BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000129
(2114 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens
GN=SNRNP200 PE=1 SV=2
Length = 2136
Score = 2464 bits (6386), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1229/2167 (56%), Positives = 1598/2167 (73%), Gaps = 103/2167 (4%)
Query: 9 AEAHARFKQYEYRANSSLVLTTDSRPRDT---HEPTGEPESLWGKIDPRSFGDRAFRGRP 65
A+ AR QYEY+ANS+LVL D D EPTGE SL GK++ GD+A R +P
Sbjct: 2 ADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTKP 61
Query: 66 PELEEKLKKSAKKKKERDPDADAAAA----SEGT-------YQPKTKETRAAYEAMLSVI 114
+++E+ + +K+ E D + SEG Y+PKTKETR YE +LS I
Sbjct: 62 -QMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI 120
Query: 115 QQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVSIGKLIT 174
Q LG QP +I+ GAADE+LAVLKN+ +++ +++KEI+ LL + + LV++GK IT
Sbjct: 121 QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT 180
Query: 175 DYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEE----DEEEEEDV 230
DY GD + N +++D+ GV V+FE ++++ +E V+EE D E +E V
Sbjct: 181 DY--GGD---KEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVREEASDDDMEGDEAV 235
Query: 231 AEPNASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQCQKL 290
S + G + +++ L+ +DIDA+WLQR++S+ +D I QK
Sbjct: 236 VRCTLSANLVASGELM-------SSKKKDLHPRDIDAFWLQRQLSRFYDDAI---VSQKK 285
Query: 291 AEEVLKIL-AEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKK 349
A+EVL+IL DDRE EN+L+ L F+ F IK L ++R+ +++CT LA AQ + E+++
Sbjct: 286 ADEVLEILKTASDDRECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKER 345
Query: 350 IEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRDRRGLV 409
I +M P+L+ L QLH T E IREE R + S D +
Sbjct: 346 IMGKMEA-DPELSKFLYQLHETEK---------EDLIREERSRRERVRQSRMDTDLETM- 394
Query: 410 DRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKP 469
D D G L RQ+LDL+ L F QG FMAN++C LP+GS R KGYEE+HVPA+K KP
Sbjct: 395 DLDQGGEALAPRQVLDLEDLVFTQGSHFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKP 454
Query: 470 LDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAV 529
E+L+ + ++P++AQ F+G LNR+QS++Y++AL + +N+LLCAPTGAGKTNVA+
Sbjct: 455 FGSEEQLLPVEKLPKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVAL 514
Query: 530 LTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQT 589
+ +L+++ + N DG+ N ++KI+Y+APM++LV E+VG+ RL Y + V EL+GD
Sbjct: 515 MCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQ 574
Query: 590 LTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVAR 649
L +++I TQIIV TPEKWDIITRK G+RTYTQLV+L+I+DEIHLLHD+RGPVLE++VAR
Sbjct: 575 LCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVAR 634
Query: 650 TVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQV 709
+R IE T+E +RL+GLSATLPNYEDVA FLRV+ KGLFYFDNS+RPVPL Q Y+GI
Sbjct: 635 AIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITE 694
Query: 710 KKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKE 769
KK ++RFQ+MN++ YEK++ AGK+QVL+FVHSRKET KTARAIRD LE DTLG FL+E
Sbjct: 695 KKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLRE 754
Query: 770 DSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTAT 829
S S E+L++ + K+ +LKDLLPYGFAIHHAGMTR DR LVEDLF D H+QVLVSTAT
Sbjct: 755 GSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTAT 814
Query: 830 LAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889
LAWGVNLPAHTVIIKGTQ+Y+PEKG WTEL LDI+QMLGRAGRPQYD+ GEGI+IT H
Sbjct: 815 LAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHG 874
Query: 890 ELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPA 949
EL+YYLSL+NQQLPIESQ VSKL D LNAEIVLG VQNAK+A NW+GY YLYIRMLR+P
Sbjct: 875 ELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPT 934
Query: 950 LYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYIS 1009
LYG++ + LK D L +RR DLVHTAA +LD+NNLVKYD+K+G FQVT+LGRIAS+YYI+
Sbjct: 935 LYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYIT 994
Query: 1010 HGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEE 1069
+ T+ TYN+ LKPT+ +IEL R+FSLS EFK +TVR++EK+EL KLL+RVPIPVKES+EE
Sbjct: 995 NDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLERVPIPVKESIEE 1054
Query: 1070 PSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNL 1129
PSAKINVLLQA+ISQLKLEG +L +DMV++TQSAGRL+RA+FEIVL RGWAQL +K LNL
Sbjct: 1055 PSAKINVLLQAFISQLKLEGFALMADMVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNL 1114
Query: 1130 SKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTL 1189
KM+ KRMW PLRQF +P E++ K+EKK+F +ER YDL+ E+GELIR PKMG+T+
Sbjct: 1115 CKMIDKRMWQSMCPLRQFRKLPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTI 1174
Query: 1190 HKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYIL 1249
HK+VH FPKL L+ H+QPITR+ LKVELTITPDF WD+KVHG E FW++VED D E IL
Sbjct: 1175 HKYVHLFPKLELSVHLQPITRSTLKVELTITPDFQWDEKVHGSSEAFWILVEDVDSEVIL 1234
Query: 1250 HHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEK 1309
HHEYF+LK +Y +++H + F VP++EPLPPQYFIRVVSD+WL +T LPVSFRHLILPEK
Sbjct: 1235 HHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEK 1294
Query: 1310 YPPPTELLDLQPLPVTALRNPLYEALYQG-FKHFNPIQTQVFTVLYNTDDNVLVAAPTGS 1368
YPPPTELLDLQPLPV+ALRN +E+LYQ F FNPIQTQVF +YN+DDNV V APTGS
Sbjct: 1295 YPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGS 1354
Query: 1369 GKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGE 1428
GKTIC+EFAILR ++SE R VYI P+EALA++ Y DW KF L +VV LTGE
Sbjct: 1355 GKTICAEFAILRMLLQSSEG---RCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGE 1411
Query: 1429 TAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 1488
T+ DLKLL KG IIISTPEKWD LSRRWKQRK VQ ++LF++DE+HLIGG+ GPVLEVI
Sbjct: 1412 TSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVIC 1471
Query: 1489 SRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVD 1548
SRMRYI+SQ+E IRIVALS+SL+NAKD+ W+G ++ FNF P VRPVPLE+HIQG +
Sbjct: 1472 SRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFN 1531
Query: 1549 ITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAF 1608
I++ + R+ +M KP + AI +H+ +KP +VFVPSRK RLTA+D++T + D Q+ F
Sbjct: 1532 ISHTQTRLLSMAKPVYHAITKHSP-KKPVIVFVPSRKQTRLTAIDILTTCAADI-QRQRF 1589
Query: 1609 LLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSS 1668
L +++ P+++ + + LK TL +GVGYLHEGL+ ++ +V LF +G I+V V S S
Sbjct: 1590 LHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRS 1649
Query: 1669 MCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP 1728
+CWG+ + AHLV++M TQYY+G+ +A+ DYP+ D+LQM+GHA+RPL D+ G+CVI+C
Sbjct: 1650 LCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGS 1709
Query: 1729 RKEYYKKFL--------------------------------------------RLTQNPN 1744
+K+++KKFL R+TQNPN
Sbjct: 1710 KKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPN 1769
Query: 1745 YYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTI 1804
YYNLQG+SHRHLSDHLSELVE T+SDLE SKCI IE++MD++P N GMIA+YYYI+YTTI
Sbjct: 1770 YYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTI 1829
Query: 1805 ERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHV 1864
E FS SL KT+++GL+E++++A+EY +PIR E+ ++R+L NPKF DPHV
Sbjct: 1830 ELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHV 1889
Query: 1865 KANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMV 1924
K N LLQAH SR Q+ L+ D EE+L A RL+QA VDV+SSNGWLS AL AME++QMV
Sbjct: 1890 KTNLLLQAHLSRMQLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMV 1949
Query: 1925 TQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLD 1984
TQ MW +DS L QLPHF + KRC + K +E+VFD++EMED+ER LLQ++D Q+ D
Sbjct: 1950 TQAMWSKDSYLKQLPHFTSEHIKRCTD---KGVESVFDIMEMEDEERNALLQLTDSQIAD 2006
Query: 1985 IARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAKEEG 2044
+ARFCNR+PNI++S+EV D +++R+G + + V LER+ E GPV + +P+ +EEG
Sbjct: 2007 VARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLEREEEV---TGPVIAPLFPQKREEG 2063
Query: 2045 WWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCDSYMGCDQEYAF 2104
WW+V+GD K+N L++IKR++LQ+K++VKLDF APA G YTLYFM D+YMGCDQEY F
Sbjct: 2064 WWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPA-TGAHNYTLYFMSDAYMGCDQEYKF 2122
Query: 2105 TVDVKEA 2111
+VDVKEA
Sbjct: 2123 SVDVKEA 2129
>sp|Q9VUV9|U520_DROME Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
OS=Drosophila melanogaster GN=CG5931 PE=2 SV=4
Length = 2142
Score = 2440 bits (6323), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1214/2171 (55%), Positives = 1588/2171 (73%), Gaps = 101/2171 (4%)
Query: 9 AEAHARFKQYEYRANSSLVLTTD----SRPRDTHEPTGEPESLWGKIDPRSFGDRAFRGR 64
A+A AR QYEY+ANS+LVL D RPR E TGE SL GK+D GDR R +
Sbjct: 2 ADAAARQLQYEYKANSNLVLQADVRLIERPR-RDEATGEVCSLVGKLDGTRMGDRYQRTK 60
Query: 65 PPELEE-KLKKSAKKKKERDPD--ADAAAASEG-------TYQPKTKETRAAYEAMLSVI 114
P + EE K+K+ + + + D + A SEG Y+PKT+ETR YE +LS I
Sbjct: 61 PEKTEERKVKRQKRDEAQYDFERMKGATLLSEGIDEMVGIVYRPKTQETRQTYEVLLSFI 120
Query: 115 QQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVSIGKLIT 174
Q+ LG QP +I+ GAADEILAVLKND +K+ ++KK+I+ LL + + F LV++GK IT
Sbjct: 121 QEALGDQPRDILCGAADEILAVLKNDRLKDRERKKDIDSLLGAVTDERFALLVNLGKKIT 180
Query: 175 DYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDEEEEEDVAEPN 234
D+ A A N E +D+ G+ V+FEE+ EEESD DM E +++ +D E
Sbjct: 181 DFGSDAVNALTAAPNNEEQIDETYGINVQFEES---EEESDNDMYGEIRDDDAQDEGEEA 237
Query: 235 ASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEV 294
+ +++ + + + SL+ DIDAYWLQR +S+ + D Q A +V
Sbjct: 238 RIDHTLHAENLANEEAANNVKKERSLHPLDIDAYWLQRCLSKFYK---DAMVSQSKAADV 294
Query: 295 LKILAEG-DDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEE 353
LKIL + DDR+ EN+L+ L +D F IK L NR V++CT LA AQ ER++I E+
Sbjct: 295 LKILKDAADDRDCENQLVLLLGYDCFDFIKQLKLNRQMVLYCTMLASAQTDSERQRIREK 354
Query: 354 MMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRDRRGLVDRDA 413
M G LA IL QL ++ +E EAR S G+ A
Sbjct: 355 MRG-NSALAKILRQLDTGKSEDQEEG---------EAR------GSKRGKGDAEDGGAAA 398
Query: 414 DGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPN 473
G G RQLL+L+ +AF QG FMAN++C LP+GS R KGYEE+HVPA+K P D N
Sbjct: 399 AGQVAGVRQLLELEEMAFTQGSHFMANKRCQLPDGSYRKQRKGYEEVHVPALKPVPFDAN 458
Query: 474 EKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTIL 533
E+L + ++P++ QP F+G LNR+QSR+YK+AL S +N+LLCAPTGAGKTNVA+LT++
Sbjct: 459 EELQPVDKLPKYVQPVFEGFKTLNRIQSRLYKAALDSDENMLLCAPTGAGKTNVALLTMM 518
Query: 534 QQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ 593
+++ + N+DG+ N ++KI+YVAPMK+LV E+VGN RL Y++ V EL+GD LTR+
Sbjct: 519 REIGKHINEDGTINAQDFKIIYVAPMKSLVQEMVGNFGRRLACYNLTVSELTGDHQLTRE 578
Query: 594 QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQ 653
QI TQ+IV TPEKWDIITRK G+RT+ LV+L+IIDEIHLLHD RGPVLE++VART+R
Sbjct: 579 QIAATQVIVCTPEKWDIITRKGGERTFVSLVRLVIIDEIHLLHDERGPVLEALVARTIRN 638
Query: 654 IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713
IETT+E +RLVGLSATLPNY+DVA FLRV +KGLFYFDNSYRPV L QQYIG+ KK L
Sbjct: 639 IETTQEEVRLVGLSATLPNYQDVATFLRVKPDKGLFYFDNSYRPVSLEQQYIGVTEKKAL 698
Query: 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVS 773
+RFQ+MN++ YEK + AG++QVL+FVHSRKET KTARA+RD LE DTLG FLKE S S
Sbjct: 699 KRFQVMNEIVYEKTMEHAGRNQVLVFVHSRKETGKTARAVRDMCLEQDTLGSFLKEGSAS 758
Query: 774 REILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWG 833
E+L++ + VK+ +LK+LLPYGFAIHHAGMTR DR LVEDLF D H+QVLVSTATLAWG
Sbjct: 759 MEVLRTEAEQVKNTELKELLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWG 818
Query: 834 VNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRY 893
VNLPAHTVIIKGTQ+YNPEKG W ELS LD++QMLGRAGRPQYD+ GEGI+IT HSEL++
Sbjct: 819 VNLPAHTVIIKGTQVYNPEKGRWVELSALDVLQMLGRAGRPQYDTKGEGILITNHSELQF 878
Query: 894 YLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGL 953
YLSL+NQQLPIESQF+SKL D LNAEIVLGTVQ+ ++A NW+GYTYLYIRMLRNP LYG+
Sbjct: 879 YLSLLNQQLPIESQFISKLPDMLNAEIVLGTVQHLQDAVNWLGYTYLYIRMLRNPTLYGV 938
Query: 954 APEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTI 1013
+ + +K D L + RADL+HTAA L+R+ L+KYDRK+G+FQVTDLGRIAS+YY++H T+
Sbjct: 939 SHDAIKADPLLEQHRADLLHTAACCLERSGLIKYDRKTGHFQVTDLGRIASHYYLTHETM 998
Query: 1014 STYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAK 1073
TYN+ LK T+ +IEL R+FSLS EF++++VR++EK+EL KL++RVPIP+KES+EE SAK
Sbjct: 999 LTYNQLLKQTLSEIELFRVFSLSSEFRHISVREEEKLELQKLMERVPIPIKESIEEHSAK 1058
Query: 1074 INVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMV 1133
+NVLLQAYISQLKLEG +L SDMVFITQSA RL+RA+FEIVL RGWAQLA+K L L KM+
Sbjct: 1059 VNVLLQAYISQLKLEGFALMSDMVFITQSAARLMRAIFEIVLTRGWAQLADKTLTLCKMI 1118
Query: 1134 TKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFV 1193
+RMW TPLRQF +P+EI KLEKK F W R YDL P ELGELIR PK+G+T+HKFV
Sbjct: 1119 DRRMWQSMTPLRQFKKMPDEIAKKLEKKHFPWGRLYDLEPHELGELIRVPKLGKTIHKFV 1178
Query: 1194 HQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEY 1253
HQFPKL L+ H+QPITR L+VELTITPDF WD+KVHG E FWV++ED D E ILHHE+
Sbjct: 1179 HQFPKLELSTHIQPITRGTLRVELTITPDFQWDEKVHGQSEGFWVLIEDVDSELILHHEF 1238
Query: 1254 FMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPP 1313
F+LK++Y +++H L F VP++EPLPPQYF+R+VSD+W+G++T LPVSFRHLILPEK PP
Sbjct: 1239 FLLKQKYSQDEHQLKFFVPVFEPLPPQYFLRIVSDRWIGAETQLPVSFRHLILPEKNMPP 1298
Query: 1314 TELLDLQPLPVTALRNPLYEALY-QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTI 1372
TELLDLQPLP++ALR P +E+ Y Q F FNPIQTQVF +YN+D+NV V APTGSGK
Sbjct: 1299 TELLDLQPLPISALRQPKFESFYSQRFPQFNPIQTQVFNAVYNSDENVFVGAPTGSGKMT 1358
Query: 1373 CSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD 1432
+EFAI+R S+ R VY+ EALA + DW KFG L ++VV+LTGET D
Sbjct: 1359 IAEFAIMRLFTTQSDA---RCVYLVSEEALADLVFADWHSKFG-SLDIKVVKLTGETGTD 1414
Query: 1433 LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMR 1492
LKL+ KGQ++I+T +KWD LSRRWKQRK VQ V+LFI+DEL L+GG+ GPVLE++ SRMR
Sbjct: 1415 LKLIAKGQLVITTADKWDVLSRRWKQRKNVQLVNLFIVDELQLVGGEEGPVLEIVCSRMR 1474
Query: 1493 YIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNF 1552
YI+SQ+E +IRIVALS SL +A+D+ +W+G + FNF P VRP+PLE+HIQG ++T+
Sbjct: 1475 YISSQIEKQIRIVALSASLTDARDVAQWLGCNPNATFNFHPSVRPIPLELHIQGYNVTHN 1534
Query: 1553 EARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWP 1612
R+ M+KP + AI++++ + KP +VFV SRK RLTA+D++TY++ D Q + F
Sbjct: 1535 ATRIATMSKPVYNAILKYSAH-KPVIVFVSSRKQARLTAIDVLTYAASDL-QPNRFFHAE 1592
Query: 1613 AEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWG 1672
E+++PF++ + ++ LK TL GV YLHEGL+ +D +V LF++G ++V V+S +CWG
Sbjct: 1593 EEDIKPFLERMTDKTLKETLAQGVAYLHEGLSASDHRLVEQLFDSGAVQVAVISRDLCWG 1652
Query: 1673 VPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEY 1732
+ ++AHLV++M TQ+Y+G+ +++ DYP+TD+LQM+G A+RP D KCV++C + +K++
Sbjct: 1653 MSISAHLVIIMDTQFYNGKNHSYEDYPITDVLQMIGRANRPNEDADAKCVLMCQSSKKDF 1712
Query: 1733 YKKFL--------------------------------------------RLTQNPNYYNL 1748
+KKF+ RLTQNPNYYNL
Sbjct: 1713 FKKFINEPLPIESHLDHRMHDHFNAEVVTKTIENKQDAVDYLTWTFLYRRLTQNPNYYNL 1772
Query: 1749 QGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFS 1808
QGV+HRHLSDHLSELVENT+SDLE SKCI +E+DMD P N GMIA+YYYI+YTTIE FS
Sbjct: 1773 QGVTHRHLSDHLSELVENTLSDLEQSKCISVEDDMDTLPLNLGMIAAYYYINYTTIELFS 1832
Query: 1809 SSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHH--QRFSFEN---PKFTDPH 1863
SL KT+++GLLE+++SA+EY + +R EE+V+R L + + N PKF DPH
Sbjct: 1833 LSLNSKTKVRGLLEIISSAAEYEDVVVRHHEEQVLRTLSQRLPNKLTGPNETAPKFNDPH 1892
Query: 1864 VKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQM 1923
+K N LLQAH SR Q+G L+ D E++L A RL+QA VDV+SSNGWLS A+ AME++QM
Sbjct: 1893 IKTNLLLQAHLSRLQLGPELQGDTEQILSKAIRLIQACVDVLSSNGWLSPAVAAMELAQM 1952
Query: 1924 VTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLL 1983
VTQ MW +DS L QLPHF ++ KRC E K IETVFD++E+ED++R LLQ+SD+Q+
Sbjct: 1953 VTQAMWSKDSYLKQLPHFSPEIVKRCTE---KKIETVFDIMELEDEDRTRLLQLSDLQMA 2009
Query: 1984 DIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAKEE 2043
D+ARFCNR+PNI++++EV D + + +G + + V LER+ E GPV + +P+ +EE
Sbjct: 2010 DVARFCNRYPNIELNYEVVDKDRINSGSTVNVVVQLEREDEV---TGPVIAPFFPQKREE 2066
Query: 2044 GWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCDSYMGCDQEYA 2103
GWW+V+GD KTN LL+IKR++LQ+K++VKLDF AP+ GK YTLY+M DSY+GCDQEY
Sbjct: 2067 GWWVVIGDPKTNSLLSIKRLTLQQKAKVKLDFVAPS-PGKHDYTLYYMSDSYLGCDQEYK 2125
Query: 2104 FTVDVKEAGEE 2114
F+++V + E
Sbjct: 2126 FSIEVGDFQSE 2136
>sp|Q9U2G0|U520_CAEEL Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
OS=Caenorhabditis elegans GN=Y46G5A.4 PE=3 SV=1
Length = 2145
Score = 2165 bits (5609), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1084/2169 (49%), Positives = 1492/2169 (68%), Gaps = 103/2169 (4%)
Query: 9 AEAHARFKQYEYRANSSLVLTTD---SRPRDTHEPTGEPESLWGK-IDPRSFGDRAFRGR 64
A+ AR +QYEYR NS+LVL+ D + R EPTGE + K + GDRA +G+
Sbjct: 2 ADELARIQQYEYRQNSNLVLSVDYNLTDRRGREEPTGEVLPITDKEMRKMKMGDRAIKGK 61
Query: 65 PP-----ELEEKLKKSAKKKKERDPDADAAAASEGTYQPKTKETRAAYEAMLSVIQQQLG 119
P + +K ++ R+ D G Y+P+T+ET+ YE +LS I LG
Sbjct: 62 APVQDQKKKRKKKDDEKAQQFGRNVLVDNNELM-GAYKPRTQETKQTYEVILSFILDALG 120
Query: 120 GQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVSIGKLITDYQDA 179
P ++ GAADE+L LKND ++ +KKKE+E LL P+ + L+++ K I+D+
Sbjct: 121 DVPREVLCGAADEVLLTLKNDKFRDKEKKKEVEALLGPLTDDRIAVLINLSKKISDFS-- 178
Query: 180 GDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDEEEEEDV-----AEPN 234
+ G D+ ++ GV V+F D DEEE D MV E + EE+ + +
Sbjct: 179 --IEEENKPEGDGDIYENEGVNVQF---DSDEEEDDGGMVNEIKGDSEEESEEEEGVDTD 233
Query: 235 ASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEV 294
+ ++ G + +D++ G+ L+ +DIDA+W+QR +++ F DP Q+ EV
Sbjct: 234 YTATLKGDGHLTEDEQKA---RGI-LHPRDIDAHWIQRSLAKYFK---DPLIAQQKQTEV 286
Query: 295 LKILAEG-DDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEE 353
+ IL DDR+ EN+L+ L FD+F IK L +NRL +++CT L R +++ER +IE++
Sbjct: 287 IGILKNAADDRDAENQLVLLLGFDQFEFIKCLRQNRLMILYCT-LLRQANEKERLQIEDD 345
Query: 354 MMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRDRRGLVDRDA 413
M P+L IL L T + + +EKS R+ + K +A++ + +
Sbjct: 346 MRS-RPELHPILALLQETDEGSVVQ---VEKSKRDAEKSKKAATAAN---------EAIS 392
Query: 414 DGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPN 473
G W R++LDL+ L F QG M+N++C+LP+GS R K YEEIHVPA+K +P
Sbjct: 393 AGQWQAGRKMLDLNDLTFSQGSHLMSNKRCELPDGSYRRQKKSYEEIHVPALKPRPFAEG 452
Query: 474 EKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTIL 533
EKL+ +SE+P+WAQPAF G LNR+QSR+ SAL S +++LLCAPTGAGKTNVA+LT+L
Sbjct: 453 EKLVSVSELPKWAQPAFDGYKSLNRIQSRLCDSALRSKEHLLLCAPTGAGKTNVALLTML 512
Query: 534 QQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ 593
Q++ + +DGS +KIVY+APMK+LV E+VG+ S RL + + V E++GD ++++
Sbjct: 513 QEIGNHLAEDGSVKLDEFKIVYIAPMKSLVQEMVGSFSKRLAPFGITVGEMTGDAQMSKE 572
Query: 594 QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQ 653
Q TQ+IV TPEK+D++TRK G+R Y Q+V+LLIIDEIHLLHD+RGPVLESIV RT+RQ
Sbjct: 573 QFMATQVIVCTPEKYDVVTRKGGERAYNQMVRLLIIDEIHLLHDDRGPVLESIVVRTIRQ 632
Query: 654 IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713
+E + RLVGLSATLPNY+DVA FLRV E L +FDNSYRPVPL QQYIG+ KK L
Sbjct: 633 MEQNHDECRLVGLSATLPNYQDVATFLRVKPEH-LHFFDNSYRPVPLEQQYIGVTEKKAL 691
Query: 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVS 773
+RFQ MN++ Y+K++ AGK QVL+FVHSRKETAKTA+AIRD LE DTL F++E S S
Sbjct: 692 KRFQAMNEVVYDKIMEHAGKSQVLVFVHSRKETAKTAKAIRDACLEKDTLSAFMREGSAS 751
Query: 774 REILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWG 833
EIL++ + K+ DLKDLLPYGFAIHHAGM R DR LVEDLF D H+QVL STATLAWG
Sbjct: 752 TEILRTEAEQAKNLDLKDLLPYGFAIHHAGMNRVDRTLVEDLFADRHIQVLFSTATLAWG 811
Query: 834 VNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRY 893
VNLPAHTVIIKGTQIYNPEKG WTEL LDIMQMLGRAGRPQYD GEGI+IT HSEL+Y
Sbjct: 812 VNLPAHTVIIKGTQIYNPEKGRWTELGALDIMQMLGRAGRPQYDDRGEGILITNHSELQY 871
Query: 894 YLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGL 953
YLSLMNQQLP+ESQ VS+L D LNAE+VLGTV + EA NW+GYT+L++RML+NP LYG+
Sbjct: 872 YLSLMNQQLPVESQMVSRLTDMLNAEVVLGTVSSVSEATNWLGYTFLFVRMLKNPTLYGI 931
Query: 954 APEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTI 1013
E + D L +RRADL+HTA +LD+ L+KYD++SG Q T+LGRIAS++Y ++ ++
Sbjct: 932 THEQARADPLLEQRRADLIHTACVLLDKAGLIKYDKRSGIIQATELGRIASHFYCTYESM 991
Query: 1014 STYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAK 1073
TYN+ L T DI+L R+FS+S EFK ++VR +EK+EL K+ + PIP+KE+L+E SAK
Sbjct: 992 QTYNKLLVETCSDIDLFRIFSMSSEFKLLSVRDEEKLELQKMAEHAPIPIKENLDEASAK 1051
Query: 1074 INVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMV 1133
NVLLQAYISQLKLEG +L +DMVF+ QSAGRL RALFEIVL RGWA LA+K L L KMV
Sbjct: 1052 TNVLLQAYISQLKLEGFALQADMVFVAQSAGRLFRALFEIVLWRGWAGLAQKVLTLCKMV 1111
Query: 1134 TKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFV 1193
T+R W PL QF IP+E++ ++KK+++++R YDL +LG+LI+ PKMG+ L KF+
Sbjct: 1112 TQRQWGSLNPLHQFKKIPSEVVRSIDKKNYSFDRLYDLDQHQLGDLIKMPKMGKPLFKFI 1171
Query: 1194 HQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEY 1253
QFPKL + +QPITRT +++ELTITPDF WD+KVHG E FW+ +ED DGE ILHHE+
Sbjct: 1172 RQFPKLEMTTLIQPITRTTMRIELTITPDFKWDEKVHGSAEGFWIFIEDTDGEKILHHEF 1231
Query: 1254 FMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPP 1313
F+LK+++ ++H + VP+++P+PP Y++R+VSD+W+G++TVLP+SFRHLILPEKYPPP
Sbjct: 1232 FLLKQKFCSDEHVVKMIVPMFDPMPPLYYVRIVSDRWIGAETVLPISFRHLILPEKYPPP 1291
Query: 1314 TELLDLQPLPVTALRNPLYEALY--QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKT 1371
TELLDLQPLP++A+ N ++ ++ GFK FNPIQTQVF ++ +++NV+V AP GSGKT
Sbjct: 1292 TELLDLQPLPISAVTNKEFQTVFAESGFKVFNPIQTQVFRTVFESNENVIVCAPNGSGKT 1351
Query: 1372 ICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAM 1431
+E A+LR+ + E +AVYI P+E +A + Y DW+ + +G +V LTGE M
Sbjct: 1352 AIAELAVLRHFENTPEA---KAVYITPMEDMATKVYADWKRRLEPAIGHTIVLLTGEQTM 1408
Query: 1432 DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRM 1491
DLKL ++GQ+IISTPE+WD +SRRWKQRK VQ V LFI D+LH+IG G V EV+ SR
Sbjct: 1409 DLKLAQRGQLIISTPERWDNISRRWKQRKSVQNVKLFIADDLHMIGASNGAVFEVVCSRT 1468
Query: 1492 RYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITN 1551
RYI+SQ+E+ +R+VALS+SL NA+DLG W+G ++ FNF P RPVPL++ I+ ++++
Sbjct: 1469 RYISSQLESAVRVVALSSSLTNARDLGMWLGCSASATFNFMPSTRPVPLDLEIKSFNLSH 1528
Query: 1552 FEARMQAMTKPTFTAIVQHAKN--EKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFL 1609
+R AM +P + AI +HA KPALVFVP R+ R AV L+T + DG K
Sbjct: 1529 NASRFAAMERPVYQAICRHAGKLEPKPALVFVPVRRQTRPVAVALLTMALADGAPKRFLR 1588
Query: 1610 LWPAEEV-EPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSS 1668
L ++ + + +I++E L+ ++ GVG+LHEG D +V LFE+ I+VCV+
Sbjct: 1589 LAEHDDTFQALLADIEDESLRESVSCGVGFLHEGTAPKDVHIVQQLFESNAIQVCVVPRG 1648
Query: 1669 MCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP 1728
MC+ + ++A+LVVVM TQ+Y+G+ + + DYP+ D+L M+G A+RP+LD+ KCV++C
Sbjct: 1649 MCYQIEMSAYLVVVMDTQFYNGKYHVYEDYPIADMLHMVGLANRPILDSDAKCVVMCQTS 1708
Query: 1729 RKEYYKKFL--------------------------------------------RLTQNPN 1744
++ YYKKFL R+TQNPN
Sbjct: 1709 KRAYYKKFLCDPLPVESHLDHCLHDHFNAEIVTKTIENKQDAIDYLTWTLLYRRMTQNPN 1768
Query: 1745 YYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTI 1804
YYNLQG +HRHLSD LSELVE T+ DLE SKCI ++++MD N GMIASYYYISY TI
Sbjct: 1769 YYNLQGTTHRHLSDALSELVELTLKDLENSKCIAVKDEMDTVSLNLGMIASYYYISYQTI 1828
Query: 1805 ERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHV 1864
E FS SL KT+ + L+E+++++SE+ +P+R E+ ++R+L +N KFTDPHV
Sbjct: 1829 ELFSMSLKEKTKTRALIEIISASSEFGNVPMRHKEDVILRQLAERLPGQLKNQKFTDPHV 1888
Query: 1865 KANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMV 1924
K N L+ AH SR ++ L D E ++L A RL+QA VDV+SSNGWLS A+ AME+SQM+
Sbjct: 1889 KVNLLIHAHLSRVKLTAELNKDTELIVLRACRLVQACVDVLSSNGWLSPAIHAMELSQML 1948
Query: 1925 TQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLD 1984
TQ M+ + L QLPH L +R + K + +VF+L+E+E+D+R ++LQM +L D
Sbjct: 1949 TQAMYSNEPYLKQLPHCSAALLERAK---AKEVTSVFELLELENDDRSDILQMEGAELAD 2005
Query: 1985 IARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYP-KAKEE 2043
+ARFCN +P+I+++ E+++ + V + +++ L V LERD + PV + +P K KEE
Sbjct: 2006 VARFCNHYPSIEVATELEN-DVVTSNDNLMLAVSLERDNDIDGLAPPVVAPLFPQKRKEE 2064
Query: 2044 GWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCDSYMGCDQEYA 2103
GWWLV+GD+++N LL IKR+ + KS V+LDFAAP G + L+F+ DSY+G DQE+
Sbjct: 2065 GWWLVIGDSESNALLTIKRLVINEKSSVQLDFAAP-RPGHHKFKLFFISDSYLGADQEFD 2123
Query: 2104 FTVDVKEAG 2112
V+E G
Sbjct: 2124 VAFKVEEPG 2132
>sp|Q55CI8|HELCL_DICDI Activating signal cointegrator 1 complex subunit 3-like
OS=Dictyostelium discoideum GN=ascc3l PE=3 SV=1
Length = 2237
Score = 2037 bits (5277), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1059/2250 (47%), Positives = 1486/2250 (66%), Gaps = 178/2250 (7%)
Query: 9 AEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRGRPPEL 68
+E AR KQY Y+ NS+LV ++ + EP GEPE+LWG++ GDR +P EL
Sbjct: 2 SEELARSKQYGYKENSNLVFYSERNRSELKEPKGEPETLWGRLRGE-MGDRVNYSKPLEL 60
Query: 69 EEKLKK---------------------SAKKKKERDP------------------DADAA 89
EK++ + KK K ++P D
Sbjct: 61 LEKMQNLKRKTIEKEGGDVNSSNDTYSTTKKVKNQNPLEKKSTNRKSNGNNNNEKPIDIL 120
Query: 90 AASE---GTYQPKTKETRAAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPD 146
+A+E G Y+PKTKETR YE +L+ IQ+ +G QP +V GA DEIL++LK+D ++ P+
Sbjct: 121 SATESFQGLYKPKTKETRITYETLLTFIQRYVGDQPTEVVKGALDEILSILKDDTIRAPE 180
Query: 147 KKKEIEKLLNPIPNHVFDQLVSIGKLITDYQD---AGDAAGNDAANGGEDLDDDMGVAVE 203
KK EI KLL + + F +L +GK ITD++D A + LDD+ GVAV
Sbjct: 181 KKIEISKLLKGLNDVSFAELTQLGKQITDFKDSELAKQQQQQQQQQSMDSLDDEQGVAVI 240
Query: 204 FEENDDDEEESDLDM----------------------VQEEDEEEEEDVAEPNASGAMQM 241
+E +++E SD ++ + +D E + N Q
Sbjct: 241 IDEEEEEENLSDFEIRDDDDDDDDVDNNEVDDNNNNDSEAQDSEIQTKDENNNDDDENQK 300
Query: 242 ----------GGGIDDDDESGDANEGMSL-NVQDIDAYWLQRKISQAFDQQIDPQQCQKL 290
D + D N L + +ID++W+QRKIS+ F++ D ++L
Sbjct: 301 IKENNNNNNKSQKPDTKNTKDDKNNNSKLISPNEIDSFWIQRKISE-FER--DHDLSKQL 357
Query: 291 AEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKI 350
AE+ L IL + + R E +L+ DK +K ++ N+ +++CT LA+A++ +ERKKI
Sbjct: 358 AEKTLNILRQPNVRRCEQQLVDLFTIDKLDFLKLIINNKQTILYCTLLAKAENDQERKKI 417
Query: 351 EEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRDRRGLVD 410
E+EM P +IL++L TA +K +EK+ E+ + KD + ++ +
Sbjct: 418 EDEMSS-NPVTLSILNRLKGNEVTAATTEKTIEKT---ESNK-KDVEMKQQQQQQQDEIK 472
Query: 411 RDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPL 470
+ ++LL+L+ L+FQQG M N++ P+GS+R KG+EEIHVPA + P
Sbjct: 473 K--------PKKLLNLEELSFQQGSHLMTNKEFKFPKGSKREQYKGFEEIHVPARANPPF 524
Query: 471 DPNEKLIKISEMPEWAQPAFK--GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVA 528
+PNE+LI I E+PEW++ F+ G+ LNRVQS+++ A + +N+LL APT +GKTNVA
Sbjct: 525 NPNERLISIEELPEWSRLPFEESGVKSLNRVQSKLFDCAFKTDNNLLLSAPTSSGKTNVA 584
Query: 529 VLTILQQLALNRN-DDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGD 587
+LTIL ++ NR+ D G +KIVY+APMK+LV E+VGN S RL+ Y + V EL+GD
Sbjct: 585 MLTILHEIGKNRDRDSGKIRLDAFKIVYIAPMKSLVQEMVGNFSKRLKSYGIVVNELTGD 644
Query: 588 QTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIV 647
Q+LT +QI ETQIIVTTPEKWDIITRKSGDR YTQLVKL+IIDEIHLLHD RGPVLE IV
Sbjct: 645 QSLTNKQISETQIIVTTPEKWDIITRKSGDRAYTQLVKLIIIDEIHLLHDERGPVLECIV 704
Query: 648 ARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGI 707
ART+R IE+T++ +RLVGLSATLPNYEDVA FLRV + G+FYFD+SYRP+PL QQYIGI
Sbjct: 705 ARTLRMIESTQQMVRLVGLSATLPNYEDVATFLRVEPD-GVFYFDSSYRPIPLEQQYIGI 763
Query: 708 QVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFL 767
+ +++ Q ND+ + KV G HQ+LIFVHSR+ETAKT + +RD A+E+ ++ R++
Sbjct: 764 S-DRGIKQLQRCNDITFTKVSERVGDHQILIFVHSRRETAKTGKDLRDRAVEDQSIDRYI 822
Query: 768 KEDSVSREILQ-SHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVS 826
+ D SREIL+ + + +++ +LKDLLPYG IHHAG++R DR LVEDLFGD +QVL+S
Sbjct: 823 R-DPASREILRATASKQIQNAELKDLLPYGIGIHHAGLSRSDRSLVEDLFGDNRIQVLIS 881
Query: 827 TATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT 886
TATLAWGVNLPAHTVIIKGTQIYNPEKG W ELSPLD+ QMLGRAGRP +D GEGIIIT
Sbjct: 882 TATLAWGVNLPAHTVIIKGTQIYNPEKG-WCELSPLDVTQMLGRAGRPPFDKEGEGIIIT 940
Query: 887 GHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLR 946
EL++YLSL+N QL IESQF+S++AD LNAEIVLG++Q ++A NW+GYTYLYI M+R
Sbjct: 941 SQHELQFYLSLLNTQLSIESQFISRIADNLNAEIVLGSIQTVRDAVNWLGYTYLYICMIR 1000
Query: 947 NPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYY 1006
NP LY ++ + ++D L +RR DLVH+AATIL++N+L+KYDRKSG Q T+LG++AS+Y
Sbjct: 1001 NPPLYEISYDDFEKDPLLEQRRLDLVHSAATILEKNSLIKYDRKSGKLQSTELGKVASHY 1060
Query: 1007 YISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKES 1066
YI++ ++S Y EHLKP+M DIEL R+FSLS EFK V VR+ EK EL KLL+RVPIP+KE+
Sbjct: 1061 YITNSSMSIYQEHLKPSMSDIELLRVFSLSSEFKNVVVREGEKFELEKLLERVPIPIKEN 1120
Query: 1067 LEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKA 1126
+EEPS+KINVLLQ YIS LKL+G +L DM +I QSA R+ RALFEIVLK+GWAQLA+K
Sbjct: 1121 IEEPSSKINVLLQTYISNLKLDGFALVVDMFYIAQSASRITRALFEIVLKKGWAQLAKKI 1180
Query: 1127 LNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMG 1186
LNL+KM+ +MWS Q+PLRQF+ I ++L +LE++ E Y+ + Q+LG I+ P G
Sbjct: 1181 LNLAKMIDSKMWSSQSPLRQFHKISPKVLNQLERRGIPIEDLYEYNSQQLGNAIQNPSEG 1240
Query: 1187 RTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGE 1246
+ L +H FPKL L AHVQPI +L+VEL+ITPDF +D++ H +W+IVED DGE
Sbjct: 1241 KQLFDLIHNFPKLDLTAHVQPILHGLLRVELSITPDFQYDERYHNNSIGWWIIVEDVDGE 1300
Query: 1247 YILHHEYFMLKKQYIE-EDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLI 1305
IL+ EYF LKK+ + ED ++FTVP+ +PLPPQY++RV+SD W+G++ LP+SF+HLI
Sbjct: 1301 RILYFEYFSLKKKMVNGEDQLVSFTVPLSQPLPPQYYVRVISDHWIGAEYSLPISFQHLI 1360
Query: 1306 LPEKYPPPTELLDLQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAA 1364
LPEKYPP LLDLQPLP+ L++P E++++ F FN IQTQVF +Y ++DN ++A
Sbjct: 1361 LPEKYPPCRPLLDLQPLPIQVLKDPKAESIFKPTFSIFNAIQTQVFNCMYQSNDNAFISA 1420
Query: 1365 PTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG--QGLGMRV 1422
PT SGKT+C+E A++R ++ + V VY+AP++ LA R +DW KFG G+ V
Sbjct: 1421 PTNSGKTVCAEIALIRCFKQNPKAKV---VYLAPMQDLASVRLKDWSNKFGVKSPFGLVV 1477
Query: 1423 VELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP 1482
+LTG+ D K+L++ II++ EKWD LSR+WKQRK +Q ++L I+DELHLIGG+ GP
Sbjct: 1478 SDLTGDAVTDNKILDRSNIIVTNCEKWDILSRKWKQRKALQSINLLIVDELHLIGGEYGP 1537
Query: 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEI 1542
+E++VSRMRYI++Q N +R++ALS+S+ANA+DL WIGAT +NF P VRP+P+E
Sbjct: 1538 TMEIVVSRMRYISTQTGNALRVIALSSSIANARDLVLWIGATPQTCYNFHPNVRPIPVEY 1597
Query: 1543 HIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLM-TYSSMD 1601
IQG + +F ARM AMTKPT + ++ KN++ ++VFVP+RK R A D++ SS +
Sbjct: 1598 QIQGFEFPHFNARMLAMTKPTVYEVAKN-KNQQ-SIVFVPTRKLSRSLAADIIANVSSFE 1655
Query: 1602 GDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIK 1661
+L+ + P+++++ LK +L+ GV + H+GL + ++ VV LF +G I+
Sbjct: 1656 DTLTKPYLVCEEHVLTPYLEDVDSFALKQSLQMGVAFYHDGLTERERRVVEILFRSGSIR 1715
Query: 1662 VCVMSSSMCWGVP-LTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRP-----LL 1715
V + + S+ W + + A LVV+MGTQ Y G++ + DYP+ D+LQM+G A + +
Sbjct: 1716 VLIATHSVAWLLDNVFAQLVVIMGTQLYQGKDIRYIDYPINDILQMIGRAGKQEGGGVIS 1775
Query: 1716 DNSGKCVILCHAPRKEYYKKFL-------------------------------------- 1737
+ K ++LCHAP+KEYYK FL
Sbjct: 1776 NKVAKVLLLCHAPKKEYYKMFLNEPLPVESHLDHCLHDQFNSEIVTKTITKKQDALDYLT 1835
Query: 1738 ------RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMD-LSPSNH 1790
RL QNPNYYNL GVSH HLS+HLSELVENT+ +LE S CI I++D D +SP N
Sbjct: 1836 WTFLYRRLNQNPNYYNLSGVSHLHLSEHLSELVENTLVELEQSNCITIQDDQDKVSPLNL 1895
Query: 1791 GMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQ 1850
G+IASYYY+ Y TIE F SSL TR +G+++++++A E+ LPIR E++++ +L H
Sbjct: 1896 GIIASYYYLKYQTIELFGSSLKSTTRRRGIMDIISNAPEFNSLPIRHREDQILMKLASHL 1955
Query: 1851 RFSFENPKFTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGW 1910
+ P + + K N LLQ HFSR+ + +L DQ+ +L +A+RLLQA+VDVISSN W
Sbjct: 1956 PQKIDKPNYQEISTKVNVLLQCHFSRESISADLYQDQKFILENATRLLQAIVDVISSNSW 2015
Query: 1911 LSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDE 1970
L A+ AME+SQM+TQ MW+ DS+ QLPH K +R + IE+VFDL+ ++D+
Sbjct: 2016 LQPAIAAMELSQMITQAMWDSDSVFKQLPHMNK---RRIDAITSQGIESVFDLMSLDDNS 2072
Query: 1971 RRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVG 2030
R +LL +S + D+ + ++P+ID+S++VQD +++ A +T+++V+ERDL G E
Sbjct: 2073 RIQLLDLSQQESNDLVQSFMKYPDIDISYQVQDEDDLHADSIMTVEMVIERDL-GDDEEN 2131
Query: 2031 PVYSN---------RYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEA 2081
P+ N YPK K GWW ++GD+K N LLAIKR++ +K++VK +F PA
Sbjct: 2132 PIEINDSINVVSAPYYPKEKICGWWALIGDSKNNHLLAIKRITFLKKTKVKFEFPTPA-V 2190
Query: 2082 GKKTYTLYFMCDSYMGCDQEYAFTVDVKEA 2111
GK +LY DSY GCDQE+ +++ A
Sbjct: 2191 GKHQLSLYLFSDSYNGCDQEHELNINILPA 2220
>sp|Q9UT24|BRR2_SCHPO Pre-mRNA-splicing factor brr2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=brr2 PE=1 SV=1
Length = 2176
Score = 1918 bits (4968), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1008/2182 (46%), Positives = 1399/2182 (64%), Gaps = 132/2182 (6%)
Query: 17 QYEYRANSSLVLTTDSR--PRDTHEPTGEPESLWGKIDPRSFGDRAFRGRPPELEEKLKK 74
QY Y A S+LV D R R EPTGEPESL ++ G RA +P L +L +
Sbjct: 29 QYSYSAMSNLVTQADRRFVSRRDAEPTGEPESLVNRVSIADMGSRARIEKPSTLPLELTQ 88
Query: 75 SAKKKKERDPDADAAAASEGT-----------------------YQPKTKETRAAYEAML 111
++ R P DA + G Y P T ETR Y+ +L
Sbjct: 89 EVQEV--RLPRKDAESLEIGIRQPEREKRSSAILKYFDSFEILKYNPLTDETREVYDYIL 146
Query: 112 SVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNP-IPNHVFDQLVSIG 170
S IQQ LG Q I+ AAD I+ +LK+ ++ +KK+IE++L+ +P F QLV++G
Sbjct: 147 SFIQQYLGDQSPEILRSAADLIIELLKDSSLDEQGRKKQIEEVLSTELPQDRFSQLVNLG 206
Query: 171 KLITDYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQE--------- 221
+TDY + N+ ++ GV V F E D++EE + E
Sbjct: 207 NRLTDYTVEQEEELNEEGV------NESGVPVLFNEADEEEEAVEAMEEDEVAEDEDVVL 260
Query: 222 ----EDEEEEEDVAEPNASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQA 277
EEE++++ P+ ++ E +++ ++IDA+WLQR+I++
Sbjct: 261 ETSISQEEEKKNIENPDTEVTFISA-------DTKKVTEIPTVHPREIDAFWLQREIAKY 313
Query: 278 FDQQIDPQQCQKLAEEVLKIL-AEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCT 336
F D CQ+ + + L A+ D E+EN+L+ ++ F L++ L +NR +V CT
Sbjct: 314 F---ADAVVCQEKTNQAFEALSADYDLGELENELMSIFDYEHFYLVQLLTKNRWTIVSCT 370
Query: 337 RLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKN-LEKSIREEARRLKD 395
L RA EER +EE++ G + IL+ L T + N L ++ E+A
Sbjct: 371 MLKRAATDEERLGVEEQIRAAG--RSWILEALRPGAITIPDDGLNELNNNVVEKAEPAPV 428
Query: 396 ESASDGGRDRRGLVDRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNK 455
+ + + + +DL+ F +G M+N+ LPEGS R T K
Sbjct: 429 SEIP---------LSKTLTSHKIVPKHQVDLENYVFTEGSRLMSNKAVKLPEGSFRRTGK 479
Query: 456 GYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNIL 515
GYEEIHVPA L +E+L+KI E+PEW+ AF LNR+QS +Y A + +NIL
Sbjct: 480 GYEEIHVPAPNKAVLGADERLVKIKELPEWSHQAFLNTQSLNRIQSHLYPIAFGTDENIL 539
Query: 516 LCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ 575
LCAPTGAGKTNVA+L IL +L + +D SFN N+KIVY+AP+KALV E+V N S RL
Sbjct: 540 LCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYIAPLKALVQEMVNNFSKRLT 599
Query: 576 MYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635
Y+++V EL+GD LT+QQI ETQIIVTTPEKWDIITRK+ D +Y LV+L+IIDE+HLL
Sbjct: 600 PYNIRVAELTGDSQLTKQQISETQIIVTTPEKWDIITRKANDLSYVNLVRLVIIDEVHLL 659
Query: 636 HDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSY 695
HD RGPVLESIVAR R E T E +RLVGLSATLPNY DVA FL V+ +KGLFYFD++Y
Sbjct: 660 HDERGPVLESIVARIFRHQEETLEQVRLVGLSATLPNYTDVASFLHVDPKKGLFYFDSTY 719
Query: 696 RPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRD 755
RP PL Q++IGI K P +R Q N+ CYEKV+ AGK+QVLIFVHSRKETAKTAR IRD
Sbjct: 720 RPCPLKQEFIGITEKTPFKRMQTTNEACYEKVMQHAGKNQVLIFVHSRKETAKTARFIRD 779
Query: 756 TALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDL 815
ALE +T+G L+ D+ SREIL++ D +LKDLLPYGFAIHHAGM R DRQ EDL
Sbjct: 780 KALEEETIGHLLRSDAASREILRAEADSTSDENLKDLLPYGFAIHHAGMRREDRQTSEDL 839
Query: 816 FGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQ 875
F DG +QVLVSTATLAWGVNLPAHTVIIKGTQ+Y+PEKG WTELSP D++QMLGRAGRPQ
Sbjct: 840 FADGTIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGIWTELSPQDVLQMLGRAGRPQ 899
Query: 876 YDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWI 935
+D+YGEGIIIT HSEL+YYLSLMNQQLPIESQF+ +LAD LNAE+ LGTV++ ++ +W+
Sbjct: 900 FDTYGEGIIITAHSELQYYLSLMNQQLPIESQFMRRLADCLNAEVSLGTVRSIEDGVDWL 959
Query: 936 GYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQ 995
GYTYLY+RMLR+PALY + PE +D L ++RADL+H+AA +L++ L+ Y+R+SG
Sbjct: 960 GYTYLYVRMLRSPALYSVGPE-YDDDKYLVQKRADLLHSAAILLEKCKLLVYNRQSGTLT 1018
Query: 996 VTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKL 1055
T+LG++A+ YY++H +++ YN L T IEL R+FS S+EFK++ VR++EK+ELAKL
Sbjct: 1019 ATELGKVAASYYVTHNSMAIYNRLLMQTTSFIELFRVFSFSDEFKHIPVREEEKVELAKL 1078
Query: 1056 LDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVL 1115
L+RVPIP++E L+EP+AKIN LLQ+YIS+ +L+G +L +DMV++TQSAGR++RA+FEI L
Sbjct: 1079 LERVPIPIRERLDEPAAKINALLQSYISRQRLDGFALVADMVYVTQSAGRIMRAIFEISL 1138
Query: 1116 KRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQE 1175
+RGW+ +A +L+ KM+ KR+W +PLRQF P+E++ ++EKK+F W+RY+DL P E
Sbjct: 1139 RRGWSSVATLSLDTCKMIEKRLWPTMSPLRQFPNCPSEVIRRVEKKEFPWQRYFDLDPAE 1198
Query: 1176 LGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEP 1235
LGEL+ PK GR ++ V FP+L + AHVQPITR++++VEL I F WDD + G E
Sbjct: 1199 LGELVGVPKEGRRVYNMVQSFPRLSVEAHVQPITRSLVRVELVINSQFNWDDHLSGTSEA 1258
Query: 1236 FWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQT 1295
FW++VED DG+ +LH+E F L K+Y +++H +NFTVP+ EPLPP YFI++VSD+WL S T
Sbjct: 1259 FWILVEDVDGDRLLHYEQFFLLKKYKDDEHIVNFTVPLLEPLPPCYFIKIVSDRWLHSIT 1318
Query: 1296 VLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYN 1355
+P+SF+ LI+PEK+P PT LLDLQ PV++L NP + +LY FK FN IQTQVF +Y
Sbjct: 1319 KVPLSFQRLIMPEKFPAPTPLLDLQNAPVSSLNNPSFISLYPNFKFFNKIQTQVFNSVYK 1378
Query: 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415
T+D+V + AP GSGKT+C+E A+L +H + G AVYIAP++ + RY +W KF
Sbjct: 1379 TNDSVFIGAPNGSGKTVCAELALL-HHWSQEDYGT--AVYIAPIQEIVDRRYEEWYGKFS 1435
Query: 1416 Q-GLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELH 1474
G G +V+LTGE + DLKL++ +I TP +WD+LS+RW+ + +Q+V +I DEL
Sbjct: 1436 DLGDGKVLVKLTGERSQDLKLIQVADLIFCTPSQWDSLSKRWRSMRSIQKVDFYICDELQ 1495
Query: 1475 LIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPG 1534
L+GG GP+ E+++SR+RY+A Q+E IR+V LS S+ANA+DLGEW+G + +FNF P
Sbjct: 1496 LLGGFYGPLYEIVISRIRYMAVQLEKNIRVVGLSVSVANARDLGEWLGTSPQCIFNFSPK 1555
Query: 1535 VRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDL 1594
RP PL IH+Q IT+F + M AM+KP + ++ K +VF P RK + A DL
Sbjct: 1556 DRPNPLTIHLQSFSITHFPSLMLAMSKPIYRSLKNFISQRKSTIVFTPDRKVAKQLAFDL 1615
Query: 1595 MTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSAL 1654
+T+S D D+ L+ E E F + +++ L+ +L+HG+ Y+ E + DQ +V L
Sbjct: 1616 VTFSMADEDE----YLFSLMENEAF-NKVEDAALQQSLKHGIAYISEITSSNDQNIVQYL 1670
Query: 1655 FEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPL 1714
+ G IKV + S + + + ++ V+VMGTQYYDG+E+ + DYP+++LLQM+G +
Sbjct: 1671 YRHGLIKVLIASRDVIYSLKAKSNAVIVMGTQYYDGKEHRYIDYPISELLQMLGFTASIG 1730
Query: 1715 LDNSGKCVILCHAPRKEYYKKFL------------------------------------- 1737
+ +++ +KEYYKKFL
Sbjct: 1731 SSELSQVILMTVTTKKEYYKKFLNEPLPMESHLQVWLHDAFVSEISTQTIESKQDAVDWL 1790
Query: 1738 -------RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIII-EEDMDLSPSN 1789
RL NP YY LQ ++H +S+ LS+LVE T++DL ++ I + +ED N
Sbjct: 1791 TWSYMYRRLVANPAYYGLQDITHESVSEFLSDLVETTMNDLSEARLITVDDEDDSCVALN 1850
Query: 1790 HGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHH 1849
MIAS+Y I+Y T++ F+ SL+ +T+MKGLLE++ SA+EY QLPIR E+ V+ R+
Sbjct: 1851 LAMIASHYGITYITMQTFALSLSERTKMKGLLEIVTSAAEYEQLPIRKYEDIVLERIHSR 1910
Query: 1850 QRFSFENPKFTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNG 1909
NP + DPH K+ LL AHFSR ++ L +DQ+ +L LL A VD +SS G
Sbjct: 1911 LPVRLSNPNYEDPHTKSFILLAAHFSRFELPPGLVIDQKFILTRVHNLLGACVDTLSSEG 1970
Query: 1910 WLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDD 1969
L + ME+SQMVTQ +W+RDS L Q+P+F L +RC + + + VFD+++++D+
Sbjct: 1971 HLIACIRPMEMSQMVTQALWDRDSPLKQIPYFDDALIERCNK---EGVHDVFDIIDLDDE 2027
Query: 1970 ERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEV 2029
+R ELL M + L A F N++P+ID+ FE++DSE+V A L V L R+LE EV
Sbjct: 2028 KRTELLHMDNAHLAKCAEFINKYPDIDIDFEIEDSEDVHANSPSVLIVQLTRELEEDEEV 2087
Query: 2030 -GPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTL 2088
V + +P K E WWLV+ D KT LLAIK+++L R K++F PA G Y L
Sbjct: 2088 DTTVIAPYFPAQKTEHWWLVISDDKT--LLAIKKITLGRSLTTKMEFVPPA-MGTLKYKL 2144
Query: 2089 YFMCDSYMGCDQEYAFTVDVKE 2110
DSYMG D E F +V E
Sbjct: 2145 SCFSDSYMGVDYEKEFECNVLE 2166
>sp|F1NTD6|ASCC3_CHICK Activating signal cointegrator 1 complex subunit 3 OS=Gallus gallus
GN=ascc3 PE=3 SV=2
Length = 2211
Score = 1531 bits (3964), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 830/1944 (42%), Positives = 1191/1944 (61%), Gaps = 144/1944 (7%)
Query: 293 EVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEE 352
E+L GD E++N+L L + F LI+ LL+NR +V R Q+ + + ++E
Sbjct: 261 EMLASPKSGD--ELQNELFELLGPEGFELIEKLLQNRSVIV--ERSLTCQNDNKFQTLQE 316
Query: 353 EMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREE----ARRLKDESASDGGRDRRGL 408
+ + A T E++K L K R E ARR K ++ DG GL
Sbjct: 317 QCKKFIGENAKPNYGCQVT--IQSEQEKLLMKQYRREEKRNARREK-QAGEDGEVSGEGL 373
Query: 409 VDRDA---------------DGGWLGQRQLLDLDTLAF----------QQGGLFMANRKC 443
+ D LG+++ +DL+ + + + F+ K
Sbjct: 374 LCFDPKELRLQRELALLNARSVPILGRQREVDLERIHYPHVYDSRAEAMKTSAFIGGAKV 433
Query: 444 DLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRV 503
LPE QR NK YEE+ +P + P+ EK++ I ++ E Q AFKGM +LNR+QS V
Sbjct: 434 FLPESVQRENNKMYEEVKIPHSEPMPIGIEEKIVYIKDLDEIGQLAFKGMKRLNRIQSIV 493
Query: 504 YKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV 563
+++A ++ +N+L+CAPTGAGKTN+A+LT+L ++ G +KIVYVAPMKAL
Sbjct: 494 FETAYNTNENMLICAPTGAGKTNIAMLTVLHEIR-QHVQHGVIKKDEFKIVYVAPMKALA 552
Query: 564 AEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS-GDRTYTQ 622
AE+ S RL+ + V+EL+GD L++ +I TQ++VTTPEKWD++TRKS GD +Q
Sbjct: 553 AEMTNYFSKRLEPLGITVKELTGDMQLSKGEILRTQMLVTTPEKWDVVTRKSVGDVALSQ 612
Query: 623 LVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV 682
LVKLLI+DE+HLLH++RGPVLESIVART+RQ+E+T+ IR++GLSATLPNY DVA FL V
Sbjct: 613 LVKLLILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHV 672
Query: 683 NLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVH 741
N GLFYFD+ +RPVPL Q +IGI+ +Q+ M+++CYE V+ + HQV++FVH
Sbjct: 673 NPYIGLFYFDSRFRPVPLGQTFIGIKTTNKVQQLNHMDEVCYENVLKQIMAGHQVMVFVH 732
Query: 742 SRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHH 801
+R T +TA A+R+ A N + FL + ++ L++L P GF+IHH
Sbjct: 733 ARNATVRTAMALREKAKNNGHICHFLSPQGSDYGQAEKQVQRSRNKQLRELFPDGFSIHH 792
Query: 802 AGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSP 861
AGM R DR LVE+LF +GH++VLV TATLAWGVNLPAH V+IKGTQIY ++G++ +L
Sbjct: 793 AGMLRQDRSLVENLFSNGHIKVLVCTATLAWGVNLPAHAVVIKGTQIYAAKRGSFVDLGI 852
Query: 862 LDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIV 921
LD+MQ+ GRAGRPQ+D +GEGIIIT H +L +YL+L+ QQ PIESQF+ LAD LNAEI
Sbjct: 853 LDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLTLLTQQNPIESQFLESLADNLNAEIA 912
Query: 922 LGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDR 981
LGTV N +EA WI YTYLY+RM NP +YG++ + + D L + R LV LD+
Sbjct: 913 LGTVTNVEEAVKWISYTYLYVRMRANPLVYGISHKAYQMDPGLEKHREQLVIEVGRKLDK 972
Query: 982 NNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKY 1041
+++++ ++G+F TDLGR AS+YYI + TI T+NE + ++ + S +EEF+
Sbjct: 973 ARMIRFEERTGFFSSTDLGRTASHYYIKYNTIETFNELFDAHKTEGDILAIVSKAEEFEQ 1032
Query: 1042 VTVRQDEKMELAKLL-DRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFIT 1100
+ VR++E EL LL D +P +E KIN+LLQ YIS+ +L+ SL SD ++
Sbjct: 1033 IKVREEEIEELDTLLNDFCELPAPGGVENNYGKINILLQTYISRGELDSFSLISDSAYVA 1092
Query: 1101 QSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEK 1160
Q+A R++RALFEI L++ W + + LNLSK++ KR+W +PLRQF+ +P +L KLE+
Sbjct: 1093 QNAARIVRALFEIALRKRWPAMTYRLLNLSKVIDKRLWGWVSPLRQFSVLPPSVLSKLEE 1152
Query: 1161 KDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTIT 1220
K+ ++ D+ E+G ++ K+G + + VHQ P + + A +QPITRTVL+V L IT
Sbjct: 1153 KNLTVDKMKDMRKDEIGHMLHHVKIGLKVKQCVHQIPSIAMEATIQPITRTVLRVRLNIT 1212
Query: 1221 PDFLWDDKVHGYV-EPFWVIVEDNDGEYILHHEYFMLKKQYI--EEDHSLNFTVPIYEPL 1277
PDF W+D+VHG V EP+W+ VED ++I H EYF+++K+ + +E L FT+PI+EPL
Sbjct: 1213 PDFTWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFIIQKKQVITKEPQLLVFTIPIFEPL 1272
Query: 1278 PPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQ 1337
P QY+IR VSD+WLG++ V ++F+HLILPE++PP TELLDLQPLPVTAL +P YE LY+
Sbjct: 1273 PSQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPHTELLDLQPLPVTALGHPEYEVLYK 1332
Query: 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397
F HFNPIQTQ+F LY+TD NVL+ APTGSGKT+ +E AI R K + +AVYIA
Sbjct: 1333 -FTHFNPIQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKYPTS---KAVYIA 1388
Query: 1398 PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWK 1457
PL+AL +ER DW+++ + LG +VVELTG+ D++ + + +I++TPEKWD +SR W+
Sbjct: 1389 PLKALVRERIEDWKVRIEEKLGKKVVELTGDVTPDMRAIAQADLIVTTPEKWDGVSRSWQ 1448
Query: 1458 QRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDL 1517
R YVQ+VS+ IIDE+HL+G + GPVLEVIVSR +I+S E +R+V LST+LANA+DL
Sbjct: 1449 NRSYVQKVSILIIDEIHLLGDERGPVLEVIVSRTNFISSHTEKPVRVVGLSTALANARDL 1508
Query: 1518 GEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPA 1577
+W+ GLFNF P VRPVPLE+HIQG ++ RM M KP F AI H+ KP
Sbjct: 1509 ADWLNINQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMARMNKPAFQAIRSHSP-AKPV 1567
Query: 1578 LVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637
L+FV SR+ RLT++DL+ + + + D K +L E+ I +++ LK TL G+G
Sbjct: 1568 LIFVSSRRQTRLTSLDLIAFLATEDDPKQ-WLKMDEREMNDIIGTVRDSNLKLTLAFGIG 1626
Query: 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTD 1697
H GL++ D++ V LF KI+V + +S++ WGV AHLV+V GT+YYDG+ + D
Sbjct: 1627 MHHAGLHERDRKTVEELFVNCKIQVLIATSTLAWGVNFPAHLVIVKGTEYYDGKTRRYVD 1686
Query: 1698 YPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFL-------------------- 1737
YP+TD+LQMMG A RP D+ GK VIL H +K++YKKFL
Sbjct: 1687 YPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPFPVESSLLDVLADHLNA 1746
Query: 1738 ------------------------RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEA 1773
RL NP YYNL VSH ++ +LS LVE ++ DLE
Sbjct: 1747 EIAAGTITSKQDAMDYITWTYFFRRLIMNPTYYNLDNVSHDTMNKYLSSLVEKSLFDLEC 1806
Query: 1774 SKCIIIEED-MDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQ 1832
S CI I ED + P +G IASYYY+ + TI F L P++ ++ LL +L +A EY
Sbjct: 1807 SYCIEIGEDNRTIEPLTYGRIASYYYLKHPTIGMFKDQLKPESSVEELLLILTNADEYTD 1866
Query: 1833 LPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQV-GGNLKLDQEEVL 1891
LP+R E+++ L H F H K + LLQAHFS + + D + VL
Sbjct: 1867 LPVRHNEDQMNSELAKHLPIEVNPHSFDSSHTKTHLLLQAHFSHAILPCPDYATDTKTVL 1926
Query: 1892 LSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPH--------FMK 1943
A R+ QAM+DV + +GWL AL + QMV QG W DS LL +P+ F K
Sbjct: 1927 DQAIRICQAMLDVTAHHGWLVAALNITNLVQMVVQGRWIHDSSLLTVPNIEVQHLYLFQK 1986
Query: 1944 DLAKRCQ------ENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIAR---FCNRFPN 1994
++ + + P + + + E ++D ++ S++Q I++ F +R P
Sbjct: 1987 WSQQKRKSVHGGYQGPIECLPELMAACEGKEDVFASIVD-SELQTAHISQAWNFLSRLPI 2045
Query: 1995 IDMSFEVQDS---------------------ENVR-----AGEDITLQVVLERD---LEG 2025
+++S ++ +N R A ++ LQ+ L+R +G
Sbjct: 2046 LNVSLSIKGCWDDPAQPQNEVPVPCLTADTRDNKRWIKLHADQEYVLQIHLQRTQMGYQG 2105
Query: 2026 RTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQR-KSRVKLDFAAPAEAGKK 2084
+ + V + R+PK K+EGW+L++G+ +L+A+KR R ++ V + F P GK
Sbjct: 2106 KQDSKAV-APRFPKVKDEGWFLILGEVDKKELIALKRTGYVRNRNTVSVAFYTPETPGKC 2164
Query: 2085 TYTLYFMCDSYMGCDQEYAFTVDV 2108
YTLY M DSY+G DQ+Y +++
Sbjct: 2165 IYTLYLMSDSYLGMDQQYDIYLNI 2188
>sp|E1BNG3|ASCC3_BOVIN Activating signal cointegrator 1 complex subunit 3 OS=Bos taurus
GN=ascc3 PE=3 SV=1
Length = 2201
Score = 1515 bits (3923), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 829/1947 (42%), Positives = 1179/1947 (60%), Gaps = 143/1947 (7%)
Query: 293 EVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEE 352
++L + GD E++++L L D LI+ LL+NR+ +V R + + + + +++
Sbjct: 253 DMLASVKSGD--ELQDELFELLGPDGLELIEKLLQNRVTIV--DRFLNSSNDHKLQALQD 308
Query: 353 EMMGLGPDLAAILDQLHATRATAK-ERQKNLEKSIREEARRL--KDESASDGGRDRRGLV 409
+ L + + T + E++K L K R E +R+ +++ A + G GL+
Sbjct: 309 NCKKI---LGENAKPNYGCQVTIQSEQEKQLMKQYRREEKRIARREKKAGEDGEATEGLL 365
Query: 410 --------------------------DRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKC 443
RD D + + D A + F+A K
Sbjct: 366 CFDPKELRIHREQALMNARNVPILSRQRDTDVEKIRYPHVYDSQAEAMRTSA-FIAGAKM 424
Query: 444 DLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRV 503
LPEG QR NK YEE+ +P + P+ EK + I ++ E Q AFKGM +LNR+QS V
Sbjct: 425 ILPEGIQRENNKIYEEVKIPYTEPMPIGFEEKPVYIQDLDEIGQLAFKGMRRLNRIQSIV 484
Query: 504 YKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV 563
+++A ++ +N+L+CAPTGAGKTN+A+LT+L ++ G + +KIVYVAPMKAL
Sbjct: 485 FETAYNTNENMLICAPTGAGKTNIAMLTVLHEIR-QHFQQGVIKKNEFKIVYVAPMKALA 543
Query: 564 AEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS-GDRTYTQ 622
AE+ S RL+ + V+EL+GD L++ +I TQ++VTTPEKWD++TRKS GD +Q
Sbjct: 544 AEMTNYFSKRLEPLGIVVKELTGDMQLSKNEILRTQMLVTTPEKWDVVTRKSVGDVALSQ 603
Query: 623 LVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV 682
+VKLLI+DE+HLLH++RGPVLESIVART+RQ+E+T+ IR++GLSATLPNY DVA FL V
Sbjct: 604 IVKLLILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHV 663
Query: 683 NLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVH 741
N GLF+FD +RPVPL Q ++GI+ +Q+ M+++CYE V+ V HQV++FVH
Sbjct: 664 NPCIGLFFFDGRFRPVPLGQTFLGIKSANKVQQLNNMDEVCYESVLKQVKAGHQVMVFVH 723
Query: 742 SRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHH 801
+R T +TA ++ + A N + FL + ++ +++L P GF+IHH
Sbjct: 724 ARNATVRTAMSLIERAKNNGQICYFLPTQGPEYGHAEKQVQKSRNRQVRELFPDGFSIHH 783
Query: 802 AGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSP 861
AGM R DR LVE LF +GH++VLV TATLAWGVNLPAH VIIKGTQIY ++G++ +L
Sbjct: 784 AGMLRQDRNLVESLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGI 843
Query: 862 LDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIV 921
LD+MQ+ GRAGRPQ+D +GEGIIIT H +L +YLSL+ QQ PIESQF+ LAD LNAEI
Sbjct: 844 LDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLSLLTQQNPIESQFLESLADNLNAEIA 903
Query: 922 LGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDR 981
LGTV N +EA WI YTYLY+RM NP +YG++ + + D TL + R LV LD+
Sbjct: 904 LGTVTNVEEAVKWISYTYLYVRMRANPLVYGISHKAYQIDPTLAKHREQLVIEVGRKLDK 963
Query: 982 NNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKY 1041
+++++ ++GYF TDLGR AS+YYI + TI T+NE + ++ + S +EEF
Sbjct: 964 ARMIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNELFDAHKTESDIFAIVSKAEEFDQ 1023
Query: 1042 VTVRQDEKMELAKLLDR-VPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFIT 1100
+ VR++E EL LL + +E KIN+LLQ YIS+ +++ SL SD ++
Sbjct: 1024 IKVREEEIEELDTLLSNFCELSAPGGVENSYGKINILLQTYISRGEVDSFSLISDSAYVA 1083
Query: 1101 QSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEK 1160
Q+A R++RALFEI L++ W + + LNLSK++ KR+W +PLRQF+ +P IL +LE+
Sbjct: 1084 QNAARIVRALFEIALRKRWPAMTYRLLNLSKVIDKRLWGWTSPLRQFSVLPPHILTRLEE 1143
Query: 1161 KDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTIT 1220
K+ ++ D+ E+G ++ +G + + VHQ P + + A +QPITRTVL+V L+I+
Sbjct: 1144 KNLTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQIPSVTMEASIQPITRTVLRVTLSIS 1203
Query: 1221 PDFLWDDKVHGYV-EPFWVIVEDNDGEYILHHEYFM-LKKQYI-EEDHSLNFTVPIYEPL 1277
PDF W+D+VHG V EP+W+ VED ++I H EYF+ LKKQ I +E L FT+PI+EPL
Sbjct: 1204 PDFSWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLVLKKQVISKEAQLLVFTIPIFEPL 1263
Query: 1278 PPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQ 1337
P QY+IR VSD+WLG++ V ++F+HLILPE++PP TELLDLQPLPVTAL YEALY
Sbjct: 1264 PSQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPHTELLDLQPLPVTALGCEAYEALY- 1322
Query: 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397
F HFNP+QTQ+F LY+TD NVL+ APTGSGKT+ +E AI R K + +AVYIA
Sbjct: 1323 NFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKYPTS---KAVYIA 1379
Query: 1398 PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWK 1457
PL+AL +ER DW+++ + LG +V+ELTG+ D+K + K +I++TPEKWD +SR W+
Sbjct: 1380 PLKALVRERMDDWKVRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQ 1439
Query: 1458 QRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDL 1517
R YV+QV++ IIDE+HL+G + GPVLEVIVSR +I+S E +RIV LST+LANA+DL
Sbjct: 1440 NRNYVKQVTILIIDEIHLLGEERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDL 1499
Query: 1518 GEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPA 1577
+W+ GLFNF P VRPVPLE+HIQG ++ RM +M KPTF AI H+ KP
Sbjct: 1500 ADWLNIRQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMASMNKPTFQAIRSHSP-AKPV 1558
Query: 1578 LVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637
L+FV SR+ RLTA++L+ + + + D K +L E+E I I++ LK TL G+G
Sbjct: 1559 LIFVSSRRQTRLTALELIAFLATEEDPKQ-WLNMDEREMENIIGTIRDSNLKLTLAFGIG 1617
Query: 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTD 1697
H GL++ D++ V LF KI+V + +S++ WGV AHLV++ GT+YYDG+ + D
Sbjct: 1618 MHHAGLHERDRKTVEELFVNCKIQVLIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVD 1677
Query: 1698 YPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFL-------------------- 1737
+P+TD+LQMMG A RP D+ GK VIL H +K++YKKFL
Sbjct: 1678 FPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPFPVESSLLGVLSDHLNA 1737
Query: 1738 ------------------------RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEA 1773
RL NP+YYNL VSH ++ LS LVE ++ +LE
Sbjct: 1738 EIAGGTITSKQDAMDYITWTYFFRRLIMNPSYYNLSDVSHDSVNKFLSNLVEKSLVELEH 1797
Query: 1774 SKCIIIEED-MDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQ 1832
S CI I ED + P +G IASYYY+ + T++ F L P+ + LL +L+ A EY
Sbjct: 1798 SYCIEIGEDNRSIEPLTYGRIASYYYLKHQTVKMFKERLKPECGTEELLSILSDAEEYTD 1857
Query: 1833 LPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQV-GGNLKLDQEEVL 1891
LP+R E+ + L F PH KA+ LLQAH SR + + D + VL
Sbjct: 1858 LPVRHNEDHMNSELAKCLPLESNPHSFDSPHTKAHLLLQAHLSRTMLPCPDYDTDTKTVL 1917
Query: 1892 LSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMK-DLAKRCQ 1950
A R+ QAM+DV + GWL L + QMV QG W +DS LL +PH L +
Sbjct: 1918 DQALRVCQAMLDVAAHQGWLVTVLNITSLVQMVIQGRWLKDSSLLTIPHIENHHLHIFRK 1977
Query: 1951 ENPGK---------SIETVFDLVEMEDDERRELLQMSDVQL-----LDIARFCNRFPNID 1996
+PG SIE + +L+ + M + +L F + P ID
Sbjct: 1978 WSPGMKGPHAGYHGSIECLPELIHACAGKDHVFSSMIEKELPAPKMKQAWNFLSHLPVID 2037
Query: 1997 MSFEVQ------------------------DSENVR--AGEDITLQVVLERDL----EGR 2026
+ V+ D+ VR A ++ LQV L+R +G+
Sbjct: 2038 VGLSVKGWWDDAAEGHDEISITTVASDKHSDNRWVRLHADQEYVLQVSLQRVSLGFHKGK 2097
Query: 2027 TEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSR-VKLDFAAPAEAGKKT 2085
+ V + R+PK+K+EGW+L++G+ +L+A+KRV R V + F P G+
Sbjct: 2098 QDSHAV-TPRFPKSKDEGWFLILGEVDKRELIALKRVGYVRSHHMVSISFYTPEVPGRYI 2156
Query: 2086 YTLYFMCDSYMGCDQEYAFTVDVKEAG 2112
YTLYFM D Y+G DQ+Y + V A
Sbjct: 2157 YTLYFMSDCYLGLDQQYDIHLHVTPAS 2183
>sp|Q8N3C0|ASCC3_HUMAN Activating signal cointegrator 1 complex subunit 3 OS=Homo sapiens
GN=ASCC3 PE=1 SV=3
Length = 2202
Score = 1503 bits (3891), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 816/1946 (41%), Positives = 1173/1946 (60%), Gaps = 141/1946 (7%)
Query: 293 EVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEE 352
++L + GD E++++L L + LI+ LL+NR+ +V R + + + +++
Sbjct: 253 DMLASIKSGD--ELQDELFELLGPEGLELIEKLLQNRITIV--DRFLNSSNDHRFQALQD 308
Query: 353 EMMGLGPDLAAILDQLHATRATAK-ERQKNLEKSIREEARRL--KDESASDGGRDRRGLV 409
+ L + + T + E++K L K R E +R+ +++ A + GL+
Sbjct: 309 NCKKI---LGENAKPNYGCQVTIQSEQEKQLMKQYRREEKRIARREKKAGEDLEVSEGLM 365
Query: 410 --------------------------DRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKC 443
RDAD + + D A + F+A K
Sbjct: 366 CFDPKELRIQREQALLNARSVPILSRQRDADVEKIHYPHVYDSQAEAMKTSA-FIAGAKM 424
Query: 444 DLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRV 503
LPEG QR NK YEE+ +P + PL EK + I ++ E Q AFKGM +LNR+QS V
Sbjct: 425 ILPEGIQRENNKLYEEVRIPYSEPMPLSFEEKPVYIQDLDEIGQLAFKGMKRLNRIQSIV 484
Query: 504 YKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV 563
+++A ++ +N+L+CAPTGAGKTN+A+LT+L ++ G + +KIVYVAPMKAL
Sbjct: 485 FETAYNTNENMLICAPTGAGKTNIAMLTVLHEIR-QHFQQGVIKKNEFKIVYVAPMKALA 543
Query: 564 AEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS-GDRTYTQ 622
AE+ S RL+ + V+EL+GD L++ +I TQ++VTTPEKWD++TRKS GD +Q
Sbjct: 544 AEMTDYFSRRLEPLGIIVKELTGDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQ 603
Query: 623 LVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV 682
+V+LLI+DE+HLLH++RGPVLESIVART+RQ+E+T+ IR++GLSATLPNY DVA FL V
Sbjct: 604 IVRLLILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHV 663
Query: 683 NLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVH 741
N GLF+FD +RPVPL Q ++GI+ +Q+ M+++CYE V+ V HQV++FVH
Sbjct: 664 NPYIGLFFFDGRFRPVPLGQTFLGIKCANKMQQLNNMDEVCYENVLKQVKAGHQVMVFVH 723
Query: 742 SRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHH 801
+R T +TA ++ + A + F + + ++ +++L P GF+IHH
Sbjct: 724 ARNATVRTAMSLIERAKNCGHIPFFFPTQGHDYVLAEKQVQRSRNKQVRELFPDGFSIHH 783
Query: 802 AGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSP 861
AGM R DR LVE+LF +GH++VLV TATLAWGVNLPAH VIIKGTQIY ++G++ +L
Sbjct: 784 AGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGI 843
Query: 862 LDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIV 921
LD+MQ+ GRAGRPQ+D +GEGIIIT H +L +YL+L+ Q+ PIESQF+ LAD LNAEI
Sbjct: 844 LDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLTLLTQRNPIESQFLESLADNLNAEIA 903
Query: 922 LGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDR 981
LGTV N +EA WI YTYLY+RM NP YG++ + + D TL + R LV LD+
Sbjct: 904 LGTVTNVEEAVKWISYTYLYVRMRANPLAYGISHKAYQIDPTLRKHREQLVIEVGRKLDK 963
Query: 982 NNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKY 1041
+++++ ++GYF TDLGR AS+YYI + TI T+NE + ++ + S +EEF
Sbjct: 964 AQMIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNELFDAHKTEGDIFAIVSKAEEFDQ 1023
Query: 1042 VTVRQDEKMELAKLLDR-VPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFIT 1100
+ VR++E EL LL + +E KIN+LLQ YIS+ +++ SL SD ++
Sbjct: 1024 IKVREEEIEELDTLLSNFCELSTPGGVENSYGKINILLQTYISRGEMDSFSLISDSAYVA 1083
Query: 1101 QSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEK 1160
Q+A R++RALFEI L++ W + + LNLSK++ KR+W +PLRQF+ +P IL +LE+
Sbjct: 1084 QNAARIVRALFEIALRKRWPTMTYRLLNLSKVIDKRLWGWASPLRQFSILPPHILTRLEE 1143
Query: 1161 KDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTIT 1220
K ++ D+ E+G ++ +G + + VHQ P +++ A +QPITRTVL+V L+I
Sbjct: 1144 KKLTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQIPSVMMEASIQPITRTVLRVTLSIY 1203
Query: 1221 PDFLWDDKVHGYV-EPFWVIVEDNDGEYILHHEYFM-LKKQYI-EEDHSLNFTVPIYEPL 1277
DF W+D+VHG V EP+W+ VED ++I H EYF+ LKKQ I +E L FT+PI+EPL
Sbjct: 1204 ADFTWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLALKKQVISKEAQLLVFTIPIFEPL 1263
Query: 1278 PPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQ 1337
P QY+IR VSD+WLG++ V ++F+HLILPE++PP TELLDLQPLP+TAL YEALY
Sbjct: 1264 PSQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPHTELLDLQPLPITALGCKAYEALY- 1322
Query: 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397
F HFNP+QTQ+F LY+TD NVL+ APTGSGKT+ +E AI R K + +AVYIA
Sbjct: 1323 NFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKYPTS---KAVYIA 1379
Query: 1398 PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWK 1457
PL+AL +ER DW+++ + LG +V+ELTG+ D+K + K +I++TPEKWD +SR W+
Sbjct: 1380 PLKALVRERMDDWKVRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQ 1439
Query: 1458 QRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDL 1517
R YVQQV++ IIDE+HL+G + GPVLEVIVSR +I+S E +RIV LST+LANA+DL
Sbjct: 1440 NRNYVQQVTILIIDEIHLLGEERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDL 1499
Query: 1518 GEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPA 1577
+W+ GLFNF P VRPVPLE+HIQG ++ RM +M KP F AI H+ KP
Sbjct: 1500 ADWLNIKQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMASMNKPAFQAIRSHSP-AKPV 1558
Query: 1578 LVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637
L+FV SR+ RLTA++L+ + + + D K +L E+E I +++ LK TL G+G
Sbjct: 1559 LIFVSSRRQTRLTALELIAFLATEEDPKQ-WLNMDEREMENIIATVRDSNLKLTLAFGIG 1617
Query: 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTD 1697
H GL++ D++ V LF K++V + +S++ WGV AHLV++ GT+YYDG+ + D
Sbjct: 1618 MHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVD 1677
Query: 1698 YPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFL-------------------- 1737
+P+TD+LQMMG A RP D+ GK VIL H +K++YKKFL
Sbjct: 1678 FPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPFPVESSLLGVLSDHLNA 1737
Query: 1738 ------------------------RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEA 1773
RL NP+YYNL VSH ++ LS L+E ++ +LE
Sbjct: 1738 EIAGGTITSKQDALDYITWTYFFRRLIMNPSYYNLGDVSHDSVNKFLSHLIEKSLIELEL 1797
Query: 1774 SKCIIIEED-MDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQ 1832
S CI I ED + P +G IASYYY+ + T++ F L P+ + LL +L+ A EY
Sbjct: 1798 SYCIEIGEDNRSIEPLTYGRIASYYYLKHQTVKMFKDRLKPECSTEELLSILSDAEEYTD 1857
Query: 1833 LPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQV-GGNLKLDQEEVL 1891
LP+R E+ + L F PH KA+ LLQAH SR + + D + VL
Sbjct: 1858 LPVRHNEDHMNSELAKCLPIESNPHSFDSPHTKAHLLLQAHLSRAMLPCPDYDTDTKTVL 1917
Query: 1892 LSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHF---------- 1941
A R+ QAM+DV ++ GWL L + QMV QG W +DS LL LP+
Sbjct: 1918 DQALRVCQAMLDVAANQGWLVTVLNITNLIQMVIQGRWLKDSSLLTLPNIENHHLHLFKK 1977
Query: 1942 MKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIA-----RFCNRFPNID 1996
K + K SIE++ +L+ + M + +L F + P I+
Sbjct: 1978 WKPIMKGPHARGRTSIESLPELIHACGGKDHVFSSMVESELHAAKTKQAWNFLSHLPVIN 2037
Query: 1997 MSFEVQDSEN--------------------------VRAGEDITLQVVLERDLEGRTEVG 2030
+ V+ S + + A ++ LQV L+R G +
Sbjct: 2038 VGISVKGSWDDLVEGHNELSVSTLTADKRDDNKWIKLHADQEYVLQVSLQRVHFGFHKGK 2097
Query: 2031 P---VYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRV-KLDFAAPAEAGKKTY 2086
P + R+PK+K+EGW+L++G+ +L+A+KRV R V L F P G+ Y
Sbjct: 2098 PESCAVTPRFPKSKDEGWFLILGEVDKRELIALKRVGYIRNHHVASLSFYTPEIPGRYIY 2157
Query: 2087 TLYFMCDSYMGCDQEYAFTVDVKEAG 2112
TLYFM D Y+G DQ+Y ++V +A
Sbjct: 2158 TLYFMSDCYLGLDQQYDIYLNVTQAS 2183
>sp|E9PZJ8|ASCC3_MOUSE Activating signal cointegrator 1 complex subunit 3 OS=Mus musculus
GN=Ascc3 PE=2 SV=1
Length = 2198
Score = 1488 bits (3851), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 806/1935 (41%), Positives = 1173/1935 (60%), Gaps = 140/1935 (7%)
Query: 305 EVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAI 364
E++++L L + LI+ LL+NR+ +V R + + + +++ + L
Sbjct: 263 ELQDELFELLGPEGLDLIEKLLQNRITIV--DRFLNSSSDHKFQVLQDSCKKI---LGEN 317
Query: 365 LDQLHATRATAK-ERQKNLEKSIREEARRL---KDESASDGGRDRRGLVDRDA------- 413
+ + T + E++K L K R E +R+ + ++ DG G++ D
Sbjct: 318 SKPNYGCQVTIQSEQEKQLMKQYRREEKRIARREKKAGEDGEVSGEGVLPFDPKELRIQR 377
Query: 414 --------DGGWLGQRQLLDLDTLAF----------QQGGLFMANRKCDLPEGSQRFTNK 455
+ LG+++ ++ + + + ++ F+A K LPEG QR K
Sbjct: 378 EHALLNARNAPILGRQRDVEFEKIRYPHVYDSQAQARETSAFIAGAKMILPEGIQRENTK 437
Query: 456 GYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNIL 515
YEE+ +P + P+ EK + I ++ E Q AFKGM +LNR+QS V+++A ++ +N+L
Sbjct: 438 LYEEVRIPYGEPMPVGFEEKPVYIKDLDEVGQLAFKGMKRLNRIQSIVFETAYNTNENML 497
Query: 516 LCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ 575
+CAPTGAGKTN+A+LTIL ++ + + G + +KIVYVAPMKAL AE+ S RL+
Sbjct: 498 ICAPTGAGKTNIAMLTILHEIRQHFHQ-GVIKKNEFKIVYVAPMKALAAEMTNYFSKRLE 556
Query: 576 MYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS-GDRTYTQLVKLLIIDEIHL 634
+ V+EL+GD L++ +I TQ++VTTPEKWD++TRKS GD +Q+VKLLI+DE+HL
Sbjct: 557 PLGIVVKELTGDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVKLLILDEVHL 616
Query: 635 LHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNS 694
LH++RGPVLESIVART+RQ+E+T+ IR++GLSATLPNY DVA FL VN GLFYFD
Sbjct: 617 LHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPYIGLFYFDGR 676
Query: 695 YRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVHSRKETAKTARAI 753
+RPVPL Q ++GI+ +Q+ M+++CYE V+ V HQV++FVH+R T +TA ++
Sbjct: 677 FRPVPLGQTFLGIKSTNKMQQLNNMDEVCYESVLKQVKAGHQVMVFVHARNATVRTAMSL 736
Query: 754 RDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVE 813
+ A + + FL + ++ +++L GF+IHHAGM R DR LVE
Sbjct: 737 IERAKNSGQISCFLPTEGPEYGHALKQVQKSRNKQVRELFSDGFSIHHAGMLRQDRNLVE 796
Query: 814 DLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873
+LF +GH++VLV TATLAWGVNLPAH V+IKGTQIY ++G++ +L LD+MQ+ GRAGR
Sbjct: 797 NLFSNGHIKVLVCTATLAWGVNLPAHAVVIKGTQIYAAKRGSFVDLGILDVMQIFGRAGR 856
Query: 874 PQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACN 933
PQ+D +GEGIIIT H +L +YLSL+ QQ PIESQF+ LAD LNAEI LGTV N +EA
Sbjct: 857 PQFDKFGEGIIITTHDKLSHYLSLLTQQNPIESQFLESLADNLNAEIALGTVTNVEEAVR 916
Query: 934 WIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGY 993
W+ YTYLY+RM NP YG++ + + D TL + R L+ LD+ +++++ ++GY
Sbjct: 917 WMSYTYLYVRMRANPLAYGISHKAYQIDPTLRKHREQLLIEVGQKLDKAKMIRFEERTGY 976
Query: 994 FQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELA 1053
F TDLGR AS++YI + TI T+NE + ++ + S +EEF + VR++E EL
Sbjct: 977 FSSTDLGRTASHFYIKYNTIETFNELFDAHKTEGDIFAIVSKAEEFDQIKVREEEIEELD 1036
Query: 1054 KLLDR-VPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFE 1112
LL+ + +E KIN+LLQ YIS+ +++ SL SD ++ Q+A R++RALFE
Sbjct: 1037 ALLNNFCELSAPGGVENSYGKINILLQTYISRGEMDSFSLISDSAYVAQNAARIVRALFE 1096
Query: 1113 IVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLS 1172
I L++ W + + LNLSK++ KR+W +PLRQF+ +P IL +LE+K+ ++ D+
Sbjct: 1097 IALRKRWPTMTYRLLNLSKVIDKRLWGWASPLRQFSVLPPHILTRLEEKNLTVDKLKDMR 1156
Query: 1173 PQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGY 1232
E+G ++ +G + + VHQ P + + A +QPITRTVL+V L I PDF W+D+VHG
Sbjct: 1157 KDEIGHILHHVNIGLKVKQCVHQIPSVTMEASIQPITRTVLRVSLNIHPDFSWNDQVHGT 1216
Query: 1233 V-EPFWVIVEDNDGEYILHHEYFM-LKKQYI-EEDHSLNFTVPIYEPLPPQYFIRVVSDK 1289
V EP+W+ VED ++I H EYF+ LKKQ I +E L FT+PI+EPLP QY+IR VSD+
Sbjct: 1217 VGEPWWIWVEDPTNDHIYHSEYFLALKKQVINKEAQLLVFTIPIFEPLPSQYYIRAVSDR 1276
Query: 1290 WLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQV 1349
WLG++ V ++F+HLILPE++PP TELLDLQPLP+TAL YEALY F HFNP+QTQ+
Sbjct: 1277 WLGAEAVCIINFQHLILPERHPPHTELLDLQPLPITALGCKAYEALY-NFSHFNPVQTQI 1335
Query: 1350 FTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409
F LY+TD NVL+ APTGSGKT+ +E AI R K + +AVYIAPL+AL +ER D
Sbjct: 1336 FHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKYPTS---KAVYIAPLKALVRERMDD 1392
Query: 1410 WEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFI 1469
W+I+ + LG +V+ELTG+ D+K + K +I++TPEKWD +SR W+ R YVQQV++ I
Sbjct: 1393 WKIRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRSYVQQVNILI 1452
Query: 1470 IDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLF 1529
IDE+HL+G + GPVLEVIVSR +I+S E +RIV LST+LANA+DL +W+ GLF
Sbjct: 1453 IDEIHLLGEERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLNIKQMGLF 1512
Query: 1530 NFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRL 1589
NF P VRPVPLE+HIQG ++ RM +M KP F AI H+ KP L+FV SR+ RL
Sbjct: 1513 NFRPSVRPVPLEVHIQGFPGQHYCPRMASMNKPAFQAIRSHSP-AKPVLIFVSSRRQTRL 1571
Query: 1590 TAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQE 1649
TA++L+ + + + D K +L +E++ I +++ LK TL G+G H GL++ D++
Sbjct: 1572 TALELIAFLATEEDPKQ-WLNMDEQEMDNIIGTVRDSNLKLTLAFGIGMHHAGLHERDRK 1630
Query: 1650 VVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGH 1709
V LF K++V + +S++ WGV AHLV++ GT+YYDG+ + D+P+TD+LQMMG
Sbjct: 1631 TVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGR 1690
Query: 1710 ASRPLLDNSGKCVILCHAPRKEYYKKFL-------------------------------- 1737
A RP D+ GK VIL H +K++YKKFL
Sbjct: 1691 AGRPQFDDQGKAVILVHDIKKDFYKKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQD 1750
Query: 1738 ------------RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEED-MD 1784
RL NP+YY+L VS ++ LS L+ ++ +LE S CI + ED
Sbjct: 1751 AMDYITWTYFFRRLIMNPSYYSLGDVSQDSINKFLSHLIGQSLVELELSHCIEVGEDNRT 1810
Query: 1785 LSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVR 1844
+ P G IASYYY+ + T++ F L P+ + LL +L+ A EY LP+R E+
Sbjct: 1811 IEPLTCGRIASYYYLKHKTVKMFKDRLKPECSTEELLSILSDAEEYTDLPVRHNEDHTNN 1870
Query: 1845 RLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQV-GGNLKLDQEEVLLSASRLLQAMVD 1903
L F PH KA+ LLQAH SR + + D + VL A R+ QAM+D
Sbjct: 1871 ELAKCLPIELNPHSFDSPHTKAHLLLQAHLSRAMLPCPDYDTDTKTVLDQALRVCQAMLD 1930
Query: 1904 VISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLP-------HFMKDLAKRCQENPGK- 1955
V +S GWL L + QMV QG W +DS LL +P H + + + K
Sbjct: 1931 VAASQGWLVTVLNITHLIQMVIQGRWLKDSSLLTIPNIEQHHLHLFRKWKPPVKSSHAKC 1990
Query: 1956 --SIETVFDLVEMEDDERRELLQMSDVQLLDIA-----RFCNRFPNIDMSFEVQDS---- 2004
SIE + +L+ + + M + +L F +R P I++ V+ S
Sbjct: 1991 RTSIECLPELIHACEGKDHVFSSMVEKELQPAKTKQAWNFLSRLPVINVGISVKGSWDDL 2050
Query: 2005 ------------------EN----VRAGEDITLQVVLERDL----EGRTEVGPVYSNRYP 2038
EN + A ++ LQV L+R +G+ E V + R+P
Sbjct: 2051 VEGHNELSISTLTADKRDENKWIKLHADQEYVLQVSLQRVHFGLPKGKHENHAV-TPRFP 2109
Query: 2039 KAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSR-VKLDFAAPAEAGKKTYTLYFMCDSYMG 2097
K K+EGW+L++G+ +L+A+KRV R + F P G+ +TLY M D Y+G
Sbjct: 2110 KLKDEGWFLILGEVDKRELMAVKRVGFVRTHHDASISFFTPETPGRYIFTLYLMSDCYLG 2169
Query: 2098 CDQEYAFTVDVKEAG 2112
DQ+Y ++V +A
Sbjct: 2170 LDQQYDIYLNVIKAN 2184
>sp|F1LPQ2|ASCC3_RAT Activating signal cointegrator 1 complex subunit 3 OS=Rattus
norvegicus GN=Ascc3 PE=2 SV=1
Length = 2197
Score = 1468 bits (3801), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 773/1783 (43%), Positives = 1098/1783 (61%), Gaps = 113/1783 (6%)
Query: 430 AFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPA 489
A ++ F+A K LPEG QR K YEE+ +P + P+ EK + I ++ E Q A
Sbjct: 412 AARETSAFIAGAKMILPEGIQRENTKLYEEVRIPYSEPMPVGFEEKPVYIQDLDEVGQLA 471
Query: 490 FKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHS 549
FKGM +LNR+QS V+ +A ++ +N+L+CAPTGAGKTN+A+LT+L ++ + + G +
Sbjct: 472 FKGMKRLNRIQSIVFDTAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQHFHQ-GVLKKN 530
Query: 550 NYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWD 609
+KIVYVAPMKAL AE+ S RL+ + V+EL+GD L++ +I TQ++VTTPEKWD
Sbjct: 531 EFKIVYVAPMKALAAEMTNYFSKRLEPLGIVVKELTGDMQLSKSEILRTQMLVTTPEKWD 590
Query: 610 IITRKS-GDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSA 668
++TRKS GD +Q+VKLLI+DE+HLLH++RGPVLESIVART+RQ+E+T+ IR++GLSA
Sbjct: 591 VVTRKSVGDVALSQIVKLLILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSA 650
Query: 669 TLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVV 728
TLPNY DVA FL VN GLFYFD +RPVPL Q ++GI+ +Q+ M+++CYE V+
Sbjct: 651 TLPNYLDVATFLHVNPYIGLFYFDGRFRPVPLGQTFLGIKSANKMQQLNNMDEVCYESVL 710
Query: 729 A-VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSN 787
V HQV++FVH+R T +TA ++ + A + + FL ++
Sbjct: 711 KQVKAGHQVMVFVHARNATVRTAMSLIERAKNSGQISCFLPTQGPEYGHALKQVQKSRNK 770
Query: 788 DLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQ 847
+++L GF+IHHAGM R DR LVE+LF +GH++VLV TATLAWGVNLPAH VIIKGTQ
Sbjct: 771 QVRELFSDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQ 830
Query: 848 IYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQ 907
IY ++G++ +L LD+MQ+ GRAGRPQ+D +GEGIIIT H +L +YLSL+ QQ PIESQ
Sbjct: 831 IYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLSLLTQQNPIESQ 890
Query: 908 FVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGER 967
F+ LAD LNAEI LGTV N +EA W+ YTYLY+RM NP YG++ + + D TL +
Sbjct: 891 FLESLADNLNAEIALGTVTNVEEAVKWMSYTYLYVRMRANPLAYGISHKAYQMDPTLRKH 950
Query: 968 RADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDI 1027
R L+ LD+ +++++ ++GYF TDLGR AS+YYI + TI T+NE +
Sbjct: 951 REQLLIEVGQKLDKARMIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNELFDAHKTEG 1010
Query: 1028 ELCRLFSLSEEFKYVTVRQDEKMELAKLLDR-VPIPVKESLEEPSAKINVLLQAYISQLK 1086
++ + S +EEF + VR++E EL LL+ + +E KIN+LLQ YIS+ +
Sbjct: 1011 DIFAIVSKAEEFDQIKVREEEIEELDALLNNFCELSAPGGVENSYGKINILLQTYISRGE 1070
Query: 1087 LEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQ 1146
++ SL SD ++ Q+A R++RALFEI L++ W + + LNLSK++ KR+W +PLRQ
Sbjct: 1071 MDSFSLISDSAYVAQNAARIVRALFEIALRKRWPTMTYRLLNLSKVIDKRLWGWASPLRQ 1130
Query: 1147 FNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQ 1206
F+ +P IL +LE+K+ ++ D+ E+G ++ +G + + VHQ P + + A +Q
Sbjct: 1131 FSVLPPHILTRLEEKNLTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQIPSVTMEASIQ 1190
Query: 1207 PITRTVLKVELTITPDFLWDDKVHGYV-EPFWVIVEDNDGEYILHHEYFM-LKKQYI-EE 1263
PITRTVL+V L I PDF W+D+VHG V EP+W+ VED ++I H EYF+ LKKQ I +E
Sbjct: 1191 PITRTVLRVSLNIYPDFSWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLALKKQVINKE 1250
Query: 1264 DHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLP 1323
L FT+PI+EPLP QY+IR VSD+WLG++ V ++F+HLILPE++PP TELLDLQPLP
Sbjct: 1251 AQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPHTELLDLQPLP 1310
Query: 1324 VTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQ 1383
VTAL YEALY F HFNP+QTQ+F LY+TD NVL+ APTGSGKT+ +E AI R
Sbjct: 1311 VTALGCKAYEALY-NFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFN 1369
Query: 1384 KASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIII 1443
K + +AVYIAPL+AL +ER DW+I+ + LG +V+ELTG+ D+K + K +I+
Sbjct: 1370 KYPTS---KAVYIAPLKALVRERMDDWKIRIEEKLGKKVIELTGDVTPDMKSIAKADLIV 1426
Query: 1444 STPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIR 1503
+TPEKWD +SR W+ R YVQQV++ IIDE+HL+G + GPVLEVIVSR +I+S E +R
Sbjct: 1427 TTPEKWDGVSRSWQNRSYVQQVNILIIDEIHLLGEERGPVLEVIVSRTNFISSHTEKPVR 1486
Query: 1504 IVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPT 1563
IV LST+LANA+DL +W+ GLFNF P VRPVPLE+HIQG ++ RM +M KP
Sbjct: 1487 IVGLSTALANARDLADWLNIKQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMASMNKPA 1546
Query: 1564 FTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNI 1623
F H ++P L+ +P R +T ++L+ + + + D K +L +E+E I +
Sbjct: 1547 FQESHTHCP-DRPCLL-LPERMLSSMTKLELIAFLATEEDPKQ-WLNMDEQEMENIIATV 1603
Query: 1624 QEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVM 1683
++ LK TL G+G H GL++ D++ V LF K++V + +S++ WGV AHLV++
Sbjct: 1604 RDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIK 1663
Query: 1684 GTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFL------ 1737
GT+YYDG+ + D+P+TD+LQMMG A RP D+ GK VIL H +K++YKKFL
Sbjct: 1664 GTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPFPV 1723
Query: 1738 --------------------------------------RLTQNPNYYNLQGVSHRHLSDH 1759
RL NP+YYNL VS ++
Sbjct: 1724 ESSLLGVLSDHLNAEIAGGTITSKQDALDYITWTYFFRRLIMNPSYYNLGDVSQDAINKF 1783
Query: 1760 LSELVENTISDLEASKCIIIEED-MDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMK 1818
LS L+ ++ +LE S CI + ED + P G IASYYY+ + T++ F L P+ +
Sbjct: 1784 LSHLIGQSLVELELSHCIEVGEDNRSIEPLTCGRIASYYYLKHKTVKMFKDRLKPECSTE 1843
Query: 1819 GLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQ 1878
LL +L+ A EY LP+R E+ L F PH KA+ LLQAH SR
Sbjct: 1844 ELLSILSDAEEYTDLPVRHNEDHTNNELAKCLPIELNPHSFDSPHTKAHLLLQAHLSRAM 1903
Query: 1879 V-GGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQ 1937
+ + D + VL A R+ QAM+DV +S GWL L + QMV QG W +DS LL
Sbjct: 1904 LPCPDYDTDTKTVLDQALRVCQAMLDVAASQGWLVTTLNITHLIQMVIQGRWLKDSSLLT 1963
Query: 1938 LPHF--------------MKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLL 1983
+P+ +K +C+ SIE + +L+ + + M + +L
Sbjct: 1964 IPNIEQHHLHLFRKWKPPVKGPHAKCR----TSIECLPELIHACEGKEHVFSSMVEKELQ 2019
Query: 1984 DIA-----RFCNRFPNIDMSFEVQDS----------------------EN----VRAGED 2012
F + P I++ V+ S EN + A +
Sbjct: 2020 PAKTKQAWNFLSHLPVINVGISVKGSWDDSVEGHNELSISTLTADKRDENTWIKLHADQQ 2079
Query: 2013 ITLQVVLER---DLEGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKS 2069
LQV L+R + + R+PK K+EGW+L++G+ +L+A+KRV R
Sbjct: 2080 YVLQVSLQRVHFEFHKVKHESHAVTPRFPKLKDEGWFLILGEVDKRELVAVKRVGFVRTH 2139
Query: 2070 R-VKLDFAAPAEAGKKTYTLYFMCDSYMGCDQEYAFTVDVKEA 2111
+ F P G+ +TLY M D Y+G DQ+Y ++V +A
Sbjct: 2140 HEASISFFTPEAPGRYIFTLYLMSDCYLGLDQQYDIFLNVTKA 2182
>sp|P32639|BRR2_YEAST Pre-mRNA-splicing helicase BRR2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BRR2 PE=1 SV=2
Length = 2163
Score = 1432 bits (3706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 843/2208 (38%), Positives = 1290/2208 (58%), Gaps = 177/2208 (8%)
Query: 18 YEYRANSSLVLTTDSRPRDTHE------PTGEPESLWGKIDPRSFGDRAFRGRPPELEE- 70
Y Y S+ VL D R +T + +P+S+ G+I + G L+E
Sbjct: 17 YRYDEMSNKVLKVDKRFMNTSQNPQRDAEISQPKSMSGRISAKDMGQGLCNNINKGLKEN 76
Query: 71 -----KLKKSAKKKKERDPDADAAAASEGT--YQPKTKETRAAYEAMLSVIQQQLGGQ-P 122
K KSA KK + + ++S+ Y PK YE +L + + LG P
Sbjct: 77 DVAVEKTGKSASLKKIQQHNTILNSSSDFRLHYYPKDPSNVETYEQILQWVTEVLGNDIP 136
Query: 123 LNIVSGAADEILAVLK----NDAVKNPDKKKEIEKLLN-PIPNHVFDQLVSIGKLITDYQ 177
+++ G AD + LK N+ ++K++I+ L I + F++LV + K ITDY+
Sbjct: 137 HDLIIGTADIFIRQLKENEENEDGNIEERKEKIQHELGINIDSLKFNELVKLMKNITDYE 196
Query: 178 DAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEE------------SDLDMVQEEDEE 225
D + A VA+ ++ DEEE +++ +++DEE
Sbjct: 197 THPDNSNKQA------------VAILADDEKSDEEEVTEMSNNANVLGGEINDNEDDDEE 244
Query: 226 EEEDVAEPNASGAMQMG-GGIDDD----DESGDANEGMSLNVQDIDAYWLQRKISQAFDQ 280
+ + E N+ + I++D +S +N S+ + ID ++LQRK+
Sbjct: 245 YDYNDVEVNSKKKNKRALPNIENDIIKLSDSKTSNIE-SVPIYSIDEFFLQRKLRSELGY 303
Query: 281 QIDPQQCQKLAEEVLKILA--EGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRL 338
+ D Q L+E++L + E + +E KL+ L+F+ SL +F+L+NR + W RL
Sbjct: 304 K-DTSVIQDLSEKILNDIETLEHNPVALEQKLVDLLKFENISLAEFILKNRSTIFWGIRL 362
Query: 339 ARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESA 398
A++ + E IE+ M+ G + + T + +E ++ EA+R K +
Sbjct: 363 AKSTENEIPNLIEK-MVAKGLNDLVEQYKFRETTHSKRELDSGDDQPQSSEAKRTKFSNP 421
Query: 399 SDGGRDRRGLVDRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYE 458
+ ++DL+ + F + M K LPEGS + Y+
Sbjct: 422 AIP--------------------PVIDLEKIKFDESSKLMTVTKVSLPEGSFKRVKPQYD 461
Query: 459 EIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKG--MTQLNRVQSRVYKSALSSADNILL 516
EIH+PA +D +L +I+ +P+W Q AF T LN +QS+V+ +A N+L+
Sbjct: 462 EIHIPAPSKPVID--YELKEITSLPDWCQEAFPSSETTSLNPIQSKVFHAAFEGDSNMLI 519
Query: 517 CAPTGAGKTNVAVLTILQQLALNRN-DDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ 575
CAPTG+GKTN+A+LT+L+ L+ + N N S +KIVY+AP+KALV E V RL
Sbjct: 520 CAPTGSGKTNIALLTVLKALSHHYNPKTKKLNLSAFKIVYIAPLKALVQEQVREFQRRLA 579
Query: 576 MYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635
+KV EL+GD L+R+QI+ETQ++V+TPEKWDI TR S + +LV+LLIIDEIHLL
Sbjct: 580 FLGIKVAELTGDSRLSRKQIDETQVLVSTPEKWDITTRNSNNLAIVELVRLLIIDEIHLL 639
Query: 636 HDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSY 695
HD+RGPVLESIVART + +E+ R++GLSATLPNYEDV FLRV E GLFYFD+S+
Sbjct: 640 HDDRGPVLESIVARTFWASKYGQEYPRIIGLSATLPNYEDVGRFLRVPKE-GLFYFDSSF 698
Query: 696 RPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVV-AVAGKHQVLIFVHSRKETAKTARAIR 754
RP PLSQQ+ GI+ + L++ + MND CYEKV+ ++ +Q+++FVHSRKET++TA ++
Sbjct: 699 RPCPLSQQFCGIKERNSLKKLKAMNDACYEKVLESINEGNQIIVFVHSRKETSRTATWLK 758
Query: 755 DTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVED 814
+ E + + K D+ S++IL++ V L+ L+ G HHAG+TR DR L ED
Sbjct: 759 NKFAEENITHKLTKNDAGSKQILKTEAANVLDPSLRKLIESGIGTHHAGLTRSDRSLSED 818
Query: 815 LFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRP 874
LF DG +QVLV TATLAWGVNLPAHTVIIKGT +Y+PEKG+W +LSP D++QMLGRAGRP
Sbjct: 819 LFADGLLQVLVCTATLAWGVNLPAHTVIIKGTDVYSPEKGSWEQLSPQDVLQMLGRAGRP 878
Query: 875 QYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNW 934
+YD++GEGIIIT S ++YYLS++NQQLPIESQFVSKL D LNAE+V G ++ +A NW
Sbjct: 879 RYDTFGEGIIITDQSNVQYYLSVLNQQLPIESQFVSKLVDNLNAEVVAGNIKCRNDAVNW 938
Query: 935 IGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYF 994
+ YTYLY+RML +P LY + P++ D L + R LVH+A IL LV YD ++
Sbjct: 939 LAYTYLYVRMLASPMLYKV-PDI-SSDGQLKKFRESLVHSALCILKEQELVLYDAENDVI 996
Query: 995 QVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAK 1054
+ TDLG IAS +YI+H ++ YN L I+L R+FS+SEEFKYV+VR +EK EL +
Sbjct: 997 EATDLGNIASSFYINHASMDVYNRELDEHTTQIDLFRIFSMSEEFKYVSVRYEEKRELKQ 1056
Query: 1055 LLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIV 1114
LL++ PIP++E +++P AK+NVLLQ+Y SQLK EG +L SD+VFI Q+AGRLLRA+FEI
Sbjct: 1057 LLEKAPIPIREDIDDPLAKVNVLLQSYFSQLKFEGFALNSDIVFIHQNAGRLLRAMFEIC 1116
Query: 1115 LKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDL-SP 1173
LKRGW LNL K T +MW PLRQF P E++ +LE W Y L +P
Sbjct: 1117 LKRGWGHPTRMLLNLCKSATTKMWPTNCPLRQFKTCPVEVIKRLEASTVPWGDYLQLETP 1176
Query: 1174 QELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYV 1233
E+G IR K G+ ++ + +FPK+ + + QPITR+V++ + I D++WD VHG +
Sbjct: 1177 AEVGRAIRSEKYGKQVYDLLKRFPKMSVTCNAQPITRSVMRFNIEIIADWIWDMNVHGSL 1236
Query: 1234 EPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYE----PLPPQYFIRVVSDK 1289
EPF +++ED DG+ IL+++ + + + +L+FT + + LPP +F+ ++S+
Sbjct: 1237 EPFLLMLEDTDGDSILYYDVLFITPDIVGHEFTLSFTYELKQHNQNNLPPNFFLTLISEN 1296
Query: 1290 WLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQV 1349
W S+ +PVSF LP+K+PPPT LL+ + + L N + +++ FK FN IQ+QV
Sbjct: 1297 WWHSEFEIPVSFNGFKLPKKFPPPTPLLENISISTSELGNDDFSEVFE-FKTFNKIQSQV 1355
Query: 1350 FTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409
F LYN++D+V V + G+GKT +E A+L NH + ++ RAVYI P D
Sbjct: 1356 FESLYNSNDSVFVGSGKGTGKTAMAELALL-NHWRQNKG---RAVYINPSGEKIDFLLSD 1411
Query: 1410 WEIKFGQGLGMRVV-ELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLF 1468
W +F G +++ +L + +++LKLL K ++++TP +++ LSRRW+QRK +Q + L
Sbjct: 1412 WNKRFSHLAGGKIINKLGNDPSLNLKLLAKSHVLLATPVQFELLSRRWRQRKNIQSLELM 1471
Query: 1469 IIDELHLIG-GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHG 1527
I D+ H I G G V E ++SRM +IA+Q+E KIR V LS LANA+D GEW G T
Sbjct: 1472 IYDDAHEISQGVYGAVYETLISRMIFIATQLEKKIRFVCLSNCLANARDFGEWAGMTKSN 1531
Query: 1528 LFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYV 1587
++NF P R PLEI+IQ + +M + F A A N + VF+PSRK
Sbjct: 1532 IYNFSPSERIEPLEINIQSFKDVEHISFNFSMLQMAFEASAAAAGNRNSSSVFLPSRKDC 1591
Query: 1588 RLTAVDLMTYS-SMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKT 1646
A M +S +++ D L E++ P+I+ + + L+A L+HGVG L++G+
Sbjct: 1592 MEVASAFMKFSKAIEWD----MLNVEEEQIVPYIEKLTDGHLRAPLKHGVGILYKGMASN 1647
Query: 1647 DQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQM 1706
D+ +V L+E G + V ++S C V+++GT YDG E+ + Y + +LL+M
Sbjct: 1648 DERIVKRLYEYGAVSVLLISKD-CSAFACKTDEVIILGTNLYDGAEHKYMPYTINELLEM 1706
Query: 1707 MGHASRPLLDN-SGKCVILCHAPRKEYYKKFL---------------------------- 1737
+G AS D+ +GK +IL K YYKKFL
Sbjct: 1707 VGLASGN--DSMAGKVLILTSHNMKAYYKKFLIEPLPTESYLQYIIHDTLNNEIANSIIQ 1764
Query: 1738 ----------------RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEE 1781
R+ NP+YY ++ S +S LS LVE ++DL S I I++
Sbjct: 1765 SKQDCVDWFTYSYFYRRIHVNPSYYGVRDTSPHGISVFLSNLVETCLNDLVESSFIEIDD 1824
Query: 1782 DMD----------------LSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLA 1825
+S ++G+IAS+Y +S+ TI+ F SSL+ + +K +L VL+
Sbjct: 1825 TEAEVTAEVNGGDDEATEIISTLSNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLS 1884
Query: 1826 SASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDP---HVKANALLQAHFSRQQVGGN 1882
+A E+ +P+R G+ ++ +L +R P+ T K LLQA+FSR ++ +
Sbjct: 1885 TAVEFESVPLRKGDRALLVKL--SKRLPLRFPEHTSSGSVSFKVFLLLQAYFSRLELPVD 1942
Query: 1883 LKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFM 1942
+ D +++L L+ +VD++S+NG+L+ A AM+++QM+ QG+W+ D+ L Q+PHF
Sbjct: 1943 FQNDLKDILEKVVPLINVVVDILSANGYLN-ATTAMDLAQMLIQGVWDVDNPLRQIPHFN 2001
Query: 1943 KDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQ 2002
+ ++C+E ++ETV+D++ +ED+ER E+L ++D QL +A F N +PN+++++ +
Sbjct: 2002 NKILEKCKE---INVETVYDIMALEDEERDEILTLTDSQLAQVAAFVNNYPNVELTYSLN 2058
Query: 2003 DSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKR 2062
+S+++ +G + + L RD+E E V S +YP K E WWLV+G+ +L AIK+
Sbjct: 2059 NSDSLISGVKQKITIQLTRDVE--PENLQVTSEKYPFDKLESWWLVLGEVSKKELYAIKK 2116
Query: 2063 VSLQRKS-RVKLDFAAPAEAGKKTYTLYFMCDSYMGCDQEYAFTVDVK 2109
V+L +++ + +L+F P +GK T++ +CDSY+ D+E +F ++VK
Sbjct: 2117 VTLNKETQQYELEFDTPT-SGKHNLTIWCVCDSYLDADKELSFEINVK 2163
>sp|Q54G57|HELC1_DICDI Activating signal cointegrator 1 complex subunit 3 OS=Dictyostelium
discoideum GN=ascc3 PE=3 SV=1
Length = 2195
Score = 1412 bits (3655), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 733/1759 (41%), Positives = 1096/1759 (62%), Gaps = 111/1759 (6%)
Query: 442 KCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISE-MPEWAQPAFKGMTQLNRVQ 500
K LP+G+ R + E+ VP KP NEKLI+I E + E ++ AF + +LNR+Q
Sbjct: 428 KIALPKGTVRTEKTTHTEVMVPYSLAKPFADNEKLIEIGESIAEISRAAFGSIKKLNRIQ 487
Query: 501 SRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMK 560
SRV++SA S +NIL+ APTGAGKTN+A+LTIL ++ N N G + N+KI+Y+AP+K
Sbjct: 488 SRVFESAYKSNENILISAPTGAGKTNIALLTILHEIESNINPYGYLDKDNFKIIYIAPLK 547
Query: 561 ALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTY 620
AL +E+V SN L+ + +EL+GD LT+++++ETQIIVTTPEKWD+ITRKS D
Sbjct: 548 ALASEMVEKFSNSLKYLGIVSKELTGDMQLTQKELKETQIIVTTPEKWDVITRKSSDVAL 607
Query: 621 TQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFL 680
T+LV+L+IIDEIHLLH+ RGPVLE IVART+RQ+ETT+E IR+VGLSATLPNY+DVA F+
Sbjct: 608 TKLVRLIIIDEIHLLHEERGPVLECIVARTLRQVETTQEMIRIVGLSATLPNYKDVARFI 667
Query: 681 RVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQL-MNDLCYEKV-VAVAGKHQVLI 738
R G +FD+SYRPVPL+Q +IG++ + + + MN LCYE++ ++ HQV+I
Sbjct: 668 RAP-ASGTHFFDSSYRPVPLTQNFIGVKDNQGIMVMKNNMNQLCYERLEKSLKEGHQVMI 726
Query: 739 FVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFA 798
FVHSRK+T K+A + D A E RF E+ + + VKS +++ L +G +
Sbjct: 727 FVHSRKDTVKSAEILSDMAKEKHF--RFSNEEPSFGA--KKEFEKVKSKEIRSLFQHGIS 782
Query: 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTE 858
+HHAG+ R DR +VE F +G ++VLV TATLAWGVNLPAHTVIIKGTQ+YN + G + +
Sbjct: 783 VHHAGLLRSDRNVVEKYFANGTIKVLVCTATLAWGVNLPAHTVIIKGTQVYNAKNGGFMD 842
Query: 859 LSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNA 918
L D+MQ+ GRAGRPQ+D+ GEG ++T +L +YLSLM+ +PIES+F++ L D LNA
Sbjct: 843 LGISDVMQIFGRAGRPQFDTSGEGFLLTSKDKLDHYLSLMSSSMPIESKFITNLEDHLNA 902
Query: 919 EIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATI 978
EIVLGTV N EA NW+ YTYL+IRML+NP +YG+ +D L E + +++ AA
Sbjct: 903 EIVLGTVSNVNEAVNWLSYTYLFIRMLQNPLVYGIPSSQRSKDPQLEEFKREIIIRAAKK 962
Query: 979 LDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEE 1038
L++ + ++D +S +T+LGRIAS+YYI H +I T+NE L +G ++ + S S E
Sbjct: 963 LEQCKMTRFDEQSENLGMTELGRIASHYYIKHPSIETFNEMLNDQLGQDQVLNILSNSSE 1022
Query: 1039 FKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVF 1098
F+ +T+R++E EL KL + + ++ + +K+ LLQA+ S+ ++G SL SD +
Sbjct: 1023 FENITLREEESTELDKLAEN-QCYYELTVLDSHSKVKCLLQAFFSRANIDGFSLVSDSNY 1081
Query: 1099 ITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKL 1158
Q++ R+LR LFEI LK+GW +++ L+L KMV ++W ++PLRQ + + + K+
Sbjct: 1082 TVQNSSRILRGLFEISLKKGWCTVSKTILDLCKMVDHQLWHFESPLRQAKVLSLDTIRKI 1141
Query: 1159 EKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELT 1218
E++D+ ER D+ EL ++ + +T K QFP+L VQPIT ++++ +T
Sbjct: 1142 EERDWTPERICDMEIGELSFVLGNQLIAKTTRKIAQQFPQLDFEIQVQPITANIIRINMT 1201
Query: 1219 ITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFT--VPIYEP 1276
+ P F W+DK+HG +PFW+ V+DN+ +YI H EYFML K+ + + T +P+ P
Sbjct: 1202 LIPMFSWNDKMHGDSQPFWIWVQDNESQYIFHSEYFMLTKKIYNQTEPITLTCIIPLPNP 1261
Query: 1277 LPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEK-YPPPTELLDLQPLPVTALRNPLYEAL 1335
+P Q+F+ +SD+WLGS+ + +SFRHL+LP++ TELLDLQPLP AL+N +E+L
Sbjct: 1262 MPSQFFLHYISDRWLGSEGIREISFRHLVLPQQDRVVNTELLDLQPLPKEALKNKDFESL 1321
Query: 1336 YQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVY 1395
++ F HFNPIQTQVF LY T++NVL+ +PTGSGKTIC+E A+ + + M+ VY
Sbjct: 1322 FK-FSHFNPIQTQVFHTLYYTNNNVLLGSPTGSGKTICAELAMFKVFRDEPH---MKVVY 1377
Query: 1396 IAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRR 1455
IAPL+AL +ER DW++KF + LG ++VELTG+ ++ L+ I+ +TPEKWD +SR
Sbjct: 1378 IAPLKALVRERMNDWKVKFQEKLGKKLVELTGDYTPNMIALQNADIVTTTPEKWDGISRN 1437
Query: 1456 WKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAK 1515
WK R YV VSL IIDE+HLIG GP+LEVIVSRM+ I+ Q IR+V LST++ANA
Sbjct: 1438 WKNRSYVTSVSLLIIDEIHLIGELRGPILEVIVSRMKLISKQTGVNIRVVGLSTAMANAI 1497
Query: 1516 DLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEK 1575
DL EW+G GLFNF P RPVP+E+HIQG N+ RMQ M KP+F AI ++ +K
Sbjct: 1498 DLSEWMGIDRVGLFNFRPSCRPVPIEVHIQGFQGKNYCPRMQTMNKPSFAAIATYSP-KK 1556
Query: 1576 PALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAE--EVEPFIDNIQEEMLKATLR 1633
P L+FV SR+ RLTA+DL++Y +D D L W + ++EP + ++++ L+ TL
Sbjct: 1557 PVLIFVSSRRQTRLTALDLISYLVVDNDP----LQWIQKGFDIEPTLARVKDQHLRHTLS 1612
Query: 1634 HGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQEN 1693
G+G H GLN D+ +V +LF KI++ + +S++ WGV L AHLV++ GT+Y+DG+
Sbjct: 1613 FGIGMHHAGLNDGDRTIVESLFGENKIQILISTSTLAWGVNLPAHLVIIKGTEYFDGKTK 1672
Query: 1694 AHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFL---------------- 1737
+ D+P+TD+LQM+G A RP D GK +++ H P+K++YKKFL
Sbjct: 1673 RYVDFPLTDVLQMIGRAGRPQFDKEGKAMVMVHEPKKQFYKKFLYDPFPVESHLKDFLHD 1732
Query: 1738 ----------------------------RLTQNPNYYNLQGVSHRHLSDHLSELVENTIS 1769
RL +P+YY L+ S ++ +LS+L+++T++
Sbjct: 1733 HLNAEIVSGTIQSKQGAINYLVNTFFFRRLVVSPSYYGLEDNSVEAVNQYLSDLLDSTLA 1792
Query: 1770 DLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASE 1829
DLE S CI I E ++ P + G IAS+YY++Y T++ FS ++ + +K LL VL+ A+E
Sbjct: 1793 DLEQSSCIEINEYDEIIPMSMGKIASFYYLNYKTVQNFSDNIKRDSDIKTLLRVLSDAAE 1852
Query: 1830 YAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQVG-GNLKLDQE 1888
Y++ P+R EE + + L ++ + + D H K + LLQAHF R + + D +
Sbjct: 1853 YSEFPVRHNEEILNQEL--NENLPIKIGNYEDSHTKVHLLLQAHFQRCPLPITDFTTDTK 1910
Query: 1889 EVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKR 1948
L R+LQAM+DV G+ + A+ + + QM+ QG W+ DS L+ LPH KD A
Sbjct: 1911 SALDQGIRILQAMIDVSFEYGYFATAIQVIRLLQMLVQGRWDYDSSLMTLPHINKDFADF 1970
Query: 1949 CQEN----PGKSIETVFDLVEMEDDERRELLQ---MSDVQLLDIARFCNRFPNIDMSFEV 2001
N G+ I + D++++ D+ L +SD Q+ + + P + + + +
Sbjct: 1971 LSSNLILSNGEQISNLSDMLKIPRDKIHLSLTNIGLSDSQIKETLNVIDHLPKVKIEYFI 2030
Query: 2002 QDSEN------------------------------VRAGEDITLQVVLERDLEGRTEVGP 2031
+ N V +G++ +++ + R+ + G
Sbjct: 2031 NTNNNSNNNDDNNNENNNNNNKKNNNNNNNNNKSIVYSGQEFNIKIKVTRE-NKKFSNGH 2089
Query: 2032 VYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKT--YTLY 2089
++ Y K K+EGW +V+ D K Q++ KRV + V +F P + + Y +
Sbjct: 2090 AFAPLYSKDKDEGWIMVLTDEK-EQMIGFKRVPQMISNSVTANFKIPKAPFQSSTNYNVK 2148
Query: 2090 FMCDSYMGCDQEYAFTVDV 2108
D+YMG D + F V +
Sbjct: 2149 LYSDTYMGLDYFHTFQVPI 2167
>sp|E7F8F4|ASCC3_DANRE Activating signal cointegrator 1 complex subunit 3 OS=Danio rerio
GN=ascc3 PE=3 SV=2
Length = 1534
Score = 1330 bits (3443), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 683/1550 (44%), Positives = 961/1550 (62%), Gaps = 145/1550 (9%)
Query: 445 LPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVY 504
LPEG +R NK YEE+ +P + P+ EK + +SE+ E Q FKGM +LNR+QS V+
Sbjct: 23 LPEGIRRDNNKMYEEVEIPPNEPMPIGFEEKAVFVSELDEIGQLVFKGMKRLNRIQSIVF 82
Query: 505 KSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564
++A ++ +N+L+CAPTGAGKTN+A+LTIL ++ + G +KIVYVAPMKAL A
Sbjct: 83 ETAYNTNENLLICAPTGAGKTNIAMLTILHEIRQHLQPGGVIRKDQFKIVYVAPMKALAA 142
Query: 565 EVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS-GDRTYTQL 623
E+ S RL+ + V+EL+GD LT+ +I TQ++VTTPEKWD++TRKS GD +Q+
Sbjct: 143 EMTNYFSKRLEPLGIAVKELTGDMQLTKGEILRTQMLVTTPEKWDVVTRKSVGDVALSQV 202
Query: 624 VKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN 683
V+LLI+DE+HLLH++RGPVLES+VART+RQ+E+T+ IR++GLSATLPNY DVA FL VN
Sbjct: 203 VRLLILDEVHLLHEDRGPVLESLVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVN 262
Query: 684 LEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVHS 742
GLFYFD+ +RPVPL Q ++GI+ +Q+ M ++CYEKV+ + HQV++FVH+
Sbjct: 263 PFIGLFYFDSRFRPVPLGQSFVGIKTTNKVQQLHDMEEVCYEKVLKQIKAGHQVMVFVHA 322
Query: 743 RKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHA 802
R T +TA ++ + A L F + + ++ ++++ P GF IHHA
Sbjct: 323 RNSTVRTAMSLIEMAKNRGELSFFQVDQGADYGQCEKQIQRSRNKQMREMFPDGFGIHHA 382
Query: 803 GMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPL 862
GM R DR L+E +F G+++VLV TATLAWGVNLPAH VIIKGT IY+ ++G +L L
Sbjct: 383 GMLRQDRSLMESMFSRGYLKVLVCTATLAWGVNLPAHAVIIKGTNIYDAKRGTLVDLGIL 442
Query: 863 DIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVL 922
D+MQ+ GRAGRPQ+D YGEG IIT H +L +YL+L+ QQ PIESQF LAD LNAEI L
Sbjct: 443 DVMQIFGRAGRPQFDKYGEGTIITTHDKLSHYLTLLTQQNPIESQFQQSLADNLNAEIAL 502
Query: 923 GTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRN 982
GTV N EA W+ YTYLY+RM NP YG+ + + D L R +LV + LD+
Sbjct: 503 GTVTNVDEAVRWLSYTYLYVRMRANPLAYGINHKAYQMDPQLELYRKELVVESGRKLDKA 562
Query: 983 NLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYV 1042
++++D ++GYF TDLGR AS++YI + TI ++NE + ++ + S +EEF+ +
Sbjct: 563 RMIRFDERTGYFASTDLGRTASHFYIKYNTIESFNELFNAQNTEADVLSIVSKAEEFEQI 622
Query: 1043 TVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQS 1102
VR V+E + + + +L ++ + +
Sbjct: 623 KVR-----------------VQEEDADGKSSVQILCGSHHT------------------N 647
Query: 1103 AGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKD 1162
A R++RALFE+ L++ W + + LNL K++ KR+W PLRQFN +P L ++E K+
Sbjct: 648 AARIMRALFEMALRKRWPAMTYRLLNLCKVMDKRLWGWAHPLRQFNTLPASALARMEDKN 707
Query: 1163 FAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPD 1222
++ D+ E+G ++ +G + + VHQ P ++L + +QPITRTVL+V L+ITPD
Sbjct: 708 LTIDKLRDMGKDEIGHMLHHVNIGLKVKQCVHQIPAILLESSIQPITRTVLRVRLSITPD 767
Query: 1223 FLWDDKVHGYV-EPFWVIVEDNDGEYILHHEYFMLKKQYI--EEDHSLNFTVPIYEPLPP 1279
F W+D+VHG V EP+W+ VED ++I H EYF+L+K+ + E + FT+PI+EP+P
Sbjct: 768 FRWNDQVHGSVGEPWWLWVEDPINDHIYHSEYFLLQKKQVVSGEPQQVVFTIPIFEPMPS 827
Query: 1280 QYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGF 1339
QY+IR VSD+WLGS+ V ++F+HLILPE++PP TELLDLQPLP+TAL N YE+LY+ F
Sbjct: 828 QYYIRAVSDRWLGSEAVCIINFQHLILPERHPPHTELLDLQPLPITALGNREYESLYK-F 886
Query: 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPL 1399
H+NPIQTQ+F LY+TD NVL+ APTGSGKTI +E AI R + V VYIAPL
Sbjct: 887 THYNPIQTQIFHTLYHTDTNVLLGAPTGSGKTIAAEMAIFRVFNMYPTSKV---VYIAPL 943
Query: 1400 EALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQR 1459
+AL +ER DW+I+ + LG +VVELTG+ D++ + + +I++TPEKWD +SR W+ R
Sbjct: 944 KALVRERIEDWKIRIEEKLGRKVVELTGDNTPDMRAIAQADLIVTTPEKWDGVSRSWQNR 1003
Query: 1460 KYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGE 1519
YVQ+V++ IIDE+HL+G GPVLEVIVSR +I+S +R+V LST+LANA+DL +
Sbjct: 1004 SYVQKVAILIIDEIHLLGEDRGPVLEVIVSRTNFISSHTSKTVRVVGLSTALANARDLAD 1063
Query: 1520 WIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALV 1579
W+G GLFNF P VRPVPLE+HIQG ++ RM M KP F AI H+ KP L+
Sbjct: 1064 WLGIGQVGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMATMNKPVFQAIRTHSP-AKPVLI 1122
Query: 1580 FVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYL 1639
FV SR+ RLTA+DL+ + + + D K +L E+ I I+E LK TL G+G
Sbjct: 1123 FVSSRRQTRLTALDLIAFLATEDDPKQ-WLHQDEREMTDIIATIRESNLKLTLAFGIGMH 1181
Query: 1640 HEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYP 1699
H GL++ D++ V LF KI+V + +S++ WGV AHLV+V GT+YYDG+ + DYP
Sbjct: 1182 HAGLHERDRKTVEELFVNCKIQVLIATSTLAWGVNFPAHLVIVKGTEYYDGKTRRYVDYP 1241
Query: 1700 VTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFL---------------------- 1737
+TD+LQMMG A RP D+ GK VIL H +K++YKKFL
Sbjct: 1242 ITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPFPVESSLLSVLSDHLNAEI 1301
Query: 1738 ----------------------RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASK 1775
RL NP+YYNL +SH ++ +LS LVE ++ DLE S
Sbjct: 1302 AAGTVTSKQDAMDYITWTYFFRRLVMNPSYYNLDDISHETINKYLSNLVERSLRDLECSY 1361
Query: 1776 CIIIEED-MDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLA-SASEYAQL 1833
C+ I++D + P +G I+SYYY+ + TI F L P+ + LL +L+ S+Y
Sbjct: 1362 CMEIQQDEQTIEPLTYGRISSYYYLKHQTIRMFKERLKPELPVHELLAILSLPCSDYGT- 1420
Query: 1834 PIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLS 1893
D + VL +
Sbjct: 1421 ----------------------------------------------------DTKTVLDN 1428
Query: 1894 ASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMK 1943
A R+ QAM+DV+++ GWL AL + QM+ Q W DS LL LPH K
Sbjct: 1429 AIRICQAMLDVVANEGWLVSALSLCNLVQMIIQARWLHDSSLLTLPHIQK 1478
>sp|O60072|MUG81_SCHPO Putative helicase mug81 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mug81 PE=1 SV=1
Length = 1935
Score = 1282 bits (3317), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 723/1849 (39%), Positives = 1065/1849 (57%), Gaps = 130/1849 (7%)
Query: 345 EERKKIEEEMMGL-GPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGR 403
E++ I+E+++ L G D ++ + A + E N + A +L D S+ G
Sbjct: 107 EDQCAIQEDLLNLVGLDHIDLISDIVANSSNLIEEYMNQNDT--SIAAQLSDGYTSEAGS 164
Query: 404 DR---RGLVDR------------DADGGWLGQRQLLDLDTLAFQQGGLFMAN------RK 442
+GL+D D G +Q+ +++ G + N +K
Sbjct: 165 SATHGQGLLDSLKSRPRRFSRSRDNRGPLFTGQQVFEVEKYPHVYGDKRLGNTISVIGKK 224
Query: 443 CDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSR 502
LP GS+R + YEEI VP + P EKL++IS M + F LNR+QS
Sbjct: 225 FALPAGSEREDYQKYEEIIVPHAQRAPQMQGEKLLEISSMDILCRKTFLSYQTLNRIQSL 284
Query: 503 VYKSALSSADNILLCAPTGAGKTNVAVLTILQQLA-----LNRNDDG---SFNHSNYKIV 554
VY A + +N+L+CAPTGAGKT+VA+L +LQ ++ +N D+ + ++KIV
Sbjct: 285 VYPIAYKTNENMLICAPTGAGKTDVALLAMLQTISNYVESMNLMDESEPLDVHRDDFKIV 344
Query: 555 YVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRK 614
Y+APMKAL AEVV + RL +K REL+GD LT+ +I ETQI+VTTPEKWD++TRK
Sbjct: 345 YIAPMKALAAEVVEKMGKRLAWLGLKTRELTGDMQLTKTEIAETQILVTTPEKWDVVTRK 404
Query: 615 S-GDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY 673
S GD + V+L+IIDE+H+LHD RG V+ES+VART R +ET+++ IR+VGLSATLPNY
Sbjct: 405 SVGDTQLAEKVRLVIIDEVHMLHDERGAVIESLVARTQRLVETSQQMIRIVGLSATLPNY 464
Query: 674 EDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGK 733
DVA FL VN KGLFYF +++RP P+ Q +IG + + + ++ C++KV+ + +
Sbjct: 465 LDVADFLGVNRYKGLFYFSSAFRPCPIEQHFIGAKGSPKIVNSNI-DEACFDKVLKLIQE 523
Query: 734 -HQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDL 792
HQV+IFVHSRKET +A+ +R+ + Q K+ +LK+L
Sbjct: 524 GHQVMIFVHSRKETINSAKKLREQFFHEGEADLLDNSQHEKYSLAQRDVSKSKNKELKEL 583
Query: 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPE 852
Y IH+AGM R DR L E LF G +++L TATLAWGVNLPA+ V+IKGTQ+Y+P+
Sbjct: 584 FKYSMGIHNAGMLRSDRHLTERLFSMGILKILCCTATLAWGVNLPAYAVLIKGTQLYDPQ 643
Query: 853 KGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKL 912
KG++ +L LD++Q+ GRAGRPQ++S IIT H +L +Y+S++ QQ PIES+F +L
Sbjct: 644 KGSFVDLGVLDVLQIFGRAGRPQFESSAVAYIITTHDKLSHYISVVTQQSPIESRFTDRL 703
Query: 913 ADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLV 972
D LNAE+ LGTV N EA +W+GYTYLYIRM RNP +YG+A + L ED LG +R +LV
Sbjct: 704 VDNLNAEVSLGTVTNIDEAVSWLGYTYLYIRMRRNPLVYGIAYDELVEDPLLGSKRRELV 763
Query: 973 HTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRL 1032
AA L N ++ Y++K+GY DLGRIAS YYI++ T+ST N LK M + ++ L
Sbjct: 764 SVAAGRLADNQMIVYNKKNGYLIPKDLGRIASNYYINYQTVSTLNNLLKSKMSEADIIAL 823
Query: 1033 FSLSEEFKYVTVRQDEKMELAKLLDR-VPIPVKESLEEPSAKINVLLQAYISQLKLEGLS 1091
S EF + R++E EL L++ P +++S+ S K+NV+LQ+YIS+ +E +
Sbjct: 824 LSQCSEFSQIKSRENEHRELESLMENSSPCQLRDSISNTSGKVNVILQSYISRAHVEDFT 883
Query: 1092 LTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIP 1151
LTSD ++ Q+AGR+ RALFEI + R WA A L+L+K + +R WS + PL QF+ +P
Sbjct: 884 LTSDTNYVAQNAGRITRALFEIAMSRTWAS-AFTILSLNKSIDRRQWSFEHPLLQFD-LP 941
Query: 1152 NEILMKLEKK--DFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPIT 1209
+++ +K+E + + E D+S ELG+LI KMG T+ KF+ + P L + + P+T
Sbjct: 942 HDLAVKVENQCGSLSLEELSDMSTGELGDLIHNRKMGPTVKKFISKLPLLNINVDLLPLT 1001
Query: 1210 RTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNF 1269
+ VL++ L ITP+F WD + HG + FW+ VED++G ILHHE +L K+ + H L+F
Sbjct: 1002 KNVLRLVLNITPNFNWDMRYHGNSQMFWIFVEDSNGLEILHHEQLLLNKRNVSTSHLLSF 1061
Query: 1270 TVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRN 1329
T+P+ PLP Q +I VSDKWLG++TV PVS +++ + P TELLDLQPLP+TAL +
Sbjct: 1062 TIPVSNPLPSQLYIIAVSDKWLGAETVTPVSLSNVVFHDDSNPITELLDLQPLPITALHD 1121
Query: 1330 PLYEALY-QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAI---LRNHQKA 1385
P+ E + + F FN +QTQ F +Y+TD N+ V APTGSGKT+ +E A L N+ K+
Sbjct: 1122 PVLEGICAKRFSFFNAVQTQFFHTIYHTDTNIFVGAPTGSGKTMAAELATWRALHNYPKS 1181
Query: 1386 SETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIIST 1445
+ VYIAP++AL KER +DW + + +G+ ++ELTG+T D+K + III+T
Sbjct: 1182 ------KVVYIAPMKALVKERVKDWGHRLVEPMGISMIELTGDTNPDVKAVTNANIIITT 1235
Query: 1446 PEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIV 1505
PEKWD ++R WK RKYVQ VSL I+DE+HL+G GPVLE+IVSRM Y+ASQ K+R++
Sbjct: 1236 PEKWDGITRSWKSRKYVQDVSLIILDEIHLLGSDRGPVLEMIVSRMNYVASQTNKKVRVL 1295
Query: 1506 ALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFT 1565
LST++ANA DL W+ GLFNF VRPVPLEI+I G + RM +M KP F
Sbjct: 1296 GLSTAVANANDLANWLN-IRDGLFNFRHSVRPVPLEIYIDGFPGRAYCPRMMSMNKPAFQ 1354
Query: 1566 AIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQE 1625
AI H+ + P L+FV SR+ RLTA DL+ + ++ D FL EE+E + +++
Sbjct: 1355 AIKTHSPTQ-PVLIFVSSRRQTRLTAKDLIAFCGLE-DNPRRFLYMDEEELEMIVSEVED 1412
Query: 1626 EMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGT 1685
+ LK L G+ H GL + D+++ LF K+++ + +S++ WGV AHLV+V GT
Sbjct: 1413 KSLKLALPFGIALHHAGLTENDRKISEELFVNNKVQILIATSTLAWGVNTPAHLVIVKGT 1472
Query: 1686 QYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFL-------- 1737
+YYD + + D +TD+LQM+G A RP DNSG I +K +YK FL
Sbjct: 1473 EYYDAKIGGYKDMDLTDVLQMLGRAGRPQFDNSGVARIFVQDIKKSFYKHFLHSGFPVES 1532
Query: 1738 ------------------------------------RLTQNPNYYNLQGVSHRHLSDHLS 1761
R+ QNP YY G + + +LS
Sbjct: 1533 YLHKVLDNHLNAEIATGTIDCIQGAMDFLTCTYFYRRVHQNPVYYGADGDDQKSIDTYLS 1592
Query: 1762 ELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLL 1821
+LV ++LE S CI + +P+ G I SYYY+ +TTI F +T L
Sbjct: 1593 KLVVTAFNELEKSACIYRVNEETYAPTTLGRIVSYYYLFHTTIRNFVQKITENAEFDLAL 1652
Query: 1822 EVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFE--NPKFTDPHVKANALLQAHFSRQQV 1879
++LA ASE+ L IR E+ + + ++S N D HVKA L QAH +R ++
Sbjct: 1653 QLLAEASEFDDLAIRHNEDLINIEINKSLKYSAACLNLPMVDAHVKAFILTQAHMARLKL 1712
Query: 1880 G-GNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQL 1938
+ D VL R++Q+ +DV + G+ + L + + Q + Q + + L
Sbjct: 1713 PVDDYVTDTSTVLDQVIRIIQSYIDVSAELGYSHVCLQYISLMQCLKQACYPSEIYRASL 1772
Query: 1939 PHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQM--SDVQLLDIARFCNRFPNI- 1995
P K ++ K ++ EL QM +D + DI N +
Sbjct: 1773 PGLNASSEKEARDYLNK----------FAGNKTDELYQMLCNDPNVFDIESLVNSLISYP 1822
Query: 1996 DMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTN 2055
M+ EV S + + L + L R + +++ +PK + EG+++++ D++T
Sbjct: 1823 KMNIEVSQSSSDK------LLLYLRRLNQPLNPDFYIFAPLFPKPQSEGFFVLIIDSETQ 1876
Query: 2056 QLLAIKRVSLQRKS---------RVKLDFAAPAEAGKKTYTLYFMCDSY 2095
+L AI+R S + R+ +D P + + +CD Y
Sbjct: 1877 ELFAIRRASFAGRRNDDSIRLSLRISMDI--PPTCRNRNVKVMVVCDGY 1923
>sp|P53327|SLH1_YEAST Antiviral helicase SLH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SLH1 PE=1 SV=2
Length = 1967
Score = 1208 bits (3125), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 674/1740 (38%), Positives = 1030/1740 (59%), Gaps = 119/1740 (6%)
Query: 435 GLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPN---EKLIKISEMPEWAQPAFK 491
+ A +K LP G+ R + +EEI +PA + N KL+KIS++ + + F
Sbjct: 226 AMAFAGQKFTLPVGTTRMSYNTHEEIIIPAADQAS-NKNYLYTKLLKISDLDHFCKTVFP 284
Query: 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQL----ALNRNDDGSFN 547
T LN++QS VY A + +N+L+CAPTGAGKT++A+LTI+ + +N ++
Sbjct: 285 YET-LNQIQSLVYPVAYKTNENMLICAPTGAGKTDIALLTIINTIKQFSVVNGENEIDIQ 343
Query: 548 HSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEK 607
+ ++K++YVAP+KAL AE+V S +L ++++VREL+GD LT+ +I TQ+IVTTPEK
Sbjct: 344 YDDFKVIYVAPLKALAAEIVDKFSKKLAPFNIQVRELTGDMQLTKAEILATQVIVTTPEK 403
Query: 608 WDIITRKS-GDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGL 666
WD++TRK+ GD VKLLIIDE+HLLH++RG V+E++VART+RQ+E+++ IR++GL
Sbjct: 404 WDVVTRKANGDNDLVSKVKLLIIDEVHLLHEDRGSVIETLVARTLRQVESSQSMIRIIGL 463
Query: 667 SATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKK-PLQRFQLMNDLCYE 725
SATLPN+ DVA FL VN + G+FYFD S+RP PL QQ +G + K Q + ++ + Y+
Sbjct: 464 SATLPNFMDVADFLGVNRQIGMFYFDQSFRPKPLEQQLLGCRGKAGSRQSKENIDKVAYD 523
Query: 726 KVVAVAGK-HQVLIFVHSRKETAKTARAIRDTALENDTLGRF----LKEDSVSREILQSH 780
K+ + + +QV++FVHSRKET K+AR A N + F +++D SR ++++
Sbjct: 524 KLSEMIQRGYQVMVFVHSRKETVKSARNFIKLAESNHEVDLFAPDPIEKDKYSRSLVKN- 582
Query: 781 TDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHT 840
+ D+K++ +GF IHHAGM R DR L E +F DG ++VL TATLAWGVNLPA
Sbjct: 583 ----RDKDMKEIFQFGFGIHHAGMARSDRNLTEKMFKDGAIKVLCCTATLAWGVNLPADC 638
Query: 841 VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSY-GEGIIITGHSELRYYLSLMN 899
VIIKGTQ+Y+ +KG + +L D++Q+ GR GRP + S G GI+ T + L +Y+SL+
Sbjct: 639 VIIKGTQVYDSKKGGFIDLGISDVIQIFGRGGRPGFGSANGTGILCTSNDRLDHYVSLIT 698
Query: 900 QQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLK 959
QQ PIES+F SKL D LNAEI LG+V N EA W+GYTY+++RM +NP YG+ E +
Sbjct: 699 QQHPIESRFGSKLVDNLNAEISLGSVTNVDEAIEWLGYTYMFVRMRKNPFTYGIDWEEIA 758
Query: 960 EDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEH 1019
D L ERR ++ AA L ++ +D S +F DLGR++S +Y+ + ++ +N+
Sbjct: 759 NDPQLYERRRKMIVVAARRLHALQMIVFDEVSMHFIAKDLGRVSSDFYLLNESVEIFNQM 818
Query: 1020 LKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDR-VPIPVKESLEEPSAKINVLL 1078
P + ++ + S+S EF + R++E EL +L D V + L+ P K NVLL
Sbjct: 819 CDPRATEADVLSMISMSSEFDGIKFREEESKELKRLSDESVECQIGSQLDTPQGKANVLL 878
Query: 1079 QAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMW 1138
QAYISQ ++ +L+SD ++ Q++ R+ RALF I + R W + + LN+ K + KR+W
Sbjct: 879 QAYISQTRIFDSALSSDSNYVAQNSVRICRALFLIGVNRRWGKFSNVMLNICKSIEKRLW 938
Query: 1139 SVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPK 1198
+ PL QF+ +P I+ ++ + E +L ELGEL+ K G L+K + +FPK
Sbjct: 939 AFDHPLCQFD-LPENIIRRIRDTKPSMEHLLELEADELGELVHNKKAGSRLYKILSRFPK 997
Query: 1199 LILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKK 1258
+ + A + PIT V+++ + + PDF+WD ++HG + FWV VE++D ILH E F+L +
Sbjct: 998 INIEAEIFPITTNVMRIHIALGPDFVWDSRIHGDAQFFWVFVEESDKSQILHFEKFILNR 1057
Query: 1259 QYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLD 1318
+ + H ++F +P+ +PLPPQ ++VVSD W+G ++ +SF+HLI P T+LL
Sbjct: 1058 RQLNNQHEMDFMIPLSDPLPPQVVVKVVSDTWIGCESTHAISFQHLIRPFNETLQTKLLK 1117
Query: 1319 LQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAI 1378
L+PLP +AL+NPL E++Y FK+FNP+QT F LYNT++N V +PTGSGKTI +E AI
Sbjct: 1118 LRPLPTSALQNPLIESIYP-FKYFNPMQTMTFYTLYNTNENAFVGSPTGSGKTIVAELAI 1176
Query: 1379 LRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEK 1438
H + G + VYIAP++AL +ER DW K G +VVELTG++ D K +
Sbjct: 1177 W--HAFKTFPG-KKIVYIAPMKALVRERVDDWRKKITPVTGDKVVELTGDSLPDPKDVHD 1233
Query: 1439 GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQV 1498
I+I+TPEK+D +SR W+ RK+VQ VSL I+DE+HL+ GP+LE+IVSRM YI+SQ
Sbjct: 1234 ATIVITTPEKFDGISRNWQTRKFVQDVSLIIMDEIHLLASDRGPILEMIVSRMNYISSQT 1293
Query: 1499 ENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGV-DITNFEARMQ 1557
+ +R++ +ST+++NA D+ W+G HGL+NFP VRPVPL+++I G D F M+
Sbjct: 1294 KQPVRLLGMSTAVSNAYDMAGWLGVKDHGLYNFPSSVRPVPLKMYIDGFPDNLAFCPLMK 1353
Query: 1558 AMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVE 1617
M KP F AI QH+ +KPAL+FV SR+ RLTA+DL+ M+ + + + EE++
Sbjct: 1354 TMNKPVFMAIKQHSP-DKPALIFVASRRQTRLTALDLIHLCGMEDNPRRFLNIDDEEELQ 1412
Query: 1618 PFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTA 1677
++ + ++ LK +L+ G+G H GL + D+ + LF+ KI++ + +S++ WGV L A
Sbjct: 1413 YYLSQVTDDTLKLSLQFGIGLHHAGLVQKDRSISHQLFQKNKIQILIATSTLAWGVNLPA 1472
Query: 1678 HLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFL 1737
HLV++ GTQ++D + + D +TD+LQMMG A RP D +G ++ +K +YK FL
Sbjct: 1473 HLVIIKGTQFFDAKIEGYRDMDLTDILQMMGRAGRPAYDTTGTAIVYTKESKKMFYKHFL 1532
Query: 1738 --------------------------------------------RLTQNPNYYNLQ-GVS 1752
R NP YY ++ S
Sbjct: 1533 NVGFPVESSLHKVLDDHLGAEITSGSITNKQEALDFLSWTFLFRRAHHNPTYYGIEDDTS 1592
Query: 1753 HRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLT 1812
+S+HLS L+++T+ +L S+C+++ D D+ + I+SYYYIS+ TI + +
Sbjct: 1593 TAGVSEHLSSLIDSTLENLRESQCVLLHGD-DIVATPFLSISSYYYISHLTIRQLLKQIH 1651
Query: 1813 PKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFT--------DPHV 1864
+ +L L+ A EY +LP+R GE + + R+S E+ FT DPHV
Sbjct: 1652 DHATFQEVLRWLSLAVEYNELPVRGGEIIMNEEMSQQSRYSVES-TFTDEFELPMWDPHV 1710
Query: 1865 KANALLQAHFSRQQVG-GNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQM 1923
K LLQAH SR + + D VL + R+LQA +DV S G+ L +++ Q
Sbjct: 1711 KTFLLLQAHLSRVDLPIADYIQDTVSVLDQSLRILQAYIDVASELGYFHTVLTMIKMMQC 1770
Query: 1924 VTQGMWERDSMLLQLPHF----MKDLAKRCQ----ENPGKSIETVFDLVEMEDDERRELL 1975
+ QG W D + LP +KD Q P + + + L E+ ++LL
Sbjct: 1771 IKQGYWYEDDPVSVLPGLQLRRIKDYTFSEQGFIEMTPQQKKKKLLTLEEIGRFGYKKLL 1830
Query: 1976 QMSDVQLLDIA-------RF---CNRFPNID-MSFEVQDSENVRAGEDITLQVVLERDLE 2024
+ D + RF C R P ++ M FE Q++ V + L
Sbjct: 1831 NVFDQLTFGMTESEDTKKRFVSVCQRLPVLEGMKFEEQENNEVLT--------FYSKHLS 1882
Query: 2025 GRTEVG-PVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRV---SLQRKSRVKLDFAAPAE 2080
+ G VY +++PK ++E W+L+ K ++LL IKR + ++ + D P E
Sbjct: 1883 SKHNNGFEVYCDKFPKIQKELWFLI--GHKGDELLMIKRCQPKQMNKEVIIHCDLFIPEE 1940
Score = 221 bits (562), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 199/848 (23%), Positives = 380/848 (44%), Gaps = 114/848 (13%)
Query: 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS----------ET 1388
++ N IQ+ V+ V Y T++N+L+ APTG+GKT + I+ ++ S +
Sbjct: 285 YETLNQIQSLVYPVAYKTNENMLICAPTGAGKTDIALLTIINTIKQFSVVNGENEIDIQY 344
Query: 1389 GVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEK 1448
+ +Y+APL+ALA E + K ++V ELTG+ + + Q+I++TPEK
Sbjct: 345 DDFKVIYVAPLKALAAEIVDKFSKKLAP-FNIQVRELTGDMQLTKAEILATQVIVTTPEK 403
Query: 1449 WDALSRRWK-QRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVAL 1507
WD ++R+ V +V L IIDE+HL+ G V+E +V+R ++ IRI+ L
Sbjct: 404 WDVVTRKANGDNDLVSKVKLLIIDEVHLLHEDRGSVIETLVARTLRQVESSQSMIRIIGL 463
Query: 1508 STSLANAKDLGEWIGATSH-GLFNFPPGVRPVPLEIHIQGV-DITNFEARMQAMTKPTFT 1565
S +L N D+ +++G G+F F RP PLE + G + + K +
Sbjct: 464 SATLPNFMDVADFLGVNRQIGMFYFDQSFRPKPLEQQLLGCRGKAGSRQSKENIDKVAYD 523
Query: 1566 AIVQHAKNEKPALVFVPSRK--------YVRLTA----VDLMTYSSMDGDQKSAFLLWPA 1613
+ + + +VFV SRK +++L VDL ++ D+ S L
Sbjct: 524 KLSEMIQRGYQVMVFVHSRKETVKSARNFIKLAESNHEVDLFAPDPIEKDKYSRSL---- 579
Query: 1614 EEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGV 1673
+ N ++M K + G G H G+ ++D+ + +F+ G IKV ++++ WGV
Sbjct: 580 ------VKNRDKDM-KEIFQFGFGIHHAGMARSDRNLTEKMFKDGAIKVLCCTATLAWGV 632
Query: 1674 PLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHA-PRKEY 1732
L A V++ GTQ YD ++ D ++D++Q+ G RP ++ ILC + R ++
Sbjct: 633 NLPADCVIIKGTQVYDSKKGGFIDLGISDVIQIFGRGGRPGFGSANGTGILCTSNDRLDH 692
Query: 1733 YKK--------------------------------------------FLRLTQNPNYYNL 1748
Y F+R+ +NP Y +
Sbjct: 693 YVSLITQQHPIESRFGSKLVDNLNAEISLGSVTNVDEAIEWLGYTYMFVRMRKNPFTYGI 752
Query: 1749 ---QGVSHRHLSDHLSELVENTISDLEASKCIIIEE-DMDLSPSNHGMIASYYYISYTTI 1804
+ + L + +++ L A + I+ +E M + G ++S +Y+ ++
Sbjct: 753 DWEEIANDPQLYERRRKMIVVAARRLHALQMIVFDEVSMHFIAKDLGRVSSDFYLLNESV 812
Query: 1805 ERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHV 1864
E F+ P+ +L +++ +SE+ + R E + ++RL + P
Sbjct: 813 EIFNQMCDPRATEADVLSMISMSSEFDGIKFREEESKELKRLSDESVECQIGSQLDTPQG 872
Query: 1865 KANALLQAHFSRQQV-GGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQM 1923
KAN LLQA+ S+ ++ L D V ++ R+ +A+ + + W + + + + +
Sbjct: 873 KANVLLQAYISQTRIFDSALSSDSNYVAQNSVRICRALFLIGVNRRWGKFSNVMLNICKS 932
Query: 1924 VTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLL 1983
+ + +W D L Q DL + + ++ L+E+E DE EL+
Sbjct: 933 IEKRLWAFDHPLCQF-----DLPENIIRRIRDTKPSMEHLLELEADELGELVHNKKAG-S 986
Query: 1984 DIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGP--VYSNRYPKAK 2041
+ + +RFP I++ E+ IT V + +GP V+ +R
Sbjct: 987 RLYKILSRFPKINIEAEI---------FPITTNV-----MRIHIALGPDFVWDSRI-HGD 1031
Query: 2042 EEGWWLVVGDTKTNQLLAIKRVSLQRK---SRVKLDFAAP-AEAGKKTYTLYFMCDSYMG 2097
+ +W+ V ++ +Q+L ++ L R+ ++ ++DF P ++ + + D+++G
Sbjct: 1032 AQFFWVFVEESDKSQILHFEKFILNRRQLNNQHEMDFMIPLSDPLPPQVVVKVVSDTWIG 1091
Query: 2098 CDQEYAFT 2105
C+ +A +
Sbjct: 1092 CESTHAIS 1099
>sp|A2RUV5|HFM1_XENTR Probable ATP-dependent DNA helicase HFM1 OS=Xenopus tropicalis
GN=hfm1 PE=2 SV=1
Length = 1336
Score = 335 bits (859), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 251/773 (32%), Positives = 392/773 (50%), Gaps = 57/773 (7%)
Query: 479 ISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKT---NVAVLTILQQ 535
++E+P+ + FK N +QS+ + L S N +LCAPTG+GKT +A++ +L Q
Sbjct: 133 VTEIPKQFRTVFKEFPYFNYIQSKALEHLLYSDRNFVLCAPTGSGKTVIFELAIIRLLMQ 192
Query: 536 LALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ-Q 594
+ + +N KIVY+AP+KAL + + + + +EL+GD + +
Sbjct: 193 VPMP--------WTNVKIVYMAPIKALCGQRYDDWKAKFGPVGLNCKELTGDTEMDDLFE 244
Query: 595 IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL-HDNRGPVLESIVAR--TV 651
I+ II+TTPEKWD +TRK D T QLV+L +IDE+H+L +NRG LE +V+R T+
Sbjct: 245 IQHAHIIMTTPEKWDSMTRKWKDNTLVQLVRLFLIDEVHILKEENRGATLEVVVSRMKTI 304
Query: 652 RQIETTKEH------IRLVGLSATLPNYEDVALFLRVNLEKGL-FYFDNSYRPVPLSQQY 704
+ E +R V +SAT+PN ED+A +L G+ D S RPV L +
Sbjct: 305 YSLSHLSEDRKAFIPMRFVAVSATIPNVEDIADWLSDENSPGVCMKMDESSRPVKLRKVV 364
Query: 705 IGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQ----VLIFVHSRKETAKTARAIRDTALEN 760
+G F+ L Y K+ + + L+F +RK + A + A
Sbjct: 365 LGFPCSTKQSEFKFDLTLNY-KIANIIQTYSDGRPTLVFCSTRKGVQQAASILTKDA--- 420
Query: 761 DTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGH 820
+F+ ++ LQ + +K + L+D+L YG HHAG+ DR+++E+ F G
Sbjct: 421 ----KFVMSIE-HKQRLQKCANSIKDSKLRDVLQYGVGYHHAGVDISDRKVIENSFLIGD 475
Query: 821 VQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYG 880
+ VL +T+TLA GVNLPAH VI+K T Y G + E S DI+QM+GRAGRPQ+DS
Sbjct: 476 LPVLFTTSTLAMGVNLPAHLVIVKSTMHY--VSGMFQEYSETDILQMIGRAGRPQFDSTA 533
Query: 881 EGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYL 940
+I+T S Y+ +++ IES L + LNAEI L T+ + K A WI T+L
Sbjct: 534 TAVIMTRLSTKEKYVHMLDGADTIESSLHKHLVEHLNAEIALHTITDVKVALEWIRSTFL 593
Query: 941 YIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLG 1000
YIR L+NPA YG + + K I + + +L L L+K D + F+ T+ G
Sbjct: 594 YIRALKNPAYYGFSEGLDK--IGIEAKLQELCLKNLNDLSSLGLIKMDEEIN-FKPTETG 650
Query: 1001 RIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKL---LD 1057
++ + YYI+ T ++ ++ T EL L S EF V +R +E+ L L +
Sbjct: 651 KLMALYYIAFNTAKLFHT-IRGTETLAELVSLISSCSEFSDVQLRANERRVLNTLNKDKN 709
Query: 1058 RVPI--PVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFE-IV 1114
RV I P++ ++ K+N L+QA++ + ++ SLT D+ I + RL + L E +
Sbjct: 710 RVTIRYPMEGKIKTKEMKVNCLIQAHLGCILVQDFSLTQDISKIFRHGTRLAKCLSEFLA 769
Query: 1115 LKRGWAQLAEKALNLSKMVTKRMWSVQTPL-RQFNGIPNEILMKLEKKDF-AWERYYDLS 1172
L+ AL L+K ++W + + +Q I + + +++ D +
Sbjct: 770 LQENKFSAFLNALILTKCFKSKLWENSSHISKQLEKIGVTLANAMVNAGLTTFKKIEDTN 829
Query: 1173 PQELGELI--RFPKMGRTLHKFVHQFPKL-----ILAAHVQPITRTVLKVELT 1218
+EL ELI R P G + + V PK LA + VL V LT
Sbjct: 830 AREL-ELIVNRHPPFGNQIKESVAHLPKYEIKFQQLAKYRATTAEVVLTVLLT 881
Score = 268 bits (686), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 199/697 (28%), Positives = 337/697 (48%), Gaps = 95/697 (13%)
Query: 1323 PVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNH 1382
PVT + + +++ F +FN IQ++ L +D N ++ APTGSGKT+ E AI+R
Sbjct: 132 PVTEIPKQ-FRTVFKEFPYFNYIQSKALEHLLYSDRNFVLCAPTGSGKTVIFELAIIRLL 190
Query: 1383 QKASETGV-MRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD-LKLLEKGQ 1440
+ ++ VY+AP++AL +RY DW+ KFG +G+ ELTG+T MD L ++
Sbjct: 191 MQVPMPWTNVKIVYMAPIKALCGQRYDDWKAKFGP-VGLNCKELTGDTEMDDLFEIQHAH 249
Query: 1441 IIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIASQV- 1498
II++TPEKWD+++R+WK VQ V LF+IDE+H++ + G LEV+VSRM+ I S
Sbjct: 250 IIMTTPEKWDSMTRKWKDNTLVQLVRLFLIDEVHILKEENRGATLEVVVSRMKTIYSLSH 309
Query: 1499 --ENK-----IRIVALSTSLANAKDLGEWIGATSHGLFNFPPGV--------RPVPLEIH 1543
E++ +R VA+S ++ N +D+ +W+ + PGV RPV L
Sbjct: 310 LSEDRKAFIPMRFVAVSATIPNVEDIADWLSDEN------SPGVCMKMDESSRPVKLRKV 363
Query: 1544 IQGVDITN--FEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMD 1601
+ G + E + I+Q + +P LVF +RK V+ A S +
Sbjct: 364 VLGFPCSTKQSEFKFDLTLNYKIANIIQTYSDGRPTLVFCSTRKGVQQAA------SILT 417
Query: 1602 GDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIK 1661
D K + + ++ ++I++ L+ L++GVGY H G++ +D++V+ F G +
Sbjct: 418 KDAKFVMSIEHKQRLQKCANSIKDSKLRDVLQYGVGYHHAGVDISDRKVIENSFLIGDLP 477
Query: 1662 VCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKC 1721
V +S++ GV L AHLV+V T +Y +Y TD+LQM+G A RP D++
Sbjct: 478 VLFTTSTLAMGVNLPAHLVIVKSTMHY--VSGMFQEYSETDILQMIGRAGRPQFDSTATA 535
Query: 1722 VILCHAPRKEYYKK--------------------------------------------FL 1737
VI+ KE Y ++
Sbjct: 536 VIMTRLSTKEKYVHMLDGADTIESSLHKHLVEHLNAEIALHTITDVKVALEWIRSTFLYI 595
Query: 1738 RLTQNPNYYNL-QGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASY 1796
R +NP YY +G+ + L EL ++DL + I ++E+++ P+ G + +
Sbjct: 596 RALKNPAYYGFSEGLDKIGIEAKLQELCLKNLNDLSSLGLIKMDEEINFKPTETGKLMAL 655
Query: 1797 YYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQ-RFSFE 1855
YYI++ T + F + +T + L+ +++S SE++ + +R E V+ L + R +
Sbjct: 656 YYIAFNTAKLFHTIRGTET-LAELVSLISSCSEFSDVQLRANERRVLNTLNKDKNRVTIR 714
Query: 1856 NP---KFTDPHVKANALLQAHFSRQQVGG-NLKLDQEEVLLSASRLLQAMVDVIS-SNGW 1910
P K +K N L+QAH V +L D ++ +RL + + + ++
Sbjct: 715 YPMEGKIKTKEMKVNCLIQAHLGCILVQDFSLTQDISKIFRHGTRLAKCLSEFLALQENK 774
Query: 1911 LSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAK 1947
S L A+ +++ +WE S H K L K
Sbjct: 775 FSAFLNALILTKCFKSKLWENSS------HISKQLEK 805
>sp|A2PYH4|HFM1_HUMAN Probable ATP-dependent DNA helicase HFM1 OS=Homo sapiens GN=HFM1 PE=2
SV=2
Length = 1435
Score = 328 bits (840), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 252/767 (32%), Positives = 390/767 (50%), Gaps = 62/767 (8%)
Query: 476 LIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQ 535
L ++E+P + FK N +QS+ + L + N ++CAPTG+GKT V L I +
Sbjct: 261 LKAVTEIPAKFRSIFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRL 320
Query: 536 LALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ-Q 594
L + N KIVY+AP+KAL ++ + + + +EL+GD + +
Sbjct: 321 LM-----EVPLPWLNIKIVYMAPIKALCSQRFDDWKEKFGPIGLNCKELTGDTVMDDLFE 375
Query: 595 IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVAR--TV 651
I+ II+TTPEKWD +TRK D + QLV+L +IDE+H++ D NRGP LE +V+R TV
Sbjct: 376 IQHAHIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDEVHIVKDENRGPTLEVVVSRMKTV 435
Query: 652 RQIETTKEH------IRLVGLSATLPNYEDVALFLRVNLEKGL-FYFDNSYRPVPLSQQY 704
+ + T ++ +R V +SAT+PN ED+A +L + D S+RPV L +
Sbjct: 436 QSVSQTLKNTSTAIPMRFVAVSATIPNAEDIAEWLSDGERPAVCLKMDESHRPVKLQKVV 495
Query: 705 IGIQVKKPLQRFQLMNDLCYEKVVAV----AGKHQVLIFVHSRKETAKTARAIRDTALEN 760
+G F+ L Y K+ +V + + L+F +RK + A + A
Sbjct: 496 LGFPCSSNQTEFKFDLTLNY-KIASVIQMYSDQKPTLVFCATRKGVQQAASVLVKDA--- 551
Query: 761 DTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGH 820
+F+ ++ LQ + V+ + L+D+L G A HHAGM DR++VE F G
Sbjct: 552 ----KFIMTVE-QKQRLQKYAYSVRDSKLRDILKDGAAYHHAGMELSDRKVVEGAFTVGD 606
Query: 821 VQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYG 880
+ VL +T+TLA GVNLPAH V+IK T Y G + E S DI+QM+GRAGRPQ+D+
Sbjct: 607 LPVLFTTSTLAMGVNLPAHLVVIKSTMHY--AGGLFEEYSETDILQMIGRAGRPQFDTTA 664
Query: 881 EGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYL 940
+I+T S Y+ ++ + +ES L + LNAEIVL T+ + A WI T L
Sbjct: 665 TAVIMTRLSTRDKYIQMLACRDTVESSLHRHLIEHLNAEIVLHTITDVNIAVEWIRSTLL 724
Query: 941 YIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLG 1000
YIR L+NP+ YG A + K+ I + +L L +L+K D F+ T+ G
Sbjct: 725 YIRALKNPSHYGFASGLNKDGIE--AKLQELCLKNLNDLSSLDLIKMDEGVN-FKPTEAG 781
Query: 1001 RIASYYYISHGTIST-YNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKL---L 1056
R+ ++YYI+ T+ Y K T+ D L L + +EF + +R +EK L L
Sbjct: 782 RLMAWYYITFETVKKFYTISGKETLSD--LVTLIAGCKEFLDIQLRINEKKTLNTLNKDP 839
Query: 1057 DRVPI--PVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIV 1114
+R+ I P++ ++ K+N L+QA + + ++ +LT D I + R+ R L + V
Sbjct: 840 NRITIRFPMEGRIKTREMKVNCLIQAQLGCIPIQDFALTQDTAKIFRHGSRITRWLSDFV 899
Query: 1115 L--KRGWAQLAEKALNLSKMVTKRMWS----VQTPLRQF-----NGIPNEILMKLEKKDF 1163
++ +A L +L L+K ++W V L + N I N L +K +
Sbjct: 900 AAQEKKFAVLL-NSLILAKCFRCKLWENSLHVSKQLEKIGITLSNAIVNAGLTSFKKIEE 958
Query: 1164 AWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITR 1210
R +L L R P G + + V PK L V+ ITR
Sbjct: 959 TDARELELI------LNRHPPFGTQIKETVMYLPKYELK--VEQITR 997
Score = 273 bits (698), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 181/666 (27%), Positives = 329/666 (49%), Gaps = 78/666 (11%)
Query: 1332 YEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGV- 1390
+ ++++ F +FN IQ++ F L TD N ++ APTGSGKT+ E AI R + +
Sbjct: 271 FRSIFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLLMEVPLPWLN 330
Query: 1391 MRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD-LKLLEKGQIIISTPEKW 1449
++ VY+AP++AL +R+ DW+ KFG +G+ ELTG+T MD L ++ II++TPEKW
Sbjct: 331 IKIVYMAPIKALCSQRFDDWKEKFGP-IGLNCKELTGDTVMDDLFEIQHAHIIMTTPEKW 389
Query: 1450 DALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIASQVEN-------- 1500
D+++R+W+ VQ V LF+IDE+H++ + GP LEV+VSRM+ + S +
Sbjct: 390 DSMTRKWRDNSLVQLVRLFLIDEVHIVKDENRGPTLEVVVSRMKTVQSVSQTLKNTSTAI 449
Query: 1501 KIRIVALSTSLANAKDLGEWI--GATSHGLFNFPPGVRPVPLEIHIQGVDITN--FEARM 1556
+R VA+S ++ NA+D+ EW+ G RPV L+ + G ++ E +
Sbjct: 450 PMRFVAVSATIPNAEDIAEWLSDGERPAVCLKMDESHRPVKLQKVVLGFPCSSNQTEFKF 509
Query: 1557 QAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEV 1616
+++Q ++KP LVF +RK V+ A S + D K + + +
Sbjct: 510 DLTLNYKIASVIQMYSDQKPTLVFCATRKGVQQAA------SVLVKDAKFIMTVEQKQRL 563
Query: 1617 EPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLT 1676
+ + ++++ L+ L+ G Y H G+ +D++VV F G + V +S++ GV L
Sbjct: 564 QKYAYSVRDSKLRDILKDGAAYHHAGMELSDRKVVEGAFTVGDLPVLFTTSTLAMGVNLP 623
Query: 1677 AHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKK- 1735
AHLVV+ T +Y G +Y TD+LQM+G A RP D + VI+ ++ Y +
Sbjct: 624 AHLVVIKSTMHYAG--GLFEEYSETDILQMIGRAGRPQFDTTATAVIMTRLSTRDKYIQM 681
Query: 1736 -------------------------------------------FLRLTQNPNYYNL-QGV 1751
++R +NP++Y G+
Sbjct: 682 LACRDTVESSLHRHLIEHLNAEIVLHTITDVNIAVEWIRSTLLYIRALKNPSHYGFASGL 741
Query: 1752 SHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSL 1811
+ + L EL ++DL + I ++E ++ P+ G + ++YYI++ T+++F ++
Sbjct: 742 NKDGIEAKLQELCLKNLNDLSSLDLIKMDEGVNFKPTEAGRLMAWYYITFETVKKF-YTI 800
Query: 1812 TPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQ-----RFSFENPKFTDPHVKA 1866
+ K + L+ ++A E+ + +R E++ + L RF E + +K
Sbjct: 801 SGKETLSDLVTLIAGCKEFLDIQLRINEKKTLNTLNKDPNRITIRFPMEG-RIKTREMKV 859
Query: 1867 NALLQAHFSRQQVGG-NLKLDQEEVLLSASRLLQAMVDVISSN-GWLSLALLAMEVSQMV 1924
N L+QA + L D ++ SR+ + + D +++ ++ L ++ +++
Sbjct: 860 NCLIQAQLGCIPIQDFALTQDTAKIFRHGSRITRWLSDFVAAQEKKFAVLLNSLILAKCF 919
Query: 1925 TQGMWE 1930
+WE
Sbjct: 920 RCKLWE 925
>sp|P51979|HFM1_YEAST ATP-dependent DNA helicase MER3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HFM1 PE=1 SV=3
Length = 1187
Score = 287 bits (735), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 222/705 (31%), Positives = 361/705 (51%), Gaps = 64/705 (9%)
Query: 474 EKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTIL 533
+K + + +P+ + FK T+ N++QS + S S +N ++ +PTG+GKT + L IL
Sbjct: 118 KKCLSTTILPDSFRGVFK-FTEFNKMQSEAFPSIYESNENCIISSPTGSGKTVLFELAIL 176
Query: 534 QQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQT-LTR 592
+ + +D +N KI+Y+AP K+L E+ N ++ V L+ D + L
Sbjct: 177 RLIKETNSDT-----NNTKIIYIAPTKSLCYEMYKNWFP--SFVNLSVGMLTSDTSFLET 229
Query: 593 QQIEETQIIVTTPEKWDIITRKSGDRT-YTQLVKLLIIDEIHLLHDNRGPVLESIVARTV 651
++ ++ II+TTPEKWD++TR+ D + +LVKL+++DEIH + + RG LE I+ R
Sbjct: 230 EKAKKCNIIITTPEKWDLLTRRWSDYSRLFELVKLVLVDEIHTIKEKRGASLEVILTR-- 287
Query: 652 RQIETTKEHIRLVGLSATLPNYEDVALFLRVN--LEKGLFYFDNSYRPVPLSQQYIG--I 707
+ T ++IR V LSAT+PN ED+AL+L+ N L + FD SYR V L++ G
Sbjct: 288 --MNTMCQNIRFVALSATVPNIEDLALWLKTNNELPANILSFDESYRQVQLTKFVYGYSF 345
Query: 708 QVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFL 767
K Q+ + N E + A VLIF +R T TA+ + L N +
Sbjct: 346 NCKNDFQKDAIYNSKLIEIIEKHADNRPVLIFCPTRASTISTAKFL----LNNHIFSKSK 401
Query: 768 KEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVST 827
K + + +D + L + + G A HHAG++ DR VE F G + +L ST
Sbjct: 402 KRCN------HNPSDKI----LNECMQQGIAFHHAGISLEDRTAVEKEFLAGSINILCST 451
Query: 828 ATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITG 887
+TLA GVNLPA+ VIIKGT+ +N + E S LD++QM+GRAGRPQ++++G +I+T
Sbjct: 452 STLAVGVNLPAYLVIIKGTKSWNSSE--IQEYSDLDVLQMIGRAGRPQFETHGCAVIMTD 509
Query: 888 HSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRN 947
+ Y +L++ +ES L + L AE L TV + + A NW+ T+ Y+R +N
Sbjct: 510 SKMKQTYENLIHGTDVLESSLHLNLIEHLAAETSLETVYSIETAVNWLRNTFFYVRFGKN 569
Query: 948 PALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKY---DRKSGYFQVTDLGRIAS 1004
PA Y EV + + + +LD LVK D +G ++ T G +
Sbjct: 570 PAAY---QEVNRYVSFHSVEDSQINQFCQYLLD--TLVKVKIIDISNGEYKSTAYGNAMT 624
Query: 1005 YYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEK-----MELAKLLDRV 1059
+YIS ++ + + K + + L + SEEF + VR +EK + L+ LL +
Sbjct: 625 RHYISFESMKQF-INAKKFLSLQGILNLLATSEEFSVMRVRHNEKKLFKEINLSPLL-KY 682
Query: 1060 PIPVKES----LEEPSAKINVLLQAYISQLKL---EGLS-----LTSDMVFITQSAGRLL 1107
P ++ ++ S K+++L+Q + L+ EG S L D + + RLL
Sbjct: 683 PFLTEKKQSQIIDRVSQKVSLLIQYELGGLEFPSYEGASKLHQTLVQDKFLVFRHCFRLL 742
Query: 1108 RALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTP--LRQFNGI 1150
+ + + +++ + L L + + W TP LRQ I
Sbjct: 743 KCMVDTFIEKSDGTSLKNTLFLLRSLNGHCWE-NTPMVLRQLKTI 786
Score = 206 bits (525), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 165/641 (25%), Positives = 293/641 (45%), Gaps = 118/641 (18%)
Query: 1264 DHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLP 1323
DH L T P + IR + K L S T+LP SFR +
Sbjct: 94 DHDLEQTPDEEAKKPKKVTIRKSAKKCL-STTILPDSFRGVF------------------ 134
Query: 1324 VTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILR-NH 1382
F FN +Q++ F +Y +++N ++++PTGSGKT+ E AILR
Sbjct: 135 --------------KFTEFNKMQSEAFPSIYESNENCIISSPTGSGKTVLFELAILRLIK 180
Query: 1383 QKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETA-MDLKLLEKGQI 1441
+ S+T + +YIAP ++L E Y++W F + + V LT +T+ ++ + +K I
Sbjct: 181 ETNSDTNNTKIIYIAPTKSLCYEMYKNW---FPSFVNLSVGMLTSDTSFLETEKAKKCNI 237
Query: 1442 IISTPEKWDALSRRWKQ-RKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVEN 1500
II+TPEKWD L+RRW + + V L ++DE+H I + G LEVI++RM +
Sbjct: 238 IITTPEKWDLLTRRWSDYSRLFELVKLVLVDEIHTIKEKRGASLEVILTRMNTMCQN--- 294
Query: 1501 KIRIVALSTSLANAKDLGEWIGATSH---GLFNFPPGVRPVPLEIHIQGVDITNFEARMQ 1557
IR VALS ++ N +DL W+ + + +F R V L + G N + Q
Sbjct: 295 -IRFVALSATVPNIEDLALWLKTNNELPANILSFDESYRQVQLTKFVYGYSF-NCKNDFQ 352
Query: 1558 --AMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEE 1615
A+ I++ + +P L+F P+R TA L+ +K
Sbjct: 353 KDAIYNSKLIEIIEKHADNRPVLIFCPTRASTISTAKFLLNNHIFSKSKKRCN------- 405
Query: 1616 VEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPL 1675
N +++L ++ G+ + H G++ D+ V F AG I + +S++ GV L
Sbjct: 406 -----HNPSDKILNECMQQGIAFHHAGISLEDRTAVEKEFLAGSINILCSTSTLAVGVNL 460
Query: 1676 TAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKK 1735
A+LV++ GT+ ++ E +Y D+LQM+G A RP + G VI+ + K+ Y+
Sbjct: 461 PAYLVIIKGTKSWNSSEIQ--EYSDLDVLQMIGRAGRPQFETHGCAVIMTDSKMKQTYEN 518
Query: 1736 --------------------------------------------FLRLTQNPNYYNLQGV 1751
++R +NP Y Q V
Sbjct: 519 LIHGTDVLESSLHLNLIEHLAAETSLETVYSIETAVNWLRNTFFYVRFGKNPAAY--QEV 576
Query: 1752 SHRHLSDH------LSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIE 1805
+R++S H +++ + + L K I I + + + +G + +YIS+ +++
Sbjct: 577 -NRYVSFHSVEDSQINQFCQYLLDTLVKVKIIDI-SNGEYKSTAYGNAMTRHYISFESMK 634
Query: 1806 RFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRL 1846
+F ++ ++G+L +LA++ E++ + +R E+++ + +
Sbjct: 635 QFINA-KKFLSLQGILNLLATSEEFSVMRVRHNEKKLFKEI 674
>sp|Q5UYM9|HELS_HALMA Putative ski2-type helicase OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rrnAC2876
PE=3 SV=1
Length = 799
Score = 168 bits (426), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 125/430 (29%), Positives = 210/430 (48%), Gaps = 54/430 (12%)
Query: 482 MPEWAQPAFK--GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALN 539
+PEW + G+ +L Q+ ++ ++ +N++ PT +GKT +A L +L +A
Sbjct: 9 VPEWLPDHLRDDGIEELYPPQAEAVEAGVTEGENLVASIPTASGKTLIAELAMLSSVA-- 66
Query: 540 RNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQ 599
K +Y+ P++AL +E + + Y + + +G+ + +
Sbjct: 67 ---------RGGKALYIVPLRALASEKQADF-EEFEQYGLDIGVSTGNYESEGGWLADKD 116
Query: 600 IIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDN-RGPVLESIVARTVRQIETTK 658
I+V T EK D + R D + + + ++ DE+HL+ D RGP LE +A+ R
Sbjct: 117 IVVATSEKVDSLVRN--DAPWIEDLTCVVTDEVHLVDDGERGPTLEVTLAKLRR----LN 170
Query: 659 EHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL----- 713
++ V LSAT+ N E +A +L L D+ +RP+ L + G+ + L
Sbjct: 171 PDLQTVALSATIGNAEALATWLDAGL------VDSDWRPIDLQK---GVHYGQALHLEDG 221
Query: 714 --QRFQLMNDLCYEKVV---AVAGKHQVLIFVHSRKETAKTARAIRDTAL------ENDT 762
QR + N+ + + L+FV+SR+ A + +T E D
Sbjct: 222 SQQRLSVQNNEKQTAAIVRDTLEDDGSTLVFVNSRRNAEAAAGRLANTVRPHLSTEERDQ 281
Query: 763 LGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQ 822
L +E ++ +D S+DL D + G A HHAG++RG R+LVED F D V+
Sbjct: 282 LADIAEE-------IRDVSDTETSDDLADAVADGAAFHHAGLSRGHRELVEDAFRDRLVK 334
Query: 823 VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEG 882
V+ +T TLA GVN P+ V+++ + Y+ G LS L++ QM+GRAGRP D YGE
Sbjct: 335 VVCATPTLAAGVNTPSRRVVVRDWRRYDGSAGGMAPLSVLEVHQMMGRAGRPGLDPYGEA 394
Query: 883 III-TGHSEL 891
++I + H E+
Sbjct: 395 VLIASSHDEV 404
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 116/427 (27%), Positives = 201/427 (47%), Gaps = 50/427 (11%)
Query: 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397
G + P Q + +N++ + PT SGKT+ +E A+L + + +A+YI
Sbjct: 21 GIEELYPPQAEAVEAGVTEGENLVASIPTASGKTLIAELAMLSSVARGG-----KALYIV 75
Query: 1398 PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWK 1457
PL ALA E+ D+E +F Q G+ + TG + L I+++T EK D+L R
Sbjct: 76 PLRALASEKQADFE-EFEQ-YGLDIGVSTGNYESEGGWLADKDIVVATSEKVDSLVR--N 131
Query: 1458 QRKYVQQVSLFIIDELHLIG-GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKD 1516
+++ ++ + DE+HL+ G+ GP LEV ++++R ++ ++ VALS ++ NA+
Sbjct: 132 DAPWIEDLTCVVTDEVHLVDDGERGPTLEVTLAKLR----RLNPDLQTVALSATIGNAEA 187
Query: 1517 LGEWIGATSHGLFNFPPGVRPVPLE--------IHI-----QGVDITNFEARMQAMTKPT 1563
L W+ A GL + RP+ L+ +H+ Q + + N E + A+ + T
Sbjct: 188 LATWLDA---GLVD--SDWRPIDLQKGVHYGQALHLEDGSQQRLSVQNNEKQTAAIVRDT 242
Query: 1564 FTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMT-----YSSMDGDQKSAFLLWPAEEVEP 1618
+++ LVFV SR+ A L S+ + DQ + AEE+
Sbjct: 243 L-------EDDGSTLVFVNSRRNAEAAAGRLANTVRPHLSTEERDQLADI----AEEIRD 291
Query: 1619 FIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAH 1678
D + L + G + H GL++ +E+V F +KV + ++ GV +
Sbjct: 292 VSDTETSDDLADAVADGAAFHHAGLSRGHRELVEDAFRDRLVKVVCATPTLAAGVNTPSR 351
Query: 1679 LVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILC--HAPRKEYYKKF 1736
VVV + YDG V ++ QMMG A RP LD G+ V++ H E ++++
Sbjct: 352 RVVVRDWRRYDGSAGGMAPLSVLEVHQMMGRAGRPGLDPYGEAVLIASSHDEVDELFERY 411
Query: 1737 LRLTQNP 1743
+ P
Sbjct: 412 VWADPEP 418
>sp|A6UN73|HELS_METVS Putative ski2-type helicase OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=Mevan_0030 PE=3 SV=1
Length = 751
Score = 167 bits (423), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 180/634 (28%), Positives = 310/634 (48%), Gaps = 108/634 (17%)
Query: 492 GMTQLNRVQSRVYKSAL-SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
G+ +L Q +V + L + N L+C PT +GKT + + +L + D ++N +
Sbjct: 12 GIEELRPPQKKVIEEGLLDKSKNFLICIPTASGKTLIGEMALLNHVL-----DENYNLTG 66
Query: 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDI 610
K +++ P+KAL +E + + Y +KV GD T++ + + II+TT EK D
Sbjct: 67 KKGLFIVPLKALASEKFDEFQKKYETYGIKVGMSIGDYD-TKEDLSKYNIIITTSEKLDS 125
Query: 611 ITRKSGDRTYTQLVKLLIIDEIHLLHDN-RGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
+ R + + + + + L +IDEIHL+ DN RG LE I+ + ++ I ++VGLSAT
Sbjct: 126 LMRHNIE--WIKDLSLAVIDEIHLIGDNERGGTLEVILTK-LKNINA-----QIVGLSAT 177
Query: 670 LPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQ--------QYIGIQ--VKKPLQRFQLM 719
+ N E++A +L L + +RPV L + YI Q KK + + +
Sbjct: 178 VGNPEEIANWLNAKL------VTDEWRPVELKKGIYLENEINYINNQDSQKKSFKAVKSI 231
Query: 720 --NDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKE------DS 771
N+L V +V K LIF +S++ ++ L ++L + +S
Sbjct: 232 SRNNLTDLIVDSVNEKGSCLIFCNSKRNAVGESKK--------HNLTKYLSKAELNDLNS 283
Query: 772 VSREIL---QSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTA 828
+S EIL ++ T+ KS L + + G A HHAG+T R+ VE+ F + ++V+ T
Sbjct: 284 ISEEILSILETPTETCKS--LSECIKKGVAFHHAGLTYQHRKAVEEGFRNKVIKVICCTP 341
Query: 829 TLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888
TL+ G+NLP II+ + Y+ + ++ L+I Q +GRAGRP D YGEGII+ +
Sbjct: 342 TLSAGLNLPCRRAIIRDIRRYS--QNGLIDIPKLEIHQCIGRAGRPGLDPYGEGIILAKN 399
Query: 889 SE--LRYYLSLMNQQLPIESQFVSKLADQLNAEI-VLGT-----VQNAKEACNWIGYTYL 940
+ + +L+L P+E+ + SKL++Q + +LG +++ E N+I T+
Sbjct: 400 EKDVEKAFLALTG---PLENIY-SKLSNQKVLRVHILGLIATLEIKSTSELINFIKNTF- 454
Query: 941 YIRMLRNPALYGLAP---------------EVLKEDITLGERRADLVHTAATILDRNNLV 985
Y N L+G+ E L +D T + R T+ + NNLV
Sbjct: 455 YAHQYGN--LHGVLTNVSKVVEFLEKNKFIETLDDDFTPKKNRV----LELTLDNSNNLV 508
Query: 986 KYDRK------SGYFQVTDLGRIASYYYI----SHGTISTYNEHLKPTMGDIE------- 1028
++ + F+ T+LG+ S YI S I NE LK + D++
Sbjct: 509 LDSKRRMDTLTNLSFKPTNLGKRVSELYIDPLSSEIIIEGLNE-LKEKINDMDRSNIDQY 567
Query: 1029 LCRLFSLSEEFK-YVTVRQDEKMELAKLLDRVPI 1061
+ + S + E + + V+ DE++EL + +D++ I
Sbjct: 568 IFYIISKATEMRPLLRVKMDEELELIQEMDKLKI 601
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 121/434 (27%), Positives = 208/434 (47%), Gaps = 65/434 (14%)
Query: 1338 GFKHFNPIQTQVFTV-LYNTDDNVLVAAPTGSGKTICSEFAILRNH---QKASETGVMRA 1393
G + P Q +V L + N L+ PT SGKT+ E A+L NH + + TG +
Sbjct: 12 GIEELRPPQKKVIEEGLLDKSKNFLICIPTASGKTLIGEMALL-NHVLDENYNLTG-KKG 69
Query: 1394 VYIAPLEALAKERYRDWEIK---FGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWD 1450
++I PL+ALA E++ +++ K +G +GM + + +T D L K III+T EK D
Sbjct: 70 LFIVPLKALASEKFDEFQKKYETYGIKVGMSIGDY--DTKED---LSKYNIIITTSEKLD 124
Query: 1451 ALSRRWKQRKYVQQVSLFIIDELHLIG-GQGGPVLEVIVSRMRYIASQVENKIRIVALST 1509
+L R ++++ +SL +IDE+HLIG + G LEVI+++++ I +Q IV LS
Sbjct: 125 SLMRH--NIEWIKDLSLAVIDEIHLIGDNERGGTLEVILTKLKNINAQ------IVGLSA 176
Query: 1510 SLANAKDLGEWIGATSHGLFNFPPGVRPVPLE-----------IHIQGVDITNFEARMQA 1558
++ N +++ W+ A RPV L+ I+ Q +F+A +++
Sbjct: 177 TVGNPEEIANWLNAKL-----VTDEWRPVELKKGIYLENEINYINNQDSQKKSFKA-VKS 230
Query: 1559 MTKPTFTAIVQHAKNEK-PALVFVPSRKYV-----------RLTAVDLMTYSSMDGDQKS 1606
+++ T ++ + NEK L+F S++ L+ +L +S+ ++
Sbjct: 231 ISRNNLTDLIVDSVNEKGSCLIFCNSKRNAVGESKKHNLTKYLSKAELNDLNSI-SEEIL 289
Query: 1607 AFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMS 1666
+ L P E + L ++ GV + H GL ++ V F IKV +
Sbjct: 290 SILETPTETCKS---------LSECIKKGVAFHHAGLTYQHRKAVEEGFRNKVIKVICCT 340
Query: 1667 SSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCH 1726
++ G+ L ++ + Y +N D P ++ Q +G A RP LD G+ +IL
Sbjct: 341 PTLSAGLNLPCRRAIIRDIRRY--SQNGLIDIPKLEIHQCIGRAGRPGLDPYGEGIILAK 398
Query: 1727 APRKEYYKKFLRLT 1740
K+ K FL LT
Sbjct: 399 N-EKDVEKAFLALT 411
>sp|A3MSA1|HELS_PYRCJ Putative ski2-type helicase OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=Pcal_0078 PE=3 SV=1
Length = 708
Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 138/420 (32%), Positives = 221/420 (52%), Gaps = 38/420 (9%)
Query: 477 IKISEMPEWAQPAF----KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTI 532
+++SE+P A+ +G+ +L Q ++ + ++LLC T +GK+ +A
Sbjct: 1 MEVSELPLDARLIAVLKERGVGRLFPPQVEAVRAGIFDGRSVLLCTATASGKSLLA---- 56
Query: 533 LQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR 592
+ A+ +G +Y P+KAL E + + S + VKV +GD
Sbjct: 57 -EVAAVKAGLEGRMA------LYAVPLKALAYEKLVHFSYYRGL--VKVGVSTGDFDSDD 107
Query: 593 QQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTV 651
+++ E ++V T EK D + R + + LV ++++DEIH L D RGPVLESIVA+ +
Sbjct: 108 RRLHEFDVVVVTYEKLDSLLRHRPN--WLGLVGVVVVDEIHYLGDPRRGPVLESIVAK-L 164
Query: 652 RQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ-YIGIQVK 710
R + + I GLSAT+ N +VA +L L ++S+RPVPL + Y G ++
Sbjct: 165 RHLGLKTQFI---GLSATVGNAGEVAAWLGARL------VESSWRPVPLREGVYHGGVIR 215
Query: 711 ---KPLQRFQLMNDLCYEKVV-AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRF 766
+QR D V AVAG Q L+F +SR T + A+A+ + R
Sbjct: 216 FSDGSMQRVNAPGDAEVALAVDAVAGGGQALVFTNSRSSTVRLAKAVAKAMEAAGLVPRG 275
Query: 767 LKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVS 826
K +++ E+L++ + + +L DL+ G A H+AG+ R+LVED F G ++V+VS
Sbjct: 276 AK--ALAEEVLKASSSKIIGRELADLVARGVAFHNAGLELEVRRLVEDGFRRGLLKVVVS 333
Query: 827 TATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT 886
T TLA GVNLPA V++ + ++P G E+ L+ QM GRAGRP D YGE +++
Sbjct: 334 TTTLAAGVNLPARRVVVADYERFDPALGR-EEIPVLEYRQMAGRAGRPGLDPYGEAVLVA 392
Score = 105 bits (261), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 117/407 (28%), Positives = 189/407 (46%), Gaps = 35/407 (8%)
Query: 1337 QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYI 1396
+G P Q + +VL+ T SGK++ +E A + KA G M A+Y
Sbjct: 19 RGVGRLFPPQVEAVRAGIFDGRSVLLCTATASGKSLLAEVAAV----KAGLEGRM-ALYA 73
Query: 1397 APLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRW 1456
PL+ALA E+ + + +GL ++V TG+ D + L + +++ T EK D+L R
Sbjct: 74 VPLKALAYEKLVHF--SYYRGL-VKVGVSTGDFDSDDRRLHEFDVVVVTYEKLDSLLR-- 128
Query: 1457 KQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAK 1515
+ ++ V + ++DE+H +G + GPVLE IV+++R++ K + + LS ++ NA
Sbjct: 129 HRPNWLGLVGVVVVDEIHYLGDPRRGPVLESIVAKLRHLGL----KTQFIGLSATVGNAG 184
Query: 1516 DLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNF-EARMQAMTKPTFTAI---VQHA 1571
++ W+GA RPVPL + + F + MQ + P + V
Sbjct: 185 EVAAWLGARL-----VESSWRPVPLREGVYHGGVIRFSDGSMQRVNAPGDAEVALAVDAV 239
Query: 1572 KNEKPALVFVPSRK-YVRLTAVDLMTYSSMDGDQKSAFLLWPAEEV-EPFIDNIQEEMLK 1629
ALVF SR VRL + + A L AEEV + I L
Sbjct: 240 AGGGQALVFTNSRSSTVRLAKAVAKAMEAAGLVPRGAKAL--AEEVLKASSSKIIGRELA 297
Query: 1630 ATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYD 1689
+ GV + + GL + +V F G +KV V ++++ GV L A VVV + +D
Sbjct: 298 DLVARGVAFHNAGLELEVRRLVEDGFRRGLLKVVVSTTTLAAGVNLPARRVVVADYERFD 357
Query: 1690 ---GQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYY 1733
G+E + PV + QM G A RP LD G+ V++ + + Y
Sbjct: 358 PALGRE----EIPVLEYRQMAGRAGRPGLDPYGEAVLVARSKGEAEY 400
>sp|Q9V0A9|HELS_PYRAB Putative ski2-type helicase OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=PYRAB08810 PE=3 SV=1
Length = 715
Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 129/405 (31%), Positives = 209/405 (51%), Gaps = 40/405 (9%)
Query: 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
+G+ +L Q+ S + +N+L+ PT +GKT +A + I +L ++G
Sbjct: 19 RGIEELYPPQAEALTSGVLEGENLLVAIPTASGKTLIAEIAIANKLL----EEGG----- 69
Query: 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDI 610
K VY+ P+KAL E + + +KV +GD + + + II+ T EK+D
Sbjct: 70 -KAVYIVPLKALAEEKFREFKD-WERLGLKVAMATGDYDSKDEWLGKYDIIIATAEKFDS 127
Query: 611 ITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
+ R ++ + VK+L+IDEIHL+ +RG LE I+ + + + + ++GLSAT
Sbjct: 128 LLRHGS--SWIRDVKMLVIDEIHLIGSRDRGATLEFIITQMLGRAQ-------IIGLSAT 178
Query: 670 LPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ--YIGIQVKKP--LQRFQLMNDLCYE 725
+ N E++A +L L + +RPV L + Y G + +R+ +L Y+
Sbjct: 179 IGNPEELAEWLNAKL------IRSDWRPVKLRKGVFYQGFVFWEDGGSERYNSWEELVYD 232
Query: 726 KVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVK 785
AV L+FV+ R++ KTA + + L R KE RE+ +S +
Sbjct: 233 ---AVKKGKGALVFVNMRRKAEKTALELAKKV--KNYLDR--KELRELRELAESLEENPT 285
Query: 786 SNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKG 845
+ L L G A HHAG+ R +R LVED F G ++V+V+T TL+ G+N PA VII+
Sbjct: 286 NEKLAKALLSGVAFHHAGLGRDERVLVEDNFRKGLIKVVVATPTLSAGINTPAFRVIIRD 345
Query: 846 TQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890
T Y+ + + L++ QM+GRAGRP+YD GE II++ E
Sbjct: 346 TWRYS--EFGMERIPVLEVQQMMGRAGRPRYDEVGEAIIVSTTEE 388
Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 130/400 (32%), Positives = 193/400 (48%), Gaps = 45/400 (11%)
Query: 1337 QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYI 1396
+G + P Q + T +N+LVA PT SGKT+ +E AI K E G +AVYI
Sbjct: 19 RGIEELYPPQAEALTSGVLEGENLLVAIPTASGKTLIAEIAI---ANKLLEEG-GKAVYI 74
Query: 1397 APLEALAKERYR---DWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALS 1453
PL+ALA+E++R DWE LG++V TG+ + L K III+T EK+D+L
Sbjct: 75 VPLKALAEEKFREFKDWE-----RLGLKVAMATGDYDSKDEWLGKYDIIIATAEKFDSLL 129
Query: 1454 RRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512
R +++ V + +IDE+HLIG + G LE I+++M + +I+ LS ++
Sbjct: 130 RH--GSSWIRDVKMLVIDEIHLIGSRDRGATLEFIITQML-------GRAQIIGLSATIG 180
Query: 1513 NAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNF-------EARMQAMTKPTFT 1565
N ++L EW+ A RPV L +GV F R + + +
Sbjct: 181 NPEELAEWLNAKL-----IRSDWRPVKLR---KGVFYQGFVFWEDGGSERYNSWEELVYD 232
Query: 1566 AIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQE 1625
A+ K K ALVFV R+ TA++L D+K L E E +N
Sbjct: 233 AV----KKGKGALVFVNMRRKAEKTALELAKKVKNYLDRKELREL--RELAESLEENPTN 286
Query: 1626 EMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGT 1685
E L L GV + H GL + ++ +V F G IKV V + ++ G+ A V++ T
Sbjct: 287 EKLAKALLSGVAFHHAGLGRDERVLVEDNFRKGLIKVVVATPTLSAGINTPAFRVIIRDT 346
Query: 1686 QYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILC 1725
Y E PV ++ QMMG A RP D G+ +I+
Sbjct: 347 WRY--SEFGMERIPVLEVQQMMGRAGRPRYDEVGEAIIVS 384
>sp|Q97VY9|HELS_SULSO Putative ski2-type helicase OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=SSO2462 PE=1 SV=1
Length = 708
Score = 165 bits (417), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 145/447 (32%), Positives = 217/447 (48%), Gaps = 61/447 (13%)
Query: 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
+G+ +LN Q+ K L + +LL +PTG+GKT +A + I+ L N
Sbjct: 19 RGIKKLNPPQTEAVKKGLLDGNRLLLTSPTGSGKTLIAEMGIISFLLKNGG--------- 69
Query: 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDI 610
K +YV P++AL E + + KV SGD ++ II+TT EK D
Sbjct: 70 -KAIYVTPLRALTNEKYLTFKD-WESIGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDS 127
Query: 611 ITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
+ R D + ++DE+H L+D RGPV+ES+ R R+ L+ LSAT
Sbjct: 128 LWRHRPD--WLNEANYFVLDELHYLNDPERGPVVESVTIRAKRR--------NLLALSAT 177
Query: 670 LPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVV- 728
+ NY+ +A +L G ++RPVPL + + + KK + L D KV
Sbjct: 178 ISNYKQIAKWL------GAEPVATNWRPVPLMEGVMYPERKKK-EYTILFRDNTARKVHG 230
Query: 729 ----------AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQ 778
+++ QVL+F +SRK TA I N L E ++S EIL+
Sbjct: 231 DDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKI-----ANYMNFVSLDEKAIS-EILK 284
Query: 779 SHTDMVKSND-----LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWG 833
D+ + LK L+ G A HHAG+++ R ++E+ F ++V+V+T TLA G
Sbjct: 285 QLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDIIEESFRKRKIKVIVATPTLAAG 344
Query: 834 VNLPAHTVIIKGTQIYNPE-KGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE-- 890
VNLPA TVII +N + G + E+ ++ QM GRAGRP +D GE II+ E
Sbjct: 345 VNLPARTVIIGDIYRFNRKIVGYYDEIPVMEYKQMSGRAGRPGFDQIGESIIVVRDKEDV 404
Query: 891 ----LRYYLSLMNQQLPIESQFVSKLA 913
+Y LS + PIES+ S+ A
Sbjct: 405 DRVFKKYILSDVE---PIESKLGSERA 428
Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 119/414 (28%), Positives = 196/414 (47%), Gaps = 57/414 (13%)
Query: 1337 QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYI 1396
+G K NP QT+ + +L+ +PTGSGKT+ +E I+ K +A+Y+
Sbjct: 19 RGIKKLNPPQTEAVKKGLLDGNRLLLTSPTGSGKTLIAEMGIISFLLKNGG----KAIYV 74
Query: 1397 APLEALAKERY---RDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALS 1453
PL AL E+Y +DWE +G +V +G+ D L+ III+T EK D+L
Sbjct: 75 TPLRALTNEKYLTFKDWE-----SIGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSL- 128
Query: 1454 RRWKQR-KYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQVENKIRIVALSTSL 1511
W+ R ++ + + F++DELH + + GPV+E + R + + ++ALS ++
Sbjct: 129 --WRHRPDWLNEANYFVLDELHYLNDPERGPVVESVTIRAK--------RRNLLALSATI 178
Query: 1512 ANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHA 1571
+N K + +W+GA RPVPL ++GV + + + TA H
Sbjct: 179 SNYKQIAKWLGAEP-----VATNWRPVPL---MEGVMYPERKKKEYTILFRDNTARKVHG 230
Query: 1572 KNEKPA------------LVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPF 1619
+ A LVF SRK TA+ + Y + + A E+
Sbjct: 231 DDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDEKAI-----SEILKQ 285
Query: 1620 IDNIQE------EMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGV 1673
+D+I+E E+LK+ + GV Y H GL+K ++++ F KIKV V + ++ GV
Sbjct: 286 LDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDIIEESFRKRKIKVIVATPTLAAGV 345
Query: 1674 PLTAHLVVVMGTQYYDGQENAHTD-YPVTDLLQMMGHASRPLLDNSGKCVILCH 1726
L A V++ ++ + + D PV + QM G A RP D G+ +I+
Sbjct: 346 NLPARTVIIGDIYRFNRKIVGYYDEIPVMEYKQMSGRAGRPGFDQIGESIIVVR 399
>sp|Q3IU46|HELS_NATPD Putative ski2-type helicase OS=Natronomonas pharaonis (strain DSM
2160 / ATCC 35678) GN=NP_0492A PE=3 SV=1
Length = 747
Score = 165 bits (417), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 150/548 (27%), Positives = 258/548 (47%), Gaps = 61/548 (11%)
Query: 478 KISEMPEWAQPAFK--GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQ 535
++S +P W + G+ L Q+ + ++ ++++ PT +GKT VA L +L
Sbjct: 5 EVSGVPPWFADHLREEGIESLYPPQAAAVDAGVADGESLVASVPTASGKTLVAQLAMLS- 63
Query: 536 LALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQI 595
A++R +Y+ P++AL +E + + Y + V +G T + +
Sbjct: 64 -AIDRGG---------TALYIVPLRALASEKREEFAA-FEEYGLSVGVTTGSYEDTGEWL 112
Query: 596 EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQI 654
+ IIV T EK D + R + + ++ DE+HL+ D +RGP LE +A+ R
Sbjct: 113 ADKDIIVATSEKVDSLVRNGA--PWIDDLDCVVADEVHLVDDEHRGPTLEVTLAKLRR-- 168
Query: 655 ETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQ-----QYI---- 705
++++V LSAT+ N ++A +L L D+S+RP+ L + Q +
Sbjct: 169 --VNPNLQVVALSATVGNAGEMAEWLDAEL------VDSSWRPIELRKGVHYGQALHFGD 220
Query: 706 GIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGR 765
G Q + P+QR + + + + G L+FV+SR+ A+ + T ++
Sbjct: 221 GTQQELPVQRTEKPTEAVVRETLDEGGS--TLVFVNSRRNAEGAAKRLAKTTVDGLDADE 278
Query: 766 FLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLV 825
S++ EI ++ +D S+DL D + G A HHAG + R LVED F D ++ +
Sbjct: 279 RAALSSLAEEI-RAVSDTETSDDLADCVEQGAAFHHAGCSSEHRSLVEDAFRDRLIKTIC 337
Query: 826 STATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885
+T TLA GVN PA V+++ + Y+ + G LS L++ QM+GRAGRP D YGE +++
Sbjct: 338 ATPTLAAGVNTPARRVVVRDWRRYSGDAGGMQPLSVLEVHQMMGRAGRPGRDPYGEAVLL 397
Query: 886 T-GHSELRYYLS--LMNQQLPIESQFVSK--LADQLNAEIVLGTVQNAKEACNWIGYTYL 940
H EL L + P+ES+ + + L A + G + +++ T L
Sbjct: 398 ADSHDELDELLDRYVWADPEPVESKLAREPSMRTHLLATVASGFADSRSALLSFLDRT-L 456
Query: 941 YIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLG 1000
Y R +G + L+ +V T + L+ N + DR + TDLG
Sbjct: 457 YATQYR----HGDGEDNLER----------VVDTTLSYLETNGFI--DRDGDAIEATDLG 500
Query: 1001 RIASYYYI 1008
S Y+
Sbjct: 501 HTVSRLYL 508
Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 145/583 (24%), Positives = 244/583 (41%), Gaps = 80/583 (13%)
Query: 1337 QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYI 1396
+G + P Q ++++ + PT SGKT+ ++ A+L + A+YI
Sbjct: 20 EGIESLYPPQAAAVDAGVADGESLVASVPTASGKTLVAQLAMLSAIDRGG-----TALYI 74
Query: 1397 APLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRW 1456
PL ALA E+ ++ GL + V TG + L II++T EK D+L R
Sbjct: 75 VPLRALASEKREEFAAFEEYGLSVGVT--TGSYEDTGEWLADKDIIVATSEKVDSLVR-- 130
Query: 1457 KQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIASQVENKIRIVALSTSLANAK 1515
++ + + DE+HL+ + GP LEV ++++R +V +++VALS ++ NA
Sbjct: 131 NGAPWIDDLDCVVADEVHLVDDEHRGPTLEVTLAKLR----RVNPNLQVVALSATVGNAG 186
Query: 1516 DLGEWIGATSHGLFNFPPGVRPVPLE--IH----IQGVDITNFEARMQAMTKPTFTAIVQ 1569
++ EW+ A RP+ L +H + D T E +Q KPT + +
Sbjct: 187 EMAEWLDAEL-----VDSSWRPIELRKGVHYGQALHFGDGTQQELPVQRTEKPTEAVVRE 241
Query: 1570 HAKNEKPALVFVPSRKYVRLTAVDL--MTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEM 1627
LVFV SR+ A L T +D D+++A L AEE+ D +
Sbjct: 242 TLDEGGSTLVFVNSRRNAEGAAKRLAKTTVDGLDADERAA-LSSLAEEIRAVSDTETSDD 300
Query: 1628 LKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQY 1687
L + G + H G + + +V F IK + ++ GV A VVV +
Sbjct: 301 LADCVEQGAAFHHAGCSSEHRSLVEDAFRDRLIKTICATPTLAAGVNTPARRVVVRDWRR 360
Query: 1688 YDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILC--HAPRKEYYKKFL-------- 1737
Y G V ++ QMMG A RP D G+ V+L H E +++
Sbjct: 361 YSGDAGGMQPLSVLEVHQMMGRAGRPGRDPYGEAVLLADSHDELDELLDRYVWADPEPVE 420
Query: 1738 -RLTQNPNY------------------------YNLQGVSHRHLS--DHLSELVENTISD 1770
+L + P+ L +RH D+L +V+ T+S
Sbjct: 421 SKLAREPSMRTHLLATVASGFADSRSALLSFLDRTLYATQYRHGDGEDNLERVVDTTLSY 480
Query: 1771 LEASKCIIIEEDMDLSPSNHGMIASYYYI----SYTTIERFSSSLTPKTRMKGLLEVLAS 1826
LE + I + D + ++ G S Y+ + I+ + + +P T M GL +++A
Sbjct: 481 LETNGFIDRDGDA-IEATDLGHTVSRLYLDPMSAAEIIDGLADAASP-TAM-GLYQLVAR 537
Query: 1827 ASEYAQLPIRPGEEEVVRRLIHHQRF--------SFENPKFTD 1861
+ +L +R G+ E L + + FE +F D
Sbjct: 538 TPDMYELYLRSGDREEYTMLAYEREAELLGELPSEFEEGRFED 580
>sp|Q974S1|HELS_SULTO Putative ski2-type helicase OS=Sulfolobus tokodaii (strain DSM
16993 / JCM 10545 / NBRC 100140 / 7) GN=STK_05900 PE=3
SV=1
Length = 704
Score = 164 bits (416), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 143/445 (32%), Positives = 211/445 (47%), Gaps = 58/445 (13%)
Query: 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
+G+ LN QS + L +L+ +PT +GKT +A L ++ L
Sbjct: 22 RGIRTLNPPQSEAIRKGLLDGKRLLVTSPTASGKTLIAELGMINYLL----------SKG 71
Query: 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDI 610
K +Y+ P++AL E + + +K SGD +E IIVTT EK D
Sbjct: 72 GKAIYITPLRALTNEKYNTFKD-WETLGIKTGMTSGDYDTDDAWLENYDIIVTTYEKLDS 130
Query: 611 ITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
+ R + V ++DE H L+D RGP +ES+ R K+ ++GLSAT
Sbjct: 131 LWRHKA--KWLNEVSYFVLDEFHYLNDPERGPTVESVAIRA-------KKRGIVLGLSAT 181
Query: 670 LPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI-----GIQV--KKPLQRFQLMNDL 722
+ N +++A +L L ++RPVPL + I G V K R +D
Sbjct: 182 ISNGKEIANWLNAEL------VATNWRPVPLKEGIIYPEKKGFVVVYKDNTSRKVYGDDA 235
Query: 723 CYEKVVAVAGKH-QVLIFVHSRKETAKTARAIRD----TALENDTL---GRFLKE--DSV 772
+ + K QVL+F SRK TAR I LE+ L R +KE D+
Sbjct: 236 IIAYTLDIVSKGGQVLVFRSSRKLAENTARKIVQYMNFVKLEDKKLLEIARKIKEVEDAG 295
Query: 773 SREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAW 832
S E DL +L+ G A HHAG+++G R ++E F D ++V+V+T TLA
Sbjct: 296 SNE----------KEDLYNLVLRGVAYHHAGLSKGLRDIIESSFRDRILKVIVATPTLAA 345
Query: 833 GVNLPAHTVIIKGTQIYNPEKGAWTELSP-LDIMQMLGRAGRPQYDSYGEGIIITGH--- 888
GVNLPA V+I YN + + +L P +D QM GRAGRP +D GE +++ +
Sbjct: 346 GVNLPARAVVIGDIYRYNRKVVGYMDLIPVMDYKQMSGRAGRPGFDENGEAVVVVRNKRE 405
Query: 889 SELRYYLSLMNQQLPIESQFVSKLA 913
+E Y LM+ PIES+ S+ A
Sbjct: 406 AEKVYERYLMSDVEPIESKLGSESA 430
Score = 141 bits (355), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 121/419 (28%), Positives = 202/419 (48%), Gaps = 44/419 (10%)
Query: 1337 QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYI 1396
+G + NP Q++ +LV +PT SGKT+ +E ++ + S+ G +A+YI
Sbjct: 22 RGIRTLNPPQSEAIRKGLLDGKRLLVTSPTASGKTLIAELGMI--NYLLSKGG--KAIYI 77
Query: 1397 APLEALAKERY---RDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALS 1453
PL AL E+Y +DWE LG++ +G+ D LE II++T EK D+L
Sbjct: 78 TPLRALTNEKYNTFKDWET-----LGIKTGMTSGDYDTDDAWLENYDIIVTTYEKLDSL- 131
Query: 1454 RRWKQR-KYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQVENKIRIVALSTSL 1511
W+ + K++ +VS F++DE H + + GP +E + R + + ++ LS ++
Sbjct: 132 --WRHKAKWLNEVSYFVLDEFHYLNDPERGPTVESVAIRAK-------KRGIVLGLSATI 182
Query: 1512 ANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTF---TAIV 1568
+N K++ W+ A RPVPL+ I + F + T AI+
Sbjct: 183 SNGKEIANWLNAEL-----VATNWRPVPLKEGIIYPEKKGFVVVYKDNTSRKVYGDDAII 237
Query: 1569 QHA----KNEKPALVFVPSRKYVRLTA---VDLMTYSSMDGDQKSAFLLWPAEEVEPFID 1621
+ LVF SRK TA V M + ++ D+K + +EVE
Sbjct: 238 AYTLDIVSKGGQVLVFRSSRKLAENTARKIVQYMNFVKLE-DKKLLEIARKIKEVEDAGS 296
Query: 1622 NIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVV 1681
N +E++ LR GV Y H GL+K ++++ + F +KV V + ++ GV L A VV
Sbjct: 297 NEKEDLYNLVLR-GVAYHHAGLSKGLRDIIESSFRDRILKVIVATPTLAAGVNLPARAVV 355
Query: 1682 VMGTQYYDGQENAHTDY-PVTDLLQMMGHASRPLLDNSGKCVILCHAPR--KEYYKKFL 1737
+ Y+ + + D PV D QM G A RP D +G+ V++ R ++ Y+++L
Sbjct: 356 IGDIYRYNRKVVGYMDLIPVMDYKQMSGRAGRPGFDENGEAVVVVRNKREAEKVYERYL 414
>sp|Q9HMV6|HELS_HALSA Putative ski2-type helicase OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=VNG_2368G PE=3 SV=1
Length = 783
Score = 163 bits (413), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 142/551 (25%), Positives = 248/551 (45%), Gaps = 54/551 (9%)
Query: 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
+G+ +L Q+ + ++ N++ PT +GKT +A L +L +A D +F+ +
Sbjct: 20 EGVEELYPPQAEAVERGVTEGANLVASVPTASGKTLIAQLAMLSAIA-EGGDSPTFS-GD 77
Query: 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDI 610
+Y+ P++AL E + + + V +G+ ++ + I+V T EK D
Sbjct: 78 GTALYIVPLRALAGEKAQEFEA-FERFGLSVGVSTGNYERDGARLADNDIVVATSEKVDS 136
Query: 611 ITRKSGDRTYTQLVKLLIIDEIHLLHDN-RGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
+ R + + ++ DE+HL+ D+ RGP LE +A+ +Q+ +++V LSAT
Sbjct: 137 LVRNGA--GWIDDLSCVVADEVHLVDDDHRGPTLEVTLAKLRQQVA----DLQVVALSAT 190
Query: 670 LPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQ-------RFQLMNDL 722
+ N ++A +L L D+ +RP+ L G+ + L + +
Sbjct: 191 VGNAGELAAWLDAEL------VDSDWRPIELR---TGVHYGQSLHYDDGTQAELSVGSGS 241
Query: 723 CYEKVVA--VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSH 780
VVA +A L+FV+SR+ +AR + D + + ++ EI +
Sbjct: 242 QTAAVVADTLADDGSTLVFVNSRRNAEASARRLADVTGNALSSAERERLADIAAEI-RGV 300
Query: 781 TDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHT 840
+D S++L D + G A HHAG+ R R+LVE+ F D V+ + +T TLA GVN PA
Sbjct: 301 SDTETSDELADAVASGAAFHHAGLAREHRELVEEAFRDRLVKAVSATPTLAAGVNTPARR 360
Query: 841 VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT-GHSELRYYLS--L 897
V+++ Q Y+ G L L++ QM GRAGRP D YGE +++ H EL +
Sbjct: 361 VVVRDWQRYDGTAGGMQPLDVLEVHQMFGRAGRPGLDPYGEAVLLANSHDELEELFDRYV 420
Query: 898 MNQQLPIESQFVSK--LADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAP 955
P+ S+ ++ L + A I G ++G T + L +
Sbjct: 421 YADPEPVRSKLAAEPALRTHVLAAIATGFTTTEDGLHEFLGGTLYATQTDDTGRLRSVTG 480
Query: 956 EVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTIST 1015
+VL+ LDRN V+ R + T G++ S Y+ + +T
Sbjct: 481 DVLR------------------YLDRNGFVE--RDGAALRATATGQLVSRLYVDPMSAAT 520
Query: 1016 YNEHLKPTMGD 1026
+ L+ D
Sbjct: 521 IIDGLRDAARD 531
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 112/423 (26%), Positives = 191/423 (45%), Gaps = 32/423 (7%)
Query: 1337 QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASET----GVMR 1392
+G + P Q + N++ + PT SGKT+ ++ A+L + ++ G
Sbjct: 20 EGVEELYPPQAEAVERGVTEGANLVASVPTASGKTLIAQLAMLSAIAEGGDSPTFSGDGT 79
Query: 1393 AVYIAPLEALAKERYRDWEI--KFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWD 1450
A+YI PL ALA E+ +++E +FG +G+ TG D L I+++T EK D
Sbjct: 80 ALYIVPLRALAGEKAQEFEAFERFGLSVGVS----TGNYERDGARLADNDIVVATSEKVD 135
Query: 1451 ALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQVENKIRIVALST 1509
+L R ++ +S + DE+HL+ GP LEV ++++R QV + +++VALS
Sbjct: 136 SLVRNGA--GWIDDLSCVVADEVHLVDDDHRGPTLEVTLAKLR---QQVAD-LQVVALSA 189
Query: 1510 SLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQA-----MTKPTF 1564
++ NA +L W+ A RP+ L + +++ QA T
Sbjct: 190 TVGNAGELAAWLDAEL-----VDSDWRPIELRTGVHYGQSLHYDDGTQAELSVGSGSQTA 244
Query: 1565 TAIVQHAKNEKPALVFVPSRKYVRLTAVDL--MTYSSMDGDQKSAFLLWPAEEVEPFIDN 1622
+ ++ LVFV SR+ +A L +T +++ ++ L A E+ D
Sbjct: 245 AVVADTLADDGSTLVFVNSRRNAEASARRLADVTGNALSSAERE-RLADIAAEIRGVSDT 303
Query: 1623 IQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVV 1682
+ L + G + H GL + +E+V F +K + ++ GV A VVV
Sbjct: 304 ETSDELADAVASGAAFHHAGLAREHRELVEEAFRDRLVKAVSATPTLAAGVNTPARRVVV 363
Query: 1683 MGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILC--HAPRKEYYKKFLRLT 1740
Q YDG V ++ QM G A RP LD G+ V+L H +E + +++
Sbjct: 364 RDWQRYDGTAGGMQPLDVLEVHQMFGRAGRPGLDPYGEAVLLANSHDELEELFDRYVYAD 423
Query: 1741 QNP 1743
P
Sbjct: 424 PEP 426
>sp|B0R7Q2|HELS_HALS3 Putative ski2-type helicase OS=Halobacterium salinarum (strain ATCC
29341 / DSM 671 / R1) GN=OE_4325F PE=3 SV=1
Length = 783
Score = 163 bits (413), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 142/551 (25%), Positives = 248/551 (45%), Gaps = 54/551 (9%)
Query: 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
+G+ +L Q+ + ++ N++ PT +GKT +A L +L +A D +F+ +
Sbjct: 20 EGVEELYPPQAEAVERGVTEGANLVASVPTASGKTLIAQLAMLSAIA-EGGDSPTFS-GD 77
Query: 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDI 610
+Y+ P++AL E + + + V +G+ ++ + I+V T EK D
Sbjct: 78 GTALYIVPLRALAGEKAQEFEA-FERFGLSVGVSTGNYERDGARLADNDIVVATSEKVDS 136
Query: 611 ITRKSGDRTYTQLVKLLIIDEIHLLHDN-RGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
+ R + + ++ DE+HL+ D+ RGP LE +A+ +Q+ +++V LSAT
Sbjct: 137 LVRNGA--GWIDDLSCVVADEVHLVDDDHRGPTLEVTLAKLRQQVA----DLQVVALSAT 190
Query: 670 LPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQ-------RFQLMNDL 722
+ N ++A +L L D+ +RP+ L G+ + L + +
Sbjct: 191 VGNAGELAAWLDAEL------VDSDWRPIELR---TGVHYGQSLHYDDGTQAELSVGSGS 241
Query: 723 CYEKVVA--VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSH 780
VVA +A L+FV+SR+ +AR + D + + ++ EI +
Sbjct: 242 QTAAVVADTLADDGSTLVFVNSRRNAEASARRLADVTGNALSSAERERLADIAAEI-RGV 300
Query: 781 TDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHT 840
+D S++L D + G A HHAG+ R R+LVE+ F D V+ + +T TLA GVN PA
Sbjct: 301 SDTETSDELADAVASGAAFHHAGLAREHRELVEEAFRDRLVKAVSATPTLAAGVNTPARR 360
Query: 841 VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT-GHSELRYYLS--L 897
V+++ Q Y+ G L L++ QM GRAGRP D YGE +++ H EL +
Sbjct: 361 VVVRDWQRYDGTAGGMQPLDVLEVHQMFGRAGRPGLDPYGEAVLLANSHDELEELFDRYV 420
Query: 898 MNQQLPIESQFVSK--LADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAP 955
P+ S+ ++ L + A I G ++G T + L +
Sbjct: 421 YADPEPVRSKLAAEPALRTHVLAAIATGFTTTEDGLHEFLGGTLYATQTDDTGRLRSVTG 480
Query: 956 EVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTIST 1015
+VL+ LDRN V+ R + T G++ S Y+ + +T
Sbjct: 481 DVLR------------------YLDRNGFVE--RDGAALRATATGQLVSRLYVDPMSAAT 520
Query: 1016 YNEHLKPTMGD 1026
+ L+ D
Sbjct: 521 IIDGLRDAARD 531
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 112/423 (26%), Positives = 191/423 (45%), Gaps = 32/423 (7%)
Query: 1337 QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASET----GVMR 1392
+G + P Q + N++ + PT SGKT+ ++ A+L + ++ G
Sbjct: 20 EGVEELYPPQAEAVERGVTEGANLVASVPTASGKTLIAQLAMLSAIAEGGDSPTFSGDGT 79
Query: 1393 AVYIAPLEALAKERYRDWEI--KFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWD 1450
A+YI PL ALA E+ +++E +FG +G+ TG D L I+++T EK D
Sbjct: 80 ALYIVPLRALAGEKAQEFEAFERFGLSVGVS----TGNYERDGARLADNDIVVATSEKVD 135
Query: 1451 ALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQVENKIRIVALST 1509
+L R ++ +S + DE+HL+ GP LEV ++++R QV + +++VALS
Sbjct: 136 SLVRNGA--GWIDDLSCVVADEVHLVDDDHRGPTLEVTLAKLR---QQVAD-LQVVALSA 189
Query: 1510 SLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQA-----MTKPTF 1564
++ NA +L W+ A RP+ L + +++ QA T
Sbjct: 190 TVGNAGELAAWLDAEL-----VDSDWRPIELRTGVHYGQSLHYDDGTQAELSVGSGSQTA 244
Query: 1565 TAIVQHAKNEKPALVFVPSRKYVRLTAVDL--MTYSSMDGDQKSAFLLWPAEEVEPFIDN 1622
+ ++ LVFV SR+ +A L +T +++ ++ L A E+ D
Sbjct: 245 AVVADTLADDGSTLVFVNSRRNAEASARRLADVTGNALSSAERE-RLADIAAEIRGVSDT 303
Query: 1623 IQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVV 1682
+ L + G + H GL + +E+V F +K + ++ GV A VVV
Sbjct: 304 ETSDELADAVASGAAFHHAGLAREHRELVEEAFRDRLVKAVSATPTLAAGVNTPARRVVV 363
Query: 1683 MGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILC--HAPRKEYYKKFLRLT 1740
Q YDG V ++ QM G A RP LD G+ V+L H +E + +++
Sbjct: 364 RDWQRYDGTAGGMQPLDVLEVHQMFGRAGRPGLDPYGEAVLLANSHDELEELFDRYVYAD 423
Query: 1741 QNP 1743
P
Sbjct: 424 PEP 426
>sp|O59025|HELS_PYRHO Putative ski2-type helicase OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=PH1280 PE=3 SV=1
Length = 715
Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 124/406 (30%), Positives = 210/406 (51%), Gaps = 42/406 (10%)
Query: 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
+G+++L Q+ S + +N L+ PT +GKT +A + I+ +L
Sbjct: 19 RGISELYPPQAEALTSGILKGENALIAIPTASGKTLIAEIAIVNRLL----------KEG 68
Query: 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDI 610
K VY+ P+KAL E + ++ +KV +GD + + II+ T EK+D
Sbjct: 69 GKAVYLVPLKALAEEKFKEFKDWEEL-GLKVAMATGDYDSKDEWLGGYDIIIATAEKFDS 127
Query: 611 ITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
+ R ++ + VK+L++DEIHL+ +RG LE I+ + + + + ++GLSAT
Sbjct: 128 LLRHGS--SWIRNVKVLVVDEIHLIGSRDRGATLEFIITQMLNRAQ-------IIGLSAT 178
Query: 670 LPNYEDVALFLRVNLEKGLFYFDNSYRPVPLS-----QQYIGIQVKKPLQRFQLMNDLCY 724
+ N E++A +L L K + +RPV L Q ++ + K ++F +L Y
Sbjct: 179 IGNPEELAEWLNAKLIK------SDWRPVKLRRGVFYQGFVFWEDGKT-EKFNSWEELVY 231
Query: 725 EKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMV 784
+ + G L+FV+ R++ KTA + + N + L+E +E+ +S +
Sbjct: 232 DAIKRSKGS---LVFVNMRRKAEKTALEL-SKKIRNFLTKKELRE---LKELAESLEENP 284
Query: 785 KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIK 844
+ L L G A HHAG+ R +R LVE+ F G ++V+V+T TL+ G+N PA VI++
Sbjct: 285 TNEKLAKALQGGVAFHHAGLGREERVLVEENFKKGLIKVVVATPTLSAGINTPAFRVIVR 344
Query: 845 GTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890
T Y+ + + L+I QM+GRAGRP+YD GE II++ E
Sbjct: 345 DTWRYS--EFGMERIPILEIQQMMGRAGRPKYDEVGEAIIVSTTEE 388
Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 125/396 (31%), Positives = 194/396 (48%), Gaps = 37/396 (9%)
Query: 1337 QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYI 1396
+G P Q + T +N L+A PT SGKT+ +E AI+ K E G +AVY+
Sbjct: 19 RGISELYPPQAEALTSGILKGENALIAIPTASGKTLIAEIAIVNRLLK--EGG--KAVYL 74
Query: 1397 APLEALAKERYR---DWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALS 1453
PL+ALA+E+++ DWE LG++V TG+ + L III+T EK+D+L
Sbjct: 75 VPLKALAEEKFKEFKDWE-----ELGLKVAMATGDYDSKDEWLGGYDIIIATAEKFDSLL 129
Query: 1454 RRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512
R +++ V + ++DE+HLIG + G LE I+++M N+ +I+ LS ++
Sbjct: 130 RH--GSSWIRNVKVLVVDEIHLIGSRDRGATLEFIITQML-------NRAQIIGLSATIG 180
Query: 1513 NAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKP--TFTAIVQH 1570
N ++L EW+ A RPV L +GV F T+ ++ +V
Sbjct: 181 NPEELAEWLNAKL-----IKSDWRPVKLR---RGVFYQGFVFWEDGKTEKFNSWEELVYD 232
Query: 1571 A-KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLK 1629
A K K +LVFV R+ TA++L +K L E E +N E L
Sbjct: 233 AIKRSKGSLVFVNMRRKAEKTALELSKKIRNFLTKKELREL--KELAESLEENPTNEKLA 290
Query: 1630 ATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYD 1689
L+ GV + H GL + ++ +V F+ G IKV V + ++ G+ A V+V T Y
Sbjct: 291 KALQGGVAFHHAGLGREERVLVEENFKKGLIKVVVATPTLSAGINTPAFRVIVRDTWRY- 349
Query: 1690 GQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILC 1725
E P+ ++ QMMG A RP D G+ +I+
Sbjct: 350 -SEFGMERIPILEIQQMMGRAGRPKYDEVGEAIIVS 384
>sp|Q97AI2|HELS_THEVO Putative ski2-type helicase OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0828 PE=3 SV=1
Length = 674
Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 126/378 (33%), Positives = 191/378 (50%), Gaps = 49/378 (12%)
Query: 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572
NI++ PT AGKT +A I + K +Y+ P+++L E LS
Sbjct: 39 NIMVSVPTAAGKTLIAYSAIYETF-----------KKKLKSIYIVPLRSLAMEKYEELS- 86
Query: 573 RLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEI 632
RL+ ++V+ G+ T I+ +++ T EK D + D + V L++IDEI
Sbjct: 87 RLRELGMRVKLSIGNYDDTPDFIKRYDVVILTSEKADSLMHH--DPYMMEEVGLMVIDEI 144
Query: 633 HLLHDN-RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYF 691
H++ D RGP LE+++ T R + R++ LSAT+ N ++A +L +L K
Sbjct: 145 HMIGDEYRGPTLETVIT-TARYVNP---ETRIIALSATVSNASEIAEWLNASLIK----- 195
Query: 692 DNSYRPVPLSQQYIGIQVKKPL-----QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKET 746
+S+RPVPL +GI + L R + +L ++ V G QVLIFV SRK
Sbjct: 196 -SSFRPVPLK---VGILYRNRLFLDGDARSDVDINLLVKETVDDGG--QVLIFVSSRKRA 249
Query: 747 AKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTR 806
A+ + L + + VS E + D+ L ++LP+G + HHAG++
Sbjct: 250 EDMAKNL-------SQLFDPINDLKVSSEDANVYDDL-----LNEMLPHGVSFHHAGLSN 297
Query: 807 GDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQ 866
R +E F ++V+V+T TLA GVNLPA VI+K Y T LS +++ Q
Sbjct: 298 EQRSFIEKAFRHRKLKVIVATPTLAAGVNLPARLVIVKDVTRYG--DLGITYLSNMEVKQ 355
Query: 867 MLGRAGRPQYDSYGEGII 884
M+GRAGRP YD YG GII
Sbjct: 356 MIGRAGRPGYDQYGIGII 373
Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 109/374 (29%), Positives = 182/374 (48%), Gaps = 44/374 (11%)
Query: 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418
N++V+ PT +GKT+ + AI +K ++++YI PL +LA E+Y E+ + L
Sbjct: 39 NIMVSVPTAAGKTLIAYSAIYETFKKK-----LKSIYIVPLRSLAMEKYE--ELSRLREL 91
Query: 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478
GMRV G +++ ++I T EK D+L +++V L +IDE+H+IG
Sbjct: 92 GMRVKLSIGNYDDTPDFIKRYDVVILTSEKADSLMHH--DPYMMEEVGLMVIDEIHMIGD 149
Query: 1479 Q-GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRP 1537
+ GP LE +++ RY+ + RI+ALS +++NA ++ EW+ A+ RP
Sbjct: 150 EYRGPTLETVITTARYVNPET----RIIALSATVSNASEIAEWLNASL-----IKSSFRP 200
Query: 1538 VPLEIHIQGVDITNFEARM----QAMTKPTFTAIVQHAKNEK-PALVFVPSRKYVRLTAV 1592
VPL++ I + R+ A + +V+ ++ L+FV SRK A
Sbjct: 201 VPLKVGIL------YRNRLFLDGDARSDVDINLLVKETVDDGGQVLIFVSSRKRAEDMAK 254
Query: 1593 DLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVS 1652
+L D K + +E+ N+ +++L L HGV + H GL+ + +
Sbjct: 255 NLSQLFDPINDLKVS-----SEDA-----NVYDDLLNEMLPHGVSFHHAGLSNEQRSFIE 304
Query: 1653 ALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMG-TQYYDGQENAHTDYPVTDLLQMMGHAS 1711
F K+KV V + ++ GV L A LV+V T+Y D ++ V QM+G A
Sbjct: 305 KAFRHRKLKVIVATPTLAAGVNLPARLVIVKDVTRYGDLGITYLSNMEVK---QMIGRAG 361
Query: 1712 RPLLDNSGKCVILC 1725
RP D G +I
Sbjct: 362 RPGYDQYGIGIIYA 375
>sp|Q9YFQ8|HELS_AERPE Putative ski2-type helicase OS=Aeropyrum pernix (strain ATCC 700893
/ DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=APE_0191.1
PE=3 SV=2
Length = 735
Score = 161 bits (407), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 133/429 (31%), Positives = 211/429 (49%), Gaps = 63/429 (14%)
Query: 481 EMPEWAQPAFKGMTQLNRV------QSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQ 534
++P WA + + +L V Q ++ + +N+++ APTG+GKT +A++ I+
Sbjct: 7 DIPSWATTETRTLAKLAGVERLFEPQYMALQAGVEKGENLVVAAPTGSGKTFIALVAIVN 66
Query: 535 QLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ 594
LA + + Y+ P+K++ E + S L +K++ GD R+
Sbjct: 67 SLA----------RAGGRAFYLVPLKSVAYEKYTSFSI-LSRMGLKLKISVGD---FREG 112
Query: 595 IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQ 653
E +++ T EK+D + R S + + V +LI+DEIH + D RGP+LESIV+R +
Sbjct: 113 PPEAPVVIATYEKFDSLLRVSP--SLARNVSVLIVDEIHSVSDPKRGPILESIVSRML-- 168
Query: 654 IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVK--- 710
+ +LVGLSAT+PN ++A ++ G ++S+RPVPL ++Y+ + K
Sbjct: 169 --ASAGEAQLVGLSATVPNAGEIAEWI------GGKIVESSWRPVPL-REYVFKEYKLYS 219
Query: 711 -----KPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGR 765
+ + R + DL A+ Q L+F +SR+ RA+ LGR
Sbjct: 220 PTGGLREVPRVYGLYDLDL-AAEAIEDGGQALVFTYSRR------RAVTLAKRAAKRLGR 272
Query: 766 FLKEDSVSREILQSHTDMVKSN--------DLKDLLPYGFAIHHAGMTRGDRQLVEDLFG 817
L SRE + ++ +L L+ G A HHAG+ R+ VE+ F
Sbjct: 273 RLS----SREARVYSAEASRAEGAPRSVAEELASLIAAGIAYHHAGLPPSLRKTVEEAFR 328
Query: 818 DGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD 877
G V+V+ ST TLA GVNLPA V+I Y E G + + QM GRAGRP D
Sbjct: 329 AGAVKVVYSTPTLAAGVNLPARRVVID--SYYRYEAGFREPIRVAEYKQMAGRAGRPGLD 386
Query: 878 SYGEGIIIT 886
+GE II+
Sbjct: 387 EFGEAIIVA 395
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 114/419 (27%), Positives = 186/419 (44%), Gaps = 81/419 (19%)
Query: 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPL 1399
+ F P Q +N++VAAPTGSGKT + AI+ + +A RA Y+ PL
Sbjct: 27 RLFEP-QYMALQAGVEKGENLVVAAPTGSGKTFIALVAIVNSLARAGG----RAFYLVPL 81
Query: 1400 EALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK-LLEKGQIIISTPEKWDALSRRWKQ 1458
+++A E+Y + I GL +++ + D + + ++I+T EK+D+L R
Sbjct: 82 KSVAYEKYTSFSILSRMGLKLKI------SVGDFREGPPEAPVVIATYEKFDSLLR--VS 133
Query: 1459 RKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDL 1517
+ VS+ I+DE+H + + GP+LE IVSRM +AS E + +V LS ++ NA ++
Sbjct: 134 PSLARNVSVLIVDEIHSVSDPKRGPILESIVSRM--LASAGEAQ--LVGLSATVPNAGEI 189
Query: 1518 GEWIGA-----------------TSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMT 1560
EWIG + L++ G+R VP + +D+
Sbjct: 190 AEWIGGKIVESSWRPVPLREYVFKEYKLYSPTGGLREVPRVYGLYDLDLA---------- 239
Query: 1561 KPTFTAIVQHAKNEKPALVFVPSRKYV-------------RLTAVDLMTYSSMDGDQKSA 1607
+ ++ ALVF SR+ RL++ + YS+
Sbjct: 240 -------AEAIEDGGQALVFTYSRRRAVTLAKRAAKRLGRRLSSREARVYSA-------- 284
Query: 1608 FLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSS 1667
A E ++ EE L + + G+ Y H GL + ++ V F AG +KV +
Sbjct: 285 ----EASRAEGAPRSVAEE-LASLIAAGIAYHHAGLPPSLRKTVEEAFRAGAVKVVYSTP 339
Query: 1668 SMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCH 1726
++ GV L A VV+ YY + V + QM G A RP LD G+ +I+
Sbjct: 340 TLAAGVNLPARRVVI--DSYYRYEAGFREPIRVAEYKQMAGRAGRPGLDEFGEAIIVAE 396
>sp|Q4JC00|HELS_SULAC Putative ski2-type helicase OS=Sulfolobus acidocaldarius (strain
ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB
11770) GN=Saci_0263 PE=3 SV=1
Length = 705
Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 128/417 (30%), Positives = 207/417 (49%), Gaps = 58/417 (13%)
Query: 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
+G+ +LN Q+ K L +L+ PT +GKT +A L ++ L LN+
Sbjct: 22 RGIKKLNPPQTEAVKKGLIEDKRLLITTPTASGKTLMAELGMISHL-LNKGG-------- 72
Query: 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDI 610
K +YV P++AL +E + + KV SGD + IIVTT EK D
Sbjct: 73 -KAIYVTPLRALTSEKYSTFKD-WEKLGFKVGVTSGDYDTDDPWLRNFDIIVTTYEKLDS 130
Query: 611 ITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
+ R S + + + + ++DE H ++D +RGPV+E + R RQ ++ LSAT
Sbjct: 131 LWRHSAE--WLKDIDYFVLDEFHYMNDGDRGPVVEGVAVRAKRQGT-------ILALSAT 181
Query: 670 LPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEK--- 726
+ N +DVA +L ++ ++RPVPL + + + KK L +D K
Sbjct: 182 IGNAKDVAKWLNADI------VATNWRPVPLKEGVMYSEGKK--GHIILYSDGTTNKLKG 233
Query: 727 ---VVA-----VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQ 778
++A ++ QV++F SRK TA I F+K D +++L+
Sbjct: 234 DDPIIAYTLDILSKGGQVIVFRSSRKYAETTAMKISQYM-------NFVKLDD--KKLLE 284
Query: 779 SHTDMVKSND--------LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATL 830
+ + + D L +L+ G A HHAG+++G R ++E F + ++V+ +T TL
Sbjct: 285 TAERIKEVEDAGSNEKEVLYNLIVRGVAFHHAGLSKGLRDIIEASFRERIIKVITATPTL 344
Query: 831 AWGVNLPAHTVIIKGTQIYNPEKGAWTEL-SPLDIMQMLGRAGRPQYDSYGEGIIIT 886
A GVNLPA V+I +N + +TE+ S ++ QM GRAGRP YD++GE II+
Sbjct: 345 AAGVNLPARAVVIGDIYRFNRKIVGFTEMISTMEYRQMSGRAGRPGYDNHGEAIILV 401
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 121/431 (28%), Positives = 203/431 (47%), Gaps = 47/431 (10%)
Query: 1315 ELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICS 1374
E + ++ LPV + + ++ +G K NP QT+ D +L+ PT SGKT+ +
Sbjct: 2 EEITVEDLPVDSKVKDIIKS--RGIKKLNPPQTEAVKKGLIEDKRLLITTPTASGKTLMA 59
Query: 1375 EFAILRNHQKASETGVMRAVYIAPLEALAKERY---RDWEIKFGQGLGMRVVELTGETAM 1431
E ++ + +A+Y+ PL AL E+Y +DWE LG +V +G+
Sbjct: 60 ELGMISHLLNKGG----KAIYVTPLRALTSEKYSTFKDWE-----KLGFKVGVTSGDYDT 110
Query: 1432 DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG-GQGGPVLEVIVSR 1490
D L II++T EK D+L R ++++ + F++DE H + G GPV+E + R
Sbjct: 111 DDPWLRNFDIIVTTYEKLDSLWRH--SAEWLKDIDYFVLDEFHYMNDGDRGPVVEGVAVR 168
Query: 1491 MRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHI------ 1544
+ + I+ALS ++ NAKD+ +W+ A RPVPL+ +
Sbjct: 169 AKRQGT-------ILALSATIGNAKDVAKWLNADI-----VATNWRPVPLKEGVMYSEGK 216
Query: 1545 QGVDITNFEARMQAMT--KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDL---MTYSS 1599
+G I + + P + +VF SRKY TA+ + M +
Sbjct: 217 KGHIILYSDGTTNKLKGDDPIIAYTLDILSKGGQVIVFRSSRKYAETTAMKISQYMNFVK 276
Query: 1600 MDGDQKSAFLLWPAEEVEPFID--NIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA 1657
+D D+K LL AE ++ D + ++E+L + GV + H GL+K ++++ A F
Sbjct: 277 LD-DKK---LLETAERIKEVEDAGSNEKEVLYNLIVRGVAFHHAGLSKGLRDIIEASFRE 332
Query: 1658 GKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVT-DLLQMMGHASRPLLD 1716
IKV + ++ GV L A VV+ ++ + T+ T + QM G A RP D
Sbjct: 333 RIIKVITATPTLAAGVNLPARAVVIGDIYRFNRKIVGFTEMISTMEYRQMSGRAGRPGYD 392
Query: 1717 NSGKCVILCHA 1727
N G+ +IL +
Sbjct: 393 NHGEAIILVRS 403
>sp|A8MB76|HELS_CALMQ Putative ski2-type helicase OS=Caldivirga maquilingensis (strain
ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)
GN=Cmaq_0318 PE=3 SV=1
Length = 756
Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 128/432 (29%), Positives = 219/432 (50%), Gaps = 38/432 (8%)
Query: 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
+G+ L Q ++ L + +NIL+ + T +GKT +A + + + +N +
Sbjct: 20 RGIRTLYPPQEEAIRAGLLNGENILMVSATASGKTLLAEVAAVNNVLVN----------D 69
Query: 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDI 610
K + P+KAL E + + N ++V +GD + + +I+TT EK D
Sbjct: 70 KKSLVAVPLKALAFEKLNDF-NTYSELGIRVAASTGDYNSEDKWLGSYDVIITTYEKLDS 128
Query: 611 ITRKSGDRTYTQLVKLLIIDEIHLLHDN-RGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
+ R + V LIIDEIH ++D+ RGP++ESIVA+ +R + + ++GLSAT
Sbjct: 129 LLRLKPSWIWN--VGQLIIDEIHFINDDERGPIIESIVAK-LRMLNLNPQ---IIGLSAT 182
Query: 670 LPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQ----QYIGIQVKKPLQRFQLMND-LCY 724
+ N E++A +L L K + +RPV L + + + V +R D L
Sbjct: 183 IGNPEELANWLNAKLVK------SDWRPVSLREGVYHKGVVTYVNDGEKRISGQGDSLIN 236
Query: 725 EKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFL---KEDSVSREILQSHT 781
V + QVL+F SR+ + AR + + + R++ + ++ E+ ++ +
Sbjct: 237 LTVDTLNDGGQVLVFSSSRQGAVRIARKLAEYICSSPV--RYIDPGEAGKLAEEVRETSS 294
Query: 782 DMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTV 841
+ + +L L+ G + HHAG+ R+++E+ F G ++VL ST TLA GVNLPA V
Sbjct: 295 SRILAEELTGLIKCGVSFHHAGLELEVRRVIEEGFRRGVLRVLASTTTLAAGVNLPARRV 354
Query: 842 IIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII-TGHSELRYYLSLMNQ 900
I+ + Y P G + E+ ++ QM GRAGRP D YGE III + E+ Y + +
Sbjct: 355 IVNEYRRYEPGYG-FIEIPVMEYKQMAGRAGRPGLDPYGEAIIIVSSKDEVDYVIDKYIK 413
Query: 901 QLP--IESQFVS 910
P ++S F++
Sbjct: 414 SPPEYVKSNFMN 425
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 131/490 (26%), Positives = 212/490 (43%), Gaps = 54/490 (11%)
Query: 1321 PLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILR 1380
PLP + LR+ L +G + P Q + +N+L+ + T SGKT+ +E A +
Sbjct: 7 PLP-SLLRDFLISK--RGIRTLYPPQEEAIRAGLLNGENILMVSATASGKTLLAEVAAVN 63
Query: 1381 N---HQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLE 1437
N + K S V PL+ALA E+ D+ LG+RV TG+ + K L
Sbjct: 64 NVLVNDKKSLVAV-------PLKALAFEKLNDFNTY--SELGIRVAASTGDYNSEDKWLG 114
Query: 1438 KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG-GQGGPVLEVIVSRMRYIAS 1496
+II+T EK D+L R + ++ V IIDE+H I + GP++E IV+++R +
Sbjct: 115 SYDVIITTYEKLDSLLRL--KPSWIWNVGQLIIDEIHFINDDERGPIIESIVAKLRMLNL 172
Query: 1497 QVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLE--IHIQGVD--ITNF 1552
+ I+ LS ++ N ++L W+ A RPV L ++ +GV + +
Sbjct: 173 NPQ----IIGLSATIGNPEELANWLNAKL-----VKSDWRPVSLREGVYHKGVVTYVNDG 223
Query: 1553 EARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDG----DQKSAF 1608
E R+ V + LVF SR+ A L Y D A
Sbjct: 224 EKRISGQGDSLINLTVDTLNDGGQVLVFSSSRQGAVRIARKLAEYICSSPVRYIDPGEAG 283
Query: 1609 LLWPAEEV-EPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSS 1667
L AEEV E I E L ++ GV + H GL + V+ F G ++V ++
Sbjct: 284 KL--AEEVRETSSSRILAEELTGLIKCGVSFHHAGLELEVRRVIEEGFRRGVLRVLASTT 341
Query: 1668 SMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHA 1727
++ GV L A V+V + Y+ + PV + QM G A RP LD G+ +I+ +
Sbjct: 342 TLAAGVNLPARRVIVNEYRRYE-PGYGFIEIPVMEYKQMAGRAGRPGLDPYGEAIIIVSS 400
Query: 1728 PRK-------------EYYKKFLRLTQNPNYYNLQGVSHRHLS--DHLSELVENTISDLE 1772
+ EY K + ++ L V+ ++ D L + NT + +
Sbjct: 401 KDEVDYVIDKYIKSPPEYVKSNFMNPTSLKFHTLSAVASQYAETIDELVKFTSNTFAGFQ 460
Query: 1773 ASKCIIIEED 1782
+I+ +
Sbjct: 461 GKLSAMIQAN 470
>sp|Q9HJX7|HELS_THEAC Putative ski2-type helicase OS=Thermoplasma acidophilum (strain
ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta0835 PE=3 SV=1
Length = 674
Score = 154 bits (390), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 122/385 (31%), Positives = 191/385 (49%), Gaps = 63/385 (16%)
Query: 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572
N+++ PT AGKT +A I + N K +Y+ P+++L E LS
Sbjct: 39 NVVVSVPTAAGKTLIAYSAIYETF-----------QRNLKSIYIVPLRSLAMEKFSELS- 86
Query: 573 RLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEI 632
RL+ +KV+ GD + I+ ++ T EK D + D V LL++DEI
Sbjct: 87 RLRDLGLKVKMSIGDYDDSPDFIKRYDAVILTSEKADSLLHH--DPYILNDVGLLVLDEI 144
Query: 633 HLLHD-NRGPVLESI--VARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLF 689
H + D +RGP LE++ +AR V +R++ LSAT+ N ++A +L +L K
Sbjct: 145 HTIGDESRGPTLETVASIARYV------NPDVRILALSATVSNAMELASWLDASLIK--- 195
Query: 690 YFDNSYRPVPLS-------QQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHS 742
+ +RPVPL Q Y+ + + + Q++ + V QVL+FV S
Sbjct: 196 ---SDFRPVPLKTGILYRDQLYLDGKRRSGVSINQIIRE-------TVEDNGQVLMFVSS 245
Query: 743 RKETAKTARAIRDTALENDTLGRFLKEDS---VSREILQSHTDMVKSNDLKDLLPYGFAI 799
RK+ TAR L + D+ +S + + DM L ++LP G A
Sbjct: 246 RKKAEDTAR----------DLAQIFGSDANIKISSDETNVYDDM-----LNEILPRGVAF 290
Query: 800 HHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTEL 859
HHAG++ R +E F ++V+V+T TLA GVNLPA VI++ + + ++ L
Sbjct: 291 HHAGLSNDQRAFIEREFRARRIKVIVATPTLAAGVNLPARLVIVRDITRWGSDGISY--L 348
Query: 860 SPLDIMQMLGRAGRPQYDSYGEGII 884
+ ++I QM+GRAGRP YD YG G+I
Sbjct: 349 TNMEIKQMIGRAGRPGYDQYGIGLI 373
Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 107/371 (28%), Positives = 177/371 (47%), Gaps = 34/371 (9%)
Query: 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418
NV+V+ PT +GKT+ + AI Q+ ++++YI PL +LA E++ E+ + L
Sbjct: 39 NVVVSVPTAAGKTLIAYSAIYETFQRN-----LKSIYIVPLRSLAMEKFS--ELSRLRDL 91
Query: 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYV-QQVSLFIIDELHLIG 1477
G++V G+ +++ +I T EK D+L Y+ V L ++DE+H IG
Sbjct: 92 GLKVKMSIGDYDDSPDFIKRYDAVILTSEKADSL---LHHDPYILNDVGLLVLDEIHTIG 148
Query: 1478 GQG-GPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVR 1536
+ GP LE + S RY V +RI+ALS +++NA +L W+ A+ R
Sbjct: 149 DESRGPTLETVASIARY----VNPDVRILALSATVSNAMELASWLDASL-----IKSDFR 199
Query: 1537 PVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMT 1596
PVPL+ I D + + ++ I + ++ L+FV SRK TA DL
Sbjct: 200 PVPLKTGILYRDQLYLDGKRRSGVSIN-QIIRETVEDNGQVLMFVSSRKKAEDTARDLAQ 258
Query: 1597 YSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFE 1656
D + K + ++E N+ ++ML L GV + H GL+ + + F
Sbjct: 259 IFGSDANIKIS-----SDET-----NVYDDMLNEILPRGVAFHHAGLSNDQRAFIEREFR 308
Query: 1657 AGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLD 1716
A +IKV V + ++ GV L A LV+V + ++ ++ QM+G A RP D
Sbjct: 309 ARRIKVIVATPTLAAGVNLPARLVIVRDITRWGSDGISYL--TNMEIKQMIGRAGRPGYD 366
Query: 1717 NSGKCVILCHA 1727
G +I +
Sbjct: 367 QYGIGLIYVSS 377
>sp|A7IB61|HELS_METB6 Putative ski2-type helicase OS=Methanoregula boonei (strain 6A8)
GN=Mboo_2458 PE=3 SV=1
Length = 723
Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 130/419 (31%), Positives = 203/419 (48%), Gaps = 67/419 (15%)
Query: 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNY 551
G+ +L Q+ + L N+L+ PT +GKT +A + + + +A +
Sbjct: 20 GIRELYPPQAACVERGLLDGKNLLVAIPTASGKTLIAEMAMHRHIA-----------NGG 68
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII 611
K +Y+ P+KAL +E N+ VKV +GD + + IIV T EK D +
Sbjct: 69 KCLYIVPLKALASEKYEEFGNK----GVKVGLSTGDLDRRDDALGKNDIIVATSEKVDSL 124
Query: 612 TRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670
R +G R + + L++IDEIHL+ +RGP LE ++A+ + + ++L+GLSAT+
Sbjct: 125 LR-NGAR-WIPDITLVVIDEIHLIDSPDRGPTLEMVIAK----MRSKNPGMQLIGLSATI 178
Query: 671 PNYEDVALFLR----------VNLEKGLFY-----FDNSYRPVPLSQQYIGIQVKKPLQR 715
N + +A +L V+L +G+FY F RPV QV K
Sbjct: 179 GNPKVLAGWLDAELVTSSWRPVDLRQGVFYDNRIQFAERMRPVK--------QVSKNYDD 230
Query: 716 FQLMNDLCYEKVVAVAGKHQVLIFVHSRKET-AKTARAIRDTALENDTLGRFLKEDSVSR 774
L D +A Q L+FV SR+ A RA E+ L R
Sbjct: 231 LNLCLD-------TIAEGGQCLVFVSSRRNAEAFAKRAAGAIKSEDAALA-----ACAER 278
Query: 775 EILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGV 834
+ + T+MVK+ L + G A HHAG++R +R +VE+ F ++ + ST TLA G+
Sbjct: 279 LLEGTPTEMVKT--LAACVAKGAAFHHAGLSRKERSIVEEAFRKNLLKCISSTPTLAAGL 336
Query: 835 NLPAHTVIIKGTQIYNPEKGAWTELSPLDI---MQMLGRAGRPQYDSYGEGIIITGHSE 890
NLPA VII+ ++ +G + P+ + QM GRAGRP+ D YGE ++I +E
Sbjct: 337 NLPARRVIIRDYLRFSAGEG----MQPIPVSEYRQMAGRAGRPRLDPYGEAVLIAKEAE 391
Score = 120 bits (302), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 115/412 (27%), Positives = 187/412 (45%), Gaps = 45/412 (10%)
Query: 1326 ALRNPLYEA-LYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQK 1384
A+ PL + L G + P Q N+LVA PT SGKT+ +E A+ H+
Sbjct: 7 AIPEPLRQQYLGLGIRELYPPQAACVERGLLDGKNLLVAIPTASGKTLIAEMAM---HRH 63
Query: 1385 ASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIIS 1444
+ G + +YI PL+ALA E+Y ++ K G++V TG+ L K II++
Sbjct: 64 IANGG--KCLYIVPLKALASEKYEEFGNK-----GVKVGLSTGDLDRRDDALGKNDIIVA 116
Query: 1445 TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIASQVENKIR 1503
T EK D+L R +++ ++L +IDE+HLI GP LE+++++MR ++
Sbjct: 117 TSEKVDSLLRNGA--RWIPDITLVVIDEIHLIDSPDRGPTLEMVIAKMR----SKNPGMQ 170
Query: 1504 IVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITN---FEARMQAMT 1560
++ LS ++ N K L W+ A RPV L QGV N F RM+ +
Sbjct: 171 LIGLSATIGNPKVLAGWLDAEL-----VTSSWRPVDLR---QGVFYDNRIQFAERMRPVK 222
Query: 1561 KPT-----FTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEE 1615
+ + + LVFV SR+ A ++ + A L AE
Sbjct: 223 QVSKNYDDLNLCLDTIAEGGQCLVFVSSRR----NAEAFAKRAAGAIKSEDAALAACAER 278
Query: 1616 VEPFIDNIQEEMLK---ATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWG 1672
++ EM+K A + G + H GL++ ++ +V F +K + ++ G
Sbjct: 279 ---LLEGTPTEMVKTLAACVAKGAAFHHAGLSRKERSIVEEAFRKNLLKCISSTPTLAAG 335
Query: 1673 VPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVIL 1724
+ L A V++ + E PV++ QM G A RP LD G+ V++
Sbjct: 336 LNLPARRVIIRDYLRFSAGEGMQP-IPVSEYRQMAGRAGRPRLDPYGEAVLI 386
>sp|O73946|HELS_PYRFU Putative ski2-type helicase OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF0677 PE=1 SV=1
Length = 720
Score = 150 bits (380), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 153/540 (28%), Positives = 253/540 (46%), Gaps = 68/540 (12%)
Query: 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
+G+ Q+ KS + N L+ PT +GKT +A + ++ ++
Sbjct: 19 RGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGG--------- 69
Query: 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDI 610
K VY+ P+KAL E + + ++V +GD + + + II+ T EK+D
Sbjct: 70 -KAVYIVPLKALAEEKFQEFQD-WEKIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDS 127
Query: 611 ITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
+ R ++ + VK+L+ DEIHL+ +RG LE I+A + + + ++GLSAT
Sbjct: 128 LLRHGS--SWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQ-------IIGLSAT 178
Query: 670 LPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ--YIGIQVKK--PLQRFQLMNDLCYE 725
+ N E++A +L L + +RPV L + Y G + + RF +L Y+
Sbjct: 179 IGNPEELAEWLNAEL------IVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYD 232
Query: 726 KVVAVAGKHQVLIFVHSRKETAKTARAI--RDTALENDTLGRFLKEDSVSREILQSHTDM 783
A+ K LIFV+ R++ + A + + +L R L E + S E ++ +
Sbjct: 233 ---AIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKL 289
Query: 784 VKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVII 843
K+ + G A HHAG+ R +R LVE+ F G ++ +V+T TL+ G+N PA VII
Sbjct: 290 AKA------IRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVII 343
Query: 844 KGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR----YYLSLMN 899
+ I+ + +++ QMLGRAGRP+YD GEGII++ + R +Y+
Sbjct: 344 R--DIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKP 401
Query: 900 QQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYT-YLYIR--------MLRNPAL 950
++L + S L Q+ A I +E +I T Y Y R +RN
Sbjct: 402 EKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEKIRNILY 461
Query: 951 YGLAPEVLK---ED----ITLGERRADLV---HTAATILDR-NNLVKYDRKSGYFQVTDL 999
+ L E ++ ED ++LG R A L +TA D+ +VK G F + L
Sbjct: 462 FLLENEFIEISLEDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISL 521
Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 123/415 (29%), Positives = 200/415 (48%), Gaps = 63/415 (15%)
Query: 1337 QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYI 1396
+G + F P Q + N L++ PT SGKT+ +E A++ H+ ++ G +AVYI
Sbjct: 19 RGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMV--HRILTQGG--KAVYI 74
Query: 1397 APLEALAKER---YRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALS 1453
PL+ALA+E+ ++DWE +G+RV TG+ + L K III+T EK+D+L
Sbjct: 75 VPLKALAEEKFQEFQDWE-----KIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLL 129
Query: 1454 RRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512
R +++ V + + DE+HLIG + G LEVI++ M K +I+ LS ++
Sbjct: 130 RH--GSSWIKDVKILVADEIHLIGSRDRGATLEVILAHML-------GKAQIIGLSATIG 180
Query: 1513 NAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEA-------RMQAMTKPTFT 1565
N ++L EW+ A RPV L +GV F R + + +
Sbjct: 181 NPEELAEWLNAEL-----IVSDWRPVKLR---RGVFYQGFVTWEDGSIDRFSSWEELVYD 232
Query: 1566 AIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAE--EVEPFIDNI 1623
AI + +K AL+FV R+ A++L +K LL E + D++
Sbjct: 233 AI----RKKKGALIFVNMRRKAERVALEL--------SKKVKSLLTKPEIRALNELADSL 280
Query: 1624 QE----EMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHL 1679
+E E L +R GV + H GL + ++ +V F G IK V + ++ G+ A
Sbjct: 281 EENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFR 340
Query: 1680 VVVMGTQYYD--GQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHA--PRK 1730
V++ Y G E P+ ++ QM+G A RP D G+ +I+ + PR+
Sbjct: 341 VIIRDIWRYSDFGMERI----PIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPRE 391
>sp|O75417|DPOLQ_HUMAN DNA polymerase theta OS=Homo sapiens GN=POLQ PE=1 SV=2
Length = 2590
Score = 144 bits (363), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 134/483 (27%), Positives = 225/483 (46%), Gaps = 80/483 (16%)
Query: 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572
N++ APT AGKT VA L IL+++ R K +++ P ++ E L +
Sbjct: 110 NLVYSAPTSAGKTLVAELLILKRVLEMRK----------KALFILPFVSVAKEKKYYLQS 159
Query: 573 RLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEI 632
Q +KV G + +R I V T E+ + + + + L+ ++++DE+
Sbjct: 160 LFQEVGIKVDGYMGSTSPSRH-FSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDEL 218
Query: 633 HLLHDN-RGPVLESIVARTV---RQIETTK--------EHIRLVGLSATLPNYEDVALFL 680
H+L D+ RG +LE ++ + R+ + + +++VG+SATLPN E VA +L
Sbjct: 219 HMLGDSHRGYLLELLLTKICYITRKSASCQADLASSLSNAVQIVGMSATLPNLELVASWL 278
Query: 681 RVNLEKGLFYFDNSYRPVPLSQQY-IGIQV----KKPLQRFQLM----------NDLCYE 725
L + +RPVPL + +G + K ++ F+ M LCYE
Sbjct: 279 NAEL------YHTDFRPVPLLESVKVGNSIYDSSMKLVREFEPMLQVKGDEDHVVSLCYE 332
Query: 726 KVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVK 785
+ H VL+F S+K K A I L + S ++ ++++
Sbjct: 333 ---TICDNHSVLLFCPSKKWCEKLADIIAREFYNLHHQAEGLVKPSECPPVILEQKELLE 389
Query: 786 SND------------LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWG 833
D L+ +P+G A HHAG+T +R ++E F G ++VL +T+TL+ G
Sbjct: 390 VMDQLRRLPSGLDSVLQKTVPWGVAFHHAGLTFEERDIIEGAFRQGLIRVLAATSTLSSG 449
Query: 834 VNLPAHTVIIKGTQIYNPEKGAWTELSPLDIM---QMLGRAGRPQYDSYGEGIIITGHSE 890
VNLPA VII+ T I+ PLDI+ QM+GRAGR D+ GE I+I +SE
Sbjct: 450 VNLPARRVIIR-TPIFGGR--------PLDILTYKQMVGRAGRKGVDTVGESILICKNSE 500
Query: 891 LRYYLSLMNQQL-PIESQFVSKLADQLNA-------EIVLGTV-QNAKEACNWIGYTYLY 941
++L+ L P+ S + +++ EI++G V +++ + T+L
Sbjct: 501 KSKGIALLQGSLKPVRSCLQRREGEEVTGSMIRAILEIIVGGVASTSQDMHTYAACTFLA 560
Query: 942 IRM 944
M
Sbjct: 561 ASM 563
Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 105/437 (24%), Positives = 207/437 (47%), Gaps = 72/437 (16%)
Query: 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418
N++ +APT +GKT+ +E IL+ + + +A++I P ++AKE+ + F Q +
Sbjct: 110 NLVYSAPTSAGKTLVAELLILKRVLEMRK----KALFILPFVSVAKEKKYYLQSLF-QEV 164
Query: 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG- 1477
G++V G T+ + I + T E+ + L R + + + + ++DELH++G
Sbjct: 165 GIKVDGYMGSTSPS-RHFSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDELHMLGD 223
Query: 1478 GQGGPVLEVIVSRMRYI-----------ASQVENKIRIVALSTSLANAKDLGEWIGATSH 1526
G +LE++++++ YI AS + N ++IV +S +L N + + W+ A
Sbjct: 224 SHRGYLLELLLTKICYITRKSASCQADLASSLSNAVQIVGMSATLPNLELVASWLNAEL- 282
Query: 1527 GLFNFPPGVRPVPLEIHIQGVDITN--FEARMQAMTKPTFTAIVQHAKNE---------- 1574
+ RPVPL ++ V + N +++ M+ + + F ++Q +E
Sbjct: 283 ----YHTDFRPVPL---LESVKVGNSIYDSSMKLVRE--FEPMLQVKGDEDHVVSLCYET 333
Query: 1575 ----KPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAE---------EVEPFID 1621
L+F PS+K+ A D++ + ++ L+ P+E E+ +D
Sbjct: 334 ICDNHSVLLFCPSKKWCEKLA-DIIAREFYNLHHQAEGLVKPSECPPVILEQKELLEVMD 392
Query: 1622 NIQ------EEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPL 1675
++ + +L+ T+ GV + H GL +++++ F G I+V +S++ GV L
Sbjct: 393 QLRRLPSGLDSVLQKTVPWGVAFHHAGLTFEERDIIEGAFRQGLIRVLAATSTLSSGVNL 452
Query: 1676 TAHLVVVMGTQYYDGQENAHTDYPVTDLL---QMMGHASRPLLDNSGKCVILCHAPRKEY 1732
A V++ T + G+ P+ D+L QM+G A R +D G+ +++C K
Sbjct: 453 PARRVIIR-TPIFGGR-------PL-DILTYKQMVGRAGRKGVDTVGESILICKNSEKSK 503
Query: 1733 YKKFLRLTQNPNYYNLQ 1749
L+ + P LQ
Sbjct: 504 GIALLQGSLKPVRSCLQ 520
>sp|O26901|HELS_METTH Putative ski2-type helicase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_810 PE=3 SV=1
Length = 690
Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 135/490 (27%), Positives = 232/490 (47%), Gaps = 70/490 (14%)
Query: 481 EMPEWAQPAFKGMTQLNRVQ-SRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALN 539
EM + + + +LN Q S + L S DN ++ PT +GKT + ++ L+ +
Sbjct: 7 EMRQILGDCYPHIRELNPAQRSAIEAGYLESEDNYIIAIPTASGKTLLGIIAALKTVM-- 64
Query: 540 RNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQ 599
+G +++Y P+ ++ E + +L+ + ++V G T +
Sbjct: 65 ---EGG------RVIYTVPLLSIQNEKIKEF-RKLEEHGIRV----GKDPRT------SD 104
Query: 600 IIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTK 658
I V E +D +TR S + + V LLI+DE H++ + RGPV+ES + R T
Sbjct: 105 IAVMVFESFDSLTRFSWN--ILREVDLLIVDEFHMIGEYTRGPVIESAITRA----RTLN 158
Query: 659 EHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQL 718
+R+V LSATL N +++A +L + ++ YRPVPL ++ + ++ ++
Sbjct: 159 PSVRIVALSATLSNMDEIAGWLDARV------VEHDYRPVPLHREVLDTEMFGVREK--- 209
Query: 719 MNDLCYEKVV--AVAGKHQVLIFVHSRKETAKTARAIRDT---ALENDTLGRFLKEDSVS 773
ND+ KV+ ++ Q L FV +R+ T A + D + +D + F +
Sbjct: 210 -NDVVL-KVLERSLEDGSQTLAFVSTRRFTESLASHLADKISGKIPDDMVESFREVAGKV 267
Query: 774 REILQSHTDMVKSNDLK--DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLA 831
E+ +S S LK + L G A HHAG+ R+++ED F DG++ ++ +T +L
Sbjct: 268 LEVPKSRGSPPTSTCLKLAECLEAGIAFHHAGLFNRQREIIEDEFRDGNILMITATPSLM 327
Query: 832 WGVNLPAHTVIIKGTQIYNPEKGAWTELSP-----LDIMQMLGRAGRPQYDSYGEGIIIT 886
+GVNLP+ TV+I+ + WT P D QM GRAGRPQYD G +I
Sbjct: 328 YGVNLPSRTVVIR-------DYTRWTSQGPRRIPVFDYEQMSGRAGRPQYDDAGYSYLIA 380
Query: 887 -GHSEL----RYYLSLMNQQLP---IESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYT 938
H E YY+ ++ IE++ L Q+ A++ G +E ++ T
Sbjct: 381 RSHDEAMDLEEYYIRGEVERTTSRIIENR--DALYRQIIAQVASGLSGTTEELADFFRNT 438
Query: 939 YLYIRMLRNP 948
+ +M+ P
Sbjct: 439 FYGYQMVEGP 448
Score = 107 bits (268), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 107/406 (26%), Positives = 171/406 (42%), Gaps = 53/406 (13%)
Query: 1336 YQGFKHFNPIQTQVFTVLY-NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAV 1394
Y + NP Q Y ++DN ++A PT SGKT+ A L+ + R +
Sbjct: 16 YPHIRELNPAQRSAIEAGYLESEDNYIIAIPTASGKTLLGIIAALKTVMEGG-----RVI 70
Query: 1395 YIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSR 1454
Y PL ++ E+ + E + + G+RV K I + E +D+L+R
Sbjct: 71 YTVPLLSIQNEKIK--EFRKLEEHGIRVG----------KDPRTSDIAVMVFESFDSLTR 118
Query: 1455 -RWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512
W +++V L I+DE H+IG GPV+E ++R R + V RIVALS +L+
Sbjct: 119 FSWN---ILREVDLLIVDEFHMIGEYTRGPVIESAITRARTLNPSV----RIVALSATLS 171
Query: 1513 NAKDLGEWIGA--TSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQH 1570
N ++ W+ A H RPVPL H + +D F R + + +
Sbjct: 172 NMDEIAGWLDARVVEHDY-------RPVPL--HREVLDTEMFGVREK--NDVVLKVLERS 220
Query: 1571 AKNEKPALVFVPSRKYVRLTAVDLMTYSS--MDGDQKSAF-------LLWPAEEVEPFID 1621
++ L FV +R++ A L S + D +F L P P
Sbjct: 221 LEDGSQTLAFVSTRRFTESLASHLADKISGKIPDDMVESFREVAGKVLEVPKSRGSPPTS 280
Query: 1622 NIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVV 1681
+ L L G+ + H GL +E++ F G I + + S+ +GV L + VV
Sbjct: 281 TCLK--LAECLEAGIAFHHAGLFNRQREIIEDEFRDGNILMITATPSLMYGVNLPSRTVV 338
Query: 1682 VMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHA 1727
+ + Q PV D QM G A RP D++G ++ +
Sbjct: 339 IRDYTRWTSQ--GPRRIPVFDYEQMSGRAGRPQYDDAGYSYLIARS 382
>sp|Q465R3|HELS_METBF Putative ski2-type helicase OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=Mbar_A3508 PE=3 SV=1
Length = 729
Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 117/404 (28%), Positives = 200/404 (49%), Gaps = 40/404 (9%)
Query: 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNY 551
G+ +L Q+ + L N+L PT +GKT +A L +L+ + +
Sbjct: 20 GIMELYPPQAEAVEKGLLEGRNLLAAIPTASGKTLLAELAMLKSIL-----------AGG 68
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII 611
K +Y+ P++AL +E ++ ++V +GD L + + IIV T EK D +
Sbjct: 69 KALYIVPLRALASEKFRRFREFSEL-GIRVGISTGDYDLRDEGLGVNDIIVATSEKTDSL 127
Query: 612 TRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670
R + + Q + +++ DE+HL+ +RGP LE +A+ +R++ + +++ LSAT+
Sbjct: 128 LRN--ETVWMQEISVVVADEVHLIDSPDRGPTLEVTLAK-LRKMNPS---CQILALSATV 181
Query: 671 PNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAV 730
N +++A++L L + +RP L + R + + ++ V +
Sbjct: 182 GNADELAVWLEAEL------VVSEWRPTELLEGVFFNGTFYCKDREKTVEQSTKDEAVNL 235
Query: 731 A-----GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQ-SHTDMV 784
A Q L+F SRK A+ T + + ++ EIL+ S TD
Sbjct: 236 ALDTLKKDGQCLVFESSRKNCMAFAKKAASTVKKTLSAEDRNALAGIADEILENSETDT- 294
Query: 785 KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIK 844
S +L + G A HHAG+T R+LVED F G ++++ ST TLA G+NLPA VII+
Sbjct: 295 -STNLAVCIRSGTAFHHAGLTTPLRELVEDGFRAGRIKLISSTPTLAAGLNLPARRVIIR 353
Query: 845 GTQIYNPEKGAWTELSPLDIM---QMLGRAGRPQYDSYGEGIII 885
+ Y+ E G + P+ ++ QM GRAGRP+ D YGE +++
Sbjct: 354 NYRRYSSEDG----MQPIPVLEYKQMAGRAGRPRLDPYGEAVLV 393
Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 139/523 (26%), Positives = 235/523 (44%), Gaps = 74/523 (14%)
Query: 1335 LYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAV 1394
L G P Q + N+L A PT SGKT+ +E A+L++ +A+
Sbjct: 17 LNSGIMELYPPQAEAVEKGLLEGRNLLAAIPTASGKTLLAELAMLKSILAGG-----KAL 71
Query: 1395 YIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSR 1454
YI PL ALA E++R + +F + LG+RV TG+ + + L II++T EK D+L R
Sbjct: 72 YIVPLRALASEKFRRFR-EFSE-LGIRVGISTGDYDLRDEGLGVNDIIVATSEKTDSLLR 129
Query: 1455 RWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513
+ ++Q++S+ + DE+HLI GP LEV ++++R ++ +I+ALS ++ N
Sbjct: 130 --NETVWMQEISVVVADEVHLIDSPDRGPTLEVTLAKLR----KMNPSCQILALSATVGN 183
Query: 1514 AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITN---FEARMQAMTKPTFTAIVQH 1570
A +L W+ A RP L ++GV + R + + + T V
Sbjct: 184 ADELAVWLEAEL-----VVSEWRPTEL---LEGVFFNGTFYCKDREKTVEQSTKDEAVNL 235
Query: 1571 A----KNEKPALVFVPSRKYVRLTAVDLMTY--SSMDGDQKSAFLLWPAEEVEPFIDNIQ 1624
A K + LVF SRK A + ++ + ++A L A+E+ +
Sbjct: 236 ALDTLKKDGQCLVFESSRKNCMAFAKKAASTVKKTLSAEDRNA-LAGIADEILENSETDT 294
Query: 1625 EEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMG 1684
L +R G + H GL +E+V F AG+IK+ + ++ G+ L A V++
Sbjct: 295 STNLAVCIRSGTAFHHAGLTTPLRELVEDGFRAGRIKLISSTPTLAAGLNLPARRVIIRN 354
Query: 1685 TQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLRLTQNPN 1744
+ Y E+ PV + QM G A RP LD G+ V++ + YK+F+ L +N
Sbjct: 355 YRRYS-SEDGMQPIPVLEYKQMAGRAGRPRLDPYGEAVLVAKS-----YKEFVFLFENYI 408
Query: 1745 YYNLQGV-----SHRHLSDHLSELVENTISD--------LEAS----------------K 1775
N + + + L H+ + N + LEA+ +
Sbjct: 409 EANAEDIWSKLGTENALRTHVLSTISNGFARTYDELMDFLEATFFAFQYSNFGLSTVVNE 468
Query: 1776 CI-------IIEEDMDLSPSNHGMIASYYYISYTTIERFSSSL 1811
C+ ++E+D L P++ G + S YI + R + L
Sbjct: 469 CLNFLRQEGMLEKDDALIPTSFGKLVSRLYIDPLSAARIAKGL 511
>sp|Q0W6L1|HELS_UNCMA Putative ski2-type helicase OS=Uncultured methanogenic archaeon RC-I
GN=UNCMA_22030 PE=3 SV=1
Length = 740
Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 149/595 (25%), Positives = 264/595 (44%), Gaps = 103/595 (17%)
Query: 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNY 551
G+ +L Q+ + L N+L PT +GKT +A + +L+ +A
Sbjct: 20 GIPELYPPQAEAIRQGLLDGKNLLAAIPTASGKTLLAEMAMLKSIA-----------EGG 68
Query: 552 KIVYVAPMKALVAEVVGNL--SNRLQMY--DVKVRELSGDQTLTRQQIEETQIIVTTPEK 607
K +Y+ P+KAL +E ++L + VKV +GD + + E IIV T EK
Sbjct: 69 KAIYIVPLKALASEKYDRFLEFSKLPIKPDGVKVGIATGDFDSRDEYLGEKDIIVATSEK 128
Query: 608 WDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGL 666
D + R ++ + +++ DE+HL+ NRGP LE +A+ +R+I +++++ L
Sbjct: 129 TDSLLRNGA--SWLSGLSVVVADEVHLIDSPNRGPTLEVTLAK-LRKINV---NLQILAL 182
Query: 667 SATLPNYEDVALFLR----------VNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRF 716
SAT+ N + +A ++ L++G+FY R + ++ + P +
Sbjct: 183 SATIGNAKALAKWMDAALVQSEWRPTTLKEGVFY----GRAITFKKEKRTVNNAGPDEVN 238
Query: 717 QLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDT------ALENDTLGRFLKED 770
L+ D E Q L+F ++RK + A+ + + E + L + LK+D
Sbjct: 239 SLVADTLEEG-------GQCLVFANTRKSSESIAQKVARSLSKKLQPAEKEQLAK-LKQD 290
Query: 771 SVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATL 830
+ H + L + + G A HHAG+ R++VED F ++V+ T TL
Sbjct: 291 VLR------HAETDTCEKLAECVGNGVAFHHAGLKGEHRRIVEDGFRQNILKVIACTPTL 344
Query: 831 AWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890
A G+NLPA VII+ + ++ G+ + L+ QM GRAGRP+ D YGE ++I + +
Sbjct: 345 AAGLNLPARRVIIRDYKRFDVNYGS-VPIPVLEYKQMAGRAGRPRLDPYGEAVLIAKNYD 403
Query: 891 LRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPAL 950
+F + + +NA+ T + E +R AL
Sbjct: 404 ----------------EFGELMENYINADPEHITSKLGTEPA------------MRAHAL 435
Query: 951 YGLAPEVLKE--------DIT-LGERRADLVHTAATILD---RNNLVKYDRKSGYFQVTD 998
+A + + D T +R DL H +L+ N++ + K G + TD
Sbjct: 436 SAVATDFCRSRQDLKAFMDTTFFAYQRGDLSHVIDNVLNFLLEENMI-IESKGGSLKATD 494
Query: 999 LGRIASYYYISHGTISTYNEHL-----KPTMGDIELCRLFSLSEEFKYVTVRQDE 1048
LG + S YI + + E L +P + + L L + + K + +R+ +
Sbjct: 495 LGSLVSKLYIDPLSAALIAEGLEKAKKRPDVAEFGLLHLICSTPDVKSLYLRRGD 549
Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 118/424 (27%), Positives = 189/424 (44%), Gaps = 49/424 (11%)
Query: 1337 QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYI 1396
G P Q + N+L A PT SGKT+ +E A+L++ +E G +A+YI
Sbjct: 19 SGIPELYPPQAEAIRQGLLDGKNLLAAIPTASGKTLLAEMAMLKS---IAEGG--KAIYI 73
Query: 1397 APLEALAKERYRDWEIKFG----QGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDAL 1452
PL+ALA E+Y D ++F + G++V TG+ + L + II++T EK D+L
Sbjct: 74 VPLKALASEKY-DRFLEFSKLPIKPDGVKVGIATGDFDSRDEYLGEKDIIVATSEKTDSL 132
Query: 1453 SRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIASQVENKIRIVALSTSL 1511
R ++ +S+ + DE+HLI GP LEV ++++R ++ ++I+ALS ++
Sbjct: 133 LRNGAS--WLSGLSVVVADEVHLIDSPNRGPTLEVTLAKLR----KINVNLQILALSATI 186
Query: 1512 ANAKDLGEWIGATSHGLFNFPPGVRPVPL-EIHIQGVDIT-NFEARMQAMTKP--TFTAI 1567
NAK L +W+ A RP L E G IT E R P + +
Sbjct: 187 GNAKALAKWMDAAL-----VQSEWRPTTLKEGVFYGRAITFKKEKRTVNNAGPDEVNSLV 241
Query: 1568 VQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAE---------EVEP 1618
+ LVF +RK A + S L PAE +V
Sbjct: 242 ADTLEEGGQCLVFANTRKSSESIAQKVARSLSKK--------LQPAEKEQLAKLKQDVLR 293
Query: 1619 FIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAH 1678
+ E L + +GV + H GL + +V F +KV + ++ G+ L A
Sbjct: 294 HAETDTCEKLAECVGNGVAFHHAGLKGEHRRIVEDGFRQNILKVIACTPTLAAGLNLPAR 353
Query: 1679 LVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLR 1738
V++ + +D + PV + QM G A RP LD G+ V++ + Y +F
Sbjct: 354 RVIIRDYKRFDVNYGS-VPIPVLEYKQMAGRAGRPRLDPYGEAVLIA-----KNYDEFGE 407
Query: 1739 LTQN 1742
L +N
Sbjct: 408 LMEN 411
>sp|Q8PZR7|HELS_METMA Putative ski2-type helicase OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=MM_0425 PE=3 SV=1
Length = 730
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 127/423 (30%), Positives = 207/423 (48%), Gaps = 58/423 (13%)
Query: 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNY 551
G+ +L Q+ + L N+L PT +GKT +A L +L+ + LN
Sbjct: 20 GILELYPPQAEAVEKGLLEGKNLLAAIPTASGKTLLAELAMLKSV-LNGG---------- 68
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDV---KVRELSGDQTLTRQQIEETQIIVTTPEKW 608
K +Y+ P++AL +E R Q + V +V +GD + + IIV T EK
Sbjct: 69 KALYIVPLRALASEKF----RRFQEFSVLGMRVGISTGDYDRRDEGLGINDIIVATSEKT 124
Query: 609 DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLS 667
D + R + + Q + +++ DE+HL+ +RGP LE T+ ++ +++ LS
Sbjct: 125 DSLLRN--ETAWMQEISVVVADEVHLIDSPDRGPTLEI----TLSKLRRMNPSCQVLALS 178
Query: 668 ATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ--YIGIQVKKPLQR--FQLMNDLC 723
AT+ N +++A +L L + +RP L + Y GI K ++ Q D
Sbjct: 179 ATVGNADELAAWLDAEL------VLSEWRPTDLMEGVFYNGIFYCKDKEKPVGQPTKDEA 232
Query: 724 YEKVV-AVAGKHQVLIFVHSRKET----AKTARAIRDTALEND--TLGRFLKEDSVSREI 776
V+ + Q L+F SRK K A++ T D TL ++ EI
Sbjct: 233 VNLVLDTIKEGGQCLVFESSRKNCMGFAKKAVSAVKKTLSNEDRETLA------GIADEI 286
Query: 777 LQ-SHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVN 835
++ S TD+ S+ L + G A HHAG+T R+LVE+ F +G ++++ ST TLA G+N
Sbjct: 287 IENSETDV--SSVLATCVRSGTAFHHAGLTTPLRELVENGFREGRIKIISSTPTLAAGLN 344
Query: 836 LPAHTVIIKGTQIYNPEKGAWTELSPLDIM---QMLGRAGRPQYDSYGEGIIITGHSELR 892
LPA VII+ + Y+ + G + P+ ++ QM GRAGRP+ D YGE +++ E
Sbjct: 345 LPARRVIIRSYRRYSSDSG----MQPIPVLEYKQMAGRAGRPRLDPYGEAVLLAKSYEEF 400
Query: 893 YYL 895
+L
Sbjct: 401 VFL 403
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 112/389 (28%), Positives = 191/389 (49%), Gaps = 34/389 (8%)
Query: 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418
N+L A PT SGKT+ +E A+L++ +A+YI PL ALA E++R ++ +F L
Sbjct: 41 NLLAAIPTASGKTLLAELAMLKSVLNGG-----KALYIVPLRALASEKFRRFQ-EFSV-L 93
Query: 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478
GMRV TG+ + L II++T EK D+L R + ++Q++S+ + DE+HLI
Sbjct: 94 GMRVGISTGDYDRRDEGLGINDIIVATSEKTDSLLR--NETAWMQEISVVVADEVHLIDS 151
Query: 1479 -QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRP 1537
GP LE+ +S++R ++ +++ALS ++ NA +L W+ A RP
Sbjct: 152 PDRGPTLEITLSKLR----RMNPSCQVLALSATVGNADELAAWLDAEL-----VLSEWRP 202
Query: 1538 VPLEIHIQGVDITNFEARMQAMTKPT----FTAIVQHAKNEKPALVFVPSRKYV---RLT 1590
L + I + + + + +PT ++ K LVF SRK
Sbjct: 203 TDLMEGVFYNGIFYCKDKEKPVGQPTKDEAVNLVLDTIKEGGQCLVFESSRKNCMGFAKK 262
Query: 1591 AVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEV 1650
AV + + + D+++ L A+E+ + +L +R G + H GL +E+
Sbjct: 263 AVSAVKKTLSNEDRET--LAGIADEIIENSETDVSSVLATCVRSGTAFHHAGLTTPLREL 320
Query: 1651 VSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHA 1710
V F G+IK+ + ++ G+ L A V++ + Y ++ PV + QM G A
Sbjct: 321 VENGFREGRIKIISSTPTLAAGLNLPARRVIIRSYRRYS-SDSGMQPIPVLEYKQMAGRA 379
Query: 1711 SRPLLDNSGKCVILCHAPRKEYYKKFLRL 1739
RP LD G+ V+L + Y++F+ L
Sbjct: 380 GRPRLDPYGEAVLLAKS-----YEEFVFL 403
>sp|Q8TL39|HELS_METAC Putative ski2-type helicase OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=MA_3203 PE=3
SV=1
Length = 730
Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 121/416 (29%), Positives = 206/416 (49%), Gaps = 44/416 (10%)
Query: 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNY 551
G+ +L Q+ + L N+L PT +GKT +A L +L+ + +
Sbjct: 20 GIPELYPPQAEAVEKGLLEGKNLLAAIPTASGKTLLAELAMLKSVL-----------AGG 68
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII 611
K +Y+ P++AL +E + ++ ++V +GD + + IIV T EK D +
Sbjct: 69 KALYIVPLRALASEKFRRFQDFSEL-GIRVGISTGDYDRRDEGLGINDIIVATSEKTDSL 127
Query: 612 TRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670
R + + Q + ++++DE+HL+ +RGP LE +A+ + +++ LSAT+
Sbjct: 128 LRN--ETAWMQEISVVVVDEVHLIDSADRGPTLEVTLAK----LRKMNPFCQILALSATV 181
Query: 671 PNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ--YIGIQVKKPLQRF--QLMNDLCYEK 726
N +++A +L L + +RP L + + G K ++ Q D
Sbjct: 182 GNADELAAWLDAEL------VLSEWRPTDLMEGVFFDGTFFCKDKEKLIEQPTKDEAINL 235
Query: 727 VV-AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKED--SVSREILQ-SHTD 782
V+ + Q L+F SRK A+ + T+ TL KE ++ EIL+ S TD
Sbjct: 236 VLDTLREGGQCLVFESSRKNCMGFAK--KATSAVKKTLSAEDKEKLAGIADEILENSETD 293
Query: 783 MVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVI 842
++ L + G A HHAG+T R+LVE F +G+V+++ ST TLA G+NLPA VI
Sbjct: 294 T--ASVLASCVRAGTAFHHAGLTSPLRELVETGFREGYVKLISSTPTLAAGLNLPARRVI 351
Query: 843 IKGTQIYNPEKGAWTELSPLDIM---QMLGRAGRPQYDSYGEGIIITGHSELRYYL 895
I+ + Y+ + G + P+ ++ QM GRAGRP+ D YGE +++ E +L
Sbjct: 352 IRSYRRYSSDSG----MQPIPVLEYKQMAGRAGRPRLDPYGEAVLLAKSYEELLFL 403
Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 111/382 (29%), Positives = 191/382 (50%), Gaps = 39/382 (10%)
Query: 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418
N+L A PT SGKT+ +E A+L++ +A+YI PL ALA E++R ++ F + L
Sbjct: 41 NLLAAIPTASGKTLLAELAMLKSVLAGG-----KALYIVPLRALASEKFRRFQ-DFSE-L 93
Query: 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI-G 1477
G+RV TG+ + L II++T EK D+L R + ++Q++S+ ++DE+HLI
Sbjct: 94 GIRVGISTGDYDRRDEGLGINDIIVATSEKTDSLLR--NETAWMQEISVVVVDEVHLIDS 151
Query: 1478 GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRP 1537
GP LEV ++++R ++ +I+ALS ++ NA +L W+ A RP
Sbjct: 152 ADRGPTLEVTLAKLR----KMNPFCQILALSATVGNADELAAWLDAEL-----VLSEWRP 202
Query: 1538 VPLEIHIQGV--DITNF-EARMQAMTKPT----FTAIVQHAKNEKPALVFVPSRKYV--- 1587
L ++GV D T F + + + + +PT ++ + LVF SRK
Sbjct: 203 TDL---MEGVFFDGTFFCKDKEKLIEQPTKDEAINLVLDTLREGGQCLVFESSRKNCMGF 259
Query: 1588 --RLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNK 1645
+ T+ T S+ D ++ + A+E+ + +L + +R G + H GL
Sbjct: 260 AKKATSAVKKTLSAEDKEKLAGI----ADEILENSETDTASVLASCVRAGTAFHHAGLTS 315
Query: 1646 TDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQ 1705
+E+V F G +K+ + ++ G+ L A V++ + Y ++ PV + Q
Sbjct: 316 PLRELVETGFREGYVKLISSTPTLAAGLNLPARRVIIRSYRRYS-SDSGMQPIPVLEYKQ 374
Query: 1706 MMGHASRPLLDNSGKCVILCHA 1727
M G A RP LD G+ V+L +
Sbjct: 375 MAGRAGRPRLDPYGEAVLLAKS 396
>sp|Q12WZ6|HELS_METBU Putative ski2-type helicase OS=Methanococcoides burtonii (strain
DSM 6242) GN=Mbur_1102 PE=3 SV=1
Length = 760
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 126/468 (26%), Positives = 221/468 (47%), Gaps = 53/468 (11%)
Query: 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNY 551
G+ +L Q+ + L N+L PT +GKT +A L +++ +
Sbjct: 20 GIKELYPPQAEAIEMGLLEKKNLLAAIPTASGKTLLAELAMIKAI-----------REGG 68
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII 611
K +Y+ P++AL +E L + +KV +GD + IIV T EK D +
Sbjct: 69 KALYIVPLRALASEKFERF-KELAPFGIKVGISTGDLDSRADWLGVNDIIVATSEKTDSL 127
Query: 612 TRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670
R ++ + +++DEIHLL NRGP LE + + +R +++V LSAT+
Sbjct: 128 LRNG--TSWMDEITTVVVDEIHLLDSKNRGPTLEVTITKLMR----LNPDVQVVALSATV 181
Query: 671 PNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI-GIQVKKPLQRFQL----MNDLCYE 725
N ++A +L G + +RP L + + G + P + ++ +D
Sbjct: 182 GNAREMADWL------GAALVLSEWRPTDLHEGVLFGDAINFPGSQKKIDRLEKDDAVNL 235
Query: 726 KVVAVAGKHQVLIFVHSRKETA---KTARAIRDTALENDTLGRFLKEDSVSREILQSHTD 782
+ + + Q L+F SR+ A KTA + L+ND + +K ++ E+ +S +
Sbjct: 236 VLDTIKAEGQCLVFESSRRNCAGFAKTASSKVAKILDNDIM---IKLAGIAEEV-ESTGE 291
Query: 783 MVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVI 842
+ L + + G A HHAG+ R+LVE+ F ++V+ ST TLA G+NLPA VI
Sbjct: 292 TDTAIVLANCIRKGVAFHHAGLNSNHRKLVENGFRQNLIKVISSTPTLAAGLNLPARRVI 351
Query: 843 IKGTQIYNPEKGAWTELSPLDIM---QMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMN 899
I+ + ++ G + P+ ++ QM GRAGRP D YGE +++ + + LM
Sbjct: 352 IRSYRRFDSNFG----MQPIPVLEYKQMAGRAGRPHLDPYGESVLLAKTYD--EFAQLME 405
Query: 900 QQLPIESQFV-SKLADQ------LNAEIVLGTVQNAKEACNWIGYTYL 940
+ +++ + SKL + + + IV G +E ++ G T+
Sbjct: 406 NYVEADAEDIWSKLGTENALRTHVLSTIVNGFASTRQELFDFFGATFF 453
Score = 134 bits (337), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 118/416 (28%), Positives = 190/416 (45%), Gaps = 38/416 (9%)
Query: 1337 QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYI 1396
G K P Q + + N+L A PT SGKT+ +E A+++ ++ +A+YI
Sbjct: 19 SGIKELYPPQAEAIEMGLLEKKNLLAAIPTASGKTLLAELAMIKAIREGG-----KALYI 73
Query: 1397 APLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRW 1456
PL ALA E++ K G++V TG+ L II++T EK D+L R
Sbjct: 74 VPLRALASEKFE--RFKELAPFGIKVGISTGDLDSRADWLGVNDIIVATSEKTDSLLR-- 129
Query: 1457 KQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIASQVENKIRIVALSTSLANAK 1515
++ +++ ++DE+HL+ + GP LEV ++++ + V+ +VALS ++ NA+
Sbjct: 130 NGTSWMDEITTVVVDEIHLLDSKNRGPTLEVTITKLMRLNPDVQ----VVALSATVGNAR 185
Query: 1516 DLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTK----PTFTAIVQHA 1571
++ +W+GA RP L + D NF + + + ++
Sbjct: 186 EMADWLGAAL-----VLSEWRPTDLHEGVLFGDAINFPGSQKKIDRLEKDDAVNLVLDTI 240
Query: 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSS-----MDGDQKSAFLLWPAEEVEPFIDNIQEE 1626
K E LVF SR R A T SS +D D L AEEVE +
Sbjct: 241 KAEGQCLVFESSR---RNCAGFAKTASSKVAKILDNDIMIK-LAGIAEEVESTGETDTAI 296
Query: 1627 MLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQ 1686
+L +R GV + H GLN +++V F IKV + ++ G+ L A V++ +
Sbjct: 297 VLANCIRKGVAFHHAGLNSNHRKLVENGFRQNLIKVISSTPTLAAGLNLPARRVIIRSYR 356
Query: 1687 YYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLRLTQN 1742
+D PV + QM G A RP LD G+ V+L Y +F +L +N
Sbjct: 357 RFDSNFGMQP-IPVLEYKQMAGRAGRPHLDPYGESVLLAKT-----YDEFAQLMEN 406
>sp|Q8TDG4|HELQ_HUMAN Helicase POLQ-like OS=Homo sapiens GN=HELQ PE=1 SV=2
Length = 1101
Score = 135 bits (339), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 149/567 (26%), Positives = 256/567 (45%), Gaps = 89/567 (15%)
Query: 479 ISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLAL 538
I ++ EW LN VQ R N++ PT GKT VA + +LQ+L
Sbjct: 333 IEKLYEWQHTCL----TLNSVQER---------KNLIYSLPTSGGKTLVAEILMLQELLC 379
Query: 539 NRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL--TRQQIE 596
R D ++ + P A+V E + LS+ V E +G + ++ E
Sbjct: 380 CRKD----------VLMILPYVAIVQEKISGLSSFGIELGFFVEEYAGSKGRFPPTKRRE 429
Query: 597 ETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIE 655
+ + + T EK + + + L+++DE+H++ + +RG LE +A+ + +
Sbjct: 430 KKSLYIATIEKGHSLVNSLIETGRIDSLGLVVVDELHMIGEGSRGATLEMTLAKILYTSK 489
Query: 656 TTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGI-------- 707
TT+ ++G+SATL N ED+ FL+ Y+ + +RPV L ++Y+ I
Sbjct: 490 TTQ----IIGMSATLNNVEDLQKFLQAE------YYTSQFRPVEL-KEYLKINDTIYEVD 538
Query: 708 -QVKKPLQRFQLMN------------DLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIR 754
+ + + +L+N D V V + L+F S+K A I
Sbjct: 539 SKAENGMTFSRLLNYKYSDTLKKMDPDHLVALVTEVIPNYSCLVFCPSKKNCENVAEMIC 598
Query: 755 DTALENDTLGRFLKEDSVSREILQSHTDMVKSN---DLKDLLPYGFAIHHAGMTRGDRQL 811
L + L KE E++++ ++ N LK +P+G A HH+G+T +R+L
Sbjct: 599 K-FLSKEYLKHKEKEKC---EVIKNLKNIGNGNLCPVLKRTIPFGVAYHHSGLTSDERKL 654
Query: 812 VEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRA 871
+E+ + G + + T+TLA GVNLPA VI++ + A L QM+GRA
Sbjct: 655 LEEAYSTGVLCLFTCTSTLAAGVNLPARRVILRAPYV------AKEFLKRNQYKQMIGRA 708
Query: 872 GRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEI--VLGTVQNAK 929
GR D+ GE I+I + + L L+ + P+E+ + S L + I + ++ K
Sbjct: 709 GRAGIDTIGESILILQEKDKQQVLELITK--PLENCY-SHLVQEFTKGIQTLFLSLIGLK 765
Query: 930 EACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVH--TAATILDRNNLVKY 987
A N I N +G+ +VL ++ +L E + + T +L ++ + K
Sbjct: 766 IATNLDD-----IYHFMNGTFFGVQQKVLLKEKSLWEITVESLRYLTEKGLLQKDTIYKS 820
Query: 988 DRKSGY-FQVTDLGRIASYYYISHGTI 1013
+ + Y F +T LGR AS+ GTI
Sbjct: 821 EEEVQYNFHITKLGR-ASF----KGTI 842
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 96/403 (23%), Positives = 173/403 (42%), Gaps = 57/403 (14%)
Query: 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418
N++ + PT GKT+ +E +L+ + +M I P A+ +E+ FG L
Sbjct: 354 NLIYSLPTSGGKTLVAEILMLQELLCCRKDVLM----ILPYVAIVQEKISGLS-SFGIEL 408
Query: 1419 GMRVVELTGETAM--DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 1476
G V E G K EK + I+T EK +L + + + L ++DELH+I
Sbjct: 409 GFFVEEYAGSKGRFPPTKRREKKSLYIATIEKGHSLVNSLIETGRIDSLGLVVVDELHMI 468
Query: 1477 G-GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGV 1535
G G G LE+ ++++ Y + + I+ +S +L N +DL +++ A +
Sbjct: 469 GEGSRGATLEMTLAKILYTSKTTQ----IIGMSATLNNVEDLQKFLQAEY-----YTSQF 519
Query: 1536 RPVPLEIHIQGVDITNFEARMQAMTKPTFT--------------------AIVQHAKNEK 1575
RPV L+ +++ ++ T +E +A TF+ A+V
Sbjct: 520 RPVELKEYLK-INDTIYEVDSKAENGMTFSRLLNYKYSDTLKKMDPDHLVALVTEVIPNY 578
Query: 1576 PALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQE-------EML 1628
LVF PS+K A + + S + +L +E I N++ +L
Sbjct: 579 SCLVFCPSKKNCENVAEMICKFLSKE------YLKHKEKEKCEVIKNLKNIGNGNLCPVL 632
Query: 1629 KATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYY 1688
K T+ GV Y H GL +++++ + G + + +S++ GV L A V++ Y
Sbjct: 633 KRTIPFGVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVILRAP-YV 691
Query: 1689 DGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE 1731
+ Y QM+G A R +D G+ +++ K+
Sbjct: 692 AKEFLKRNQYK-----QMIGRAGRAGIDTIGESILILQEKDKQ 729
>sp|Q2VPA6|HELQ_MOUSE Helicase POLQ-like OS=Mus musculus GN=Helq PE=2 SV=2
Length = 1069
Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 133/529 (25%), Positives = 250/529 (47%), Gaps = 84/529 (15%)
Query: 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572
N++ PT GKT VA + +LQ+L + D ++ + P A+V E + +LS+
Sbjct: 313 NLIYSLPTSGGKTLVAEILMLQELLCRQKD----------VLMILPYVAIVQEKISSLSS 362
Query: 573 RLQMYDVKVRELSGDQ----TLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLI 628
V E +G + + R+ E+ + + T EK + + + + L++
Sbjct: 363 FGIELGFFVEEYAGSKGRFPPIKRR--EKKSLYIATIEKAHSLVNALIETSRLSTLGLVV 420
Query: 629 IDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKG 687
+DE+H++ + +RG +LE +A+ + +TT+ ++G+SATL N ED+ FL+
Sbjct: 421 VDELHMIGEGSRGAILEMTLAKVLYTSKTTQ----IIGMSATLNNVEDLQAFLKAE---- 472
Query: 688 LFYFDNSYRPVPL--------------SQQYIGIQVKKPL-----QRFQLMN-DLCYEKV 727
Y+ + +RPV L SQ G+ + L + + M+ D V
Sbjct: 473 --YYTSQFRPVELKEFLKVNDTIYEVDSQAADGMTFSRLLSYKYSEALKKMDPDRLVALV 530
Query: 728 VAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSR------EILQSHT 781
V + L+F S+K A + L +FL +D ++ E+++S
Sbjct: 531 TEVIPNYSCLVFCPSKKNCENVA----------EMLCKFLSKDYLNHREKEKCEVIKSLR 580
Query: 782 DMVKSND---LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPA 838
++ LK +P+G A HH+G+T +R+L+E+ + G + +L T+TLA GVNLPA
Sbjct: 581 NIGNGKVCPVLKRTVPFGIAYHHSGLTSEERKLLEEAYSTGVLCLLTCTSTLAAGVNLPA 640
Query: 839 HTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLM 898
VI++ + N T L QM+GRAGR D+ GE I++ + + L L+
Sbjct: 641 RRVILRAPYVAN------TFLKRNQYKQMVGRAGRAGIDTAGESILLLQEKDKQQVLELI 694
Query: 899 NQQLPIESQFVSKLADQLNAEI--VLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPE 956
+ P+E+ S L ++ I + ++ K A + +G Y ++ + +G+ +
Sbjct: 695 SG--PLET-CCSHLVEEFTKGIQALFLSLIGLKIAAS-LGDIYQFM----SGTFFGVQQK 746
Query: 957 VLKEDITLGERRADLVH--TAATILDRNNLVKYDRKSGYFQVTDLGRIA 1003
+L ++ +L E D + T +L +++ + +F++T LG+ +
Sbjct: 747 ILLKEKSLWEITVDALEHLTEKGLLQKDSCGDNEGLECHFRITKLGQAS 795
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 101/415 (24%), Positives = 180/415 (43%), Gaps = 60/415 (14%)
Query: 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418
N++ + PT GKT+ +E +L+ + +M I P A+ +E+ FG L
Sbjct: 313 NLIYSLPTSGGKTLVAEILMLQELLCRQKDVLM----ILPYVAIVQEKISSLS-SFGIEL 367
Query: 1419 GMRVVELTGETAM--DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 1476
G V E G +K EK + I+T EK +L + + + L ++DELH+I
Sbjct: 368 GFFVEEYAGSKGRFPPIKRREKKSLYIATIEKAHSLVNALIETSRLSTLGLVVVDELHMI 427
Query: 1477 G-GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGV 1535
G G G +LE+ ++++ Y + + I+ +S +L N +DL ++ A +
Sbjct: 428 GEGSRGAILEMTLAKVLYTSKTTQ----IIGMSATLNNVEDLQAFLKAE-----YYTSQF 478
Query: 1536 RPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEK-------------------- 1575
RPV L+ ++ V+ T +E QA TF+ ++ + +E
Sbjct: 479 RPVELKEFLK-VNDTIYEVDSQAADGMTFSRLLSYKYSEALKKMDPDRLVALVTEVIPNY 537
Query: 1576 PALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQE-------EML 1628
LVF PS+K A L + S D +L +E I +++ +L
Sbjct: 538 SCLVFCPSKKNCENVAEMLCKFLSKD------YLNHREKEKCEVIKSLRNIGNGKVCPVL 591
Query: 1629 KATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYY 1688
K T+ G+ Y H GL +++++ + G + + +S++ GV L A V++
Sbjct: 592 KRTVPFGIAYHHSGLTSEERKLLEEAYSTGVLCLLTCTSTLAAGVNLPARRVILRAPYV- 650
Query: 1689 DGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLRLTQNP 1743
A+T QM+G A R +D +G+ ++L K+ + L L P
Sbjct: 651 -----ANTFLKRNQYKQMVGRAGRAGIDTAGESILLLQEKDKQ---QVLELISGP 697
>sp|Q5JGV6|HELS_PYRKO Putative ski2-type helicase OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=TK1332 PE=3 SV=1
Length = 1125
Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 103/339 (30%), Positives = 171/339 (50%), Gaps = 30/339 (8%)
Query: 1337 QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYI 1396
+G + P Q + N+++A PT SGKT+ SE ++ ++ SE G +AVY+
Sbjct: 19 RGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVSEIVMV--NKLLSEGG--KAVYL 74
Query: 1397 APLEALAKERYRD---WEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALS 1453
PL+ALA+E+YR+ WE+ LG+RV TG+ + L + II++T EK+D+L
Sbjct: 75 VPLKALAEEKYREFKEWEV-----LGLRVAATTGDYDSTDEWLGRYDIIVATAEKFDSLL 129
Query: 1454 RRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512
R +++ V L + DE+HLIG G LE+I++ M K +I+ALS ++
Sbjct: 130 RHGAS--WIKDVKLVVADEVHLIGSYDRGATLEMILTHML-------GKAQILALSATVG 180
Query: 1513 NAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFE-ARMQAMTKPTFTAIVQHA 1571
NA++L EW+ A+ RPV L + + +E ++ + + ++
Sbjct: 181 NAEELAEWLDASL-----VVSDWRPVELRKGVFHLGQLFWEDGKIDHYPENWESLVLDAV 235
Query: 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKAT 1631
K K ALVFV +R+ A+ L + S + L E + DN E LK
Sbjct: 236 KKGKQALVFVNTRRSAEKEAISLSSKVSKLLTKPETRRL--EELISSIEDNPTTEKLKRA 293
Query: 1632 LRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMC 1670
L+ GV + H GL++ ++ ++ F G IKV + ++C
Sbjct: 294 LKGGVAFHHAGLSRAERTLIEDAFRNGLIKVITATPTLC 332
Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 98/351 (27%), Positives = 171/351 (48%), Gaps = 47/351 (13%)
Query: 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
+G+ +L Q+ KS + N++L PT +GKT V+ + ++ +L +G
Sbjct: 19 RGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVSEIVMVNKLL----SEGG----- 69
Query: 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDI 610
K VY+ P+KAL E ++ ++V +GD T + + IIV T EK+D
Sbjct: 70 -KAVYLVPLKALAEEKYREFKE-WEVLGLRVAATTGDYDSTDEWLGRYDIIVATAEKFDS 127
Query: 611 ITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
+ R ++ + VKL++ DE+HL+ +RG LE I+ + + + ++ LSAT
Sbjct: 128 LLRHGA--SWIKDVKLVVADEVHLIGSYDRGATLEMILTHMLGKAQ-------ILALSAT 178
Query: 670 LPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDL-----CY 724
+ N E++A +L +L + +RPV L + + Q F + +
Sbjct: 179 VGNAEELAEWLDASL------VVSDWRPVELRKGVFHLG-----QLFWEDGKIDHYPENW 227
Query: 725 EKVV--AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSR--EILQSH 780
E +V AV Q L+FV++R+ K A ++ + + + L + R E++ S
Sbjct: 228 ESLVLDAVKKGKQALVFVNTRRSAEKEAISL------SSKVSKLLTKPETRRLEELISSI 281
Query: 781 TDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLA 831
D + LK L G A HHAG++R +R L+ED F +G ++V+ +T TL
Sbjct: 282 EDNPTTEKLKRALKGGVAFHHAGLSRAERTLIEDAFRNGLIKVITATPTLC 332
Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Query: 833 GVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT 886
G+NLPA VII+ T+ Y WT++ L+I QM+GRAGRP+YD GE II+
Sbjct: 737 GINLPAFRVIIRDTKRY--ANFGWTDIPVLEIQQMMGRAGRPKYDKVGEAIIVA 788
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 80/206 (38%), Gaps = 38/206 (18%)
Query: 1672 GVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHA--PR 1729
G+ L A V++ T+ Y TD PV ++ QMMG A RP D G+ +I+ P+
Sbjct: 737 GINLPAFRVIIRDTKRY--ANFGWTDIPVLEIQQMMGRAGRPKYDKVGEAIIVARTEDPK 794
Query: 1730 K--EYY-----KKFLRLTQNPNYYNLQ--------GVS-HRHLSDHLSELV----ENTIS 1769
K + Y +K + N + Q GV R L D LS S
Sbjct: 795 KLIDRYIHGKPEKLFSMLANEQAFRSQVLALITNFGVEDFRELVDFLSRTFYAHQRGDTS 854
Query: 1770 DLEASKCIII-----EEDMDLSPSNH------GMIASYYYISYTTIERFSSSLTPKTRMK 1818
LE I+ E +D+ N G S YI T ++F + R
Sbjct: 855 SLEYKAKDIVYFLIENEFIDMDVENRFIALPFGRRTSQLYIDPLTAKKFKDAFPAIERNP 914
Query: 1819 ---GLLEVLASASEYAQLPIRPGEEE 1841
G+ ++LAS + A L R E E
Sbjct: 915 NPFGIFQLLASTPDMATLTARRREME 940
>sp|Q914M3|Y007_SIFVH Putative helicase 7 OS=Sulfolobus islandicus filamentous virus
(isolate Iceland/Hveragerdi) GN=SIFV0007 PE=4 SV=1
Length = 601
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 106/413 (25%), Positives = 181/413 (43%), Gaps = 90/413 (21%)
Query: 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIV 554
QLN Q + +S L S N+L+ APTG GK+ +A+L ++ + ++V
Sbjct: 7 QLNEFQKKALQSFLMSDKNLLITAPTGTGKSFLAMLMAME--------------TKSRVV 52
Query: 555 YVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIE------ETQIIVTTPEKW 608
Y P++AL ++ + N++ V + LT + E E ++I TT EK
Sbjct: 53 YTVPLRALALQLNDDFHNKVAPL---VNGYADSVALTSEVYEEDPENLEERVIFTTYEKA 109
Query: 609 DIITRKSGDRTYTQLVKLLIIDEIHLLHDN-RGPVLESIVARTVRQIETTKEHIRLVGLS 667
D I R+ +T ++ LIIDEIH + D RG +E+++A + E IR+V +S
Sbjct: 110 DAIFRRH--YPWTDRIETLIIDEIHNIGDKERGKAIENLIAYAMN------EGIRIVAMS 161
Query: 668 ATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL-----QRFQLMNDL 722
AT+P+ +A + + K RP+PL Y +++ L +L D
Sbjct: 162 ATIPDVNKIAEIIDAEIIK------TDERPIPL---YKAVKIGNKLYFEDGDVIELKEDF 212
Query: 723 CYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTD 782
+ V K++V++ S ++ A+ I D +N
Sbjct: 213 IKKMV----RKNKVVMIFTSTRKKAEELYMIYDRKFQNKV-------------------- 248
Query: 783 MVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVI 842
A HAG+ + + + G ++VST L+ GVN P + V+
Sbjct: 249 ---------------AFFHAGLDAETKLRLLEETRQGKYNIIVSTTALSQGVNFPFYAVV 293
Query: 843 IKGTQIYNPEKG---AWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR 892
++ E G W +++P++ Q+ GRAGRP YD EG+ I +++R
Sbjct: 294 FDDLKLPIIEYGRFTGWKQITPIEFDQICGRAGRPGYDE--EGLCIIEATDIR 344
Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 116/442 (26%), Positives = 175/442 (39%), Gaps = 83/442 (18%)
Query: 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLE 1400
N Q + +D N+L+ APTG+GK+ A+L + S R VY PL
Sbjct: 7 QLNEFQKKALQSFLMSDKNLLITAPTGTGKSF---LAMLMAMETKS-----RVVYTVPLR 58
Query: 1401 ALAKERYRDWEIKFGQGLGMRV--VELTGET-AMDLKLLEKGQIIISTPEKWDALSRR-- 1455
ALA + D+ K + V LT E D + LE+ ++I +T EK DA+ RR
Sbjct: 59 ALALQLNDDFHNKVAPLVNGYADSVALTSEVYEEDPENLEE-RVIFTTYEKADAIFRRHY 117
Query: 1456 -WKQRKYVQQVSLFIIDELHLIG-GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513
W R + IIDE+H IG + G +E + IA + IRIVA+S ++ +
Sbjct: 118 PWTDR-----IETLIIDEIHNIGDKERGKAIENL------IAYAMNEGIRIVAMSATIPD 166
Query: 1514 AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKN 1573
+ E I A RP+PL ++ + FE K F I + +
Sbjct: 167 VNKIAEIIDAEII-----KTDERPIPLYKAVKIGNKLYFEDGDVIELKEDF--IKKMVRK 219
Query: 1574 EKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLR 1633
K ++F +RK AEE+ D +
Sbjct: 220 NKVVMIFTSTRK--------------------------KAEELYMIYDR--------KFQ 245
Query: 1634 HGVGYLHEGLNKTDQEVVSALFE---AGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDG 1690
+ V + H GL D E L E GK + V ++++ GV + VV +
Sbjct: 246 NKVAFFHAGL---DAETKLRLLEETRQGKYNIIVSTTALSQGVNFPFYAVVFDDLKLPII 302
Query: 1691 QENAHTDY----PVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLRLTQNPNYY 1746
+ T + P+ + Q+ G A RP D G C+I R+ +K R N +Y
Sbjct: 303 EYGRFTGWKQITPI-EFDQICGRAGRPGYDEEGLCIIEATDIRQA--EKLKRTYFNTSYG 359
Query: 1747 NLQGVSHRHLSDHLSELVENTI 1768
+ G H L D L L+ I
Sbjct: 360 TITG--HHVLEDFLLALISKYI 379
>sp|Q58524|HELS_METJA Putative ski2-type helicase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1124 PE=3 SV=1
Length = 1195
Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 95/364 (26%), Positives = 174/364 (47%), Gaps = 53/364 (14%)
Query: 492 GMTQLNRVQSRVYKSALSSAD-NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
G+ +L Q + + L + N L+ PT +GKT + + ++ L DG+ N +N
Sbjct: 12 GIVELRPPQKKALERGLLDKNKNFLISIPTASGKTLIGEMALINHLL-----DGNKNPTN 66
Query: 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDI 610
K +++ P+KAL +E ++ + Y +++ GD + + + +I+TT EK D
Sbjct: 67 KKGIFIVPLKALASEKYEEFKSKYERYGLRIALSIGDYD-EDEDLSKYHLIITTAEKLDS 125
Query: 611 ITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
+ R D + V ++++DEIHL++D RG LE ++ + + +++++GLSAT
Sbjct: 126 LWRHKID--WINDVSVVVVDEIHLINDETRGGTLEILLTKL------KEFNVQIIGLSAT 177
Query: 670 LPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQ--------LMND 721
+ N +++A +L L + +RPV L + GI + ++ + N+
Sbjct: 178 IGNPDELAEWLNAEL------IVDDWRPVELKK---GIYKNEAIEFINGEIREIKAVDNN 228
Query: 722 LCYEKVV-AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSR------ 774
Y VV V L+F ++++ A+ + L +FL E+ R
Sbjct: 229 DIYNLVVDCVKEGGCCLVFCNTKRNAVNEAKKL--------NLKKFLTEEEKIRLKEIAE 280
Query: 775 ---EILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLA 831
IL+ T+M K+ L + + G A HHAG+T R++VED F ++V+ T TL
Sbjct: 281 EILSILEPPTEMCKT--LAECILNGSAFHHAGLTYQHRKIVEDAFRKRLIKVICCTPTLC 338
Query: 832 WGVN 835
N
Sbjct: 339 LNAN 342
Score = 105 bits (261), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 93/362 (25%), Positives = 175/362 (48%), Gaps = 41/362 (11%)
Query: 1319 LQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAI 1378
L+ + LR P +AL +G L + + N L++ PT SGKT+ E A+
Sbjct: 8 LKDFGIVELRPPQKKALERG--------------LLDKNKNFLISIPTASGKTLIGEMAL 53
Query: 1379 LRNHQKASETGV-MRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLE 1437
+ + ++ + ++I PL+ALA E+Y +++ K+ + G+R+ G+ D + L
Sbjct: 54 INHLLDGNKNPTNKKGIFIVPLKALASEKYEEFKSKY-ERYGLRIALSIGDYDED-EDLS 111
Query: 1438 KGQIIISTPEKWDALSRRWKQR-KYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIA 1495
K +II+T EK D+L W+ + ++ VS+ ++DE+HLI + G LE+++++++
Sbjct: 112 KYHLIITTAEKLDSL---WRHKIDWINDVSVVVVDEIHLINDETRGGTLEILLTKLK--- 165
Query: 1496 SQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHI---QGVDITNF 1552
E ++I+ LS ++ N +L EW+ A RPV L+ I + ++ N
Sbjct: 166 ---EFNVQIIGLSATIGNPDELAEWLNAEL-----IVDDWRPVELKKGIYKNEAIEFING 217
Query: 1553 EAR-MQAM-TKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLL 1610
E R ++A+ + +V K LVF +++ A L + ++K L
Sbjct: 218 EIREIKAVDNNDIYNLVVDCVKEGGCCLVFCNTKRNAVNEAKKLNLKKFLTEEEKIR-LK 276
Query: 1611 WPAEEVEPFIDNIQE--EMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSS 1668
AEE+ ++ E + L + +G + H GL +++V F IKV + +
Sbjct: 277 EIAEEILSILEPPTEMCKTLAECILNGSAFHHAGLTYQHRKIVEDAFRKRLIKVICCTPT 336
Query: 1669 MC 1670
+C
Sbjct: 337 LC 338
Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 833 GVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE-- 890
G+NLP I+K + + + + ++I Q +GRAGRP D YGEGII+ +
Sbjct: 841 GLNLPCRRAIVKDLTRFTNKGMRYIPI--MEIQQCIGRAGRPGLDPYGEGIIVAKNDRDY 898
Query: 891 LRYYLSLMNQQLPIESQFVSK--LADQLNAEIVLGTVQN 927
LR Y +L + PI S+ ++ L QL I G +++
Sbjct: 899 LRAYQALTQKPEPIYSKLSNQAVLRTQLLGLIATGEIRD 937
>sp|Q10701|HELY_MYCTU Probable helicase HelY OS=Mycobacterium tuberculosis GN=helY PE=3
SV=1
Length = 906
Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 139/541 (25%), Positives = 221/541 (40%), Gaps = 108/541 (19%)
Query: 506 SALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE 565
SAL +L+CAPTGAGKT V + LA + K Y P+KAL +
Sbjct: 27 SALERGHGVLVCAPTGAGKTVVGEFAVHLALA-----------AGSKCFYTTPLKALSNQ 75
Query: 566 VVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS--GDRTYTQL 623
+L+ R + + L+GD ++ ++V T E + R D Q
Sbjct: 76 KHTDLTARYGRDQIGL--LTGDLSVN----GNAPVVVMTTE----VLRNMLYADSPALQG 125
Query: 624 VKLLIIDEIHLLHDN-RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV 682
+ +++DE+H L D RGPV E ++ + + +R+V LSAT+ N E+ +++
Sbjct: 126 LSYVVMDEVHFLADRMRGPVWEEVILQL-------PDDVRVVSLSATVSNAEEFGGWIQT 178
Query: 683 NLEKGLFYFDNSYRPVPLSQQY-------------IGIQVKKPLQRFQLMNDLCYEK--- 726
D +RPVPL Q IG +P +L+ + + +
Sbjct: 179 VRGDTTVVVDE-HRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNRELLRHIAHRREAD 237
Query: 727 -------------------------VVA---VAGKHQVLIFVHSRKET-AKTARAIRDTA 757
V+A G + FV SR A + +R
Sbjct: 238 RMADWQPRRRGSGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSPL 297
Query: 758 LENDTLGRFLKEDSVSR--EILQSHTDMVKSNDLKDLLPY--------GFAIHHAGMTRG 807
R E+ +R E++ + +DL L Y G A HHAGM
Sbjct: 298 -------RLTSEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPA 350
Query: 808 DRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQM 867
R VE+LF G V+ + +T TLA G+N+PA TV+++ +N E+ L+P + Q+
Sbjct: 351 FRHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQ--HMPLTPGEYTQL 408
Query: 868 LGRAGRPQYDSYGEGIII----TGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLG 923
GRAGR D G ++I SE+ S + P+ S F A N I L
Sbjct: 409 TGRAGRRGIDVEGHAVVIWHPEIEPSEVAGLAS--TRTFPLRSSF----APSYNMTINLV 462
Query: 924 TVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNN 983
++A + ++ + R+ + GL + + + LGE A+L + A IL+
Sbjct: 463 HRMGPQQAHRLLEQSFAQYQADRS--VVGLVRGIERGNRILGEIAAELGGSDAPILEYAR 520
Query: 984 L 984
L
Sbjct: 521 L 521
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 110/480 (22%), Positives = 197/480 (41%), Gaps = 85/480 (17%)
Query: 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG- 1417
VLV APTG+GKT+ EFA+ S + Y PL+AL+ +++ D ++G+
Sbjct: 34 GVLVCAPTGAGKTVVGEFAVHLALAAGS-----KCFYTTPLKALSNQKHTDLTARYGRDQ 88
Query: 1418 LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477
+G+ LTG DL + +++ T E + + +Q +S ++DE+H +
Sbjct: 89 IGL----LTG----DLSVNGNAPVVVMTTEVLRNML--YADSPALQGLSYVVMDEVHFLA 138
Query: 1478 GQ-GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVR 1536
+ GPV E ++ Q+ + +R+V+LS +++NA++ G WI R
Sbjct: 139 DRMRGPVWEEVI-------LQLPDDVRVVSLSATVSNAEEFGGWIQTVRGDTTVVVDEHR 191
Query: 1537 PVPLEIHI----QGVDITNF---EARMQAMTKPTFTAIVQHAK--------------NEK 1575
PVPL H+ + D+ ++ EA Q + H + + +
Sbjct: 192 PVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNRELLRHIAHRREADRMADWQPRRRGSGR 251
Query: 1576 PALVFVPSRKYV--RLTAVDLM-----TYSSMDGDQ------KSAFLLWPAEE---VEPF 1619
P P R V +L A L+ +S D +S L EE +
Sbjct: 252 PGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSPLRLTSEEERARIAEV 311
Query: 1620 IDNIQEEMLKATLR------------HGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSS 1667
ID+ ++ + L G+ H G+ + V LF AG +K +
Sbjct: 312 IDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEELFTAGLVKAVFATE 371
Query: 1668 SMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHA 1727
++ G+ + A VV+ ++G++ H + Q+ G A R +D G V++ H
Sbjct: 372 TLALGINMPARTVVLERLVKFNGEQ--HMPLTPGEYTQLTGRAGRRGIDVEGHAVVIWH- 428
Query: 1728 PRKE--------YYKKF-LRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCII 1778
P E + F LR + P+Y + HR L+E + + +A + ++
Sbjct: 429 PEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRLLEQSFAQYQADRSVV 488
>sp|O13799|YE02_SCHPO Uncharacterized helicase C17H9.02 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC17H9.02 PE=1 SV=1
Length = 1030
Score = 104 bits (260), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 119/469 (25%), Positives = 205/469 (43%), Gaps = 88/469 (18%)
Query: 461 HVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPT 520
++P KH P DP PA +L+ QS K + +++L+ A T
Sbjct: 106 YIPLNKHIPSDP---------------PAKTYPFELDPFQSTAIK-CVERMESVLVSAHT 149
Query: 521 GAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVK 580
AGKT +A I Q L NR +++Y +P+K+L + L + + DV
Sbjct: 150 SAGKTVIAEYAIAQALK-NRQ----------RVIYTSPIKSLSNQKYRELLS--EFGDVG 196
Query: 581 VRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NR 639
+ ++GD ++ ++ T E + K+ + + + +I DE+H + D +R
Sbjct: 197 L--MTGDVSIN----PSASCLIMTTEILRAMLYKNSEIMHE--IAWVIFDEVHYMRDKDR 248
Query: 640 GPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVP 699
G V E + + IR + LSATLPN A ++ ++ YRP P
Sbjct: 249 GVVWEETLI-------LLPDAIRFIFLSATLPNALQFARWISEIHKQPCHVVYTDYRPTP 301
Query: 700 LSQQYI------GIQV------KKPLQRFQLMNDLC---------------------YEK 726
L Q +I GI + K + F+ + ++ E+
Sbjct: 302 L-QHFIYPQGADGIYMLVDEKNKFKTENFKKVLEVLDHSTRQENYSKSSKKVKKSSSLER 360
Query: 727 VVAVAGKHQ---VLIFVHSRKETAKTARAIRDTALENDTLGRFLKE---DSVSREILQSH 780
++ + ++ +++F S+KE A L NDT + L DS ++ +
Sbjct: 361 IINMVLSNRYDPIIVFCFSKKECEINAHQFGKLDL-NDTENKELVTEIFDSAINQLSEED 419
Query: 781 TDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHT 840
+ + +++ LL G IHH+G+ ++LVE LF +G V++L +T T + G+N+PA T
Sbjct: 420 RGLRQFEEMRSLLLRGIGIHHSGLLPILKELVEILFQEGLVRILFATETFSIGLNMPART 479
Query: 841 VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889
V+ Q ++ W L+ + MQM GRAGR D+ G I+I S
Sbjct: 480 VLFTKAQKFSGNNFRW--LTSGEYMQMSGRAGRRGIDTKGLSIVILDQS 526
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 94/418 (22%), Positives = 177/418 (42%), Gaps = 87/418 (20%)
Query: 1358 DNVLVAAPTGSGKTICSEFAI---LRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKF 1414
++VLV+A T +GKT+ +E+AI L+N Q R +Y +P+++L+ ++YR+ +F
Sbjct: 141 ESVLVSAHTSAGKTVIAEYAIAQALKNRQ--------RVIYTSPIKSLSNQKYRELLSEF 192
Query: 1415 GQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELH 1474
G +G+ +TG+ +++ +I T E A+ +K + + +++ I DE+H
Sbjct: 193 G-DVGL----MTGDVSIN----PSASCLIMTTEILRAM--LYKNSEIMHEIAWVIFDEVH 241
Query: 1475 LIGGQGGPVL--EVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGAT----SHGL 1528
+ + V+ E ++ + + IR + LS +L NA WI H +
Sbjct: 242 YMRDKDRGVVWEETLI--------LLPDAIRFIFLSATLPNALQFARWISEIHKQPCHVV 293
Query: 1529 FNFPPGVRPVPLE--IHIQGVD-------------ITNFEARMQAMTKPT---------- 1563
+ RP PL+ I+ QG D NF+ ++ + T
Sbjct: 294 YT---DYRPTPLQHFIYPQGADGIYMLVDEKNKFKTENFKKVLEVLDHSTRQENYSKSSK 350
Query: 1564 -------FTAIVQHAKNEK--PALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAE 1614
I+ + + P +VF S+K + A D + K E
Sbjct: 351 KVKKSSSLERIINMVLSNRYDPIIVFCFSKKECEINAHQFGKLDLNDTENKELV----TE 406
Query: 1615 EVEPFIDNIQE--------EMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMS 1666
+ I+ + E E +++ L G+G H GL +E+V LF+ G +++ +
Sbjct: 407 IFDSAINQLSEEDRGLRQFEEMRSLLLRGIGIHHSGLLPILKELVEILFQEGLVRILFAT 466
Query: 1667 SSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVIL 1724
+ G+ + A V+ Q + G N + +QM G A R +D G +++
Sbjct: 467 ETFSIGLNMPARTVLFTKAQKFSG--NNFRWLTSGEYMQMSGRAGRRGIDTKGLSIVI 522
>sp|O59801|SKI2_SCHPO Putative ATP-dependent RNA helicase C550.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC550.03c PE=3 SV=1
Length = 1213
Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 105/441 (23%), Positives = 187/441 (42%), Gaps = 102/441 (23%)
Query: 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417
D+V VAA T +GKT+ +E+AI ++ + +A+Y +P++AL+ +++RD++ KF +
Sbjct: 296 DSVFVAAHTSAGKTVVAEYAI-----ALAQKHMTKAIYTSPIKALSNQKFRDFKHKF-ED 349
Query: 1418 LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477
+G+ LTG D+++ +G ++ T E ++ ++ ++ V I DE+H +
Sbjct: 350 VGI----LTG----DVQVNPEGSCLLMTTEILRSM--LYRGADLIRDVEFVIFDEVHYVN 399
Query: 1478 G-QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGAT-SHGLFNFPPGV 1535
+ G V E ++ + + ++ LS ++ N K+ W+G T ++
Sbjct: 400 DLERGVVWEEVIIML-------PPHVTLILLSATVPNTKEFASWVGRTKKKNIYVISTLK 452
Query: 1536 RPVPLEIHI-------QGVD------ITNFEARMQAMTKPTFTAIVQHAKNEK------- 1575
RPVPLE ++ + VD + +++ A+ KP I + KN
Sbjct: 453 RPVPLEHYLWVKQNMFKIVDQHGRFLMDGYKSANDALKKPDKPVIAKDNKNSARGRGAAR 512
Query: 1576 ---------------------------------------PALVFVPSRKYVRLTAVDLMT 1596
P +VFV S+K VD +T
Sbjct: 513 GRGVQTNMMRGRGSAKSVERRDANTWVHLIGHLHKQNLLPVIVFVFSKKRCE-EYVDTLT 571
Query: 1597 YSSMDGDQ----------KSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKT 1646
++ Q K+ L + + P I ++E L G+ H GL
Sbjct: 572 NRDLNNHQEKSEVHVVIEKAVARLKKEDRLLPQIGRMRE-----MLSRGLAVHHGGLLPI 626
Query: 1647 DQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQM 1706
+E+V LF+ G +KV + + GV + A VV GTQ +DG+ D + Q
Sbjct: 627 IKEIVEILFQRGLVKVLFATETFAMGVNMPAKSVVFSGTQKHDGRN--FRDLLPGEYTQC 684
Query: 1707 MGHASRPLLDNSGKCVILCHA 1727
G A R LD +G +IL +
Sbjct: 685 SGRAGRRGLDVTGTVIILSRS 705
Score = 78.6 bits (192), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 92/185 (49%), Gaps = 17/185 (9%)
Query: 736 VLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSND------- 788
V++FV S+K + + + L N +E S +++ +K D
Sbjct: 553 VIVFVFSKKRCEEYVDTLTNRDLNNH------QEKSEVHVVIEKAVARLKKEDRLLPQIG 606
Query: 789 -LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQ 847
++++L G A+HH G+ +++VE LF G V+VL +T T A GVN+PA +V+ GTQ
Sbjct: 607 RMREMLSRGLAVHHGGLLPIIKEIVEILFQRGLVKVLFATETFAMGVNMPAKSVVFSGTQ 666
Query: 848 IYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQ 907
++ + +L P + Q GRAGR D G +II SEL SL + + S+
Sbjct: 667 KHDGRN--FRDLLPGEYTQCSGRAGRRGLDVTGT-VIILSRSELPDTASLRHMIMGPSSK 723
Query: 908 FVSKL 912
+S+
Sbjct: 724 LISQF 728
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 95/203 (46%), Gaps = 32/203 (15%)
Query: 508 LSSADNILLCAPTGAGKTNVAVLTI-LQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566
L D++ + A T AGKT VA I L Q + K +Y +P+KAL +
Sbjct: 292 LEMGDSVFVAAHTSAGKTVVAEYAIALAQKHMT------------KAIYTSPIKALSNQK 339
Query: 567 VGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKL 626
+ ++ + DV + L+GD + E ++ T E + + D + V+
Sbjct: 340 FRDFKHKFE--DVGI--LTGDVQVN----PEGSCLLMTTEILRSMLYRGAD--LIRDVEF 389
Query: 627 LIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLE 685
+I DE+H ++D RG V E ++ H+ L+ LSAT+PN ++ A ++ +
Sbjct: 390 VIFDEVHYVNDLERGVVWEEVII-------MLPPHVTLILLSATVPNTKEFASWVGRTKK 442
Query: 686 KGLFYFDNSYRPVPLSQQYIGIQ 708
K ++ RPVPL + Y+ ++
Sbjct: 443 KNIYVISTLKRPVPL-EHYLWVK 464
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 791,639,124
Number of Sequences: 539616
Number of extensions: 35496241
Number of successful extensions: 167538
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 1037
Number of HSP's that attempted gapping in prelim test: 145931
Number of HSP's gapped (non-prelim): 11456
length of query: 2114
length of database: 191,569,459
effective HSP length: 133
effective length of query: 1981
effective length of database: 119,800,531
effective search space: 237324851911
effective search space used: 237324851911
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 69 (31.2 bits)