNLCGEIPQ------GGNLQRFDVSAYANNKC 303 (313)
T ss_dssp -----CCCTTCCEEECCSSCCE-ECCCGG--GGGCTTCCEEECCSSEEEEECCC------STTGGGSCGGGTCSSSE
T ss_pred -----cccCCCCEEECcCCccc-CcCChH--HhcCcCCCEEECcCCcccccCCC------CccccccChHHhcCCCC
Confidence 01456777777765443 223321 36778888888887743333332 25677777777776543
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.76 E-value=2.3e-17 Score=203.89 Aligned_cols=154 Identities=18% Similarity=0.282 Sum_probs=100.8
Q ss_pred CceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCc-ccCCCCCccEEEcCCCCCC--CCccccCCCCCcEEEc
Q 000128 151 KLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPS-SIGCLISLRTLTLESCLLG--DVATIGDLKKLEILSL 227 (2123)
Q Consensus 151 ~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~-~i~~L~~Lr~L~L~~~~l~--~p~~i~~L~~L~~L~L 227 (2123)
++++++++++.+. .+|..+ .+.+++|++++|.++.+|. .++++++|++|++++|.++ .|..++++++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 4556666655544 455433 3566777777777776654 5677777777777777766 3566777777777777
Q ss_pred cCCCCcccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccccccccccccChhhhCCCCCCCEEEEe
Q 000128 228 RHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEVH 307 (2123)
Q Consensus 228 ~~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 307 (2123)
++|+++.+|..+. ++|++|++++|. +..+++..++++++|++|++++|.+... ...+..++++++|+.|+++
T Consensus 108 s~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~~~l~~L~~L~l~ 179 (330)
T 1xku_A 108 SKNQLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSS-----GIENGAFQGMKKLSYIRIA 179 (330)
T ss_dssp CSSCCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGG-----GBCTTGGGGCTTCCEEECC
T ss_pred CCCcCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCcc-----CcChhhccCCCCcCEEECC
Confidence 7777777776655 577777777776 6666666677777777777777766410 1234556677777777777
Q ss_pred cCCCCCCCh
Q 000128 308 IPDAQVMPQ 316 (2123)
Q Consensus 308 ~~~~~~~~~ 316 (2123)
.|.+..+|.
T Consensus 180 ~n~l~~l~~ 188 (330)
T 1xku_A 180 DTNITTIPQ 188 (330)
T ss_dssp SSCCCSCCS
T ss_pred CCccccCCc
Confidence 776665543
No 44
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.76 E-value=5e-18 Score=208.65 Aligned_cols=220 Identities=21% Similarity=0.269 Sum_probs=177.4
Q ss_pred CCCceEEEccCCCCccCCCCC-CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEc
Q 000128 127 HKDPTAISIPFRGIYEFPERL-ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTL 205 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp~~~-~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L 205 (2123)
..+++.|++++|.+..+|..+ .+++|++|++++|.+. .+|..+ ..+++|++|++++|.++.+|..++++++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 468999999999999998876 7999999999999988 788765 8899999999999999999999999999999999
Q ss_pred CCCCCC--CCcccc---------CCCCCcEEEccCCCCcccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEE
Q 000128 206 ESCLLG--DVATIG---------DLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELY 274 (2123)
Q Consensus 206 ~~~~l~--~p~~i~---------~L~~L~~L~L~~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~ 274 (2123)
++|.+. .|..++ ++.+|++|++++|+++.+|..++++++|++|++++|. +..+|+. ++++++|++|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~-l~~l~~L~~L~ 235 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPA-IHHLPKLEELD 235 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGG-GGGCTTCCEEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchh-hccCCCCCEEE
Confidence 997754 566655 4999999999999999999999999999999999998 7788887 89999999999
Q ss_pred ccCcccccccccccccChhhhCCCCCCCEEEEecCCCCCCChhhhccccceeeeccCCccCCCCCcccceeeecccccCc
Q 000128 275 MGNSFTEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQVMPQDLLSVELERYRICIGDVWSWSGEHETSRRLKLSALNKC 354 (2123)
Q Consensus 275 l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~ 354 (2123)
+++|.+.+. .+..++++++|+.|+++.|.+...
T Consensus 236 Ls~n~~~~~-------~p~~~~~l~~L~~L~L~~n~~~~~---------------------------------------- 268 (328)
T 4fcg_A 236 LRGCTALRN-------YPPIFGGRAPLKRLILKDCSNLLT---------------------------------------- 268 (328)
T ss_dssp CTTCTTCCB-------CCCCTTCCCCCCEEECTTCTTCCB----------------------------------------
T ss_pred CcCCcchhh-------hHHHhcCCCCCCEEECCCCCchhh----------------------------------------
Confidence 999887743 356788889999999887654321
Q ss_pred cccchhHHHhccCCcEEecccccCccccccccCCCCCCCCccEEEeecc
Q 000128 355 IYLGYGMQMLLKGIEDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNV 403 (2123)
Q Consensus 355 ~~~p~~i~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~ 403 (2123)
+|.++. .+++|+.|++++|+........ ++.+++|+.+.+..+
T Consensus 269 --~p~~~~-~l~~L~~L~L~~n~~~~~iP~~---l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 269 --LPLDIH-RLTQLEKLDLRGCVNLSRLPSL---IAQLPANCIILVPPH 311 (328)
T ss_dssp --CCTTGG-GCTTCCEEECTTCTTCCCCCGG---GGGSCTTCEEECCGG
T ss_pred --cchhhh-cCCCCCEEeCCCCCchhhccHH---HhhccCceEEeCCHH
Confidence 122222 1567777777776655433333 367777777777654
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.75 E-value=1.1e-17 Score=205.63 Aligned_cols=222 Identities=20% Similarity=0.256 Sum_probs=155.3
Q ss_pred CCCCccEEEeecCCCCCCCcccCCCCCccEEEcCCCCCC-CCccccCCCCCcEEEccCCCCcccccccCCCCCccEEecc
Q 000128 173 GMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLG-DVATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLS 251 (2123)
Q Consensus 173 ~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~~l~-~p~~i~~L~~L~~L~L~~n~l~~lP~~i~~L~~L~~L~l~ 251 (2123)
....+++|++++|.++.+|..++++++|++|++++|.++ .|..++++.+|++|++++|.++.+|..++++++|++|+++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 456778888888888888877888888888888888877 5677788888888888888888888888888888888888
Q ss_pred CCCCCcccChhhhC---------CCCCCCEEEccCcccccccccccccChhhhCCCCCCCEEEEecCCCCCCChhhhccc
Q 000128 252 NCMKLKVIRPNVIS---------SLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQVMPQDLLSVE 322 (2123)
Q Consensus 252 ~~~~l~~lp~~~i~---------~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~ 322 (2123)
+|...+.+|.. ++ ++++|++|++++|.+. ..+..++++++|+.|+++.|.+..+|..+
T Consensus 159 ~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~--------~lp~~l~~l~~L~~L~L~~N~l~~l~~~l---- 225 (328)
T 4fcg_A 159 ACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIR--------SLPASIANLQNLKSLKIRNSPLSALGPAI---- 225 (328)
T ss_dssp EETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCC--------CCCGGGGGCTTCCEEEEESSCCCCCCGGG----
T ss_pred CCCCccccChh-HhhccchhhhccCCCCCEEECcCCCcC--------cchHhhcCCCCCCEEEccCCCCCcCchhh----
Confidence 87667777765 43 3777777777777665 23455777777777777777665544321
Q ss_pred cceeeeccCCccCCCCCcccceeeecccccCccccchhHHHhccCCcEEecccccCccccccccCCCCCCCCccEEEeec
Q 000128 323 LERYRICIGDVWSWSGEHETSRRLKLSALNKCIYLGYGMQMLLKGIEDLYLDELNGFQNALLELEDGEVFPLLKHLHVQN 402 (2123)
Q Consensus 323 L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~p~~i~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~L~~ 402 (2123)
. .+++|+.|++++|+..... |. .++.+++|++|++.+
T Consensus 226 ---------------------------------------~-~l~~L~~L~Ls~n~~~~~~-p~--~~~~l~~L~~L~L~~ 262 (328)
T 4fcg_A 226 ---------------------------------------H-HLPKLEELDLRGCTALRNY-PP--IFGGRAPLKRLILKD 262 (328)
T ss_dssp ---------------------------------------G-GCTTCCEEECTTCTTCCBC-CC--CTTCCCCCCEEECTT
T ss_pred ---------------------------------------c-cCCCCCEEECcCCcchhhh-HH--HhcCCCCCCEEECCC
Confidence 1 1456666666665544322 22 136777777777777
Q ss_pred cCCccEeeccccccCCCcCcccceeeccccccchhhhcCCCCcccCCCccEEEEecCCCCCCCCChhhhhhcCCCcEEEe
Q 000128 403 VCEILYIVNLVGWEHCNAFPLLESLFLHNLMRLEMVYRGQLTEHSFSKLRIIKVCQCDNLKHLFSFPMARNLLQLQKLKV 482 (2123)
Q Consensus 403 ~~~~~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~~~L~~L~~L~l 482 (2123)
|...+.++. ..+.+++|++|++++|+.+..+|. .+.++++|+.+.+
T Consensus 263 n~~~~~~p~--------------------------------~~~~l~~L~~L~L~~n~~~~~iP~--~l~~L~~L~~l~l 308 (328)
T 4fcg_A 263 CSNLLTLPL--------------------------------DIHRLTQLEKLDLRGCVNLSRLPS--LIAQLPANCIILV 308 (328)
T ss_dssp CTTCCBCCT--------------------------------TGGGCTTCCEEECTTCTTCCCCCG--GGGGSCTTCEEEC
T ss_pred CCchhhcch--------------------------------hhhcCCCCCEEeCCCCCchhhccH--HHhhccCceEEeC
Confidence 643332221 124567888888888888888876 6788888888888
Q ss_pred cc
Q 000128 483 SF 484 (2123)
Q Consensus 483 ~~ 484 (2123)
..
T Consensus 309 ~~ 310 (328)
T 4fcg_A 309 PP 310 (328)
T ss_dssp CG
T ss_pred CH
Confidence 74
No 46
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.74 E-value=1.6e-17 Score=207.50 Aligned_cols=274 Identities=21% Similarity=0.197 Sum_probs=193.7
Q ss_pred eEEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCC-CcccCCCCCccEEEcCCCC
Q 000128 131 TAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSL-PSSIGCLISLRTLTLESCL 209 (2123)
Q Consensus 131 ~~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~l-p~~i~~L~~Lr~L~L~~~~ 209 (2123)
...+.+++.+..+|..+ .++|++|++++|.+. .++...|.++++|++|++++|.++.+ |..++++++|++|++++|.
T Consensus 34 ~~c~~~~~~l~~iP~~~-~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 34 GICKGSSGSLNSIPSGL-TEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp SEEECCSTTCSSCCTTC-CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred eEeeCCCCCcccccccc-cccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 34788888888888765 358999999999887 46665568899999999999999876 4568899999999999999
Q ss_pred CC-CCc-cccCCCCCcEEEccCCCCccccc--ccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccccccc
Q 000128 210 LG-DVA-TIGDLKKLEILSLRHSDVEELPG--EIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIE 285 (2123)
Q Consensus 210 l~-~p~-~i~~L~~L~~L~L~~n~l~~lP~--~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~ 285 (2123)
++ .+. .++++++|++|++++|+++.+|. .++++++|++|++++|..+..+++..++++++|++|++++|.+.+
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--- 188 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS--- 188 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE---
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc---
Confidence 88 444 48889999999999999998887 688899999999998855777876668899999999999888763
Q ss_pred cccccChhhhCCCCCCCEEEEecCCCCCCChhhhccccceeeeccCCccCCCCCcccceeeecccccCccccchhHHHhc
Q 000128 286 GQSNASLVELKQLSRLTTLEVHIPDAQVMPQDLLSVELERYRICIGDVWSWSGEHETSRRLKLSALNKCIYLGYGMQMLL 365 (2123)
Q Consensus 286 ~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~p~~i~~~l 365 (2123)
..+..++++++|++|+++.|.+..++.. ....+
T Consensus 189 ----~~~~~l~~l~~L~~L~l~~n~l~~~~~~-------------------------------------------~~~~~ 221 (353)
T 2z80_A 189 ----YEPKSLKSIQNVSHLILHMKQHILLLEI-------------------------------------------FVDVT 221 (353)
T ss_dssp ----ECTTTTTTCSEEEEEEEECSCSTTHHHH-------------------------------------------HHHHT
T ss_pred ----cCHHHHhccccCCeecCCCCccccchhh-------------------------------------------hhhhc
Confidence 2356778888888888888776544332 22224
Q ss_pred cCCcEEecccccCccccccccCCCCCCCCccEEEeeccCCccEeeccccccCCCcCcccceeeccccccchhhhcCCCCc
Q 000128 366 KGIEDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLFLHNLMRLEMVYRGQLTE 445 (2123)
Q Consensus 366 ~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~ 445 (2123)
++|+.|+++++.........++.....+.++.+++.++. +.+ ..+..++ ...
T Consensus 222 ~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~------------------------l~~-~~l~~l~---~~l 273 (353)
T 2z80_A 222 SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK------------------------ITD-ESLFQVM---KLL 273 (353)
T ss_dssp TTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCB------------------------CCH-HHHHHHH---HHH
T ss_pred ccccEEECCCCccccccccccccccccchhhcccccccc------------------------ccC-cchhhhH---HHH
Confidence 566666666644322111112112334555666655541 111 0111111 112
Q ss_pred ccCCCccEEEEecCCCCCCCCChhhhhhcCCCcEEEecccc
Q 000128 446 HSFSKLRIIKVCQCDNLKHLFSFPMARNLLQLQKLKVSFCE 486 (2123)
Q Consensus 446 ~~~~~L~~L~l~~c~~L~~lp~~~~~~~L~~L~~L~l~~c~ 486 (2123)
+.+++|++|+++++ +++.+|. ..+..+++|++|++++++
T Consensus 274 ~~l~~L~~L~Ls~N-~l~~i~~-~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 274 NQISGLLELEFSRN-QLKSVPD-GIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC
T ss_pred hcccCCCEEECCCC-CCCccCH-HHHhcCCCCCEEEeeCCC
Confidence 45788899999885 6778876 334788999999998875
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.73 E-value=5.9e-17 Score=200.34 Aligned_cols=292 Identities=14% Similarity=0.119 Sum_probs=190.9
Q ss_pred CceEEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCC-CcccCCCCCccEEEcCC
Q 000128 129 DPTAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSL-PSSIGCLISLRTLTLES 207 (2123)
Q Consensus 129 ~l~~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~l-p~~i~~L~~Lr~L~L~~ 207 (2123)
+++.++++++.+..+|..+ .+++++|++++|.+. .++...|.++++|++|++++|.++.+ |..++++++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 5788999999888888766 478999999999887 45444468999999999999999876 67899999999999999
Q ss_pred CCCC-CCccccCCCCCcEEEccCCCCcccccc-cCCCCCccEEeccCCCCCcc--cChhhhCCCCCCCEEEccCcccccc
Q 000128 208 CLLG-DVATIGDLKKLEILSLRHSDVEELPGE-IGQLTRLKLLDLSNCMKLKV--IRPNVISSLSRLEELYMGNSFTEWE 283 (2123)
Q Consensus 208 ~~l~-~p~~i~~L~~L~~L~L~~n~l~~lP~~-i~~L~~L~~L~l~~~~~l~~--lp~~~i~~L~~L~~L~l~~n~~~~~ 283 (2123)
|.++ .|..+. .+|++|++++|++..+|.. ++++++|++|++++|. +.. +++..++.+ +|++|++++|.+..
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n~l~~- 186 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEAKLTG- 186 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSSBCSS-
T ss_pred CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcCCCCCc-
Confidence 9988 565555 7899999999999988765 8889999999999988 542 334447777 89999999988762
Q ss_pred cccccccChhhhCCCCCCCEEEEecCCCCCCChhhhccccceeeeccCCccCCCCCcccceeeecccccCccccchhHHH
Q 000128 284 IEGQSNASLVELKQLSRLTTLEVHIPDAQVMPQDLLSVELERYRICIGDVWSWSGEHETSRRLKLSALNKCIYLGYGMQM 363 (2123)
Q Consensus 284 ~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~p~~i~~ 363 (2123)
.+..+. ++|+.|+++.|.+..++... ...+++|+.|++++..-....+.++.
T Consensus 187 -------l~~~~~--~~L~~L~l~~n~i~~~~~~~------------------l~~l~~L~~L~L~~N~l~~~~~~~~~- 238 (332)
T 2ft3_A 187 -------IPKDLP--ETLNELHLDHNKIQAIELED------------------LLRYSKLYRLGLGHNQIRMIENGSLS- 238 (332)
T ss_dssp -------CCSSSC--SSCSCCBCCSSCCCCCCTTS------------------STTCTTCSCCBCCSSCCCCCCTTGGG-
T ss_pred -------cCcccc--CCCCEEECCCCcCCccCHHH------------------hcCCCCCCEEECCCCcCCcCChhHhh-
Confidence 122222 67888888888877664322 12233444555543221111122232
Q ss_pred hccCCcEEecccccCccccccccCCCCCCCCccEEEeeccCCccEeeccccccCCCcCcccceeeccccccchhhhcCCC
Q 000128 364 LLKGIEDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLFLHNLMRLEMVYRGQL 443 (2123)
Q Consensus 364 ~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~ 443 (2123)
.+++|+.|+++++... .+|. .++.+++|++|++.+|. +..++.. .|.. ..
T Consensus 239 ~l~~L~~L~L~~N~l~--~lp~--~l~~l~~L~~L~l~~N~-l~~~~~~-------~~~~------------------~~ 288 (332)
T 2ft3_A 239 FLPTLRELHLDNNKLS--RVPA--GLPDLKLLQVVYLHTNN-ITKVGVN-------DFCP------------------VG 288 (332)
T ss_dssp GCTTCCEEECCSSCCC--BCCT--TGGGCTTCCEEECCSSC-CCBCCTT-------SSSC------------------SS
T ss_pred CCCCCCEEECCCCcCe--ecCh--hhhcCccCCEEECCCCC-CCccChh-------Hccc------------------cc
Confidence 2567777777765432 2222 13666777777777662 2222110 0100 00
Q ss_pred CcccCCCccEEEEecCCCCC-CCCChhhhhhcCCCcEEEecccc
Q 000128 444 TEHSFSKLRIIKVCQCDNLK-HLFSFPMARNLLQLQKLKVSFCE 486 (2123)
Q Consensus 444 ~~~~~~~L~~L~l~~c~~L~-~lp~~~~~~~L~~L~~L~l~~c~ 486 (2123)
....++.|+.|.+.+++-.. .+++ ..+..+++|+.++++++.
T Consensus 289 ~~~~~~~l~~L~l~~N~~~~~~~~~-~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 289 FGVKRAYYNGISLFNNPVPYWEVQP-ATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCSSSCCBSEEECCSSSSCGGGSCG-GGGTTBCCSTTEEC----
T ss_pred cccccccccceEeecCcccccccCc-ccccccchhhhhhccccc
Confidence 01125667777777755221 3333 456778888888888764
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.72 E-value=2.2e-16 Score=195.04 Aligned_cols=292 Identities=14% Similarity=0.114 Sum_probs=177.2
Q ss_pred CceEEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCC-CcccCCCCCccEEEcCC
Q 000128 129 DPTAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSL-PSSIGCLISLRTLTLES 207 (2123)
Q Consensus 129 ~l~~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~l-p~~i~~L~~Lr~L~L~~ 207 (2123)
+++.++++++.+..+|..+ .+++++|++++|.+. .++...|.++++|++|++++|.++.+ |..++.+++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 5678888888888777655 467888888888877 45554467888888888888888866 77788888888888888
Q ss_pred CCCC-CCccccCCCCCcEEEccCCCCccccc-ccCCCCCccEEeccCCCCCcc--cChhhhCCCCCCCEEEccCcccccc
Q 000128 208 CLLG-DVATIGDLKKLEILSLRHSDVEELPG-EIGQLTRLKLLDLSNCMKLKV--IRPNVISSLSRLEELYMGNSFTEWE 283 (2123)
Q Consensus 208 ~~l~-~p~~i~~L~~L~~L~L~~n~l~~lP~-~i~~L~~L~~L~l~~~~~l~~--lp~~~i~~L~~L~~L~l~~n~~~~~ 283 (2123)
|.++ .|..+. .+|++|++++|.+..+|. .++++++|++|++++|. +.. +.+..++++++|++|++++|.+..
T Consensus 110 n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~- 185 (330)
T 1xku_A 110 NQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNITT- 185 (330)
T ss_dssp SCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCCCS-
T ss_pred CcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCcccc-
Confidence 8887 555544 688888888888887765 47888888888888887 432 333347888888888888887762
Q ss_pred cccccccChhhhCCCCCCCEEEEecCCCCCCChhhhccccceeeeccCCccCCCCCcccceeeecccccCccccchhHHH
Q 000128 284 IEGQSNASLVELKQLSRLTTLEVHIPDAQVMPQDLLSVELERYRICIGDVWSWSGEHETSRRLKLSALNKCIYLGYGMQM 363 (2123)
Q Consensus 284 ~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~p~~i~~ 363 (2123)
.+..+ .++|+.|+++.|.+..++... ...+++|+.|++++..-....+.++.
T Consensus 186 -------l~~~~--~~~L~~L~l~~n~l~~~~~~~------------------~~~l~~L~~L~Ls~n~l~~~~~~~~~- 237 (330)
T 1xku_A 186 -------IPQGL--PPSLTELHLDGNKITKVDAAS------------------LKGLNNLAKLGLSFNSISAVDNGSLA- 237 (330)
T ss_dssp -------CCSSC--CTTCSEEECTTSCCCEECTGG------------------GTTCTTCCEEECCSSCCCEECTTTGG-
T ss_pred -------CCccc--cccCCEEECCCCcCCccCHHH------------------hcCCCCCCEEECCCCcCceeChhhcc-
Confidence 12222 267888888887766543221 11223344444442221111122222
Q ss_pred hccCCcEEecccccCccccccccCCCCCCCCccEEEeeccCCccEeeccccccCCCcCcccceeeccccccchhhhcCCC
Q 000128 364 LLKGIEDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLFLHNLMRLEMVYRGQL 443 (2123)
Q Consensus 364 ~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~ 443 (2123)
.+++|+.|+++++... .+|. .+..+++|++|++.+|. +..++.. .|.. ..
T Consensus 238 ~l~~L~~L~L~~N~l~--~lp~--~l~~l~~L~~L~l~~N~-i~~~~~~-------~f~~------------------~~ 287 (330)
T 1xku_A 238 NTPHLRELHLNNNKLV--KVPG--GLADHKYIQVVYLHNNN-ISAIGSN-------DFCP------------------PG 287 (330)
T ss_dssp GSTTCCEEECCSSCCS--SCCT--TTTTCSSCCEEECCSSC-CCCCCTT-------SSSC------------------SS
T ss_pred CCCCCCEEECCCCcCc--cCCh--hhccCCCcCEEECCCCc-CCccChh-------hcCC------------------cc
Confidence 2566667777665332 2222 13566677777776662 2222110 1100 00
Q ss_pred CcccCCCccEEEEecCCCCC-CCCChhhhhhcCCCcEEEeccc
Q 000128 444 TEHSFSKLRIIKVCQCDNLK-HLFSFPMARNLLQLQKLKVSFC 485 (2123)
Q Consensus 444 ~~~~~~~L~~L~l~~c~~L~-~lp~~~~~~~L~~L~~L~l~~c 485 (2123)
.....+.|+.|++.+.+-.. .+++ ..+..+++++.++++++
T Consensus 288 ~~~~~~~l~~l~l~~N~~~~~~i~~-~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 288 YNTKKASYSGVSLFSNPVQYWEIQP-STFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCTTSCCCSEEECCSSSSCGGGSCG-GGGTTCCCGGGEEC---
T ss_pred cccccccccceEeecCcccccccCc-cccccccceeEEEeccc
Confidence 01124566777776644211 2333 35667778888888765
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.72 E-value=1.8e-17 Score=202.42 Aligned_cols=251 Identities=14% Similarity=0.076 Sum_probs=198.0
Q ss_pred CCceEEEeecCcCCC--ccchhHhhCCCCccEEEeec-CCCC-CCCcccCCCCCccEEEcCCCCCC--CCccccCCCCCc
Q 000128 150 PKLKLFVLFSENLSL--RIPDLFFEGMTELRVLSFTG-FRFP-SLPSSIGCLISLRTLTLESCLLG--DVATIGDLKKLE 223 (2123)
Q Consensus 150 ~~Lr~L~l~~n~~~~--~~p~~~~~~l~~Lr~L~L~~-n~i~-~lp~~i~~L~~Lr~L~L~~~~l~--~p~~i~~L~~L~ 223 (2123)
.+++.|++++|.+.+ .+|..+ .++++|++|++++ |.+. .+|..|+++++|++|++++|.++ .|..++++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhH-hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 689999999999988 788765 8999999999995 8877 78999999999999999999997 678899999999
Q ss_pred EEEccCCCCc-ccccccCCCCCccEEeccCCCCCcccChhhhCCCC-CCCEEEccCcccccccccccccChhhhCCCCCC
Q 000128 224 ILSLRHSDVE-ELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLS-RLEELYMGNSFTEWEIEGQSNASLVELKQLSRL 301 (2123)
Q Consensus 224 ~L~L~~n~l~-~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~-~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L 301 (2123)
+|++++|.+. .+|..++++++|++|++++|...+.+|.. +++++ +|++|++++|.+.+. .+..++.++ |
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~-------~~~~~~~l~-L 199 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGK-------IPPTFANLN-L 199 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEE-------CCGGGGGCC-C
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeecc-------CChHHhCCc-c
Confidence 9999999998 78999999999999999999943478877 88998 999999999988743 356677776 9
Q ss_pred CEEEEecCCCCCCChhhhccccceeeeccCCccCCCCCcccceeeecccccCccccchhHHHhccCCcEEecccccCccc
Q 000128 302 TTLEVHIPDAQVMPQDLLSVELERYRICIGDVWSWSGEHETSRRLKLSALNKCIYLGYGMQMLLKGIEDLYLDELNGFQN 381 (2123)
Q Consensus 302 ~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~p~~i~~~l~~L~~L~L~~~~~~~~ 381 (2123)
+.|+++.|.+...+.. .+. .+++|+.|+++++... .
T Consensus 200 ~~L~Ls~N~l~~~~~~------------------------------------------~~~-~l~~L~~L~L~~N~l~-~ 235 (313)
T 1ogq_A 200 AFVDLSRNMLEGDASV------------------------------------------LFG-SDKNTQKIHLAKNSLA-F 235 (313)
T ss_dssp SEEECCSSEEEECCGG------------------------------------------GCC-TTSCCSEEECCSSEEC-C
T ss_pred cEEECcCCcccCcCCH------------------------------------------HHh-cCCCCCEEECCCCcee-e
Confidence 9999988765432211 111 1567888888875442 3
Q ss_pred cccccCCCCCCCCccEEEeeccCCccEeeccccccCCCcCcccceeeccccccchhhhcCCCCcccCCCccEEEEecCCC
Q 000128 382 ALLELEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLFLHNLMRLEMVYRGQLTEHSFSKLRIIKVCQCDN 461 (2123)
Q Consensus 382 ~~~~l~~~~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~ 461 (2123)
..+.+ ..+++|++|++++|.....++. ....+++|+.|++++..--..++ ..+.+++|+.+++.+++.
T Consensus 236 ~~~~~---~~l~~L~~L~Ls~N~l~~~~p~-----~l~~l~~L~~L~Ls~N~l~~~ip----~~~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 236 DLGKV---GLSKNLNGLDLRNNRIYGTLPQ-----GLTQLKFLHSLNVSFNNLCGEIP----QGGNLQRFDVSAYANNKC 303 (313)
T ss_dssp BGGGC---CCCTTCCEEECCSSCCEECCCG-----GGGGCTTCCEEECCSSEEEEECC----CSTTGGGSCGGGTCSSSE
T ss_pred ecCcc---cccCCCCEEECcCCcccCcCCh-----HHhcCcCCCEEECcCCcccccCC----CCccccccChHHhcCCCC
Confidence 34444 7889999999999864434443 23568999999999864332332 226789999999998776
Q ss_pred CCCCC
Q 000128 462 LKHLF 466 (2123)
Q Consensus 462 L~~lp 466 (2123)
+...|
T Consensus 304 lc~~p 308 (313)
T 1ogq_A 304 LCGSP 308 (313)
T ss_dssp EESTT
T ss_pred ccCCC
Confidence 66544
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.70 E-value=3.4e-18 Score=230.41 Aligned_cols=432 Identities=15% Similarity=0.068 Sum_probs=258.1
Q ss_pred CCCCceEEEeecCcCC---Cccc-----------hhHhhCCCCccEEEeecCCCCC-CCcccCCC--CCccEEEcCCCC-
Q 000128 148 ECPKLKLFVLFSENLS---LRIP-----------DLFFEGMTELRVLSFTGFRFPS-LPSSIGCL--ISLRTLTLESCL- 209 (2123)
Q Consensus 148 ~~~~Lr~L~l~~n~~~---~~~p-----------~~~~~~l~~Lr~L~L~~n~i~~-lp~~i~~L--~~Lr~L~L~~~~- 209 (2123)
.+++|+.|++.++... +.+| ..++..+++|++|+|++|.++. .+..++.. .+|++|++++|.
T Consensus 71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~ 150 (592)
T 3ogk_B 71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG 150 (592)
T ss_dssp HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE
T ss_pred hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC
Confidence 6788999999875321 1122 2233478999999999997762 33445443 359999999887
Q ss_pred CC---CCccccCCCCCcEEEccCCCCcc-----cccccCCCCCccEEeccCCCCCc-----ccChhhhCCCCCCCEEEcc
Q 000128 210 LG---DVATIGDLKKLEILSLRHSDVEE-----LPGEIGQLTRLKLLDLSNCMKLK-----VIRPNVISSLSRLEELYMG 276 (2123)
Q Consensus 210 l~---~p~~i~~L~~L~~L~L~~n~l~~-----lP~~i~~L~~L~~L~l~~~~~l~-----~lp~~~i~~L~~L~~L~l~ 276 (2123)
+. .+..+.++++|++|++++|.+.. ++.....+++|++|++++|. +. .++. .+.++++|++|+++
T Consensus 151 ~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~-~~~~~~~L~~L~L~ 228 (592)
T 3ogk_B 151 FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTE-FAKISPKDLET-IARNCRSLVSVKVG 228 (592)
T ss_dssp EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCC-CSSCCHHHHHH-HHHHCTTCCEEECS
T ss_pred cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccC-CCccCHHHHHH-HHhhCCCCcEEecc
Confidence 33 12334578899999999997652 34445678899999999887 44 3333 25678999999999
Q ss_pred CcccccccccccccChhhhCCCCCCCEEEEecCCCCCCChhhhccccceeeeccCCccCCCCCcccceeeecccccCccc
Q 000128 277 NSFTEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQVMPQDLLSVELERYRICIGDVWSWSGEHETSRRLKLSALNKCIY 356 (2123)
Q Consensus 277 ~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 356 (2123)
+|.+.+ .+..++++++|+.|+++........ ...+.......+++.+.+.+. ....
T Consensus 229 ~~~~~~--------l~~~~~~~~~L~~L~l~~~~~~~~~---------------~~~~~~l~~~~~L~~L~l~~~-~~~~ 284 (592)
T 3ogk_B 229 DFEILE--------LVGFFKAAANLEEFCGGSLNEDIGM---------------PEKYMNLVFPRKLCRLGLSYM-GPNE 284 (592)
T ss_dssp SCBGGG--------GHHHHHHCTTCCEEEECBCCCCTTC---------------TTSSSCCCCCTTCCEEEETTC-CTTT
T ss_pred CccHHH--------HHHHHhhhhHHHhhcccccccccch---------------HHHHHHhhccccccccCcccc-chhH
Confidence 887652 3567788899999998753221100 001112233446666666532 2233
Q ss_pred cchhHHHhccCCcEEecccccCccccccccCCCCCCCCccEEEeeccCCccEeeccccccCCCcCcccceeeccc-----
Q 000128 357 LGYGMQMLLKGIEDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLFLHN----- 431 (2123)
Q Consensus 357 ~p~~i~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~f~~L~~L~l~~----- 431 (2123)
+|..+. .+++|++|++++|......+..+ +..+++|++|++.++.....+. .....+++|++|++.+
T Consensus 285 l~~~~~-~~~~L~~L~Ls~~~l~~~~~~~~--~~~~~~L~~L~L~~~~~~~~l~-----~~~~~~~~L~~L~L~~g~~~~ 356 (592)
T 3ogk_B 285 MPILFP-FAAQIRKLDLLYALLETEDHCTL--IQKCPNLEVLETRNVIGDRGLE-----VLAQYCKQLKRLRIERGADEQ 356 (592)
T ss_dssp GGGGGG-GGGGCCEEEETTCCCCHHHHHHH--HTTCTTCCEEEEEGGGHHHHHH-----HHHHHCTTCCEEEEECCCCSS
T ss_pred HHHHHh-hcCCCcEEecCCCcCCHHHHHHH--HHhCcCCCEEeccCccCHHHHH-----HHHHhCCCCCEEEeecCcccc
Confidence 344443 36889999998876332222221 3778999999998442111111 1123467888888884
Q ss_pred -----cccchhhhcCCCCcccCCCccEEEEecCCCCCCCCChhhhhhcCCCcEEEecc---cccchhhhccCCccccccc
Q 000128 432 -----LMRLEMVYRGQLTEHSFSKLRIIKVCQCDNLKHLFSFPMARNLLQLQKLKVSF---CESLKLIVGKESSETHNVH 503 (2123)
Q Consensus 432 -----~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~~~L~~L~~L~l~~---c~~l~~i~~~~~~~~~~~~ 503 (2123)
+..+....... -...+++|++|.+ .|++++.........++++|++|++++ |+.++..+.. .+...
T Consensus 357 ~~~~~~~~~~~~~~~~-l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~----~~~~~ 430 (592)
T 3ogk_B 357 GMEDEEGLVSQRGLIA-LAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD----NGVRS 430 (592)
T ss_dssp TTSSTTCCCCHHHHHH-HHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH----HHHHH
T ss_pred ccccccCccCHHHHHH-HHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH----HHHHH
Confidence 44333210000 0134788999988 556665432211223488899999974 4444432110 00111
Q ss_pred ccccccccceeecccCcc-ccccccccCCCCCCCccccccccccceecccCcccccccccccCCCccceeeccccccccc
Q 000128 504 EIINFTQLHSLTLQCLPQ-LTSSGFDLERPLLSPTISATTLAFEEVIAEDDSDESLFNNKVIFPNLEKLKLSSINIEKIW 582 (2123)
Q Consensus 504 ~~~~fp~L~~L~l~~~~~-L~~l~~~~~~~~~~p~l~~~~~~~~~~i~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~ 582 (2123)
....+++|+.|++++|.. +..- .+......+++|++|++++|+++...
T Consensus 431 ~~~~~~~L~~L~L~~~~~~l~~~-------------------------------~~~~~~~~~~~L~~L~L~~n~l~~~~ 479 (592)
T 3ogk_B 431 LLIGCKKLRRFAFYLRQGGLTDL-------------------------------GLSYIGQYSPNVRWMLLGYVGESDEG 479 (592)
T ss_dssp HHHHCTTCCEEEEECCGGGCCHH-------------------------------HHHHHHHSCTTCCEEEECSCCSSHHH
T ss_pred HHHhCCCCCEEEEecCCCCccHH-------------------------------HHHHHHHhCccceEeeccCCCCCHHH
Confidence 123467788888766543 1111 00000123788999999999876532
Q ss_pred cccccccccccccCcceEEEecCCCcccccchhhHhhhhccceEEEeecCCcceeeccCccccccccCCcceeeeecc
Q 000128 583 HDQYPLMLNSCSQNLTNLTVETCSRLKFLFSYSMVDSLVRLQQLEIRKCESMEAVIDTTDIEINSVEFPSLHHLRIVD 660 (2123)
Q Consensus 583 ~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~i~~~~~~~~~~~~l~~L~~L~l~~ 660 (2123)
... +...+++|+.|+|++|+ ++......++..+++|+.|++++|+ ++ ..+.......+|.+....+..
T Consensus 480 ~~~----~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it----~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 480 LME----FSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-AS----MTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp HHH----HHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CC----TTCTTGGGGCCTTEEEEEECC
T ss_pred HHH----HHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CC----HHHHHHHHHhCCCcEEEEecC
Confidence 111 12357899999999988 5543333445678999999999988 43 234433344667776666543
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.69 E-value=1.5e-16 Score=194.37 Aligned_cols=174 Identities=22% Similarity=0.217 Sum_probs=98.3
Q ss_pred EEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCC---CcccCCCCCccEEEcCCC
Q 000128 132 AISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSL---PSSIGCLISLRTLTLESC 208 (2123)
Q Consensus 132 ~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~l---p~~i~~L~~Lr~L~L~~~ 208 (2123)
.++.+++.+..+|..+ .+++++|++++|.+. .+|..+|.++++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus 11 ~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGI-PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp EEECCSSCCSSCCSCC-CTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred EEEcCCCCcccCCCCC-CCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 4555555555555533 245666666666654 45555556666666666666666533 344555666666666666
Q ss_pred CCC-CCccccCCCCCcEEEccCCCCccccc--ccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccccccc
Q 000128 209 LLG-DVATIGDLKKLEILSLRHSDVEELPG--EIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIE 285 (2123)
Q Consensus 209 ~l~-~p~~i~~L~~L~~L~L~~n~l~~lP~--~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~ 285 (2123)
.+. .+..+..+++|++|++++|+++.+|. .+..+++|++|++++|. +..+++..++.+++|++|++++|.+.+.
T Consensus 89 ~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~-- 165 (306)
T 2z66_A 89 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQEN-- 165 (306)
T ss_dssp SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGGG--
T ss_pred ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCccccc--
Confidence 655 44455666666666666666665543 45666666666666665 4444444455666666666666655421
Q ss_pred cccccChhhhCCCCCCCEEEEecCCCCCC
Q 000128 286 GQSNASLVELKQLSRLTTLEVHIPDAQVM 314 (2123)
Q Consensus 286 ~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 314 (2123)
..+..++.+++|+.|+++.|.+..+
T Consensus 166 ----~~~~~~~~l~~L~~L~Ls~n~l~~~ 190 (306)
T 2z66_A 166 ----FLPDIFTELRNLTFLDLSQCQLEQL 190 (306)
T ss_dssp ----EECSCCTTCTTCCEEECTTSCCCEE
T ss_pred ----cchhHHhhCcCCCEEECCCCCcCCc
Confidence 1233455566666666666555433
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.68 E-value=5e-16 Score=199.99 Aligned_cols=176 Identities=20% Similarity=0.285 Sum_probs=138.5
Q ss_pred CceEEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCC-cccCCCCCccEEEcCC
Q 000128 129 DPTAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLP-SSIGCLISLRTLTLES 207 (2123)
Q Consensus 129 ~l~~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp-~~i~~L~~Lr~L~L~~ 207 (2123)
..+.++..+..+..+|..+ .++++.|++++|.+.. ++...|.++++|++|++++|.++.++ ..|.++++|++|+|++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGI-STNTRLLNLHENQIQI-IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp TSCEEECCSCCCSSCCSCC-CTTCSEEECCSCCCCE-ECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCCEEEeCCCCcCcCCCCC-CCCCcEEEccCCcCCe-eCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 3457777778888888765 3678888888888773 44444688888999999988888665 6788888899999988
Q ss_pred CCCC-CC-ccccCCCCCcEEEccCCCCccccc-ccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCccccccc
Q 000128 208 CLLG-DV-ATIGDLKKLEILSLRHSDVEELPG-EIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEI 284 (2123)
Q Consensus 208 ~~l~-~p-~~i~~L~~L~~L~L~~n~l~~lP~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~ 284 (2123)
|.++ .+ ..+..+.+|++|++++|+++.+|. .+.++++|++|++++|..+..++.+.+.++++|++|++++|.+..
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-- 199 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-- 199 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS--
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc--
Confidence 8888 44 468888889999998888887765 578888889998888766888888778888888999888887761
Q ss_pred ccccccChhhhCCCCCCCEEEEecCCCCCCC
Q 000128 285 EGQSNASLVELKQLSRLTTLEVHIPDAQVMP 315 (2123)
Q Consensus 285 ~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 315 (2123)
...+..+++|+.|+++.|.+..++
T Consensus 200 -------~~~~~~l~~L~~L~Ls~N~l~~~~ 223 (440)
T 3zyj_A 200 -------IPNLTPLIKLDELDLSGNHLSAIR 223 (440)
T ss_dssp -------CCCCTTCSSCCEEECTTSCCCEEC
T ss_pred -------ccccCCCcccCEEECCCCccCccC
Confidence 234778888888888888776553
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.68 E-value=5.4e-16 Score=200.49 Aligned_cols=177 Identities=24% Similarity=0.288 Sum_probs=145.0
Q ss_pred CceEEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCC-cccCCCCCccEEEcCC
Q 000128 129 DPTAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLP-SSIGCLISLRTLTLES 207 (2123)
Q Consensus 129 ~l~~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp-~~i~~L~~Lr~L~L~~ 207 (2123)
..+.++..+..+..+|..+ .++++.|++++|.+.+ ++...|.++++|++|++++|.++.++ ..|.++.+|++|+|++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQM-IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCCC-CCCccEEECcCCcCce-ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 3467888888888888765 4689999999998874 44444589999999999999998665 6788999999999999
Q ss_pred CCCC-CC-ccccCCCCCcEEEccCCCCccccc-ccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCccccccc
Q 000128 208 CLLG-DV-ATIGDLKKLEILSLRHSDVEELPG-EIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEI 284 (2123)
Q Consensus 208 ~~l~-~p-~~i~~L~~L~~L~L~~n~l~~lP~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~ 284 (2123)
|.++ .+ ..+..+.+|++|++++|+++.+|. .+.++++|++|++++|..++.++.+.+.++++|++|++++|.+..
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-- 210 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-- 210 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS--
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc--
Confidence 9988 44 568889999999999999998876 588899999999998777888888778899999999999988762
Q ss_pred ccccccChhhhCCCCCCCEEEEecCCCCCCCh
Q 000128 285 EGQSNASLVELKQLSRLTTLEVHIPDAQVMPQ 316 (2123)
Q Consensus 285 ~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 316 (2123)
...+..+++|+.|+++.|.+..++.
T Consensus 211 -------~~~~~~l~~L~~L~Ls~N~l~~~~~ 235 (452)
T 3zyi_A 211 -------MPNLTPLVGLEELEMSGNHFPEIRP 235 (452)
T ss_dssp -------CCCCTTCTTCCEEECTTSCCSEECG
T ss_pred -------cccccccccccEEECcCCcCcccCc
Confidence 2357788899999999888766543
No 54
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.68 E-value=7.5e-17 Score=217.23 Aligned_cols=397 Identities=12% Similarity=0.051 Sum_probs=211.4
Q ss_pred cCCCccEEEEecCCCCCCCCChhhhhh-cCC-CcEEEecccccchhhhccCCcccccccccccccccceeecccCccccc
Q 000128 447 SFSKLRIIKVCQCDNLKHLFSFPMARN-LLQ-LQKLKVSFCESLKLIVGKESSETHNVHEIINFTQLHSLTLQCLPQLTS 524 (2123)
Q Consensus 447 ~~~~L~~L~l~~c~~L~~lp~~~~~~~-L~~-L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~ 524 (2123)
.+++|++|++++| .++.... ..+.. ++. |++|++++|..+..... ......+++|++|+++++. +..
T Consensus 110 ~~~~L~~L~L~~~-~i~~~~~-~~l~~~~~~~L~~L~L~~~~~~~~~~l--------~~~~~~~~~L~~L~L~~~~-~~~ 178 (592)
T 3ogk_B 110 NLRQLKSVHFRRM-IVSDLDL-DRLAKARADDLETLKLDKCSGFTTDGL--------LSIVTHCRKIKTLLMEESS-FSE 178 (592)
T ss_dssp HCTTCCEEEEESC-BCCHHHH-HHHHHHHGGGCCEEEEESCEEEEHHHH--------HHHHHHCTTCSEEECTTCE-EEC
T ss_pred hCCCCCeEEeecc-EecHHHH-HHHHHhccccCcEEECcCCCCcCHHHH--------HHHHhhCCCCCEEECcccc-ccC
Confidence 5788888888886 3332211 22333 344 89999988874322110 0011246788888887763 111
Q ss_pred cccccCCCCCCCccccccccccceecccCcccccccccccCCCccceeeccccccccccccccccccccccCcceEEEec
Q 000128 525 SGFDLERPLLSPTISATTLAFEEVIAEDDSDESLFNNKVIFPNLEKLKLSSINIEKIWHDQYPLMLNSCSQNLTNLTVET 604 (2123)
Q Consensus 525 l~~~~~~~~~~p~l~~~~~~~~~~i~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~~l~~L~~L~l~~ 604 (2123)
. .. ..+......+++|++|++++|.++.+.....+. +...+++|+.|++++
T Consensus 179 ~-----~~-----------------------~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L~L~~ 229 (592)
T 3ogk_B 179 K-----DG-----------------------KWLHELAQHNTSLEVLNFYMTEFAKISPKDLET-IARNCRSLVSVKVGD 229 (592)
T ss_dssp C-----CS-----------------------HHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHH-HHHHCTTCCEEECSS
T ss_pred c-----ch-----------------------hHHHHHHhcCCCccEEEeeccCCCccCHHHHHH-HHhhCCCCcEEeccC
Confidence 1 00 000001134789999999988776443222222 234578999999999
Q ss_pred CCCcccccchhhHhhhhccceEEEeecCCcceeeccCccccccccCCcceeeeeccCCCcccccccCCcccccccCCCCC
Q 000128 605 CSRLKFLFSYSMVDSLVRLQQLEIRKCESMEAVIDTTDIEINSVEFPSLHHLRIVDCPNLRSFISVNSSEEKILHTDTQP 684 (2123)
Q Consensus 605 c~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~i~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~~ 684 (2123)
|. +..++ ..+..+++|++|.++++..... ..........+++|+.|.+.++.. ..++
T Consensus 230 ~~-~~~l~--~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~l~~~~~L~~L~l~~~~~-~~l~---------------- 286 (592)
T 3ogk_B 230 FE-ILELV--GFFKAAANLEEFCGGSLNEDIG---MPEKYMNLVFPRKLCRLGLSYMGP-NEMP---------------- 286 (592)
T ss_dssp CB-GGGGH--HHHHHCTTCCEEEECBCCCCTT---CTTSSSCCCCCTTCCEEEETTCCT-TTGG----------------
T ss_pred cc-HHHHH--HHHhhhhHHHhhcccccccccc---hHHHHHHhhccccccccCccccch-hHHH----------------
Confidence 64 44443 3567789999999986443211 112223445677888888866421 1121
Q ss_pred ccccccccCccceeeeccccCcchhccccCCCCccCCccEEEeccCCcccccCCCcHHHHHhcCCccEEEEec-------
Q 000128 685 LFDEKLVLPRLEVLSIDMMDNMRKIWHHQLALNSFSKLKALEVTNCGKLANIFPANIIMRRRLDRLEYLKVDG------- 757 (2123)
Q Consensus 685 ~~~~~~~~~~Le~L~i~~c~~l~~i~~~~~~~~~l~~L~~L~i~~C~~L~~~~p~~~~~~~~l~~L~~L~i~~------- 757 (2123)
.....+++|++|++++|. ++.... ......+++|+.|.+.++ +.+..... +...+++|++|++.+
T Consensus 287 --~~~~~~~~L~~L~Ls~~~-l~~~~~-~~~~~~~~~L~~L~L~~~--~~~~~l~~--~~~~~~~L~~L~L~~g~~~~~~ 358 (592)
T 3ogk_B 287 --ILFPFAAQIRKLDLLYAL-LETEDH-CTLIQKCPNLEVLETRNV--IGDRGLEV--LAQYCKQLKRLRIERGADEQGM 358 (592)
T ss_dssp --GGGGGGGGCCEEEETTCC-CCHHHH-HHHHTTCTTCCEEEEEGG--GHHHHHHH--HHHHCTTCCEEEEECCCCSSTT
T ss_pred --HHHhhcCCCcEEecCCCc-CCHHHH-HHHHHhCcCCCEEeccCc--cCHHHHHH--HHHhCCCCCEEEeecCcccccc
Confidence 112367788999998886 543211 011355678888888843 22211112 557788899999885
Q ss_pred ---CCCcceeecccCCCCCccccccchhhhcccccccccCceecccCcccccccCCCcccccccccEEEEcc---cccce
Q 000128 758 ---CASVEEIIGETSSNGNICVEEEEDEEARRRFVFPRLTWLNLSLLPRLKSFCPGVDISEWPLLKSLGVFG---CDSVE 831 (2123)
Q Consensus 758 ---C~~l~~i~~~~~~~g~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~l~~~~~~~~~~~L~~L~i~~---C~~L~ 831 (2123)
|+.++.. ........+|+|++|.+ +|..++..........+++|++|++.+ |+.++
T Consensus 359 ~~~~~~~~~~-----------------~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~ 420 (592)
T 3ogk_B 359 EDEEGLVSQR-----------------GLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERIT 420 (592)
T ss_dssp SSTTCCCCHH-----------------HHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCS
T ss_pred ccccCccCHH-----------------HHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCcccc
Confidence 7666421 11111234677888877 555554432222222366777777764 33332
Q ss_pred eeccCCccccccCCCCccccCcccccCCccEEEcccCCC-cchhhhccchhh-hhcccccEEEeccccccc-cccCcccc
Q 000128 832 ILFASPEYFSCDSQRPLFVLDPKVAFPGLKELELNKLPN-LLHLWKENSQLS-KALLNLATLEISECDKLE-KLVPSSVS 908 (2123)
Q Consensus 832 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~-l~~i~~~~~~~~-~~l~~L~~L~l~~c~~l~-~lp~~~~~ 908 (2123)
... + ...+......+++|+.|+++.|.+ +.. .+.... ..+++|++|++++|..-. .++..+..
T Consensus 421 ~~p-------~----~~~~~~~~~~~~~L~~L~L~~~~~~l~~---~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 486 (592)
T 3ogk_B 421 DLP-------L----DNGVRSLLIGCKKLRRFAFYLRQGGLTD---LGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRG 486 (592)
T ss_dssp SCC-------C----HHHHHHHHHHCTTCCEEEEECCGGGCCH---HHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTC
T ss_pred Cch-------H----HHHHHHHHHhCCCCCEEEEecCCCCccH---HHHHHHHHhCccceEeeccCCCCCHHHHHHHHhc
Confidence 210 0 000111123356666666665432 222 222221 235666666666654221 12333445
Q ss_pred cccccEEeeccCCCcccccchhhHHHhhhcceeEEcccc
Q 000128 909 LENLVTLEVSKCNELIHLMTLSTAESLVKLNRMNVIDCK 947 (2123)
Q Consensus 909 l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~ 947 (2123)
+++|++|++++|+ ++.......+..+++|+.|++++|.
T Consensus 487 ~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 487 CPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred CcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 5666666666665 4443333334555666666666665
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.67 E-value=2.4e-15 Score=198.33 Aligned_cols=258 Identities=20% Similarity=0.133 Sum_probs=189.8
Q ss_pred CceEEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcCCC
Q 000128 129 DPTAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESC 208 (2123)
Q Consensus 129 ~l~~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~ 208 (2123)
+++.|++++|.+..+|..+. ++|++|++++|.+. .+|. .+++|++|++++|.++.+|. .+++|++|++++|
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC
Confidence 58899999999999988764 89999999999887 6775 57899999999999999987 7789999999999
Q ss_pred CCCCCccccCCCCCcEEEccCCCCcccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCccccccccccc
Q 000128 209 LLGDVATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQS 288 (2123)
Q Consensus 209 ~l~~p~~i~~L~~L~~L~L~~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~~~ 288 (2123)
.++.++. .+.+|++|++++|+++.+|.. +++|++|++++|. +..+|. .+.+|+.|++++|.+..
T Consensus 112 ~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~----~~~~L~~L~L~~N~l~~------ 175 (622)
T 3g06_A 112 PLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPA----LPSELCKLWAYNNQLTS------ 175 (622)
T ss_dssp CCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSC------
T ss_pred cCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCC----ccCCCCEEECCCCCCCC------
Confidence 9984333 678999999999999999975 4889999999998 777875 35789999999998872
Q ss_pred ccChhhhCCCCCCCEEEEecCCCCCCChhhhccccceeeeccCCccCCCCCcccceeeecccccCccccchhHHHhccCC
Q 000128 289 NASLVELKQLSRLTTLEVHIPDAQVMPQDLLSVELERYRICIGDVWSWSGEHETSRRLKLSALNKCIYLGYGMQMLLKGI 368 (2123)
Q Consensus 289 ~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~p~~i~~~l~~L 368 (2123)
.+ ..+++|+.|+++.|.+..+|.. +++|
T Consensus 176 --l~---~~~~~L~~L~Ls~N~l~~l~~~-----------------------------------------------~~~L 203 (622)
T 3g06_A 176 --LP---MLPSGLQELSVSDNQLASLPTL-----------------------------------------------PSEL 203 (622)
T ss_dssp --CC---CCCTTCCEEECCSSCCSCCCCC-----------------------------------------------CTTC
T ss_pred --Cc---ccCCCCcEEECCCCCCCCCCCc-----------------------------------------------cchh
Confidence 12 4568899999998887765431 1344
Q ss_pred cEEecccccCccccccccCCCCCCCCccEEEeeccCCccEeeccccccCCCcCcccceeeccccccchhhhcCCCCcccC
Q 000128 369 EDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLFLHNLMRLEMVYRGQLTEHSF 448 (2123)
Q Consensus 369 ~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~ 448 (2123)
+.|+++++... .++ ..+++|+.|++++|. +..++ ..+++|+.|++++. .+..++ . .+
T Consensus 204 ~~L~L~~N~l~--~l~-----~~~~~L~~L~Ls~N~-L~~lp--------~~l~~L~~L~Ls~N-~L~~lp-----~-~~ 260 (622)
T 3g06_A 204 YKLWAYNNRLT--SLP-----ALPSGLKELIVSGNR-LTSLP--------VLPSELKELMVSGN-RLTSLP-----M-LP 260 (622)
T ss_dssp CEEECCSSCCS--SCC-----CCCTTCCEEECCSSC-CSCCC--------CCCTTCCEEECCSS-CCSCCC-----C-CC
T ss_pred hEEECcCCccc--ccC-----CCCCCCCEEEccCCc-cCcCC--------CCCCcCcEEECCCC-CCCcCC-----c-cc
Confidence 44444443221 111 123556666666552 22221 23456666666653 333332 1 46
Q ss_pred CCccEEEEecCCCCCCCCChhhhhhcCCCcEEEecccccch
Q 000128 449 SKLRIIKVCQCDNLKHLFSFPMARNLLQLQKLKVSFCESLK 489 (2123)
Q Consensus 449 ~~L~~L~l~~c~~L~~lp~~~~~~~L~~L~~L~l~~c~~l~ 489 (2123)
++|+.|++++| +++.+|. .+.++++|+.|++++++-..
T Consensus 261 ~~L~~L~Ls~N-~L~~lp~--~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 261 SGLLSLSVYRN-QLTRLPE--SLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp TTCCEEECCSS-CCCSCCG--GGGGSCTTCEEECCSCCCCH
T ss_pred ccCcEEeCCCC-CCCcCCH--HHhhccccCEEEecCCCCCC
Confidence 88999999985 7888875 57899999999999986443
No 56
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.67 E-value=9.2e-18 Score=226.32 Aligned_cols=214 Identities=17% Similarity=0.163 Sum_probs=126.7
Q ss_pred cCCCccceeeccccccccccccccccccccccCcceEEEecCCCcccccchhhHhhhhccceEEEeecCCcceeeccCcc
Q 000128 564 IFPNLEKLKLSSINIEKIWHDQYPLMLNSCSQNLTNLTVETCSRLKFLFSYSMVDSLVRLQQLEIRKCESMEAVIDTTDI 643 (2123)
Q Consensus 564 ~l~~L~~L~L~~~~l~~i~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~i~~~~~~ 643 (2123)
.+++|++|++++|.++....... ...+++|++|++++|..+..........++++|++|++++|. +... ....+
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l----~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~-~~~~l 176 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELI----AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDV-SGHWL 176 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHH----HHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECC-CGGGG
T ss_pred hCCCCCeEEeeCcEEcHHHHHHH----HHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCc-chHHH
Confidence 47899999999997665432221 225789999999999877653333455678999999999887 4322 11223
Q ss_pred ccccccCCcceeeeeccCCCcccccccCCcccccccCCCCCcccc-ccccCccceeeeccccCcchhccccCCCCccCCc
Q 000128 644 EINSVEFPSLHHLRIVDCPNLRSFISVNSSEEKILHTDTQPLFDE-KLVLPRLEVLSIDMMDNMRKIWHHQLALNSFSKL 722 (2123)
Q Consensus 644 ~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Le~L~i~~c~~l~~i~~~~~~~~~l~~L 722 (2123)
......+++|++|++++|. ..+.. ..+.. ...+++|+.|++++|..++.+. .....+++|
T Consensus 177 ~~~~~~~~~L~~L~l~~~~--~~~~~--------------~~l~~l~~~~~~L~~L~L~~~~~~~~l~---~~~~~~~~L 237 (594)
T 2p1m_B 177 SHFPDTYTSLVSLNISCLA--SEVSF--------------SALERLVTRCPNLKSLKLNRAVPLEKLA---TLLQRAPQL 237 (594)
T ss_dssp GGSCTTCCCCCEEECTTCC--SCCCH--------------HHHHHHHHHCTTCCEEECCTTSCHHHHH---HHHHHCTTC
T ss_pred HHHhhcCCcCcEEEecccC--CcCCH--------------HHHHHHHHhCCCCcEEecCCCCcHHHHH---HHHhcCCcc
Confidence 3334467889999998875 11100 00011 1246888888888886666542 233455788
Q ss_pred cEEEeccCCc------ccccCCCcHHHHHhcCCccEEE-EecCCCcceeecccCCCCCccccccchhhhcccccccccCc
Q 000128 723 KALEVTNCGK------LANIFPANIIMRRRLDRLEYLK-VDGCASVEEIIGETSSNGNICVEEEEDEEARRRFVFPRLTW 795 (2123)
Q Consensus 723 ~~L~i~~C~~------L~~~~p~~~~~~~~l~~L~~L~-i~~C~~l~~i~~~~~~~g~~~~~~~~~~~~~~~~~~p~L~~ 795 (2123)
+.|.+..|.. +..+.+ .+.++++|+.|. +.+.. ..........+++|++
T Consensus 238 ~~L~l~~~~~~~~~~~~~~l~~----~l~~~~~L~~Ls~~~~~~--------------------~~~l~~~~~~~~~L~~ 293 (594)
T 2p1m_B 238 EELGTGGYTAEVRPDVYSGLSV----ALSGCKELRCLSGFWDAV--------------------PAYLPAVYSVCSRLTT 293 (594)
T ss_dssp SEEECSBCCCCCCHHHHHHHHH----HHHTCTTCCEEECCBTCC--------------------GGGGGGGHHHHTTCCE
T ss_pred eEcccccccCccchhhHHHHHH----HHhcCCCcccccCCcccc--------------------hhhHHHHHHhhCCCCE
Confidence 8888777643 111110 234555555551 21110 0111112235788888
Q ss_pred eecccCcccccccCCCcccccccccEEEEccc
Q 000128 796 LNLSLLPRLKSFCPGVDISEWPLLKSLGVFGC 827 (2123)
Q Consensus 796 L~L~~~~~L~~l~~~~~~~~~~~L~~L~i~~C 827 (2123)
|.|++|. +...........+++|++|++.+|
T Consensus 294 L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 294 LNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp EECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred EEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc
Confidence 9988887 554322222235788899988887
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.67 E-value=4.5e-16 Score=194.27 Aligned_cols=250 Identities=16% Similarity=0.161 Sum_probs=188.0
Q ss_pred CCCceEEEccCCCCccCCCC-C-CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcc-cCCCCCccEE
Q 000128 127 HKDPTAISIPFRGIYEFPER-L-ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSS-IGCLISLRTL 203 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp~~-~-~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~-i~~L~~Lr~L 203 (2123)
.+++++|++++|.+..++.. + ++++|++|++++|.+.+ ++...|.++++|++|++++|.++.+|.. ++++++|++|
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 129 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFL 129 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEE
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc-cCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEE
Confidence 46899999999999988763 3 89999999999999874 5444568999999999999999999876 8999999999
Q ss_pred EcCCCCCC-CCc--cccCCCCCcEEEccCC-CCccc-ccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCc
Q 000128 204 TLESCLLG-DVA--TIGDLKKLEILSLRHS-DVEEL-PGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNS 278 (2123)
Q Consensus 204 ~L~~~~l~-~p~--~i~~L~~L~~L~L~~n-~l~~l-P~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n 278 (2123)
++++|.++ .+. .++++++|++|++++| .+..+ |..++++++|++|++++|. +..+++..++++++|++|++++|
T Consensus 130 ~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n 208 (353)
T 2z80_A 130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKSLKSIQNVSHLILHMK 208 (353)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTTTTTCSEEEEEEEECS
T ss_pred ECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHHHHhccccCCeecCCCC
Confidence 99999998 444 6899999999999999 57877 4579999999999999998 66664445999999999999999
Q ss_pred ccccccccccccChhhhCCCCCCCEEEEecCCCCCCChhhhccccceeeeccCCccCCCCCcccceeeecccccC----c
Q 000128 279 FTEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQVMPQDLLSVELERYRICIGDVWSWSGEHETSRRLKLSALNK----C 354 (2123)
Q Consensus 279 ~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~----~ 354 (2123)
.+... ....++.+++|+.|+++.|.+..++..... .......++.+.+.++.- .
T Consensus 209 ~l~~~-------~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~---------------~~~~~~~l~~l~L~~~~l~~~~l 266 (353)
T 2z80_A 209 QHILL-------LEIFVDVTSSVECLELRDTDLDTFHFSELS---------------TGETNSLIKKFTFRNVKITDESL 266 (353)
T ss_dssp CSTTH-------HHHHHHHTTTEEEEEEESCBCTTCCCC---------------------CCCCCCEEEEESCBCCHHHH
T ss_pred ccccc-------hhhhhhhcccccEEECCCCccccccccccc---------------cccccchhhccccccccccCcch
Confidence 87521 122345689999999999988766432100 001112333444443221 1
Q ss_pred cccchhHHHhccCCcEEecccccCccccccccCCCCCCCCccEEEeeccC
Q 000128 355 IYLGYGMQMLLKGIEDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNVC 404 (2123)
Q Consensus 355 ~~~p~~i~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~ 404 (2123)
..+|.++.. +++|+.|+++++... .+|.- .++.+++|++|++.+|.
T Consensus 267 ~~l~~~l~~-l~~L~~L~Ls~N~l~--~i~~~-~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 267 FQVMKLLNQ-ISGLLELEFSRNQLK--SVPDG-IFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HHHHHHHHT-CTTCCEEECCSSCCC--CCCTT-TTTTCTTCCEEECCSSC
T ss_pred hhhHHHHhc-ccCCCEEECCCCCCC--ccCHH-HHhcCCCCCEEEeeCCC
Confidence 234555554 688999999886543 23321 24778889999998883
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.66 E-value=5.3e-16 Score=187.25 Aligned_cols=194 Identities=22% Similarity=0.297 Sum_probs=161.9
Q ss_pred CCCceEEEccCCCCccCCCC-C-CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCC-CCCC-CcccCCCCCccE
Q 000128 127 HKDPTAISIPFRGIYEFPER-L-ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFR-FPSL-PSSIGCLISLRT 202 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp~~-~-~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~-i~~l-p~~i~~L~~Lr~ 202 (2123)
++++++|++++|.+..++.. + .+++|++|++++|.+.+..|. .|..+++|++|++++|. +..+ |..+..+++|++
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA-AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHh-hcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 57899999999999977753 3 789999999999988744344 45899999999999997 8877 678999999999
Q ss_pred EEcCCCCCC-C-CccccCCCCCcEEEccCCCCcccccc-cCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcc
Q 000128 203 LTLESCLLG-D-VATIGDLKKLEILSLRHSDVEELPGE-IGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSF 279 (2123)
Q Consensus 203 L~L~~~~l~-~-p~~i~~L~~L~~L~L~~n~l~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~ 279 (2123)
|++++|.++ . +..+.++++|++|++++|+++.+|.. ++++++|++|++++|. +..+|...+..+++|++|++++|.
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~ 188 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNR 188 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCCCc
Confidence 999999988 3 57789999999999999999988765 8899999999999998 888888778999999999999998
Q ss_pred cccccccccccChhhhCCCCCCCEEEEecCCCCCCChhh--hccccceeeec
Q 000128 280 TEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQVMPQDL--LSVELERYRIC 329 (2123)
Q Consensus 280 ~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~i~ 329 (2123)
+.+ ..+..++++++|+.|+++.|.+..++... ...+|+.+.+.
T Consensus 189 l~~-------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 233 (285)
T 1ozn_A 189 VAH-------VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233 (285)
T ss_dssp CCE-------ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECC
T ss_pred ccc-------cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEecc
Confidence 873 23667888999999999999998887654 23444444443
No 59
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.66 E-value=5.3e-18 Score=220.80 Aligned_cols=374 Identities=18% Similarity=0.131 Sum_probs=219.6
Q ss_pred CCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCC-----CCCcccCCCCCccEEEcCCCCCC--CCccc-cCCC-
Q 000128 150 PKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFP-----SLPSSIGCLISLRTLTLESCLLG--DVATI-GDLK- 220 (2123)
Q Consensus 150 ~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~-----~lp~~i~~L~~Lr~L~L~~~~l~--~p~~i-~~L~- 220 (2123)
++|++|++++|.+.......++..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 578899999888775445555788999999999999988 45778888999999999999987 23333 3344
Q ss_pred ---CCcEEEccCCCCc-----ccccccCCCCCccEEeccCCCCCccc-----ChhhhCCCCCCCEEEccCcccccccccc
Q 000128 221 ---KLEILSLRHSDVE-----ELPGEIGQLTRLKLLDLSNCMKLKVI-----RPNVISSLSRLEELYMGNSFTEWEIEGQ 287 (2123)
Q Consensus 221 ---~L~~L~L~~n~l~-----~lP~~i~~L~~L~~L~l~~~~~l~~l-----p~~~i~~L~~L~~L~l~~n~~~~~~~~~ 287 (2123)
+|++|++++|++. .+|..+.++++|++|++++|. +... ........++|++|++++|.+....
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~--- 158 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS--- 158 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG---
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH---
Confidence 6999999999888 568889999999999999998 5432 2222334678999999999876211
Q ss_pred cccChhhhCCCCCCCEEEEecCCCCCCChhhhccccceeeeccCCccCCCCCcccceeeecccccCccccchhHHHhccC
Q 000128 288 SNASLVELKQLSRLTTLEVHIPDAQVMPQDLLSVELERYRICIGDVWSWSGEHETSRRLKLSALNKCIYLGYGMQMLLKG 367 (2123)
Q Consensus 288 ~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~p~~i~~~l~~ 367 (2123)
.......++.+++|+.|+++.|.+....... +...+....++
T Consensus 159 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~--------------------------------------l~~~l~~~~~~ 200 (461)
T 1z7x_W 159 CEPLASVLRAKPDFKELTVSNNDINEAGVRV--------------------------------------LCQGLKDSPCQ 200 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHH--------------------------------------HHHHHHHSCCC
T ss_pred HHHHHHHHhhCCCCCEEECcCCCcchHHHHH--------------------------------------HHHHHhcCCCC
Confidence 1123455677889999999877653211110 01111112346
Q ss_pred CcEEecccccCcccccccc-CCCCCCCCccEEEeeccCCccEeeccccccCCCcCcccceeeccccccchhhhcCCCCcc
Q 000128 368 IEDLYLDELNGFQNALLEL-EDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLFLHNLMRLEMVYRGQLTEH 446 (2123)
Q Consensus 368 L~~L~L~~~~~~~~~~~~l-~~~~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~ 446 (2123)
|++|++++|.........+ ..+..+++|++|++++|. +.... ...+.. ....
T Consensus 201 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~------------------------~~~l~~--~~~~ 253 (461)
T 1z7x_W 201 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVG------------------------MAELCP--GLLH 253 (461)
T ss_dssp CCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHH------------------------HHHHHH--HHTS
T ss_pred ceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHH------------------------HHHHHH--HHhc
Confidence 7777777764432211111 012456777777777762 11100 000000 0011
Q ss_pred cCCCccEEEEecCCCCCC-----CCChhhhhhcCCCcEEEecccccchhhhccCCcccccccccccccccceeecccCcc
Q 000128 447 SFSKLRIIKVCQCDNLKH-----LFSFPMARNLLQLQKLKVSFCESLKLIVGKESSETHNVHEIINFTQLHSLTLQCLPQ 521 (2123)
Q Consensus 447 ~~~~L~~L~l~~c~~L~~-----lp~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~ 521 (2123)
.+++|++|++.+| .++. ++. .+..+++|++|+++++. +....... ....-....++|+.|+++++.
T Consensus 254 ~~~~L~~L~L~~n-~l~~~~~~~l~~--~l~~~~~L~~L~Ls~n~-i~~~~~~~----l~~~l~~~~~~L~~L~L~~n~- 324 (461)
T 1z7x_W 254 PSSRLRTLWIWEC-GITAKGCGDLCR--VLRAKESLKELSLAGNE-LGDEGARL----LCETLLEPGCQLESLWVKSCS- 324 (461)
T ss_dssp TTCCCCEEECTTS-CCCHHHHHHHHH--HHHHCTTCCEEECTTCC-CHHHHHHH----HHHHHTSTTCCCCEEECTTSC-
T ss_pred CCCCceEEECcCC-CCCHHHHHHHHH--HHhhCCCcceEECCCCC-CchHHHHH----HHHHhccCCccceeeEcCCCC-
Confidence 2466667777665 4444 222 34567778888887763 22211000 000000112577777777664
Q ss_pred ccccccccCCCCCCCccccccccccceecccCcccccccccccCCCccceeeccccccccccccccccccccccCcceEE
Q 000128 522 LTSSGFDLERPLLSPTISATTLAFEEVIAEDDSDESLFNNKVIFPNLEKLKLSSINIEKIWHDQYPLMLNSCSQNLTNLT 601 (2123)
Q Consensus 522 L~~l~~~~~~~~~~p~l~~~~~~~~~~i~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~~l~~L~~L~ 601 (2123)
+... .+..+......+++|++|++++|.+...........+....++|+.|+
T Consensus 325 l~~~----------------------------~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 376 (461)
T 1z7x_W 325 FTAA----------------------------CCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW 376 (461)
T ss_dssp CBGG----------------------------GHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred CchH----------------------------HHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEE
Confidence 2111 000011111236788888888887665422211110111256888888
Q ss_pred EecCCCccc-----ccchhhHhhhhccceEEEeecC
Q 000128 602 VETCSRLKF-----LFSYSMVDSLVRLQQLEIRKCE 632 (2123)
Q Consensus 602 l~~c~~L~~-----l~~~~~~~~l~~L~~L~I~~C~ 632 (2123)
+++|. ++. ++ ..+..+++|++|++++|+
T Consensus 377 L~~n~-i~~~~~~~l~--~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 377 LADCD-VSDSSCSSLA--ATLLANHSLRELDLSNNC 409 (461)
T ss_dssp CTTSC-CCHHHHHHHH--HHHHHCCCCCEEECCSSS
T ss_pred CCCCC-CChhhHHHHH--HHHHhCCCccEEECCCCC
Confidence 88863 442 21 234457888888888875
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.66 E-value=1.4e-15 Score=183.68 Aligned_cols=219 Identities=21% Similarity=0.249 Sum_probs=173.2
Q ss_pred ceEEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCC-CcccCCCCCccEEEcCCC
Q 000128 130 PTAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSL-PSSIGCLISLRTLTLESC 208 (2123)
Q Consensus 130 l~~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~l-p~~i~~L~~Lr~L~L~~~ 208 (2123)
.+.++.+++.+..+|..+ .+++++|++++|.+. .++...|..+++|++|++++|.++.+ |..++.+++|++|++++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVGI-PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp SCEEECCSSCCSSCCTTC-CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred CeEEEcCcCCcccCCcCC-CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 367888888898888655 579999999999987 46655668999999999999999977 778999999999999999
Q ss_pred C-CC-C-CccccCCCCCcEEEccCCCCccc-ccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCccccccc
Q 000128 209 L-LG-D-VATIGDLKKLEILSLRHSDVEEL-PGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEI 284 (2123)
Q Consensus 209 ~-l~-~-p~~i~~L~~L~~L~L~~n~l~~l-P~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~ 284 (2123)
. ++ . +..+..+.+|++|++++|++..+ |..+.++++|++|++++|. +..++...++++++|++|++++|.+..
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-- 167 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISS-- 167 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCE--
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccc--
Confidence 7 77 3 57899999999999999999977 5668999999999999998 788887778999999999999998872
Q ss_pred ccccccChhhhCCCCCCCEEEEecCCCCCCChhhhccccceeeeccCCccCCCCCcccceeeecccccCccccchhHHHh
Q 000128 285 EGQSNASLVELKQLSRLTTLEVHIPDAQVMPQDLLSVELERYRICIGDVWSWSGEHETSRRLKLSALNKCIYLGYGMQML 364 (2123)
Q Consensus 285 ~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~p~~i~~~ 364 (2123)
.....+..+++|+.|+++.|.+..+... ++. .
T Consensus 168 -----~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------------------------------------~~~-~ 199 (285)
T 1ozn_A 168 -----VPERAFRGLHSLDRLLLHQNRVAHVHPH------------------------------------------AFR-D 199 (285)
T ss_dssp -----ECTTTTTTCTTCCEEECCSSCCCEECTT------------------------------------------TTT-T
T ss_pred -----cCHHHhcCccccCEEECCCCcccccCHh------------------------------------------Hcc-C
Confidence 2234578899999999998876544211 111 1
Q ss_pred ccCCcEEecccccCccccccccCCCCCCCCccEEEeeccC
Q 000128 365 LKGIEDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNVC 404 (2123)
Q Consensus 365 l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~ 404 (2123)
+++|+.|+++++... ...+. .+..+++|+.|++.+|.
T Consensus 200 l~~L~~L~l~~n~l~-~~~~~--~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 200 LGRLMTLYLFANNLS-ALPTE--ALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CTTCCEEECCSSCCS-CCCHH--HHTTCTTCCEEECCSSC
T ss_pred cccccEeeCCCCcCC-cCCHH--HcccCcccCEEeccCCC
Confidence 456777777775432 22222 13678888888888873
No 61
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.66 E-value=3.8e-17 Score=220.28 Aligned_cols=401 Identities=14% Similarity=0.109 Sum_probs=215.4
Q ss_pred cCCCccEEEEecCCCCCCCCChhhhhhcCCCcEEEecccccchhhhccCCcccccccccccccccceeecccCccccccc
Q 000128 447 SFSKLRIIKVCQCDNLKHLFSFPMARNLLQLQKLKVSFCESLKLIVGKESSETHNVHEIINFTQLHSLTLQCLPQLTSSG 526 (2123)
Q Consensus 447 ~~~~L~~L~l~~c~~L~~lp~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~l~ 526 (2123)
.+++|++|++++|. +...........+++|++|++++|..+...... .-...+++|++|+++++. +....
T Consensus 103 ~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~--------~~~~~~~~L~~L~L~~~~-i~~~~ 172 (594)
T 2p1m_B 103 SYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLA--------AIAATCRNLKELDLRESD-VDDVS 172 (594)
T ss_dssp HCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHH--------HHHHHCTTCCEEECTTCE-EECCC
T ss_pred hCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHH--------HHHHhCCCCCEEeCcCCc-cCCcc
Confidence 46788888888864 433221112236788888888888655432100 011246788888887765 32220
Q ss_pred cccCCCCCCCccccccccccceecccCcccccccccccCCCccceeeccccccccccccccccccccccCcceEEEecCC
Q 000128 527 FDLERPLLSPTISATTLAFEEVIAEDDSDESLFNNKVIFPNLEKLKLSSINIEKIWHDQYPLMLNSCSQNLTNLTVETCS 606 (2123)
Q Consensus 527 ~~~~~~~~~p~l~~~~~~~~~~i~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~~l~~L~~L~l~~c~ 606 (2123)
. ..+......+++|++|++++|. ..+....... +...+++|+.|++++|.
T Consensus 173 -----~-----------------------~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~-l~~~~~~L~~L~L~~~~ 222 (594)
T 2p1m_B 173 -----G-----------------------HWLSHFPDTYTSLVSLNISCLA-SEVSFSALER-LVTRCPNLKSLKLNRAV 222 (594)
T ss_dssp -----G-----------------------GGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHH-HHHHCTTCCEEECCTTS
T ss_pred -----h-----------------------HHHHHHhhcCCcCcEEEecccC-CcCCHHHHHH-HHHhCCCCcEEecCCCC
Confidence 0 0000111246789999998886 2221111111 22346899999999987
Q ss_pred CcccccchhhHhhhhccceEEEeecCCcceeeccCccccccccCCcceee-eeccCCCcccccccCCcccccccCCCCCc
Q 000128 607 RLKFLFSYSMVDSLVRLQQLEIRKCESMEAVIDTTDIEINSVEFPSLHHL-RIVDCPNLRSFISVNSSEEKILHTDTQPL 685 (2123)
Q Consensus 607 ~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~i~~~~~~~~~~~~l~~L~~L-~l~~c~~L~~~~~~~~~~~~~~~~~~~~~ 685 (2123)
.+..++ ..+..+++|++|.+++|..-...-...++.....++++|+.| .+.+... ..+ .
T Consensus 223 ~~~~l~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l----------------~- 282 (594)
T 2p1m_B 223 PLEKLA--TLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-AYL----------------P- 282 (594)
T ss_dssp CHHHHH--HHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-GGG----------------G-
T ss_pred cHHHHH--HHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccch-hhH----------------H-
Confidence 777643 345678889999887765310000001111122344555554 1211100 001 0
Q ss_pred cccccccCccceeeeccccCcchhccccCCCCccCCccEEEeccCCcccccCCCcHHHHHhcCCccEEEEecCC------
Q 000128 686 FDEKLVLPRLEVLSIDMMDNMRKIWHHQLALNSFSKLKALEVTNCGKLANIFPANIIMRRRLDRLEYLKVDGCA------ 759 (2123)
Q Consensus 686 ~~~~~~~~~Le~L~i~~c~~l~~i~~~~~~~~~l~~L~~L~i~~C~~L~~~~p~~~~~~~~l~~L~~L~i~~C~------ 759 (2123)
.....+++|+.|++++|. ++.... ......+++|++|.+.+| +.+..... +...+++|++|++.+|.
T Consensus 283 -~~~~~~~~L~~L~L~~~~-l~~~~l-~~~~~~~~~L~~L~l~~~--~~~~~l~~--l~~~~~~L~~L~L~~~~~~g~~~ 355 (594)
T 2p1m_B 283 -AVYSVCSRLTTLNLSYAT-VQSYDL-VKLLCQCPKLQRLWVLDY--IEDAGLEV--LASTCKDLRELRVFPSEPFVMEP 355 (594)
T ss_dssp -GGHHHHTTCCEEECTTCC-CCHHHH-HHHHTTCTTCCEEEEEGG--GHHHHHHH--HHHHCTTCCEEEEECSCTTCSSC
T ss_pred -HHHHhhCCCCEEEccCCC-CCHHHH-HHHHhcCCCcCEEeCcCc--cCHHHHHH--HHHhCCCCCEEEEecCccccccc
Confidence 011257889999999887 554210 111345688999999988 33211111 45678899999996653
Q ss_pred --CcceeecccCCCCCccccccchhhhcccccccccCceecccCcccccccCCCcccccccccEEEEc-----cccccee
Q 000128 760 --SVEEIIGETSSNGNICVEEEEDEEARRRFVFPRLTWLNLSLLPRLKSFCPGVDISEWPLLKSLGVF-----GCDSVEI 832 (2123)
Q Consensus 760 --~l~~i~~~~~~~g~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~l~~~~~~~~~~~L~~L~i~-----~C~~L~~ 832 (2123)
.+.. .........+|+|++| ..+|..++..........+++|++|++. +|.+++.
T Consensus 356 ~~~l~~-----------------~~l~~l~~~~~~L~~L-~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~ 417 (594)
T 2p1m_B 356 NVALTE-----------------QGLVSVSMGCPKLESV-LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTL 417 (594)
T ss_dssp SSCCCH-----------------HHHHHHHHHCTTCCEE-EEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTC
T ss_pred CCCCCH-----------------HHHHHHHHhchhHHHH-HHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccC
Confidence 2221 1111112347888888 4455566543332222246788888887 5665542
Q ss_pred eccCCccccccCCCCccccCcccccCCccEEEcccCCCcchhhhccchhhh-hcccccEEEeccccccccccCcc-cccc
Q 000128 833 LFASPEYFSCDSQRPLFVLDPKVAFPGLKELELNKLPNLLHLWKENSQLSK-ALLNLATLEISECDKLEKLVPSS-VSLE 910 (2123)
Q Consensus 833 ~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~-~l~~L~~L~l~~c~~l~~lp~~~-~~l~ 910 (2123)
.. + ...+......+++|+.|++++ .++. .+..... .+++|+.|++++|..-...+..+ ..++
T Consensus 418 ~~-------~----~~~~~~l~~~~~~L~~L~L~~--~l~~---~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 481 (594)
T 2p1m_B 418 EP-------L----DIGFGAIVEHCKDLRRLSLSG--LLTD---KVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCD 481 (594)
T ss_dssp CC-------T----HHHHHHHHHHCTTCCEEECCS--SCCH---HHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCT
T ss_pred Cc-------h----hhHHHHHHhhCCCccEEeecC--cccH---HHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCC
Confidence 10 0 000111134456788888865 3333 2222222 36778888887776322222222 4577
Q ss_pred cccEEeeccCCCcccccchhhHHHhhhcceeEEcccccc
Q 000128 911 NLVTLEVSKCNELIHLMTLSTAESLVKLNRMNVIDCKML 949 (2123)
Q Consensus 911 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l 949 (2123)
+|++|++++|+ ++..+....+..+++|+.|++++|+..
T Consensus 482 ~L~~L~L~~n~-~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 482 SLRKLEIRDCP-FGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp TCCEEEEESCS-CCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred CcCEEECcCCC-CcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 78888888886 344433334455777888888887653
No 62
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.63 E-value=1.7e-15 Score=184.97 Aligned_cols=222 Identities=18% Similarity=0.168 Sum_probs=179.2
Q ss_pred CCCceEEEccCCCCccCCCCC--CCCCceEEEeecCcCCC--ccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccE
Q 000128 127 HKDPTAISIPFRGIYEFPERL--ECPKLKLFVLFSENLSL--RIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRT 202 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp~~~--~~~~Lr~L~l~~n~~~~--~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~ 202 (2123)
++++++|++++|.+..+|... ++++|++|++++|.+.. ..+..+ ..+++|++|++++|.+..+|..+..+++|++
T Consensus 27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 105 (306)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEECCSCSEEEEEEEEETCTTCCE
T ss_pred CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEECCCCccccChhhcCCCCCCCE
Confidence 468999999999999998764 89999999999998863 235555 5799999999999999999999999999999
Q ss_pred EEcCCCCCC-CC--ccccCCCCCcEEEccCCCCccc-ccccCCCCCccEEeccCCCCCcc--cChhhhCCCCCCCEEEcc
Q 000128 203 LTLESCLLG-DV--ATIGDLKKLEILSLRHSDVEEL-PGEIGQLTRLKLLDLSNCMKLKV--IRPNVISSLSRLEELYMG 276 (2123)
Q Consensus 203 L~L~~~~l~-~p--~~i~~L~~L~~L~L~~n~l~~l-P~~i~~L~~L~~L~l~~~~~l~~--lp~~~i~~L~~L~~L~l~ 276 (2123)
|++++|.++ .+ ..+..+.+|++|++++|.+..+ |..+..+++|++|++++|. +.. +|.. ++.+++|++|+++
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~~l~~L~~L~Ls 183 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-FQENFLPDI-FTELRNLTFLDLS 183 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE-EGGGEECSC-CTTCTTCCEEECT
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc-cccccchhH-HhhCcCCCEEECC
Confidence 999999988 33 5799999999999999998854 5668999999999999998 554 6655 8999999999999
Q ss_pred CcccccccccccccChhhhCCCCCCCEEEEecCCCCCCChhhhccccceeeeccCCccCCCCCcccceeeecccccCccc
Q 000128 277 NSFTEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQVMPQDLLSVELERYRICIGDVWSWSGEHETSRRLKLSALNKCIY 356 (2123)
Q Consensus 277 ~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 356 (2123)
+|.+.. ..+..++.+++|+.|+++.|.+..++...
T Consensus 184 ~n~l~~-------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-------------------------------------- 218 (306)
T 2z66_A 184 QCQLEQ-------LSPTAFNSLSSLQVLNMSHNNFFSLDTFP-------------------------------------- 218 (306)
T ss_dssp TSCCCE-------ECTTTTTTCTTCCEEECTTSCCSBCCSGG--------------------------------------
T ss_pred CCCcCC-------cCHHHhcCCCCCCEEECCCCccCccChhh--------------------------------------
Confidence 998873 23567889999999999998876554321
Q ss_pred cchhHHHhccCCcEEecccccCccccccccCCCCCCC-CccEEEeeccC
Q 000128 357 LGYGMQMLLKGIEDLYLDELNGFQNALLELEDGEVFP-LLKHLHVQNVC 404 (2123)
Q Consensus 357 ~p~~i~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~-~L~~L~L~~~~ 404 (2123)
+ ..+++|+.|+++++.... ..+. .+..++ +|++|++++|.
T Consensus 219 ----~-~~l~~L~~L~L~~N~l~~-~~~~--~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 219 ----Y-KCLNSLQVLDYSLNHIMT-SKKQ--ELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp ----G-TTCTTCCEEECTTSCCCB-CSSS--SCCCCCTTCCEEECTTCC
T ss_pred ----c-cCcccCCEeECCCCCCcc-cCHH--HHHhhhccCCEEEccCCC
Confidence 0 114677788887765432 2222 236664 89999999884
No 63
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.62 E-value=5e-15 Score=178.28 Aligned_cols=181 Identities=21% Similarity=0.210 Sum_probs=159.1
Q ss_pred CCCceEEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcC
Q 000128 127 HKDPTAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLE 206 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~ 206 (2123)
..+++.++++++.+..+|..+ .++++.|++++|.+.+ ++...|..+++|++|++++|.++.+|.. +.+++|++|+++
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls 85 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLS 85 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSE-EEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECC
T ss_pred cCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCc-cCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECC
Confidence 467899999999999998776 4789999999999874 4445568999999999999999988764 899999999999
Q ss_pred CCCCC-CCccccCCCCCcEEEccCCCCccccc-ccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCccccccc
Q 000128 207 SCLLG-DVATIGDLKKLEILSLRHSDVEELPG-EIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEI 284 (2123)
Q Consensus 207 ~~~l~-~p~~i~~L~~L~~L~L~~n~l~~lP~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~ 284 (2123)
+|.++ .|..+..+.+|++|++++|+++.+|. .+..+++|++|++++|. +..+|++.+..+++|++|++++|.+..
T Consensus 86 ~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~-- 162 (290)
T 1p9a_G 86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTE-- 162 (290)
T ss_dssp SSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSC--
T ss_pred CCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCCc--
Confidence 99998 67888999999999999999999874 59999999999999998 888998878999999999999998872
Q ss_pred ccccccChhhhCCCCCCCEEEEecCCCCCCChhh
Q 000128 285 EGQSNASLVELKQLSRLTTLEVHIPDAQVMPQDL 318 (2123)
Q Consensus 285 ~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~ 318 (2123)
.....+.++++|+.|+++.|.+..+|..+
T Consensus 163 -----l~~~~~~~l~~L~~L~L~~N~l~~ip~~~ 191 (290)
T 1p9a_G 163 -----LPAGLLNGLENLDTLLLQENSLYTIPKGF 191 (290)
T ss_dssp -----CCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred -----cCHHHhcCcCCCCEEECCCCcCCccChhh
Confidence 22345688999999999999999888765
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.62 E-value=6.3e-15 Score=189.72 Aligned_cols=221 Identities=17% Similarity=0.211 Sum_probs=181.5
Q ss_pred CCCceEEEccCCCCccCCCC-C-CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCc-ccCCCCCccEE
Q 000128 127 HKDPTAISIPFRGIYEFPER-L-ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPS-SIGCLISLRTL 203 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp~~-~-~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~-~i~~L~~Lr~L 203 (2123)
..+++.|++++|.+..++.. + ++++|++|++++|.+. .++...|.++++|++|++++|.++.+|. .|..+++|++|
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL 141 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEE
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCcee
Confidence 57899999999999977643 3 8999999999999987 4565667999999999999999998876 68999999999
Q ss_pred EcCCCCCC-C-CccccCCCCCcEEEccCC-CCccccc-ccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcc
Q 000128 204 TLESCLLG-D-VATIGDLKKLEILSLRHS-DVEELPG-EIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSF 279 (2123)
Q Consensus 204 ~L~~~~l~-~-p~~i~~L~~L~~L~L~~n-~l~~lP~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~ 279 (2123)
++++|.++ . +..+.++.+|++|++++| .+..+|. .+.++++|++|++++|. +..+|. +..+++|++|++++|.
T Consensus 142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~Ls~N~ 218 (440)
T 3zyj_A 142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN--LTPLIKLDELDLSGNH 218 (440)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC--CTTCSSCCEEECTTSC
T ss_pred eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc--cCCCcccCEEECCCCc
Confidence 99999999 3 468999999999999995 6777776 58999999999999998 888985 8999999999999998
Q ss_pred cccccccccccChhhhCCCCCCCEEEEecCCCCCCChhhhccccceeeeccCCccCCCCCcccceeeecccccCccccch
Q 000128 280 TEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQVMPQDLLSVELERYRICIGDVWSWSGEHETSRRLKLSALNKCIYLGY 359 (2123)
Q Consensus 280 ~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~p~ 359 (2123)
+.. ..+..+.++++|+.|+++.|.+..++...+
T Consensus 219 l~~-------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---------------------------------------- 251 (440)
T 3zyj_A 219 LSA-------IRPGSFQGLMHLQKLWMIQSQIQVIERNAF---------------------------------------- 251 (440)
T ss_dssp CCE-------ECTTTTTTCTTCCEEECTTCCCCEECTTSS----------------------------------------
T ss_pred cCc-------cChhhhccCccCCEEECCCCceeEEChhhh----------------------------------------
Confidence 873 236778999999999999988765533210
Q ss_pred hHHHhccCCcEEecccccCccccccccCCCCCCCCccEEEeeccC
Q 000128 360 GMQMLLKGIEDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNVC 404 (2123)
Q Consensus 360 ~i~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~ 404 (2123)
..+++|+.|+|+++... ...+. .+..+++|+.|++.+|+
T Consensus 252 ---~~l~~L~~L~L~~N~l~-~~~~~--~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 252 ---DNLQSLVEINLAHNNLT-LLPHD--LFTPLHHLERIHLHHNP 290 (440)
T ss_dssp ---TTCTTCCEEECTTSCCC-CCCTT--TTSSCTTCCEEECCSSC
T ss_pred ---cCCCCCCEEECCCCCCC-ccChh--HhccccCCCEEEcCCCC
Confidence 01467778888775433 22222 24788999999999884
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.62 E-value=7.6e-15 Score=189.65 Aligned_cols=221 Identities=20% Similarity=0.188 Sum_probs=180.6
Q ss_pred CCCceEEEccCCCCccCCCC-C-CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcc-cCCCCCccEE
Q 000128 127 HKDPTAISIPFRGIYEFPER-L-ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSS-IGCLISLRTL 203 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp~~-~-~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~-i~~L~~Lr~L 203 (2123)
..++++|++++|.+..++.. + ++++|+.|++++|.+.+ ++...|.++++|++|+|++|.++.+|.. +..+++|++|
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ-IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEE
T ss_pred CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCC-cChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEE
Confidence 57899999999999977543 3 89999999999999874 5555568999999999999999988754 8899999999
Q ss_pred EcCCCCCC-C-CccccCCCCCcEEEccCC-CCccccc-ccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcc
Q 000128 204 TLESCLLG-D-VATIGDLKKLEILSLRHS-DVEELPG-EIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSF 279 (2123)
Q Consensus 204 ~L~~~~l~-~-p~~i~~L~~L~~L~L~~n-~l~~lP~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~ 279 (2123)
++++|.++ . +..+.++.+|++|++++| .+..+|. .+..+++|++|++++|. +..+|. +..+++|++|++++|.
T Consensus 153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~Ls~N~ 229 (452)
T 3zyi_A 153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPN--LTPLVGLEELEMSGNH 229 (452)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCC--CTTCTTCCEEECTTSC
T ss_pred ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-cccccc--ccccccccEEECcCCc
Confidence 99999999 3 368999999999999994 7888876 48999999999999998 888875 8999999999999999
Q ss_pred cccccccccccChhhhCCCCCCCEEEEecCCCCCCChhhhccccceeeeccCCccCCCCCcccceeeecccccCccccch
Q 000128 280 TEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQVMPQDLLSVELERYRICIGDVWSWSGEHETSRRLKLSALNKCIYLGY 359 (2123)
Q Consensus 280 ~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~p~ 359 (2123)
+.+ ..+..+.++++|+.|+++.|.+..++...
T Consensus 230 l~~-------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----------------------------------------- 261 (452)
T 3zyi_A 230 FPE-------IRPGSFHGLSSLKKLWVMNSQVSLIERNA----------------------------------------- 261 (452)
T ss_dssp CSE-------ECGGGGTTCTTCCEEECTTSCCCEECTTT-----------------------------------------
T ss_pred Ccc-------cCcccccCccCCCEEEeCCCcCceECHHH-----------------------------------------
Confidence 873 34678999999999999988876543221
Q ss_pred hHHHhccCCcEEecccccCccccccccCCCCCCCCccEEEeeccC
Q 000128 360 GMQMLLKGIEDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNVC 404 (2123)
Q Consensus 360 ~i~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~ 404 (2123)
+ ..+++|+.|+|+++... ...+. .+..+++|+.|++.+|+
T Consensus 262 -~-~~l~~L~~L~L~~N~l~-~~~~~--~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 262 -F-DGLASLVELNLAHNNLS-SLPHD--LFTPLRYLVELHLHHNP 301 (452)
T ss_dssp -T-TTCTTCCEEECCSSCCS-CCCTT--SSTTCTTCCEEECCSSC
T ss_pred -h-cCCCCCCEEECCCCcCC-ccChH--HhccccCCCEEEccCCC
Confidence 1 11467778888775432 22222 24788999999999883
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.61 E-value=1.2e-14 Score=173.65 Aligned_cols=181 Identities=23% Similarity=0.330 Sum_probs=147.8
Q ss_pred CCceEEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcc-cCCCCCccEEEcC
Q 000128 128 KDPTAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSS-IGCLISLRTLTLE 206 (2123)
Q Consensus 128 ~~l~~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~-i~~L~~Lr~L~L~ 206 (2123)
...+.++++++.+..+|..+ .++++.|++++|.+. .++...|.++++|++|++++|.++.+|.. +..+++|++|+++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCCEEEccCCCCCccCCCC-CCCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 35678899999888888765 367899999999887 45655568899999999999999988765 4789999999999
Q ss_pred CCCCC-CC-ccccCCCCCcEEEccCCCCcccccc-cCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccccc
Q 000128 207 SCLLG-DV-ATIGDLKKLEILSLRHSDVEELPGE-IGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWE 283 (2123)
Q Consensus 207 ~~~l~-~p-~~i~~L~~L~~L~L~~n~l~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~ 283 (2123)
+|.++ .+ ..+..+.+|++|++++|.++.+|.. ++.+++|++|++++|. +..+|...++.+++|++|++++|.+..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~- 171 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKR- 171 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSC-
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcE-
Confidence 99988 43 5678899999999999998887654 7889999999999998 788888778889999999999988762
Q ss_pred cccccccChhhhCCCCCCCEEEEecCCCCCCChhh
Q 000128 284 IEGQSNASLVELKQLSRLTTLEVHIPDAQVMPQDL 318 (2123)
Q Consensus 284 ~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~ 318 (2123)
..+..+.++++|+.|+++.|.+..++...
T Consensus 172 ------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 200 (270)
T 2o6q_A 172 ------VPEGAFDKLTELKTLKLDNNQLKRVPEGA 200 (270)
T ss_dssp ------CCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred ------eChhHhccCCCcCEEECCCCcCCcCCHHH
Confidence 22445788899999999999888776643
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.60 E-value=4.8e-16 Score=190.00 Aligned_cols=180 Identities=16% Similarity=0.161 Sum_probs=114.2
Q ss_pred CceEEEccCCCCccCCCCCCCCCceEEEeecCcC-CCccchhHh------hCCCCccEEEeecCCCC-CCCccc--CCCC
Q 000128 129 DPTAISIPFRGIYEFPERLECPKLKLFVLFSENL-SLRIPDLFF------EGMTELRVLSFTGFRFP-SLPSSI--GCLI 198 (2123)
Q Consensus 129 ~l~~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~-~~~~p~~~~------~~l~~Lr~L~L~~n~i~-~lp~~i--~~L~ 198 (2123)
+++.+++.+|.+ .+|..+. ..|+.|++++|.+ ...+|..++ .++++|++|++++|.++ .+|..+ +.++
T Consensus 44 ~L~~l~l~~n~l-~~p~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 121 (312)
T 1wwl_A 44 SLEYLLKRVDTE-ADLGQFT-DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP 121 (312)
T ss_dssp ECTTHHHHCCTT-CCCHHHH-HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSC
T ss_pred CceeEeeccccc-ccHHHHH-HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCC
Confidence 456666777776 5555431 1267777777766 234554431 15777777777777776 566665 7777
Q ss_pred CccEEEcCCCCCC-CCccccCC-----CCCcEEEccCCCCcccc-cccCCCCCccEEeccCCCCCcc--cChh-hhCCCC
Q 000128 199 SLRTLTLESCLLG-DVATIGDL-----KKLEILSLRHSDVEELP-GEIGQLTRLKLLDLSNCMKLKV--IRPN-VISSLS 268 (2123)
Q Consensus 199 ~Lr~L~L~~~~l~-~p~~i~~L-----~~L~~L~L~~n~l~~lP-~~i~~L~~L~~L~l~~~~~l~~--lp~~-~i~~L~ 268 (2123)
+|++|++++|.++ .|..++.+ .+|++|++++|++..+| ..++++++|++|++++|+..+. +|.. .+++++
T Consensus 122 ~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~ 201 (312)
T 1wwl_A 122 DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFP 201 (312)
T ss_dssp CCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCT
T ss_pred CccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCC
Confidence 7777777777776 55556555 77777887777777665 5677777778887777773332 2333 126777
Q ss_pred CCCEEEccCcccccccccccccChhhhCCCCCCCEEEEecCCCCCC
Q 000128 269 RLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQVM 314 (2123)
Q Consensus 269 ~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 314 (2123)
+|++|++++|.+.... ......+.++++|+.|+++.|.+...
T Consensus 202 ~L~~L~L~~N~l~~~~----~~~~~~~~~l~~L~~L~Ls~N~l~~~ 243 (312)
T 1wwl_A 202 TLQVLALRNAGMETPS----GVCSALAAARVQLQGLDLSHNSLRDA 243 (312)
T ss_dssp TCCEEECTTSCCCCHH----HHHHHHHHTTCCCSEEECTTSCCCSS
T ss_pred CCCEEECCCCcCcchH----HHHHHHHhcCCCCCEEECCCCcCCcc
Confidence 7778877777765110 00112235667777777777776654
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.59 E-value=2.8e-16 Score=192.58 Aligned_cols=243 Identities=15% Similarity=0.116 Sum_probs=150.4
Q ss_pred CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcCCCCCCCCccccCCCCCcEEEc
Q 000128 148 ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLGDVATIGDLKKLEILSL 227 (2123)
Q Consensus 148 ~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~~l~~p~~i~~L~~L~~L~L 227 (2123)
.+++|++|++++|.+.+ ++...|..+++|++|++++|.++.+++ +..+++|++|++++|.++.. ....+|++|++
T Consensus 32 ~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l---~~~~~L~~L~l 106 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL---LVGPSIETLHA 106 (317)
T ss_dssp TGGGCSEEECTTSCCCC-CCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEE---EECTTCCEEEC
T ss_pred cCCCCCEEECcCCccCc-CCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccc---cCCCCcCEEEC
Confidence 45677777777777764 443445777777777777777776554 77777777777777776622 12367777777
Q ss_pred cCCCCcccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccccccccccccChhhh-CCCCCCCEEEE
Q 000128 228 RHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVEL-KQLSRLTTLEV 306 (2123)
Q Consensus 228 ~~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l-~~L~~L~~L~l 306 (2123)
++|+++.+|.. .+++|++|++++|. +..+++..++.+++|++|++++|.+... .+..+ ..+++|+.|++
T Consensus 107 ~~n~l~~~~~~--~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-------~~~~~~~~l~~L~~L~L 176 (317)
T 3o53_A 107 ANNNISRVSCS--RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTV-------NFAELAASSDTLEHLNL 176 (317)
T ss_dssp CSSCCSEEEEC--CCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCCEE-------EGGGGGGGTTTCCEEEC
T ss_pred CCCccCCcCcc--ccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCCcc-------cHHHHhhccCcCCEEEC
Confidence 77777766543 36677777777777 6666554467777777777777776622 13333 35677777777
Q ss_pred ecCCCCCCChhhhccccceeeeccCCccCCCCCcccceeeecccccCccccchhHHHhccCCcEEecccccCcccccccc
Q 000128 307 HIPDAQVMPQDLLSVELERYRICIGDVWSWSGEHETSRRLKLSALNKCIYLGYGMQMLLKGIEDLYLDELNGFQNALLEL 386 (2123)
Q Consensus 307 ~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~p~~i~~~l~~L~~L~L~~~~~~~~~~~~l 386 (2123)
+.|.+..++.... +++|+.|+++++. ...+|..+. .+++|+.|+++++... . +|.
T Consensus 177 ~~N~l~~~~~~~~--------------------l~~L~~L~Ls~N~-l~~l~~~~~-~l~~L~~L~L~~N~l~-~-l~~- 231 (317)
T 3o53_A 177 QYNFIYDVKGQVV--------------------FAKLKTLDLSSNK-LAFMGPEFQ-SAAGVTWISLRNNKLV-L-IEK- 231 (317)
T ss_dssp TTSCCCEEECCCC--------------------CTTCCEEECCSSC-CCEECGGGG-GGTTCSEEECTTSCCC-E-ECT-
T ss_pred CCCcCcccccccc--------------------cccCCEEECCCCc-CCcchhhhc-ccCcccEEECcCCccc-c-hhh-
Confidence 7777655432222 2344455554222 223344433 3678888888886443 3 232
Q ss_pred CCCCCCCCccEEEeeccCCc-cEeeccccccCCCcCcccceeeccccccch
Q 000128 387 EDGEVFPLLKHLHVQNVCEI-LYIVNLVGWEHCNAFPLLESLFLHNLMRLE 436 (2123)
Q Consensus 387 ~~~~~l~~L~~L~L~~~~~~-~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~ 436 (2123)
.+..+++|+.|++.+|... ..++. ....+++|+.+.+.++..++
T Consensus 232 -~~~~l~~L~~L~l~~N~~~~~~~~~-----~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 232 -ALRFSQNLEHFDLRGNGFHCGTLRD-----FFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp -TCCCCTTCCEEECTTCCCBHHHHHH-----HHHTCHHHHHHHHHHHHHHH
T ss_pred -HhhcCCCCCEEEccCCCccCcCHHH-----HHhccccceEEECCCchhcc
Confidence 2477888899998887543 12221 12346677777776554444
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.59 E-value=1.9e-14 Score=171.94 Aligned_cols=177 Identities=24% Similarity=0.346 Sum_probs=155.9
Q ss_pred CCCceEEEccCCCCccCCCC-C-CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCc-ccCCCCCccEE
Q 000128 127 HKDPTAISIPFRGIYEFPER-L-ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPS-SIGCLISLRTL 203 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp~~-~-~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~-~i~~L~~Lr~L 203 (2123)
+.++++|++++|.+..++.. + ++++|++|++++|.+. .+|..+|..+++|++|++++|.++.+|. .+..+++|++|
T Consensus 36 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 114 (270)
T 2o6q_A 36 PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAEL 114 (270)
T ss_dssp CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEE
T ss_pred CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEE
Confidence 46899999999999988763 3 8999999999999987 6788888999999999999999998875 56899999999
Q ss_pred EcCCCCCC-C-CccccCCCCCcEEEccCCCCcccccc-cCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCccc
Q 000128 204 TLESCLLG-D-VATIGDLKKLEILSLRHSDVEELPGE-IGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFT 280 (2123)
Q Consensus 204 ~L~~~~l~-~-p~~i~~L~~L~~L~L~~n~l~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~ 280 (2123)
++++|.++ . +..++.+++|++|++++|+++.+|.. ++.+++|++|++++|. +..+|+..+.++++|++|++++|.+
T Consensus 115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l 193 (270)
T 2o6q_A 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQL 193 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCCcC
Confidence 99999998 3 46689999999999999999999876 7899999999999998 8888887789999999999999988
Q ss_pred ccccccccccChhhhCCCCCCCEEEEecCCCC
Q 000128 281 EWEIEGQSNASLVELKQLSRLTTLEVHIPDAQ 312 (2123)
Q Consensus 281 ~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 312 (2123)
.. .....+..+++|+.|+++.|.+.
T Consensus 194 ~~-------~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 194 KR-------VPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp SC-------CCTTTTTTCTTCCEEECCSSCBC
T ss_pred Cc-------CCHHHhccccCCCEEEecCCCee
Confidence 72 22445788999999999988754
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.57 E-value=1.8e-14 Score=172.96 Aligned_cols=176 Identities=20% Similarity=0.283 Sum_probs=129.9
Q ss_pred EEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCc-ccCCCCCccEEEcCCCCC
Q 000128 132 AISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPS-SIGCLISLRTLTLESCLL 210 (2123)
Q Consensus 132 ~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~-~i~~L~~Lr~L~L~~~~l 210 (2123)
.++..+..+..+|..+ .+++++|++++|.+. .++...|.++++|++|++++|.++.++. .+..+++|++|++++|.+
T Consensus 11 ~~~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDNL-PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EEECTTSCCSSCCSSS-CTTCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEEecCCCccccCCCC-CCCccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 3455555666777655 357888999888877 4554456888899999999998887654 688889999999999988
Q ss_pred C--CCccccCCCCCcEEEccCCCCccccc-ccCCCCCccEEeccCCCCCcc--cChhhhCCCCCCCEEEccCcccccccc
Q 000128 211 G--DVATIGDLKKLEILSLRHSDVEELPG-EIGQLTRLKLLDLSNCMKLKV--IRPNVISSLSRLEELYMGNSFTEWEIE 285 (2123)
Q Consensus 211 ~--~p~~i~~L~~L~~L~L~~n~l~~lP~-~i~~L~~L~~L~l~~~~~l~~--lp~~~i~~L~~L~~L~l~~n~~~~~~~ 285 (2123)
+ .+..+.++.+|++|++++|++..++. .++++++|++|++++|. +.. +|.. ++++++|++|++++|.+....
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~- 165 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY- 165 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCEEC-
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchh-hccCCCCCEEECCCCCCCcCC-
Confidence 8 34678888999999999998887765 58888999999998888 555 4655 888899999999888876321
Q ss_pred cccccChhhhCCCCCCC-EEEEecCCCCCCC
Q 000128 286 GQSNASLVELKQLSRLT-TLEVHIPDAQVMP 315 (2123)
Q Consensus 286 ~~~~~~~~~l~~L~~L~-~L~l~~~~~~~~~ 315 (2123)
......+.+++.|. .|+++.|.+..++
T Consensus 166 ---~~~~~~l~~L~~l~l~L~ls~n~l~~~~ 193 (276)
T 2z62_A 166 ---CTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193 (276)
T ss_dssp ---GGGGHHHHTCTTCCEEEECCSSCCCEEC
T ss_pred ---HHHhhhhhhccccceeeecCCCcccccC
Confidence 11233444444444 7788777766543
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.57 E-value=7.6e-16 Score=188.22 Aligned_cols=247 Identities=16% Similarity=0.123 Sum_probs=179.3
Q ss_pred CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCC--CCCcccC-------CCCCccEEEcCCCCCC--CCccc
Q 000128 148 ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFP--SLPSSIG-------CLISLRTLTLESCLLG--DVATI 216 (2123)
Q Consensus 148 ~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~--~lp~~i~-------~L~~Lr~L~L~~~~l~--~p~~i 216 (2123)
..++|+.|++++|.+ .+|..+... |++|++++|.++ .+|..+. ++++|++|++++|.++ .|..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 456788888889888 688877443 899999999886 4676665 7999999999999987 56665
Q ss_pred --cCCCCCcEEEccCCCCcccccccCCC-----CCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccccccccccc
Q 000128 217 --GDLKKLEILSLRHSDVEELPGEIGQL-----TRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSN 289 (2123)
Q Consensus 217 --~~L~~L~~L~L~~n~l~~lP~~i~~L-----~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~~~~ 289 (2123)
+.+++|++|++++|+++.+|..++.+ ++|++|++++|. +..+++..++++++|++|++++|.+.+..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----- 189 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGER----- 189 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHH-----
T ss_pred HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcch-----
Confidence 89999999999999999888888877 999999999999 77888666999999999999999876321
Q ss_pred cChhhh--CCCCCCCEEEEecCCCCCCChhhhccccceeeeccCCccCCCCCcccceeeecccccCccccchhHHHhccC
Q 000128 290 ASLVEL--KQLSRLTTLEVHIPDAQVMPQDLLSVELERYRICIGDVWSWSGEHETSRRLKLSALNKCIYLGYGMQMLLKG 367 (2123)
Q Consensus 290 ~~~~~l--~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~p~~i~~~l~~ 367 (2123)
..+..+ +++++|++|+++.|.+..++. ++.++...+++
T Consensus 190 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----------------------------------------~~~~~~~~l~~ 229 (312)
T 1wwl_A 190 GLISALCPLKFPTLQVLALRNAGMETPSG----------------------------------------VCSALAAARVQ 229 (312)
T ss_dssp HHHHHSCTTSCTTCCEEECTTSCCCCHHH----------------------------------------HHHHHHHTTCC
T ss_pred HHHHHHHhccCCCCCEEECCCCcCcchHH----------------------------------------HHHHHHhcCCC
Confidence 113344 788999999999887664321 12223333578
Q ss_pred CcEEecccccCccccccccCCCCCCCCccEEEeeccCCccEeeccccccCCCcCcccceeeccccccchhhhcCCCCccc
Q 000128 368 IEDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLFLHNLMRLEMVYRGQLTEHS 447 (2123)
Q Consensus 368 L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~ 447 (2123)
|+.|+++++... ...+ .+.+..+++|++|++++|. +..++. ..
T Consensus 230 L~~L~Ls~N~l~-~~~~-~~~~~~l~~L~~L~Ls~N~-l~~ip~----------------------------------~~ 272 (312)
T 1wwl_A 230 LQGLDLSHNSLR-DAAG-APSCDWPSQLNSLNLSFTG-LKQVPK----------------------------------GL 272 (312)
T ss_dssp CSEEECTTSCCC-SSCC-CSCCCCCTTCCEEECTTSC-CSSCCS----------------------------------SC
T ss_pred CCEEECCCCcCC-cccc-hhhhhhcCCCCEEECCCCc-cChhhh----------------------------------hc
Confidence 888888886543 2221 1123567888888888873 111111 11
Q ss_pred CCCccEEEEecCCCCCCCCChhhhhhcCCCcEEEecccc
Q 000128 448 FSKLRIIKVCQCDNLKHLFSFPMARNLLQLQKLKVSFCE 486 (2123)
Q Consensus 448 ~~~L~~L~l~~c~~L~~lp~~~~~~~L~~L~~L~l~~c~ 486 (2123)
+++|++|++++ ++++.+|. +..+++|++|++++++
T Consensus 273 ~~~L~~L~Ls~-N~l~~~p~---~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 273 PAKLSVLDLSY-NRLDRNPS---PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CSEEEEEECCS-SCCCSCCC---TTTSCEEEEEECTTCT
T ss_pred cCCceEEECCC-CCCCCChh---HhhCCCCCEEeccCCC
Confidence 25677777776 36666654 5677788888887754
No 72
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.56 E-value=3.4e-14 Score=172.88 Aligned_cols=185 Identities=19% Similarity=0.258 Sum_probs=155.8
Q ss_pred CCCceEEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcC
Q 000128 127 HKDPTAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLE 206 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~ 206 (2123)
++++++|++.++.+..++....+++|++|++++|.+. .++. +..+++|++|++++|.++.+| .+..+++|++|+++
T Consensus 40 l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECT
T ss_pred cCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECC
Confidence 5689999999999998886558999999999999887 4555 589999999999999999886 68999999999999
Q ss_pred CCCCCCCccccCCCCCcEEEccCCCCcccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCccccccccc
Q 000128 207 SCLLGDVATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEG 286 (2123)
Q Consensus 207 ~~~l~~p~~i~~L~~L~~L~L~~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~ 286 (2123)
+|.++.++.+..+++|++|++++|.++.+|. ++.+++|++|++++|. +..+++ ++++++|++|++++|.+..
T Consensus 116 ~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~---- 187 (308)
T 1h6u_A 116 STQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDLTP--LANLSKLTTLKADDNKISD---- 187 (308)
T ss_dssp TSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCC----
T ss_pred CCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-CCCChh--hcCCCCCCEEECCCCccCc----
Confidence 9999966669999999999999999998876 8899999999999998 777876 8999999999999998872
Q ss_pred ccccChhhhCCCCCCCEEEEecCCCCCCChhhhccccceeee
Q 000128 287 QSNASLVELKQLSRLTTLEVHIPDAQVMPQDLLSVELERYRI 328 (2123)
Q Consensus 287 ~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i 328 (2123)
...+..+++|+.|+++.|.+..++.-....+|+.+.+
T Consensus 188 -----~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l 224 (308)
T 1h6u_A 188 -----ISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTL 224 (308)
T ss_dssp -----CGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEE
T ss_pred -----ChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEc
Confidence 2237889999999999999887764323344444443
No 73
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.56 E-value=3.4e-14 Score=167.59 Aligned_cols=176 Identities=21% Similarity=0.279 Sum_probs=152.1
Q ss_pred CceEEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCC-cccCCCCCccEEEcCC
Q 000128 129 DPTAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLP-SSIGCLISLRTLTLES 207 (2123)
Q Consensus 129 ~l~~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp-~~i~~L~~Lr~L~L~~ 207 (2123)
..++++++++.+..+|..+. ++++.|++++|.+.+ ++...|.++++|++|++++|.++.++ ..+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLAT-LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCc-cCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 46789999999999998764 789999999999885 44445689999999999999999775 4589999999999999
Q ss_pred CCCC-CC-ccccCCCCCcEEEccCCCCcccccc-cCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCccccccc
Q 000128 208 CLLG-DV-ATIGDLKKLEILSLRHSDVEELPGE-IGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEI 284 (2123)
Q Consensus 208 ~~l~-~p-~~i~~L~~L~~L~L~~n~l~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~ 284 (2123)
|.++ .+ ..+..+.+|++|++++|+++.+|.. +..+++|++|++++|. +..+|++.++.+++|++|++++|.+..
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~-- 169 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQS-- 169 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSC--
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCc--
Confidence 9998 44 6789999999999999999999876 6899999999999998 888988779999999999999998872
Q ss_pred ccccccChhhhCCCCCCCEEEEecCCCCCC
Q 000128 285 EGQSNASLVELKQLSRLTTLEVHIPDAQVM 314 (2123)
Q Consensus 285 ~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 314 (2123)
..+..+..+++|+.|+++.|.+...
T Consensus 170 -----~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 170 -----VPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp -----CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred -----cCHHHHhCCCCCCEEEeeCCceeCC
Confidence 2345688899999999999987543
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.56 E-value=3.4e-14 Score=169.80 Aligned_cols=175 Identities=23% Similarity=0.266 Sum_probs=149.1
Q ss_pred CCCceEEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcc-cCCCCCccEEEc
Q 000128 127 HKDPTAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSS-IGCLISLRTLTL 205 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~-i~~L~~Lr~L~L 205 (2123)
+.+++.|++.++.+..++....+++|++|++++|.+.+ ++ .+..+++|++|++++|.++.+|.. ++.+++|++|++
T Consensus 40 l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD-IS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp HTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC-CG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC-ch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 56899999999999888776689999999999998874 44 358999999999999999987654 689999999999
Q ss_pred CCCCCC-CC-ccccCCCCCcEEEccCCCCcccccc-cCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCccccc
Q 000128 206 ESCLLG-DV-ATIGDLKKLEILSLRHSDVEELPGE-IGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEW 282 (2123)
Q Consensus 206 ~~~~l~-~p-~~i~~L~~L~~L~L~~n~l~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~ 282 (2123)
++|.++ .+ ..++.+.+|++|++++|+++.+|.. ++++++|++|++++|. +..+|+..++.+++|++|++++|.+.+
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCCc
Confidence 999998 44 5589999999999999999988765 6899999999999998 778888767899999999999998873
Q ss_pred ccccccccChhhhCCCCCCCEEEEecCCCC
Q 000128 283 EIEGQSNASLVELKQLSRLTTLEVHIPDAQ 312 (2123)
Q Consensus 283 ~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 312 (2123)
..+..++.+++|+.|+++.|.+.
T Consensus 196 -------~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 196 -------VPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp -------CCTTTTTTCTTCCEEECCSSCBC
T ss_pred -------cCHHHHhCCcCCCEEEccCCCcc
Confidence 22455788999999999988654
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.55 E-value=3.9e-14 Score=170.43 Aligned_cols=158 Identities=20% Similarity=0.218 Sum_probs=134.4
Q ss_pred CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCC-CcccCCCCCccEEEcCCCCCCCCccccCCCCCcEEE
Q 000128 148 ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSL-PSSIGCLISLRTLTLESCLLGDVATIGDLKKLEILS 226 (2123)
Q Consensus 148 ~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~l-p~~i~~L~~Lr~L~L~~~~l~~p~~i~~L~~L~~L~ 226 (2123)
+++++++++++++.+. .+|..+ .+.+++|++++|.++.+ |..+..+++|++|++++|.++.++..+.+.+|++|+
T Consensus 8 ~l~~l~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 83 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLD 83 (290)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEE
T ss_pred ccCCccEEECCCCCCC-cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEE
Confidence 5778999999998887 678765 36899999999999976 467999999999999999998444448899999999
Q ss_pred ccCCCCcccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccccccccccccChhhhCCCCCCCEEEE
Q 000128 227 LRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEV 306 (2123)
Q Consensus 227 L~~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l 306 (2123)
+++|+++.+|..+..+++|++|++++|+ +..+|++.++++++|++|++++|.+.. .....+..+++|+.|++
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~-------~~~~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKT-------LPPGLLTPTPKLEKLSL 155 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCC-------CCTTTTTTCTTCCEEEC
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCc-------cChhhcccccCCCEEEC
Confidence 9999999999999999999999999998 888887779999999999999998872 22455778899999999
Q ss_pred ecCCCCCCChh
Q 000128 307 HIPDAQVMPQD 317 (2123)
Q Consensus 307 ~~~~~~~~~~~ 317 (2123)
+.|.+..+|..
T Consensus 156 ~~N~l~~l~~~ 166 (290)
T 1p9a_G 156 ANNNLTELPAG 166 (290)
T ss_dssp TTSCCSCCCTT
T ss_pred CCCcCCccCHH
Confidence 99988776554
No 76
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.55 E-value=1.3e-16 Score=207.57 Aligned_cols=181 Identities=17% Similarity=0.175 Sum_probs=106.7
Q ss_pred CCceEEEccCCCCccCCCC--C-CCCCceEEEeecCcCCCc----cchhHhhCCCCccEEEeecCCCCCC-Cccc-CCCC
Q 000128 128 KDPTAISIPFRGIYEFPER--L-ECPKLKLFVLFSENLSLR----IPDLFFEGMTELRVLSFTGFRFPSL-PSSI-GCLI 198 (2123)
Q Consensus 128 ~~l~~L~l~~n~~~~lp~~--~-~~~~Lr~L~l~~n~~~~~----~p~~~~~~l~~Lr~L~L~~n~i~~l-p~~i-~~L~ 198 (2123)
+++++|+++++.+...+.. + .+++|++|++++|.+... ++. .+..+++|++|++++|.+... +..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS-ALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHH-HHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHH-HHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 4567777777776632211 1 567777788877776532 232 346677788888877776531 2122 2233
Q ss_pred ----CccEEEcCCCCCCC------CccccCCCCCcEEEccCCCCccc-cc----c-cCCCCCccEEeccCCCCCcc----
Q 000128 199 ----SLRTLTLESCLLGD------VATIGDLKKLEILSLRHSDVEEL-PG----E-IGQLTRLKLLDLSNCMKLKV---- 258 (2123)
Q Consensus 199 ----~Lr~L~L~~~~l~~------p~~i~~L~~L~~L~L~~n~l~~l-P~----~-i~~L~~L~~L~l~~~~~l~~---- 258 (2123)
+|++|++++|.++. +..+..+++|++|++++|.+... +. . ....++|++|++++|. +..
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~ 160 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCE 160 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHH
Confidence 57788887777662 46677777788888877776522 11 2 2235567778877776 443
Q ss_pred -cChhhhCCCCCCCEEEccCcccccccccccccChhhhC-CCCCCCEEEEecCCCCCC
Q 000128 259 -IRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELK-QLSRLTTLEVHIPDAQVM 314 (2123)
Q Consensus 259 -lp~~~i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~-~L~~L~~L~l~~~~~~~~ 314 (2123)
++.. +..+++|++|++++|.+.... .......+. ..++|+.|+++.|.+...
T Consensus 161 ~l~~~-l~~~~~L~~L~L~~n~i~~~~---~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 214 (461)
T 1z7x_W 161 PLASV-LRAKPDFKELTVSNNDINEAG---VRVLCQGLKDSPCQLEALKLESCGVTSD 214 (461)
T ss_dssp HHHHH-HHHCTTCCEEECCSSBCHHHH---HHHHHHHHHHSCCCCCEEECTTSCCBTT
T ss_pred HHHHH-HhhCCCCCEEECcCCCcchHH---HHHHHHHHhcCCCCceEEEccCCCCcHH
Confidence 2332 566677788887777665211 000111111 355777777777766553
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.55 E-value=4.3e-14 Score=171.93 Aligned_cols=189 Identities=20% Similarity=0.252 Sum_probs=153.5
Q ss_pred CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcCCCCCCCCccccCCCCCcEEEc
Q 000128 148 ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLGDVATIGDLKKLEILSL 227 (2123)
Q Consensus 148 ~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~~l~~p~~i~~L~~L~~L~L 227 (2123)
++++|++|++++|.+. .++. +..+++|++|++++|.++.+|. +..+++|++|++++|.++.++.+..+.+|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l 114 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDL 114 (308)
T ss_dssp HHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEEC
T ss_pred HcCCcCEEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEEC
Confidence 5788999999998876 4553 5789999999999999998887 9999999999999999987778999999999999
Q ss_pred cCCCCcccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccccccccccccChhhhCCCCCCCEEEEe
Q 000128 228 RHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEVH 307 (2123)
Q Consensus 228 ~~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 307 (2123)
++|+++.+|. +..+++|++|++++|. +..+++ ++.+++|++|++++|.+.. ...++.+++|+.|+++
T Consensus 115 ~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~---------~~~l~~l~~L~~L~l~ 181 (308)
T 1h6u_A 115 TSTQITDVTP-LAGLSNLQVLYLDLNQ-ITNISP--LAGLTNLQYLSIGNAQVSD---------LTPLANLSKLTTLKAD 181 (308)
T ss_dssp TTSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECCSSCCCC---------CGGGTTCTTCCEEECC
T ss_pred CCCCCCCchh-hcCCCCCCEEECCCCc-cCcCcc--ccCCCCccEEEccCCcCCC---------ChhhcCCCCCCEEECC
Confidence 9999998875 8999999999999998 777776 7899999999999998762 2238889999999999
Q ss_pred cCCCCCCChhhhccccceeeeccCCccCCCCCcccceeeecccccCccccchhHHHhccCCcEEecccccCccccccccC
Q 000128 308 IPDAQVMPQDLLSVELERYRICIGDVWSWSGEHETSRRLKLSALNKCIYLGYGMQMLLKGIEDLYLDELNGFQNALLELE 387 (2123)
Q Consensus 308 ~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~p~~i~~~l~~L~~L~L~~~~~~~~~~~~l~ 387 (2123)
.|.+..++.. ..+++|+.|+++++... + .+.
T Consensus 182 ~n~l~~~~~l---------------------------------------------~~l~~L~~L~L~~N~l~-~-~~~-- 212 (308)
T 1h6u_A 182 DNKISDISPL---------------------------------------------ASLPNLIEVHLKNNQIS-D-VSP-- 212 (308)
T ss_dssp SSCCCCCGGG---------------------------------------------GGCTTCCEEECTTSCCC-B-CGG--
T ss_pred CCccCcChhh---------------------------------------------cCCCCCCEEEccCCccC-c-ccc--
Confidence 8877654320 12567788888775442 2 222
Q ss_pred CCCCCCCccEEEeecc
Q 000128 388 DGEVFPLLKHLHVQNV 403 (2123)
Q Consensus 388 ~~~~l~~L~~L~L~~~ 403 (2123)
+..+++|+.|++.+|
T Consensus 213 -l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 213 -LANTSNLFIVTLTNQ 227 (308)
T ss_dssp -GTTCTTCCEEEEEEE
T ss_pred -ccCCCCCCEEEccCC
Confidence 378899999999887
No 78
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.55 E-value=1.7e-13 Score=180.67 Aligned_cols=171 Identities=20% Similarity=0.118 Sum_probs=140.7
Q ss_pred CCCceEEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcC
Q 000128 127 HKDPTAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLE 206 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~ 206 (2123)
.++++.|++++|.+..+|. .+++|++|++++|.+. .+|. .+++|++|++++|.++.+|. .+.+|++|+++
T Consensus 60 ~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~ 129 (622)
T 3g06_A 60 PAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIF 129 (622)
T ss_dssp CTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCS-CCCC----CCTTCCEEEECSCCCCCCCC---CCTTCCEEECC
T ss_pred CCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEECcCCcCCCCCC---CCCCcCEEECC
Confidence 4689999999999999987 6899999999999987 5775 68999999999999999987 67899999999
Q ss_pred CCCCC-CCccccCCCCCcEEEccCCCCcccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccccccc
Q 000128 207 SCLLG-DVATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIE 285 (2123)
Q Consensus 207 ~~~l~-~p~~i~~L~~L~~L~L~~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~ 285 (2123)
+|.++ .|.. +++|++|++++|+++.+|.. +.+|+.|++++|. +..+| ..+++|++|++++|.+.+
T Consensus 130 ~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~-l~~l~----~~~~~L~~L~Ls~N~l~~--- 195 (622)
T 3g06_A 130 GNQLTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQ-LTSLP----MLPSGLQELSVSDNQLAS--- 195 (622)
T ss_dssp SSCCSCCCCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCC----CCCTTCCEEECCSSCCSC---
T ss_pred CCCCCcCCCC---CCCCCEEECcCCcCCCcCCc---cCCCCEEECCCCC-CCCCc----ccCCCCcEEECCCCCCCC---
Confidence 99998 4543 48999999999999999864 4689999999998 88888 347899999999998872
Q ss_pred cccccChhhhCCCCCCCEEEEecCCCCCCChhhhccccceeeeccC
Q 000128 286 GQSNASLVELKQLSRLTTLEVHIPDAQVMPQDLLSVELERYRICIG 331 (2123)
Q Consensus 286 ~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~ 331 (2123)
.+. .+++|+.|+++.|.+..+|.. ..+|+.+.+..+
T Consensus 196 -----l~~---~~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N 231 (622)
T 3g06_A 196 -----LPT---LPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGN 231 (622)
T ss_dssp -----CCC---CCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSS
T ss_pred -----CCC---ccchhhEEECcCCcccccCCC--CCCCCEEEccCC
Confidence 111 247899999999998877643 245555555433
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.55 E-value=2.1e-14 Score=168.07 Aligned_cols=190 Identities=12% Similarity=0.169 Sum_probs=154.8
Q ss_pred CCCceEEEccCCCCccCCCC-C-CCCCceEEEeecCc-CCCccchhHhhCCCCccEEEeec-CCCCCCC-cccCCCCCcc
Q 000128 127 HKDPTAISIPFRGIYEFPER-L-ECPKLKLFVLFSEN-LSLRIPDLFFEGMTELRVLSFTG-FRFPSLP-SSIGCLISLR 201 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp~~-~-~~~~Lr~L~l~~n~-~~~~~p~~~~~~l~~Lr~L~L~~-n~i~~lp-~~i~~L~~Lr 201 (2123)
..++++|++++|.+..++.. + ++++|++|++++|. +. .++...|.++++|++|++++ |.++.+| ..+..+++|+
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 46899999999999988763 3 78999999999997 55 67766678999999999998 9999886 4688999999
Q ss_pred EEEcCCCCCCCCccccCCCCCc---EEEccCC-CCcccccc-cCCCCCcc-EEeccCCCCCcccChhhhCCCCCCCEEEc
Q 000128 202 TLTLESCLLGDVATIGDLKKLE---ILSLRHS-DVEELPGE-IGQLTRLK-LLDLSNCMKLKVIRPNVISSLSRLEELYM 275 (2123)
Q Consensus 202 ~L~L~~~~l~~p~~i~~L~~L~---~L~L~~n-~l~~lP~~-i~~L~~L~-~L~l~~~~~l~~lp~~~i~~L~~L~~L~l 275 (2123)
+|++++|.++..+.++.+.+|+ +|++++| +++.+|.. +..+++|+ +|++++|. +..+|...+.. ++|++|++
T Consensus 109 ~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 109 FLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTT-CEEEEEEC
T ss_pred EEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCC-CCCCEEEc
Confidence 9999999988444488888888 9999999 99988765 88999999 99999998 77899875555 89999999
Q ss_pred cCcc-cccccccccccChhhhCCC-CCCCEEEEecCCCCCCChhhhccccceee
Q 000128 276 GNSF-TEWEIEGQSNASLVELKQL-SRLTTLEVHIPDAQVMPQDLLSVELERYR 327 (2123)
Q Consensus 276 ~~n~-~~~~~~~~~~~~~~~l~~L-~~L~~L~l~~~~~~~~~~~~~~~~L~~l~ 327 (2123)
++|. +.. .....++++ ++|+.|+++.|.+..+|.. .+.+|+.+.
T Consensus 187 ~~n~~l~~-------i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~ 232 (239)
T 2xwt_C 187 NKNKYLTV-------IDKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELI 232 (239)
T ss_dssp TTCTTCCE-------ECTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEE
T ss_pred CCCCCccc-------CCHHHhhccccCCcEEECCCCccccCChh-HhccCceee
Confidence 9994 762 224567788 8999999999999888765 344454444
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.54 E-value=2.7e-14 Score=171.36 Aligned_cols=182 Identities=22% Similarity=0.292 Sum_probs=153.3
Q ss_pred CCCceEEEccCCCCccCCC-CC-CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCC-cccCCCCCccEE
Q 000128 127 HKDPTAISIPFRGIYEFPE-RL-ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLP-SSIGCLISLRTL 203 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp~-~~-~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp-~~i~~L~~Lr~L 203 (2123)
..++++|++++|.+..++. .+ ++++|++|++++|.+. .++...|..+++|++|++++|.++.++ ..+.++++|++|
T Consensus 27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 4679999999999997775 33 8999999999999887 556555689999999999999999775 679999999999
Q ss_pred EcCCCCCC-CC-ccccCCCCCcEEEccCCCCcc--cccccCCCCCccEEeccCCCCCcccChhhhCCCCCCC----EEEc
Q 000128 204 TLESCLLG-DV-ATIGDLKKLEILSLRHSDVEE--LPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLE----ELYM 275 (2123)
Q Consensus 204 ~L~~~~l~-~p-~~i~~L~~L~~L~L~~n~l~~--lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~----~L~l 275 (2123)
++++|.+. .+ ..++.+++|++|++++|.+.. +|..++++++|++|++++|. +..++...+..+++|+ +|++
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDL 184 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCEEEEC
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhccccceeeec
Confidence 99999998 33 479999999999999999986 78999999999999999998 7888766577777776 8999
Q ss_pred cCcccccccccccccChhhhCCCCCCCEEEEecCCCCCCChhh
Q 000128 276 GNSFTEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQVMPQDL 318 (2123)
Q Consensus 276 ~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~ 318 (2123)
++|.+.+. +.......+|+.|+++.|.+..++..+
T Consensus 185 s~n~l~~~--------~~~~~~~~~L~~L~L~~n~l~~~~~~~ 219 (276)
T 2z62_A 185 SLNPMNFI--------QPGAFKEIRLKELALDTNQLKSVPDGI 219 (276)
T ss_dssp CSSCCCEE--------CTTSSCSCCEEEEECCSSCCSCCCTTT
T ss_pred CCCccccc--------CccccCCCcccEEECCCCceeecCHhH
Confidence 99988732 222333448999999999998887654
No 81
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.52 E-value=6e-15 Score=180.72 Aligned_cols=234 Identities=16% Similarity=0.149 Sum_probs=169.7
Q ss_pred CCCceEEEccCCCCccCCCC-C-CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEE
Q 000128 127 HKDPTAISIPFRGIYEFPER-L-ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLT 204 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp~~-~-~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~ 204 (2123)
.+++++|++++|.+..++.. + .+++|++|++++|.+.+..+ |..+++|++|++++|.++.+|. .++|++|+
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~ 105 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV----GPSIETLH 105 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECcCCccccccC----CCCcCEEE
Confidence 35799999999999977643 3 89999999999999875444 6899999999999999887663 38999999
Q ss_pred cCCCCCC-CCccccCCCCCcEEEccCCCCccccc-ccCCCCCccEEeccCCCCCcccChhhh-CCCCCCCEEEccCcccc
Q 000128 205 LESCLLG-DVATIGDLKKLEILSLRHSDVEELPG-EIGQLTRLKLLDLSNCMKLKVIRPNVI-SSLSRLEELYMGNSFTE 281 (2123)
Q Consensus 205 L~~~~l~-~p~~i~~L~~L~~L~L~~n~l~~lP~-~i~~L~~L~~L~l~~~~~l~~lp~~~i-~~L~~L~~L~l~~n~~~ 281 (2123)
+++|.++ .+. ..+.+|++|++++|+++.++. .++.+++|++|++++|. +..+++..+ ..+++|++|++++|.+.
T Consensus 106 l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 106 AANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp CCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCcCc
Confidence 9999988 332 236889999999999998754 78889999999999998 666654434 57899999999999887
Q ss_pred cccccccccChhhhCCCCCCCEEEEecCCCCCCChhh-hccccceeeeccCCccCCCCCcccceeeecccccCccccchh
Q 000128 282 WEIEGQSNASLVELKQLSRLTTLEVHIPDAQVMPQDL-LSVELERYRICIGDVWSWSGEHETSRRLKLSALNKCIYLGYG 360 (2123)
Q Consensus 282 ~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~p~~ 360 (2123)
.. .....+++|+.|+++.|.+..++..+ ...+|+.+ +++++ ....+|.+
T Consensus 183 ~~---------~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L--------------------~L~~N-~l~~l~~~ 232 (317)
T 3o53_A 183 DV---------KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWI--------------------SLRNN-KLVLIEKA 232 (317)
T ss_dssp EE---------ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEE--------------------ECTTS-CCCEECTT
T ss_pred cc---------ccccccccCCEEECCCCcCCcchhhhcccCcccEE--------------------ECcCC-cccchhhH
Confidence 21 23345889999999999998877654 23444444 44422 11233443
Q ss_pred HHHhccCCcEEecccccCccccccccCCCCCCCCccEEEeecc
Q 000128 361 MQMLLKGIEDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNV 403 (2123)
Q Consensus 361 i~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~ 403 (2123)
+. .+++|+.|+++++......++.+ ++.++.|+.|++.++
T Consensus 233 ~~-~l~~L~~L~l~~N~~~~~~~~~~--~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 233 LR-FSQNLEHFDLRGNGFHCGTLRDF--FSKNQRVQTVAKQTV 272 (317)
T ss_dssp CC-CCTTCCEEECTTCCCBHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred hh-cCCCCCEEEccCCCccCcCHHHH--HhccccceEEECCCc
Confidence 32 24667777777654432233332 356666776666644
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.52 E-value=4.6e-14 Score=165.24 Aligned_cols=164 Identities=16% Similarity=0.227 Sum_probs=124.7
Q ss_pred CCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCC-CCCCCc-ccCCCCCccEEEcCC-CCCC-C-C
Q 000128 139 GIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFR-FPSLPS-SIGCLISLRTLTLES-CLLG-D-V 213 (2123)
Q Consensus 139 ~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~-i~~lp~-~i~~L~~Lr~L~L~~-~~l~-~-p 213 (2123)
++..+|. + .++++.|++++|.+. .+|...|.++++|++|++++|. ++.+|. .+..+++|++|++++ |.++ . +
T Consensus 22 ~l~~ip~-~-~~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 22 DIQRIPS-L-PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp SCSSCCC-C-CTTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred CccccCC-C-CCcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 3667777 3 458899999998887 5666566889999999999996 887765 688899999999998 8888 3 3
Q ss_pred ccccCCCCCcEEEccCCCCcccccccCCCCCcc---EEeccCCCCCcccChhhhCCCCCCC-EEEccCcccccccccccc
Q 000128 214 ATIGDLKKLEILSLRHSDVEELPGEIGQLTRLK---LLDLSNCMKLKVIRPNVISSLSRLE-ELYMGNSFTEWEIEGQSN 289 (2123)
Q Consensus 214 ~~i~~L~~L~~L~L~~n~l~~lP~~i~~L~~L~---~L~l~~~~~l~~lp~~~i~~L~~L~-~L~l~~n~~~~~~~~~~~ 289 (2123)
..+.++++|++|++++|+++.+|. ++.+++|+ +|++++|..+..+|++.++++++|+ +|++++|.+. .+
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i----- 171 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SV----- 171 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EE-----
T ss_pred HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-cc-----
Confidence 678889999999999998888887 88888887 9999988238888877788888888 8888888776 11
Q ss_pred cChhhhCCCCCCCEEEEecCC-CCCC
Q 000128 290 ASLVELKQLSRLTTLEVHIPD-AQVM 314 (2123)
Q Consensus 290 ~~~~~l~~L~~L~~L~l~~~~-~~~~ 314 (2123)
....+.. ++|+.|+++.|. +..+
T Consensus 172 -~~~~~~~-~~L~~L~L~~n~~l~~i 195 (239)
T 2xwt_C 172 -QGYAFNG-TKLDAVYLNKNKYLTVI 195 (239)
T ss_dssp -CTTTTTT-CEEEEEECTTCTTCCEE
T ss_pred -CHhhcCC-CCCCEEEcCCCCCcccC
Confidence 1122222 567777776663 5443
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.52 E-value=4.7e-14 Score=168.57 Aligned_cols=170 Identities=18% Similarity=0.275 Sum_probs=124.0
Q ss_pred ccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcCCCCCC-CC
Q 000128 135 IPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLG-DV 213 (2123)
Q Consensus 135 l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~~l~-~p 213 (2123)
+..+.+..+.....+++|+.|++.+|.+. .++. +..+++|++|++++|.++.++ .++.+++|++|++++|.++ .+
T Consensus 26 l~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~ 101 (272)
T 3rfs_A 26 LKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLP 101 (272)
T ss_dssp HTCSCTTSEECHHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCC
T ss_pred hcCcccccccccccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccC
Confidence 33333333333336778888888888765 3443 467888888888888888764 6788888888888888887 33
Q ss_pred -ccccCCCCCcEEEccCCCCcccccc-cCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccccccccccccC
Q 000128 214 -ATIGDLKKLEILSLRHSDVEELPGE-IGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNAS 291 (2123)
Q Consensus 214 -~~i~~L~~L~~L~L~~n~l~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~~~~~~ 291 (2123)
..++++.+|++|++++|+++.+|.. ++.+++|++|++++|. +..+|+..++++++|++|++++|.+.+ ..
T Consensus 102 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~ 173 (272)
T 3rfs_A 102 NGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQS-------LP 173 (272)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCC-------CC
T ss_pred hhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCc-------cC
Confidence 4578888888888888888877665 6788888888888887 777777767888888888888887762 22
Q ss_pred hhhhCCCCCCCEEEEecCCCCCCCh
Q 000128 292 LVELKQLSRLTTLEVHIPDAQVMPQ 316 (2123)
Q Consensus 292 ~~~l~~L~~L~~L~l~~~~~~~~~~ 316 (2123)
+..++.+++|+.|+++.|.+..++.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred HHHhcCCccCCEEECCCCcCCccCH
Confidence 3446777888888888777665543
No 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.51 E-value=1.3e-13 Score=166.21 Aligned_cols=172 Identities=23% Similarity=0.310 Sum_probs=152.9
Q ss_pred CCCceEEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcC
Q 000128 127 HKDPTAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLE 206 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~ 206 (2123)
+.+++.|++++|.+..++....+++|++|++++|.+.+ ++. +..+++|++|++++|.++.+|. ++.+++|++|+++
T Consensus 45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD-IKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLE 120 (291)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECT
T ss_pred cCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCC-Ccc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECC
Confidence 56899999999999988775589999999999999874 444 6899999999999999998765 9999999999999
Q ss_pred CCCCCCCccccCCCCCcEEEccCCCCcccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCccccccccc
Q 000128 207 SCLLGDVATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEG 286 (2123)
Q Consensus 207 ~~~l~~p~~i~~L~~L~~L~L~~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~ 286 (2123)
+|.++.++.+..+.+|++|++++|+++.+ ..++++++|++|++++|. +..+++ ++.+++|++|++++|.+..
T Consensus 121 ~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L~~N~i~~---- 192 (291)
T 1h6t_A 121 HNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHISD---- 192 (291)
T ss_dssp TSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCB----
T ss_pred CCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEECCCCcCCC----
Confidence 99999778899999999999999999988 579999999999999998 788876 8999999999999998872
Q ss_pred ccccChhhhCCCCCCCEEEEecCCCCCCC
Q 000128 287 QSNASLVELKQLSRLTTLEVHIPDAQVMP 315 (2123)
Q Consensus 287 ~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 315 (2123)
...+..+++|+.|+++.|.+...+
T Consensus 193 -----l~~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 193 -----LRALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp -----CGGGTTCTTCSEEEEEEEEEECCC
T ss_pred -----ChhhccCCCCCEEECcCCcccCCc
Confidence 345899999999999998776544
No 85
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.50 E-value=7.3e-15 Score=190.54 Aligned_cols=235 Identities=15% Similarity=0.115 Sum_probs=106.6
Q ss_pred CceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcCCCCCCCCccccCCCCCcEEEccCC
Q 000128 151 KLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLGDVATIGDLKKLEILSLRHS 230 (2123)
Q Consensus 151 ~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~~l~~p~~i~~L~~L~~L~L~~n 230 (2123)
+|++|++++|.+.+ ++...|..+++|++|+|++|.++..++ ++.+++|++|++++|.++.++ ..++|++|++++|
T Consensus 35 ~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~---~~~~L~~L~L~~N 109 (487)
T 3oja_A 35 NVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLHAANN 109 (487)
T ss_dssp GCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE---ECTTCCEEECCSS
T ss_pred CccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC---CCCCcCEEECcCC
Confidence 44444444444442 222223444444444444444443332 444444444444444443111 1144444444444
Q ss_pred CCcccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccccccccccccChhhhC-CCCCCCEEEEecC
Q 000128 231 DVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELK-QLSRLTTLEVHIP 309 (2123)
Q Consensus 231 ~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~-~L~~L~~L~l~~~ 309 (2123)
.+..+|.. .+++|++|++++|. +..+++..++.+++|++|++++|.+.+.. +..+. .+++|+.|+++.|
T Consensus 110 ~l~~~~~~--~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 110 NISRVSCS--RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVN-------FAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp CCCCEEEC--CCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCCEEE-------GGGGGGGTTTCCEEECTTS
T ss_pred cCCCCCcc--ccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCCCcC-------hHHHhhhCCcccEEecCCC
Confidence 44444332 23444444444444 33333222444444444444444444211 22222 3444444444444
Q ss_pred CCCCCChhhhccccceeeeccCCccCCCCCcccceeeecccccCccccchhHHHhccCCcEEecccccCccccccccCCC
Q 000128 310 DAQVMPQDLLSVELERYRICIGDVWSWSGEHETSRRLKLSALNKCIYLGYGMQMLLKGIEDLYLDELNGFQNALLELEDG 389 (2123)
Q Consensus 310 ~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~p~~i~~~l~~L~~L~L~~~~~~~~~~~~l~~~ 389 (2123)
.+..++.... +++|+.|+++++. ...+|.++. .+++|+.|+++++... . +|. .+
T Consensus 180 ~l~~~~~~~~--------------------l~~L~~L~Ls~N~-l~~~~~~~~-~l~~L~~L~Ls~N~l~-~-lp~--~l 233 (487)
T 3oja_A 180 FIYDVKGQVV--------------------FAKLKTLDLSSNK-LAFMGPEFQ-SAAGVTWISLRNNKLV-L-IEK--AL 233 (487)
T ss_dssp CCCEEECCCC--------------------CTTCCEEECCSSC-CCEECGGGG-GGTTCSEEECTTSCCC-E-ECT--TC
T ss_pred cccccccccc--------------------CCCCCEEECCCCC-CCCCCHhHc-CCCCccEEEecCCcCc-c-cch--hh
Confidence 4433321111 1223333333211 112233322 2678888888885543 3 332 24
Q ss_pred CCCCCccEEEeeccCCc-cEeeccccccCCCcCcccceeeccc
Q 000128 390 EVFPLLKHLHVQNVCEI-LYIVNLVGWEHCNAFPLLESLFLHN 431 (2123)
Q Consensus 390 ~~l~~L~~L~L~~~~~~-~~i~~~~~~~~~~~f~~L~~L~l~~ 431 (2123)
+.+++|+.|++.+|... ..++. ....++.|+.+.+..
T Consensus 234 ~~l~~L~~L~l~~N~l~c~~~~~-----~~~~l~~L~~l~~~~ 271 (487)
T 3oja_A 234 RFSQNLEHFDLRGNGFHCGTLRD-----FFSKNQRVQTVAKQT 271 (487)
T ss_dssp CCCTTCCEEECTTCCBCHHHHHH-----HHTTCHHHHHHHHHH
T ss_pred ccCCCCCEEEcCCCCCcCcchHH-----HHHhCCCCcEEeccc
Confidence 77899999999988543 12222 123567777776653
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.49 E-value=2.5e-14 Score=174.63 Aligned_cols=178 Identities=12% Similarity=0.054 Sum_probs=94.3
Q ss_pred CceEEEccCCCCc-----cCCCCCCCCCceEEEeecCcCCCccchhHh-hCCCCccEEEeecCCCCCC-C----cccCCC
Q 000128 129 DPTAISIPFRGIY-----EFPERLECPKLKLFVLFSENLSLRIPDLFF-EGMTELRVLSFTGFRFPSL-P----SSIGCL 197 (2123)
Q Consensus 129 ~l~~L~l~~n~~~-----~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~-~~l~~Lr~L~L~~n~i~~l-p----~~i~~L 197 (2123)
.++.+.+.+..+. .+.....+++|+.|++++|.+.+..|..++ ..+++|++|++++|.++.. | ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 4555665555443 111112344566666666666555555443 5566666666666666531 2 233456
Q ss_pred CCccEEEcCCCCCC-C-CccccCCCCCcEEEccCCCCcc---ccc--ccCCCCCccEEeccCCCCCcccChh---hhCCC
Q 000128 198 ISLRTLTLESCLLG-D-VATIGDLKKLEILSLRHSDVEE---LPG--EIGQLTRLKLLDLSNCMKLKVIRPN---VISSL 267 (2123)
Q Consensus 198 ~~Lr~L~L~~~~l~-~-p~~i~~L~~L~~L~L~~n~l~~---lP~--~i~~L~~L~~L~l~~~~~l~~lp~~---~i~~L 267 (2123)
++|++|++++|.+. . +..++.+++|++|++++|++.. +|. .++++++|++|++++|. ++.++.. .++.+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcC
Confidence 66666666666665 2 3556666666666666665542 322 23556666666666665 4444331 23455
Q ss_pred CCCCEEEccCcccccccccccccChhhhCCC---CCCCEEEEecCCCCCC
Q 000128 268 SRLEELYMGNSFTEWEIEGQSNASLVELKQL---SRLTTLEVHIPDAQVM 314 (2123)
Q Consensus 268 ~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L---~~L~~L~l~~~~~~~~ 314 (2123)
++|++|++++|.+.+. .+..+..+ ++|++|+++.|.+..+
T Consensus 224 ~~L~~L~Ls~N~l~~~-------~p~~~~~~~~~~~L~~L~Ls~N~l~~l 266 (310)
T 4glp_A 224 VQPHSLDLSHNSLRAT-------VNPSAPRCMWSSALNSLNLSFAGLEQV 266 (310)
T ss_dssp CCCSSEECTTSCCCCC-------CCSCCSSCCCCTTCCCEECCSSCCCSC
T ss_pred CCCCEEECCCCCCCcc-------chhhHHhccCcCcCCEEECCCCCCCch
Confidence 6666666666665521 12222232 4666666666655544
No 87
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.49 E-value=6.3e-14 Score=181.75 Aligned_cols=170 Identities=19% Similarity=0.196 Sum_probs=93.5
Q ss_pred CceEEEccCCCCccCCC-CC-CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcC
Q 000128 129 DPTAISIPFRGIYEFPE-RL-ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLE 206 (2123)
Q Consensus 129 ~l~~L~l~~n~~~~lp~-~~-~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~ 206 (2123)
++++|++++|.+..+++ .+ .+++|++|++++|.+.+..| |..+++|++|++++|.++.+|.. ++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLVG----PSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEEC----TTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCCC----CCcCEEECc
Confidence 56666666666665442 22 56666666666666553333 45666666666666666554432 566666666
Q ss_pred CCCCCCCccccCCCCCcEEEccCCCCccc-ccccCCCCCccEEeccCCCCCcc-cChhhhC-CCCCCCEEEccCcccccc
Q 000128 207 SCLLGDVATIGDLKKLEILSLRHSDVEEL-PGEIGQLTRLKLLDLSNCMKLKV-IRPNVIS-SLSRLEELYMGNSFTEWE 283 (2123)
Q Consensus 207 ~~~l~~p~~i~~L~~L~~L~L~~n~l~~l-P~~i~~L~~L~~L~l~~~~~l~~-lp~~~i~-~L~~L~~L~l~~n~~~~~ 283 (2123)
+|.++.... ..+++|++|++++|.++.+ |..++.+++|++|++++|. +.. .|.. +. .+++|++|++++|.+.+.
T Consensus 108 ~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAE-LAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC-CCEEEGGG-GGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC-CCCcChHH-HhhhCCcccEEecCCCccccc
Confidence 666652111 1345566666666666644 3455666666666666665 333 3333 33 566666666666665521
Q ss_pred cccccccChhhhCCCCCCCEEEEecCCCCCCChh
Q 000128 284 IEGQSNASLVELKQLSRLTTLEVHIPDAQVMPQD 317 (2123)
Q Consensus 284 ~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 317 (2123)
.....+++|+.|+++.|.+..+|..
T Consensus 185 ---------~~~~~l~~L~~L~Ls~N~l~~~~~~ 209 (487)
T 3oja_A 185 ---------KGQVVFAKLKTLDLSSNKLAFMGPE 209 (487)
T ss_dssp ---------ECCCCCTTCCEEECCSSCCCEECGG
T ss_pred ---------cccccCCCCCEEECCCCCCCCCCHh
Confidence 1223456666666666666555443
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.46 E-value=7.2e-13 Score=156.22 Aligned_cols=154 Identities=22% Similarity=0.322 Sum_probs=136.7
Q ss_pred CCCceEEEccCCCCccCCCC-C-CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCC-cccCCCCCccEE
Q 000128 127 HKDPTAISIPFRGIYEFPER-L-ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLP-SSIGCLISLRTL 203 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp~~-~-~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp-~~i~~L~~Lr~L 203 (2123)
..+++.|++++|.+..++.. + ++++|++|++++|.+.+ ++...|..+++|++|++++|.++.+| ..+..+++|++|
T Consensus 34 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 112 (251)
T 3m19_A 34 PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKL 112 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc-cCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEE
Confidence 57899999999999977654 3 89999999999999885 55555689999999999999999887 457899999999
Q ss_pred EcCCCCCC-CC-ccccCCCCCcEEEccCCCCccccc-ccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCccc
Q 000128 204 TLESCLLG-DV-ATIGDLKKLEILSLRHSDVEELPG-EIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFT 280 (2123)
Q Consensus 204 ~L~~~~l~-~p-~~i~~L~~L~~L~L~~n~l~~lP~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~ 280 (2123)
++++|.++ .+ ..++.+.+|++|++++|+++.+|. .++.+++|++|++++|. +..+|+..+..+++|++|++++|.+
T Consensus 113 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred EcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCce
Confidence 99999999 44 457999999999999999999987 58999999999999998 8888887799999999999999988
Q ss_pred cc
Q 000128 281 EW 282 (2123)
Q Consensus 281 ~~ 282 (2123)
..
T Consensus 192 ~c 193 (251)
T 3m19_A 192 DC 193 (251)
T ss_dssp CT
T ss_pred eC
Confidence 73
No 89
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.44 E-value=5.3e-13 Score=153.44 Aligned_cols=149 Identities=16% Similarity=0.240 Sum_probs=119.0
Q ss_pred eEEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCc-ccCCCCCccEEEcCCCC
Q 000128 131 TAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPS-SIGCLISLRTLTLESCL 209 (2123)
Q Consensus 131 ~~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~-~i~~L~~Lr~L~L~~~~ 209 (2123)
+.+++++|.+..+|..+ .+.++.|++++|.+.+..+..+|..+++|++|++++|.++.++. .|..+++|++|++++|.
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 47888888888888755 44678888988888755465667888889999999888887764 78888888888888888
Q ss_pred CC-CC-ccccCCCCCcEEEccCCCCccc-ccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccc
Q 000128 210 LG-DV-ATIGDLKKLEILSLRHSDVEEL-PGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTE 281 (2123)
Q Consensus 210 l~-~p-~~i~~L~~L~~L~L~~n~l~~l-P~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~ 281 (2123)
++ .+ ..++.+.+|++|++++|+++.+ |..+..+++|++|++++|. +..+++..+..+++|++|++++|.+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCc
Confidence 88 33 5588888888888888888876 5678888888888888887 67775555888888888888888776
No 90
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.43 E-value=9.6e-13 Score=152.39 Aligned_cols=149 Identities=23% Similarity=0.280 Sum_probs=128.7
Q ss_pred ceEEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCc-ccCCCCCccEEEcCCC
Q 000128 130 PTAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPS-SIGCLISLRTLTLESC 208 (2123)
Q Consensus 130 l~~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~-~i~~L~~Lr~L~L~~~ 208 (2123)
.+.++.+++.+..+|..+ .++|++|++++|.+.+..| ..|..+++|++|++++|.++.+|. .+..+++|++|+|++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI-PTNAQILYLHDNQITKLEP-GVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCC-CCCCCEEEcCCCccCccCH-HHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 457888899999998766 4889999999999885444 445899999999999999998875 4689999999999999
Q ss_pred CCC-CC-ccccCCCCCcEEEccCCCCcccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccc
Q 000128 209 LLG-DV-ATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTE 281 (2123)
Q Consensus 209 ~l~-~p-~~i~~L~~L~~L~L~~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~ 281 (2123)
.++ .+ ..+..+.+|++|++++|+++.+|..+..+++|++|++++|. +..+|.+.+..+++|++|++.+|.+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 998 44 45789999999999999999999999999999999999998 88888777888999999999998876
No 91
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.43 E-value=4.2e-13 Score=153.31 Aligned_cols=165 Identities=24% Similarity=0.323 Sum_probs=134.2
Q ss_pred eEEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcc-cCCCCCccEEEcCCCC
Q 000128 131 TAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSS-IGCLISLRTLTLESCL 209 (2123)
Q Consensus 131 ~~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~-i~~L~~Lr~L~L~~~~ 209 (2123)
+.++..++.+..+|..+ .++|++|++++|.+. .++..+|..+++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 56777788888888655 568999999999887 56666678899999999999999988754 6889999999999999
Q ss_pred CC-CC-ccccCCCCCcEEEccCCCCcccccc-cCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCccccccccc
Q 000128 210 LG-DV-ATIGDLKKLEILSLRHSDVEELPGE-IGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEG 286 (2123)
Q Consensus 210 l~-~p-~~i~~L~~L~~L~L~~n~l~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~ 286 (2123)
++ .+ ..++++.+|++|++++|+++.+|.. +.++++|++|++++|. +..+|+..+.++++|++|++++|.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~----- 161 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD----- 161 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC-----
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee-----
Confidence 88 44 4578999999999999999988765 6889999999999998 77888877888999999999998765
Q ss_pred ccccChhhhCCCCCCCEEEEecCCCC
Q 000128 287 QSNASLVELKQLSRLTTLEVHIPDAQ 312 (2123)
Q Consensus 287 ~~~~~~~~l~~L~~L~~L~l~~~~~~ 312 (2123)
+.+++|+.|+++.|.+.
T Consensus 162 ---------~~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 162 ---------CTCPGIRYLSEWINKHS 178 (208)
T ss_dssp ---------CCTTTTHHHHHHHHHCT
T ss_pred ---------cCCCCHHHHHHHHHhCC
Confidence 23456666666665543
No 92
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.42 E-value=9.4e-13 Score=151.33 Aligned_cols=148 Identities=21% Similarity=0.277 Sum_probs=110.5
Q ss_pred eEEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCC-CcccCCCCCccEEEcCCCC
Q 000128 131 TAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSL-PSSIGCLISLRTLTLESCL 209 (2123)
Q Consensus 131 ~~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~l-p~~i~~L~~Lr~L~L~~~~ 209 (2123)
+.++.+++.+..+|..+. ++++.|++++|.+. .++...|..+++|++|++++|.++.+ |..|..+++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 467777888888876553 67888888888776 45555567788888888888888765 6677888888888888888
Q ss_pred CC-CC-ccccCCCCCcEEEccCCCCccc-ccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccc
Q 000128 210 LG-DV-ATIGDLKKLEILSLRHSDVEEL-PGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTE 281 (2123)
Q Consensus 210 l~-~p-~~i~~L~~L~~L~L~~n~l~~l-P~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~ 281 (2123)
++ .| ..+.++.+|++|++++|+++.+ |..+..+++|++|++++|. +..++++.+..+++|++|++++|.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 77 44 3467788888888888887766 4557778888888888877 67777666777778888888777664
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.41 E-value=1.4e-12 Score=161.98 Aligned_cols=147 Identities=16% Similarity=0.180 Sum_probs=64.1
Q ss_pred EEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCC-CCC-cccCCCCCccE-EEcCCCC
Q 000128 133 ISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFP-SLP-SSIGCLISLRT-LTLESCL 209 (2123)
Q Consensus 133 L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~-~lp-~~i~~L~~Lr~-L~L~~~~ 209 (2123)
++.++++++++|..+ .++++.|++++|.+. .+|.+.|.++++|++|+|++|.+. .+| ..|.++.+|+. +.+++|.
T Consensus 14 v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 14 FLCQESKVTEIPSDL-PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp EEEESTTCCSCCTTC-CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred EEecCCCCCccCcCc-CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 344444444444433 234455555555444 344444445555555555555443 232 23444444432 3333444
Q ss_pred CC--CCccccCCCCCcEEEccCCCCcccccc-cCCCCCccEEeccCCCCCcccChhhhCCCC-CCCEEEccCcccc
Q 000128 210 LG--DVATIGDLKKLEILSLRHSDVEELPGE-IGQLTRLKLLDLSNCMKLKVIRPNVISSLS-RLEELYMGNSFTE 281 (2123)
Q Consensus 210 l~--~p~~i~~L~~L~~L~L~~n~l~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~-~L~~L~l~~n~~~ 281 (2123)
++ .+..+..+++|++|++++|++..+|.. +....++.+|++.++..+..+|...+..+. .+++|++++|.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 44 234444555555555555554444332 223334444444443334444443333332 3444555554443
No 94
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.41 E-value=6.6e-13 Score=175.10 Aligned_cols=172 Identities=23% Similarity=0.312 Sum_probs=153.0
Q ss_pred CCCceEEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcC
Q 000128 127 HKDPTAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLE 206 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~ 206 (2123)
+.+++.|++++|.+..++....+++|+.|++++|.+.+ ++. +..+++|+.|+|++|.+..+| .+..+++|++|+|+
T Consensus 42 L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD-IKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLE 117 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCC-CGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECT
T ss_pred CCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCC-Chh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEec
Confidence 56899999999999988865589999999999999875 444 589999999999999999877 69999999999999
Q ss_pred CCCCCCCccccCCCCCcEEEccCCCCcccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCccccccccc
Q 000128 207 SCLLGDVATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEG 286 (2123)
Q Consensus 207 ~~~l~~p~~i~~L~~L~~L~L~~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~ 286 (2123)
+|.+..++.+..+.+|+.|+|++|.+..+ ..++.+++|+.|++++|. +..+++ +..+++|++|++++|.+..
T Consensus 118 ~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~i~~---- 189 (605)
T 1m9s_A 118 HNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHISD---- 189 (605)
T ss_dssp TSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCB----
T ss_pred CCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh--hccCCCCCEEECcCCCCCC----
Confidence 99999778899999999999999999988 579999999999999998 777776 8999999999999998872
Q ss_pred ccccChhhhCCCCCCCEEEEecCCCCCCC
Q 000128 287 QSNASLVELKQLSRLTTLEVHIPDAQVMP 315 (2123)
Q Consensus 287 ~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 315 (2123)
+..+..+++|+.|+++.|.+...|
T Consensus 190 -----l~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 190 -----LRALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp -----CGGGTTCTTCSEEECCSEEEECCC
T ss_pred -----ChHHccCCCCCEEEccCCcCcCCc
Confidence 356899999999999988776544
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.41 E-value=2e-12 Score=160.61 Aligned_cols=118 Identities=14% Similarity=0.091 Sum_probs=51.5
Q ss_pred EEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCc-ccCCCCCccEEEcCCCCCC--CC-ccccCCCCCcE-EEcc
Q 000128 154 LFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPS-SIGCLISLRTLTLESCLLG--DV-ATIGDLKKLEI-LSLR 228 (2123)
Q Consensus 154 ~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~-~i~~L~~Lr~L~L~~~~l~--~p-~~i~~L~~L~~-L~L~ 228 (2123)
+++.++++++ .+|.++ .++++.|+|++|.|+.+|. +|.++++|++|+|++|.+. .+ ..|.++.+|+. +.++
T Consensus 13 ~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred EEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 3444444443 344433 2344455555555554443 3444555555555555432 11 33444444432 3333
Q ss_pred CCCCcccc-cccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEcc
Q 000128 229 HSDVEELP-GEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMG 276 (2123)
Q Consensus 229 ~n~l~~lP-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~ 276 (2123)
+|++..+| ..+..+++|++|++++|. +..+|+..+....++..|++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~ 136 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQ 136 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEE
T ss_pred CCcccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhc
Confidence 44444442 234445555555555544 444443323333344444443
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.40 E-value=1e-12 Score=158.23 Aligned_cols=165 Identities=20% Similarity=0.289 Sum_probs=140.8
Q ss_pred CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcCCCCCCCCccccCCCCCcEEEc
Q 000128 148 ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLGDVATIGDLKKLEILSL 227 (2123)
Q Consensus 148 ~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~~l~~p~~i~~L~~L~~L~L 227 (2123)
.+++|+.|++++|.+. .++. +..+++|++|++++|.++.++. ++.+++|++|++++|.++.++.++.+.+|++|++
T Consensus 44 ~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L 119 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL 119 (291)
T ss_dssp HHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEEC
T ss_pred hcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEEC
Confidence 6789999999999886 4553 5789999999999999999887 9999999999999999998778999999999999
Q ss_pred cCCCCcccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccccccccccccChhhhCCCCCCCEEEEe
Q 000128 228 RHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEVH 307 (2123)
Q Consensus 228 ~~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 307 (2123)
++|+++.+| .+..+++|++|++++|. +..++ . ++.+++|++|++++|.+.. ...++.+++|+.|+++
T Consensus 120 ~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~-l~~l~~L~~L~L~~N~l~~---------~~~l~~l~~L~~L~L~ 186 (291)
T 1h6t_A 120 EHNGISDIN-GLVHLPQLESLYLGNNK-ITDIT-V-LSRLTKLDTLSLEDNQISD---------IVPLAGLTKLQNLYLS 186 (291)
T ss_dssp TTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCG-G-GGGCTTCSEEECCSSCCCC---------CGGGTTCTTCCEEECC
T ss_pred CCCcCCCCh-hhcCCCCCCEEEccCCc-CCcch-h-hccCCCCCEEEccCCcccc---------chhhcCCCccCEEECC
Confidence 999999984 68999999999999998 77774 3 8999999999999998872 2228999999999999
Q ss_pred cCCCCCCChhhhccccceeeec
Q 000128 308 IPDAQVMPQDLLSVELERYRIC 329 (2123)
Q Consensus 308 ~~~~~~~~~~~~~~~L~~l~i~ 329 (2123)
.|.+..++.-....+|+.+.+.
T Consensus 187 ~N~i~~l~~l~~l~~L~~L~l~ 208 (291)
T 1h6t_A 187 KNHISDLRALAGLKNLDVLELF 208 (291)
T ss_dssp SSCCCBCGGGTTCTTCSEEEEE
T ss_pred CCcCCCChhhccCCCCCEEECc
Confidence 9999877543344444444443
No 97
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.39 E-value=9.2e-13 Score=160.76 Aligned_cols=188 Identities=18% Similarity=0.145 Sum_probs=146.9
Q ss_pred CCceEEEccCCCCc-cCCCC---CCCCCceEEEeecCcCCCccc---hhHhhCCCCccEEEeecCCCCCCC-cccCCCCC
Q 000128 128 KDPTAISIPFRGIY-EFPER---LECPKLKLFVLFSENLSLRIP---DLFFEGMTELRVLSFTGFRFPSLP-SSIGCLIS 199 (2123)
Q Consensus 128 ~~l~~L~l~~n~~~-~lp~~---~~~~~Lr~L~l~~n~~~~~~p---~~~~~~l~~Lr~L~L~~n~i~~lp-~~i~~L~~ 199 (2123)
.++++|++++|.+. ..|.. ..+++|++|++++|.+.+..+ ...+..+++|++|++++|.+..+| ..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 46999999999988 44444 468999999999999886544 233457999999999999999765 68899999
Q ss_pred ccEEEcCCCCCC----C--CccccCCCCCcEEEccCCCCcccccc----cCCCCCccEEeccCCCCCccc-ChhhhCCC-
Q 000128 200 LRTLTLESCLLG----D--VATIGDLKKLEILSLRHSDVEELPGE----IGQLTRLKLLDLSNCMKLKVI-RPNVISSL- 267 (2123)
Q Consensus 200 Lr~L~L~~~~l~----~--p~~i~~L~~L~~L~L~~n~l~~lP~~----i~~L~~L~~L~l~~~~~l~~l-p~~~i~~L- 267 (2123)
|++|++++|.+. . ...++.+++|++|++++|+++.+|.. ++.+++|++|++++|. +..+ |+. ++.+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~-~~~~~ 248 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPS-APRCM 248 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSC-CSSCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhh-HHhcc
Confidence 999999999975 2 23457899999999999999877653 5788999999999999 5655 665 6666
Q ss_pred --CCCCEEEccCcccccccccccccChhhhCCCCCCCEEEEecCCCCCCChhhhccccceee
Q 000128 268 --SRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQVMPQDLLSVELERYR 327 (2123)
Q Consensus 268 --~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~ 327 (2123)
++|++|++++|.+. .+ +..+. ++|+.|+++.|.+..+|......+|+.+.
T Consensus 249 ~~~~L~~L~Ls~N~l~-~l-------p~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~ 300 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE-QV-------PKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLT 300 (310)
T ss_dssp CCTTCCCEECCSSCCC-SC-------CSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEE
T ss_pred CcCcCCEEECCCCCCC-ch-------hhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEE
Confidence 69999999999987 22 33332 78999999999998775433334444443
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.38 E-value=1.5e-12 Score=147.10 Aligned_cols=146 Identities=18% Similarity=0.232 Sum_probs=69.7
Q ss_pred CCceEEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCC-CCcccCCCCCccEEEcC
Q 000128 128 KDPTAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPS-LPSSIGCLISLRTLTLE 206 (2123)
Q Consensus 128 ~~l~~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~-lp~~i~~L~~Lr~L~L~ 206 (2123)
.++++|++++|.+..+|....+++|++|++++|.+. .++ . +..+++|++|++++|.++. .|..++.+++|++|+++
T Consensus 44 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~-~~~-~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 44 NSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT-NYN-P-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCS-CCG-G-GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CCccEEeccCCCccChHHHhcCCCCCEEEccCCCCC-cch-h-hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 455555555555555553224555555555555332 121 1 3445555555555555542 34445555555555555
Q ss_pred CCCCCC--CccccCCCCCcEEEccCCC-CcccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCccc
Q 000128 207 SCLLGD--VATIGDLKKLEILSLRHSD-VEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFT 280 (2123)
Q Consensus 207 ~~~l~~--p~~i~~L~~L~~L~L~~n~-l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~ 280 (2123)
+|.++. +..++.+++|++|++++|+ +..+| .+..+++|++|++++|. +..++ . +..+++|++|++++|.+
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~-~-l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR-G-IEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT-T-GGGCSSCCEEEECBC--
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH-H-hccCCCCCEEEeeCccc
Confidence 555442 3444555555555555554 44444 34445555555555544 44444 1 44445555555544443
No 99
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.38 E-value=6e-13 Score=157.52 Aligned_cols=169 Identities=18% Similarity=0.208 Sum_probs=129.3
Q ss_pred CceEEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcCCC
Q 000128 129 DPTAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESC 208 (2123)
Q Consensus 129 ~l~~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~ 208 (2123)
++..+++..+.+..++....+++|++|++++|.+. .++ . +..+++|++|++++|.++.+|. ++.+++|++|++++|
T Consensus 20 ~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ-SLA-G-MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS
T ss_pred HHHHHHhcCCCcccccchhhcCcCcEEECcCCCcc-cch-H-HhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC
Confidence 44555666676766664347788888888888776 455 3 4778888888888888888877 888888888888888
Q ss_pred CCCCCccccCCCCCcEEEccCCCCcccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCccccccccccc
Q 000128 209 LLGDVATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQS 288 (2123)
Q Consensus 209 ~l~~p~~i~~L~~L~~L~L~~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~~~ 288 (2123)
.++..+.+.. .+|++|++++|+++.+| .++++++|++|++++|+ +..++. ++.+++|++|++++|.+.+
T Consensus 96 ~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~L~~L~L~~N~i~~------ 164 (263)
T 1xeu_A 96 RLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDLHGNEITN------ 164 (263)
T ss_dssp CCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGG--GGGCTTCCEEECTTSCCCB------
T ss_pred ccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCChH--HccCCCCCEEECCCCcCcc------
Confidence 8884444444 88888888888888876 58888888888888888 777763 7888888888888888762
Q ss_pred ccChhhhCCCCCCCEEEEecCCCCCCC
Q 000128 289 NASLVELKQLSRLTTLEVHIPDAQVMP 315 (2123)
Q Consensus 289 ~~~~~~l~~L~~L~~L~l~~~~~~~~~ 315 (2123)
...+..+++|+.|+++.|.+...|
T Consensus 165 ---~~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 165 ---TGGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp ---CTTSTTCCCCCEEEEEEEEEECCC
T ss_pred ---hHHhccCCCCCEEeCCCCcccCCc
Confidence 156778888888888888765544
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.37 E-value=2.1e-12 Score=145.89 Aligned_cols=151 Identities=17% Similarity=0.238 Sum_probs=131.2
Q ss_pred CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcCCCCCC--CCccccCCCCCcEE
Q 000128 148 ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLG--DVATIGDLKKLEIL 225 (2123)
Q Consensus 148 ~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~~l~--~p~~i~~L~~L~~L 225 (2123)
.+++|+.|++++|.+. .+| . +..+++|++|++++|.++.++ .+..+++|++|++++|.++ .+..++.+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-G-IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-T-GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-H-HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 5789999999999987 667 3 588999999999999887765 6999999999999999998 48899999999999
Q ss_pred EccCCCCcc-cccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccccccccccccChhhhCCCCCCCEE
Q 000128 226 SLRHSDVEE-LPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTL 304 (2123)
Q Consensus 226 ~L~~n~l~~-lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L 304 (2123)
++++|+++. .|..++++++|++|++++|..++.+|. ++.+++|++|++++|.+.. ...+..+++|+.|
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~---------~~~l~~l~~L~~L 186 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD---------YRGIEDFPKLNQL 186 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC---------CTTGGGCSSCCEE
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcC---------hHHhccCCCCCEE
Confidence 999999984 788899999999999999976788873 8999999999999998872 2378889999999
Q ss_pred EEecCCCCC
Q 000128 305 EVHIPDAQV 313 (2123)
Q Consensus 305 ~l~~~~~~~ 313 (2123)
++++|.++.
T Consensus 187 ~l~~N~i~~ 195 (197)
T 4ezg_A 187 YAFSQTIGG 195 (197)
T ss_dssp EECBC----
T ss_pred EeeCcccCC
Confidence 999998764
No 101
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.36 E-value=1.7e-12 Score=161.80 Aligned_cols=171 Identities=22% Similarity=0.228 Sum_probs=125.1
Q ss_pred eEEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhh-CCCCccEEEeecCCCCCCC-cccCCCCCccEEEcCCC
Q 000128 131 TAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFE-GMTELRVLSFTGFRFPSLP-SSIGCLISLRTLTLESC 208 (2123)
Q Consensus 131 ~~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~-~l~~Lr~L~L~~n~i~~lp-~~i~~L~~Lr~L~L~~~ 208 (2123)
+.++++++.+..+|..+ .+.++.|++++|.+. .++...|. .+++|++|+|++|.|+.++ ..|..+++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 56888888888888655 346788888888876 45555556 7888888888888888776 45788888888888888
Q ss_pred CCC-C-CccccCCCCCcEEEccCCCCccc-ccccCCCCCccEEeccCCCCCcccChhhh---CCCCCCCEEEccCccccc
Q 000128 209 LLG-D-VATIGDLKKLEILSLRHSDVEEL-PGEIGQLTRLKLLDLSNCMKLKVIRPNVI---SSLSRLEELYMGNSFTEW 282 (2123)
Q Consensus 209 ~l~-~-p~~i~~L~~L~~L~L~~n~l~~l-P~~i~~L~~L~~L~l~~~~~l~~lp~~~i---~~L~~L~~L~l~~n~~~~ 282 (2123)
.++ . +..|..+.+|++|++++|++..+ |..+..+++|++|++++|. +..+|...+ ..+++|++|++++|.+..
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 887 3 35678888888888888888876 5568888888888888887 777887655 567888888888887762
Q ss_pred ccccccccChhhhCCCCC--CCEEEEecCCC
Q 000128 283 EIEGQSNASLVELKQLSR--LTTLEVHIPDA 311 (2123)
Q Consensus 283 ~~~~~~~~~~~~l~~L~~--L~~L~l~~~~~ 311 (2123)
.....+..++. ++.|+++.|.+
T Consensus 178 -------l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 178 -------LPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp -------CCHHHHHHSCHHHHTTEECCSSCE
T ss_pred -------cCHHHhhhccHhhcceEEecCCCc
Confidence 22345555554 36677776654
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.35 E-value=4e-12 Score=146.07 Aligned_cols=148 Identities=17% Similarity=0.222 Sum_probs=126.2
Q ss_pred eEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCc-ccCCCCCccEEEcCCCCCC--CCccccCCCCCcEEEccC
Q 000128 153 KLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPS-SIGCLISLRTLTLESCLLG--DVATIGDLKKLEILSLRH 229 (2123)
Q Consensus 153 r~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~-~i~~L~~Lr~L~L~~~~l~--~p~~i~~L~~L~~L~L~~ 229 (2123)
+.++++++.+. .+|..+ .+.|+.|++++|.|+.+|. .|..+++|++|++++|.++ .|..|.++.+|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 56788888776 677654 3789999999999998765 7899999999999999998 468899999999999999
Q ss_pred CCCcccccc-cCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccccccccccccChhhhCCCCCCCEEEEec
Q 000128 230 SDVEELPGE-IGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEVHI 308 (2123)
Q Consensus 230 n~l~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 308 (2123)
|+++.+|.. +..+++|++|++++|. +..+++..+..+++|++|++++|.+.. .....+..+++|+.|+++.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~-------~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQT-------IAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSC-------CCTTTTTTCTTCCEEECCS
T ss_pred CcCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCE-------ECHHHHhCCCCCCEEEeCC
Confidence 999999876 5889999999999998 788877679999999999999998872 2245678899999999998
Q ss_pred CCCC
Q 000128 309 PDAQ 312 (2123)
Q Consensus 309 ~~~~ 312 (2123)
|.+.
T Consensus 162 N~~~ 165 (220)
T 2v9t_B 162 NPFI 165 (220)
T ss_dssp SCEE
T ss_pred CCcC
Confidence 8754
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.34 E-value=9.1e-12 Score=162.10 Aligned_cols=162 Identities=18% Similarity=0.281 Sum_probs=129.5
Q ss_pred CceEEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcCCC
Q 000128 129 DPTAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESC 208 (2123)
Q Consensus 129 ~l~~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~ 208 (2123)
+++.|++++|.+..+|..+ .++|++|++++|.+. .+| ..+++|++|++++|.++.+|. ++. +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence 7889999999999888766 488999999999887 677 347899999999999999888 766 8999999999
Q ss_pred CCCCCccccCCCCCcEEEccCCCCcccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCccccccccccc
Q 000128 209 LLGDVATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQS 288 (2123)
Q Consensus 209 ~l~~p~~i~~L~~L~~L~L~~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~~~ 288 (2123)
.++.++. .+.+|++|++++|.++.+|. .+++|++|++++|. +..+|. ++ ++|++|++++|.++ .+
T Consensus 131 ~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls~N~L~-~l---- 195 (571)
T 3cvr_A 131 QLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDVSTNLLE-SL---- 195 (571)
T ss_dssp CCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC--CC--TTCCEEECCSSCCS-SC----
T ss_pred cCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch--hh--CCCCEEECcCCCCC-ch----
Confidence 9884333 68899999999999999887 57899999999998 777887 55 89999999999887 22
Q ss_pred ccChhhhCC-----CCCCCEEEEecCCCCCCChhh
Q 000128 289 NASLVELKQ-----LSRLTTLEVHIPDAQVMPQDL 318 (2123)
Q Consensus 289 ~~~~~~l~~-----L~~L~~L~l~~~~~~~~~~~~ 318 (2123)
+. +.. ...|+.|+++.|.+..+|..+
T Consensus 196 ---p~-~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l 226 (571)
T 3cvr_A 196 ---PA-VPVRNHHSEETEIFFRCRENRITHIPENI 226 (571)
T ss_dssp ---CC-CC--------CCEEEECCSSCCCCCCGGG
T ss_pred ---hh-HHHhhhcccccceEEecCCCcceecCHHH
Confidence 12 322 122388888888888777654
No 104
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.34 E-value=2.2e-13 Score=172.11 Aligned_cols=181 Identities=15% Similarity=0.124 Sum_probs=95.0
Q ss_pred CCceEEEccCCCCcc-----CCCCC-CCCCceEEEeecCc---CCCccchhH------hhCCCCccEEEeecCCCCC---
Q 000128 128 KDPTAISIPFRGIYE-----FPERL-ECPKLKLFVLFSEN---LSLRIPDLF------FEGMTELRVLSFTGFRFPS--- 189 (2123)
Q Consensus 128 ~~l~~L~l~~n~~~~-----lp~~~-~~~~Lr~L~l~~n~---~~~~~p~~~------~~~l~~Lr~L~L~~n~i~~--- 189 (2123)
+++++|++++|.+.. ++..+ .+++|++|++++|. +.+.+|..+ +..+++|++|++++|.+..
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 456666666665552 11112 45666666666642 223344433 3456666666666666654
Q ss_pred --CCcccCCCCCccEEEcCCCCCC--CCcc----ccCC---------CCCcEEEccCCCCc--ccc---cccCCCCCccE
Q 000128 190 --LPSSIGCLISLRTLTLESCLLG--DVAT----IGDL---------KKLEILSLRHSDVE--ELP---GEIGQLTRLKL 247 (2123)
Q Consensus 190 --lp~~i~~L~~Lr~L~L~~~~l~--~p~~----i~~L---------~~L~~L~L~~n~l~--~lP---~~i~~L~~L~~ 247 (2123)
+|..+..+++|++|++++|.++ .+.. +..+ ++|++|++++|++. .+| ..+..+++|++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 4555666666666666666654 1222 2222 56666666666654 333 34555666666
Q ss_pred EeccCCCCCcc-----cChhhhCCCCCCCEEEccCcccccccccccccChhhhCCCCCCCEEEEecCCCC
Q 000128 248 LDLSNCMKLKV-----IRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQ 312 (2123)
Q Consensus 248 L~l~~~~~l~~-----lp~~~i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 312 (2123)
|++++|. +.. +.+..+.++++|++|++++|.+... .....+..+..+++|+.|+++.|.+.
T Consensus 192 L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~---g~~~l~~~l~~~~~L~~L~L~~n~i~ 257 (386)
T 2ca6_A 192 VKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL---GSSALAIALKSWPNLRELGLNDCLLS 257 (386)
T ss_dssp EECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH---HHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred EECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcH---HHHHHHHHHccCCCcCEEECCCCCCc
Confidence 6666665 331 1121255666666666666655310 00122344556666666666655543
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.32 E-value=7.2e-12 Score=143.95 Aligned_cols=148 Identities=16% Similarity=0.165 Sum_probs=126.3
Q ss_pred eEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCC--cccCCCCCccEEEcCCCCCC--CCccccCCCCCcEEEcc
Q 000128 153 KLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLP--SSIGCLISLRTLTLESCLLG--DVATIGDLKKLEILSLR 228 (2123)
Q Consensus 153 r~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp--~~i~~L~~Lr~L~L~~~~l~--~p~~i~~L~~L~~L~L~ 228 (2123)
+++++++|.+. .+|..+ ...+++|++++|.++.++ ..+..+++|++|++++|.++ .+..|+++.+|++|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 58899998876 578654 456789999999999874 34889999999999999999 34689999999999999
Q ss_pred CCCCcccccc-cCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccccccccccccChhhhCCCCCCCEEEEe
Q 000128 229 HSDVEELPGE-IGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEVH 307 (2123)
Q Consensus 229 ~n~l~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 307 (2123)
+|.++.+|.. +..+++|++|++++|. +..+++..++.+++|++|++++|.+.+ ..+..++.+++|+.|+++
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~-------~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITT-------VAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCC-------BCTTTTTTCTTCCEEECC
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCE-------ECHHHhcCCCCCCEEEec
Confidence 9999988765 8999999999999999 777766669999999999999999873 235778899999999999
Q ss_pred cCCCC
Q 000128 308 IPDAQ 312 (2123)
Q Consensus 308 ~~~~~ 312 (2123)
.|.+.
T Consensus 162 ~N~l~ 166 (220)
T 2v70_A 162 ANPFN 166 (220)
T ss_dssp SCCEE
T ss_pred CcCCc
Confidence 88764
No 106
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.31 E-value=5.2e-12 Score=144.15 Aligned_cols=149 Identities=19% Similarity=0.249 Sum_probs=130.2
Q ss_pred CCCceEEEccCCCCccCCCCC--CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcc-cCCCCCccEE
Q 000128 127 HKDPTAISIPFRGIYEFPERL--ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSS-IGCLISLRTL 203 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp~~~--~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~-i~~L~~Lr~L 203 (2123)
.+++++|++++|.+..++... .+++|++|++++|.+. .+|...|..+++|++|++++|.++.+|.. ++.+++|++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence 568999999999999887654 8999999999999987 67777779999999999999999988764 6899999999
Q ss_pred EcCCCCCC-CC-ccccCCCCCcEEEccCCCCcccccc-cCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCccc
Q 000128 204 TLESCLLG-DV-ATIGDLKKLEILSLRHSDVEELPGE-IGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFT 280 (2123)
Q Consensus 204 ~L~~~~l~-~p-~~i~~L~~L~~L~L~~n~l~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~ 280 (2123)
++++|.++ .+ ..+.++.+|++|++++|+++.+|.. +.++++|++|++++|.. .+.+++|+.|++..|.+
T Consensus 106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~~~~~~l~~L~~~~n~~ 177 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW--------DCTCPGIRYLSEWINKH 177 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB--------CCCTTTTHHHHHHHHHC
T ss_pred EcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe--------ecCCCCHHHHHHHHHhC
Confidence 99999998 44 4589999999999999999988876 78999999999999962 35567889999998888
Q ss_pred cccc
Q 000128 281 EWEI 284 (2123)
Q Consensus 281 ~~~~ 284 (2123)
.+.+
T Consensus 178 ~g~i 181 (208)
T 2o6s_A 178 SGVV 181 (208)
T ss_dssp TTTB
T ss_pred Ccee
Confidence 8655
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.30 E-value=1.2e-11 Score=146.34 Aligned_cols=146 Identities=21% Similarity=0.250 Sum_probs=131.2
Q ss_pred CCCceEEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcC
Q 000128 127 HKDPTAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLE 206 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~ 206 (2123)
+.++++|++++|.+..++....+++|+.|++++|.+.+ ++. +..+++|++|++++|.++.+|.... .+|++|+++
T Consensus 40 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~-~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~ 114 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISD-LSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLD 114 (263)
T ss_dssp HTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECC
T ss_pred cCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCC-Chh--hccCCCCCEEECCCCccCCcCcccc--CcccEEEcc
Confidence 57899999999999998855589999999999999874 555 6899999999999999999886444 999999999
Q ss_pred CCCCCCCccccCCCCCcEEEccCCCCcccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccc
Q 000128 207 SCLLGDVATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTE 281 (2123)
Q Consensus 207 ~~~l~~p~~i~~L~~L~~L~L~~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~ 281 (2123)
+|.++.++.++.+.+|++|++++|+++.+| .++.+++|++|++++|. +..++ . +..+++|++|++++|.+.
T Consensus 115 ~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~-i~~~~-~-l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 115 NNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNE-ITNTG-G-LTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp SSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSC-CCBCT-T-STTCCCCCEEEEEEEEEE
T ss_pred CCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCc-CcchH-H-hccCCCCCEEeCCCCccc
Confidence 999997778999999999999999999997 79999999999999998 77773 3 899999999999999876
No 108
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.30 E-value=1.1e-12 Score=162.39 Aligned_cols=174 Identities=17% Similarity=0.214 Sum_probs=134.3
Q ss_pred CCceEEEccCCCCccCCC-CCCCCCceEEEeecCcCCCc-cchhHhhCCCCccEEEeecCCCC-CCCcccCCCCCccEEE
Q 000128 128 KDPTAISIPFRGIYEFPE-RLECPKLKLFVLFSENLSLR-IPDLFFEGMTELRVLSFTGFRFP-SLPSSIGCLISLRTLT 204 (2123)
Q Consensus 128 ~~l~~L~l~~n~~~~lp~-~~~~~~Lr~L~l~~n~~~~~-~p~~~~~~l~~Lr~L~L~~n~i~-~lp~~i~~L~~Lr~L~ 204 (2123)
.+++.+++.+|.+...+. ...+++|++|++++|.+.+. ++. ++..+++|++|++++|.++ ..|..++.+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG-ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHH-HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHH-HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 467888888888774433 33788999999998887654 444 4588899999999999887 5677888899999999
Q ss_pred cCCC-CCC---CCccccCCCCCcEEEccCC-CCcc--cccccCCCC-CccEEeccCCC-CC--cccChhhhCCCCCCCEE
Q 000128 205 LESC-LLG---DVATIGDLKKLEILSLRHS-DVEE--LPGEIGQLT-RLKLLDLSNCM-KL--KVIRPNVISSLSRLEEL 273 (2123)
Q Consensus 205 L~~~-~l~---~p~~i~~L~~L~~L~L~~n-~l~~--lP~~i~~L~-~L~~L~l~~~~-~l--~~lp~~~i~~L~~L~~L 273 (2123)
+++| .++ .+..+.++++|++|++++| .++. +|..+..++ +|++|++++|. .+ ..+|.. ++++++|++|
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~-~~~~~~L~~L 227 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL-VRRCPNLVHL 227 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH-HHHCTTCSEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH-HhhCCCCCEE
Confidence 9998 577 2455788889999999998 8874 677788888 99999999884 13 445554 6788999999
Q ss_pred EccCcc-cccccccccccChhhhCCCCCCCEEEEecCC
Q 000128 274 YMGNSF-TEWEIEGQSNASLVELKQLSRLTTLEVHIPD 310 (2123)
Q Consensus 274 ~l~~n~-~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 310 (2123)
++++|. ++. ..+..++++++|+.|+++.|.
T Consensus 228 ~l~~~~~l~~-------~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 228 DLSDSVMLKN-------DCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp ECTTCTTCCG-------GGGGGGGGCTTCCEEECTTCT
T ss_pred eCCCCCcCCH-------HHHHHHhCCCCCCEeeCCCCC
Confidence 998887 442 235677888889999888775
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.29 E-value=1.6e-11 Score=142.15 Aligned_cols=149 Identities=22% Similarity=0.233 Sum_probs=127.3
Q ss_pred ceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCC-CcccCCCCCccEEEcCCCCCC-CC-ccccCCCCCcEEEcc
Q 000128 152 LKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSL-PSSIGCLISLRTLTLESCLLG-DV-ATIGDLKKLEILSLR 228 (2123)
Q Consensus 152 Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~l-p~~i~~L~~Lr~L~L~~~~l~-~p-~~i~~L~~L~~L~L~ 228 (2123)
-+.++.+++.+. .+|..+ .++|++|++++|.++.+ |..+..+++|++|++++|.++ .+ ..+..+.+|++|+++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 456888877765 678754 48899999999999977 677999999999999999998 44 567999999999999
Q ss_pred CCCCcccccc-cCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccccccccccccChhhhCCCCCCCEEEEe
Q 000128 229 HSDVEELPGE-IGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEVH 307 (2123)
Q Consensus 229 ~n~l~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 307 (2123)
+|+++.+|.. +..+++|++|++++|. +..+|.. +.++++|++|++++|.+.. .....+..+++|+.|+++
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~~-------~~~~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRG-IERLTHLTHLALDQNQLKS-------IPHGAFDRLSSLTHAYLF 167 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTT-GGGCTTCSEEECCSSCCCC-------CCTTTTTTCTTCCEEECT
T ss_pred CCcCCccChhHhCcchhhCeEeccCCc-ccccCcc-cccCCCCCEEECCCCcCCc-------cCHHHHhCCCCCCEEEee
Confidence 9999998776 6899999999999998 8899987 8999999999999998872 223568889999999999
Q ss_pred cCCCCC
Q 000128 308 IPDAQV 313 (2123)
Q Consensus 308 ~~~~~~ 313 (2123)
.|.+..
T Consensus 168 ~N~~~c 173 (229)
T 3e6j_A 168 GNPWDC 173 (229)
T ss_dssp TSCBCT
T ss_pred CCCccC
Confidence 887653
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.29 E-value=6.5e-12 Score=165.67 Aligned_cols=179 Identities=18% Similarity=0.255 Sum_probs=146.5
Q ss_pred EccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcCCCCCCCC
Q 000128 134 SIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLGDV 213 (2123)
Q Consensus 134 ~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~~l~~p 213 (2123)
.+..+.+..+.....+++|+.|++++|.+. .++. +..+++|+.|+|++|.+..+|. +..+++|++|+|++|.+..+
T Consensus 27 ~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l 102 (605)
T 1m9s_A 27 NLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDL 102 (605)
T ss_dssp HTTCSCTTSEECHHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCC
T ss_pred hccCCCcccccchhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCC
Confidence 334444444433346889999999999876 4553 5889999999999999999887 99999999999999999977
Q ss_pred ccccCCCCCcEEEccCCCCcccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccccccccccccChh
Q 000128 214 ATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLV 293 (2123)
Q Consensus 214 ~~i~~L~~L~~L~L~~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~ 293 (2123)
+.++.+.+|++|+|++|.+..+| .+..+++|+.|++++|. +..++ . ++.+++|++|++++|.+.+. +
T Consensus 103 ~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~-~-l~~l~~L~~L~Ls~N~l~~~--------~- 169 (605)
T 1m9s_A 103 SSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDIT-V-LSRLTKLDTLSLEDNQISDI--------V- 169 (605)
T ss_dssp TTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCCG-G-GGSCTTCSEEECCSSCCCCC--------G-
T ss_pred hhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCc-cCCch-h-hcccCCCCEEECcCCcCCCc--------h-
Confidence 78999999999999999999875 68999999999999998 77774 3 89999999999999988721 2
Q ss_pred hhCCCCCCCEEEEecCCCCCCChhhhccccceeeec
Q 000128 294 ELKQLSRLTTLEVHIPDAQVMPQDLLSVELERYRIC 329 (2123)
Q Consensus 294 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~ 329 (2123)
.+..+++|+.|+++.|.+..++....+.+|+.|.+.
T Consensus 170 ~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~ 205 (605)
T 1m9s_A 170 PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELF 205 (605)
T ss_dssp GGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECC
T ss_pred hhccCCCCCEEECcCCCCCCChHHccCCCCCEEEcc
Confidence 289999999999999999877543344455555443
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.28 E-value=7.8e-12 Score=155.88 Aligned_cols=153 Identities=22% Similarity=0.302 Sum_probs=134.6
Q ss_pred CCCceEEEccCCCCccCCCCC---CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCc-ccCCCCCccE
Q 000128 127 HKDPTAISIPFRGIYEFPERL---ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPS-SIGCLISLRT 202 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp~~~---~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~-~i~~L~~Lr~ 202 (2123)
...++.|++++|.+..++... .+++|++|++++|.+. .++...|..+++|++|+|++|.++.+|. .|..+.+|++
T Consensus 38 ~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 116 (361)
T 2xot_A 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEV 116 (361)
T ss_dssp CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCE
Confidence 567899999999999877653 7899999999999988 5665567999999999999999998865 6899999999
Q ss_pred EEcCCCCCC--CCccccCCCCCcEEEccCCCCccccccc----CCCCCccEEeccCCCCCcccChhhhCCCCC--CCEEE
Q 000128 203 LTLESCLLG--DVATIGDLKKLEILSLRHSDVEELPGEI----GQLTRLKLLDLSNCMKLKVIRPNVISSLSR--LEELY 274 (2123)
Q Consensus 203 L~L~~~~l~--~p~~i~~L~~L~~L~L~~n~l~~lP~~i----~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~--L~~L~ 274 (2123)
|+|++|.|+ .+..|.++.+|++|++++|+++.+|..+ ..+++|++|++++|. +..+|...+..++. ++.|+
T Consensus 117 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~~~l~~l~ 195 (361)
T 2xot_A 117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQKLPAWVKNGLY 195 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHHHHSCHHHHTTEE
T ss_pred EECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhhhccHhhcceEE
Confidence 999999999 4688999999999999999999999875 679999999999998 88999877888887 48899
Q ss_pred ccCcccc
Q 000128 275 MGNSFTE 281 (2123)
Q Consensus 275 l~~n~~~ 281 (2123)
+.+|.+.
T Consensus 196 l~~N~~~ 202 (361)
T 2xot_A 196 LHNNPLE 202 (361)
T ss_dssp CCSSCEE
T ss_pred ecCCCcc
Confidence 9999876
No 112
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.27 E-value=2.3e-12 Score=159.68 Aligned_cols=128 Identities=17% Similarity=0.163 Sum_probs=63.4
Q ss_pred CCccEEEeecCCCCCCCcccCCCCCccEEEcCCCCCC---CCccccCCCCCcEEEccCCCCc-ccccccCCCCCccEEec
Q 000128 175 TELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLG---DVATIGDLKKLEILSLRHSDVE-ELPGEIGQLTRLKLLDL 250 (2123)
Q Consensus 175 ~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~~l~---~p~~i~~L~~L~~L~L~~n~l~-~lP~~i~~L~~L~~L~l 250 (2123)
+.+++|++++|.+...+..+..+++|++|++++|.++ .+..+..+++|++|++++|.+. ..|..++++++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 4555555555555544444455555555555555544 2234455555555555555554 34445555555555555
Q ss_pred cCCCCCcc--cChhhhCCCCCCCEEEccCc-ccccccccccccChhhhCCCC-CCCEEEEecC
Q 000128 251 SNCMKLKV--IRPNVISSLSRLEELYMGNS-FTEWEIEGQSNASLVELKQLS-RLTTLEVHIP 309 (2123)
Q Consensus 251 ~~~~~l~~--lp~~~i~~L~~L~~L~l~~n-~~~~~~~~~~~~~~~~l~~L~-~L~~L~l~~~ 309 (2123)
++|..+.. ++.. ++++++|++|++++| .+... ..+..++.++ +|++|+++.|
T Consensus 150 ~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~------~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 150 SGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTEK------HVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCHH------HHHHHHHHSCTTCCEEECCSC
T ss_pred CCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcChH------HHHHHHHhcccCCCEEEeCCC
Confidence 55522332 3332 455555555555555 44311 0123344455 5555555544
No 113
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.27 E-value=2.5e-12 Score=160.63 Aligned_cols=46 Identities=13% Similarity=-0.005 Sum_probs=24.8
Q ss_pred chhHHHhccCCcEEecccccCcccccccc-CCCCCCCCccEEEeecc
Q 000128 358 GYGMQMLLKGIEDLYLDELNGFQNALLEL-EDGEVFPLLKHLHVQNV 403 (2123)
Q Consensus 358 p~~i~~~l~~L~~L~L~~~~~~~~~~~~l-~~~~~l~~L~~L~L~~~ 403 (2123)
+..+....++|+.|+|+++.........+ ..+..+++|++|++++|
T Consensus 217 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 217 AYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp HHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred HHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccC
Confidence 33333333577788887754332111111 02366777888888776
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.25 E-value=3e-11 Score=157.21 Aligned_cols=159 Identities=18% Similarity=0.202 Sum_probs=136.9
Q ss_pred CCCceEEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcC
Q 000128 127 HKDPTAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLE 206 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~ 206 (2123)
.++++.|++++|.+..+| ..+++|++|++++|.+.+ +|. + .+ +|++|++++|.++.+|. .+++|++|+++
T Consensus 79 ~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~-ip~-l-~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls 148 (571)
T 3cvr_A 79 PPQITVLEITQNALISLP--ELPASLEYLDACDNRLST-LPE-L-PA--SLKHLDVDNNQLTMLPE---LPALLEYINAD 148 (571)
T ss_dssp CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC-CCC-C-CT--TCCEEECCSSCCSCCCC---CCTTCCEEECC
T ss_pred cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC-cch-h-hc--CCCEEECCCCcCCCCCC---cCccccEEeCC
Confidence 468999999999999999 457999999999999985 887 4 44 99999999999999998 68999999999
Q ss_pred CCCCCCCccccCCCCCcEEEccCCCCcccccccCCCCCccEEeccCCCCCcccChhhhCCCCCC-------CEEEccCcc
Q 000128 207 SCLLGDVATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRL-------EELYMGNSF 279 (2123)
Q Consensus 207 ~~~l~~p~~i~~L~~L~~L~L~~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L-------~~L~l~~n~ 279 (2123)
+|.++.++. .+.+|++|++++|+++.+|. +. ++|++|++++|. +..+|. +.. +| ++|++++|.
T Consensus 149 ~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~-L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~ 218 (571)
T 3cvr_A 149 NNQLTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL-LESLPA--VPV--RNHHSEETEIFFRCRENR 218 (571)
T ss_dssp SSCCSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC-CSSCCC--CC----------CCEEEECCSSC
T ss_pred CCccCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC-CCchhh--HHH--hhhcccccceEEecCCCc
Confidence 999994333 68899999999999999998 76 899999999998 888987 444 67 999999999
Q ss_pred cccccccccccChhhhCCCCCCCEEEEecCCCCC
Q 000128 280 TEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQV 313 (2123)
Q Consensus 280 ~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 313 (2123)
++ ..+..+.++++|+.|+++.|.+..
T Consensus 219 l~--------~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 219 IT--------HIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp CC--------CCCGGGGGSCTTEEEECCSSSCCH
T ss_pred ce--------ecCHHHhcCCCCCEEEeeCCcCCC
Confidence 87 346678889999999999998864
No 115
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.25 E-value=1.5e-12 Score=162.69 Aligned_cols=183 Identities=13% Similarity=0.226 Sum_probs=93.7
Q ss_pred CCceEEEccCCCCccCCC-----CC-CCC-CceEEEeecCcCCCccchhHhhCC-----CCccEEEeecCCCCCCC-cc-
Q 000128 128 KDPTAISIPFRGIYEFPE-----RL-ECP-KLKLFVLFSENLSLRIPDLFFEGM-----TELRVLSFTGFRFPSLP-SS- 193 (2123)
Q Consensus 128 ~~l~~L~l~~n~~~~lp~-----~~-~~~-~Lr~L~l~~n~~~~~~p~~~~~~l-----~~Lr~L~L~~n~i~~lp-~~- 193 (2123)
.++++|++++|.+...+. .+ .++ +|++|++++|.+....+..+ ..+ ++|++|++++|.++..+ ..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l-~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDEL-VQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHH-HHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHH-HHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 346666666666664442 11 455 66666666666554333332 222 66666666666665332 21
Q ss_pred ---cCCC-CCccEEEcCCCCCC-C-Ccc----ccCC-CCCcEEEccCCCCc-----ccccccCCCC-CccEEeccCCCCC
Q 000128 194 ---IGCL-ISLRTLTLESCLLG-D-VAT----IGDL-KKLEILSLRHSDVE-----ELPGEIGQLT-RLKLLDLSNCMKL 256 (2123)
Q Consensus 194 ---i~~L-~~Lr~L~L~~~~l~-~-p~~----i~~L-~~L~~L~L~~n~l~-----~lP~~i~~L~-~L~~L~l~~~~~l 256 (2123)
+..+ ++|++|++++|.++ . +.. +..+ .+|++|++++|++. .++..+..+. +|++|++++|. +
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l 179 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN-L 179 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-G
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC-C
Confidence 3333 56666666666655 2 122 2232 46666666666655 3444444544 66666666665 4
Q ss_pred cccChhh----hCCC-CCCCEEEccCcccccccccccccChhhhCCC-CCCCEEEEecCCCCCCC
Q 000128 257 KVIRPNV----ISSL-SRLEELYMGNSFTEWEIEGQSNASLVELKQL-SRLTTLEVHIPDAQVMP 315 (2123)
Q Consensus 257 ~~lp~~~----i~~L-~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L-~~L~~L~l~~~~~~~~~ 315 (2123)
+...... +... ++|++|++++|.+... .....+..+..+ ++|+.|+++.|.+...+
T Consensus 180 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~---~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 180 ASKNCAELAKFLASIPASVTSLDLSANLLGLK---SYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS---CHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred chhhHHHHHHHHHhCCCCCCEEECCCCCCChh---HHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 4433311 2233 4666666666665411 001122333332 36666666666655443
No 116
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.23 E-value=8.7e-13 Score=166.65 Aligned_cols=166 Identities=16% Similarity=0.167 Sum_probs=116.4
Q ss_pred cCCCCC-CCCCceEEEeecCcCCCccchh---HhhCCCCccEEEeecCCCCC----CCccc-------CCCCCccEEEcC
Q 000128 142 EFPERL-ECPKLKLFVLFSENLSLRIPDL---FFEGMTELRVLSFTGFRFPS----LPSSI-------GCLISLRTLTLE 206 (2123)
Q Consensus 142 ~lp~~~-~~~~Lr~L~l~~n~~~~~~p~~---~~~~l~~Lr~L~L~~n~i~~----lp~~i-------~~L~~Lr~L~L~ 206 (2123)
.++..+ .+++|++|++++|.+....+.. .+..+++|++|++++|.+.. +|..+ ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 344333 6788999999998877543332 24678899999999876653 34444 688899999999
Q ss_pred CCCCCC------CccccCCCCCcEEEccCCCCc-----ccccccCCC---------CCccEEeccCCCCCc--ccCh--h
Q 000128 207 SCLLGD------VATIGDLKKLEILSLRHSDVE-----ELPGEIGQL---------TRLKLLDLSNCMKLK--VIRP--N 262 (2123)
Q Consensus 207 ~~~l~~------p~~i~~L~~L~~L~L~~n~l~-----~lP~~i~~L---------~~L~~L~l~~~~~l~--~lp~--~ 262 (2123)
+|.++. +..+..+++|++|++++|.+. .++..+..+ ++|++|++++|. +. .+|. .
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~ 181 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAK 181 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHHHH
Confidence 998873 356788889999999999886 234444444 889999998888 43 3442 2
Q ss_pred hhCCCCCCCEEEccCcccccccccccccChh-hhCCCCCCCEEEEecCCC
Q 000128 263 VISSLSRLEELYMGNSFTEWEIEGQSNASLV-ELKQLSRLTTLEVHIPDA 311 (2123)
Q Consensus 263 ~i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~-~l~~L~~L~~L~l~~~~~ 311 (2123)
.+..+++|++|++++|.+... ....... .+.++++|+.|+++.|.+
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~---g~~~l~~~~l~~~~~L~~L~Ls~n~l 228 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPE---GIEHLLLEGLAYCQELKVLDLQDNTF 228 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHH---HHHHHHHTTGGGCTTCCEEECCSSCC
T ss_pred HHHhCCCcCEEECcCCCCCHh---HHHHHHHHHhhcCCCccEEECcCCCC
Confidence 266788899999988877611 0001122 677888888888888876
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.22 E-value=1.7e-11 Score=134.53 Aligned_cols=136 Identities=24% Similarity=0.190 Sum_probs=65.8
Q ss_pred CCccEEEeecCCCC--CCCcccCCCCCccEEEcCCCCCCCCccccCCCCCcEEEccCCCCcc-cccccCCCCCccEEecc
Q 000128 175 TELRVLSFTGFRFP--SLPSSIGCLISLRTLTLESCLLGDVATIGDLKKLEILSLRHSDVEE-LPGEIGQLTRLKLLDLS 251 (2123)
Q Consensus 175 ~~Lr~L~L~~n~i~--~lp~~i~~L~~Lr~L~L~~~~l~~p~~i~~L~~L~~L~L~~n~l~~-lP~~i~~L~~L~~L~l~ 251 (2123)
++|++|++++|.++ .+|..+..+++|++|++++|.++.+..++.+++|++|++++|++.. +|..++++++|++|+++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence 44555555555554 4454445555555555555555433445555555555555555554 44444445555555555
Q ss_pred CCCCCcccCh-hhhCCCCCCCEEEccCcccccccccccccChhhhCCCCCCCEEEEecCCCCCCC
Q 000128 252 NCMKLKVIRP-NVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQVMP 315 (2123)
Q Consensus 252 ~~~~l~~lp~-~~i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 315 (2123)
+|. +..+|. ..++.+++|++|++++|.+.... ......+..+++|++|+++.|....+|
T Consensus 104 ~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~----~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 104 GNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLN----DYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp SSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTST----THHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred CCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchH----HHHHHHHHhCccCcEecCCCCChhhcc
Confidence 554 444431 22455555555555555544110 000124555555555555555544443
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.21 E-value=2.2e-11 Score=133.64 Aligned_cols=129 Identities=22% Similarity=0.228 Sum_probs=70.6
Q ss_pred CCceEEEeecCcCC-CccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcCCCCCC--CCccccCCCCCcEEE
Q 000128 150 PKLKLFVLFSENLS-LRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLG--DVATIGDLKKLEILS 226 (2123)
Q Consensus 150 ~~Lr~L~l~~n~~~-~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~~l~--~p~~i~~L~~L~~L~ 226 (2123)
++|+.|++++|.+. +.+|.. +..+++|++|++++|.++.+ ..++.+++|++|++++|.++ .|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 34455555555443 334433 24555566666666655555 45555666666666666655 223334466666666
Q ss_pred ccCCCCcccc--cccCCCCCccEEeccCCCCCcccCh---hhhCCCCCCCEEEccCcccc
Q 000128 227 LRHSDVEELP--GEIGQLTRLKLLDLSNCMKLKVIRP---NVISSLSRLEELYMGNSFTE 281 (2123)
Q Consensus 227 L~~n~l~~lP--~~i~~L~~L~~L~l~~~~~l~~lp~---~~i~~L~~L~~L~l~~n~~~ 281 (2123)
+++|.++.+| ..+..+++|++|++++|. +..+|. ..+..+++|++|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 6666666554 455666666666666665 555554 23566666666666555443
No 119
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.20 E-value=6.5e-13 Score=174.59 Aligned_cols=99 Identities=18% Similarity=0.171 Sum_probs=78.2
Q ss_pred chhHHHHHHHhHhcCCCchhhHHHH-----------hcccCCCCCccChhHHHHHHHhc--CCccccccHHHHHHHHHHH
Q 000128 5 DANVNSIIELSYNFLESEEAKSLFR-----------LCGLLNGGSQIPIDALMRCGMGL--GLLKGVYTLQEARKRVHML 71 (2123)
Q Consensus 5 ~~~i~~~L~lSY~~Lp~~~lK~cFl-----------yca~Fp~d~~i~~~~Li~~Wiae--Gfi~~~~~~~~~~~~~~~~ 71 (2123)
.++|+++|++||++||.+ +|+||+ |||+||+|+.|+ |++|+|+ ||+.+.......++.++ |
T Consensus 360 ~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~ 433 (549)
T 2a5y_B 360 LVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-R 433 (549)
T ss_dssp SSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-H
T ss_pred HHHHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-H
Confidence 346788999999999995 999999 999999999998 8999999 99986432223456666 9
Q ss_pred HHHHHHcCCcccCC--CcCeEEechhHHHHHHHHHHHHhh
Q 000128 72 VNFLKASRLLLDGD--AEECLKMHDIIHSIAASVATEELM 109 (2123)
Q Consensus 72 i~~L~~rsll~~~~--~~~~~~mHDlv~dla~~i~~~e~~ 109 (2123)
|++|++|||++... ...+|+|||+|||+|+.++++++.
T Consensus 434 l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 434 LKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 99999999998653 345899999999999999987743
No 120
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.17 E-value=8.6e-11 Score=131.65 Aligned_cols=123 Identities=19% Similarity=0.271 Sum_probs=85.2
Q ss_pred EEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcCCCCCC-C-CccccCCCCCcEEEccCCC
Q 000128 154 LFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLG-D-VATIGDLKKLEILSLRHSD 231 (2123)
Q Consensus 154 ~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~~l~-~-p~~i~~L~~L~~L~L~~n~ 231 (2123)
++++++|.+. .+|..+ .+.|++|++++|.++.+|..+..+++|++|++++|.|+ . +..|.++.+|++|++++|+
T Consensus 14 ~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 4445554443 445433 24677777777777777777777777777777777777 2 3567777777777777777
Q ss_pred Cccccc-ccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccc
Q 000128 232 VEELPG-EIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTE 281 (2123)
Q Consensus 232 l~~lP~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~ 281 (2123)
++.+|. .+..+++|++|++++|. +..+|++.+..+++|++|++++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence 776654 47777778888887777 67777766777777888887777664
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.15 E-value=9.8e-11 Score=131.31 Aligned_cols=105 Identities=19% Similarity=0.270 Sum_probs=47.9
Q ss_pred CccEEEeecCCCCCCCcc--cCCCCCccEEEcCCCCCC--CCccccCCCCCcEEEccCCCCcccccc-cCCCCCccEEec
Q 000128 176 ELRVLSFTGFRFPSLPSS--IGCLISLRTLTLESCLLG--DVATIGDLKKLEILSLRHSDVEELPGE-IGQLTRLKLLDL 250 (2123)
Q Consensus 176 ~Lr~L~L~~n~i~~lp~~--i~~L~~Lr~L~L~~~~l~--~p~~i~~L~~L~~L~L~~n~l~~lP~~-i~~L~~L~~L~l 250 (2123)
.|++|++++|.++.+|.. ++.+++|++|++++|.++ .|..++++.+|++|++++|+++.+|.. +..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 344444444444444331 444444444444444444 233444444455555555544444332 444555555555
Q ss_pred cCCCCCcccChhhhCCCCCCCEEEccCcccc
Q 000128 251 SNCMKLKVIRPNVISSLSRLEELYMGNSFTE 281 (2123)
Q Consensus 251 ~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~ 281 (2123)
++|. +..+++..++.+++|++|++++|.+.
T Consensus 110 ~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 110 YDNQ-ISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSSC-CCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCc-CCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 5554 33333333445555555555554443
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.15 E-value=2.5e-11 Score=130.18 Aligned_cols=106 Identities=22% Similarity=0.212 Sum_probs=54.7
Q ss_pred CCccEEEeecCCCC--CCCcccCCCCCccEEEcCCCCCCCCccccCCCCCcEEEccCCCCcc-cccccCCCCCccEEecc
Q 000128 175 TELRVLSFTGFRFP--SLPSSIGCLISLRTLTLESCLLGDVATIGDLKKLEILSLRHSDVEE-LPGEIGQLTRLKLLDLS 251 (2123)
Q Consensus 175 ~~Lr~L~L~~n~i~--~lp~~i~~L~~Lr~L~L~~~~l~~p~~i~~L~~L~~L~L~~n~l~~-lP~~i~~L~~L~~L~l~ 251 (2123)
++|+.|++++|.++ .+|..++.+++|++|++++|.++....++.+++|++|++++|.++. +|..++.+++|++|+++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 44555555555554 4555555555555555555555533445555555555555555554 44444455555555555
Q ss_pred CCCCCcccCh-hhhCCCCCCCEEEccCcccc
Q 000128 252 NCMKLKVIRP-NVISSLSRLEELYMGNSFTE 281 (2123)
Q Consensus 252 ~~~~l~~lp~-~~i~~L~~L~~L~l~~n~~~ 281 (2123)
+|. +..+|. ..++.+++|++|++++|.+.
T Consensus 97 ~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 97 GNK-IKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp TSC-CCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred CCc-CCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 555 444331 12555555555555555544
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.15 E-value=3.9e-12 Score=166.84 Aligned_cols=189 Identities=17% Similarity=0.191 Sum_probs=127.0
Q ss_pred CCCceEEEccCCCCccCCCCC-CCCCceEEEeecCc-------------CCCccchhHhhCCCCccEEE-eecCCCCCCC
Q 000128 127 HKDPTAISIPFRGIYEFPERL-ECPKLKLFVLFSEN-------------LSLRIPDLFFEGMTELRVLS-FTGFRFPSLP 191 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp~~~-~~~~Lr~L~l~~n~-------------~~~~~p~~~~~~l~~Lr~L~-L~~n~i~~lp 191 (2123)
.+++++|++++|.+..+|..+ .+++|+.|++++|. ..+..|. .++.+++|+.|+ ++.|.+..++
T Consensus 348 ~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~-~l~~l~~L~~L~~l~~n~~~~L~ 426 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKE-TLQYFSTLKAVDPMRAAYLDDLR 426 (567)
T ss_dssp TTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHH-HHHHHHHHHHHCGGGHHHHHHHH
T ss_pred CccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHH-HHHHHHhcccCcchhhcccchhh
Confidence 456667777777777777766 67777777775543 2333333 345666666666 4444322221
Q ss_pred c------ccCC--CCCccEEEcCCCCCCCCccccCCCCCcEEEccCCCCcccccccCCCCCccEEeccCCCCCcccChhh
Q 000128 192 S------SIGC--LISLRTLTLESCLLGDVATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNV 263 (2123)
Q Consensus 192 ~------~i~~--L~~Lr~L~L~~~~l~~p~~i~~L~~L~~L~L~~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~ 263 (2123)
. .+.. ...|++|++++|.++.++.++.+.+|++|++++|.++.+|..++++++|++|++++|. +..+| .
T Consensus 427 ~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~- 503 (567)
T 1dce_A 427 SKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-G- 503 (567)
T ss_dssp HHHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-G-
T ss_pred hhhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-c-
Confidence 1 0110 1247888888888874334888888888888888888888888888888888888887 67777 4
Q ss_pred hCCCCCCCEEEccCcccccccccccccC-hhhhCCCCCCCEEEEecCCCCCCChhh-----hcccccee
Q 000128 264 ISSLSRLEELYMGNSFTEWEIEGQSNAS-LVELKQLSRLTTLEVHIPDAQVMPQDL-----LSVELERY 326 (2123)
Q Consensus 264 i~~L~~L~~L~l~~n~~~~~~~~~~~~~-~~~l~~L~~L~~L~l~~~~~~~~~~~~-----~~~~L~~l 326 (2123)
++++++|++|++++|.+.+ .. +..++.+++|+.|+++.|.+..+|... .+.+|+.|
T Consensus 504 l~~l~~L~~L~Ls~N~l~~-------~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 504 VANLPRLQELLLCNNRLQQ-------SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp GTTCSSCCEEECCSSCCCS-------SSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred cCCCCCCcEEECCCCCCCC-------CCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 7888888888888887762 12 667788888888888888877665432 24455554
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.14 E-value=2e-10 Score=128.77 Aligned_cols=125 Identities=19% Similarity=0.263 Sum_probs=110.5
Q ss_pred eEEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCC-CcccCCCCCccEEEcCCCC
Q 000128 131 TAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSL-PSSIGCLISLRTLTLESCL 209 (2123)
Q Consensus 131 ~~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~l-p~~i~~L~~Lr~L~L~~~~ 209 (2123)
+.++++++.+..+|..+ ..++++|++++|.+.+..+..+|..+++|++|++++|.++.+ |..|+.+++|++|++++|.
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 68999999999999866 349999999999987544445578999999999999999977 7889999999999999999
Q ss_pred CC--CCccccCCCCCcEEEccCCCCccc-ccccCCCCCccEEeccCCCCC
Q 000128 210 LG--DVATIGDLKKLEILSLRHSDVEEL-PGEIGQLTRLKLLDLSNCMKL 256 (2123)
Q Consensus 210 l~--~p~~i~~L~~L~~L~L~~n~l~~l-P~~i~~L~~L~~L~l~~~~~l 256 (2123)
++ .+..+.++.+|++|++++|+++.+ |..++.+++|++|++++|...
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 99 446799999999999999999966 778999999999999999843
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.14 E-value=4.4e-11 Score=162.13 Aligned_cols=153 Identities=20% Similarity=0.200 Sum_probs=94.6
Q ss_pred CCCceEEEccCCCCccCCCCC-CCCCceEEE-----eecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCc
Q 000128 127 HKDPTAISIPFRGIYEFPERL-ECPKLKLFV-----LFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISL 200 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp~~~-~~~~Lr~L~-----l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~L 200 (2123)
..+++++++.+|.+...+... ...+|+.+. +..|.+. ++.+.|..++.|++|+|++|.+..+|..+.++.+|
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L 249 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFL 249 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSC
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCC
Confidence 456888888888877655433 233333332 2233322 45555688888999999999888888888888899
Q ss_pred cEEEcCCCCCC-CCccccCCCCCcEEEccCCCCcccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcc
Q 000128 201 RTLTLESCLLG-DVATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSF 279 (2123)
Q Consensus 201 r~L~L~~~~l~-~p~~i~~L~~L~~L~L~~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~ 279 (2123)
++|+|++|.|+ .|..|++|.+|++|+|++|+++.+|..|++|++|++|++++|. ++.+|.+ |+++++|++|++++|.
T Consensus 250 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~-~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 250 TRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWE-FGNLCNLQFLGVEGNP 327 (727)
T ss_dssp SCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSS-TTSCTTCCCEECTTSC
T ss_pred CEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC-CCccChh-hhcCCCccEEeCCCCc
Confidence 99999999888 6778888899999999999888888888888899999998887 7888887 8888888888888888
Q ss_pred cccc
Q 000128 280 TEWE 283 (2123)
Q Consensus 280 ~~~~ 283 (2123)
+.+.
T Consensus 328 l~~~ 331 (727)
T 4b8c_D 328 LEKQ 331 (727)
T ss_dssp CCSH
T ss_pred cCCC
Confidence 7743
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.13 E-value=5.2e-11 Score=127.62 Aligned_cols=126 Identities=24% Similarity=0.266 Sum_probs=110.4
Q ss_pred CCCCceEEEeecCcCC-CccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcCCCCCC--CCccccCCCCCcE
Q 000128 148 ECPKLKLFVLFSENLS-LRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLG--DVATIGDLKKLEI 224 (2123)
Q Consensus 148 ~~~~Lr~L~l~~n~~~-~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~~l~--~p~~i~~L~~L~~ 224 (2123)
..++++.|++++|.+. +.+|.. +..+++|++|++++|.++.+ ..++.+++|++|++++|.++ .|..++.+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3578999999999987 677764 48999999999999999988 77999999999999999998 3456677999999
Q ss_pred EEccCCCCcccc--cccCCCCCccEEeccCCCCCcccCh---hhhCCCCCCCEEEcc
Q 000128 225 LSLRHSDVEELP--GEIGQLTRLKLLDLSNCMKLKVIRP---NVISSLSRLEELYMG 276 (2123)
Q Consensus 225 L~L~~n~l~~lP--~~i~~L~~L~~L~l~~~~~l~~lp~---~~i~~L~~L~~L~l~ 276 (2123)
|++++|+++.+| ..++.+++|++|++++|. +..+|+ ..++.+++|++|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 999999999876 789999999999999998 788876 458899999999865
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.10 E-value=3.8e-10 Score=126.40 Aligned_cols=126 Identities=20% Similarity=0.238 Sum_probs=111.1
Q ss_pred ccEEEeecCCCCCCCcccCCCCCccEEEcCCCCCC-CCccccCCCCCcEEEccCCCCccccc-ccCCCCCccEEeccCCC
Q 000128 177 LRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLG-DVATIGDLKKLEILSLRHSDVEELPG-EIGQLTRLKLLDLSNCM 254 (2123)
Q Consensus 177 Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~~l~-~p~~i~~L~~L~~L~L~~n~l~~lP~-~i~~L~~L~~L~l~~~~ 254 (2123)
-++++++++.++.+|..+. .+|++|++++|.++ .|..+.++.+|++|++++|.++.+|. .|..+++|++|++++|.
T Consensus 12 ~~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 3689999999999998765 68999999999999 67899999999999999999998875 59999999999999999
Q ss_pred CCcccChhhhCCCCCCCEEEccCcccccccccccccChhhhCCCCCCCEEEEecCCCC
Q 000128 255 KLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQ 312 (2123)
Q Consensus 255 ~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 312 (2123)
+..+++..++.+++|++|++++|.+.. .....+..+++|+.|+++.|.+.
T Consensus 90 -l~~i~~~~f~~l~~L~~L~L~~N~l~~-------~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 -LRCIPPRTFDGLKSLRLLSLHGNDISV-------VPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp -CCBCCTTTTTTCTTCCEEECCSSCCCB-------CCTTTTTTCTTCCEEECCSSCEE
T ss_pred -cCEeCHHHhCCCCCCCEEECCCCCCCe-------eChhhhhcCccccEEEeCCCCee
Confidence 888888779999999999999999872 22345788999999999988754
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.09 E-value=1.1e-10 Score=129.02 Aligned_cols=107 Identities=17% Similarity=0.276 Sum_probs=49.5
Q ss_pred CCCCccEEEeecCCCCCCCcccCCCC-CccEEEcCCCCCCCCccccCCCCCcEEEccCCCCccccccc-CCCCCccEEec
Q 000128 173 GMTELRVLSFTGFRFPSLPSSIGCLI-SLRTLTLESCLLGDVATIGDLKKLEILSLRHSDVEELPGEI-GQLTRLKLLDL 250 (2123)
Q Consensus 173 ~l~~Lr~L~L~~n~i~~lp~~i~~L~-~Lr~L~L~~~~l~~p~~i~~L~~L~~L~L~~n~l~~lP~~i-~~L~~L~~L~l 250 (2123)
.+.+|++|++++|.++.+|. +..+. +|++|++++|.++.++.++.+.+|++|++++|+++.+|..+ +.+++|++|++
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred CcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 34444444444444444432 22222 45555555544443344444555555555555555444333 44555555555
Q ss_pred cCCCCCcccCh-hhhCCCCCCCEEEccCcccc
Q 000128 251 SNCMKLKVIRP-NVISSLSRLEELYMGNSFTE 281 (2123)
Q Consensus 251 ~~~~~l~~lp~-~~i~~L~~L~~L~l~~n~~~ 281 (2123)
++|. ++.+|. ..++.+++|++|++++|.+.
T Consensus 96 ~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 96 TNNS-LVELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp CSCC-CCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred CCCc-CCcchhhHhhhcCCCCCEEEecCCCCC
Confidence 5554 444443 11444555555555555443
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.08 E-value=4.6e-11 Score=132.03 Aligned_cols=131 Identities=15% Similarity=0.131 Sum_probs=103.8
Q ss_pred CCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcCCCCCC-CCcc-ccCCCCCcE
Q 000128 147 LECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLG-DVAT-IGDLKKLEI 224 (2123)
Q Consensus 147 ~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~~l~-~p~~-i~~L~~L~~ 224 (2123)
.++++|+.|++++|.+. .+|. +....++|++|++++|.++.+ ..++.+++|++|++++|.++ .|+. ++.+++|++
T Consensus 16 ~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp ECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 36777888888888776 4543 333344899999999988877 57888899999999999988 4444 488899999
Q ss_pred EEccCCCCccccc--ccCCCCCccEEeccCCCCCcccChh---hhCCCCCCCEEEccCcccc
Q 000128 225 LSLRHSDVEELPG--EIGQLTRLKLLDLSNCMKLKVIRPN---VISSLSRLEELYMGNSFTE 281 (2123)
Q Consensus 225 L~L~~n~l~~lP~--~i~~L~~L~~L~l~~~~~l~~lp~~---~i~~L~~L~~L~l~~n~~~ 281 (2123)
|++++|++..+|. .++.+++|++|++++|. +..+|.. +++.+++|++|++++|...
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 9999999988887 78889999999999988 7777764 4788888898888877654
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.04 E-value=3.9e-11 Score=162.64 Aligned_cols=132 Identities=23% Similarity=0.232 Sum_probs=113.7
Q ss_pred CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcCCCCCC-CCccccCCCCCcEEE
Q 000128 148 ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLG-DVATIGDLKKLEILS 226 (2123)
Q Consensus 148 ~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~~l~-~p~~i~~L~~L~~L~ 226 (2123)
.++.|+.|++++|.+. .+|..+| .+++|++|+|++|.|+.+|..|++|++|++|+|++|.|+ .|..|++|.+|++|+
T Consensus 222 ~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY 299 (727)
T ss_dssp CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEE
T ss_pred cCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEE
Confidence 7899999999999987 7888875 899999999999999999999999999999999999999 788999999999999
Q ss_pred ccCCCCcccccccCCCCCccEEeccCCCCCcccChhhhCCCCC-CCEEEccCccccc
Q 000128 227 LRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSR-LEELYMGNSFTEW 282 (2123)
Q Consensus 227 L~~n~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~-L~~L~l~~n~~~~ 282 (2123)
|++|.++.+|..|++|++|++|++++|. +...++..+..+.. +..+++++|.+.+
T Consensus 300 L~~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~~~~~~~l~l~~N~l~~ 355 (727)
T 4b8c_D 300 FFDNMVTTLPWEFGNLCNLQFLGVEGNP-LEKQFLKILTEKSVTGLIFYLRDNRPEI 355 (727)
T ss_dssp CCSSCCCCCCSSTTSCTTCCCEECTTSC-CCSHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCccChhhhcCCCccEEeCCCCc-cCCCChHHHhhcchhhhHHhhccCcccC
Confidence 9999999999999999999999999999 55444443544321 2235677777663
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.03 E-value=1.4e-09 Score=120.39 Aligned_cols=106 Identities=25% Similarity=0.374 Sum_probs=55.7
Q ss_pred CCccEEEeecCCCCCCCc-ccCCCCCccEEEcCCCCCC-CC-ccccCCCCCcEEEccCCCCcccccc-cCCCCCccEEec
Q 000128 175 TELRVLSFTGFRFPSLPS-SIGCLISLRTLTLESCLLG-DV-ATIGDLKKLEILSLRHSDVEELPGE-IGQLTRLKLLDL 250 (2123)
Q Consensus 175 ~~Lr~L~L~~n~i~~lp~-~i~~L~~Lr~L~L~~~~l~-~p-~~i~~L~~L~~L~L~~n~l~~lP~~-i~~L~~L~~L~l 250 (2123)
++|++|++++|.++.+|. .++.+++|++|++++|.++ .+ ..++.+.+|++|++++|+++.+|.. ++.+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 345555555555554443 2345555555555555554 22 2345555555555555555555443 455556666666
Q ss_pred cCCCCCcccChhhhCCCCCCCEEEccCcccc
Q 000128 251 SNCMKLKVIRPNVISSLSRLEELYMGNSFTE 281 (2123)
Q Consensus 251 ~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~ 281 (2123)
++|. +..+|++.+..+++|++|++++|.+.
T Consensus 108 ~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 108 DTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 5555 45555554455556666665555544
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.01 E-value=1.5e-09 Score=120.08 Aligned_cols=126 Identities=24% Similarity=0.281 Sum_probs=109.7
Q ss_pred ceEEEccCCCCccCCCCCCCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcc-cCCCCCccEEEcCCC
Q 000128 130 PTAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSS-IGCLISLRTLTLESC 208 (2123)
Q Consensus 130 l~~L~l~~n~~~~lp~~~~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~-i~~L~~Lr~L~L~~~ 208 (2123)
.+.++++++.+..+|..+ .++|++|++++|.+. .+|...|..+++|++|++++|.++.+|.. ++.+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI-PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTC-CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCC-CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 467889999999888655 479999999999987 56766678999999999999999988764 689999999999999
Q ss_pred CCC-CC-ccccCCCCCcEEEccCCCCcccccc-cCCCCCccEEeccCCCCCc
Q 000128 209 LLG-DV-ATIGDLKKLEILSLRHSDVEELPGE-IGQLTRLKLLDLSNCMKLK 257 (2123)
Q Consensus 209 ~l~-~p-~~i~~L~~L~~L~L~~n~l~~lP~~-i~~L~~L~~L~l~~~~~l~ 257 (2123)
.++ .+ ..++.+.+|++|++++|+++.+|.. +..+++|++|++++|....
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 999 44 4578999999999999999999887 5789999999999998433
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.95 E-value=6.2e-12 Score=142.13 Aligned_cols=132 Identities=20% Similarity=0.264 Sum_probs=89.2
Q ss_pred hhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcCCCCCC-CCccccCCCCCcEEEccCCCCcccccccCCCCCccEEe
Q 000128 171 FEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLG-DVATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLD 249 (2123)
Q Consensus 171 ~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~~l~-~p~~i~~L~~L~~L~L~~n~l~~lP~~i~~L~~L~~L~ 249 (2123)
|..+++|++|++++|.++.+| .++.+++|++|++++|.++ .|..+..+++|++|++++|+++.+| .++.+++|++|+
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLY 121 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEE
T ss_pred HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEE
Confidence 467777777777777777777 6777777777777777776 5555666677777888777777776 577777788888
Q ss_pred ccCCCCCcccCh-hhhCCCCCCCEEEccCcccccccccc---cccChhhhCCCCCCCEEE
Q 000128 250 LSNCMKLKVIRP-NVISSLSRLEELYMGNSFTEWEIEGQ---SNASLVELKQLSRLTTLE 305 (2123)
Q Consensus 250 l~~~~~l~~lp~-~~i~~L~~L~~L~l~~n~~~~~~~~~---~~~~~~~l~~L~~L~~L~ 305 (2123)
+++|. +..++. ..++.+++|++|++++|.+.+..+.. .......+..+++|+.|+
T Consensus 122 l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 122 MSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp ESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 87777 665554 23677788888888777765322110 011122366777777765
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.92 E-value=1.8e-09 Score=141.69 Aligned_cols=123 Identities=21% Similarity=0.203 Sum_probs=107.0
Q ss_pred CccEEEeecCCCCCCCcccCCCCCccEEEcCCCCCC-CCccccCCCCCcEEEccCCCCcccccccCCCCCccEEeccCCC
Q 000128 176 ELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLG-DVATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCM 254 (2123)
Q Consensus 176 ~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~~l~-~p~~i~~L~~L~~L~L~~n~l~~lP~~i~~L~~L~~L~l~~~~ 254 (2123)
.|++|++++|.++.+|. ++.+++|++|++++|.++ .|..++++++|++|++++|+++.+| .++++++|++|++++|.
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 59999999999999997 999999999999999999 7889999999999999999999999 89999999999999998
Q ss_pred CCccc--ChhhhCCCCCCCEEEccCcccccccccccccChhhhCCCCCCCEEEE
Q 000128 255 KLKVI--RPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEV 306 (2123)
Q Consensus 255 ~l~~l--p~~~i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l 306 (2123)
+..+ |.. ++.+++|++|++++|.+.+.. .....-+..+++|+.|++
T Consensus 520 -l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~----~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 520 -LQQSAAIQP-LVSCPRLVLLNLQGNSLCQEE----GIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -CCSSSTTGG-GGGCTTCCEEECTTSGGGGSS----SCTTHHHHHCTTCSEEEC
T ss_pred -CCCCCCcHH-HhcCCCCCEEEecCCcCCCCc----cHHHHHHHHCcccCccCC
Confidence 7777 665 999999999999999987432 122233455888988863
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.91 E-value=4.3e-09 Score=115.53 Aligned_cols=101 Identities=23% Similarity=0.347 Sum_probs=79.3
Q ss_pred cEEEeecCCCCCCCcccCCCCCccEEEcCCCCCC-C-CccccCCCCCcEEEccCCCCcccccc-cCCCCCccEEeccCCC
Q 000128 178 RVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLG-D-VATIGDLKKLEILSLRHSDVEELPGE-IGQLTRLKLLDLSNCM 254 (2123)
Q Consensus 178 r~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~~l~-~-p~~i~~L~~L~~L~L~~n~l~~lP~~-i~~L~~L~~L~l~~~~ 254 (2123)
+.++++++.++.+|..+. .+|++|++++|.++ . |..++++.+|++|++++|+++.+|.. ++++++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 678888888888887664 77888888888877 3 46778888888888888888888776 4778888888888887
Q ss_pred CCcccChhhhCCCCCCCEEEccCcccc
Q 000128 255 KLKVIRPNVISSLSRLEELYMGNSFTE 281 (2123)
Q Consensus 255 ~l~~lp~~~i~~L~~L~~L~l~~n~~~ 281 (2123)
+..+|++.++++++|++|++++|.+.
T Consensus 93 -l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 -LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp -CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred -cceeCHHHhccccCCCEEEeCCCCcc
Confidence 77777766777888888888887765
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.90 E-value=4.3e-09 Score=115.11 Aligned_cols=102 Identities=23% Similarity=0.311 Sum_probs=82.8
Q ss_pred ccEEEeecCCCCCCCcccCCCCCccEEEcCCCCCC-C-CccccCCCCCcEEEccCCCCcccccc-cCCCCCccEEeccCC
Q 000128 177 LRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLG-D-VATIGDLKKLEILSLRHSDVEELPGE-IGQLTRLKLLDLSNC 253 (2123)
Q Consensus 177 Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~~l~-~-p~~i~~L~~L~~L~L~~n~l~~lP~~-i~~L~~L~~L~l~~~ 253 (2123)
.+++++++|.++.+|..+. .+|++|++++|.|+ . +..++++.+|++|++++|+++.+|.. +..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 5778888888888887664 78888888888887 3 46788888888888888888888775 578888888888888
Q ss_pred CCCcccChhhhCCCCCCCEEEccCcccc
Q 000128 254 MKLKVIRPNVISSLSRLEELYMGNSFTE 281 (2123)
Q Consensus 254 ~~l~~lp~~~i~~L~~L~~L~l~~n~~~ 281 (2123)
. +..+|++.++++++|++|++++|.+.
T Consensus 89 ~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 Q-LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred c-cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 7 77788766788888888888888765
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.82 E-value=6.7e-11 Score=133.60 Aligned_cols=147 Identities=18% Similarity=0.207 Sum_probs=120.8
Q ss_pred CceEEEccCC--CCccCCCCC-CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEc
Q 000128 129 DPTAISIPFR--GIYEFPERL-ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTL 205 (2123)
Q Consensus 129 ~l~~L~l~~n--~~~~lp~~~-~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L 205 (2123)
.++...+.+. .++.+|..+ .+++|++|++++|.+.+ +| . +..+++|++|++++|.++.+|..+..+++|++|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-S-LSGMENLRILSLGRNLIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-C-HHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-c-cccCCCCCEEECCCCCcccccchhhcCCcCCEEEC
Confidence 4555666544 444555444 78999999999999874 77 3 58899999999999999999998888899999999
Q ss_pred CCCCCCCCccccCCCCCcEEEccCCCCccccc--ccCCCCCccEEeccCCCCCcccC----------hhhhCCCCCCCEE
Q 000128 206 ESCLLGDVATIGDLKKLEILSLRHSDVEELPG--EIGQLTRLKLLDLSNCMKLKVIR----------PNVISSLSRLEEL 273 (2123)
Q Consensus 206 ~~~~l~~p~~i~~L~~L~~L~L~~n~l~~lP~--~i~~L~~L~~L~l~~~~~l~~lp----------~~~i~~L~~L~~L 273 (2123)
++|.++.++.++.+++|++|++++|+++.+|. .+..+++|++|++++|. +...+ ...+..+++|++|
T Consensus 101 ~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 101 SYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp EEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred cCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEE
Confidence 99999966678999999999999999998875 79999999999999998 53332 2347889999999
Q ss_pred EccCcccc
Q 000128 274 YMGNSFTE 281 (2123)
Q Consensus 274 ~l~~n~~~ 281 (2123)
+ ++.+.
T Consensus 180 d--~~~i~ 185 (198)
T 1ds9_A 180 D--GMPVD 185 (198)
T ss_dssp C--CGGGT
T ss_pred C--CcccC
Confidence 7 55554
No 138
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=98.78 E-value=4.6e-09 Score=138.50 Aligned_cols=84 Identities=21% Similarity=0.243 Sum_probs=74.4
Q ss_pred chhHHHHHHHhHhcCCCchh-hHHHHhcccCCCCCccChhHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHcCCccc
Q 000128 5 DANVNSIIELSYNFLESEEA-KSLFRLCGLLNGGSQIPIDALMRCGMGLGLLKGVYTLQEARKRVHMLVNFLKASRLLLD 83 (2123)
Q Consensus 5 ~~~i~~~L~lSY~~Lp~~~l-K~cFlyca~Fp~d~~i~~~~Li~~WiaeGfi~~~~~~~~~~~~~~~~i~~L~~rsll~~ 83 (2123)
+++|.++|++||+.||++ . |+||+|||+||+|+.|+++.++.+|+++|- +.+..++++|+++||++.
T Consensus 352 ~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeGe-----------edAe~~L~eLvdRSLLq~ 419 (1221)
T 1vt4_I 352 CDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-----------SDVMVVVNKLHKYSLVEK 419 (1221)
T ss_dssp CHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-----------HHHHHHHHHHHTSSSSSB
T ss_pred hhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH-----------HHHHHHHHHHHhhCCEEE
Confidence 357999999999999996 8 999999999999999999999999999981 135679999999999987
Q ss_pred CCCcCeEEechhHHHHH
Q 000128 84 GDAEECLKMHDIIHSIA 100 (2123)
Q Consensus 84 ~~~~~~~~mHDlv~dla 100 (2123)
.+...+|+|||+++|++
T Consensus 420 d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 420 QPKESTISIPSIYLELK 436 (1221)
T ss_dssp CSSSSEEBCCCHHHHHH
T ss_pred eCCCCEEEehHHHHHHh
Confidence 65567899999999965
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.74 E-value=3.4e-08 Score=108.35 Aligned_cols=104 Identities=20% Similarity=0.233 Sum_probs=67.3
Q ss_pred eEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCC-CcccCCCCCccEEEcCCCCCC-CCc-cccCCCCCcEEEccC
Q 000128 153 KLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSL-PSSIGCLISLRTLTLESCLLG-DVA-TIGDLKKLEILSLRH 229 (2123)
Q Consensus 153 r~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~l-p~~i~~L~~Lr~L~L~~~~l~-~p~-~i~~L~~L~~L~L~~ 229 (2123)
+.+++++|.+. .+|..+ .+.|++|++++|.++.+ |..|+++++|++|+|++|.|+ .|. .+.++.+|++|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 44555555543 455443 25666777777777655 455667777777777777766 333 356777777777777
Q ss_pred CCCcccccc-cCCCCCccEEeccCCCCCcccCh
Q 000128 230 SDVEELPGE-IGQLTRLKLLDLSNCMKLKVIRP 261 (2123)
Q Consensus 230 n~l~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~ 261 (2123)
|+++.+|.. ++.+++|++|++++|. +...+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNP-WDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSC-BCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCC-cccccc
Confidence 777777665 7777777777777776 444443
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.67 E-value=7e-08 Score=105.45 Aligned_cols=98 Identities=22% Similarity=0.258 Sum_probs=60.8
Q ss_pred eEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCC-CcccCCCCCccEEEcCCCCCC-CC-ccccCCCCCcEEEccC
Q 000128 153 KLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSL-PSSIGCLISLRTLTLESCLLG-DV-ATIGDLKKLEILSLRH 229 (2123)
Q Consensus 153 r~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~l-p~~i~~L~~Lr~L~L~~~~l~-~p-~~i~~L~~L~~L~L~~ 229 (2123)
+++++++|.+. .+|..+ .+.|++|++++|.|+.+ |..|+.+++|++|+|++|.|+ .+ ..+.++.+|++|++++
T Consensus 12 ~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 34455554443 344433 25566666666666655 445666666777777666666 33 3456677777777777
Q ss_pred CCCcccccc-cCCCCCccEEeccCCC
Q 000128 230 SDVEELPGE-IGQLTRLKLLDLSNCM 254 (2123)
Q Consensus 230 n~l~~lP~~-i~~L~~L~~L~l~~~~ 254 (2123)
|+++.+|.. +.++++|++|++++|.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 777766654 6677777777777776
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.67 E-value=3e-08 Score=121.74 Aligned_cols=180 Identities=17% Similarity=0.178 Sum_probs=104.0
Q ss_pred CCCceEEEccCCCCc--------------------cCCCCC--C--------CCCceEEEeecCcCCCccchhHhhCCCC
Q 000128 127 HKDPTAISIPFRGIY--------------------EFPERL--E--------CPKLKLFVLFSENLSLRIPDLFFEGMTE 176 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~--------------------~lp~~~--~--------~~~Lr~L~l~~n~~~~~~p~~~~~~l~~ 176 (2123)
..+++.|++++|.+. .+|... + +++|+.+.+.. .+. .++...|.++++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIK-NIEDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCC-EECTTTTTTCTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-ccc-chhHHHhhcCcc
Confidence 357888888887776 233322 4 66666666665 443 455556666666
Q ss_pred ccEEEeecCCCCCCC-cccCCCCCccEEEcCCCCC----CC--Cccc---------------------------------
Q 000128 177 LRVLSFTGFRFPSLP-SSIGCLISLRTLTLESCLL----GD--VATI--------------------------------- 216 (2123)
Q Consensus 177 Lr~L~L~~n~i~~lp-~~i~~L~~Lr~L~L~~~~l----~~--p~~i--------------------------------- 216 (2123)
|+.+++.+|.+..++ .+|..+.++.++.+..+.. .. ...+
T Consensus 126 L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~ 205 (329)
T 3sb4_A 126 LKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN 205 (329)
T ss_dssp CCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred cceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence 666666666665443 3455555555555443110 00 0000
Q ss_pred -----------------cCCCCCcEEEccCCCCcccccc-cCCCCCccEEeccCCCCCcccChhhhCCCCCCC-EEEccC
Q 000128 217 -----------------GDLKKLEILSLRHSDVEELPGE-IGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLE-ELYMGN 277 (2123)
Q Consensus 217 -----------------~~L~~L~~L~L~~n~l~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~-~L~l~~ 277 (2123)
..+.+|+.+++++|+++.+|.. |..+.+|+.+++.+| +..++.++|.++++|+ .+.+.+
T Consensus 206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp EEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT
T ss_pred eEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc
Confidence 0155677777777667766654 666677777777665 5666666677777776 676655
Q ss_pred cccccccccccccChhhhCCCCCCCEEEEecCCCCCCChhh
Q 000128 278 SFTEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQVMPQDL 318 (2123)
Q Consensus 278 n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~ 318 (2123)
.+. ......+.++++|+.+++..|.+..++..+
T Consensus 284 -~l~-------~I~~~aF~~c~~L~~l~l~~n~i~~I~~~a 316 (329)
T 3sb4_A 284 -SVT-------AIEFGAFMGCDNLRYVLATGDKITTLGDEL 316 (329)
T ss_dssp -TCC-------EECTTTTTTCTTEEEEEECSSCCCEECTTT
T ss_pred -cce-------EEchhhhhCCccCCEEEeCCCccCccchhh
Confidence 332 112345666677777776666666665544
No 142
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.47 E-value=1.3e-07 Score=139.24 Aligned_cols=89 Identities=13% Similarity=0.198 Sum_probs=77.8
Q ss_pred hhHHHHHHHhHhcCCCchhhHHHHhcccCCCCCccChhHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHcCCcccCC
Q 000128 6 ANVNSIIELSYNFLESEEAKSLFRLCGLLNGGSQIPIDALMRCGMGLGLLKGVYTLQEARKRVHMLVNFLKASRLLLDGD 85 (2123)
Q Consensus 6 ~~i~~~L~lSY~~Lp~~~lK~cFlyca~Fp~d~~i~~~~Li~~WiaeGfi~~~~~~~~~~~~~~~~i~~L~~rsll~~~~ 85 (2123)
+.|+.+|++||+.||++ +|+||+|||+||+++.|+++.++++|.+++ +.+++++++|+++||++...
T Consensus 362 ~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~------------~~~~~~l~~L~~~sl~~~~~ 428 (1249)
T 3sfz_A 362 EALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLET------------EEVEDILQEFVNKSLLFCNR 428 (1249)
T ss_dssp HHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCCH------------HHHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHHHHHHHhCCHH-HHHHHHHhCccCCCCeeCHHHHHHHhCCCH------------HHHHHHHHHHHhccceEEec
Confidence 46999999999999996 999999999999999999999999997662 34567899999999998543
Q ss_pred Cc--CeEEechhHHHHHHHHHHHH
Q 000128 86 AE--ECLKMHDIIHSIAASVATEE 107 (2123)
Q Consensus 86 ~~--~~~~mHDlv~dla~~i~~~e 107 (2123)
.. .+|+|||+||++|+..++++
T Consensus 429 ~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 429 NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred CCCceEEEecHHHHHHHHhhhhHH
Confidence 32 26999999999999998776
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.45 E-value=3.8e-07 Score=112.96 Aligned_cols=100 Identities=23% Similarity=0.179 Sum_probs=78.6
Q ss_pred EEEeecC-CCCCCCcccCCCCCccEEEcCC-CCCC-CC-ccccCCCCCcEEEccCCCCccccc-ccCCCCCccEEeccCC
Q 000128 179 VLSFTGF-RFPSLPSSIGCLISLRTLTLES-CLLG-DV-ATIGDLKKLEILSLRHSDVEELPG-EIGQLTRLKLLDLSNC 253 (2123)
Q Consensus 179 ~L~L~~n-~i~~lp~~i~~L~~Lr~L~L~~-~~l~-~p-~~i~~L~~L~~L~L~~n~l~~lP~-~i~~L~~L~~L~l~~~ 253 (2123)
.++++++ .++.+|. |..+.+|++|+|++ |.++ .+ ..|++|.+|++|+|++|+++.+|. .|++|++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4577777 7888888 88888888888885 8888 33 678888888888888888887755 5788888888888888
Q ss_pred CCCcccChhhhCCCCCCCEEEccCcccc
Q 000128 254 MKLKVIRPNVISSLSRLEELYMGNSFTE 281 (2123)
Q Consensus 254 ~~l~~lp~~~i~~L~~L~~L~l~~n~~~ 281 (2123)
. +..+|++.+..+. |++|++.+|.+.
T Consensus 91 ~-l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 A-LESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp C-CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred c-cceeCHHHcccCC-ceEEEeeCCCcc
Confidence 7 7788877555555 888888887765
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.40 E-value=6.3e-07 Score=109.85 Aligned_cols=101 Identities=11% Similarity=0.156 Sum_probs=69.5
Q ss_pred CCceEEEccCCCCc-cCCCCCC-CCCceEEEeecCcCCC-------------------ccchhHhhC--------CCCcc
Q 000128 128 KDPTAISIPFRGIY-EFPERLE-CPKLKLFVLFSENLSL-------------------RIPDLFFEG--------MTELR 178 (2123)
Q Consensus 128 ~~l~~L~l~~n~~~-~lp~~~~-~~~Lr~L~l~~n~~~~-------------------~~p~~~~~~--------l~~Lr 178 (2123)
.++++|.+.++--. .+..... +++|++|++++|.+.. .+|...|.+ +++|+
T Consensus 25 ~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~ 104 (329)
T 3sb4_A 25 NSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLE 104 (329)
T ss_dssp HHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCC
T ss_pred CceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCc
Confidence 46788888764111 1111112 7899999999998761 356666777 88888
Q ss_pred EEEeecCCCCCCCc-ccCCCCCccEEEcCCCCCC--CCccccCCCCCcEEEccC
Q 000128 179 VLSFTGFRFPSLPS-SIGCLISLRTLTLESCLLG--DVATIGDLKKLEILSLRH 229 (2123)
Q Consensus 179 ~L~L~~n~i~~lp~-~i~~L~~Lr~L~L~~~~l~--~p~~i~~L~~L~~L~L~~ 229 (2123)
.+++.+ .++.+++ +|..+.+|+.+++.+|.+. .+..|....++.++....
T Consensus 105 ~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 105 KVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp C-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred EEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 888888 7777754 5778888888888888876 346677777777776554
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.36 E-value=4.7e-08 Score=121.18 Aligned_cols=153 Identities=14% Similarity=0.032 Sum_probs=90.2
Q ss_pred CCCceEEEccCCCCccCC-----CCC--CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCC-----Cccc
Q 000128 127 HKDPTAISIPFRGIYEFP-----ERL--ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSL-----PSSI 194 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp-----~~~--~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~l-----p~~i 194 (2123)
.+.++.|++++|.+.... ..+ ..++|++|++++|.+.......+...+++|+.|+|++|.++.. ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 357888888888776221 111 2357888888887765433344444556777777777777522 1122
Q ss_pred -CCCCCccEEEcCCCCCCC------CccccCCCCCcEEEccCCCCcc-----cccccCCCCCccEEeccCCCCCccc---
Q 000128 195 -GCLISLRTLTLESCLLGD------VATIGDLKKLEILSLRHSDVEE-----LPGEIGQLTRLKLLDLSNCMKLKVI--- 259 (2123)
Q Consensus 195 -~~L~~Lr~L~L~~~~l~~------p~~i~~L~~L~~L~L~~n~l~~-----lP~~i~~L~~L~~L~l~~~~~l~~l--- 259 (2123)
....+|++|+|++|.++. +..+...++|++|+|++|.+.. ++..+...++|++|++++|. ++..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHH
Confidence 235667777777777651 1334556667777777776652 34455566667777777666 4422
Q ss_pred --ChhhhCCCCCCCEEEccCcccc
Q 000128 260 --RPNVISSLSRLEELYMGNSFTE 281 (2123)
Q Consensus 260 --p~~~i~~L~~L~~L~l~~n~~~ 281 (2123)
+.. +...++|++|++++|.+.
T Consensus 230 ~l~~~-L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 230 ALARA-AREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHH-HHHCSSCCEEECTTSSCC
T ss_pred HHHHH-HHhCCCCCEEeccCCCCC
Confidence 111 334566666666666654
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.36 E-value=4.5e-08 Score=121.30 Aligned_cols=162 Identities=15% Similarity=0.135 Sum_probs=116.7
Q ss_pred CCCceEEEeecCcCCCccchhH---hh-CCCCccEEEeecCCCCC--CCcccCCCCCccEEEcCCCCCC--CCccc----
Q 000128 149 CPKLKLFVLFSENLSLRIPDLF---FE-GMTELRVLSFTGFRFPS--LPSSIGCLISLRTLTLESCLLG--DVATI---- 216 (2123)
Q Consensus 149 ~~~Lr~L~l~~n~~~~~~p~~~---~~-~l~~Lr~L~L~~n~i~~--lp~~i~~L~~Lr~L~L~~~~l~--~p~~i---- 216 (2123)
++.|+.|++++|.+.......+ +. ..++|++|+|++|.++. +..-...+.+|++|+|++|.++ ....+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 5678999999998864322222 12 33799999999999873 2222234568999999999987 22333
Q ss_pred -cCCCCCcEEEccCCCCcc-----cccccCCCCCccEEeccCCCCCccc-----ChhhhCCCCCCCEEEccCcccccccc
Q 000128 217 -GDLKKLEILSLRHSDVEE-----LPGEIGQLTRLKLLDLSNCMKLKVI-----RPNVISSLSRLEELYMGNSFTEWEIE 285 (2123)
Q Consensus 217 -~~L~~L~~L~L~~n~l~~-----lP~~i~~L~~L~~L~l~~~~~l~~l-----p~~~i~~L~~L~~L~l~~n~~~~~~~ 285 (2123)
....+|++|++++|.++. ++..+..+++|++|++++|. ++.. +.. +...++|++|++++|.+...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~-L~~~~~L~~L~Ls~N~i~~~-- 226 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQ-LDRNRQLQELNVAYNGAGDT-- 226 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHH-GGGCSCCCEEECCSSCCCHH--
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHH-HhcCCCcCeEECCCCCCCHH--
Confidence 346789999999998873 56667888999999999998 6542 333 67788999999999988621
Q ss_pred cccccChhhhCCCCCCCEEEEecCCCCCCC
Q 000128 286 GQSNASLVELKQLSRLTTLEVHIPDAQVMP 315 (2123)
Q Consensus 286 ~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 315 (2123)
........+...++|++|+++.|.++...
T Consensus 227 -g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g 255 (372)
T 3un9_A 227 -AALALARAAREHPSLELLHLYFNELSSEG 255 (372)
T ss_dssp -HHHHHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred -HHHHHHHHHHhCCCCCEEeccCCCCCHHH
Confidence 11123455667789999999999876543
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.24 E-value=1.9e-06 Score=106.69 Aligned_cols=97 Identities=22% Similarity=0.167 Sum_probs=75.5
Q ss_pred EEeecC-cCCCccchhHhhCCCCccEEEeec-CCCCCCC-cccCCCCCccEEEcCCCCCC--CCccccCCCCCcEEEccC
Q 000128 155 FVLFSE-NLSLRIPDLFFEGMTELRVLSFTG-FRFPSLP-SSIGCLISLRTLTLESCLLG--DVATIGDLKKLEILSLRH 229 (2123)
Q Consensus 155 L~l~~n-~~~~~~p~~~~~~l~~Lr~L~L~~-n~i~~lp-~~i~~L~~Lr~L~L~~~~l~--~p~~i~~L~~L~~L~L~~ 229 (2123)
++++++ .+. .+|. +..+++|++|+|++ |.++.+| ..|+.|.+|++|+|++|.|+ .+..|++|.+|++|+|++
T Consensus 13 v~~~~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp EECCSSCCCT-TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEcCCCCCCC-ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 456665 554 5776 47788888888885 8888776 56888888888888888888 346788888999999999
Q ss_pred CCCcccccccCCCCCccEEeccCCC
Q 000128 230 SDVEELPGEIGQLTRLKLLDLSNCM 254 (2123)
Q Consensus 230 n~l~~lP~~i~~L~~L~~L~l~~~~ 254 (2123)
|+++.+|..+.....|+.|++.+|.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred CccceeCHHHcccCCceEEEeeCCC
Confidence 9888888765554459999998887
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.11 E-value=2.6e-05 Score=97.53 Aligned_cols=230 Identities=14% Similarity=0.138 Sum_probs=99.3
Q ss_pred CceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCC-cccCCCCCccEEEcCCCCCC-CC-ccccCCCCCcEEEc
Q 000128 151 KLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLP-SSIGCLISLRTLTLESCLLG-DV-ATIGDLKKLEILSL 227 (2123)
Q Consensus 151 ~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp-~~i~~L~~Lr~L~L~~~~l~-~p-~~i~~L~~L~~L~L 227 (2123)
+|+.+.+..+ +. .++...|.+. .|+.+.+.. .++.++ .+|.++.+|+.+++..|.++ .+ ..|. ..+|+.+.+
T Consensus 136 ~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLL 210 (401)
T ss_dssp CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEEC
T ss_pred CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEe
Confidence 4555555433 22 3444444442 355555543 344332 34445555555555555544 22 2222 345555555
Q ss_pred cCCCCccccc-ccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccccccccccccChhhhCCCCCCCEEEE
Q 000128 228 RHSDVEELPG-EIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEV 306 (2123)
Q Consensus 228 ~~n~l~~lP~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l 306 (2123)
.. .++.++. .|.++.+|+.+++..+ +..++..+|.+ .+|+.+.+.++ +. ......+.++++|+.+.+
T Consensus 211 p~-~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~-i~-------~I~~~aF~~c~~L~~l~l 278 (401)
T 4fdw_A 211 PV-TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNG-VT-------NIASRAFYYCPELAEVTT 278 (401)
T ss_dssp CT-TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETT-CC-------EECTTTTTTCTTCCEEEE
T ss_pred CC-chheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCC-cc-------EEChhHhhCCCCCCEEEe
Confidence 42 2444432 2444455555555432 34444444444 44555544322 11 011233444455555554
Q ss_pred ecCCCC-----CCChhh--hccccceeeeccCC---ccCCCCCcccceeeecccccCccccchhHHHhccCCcEEecccc
Q 000128 307 HIPDAQ-----VMPQDL--LSVELERYRICIGD---VWSWSGEHETSRRLKLSALNKCIYLGYGMQMLLKGIEDLYLDEL 376 (2123)
Q Consensus 307 ~~~~~~-----~~~~~~--~~~~L~~l~i~~~~---~~~~~~~~~~L~~L~L~~~~~~~~~p~~i~~~l~~L~~L~L~~~ 376 (2123)
..+... .++..+ ...+|+.+.+..+- ....+..+.+|+.+.+.. ....++......+ +|+.+.+.++
T Consensus 279 ~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 279 YGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp ESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS
T ss_pred CCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC
Confidence 443322 222222 12334443332110 011223344556665542 1222333333335 8888988874
Q ss_pred cCccccccccCCCCCCC-CccEEEeecc
Q 000128 377 NGFQNALLELEDGEVFP-LLKHLHVQNV 403 (2123)
Q Consensus 377 ~~~~~~~~~l~~~~~l~-~L~~L~L~~~ 403 (2123)
... ..... .+.+++ +++.|++..+
T Consensus 356 ~~~-~l~~~--~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 356 TPP-QVFEK--VWYGFPDDITVIRVPAE 380 (401)
T ss_dssp SCC-BCCCS--SCCCSCTTCCEEEECGG
T ss_pred CCc-ccccc--cccCCCCCccEEEeCHH
Confidence 322 11111 234553 6788888765
No 149
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.09 E-value=3.7e-06 Score=112.17 Aligned_cols=86 Identities=13% Similarity=0.150 Sum_probs=73.5
Q ss_pred hhHHHHHHHhHhcCCCchhhHHHHhcccCCCCCccChhHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHcCCcccCC
Q 000128 6 ANVNSIIELSYNFLESEEAKSLFRLCGLLNGGSQIPIDALMRCGMGLGLLKGVYTLQEARKRVHMLVNFLKASRLLLDGD 85 (2123)
Q Consensus 6 ~~i~~~L~lSY~~Lp~~~lK~cFlyca~Fp~d~~i~~~~Li~~WiaeGfi~~~~~~~~~~~~~~~~i~~L~~rsll~~~~ 85 (2123)
..|..++..||+.||++ .|.||++||+||+|+.|+.+.++.+|.+++ +.+.+++++|++++|++...
T Consensus 362 ~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~~------------~~~~~~l~~L~~~~Ll~~~~ 428 (591)
T 1z6t_A 362 EALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDMET------------EEVEDILQEFVNKSLLFCDR 428 (591)
T ss_dssp HHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCCH------------HHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHHHHHHHHhCCHH-HHHHHHHccccCCCCccCHHHHHHHhccCH------------HHHHHHHHHHHhCcCeEEec
Confidence 57899999999999996 999999999999999999999999997541 23567899999999997433
Q ss_pred --CcCeEEechhHHHHHHHHH
Q 000128 86 --AEECLKMHDIIHSIAASVA 104 (2123)
Q Consensus 86 --~~~~~~mHDlv~dla~~i~ 104 (2123)
....|+|||++|++++...
T Consensus 429 ~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 429 NGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp ETTEEEEECCHHHHHHHHHHT
T ss_pred CCCccEEEEcHHHHHHHHhhh
Confidence 2347999999999998874
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.97 E-value=5.9e-05 Score=94.26 Aligned_cols=185 Identities=11% Similarity=0.162 Sum_probs=106.3
Q ss_pred CceEEEccCCCCccCCCCC--CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCC-cccCCCCCccEEEc
Q 000128 129 DPTAISIPFRGIYEFPERL--ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLP-SSIGCLISLRTLTL 205 (2123)
Q Consensus 129 ~l~~L~l~~n~~~~lp~~~--~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp-~~i~~L~~Lr~L~L 205 (2123)
+++.+.+.. .+..++... +|++|+.+++..|.+. .++...|. ...|+.+.+..+ ++.++ .+|.++.+|+.+.+
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence 466666664 455555443 6777888887776665 56666665 467777777643 55554 45667777777777
Q ss_pred CCCCCC--CCccccCCCCCcEEEccCCCCccccc-ccCCCCCccEEeccCCCCCc-----ccChhhhCCCCCCCEEEccC
Q 000128 206 ESCLLG--DVATIGDLKKLEILSLRHSDVEELPG-EIGQLTRLKLLDLSNCMKLK-----VIRPNVISSLSRLEELYMGN 277 (2123)
Q Consensus 206 ~~~~l~--~p~~i~~L~~L~~L~L~~n~l~~lP~-~i~~L~~L~~L~l~~~~~l~-----~lp~~~i~~L~~L~~L~l~~ 277 (2123)
..+ ++ ....|.+ .+|+.+.+. +.++.++. .|.++++|+.+++.++. .. .++...|..+++|+.+.+.+
T Consensus 234 ~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~-~~~~~~~~I~~~aF~~c~~L~~l~l~~ 309 (401)
T 4fdw_A 234 PEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGST-FNDDPEAMIHPYCLEGCPKLARFEIPE 309 (401)
T ss_dssp CTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSC-CCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred CCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCcc-ccCCcccEECHHHhhCCccCCeEEeCC
Confidence 654 33 2244444 566676663 34555533 46666677777666554 22 46666666677777776653
Q ss_pred cccccccccccccChhhhCCCCCCCEEEEecCCCCCCChhhhc-cccceeeecc
Q 000128 278 SFTEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQVMPQDLLS-VELERYRICI 330 (2123)
Q Consensus 278 n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~-~~L~~l~i~~ 330 (2123)
+ +. ......+.++++|+.+.+.. .+..++..++. .+|+.+.+..
T Consensus 310 ~-i~-------~I~~~aF~~c~~L~~l~lp~-~l~~I~~~aF~~~~L~~l~l~~ 354 (401)
T 4fdw_A 310 S-IR-------ILGQGLLGGNRKVTQLTIPA-NVTQINFSAFNNTGIKEVKVEG 354 (401)
T ss_dssp T-CC-------EECTTTTTTCCSCCEEEECT-TCCEECTTSSSSSCCCEEEECC
T ss_pred c-eE-------EEhhhhhcCCCCccEEEECc-cccEEcHHhCCCCCCCEEEEcC
Confidence 2 22 11234456666666666633 34445444421 1555555543
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.79 E-value=1e-05 Score=86.46 Aligned_cols=88 Identities=8% Similarity=0.197 Sum_probs=61.1
Q ss_pred CccEEEcccCCCcchhhhccchhhhhcccccEEEeccccccccc-cCcccc----cccccEEeeccCCCcccccchhhHH
Q 000128 859 GLKELELNKLPNLLHLWKENSQLSKALLNLATLEISECDKLEKL-VPSSVS----LENLVTLEVSKCNELIHLMTLSTAE 933 (2123)
Q Consensus 859 ~L~~L~l~~~~~l~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~----l~~L~~L~l~~c~~l~~l~~~~~~~ 933 (2123)
+|+.|++++|. + .+.+++++..|++|++|++++|..+++- -..+.. .++|++|+|++|++|++-.-..+ .
T Consensus 62 ~L~~LDLs~~~-I---td~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~ 136 (176)
T 3e4g_A 62 KIQAIDATDSC-I---MSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-H 136 (176)
T ss_dssp CEEEEEEESCC-C---CGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-G
T ss_pred eEeEEeCcCCC-c---cHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-h
Confidence 67888888884 4 4467777777888888888888877663 111222 34688888888888887765543 4
Q ss_pred HhhhcceeEEcccccchh
Q 000128 934 SLVKLNRMNVIDCKMLQQ 951 (2123)
Q Consensus 934 ~l~~L~~L~i~~C~~l~~ 951 (2123)
++++|+.|++++|+.+..
T Consensus 137 ~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GCTTCCEEEEESCTTCCC
T ss_pred cCCCCCEEECCCCCCCCc
Confidence 577788888888876643
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.60 E-value=3.9e-05 Score=94.00 Aligned_cols=179 Identities=17% Similarity=0.150 Sum_probs=114.5
Q ss_pred CCCceEEEccCCCCcc---------CCCCC-CCCCceEEEeecCcCC---------CccchhHhhCCCCccEEEeecCCC
Q 000128 127 HKDPTAISIPFRGIYE---------FPERL-ECPKLKLFVLFSENLS---------LRIPDLFFEGMTELRVLSFTGFRF 187 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~---------lp~~~-~~~~Lr~L~l~~n~~~---------~~~p~~~~~~l~~Lr~L~L~~n~i 187 (2123)
..+++.|.+....... +.... .+++|+.|.+...... +.+ ..++..+++|+.|+++++.-
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L-~~ll~~~P~L~~L~L~g~~~ 184 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDL-SPVLDAMPLLNNLKIKGTNN 184 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBC-HHHHHTCTTCCEEEEECCBT
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCH-HHHHhcCCCCcEEEEeCCCC
Confidence 3467778777554321 11112 5789999998654321 112 34568899999999998842
Q ss_pred CCCCcccCCCCCccEEEcCCCCCC--CCcccc--CCCCCcEEEccCC--C------Cccccccc--CCCCCccEEeccCC
Q 000128 188 PSLPSSIGCLISLRTLTLESCLLG--DVATIG--DLKKLEILSLRHS--D------VEELPGEI--GQLTRLKLLDLSNC 253 (2123)
Q Consensus 188 ~~lp~~i~~L~~Lr~L~L~~~~l~--~p~~i~--~L~~L~~L~L~~n--~------l~~lP~~i--~~L~~L~~L~l~~~ 253 (2123)
..+|. +. +.+|+.|++..+.+. ....++ .+++|++|+|+.+ . +..+...+ +.+++|++|++++|
T Consensus 185 l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~ 262 (362)
T 2ra8_A 185 LSIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA 262 (362)
T ss_dssp CBCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred ceecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence 34554 43 789999999998887 334444 7899999998531 1 22222222 35789999999988
Q ss_pred CCCcc-cChhhh--CCCCCCCEEEccCcccccccccccccChhhhCCCCCCCEEEEecCCCC
Q 000128 254 MKLKV-IRPNVI--SSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQ 312 (2123)
Q Consensus 254 ~~l~~-lp~~~i--~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 312 (2123)
. +.. .+..+. ..+++|++|+++.|.+...- .......+.++++|+.|+++.|.++
T Consensus 263 ~-i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G---~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 263 E-EQNVVVEMFLESDILPQLETMDISAGVLTDEG---ARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp T-THHHHHHHHHHCSSGGGCSEEECCSSCCBHHH---HHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred C-CchHHHHHHHhCccCCCCCEEECCCCCCChHH---HHHHHhhcccCCcceEEECCCCcCC
Confidence 7 432 222211 35789999999998876210 1112334456789999999887654
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.47 E-value=0.00012 Score=78.42 Aligned_cols=63 Identities=10% Similarity=0.189 Sum_probs=43.9
Q ss_pred ccccEEEecccccccc-ccCcccccccccEEeeccCCCcccccchhhHH---HhhhcceeEEcccccc
Q 000128 886 LNLATLEISECDKLEK-LVPSSVSLENLVTLEVSKCNELIHLMTLSTAE---SLVKLNRMNVIDCKML 949 (2123)
Q Consensus 886 ~~L~~L~l~~c~~l~~-lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~---~l~~L~~L~i~~C~~l 949 (2123)
..|++|++++|. +++ -...+..+++|++|++++|.++++-.-..+.. ..++|++|++++|+.+
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~I 127 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNV 127 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTC
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcC
Confidence 368889999987 443 23345678889999999998888765444333 1346777777777765
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.43 E-value=0.0021 Score=80.47 Aligned_cols=123 Identities=15% Similarity=0.248 Sum_probs=55.6
Q ss_pred CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCCC-cccCCCCCccEEEcCCCCCC-CCccccCCCCCcEE
Q 000128 148 ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLP-SSIGCLISLRTLTLESCLLG-DVATIGDLKKLEIL 225 (2123)
Q Consensus 148 ~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~lp-~~i~~L~~Lr~L~L~~~~l~-~p~~i~~L~~L~~L 225 (2123)
++.+|+.+.+..+ +. .+....|.++.+|+.+++..+ ++.++ .+|..+..|+.+.+..+-.. ....|.+...+...
T Consensus 69 ~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~ 145 (394)
T 4fs7_A 69 GCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEIT 145 (394)
T ss_dssp TCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEE
T ss_pred CCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccc
Confidence 5566666666432 32 455555666666666666543 44333 24455555555444332111 12233333222222
Q ss_pred EccCCCCcccc-cccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccC
Q 000128 226 SLRHSDVEELP-GEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGN 277 (2123)
Q Consensus 226 ~L~~n~l~~lP-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~ 277 (2123)
... .+..+. ..+.++.+|+.+.+.++ +..++.+.+....+|+.+.+..
T Consensus 146 ~~~--~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 146 IPE--GVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp CCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCT
T ss_pred cCc--cccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCC
Confidence 111 111121 23455555555555433 3445555555555555555543
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.36 E-value=0.0027 Score=79.58 Aligned_cols=300 Identities=16% Similarity=0.148 Sum_probs=170.3
Q ss_pred CCCceEEEccCCCCccCCCCC--CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCCC-CcccCCCCCccEE
Q 000128 127 HKDPTAISIPFRGIYEFPERL--ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSL-PSSIGCLISLRTL 203 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~lp~~~--~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~l-p~~i~~L~~Lr~L 203 (2123)
..+++.+.+.. .+..++... +|++|+.+.+..+ +. .++...|.++..|+.+.+..+ +..+ ..+|.....+...
T Consensus 70 c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~ 145 (394)
T 4fs7_A 70 CRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEIT 145 (394)
T ss_dssp CTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEE
T ss_pred CCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceeeecccccccc
Confidence 46789999874 477776654 7899999999754 33 577777899999998776654 3333 2345555444433
Q ss_pred EcCCCCCCCCccccCCCCCcEEEccCCCCccccc-ccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCccccc
Q 000128 204 TLESCLLGDVATIGDLKKLEILSLRHSDVEELPG-EIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEW 282 (2123)
Q Consensus 204 ~L~~~~l~~p~~i~~L~~L~~L~L~~n~l~~lP~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~ 282 (2123)
.......-....|.++.+|+.+.+..+ +..++. .+..+.+|+.+.+..+ +..++...+.+...|+.+.+..+...
T Consensus 146 ~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~~~- 221 (394)
T 4fs7_A 146 IPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSLYY- 221 (394)
T ss_dssp CCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTCCE-
T ss_pred cCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCceE-
Confidence 322221113467888999999999765 445544 4778889999988765 67788777888888888876654322
Q ss_pred ccccccccChhhhCCCCCCCEEEEecCCCCCCChhh--hccccceeeeccCCccCCCCCcccceeeecccccCccccchh
Q 000128 283 EIEGQSNASLVELKQLSRLTTLEVHIPDAQVMPQDL--LSVELERYRICIGDVWSWSGEHETSRRLKLSALNKCIYLGYG 360 (2123)
Q Consensus 283 ~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~p~~ 360 (2123)
+ ........+|+.+.+.. .+..+...+ ....++... +... ...++..
T Consensus 222 -i-------~~~~~~~~~l~~i~ip~-~~~~i~~~~f~~~~~l~~~~--------------------~~~~--~~~i~~~ 270 (394)
T 4fs7_A 222 -L-------GDFALSKTGVKNIIIPD-SFTELGKSVFYGCTDLESIS--------------------IQNN--KLRIGGS 270 (394)
T ss_dssp -E-------CTTTTTTCCCCEEEECT-TCCEECSSTTTTCSSCCEEE--------------------ECCT--TCEECSC
T ss_pred -e-------ehhhcccCCCceEEECC-CceecccccccccccceeEE--------------------cCCC--cceeecc
Confidence 0 11122335677766642 222222222 112232222 2210 0111111
Q ss_pred HHHhccCCcEEecccccCccccccccCCCCCCCCccEEEeeccCCccEeeccccccCCCcCcccceeeccccccchhhhc
Q 000128 361 MQMLLKGIEDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLFLHNLMRLEMVYR 440 (2123)
Q Consensus 361 i~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~ 440 (2123)
.......++....... .++.. .+....+|+.+.+.++ ++.++.. ....+.+|+.+.+.+ +++.+..
T Consensus 271 ~F~~~~~l~~~~~~~~-----~i~~~-~F~~~~~L~~i~l~~~--i~~I~~~----aF~~c~~L~~i~lp~--~v~~I~~ 336 (394)
T 4fs7_A 271 LFYNCSGLKKVIYGSV-----IVPEK-TFYGCSSLTEVKLLDS--VKFIGEE----AFESCTSLVSIDLPY--LVEEIGK 336 (394)
T ss_dssp TTTTCTTCCEEEECSS-----EECTT-TTTTCTTCCEEEECTT--CCEECTT----TTTTCTTCCEECCCT--TCCEECT
T ss_pred ccccccccceeccCce-----eeccc-cccccccccccccccc--cceechh----hhcCCCCCCEEEeCC--cccEEhH
Confidence 1122344554444331 12222 3456777887777543 4555431 223445677776642 2333321
Q ss_pred CCCCcccCCCccEEEEecCCCCCCCCChhhhhhcCCCcEEEecc
Q 000128 441 GQLTEHSFSKLRIIKVCQCDNLKHLFSFPMARNLLQLQKLKVSF 484 (2123)
Q Consensus 441 ~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~~~L~~L~~L~l~~ 484 (2123)
.. ...+.+|+.+.+.. +++.+.. ..+.++++|+.+++..
T Consensus 337 ~a--F~~c~~L~~i~lp~--~l~~I~~-~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 337 RS--FRGCTSLSNINFPL--SLRKIGA-NAFQGCINLKKVELPK 375 (394)
T ss_dssp TT--TTTCTTCCEECCCT--TCCEECT-TTBTTCTTCCEEEEEG
T ss_pred Hh--ccCCCCCCEEEECc--cccEehH-HHhhCCCCCCEEEECC
Confidence 11 12346677777753 4666655 4567888899888864
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.35 E-value=7.5e-05 Score=82.39 Aligned_cols=84 Identities=11% Similarity=0.133 Sum_probs=46.8
Q ss_pred hhCCCCccEEEeecC-CCC-----CCCcccCCCCCccEEEcCCCCCCC------CccccCCCCCcEEEccCCCCcc----
Q 000128 171 FEGMTELRVLSFTGF-RFP-----SLPSSIGCLISLRTLTLESCLLGD------VATIGDLKKLEILSLRHSDVEE---- 234 (2123)
Q Consensus 171 ~~~l~~Lr~L~L~~n-~i~-----~lp~~i~~L~~Lr~L~L~~~~l~~------p~~i~~L~~L~~L~L~~n~l~~---- 234 (2123)
+...+.|+.|+|++| .+. .+...+...++|++|+|++|.|.. ...+....+|++|+|++|.|..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 355666666666666 655 233445555666666666666651 1333444556666666666552
Q ss_pred -cccccCCCCCccEEec--cCCC
Q 000128 235 -LPGEIGQLTRLKLLDL--SNCM 254 (2123)
Q Consensus 235 -lP~~i~~L~~L~~L~l--~~~~ 254 (2123)
+...+...++|++|++ ++|.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSC
T ss_pred HHHHHHHhCCCceEEEecCCCCC
Confidence 3444555555666665 4444
No 157
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.14 E-value=0.00036 Score=85.36 Aligned_cols=149 Identities=15% Similarity=0.155 Sum_probs=100.3
Q ss_pred CCCceEEEccCCCCcc----------CCCCC-CCCCceEEEeecCcCCCccchhHhhCCCCccEEEeecCCCCC-CCccc
Q 000128 127 HKDPTAISIPFRGIYE----------FPERL-ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPS-LPSSI 194 (2123)
Q Consensus 127 ~~~l~~L~l~~n~~~~----------lp~~~-~~~~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~i~~-lp~~i 194 (2123)
+++++.|.+....... +...+ .+|+|+.|.+.+|... .++. + .+++|+.|++..+.++. ....+
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~--~~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K--PRPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C--BCTTCSEEEEECSBCCHHHHHHH
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c--cCCCCcEEEEecCCCChHHHHHH
Confidence 5689999987653321 11111 6799999999987422 3443 2 38899999999988752 11223
Q ss_pred --CCCCCccEEEcCCC--C------CCCC-ccc--cCCCCCcEEEccCCCCcc-ccccc---CCCCCccEEeccCCCCCc
Q 000128 195 --GCLISLRTLTLESC--L------LGDV-ATI--GDLKKLEILSLRHSDVEE-LPGEI---GQLTRLKLLDLSNCMKLK 257 (2123)
Q Consensus 195 --~~L~~Lr~L~L~~~--~------l~~p-~~i--~~L~~L~~L~L~~n~l~~-lP~~i---~~L~~L~~L~l~~~~~l~ 257 (2123)
..+++|++|+|+.+ . +..+ ..+ ..+++|++|++++|.+.. .+..+ ..+++|++|+++.|. ++
T Consensus 214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~ 292 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LT 292 (362)
T ss_dssp HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CB
T ss_pred HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CC
Confidence 37899999998532 1 1111 122 357899999999998762 22222 357899999999987 55
Q ss_pred c-----cChhhhCCCCCCCEEEccCcccc
Q 000128 258 V-----IRPNVISSLSRLEELYMGNSFTE 281 (2123)
Q Consensus 258 ~-----lp~~~i~~L~~L~~L~l~~n~~~ 281 (2123)
. ++.+ +.++++|+.|++++|.+.
T Consensus 293 d~G~~~L~~~-L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 293 DEGARLLLDH-VDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp HHHHHHHHTT-HHHHTTCSEEECCSBBCC
T ss_pred hHHHHHHHhh-cccCCcceEEECCCCcCC
Confidence 4 3333 456899999999999876
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.12 E-value=0.00014 Score=80.22 Aligned_cols=117 Identities=12% Similarity=0.056 Sum_probs=88.2
Q ss_pred CcccCCCCCccEEEcCCC-CCCC------CccccCCCCCcEEEccCCCCc-----ccccccCCCCCccEEeccCCCCCcc
Q 000128 191 PSSIGCLISLRTLTLESC-LLGD------VATIGDLKKLEILSLRHSDVE-----ELPGEIGQLTRLKLLDLSNCMKLKV 258 (2123)
Q Consensus 191 p~~i~~L~~Lr~L~L~~~-~l~~------p~~i~~L~~L~~L~L~~n~l~-----~lP~~i~~L~~L~~L~l~~~~~l~~ 258 (2123)
...+...++|++|+|++| .+.. ...+....+|++|+|++|.+. .+...+...++|++|++++|. ++.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~ 107 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISG 107 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCH
Confidence 345677899999999999 8871 256677889999999999987 345566777899999999998 554
Q ss_pred -----cChhhhCCCCCCCEEEc--cCcccccccccccccChhhhCCCCCCCEEEEecCCCC
Q 000128 259 -----IRPNVISSLSRLEELYM--GNSFTEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQ 312 (2123)
Q Consensus 259 -----lp~~~i~~L~~L~~L~l--~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 312 (2123)
+... +...++|++|++ ++|.+... ........+...+.|+.|+++.|.++
T Consensus 108 ~g~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~---g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILALVEA-LQSNTSLIELRIDNQSQPLGNN---VEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHG-GGGCSSCCEEECCCCSSCCCHH---HHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHH-HHhCCCceEEEecCCCCCCCHH---HHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3333 677789999999 78887621 11223455666789999999988764
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.73 E-value=0.00067 Score=78.45 Aligned_cols=60 Identities=27% Similarity=0.289 Sum_probs=26.7
Q ss_pred CCCCccEEEeecCCCCCCC---cccCCCCCccEEEcCCCCCCCCccccCCC--CCcEEEccCCCC
Q 000128 173 GMTELRVLSFTGFRFPSLP---SSIGCLISLRTLTLESCLLGDVATIGDLK--KLEILSLRHSDV 232 (2123)
Q Consensus 173 ~l~~Lr~L~L~~n~i~~lp---~~i~~L~~Lr~L~L~~~~l~~p~~i~~L~--~L~~L~L~~n~l 232 (2123)
.+++|+.|+|++|.|+.++ ..+..+++|++|+|++|.|+....+..+. +|++|++++|.+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl 232 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 232 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTT
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcC
Confidence 3455555555555554332 23334455555555555444322222222 444444444443
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.64 E-value=0.00069 Score=78.34 Aligned_cols=60 Identities=27% Similarity=0.389 Sum_probs=25.7
Q ss_pred CCCCcEEEccCCCCccc---ccccCCCCCccEEeccCCCCCcccChhhhCCCC--CCCEEEccCcccc
Q 000128 219 LKKLEILSLRHSDVEEL---PGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLS--RLEELYMGNSFTE 281 (2123)
Q Consensus 219 L~~L~~L~L~~n~l~~l---P~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~--~L~~L~l~~n~~~ 281 (2123)
+.+|++|+|++|+++.+ |..+..+++|++|+|++|. +..+.. +..++ +|++|++.+|.+.
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERE--LDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGG--GGGGTTSCCSEEECTTSTTG
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCchh--hhhcccCCcceEEccCCcCc
Confidence 34444444444444432 2233344455555554444 333311 22222 5555555555544
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.22 E-value=0.3 Score=60.75 Aligned_cols=143 Identities=11% Similarity=0.167 Sum_probs=78.3
Q ss_pred CceEEEeecCcCCCccchhHhhCCCCccEEEeecCC---CCCCC-cccCCCCCccEEEcCCCCCC--CCccccCCCCCcE
Q 000128 151 KLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFR---FPSLP-SSIGCLISLRTLTLESCLLG--DVATIGDLKKLEI 224 (2123)
Q Consensus 151 ~Lr~L~l~~n~~~~~~p~~~~~~l~~Lr~L~L~~n~---i~~lp-~~i~~L~~Lr~L~L~~~~l~--~p~~i~~L~~L~~ 224 (2123)
.|+.+.+..+ +. .+....|.++.+|+.+.+..+. ++.++ .+|..+.+|+.+.+..+ ++ ....+....+|+.
T Consensus 65 ~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 65 VLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDT 141 (394)
T ss_dssp CCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCE
T ss_pred cCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccc
Confidence 4666666543 32 4556666777777777776653 44443 34556666666555443 23 2245666677777
Q ss_pred EEccCCCCccccc-ccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccccccccccccChhhhCCCCCCCE
Q 000128 225 LSLRHSDVEELPG-EIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTT 303 (2123)
Q Consensus 225 L~L~~n~l~~lP~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~ 303 (2123)
+.+..+ +..++. .+....+|+.+.+..+ +..+...++.. .+|+.+.+..+... .....+.+...+..
T Consensus 142 i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~-~~l~~i~ip~~~~~--------i~~~af~~c~~l~~ 209 (394)
T 4gt6_A 142 VTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTG-TALTQIHIPAKVTR--------IGTNAFSECFALST 209 (394)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT-CCCSEEEECTTCCE--------ECTTTTTTCTTCCE
T ss_pred ccccce-eeeecccceecccccccccccce--eeEeccccccc-cceeEEEECCcccc--------cccchhhhccccce
Confidence 776543 333332 3556667777766543 45565554543 55666666543221 11234455556665
Q ss_pred EEEec
Q 000128 304 LEVHI 308 (2123)
Q Consensus 304 L~l~~ 308 (2123)
.....
T Consensus 210 ~~~~~ 214 (394)
T 4gt6_A 210 ITSDS 214 (394)
T ss_dssp EEECC
T ss_pred ecccc
Confidence 55443
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=93.67 E-value=0.19 Score=62.52 Aligned_cols=80 Identities=15% Similarity=0.273 Sum_probs=37.4
Q ss_pred cCCCCCccEEEcCCCCCC-CCccccCCCCCcEEEccCCCCcccccc-cCCCCCccEEeccCCCCCcccChhhhCCCCCCC
Q 000128 194 IGCLISLRTLTLESCLLG-DVATIGDLKKLEILSLRHSDVEELPGE-IGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLE 271 (2123)
Q Consensus 194 i~~L~~Lr~L~L~~~~l~-~p~~i~~L~~L~~L~L~~n~l~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~ 271 (2123)
|..+.+|+.+.+..+... ....+.+..+|+.+.+. +.++.++.. |..+.+|+.+++..+ +..+...+|.++++|+
T Consensus 261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCC
T ss_pred eeecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCC
Confidence 444455555555433322 22344455555555553 234444332 444555555555432 4445444455555555
Q ss_pred EEEcc
Q 000128 272 ELYMG 276 (2123)
Q Consensus 272 ~L~l~ 276 (2123)
.+.+.
T Consensus 338 ~i~ip 342 (394)
T 4gt6_A 338 RIAIP 342 (394)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 55553
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.69 E-value=0.14 Score=52.07 Aligned_cols=56 Identities=16% Similarity=0.249 Sum_probs=45.8
Q ss_pred cEEEccCCCCc--ccccccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccc
Q 000128 223 EILSLRHSDVE--ELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTE 281 (2123)
Q Consensus 223 ~~L~L~~n~l~--~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~ 281 (2123)
.+++-++++++ .+|..+. .+|++|+|++|. +..+|.++|..+++|++|++.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCee
Confidence 36778888888 8887654 478999999998 88899888888999999999888764
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=90.83 E-value=0.98 Score=55.63 Aligned_cols=127 Identities=13% Similarity=0.197 Sum_probs=76.5
Q ss_pred hHhhCCCCccEEEeecCCCCCC-CcccCCCCCccEEEcCCCCCC--CCccccCCCCCcEEEccCCCCccccc-ccCCCCC
Q 000128 169 LFFEGMTELRVLSFTGFRFPSL-PSSIGCLISLRTLTLESCLLG--DVATIGDLKKLEILSLRHSDVEELPG-EIGQLTR 244 (2123)
Q Consensus 169 ~~~~~l~~Lr~L~L~~n~i~~l-p~~i~~L~~Lr~L~L~~~~l~--~p~~i~~L~~L~~L~L~~n~l~~lP~-~i~~L~~ 244 (2123)
..|.....|+.+.+..+ +..+ ..++..+..|+.+.+..+ ++ ....+.+..+|+.+.+.. ++..++. .+..+.+
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTT
T ss_pred cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccc
Confidence 33456666777666544 3333 234566677777777554 33 235566677777777754 3555544 3666777
Q ss_pred ccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccccccccccccChhhhCCCCCCCEEEEe
Q 000128 245 LKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEVH 307 (2123)
Q Consensus 245 L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 307 (2123)
|+.+.+.++. +..++..+|.++++|+.+.+..+ +. ......+.++++|+.+.+.
T Consensus 288 L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-------~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 288 LTKVVMDNSA-IETLEPRVFMDCVKLSSVTLPTA-LK-------TIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CCEEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-------EECTTTTTTCTTCCCCCCC
T ss_pred cccccccccc-cceehhhhhcCCCCCCEEEcCcc-cc-------EEHHHHhhCCCCCCEEEEC
Confidence 7777776665 66777777777777777777543 22 0123456667777766553
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=89.77 E-value=0.34 Score=49.22 Aligned_cols=36 Identities=28% Similarity=0.351 Sum_probs=20.2
Q ss_pred CccEEEeecCCCCCCCc-ccCCCCCccEEEcCCCCCC
Q 000128 176 ELRVLSFTGFRFPSLPS-SIGCLISLRTLTLESCLLG 211 (2123)
Q Consensus 176 ~Lr~L~L~~n~i~~lp~-~i~~L~~Lr~L~L~~~~l~ 211 (2123)
+|++|+|++|.|+.+|. .|..+.+|++|+|++|.+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 45556666666665543 2445556666666666543
No 166
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=88.48 E-value=0.23 Score=54.02 Aligned_cols=62 Identities=18% Similarity=0.253 Sum_probs=29.0
Q ss_pred hCCCCccEEEeecC-CCC-----CCCcccCCCCCccEEEcCCCCCCCC------ccccCCCCCcEEEccCCCCc
Q 000128 172 EGMTELRVLSFTGF-RFP-----SLPSSIGCLISLRTLTLESCLLGDV------ATIGDLKKLEILSLRHSDVE 233 (2123)
Q Consensus 172 ~~l~~Lr~L~L~~n-~i~-----~lp~~i~~L~~Lr~L~L~~~~l~~p------~~i~~L~~L~~L~L~~n~l~ 233 (2123)
..-+.|+.|+|+++ .|. .+-+.+..-.+|+.|+|++|.|... ..+..=+.|++|+|++|.|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 34455555665553 443 1233344445556666665555411 22223344555555555444
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=87.79 E-value=1.9 Score=52.92 Aligned_cols=170 Identities=14% Similarity=0.096 Sum_probs=107.2
Q ss_pred CCCCceEEEeecCcCCCcc-----------chhHhhCCCCccEEEeecCCCCCCCcccCCCCCccEEEcCCCCCC-CCcc
Q 000128 148 ECPKLKLFVLFSENLSLRI-----------PDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLG-DVAT 215 (2123)
Q Consensus 148 ~~~~Lr~L~l~~n~~~~~~-----------p~~~~~~l~~Lr~L~L~~n~i~~lp~~i~~L~~Lr~L~L~~~~l~-~p~~ 215 (2123)
.+.++....+..+...... ....|.....+..+.+...........+....+|+.+.+..+--. ....
T Consensus 156 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~~~~i~~~~ 235 (379)
T 4h09_A 156 KAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSGVTTLGDGA 235 (379)
T ss_dssp TCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTTCCEECTTT
T ss_pred ccccccccccccccceeecccceecccccceeccccccccccccccccceeEEeecccccccccceeeeccceeEEcccc
Confidence 6777777776654322110 001123444455554444332233445667788888888655322 3467
Q ss_pred ccCCCCCcEEEccCCCCccccc-ccCCCCCccEEeccCCCCCcccChhhhCCCCCCCEEEccCcccccccccccccChhh
Q 000128 216 IGDLKKLEILSLRHSDVEELPG-EIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVE 294 (2123)
Q Consensus 216 i~~L~~L~~L~L~~n~l~~lP~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~ 294 (2123)
+.+..+|+.+.+..+ ++.++. .+.+..+|+.+.+..+ +..++..++..+++|+.+.+.++.+. ......
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~-------~I~~~a 305 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIE-------TLEPRV 305 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCC-------EECTTT
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccccc-------eehhhh
Confidence 778888999888765 666644 4677888998888653 67788888889999999988776554 112456
Q ss_pred hCCCCCCCEEEEecCCCCCCChhhh--ccccceeee
Q 000128 295 LKQLSRLTTLEVHIPDAQVMPQDLL--SVELERYRI 328 (2123)
Q Consensus 295 l~~L~~L~~L~l~~~~~~~~~~~~~--~~~L~~l~i 328 (2123)
+.++.+|+.+.+.. .+..+...++ ..+|+.+.+
T Consensus 306 F~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 306 FMDCVKLSSVTLPT-ALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTTCTTCCEEECCT-TCCEECTTTTTTCTTCCCCCC
T ss_pred hcCCCCCCEEEcCc-cccEEHHHHhhCCCCCCEEEE
Confidence 78888999888753 3666666553 356666554
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=86.52 E-value=0.31 Score=53.01 Aligned_cols=59 Identities=17% Similarity=0.129 Sum_probs=36.1
Q ss_pred hCCCCccEEEeecCCCC-----CCCcccCCCCCccEEEcCCCCCCC--C----ccccCCCCCcEEEccCC
Q 000128 172 EGMTELRVLSFTGFRFP-----SLPSSIGCLISLRTLTLESCLLGD--V----ATIGDLKKLEILSLRHS 230 (2123)
Q Consensus 172 ~~l~~Lr~L~L~~n~i~-----~lp~~i~~L~~Lr~L~L~~~~l~~--p----~~i~~L~~L~~L~L~~n 230 (2123)
..-+.|+.|+|++|.|. .+...+..-+.|++|+|++|.|+. . ..+..=..|++|+|+++
T Consensus 67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 55667777777777776 334445555678888888888771 1 33333344566666543
Done!