Query 000129
Match_columns 2114
No_of_seqs 1293 out of 7539
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 19:45:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000129.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000129hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0951 RNA helicase BRR2, DEA 100.0 4E-288 9E-293 2643.3 97.5 1580 166-1820 1-1626(1674)
2 KOG0952 DNA/RNA helicase MER3/ 100.0 4E-196 8E-201 1808.4 55.2 1191 418-1651 35-1229(1230)
3 KOG0951 RNA helicase BRR2, DEA 100.0 2.5E-88 5.3E-93 848.8 56.5 749 1336-2107 304-1107(1674)
4 PRK02362 ski2-like helicase; P 100.0 1.2E-86 2.6E-91 899.4 61.6 663 482-1196 8-706 (737)
5 KOG0952 DNA/RNA helicase MER3/ 100.0 4.5E-86 9.9E-91 824.1 51.4 756 1304-2107 76-891 (1230)
6 PRK00254 ski2-like helicase; P 100.0 6.2E-83 1.3E-87 861.2 62.0 658 482-1195 8-700 (720)
7 COG1204 Superfamily II helicas 100.0 1.5E-84 3.3E-89 852.6 35.0 738 482-1258 16-764 (766)
8 PRK02362 ski2-like helicase; P 100.0 2.9E-81 6.3E-86 847.0 58.5 631 1330-1992 11-706 (737)
9 PRK01172 ski2-like helicase; P 100.0 1.6E-78 3.5E-83 816.0 61.7 643 482-1195 8-667 (674)
10 PRK00254 ski2-like helicase; P 100.0 1.7E-78 3.6E-83 818.2 57.0 618 1338-1992 20-701 (720)
11 PRK01172 ski2-like helicase; P 100.0 8.2E-75 1.8E-79 780.0 57.9 602 1338-1991 20-667 (674)
12 COG1204 Superfamily II helicas 100.0 6.9E-64 1.5E-68 657.8 45.3 635 1330-1990 18-730 (766)
13 COG1202 Superfamily II helicas 100.0 5.8E-50 1.3E-54 471.7 41.4 553 481-1135 200-828 (830)
14 smart00611 SEC63 Domain of unk 100.0 1.6E-50 3.4E-55 497.3 37.2 307 1785-2107 2-312 (312)
15 smart00611 SEC63 Domain of unk 100.0 1.2E-50 2.6E-55 498.3 31.3 308 994-1302 2-312 (312)
16 PF02889 Sec63: Sec63 Brl doma 100.0 6.6E-49 1.4E-53 484.0 34.1 307 1787-2106 1-314 (314)
17 COG1202 Superfamily II helicas 100.0 2.2E-45 4.8E-50 433.2 41.3 528 1330-1924 203-826 (830)
18 PF02889 Sec63: Sec63 Brl doma 100.0 4.3E-47 9.3E-52 467.9 25.1 305 996-1301 1-314 (314)
19 KOG0330 ATP-dependent RNA heli 100.0 3.6E-45 7.8E-50 416.8 28.2 336 491-903 79-424 (476)
20 KOG0950 DNA polymerase theta/e 100.0 7.6E-45 1.6E-49 455.8 30.2 658 481-1181 206-934 (1008)
21 PRK13767 ATP-dependent helicas 100.0 9.7E-43 2.1E-47 474.6 42.7 414 480-944 16-460 (876)
22 COG1201 Lhr Lhr-like helicases 100.0 9.8E-43 2.1E-47 449.5 37.3 450 479-1013 5-471 (814)
23 KOG0330 ATP-dependent RNA heli 100.0 5.5E-43 1.2E-47 399.0 29.7 342 1327-1738 68-417 (476)
24 KOG0331 ATP-dependent RNA heli 100.0 3E-42 6.4E-47 422.8 31.5 344 483-893 99-452 (519)
25 TIGR03817 DECH_helic helicase/ 100.0 1E-41 2.2E-46 455.6 38.8 354 481-892 20-389 (742)
26 KOG0331 ATP-dependent RNA heli 100.0 2.9E-41 6.2E-46 414.1 30.9 335 1331-1737 102-457 (519)
27 TIGR03817 DECH_helic helicase/ 100.0 1E-40 2.2E-45 445.9 38.6 343 1338-1729 33-387 (742)
28 PLN00206 DEAD-box ATP-dependen 100.0 1.4E-40 3.1E-45 433.0 38.0 346 481-896 127-482 (518)
29 KOG0338 ATP-dependent RNA heli 100.0 1.2E-41 2.6E-46 397.4 24.8 347 491-908 199-552 (691)
30 KOG0947 Cytoplasmic exosomal R 100.0 4.6E-41 9.9E-46 415.9 30.6 400 495-939 297-771 (1248)
31 PRK10590 ATP-dependent RNA hel 100.0 1.2E-40 2.6E-45 429.0 35.3 345 481-895 7-358 (456)
32 PRK04837 ATP-dependent RNA hel 100.0 1.2E-40 2.5E-45 426.7 34.9 346 482-895 15-368 (423)
33 PLN00206 DEAD-box ATP-dependen 100.0 2.1E-40 4.6E-45 431.4 37.8 360 1314-1741 118-488 (518)
34 PRK11776 ATP-dependent RNA hel 100.0 2.1E-40 4.5E-45 428.9 35.8 337 482-895 11-355 (460)
35 PTZ00110 helicase; Provisional 100.0 2E-40 4.3E-45 432.3 35.9 343 481-895 136-490 (545)
36 PRK10590 ATP-dependent RNA hel 100.0 3.6E-40 7.9E-45 424.5 37.7 349 1327-1741 8-365 (456)
37 PRK04537 ATP-dependent RNA hel 100.0 3.7E-40 8.1E-45 430.8 36.3 345 482-893 16-368 (572)
38 PRK11776 ATP-dependent RNA hel 100.0 1.3E-39 2.9E-44 421.5 38.0 345 1327-1740 11-361 (460)
39 PTZ00110 helicase; Provisional 100.0 1.3E-39 2.9E-44 424.6 38.3 352 1326-1742 136-498 (545)
40 PRK09751 putative ATP-dependen 100.0 1.2E-39 2.7E-44 445.6 39.4 401 516-941 1-444 (1490)
41 COG0513 SrmB Superfamily II DN 100.0 4.8E-40 1E-44 424.5 33.4 340 482-896 36-388 (513)
42 PRK04837 ATP-dependent RNA hel 100.0 1.4E-39 3.1E-44 416.7 36.2 344 1326-1737 14-371 (423)
43 KOG0333 U5 snRNP-like RNA heli 100.0 4.5E-40 9.8E-45 386.3 28.2 343 491-896 263-631 (673)
44 PRK11192 ATP-dependent RNA hel 100.0 2E-39 4.3E-44 417.4 36.6 342 481-895 7-358 (434)
45 PRK13767 ATP-dependent helicas 100.0 4E-39 8.6E-44 439.3 41.5 350 1330-1725 20-395 (876)
46 KOG0338 ATP-dependent RNA heli 100.0 2.1E-40 4.6E-45 387.0 24.6 348 1326-1737 187-542 (691)
47 KOG0342 ATP-dependent RNA heli 100.0 6E-40 1.3E-44 385.7 28.4 345 482-898 89-446 (543)
48 KOG0948 Nuclear exosomal RNA h 100.0 9.5E-41 2.1E-45 403.7 21.1 392 495-923 129-575 (1041)
49 PTZ00424 helicase 45; Provisio 100.0 4.2E-39 9E-44 411.6 37.4 349 1326-1741 34-387 (401)
50 PLN03137 ATP-dependent DNA hel 100.0 8.9E-39 1.9E-43 418.3 40.6 363 454-900 404-798 (1195)
51 PRK11192 ATP-dependent RNA hel 100.0 2.9E-39 6.3E-44 415.9 35.6 336 1338-1739 20-363 (434)
52 PRK04537 ATP-dependent RNA hel 100.0 5.3E-39 1.1E-43 420.0 38.1 346 1327-1738 16-374 (572)
53 PRK11634 ATP-dependent RNA hel 100.0 3.4E-39 7.3E-44 423.3 35.4 336 482-895 13-358 (629)
54 COG0513 SrmB Superfamily II DN 100.0 4.2E-39 9.1E-44 415.7 35.4 346 1327-1741 36-394 (513)
55 PRK01297 ATP-dependent RNA hel 100.0 5.2E-39 1.1E-43 416.8 36.2 344 481-892 93-445 (475)
56 KOG0345 ATP-dependent RNA heli 100.0 7.1E-39 1.5E-43 373.2 32.1 347 482-897 13-372 (567)
57 PTZ00424 helicase 45; Provisio 100.0 6.5E-39 1.4E-43 409.8 34.3 339 482-897 35-382 (401)
58 KOG4434 Molecular chaperone SE 100.0 2.2E-39 4.8E-44 362.0 25.5 299 1812-2112 8-483 (520)
59 PRK11634 ATP-dependent RNA hel 100.0 2E-38 4.3E-43 416.1 38.9 345 1327-1739 13-363 (629)
60 COG1201 Lhr Lhr-like helicases 100.0 1.5E-38 3.2E-43 410.9 36.2 352 1330-1737 10-370 (814)
61 KOG0340 ATP-dependent RNA heli 100.0 2.7E-39 5.8E-44 364.8 25.2 343 479-895 11-367 (442)
62 KOG0340 ATP-dependent RNA heli 100.0 5E-39 1.1E-43 362.7 27.2 361 1311-1746 6-380 (442)
63 PRK01297 ATP-dependent RNA hel 100.0 3.9E-38 8.5E-43 408.6 39.3 349 1327-1742 94-456 (475)
64 KOG0326 ATP-dependent RNA heli 100.0 6.5E-40 1.4E-44 363.2 18.6 335 483-895 94-435 (459)
65 KOG0348 ATP-dependent RNA heli 100.0 1.2E-38 2.6E-43 374.6 30.1 369 491-899 155-563 (708)
66 KOG0343 RNA Helicase [RNA proc 100.0 5.2E-39 1.1E-43 378.3 26.3 345 491-906 87-440 (758)
67 KOG0345 ATP-dependent RNA heli 100.0 3.8E-38 8.2E-43 367.1 32.2 355 1330-1746 16-381 (567)
68 PRK09751 putative ATP-dependen 100.0 2.1E-38 4.6E-43 433.5 34.0 350 1362-1733 1-389 (1490)
69 KOG0342 ATP-dependent RNA heli 100.0 2.1E-38 4.5E-43 372.8 29.0 348 1330-1737 92-446 (543)
70 KOG0328 Predicted ATP-dependen 100.0 9.7E-39 2.1E-43 348.8 22.7 335 485-896 38-380 (400)
71 KOG0333 U5 snRNP-like RNA heli 100.0 8.8E-38 1.9E-42 367.1 31.5 377 1290-1737 224-633 (673)
72 KOG0947 Cytoplasmic exosomal R 100.0 3.9E-38 8.4E-43 390.0 26.5 363 1341-1737 297-734 (1248)
73 COG4581 Superfamily II RNA hel 100.0 1.2E-37 2.7E-42 406.0 32.4 410 495-940 119-587 (1041)
74 KOG0328 Predicted ATP-dependen 100.0 6.6E-38 1.4E-42 342.3 24.9 353 1318-1737 25-382 (400)
75 KOG0950 DNA polymerase theta/e 100.0 9.7E-37 2.1E-41 383.2 36.0 613 1338-1976 220-934 (1008)
76 TIGR00614 recQ_fam ATP-depende 100.0 6.2E-37 1.3E-41 395.7 34.2 328 491-899 7-343 (470)
77 TIGR00614 recQ_fam ATP-depende 100.0 8.7E-37 1.9E-41 394.3 34.2 333 1332-1739 3-344 (470)
78 KOG0343 RNA Helicase [RNA proc 100.0 2.7E-37 5.8E-42 363.9 26.1 344 1330-1737 79-431 (758)
79 KOG0347 RNA helicase [RNA proc 100.0 2.6E-38 5.7E-43 372.7 16.9 383 482-924 188-615 (731)
80 KOG0326 ATP-dependent RNA heli 100.0 8.3E-38 1.8E-42 346.5 19.3 341 1326-1737 91-438 (459)
81 PLN03137 ATP-dependent DNA hel 100.0 7.9E-37 1.7E-41 400.1 31.5 334 1330-1738 450-797 (1195)
82 KOG0348 ATP-dependent RNA heli 100.0 5.3E-37 1.1E-41 360.8 26.7 382 1317-1734 141-560 (708)
83 KOG0948 Nuclear exosomal RNA h 100.0 2.1E-37 4.6E-42 374.7 23.0 367 1341-1737 129-549 (1041)
84 KOG0335 ATP-dependent RNA heli 100.0 3.3E-37 7.2E-42 371.4 24.5 346 482-890 81-445 (482)
85 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.5E-35 3.2E-40 394.7 34.4 422 503-1038 9-443 (819)
86 PRK11057 ATP-dependent DNA hel 100.0 2.3E-35 4.9E-40 390.2 35.8 334 478-901 8-355 (607)
87 KOG0332 ATP-dependent RNA heli 100.0 1.6E-35 3.5E-40 335.9 26.7 341 483-890 99-444 (477)
88 TIGR01389 recQ ATP-dependent D 100.0 2.5E-35 5.4E-40 391.7 32.6 327 491-904 9-346 (591)
89 PRK11664 ATP-dependent RNA hel 100.0 5.4E-35 1.2E-39 390.7 34.1 412 503-1023 12-432 (812)
90 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.4E-34 3E-39 385.4 37.2 390 1354-1814 14-429 (819)
91 COG4581 Superfamily II RNA hel 100.0 1.8E-35 4E-40 385.8 27.7 358 1341-1728 119-537 (1041)
92 KOG0336 ATP-dependent RNA heli 100.0 1.4E-35 3E-40 337.5 22.5 335 491-897 238-580 (629)
93 PRK11057 ATP-dependent DNA hel 100.0 1.1E-34 2.4E-39 383.6 34.1 333 1324-1737 9-352 (607)
94 KOG0350 DEAD-box ATP-dependent 100.0 1.5E-34 3.2E-39 338.8 29.8 346 1338-1738 156-550 (620)
95 TIGR01389 recQ ATP-dependent D 100.0 1.9E-34 4.2E-39 383.3 35.1 329 1331-1738 4-341 (591)
96 KOG0335 ATP-dependent RNA heli 100.0 2.6E-35 5.6E-40 355.1 23.5 341 1338-1741 93-457 (482)
97 PRK11664 ATP-dependent RNA hel 100.0 3.5E-34 7.6E-39 382.9 36.5 391 1355-1814 18-432 (812)
98 KOG0347 RNA helicase [RNA proc 100.0 4.2E-36 9.2E-41 354.2 15.9 367 1318-1737 179-579 (731)
99 KOG0336 ATP-dependent RNA heli 100.0 8.3E-35 1.8E-39 331.2 24.1 346 1330-1740 230-584 (629)
100 KOG0350 DEAD-box ATP-dependent 100.0 1.6E-34 3.4E-39 338.6 25.5 345 491-899 155-550 (620)
101 KOG0341 DEAD-box protein abstr 100.0 1.5E-35 3.2E-40 335.0 16.3 338 482-890 177-529 (610)
102 KOG0339 ATP-dependent RNA heli 100.0 2.6E-34 5.7E-39 335.2 24.2 334 491-895 241-581 (731)
103 KOG0332 ATP-dependent RNA heli 100.0 4.5E-34 9.8E-39 324.2 25.0 350 1312-1729 82-444 (477)
104 PRK11131 ATP-dependent RNA hel 100.0 1.4E-33 3.1E-38 379.5 34.0 441 502-1051 80-535 (1294)
105 KOG0339 ATP-dependent RNA heli 100.0 1.2E-33 2.6E-38 329.7 28.0 342 1329-1738 232-585 (731)
106 TIGR00580 mfd transcription-re 100.0 1.8E-32 3.9E-37 368.6 43.5 313 1332-1728 444-770 (926)
107 KOG0346 RNA helicase [RNA proc 100.0 1.8E-33 3.8E-38 324.9 25.7 338 1327-1730 26-412 (569)
108 TIGR00580 mfd transcription-re 100.0 8E-33 1.7E-37 371.9 35.9 310 491-889 448-770 (926)
109 KOG0346 RNA helicase [RNA proc 100.0 2.5E-33 5.4E-38 323.7 25.6 341 482-892 26-413 (569)
110 TIGR01967 DEAH_box_HrpA ATP-de 100.0 8.8E-33 1.9E-37 373.7 34.3 441 502-1051 73-526 (1283)
111 KOG0341 DEAD-box protein abstr 100.0 5.7E-35 1.2E-39 330.3 11.0 388 1266-1731 124-531 (610)
112 KOG4284 DEAD box protein [Tran 100.0 5.8E-34 1.3E-38 339.7 19.1 330 491-890 43-380 (980)
113 KOG0334 RNA helicase [RNA proc 100.0 6.4E-33 1.4E-37 354.4 27.4 362 491-923 383-757 (997)
114 PRK10917 ATP-dependent DNA hel 100.0 2.5E-32 5.4E-37 364.8 34.3 307 492-888 259-588 (681)
115 KOG0344 ATP-dependent RNA heli 100.0 4.2E-33 9E-38 336.4 23.0 348 482-895 143-501 (593)
116 TIGR00643 recG ATP-dependent D 100.0 2.1E-32 4.6E-37 363.5 31.8 312 492-888 233-565 (630)
117 KOG0344 ATP-dependent RNA heli 100.0 1.3E-32 2.8E-37 332.2 23.3 334 1338-1735 155-502 (593)
118 PRK11131 ATP-dependent RNA hel 100.0 2.5E-31 5.4E-36 358.0 38.0 429 1348-1841 80-534 (1294)
119 PRK10689 transcription-repair 100.0 9.5E-31 2.1E-35 359.2 44.0 314 1332-1728 593-919 (1147)
120 PRK10917 ATP-dependent DNA hel 100.0 3E-31 6.5E-36 354.4 37.8 314 1341-1728 261-589 (681)
121 KOG4284 DEAD box protein [Tran 100.0 1.1E-32 2.5E-37 328.7 21.0 341 1330-1730 35-381 (980)
122 PRK10689 transcription-repair 100.0 2.1E-31 4.5E-36 365.7 35.9 308 495-889 600-919 (1147)
123 KOG0922 DEAH-box RNA helicase 100.0 2.4E-31 5.3E-36 326.1 32.1 442 505-1052 60-511 (674)
124 TIGR00643 recG ATP-dependent D 100.0 5.6E-31 1.2E-35 350.0 37.2 319 1338-1728 233-566 (630)
125 PHA02653 RNA helicase NPH-II; 100.0 8E-31 1.7E-35 341.6 35.4 327 498-890 167-515 (675)
126 COG0514 RecQ Superfamily II DN 100.0 4.7E-31 1E-35 330.5 29.3 323 491-903 13-351 (590)
127 COG1205 Distinct helicase fami 100.0 5E-31 1.1E-35 352.8 30.8 349 491-891 66-424 (851)
128 COG0514 RecQ Superfamily II DN 100.0 8.1E-31 1.7E-35 328.4 30.5 327 1331-1739 8-348 (590)
129 TIGR01967 DEAH_box_HrpA ATP-de 100.0 3.6E-30 7.8E-35 348.5 38.6 433 1339-1840 62-524 (1283)
130 KOG0923 mRNA splicing factor A 100.0 1.7E-30 3.7E-35 312.2 29.0 479 499-1087 269-756 (902)
131 KOG0327 Translation initiation 100.0 4.4E-31 9.6E-36 304.8 22.8 346 1324-1739 30-381 (397)
132 TIGR02621 cas3_GSU0051 CRISPR- 100.0 2.9E-30 6.2E-35 336.3 32.5 326 485-885 7-388 (844)
133 KOG0337 ATP-dependent RNA heli 100.0 1.6E-31 3.5E-36 307.7 18.0 347 1321-1736 22-376 (529)
134 KOG0334 RNA helicase [RNA proc 100.0 5.2E-31 1.1E-35 337.0 24.5 346 1321-1731 366-723 (997)
135 KOG0922 DEAH-box RNA helicase 100.0 1.7E-29 3.6E-34 310.1 33.6 423 1354-1840 63-508 (674)
136 PHA02653 RNA helicase NPH-II; 100.0 1E-29 2.2E-34 331.3 33.6 390 1344-1797 167-584 (675)
137 KOG0923 mRNA splicing factor A 100.0 5.1E-30 1.1E-34 308.1 27.8 441 1343-1845 267-730 (902)
138 TIGR03158 cas3_cyano CRISPR-as 100.0 8.2E-30 1.8E-34 316.9 30.7 301 499-872 1-357 (357)
139 COG1205 Distinct helicase fami 100.0 7.6E-30 1.6E-34 341.5 31.9 352 1332-1727 60-421 (851)
140 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.1E-29 2.4E-34 330.8 32.3 320 1332-1724 4-388 (844)
141 KOG0337 ATP-dependent RNA heli 100.0 2.8E-31 6.1E-36 305.8 15.3 332 491-897 39-376 (529)
142 KOG0327 Translation initiation 100.0 1.2E-30 2.5E-35 301.4 20.3 333 486-897 38-378 (397)
143 COG1643 HrpA HrpA-like helicas 100.0 7.1E-30 1.5E-34 333.5 29.3 429 502-1038 56-495 (845)
144 KOG0924 mRNA splicing factor A 100.0 1.4E-29 3E-34 303.8 29.1 454 499-1056 360-822 (1042)
145 TIGR01587 cas3_core CRISPR-ass 100.0 7.2E-30 1.6E-34 321.2 27.8 302 514-890 2-337 (358)
146 TIGR03158 cas3_cyano CRISPR-as 100.0 1.4E-29 3E-34 314.9 28.9 299 1345-1711 1-357 (357)
147 TIGR01587 cas3_core CRISPR-ass 100.0 1.3E-29 2.9E-34 318.7 28.1 324 1360-1773 2-357 (358)
148 COG1111 MPH1 ERCC4-like helica 100.0 9.6E-29 2.1E-33 294.4 31.0 345 1337-1735 11-490 (542)
149 COG1111 MPH1 ERCC4-like helica 100.0 1.9E-28 4E-33 292.0 33.5 342 492-896 12-490 (542)
150 COG1643 HrpA HrpA-like helicas 100.0 1.7E-28 3.7E-33 320.6 34.1 410 1349-1826 57-492 (845)
151 KOG0924 mRNA splicing factor A 100.0 1.7E-27 3.7E-32 286.0 32.3 441 1344-1847 359-822 (1042)
152 PHA02558 uvsW UvsW helicase; P 100.0 6E-28 1.3E-32 313.6 28.9 359 444-885 60-449 (501)
153 PRK05580 primosome assembly pr 100.0 2.3E-27 4.9E-32 315.6 32.3 389 1340-1755 143-591 (679)
154 PHA02558 uvsW UvsW helicase; P 100.0 3.8E-27 8.2E-32 306.1 29.9 314 1340-1724 113-449 (501)
155 KOG0352 ATP-dependent DNA heli 100.0 8.4E-28 1.8E-32 275.9 19.4 330 491-898 15-371 (641)
156 PRK05580 primosome assembly pr 100.0 6.7E-27 1.4E-31 311.2 30.8 370 495-895 144-555 (679)
157 KOG0354 DEAD-box like helicase 100.0 5E-27 1.1E-31 296.3 27.3 342 491-892 58-532 (746)
158 KOG0949 Predicted helicase, DE 100.0 3.8E-27 8.3E-32 293.1 24.7 366 495-888 511-1047(1330)
159 KOG0354 DEAD-box like helicase 99.9 2.4E-26 5.2E-31 290.2 28.9 343 1335-1729 56-530 (746)
160 KOG0920 ATP-dependent RNA heli 99.9 9.3E-26 2E-30 292.7 30.6 411 1343-1810 175-636 (924)
161 TIGR00595 priA primosomal prot 99.9 2.7E-26 5.9E-31 295.0 25.2 365 1361-1755 1-423 (505)
162 PRK14701 reverse gyrase; Provi 99.9 2.1E-26 4.6E-31 322.5 26.2 327 491-900 76-467 (1638)
163 KOG0351 ATP-dependent DNA heli 99.9 3.3E-26 7.2E-31 302.9 25.8 333 1332-1738 256-602 (941)
164 PRK09401 reverse gyrase; Revie 99.9 6.8E-26 1.5E-30 312.2 27.9 304 492-873 78-430 (1176)
165 KOG0352 ATP-dependent DNA heli 99.9 7.3E-26 1.6E-30 260.1 23.2 329 1331-1737 10-371 (641)
166 KOG0351 ATP-dependent DNA heli 99.9 3.1E-26 6.8E-31 303.2 23.1 328 491-901 260-604 (941)
167 KOG0920 ATP-dependent RNA heli 99.9 3.9E-25 8.4E-30 287.0 31.6 428 500-1025 177-642 (924)
168 PRK13766 Hef nuclease; Provisi 99.9 7.7E-25 1.7E-29 301.6 36.7 325 1339-1729 13-480 (773)
169 TIGR00603 rad25 DNA repair hel 99.9 3.7E-25 8.1E-30 286.5 30.5 362 443-893 210-611 (732)
170 TIGR00595 priA primosomal prot 99.9 4.9E-26 1.1E-30 292.6 22.2 346 515-894 1-386 (505)
171 KOG0926 DEAH-box RNA helicase 99.9 9.3E-26 2E-30 275.5 22.9 453 506-1024 266-799 (1172)
172 PRK13766 Hef nuclease; Provisi 99.9 1.4E-24 3E-29 299.1 37.0 333 493-890 13-480 (773)
173 PRK12898 secA preprotein trans 99.9 4.8E-25 1E-29 282.5 28.9 319 495-890 103-587 (656)
174 KOG0925 mRNA splicing factor A 99.9 5.6E-25 1.2E-29 256.8 26.2 440 499-1047 50-503 (699)
175 PRK14701 reverse gyrase; Provi 99.9 3.4E-25 7.3E-30 310.5 28.4 331 1331-1737 67-465 (1638)
176 KOG0353 ATP-dependent DNA heli 99.9 1.2E-25 2.7E-30 253.4 19.2 330 485-896 85-474 (695)
177 PRK09200 preprotein translocas 99.9 1.6E-24 3.5E-29 283.3 32.1 324 492-890 76-542 (790)
178 KOG0329 ATP-dependent RNA heli 99.9 2.1E-26 4.6E-31 248.7 11.4 300 483-895 51-361 (387)
179 KOG0949 Predicted helicase, DE 99.9 7.7E-25 1.7E-29 272.8 26.7 382 1341-1746 511-1069(1330)
180 PRK09401 reverse gyrase; Revie 99.9 7.7E-25 1.7E-29 301.8 29.5 303 1330-1712 67-430 (1176)
181 TIGR03714 secA2 accessory Sec 99.9 3.1E-24 6.7E-29 277.7 32.2 322 496-890 69-538 (762)
182 TIGR00603 rad25 DNA repair hel 99.9 2.3E-24 4.9E-29 279.3 29.7 317 1340-1731 254-610 (732)
183 KOG0926 DEAH-box RNA helicase 99.9 1.7E-24 3.7E-29 264.5 26.1 433 1349-1815 264-799 (1172)
184 KOG0329 ATP-dependent RNA heli 99.9 3.2E-25 6.9E-30 239.7 15.7 296 1327-1731 49-358 (387)
185 COG1200 RecG RecG-like helicas 99.9 1.3E-23 2.9E-28 261.7 31.7 315 1341-1729 262-592 (677)
186 KOG0353 ATP-dependent DNA heli 99.9 1.1E-24 2.5E-29 245.7 20.0 333 1320-1727 74-466 (695)
187 PRK12898 secA preprotein trans 99.9 1.1E-23 2.3E-28 270.1 30.2 322 1341-1729 103-587 (656)
188 COG1200 RecG RecG-like helicas 99.9 5.6E-24 1.2E-28 265.1 26.6 315 495-890 262-592 (677)
189 TIGR00963 secA preprotein tran 99.9 1.8E-23 3.9E-28 268.7 30.3 323 495-890 56-518 (745)
190 PRK09694 helicase Cas3; Provis 99.9 4.3E-23 9.3E-28 275.2 34.7 315 492-876 283-664 (878)
191 TIGR01054 rgy reverse gyrase. 99.9 1.3E-23 2.8E-28 290.3 29.9 284 493-853 76-409 (1171)
192 COG1197 Mfd Transcription-repa 99.9 2.4E-22 5.3E-27 263.1 39.0 403 1341-1824 594-1034(1139)
193 PRK09200 preprotein translocas 99.9 4.1E-23 9E-28 270.2 28.5 325 1341-1729 78-542 (790)
194 PRK09694 helicase Cas3; Provis 99.9 1.2E-22 2.5E-27 271.1 32.6 316 1339-1715 284-664 (878)
195 COG1198 PriA Primosomal protei 99.9 2.5E-23 5.4E-28 268.9 24.7 427 1339-1798 196-688 (730)
196 TIGR03714 secA2 accessory Sec 99.9 9.3E-23 2E-27 264.1 29.4 323 1341-1729 68-538 (762)
197 KOG0925 mRNA splicing factor A 99.9 8.1E-23 1.8E-27 238.9 24.9 430 1332-1825 36-491 (699)
198 TIGR01054 rgy reverse gyrase. 99.9 3.2E-22 7E-27 276.6 31.5 288 1330-1682 65-403 (1171)
199 TIGR00963 secA preprotein tran 99.9 2.9E-22 6.3E-27 257.7 28.5 322 1341-1729 56-518 (745)
200 COG4098 comFA Superfamily II D 99.9 1.1E-21 2.5E-26 222.0 29.4 317 1340-1729 96-417 (441)
201 KOG0349 Putative DEAD-box RNA 99.9 6.3E-23 1.4E-27 235.6 12.8 288 1391-1731 287-618 (725)
202 COG1061 SSL2 DNA or RNA helica 99.9 2.2E-21 4.8E-26 247.3 26.9 296 493-874 34-376 (442)
203 COG4098 comFA Superfamily II D 99.9 8E-21 1.7E-25 215.2 28.0 311 495-886 97-413 (441)
204 COG1061 SSL2 DNA or RNA helica 99.9 4.7E-21 1E-25 244.2 29.7 299 1339-1713 34-376 (442)
205 COG1197 Mfd Transcription-repa 99.9 5.4E-21 1.2E-25 250.7 29.7 307 495-890 594-914 (1139)
206 COG1198 PriA Primosomal protei 99.9 3.1E-21 6.7E-26 249.7 26.0 373 493-897 196-611 (730)
207 KOG0349 Putative DEAD-box RNA 99.9 4.1E-22 9E-27 228.9 15.7 288 549-888 285-614 (725)
208 PRK11448 hsdR type I restricti 99.8 1.3E-19 2.8E-24 249.0 29.0 327 1341-1714 413-801 (1123)
209 PRK04914 ATP-dependent helicas 99.8 7.2E-19 1.6E-23 236.3 35.2 324 495-888 152-604 (956)
210 PRK11448 hsdR type I restricti 99.8 1.7E-19 3.6E-24 248.0 29.1 324 495-875 413-801 (1123)
211 cd00268 DEADc DEAD-box helicas 99.8 1.5E-19 3.3E-24 208.9 20.6 184 482-683 6-195 (203)
212 PRK13104 secA preprotein trans 99.8 8E-19 1.7E-23 228.7 28.5 127 495-635 82-214 (896)
213 PRK04914 ATP-dependent helicas 99.8 3.2E-18 6.9E-23 230.2 33.6 326 1340-1725 151-600 (956)
214 PRK12906 secA preprotein trans 99.8 1.7E-18 3.6E-23 225.2 28.6 352 495-915 80-592 (796)
215 cd00268 DEADc DEAD-box helicas 99.8 4.2E-19 9E-24 205.2 19.7 174 1330-1513 9-186 (203)
216 COG1203 CRISPR-associated heli 99.8 1E-18 2.2E-23 235.5 22.6 328 496-890 196-551 (733)
217 PF00270 DEAD: DEAD/DEAH box h 99.8 5.1E-19 1.1E-23 198.1 15.6 158 497-671 1-163 (169)
218 PF00270 DEAD: DEAD/DEAH box h 99.8 1.6E-18 3.4E-23 194.1 17.3 158 1343-1512 1-163 (169)
219 PRK13104 secA preprotein trans 99.8 1.2E-17 2.6E-22 217.9 26.8 112 1360-1477 98-215 (896)
220 COG1203 CRISPR-associated heli 99.8 5E-18 1.1E-22 228.9 23.7 327 1342-1730 196-552 (733)
221 PRK12904 preprotein translocas 99.8 2.6E-17 5.6E-22 215.1 29.0 126 495-635 81-213 (830)
222 PRK12899 secA preprotein trans 99.8 1.4E-16 3.1E-21 207.0 32.7 133 492-636 86-228 (970)
223 PRK12906 secA preprotein trans 99.8 5E-17 1.1E-21 211.6 25.3 331 1341-1729 80-554 (796)
224 PRK12904 preprotein translocas 99.8 1.1E-16 2.3E-21 209.3 27.9 126 1341-1476 81-213 (830)
225 PRK13107 preprotein translocas 99.7 1E-16 2.2E-21 208.5 26.6 128 495-636 82-215 (908)
226 PRK12899 secA preprotein trans 99.7 8E-16 1.7E-20 200.2 29.9 133 1338-1477 86-228 (970)
227 COG5407 SEC63 Preprotein trans 99.7 1.1E-16 2.3E-21 185.9 16.9 280 1797-2107 225-546 (610)
228 TIGR01407 dinG_rel DnaQ family 99.7 4.4E-15 9.5E-20 204.8 32.6 134 733-903 674-829 (850)
229 KOG4434 Molecular chaperone SE 99.7 1.3E-15 2.9E-20 172.3 20.6 279 1021-1301 8-477 (520)
230 PRK13107 preprotein translocas 99.7 1.5E-15 3.2E-20 197.7 24.1 112 1360-1477 98-215 (908)
231 TIGR00348 hsdR type I site-spe 99.7 2.9E-15 6.3E-20 200.2 27.0 359 1341-1739 238-660 (667)
232 KOG4150 Predicted ATP-dependen 99.7 6.2E-16 1.3E-20 183.4 17.9 381 1330-1753 273-667 (1034)
233 TIGR01407 dinG_rel DnaQ family 99.7 1.5E-14 3.3E-19 199.5 33.3 201 1502-1740 596-828 (850)
234 TIGR00348 hsdR type I site-spe 99.6 1.3E-14 2.7E-19 194.2 27.7 344 496-888 239-648 (667)
235 KOG0953 Mitochondrial RNA heli 99.6 1.8E-15 3.9E-20 181.5 16.6 289 514-900 194-487 (700)
236 TIGR00631 uvrb excinuclease AB 99.6 3.4E-14 7.3E-19 187.5 30.3 126 1562-1730 430-555 (655)
237 COG1110 Reverse gyrase [DNA re 99.6 1.9E-13 4.1E-18 175.0 31.3 288 1330-1686 69-416 (1187)
238 COG4096 HsdR Type I site-speci 99.6 2.2E-14 4.7E-19 181.6 22.1 310 1340-1713 164-525 (875)
239 KOG4150 Predicted ATP-dependen 99.6 1.8E-14 3.8E-19 171.2 19.4 355 484-895 273-647 (1034)
240 PRK14873 primosome assembly pr 99.6 3.6E-14 7.7E-19 186.5 23.8 343 1363-1751 166-576 (665)
241 COG4096 HsdR Type I site-speci 99.6 9.3E-14 2E-18 176.0 25.9 310 493-875 163-526 (875)
242 PLN03142 Probable chromatin-re 99.6 9.2E-14 2E-18 188.0 27.7 324 495-890 169-600 (1033)
243 PLN03142 Probable chromatin-re 99.6 2.3E-13 5E-18 184.1 29.5 351 1341-1729 169-600 (1033)
244 PRK14873 primosome assembly pr 99.6 1.4E-14 3.1E-19 190.3 16.6 331 518-887 167-537 (665)
245 PRK05298 excinuclease ABC subu 99.6 5.6E-13 1.2E-17 177.7 30.9 124 1563-1729 435-558 (652)
246 TIGR00631 uvrb excinuclease AB 99.6 3.8E-13 8.3E-18 177.6 28.0 115 732-891 441-555 (655)
247 PRK07246 bifunctional ATP-depe 99.5 1.4E-12 3.1E-17 177.2 31.8 83 491-586 242-328 (820)
248 PRK07246 bifunctional ATP-depe 99.5 1.6E-12 3.4E-17 176.8 31.6 346 1341-1740 245-797 (820)
249 smart00487 DEXDc DEAD-like hel 99.5 2E-13 4.2E-18 156.4 19.2 171 1338-1520 5-179 (201)
250 KOG0953 Mitochondrial RNA heli 99.5 4.1E-13 8.9E-18 161.6 21.6 278 1358-1725 192-474 (700)
251 PRK12900 secA preprotein trans 99.5 9.3E-13 2E-17 172.3 26.7 126 496-635 139-270 (1025)
252 KOG1123 RNA polymerase II tran 99.5 3.1E-14 6.7E-19 167.9 9.8 367 443-895 257-659 (776)
253 smart00487 DEXDc DEAD-like hel 99.5 2.7E-13 5.8E-18 155.3 17.2 164 492-673 5-173 (201)
254 COG0556 UvrB Helicase subunit 99.5 2.5E-12 5.3E-17 154.8 25.5 170 660-888 386-556 (663)
255 PRK05298 excinuclease ABC subu 99.5 3E-12 6.5E-17 170.9 28.1 113 732-889 445-557 (652)
256 PRK08074 bifunctional ATP-depe 99.5 1.4E-11 3E-16 170.9 35.6 135 733-903 752-908 (928)
257 COG1110 Reverse gyrase [DNA re 99.5 1.5E-12 3.3E-17 166.9 23.5 282 492-853 80-417 (1187)
258 COG0556 UvrB Helicase subunit 99.5 7.8E-12 1.7E-16 150.6 26.5 160 1562-1765 434-598 (663)
259 PRK12326 preprotein translocas 99.5 1.1E-11 2.3E-16 158.6 28.6 127 495-635 78-210 (764)
260 PRK13103 secA preprotein trans 99.4 2.4E-11 5.2E-16 159.1 27.2 127 495-635 82-214 (913)
261 KOG0921 Dosage compensation co 99.4 1.9E-12 4.1E-17 162.0 11.4 409 1350-1809 386-864 (1282)
262 PRK08074 bifunctional ATP-depe 99.3 1.6E-10 3.4E-15 160.5 30.6 134 1573-1740 751-907 (928)
263 cd00046 DEXDc DEAD-like helica 99.3 1.5E-11 3.3E-16 132.2 15.4 141 1358-1511 1-144 (144)
264 PF04851 ResIII: Type III rest 99.3 5.7E-12 1.2E-16 143.0 12.3 151 1341-1512 3-183 (184)
265 PRK12900 secA preprotein trans 99.3 6E-11 1.3E-15 155.7 23.1 109 1572-1729 596-712 (1025)
266 cd00046 DEXDc DEAD-like helica 99.3 1.7E-11 3.7E-16 131.9 14.9 140 513-670 2-144 (144)
267 PRK12326 preprotein translocas 99.3 2.4E-10 5.1E-15 146.5 26.6 127 1341-1476 78-210 (764)
268 KOG1123 RNA polymerase II tran 99.3 3.7E-11 8.1E-16 142.4 17.1 316 1339-1731 300-656 (776)
269 PF04851 ResIII: Type III rest 99.3 1.8E-11 4E-16 138.8 12.7 150 495-670 3-182 (184)
270 TIGR03117 cas_csf4 CRISPR-asso 99.3 8.2E-10 1.8E-14 143.8 29.0 72 506-586 11-85 (636)
271 cd00079 HELICc Helicase superf 99.3 2.4E-11 5.2E-16 129.7 12.1 105 732-885 27-131 (131)
272 cd00079 HELICc Helicase superf 99.3 2.1E-11 4.5E-16 130.1 11.6 113 1565-1724 19-131 (131)
273 PF00271 Helicase_C: Helicase 99.3 8.3E-12 1.8E-16 120.5 7.6 73 793-875 6-78 (78)
274 TIGR03117 cas_csf4 CRISPR-asso 99.3 1.5E-09 3.3E-14 141.3 29.6 66 1346-1415 2-70 (636)
275 TIGR02562 cas3_yersinia CRISPR 99.2 4.3E-10 9.4E-15 148.3 23.8 163 1342-1514 409-637 (1110)
276 PF00271 Helicase_C: Helicase 99.2 1.6E-11 3.5E-16 118.5 8.0 75 1630-1714 4-78 (78)
277 TIGR02562 cas3_yersinia CRISPR 99.2 1.7E-09 3.7E-14 142.8 27.3 160 497-672 410-636 (1110)
278 KOG0921 Dosage compensation co 99.2 6E-11 1.3E-15 148.9 12.6 336 504-895 386-780 (1282)
279 PRK11747 dinG ATP-dependent DN 99.2 4.7E-09 1E-13 141.6 31.7 70 488-568 19-96 (697)
280 PRK12903 secA preprotein trans 99.2 2.6E-09 5.5E-14 138.8 26.7 127 495-635 78-210 (925)
281 PRK13103 secA preprotein trans 99.2 9.8E-10 2.1E-14 144.4 22.6 127 1341-1476 82-214 (913)
282 CHL00122 secA preprotein trans 99.2 3E-09 6.5E-14 139.3 26.7 127 495-635 76-208 (870)
283 TIGR00604 rad3 DNA repair heli 99.2 4E-09 8.7E-14 143.6 29.0 72 1339-1412 8-82 (705)
284 KOG0385 Chromatin remodeling c 99.2 1.7E-09 3.8E-14 135.1 22.4 340 1340-1730 166-601 (971)
285 COG4889 Predicted helicase [Ge 99.1 1.6E-10 3.4E-15 144.3 12.5 340 492-886 158-583 (1518)
286 COG4889 Predicted helicase [Ge 99.1 1.4E-10 2.9E-15 144.8 11.9 341 1339-1725 159-585 (1518)
287 PRK12902 secA preprotein trans 99.1 6.3E-09 1.4E-13 135.8 27.5 127 495-635 85-217 (939)
288 COG1199 DinG Rad3-related DNA 99.1 2.6E-09 5.6E-14 145.5 24.1 71 493-573 13-86 (654)
289 PRK11747 dinG ATP-dependent DN 99.1 1.7E-08 3.7E-13 136.2 28.6 63 1341-1407 25-95 (697)
290 COG1199 DinG Rad3-related DNA 99.1 3E-09 6.6E-14 144.8 21.4 69 1339-1411 13-84 (654)
291 KOG0385 Chromatin remodeling c 99.1 8.9E-09 1.9E-13 128.9 23.2 327 494-891 166-601 (971)
292 KOG0390 DNA repair protein, SN 99.0 2.8E-08 6.1E-13 129.4 24.7 367 494-889 237-707 (776)
293 TIGR00604 rad3 DNA repair heli 99.0 1.2E-07 2.6E-12 129.2 30.5 75 491-573 6-83 (705)
294 PRK12903 secA preprotein trans 99.0 5.2E-08 1.1E-12 126.9 25.2 127 1341-1476 78-210 (925)
295 KOG0390 DNA repair protein, SN 99.0 9.4E-08 2E-12 124.6 26.9 369 1339-1737 236-718 (776)
296 smart00490 HELICc helicase sup 98.9 1.7E-09 3.7E-14 105.0 7.9 72 794-875 11-82 (82)
297 KOG1000 Chromatin remodeling p 98.9 2.6E-07 5.6E-12 110.8 25.9 152 493-669 196-347 (689)
298 KOG0387 Transcription-coupled 98.9 2.1E-07 4.6E-12 117.7 26.3 371 1339-1744 203-683 (923)
299 smart00490 HELICc helicase sup 98.9 3.1E-09 6.8E-14 103.1 8.1 71 1633-1713 11-81 (82)
300 PRK12902 secA preprotein trans 98.8 2.4E-07 5.2E-12 121.4 24.2 127 1341-1476 85-217 (939)
301 PF02399 Herpes_ori_bp: Origin 98.8 2.2E-07 4.7E-12 120.7 23.3 303 511-889 49-388 (824)
302 KOG1000 Chromatin remodeling p 98.8 3.1E-07 6.8E-12 110.1 22.6 355 1339-1727 196-602 (689)
303 CHL00122 secA preprotein trans 98.8 3.2E-07 7E-12 120.7 24.1 126 1342-1476 77-208 (870)
304 PF07652 Flavi_DEAD: Flaviviru 98.7 1E-07 2.3E-12 99.7 11.2 136 1357-1514 4-139 (148)
305 PF02399 Herpes_ori_bp: Origin 98.7 1.8E-06 3.9E-11 112.4 24.8 302 1357-1728 49-388 (824)
306 PRK12901 secA preprotein trans 98.6 2E-06 4.4E-11 113.9 24.0 127 495-635 169-302 (1112)
307 PF07652 Flavi_DEAD: Flaviviru 98.6 1.4E-07 3.1E-12 98.7 9.9 133 511-672 4-138 (148)
308 KOG0384 Chromodomain-helicase 98.6 7.6E-07 1.6E-11 117.5 16.9 338 474-891 354-813 (1373)
309 KOG0387 Transcription-coupled 98.6 5E-06 1.1E-10 105.7 23.3 128 493-637 203-351 (923)
310 KOG0384 Chromodomain-helicase 98.5 3.9E-06 8.5E-11 111.0 20.4 86 1633-1729 723-812 (1373)
311 COG0610 Type I site-specific r 98.5 1.5E-05 3.2E-10 110.7 27.2 342 1358-1745 274-668 (962)
312 PF00176 SNF2_N: SNF2 family N 98.5 1.2E-06 2.7E-11 107.7 14.8 157 1345-1513 1-174 (299)
313 KOG0392 SNF2 family DNA-depend 98.5 2.8E-06 6.1E-11 111.6 18.1 153 495-669 975-1137(1549)
314 PF00176 SNF2_N: SNF2 family N 98.4 8.3E-07 1.8E-11 109.2 11.2 167 499-681 1-185 (299)
315 KOG0389 SNF2 family DNA-depend 98.4 1.8E-05 3.9E-10 100.7 22.6 357 1342-1730 400-890 (941)
316 smart00488 DEXDc2 DEAD-like he 98.4 2.7E-06 5.8E-11 103.3 13.4 75 493-573 7-84 (289)
317 smart00489 DEXDc3 DEAD-like he 98.4 2.7E-06 5.8E-11 103.3 13.4 75 493-573 7-84 (289)
318 KOG0389 SNF2 family DNA-depend 98.3 1.1E-05 2.4E-10 102.5 18.4 105 795-909 802-909 (941)
319 COG5407 SEC63 Preprotein trans 98.3 3.6E-06 7.9E-11 99.7 13.1 167 1008-1201 227-397 (610)
320 smart00489 DEXDc3 DEAD-like he 98.3 3.5E-06 7.6E-11 102.3 13.4 73 1339-1412 7-83 (289)
321 smart00488 DEXDc2 DEAD-like he 98.3 3.5E-06 7.6E-11 102.3 13.4 73 1339-1412 7-83 (289)
322 COG0610 Type I site-specific r 98.2 8.4E-05 1.8E-09 103.5 24.3 137 512-669 274-412 (962)
323 PRK12901 secA preprotein trans 98.1 6.1E-05 1.3E-09 100.4 18.5 111 1360-1476 185-302 (1112)
324 PF06862 DUF1253: Protein of u 98.1 0.00081 1.8E-08 84.5 27.5 302 549-896 36-422 (442)
325 KOG1002 Nucleotide excision re 98.1 0.00011 2.4E-09 88.6 18.4 131 495-639 184-332 (791)
326 KOG0392 SNF2 family DNA-depend 98.0 0.00026 5.6E-09 94.0 19.9 100 1619-1729 1352-1455(1549)
327 PF07517 SecA_DEAD: SecA DEAD- 98.0 4.8E-05 1E-09 90.0 12.3 127 495-635 77-209 (266)
328 KOG2340 Uncharacterized conser 97.9 0.00023 4.9E-09 87.2 17.6 348 494-891 215-670 (698)
329 KOG4439 RNA polymerase II tran 97.9 0.00045 9.8E-09 87.2 19.9 161 495-669 325-500 (901)
330 KOG4439 RNA polymerase II tran 97.8 0.0018 3.8E-08 82.1 22.2 137 1341-1480 325-479 (901)
331 PF06862 DUF1253: Protein of u 97.8 0.0048 1E-07 77.8 26.3 253 1437-1737 130-424 (442)
332 PF13086 AAA_11: AAA domain; P 97.8 9.3E-05 2E-09 87.4 10.7 70 1341-1412 1-75 (236)
333 COG0653 SecA Preprotein transl 97.8 0.00058 1.3E-08 90.4 18.6 111 514-635 96-212 (822)
334 PRK15483 type III restriction- 97.8 0.00015 3.2E-09 97.9 13.3 143 1358-1513 60-240 (986)
335 PRK15483 type III restriction- 97.8 0.00026 5.7E-09 95.6 15.4 142 512-672 60-240 (986)
336 PF02562 PhoH: PhoH-like prote 97.7 0.00017 3.6E-09 82.2 10.8 148 1339-1510 2-155 (205)
337 PF07517 SecA_DEAD: SecA DEAD- 97.6 0.0004 8.6E-09 82.3 12.5 128 1341-1477 77-210 (266)
338 PF13086 AAA_11: AAA domain; P 97.6 0.00018 4E-09 84.9 9.9 75 495-572 1-75 (236)
339 TIGR00596 rad1 DNA repair prot 97.6 0.016 3.4E-07 79.1 28.7 52 1935-1991 759-810 (814)
340 KOG1802 RNA helicase nonsense 97.5 0.00027 6E-09 88.3 10.1 81 491-586 406-486 (935)
341 PF02562 PhoH: PhoH-like prote 97.5 6.8E-05 1.5E-09 85.3 3.8 60 493-562 2-61 (205)
342 KOG2340 Uncharacterized conser 97.5 0.002 4.3E-08 79.3 16.0 151 1339-1492 214-440 (698)
343 KOG1802 RNA helicase nonsense 97.5 0.00031 6.7E-09 87.9 9.4 79 1338-1426 407-485 (935)
344 PF13604 AAA_30: AAA domain; P 97.4 0.00084 1.8E-08 77.1 11.2 64 495-569 1-65 (196)
345 KOG1002 Nucleotide excision re 97.4 0.0011 2.3E-08 80.4 11.5 167 1341-1525 184-373 (791)
346 PF13604 AAA_30: AAA domain; P 97.3 0.0011 2.4E-08 76.2 10.9 64 1341-1409 1-65 (196)
347 TIGR00376 DNA helicase, putati 97.3 0.0013 2.8E-08 88.4 12.8 68 494-572 156-223 (637)
348 KOG0386 Chromatin remodeling c 97.2 0.003 6.5E-08 83.2 14.2 85 1635-1729 752-839 (1157)
349 TIGR00376 DNA helicase, putati 97.2 0.0014 3.1E-08 87.9 11.9 68 1340-1412 156-223 (637)
350 PF12340 DUF3638: Protein of u 97.2 0.0023 4.9E-08 73.5 11.2 132 1341-1477 23-185 (229)
351 KOG0386 Chromatin remodeling c 97.1 0.0051 1.1E-07 81.2 14.8 126 495-637 394-529 (1157)
352 PRK10536 hypothetical protein; 97.1 0.00076 1.7E-08 78.7 6.4 60 492-561 56-115 (262)
353 COG0553 HepA Superfamily II DN 97.1 0.022 4.8E-07 81.2 22.8 86 1634-1729 736-823 (866)
354 PF13245 AAA_19: Part of AAA d 97.1 0.0016 3.6E-08 62.2 7.5 61 503-570 2-62 (76)
355 KOG0391 SNF2 family DNA-depend 97.1 0.0035 7.6E-08 82.7 12.5 137 1341-1488 615-761 (1958)
356 PF13245 AAA_19: Part of AAA d 97.0 0.0021 4.4E-08 61.6 7.6 60 1349-1410 2-62 (76)
357 PRK10536 hypothetical protein; 97.0 0.0077 1.7E-07 70.5 13.8 143 1338-1508 56-210 (262)
358 PF13401 AAA_22: AAA domain; P 96.9 0.0053 1.1E-07 65.5 10.7 121 1356-1510 3-125 (131)
359 TIGR01447 recD exodeoxyribonuc 96.7 0.015 3.2E-07 77.3 14.9 153 1331-1508 136-293 (586)
360 PRK10875 recD exonuclease V su 96.7 0.013 2.8E-07 78.1 14.2 153 1331-1508 142-299 (615)
361 PF13872 AAA_34: P-loop contai 96.7 0.012 2.6E-07 70.0 12.1 160 495-670 37-220 (303)
362 COG0653 SecA Preprotein transl 96.6 0.076 1.6E-06 71.1 20.1 126 1344-1476 81-212 (822)
363 PF09848 DUF2075: Uncharacteri 96.6 0.0037 8.1E-08 78.7 7.9 96 1358-1478 2-97 (352)
364 PF13872 AAA_34: P-loop contai 96.5 0.032 7E-07 66.5 14.0 161 1341-1512 37-221 (303)
365 TIGR01447 recD exodeoxyribonuc 96.5 0.023 5E-07 75.6 14.0 70 498-574 148-217 (586)
366 PF13307 Helicase_C_2: Helicas 96.4 0.0039 8.5E-08 69.7 5.7 127 1573-1735 8-158 (167)
367 PF13307 Helicase_C_2: Helicas 96.4 0.0064 1.4E-07 68.0 6.8 118 733-888 9-150 (167)
368 PF00580 UvrD-helicase: UvrD/R 96.2 0.0073 1.6E-07 74.8 7.2 123 496-633 1-125 (315)
369 PF09848 DUF2075: Uncharacteri 96.2 0.01 2.3E-07 74.8 8.5 95 513-637 3-97 (352)
370 COG1875 NYN ribonuclease and A 96.2 0.018 4E-07 68.9 9.6 141 1338-1508 225-385 (436)
371 PRK12723 flagellar biosynthesi 96.2 0.051 1.1E-06 68.4 14.2 131 1357-1521 174-306 (388)
372 TIGR01448 recD_rel helicase, p 96.2 0.024 5.2E-07 77.6 12.2 63 1340-1406 322-384 (720)
373 PRK10875 recD exonuclease V su 96.2 0.046 1E-06 72.9 14.5 72 496-575 153-224 (615)
374 PRK13889 conjugal transfer rel 96.1 0.042 9.2E-07 76.4 13.6 61 495-566 346-406 (988)
375 TIGR02768 TraA_Ti Ti-type conj 96.0 0.039 8.4E-07 75.9 13.2 62 1340-1406 351-412 (744)
376 PRK06526 transposase; Provisio 96.0 0.046 9.9E-07 65.3 12.1 23 1354-1376 95-117 (254)
377 COG3421 Uncharacterized protei 96.0 0.1 2.2E-06 65.9 14.9 148 517-678 3-173 (812)
378 KOG1803 DNA helicase [Replicat 96.0 0.011 2.5E-07 74.8 6.9 67 1340-1411 184-250 (649)
379 PF00580 UvrD-helicase: UvrD/R 96.0 0.013 2.7E-07 72.8 7.5 71 1342-1416 1-71 (315)
380 TIGR02768 TraA_Ti Ti-type conj 95.9 0.054 1.2E-06 74.5 13.7 63 494-567 351-413 (744)
381 PF12340 DUF3638: Protein of u 95.9 0.034 7.5E-07 64.1 9.8 117 481-608 9-141 (229)
382 PRK13889 conjugal transfer rel 95.8 0.05 1.1E-06 75.7 12.7 124 1340-1509 345-469 (988)
383 cd00009 AAA The AAA+ (ATPases 95.8 0.064 1.4E-06 57.7 11.3 38 1357-1399 19-56 (151)
384 PRK08181 transposase; Validate 95.8 0.077 1.7E-06 63.8 12.5 60 1341-1406 87-149 (269)
385 KOG1803 DNA helicase [Replicat 95.8 0.019 4.1E-07 72.9 7.5 67 494-571 184-250 (649)
386 COG1875 NYN ribonuclease and A 95.7 0.078 1.7E-06 63.8 11.9 64 492-563 225-289 (436)
387 COG3587 Restriction endonuclea 95.7 0.031 6.7E-07 73.2 9.3 56 818-883 481-536 (985)
388 PRK12377 putative replication 95.6 0.089 1.9E-06 62.4 12.2 47 1356-1408 100-146 (248)
389 PF13401 AAA_22: AAA domain; P 95.6 0.018 3.9E-07 61.4 5.9 26 510-535 3-28 (131)
390 PF05970 PIF1: PIF1-like helic 95.6 0.044 9.6E-07 69.3 10.4 124 1341-1496 1-131 (364)
391 TIGR00596 rad1 DNA repair prot 95.6 0.23 5E-06 68.1 17.5 52 1144-1195 759-810 (814)
392 cd00009 AAA The AAA+ (ATPases 95.5 0.041 8.8E-07 59.3 8.4 21 511-531 19-39 (151)
393 PRK12723 flagellar biosynthesi 95.5 0.2 4.4E-06 63.2 15.4 132 512-681 175-307 (388)
394 KOG1132 Helicase of the DEAD s 95.5 0.05 1.1E-06 71.7 10.0 79 495-573 21-133 (945)
395 PF14520 HHH_5: Helix-hairpin- 95.4 0.019 4.1E-07 52.3 4.4 54 1934-1990 6-59 (60)
396 PF00308 Bac_DnaA: Bacterial d 95.4 0.2 4.4E-06 58.6 14.1 123 1343-1513 16-142 (219)
397 KOG1805 DNA replication helica 95.4 0.046 9.9E-07 72.6 9.1 123 1339-1477 667-809 (1100)
398 PF00448 SRP54: SRP54-type pro 95.4 0.16 3.4E-06 58.4 12.7 124 1359-1513 3-127 (196)
399 PRK12377 putative replication 95.3 0.098 2.1E-06 62.1 11.1 48 511-570 101-148 (248)
400 PRK07952 DNA replication prote 95.3 0.19 4.1E-06 59.6 13.3 60 1339-1404 74-140 (244)
401 TIGR01448 recD_rel helicase, p 95.3 0.083 1.8E-06 72.5 11.9 64 494-567 322-385 (720)
402 PF00448 SRP54: SRP54-type pro 95.2 0.17 3.7E-06 58.0 12.5 130 513-680 3-134 (196)
403 KOG1132 Helicase of the DEAD s 95.2 0.082 1.8E-06 69.9 10.5 74 1341-1415 21-134 (945)
404 PRK13826 Dtr system oriT relax 95.0 0.2 4.3E-06 70.4 14.3 124 1340-1509 380-504 (1102)
405 PF05621 TniB: Bacterial TniB 95.0 0.07 1.5E-06 63.9 8.7 123 1358-1507 62-186 (302)
406 PRK08181 transposase; Validate 95.0 0.13 2.9E-06 61.7 11.1 60 496-567 88-150 (269)
407 PRK06526 transposase; Provisio 95.0 0.13 2.7E-06 61.6 10.8 29 508-536 95-123 (254)
408 COG1419 FlhF Flagellar GTP-bin 94.9 0.68 1.5E-05 57.7 17.0 143 511-705 203-345 (407)
409 smart00492 HELICc3 helicase su 94.9 0.085 1.9E-06 57.1 8.3 89 1635-1724 23-135 (141)
410 PRK13826 Dtr system oriT relax 94.8 0.2 4.4E-06 70.3 13.6 62 494-566 380-441 (1102)
411 PF05970 PIF1: PIF1-like helic 94.8 0.063 1.4E-06 68.0 8.1 108 495-636 1-115 (364)
412 PTZ00112 origin recognition co 94.8 0.29 6.3E-06 65.5 14.0 42 513-558 782-824 (1164)
413 PRK10919 ATP-dependent DNA hel 94.8 0.052 1.1E-06 74.1 7.7 86 495-608 2-87 (672)
414 PRK11054 helD DNA helicase IV; 94.7 0.061 1.3E-06 72.9 8.1 84 494-608 195-278 (684)
415 KOG0989 Replication factor C, 94.6 0.16 3.5E-06 60.0 10.0 44 620-670 126-169 (346)
416 TIGR02782 TrbB_P P-type conjug 94.5 0.1 2.2E-06 64.1 8.6 61 1339-1402 114-174 (299)
417 PRK07952 DNA replication prote 94.5 0.44 9.5E-06 56.5 13.6 26 512-538 100-125 (244)
418 PRK13833 conjugal transfer pro 94.5 0.087 1.9E-06 64.8 8.0 62 1339-1403 126-187 (323)
419 smart00382 AAA ATPases associa 94.4 0.092 2E-06 55.9 7.3 44 1357-1405 2-45 (148)
420 PRK14722 flhF flagellar biosyn 94.4 0.29 6.2E-06 61.4 12.3 123 1355-1513 135-259 (374)
421 TIGR02881 spore_V_K stage V sp 94.4 0.17 3.7E-06 61.1 10.1 21 512-532 43-63 (261)
422 PRK14722 flhF flagellar biosyn 94.4 0.44 9.4E-06 59.8 13.8 130 508-679 134-265 (374)
423 COG3587 Restriction endonuclea 94.3 0.14 3E-06 67.4 9.3 70 1658-1737 482-562 (985)
424 PHA03333 putative ATPase subun 94.3 0.75 1.6E-05 60.6 15.7 157 496-681 170-342 (752)
425 COG1444 Predicted P-loop ATPas 94.2 0.54 1.2E-05 63.0 14.7 145 496-675 215-361 (758)
426 PTZ00112 origin recognition co 94.2 0.45 9.7E-06 63.9 13.7 38 1359-1397 782-823 (1164)
427 COG1419 FlhF Flagellar GTP-bin 94.2 0.63 1.4E-05 58.0 14.2 130 1357-1522 203-333 (407)
428 PRK11889 flhF flagellar biosyn 94.2 0.6 1.3E-05 58.2 14.0 129 1357-1521 241-371 (436)
429 PRK14087 dnaA chromosomal repl 94.1 0.31 6.7E-06 63.3 12.3 109 1358-1512 142-250 (450)
430 KOG1805 DNA replication helica 94.1 0.19 4E-06 67.2 9.9 122 493-636 667-809 (1100)
431 PRK04296 thymidine kinase; Pro 94.1 0.085 1.8E-06 60.4 6.3 35 1359-1398 4-38 (190)
432 PF03796 DnaB_C: DnaB-like hel 94.1 0.15 3.3E-06 61.5 8.8 144 1355-1510 17-179 (259)
433 PRK14974 cell division protein 94.1 0.29 6.3E-06 60.7 11.2 123 1358-1513 141-266 (336)
434 PRK11889 flhF flagellar biosyn 94.0 0.73 1.6E-05 57.5 14.3 128 512-681 242-372 (436)
435 PRK11054 helD DNA helicase IV; 94.0 0.15 3.3E-06 69.1 9.5 97 1332-1455 185-285 (684)
436 PRK08116 hypothetical protein; 94.0 0.42 9.1E-06 57.8 12.2 44 1359-1408 116-159 (268)
437 PRK14974 cell division protein 93.9 0.49 1.1E-05 58.7 12.9 122 512-672 141-266 (336)
438 COG1484 DnaC DNA replication p 93.9 0.2 4.3E-06 60.0 9.2 52 1354-1411 102-153 (254)
439 PRK10919 ATP-dependent DNA hel 93.9 0.092 2E-06 71.8 7.1 109 1341-1474 2-112 (672)
440 PRK13894 conjugal transfer ATP 93.9 0.13 2.8E-06 63.5 7.7 61 1339-1402 130-190 (319)
441 PF05621 TniB: Bacterial TniB 93.8 0.17 3.6E-06 60.8 8.2 121 512-666 62-186 (302)
442 PF05127 Helicase_RecD: Helica 93.8 0.027 5.9E-07 62.7 1.5 130 515-677 1-130 (177)
443 CHL00181 cbbX CbbX; Provisiona 93.7 0.46 9.9E-06 58.0 12.1 21 512-532 60-80 (287)
444 PRK08084 DNA replication initi 93.7 0.52 1.1E-05 55.9 12.2 52 1342-1398 28-81 (235)
445 TIGR03877 thermo_KaiC_1 KaiC d 93.7 0.33 7.2E-06 57.7 10.5 50 1356-1411 20-69 (237)
446 smart00382 AAA ATPases associa 93.6 0.081 1.8E-06 56.3 4.9 44 511-565 2-45 (148)
447 PRK11773 uvrD DNA-dependent he 93.6 0.13 2.8E-06 71.2 7.9 109 494-633 8-118 (721)
448 COG4962 CpaF Flp pilus assembl 93.6 0.2 4.3E-06 60.7 8.2 59 1339-1403 155-213 (355)
449 TIGR01547 phage_term_2 phage t 93.5 0.31 6.8E-06 62.7 10.8 137 1360-1514 4-143 (396)
450 PRK05703 flhF flagellar biosyn 93.5 0.86 1.9E-05 58.7 14.5 125 1357-1519 221-349 (424)
451 PRK08727 hypothetical protein; 93.5 0.41 8.8E-06 56.8 10.8 35 1358-1397 42-76 (233)
452 cd01124 KaiC KaiC is a circadi 93.5 0.11 2.4E-06 59.1 5.9 47 514-572 2-48 (187)
453 TIGR01075 uvrD DNA helicase II 93.5 0.13 2.8E-06 71.2 7.6 109 494-633 3-113 (715)
454 cd01120 RecA-like_NTPases RecA 93.4 0.4 8.6E-06 52.8 10.2 40 1360-1404 2-41 (165)
455 PF05876 Terminase_GpA: Phage 93.4 0.2 4.3E-06 66.8 8.8 175 1340-1530 15-200 (557)
456 PRK08116 hypothetical protein; 93.4 0.43 9.3E-06 57.7 11.0 80 478-570 71-161 (268)
457 PHA03333 putative ATPase subun 93.4 1.5 3.3E-05 57.8 16.2 144 1357-1523 187-343 (752)
458 PHA02533 17 large terminase pr 93.3 0.95 2.1E-05 59.8 14.8 71 1341-1415 59-129 (534)
459 PRK08903 DnaA regulatory inact 93.3 0.58 1.3E-05 55.2 11.7 34 497-530 25-61 (227)
460 cd01120 RecA-like_NTPases RecA 93.2 0.34 7.3E-06 53.4 9.1 39 514-563 2-40 (165)
461 PRK00149 dnaA chromosomal repl 93.2 0.4 8.7E-06 62.7 11.1 45 1358-1406 149-193 (450)
462 COG3421 Uncharacterized protei 93.2 0.16 3.4E-06 64.3 6.7 149 1363-1519 3-173 (812)
463 TIGR01074 rep ATP-dependent DN 93.2 0.18 3.9E-06 69.5 8.2 86 495-608 1-86 (664)
464 PRK04296 thymidine kinase; Pro 93.2 0.071 1.5E-06 61.0 3.6 34 514-558 5-38 (190)
465 PRK06921 hypothetical protein; 93.1 0.5 1.1E-05 57.0 11.0 45 1356-1405 116-160 (266)
466 cd01124 KaiC KaiC is a circadi 93.1 0.19 4.1E-06 57.2 7.1 47 1359-1411 1-47 (187)
467 PRK08903 DnaA regulatory inact 93.1 0.65 1.4E-05 54.8 11.8 32 1344-1375 26-60 (227)
468 PRK06893 DNA replication initi 93.1 0.65 1.4E-05 54.9 11.7 36 1358-1398 40-75 (229)
469 PRK05748 replicative DNA helic 93.1 0.4 8.8E-06 62.6 10.9 144 1355-1510 201-364 (448)
470 PRK14960 DNA polymerase III su 93.1 0.33 7.1E-06 64.2 9.7 31 501-531 24-57 (702)
471 TIGR03015 pepcterm_ATPase puta 93.0 0.28 6.2E-06 59.4 8.8 38 1339-1376 21-62 (269)
472 PF04408 HA2: Helicase associa 92.9 0.076 1.7E-06 54.1 2.9 65 975-1046 2-66 (102)
473 TIGR03420 DnaA_homol_Hda DnaA 92.8 0.66 1.4E-05 54.6 11.4 21 1356-1376 37-57 (226)
474 TIGR03420 DnaA_homol_Hda DnaA 92.8 0.43 9.4E-06 56.1 9.8 23 510-532 37-59 (226)
475 PRK11773 uvrD DNA-dependent he 92.8 0.22 4.8E-06 69.0 8.3 109 1340-1474 8-118 (721)
476 PF00308 Bac_DnaA: Bacterial d 92.8 1.2 2.6E-05 52.3 13.2 123 497-672 16-142 (219)
477 PRK05642 DNA replication initi 92.8 0.56 1.2E-05 55.6 10.6 36 1358-1398 46-81 (234)
478 PRK06835 DNA replication prote 92.8 0.5 1.1E-05 58.7 10.4 46 1356-1407 182-227 (329)
479 cd01122 GP4d_helicase GP4d_hel 92.8 0.86 1.9E-05 55.3 12.5 143 1355-1510 28-190 (271)
480 TIGR02928 orc1/cdc6 family rep 92.8 0.8 1.7E-05 58.2 12.8 25 512-537 41-65 (365)
481 PF00004 AAA: ATPase family as 92.8 0.24 5.2E-06 52.6 6.8 17 1360-1376 1-17 (132)
482 COG4962 CpaF Flp pilus assembl 92.7 0.25 5.4E-06 59.9 7.3 61 490-562 152-212 (355)
483 TIGR02881 spore_V_K stage V sp 92.7 0.52 1.1E-05 56.9 10.3 20 1358-1377 43-62 (261)
484 PRK14964 DNA polymerase III su 92.7 0.71 1.5E-05 60.0 12.0 31 502-532 23-56 (491)
485 TIGR01547 phage_term_2 phage t 92.7 0.91 2E-05 58.4 13.1 135 514-671 4-141 (396)
486 PRK05973 replicative DNA helic 92.6 0.81 1.8E-05 53.9 11.3 131 1354-1510 61-192 (237)
487 PRK08769 DNA polymerase III su 92.5 1.4 3E-05 54.5 13.6 38 494-531 3-46 (319)
488 PRK13894 conjugal transfer ATP 92.5 0.22 4.9E-06 61.4 6.9 60 494-562 131-190 (319)
489 smart00492 HELICc3 helicase su 92.5 0.38 8.3E-06 52.1 7.8 85 799-885 26-135 (141)
490 cd00984 DnaB_C DnaB helicase C 92.4 0.54 1.2E-05 56.0 9.9 140 1355-1510 11-172 (242)
491 PRK14961 DNA polymerase III su 92.4 0.98 2.1E-05 57.3 12.7 41 620-667 116-156 (363)
492 PRK12323 DNA polymerase III su 92.4 0.86 1.9E-05 60.3 12.1 40 621-667 122-161 (700)
493 TIGR01075 uvrD DNA helicase II 92.4 0.25 5.4E-06 68.4 7.9 109 1340-1474 3-113 (715)
494 TIGR02880 cbbX_cfxQ probable R 92.4 0.62 1.4E-05 56.9 10.5 18 513-530 60-77 (284)
495 PRK00411 cdc6 cell division co 92.4 0.94 2E-05 58.3 12.8 38 1357-1397 55-92 (394)
496 PRK13833 conjugal transfer pro 92.4 0.26 5.7E-06 60.6 7.2 59 495-562 128-186 (323)
497 PRK08691 DNA polymerase III su 92.3 0.56 1.2E-05 62.6 10.6 30 503-532 27-59 (709)
498 TIGR02760 TraI_TIGR conjugativ 92.3 5.6 0.00012 60.6 22.1 213 495-763 429-656 (1960)
499 TIGR00362 DnaA chromosomal rep 92.3 0.54 1.2E-05 60.7 10.4 44 1358-1405 137-180 (405)
500 COG1474 CDC6 Cdc6-related prot 92.3 0.78 1.7E-05 57.8 11.4 134 1347-1511 30-166 (366)
No 1
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=4.1e-288 Score=2643.28 Aligned_cols=1580 Identities=67% Similarity=1.070 Sum_probs=1454.2
Q ss_pred HHHhhhhhccccccccccCCCcCCCCCCCCCCCcceeecCCCCCccccccccccCCCcchhhhhccCCCCccccccCCCC
Q 000129 166 LVSIGKLITDYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDEEEEEDVAEPNASGAMQMGGGI 245 (2114)
Q Consensus 166 l~~l~k~ItDy~~~~~~~~~~~~~~~~~~d~~~gV~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (2114)
||+|+|+||||...++. .+..+..+++..||+|.|++.|++++++..+.++++.++|++...+......++-....
T Consensus 1 lV~l~k~itdy~~~~~s----k~~~d~~~~~~e~v~v~~~e~dde~~~~l~~~vkse~~ed~~~~~ee~~k~~kq~~~~~ 76 (1674)
T KOG0951|consen 1 LVKLGKLITDYELEQDS----KKVMDIGIDAAEGVEVEVEEIDDESLQDLFDMVKSELDEDDKNVKEEVAKFVKQVPAII 76 (1674)
T ss_pred CccccccceeeeecCCc----hhhhhccccccccCccccccCcchhhhHHHHHhhhhhccchhhhhhhhhhhheeccccc
Confidence 58999999999654432 12234556777899999998877776443444543332221111000011111111111
Q ss_pred CCCCCCCCcCCCCCCCcccCChHHHHHHHHhHhccCCChHHHHHHHHHHHHHHhc-CChhHHHHHHHhccCCCChhHHHH
Q 000129 246 DDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKILAE-GDDREVENKLLYHLQFDKFSLIKF 324 (2114)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 324 (2114)
+. ++..++ ....+++||++||||+|++.|. ++..+|+....+..+|+. .+++++|++|+.++.|++|.||+.
T Consensus 77 k~-el~~d~---q~t~~~dIda~~LQR~irk~ye---la~~~Qe~~~k~~~ilr~~~~~~~lE~~L~~ll~~e~~slV~~ 149 (1674)
T KOG0951|consen 77 KT-ELLIDA---QKTRESDIDAPWLQRKIRKVYE---LASRLQEKERKAAEILRTASDDGDLEPKLVVLLQFEKISLVEF 149 (1674)
T ss_pred cc-hhhhhh---hhcchhhhhHHHHHHHHHHHHh---cchhhHHHHHHHHHhHhhccCchhhhHHHHHhhhhhhhHHHHH
Confidence 11 100001 1145899999999999999999 777777777777777777 689999999999999999999999
Q ss_pred HHhchhhhHhHhhhhhcccHHHHHHHHHHHhcCCCCHHHHHHHHHHhHHHHH-HHhhhhhHhHHHHHHhhhccccCCCCC
Q 000129 325 LLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAK-ERQKNLEKSIREEARRLKDESASDGGR 403 (2114)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (2114)
|++||++|+|||+|++|..++|+..|++.|+..+..+..++.++..+..... +..+.. +.++.+ .++..
T Consensus 150 l~kNr~~i~~~t~L~~aaresE~~siEe~m~~lgp~l~d~V~~~~a~~~~~~~qeek~~-~l~~~e--~~~~~------- 219 (1674)
T KOG0951|consen 150 LRKNRLGIVWCTRLARAARESERLSIEEIMRFLGPELNDIVAKYIATRQTKSEQEEKEK-KLEKRE--ELLVS------- 219 (1674)
T ss_pred HHhhcchhhHHHHhhhhhccchhccHHHHHhhcChhhHHHHHHHHhhhcccccchhhhh-hhhccc--hhhhh-------
Confidence 9999999999999999988899999999999986336788888876543221 110110 011101 11110
Q ss_pred CCCCCccCCCCCCCcCccccccccccccccCCcccccccccCCCCCcccccCcceEEecCCCCCCCCCCCCCccccCCCC
Q 000129 404 DRRGLVDRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMP 483 (2114)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~s~~~~~~~~eei~vp~~~~~~~~~~~~l~~i~~lp 483 (2114)
.....++...+|...++++|++.++|++|++.|.+++|.+|+||++..+++|+|+|||++...||..++++..++++|
T Consensus 220 --~~~ls~td~~~v~~~~~~iDLekt~ftEGe~lm~e~~c~lP~GS~rl~kk~yeevhVPa~~~~pf~~~Ekl~~iselP 297 (1674)
T KOG0951|consen 220 --VIALSKTDVLGVLEMRPVIDLEKTCFTEGEELMQEGKCKLPQGSFRLKKKGYEEVHVPAPSYFPFHKEEKLVKISELP 297 (1674)
T ss_pred --hhhhcccccccccccCcccchhhhhhhhhhhhhccCceecCCccEEEecCCceEEeCCCCCCCCCCccceeEeecCCc
Confidence 001111223346788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhcCCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHH
Q 000129 484 EWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV 563 (2114)
Q Consensus 484 ~~~~~~f~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa 563 (2114)
+|.+++|.|..+||++|++++++++.+++|+++|||||+|||++|++.||+.+..+.+.+|..+..++|++|++|+++||
T Consensus 298 ~Wnq~aF~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLv 377 (1674)
T KOG0951|consen 298 KWNQPAFFGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALV 377 (1674)
T ss_pred chhhhhcccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888899999999999999999999
Q ss_pred HHHHHHHHHhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhH
Q 000129 564 AEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVL 643 (2114)
Q Consensus 564 ~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~l 643 (2114)
++++..|++++.++||+|.++|||.+.+.+++.+++||||||||||.++|+..++.+.+.++++||||+|++||+|||++
T Consensus 378 qE~VgsfSkRla~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvL 457 (1674)
T KOG0951|consen 378 QEMVGSFSKRLAPLGITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVL 457 (1674)
T ss_pred HHHHHHHHhhccccCcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHH
Q 000129 644 ESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLC 723 (2114)
Q Consensus 644 e~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~ 723 (2114)
|+|++|+.+..+.....+|++|||||||||+||+.||++++ .++|+|+++|||||+.|+++|+++++..+++++||+.|
T Consensus 458 ESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~-~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~ 536 (1674)
T KOG0951|consen 458 ESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDP-EGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEAC 536 (1674)
T ss_pred HHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCc-ccccccCcccCcCCccceEeccccCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCC
Q 000129 724 YEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAG 803 (2114)
Q Consensus 724 ~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHag 803 (2114)
|++++++.+++|+|||||||++|.++|+.+++.+...+++..|+++++.++++++.+++...+..|++++++|||+||||
T Consensus 537 yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAG 616 (1674)
T KOG0951|consen 537 YEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAG 616 (1674)
T ss_pred HHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEE
Q 000129 804 MTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883 (2114)
Q Consensus 804 l~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~i 883 (2114)
|++.+|..+|++|++|+++|||||.|+|||||+|+++|||+||++|||++|+|.++|+.+.+||.||||||++|+.|+++
T Consensus 617 l~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegi 696 (1674)
T KOG0951|consen 617 LNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGI 696 (1674)
T ss_pred CCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCcHHHHHHhhcCCCcccchhhHhhHHHHHHHHhhccccChHHHHHHHHhhHHHHhhccCCcccCCCcccccccch
Q 000129 884 IITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDIT 963 (2114)
Q Consensus 884 il~~~~e~~~~~~ll~~~~pies~l~~~l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~ 963 (2114)
|++.+++.++|++++++|+||||++.++|.|.|||||++| +++.+++++||+|||+|+||.+||++|+++++ ..|..
T Consensus 697 iit~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~G-v~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~--~~d~~ 773 (1674)
T KOG0951|consen 697 IITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLG-VRSARDAVDWLGYTYLYVRMVRNPTLYGVSPE--ASDRL 773 (1674)
T ss_pred eccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcc-hhhHHHHHhhhcceeeEEeeccCchhccCCcc--cchHH
Confidence 9999999999999999999999999999999999999999 99999999999999999999999999999997 34889
Q ss_pred hhhhhHHHHHHHHHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCc
Q 000129 964 LGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVT 1043 (2114)
Q Consensus 964 l~~~~~~li~~al~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~i~s~s~ef~~i~ 1043 (2114)
+++++.+++|+|+..|+++|+|.||+.+|.+++|++|+|+|+|||.+.+|..|++.|+++|++++++++|++|+||++++
T Consensus 774 le~~r~~lvhsa~~ll~~~~li~yd~~s~~~~~telg~ias~yyi~~~s~~~yn~~L~~~~~~i~lfrifs~seEfk~~s 853 (1674)
T KOG0951|consen 774 LEQRRADLVHSAATLLDKAGLIKYDRKSGAIQATELGRIASSYYITHGSMATYNELLKETMSEIDLFRIFSKSEEFKYVS 853 (1674)
T ss_pred HHHHHhhhHHHHHhhHhhcCccccccccCcccchhhccccceeeeecchHHHHHhhhhhhhccchhhhhhhhccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHHHhcccCCCCcccchHHHHHHhHHHHHHHHHHHHHHcCcHHHH
Q 000129 1044 VRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLA 1123 (2114)
Q Consensus 1044 ~r~~e~~~l~~l~~~~~~~~~~~~~~~~~K~~~llq~~i~~~~~~~~~l~~d~~~i~~~a~rl~~a~~ei~~~~~~~~~~ 1123 (2114)
||++|+.+|++|++++|||+++.+++|++|||+|||+|||+++++||+|.+||+||.|+|+|++||+|||++++||++++
T Consensus 854 vr~~ek~el~~l~~~vpIpire~l~~p~akinvllq~yiS~lk~eG~al~~dmv~i~q~agRl~Ra~fei~l~rgw~~~~ 933 (1674)
T KOG0951|consen 854 VREEEKMELAKLLERVPIPIRENLDEPSAKINVLLQSYISQLKLEGFALTSDMVYITQSAGRLFRALFEIVLKRGWAGLA 933 (1674)
T ss_pred ccHHHHHHhhhhcccCCcCchhccccchHHHHHHHHHHHhhcccccceeeeeEEEeccchHHHHHHHHHHHhhcCcchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccccCCCCccccCCCCCHHHHHHHHhCCCchhhhccCChHHhhhhhcCchhHHHHHHHHhcCCceeEEE
Q 000129 1124 EKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAA 1203 (2114)
Q Consensus 1124 ~~~~~l~~~~~~~~w~~~~~l~q~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~P~~~~~~ 1203 (2114)
..+|++|||+++|||+.++|||||+++|.++++++|++.++|.+++||++.|+++++|.|++|+.++.++++||++.+++
T Consensus 934 ~~~l~~ck~v~~r~w~~~~plrqf~~~~~ev~~~lE~k~~~~~r~~~l~~~elg~lI~~~k~G~~l~~~~~~fpk~s~~~ 1013 (1674)
T KOG0951|consen 934 QMALNLCKMVEKRMWPTQTPLRQFKGCPKEVLRRLEKKELPWGRYYDLDPAELGELIGVPKMGKPLHLFIRQFPKLSVSA 1013 (1674)
T ss_pred HHHHHhHhHhhhhcccccCchhhcCCCCHHHHHHHHhccCcchhhhccCHHHHHHHhcCcccChhHHHHHHhcccceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccCceEEEEEEEccCCccCCCCCCccccEEEEEEeCCCCeEEEEEeeeeeecccccccEEEEEeccCCCCCCeEEE
Q 000129 1204 HVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFI 1283 (2114)
Q Consensus 1204 ~~~~~~~~~l~~~l~i~~~f~~~~~~~~~~~~~wi~v~d~~~~~i~~~~~~~l~~~~~~~~~~~~f~vp~~~p~p~~y~v 1283 (2114)
++|||||+.++++|+|+|+|.||+++||..++||++|||.||++|+|+++|.++++ +|++.|++|+++| ||+|||
T Consensus 1014 ~vqpitr~~~~~~l~i~~~f~wd~~vh~~~e~F~i~ved~dge~il~~e~~~~~k~----~~~v~ft~~~~~~-pP~~fi 1088 (1674)
T KOG0951|consen 1014 HVQPITRSVYRVELTITPDFDWDDKVHGSVEPFWIIVEDTDGEKILHHEFFLLKKK----EHTVNFTVPLFEP-PPQYFI 1088 (1674)
T ss_pred eeeeeeeeEEEEEEEEeecccchhhhcccccceEEEEEccCccceeeeeeEEeccC----ceEEEEEeecCCC-CCceEE
Confidence 99999999999999999999999999999999999999999999999999999984 9999999999999 999999
Q ss_pred EEeccccccCcccccccccccCCCCCCCCCCccCCCCCCcccccChhHHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEE
Q 000129 1284 RVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVA 1363 (2114)
Q Consensus 1284 ~~vSD~wl~~e~~~~is~~~l~lp~~~~~~t~lldl~p~~~~~L~~~~~~~l~~gf~~~~~iQ~q~~~~il~~~~nvli~ 1363 (2114)
+++||+|+++++.+|+||+|+++|+++||||+++|++|+|+++|.|+.+..+|.. +||+|+|+|+.+|++++|++|+
T Consensus 1089 ~lvSd~wl~s~~~~Pvsfr~l~lpek~p~pt~lld~~~~~~~~l~N~~~~~lf~~---~n~iqtqVf~~~y~~nd~v~vg 1165 (1674)
T KOG0951|consen 1089 RLVSDRWLHSETVLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNPSFETLFQD---FNPIQTQVFTSLYNTNDNVLVG 1165 (1674)
T ss_pred EEeeccccCCCcccccchhhccCcccCCCCchhhhccccchhccCCcchhhhccc---cCCceEEEEeeeecccceEEEe
Confidence 9999999999999999999999999999999999999999999999999999874 4999999999999999999999
Q ss_pred ecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhhccCCcEEE
Q 000129 1364 APTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIII 1443 (2114)
Q Consensus 1364 ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~l~~~~IIV 1443 (2114)
||+|||||.|+++++++ . ...+ +++||+|..+.+..++..|.++|+..+|+.++.++|+.+.+.+.++.++|+|
T Consensus 1166 a~~gsgkt~~ae~a~l~---~-~~~~--~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~lkl~~~~~vii 1239 (1674)
T KOG0951|consen 1166 APNGSGKTACAELALLR---P-DTIG--RAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGETSLDLKLLQKGQVII 1239 (1674)
T ss_pred cCCCCchhHHHHHHhcC---C-ccce--EEEEecchHHHHHHHHHHHHHhhccccCceEEecCCccccchHHhhhcceEE
Confidence 99999999999999996 2 2333 9999999999999999999999999999999999999999999999999999
Q ss_pred EChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhcC
Q 000129 1444 STPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGA 1523 (2114)
Q Consensus 1444 ~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~ 1523 (2114)
+||++|+.+ + .+|.++++|.||+|++++..|+.+|++++ |++|++|+.+++|++++|.+++|++|+ +|.
T Consensus 1240 ~tpe~~d~l-q------~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~q~~k~ir~v~ls~~lana~d~---ig~ 1308 (1674)
T KOG0951|consen 1240 STPEQWDLL-Q------SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIASQLEKKIRVVALSSSLANARDL---IGA 1308 (1674)
T ss_pred echhHHHHH-h------hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHHHHHhheeEEEeehhhccchhh---ccc
Confidence 999999987 2 58899999999999999889999999999 999999999999999999999999999 999
Q ss_pred CCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCc
Q 000129 1524 TSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGD 1603 (2114)
Q Consensus 1524 ~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~ 1603 (2114)
...++|||.|+.||+|++++++++...++.+++.+|.++.|.++..+...++|++||+|+|+.|+.+|..++.++.++..
T Consensus 1309 s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~ 1388 (1674)
T KOG0951|consen 1309 SSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEP 1388 (1674)
T ss_pred cccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcH
Confidence 99999999999999999999999999999999999999999999999899999999999999999999999998876632
Q ss_pred ccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEE
Q 000129 1604 QKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVM 1683 (2114)
Q Consensus 1604 ~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~ 1683 (2114)
. ++....++ .+..+++.+.+||+ |.||+..++..+-.+|..|.|+|+|.... ++|+-..+..||+|
T Consensus 1389 ~---~l~~~~e~--------~~~~l~e~l~~gvg--~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvvm 1454 (1674)
T KOG0951|consen 1389 D---YLLSELEE--------CDETLRESLKHGVG--HEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVVM 1454 (1674)
T ss_pred H---HHHHHHhc--------chHhhhhccccccc--ccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccceEEEEe
Confidence 2 22211111 67889999999999 99999999999999999999999999999 99999999999999
Q ss_pred eeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHHHHH--------------------------
Q 000129 1684 GTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFL-------------------------- 1737 (2114)
Q Consensus 1684 gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~~~l-------------------------- 1737 (2114)
||++|||++|.+.+||+++++||+|+|.| .|+|+++|+.++++||++|+
T Consensus 1455 gt~~ydg~e~~~~~y~i~~ll~m~G~a~~-----~~k~vi~~~~~~k~yykkfl~e~lPves~lq~~lhd~~n~ei~~~t 1529 (1674)
T KOG0951|consen 1455 GTQYYDGKEHSYEDYPIAELLQMVGLASG-----AGKCVIMCHTPKKEYYKKFLYEPLPVESHLQHCLHDNFNAEIVTKT 1529 (1674)
T ss_pred cceeecccccccccCchhHHHHHhhhhcC-----CccEEEEecCchHHHHHHhccCcCchHHHHHHHHHhhhhHHHHHHH
Confidence 99999999999999999999999999988 68999999999999999999
Q ss_pred ------------------HhccCCCCccccCCCccchHHHHHHHHHHHHHHHHHCCCceecCCCccccCcccchhhhccc
Q 000129 1738 ------------------RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYI 1799 (2114)
Q Consensus 1738 ------------------Rl~~nP~~y~l~~~s~~~l~~~lselve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~i 1799 (2114)
|+..||+||++.+++++++|+++|+++++++.+|++++||++++.+. .+|+|+++||+
T Consensus 1530 ienkqd~vd~lt~s~~yrr~~~np~yy~l~~v~~~~~S~~lS~lvet~l~dl~~s~~i~v~dad~----~l~~Ias~y~i 1605 (1674)
T KOG0951|consen 1530 IENKQDAVDYLTWSFMYRRLPQNPNYYNLQGVSHRHLSDFLSELVETTLNDLEESKCIEVDDEDD----SLGMIASYYYI 1605 (1674)
T ss_pred HHhHHHHHHHHHHHHhhhccccCcceecccccchhhhhhHHHHHHHHHHHHhhcCceEEeecccc----ccchhhhhcee
Confidence 89999999999999999999999999999999999999999987655 39999999999
Q ss_pred CHhHHHHHHhhcCCCCChhhH
Q 000129 1800 SYTTIERFSSSLTPKTRMKGL 1820 (2114)
Q Consensus 1800 ~~~T~~~f~~sl~~~~~~~~i 1820 (2114)
++.|+..|..+++.+++.+++
T Consensus 1606 ~y~ti~~f~~~L~~~t~~kgl 1626 (1674)
T KOG0951|consen 1606 SYITIERFSSSLSEKTKMKGL 1626 (1674)
T ss_pred eeEeeehhhhhhhhhhhhhhh
Confidence 999999999988888777666
No 2
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=3.7e-196 Score=1808.39 Aligned_cols=1191 Identities=49% Similarity=0.809 Sum_probs=1123.9
Q ss_pred cCccccccccccccccCCcccccccccCCCCCcccccCcceEEecCCCCCCCCCCCCCccccCCCChhhHhhcCCCCCCC
Q 000129 418 LGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLN 497 (2114)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~s~~~~~~~~eei~vp~~~~~~~~~~~~l~~i~~lp~~~~~~f~g~~~l~ 497 (2114)
..+++++|--.+.+.. .-++.+.++.+|+|+.+...+.|||+.+|+..+.+ ....++++|++||+..+..|.+|++||
T Consensus 35 ~~~~~vf~~~~~~~~~-~~~~~~~k~~lp~~~~r~~~~~~eE~~~P~s~~~~-~~~~k~~~isdld~~~rk~~f~f~~fN 112 (1230)
T KOG0952|consen 35 IYYPHVFESRGLGMTD-AIFIIGIKFTLPEGSEREDYKTYEEVKIPASVPMP-MDGEKLLSISDLDDVGRKGFFSFEEFN 112 (1230)
T ss_pred ccchhHHHhhhhccch-hhhhccceEeccCCccccccCcceEEecCccCCCc-cccccceeEEecchhhhhhcccHHHHH
Confidence 4456777755444433 23456679999999999999999999999988777 666788899999999998888999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccC
Q 000129 498 RVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMY 577 (2114)
Q Consensus 498 ~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~ 577 (2114)
.+|+.|||.++++++|+|||||||||||.+|+|+||+.+.++.. .+.+..+++|+|||+||||||.|+++.|.++|.++
T Consensus 113 ~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~-~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~ 191 (1230)
T KOG0952|consen 113 RIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEE-QGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPL 191 (1230)
T ss_pred HHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhcc-ccccccCCceEEEEechHHHHHHHHHHHhhhcccc
Confidence 99999999999999999999999999999999999999998432 36677789999999999999999999999999999
Q ss_pred CcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccC-CCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhh
Q 000129 578 DVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSG-DRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIET 656 (2114)
Q Consensus 578 gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~-~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~ 656 (2114)
|++|.++|||+++.+.++..++|||+||||||+++|++. +..+++.|+||||||+|+|+|+|||++|.|++|+++.++.
T Consensus 192 gi~v~ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~ves 271 (1230)
T KOG0952|consen 192 GISVRELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVES 271 (1230)
T ss_pred cceEEEecCcchhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHh
Confidence 999999999999999989999999999999999999984 4567899999999999999999999999999999999999
Q ss_pred ccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhC-CCe
Q 000129 657 TKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAG-KHQ 735 (2114)
Q Consensus 657 ~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~ 735 (2114)
.+..+|||||||||||++|+|.||++++..++|+|+..|||+|+.+.++|.+.++.......+.+.+|+++.+... ++|
T Consensus 272 sqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~q 351 (1230)
T KOG0952|consen 272 SQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQ 351 (1230)
T ss_pred hhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcCCe
Confidence 9999999999999999999999999999999999999999999999999998886666778889999999988766 789
Q ss_pred EEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHH
Q 000129 736 VLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDL 815 (2114)
Q Consensus 736 vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~ 815 (2114)
++||||+|++|.++|+.|.+.+........|++. ..++.|+++++.|+++|||||.++||..+++.
T Consensus 352 VlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~--------------~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~ 417 (1230)
T KOG0952|consen 352 VLVFVHSRNETIRTAKKLRERAETNGEKDLFLPS--------------PRNKQLKELFQQGMGIHHAGMLRSDRQLVEKE 417 (1230)
T ss_pred EEEEEecChHHHHHHHHHHHHHHhcCcccccCCC--------------hhhHHHHHHHHhhhhhcccccchhhHHHHHHH
Confidence 9999999999999999999998777666555543 25668899999999999999999999999999
Q ss_pred HhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcHHHHH
Q 000129 816 FGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYL 895 (2114)
Q Consensus 816 F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~ 895 (2114)
|..|.++|||||+|+|||||+||+.|||+||+.||..+|++.++++.|++|++|||||||||+.|.++|+|+.+.+++|.
T Consensus 418 F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~ 497 (1230)
T KOG0952|consen 418 FKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYE 497 (1230)
T ss_pred HhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCcccchhhHhhHHHHHHHHhhccccChHHHHHHHHhhHHHHhhccCCcccCCCcccccccchhhhhhHHHHHHH
Q 000129 896 SLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTA 975 (2114)
Q Consensus 896 ~ll~~~~pies~l~~~l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~a 975 (2114)
+++.++.||||+|..+|.|||||||++|||+++++|++||+|||+|+||.+||..||+..+.+..||.++.++.+++..+
T Consensus 498 sLl~~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yTylYVRm~KNP~~Ygi~~~~l~~dp~l~s~~~~l~~~~ 577 (1230)
T KOG0952|consen 498 SLLTGQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKYTYLYVRMRKNPMAYGISYEELEPDPRLESHRRELCLVA 577 (1230)
T ss_pred HHHcCCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhceeEEEEeccChHHhhhhhhcccCCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred HHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChhHHHHHHHH
Q 000129 976 ATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKL 1055 (2114)
Q Consensus 976 l~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~i~s~s~ef~~i~~r~~e~~~l~~l 1055 (2114)
+..|.+..||.+|..++.+.+|++||+||+|||+++||+.|++..++.+++.++|+++|+|+||..|++|++|+++|++|
T Consensus 578 ~~~L~~~qmi~~D~~t~~~~stdlGR~aS~yYik~ETme~~nn~~k~~~se~~iL~lis~aeEfs~ik~R~eE~k~l~el 657 (1230)
T KOG0952|consen 578 AMELDKVQMIRFDERTGYLKSTDLGRVASNYYIKYETMETFNNLPKSFYSEDDILALISMAEEFSQIKVREEEKKELKEL 657 (1230)
T ss_pred HHHhhhhheEEEecccceEcccchhhhhhhhhhhhHHHHHHHhcccccCCHHHHHHHHHhhHhhhhhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccC-C-CCCCCCCCChhHHHHHHHHHHHhcccCCCCcccchHHHHHHhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Q 000129 1056 LDRV-P-IPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMV 1133 (2114)
Q Consensus 1056 ~~~~-~-~~~~~~~~~~~~K~~~llq~~i~~~~~~~~~l~~d~~~i~~~a~rl~~a~~ei~~~~~~~~~~~~~~~l~~~~ 1133 (2114)
++.. . +|... ...|+|+|+|+|||+..+..|+|++|..|+.|||+||.||+|+++..++|+.++.+++.|||||
T Consensus 658 ~~~~~~~~~~~~----~~gk~nil~q~~Is~~~~~~f~L~sD~~yv~qna~ri~ralf~i~~~~~~~~~~~~~l~l~k~i 733 (1230)
T KOG0952|consen 658 NEDSCEKYPFGG----EKGKVNILLQAYISRTEVKDFSLMSDSLYVAQNAGRISRALFQIVLRQNWHLLSNRMLNLCKRI 733 (1230)
T ss_pred Hhcccccccccc----cchhHHHHHHhhhhccceeeeeeccCcccccccHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 9762 2 23322 2899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccccCCCCccccCCCCCHHHHHHHHhCCCchhhhccCChHHhhhhhcCchhHHHHHHHHhcCCceeEEEEEeeccCceE
Q 000129 1134 TKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVL 1213 (2114)
Q Consensus 1134 ~~~~w~~~~~l~q~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~P~~~~~~~~~~~~~~~l 1213 (2114)
+++||...+||+||++... ++ ++++. ++.+|...++|+++.+.++| ++.++.+|.+++++.++|+|++++
T Consensus 734 er~mw~~~~~l~qf~~~~~---~~-~~~~~---~l~~L~~~~~g~~w~~~~~~---~k~l~~ip~v~v~a~~~p~t~~vl 803 (1230)
T KOG0952|consen 734 ERRMWDFFIPLKQFTLLLN---RK-ERKKL---TLLLLRKDELGELWHNVPYG---LKQLSGIPLVNVEALIQPITRNVL 803 (1230)
T ss_pred HHHHHhhhhhhhcCCcccc---hh-hhhcc---hHHhhhhhhhccccccCchh---hhhhccCCceehhhhhccchhhhh
Confidence 9999999999999998776 55 55543 78899999999999988888 889999999999999999999999
Q ss_pred EEEEEEccCCccCCCCCCccccEEEEEEeCCCCeEEEEEeeeeeecccccccEEEEEeccCCCCCCeEEEEEeccccccC
Q 000129 1214 KVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGS 1293 (2114)
Q Consensus 1214 ~~~l~i~~~f~~~~~~~~~~~~~wi~v~d~~~~~i~~~~~~~l~~~~~~~~~~~~f~vp~~~p~p~~y~v~~vSD~wl~~ 1293 (2114)
+|.+.++|+|.|++.+||++.-+ +|++|.+...|+|++.+.+.++..++.+.+.|++|+++|+|+++.++.+||.|+++
T Consensus 804 ri~~~~~~~f~w~~~~hg~~g~~-i~~ed~~~~~i~h~e~~~~~~~~~~~s~~lvf~ipis~pLps~~~~~~~s~~~l~~ 882 (1230)
T KOG0952|consen 804 RIEVAITPDFEWNDGIHGKAGQP-IFKEDSSLLPILHIEVFLVNCKKVNESQLLVFTIPISDPLPSQIRHRAVSDNWLGA 882 (1230)
T ss_pred eeeeccCCceEEecccccccCce-eEeecCCCCcceeeeeehhhhhhhhhhhheeEEeecccCCccceEEeeecccccCC
Confidence 99999999999999999997666 99999999999999999999988889999999999999999999999999999999
Q ss_pred cccccccccccCCCCCCCCCCccCCCCCCcccccChhHHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHH
Q 000129 1294 QTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTIC 1373 (2114)
Q Consensus 1294 e~~~~is~~~l~lp~~~~~~t~lldl~p~~~~~L~~~~~~~l~~gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~ 1373 (2114)
+..+++||+|+++|+..++.|++++++|+|..+|.+..++.+|+ .|+|+|++.|..+|+.+.|+++.+|||||||++
T Consensus 883 e~~~~~s~~~~il~~~~~~~t~ll~l~plp~~~L~~~~~e~~~~---~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ 959 (1230)
T KOG0952|consen 883 ETVYPLSFQHLILPDNEPPLTELLDLRPLPSSALKNVVFEALYK---YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVV 959 (1230)
T ss_pred ceeccccccceeccccccccccccccCCCcchhhccccHHHhhc---ccCCccceEEEEEeecchhhhhcCCccCcchhH
Confidence 99999999999999999999999999999999999999999987 899999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHH
Q 000129 1374 SEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALS 1453 (2114)
Q Consensus 1374 ~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~ 1453 (2114)
|++++++.+.. .+.+ +++||+|.++|+.+..++|..++... |++++.++|+...+...+..++++|+||++|+.++
T Consensus 960 ae~a~~~~~~~-~p~~--kvvyIap~kalvker~~Dw~~r~~~~-g~k~ie~tgd~~pd~~~v~~~~~~ittpek~dgi~ 1035 (1230)
T KOG0952|consen 960 AELAIFRALSY-YPGS--KVVYIAPDKALVKERSDDWSKRDELP-GIKVIELTGDVTPDVKAVREADIVITTPEKWDGIS 1035 (1230)
T ss_pred HHHHHHHHhcc-CCCc--cEEEEcCCchhhcccccchhhhcccC-CceeEeccCccCCChhheecCceEEcccccccCcc
Confidence 99999998887 4555 99999999999999999999888766 99999999999999899999999999999999999
Q ss_pred hhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCC
Q 000129 1454 RRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPP 1533 (2114)
Q Consensus 1454 r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~ 1533 (2114)
|.|..++.+++++++|+||.|++++++||++|.+++++.+++.+++.++|++++|..+.|+.|+++|++.... +||.+
T Consensus 1036 Rsw~~r~~v~~v~~iv~de~hllg~~rgPVle~ivsr~n~~s~~t~~~vr~~glsta~~na~dla~wl~~~~~--~nf~~ 1113 (1230)
T KOG0952|consen 1036 RSWQTRKYVQSVSLIVLDEIHLLGEDRGPVLEVIVSRMNYISSQTEEPVRYLGLSTALANANDLADWLNIKDM--YNFRP 1113 (1230)
T ss_pred ccccchhhhccccceeecccccccCCCcceEEEEeeccccCccccCcchhhhhHhhhhhccHHHHHHhCCCCc--CCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999886 99999
Q ss_pred CCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCc
Q 000129 1534 GVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPA 1613 (2114)
Q Consensus 1534 ~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~ 1613 (2114)
+.||+|+++++++++..+++.++..|++|++.++..+ ++.+|+|||+.+|++.+.+|..|+..+..+.++.+ |++.++
T Consensus 1114 svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~-sp~~p~lifv~srrqtrlta~~li~~~~~~~~p~~-fl~~de 1191 (1230)
T KOG0952|consen 1114 SVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTH-SPIKPVLIFVSSRRQTRLTALDLIASCATEDNPKQ-FLNMDE 1191 (1230)
T ss_pred ccccCCceEeecCCCchhcchhhhhcccHHHHHHhcC-CCCCceEEEeecccccccchHhHHhhccCCCCchh-ccCCCH
Confidence 9999999999999999999999999999999999988 99999999999999999999999999999999988 999999
Q ss_pred ccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHH
Q 000129 1614 EEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2114)
Q Consensus 1614 ~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v 1651 (2114)
.+++.+...++|..|+.++++|++.||+|+...||..+
T Consensus 1192 ~e~e~~~~~~~d~~Lk~tl~Fgi~lhhagl~~~dr~~~ 1229 (1230)
T KOG0952|consen 1192 LELEIIMSKVRDTNLKLTLPFGIGLHHAGLIENDRKIV 1229 (1230)
T ss_pred HHHHHHHHHhcccchhhhhhhhhhhhhhhccccccccC
Confidence 99999999999999999999999999999999998653
No 3
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=2.5e-88 Score=848.83 Aligned_cols=749 Identities=28% Similarity=0.484 Sum_probs=658.3
Q ss_pred hcCCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccC------CCceEEEEEcccHHHHHHHHHH
Q 000129 1336 YQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE------TGVMRAVYIAPLEALAKERYRD 1409 (2114)
Q Consensus 1336 ~~gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~------~~~~k~l~I~Ptr~La~q~~~~ 1409 (2114)
|.|...||++|+.+.++++.+++|+++|||||+|||.++.+.|++.+..+.. -+.++++||+|+++||+++...
T Consensus 304 F~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~Vgs 383 (1674)
T KOG0951|consen 304 FFGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGS 383 (1674)
T ss_pred cccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHH
Confidence 3457889999999999999999999999999999999999999999987633 2246999999999999999999
Q ss_pred HHHHhcCCCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHH
Q 000129 1410 WEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVS 1489 (2114)
Q Consensus 1410 ~~~~f~~~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~s 1489 (2114)
|.+++..+ |++|+.+||+.......+..+.|||||||+||.+.|+...+...+-++++|+||+|++.++|||.+|.++.
T Consensus 384 fSkRla~~-GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVa 462 (1674)
T KOG0951|consen 384 FSKRLAPL-GITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVA 462 (1674)
T ss_pred HHhhcccc-CcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHH
Confidence 99888875 99999999999988888999999999999999999987777788899999999999999999999999999
Q ss_pred HHHHHHhhcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHH
Q 000129 1490 RMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQ 1569 (2114)
Q Consensus 1490 rl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 1569 (2114)
|+..-........|++|||||+||..|++.|+++...++|.|.+++||+|+...+.+....+...++.+|+...|..+++
T Consensus 463 Rt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~ 542 (1674)
T KOG0951|consen 463 RTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLE 542 (1674)
T ss_pred HHHHHhhhcccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHHH
Confidence 99888777778999999999999999999999999999999999999999999999999888888899999999999999
Q ss_pred HhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCC---cccchhhHhhhhHHHHHHHhccceEeecCCCCHH
Q 000129 1570 HAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWP---AEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKT 1646 (2114)
Q Consensus 1570 ~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~---~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~ 1646 (2114)
+ ....|+||||.||+++.++|+.+...|...+...+ |+..+ .+-+........+..|++.+.+|+++||+||+..
T Consensus 543 ~-agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~-fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~ 620 (1674)
T KOG0951|consen 543 H-AGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSR-FMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRK 620 (1674)
T ss_pred h-CCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHH-HHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcc
Confidence 9 45599999999999999999999877665544444 44332 2333444667778899999999999999999999
Q ss_pred HHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEee
Q 000129 1647 DQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCH 1726 (2114)
Q Consensus 1647 dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~ 1726 (2114)
+|..++++|+.|.++|||+|.+++||||+|+++|||+||+.|++..++..+.++.+.+||.|||||+++|..|..++.+.
T Consensus 621 dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~ 700 (1674)
T KOG0951|consen 621 DRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITD 700 (1674)
T ss_pred hHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHH-------------------------------------------HhccCCCCccccCCCccch-HHHHHH
Q 000129 1727 APRKEYYKKFL-------------------------------------------RLTQNPNYYNLQGVSHRHL-SDHLSE 1762 (2114)
Q Consensus 1727 ~~~~~~~~~~l-------------------------------------------Rl~~nP~~y~l~~~s~~~l-~~~lse 1762 (2114)
.++..+|...+ |+.+||..|++........ ...-.+
T Consensus 701 ~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~Gv~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~~~d~~le~~r~~ 780 (1674)
T KOG0951|consen 701 HSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLGVRSARDAVDWLGYTYLYVRMVRNPTLYGVSPEASDRLLEQRRAD 780 (1674)
T ss_pred chHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcchhhHHHHHhhhcceeeEEeeccCchhccCCcccchHHHHHHHhh
Confidence 99988887755 8899999998875544332 333458
Q ss_pred HHHHHHHHHHHCCCceecCCC-ccccCcccchhhhcccCHhHHHHHHhhcCCCCChhhHHHHHhcCccccCCCCCcchHH
Q 000129 1763 LVENTISDLEASKCIIIEEDM-DLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEE 1841 (2114)
Q Consensus 1763 lve~~l~~L~~~~~I~~~~~~-~~~~t~lG~i~s~y~i~~~T~~~f~~sl~~~~~~~~iL~ils~a~Ef~~i~vR~~E~~ 1841 (2114)
+++++...|.++++|..+... .+.+|.+|+|+|+|||.+.+|..+.+.|++.+...+++.+++.+.||..+++|.+|+.
T Consensus 781 lvhsa~~ll~~~~li~yd~~s~~~~~telg~ias~yyi~~~s~~~yn~~L~~~~~~i~lfrifs~seEfk~~svr~~ek~ 860 (1674)
T KOG0951|consen 781 LVHSAATLLDKAGLIKYDRKSGAIQATELGRIASSYYITHGSMATYNELLKETMSEIDLFRIFSKSEEFKYVSVREEEKM 860 (1674)
T ss_pred hHHHHHhhHhhcCccccccccCcccchhhccccceeeeecchHHHHHhhhhhhhccchhhhhhhhccccccCCccHHHHH
Confidence 999999999999999987644 4999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCcccCCCCCCChHHHHHHHHHHHhcCCCCC-CCchhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 000129 1842 VVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQVG-GNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEV 1920 (2114)
Q Consensus 1842 ~l~~L~~~~p~~~~~~~~~~~~~K~~lLLqahlsr~~lp-~~l~~D~~~il~~a~rLl~a~vdi~~~~g~l~~al~~m~L 1920 (2114)
.|+++..++|++.. ..++.|..|+++|||+|+|++.+. ..|..|+.+|-..|.|+++|+.+|+..+||...+.-++.+
T Consensus 861 el~~l~~~vpIpir-e~l~~p~akinvllq~yiS~lk~eG~al~~dmv~i~q~agRl~Ra~fei~l~rgw~~~~~~~l~~ 939 (1674)
T KOG0951|consen 861 ELAKLLERVPIPIR-ENLDEPSAKINVLLQSYISQLKLEGFALTSDMVYITQSAGRLFRALFEIVLKRGWAGLAQMALNL 939 (1674)
T ss_pred HhhhhcccCCcCch-hccccchHHHHHHHHHHHhhcccccceeeeeEEEeccchHHHHHHHHHHHhhcCcchHHHHHHHh
Confidence 99999999999875 458889999999999999999998 5789999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhcCCceEEEEE
Q 000129 1921 SQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFE 2000 (2114)
Q Consensus 1921 ~q~i~Qg~w~~~s~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~~P~i~v~~~ 2000 (2114)
++|+.+.+|+...||.|.|++..+.++++..+. + ....+..+++.+...+.+. ++.+.-+..|+.+||++.+...
T Consensus 940 ck~v~~r~w~~~~plrqf~~~~~ev~~~lE~k~---~-~~~r~~~l~~~elg~lI~~-~k~G~~l~~~~~~fpk~s~~~~ 1014 (1674)
T KOG0951|consen 940 CKMVEKRMWPTQTPLRQFKGCPKEVLRRLEKKE---L-PWGRYYDLDPAELGELIGV-PKMGKPLHLFIRQFPKLSVSAH 1014 (1674)
T ss_pred HhHhhhhcccccCchhhcCCCCHHHHHHHHhcc---C-cchhhhccCHHHHHHHhcC-cccChhHHHHHHhcccceeeee
Confidence 999999999999999999999999999998876 2 3445555667777666652 2344566789999999999988
Q ss_pred EeccccccCCCcEEEEEEEEEcCCCCcccCccccCCCCCCccccEEEEEEECCCCeEEEEEEeecccccEEEEEEEecCC
Q 000129 2001 VQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAE 2080 (2114)
Q Consensus 2001 v~~~~~v~~g~~~~l~v~l~r~~~~~~~~~~v~ap~fp~~k~e~Wwlvvgd~~~~~L~~~krv~~~~~~~~~l~f~~p~~ 2080 (2114)
+.. |+ -..+.+.+.++.+.+. + ..||. -.|.+|++|.|....+++...-.-+.+. ...+.|++|-.
T Consensus 1015 vqp---it-r~~~~~~l~i~~~f~w--d-~~vh~------~~e~F~i~ved~dge~il~~e~~~~~k~-~~~v~ft~~~~ 1080 (1674)
T KOG0951|consen 1015 VQP---IT-RSVYRVELTITPDFDW--D-DKVHG------SVEPFWIIVEDTDGEKILHHEFFLLKKK-EHTVNFTVPLF 1080 (1674)
T ss_pred eee---ee-eeEEEEEEEEeecccc--h-hhhcc------cccceEEEEEccCccceeeeeeEEeccC-ceEEEEEeecC
Confidence 864 22 3456677777765532 2 24663 3478999999999989888655555444 67888999866
Q ss_pred CCceEEEEEEEecCccccCeEEEEEEE
Q 000129 2081 AGKKTYTLYFMCDSYMGCDQEYAFTVD 2107 (2114)
Q Consensus 2081 ~G~~~~~l~~~sDsY~G~D~~~~~~~~ 2107 (2114)
.|...|.+.++||-|+|.....++.|.
T Consensus 1081 ~~pP~~fi~lvSd~wl~s~~~~Pvsfr 1107 (1674)
T KOG0951|consen 1081 EPPPQYFIRLVSDRWLHSETVLPVSFR 1107 (1674)
T ss_pred CCCCceEEEEeeccccCCCcccccchh
Confidence 667789999999999999999888765
No 4
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.2e-86 Score=899.37 Aligned_cols=663 Identities=25% Similarity=0.365 Sum_probs=551.3
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
||+++.+.| .||.+|+|+|.+|++..+.+++|++++||||||||++|++|+++.+..+ .++||++|+
T Consensus 8 lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~-----------~kal~i~P~ 76 (737)
T PRK02362 8 LPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARG-----------GKALYIVPL 76 (737)
T ss_pred CCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcC-----------CcEEEEeCh
Confidence 689999988 5899999999999998777888999999999999999999999998532 389999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-C
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N 638 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~ 638 (2114)
++||.|+++.|++ +..+|++|..++|+..........++|+|+|||+|+.+.|+.. .+++++++|||||+|++.+ .
T Consensus 77 raLa~q~~~~~~~-~~~~g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~--~~l~~v~lvViDE~H~l~d~~ 153 (737)
T PRK02362 77 RALASEKFEEFER-FEELGVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGA--PWLDDITCVVVDEVHLIDSAN 153 (737)
T ss_pred HHHHHHHHHHHHH-hhcCCCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcCh--hhhhhcCEEEEECccccCCCc
Confidence 9999999999996 4556999999999987766666788999999999999998753 5788999999999999998 7
Q ss_pred CchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHH
Q 000129 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQL 718 (2114)
Q Consensus 639 rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~ 718 (2114)
||+.+|.+++++.+ ..+.+|+|+||||++|.++++.|++.. .+...+||+++...+..............
T Consensus 154 rg~~le~il~rl~~----~~~~~qii~lSATl~n~~~la~wl~~~------~~~~~~rpv~l~~~v~~~~~~~~~~~~~~ 223 (737)
T PRK02362 154 RGPTLEVTLAKLRR----LNPDLQVVALSATIGNADELADWLDAE------LVDSEWRPIDLREGVFYGGAIHFDDSQRE 223 (737)
T ss_pred chHHHHHHHHHHHh----cCCCCcEEEEcccCCCHHHHHHHhCCC------cccCCCCCCCCeeeEecCCeecccccccc
Confidence 99999999998754 356789999999999999999999864 25778899998765432111000000000
Q ss_pred hh----HHHHHHHHHH-hCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCch-hHHH---HHhhhcccCcchh
Q 000129 719 MN----DLCYEKVVAV-AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSV-SREI---LQSHTDMVKSNDL 789 (2114)
Q Consensus 719 ~~----~~~~~~i~~~-~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~-~~~~---l~~~~~~~~~~~L 789 (2114)
+. ...+..+.+. ..++++||||+||+.|+.+|..|....... +...+.. ..+. +........+..|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~L 298 (737)
T PRK02362 224 VEVPSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKT-----LTAAERAELAELAEEIREVSDTETSKDL 298 (737)
T ss_pred CCCccchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhc-----CCHHHHHHHHHHHHHHHhccCccccHHH
Confidence 00 1222223332 247899999999999999999998754211 0000000 0011 1111222346778
Q ss_pred hhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhc
Q 000129 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLG 869 (2114)
Q Consensus 790 ~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~G 869 (2114)
..++..||++|||||++.+|..+++.|++|.++|||||++++||||+|+++|||+++..||+.. ++.+++..+|+||+|
T Consensus 299 ~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~-g~~~~s~~~y~Qm~G 377 (737)
T PRK02362 299 ADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGA-GMQPIPVLEYHQMAG 377 (737)
T ss_pred HHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCC-CceeCCHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999876 468999999999999
Q ss_pred ccCCCCCCCceEEEEEcCCCc--HHHHHHhh-cCCCcccchhh--HhhHHHHHHHHhhccccChHHHHHHHHhhHHHHhh
Q 000129 870 RAGRPQYDSYGEGIIITGHSE--LRYYLSLM-NQQLPIESQFV--SKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRM 944 (2114)
Q Consensus 870 RAGR~g~d~~G~~iil~~~~e--~~~~~~ll-~~~~pies~l~--~~l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~~r~ 944 (2114)
||||+|+|..|.+|+++...+ ..+|.+++ ..+.|++|++. ..+.+++++||+.|++.+.+|+++|++|||+|++.
T Consensus 378 RAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~ 457 (737)
T PRK02362 378 RAGRPGLDPYGEAVLLAKSYDELDELFERYIWADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYATQT 457 (737)
T ss_pred cCCCCCCCCCceEEEEecCchhHHHHHHHHHhCCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHhhc
Confidence 999999999999999998752 34567776 58899999995 47999999999999999999999999999998752
Q ss_pred ccCCcccCCCcccccccchhhhhhHHHHHHHHHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHHHHhhcCCCC
Q 000129 945 LRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTM 1024 (2114)
Q Consensus 945 ~~np~~y~~~~~~~~~~~~l~~~~~~li~~al~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~ 1024 (2114)
. ..+++.++|+++++.|.++|||..+ ++.+.+|++|+++|+|||+|.|+..|.+.++...
T Consensus 458 ---~---------------~~~~l~~~v~~~l~~L~~~~~i~~~--~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~ 517 (737)
T PRK02362 458 ---D---------------DTGRLERVVDDVLDFLERNGMIEED--GETLEATELGHLVSRLYIDPLSAAEIIDGLEAAK 517 (737)
T ss_pred ---c---------------chHHHHHHHHHHHHHHHHCCCeeec--CCeEeEChHHHHHHHhcCCHHHHHHHHHHhhhcc
Confidence 0 1245678999999999999999975 3669999999999999999999999999888764
Q ss_pred --CHHHHHHHhhCCccCCCCcCChhHHHHHHHHh--------ccCCCCCCCC-CCC--hhHHHHHHHHHHHhcccC----
Q 000129 1025 --GDIELCRLFSLSEEFKYVTVRQDEKMELAKLL--------DRVPIPVKES-LEE--PSAKINVLLQAYISQLKL---- 1087 (2114)
Q Consensus 1025 --~~~~~l~i~s~s~ef~~i~~r~~e~~~l~~l~--------~~~~~~~~~~-~~~--~~~K~~~llq~~i~~~~~---- 1087 (2114)
+..++|.++|.++||..+++|++|...|.++. .++|.+.++. ++. +..|+++|||+||++.++
T Consensus 518 ~~~~~~~l~~i~~~~e~~~~~~r~~e~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~ll~~~i~~~~~~~i~ 597 (737)
T PRK02362 518 KPTDLGLLHLVCSTPDMYELYLRSGDYEWLNEYLYEHEDELLGDVPSEFEDDEFEDFLSAVKTALLLEDWIDEVDEERIT 597 (737)
T ss_pred cCchHHHHHHhhcCccccccccChhHHHHHHHHHHhcccchhccCCchhhhhhHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 78999999999999999999999999998875 4556554432 233 788999999999999995
Q ss_pred CCCcc-cchHHHHHHhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHccccCCCCccccCCCCCHHHHHHHHhCCC-ch
Q 000129 1088 EGLSL-TSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF-AW 1165 (2114)
Q Consensus 1088 ~~~~l-~~d~~~i~~~a~rl~~a~~ei~~~~~~~~~~~~~~~l~~~~~~~~w~~~~~l~q~~~~~~~~~~~l~~~~~-~~ 1165 (2114)
+.|++ .+|+..++++|.||++|+++||.. +|..++..+++|++|+.+++|++.+||.|+||++++++++|++.|+ ++
T Consensus 598 ~~~~~~~gdl~~~~~~~~~l~~a~~~i~~~-~~~~~~~~~~~l~~~l~~gv~~~~~~L~~ip~i~~~~a~~l~~~gi~s~ 676 (737)
T PRK02362 598 ERYGVGPGDIRGKVETAEWLLHAAERLASE-LDLDLARAARELEKRVEYGVREELLDLVGLRGVGRVRARRLYNAGIESR 676 (737)
T ss_pred HHhCCCchHHHHHHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHhCCCHHHHHHhCCCCCCHHHHHHHHHcCCCCH
Confidence 35777 589999999999999999999876 4557799999999999999999999999999999999999999998 67
Q ss_pred hhhccCChHHhhhhhcCchhHHHHHHHHhcC
Q 000129 1166 ERYYDLSPQELGELIRFPKMGRTLHKFVHQF 1196 (2114)
Q Consensus 1166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 1196 (2114)
+++..+++++|..++| ++.++.|.+.+..+
T Consensus 677 ~dl~~~~~~~l~~~~g-~~~~~~i~~~~~~~ 706 (737)
T PRK02362 677 ADLRAADKSVVLAILG-EKIAENILEQAGRR 706 (737)
T ss_pred HHHHhCCHHHHHHHHC-HHHHHHHHHHhCcc
Confidence 8888889999999987 67888888887744
No 5
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=4.5e-86 Score=824.07 Aligned_cols=756 Identities=28% Similarity=0.459 Sum_probs=628.5
Q ss_pred cCCCCCCCCCCccCCCCCCcccccChhHHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhh
Q 000129 1304 LILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQ 1383 (2114)
Q Consensus 1304 l~lp~~~~~~t~lldl~p~~~~~L~~~~~~~l~~gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~ 1383 (2114)
.+.|...|++ ...-.++.++.|.. .++.-|.+|.+||.+|+.||+.+|+++.|.|||||||||||.+|+|+||+.+.
T Consensus 76 ~~~P~s~~~~--~~~~k~~~isdld~-~~rk~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik 152 (1230)
T KOG0952|consen 76 VKIPASVPMP--MDGEKLLSISDLDD-VGRKGFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIK 152 (1230)
T ss_pred EecCccCCCc--cccccceeEEecch-hhhhhcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHH
Confidence 3456655555 33345566666653 45433345999999999999999999999999999999999999999999998
Q ss_pred hcc-----CCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcc
Q 000129 1384 KAS-----ETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQ 1458 (2114)
Q Consensus 1384 ~~~-----~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~ 1458 (2114)
+.. ..+.+|+|||+|++|||.++++.|.++|+.. |++|..+|||+......+..++|||+|||+||.+.|+|..
T Consensus 153 ~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~-gi~v~ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~ 231 (1230)
T KOG0952|consen 153 EHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPL-GISVRELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVG 231 (1230)
T ss_pred hhccccccccCCceEEEEechHHHHHHHHHHHhhhcccc-cceEEEecCcchhhHHHHHhcCEEEecccceeeeeeeecc
Confidence 631 2345799999999999999999999999874 9999999999988766789999999999999999999876
Q ss_pred cc-cccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhcCC-CCceeecCCCCC
Q 000129 1459 RK-YVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGAT-SHGLFNFPPGVR 1536 (2114)
Q Consensus 1459 ~~-~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~-~~~~~~f~~~~r 1536 (2114)
.. .++.|+||||||+|+|.++|||++|.+++|+.+........+||||+|||+||..|+|.||+++ ..++|.|...+|
T Consensus 232 d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yR 311 (1230)
T KOG0952|consen 232 DSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYR 311 (1230)
T ss_pred chhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeeccccc
Confidence 54 5778999999999999999999999999999988777778999999999999999999999997 578999999999
Q ss_pred ccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccc
Q 000129 1537 PVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEV 1616 (2114)
Q Consensus 1537 pv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l 1616 (2114)
|+|+...+.+............+....+..+.+.+.++.+++|||++|..+..+|+.|++.....+.... |+..
T Consensus 312 PvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~-f~~~----- 385 (1230)
T KOG0952|consen 312 PVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDL-FLPS----- 385 (1230)
T ss_pred ccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccc-cCCC-----
Confidence 9999999998887766666677788889999999999999999999999999999999887765554433 3322
Q ss_pred hhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCC
Q 000129 1617 EPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHT 1696 (2114)
Q Consensus 1617 ~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~ 1696 (2114)
-.++.+.++...|+++||+||..+||..+++.|..|.++|||||++++||+|+|+..|||+||+.||...+...
T Consensus 386 ------~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~ 459 (1230)
T KOG0952|consen 386 ------PRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFV 459 (1230)
T ss_pred ------hhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCcee
Confidence 25678899999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred CCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHHHHH---------------------------------------
Q 000129 1697 DYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFL--------------------------------------- 1737 (2114)
Q Consensus 1697 ~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~~~l--------------------------------------- 1737 (2114)
++.+.+++|+.||||||+||..|.++++++..+.+.|..++
T Consensus 460 dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~y 539 (1230)
T KOG0952|consen 460 DLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLTGQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKY 539 (1230)
T ss_pred eehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHcCCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhc
Confidence 99999999999999999999999999999999999999888
Q ss_pred -----HhccCCCCccccC---CCccchHHHHHHHHHHHHHHHHHCCCceecCCC-ccccCcccchhhhcccCHhHHHHHH
Q 000129 1738 -----RLTQNPNYYNLQG---VSHRHLSDHLSELVENTISDLEASKCIIIEEDM-DLSPSNHGMIASYYYISYTTIERFS 1808 (2114)
Q Consensus 1738 -----Rl~~nP~~y~l~~---~s~~~l~~~lselve~~l~~L~~~~~I~~~~~~-~~~~t~lG~i~s~y~i~~~T~~~f~ 1808 (2114)
|+.+||.+|++.. .....+..+..+++-.++..|.+..+|..+... .+.+|.+|++||+|||+|.||+.|.
T Consensus 540 TylYVRm~KNP~~Ygi~~~~l~~dp~l~s~~~~l~~~~~~~L~~~qmi~~D~~t~~~~stdlGR~aS~yYik~ETme~~n 619 (1230)
T KOG0952|consen 540 TYLYVRMRKNPMAYGISYEELEPDPRLESHRRELCLVAAMELDKVQMIRFDERTGYLKSTDLGRVASNYYIKYETMETFN 619 (1230)
T ss_pred eeEEEEeccChHHhhhhhhcccCCchHHHHHHHHHHHHHHHhhhhheEEEecccceEcccchhhhhhhhhhhhHHHHHHH
Confidence 9999999999864 244557788999999999999999999887644 5999999999999999999999999
Q ss_pred hhcCCCCChhhHHHHHhcCccccCCCCCcchHHHHHHHHhhCCcccCCCCCCChHHHHHHHHHHHhcCCCCC-CCchhhH
Q 000129 1809 SSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQVG-GNLKLDQ 1887 (2114)
Q Consensus 1809 ~sl~~~~~~~~iL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~p~~~~~~~~~~~~~K~~lLLqahlsr~~lp-~~l~~D~ 1887 (2114)
+..+...+..++|.++|.|.||+.+.+|++|++.|++|+...-.+.. +...+-|+++|+|+|++|-.+- ..|..|.
T Consensus 620 n~~k~~~se~~iL~lis~aeEfs~ik~R~eE~k~l~el~~~~~~~~~---~~~~~gk~nil~q~~Is~~~~~~f~L~sD~ 696 (1230)
T KOG0952|consen 620 NLPKSFYSEDDILALISMAEEFSQIKVREEEKKELKELNEDSCEKYP---FGGEKGKVNILLQAYISRTEVKDFSLMSDS 696 (1230)
T ss_pred hcccccCCHHHHHHHHHhhHhhhhhhhhhhhHHHHHHHHhccccccc---ccccchhHHHHHHhhhhccceeeeeeccCc
Confidence 98888999999999999999999999999999999999876433322 1112789999999999998876 6899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCC
Q 000129 1888 EEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEME 1967 (2114)
Q Consensus 1888 ~~il~~a~rLl~a~vdi~~~~g~l~~al~~m~L~q~i~Qg~w~~~s~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~ 1967 (2114)
..+.++|.||.+|+.++....+|..-+.+++.|++||.-.+|+...+|.|++..-. ++ .+.+ . .+..|.
T Consensus 697 ~yv~qna~ri~ralf~i~~~~~~~~~~~~~l~l~k~ier~mw~~~~~l~qf~~~~~---~~-~~~~----~---~l~~L~ 765 (1230)
T KOG0952|consen 697 LYVAQNAGRISRALFQIVLRQNWHLLSNRMLNLCKRIERRMWDFFIPLKQFTLLLN---RK-ERKK----L---TLLLLR 765 (1230)
T ss_pred ccccccHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccc---hh-hhhc----c---hHHhhh
Confidence 99999999999999999999999887788899999999999999999999998766 33 3333 1 344444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhcCCceEEEEEEeccccccCCCcEEEEEEEEEcCCCCcccCccccCCCCCCccccEEE
Q 000129 1968 DDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAKEEGWWL 2047 (2114)
Q Consensus 1968 ~~~r~~ll~~~~~~~~~i~~~~~~~P~i~v~~~v~~~~~v~~g~~~~l~v~l~r~~~~~~~~~~v~ap~fp~~k~e~Wwl 2047 (2114)
-++...+....+ ...+.+..+|.++++..+..- .-....+.|.+.++.+. .. .+|-+ . |-.+
T Consensus 766 ~~~~g~~w~~~~----~~~k~l~~ip~v~v~a~~~p~----t~~vlri~~~~~~~f~w--~~-~~hg~---~----g~~i 827 (1230)
T KOG0952|consen 766 KDELGELWHNVP----YGLKQLSGIPLVNVEALIQPI----TRNVLRIEVAITPDFEW--ND-GIHGK---A----GQPI 827 (1230)
T ss_pred hhhhccccccCc----hhhhhhccCCceehhhhhccc----hhhhheeeeccCCceEE--ec-ccccc---c----Ccee
Confidence 444444443222 127889999999887655321 11234455555553311 11 23322 1 1127
Q ss_pred EEEECCCCeEEEEEEeeccc---ccEEEEEEEecC-CCCceEEEEEEEecCccccCeEEEEEEE
Q 000129 2048 VVGDTKTNQLLAIKRVSLQR---KSRVKLDFAAPA-EAGKKTYTLYFMCDSYMGCDQEYAFTVD 2107 (2114)
Q Consensus 2048 vvgd~~~~~L~~~krv~~~~---~~~~~l~f~~p~-~~G~~~~~l~~~sDsY~G~D~~~~~~~~ 2107 (2114)
++.|...+.++.++...+.. ..+.-+.|..|- .|=.-++..+..||.|+|++..+.+.+.
T Consensus 828 ~~ed~~~~~i~h~e~~~~~~~~~~~s~~lvf~ipis~pLps~~~~~~~s~~~l~~e~~~~~s~~ 891 (1230)
T KOG0952|consen 828 FKEDSSLLPILHIEVFLVNCKKVNESQLLVFTIPISDPLPSQIRHRAVSDNWLGAETVYPLSFQ 891 (1230)
T ss_pred EeecCCCCcceeeeeehhhhhhhhhhhheeEEeecccCCccceEEeeecccccCCceecccccc
Confidence 78888888888887776542 233456666663 3445678999999999999999988754
No 6
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=6.2e-83 Score=861.21 Aligned_cols=658 Identities=26% Similarity=0.377 Sum_probs=533.7
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
+|+++.+.+ .||++|||+|.++++..+.+++|++++||||||||++|++|+++.+... +.++|||+|+
T Consensus 8 l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~----------~~~~l~l~P~ 77 (720)
T PRK00254 8 VDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE----------GGKAVYLVPL 77 (720)
T ss_pred CCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc----------CCeEEEEeCh
Confidence 578888887 6999999999999998777788999999999999999999999987642 2389999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-C
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N 638 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~ 638 (2114)
++||.|+++.|.. +..+|++|..++|+..........++|+|+|||+|+.+.+... .+++++++|||||+|++.+ .
T Consensus 78 ~aLa~q~~~~~~~-~~~~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~--~~l~~l~lvViDE~H~l~~~~ 154 (720)
T PRK00254 78 KALAEEKYREFKD-WEKLGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGS--SWIKDVKLVVADEIHLIGSYD 154 (720)
T ss_pred HHHHHHHHHHHHH-HhhcCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCc--hhhhcCCEEEEcCcCccCCcc
Confidence 9999999999987 4567999999999987766666789999999999998888643 5689999999999999987 6
Q ss_pred CchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEe-----eccCchh
Q 000129 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIG-----IQVKKPL 713 (2114)
Q Consensus 639 rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~-----~~~~~~~ 713 (2114)
||+.++.+++++ ....|+|++|||++|.++++.|++... +...+||+++...... .......
T Consensus 155 rg~~le~il~~l-------~~~~qiI~lSATl~n~~~la~wl~~~~------~~~~~rpv~l~~~~~~~~~~~~~~~~~~ 221 (720)
T PRK00254 155 RGATLEMILTHM-------LGRAQILGLSATVGNAEELAEWLNAEL------VVSDWRPVKLRKGVFYQGFLFWEDGKIE 221 (720)
T ss_pred chHHHHHHHHhc-------CcCCcEEEEEccCCCHHHHHHHhCCcc------ccCCCCCCcceeeEecCCeeeccCcchh
Confidence 999999998875 356899999999999999999998642 4667899988653221 1111111
Q ss_pred HHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCc--hhHHHHHhhhcccCcchhhh
Q 000129 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDS--VSREILQSHTDMVKSNDLKD 791 (2114)
Q Consensus 714 ~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~--~~~~~l~~~~~~~~~~~L~~ 791 (2114)
.....+...+++.+. .++++||||+||+.|+.+|..|...... ++.... ...+..........+..|++
T Consensus 222 ~~~~~~~~~~~~~i~---~~~~vLVF~~sr~~~~~~a~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 292 (720)
T PRK00254 222 RFPNSWESLVYDAVK---KGKGALVFVNTRRSAEKEALELAKKIKR------FLTKPELRALKELADSLEENPTNEKLKK 292 (720)
T ss_pred cchHHHHHHHHHHHH---hCCCEEEEEcChHHHHHHHHHHHHHHHH------hcCchhHHHHHHHHHHHhcCCCcHHHHH
Confidence 111334444444443 3679999999999999999998765321 111100 01111111122345677899
Q ss_pred hccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhccc
Q 000129 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRA 871 (2114)
Q Consensus 792 ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRA 871 (2114)
++..||++|||||++++|..+++.|++|.++|||||++++||||+|+++|||+++..|+. .++.+++..+|+||+|||
T Consensus 293 ~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~--~~~~~~~~~~~~Qm~GRA 370 (720)
T PRK00254 293 ALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSN--FGWEDIPVLEIQQMMGRA 370 (720)
T ss_pred HHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCC--CCceeCCHHHHHHhhhcc
Confidence 999999999999999999999999999999999999999999999999999999999972 346788999999999999
Q ss_pred CCCCCCCceEEEEEcCCCc-HHHHHHhh-cCCCcccchhh--HhhHHHHHHHHhhccccChHHHHHHHHhhHHHHhhccC
Q 000129 872 GRPQYDSYGEGIIITGHSE-LRYYLSLM-NQQLPIESQFV--SKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRN 947 (2114)
Q Consensus 872 GR~g~d~~G~~iil~~~~e-~~~~~~ll-~~~~pies~l~--~~l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~~r~~~n 947 (2114)
||+|+|..|.+++++...+ ..+|.+++ ..+.++.|.+. +.+.++++++|+.|++.+.+|+++||+|||+|. +|
T Consensus 371 GR~~~d~~G~~ii~~~~~~~~~~~~~~~~~~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~---~~ 447 (720)
T PRK00254 371 GRPKYDEVGEAIIVATTEEPSKLMERYIFGKPEKLFSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTFYAH---QR 447 (720)
T ss_pred CCCCcCCCceEEEEecCcchHHHHHHHHhCCchhhhccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHH---hh
Confidence 9999999999999998765 34565553 23334444443 356889999999999999999999999999995 46
Q ss_pred CcccCCCcccccccchhhhhhHHHHHHHHHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHHHHhhcCC---CC
Q 000129 948 PALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKP---TM 1024 (2114)
Q Consensus 948 p~~y~~~~~~~~~~~~l~~~~~~li~~al~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~---~~ 1024 (2114)
|.+|++ .+++++++..|.+++||..+. ++.+.+|++|+++|+|||+|.|+..|.+.++. ..
T Consensus 448 ~~~~~~---------------~~~v~~~l~~L~~~~~i~~~~-~~~~~~t~lG~~~s~~~i~~~t~~~~~~~l~~~~~~~ 511 (720)
T PRK00254 448 KDLYSL---------------EEKAKEIVYFLLENEFIDIDL-EDRFIPLPLGIRTSQLYIDPLTAKKFKDAFPKIEKNP 511 (720)
T ss_pred cChHhH---------------HHHHHHHHHHHHHCCCeEEcC-CCCEeeChHHHHHHHHhCCHHHHHHHHHHHHhhccCC
Confidence 766642 246788999999999999864 36799999999999999999999999998876 67
Q ss_pred CHHHHHHHhhCCccCCCCcCChhHHHHHHH--------HhccCCCCCCCCCCC--hhHHHHHHHHHHHhcccCC----CC
Q 000129 1025 GDIELCRLFSLSEEFKYVTVRQDEKMELAK--------LLDRVPIPVKESLEE--PSAKINVLLQAYISQLKLE----GL 1090 (2114)
Q Consensus 1025 ~~~~~l~i~s~s~ef~~i~~r~~e~~~l~~--------l~~~~~~~~~~~~~~--~~~K~~~llq~~i~~~~~~----~~ 1090 (2114)
+..++|+++|.++||..+++|++|...|.+ +..++|.+....+.. +..|+++|||+|||+.+++ .|
T Consensus 512 ~~~~~l~~~~~~~e~~~~~~r~~e~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~~~~~~ 591 (720)
T PRK00254 512 NPLGIFQLIASTPDMTPLNYSRKEMEDLLDEAYEMEDRLYFNIPYWEDYKFQKFLRAFKTAKVLLDWINEVPEGEIVETY 591 (720)
T ss_pred CHHHHHHHhhCCccccccCcchhhHHHHHHHHHhhcccccccCCcchhhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHh
Confidence 889999999999999999999999988883 333344322222233 7899999999999999873 34
Q ss_pred ccc-chHHHHHHhHHHHHHHHHHHHHHcCcH-HHHHHHHHHHHHHHccccCCCCccccCCCCCHHHHHHHHhCCC-chhh
Q 000129 1091 SLT-SDMVFITQSAGRLLRALFEIVLKRGWA-QLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF-AWER 1167 (2114)
Q Consensus 1091 ~l~-~d~~~i~~~a~rl~~a~~ei~~~~~~~-~~~~~~~~l~~~~~~~~w~~~~~l~q~~~~~~~~~~~l~~~~~-~~~~ 1167 (2114)
+.. +|+..++++|.||++|+++|+...||. .....+.+|++||.|++|++++||.|+||+|++++++|.++|+ ++++
T Consensus 592 ~~~~gd~~~~~~~~~~l~~a~~~i~~~~~~~~~~~~~l~~l~~rl~~g~~~~~~~L~~ipgig~~~~~~l~~~g~~s~~~ 671 (720)
T PRK00254 592 NIDPGDLYRILELADWLMYSLIELYKLFEPKQEVLDYLETLHLRVKHGVREELLELMRLPMIGRKRARALYNAGFRSIED 671 (720)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHcCCCHHHhhhhcCCCCCHHHHHHHHHccCCCHHH
Confidence 444 899999999999999999999977763 3334445899999999999999999999999999999999998 7888
Q ss_pred hccCChHHhhhhhcC-chhHHHHHHHHhc
Q 000129 1168 YYDLSPQELGELIRF-PKMGRTLHKFVHQ 1195 (2114)
Q Consensus 1168 ~~~~~~~~~~~~~~~-~~~~~~i~~~~~~ 1195 (2114)
+...++++|..+.|. ++.++.|++.++.
T Consensus 672 i~~a~~~el~~~~gi~~~~a~~i~~~~~~ 700 (720)
T PRK00254 672 IVNAKPSELLKVEGIGAKIVEGIFKHLGV 700 (720)
T ss_pred HHhCCHHHHhcCCCCCHHHHHHHHHHhcc
Confidence 888899999998443 5788888888773
No 7
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.5e-84 Score=852.63 Aligned_cols=738 Identities=35% Similarity=0.473 Sum_probs=620.3
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
+++.+...+ .++.++++.|+.++...+.+++|+|||||||||||++|+++|++.+.++ +.|+|||||+
T Consensus 16 ~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~----------~~k~vYivPl 85 (766)
T COG1204 16 LDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG----------GGKVVYIVPL 85 (766)
T ss_pred ccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc----------CCcEEEEeCh
Confidence 455566665 5666777767667766666689999999999999999999999999875 3489999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccC-
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDN- 638 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~- 638 (2114)
||||.|++++|+ ++..+|++|++.|||.......+..++|+|+||||||+++|+... ++..|++|||||+|+++|.
T Consensus 86 kALa~Ek~~~~~-~~~~~GirV~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~--~~~~V~lvViDEiH~l~d~~ 162 (766)
T COG1204 86 KALAEEKYEEFS-RLEELGIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPS--WIEEVDLVVIDEIHLLGDRT 162 (766)
T ss_pred HHHHHHHHHHhh-hHHhcCCEEEEecCCcccchhhhccCCEEEEchHHhhHhhhcCcc--hhhcccEEEEeeeeecCCcc
Confidence 999999999999 788899999999999999998899999999999999999999874 8999999999999999996
Q ss_pred CchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHH
Q 000129 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQL 718 (2114)
Q Consensus 639 rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~ 718 (2114)
||+++|.|++++++. ...+||||||||+||++++|.|+++++....+++.+.+++++..+.+++...... .....
T Consensus 163 RG~~lE~iv~r~~~~----~~~~rivgLSATlpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k-~~~~~ 237 (766)
T COG1204 163 RGPVLESIVARMRRL----NELIRIVGLSATLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKK-TWPLL 237 (766)
T ss_pred cCceehhHHHHHHhh----CcceEEEEEeeecCCHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccc-ccccc
Confidence 999999999999653 3458999999999999999999999987788899999999999999888775543 22223
Q ss_pred hhHHHHHHHHHHhC-CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCce
Q 000129 719 MNDLCYEKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGF 797 (2114)
Q Consensus 719 ~~~~~~~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv 797 (2114)
....++..+.++.. ++|+|||||||+.|..+|+.++........-..+.........+...+.....+..|+++++.|+
T Consensus 238 ~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~Gv 317 (766)
T COG1204 238 IDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGV 317 (766)
T ss_pred chHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCc
Confidence 34455666666555 77999999999999999999996432221111111111111222222334445688999999999
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCC
Q 000129 798 AIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD 877 (2114)
Q Consensus 798 ~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d 877 (2114)
++|||||++++|..+++.|++|.++|||||+|||||||+|+.+|||+++..|++.. ++.++++.+++||+|||||||+|
T Consensus 318 afHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~-g~~~i~~~dv~QM~GRAGRPg~d 396 (766)
T COG1204 318 AFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKG-GIVDIPVLDVLQMAGRAGRPGYD 396 (766)
T ss_pred cccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCC-CeEECchhhHhhccCcCCCCCcC
Confidence 99999999999999999999999999999999999999999999999999999954 49999999999999999999999
Q ss_pred CceEEEEEc-CCCcHHHHHHhhcCCCcccchhhHhhHHHHHHHHhhccccChHHHHHHHHhhHHHHhhccCCcccCCCcc
Q 000129 878 SYGEGIIIT-GHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPE 956 (2114)
Q Consensus 878 ~~G~~iil~-~~~e~~~~~~ll~~~~pies~l~~~l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~ 956 (2114)
..|.+++++ +..+..++.+...++.|.+ +.+.+.+..+++..++++.+..++++|+.+||+|.|++.+|..|+...
T Consensus 397 ~~G~~~i~~~~~~~~~~~~~~~~~~~~e~--~~s~l~~~~~~~~~l~~v~~~~~~v~~~~~~~f~~~t~~~~~~~~~~~- 473 (766)
T COG1204 397 DYGEAIILATSHDELEYLAELYIQSEPEP--IESKLGDELNLRTFLLGVISVGDAVSWLELTDFYERTFYNPQTYGEGM- 473 (766)
T ss_pred CCCcEEEEecCccchhHHHHHhhccCcch--HHHhhcccccchheEEEEEeccchhhHHHHHHHHHHHHhhhhhccccc-
Confidence 999999999 5566667766666666644 566666667999999999999999999999999999999999987521
Q ss_pred cccccchhhhhhHHHHHHHHHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHHHHhhcCCCC---CHHHHHHHh
Q 000129 957 VLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTM---GDIELCRLF 1033 (2114)
Q Consensus 957 ~~~~~~~l~~~~~~li~~al~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~---~~~~~l~i~ 1033 (2114)
....+..++..|.++++ ..+.....+.+|++|+.+|+|||++.|++.|.+.+.... +..+++.++
T Consensus 474 -----------~~~~i~~~~~~L~~~~~-~~~~~~~~~~ate~g~~~s~~yi~~~sa~~~~~~l~~~~~~~~~~~~l~~i 541 (766)
T COG1204 474 -----------LREEILASLRYLEENGL-ILDADWEALHATELGKLVSRLYIDPESAKIFRDLLAELALEPTEIGLLYLI 541 (766)
T ss_pred -----------hHHHHHHHHHHHHhccc-eeeccccccchhHHHHHhhhccCCHHHHHHHHHHHHHhccccchHHHhhhh
Confidence 22567889999999872 233446789999999999999999999999998776554 889999999
Q ss_pred hCCccCCCCcCChhHHHHH--HHHhccCCCCCCCCCCChhHHHHHHHHHHHhcccCCCCcccchHHHHHHhHHHHHHHHH
Q 000129 1034 SLSEEFKYVTVRQDEKMEL--AKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALF 1111 (2114)
Q Consensus 1034 s~s~ef~~i~~r~~e~~~l--~~l~~~~~~~~~~~~~~~~~K~~~llq~~i~~~~~~~~~l~~d~~~i~~~a~rl~~a~~ 1111 (2114)
|+++||..+++|.++..++ ..+.+..++...+...++..|.+.++|++.+...+.+|....|..+|.++.++...+++
T Consensus 542 s~~pd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~l~~wi~~~~~~~i~~~~~~~~~dl~ 621 (766)
T COG1204 542 SLTPDLMPIKLRERESSELVLDELEEQSDYLLGERLDELAVEYNLLLQALKTAARLLDWINEADEDEILNAYGVAPGDLL 621 (766)
T ss_pred hcCccchhhhhhhhhhhhhhHHHHHhcchHHhhccccccchhhHHHHHHHHHHHHHHHHHHhCcHHHHHHHhCcchhhHH
Confidence 9999999999999999885 55566677777777778899999999999999999989999999999999999999999
Q ss_pred HHHHHcCcHHHHHHHHHHHHHHHccccCCCCccccCCCCCHHHHHHHHhCCCchhhhccCCh-HHhhhhhcCchhHHHHH
Q 000129 1112 EIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSP-QELGELIRFPKMGRTLH 1190 (2114)
Q Consensus 1112 ei~~~~~~~~~~~~~~~l~~~~~~~~w~~~~~l~q~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~ 1190 (2114)
.++....|. .+. ++.|++++.++.|....++.|+ .++..+..+++ .|..-+++.++.. ..++. ++..+.....+
T Consensus 622 ~~~~~a~w~-~~~-~~~l~~~~~r~~~~~~~~~~~~-~~~~~~~~rie-~gv~~e~~~~l~~i~~~gr-vrar~ly~~g~ 696 (766)
T COG1204 622 RIAETAEWL-SAD-LLALGKAAERLAKILGLGLHVL-RKLEILSLRIE-YGVRSEELLELVEIRGVGR-VRARKLYNAGY 696 (766)
T ss_pred hhcchhhhh-hhh-hhhhhhhhhhhHhhhCCCcccc-ccchhhhhhhh-cCCChhhhcccccccccch-hHHHHHHHhhh
Confidence 999999999 555 9999999999999999999999 78877777775 4443256666643 33344 66677888888
Q ss_pred HHHhcCCceeEEEEEeeccCceEEEEEEEccCCccCCCCCCccccEEEEEEeCCCCeEEEEEeeeeee
Q 000129 1191 KFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKK 1258 (2114)
Q Consensus 1191 ~~~~~~P~~~~~~~~~~~~~~~l~~~l~i~~~f~~~~~~~~~~~~~wi~v~d~~~~~i~~~~~~~l~~ 1258 (2114)
+.++.+|.....+.+.|++....++.-.|.+.+.|....|+..+.||+.+.+.++..++|.+.+.+..
T Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 764 (766)
T COG1204 697 KSLEDLRLIADPAELLPLTGIGERLVEAILESLGRDVLLSGRAYFFSIEVRELDLLYVLHEEALILAG 764 (766)
T ss_pred ccHHHHHhhcChhhhhhhhhhHHHHHHHHHHHhhhhhhcccchhhhcccCccccccceecchhhccCC
Confidence 88999998888888888888777777788899999999999999999999999999999998876543
No 8
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=2.9e-81 Score=846.99 Aligned_cols=631 Identities=26% Similarity=0.366 Sum_probs=520.7
Q ss_pred hHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHH
Q 000129 1330 PLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYR 1408 (2114)
Q Consensus 1330 ~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~ 1408 (2114)
...+.+.. ||.+|+|+|++||+..+.+++|++++||||||||++|++|+++++.. ++ ++|||+|+++||.|+++
T Consensus 11 ~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~---~~--kal~i~P~raLa~q~~~ 85 (737)
T PRK02362 11 GVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR---GG--KALYIVPLRALASEKFE 85 (737)
T ss_pred HHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc---CC--cEEEEeChHHHHHHHHH
Confidence 33444433 79999999999999977778899999999999999999999999864 45 89999999999999999
Q ss_pred HHHHHhcCCCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC-CCCchHHHH
Q 000129 1409 DWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVI 1487 (2114)
Q Consensus 1409 ~~~~~f~~~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~-~~g~~le~i 1487 (2114)
+|+ +|+.. |++++.++|+...+.+.+..++|+|||||+|+.++|++ ..+++++++||+||+|++++ .+|+.+|.+
T Consensus 86 ~~~-~~~~~-g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~--~~~l~~v~lvViDE~H~l~d~~rg~~le~i 161 (737)
T PRK02362 86 EFE-RFEEL-GVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNG--APWLDDITCVVVDEVHLIDSANRGPTLEVT 161 (737)
T ss_pred HHH-HhhcC-CCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcC--hhhhhhcCEEEEECccccCCCcchHHHHHH
Confidence 999 57654 89999999998877666778899999999999999863 34689999999999999987 589999999
Q ss_pred HHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcC----HHH
Q 000129 1488 VSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMT----KPT 1563 (2114)
Q Consensus 1488 ~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~----~~~ 1563 (2114)
+++++++ ....|+|++|||++|++++++|++... +.+.+||+++...+.......+......+. ...
T Consensus 162 l~rl~~~----~~~~qii~lSATl~n~~~la~wl~~~~-----~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~ 232 (737)
T PRK02362 162 LAKLRRL----NPDLQVVALSATIGNADELADWLDAEL-----VDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDT 232 (737)
T ss_pred HHHHHhc----CCCCcEEEEcccCCCHHHHHHHhCCCc-----ccCCCCCCCCeeeEecCCeeccccccccCCCccchHH
Confidence 9999876 457899999999999999999998763 677889999987765332222221111111 344
Q ss_pred HHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhh-------hHHHHHHHhccce
Q 000129 1564 FTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNI-------QEEMLKATLRHGV 1636 (2114)
Q Consensus 1564 ~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i-------~d~~L~~~l~~gV 1636 (2114)
+..+...+..++++||||+||+.|+.+|..|...+..... ......+..+.+.+ .+..|..++..||
T Consensus 233 ~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gv 306 (737)
T PRK02362 233 LNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLT------AAERAELAELAEEIREVSDTETSKDLADCVAKGA 306 (737)
T ss_pred HHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCC------HHHHHHHHHHHHHHHhccCccccHHHHHHHHhCE
Confidence 5555555567899999999999999999999775432100 00112233333333 4567889999999
Q ss_pred EeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCC
Q 000129 1637 GYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLD 1716 (2114)
Q Consensus 1637 ~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~ 1716 (2114)
++|||||++.+|..|++.|++|.++|||||++++||||+|+++|||+||++|++.. ...|++..+|+||+|||||+|++
T Consensus 307 a~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~-g~~~~s~~~y~Qm~GRAGR~g~d 385 (737)
T PRK02362 307 AFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGA-GMQPIPVLEYHQMAGRAGRPGLD 385 (737)
T ss_pred EeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCC-CceeCCHHHHHHHhhcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999886 56899999999999999999999
Q ss_pred CceEEEEEeecC--cHHHHHHHHHhccCCCCcccc---------------C--CCc---------------cchHHHHHH
Q 000129 1717 NSGKCVILCHAP--RKEYYKKFLRLTQNPNYYNLQ---------------G--VSH---------------RHLSDHLSE 1762 (2114)
Q Consensus 1717 ~~G~~iil~~~~--~~~~~~~~lRl~~nP~~y~l~---------------~--~s~---------------~~l~~~lse 1762 (2114)
..|.|+++|.+. ..++|++++.-...|-.-.+. + .+. .+.++++++
T Consensus 386 ~~G~~ii~~~~~~~~~~~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~~~~~~l~~ 465 (737)
T PRK02362 386 PYGEAVLLAKSYDELDELFERYIWADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYATQTDDTGRLER 465 (737)
T ss_pred CCceEEEEecCchhHHHHHHHHHhCCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHhhccchHHHHH
Confidence 999999999875 345677777211111111110 0 011 123457889
Q ss_pred HHHHHHHHHHHCCCceecCCCccccCcccchhhhcccCHhHHHHHHhhcCCCC--ChhhHHHHHhcCccccCCCCCcchH
Q 000129 1763 LVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKT--RMKGLLEVLASASEYAQLPIRPGEE 1840 (2114)
Q Consensus 1763 lve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~i~~~T~~~f~~sl~~~~--~~~~iL~ils~a~Ef~~i~vR~~E~ 1840 (2114)
+|++++..|.+.|||+.++ +.+.||++|+++|+|||+|.|+..|..+|+... +..++|++||.++||..+|+|++|+
T Consensus 466 ~v~~~l~~L~~~~~i~~~~-~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~~~l~~i~~~~e~~~~~~r~~e~ 544 (737)
T PRK02362 466 VVDDVLDFLERNGMIEEDG-ETLEATELGHLVSRLYIDPLSAAEIIDGLEAAKKPTDLGLLHLVCSTPDMYELYLRSGDY 544 (737)
T ss_pred HHHHHHHHHHHCCCeeecC-CeEeEChHHHHHHHhcCCHHHHHHHHHHhhhcccCchHHHHHHhhcCccccccccChhHH
Confidence 9999999999999998753 469999999999999999999999999898765 6799999999999999999999999
Q ss_pred HHHHHHH--------hhCCcccCCCCCCC--hHHHHHHHHHHHhcCCCCCC-----Cc-hhhHHHHHHHHHHHHHHHHHH
Q 000129 1841 EVVRRLI--------HHQRFSFENPKFTD--PHVKANALLQAHFSRQQVGG-----NL-KLDQEEVLLSASRLLQAMVDV 1904 (2114)
Q Consensus 1841 ~~l~~L~--------~~~p~~~~~~~~~~--~~~K~~lLLqahlsr~~lp~-----~l-~~D~~~il~~a~rLl~a~vdi 1904 (2114)
..+.++. .++|.++....+.. |++|+++|||+||+|.+++. .+ .+|++.+++++.||++|++++
T Consensus 545 ~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~ll~~~i~~~~~~~i~~~~~~~~gdl~~~~~~~~~l~~a~~~i 624 (737)
T PRK02362 545 EWLNEYLYEHEDELLGDVPSEFEDDEFEDFLSAVKTALLLEDWIDEVDEERITERYGVGPGDIRGKVETAEWLLHAAERL 624 (737)
T ss_pred HHHHHHHHhcccchhccCCchhhhhhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHH
Confidence 9998875 45676554433443 78999999999999999762 12 789999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHH
Q 000129 1905 ISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLD 1984 (2114)
Q Consensus 1905 ~~~~g~l~~al~~m~L~q~i~Qg~w~~~s~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~ 1984 (2114)
|+. +|+..+..+|+|+|||.||+|++++||+|||||++.++++|++.| |+|++||+++++++...+ ++++..+.
T Consensus 625 ~~~-~~~~~~~~~~~l~~~l~~gv~~~~~~L~~ip~i~~~~a~~l~~~g---i~s~~dl~~~~~~~l~~~--~g~~~~~~ 698 (737)
T PRK02362 625 ASE-LDLDLARAARELEKRVEYGVREELLDLVGLRGVGRVRARRLYNAG---IESRADLRAADKSVVLAI--LGEKIAEN 698 (737)
T ss_pred HHH-hCccHHHHHHHHHHHHHhCCCHHHHHHhCCCCCCHHHHHHHHHcC---CCCHHHHHhCCHHHHHHH--HCHHHHHH
Confidence 776 556778999999999999999999999999999999999999999 999999999999999888 88888889
Q ss_pred HHHHHhcC
Q 000129 1985 IARFCNRF 1992 (2114)
Q Consensus 1985 i~~~~~~~ 1992 (2114)
|.+.+..+
T Consensus 699 i~~~~~~~ 706 (737)
T PRK02362 699 ILEQAGRR 706 (737)
T ss_pred HHHHhCcc
Confidence 99988754
No 9
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.6e-78 Score=815.95 Aligned_cols=643 Identities=24% Similarity=0.348 Sum_probs=529.4
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
||+.+.+.+ .+|+ |+++|.++++.+ .+++|++++||||||||++|++++++.+..+ .++||++|+
T Consensus 8 l~~~~~~~~~~~~~~-l~~~Q~~ai~~l-~~~~nvlv~apTGSGKTl~a~lail~~l~~~-----------~k~v~i~P~ 74 (674)
T PRK01172 8 YDDEFLNLFTGNDFE-LYDHQRMAIEQL-RKGENVIVSVPTAAGKTLIAYSAIYETFLAG-----------LKSIYIVPL 74 (674)
T ss_pred CCHHHHHHHhhCCCC-CCHHHHHHHHHH-hcCCcEEEECCCCchHHHHHHHHHHHHHHhC-----------CcEEEEech
Confidence 677777777 4565 999999999986 5567899999999999999999999887643 379999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-C
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N 638 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~ 638 (2114)
++||.|+++.|++ +...|++|...+|+..........++|+|+|||+|+.+.+++. .+++++++|||||+|++.+ .
T Consensus 75 raLa~q~~~~~~~-l~~~g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~--~~l~~v~lvViDEaH~l~d~~ 151 (674)
T PRK01172 75 RSLAMEKYEELSR-LRSLGMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDP--YIINDVGLIVADEIHIIGDED 151 (674)
T ss_pred HHHHHHHHHHHHH-HhhcCCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCCh--hHHhhcCEEEEecchhccCCC
Confidence 9999999999987 4467999999999987666666788999999999999988764 5688999999999999987 7
Q ss_pred CchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCc--hhHHH
Q 000129 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKK--PLQRF 716 (2114)
Q Consensus 639 rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~--~~~~~ 716 (2114)
||+.++.+++++.. ..++.|+|+||||++|..++++|++... +...+||+|+...+....... ...+.
T Consensus 152 rg~~le~ll~~~~~----~~~~~riI~lSATl~n~~~la~wl~~~~------~~~~~r~vpl~~~i~~~~~~~~~~~~~~ 221 (674)
T PRK01172 152 RGPTLETVLSSARY----VNPDARILALSATVSNANELAQWLNASL------IKSNFRPVPLKLGILYRKRLILDGYERS 221 (674)
T ss_pred ccHHHHHHHHHHHh----cCcCCcEEEEeCccCCHHHHHHHhCCCc------cCCCCCCCCeEEEEEecCeeeecccccc
Confidence 99999998887632 3568999999999999999999997642 567789999876543211100 00000
Q ss_pred HHhhHHHHHHHHHH-hCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccC
Q 000129 717 QLMNDLCYEKVVAV-AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPY 795 (2114)
Q Consensus 717 ~~~~~~~~~~i~~~-~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~ 795 (2114)
.. .+...+.+. ..++++||||+||+.|+.+|..|.......... . .........+..|+++++.
T Consensus 222 ~~---~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~---~---------~~~~~~~~~~~~L~~~l~~ 286 (674)
T PRK01172 222 QV---DINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDF---K---------VSSENNNVYDDSLNEMLPH 286 (674)
T ss_pred cc---cHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccc---c---------ccccccccccHHHHHHHhc
Confidence 00 012222232 347899999999999999999998754322111 0 0011123345678899999
Q ss_pred ceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCC
Q 000129 796 GFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQ 875 (2114)
Q Consensus 796 gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g 875 (2114)
||++|||||++++|..+++.|++|.++|||||++++||||+|++.|||.++..|+.. ...++|..+|.||+|||||+|
T Consensus 287 gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~~~~~~~~~--~~~~~s~~~~~Qm~GRAGR~g 364 (674)
T PRK01172 287 GVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVRDITRYGNG--GIRYLSNMEIKQMIGRAGRPG 364 (674)
T ss_pred CEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEEcCceEeCCC--CceeCCHHHHHHHhhcCCCCC
Confidence 999999999999999999999999999999999999999999999999988888753 246789999999999999999
Q ss_pred CCCceEEEEEcCCCc-HHHHHHhh-cCCCcccchhhHh--hHHHHHHHHhhccccChHHHHHHHHhhHHHHhhccCCccc
Q 000129 876 YDSYGEGIIITGHSE-LRYYLSLM-NQQLPIESQFVSK--LADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALY 951 (2114)
Q Consensus 876 ~d~~G~~iil~~~~e-~~~~~~ll-~~~~pies~l~~~--l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y 951 (2114)
+|..|.+++++...+ .+++.+++ +.+.|+||++... +..+++++|+.|.+.+.+|+++|++|||+|++ |+
T Consensus 365 ~d~~g~~~i~~~~~~~~~~~~~~l~~~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~---~~--- 438 (674)
T PRK01172 365 YDQYGIGYIYAASPASYDAAKKYLSGEPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAIQ---NG--- 438 (674)
T ss_pred CCCcceEEEEecCcccHHHHHHHHcCCCCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhc---Cc---
Confidence 999999999987654 67788877 7899999999865 44455699999999999999999999999973 21
Q ss_pred CCCcccccccchhhhhhHHHHHHHHHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHHHHhhcCCCCCHHHHHH
Q 000129 952 GLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCR 1031 (2114)
Q Consensus 952 ~~~~~~~~~~~~l~~~~~~li~~al~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~ 1031 (2114)
.+++.++|++|++.|.++|||+.+ +.+.+|++|+++|+||++|.|+..|.+.++..++...+|.
T Consensus 439 -------------~~~l~~~v~~~l~~L~~~~~i~~~---~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~l~ 502 (674)
T PRK01172 439 -------------VDEIDYYIESSLKFLKENGFIKGD---VTLRATRLGKLTSDLYIDPESALILKSAFDHDYDEDLALY 502 (674)
T ss_pred -------------hHHHHHHHHHHHHHHHHCCCcccC---CcEeECHHHHHHHHhCCCHHHHHHHHHHhhccCCHHHHHH
Confidence 124567899999999999999743 5689999999999999999999999999999999999999
Q ss_pred HhhCCccCCCCcCChhHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHHHhcccCC----CCccc-chHHHHHHhHHHH
Q 000129 1032 LFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLE----GLSLT-SDMVFITQSAGRL 1106 (2114)
Q Consensus 1032 i~s~s~ef~~i~~r~~e~~~l~~l~~~~~~~~~~~~~~~~~K~~~llq~~i~~~~~~----~~~l~-~d~~~i~~~a~rl 1106 (2114)
++|.++|| +++|..|...+.++.+++|.. ....++.|+++|||+||||.+++ .|... +|+..++++++|+
T Consensus 503 ~~~~~~e~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~k~~~ll~~~~~~~~~~~i~~~~~~~~g~l~~~~~~~~~~ 577 (674)
T PRK01172 503 YISLCREI--IPANTRDDYYAMEFLEDIGVI---DGDISAAKTAMVLRGWISEASMQKITDTYGIAPGDVQARASSADWI 577 (674)
T ss_pred HhhcCccc--cccccchHHHHHHHHHHhccc---cchhHHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 99999999 888988888888888877641 23468899999999999999973 45555 7999999999999
Q ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHccccCCCCccccCCCCCHHHHHHHHhCCC-chhhhccCChHHhhhhhcCc-h
Q 000129 1107 LRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF-AWERYYDLSPQELGELIRFP-K 1184 (2114)
Q Consensus 1107 ~~a~~ei~~~~~~~~~~~~~~~l~~~~~~~~w~~~~~l~q~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~ 1184 (2114)
.+|+..+|.. +|..++..+-.|.++|.+++|++++||.|+|||+++++++|.++|+ ++.++.+++++++.+++++. +
T Consensus 578 ~~a~~~~~~~-~~~~~~~~l~~~~~rl~~gv~~~~~~L~~ip~~~~~~a~~l~~~g~~~~~di~~~~~~~~~~i~~~~~~ 656 (674)
T PRK01172 578 SYSLARLSSI-YKPEMRRKLEILNIRIKEGIREDLIDLVLIPKVGRVRARRLYDAGFKTVDDIARSSPERIKKIYGFSDT 656 (674)
T ss_pred HHHHHHHHHH-hhHHHHHHHHHHHHHHHcCCCHHHHhhcCCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHhccCHH
Confidence 9999999976 4566777777888889999999999999999999999999999998 68888888999999998753 4
Q ss_pred hHHHHHHHHhc
Q 000129 1185 MGRTLHKFVHQ 1195 (2114)
Q Consensus 1185 ~~~~i~~~~~~ 1195 (2114)
..+.|.+.++.
T Consensus 657 ~~~~i~~~~~~ 667 (674)
T PRK01172 657 LANAIVNRAMK 667 (674)
T ss_pred HHHHHHHHHHH
Confidence 55666555443
No 10
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.7e-78 Score=818.17 Aligned_cols=618 Identities=26% Similarity=0.393 Sum_probs=499.4
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
||..|+|+|+++|+..+.+++|++++||||||||++|++|+++++.. .++ ++|||+|+++||.|++++|+ .|..
T Consensus 20 g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~--~~~--~~l~l~P~~aLa~q~~~~~~-~~~~- 93 (720)
T PRK00254 20 GIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR--EGG--KAVYLVPLKALAEEKYREFK-DWEK- 93 (720)
T ss_pred CCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh--cCC--eEEEEeChHHHHHHHHHHHH-HHhh-
Confidence 79999999999999877778899999999999999999999998875 244 99999999999999999998 4654
Q ss_pred CCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC-CCCchHHHHHHHHHHHHh
Q 000129 1418 LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIAS 1496 (2114)
Q Consensus 1418 ~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~-~~g~~le~i~srl~~i~~ 1496 (2114)
.|++|..++|+...+.+.+.+++|+|+|||+|+.++++ ...+++++++||+||+|++++ .+|+.++.+++++
T Consensus 94 ~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~--~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l----- 166 (720)
T PRK00254 94 LGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRH--GSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHM----- 166 (720)
T ss_pred cCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhC--CchhhhcCCEEEEcCcCccCCccchHHHHHHHHhc-----
Confidence 48999999999887766677889999999999999985 334689999999999999987 5799999888765
Q ss_pred hcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEE--ecccccchHHHHHhcCHHHHHHHHHHhcCC
Q 000129 1497 QVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHI--QGVDITNFEARMQAMTKPTFTAIVQHAKNE 1574 (2114)
Q Consensus 1497 ~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 1574 (2114)
....|+|++|||++|++++++|++... +.+.+||+++...+ .++........ ..........+...+..+
T Consensus 167 --~~~~qiI~lSATl~n~~~la~wl~~~~-----~~~~~rpv~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~ 238 (720)
T PRK00254 167 --LGRAQILGLSATVGNAEELAEWLNAEL-----VVSDWRPVKLRKGVFYQGFLFWEDGKI-ERFPNSWESLVYDAVKKG 238 (720)
T ss_pred --CcCCcEEEEEccCCCHHHHHHHhCCcc-----ccCCCCCCcceeeEecCCeeeccCcch-hcchHHHHHHHHHHHHhC
Confidence 346899999999999999999998763 56778999985432 22221111000 000011122233334567
Q ss_pred CCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCC-cccchhhHhh----hhHHHHHHHhccceEeecCCCCHHHHH
Q 000129 1575 KPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWP-AEEVEPFIDN----IQEEMLKATLRHGVGYLHEGLNKTDQE 1649 (2114)
Q Consensus 1575 ~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~-~~~l~~~~~~----i~d~~L~~~l~~gV~~~H~~ls~~dR~ 1649 (2114)
+++||||+||+.|+.+|..|...+.. ++... ...+..+.+. ..+..|.+++..||++|||||++++|.
T Consensus 239 ~~vLVF~~sr~~~~~~a~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~ 311 (720)
T PRK00254 239 KGALVFVNTRRSAEKEALELAKKIKR-------FLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERV 311 (720)
T ss_pred CCEEEEEcChHHHHHHHHHHHHHHHH-------hcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHH
Confidence 89999999999999999998765431 11111 1222233322 345678888999999999999999999
Q ss_pred HHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCc
Q 000129 1650 VVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1650 ~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~ 1729 (2114)
.++++|++|.++|||||++++||||+|++.+||+++++|++ ..+.++++.+|+||+|||||+|+|..|.|++++.+.+
T Consensus 312 ~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~--~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 312 LIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSN--FGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred HHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCC--CCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 99999999999999999999999999999999999999973 3456789999999999999999999999999998765
Q ss_pred -HHHHHHHHH-----hccCCCC-ccc----------cC-CCccchH---------------HHHHHHHHHHHHHHHHCCC
Q 000129 1730 -KEYYKKFLR-----LTQNPNY-YNL----------QG-VSHRHLS---------------DHLSELVENTISDLEASKC 1776 (2114)
Q Consensus 1730 -~~~~~~~lR-----l~~nP~~-y~l----------~~-~s~~~l~---------------~~lselve~~l~~L~~~~~ 1776 (2114)
+++|++|+. +...++. ..+ .. .+.+.+. ..+.+++++++..|.+++|
T Consensus 390 ~~~~~~~~~~~~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~~~~~~~~~~~~v~~~l~~L~~~~~ 469 (720)
T PRK00254 390 PSKLMERYIFGKPEKLFSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTFYAHQRKDLYSLEEKAKEIVYFLLENEF 469 (720)
T ss_pred hHHHHHHHHhCCchhhhccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHHhhcChHhHHHHHHHHHHHHHHCCC
Confidence 566777752 1111100 000 00 0111111 1245689999999999999
Q ss_pred ceecCCCccccCcccchhhhcccCHhHHHHHHhhcCC---CCChhhHHHHHhcCccccCCCCCcchHHHHHHH-------
Q 000129 1777 IIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTP---KTRMKGLLEVLASASEYAQLPIRPGEEEVVRRL------- 1846 (2114)
Q Consensus 1777 I~~~~~~~~~~t~lG~i~s~y~i~~~T~~~f~~sl~~---~~~~~~iL~ils~a~Ef~~i~vR~~E~~~l~~L------- 1846 (2114)
|+.++++.+.||++|+++|+|||+|.|+..|.++++. +++..++|++||.|+||..+|+|++|+..+.++
T Consensus 470 i~~~~~~~~~~t~lG~~~s~~~i~~~t~~~~~~~l~~~~~~~~~~~~l~~~~~~~e~~~~~~r~~e~~~l~~~~~~~~~~ 549 (720)
T PRK00254 470 IDIDLEDRFIPLPLGIRTSQLYIDPLTAKKFKDAFPKIEKNPNPLGIFQLIASTPDMTPLNYSRKEMEDLLDEAYEMEDR 549 (720)
T ss_pred eEEcCCCCEeeChHHHHHHHHhCCHHHHHHHHHHHHhhccCCCHHHHHHHhhCCccccccCcchhhHHHHHHHHHhhccc
Confidence 9998777899999999999999999999999988876 678999999999999999999999999888843
Q ss_pred -HhhCCcccCCCCCCC--hHHHHHHHHHHHhcCCCCCCCc------hhhHHHHHHHHHHHHHHHHHHHHhc----CCHHH
Q 000129 1847 -IHHQRFSFENPKFTD--PHVKANALLQAHFSRQQVGGNL------KLDQEEVLLSASRLLQAMVDVISSN----GWLSL 1913 (2114)
Q Consensus 1847 -~~~~p~~~~~~~~~~--~~~K~~lLLqahlsr~~lp~~l------~~D~~~il~~a~rLl~a~vdi~~~~----g~l~~ 1913 (2114)
..++|++.+. .+.+ |++|+++|||+||+|.+++.++ ++|++.+++++.||++||+|+++.. +|++
T Consensus 550 l~~~~~~~~~~-~~~~~~~~~k~~~ll~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~l~~a~~~i~~~~~~~~~~~~- 627 (720)
T PRK00254 550 LYFNIPYWEDY-KFQKFLRAFKTAKVLLDWINEVPEGEIVETYNIDPGDLYRILELADWLMYSLIELYKLFEPKQEVLD- 627 (720)
T ss_pred ccccCCcchhh-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHH-
Confidence 3444543321 2333 7899999999999999998766 8999999999999999999999944 4554
Q ss_pred HHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhcC
Q 000129 1914 ALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRF 1992 (2114)
Q Consensus 1914 al~~m~L~q~i~Qg~w~~~s~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~~ 1992 (2114)
++. +|+|||+||+|+++++|.||||||+.++++|.++| ++|++|++++++++..++.+++++..+.|.++++.+
T Consensus 628 ~l~--~l~~rl~~g~~~~~~~L~~ipgig~~~~~~l~~~g---~~s~~~i~~a~~~el~~~~gi~~~~a~~i~~~~~~~ 701 (720)
T PRK00254 628 YLE--TLHLRVKHGVREELLELMRLPMIGRKRARALYNAG---FRSIEDIVNAKPSELLKVEGIGAKIVEGIFKHLGVE 701 (720)
T ss_pred HHH--HHHHHHHcCCCHHHhhhhcCCCCCHHHHHHHHHcc---CCCHHHHHhCCHHHHhcCCCCCHHHHHHHHHHhccc
Confidence 444 89999999999999999999999999999999999 999999999999999999899999999999998844
No 11
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=8.2e-75 Score=780.04 Aligned_cols=602 Identities=25% Similarity=0.358 Sum_probs=484.9
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
+|. ++|+|.++++.+.+ ++|++++||||||||++|++++++.+.. ++ ++||++|+++||.|++++|++ +..
T Consensus 20 ~~~-l~~~Q~~ai~~l~~-~~nvlv~apTGSGKTl~a~lail~~l~~---~~--k~v~i~P~raLa~q~~~~~~~-l~~- 90 (674)
T PRK01172 20 DFE-LYDHQRMAIEQLRK-GENVIVSVPTAAGKTLIAYSAIYETFLA---GL--KSIYIVPLRSLAMEKYEELSR-LRS- 90 (674)
T ss_pred CCC-CCHHHHHHHHHHhc-CCcEEEECCCCchHHHHHHHHHHHHHHh---CC--cEEEEechHHHHHHHHHHHHH-Hhh-
Confidence 465 99999999999854 6789999999999999999999998875 44 899999999999999999984 654
Q ss_pred CCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC-CCCchHHHHHHHHHHHHh
Q 000129 1418 LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIAS 1496 (2114)
Q Consensus 1418 ~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~-~~g~~le~i~srl~~i~~ 1496 (2114)
.|.+|...+|+...+...+..++|+|+|||+|+.++++|. ..++++++||+||+|++++ .+|+.++.++++++++
T Consensus 91 ~g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~--~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~-- 166 (674)
T PRK01172 91 LGMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDP--YIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYV-- 166 (674)
T ss_pred cCCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCCh--hHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhc--
Confidence 4889999999987766667788999999999999998854 4589999999999999986 5799999999988876
Q ss_pred hcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCC
Q 000129 1497 QVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKP 1576 (2114)
Q Consensus 1497 ~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 1576 (2114)
+.+.|+|++|||++|+.++++|++... +.+.+||+|+...+........... ..........+......+++
T Consensus 167 --~~~~riI~lSATl~n~~~la~wl~~~~-----~~~~~r~vpl~~~i~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~ 238 (674)
T PRK01172 167 --NPDARILALSATVSNANELAQWLNASL-----IKSNFRPVPLKLGILYRKRLILDGY-ERSQVDINSLIKETVNDGGQ 238 (674)
T ss_pred --CcCCcEEEEeCccCCHHHHHHHhCCCc-----cCCCCCCCCeEEEEEecCeeeeccc-ccccccHHHHHHHHHhCCCc
Confidence 457999999999999999999998764 6678899999876643321111000 00011123334444467889
Q ss_pred EEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHh
Q 000129 1577 ALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFE 1656 (2114)
Q Consensus 1577 ~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~ 1656 (2114)
+||||+|+++|+.+|..|...+..... +.. ... .....+..+.+++.+||++|||||++++|..+++.|+
T Consensus 239 vLVF~~sr~~~~~~a~~L~~~~~~~~~----~~~-~~~-----~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~ 308 (674)
T PRK01172 239 VLVFVSSRKNAEDYAEMLIQHFPEFND----FKV-SSE-----NNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFR 308 (674)
T ss_pred EEEEeccHHHHHHHHHHHHHhhhhccc----ccc-ccc-----ccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHH
Confidence 999999999999999999776542211 100 000 1223456788889999999999999999999999999
Q ss_pred cCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCc-HHHHHH
Q 000129 1657 AGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR-KEYYKK 1735 (2114)
Q Consensus 1657 ~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~-~~~~~~ 1735 (2114)
+|.++|||||++++||+|+|+..|||+++++|++.. ..++|+.+|.||+|||||+|++..|.+++++.+.+ .+++++
T Consensus 309 ~g~i~VLvaT~~la~Gvnipa~~VII~~~~~~~~~~--~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~ 386 (674)
T PRK01172 309 NRYIKVIVATPTLAAGVNLPARLVIVRDITRYGNGG--IRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKK 386 (674)
T ss_pred cCCCeEEEecchhhccCCCcceEEEEcCceEeCCCC--ceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHH
Confidence 999999999999999999999999999999998763 35789999999999999999999999999988765 577888
Q ss_pred HHHhccCCCCcccc---------------C--CCccch--------------HHHHHHHHHHHHHHHHHCCCceecCCCc
Q 000129 1736 FLRLTQNPNYYNLQ---------------G--VSHRHL--------------SDHLSELVENTISDLEASKCIIIEEDMD 1784 (2114)
Q Consensus 1736 ~lRl~~nP~~y~l~---------------~--~s~~~l--------------~~~lselve~~l~~L~~~~~I~~~~~~~ 1784 (2114)
++.-...|-.-.+. + .+.+++ ++++++.|+++++.|.+.|||+. ++.
T Consensus 387 ~l~~~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~~~~~~l~~~v~~~l~~L~~~~~i~~--~~~ 464 (674)
T PRK01172 387 YLSGEPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAIQNGVDEIDYYIESSLKFLKENGFIKG--DVT 464 (674)
T ss_pred HHcCCCCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhcCchHHHHHHHHHHHHHHHHCCCccc--CCc
Confidence 87322111000000 0 011111 34678899999999999999963 346
Q ss_pred cccCcccchhhhcccCHhHHHHHHhhcCCCCChhhHHHHHhcCccccCCCCCcchHHHHHHHHhhCCcccCCCCCCChHH
Q 000129 1785 LSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHV 1864 (2114)
Q Consensus 1785 ~~~t~lG~i~s~y~i~~~T~~~f~~sl~~~~~~~~iL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~p~~~~~~~~~~~~~ 1864 (2114)
+.||++|+++|+||++|.|+..|..+++..++..++|++||.|+|| +|+|++|+..+.++..++|.. ....|++
T Consensus 465 ~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~l~~~~~~~e~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 538 (674)
T PRK01172 465 LRATRLGKLTSDLYIDPESALILKSAFDHDYDEDLALYYISLCREI--IPANTRDDYYAMEFLEDIGVI----DGDISAA 538 (674)
T ss_pred EeECHHHHHHHHhCCCHHHHHHHHHHhhccCCHHHHHHHhhcCccc--cccccchHHHHHHHHHHhccc----cchhHHH
Confidence 9999999999999999999999999999999999999999999999 999999999998888887651 3445899
Q ss_pred HHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH------HHHHHH-------HHhccCCC
Q 000129 1865 KANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLA------MEVSQM-------VTQGMWER 1931 (2114)
Q Consensus 1865 K~~lLLqahlsr~~lp~~l~~D~~~il~~a~rLl~a~vdi~~~~g~l~~al~~------m~L~q~-------i~Qg~w~~ 1931 (2114)
|+++|||||++|.+++. +..++..++.+++++ +++.+|+.+++.+ |+++|| |+||+|++
T Consensus 539 k~~~ll~~~~~~~~~~~-----i~~~~~~~~g~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~l~~~~~rl~~gv~~~ 610 (674)
T PRK01172 539 KTAMVLRGWISEASMQK-----ITDTYGIAPGDVQAR---ASSADWISYSLARLSSIYKPEMRRKLEILNIRIKEGIRED 610 (674)
T ss_pred HHHHHHHHHHcCCCHHH-----HHHHhCCChHHHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHH
Confidence 99999999999999873 333444444444444 2334444444443 666666 99999999
Q ss_pred CCccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhc
Q 000129 1932 DSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNR 1991 (2114)
Q Consensus 1932 ~s~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~ 1991 (2114)
++||+|||||++.++++|+++| ++|++||++++++++.+++++++++++.|.+.++.
T Consensus 611 ~~~L~~ip~~~~~~a~~l~~~g---~~~~~di~~~~~~~~~~i~~~~~~~~~~i~~~~~~ 667 (674)
T PRK01172 611 LIDLVLIPKVGRVRARRLYDAG---FKTVDDIARSSPERIKKIYGFSDTLANAIVNRAMK 667 (674)
T ss_pred HHhhcCCCCCCHHHHHHHHHcC---CCCHHHHHhCCHHHHHHHhccCHHHHHHHHHHHHH
Confidence 9999999999999999999999 99999999999999999999999999999888765
No 12
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=6.9e-64 Score=657.77 Aligned_cols=635 Identities=27% Similarity=0.360 Sum_probs=491.3
Q ss_pred hHHHHHhc--CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHH
Q 000129 1330 PLYEALYQ--GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (2114)
Q Consensus 1330 ~~~~~l~~--gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~ 1407 (2114)
+.+..++. ++.++++.|+.++...+.+++|+|||+|||||||++++++|++.+.+. ++ ++|||||+++||.|++
T Consensus 18 ~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~--~~--k~vYivPlkALa~Ek~ 93 (766)
T COG1204 18 DRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG--GG--KVVYIVPLKALAEEKY 93 (766)
T ss_pred HHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc--CC--cEEEEeChHHHHHHHH
Confidence 34555655 465666666666666655599999999999999999999999999883 34 9999999999999999
Q ss_pred HHHHHHhcCCCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCC-CCchHHH
Q 000129 1408 RDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGPVLEV 1486 (2114)
Q Consensus 1408 ~~~~~~f~~~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~-~g~~le~ 1486 (2114)
++|+ +|... |++|+..|||...+...+..++|||+|||+|++++|++.. ++..|++|||||+|++++. ||+++|.
T Consensus 94 ~~~~-~~~~~-GirV~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~--~~~~V~lvViDEiH~l~d~~RG~~lE~ 169 (766)
T COG1204 94 EEFS-RLEEL-GIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPS--WIEEVDLVVIDEIHLLGDRTRGPVLES 169 (766)
T ss_pred HHhh-hHHhc-CCEEEEecCCcccchhhhccCCEEEEchHHhhHhhhcCcc--hhhcccEEEEeeeeecCCcccCceehh
Confidence 9999 77664 9999999999998888899999999999999999998544 8899999999999999997 9999999
Q ss_pred HHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhcCCCC-ceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHH
Q 000129 1487 IVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSH-GLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFT 1565 (2114)
Q Consensus 1487 i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~~~-~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~ 1565 (2114)
++++++.. ...+|+|++|||+||+.++|+|+++... ..+.+.+..|+++....+........ ..........+.
T Consensus 170 iv~r~~~~----~~~~rivgLSATlpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k-~~~~~~~~~~~~ 244 (766)
T COG1204 170 IVARMRRL----NELIRIVGLSATLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKK-TWPLLIDNLALE 244 (766)
T ss_pred HHHHHHhh----CcceEEEEEeeecCCHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccc-cccccchHHHHH
Confidence 99999977 3458999999999999999999999864 46677778888888777766553332 112223345566
Q ss_pred HHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccc-cccCCCcccch-hhHhhhhHHHHHHHhccceEeecCCC
Q 000129 1566 AIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKS-AFLLWPAEEVE-PFIDNIQEEMLKATLRHGVGYLHEGL 1643 (2114)
Q Consensus 1566 ~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~-~~l~~~~~~l~-~~~~~i~d~~L~~~l~~gV~~~H~~l 1643 (2114)
.+..++..++++||||+||+.+..+|..+............ .........+. .......+..|.+++..|+++||+||
T Consensus 245 ~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL 324 (766)
T COG1204 245 LVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGL 324 (766)
T ss_pred HHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCC
Confidence 77777789999999999999999999999864433221111 00011111111 12233445789999999999999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEE
Q 000129 1644 NKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVI 1723 (2114)
Q Consensus 1644 s~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~ii 1723 (2114)
+.++|..+++.|+.|.++|||||++++||||+|+.+|||+||.+|++..+ ..++++.+++||+|||||||+|..|.+++
T Consensus 325 ~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g-~~~i~~~dv~QM~GRAGRPg~d~~G~~~i 403 (766)
T COG1204 325 PREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGG-IVDIPVLDVLQMAGRAGRPGYDDYGEAII 403 (766)
T ss_pred CHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCC-eEECchhhHhhccCcCCCCCcCCCCcEEE
Confidence 99999999999999999999999999999999999999999999997433 78999999999999999999999999999
Q ss_pred EeecCcHHHHHHHH-------------------------------------------HhccCCCCccccCCCccchHHHH
Q 000129 1724 LCHAPRKEYYKKFL-------------------------------------------RLTQNPNYYNLQGVSHRHLSDHL 1760 (2114)
Q Consensus 1724 l~~~~~~~~~~~~l-------------------------------------------Rl~~nP~~y~l~~~s~~~l~~~l 1760 (2114)
++++.+...+..-. |++.+|.+|+. ..+
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~e~~~s~l~~~~~~~~~l~~v~~~~~~v~~~~~~~f~~~t~~~~~~~~~---------~~~ 474 (766)
T COG1204 404 LATSHDELEYLAELYIQSEPEPIESKLGDELNLRTFLLGVISVGDAVSWLELTDFYERTFYNPQTYGE---------GML 474 (766)
T ss_pred EecCccchhHHHHHhhccCcchHHHhhcccccchheEEEEEeccchhhHHHHHHHHHHHHhhhhhccc---------cch
Confidence 99655543332211 33444443332 235
Q ss_pred HHHHHHHHHHHHHCCCceecCCCccccCcccchhhhcccCHhHHHHHHhhcCCCC---ChhhHHHHHhcCccccCCCCCc
Q 000129 1761 SELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKT---RMKGLLEVLASASEYAQLPIRP 1837 (2114)
Q Consensus 1761 selve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~i~~~T~~~f~~sl~~~~---~~~~iL~ils~a~Ef~~i~vR~ 1837 (2114)
...+..++..|.+.+.+...+...+.+|.+|..+|.|||++.|++.|...+.... +..++++.++.++||..+++|.
T Consensus 475 ~~~i~~~~~~L~~~~~~~~~~~~~~~ate~g~~~s~~yi~~~sa~~~~~~l~~~~~~~~~~~~l~~is~~pd~~~~~~~~ 554 (766)
T COG1204 475 REEILASLRYLEENGLILDADWEALHATELGKLVSRLYIDPESAKIFRDLLAELALEPTEIGLLYLISLTPDLMPIKLRE 554 (766)
T ss_pred HHHHHHHHHHHHhccceeeccccccchhHHHHHhhhccCCHHHHHHHHHHHHHhccccchHHHhhhhhcCccchhhhhhh
Confidence 5678889999999874434445679999999999999999999999988766655 6889999999999999999998
Q ss_pred chHHHH--HHHHhhCCcccCCC------CCC--ChHHHHHHHHHHHhcCCCCC------CCchhhHHHHHHHHHHH----
Q 000129 1838 GEEEVV--RRLIHHQRFSFENP------KFT--DPHVKANALLQAHFSRQQVG------GNLKLDQEEVLLSASRL---- 1897 (2114)
Q Consensus 1838 ~E~~~l--~~L~~~~p~~~~~~------~~~--~~~~K~~lLLqahlsr~~lp------~~l~~D~~~il~~a~rL---- 1897 (2114)
.+...+ ..+....++..... .+. -...|+...+-+|++..+.. .....|+..+...+.|+
T Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~l~~wi~~~~~~~i~~~~~~~~~dl~~~~~~a~w~~~~~ 634 (766)
T COG1204 555 RESSELVLDELEEQSDYLLGERLDELAVEYNLLLQALKTAARLLDWINEADEDEILNAYGVAPGDLLRIAETAEWLSADL 634 (766)
T ss_pred hhhhhhhHHHHHhcchHHhhccccccchhhHHHHHHHHHHHHHHHHHHhCcHHHHHHHhCcchhhHHhhcchhhhhhhhh
Confidence 887664 33444444432211 111 12567888888898876653 23478999999999999
Q ss_pred ---HHHHHHHHHhcCCHHHH-HHHHHHHHHHHhccC-CCCCccccCCCCCHHHHHHHHcCCCCcccCHHHHh-cCCHHHH
Q 000129 1898 ---LQAMVDVISSNGWLSLA-LLAMEVSQMVTQGMW-ERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLV-EMEDDER 1971 (2114)
Q Consensus 1898 ---l~a~vdi~~~~g~l~~a-l~~m~L~q~i~Qg~w-~~~s~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~-~~~~~~r 1971 (2114)
..++-..+...+...-- ...-.+..++..|+- ++..+|..++|+++.++++++++| .+++.++. ...+.+.
T Consensus 635 ~~l~~~~~r~~~~~~~~~~~~~~~~~~~~rie~gv~~e~~~~l~~i~~~grvrar~ly~~g---~~~~~~~~~~~~~~~~ 711 (766)
T COG1204 635 LALGKAAERLAKILGLGLHVLRKLEILSLRIEYGVRSEELLELVEIRGVGRVRARKLYNAG---YKSLEDLRLIADPAEL 711 (766)
T ss_pred hhhhhhhhhhHhhhCCCccccccchhhhhhhhcCCChhhhcccccccccchhHHHHHHHhh---hccHHHHHhhcChhhh
Confidence 77777777666532210 233478889999999 788999999999999999999999 99999998 4444443
Q ss_pred HHHhcCChHHHHHHHHHHh
Q 000129 1972 RELLQMSDVQLLDIARFCN 1990 (2114)
Q Consensus 1972 ~~ll~~~~~~~~~i~~~~~ 1990 (2114)
..+-+........|...+.
T Consensus 712 ~~~~~~~~~~~~~i~~~~~ 730 (766)
T COG1204 712 LPLTGIGERLVEAILESLG 730 (766)
T ss_pred hhhhhhHHHHHHHHHHHhh
Confidence 3333345555555554444
No 13
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=5.8e-50 Score=471.71 Aligned_cols=553 Identities=24% Similarity=0.343 Sum_probs=417.5
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
++|+.++..| .|++.|.|+|..++...+-.++|++|+++|+||||+++.++-+..+... +.|.+|++|
T Consensus 200 dipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~----------g~KmlfLvP 269 (830)
T COG1202 200 DIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG----------GKKMLFLVP 269 (830)
T ss_pred CCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhC----------CCeEEEEeh
Confidence 4599999998 7999999999999999988889999999999999999999988887653 238999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh-------hccceEEEcCHhHHHHHHhccCCCcccccccEEEEec
Q 000129 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDE 631 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDE 631 (2114)
..|||+|.++.|+++..++|+++..-.|-....... ...++|||+|.|-+|.+.|.. ..+.+++.|||||
T Consensus 270 LVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg---~~lgdiGtVVIDE 346 (830)
T COG1202 270 LVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG---KDLGDIGTVVIDE 346 (830)
T ss_pred hHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC---CcccccceEEeee
Confidence 999999999999999999999999988865544332 347899999999999999976 4688999999999
Q ss_pred cccccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccC
Q 000129 632 IHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVK 710 (2114)
Q Consensus 632 aH~l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~ 710 (2114)
+|.|.| +||+.+.-++.|+.+ ..+..|+|+||||+.|+++++..|+..+. ....||||+..|.+.....
T Consensus 347 iHtL~deERG~RLdGLI~RLr~----l~~~AQ~i~LSATVgNp~elA~~l~a~lV------~y~~RPVplErHlvf~~~e 416 (830)
T COG1202 347 IHTLEDEERGPRLDGLIGRLRY----LFPGAQFIYLSATVGNPEELAKKLGAKLV------LYDERPVPLERHLVFARNE 416 (830)
T ss_pred eeeccchhcccchhhHHHHHHH----hCCCCeEEEEEeecCChHHHHHHhCCeeE------eecCCCCChhHeeeeecCc
Confidence 999998 899999999999854 45689999999999999999999997642 2356899999988754432
Q ss_pred chhHHHHHhhHHHHHHHHHHhC---CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcc
Q 000129 711 KPLQRFQLMNDLCYEKVVAVAG---KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSN 787 (2114)
Q Consensus 711 ~~~~~~~~~~~~~~~~i~~~~~---~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~ 787 (2114)
..+...++.++-........ .+|+|||++||+.|..+|..|..++...
T Consensus 417 --~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a--------------------------- 467 (830)
T COG1202 417 --SEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKA--------------------------- 467 (830)
T ss_pred --hHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCccc---------------------------
Confidence 22333334443332222222 6799999999999999999998776543
Q ss_pred hhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHh
Q 000129 788 DLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQM 867 (2114)
Q Consensus 788 ~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr 867 (2114)
+.+||||+..+|+.++..|.++.+.++|+|++|+.|||+|+-.||+..- . -+..|+|+.+|.||
T Consensus 468 ----------~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsL-----a-MG~~WLs~~EF~QM 531 (830)
T COG1202 468 ----------APYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESL-----A-MGIEWLSVREFQQM 531 (830)
T ss_pred ----------ccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHH-----H-cccccCCHHHHHHH
Confidence 4569999999999999999999999999999999999999998877421 1 12478999999999
Q ss_pred hcccCCCCCCCceEEEEEcCCCc----------HHHHHHhhc-CCCcccchhhH-hhHHHHHHHHhhccccChHHHHHHH
Q 000129 868 LGRAGRPQYDSYGEGIIITGHSE----------LRYYLSLMN-QQLPIESQFVS-KLADQLNAEIVLGTVQNAKEACNWI 935 (2114)
Q Consensus 868 ~GRAGR~g~d~~G~~iil~~~~e----------~~~~~~ll~-~~~pies~l~~-~l~d~l~~ei~~~~i~~~~~~~~wl 935 (2114)
.||||||+|...|++|++..+.. .+.-.++++ .+.|+.-...+ .-.+++.| ..|...+..+ ++-
T Consensus 532 ~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL~s~~e~V~vey~ee~e~e~vLA--~~~v~~s~~~-i~~- 607 (830)
T COG1202 532 LGRAGRPDYHDRGKVYLLVEPGKKYHASMEETEDEVAFKLLESEPEPVIVEYDEEDEEENVLA--SAGVTNSLSV-IER- 607 (830)
T ss_pred hcccCCCCcccCceEEEEecCChhhcccccccHHHHHHHHhcCCCCcceeccCcHHHHHHHHH--HhhhcCcHHH-Hhh-
Confidence 99999999999999999987543 222233443 44565554433 22233333 2232233222 111
Q ss_pred HhhHHHHhhccCCcccCCCcccccccchhhhhhHHHHHHHHHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHH
Q 000129 936 GYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTIST 1015 (2114)
Q Consensus 936 ~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~al~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~ 1015 (2114)
-|+...|-..+ ...++..|++.|||+.+ ++.+.+|+.|+++|.+++.|.++..
T Consensus 608 ----------v~~~~~g~~~~---------------~~k~l~~Lee~g~i~~~--G~~v~~T~yGrava~~Fl~p~~a~~ 660 (830)
T COG1202 608 ----------VNSLMLGAAFD---------------PKKALSKLEEYGMIKKK--GNIVRPTPYGRAVAMSFLGPSEAEF 660 (830)
T ss_pred ----------cChhhccccCC---------------HHHHHHHHHhcCCeecc--CCEeeeccccceeEEeecCchHHHH
Confidence 12222222111 24678899999999855 3569999999999999999999998
Q ss_pred HHhhcCCCCCHHHHHHHhhCCccCCCCcCChhHHHHHHHHhc-cCCCCCCC-----------CCC--Ch--hHHHHHHHH
Q 000129 1016 YNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLD-RVPIPVKE-----------SLE--EP--SAKINVLLQ 1079 (2114)
Q Consensus 1016 ~~~~l~~~~~~~~~l~i~s~s~ef~~i~~r~~e~~~l~~l~~-~~~~~~~~-----------~~~--~~--~~K~~~llq 1079 (2114)
+...+-..+ +.|++++.-.=|++..+...=+.++.+.+. ++|..+-. .+- +| ..|...+.|
T Consensus 661 Ir~~v~~~~---~pl~i~~~l~pfE~ayls~~l~r~i~~~~~~~vpsr~f~~a~~~I~~e~d~ii~ld~k~~e~l~~i~~ 737 (830)
T COG1202 661 IREGVLASM---DPLRIAAELEPFENAYLSGFLKRAIESALRGRVPSRLFDSALLDILEEGDKIIELDPKLKEKLLLIYM 737 (830)
T ss_pred HHHhhhccC---ChHhHhhccccccccccChHHHHHHHHHhcCCCchhhhhHHHHHHHhchhhhhcCCHHHHHHHHHHHH
Confidence 888753333 567788888888888888777777766543 33332111 010 22 345666667
Q ss_pred HHHhc-------------------ccCC-------------CCccc---chHHHHHHhHHHHHHHHHHHHHHcCcHHHHH
Q 000129 1080 AYISQ-------------------LKLE-------------GLSLT---SDMVFITQSAGRLLRALFEIVLKRGWAQLAE 1124 (2114)
Q Consensus 1080 ~~i~~-------------------~~~~-------------~~~l~---~d~~~i~~~a~rl~~a~~ei~~~~~~~~~~~ 1124 (2114)
.+++. ++++ .|.+. +|..+-++++.|++.|.-.||...+-...+.
T Consensus 738 df~~c~c~d~ce~~~~~lse~ii~lR~~gk~p~~Isr~l~~~Ygi~aYpgDif~wLd~~vr~Lea~~rIArvf~kr~~~~ 817 (830)
T COG1202 738 DFLNCTCRDCCECAEQRLSEKIIELRIEGKDPSQISRILEKRYGIQAYPGDIFTWLDTLVRLLEAIGRIARVFKKREVEA 817 (830)
T ss_pred HHhcCchhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhCeeecChhHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 77663 1222 24443 8999999999999999999998777667777
Q ss_pred HHHHHHHHHHc
Q 000129 1125 KALNLSKMVTK 1135 (2114)
Q Consensus 1125 ~~~~l~~~~~~ 1135 (2114)
.+..|.+-|+.
T Consensus 818 ea~~lk~~ie~ 828 (830)
T COG1202 818 EAKALKKKIEE 828 (830)
T ss_pred HHHHHHHHhhc
Confidence 77777777654
No 14
>smart00611 SEC63 Domain of unknown function in Sec63p, Brr2p and other proteins.
Probab=100.00 E-value=1.6e-50 Score=497.30 Aligned_cols=307 Identities=45% Similarity=0.753 Sum_probs=288.5
Q ss_pred cccCcccchhhhcccCHhHHHHHHhhcCCCCChhhHHHHHhcCccccCCCCCcchHHHHHHHHhhCCcccCCCCCCChHH
Q 000129 1785 LSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHV 1864 (2114)
Q Consensus 1785 ~~~t~lG~i~s~y~i~~~T~~~f~~sl~~~~~~~~iL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~p~~~~~~~~~~~~~ 1864 (2114)
+.||++|+|||+|||++.|++.|...+++.++..++|++||.|.||.++|+|++|+..+.+|++.+|++.+...+.+|+.
T Consensus 2 ~~~T~~Grias~yYI~~~T~~~f~~~l~~~~~~~~lL~~ls~a~Ef~~i~vR~~E~~~l~~l~~~~~~~~~~~~~~~~~~ 81 (312)
T smart00611 2 IWPTDLGRIASYYYISYTTIRTFNELLKPKMTTKDLLRILSMSSEFDQIPVRHEEDLLLEELAEKLPIRLENPSLDDPHV 81 (312)
T ss_pred cccchhHHHHhhhccChHHHHHHHHhcCCCCCHHHHHHHHhCcHhhCCCCCCccHHHHHHHHHHhCCcCcCCCCCCCchH
Confidence 57999999999999999999999999999999999999999999999999999999999999999998876556788999
Q ss_pred HHHHHHHHHhcCCCCC-CCchhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCCCCccccCCCCCH
Q 000129 1865 KANALLQAHFSRQQVG-GNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMK 1943 (2114)
Q Consensus 1865 K~~lLLqahlsr~~lp-~~l~~D~~~il~~a~rLl~a~vdi~~~~g~l~~al~~m~L~q~i~Qg~w~~~s~L~QLP~i~~ 1943 (2114)
|+++||||||+|+++| .+|.+|+.+|+++|+||++||+||+...||+.+++++|+|+|||+||+|++++||+|||||++
T Consensus 82 K~~lLLqa~i~r~~l~~~~l~~D~~~vl~~a~rll~al~di~~~~~~~~~~~~~l~L~q~i~q~~w~~~~~L~Qlp~i~~ 161 (312)
T smart00611 82 KANLLLQAHLSRLKLPSFALESDTVYVLQNAGRLLQAMVDIALERGWLSTALNALNLSQMIIQALWPTDSPLLQLPHLPE 161 (312)
T ss_pred HHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhCCCCCccccCCCCCH
Confidence 9999999999999997 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhcCCceEEEEEEeccccccCCCcEEEEEEEEEcC
Q 000129 1944 DLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDL 2023 (2114)
Q Consensus 1944 ~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~~P~i~v~~~v~~~~~v~~g~~~~l~v~l~r~~ 2023 (2114)
+.+++|.++| +.++.||.+++++++..+++++++++++|+++|++||+++|++++.+...+..+..++++++++++.
T Consensus 162 ~~~~~l~~~~---i~s~~~l~~~~~~~~~~ll~~~~~~~~~i~~~~~~~P~l~v~~~~~~~~~~~~~~~~~i~~~~~~~~ 238 (312)
T smart00611 162 EILKRLEKKK---VLSLEDLLELEDEERGELLGLLDAEGERVYKVLSRLPKLNIEISLEPITRTVLGVEVTLTVDLTWDD 238 (312)
T ss_pred HHHHHHHhCC---CCCHHHHHhcCHHHHHHHHcCCHHHHHHHHHHHHhCCcceeEEEEcCCcccccCceEEEEEEEEEcc
Confidence 9999999999 9999999999999999999999999999999999999999999998766677889999999999842
Q ss_pred CCCcccCccccCCCCCCccccEEEEEEECCCCeEEEEEEeeccccc---EEEEEEEecCCCCceEEEEEEEecCccccCe
Q 000129 2024 EGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKS---RVKLDFAAPAEAGKKTYTLYFMCDSYMGCDQ 2100 (2114)
Q Consensus 2024 ~~~~~~~~v~ap~fp~~k~e~Wwlvvgd~~~~~L~~~krv~~~~~~---~~~l~f~~p~~~G~~~~~l~~~sDsY~G~D~ 2100 (2114)
.+| .|.|+||++|||.++|+|++++|+++.+.. +++++|.+|..+|.|+|++++|||||+|||+
T Consensus 239 -------~~~------~k~e~~~l~v~d~~~~~il~~~~~~~~~~~~~~~~~l~f~~P~~~~~~~~~v~v~SD~y~g~d~ 305 (312)
T smart00611 239 -------EIH------GKQEGWWLVIGDSDGNELLHIERFSLNKKNVSEEVKLDFTAPATEGNYQYTLRLVSDSYLGCDQ 305 (312)
T ss_pred -------ccc------CCcccEEEEEEeCCCCEEEEEEEEEEEeecCCCcEEEEEEecCCCCcceEEEEEEecccCCcce
Confidence 122 689999999999999999999999997544 7899999998789999999999999999999
Q ss_pred EEEEEEE
Q 000129 2101 EYAFTVD 2107 (2114)
Q Consensus 2101 ~~~~~~~ 2107 (2114)
+++|+++
T Consensus 306 ~~~i~~~ 312 (312)
T smart00611 306 EYPLSFD 312 (312)
T ss_pred EEEEeeC
Confidence 9999873
No 15
>smart00611 SEC63 Domain of unknown function in Sec63p, Brr2p and other proteins.
Probab=100.00 E-value=1.2e-50 Score=498.31 Aligned_cols=308 Identities=45% Similarity=0.765 Sum_probs=294.0
Q ss_pred cccChhHHHHhhcccccccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChhHHHHHHHHhccCCCCCC-CCCCChhH
Q 000129 994 FQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVK-ESLEEPSA 1072 (2114)
Q Consensus 994 ~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~i~s~s~ef~~i~~r~~e~~~l~~l~~~~~~~~~-~~~~~~~~ 1072 (2114)
+.+|++|++||+|||++.||+.|++.+++.++..++|.++|.|.||.++++|++|+.+|.+|...+|++.+ ...+.++.
T Consensus 2 ~~~T~~Grias~yYI~~~T~~~f~~~l~~~~~~~~lL~~ls~a~Ef~~i~vR~~E~~~l~~l~~~~~~~~~~~~~~~~~~ 81 (312)
T smart00611 2 IWPTDLGRIASYYYISYTTIRTFNELLKPKMTTKDLLRILSMSSEFDQIPVRHEEDLLLEELAEKLPIRLENPSLDDPHV 81 (312)
T ss_pred cccchhHHHHhhhccChHHHHHHHHhcCCCCCHHHHHHHHhCcHhhCCCCCCccHHHHHHHHHHhCCcCcCCCCCCCchH
Confidence 57999999999999999999999999999999999999999999999999999999999999999998876 45788999
Q ss_pred HHHHHHHHHHhcccCCCCcccchHHHHHHhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHccccCCCCccccCCCCCH
Q 000129 1073 KINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPN 1152 (2114)
Q Consensus 1073 K~~~llq~~i~~~~~~~~~l~~d~~~i~~~a~rl~~a~~ei~~~~~~~~~~~~~~~l~~~~~~~~w~~~~~l~q~~~~~~ 1152 (2114)
|+++||||||+|++++.++|.+|+.+|+++|.||++||+||+..+||+..+.++++|+|||+||+|++++||+||||+++
T Consensus 82 K~~lLLqa~i~r~~l~~~~l~~D~~~vl~~a~rll~al~di~~~~~~~~~~~~~l~L~q~i~q~~w~~~~~L~Qlp~i~~ 161 (312)
T smart00611 82 KANLLLQAHLSRLKLPSFALESDTVYVLQNAGRLLQAMVDIALERGWLSTALNALNLSQMIIQALWPTDSPLLQLPHLPE 161 (312)
T ss_pred HHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhCCCCCccccCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC-chhhhccCChHHhhhhhcCc-hhHHHHHHHHhcCCceeEEEEEeeccCceEEEEEEEccCCccCCCCC
Q 000129 1153 EILMKLEKKDF-AWERYYDLSPQELGELIRFP-KMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVH 1230 (2114)
Q Consensus 1153 ~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~P~~~~~~~~~~~~~~~l~~~l~i~~~f~~~~~~~ 1230 (2114)
+.+++|+++|+ +++++.++++++++.+++++ +.++.|+++++.||++++++.++|+++..+++.++++++|.|+..+|
T Consensus 162 ~~~~~l~~~~i~s~~~l~~~~~~~~~~ll~~~~~~~~~i~~~~~~~P~l~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 241 (312)
T smart00611 162 EILKRLEKKKVLSLEDLLELEDEERGELLGLLDAEGERVYKVLSRLPKLNIEISLEPITRTVLGVEVTLTVDLTWDDEIH 241 (312)
T ss_pred HHHHHHHhCCCCCHHHHHhcCHHHHHHHHcCCHHHHHHHHHHHHhCCcceeEEEEcCCcccccCceEEEEEEEEEccccc
Confidence 99999999885 89999999999999999876 88999999999999999999999999999999999999999999999
Q ss_pred CccccEEEEEEeCCCCeEEEEEeeeeeecccccccEEEEEeccCCCCCCeEEEEEeccccccCccccccccc
Q 000129 1231 GYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFR 1302 (2114)
Q Consensus 1231 ~~~~~~wi~v~d~~~~~i~~~~~~~l~~~~~~~~~~~~f~vp~~~p~p~~y~v~~vSD~wl~~e~~~~is~~ 1302 (2114)
+..+.||+||+|+++++|+|+++|.+++....+++.++|.+|..++. ++|+++++||+|+||+...+++|+
T Consensus 242 ~k~e~~~l~v~d~~~~~il~~~~~~~~~~~~~~~~~l~f~~P~~~~~-~~~~v~v~SD~y~g~d~~~~i~~~ 312 (312)
T smart00611 242 GKQEGWWLVIGDSDGNELLHIERFSLNKKNVSEEVKLDFTAPATEGN-YQYTLRLVSDSYLGCDQEYPLSFD 312 (312)
T ss_pred CCcccEEEEEEeCCCCEEEEEEEEEEEeecCCCcEEEEEEecCCCCc-ceEEEEEEecccCCcceEEEEeeC
Confidence 99999999999999999999999999887665678999999976665 999999999999999999998864
No 16
>PF02889 Sec63: Sec63 Brl domain; InterPro: IPR004179 This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found. This protein is required for assembly of functional endoplasmic reticulum translocons [, ]. Other yeast proteins containing this domain include pre-mRNA splicing helicase BRR2, HFM1 protein and putative helicases. ; PDB: 3IM2_A 3IM1_A 3HIB_A 2Q0Z_X.
Probab=100.00 E-value=6.6e-49 Score=484.01 Aligned_cols=307 Identities=38% Similarity=0.667 Sum_probs=238.9
Q ss_pred cCcccchhhhcccCHhHHHHHHhhcCCCCChhhHHHHHhcCccccCCCCCcchHHHHHHHHhhCCcccCCCCCCChHHHH
Q 000129 1787 PSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKA 1866 (2114)
Q Consensus 1787 ~t~lG~i~s~y~i~~~T~~~f~~sl~~~~~~~~iL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~p~~~~~~~~~~~~~K~ 1866 (2114)
||++|+|||+|||++.||+.|...+++.++..++|++||.|.||+++|+|++|+..|.+|++.+|++++...+.+|+.|+
T Consensus 1 pT~lG~i~s~yyi~~~T~~~~~~~l~~~~~~~~il~~l~~a~EF~~i~~R~~E~~~l~~l~~~~~~~~~~~~~~~~~~K~ 80 (314)
T PF02889_consen 1 PTELGRIMSRYYISFETMENFFESLKEDMSEKDILELLSSAEEFSEIPVRHNEKKELNELNKKIPYPIKKEKINDPHIKA 80 (314)
T ss_dssp ---CGC--------HHHHHHHHHH--TT--HHHHHHHHHTSGGGCCS---TTHHHHHHHHHCCSSS--STS-TTSHHHHH
T ss_pred CCHHHHHHHHhcccHHHHHHHHHHCCCCCCHHHHHHHHcCcHhHhhCccchhhHHHHHHHHHhcccCccccccccHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999887556788999999
Q ss_pred HHHHHHHhcCCCCC-CCchhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHH
Q 000129 1867 NALLQAHFSRQQVG-GNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDL 1945 (2114)
Q Consensus 1867 ~lLLqahlsr~~lp-~~l~~D~~~il~~a~rLl~a~vdi~~~~g~l~~al~~m~L~q~i~Qg~w~~~s~L~QLP~i~~~~ 1945 (2114)
++||||||+|+++| .+|..|+..|+++++||++||+|++...||+.++.++|+|+|||+||+|+.++||+|||||+++.
T Consensus 81 ~~Llqa~l~r~~l~~~~l~~D~~~i~~~~~Rll~a~~ei~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~L~Qlp~i~~~~ 160 (314)
T PF02889_consen 81 FVLLQAHLSRIPLPDSSLRQDLKYILDNAPRLLRAMIEIALEKGWLSTALNALELSQCIVQALWDSDSPLLQLPHIGEES 160 (314)
T ss_dssp HHHHHHHHCT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTBCCHHHHHHHHHHHHHHTS-TTS-GGGGSTT--HHH
T ss_pred HHHHHHhccCCCcCchhHHhhHHhhhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhcCCCCChhhcCCCCCHHH
Confidence 99999999999999 89999999999999999999999999999999999999999999999999899999999999999
Q ss_pred HHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhcCCceEEEEEEeccc-cccCCCcEEEEEEEEEcCC
Q 000129 1946 AKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSE-NVRAGEDITLQVVLERDLE 2024 (2114)
Q Consensus 1946 ~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~~P~i~v~~~v~~~~-~v~~g~~~~l~v~l~r~~~ 2024 (2114)
+++|.++| |.++.+|+++++++++.+++.+++++.+|.++++++|.++|++++.... .+. ..++++|++++.+
T Consensus 161 ~~~l~~~~---i~~l~~l~~~~~~e~~~ll~~~~~~~~~i~~~~~~~P~~~i~~~~~~~~~~~~--~~~~v~v~i~~~~- 234 (314)
T PF02889_consen 161 LKKLEKRG---IKTLQDLRDLSPEELEELLNRNPPFGKEILEVASRIPRLEIKASVQVIDEEIV--PILTVQVSITRKF- 234 (314)
T ss_dssp HHHHHHTT-----SHHHHHHS-HHHHHHHH-S-HHHHHHHHHHHCCS--EEEEEEETTCCGEEC--SEEEEEEEEEESS-
T ss_pred HHHHhccC---CCcHHHHhhCCHHHHHHHHhhhhhhHHHHHHHHHHCCCEEEEEEEeccccccC--CcEEEEEEEEccc-
Confidence 99999999 9999999999999999999999999999999999999999988886431 111 5689999999954
Q ss_pred CCcccCccccCCCCCCccccEEEEEEECCCCeEEEEEEeec-cc--ccEEEEEEEecCCCCc--eEEEEEEEecCccccC
Q 000129 2025 GRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSL-QR--KSRVKLDFAAPAEAGK--KTYTLYFMCDSYMGCD 2099 (2114)
Q Consensus 2025 ~~~~~~~v~ap~fp~~k~e~Wwlvvgd~~~~~L~~~krv~~-~~--~~~~~l~f~~p~~~G~--~~~~l~~~sDsY~G~D 2099 (2114)
...++||+.|.|+||++|||.++|+|+.++|+++ .+ .....++|++|..+|. ++|+++++||+|+|+|
T Consensus 235 -------~~~~~~~~~k~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~vp~~~~~~~~~~~v~v~sd~y~G~d 307 (314)
T PF02889_consen 235 -------SWSDRFPKKKKESWWLFVGDSKNNELLHFERITISKKKSKDTVKISFQVPIPVGPRPYQYTVYVISDSYLGLD 307 (314)
T ss_dssp -------S-SST-SS--B--EEEEEEECCCTEEEEEEEE---SS--EEEEEEEEE--SS-EE--EEEEEEEEESS-SS--
T ss_pred -------ccccCCCCCCcccEEEEEEECCCCeEEEEeeeehhhhccCCcEEEEEEecCCCCCCCceEEEEEEECCccccc
Confidence 2334999999999999999999999999999999 44 6789999999966577 9999999999999999
Q ss_pred eEEEEEE
Q 000129 2100 QEYAFTV 2106 (2114)
Q Consensus 2100 ~~~~~~~ 2106 (2114)
++++|+|
T Consensus 308 ~~~~i~~ 314 (314)
T PF02889_consen 308 QEVPINF 314 (314)
T ss_dssp EEEEEEE
T ss_pred eEEEeeC
Confidence 9999986
No 17
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=2.2e-45 Score=433.19 Aligned_cols=528 Identities=21% Similarity=0.283 Sum_probs=381.2
Q ss_pred hHHHHHhc--CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHH
Q 000129 1330 PLYEALYQ--GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (2114)
Q Consensus 1330 ~~~~~l~~--gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~ 1407 (2114)
+.|+.++. |++.+.|+|+-++.+-+-.++|.+|.++|+||||++.++|=+..+.. .++ |.+|++|..+||+|.+
T Consensus 203 e~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~--~g~--KmlfLvPLVALANQKy 278 (830)
T COG1202 203 EKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS--GGK--KMLFLVPLVALANQKY 278 (830)
T ss_pred HHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh--CCC--eEEEEehhHHhhcchH
Confidence 45677765 79999999999999976667889999999999999999999888776 244 9999999999999999
Q ss_pred HHHHHHhcCCCCcEEEEEcCCcccc-------hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC-C
Q 000129 1408 RDWEIKFGQGLGMRVVELTGETAMD-------LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-Q 1479 (2114)
Q Consensus 1408 ~~~~~~f~~~~g~~v~~l~G~~~~~-------~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~-~ 1479 (2114)
.+|++++++. |+++..-.|-.... ...-..+||||+|.|-+|.++|.. ..+.+++.|||||+|+|.+ +
T Consensus 279 ~dF~~rYs~L-glkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg---~~lgdiGtVVIDEiHtL~deE 354 (830)
T COG1202 279 EDFKERYSKL-GLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG---KDLGDIGTVVIDEIHTLEDEE 354 (830)
T ss_pred HHHHHHhhcc-cceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC---CcccccceEEeeeeeeccchh
Confidence 9999999764 88887777643322 223346799999999999999973 6789999999999999988 7
Q ss_pred CCchHHHHHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEeccccc-chHHHHHh
Q 000129 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDIT-NFEARMQA 1558 (2114)
Q Consensus 1480 ~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~-~~~~~~~~ 1558 (2114)
+|+.+.-++.|++++. +..|+|++|||+.|+.++|..+|+.. ..-+.||||++-|+.-.... ........
T Consensus 355 RG~RLdGLI~RLr~l~----~~AQ~i~LSATVgNp~elA~~l~a~l-----V~y~~RPVplErHlvf~~~e~eK~~ii~~ 425 (830)
T COG1202 355 RGPRLDGLIGRLRYLF----PGAQFIYLSATVGNPEELAKKLGAKL-----VLYDERPVPLERHLVFARNESEKWDIIAR 425 (830)
T ss_pred cccchhhHHHHHHHhC----CCCeEEEEEeecCChHHHHHHhCCee-----EeecCCCCChhHeeeeecCchHHHHHHHH
Confidence 9999999999999984 47999999999999999999999875 22356999999887643311 11122222
Q ss_pred cCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEe
Q 000129 1559 MTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGY 1638 (2114)
Q Consensus 1559 ~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~ 1638 (2114)
+.+..+...... .-.+|+|||++||+.|..+|..|.. -+..+.+
T Consensus 426 L~k~E~~~~ssk-g~rGQtIVFT~SRrr~h~lA~~L~~-----------------------------------kG~~a~p 469 (830)
T COG1202 426 LVKREFSTESSK-GYRGQTIVFTYSRRRCHELADALTG-----------------------------------KGLKAAP 469 (830)
T ss_pred HHHHHHhhhhcc-CcCCceEEEecchhhHHHHHHHhhc-----------------------------------CCccccc
Confidence 222223222222 3468999999999999999976621 1345789
Q ss_pred ecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEE----EeeeEecCCcCcCCCCCHhHHHHhHcccCCCC
Q 000129 1639 LHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVV----MGTQYYDGQENAHTDYPVTDLLQMMGHASRPL 1714 (2114)
Q Consensus 1639 ~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI----~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~ 1714 (2114)
||+||+..+|+.++..|.++.+.++|+|..++.|||+|+..||+ ||. .+.++.+|.||.||||||+
T Consensus 470 YHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~----------~WLs~~EF~QM~GRAGRp~ 539 (830)
T COG1202 470 YHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGI----------EWLSVREFQQMLGRAGRPD 539 (830)
T ss_pred ccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHccc----------ccCCHHHHHHHhcccCCCC
Confidence 99999999999999999999999999999999999999999887 443 3678999999999999999
Q ss_pred CCCceEEEEEeecCcHHHH-------HHHHHhccC-CCCcccc--------------CC--CccchHHH----HH--HHH
Q 000129 1715 LDNSGKCVILCHAPRKEYY-------KKFLRLTQN-PNYYNLQ--------------GV--SHRHLSDH----LS--ELV 1764 (2114)
Q Consensus 1715 ~~~~G~~iil~~~~~~~~~-------~~~lRl~~n-P~~y~l~--------------~~--s~~~l~~~----ls--elv 1764 (2114)
++..|++|+++.+.++..- +-.++++.. |.-..+. ++ +...+.+. +. --.
T Consensus 540 yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL~s~~e~V~vey~ee~e~e~vLA~~~v~~s~~~i~~v~~~~~g~~~~~ 619 (830)
T COG1202 540 YHDRGKVYLLVEPGKKYHASMEETEDEVAFKLLESEPEPVIVEYDEEDEEENVLASAGVTNSLSVIERVNSLMLGAAFDP 619 (830)
T ss_pred cccCceEEEEecCChhhcccccccHHHHHHHHhcCCCCcceeccCcHHHHHHHHHHhhhcCcHHHHhhcChhhccccCCH
Confidence 9999999999987643211 011122222 2111000 00 00000000 00 124
Q ss_pred HHHHHHHHHCCCceecCCCccccCcccchhhhcccCHhHHHHHHhhcCCCCChhhHHHHHhcCccccCCCCCcchHHHHH
Q 000129 1765 ENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVR 1844 (2114)
Q Consensus 1765 e~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~i~~~T~~~f~~sl~~~~~~~~iL~ils~a~Ef~~i~vR~~E~~~l~ 1844 (2114)
++++..|++.|+|..+. +.+.||+.|+++|.+.+.|.++..+...+-..+ +.+.+++.-.=|++..+...=...+.
T Consensus 620 ~k~l~~Lee~g~i~~~G-~~v~~T~yGrava~~Fl~p~~a~~Ir~~v~~~~---~pl~i~~~l~pfE~ayls~~l~r~i~ 695 (830)
T COG1202 620 KKALSKLEEYGMIKKKG-NIVRPTPYGRAVAMSFLGPSEAEFIREGVLASM---DPLRIAAELEPFENAYLSGFLKRAIE 695 (830)
T ss_pred HHHHHHHHhcCCeeccC-CEeeeccccceeEEeecCchHHHHHHHhhhccC---ChHhHhhccccccccccChHHHHHHH
Confidence 67899999999997653 359999999999999999999999998754443 34556666666766655543333333
Q ss_pred HH-HhhCCcccCC----------CCC--CChH--HHHHHHHHHHhcC---------------------C------CCC--
Q 000129 1845 RL-IHHQRFSFEN----------PKF--TDPH--VKANALLQAHFSR---------------------Q------QVG-- 1880 (2114)
Q Consensus 1845 ~L-~~~~p~~~~~----------~~~--~~~~--~K~~lLLqahlsr---------------------~------~lp-- 1880 (2114)
.. .-++|..+.. .++ -+|. .|.+++.++.++- + .++
T Consensus 696 ~~~~~~vpsr~f~~a~~~I~~e~d~ii~ld~k~~e~l~~i~~df~~c~c~d~ce~~~~~lse~ii~lR~~gk~p~~Isr~ 775 (830)
T COG1202 696 SALRGRVPSRLFDSALLDILEEGDKIIELDPKLKEKLLLIYMDFLNCTCRDCCECAEQRLSEKIIELRIEGKDPSQISRI 775 (830)
T ss_pred HHhcCCCchhhhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 22 2233332211 011 1232 4455555555551 0 011
Q ss_pred -------CCchhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000129 1881 -------GNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMV 1924 (2114)
Q Consensus 1881 -------~~l~~D~~~il~~a~rLl~a~vdi~~~~g~l~~al~~m~L~q~i 1924 (2114)
..|++|....|+++.|++.|.-.|+...+--..+..|+.|..-+
T Consensus 776 l~~~Ygi~aYpgDif~wLd~~vr~Lea~~rIArvf~kr~~~~ea~~lk~~i 826 (830)
T COG1202 776 LEKRYGIQAYPGDIFTWLDTLVRLLEAIGRIARVFKKREVEAEAKALKKKI 826 (830)
T ss_pred HHHhhCeeecChhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 13589999999999999999999997665333333455554443
No 18
>PF02889 Sec63: Sec63 Brl domain; InterPro: IPR004179 This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found. This protein is required for assembly of functional endoplasmic reticulum translocons [, ]. Other yeast proteins containing this domain include pre-mRNA splicing helicase BRR2, HFM1 protein and putative helicases. ; PDB: 3IM2_A 3IM1_A 3HIB_A 2Q0Z_X.
Probab=100.00 E-value=4.3e-47 Score=467.89 Aligned_cols=305 Identities=39% Similarity=0.662 Sum_probs=243.4
Q ss_pred cChhHHHHhhcccccccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChhHHHHHHHHhccCCCCC-CCCCCChhHHH
Q 000129 996 VTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPV-KESLEEPSAKI 1074 (2114)
Q Consensus 996 ~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~i~s~s~ef~~i~~r~~e~~~l~~l~~~~~~~~-~~~~~~~~~K~ 1074 (2114)
||++|+|||+|||++.||..|.+.+++.++..++|.++|.|.||.++++|++|+.+|.+|..++|+|+ ++.+.+++.|+
T Consensus 1 pT~lG~i~s~yyi~~~T~~~~~~~l~~~~~~~~il~~l~~a~EF~~i~~R~~E~~~l~~l~~~~~~~~~~~~~~~~~~K~ 80 (314)
T PF02889_consen 1 PTELGRIMSRYYISFETMENFFESLKEDMSEKDILELLSSAEEFSEIPVRHNEKKELNELNKKIPYPIKKEKINDPHIKA 80 (314)
T ss_dssp ---CGC--------HHHHHHHHHH--TT--HHHHHHHHHTSGGGCCS---TTHHHHHHHHHCCSSS--STS-TTSHHHHH
T ss_pred CCHHHHHHHHhcccHHHHHHHHHHCCCCCCHHHHHHHHcCcHhHhhCccchhhHHHHHHHHHhcccCccccccccHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999998 77799999999
Q ss_pred HHHHHHHHhcccCCCCcccchHHHHHHhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHccccCCCCccccCCCCCHHH
Q 000129 1075 NVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEI 1154 (2114)
Q Consensus 1075 ~~llq~~i~~~~~~~~~l~~d~~~i~~~a~rl~~a~~ei~~~~~~~~~~~~~~~l~~~~~~~~w~~~~~l~q~~~~~~~~ 1154 (2114)
++||||||+|+++++++|.+|+.+|+++|.||++||+|||..+||+..+.++++|+|||.||+|++.+||+|||||+++.
T Consensus 81 ~~Llqa~l~r~~l~~~~l~~D~~~i~~~~~Rll~a~~ei~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~L~Qlp~i~~~~ 160 (314)
T PF02889_consen 81 FVLLQAHLSRIPLPDSSLRQDLKYILDNAPRLLRAMIEIALEKGWLSTALNALELSQCIVQALWDSDSPLLQLPHIGEES 160 (314)
T ss_dssp HHHHHHHHCT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTBCCHHHHHHHHHHHHHHTS-TTS-GGGGSTT--HHH
T ss_pred HHHHHHhccCCCcCchhHHhhHHhhhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhcCCCCChhhcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCC-CchhhhccCChHHhhhhhc-CchhHHHHHHHHhcCCceeEEEEEeeccCce---EEEEEEEccCCccCCCC
Q 000129 1155 LMKLEKKD-FAWERYYDLSPQELGELIR-FPKMGRTLHKFVHQFPKLILAAHVQPITRTV---LKVELTITPDFLWDDKV 1229 (2114)
Q Consensus 1155 ~~~l~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~P~~~~~~~~~~~~~~~---l~~~l~i~~~f~~~~~~ 1229 (2114)
+++|+++| .+++++.+++++++..+++ .+..|+.|.+++++||+++++++++|++.+. ++|+|++++.|.|+..+
T Consensus 161 ~~~l~~~~i~~l~~l~~~~~~e~~~ll~~~~~~~~~i~~~~~~~P~~~i~~~~~~~~~~~~~~~~v~v~i~~~~~~~~~~ 240 (314)
T PF02889_consen 161 LKKLEKRGIKTLQDLRDLSPEELEELLNRNPPFGKEILEVASRIPRLEIKASVQVIDEEIVPILTVQVSITRKFSWSDRF 240 (314)
T ss_dssp HHHHHHTT--SHHHHHHS-HHHHHHHH-S-HHHHHHHHHHHCCS--EEEEEEETTCCGEECSEEEEEEEEEESSS-SST-
T ss_pred HHHHhccCCCcHHHHhhCCHHHHHHHHhhhhhhHHHHHHHHHHCCCEEEEEEEeccccccCCcEEEEEEEEcccccccCC
Confidence 99999999 4899999999999999997 7899999999999999999999999999888 99999999999999999
Q ss_pred CCc-cccEEEEEEeCCCCeEEEEEeeee-eecccccccEEEEEeccC-CCCCCeEEEEEeccccccCcccccccc
Q 000129 1230 HGY-VEPFWVIVEDNDGEYILHHEYFML-KKQYIEEDHSLNFTVPIY-EPLPPQYFIRVVSDKWLGSQTVLPVSF 1301 (2114)
Q Consensus 1230 ~~~-~~~~wi~v~d~~~~~i~~~~~~~l-~~~~~~~~~~~~f~vp~~-~p~p~~y~v~~vSD~wl~~e~~~~is~ 1301 (2114)
|+. .+.||++|+|.+++.|+|++++.+ +++ ......++|++|.. .|.+++|.++++||+|+|++..++++|
T Consensus 241 ~~~k~~~~~~~v~~~~~~~l~~~~~~~~~~~~-~~~~~~~~f~vp~~~~~~~~~~~v~v~sd~y~G~d~~~~i~~ 314 (314)
T PF02889_consen 241 PKKKKESWWLFVGDSKNNELLHFERITISKKK-SKDTVKISFQVPIPVGPRPYQYTVYVISDSYLGLDQEVPINF 314 (314)
T ss_dssp SS--B--EEEEEEECCCTEEEEEEEE---SS---EEEEEEEEE--SS-EE--EEEEEEEEESS-SS--EEEEEEE
T ss_pred CCCCcccEEEEEEECCCCeEEEEeeeehhhhc-cCCcEEEEEEecCCCCCCCceEEEEEEECCccccceEEEeeC
Confidence 998 899999999999999999999999 332 35678899999986 666699999999999999999998875
No 19
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.6e-45 Score=416.79 Aligned_cols=336 Identities=22% Similarity=0.337 Sum_probs=278.9
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.|++.|++||++++|.++.+.+ +|..|.||||||.+|.+||++.+...+ ..+.+++++|||+||.|+.+.|
T Consensus 79 l~~~~PT~IQ~~aiP~~L~g~d-vIglAeTGSGKT~afaLPIl~~LL~~p--------~~~~~lVLtPtRELA~QI~e~f 149 (476)
T KOG0330|consen 79 LGWKKPTKIQSEAIPVALGGRD-VIGLAETGSGKTGAFALPILQRLLQEP--------KLFFALVLTPTRELAQQIAEQF 149 (476)
T ss_pred hCcCCCchhhhhhcchhhCCCc-EEEEeccCCCchhhhHHHHHHHHHcCC--------CCceEEEecCcHHHHHHHHHHH
Confidence 5799999999999999998876 999999999999999999999998864 3479999999999999999999
Q ss_pred HHhhccCCcEEEEEeCCCccChh---hhccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccccccc-CCchhHHH
Q 000129 571 SNRLQMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLES 645 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~---~~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~ 645 (2114)
..+....|++|..+.|+.+...+ ....++|+|+||+++ |.+..... ..+..++++|+||||.+.| +|++.++.
T Consensus 150 e~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkg--f~le~lk~LVlDEADrlLd~dF~~~ld~ 227 (476)
T KOG0330|consen 150 EALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKG--FSLEQLKFLVLDEADRLLDMDFEEELDY 227 (476)
T ss_pred HHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccC--ccHHHhHHHhhchHHhhhhhhhHHHHHH
Confidence 99888999999999999887654 356899999999995 88875443 5688999999999999998 68888888
Q ss_pred HHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEee-cCCcccc-cceeEEEeeccCchhHHHHHhhHHH
Q 000129 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYF-DNSYRPV-PLSQQYIGIQVKKPLQRFQLMNDLC 723 (2114)
Q Consensus 646 iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f-~~~~rpv-~l~~~~~~~~~~~~~~~~~~~~~~~ 723 (2114)
|+..+ +...|.+++|||+| ..+.+..+..+..+.-.. ...|+.+ .+.|+|..++.+.....+
T Consensus 228 ILk~i-------p~erqt~LfsATMt--~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yL------- 291 (476)
T KOG0330|consen 228 ILKVI-------PRERQTFLFSATMT--KKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYL------- 291 (476)
T ss_pred HHHhc-------CccceEEEEEeecc--hhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhH-------
Confidence 77665 57889999999999 567777777665554433 3344544 356666655544322211
Q ss_pred HHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCC
Q 000129 724 YEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAG 803 (2114)
Q Consensus 724 ~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHag 803 (2114)
-.+++...++++||||+|...+..++-.|+..++.+..+ ||.
T Consensus 292 -V~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~L-------------------------------------hGq 333 (476)
T KOG0330|consen 292 -VYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPL-------------------------------------HGQ 333 (476)
T ss_pred -HHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecc-------------------------------------cch
Confidence 123334447899999999999999999999988766554 999
Q ss_pred CCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEE
Q 000129 804 MTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883 (2114)
Q Consensus 804 l~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~i 883 (2114)
|++..|.-.++.|++|...|||||++++||+|+|.+++||| ||.|. +..||+||+||+||+| .+|.+|
T Consensus 334 msq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVN----yDiP~------~skDYIHRvGRtaRaG--rsG~~I 401 (476)
T KOG0330|consen 334 MSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVN----YDIPT------HSKDYIHRVGRTARAG--RSGKAI 401 (476)
T ss_pred hhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEe----cCCCC------cHHHHHHHcccccccC--CCcceE
Confidence 99999999999999999999999999999999999999999 77665 6779999999999998 889999
Q ss_pred EEcCCCcHHHHHHh---hcCCCc
Q 000129 884 IITGHSELRYYLSL---MNQQLP 903 (2114)
Q Consensus 884 il~~~~e~~~~~~l---l~~~~p 903 (2114)
.++++-+.+.|.++ +...+|
T Consensus 402 tlVtqyDve~~qrIE~~~gkkl~ 424 (476)
T KOG0330|consen 402 TLVTQYDVELVQRIEHALGKKLP 424 (476)
T ss_pred EEEehhhhHHHHHHHHHHhcCCC
Confidence 99999888877763 454444
No 20
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=7.6e-45 Score=455.83 Aligned_cols=658 Identities=24% Similarity=0.334 Sum_probs=444.2
Q ss_pred CCChhhHhhc---CCCCCCCHHHHHHHH--HHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEE
Q 000129 481 EMPEWAQPAF---KGMTQLNRVQSRVYK--SALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVY 555 (2114)
Q Consensus 481 ~lp~~~~~~f---~g~~~l~~iQ~~~i~--~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~ 555 (2114)
-+|+.+.... +|+..+..+|.+|+. .++ +.+|+|..+||++|||+++.+-+++.+...+. +++.
T Consensus 206 ~~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~-e~~nliys~Pts~gktlvaeilml~~~l~~rr----------~~ll 274 (1008)
T KOG0950|consen 206 RLPTKVSHLYAKDKGILKLFEWQAECLSLPRLL-ERKNLIYSLPTSAGKTLVAEILMLREVLCRRR----------NVLL 274 (1008)
T ss_pred cCchHHHHHHHHhhhHHHHHHHHHHHhcchhhh-cccceEEeCCCccchHHHHHHHHHHHHHHHhh----------ceeE
Confidence 3455544443 788899999999984 444 77899999999999999999999998776532 6899
Q ss_pred EcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccc
Q 000129 556 VAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 556 iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l 635 (2114)
+.|..+.+++....+..++.++|+.|.+++|..... ...+...+.|||.||-..+.........+..+++||+||.|++
T Consensus 275 ilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~-~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi 353 (1008)
T KOG0950|consen 275 ILPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPE-KRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMI 353 (1008)
T ss_pred ecceeehhHHHHhhhhhhccccCCcchhhcccCCCC-CcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeee
Confidence 999999999999999999999999999999765543 3345778999999997666555544456777999999999999
Q ss_pred cc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEe-eccCchh
Q 000129 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIG-IQVKKPL 713 (2114)
Q Consensus 636 ~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~-~~~~~~~ 713 (2114)
+| +||..+|.++++++...... .+|+||||||+||..+++.||.+. ++...|||||+...... ......
T Consensus 354 ~d~~rg~~lE~~l~k~~y~~~~~--~~~iIGMSATi~N~~lL~~~L~A~------~y~t~fRPv~L~E~ik~G~~i~~~- 424 (1008)
T KOG0950|consen 354 GDKGRGAILELLLAKILYENLET--SVQIIGMSATIPNNSLLQDWLDAF------VYTTRFRPVPLKEYIKPGSLIYES- 424 (1008)
T ss_pred eccccchHHHHHHHHHHHhcccc--ceeEeeeecccCChHHHHHHhhhh------heecccCcccchhccCCCcccccc-
Confidence 99 79999999999997755433 489999999999999999999843 56778999999875532 111111
Q ss_pred HHHHHhhHHH---------------HHHHHHHhC-CCeEEEEecChHHHHHHHHHHHHHhhcccccccccc-cCchhHHH
Q 000129 714 QRFQLMNDLC---------------YEKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLK-EDSVSREI 776 (2114)
Q Consensus 714 ~~~~~~~~~~---------------~~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~-~~~~~~~~ 776 (2114)
.+...+.++. .....+... +.++||||++|+.|+.+|..+.........-..++. .+..+...
T Consensus 425 ~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~ 504 (1008)
T KOG0950|consen 425 SRNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISN 504 (1008)
T ss_pred hhhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHh
Confidence 0222111111 111222233 557999999999999999777654322111100110 00000000
Q ss_pred HHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCcc
Q 000129 777 LQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAW 856 (2114)
Q Consensus 777 l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~ 856 (2114)
........-+..|+..+++|++|||+|++.++|+.|+..|+.|.+.|++||+|+++|||+|+.+|||.. ||-. -
T Consensus 505 ~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIira--P~~g----~ 578 (1008)
T KOG0950|consen 505 LLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRA--PYVG----R 578 (1008)
T ss_pred HhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeC--Cccc----c
Confidence 111223345677999999999999999999999999999999999999999999999999999999972 2221 1
Q ss_pred ccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcHHHHHHhhcCCC-cccchhhHh----hHHHHHHHHhhccccChHHH
Q 000129 857 TELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQL-PIESQFVSK----LADQLNAEIVLGTVQNAKEA 931 (2114)
Q Consensus 857 ~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~~ll~~~~-pies~l~~~----l~d~l~~ei~~~~i~~~~~~ 931 (2114)
..++..+|.||+|||||+|.|+.|.+|+++...+...+..+++.+. |+-|++... +...+..-|+.|...+.+|.
T Consensus 579 ~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~~~~~~~~S~l~~e~~g~~~~~ilsvI~~~ia~t~~di 658 (1008)
T KOG0950|consen 579 EFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRELVNSPLKPLNSCLSNEVNGPILMAILSLISLKIAETAEDI 658 (1008)
T ss_pred chhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHHHhccccccccccccccccccceeehhhhcchhhhhHHHH
Confidence 3468899999999999999999999999999999888888888776 566666431 11234455677777889999
Q ss_pred HHHHHhhHHHHhhccCCcccCCCcccccccchhhhhhHHHHHHHH-HHHhHCCCcc-cccCCCccccChhHHHHhhcccc
Q 000129 932 CNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAA-TILDRNNLVK-YDRKSGYFQVTDLGRIASYYYIS 1009 (2114)
Q Consensus 932 ~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~al-~~L~~~~~i~-~~~~~~~~~~T~lG~i~s~~yi~ 1009 (2114)
..+...|+++.... |..-....+ .+.+.. .+..+. ..+-+..+|. -........+|+||+..-.-.++
T Consensus 659 ~~~va~tl~s~q~~--~~~~~~~le-~~s~ql-------~~~~~~~d~~l~~d~i~~~~~~~~~~~~t~Lg~a~f~~~~~ 728 (1008)
T KOG0950|consen 659 LHFVAVTLLSAQEK--PENVREQLE-MESDQL-------VINDFKSDQLLEKDFIYKKQIENLRENITRLGRACFNAGSD 728 (1008)
T ss_pred HHHHHHhhhhcccc--hhhhhhccc-chhhhh-------ccchhhHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCC
Confidence 99999998876532 111111111 000000 001111 1222222222 00111112388999987666666
Q ss_pred cccHHHHHhhcCCC----------------------CCHHHHHHHhhCCccCCCCcCChhHHHHHHHHh-------ccCC
Q 000129 1010 HGTISTYNEHLKPT----------------------MGDIELCRLFSLSEEFKYVTVRQDEKMELAKLL-------DRVP 1060 (2114)
Q Consensus 1010 ~~t~~~~~~~l~~~----------------------~~~~~~l~i~s~s~ef~~i~~r~~e~~~l~~l~-------~~~~ 1060 (2114)
+.-...+...++.. +...+.+..+++ |. .+.+.|+. +.++. .++-
T Consensus 729 ~~~a~~l~~~L~~~~~~~vle~~lh~lylvtP~~~~~~~~dwli~f~i---~~--~L~~~~~~-~~~~~G~~e~fi~~~~ 802 (1008)
T KOG0950|consen 729 PEVANILFADLKKSLPQLVLESSLHLLYLVTPYLEVMNDIDWLIYFQI---YH--TLPSPEQK-LAKLLGVIESFIEKCV 802 (1008)
T ss_pred hhhhHHHHHHHHHhhhccccccccceeeeecchHhhcccccHHHHHHH---Hh--cCCcHHHH-HHhhhchHHHHHHHhh
Confidence 55443332222211 111122211111 00 11122222 11111 1110
Q ss_pred C-CCCCCCCCh----hHHHHHHHHHHHhcccC----CCCccc-chHHHHHHhHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Q 000129 1061 I-PVKESLEEP----SAKINVLLQAYISQLKL----EGLSLT-SDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLS 1130 (2114)
Q Consensus 1061 ~-~~~~~~~~~----~~K~~~llq~~i~~~~~----~~~~l~-~d~~~i~~~a~rl~~a~~ei~~~~~~~~~~~~~~~l~ 1130 (2114)
. .......+. ..=+...||.+++..++ ++|... +=+...+++|.+...++.-+|.+.+|.......-++-
T Consensus 803 ~gqs~~~~~~~~~~~r~y~~l~L~~li~espi~~V~~kYk~~rg~lqall~~a~~~a~~It~Fce~l~w~~~~~l~~~~~ 882 (1008)
T KOG0950|consen 803 SGQSVRNLQNVQKRKRLYVALALQKLINESPIRTVAEKYKVERGRLQALLSNASSFASLITFFCESIQWFPLRALLSEFY 882 (1008)
T ss_pred hccccccccchhHHHHHHHHHHHHHHHhhCcHHHHHHHhCchHHHHHHHHhcchhHHHHHHHHHHHhhhcchHHHHHHHH
Confidence 0 000001111 12267789999999887 456555 4556788999999999999999999984444444566
Q ss_pred HHHHccccCCCCccccCCCCCHHHHHHHHhCCC-chhhhccCChHHhhhhhc
Q 000129 1131 KMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF-AWERYYDLSPQELGELIR 1181 (2114)
Q Consensus 1131 ~~~~~~~w~~~~~l~q~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~ 1181 (2114)
+++..+.-.+..||..+|++...++++|+.+|+ ++.+|..-++.++..-+.
T Consensus 883 ~rl~~g~~~eL~~Lmrv~~~~~~RAr~lf~Agf~tv~~iA~a~p~klvkel~ 934 (1008)
T KOG0950|consen 883 GRLSFGGHAELIPLMRVPDVKAERARQLFKAGFTSVGSIANATPEKLVKELP 934 (1008)
T ss_pred HHHhccchhhhhhhhcCchhHHHHHHHHHHhhccchHHHhcCChHHHHHHhh
Confidence 777777888899999999999999999999998 466666668887766553
No 21
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=9.7e-43 Score=474.60 Aligned_cols=414 Identities=23% Similarity=0.324 Sum_probs=293.5
Q ss_pred CCCChhhHhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 480 SEMPEWAQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 480 ~~lp~~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
+.|++.+++.| .+|..|||+|.++++.++.+ +|++++||||||||++|++|+++.+...... + ....++++|||+|
T Consensus 16 ~~l~~~v~~~~~~~~~~~tpiQ~~Ai~~il~g-~nvli~APTGSGKTlaa~Lpil~~l~~~~~~-~-~~~~~~~~LyIsP 92 (876)
T PRK13767 16 DLLRPYVREWFKEKFGTFTPPQRYAIPLIHEG-KNVLISSPTGSGKTLAAFLAIIDELFRLGRE-G-ELEDKVYCLYVSP 92 (876)
T ss_pred hhcCHHHHHHHHHccCCCCHHHHHHHHHHHcC-CCEEEECCCCCcHHHHHHHHHHHHHHhhccc-c-CCCCCeEEEEEcC
Confidence 45677777777 57899999999999997665 5799999999999999999999988753211 1 0124578999999
Q ss_pred cHHHHHHHHHHHHHhh-----------ccC-CcEEEEEeCCCccChhh---hccceEEEcCHhHHHHHHhccCCCccccc
Q 000129 559 MKALVAEVVGNLSNRL-----------QMY-DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQL 623 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~-----------~~~-gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~d~l~r~~~~~~~l~~ 623 (2114)
+|||+.|+++++...+ ... ++++...+||.+...+. ...++|+|||||++..+.+.......+++
T Consensus 93 traLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~ 172 (876)
T PRK13767 93 LRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRT 172 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhc
Confidence 9999999998766422 122 78899999998765542 34789999999999776655433346789
Q ss_pred ccEEEEeccccccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccc----cCceEeecCCc-cc
Q 000129 624 VKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNL----EKGLFYFDNSY-RP 697 (2114)
Q Consensus 624 v~liIiDEaH~l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~----~~~~~~f~~~~-rp 697 (2114)
+++|||||+|.+.+ .||..++.++.++.... ....|+||+|||++|.++++.|+.... ...+......+ ++
T Consensus 173 l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~---~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~ 249 (876)
T PRK13767 173 VKWVIVDEIHSLAENKRGVHLSLSLERLEELA---GGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKP 249 (876)
T ss_pred CCEEEEechhhhccCccHHHHHHHHHHHHHhc---CCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCcc
Confidence 99999999999987 69999999998886543 357899999999999999999997531 11122222221 22
Q ss_pred ccceeEEEeeccCchhHHHHHhhHHHHHHHHHHh-CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHH
Q 000129 698 VPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVA-GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREI 776 (2114)
Q Consensus 698 v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~ 776 (2114)
..+.... ..... .......+...++..+.+.. ..+++||||||++.|+.++..|+......
T Consensus 250 ~~i~v~~-p~~~l-~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~---------------- 311 (876)
T PRK13767 250 FDIKVIS-PVDDL-IHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEE---------------- 311 (876)
T ss_pred ceEEEec-cCccc-cccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhh----------------
Confidence 2111110 00000 00000111222333333333 26789999999999999999987632110
Q ss_pred HHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCcc
Q 000129 777 LQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAW 856 (2114)
Q Consensus 777 l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~ 856 (2114)
....++++|||+|++++|..+++.|++|.++|||||+++++|||+|++++||+ |+++.
T Consensus 312 ---------------~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~----~~~P~--- 369 (876)
T PRK13767 312 ---------------YDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVL----LGSPK--- 369 (876)
T ss_pred ---------------ccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEE----eCCCC---
Confidence 12357999999999999999999999999999999999999999999999998 66654
Q ss_pred ccCCHHHHHHhhcccCCCCCCCceEEEEEcCC-CcHHH---HHH-hhcC-CCcc--cchhhHhhHHHHHHHHhhccccCh
Q 000129 857 TELSPLDIMQMLGRAGRPQYDSYGEGIIITGH-SELRY---YLS-LMNQ-QLPI--ESQFVSKLADQLNAEIVLGTVQNA 928 (2114)
Q Consensus 857 ~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~-~e~~~---~~~-ll~~-~~pi--es~l~~~l~d~l~~ei~~~~i~~~ 928 (2114)
|+.+|+||+|||||.+ +..+.+++++.. .+.-. +.+ .... ..|+ ...-...|..|+.+.+..+ .-+.
T Consensus 370 ---sv~~ylQRiGRaGR~~-g~~~~g~ii~~~~~~l~e~~~~~~~~~~~~ie~~~~~~~~~dvl~q~i~~~~~~~-~~~~ 444 (876)
T PRK13767 370 ---SVSRLLQRIGRAGHRL-GEVSKGRIIVVDRDDLVECAVLLKKAREGKIDRVHIPKNPLDVLAQHIVGMAIER-PWDI 444 (876)
T ss_pred ---CHHHHHHhcccCCCCC-CCCCcEEEEEcCchhHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHcC-CCCH
Confidence 7899999999999864 233444444433 33221 111 1211 1122 2223456788888866654 5689
Q ss_pred HHHHHHHHhhHHHHhh
Q 000129 929 KEACNWIGYTYLYIRM 944 (2114)
Q Consensus 929 ~~~~~wl~~t~~~~r~ 944 (2114)
+++.+|+..||.|..+
T Consensus 445 ~~~~~~~~~~~~~~~l 460 (876)
T PRK13767 445 EEAYNIVRRAYPYRDL 460 (876)
T ss_pred HHHHHHHhccCCcccC
Confidence 9999999999988653
No 22
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=9.8e-43 Score=449.54 Aligned_cols=450 Identities=23% Similarity=0.297 Sum_probs=331.8
Q ss_pred cCCCChhhHhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc
Q 000129 479 ISEMPEWAQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA 557 (2114)
Q Consensus 479 i~~lp~~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~ia 557 (2114)
.+.||++++++| ..|.+|||.|.+||+.+. .++|+||+||||||||++|.||++..+.... +....++..+|||+
T Consensus 5 ~~~l~~~v~~~~~~~~~~~t~~Q~~a~~~i~-~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~---~~~~~~~i~~lYIs 80 (814)
T COG1201 5 FNILDPRVREWFKRKFTSLTPPQRYAIPEIH-SGENVLIIAPTGSGKTEAAFLPVINELLSLG---KGKLEDGIYALYIS 80 (814)
T ss_pred hhhcCHHHHHHHHHhcCCCCHHHHHHHHHHh-CCCceEEEcCCCCChHHHHHHHHHHHHHhcc---CCCCCCceEEEEeC
Confidence 466899999999 559999999999999987 4577999999999999999999999998752 11123568999999
Q ss_pred ccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccc
Q 000129 558 PMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL 634 (2114)
Q Consensus 558 P~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~ 634 (2114)
|.|||..++.+++...+..+|+.|..-|||++...++ .+.+||++||||.+..+.-...-+..+.++++|||||+|.
T Consensus 81 PLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHe 160 (814)
T COG1201 81 PLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHA 160 (814)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhh
Confidence 9999999999999999999999999999999876654 4678999999999976665545567899999999999999
Q ss_pred ccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchh
Q 000129 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713 (2114)
Q Consensus 635 l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~ 713 (2114)
+.+ .||..+..-+.|+... ....|.||||||+.+.+++++||.........+-....++..+............
T Consensus 161 l~~sKRG~~Lsl~LeRL~~l----~~~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~- 235 (814)
T COG1201 161 LAESKRGVQLALSLERLREL----AGDFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYD- 235 (814)
T ss_pred hhccccchhhhhhHHHHHhh----CcccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccc-
Confidence 976 7999999988888543 2288999999999999999999987631111221122222222211111110000
Q ss_pred HHHHHhhHHHHHHHHHHhC-CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhh
Q 000129 714 QRFQLMNDLCYEKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDL 792 (2114)
Q Consensus 714 ~~~~~~~~~~~~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~l 792 (2114)
.......+..+.+..+ ...+|||+|||..|+.++..|+..+.
T Consensus 236 ---~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~---------------------------------- 278 (814)
T COG1201 236 ---EELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGP---------------------------------- 278 (814)
T ss_pred ---cchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcC----------------------------------
Confidence 1111223333333333 34899999999999999999886531
Q ss_pred ccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccC
Q 000129 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (2114)
Q Consensus 793 l~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAG 872 (2114)
..+..|||+++++.|..+|+.|++|+++++|||++|+-|||+.+++.||+ |+.|+ |+..++||+||+|
T Consensus 279 --~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq----~~SP~------sV~r~lQRiGRsg 346 (814)
T COG1201 279 --DIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQ----LGSPK------SVNRFLQRIGRAG 346 (814)
T ss_pred --CceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEE----eCCcH------HHHHHhHhccccc
Confidence 35899999999999999999999999999999999999999999999998 76665 8899999999999
Q ss_pred CCCCCCceEEEEEcCCCcHHHHHH------hhcC---CCcccchhhHhhHHHHHHHHhhccccChHHHHHHHHhhHHHHh
Q 000129 873 RPQYDSYGEGIIITGHSELRYYLS------LMNQ---QLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIR 943 (2114)
Q Consensus 873 R~g~d~~G~~iil~~~~e~~~~~~------ll~~---~~pies~l~~~l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~~r 943 (2114)
+. .+...++++++.+- .+.+.. .+.. ..++.-.-...|..++++.+... .-+.+++.+.+..+|.|..
T Consensus 347 Hr-~~~~Skg~ii~~~r-~dllE~~vi~~~a~~g~le~~~i~~~~LDVLaq~ivg~~~~~-~~~~~~~y~~vrraypy~~ 423 (814)
T COG1201 347 HR-LGEVSKGIIIAEDR-DDLLECLVLADLALEGKLERIKIPKNPLDVLAQQIVGMALEK-VWEVEEAYRVVRRAYPYAD 423 (814)
T ss_pred cc-cCCcccEEEEecCH-HHHHHHHHHHHHHHhCCcccCCCCCcchhHHHHHHHHHHhhC-cCCHHHHHHHHHhcccccc
Confidence 84 56778999998872 222222 1221 23444444567777888777766 6678888888888887753
Q ss_pred hccCCcccCCCcccccccchhhhhhHHHHHHHHHHHhH--CCCcccccCCCccccChhHHHHhhcccccccH
Q 000129 944 MLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDR--NNLVKYDRKSGYFQVTDLGRIASYYYISHGTI 1013 (2114)
Q Consensus 944 ~~~np~~y~~~~~~~~~~~~l~~~~~~li~~al~~L~~--~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~ 1013 (2114)
++. +-....++.|.. .+.++...... -..+.-.....+||.+..|+
T Consensus 424 ---------L~~--------------e~f~~v~~~l~~~~~~~~~i~~~~~-~~~~~~~~~~~~y~~n~~tI 471 (814)
T COG1201 424 ---------LSR--------------EDFRLVLRYLAGEKNVYAKIWLDED-GLFGRGKGTRMIYYMNYGTI 471 (814)
T ss_pred ---------CCH--------------HHHHHHHHHHhhcccceeEEeecCc-ceeccCccceeeeeeccccc
Confidence 222 224566777777 66666543222 12333233445566655554
No 23
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.5e-43 Score=399.00 Aligned_cols=342 Identities=22% Similarity=0.300 Sum_probs=267.5
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q 1405 (2114)
+..+.++++-. +|+.|++||++++|.++.+++ ||..|.||||||.+|.+||++++.+.. ..+.+++++||||||.|
T Consensus 68 v~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~d-vIglAeTGSGKT~afaLPIl~~LL~~p--~~~~~lVLtPtRELA~Q 144 (476)
T KOG0330|consen 68 VHPELLEACQELGWKKPTKIQSEAIPVALGGRD-VIGLAETGSGKTGAFALPILQRLLQEP--KLFFALVLTPTRELAQQ 144 (476)
T ss_pred cCHHHHHHHHHhCcCCCchhhhhhcchhhCCCc-EEEEeccCCCchhhhHHHHHHHHHcCC--CCceEEEecCcHHHHHH
Confidence 33344444433 699999999999999999777 999999999999999999999999842 33699999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcccc---hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCc
Q 000129 1406 RYRDWEIKFGQGLGMRVVELTGETAMD---LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP 1482 (2114)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~l~G~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~ 1482 (2114)
+...+. .++...|+++..+.|+.... ....+++||+||||+++..++.+.+ ...+..++++|+||||++.+..
T Consensus 145 I~e~fe-~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tk-gf~le~lk~LVlDEADrlLd~d-- 220 (476)
T KOG0330|consen 145 IAEQFE-ALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTK-GFSLEQLKFLVLDEADRLLDMD-- 220 (476)
T ss_pred HHHHHH-HhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhcc-CccHHHhHHHhhchHHhhhhhh--
Confidence 999998 78888899999999998765 3455678999999999887776533 3368899999999999998765
Q ss_pred hHHHHHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHH---hc
Q 000129 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQ---AM 1559 (2114)
Q Consensus 1483 ~le~i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~---~~ 1559 (2114)
+...+.+|...++...|.+++|||++.. +.+..-+.. .+|+.+.+.-.....++....+. ..
T Consensus 221 ----F~~~ld~ILk~ip~erqt~LfsATMt~k--v~kL~rasl---------~~p~~v~~s~ky~tv~~lkQ~ylfv~~k 285 (476)
T KOG0330|consen 221 ----FEEELDYILKVIPRERQTFLFSATMTKK--VRKLQRASL---------DNPVKVAVSSKYQTVDHLKQTYLFVPGK 285 (476)
T ss_pred ----hHHHHHHHHHhcCccceEEEEEeecchh--hHHHHhhcc---------CCCeEEeccchhcchHHhhhheEecccc
Confidence 4455555666668899999999999753 222222221 12222222111111111111111 11
Q ss_pred CHHHH-HHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEe
Q 000129 1560 TKPTF-TAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGY 1638 (2114)
Q Consensus 1560 ~~~~~-~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~ 1638 (2114)
.++.| ..+++. ..++++||||++...++.++..| ..+++....
T Consensus 286 ~K~~yLV~ll~e-~~g~s~iVF~~t~~tt~~la~~L-----------------------------------~~lg~~a~~ 329 (476)
T KOG0330|consen 286 DKDTYLVYLLNE-LAGNSVIVFCNTCNTTRFLALLL-----------------------------------RNLGFQAIP 329 (476)
T ss_pred ccchhHHHHHHh-hcCCcEEEEEeccchHHHHHHHH-----------------------------------HhcCcceec
Confidence 22222 234444 56799999999999998888555 235566788
Q ss_pred ecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCc
Q 000129 1639 LHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNS 1718 (2114)
Q Consensus 1639 ~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~ 1718 (2114)
+||.|++..|.-.++.|++|...|||||++++||+|+|.+.+|| ||++|.+..+|+||+||+||+ +.+
T Consensus 330 LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VV----------NyDiP~~skDYIHRvGRtaRa--Grs 397 (476)
T KOG0330|consen 330 LHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVV----------NYDIPTHSKDYIHRVGRTARA--GRS 397 (476)
T ss_pred ccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEE----------ecCCCCcHHHHHHHccccccc--CCC
Confidence 99999999999999999999999999999999999999999999 999999999999999999999 589
Q ss_pred eEEEEEeecCcHHHHHHHHH
Q 000129 1719 GKCVILCHAPRKEYYKKFLR 1738 (2114)
Q Consensus 1719 G~~iil~~~~~~~~~~~~lR 1738 (2114)
|+++.+++..+.+.|.++..
T Consensus 398 G~~ItlVtqyDve~~qrIE~ 417 (476)
T KOG0330|consen 398 GKAITLVTQYDVELVQRIEH 417 (476)
T ss_pred cceEEEEehhhhHHHHHHHH
Confidence 99999999999898888873
No 24
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-42 Score=422.77 Aligned_cols=344 Identities=21% Similarity=0.292 Sum_probs=260.0
Q ss_pred ChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccH
Q 000129 483 PEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMK 560 (2114)
Q Consensus 483 p~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~r 560 (2114)
++....++ .||+.|+|||.++++.++.+.+ ++..|.||||||++|++|++.++..+.. .....+++++|+++|||
T Consensus 99 s~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD-~v~iA~TGSGKTLay~lP~i~~l~~~~~--~~~~~~~P~vLVL~PTR 175 (519)
T KOG0331|consen 99 SEELMKALKEQGFEKPTPIQAQGWPIALSGRD-LVGIARTGSGKTLAYLLPAIVHLNNEQG--KLSRGDGPIVLVLAPTR 175 (519)
T ss_pred cHHHHHHHHhcCCCCCchhhhcccceeccCCc-eEEEeccCCcchhhhhhHHHHHHHhccc--cccCCCCCeEEEEcCcH
Confidence 33334443 7999999999999999999866 9999999999999999999999986321 11123578999999999
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHH-HHHHhccCCCcccccccEEEEecccccc
Q 000129 561 ALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2114)
Q Consensus 561 aLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (2114)
+||.|+.+.+.++...++++..+++|+.+...+. ....+|+|+||+++ |.+.... ..++++.++|+||||.|.
T Consensus 176 ELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~---~~l~~v~ylVLDEADrMl 252 (519)
T KOG0331|consen 176 ELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGS---LNLSRVTYLVLDEADRML 252 (519)
T ss_pred HHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCC---ccccceeEEEeccHHhhh
Confidence 9999999999999888889999999999887764 35789999999998 7666655 467899999999999999
Q ss_pred c-CCchhHHHHHHHHHHHHhhccccccEEEEccccCC-hHHHH-HHHhccccCceEeecCCcc-cccceeEEEeeccCch
Q 000129 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVA-LFLRVNLEKGLFYFDNSYR-PVPLSQQYIGIQVKKP 712 (2114)
Q Consensus 637 d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn-~~dva-~~l~~~~~~~~~~f~~~~r-pv~l~~~~~~~~~~~~ 712 (2114)
| ++.+.++.|+.++ .++..|.+++|||.|. ...++ .|+. ++....+....... ...+.+....+. .
T Consensus 253 dmGFe~qI~~Il~~i------~~~~rQtlm~saTwp~~v~~lA~~fl~-~~~~i~ig~~~~~~a~~~i~qive~~~---~ 322 (519)
T KOG0331|consen 253 DMGFEPQIRKILSQI------PRPDRQTLMFSATWPKEVRQLAEDFLN-NPIQINVGNKKELKANHNIRQIVEVCD---E 322 (519)
T ss_pred ccccHHHHHHHHHhc------CCCcccEEEEeeeccHHHHHHHHHHhc-CceEEEecchhhhhhhcchhhhhhhcC---H
Confidence 9 7999999888775 2344489999999984 22232 2333 22111000000001 111111111111 1
Q ss_pred hHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhh
Q 000129 713 LQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDL 792 (2114)
Q Consensus 713 ~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~l 792 (2114)
..+...+..++ ..+. ...++++||||+|++.|.++++.++..++.
T Consensus 323 ~~K~~~l~~lL-~~~~-~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~--------------------------------- 367 (519)
T KOG0331|consen 323 TAKLRKLGKLL-EDIS-SDSEGKVIIFCETKRTCDELARNLRRKGWP--------------------------------- 367 (519)
T ss_pred HHHHHHHHHHH-HHHh-ccCCCcEEEEecchhhHHHHHHHHHhcCcc---------------------------------
Confidence 11112122211 1121 223679999999999999999999875433
Q ss_pred ccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccC
Q 000129 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (2114)
Q Consensus 793 l~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAG 872 (2114)
...+||+.++.+|..+++.|++|...|||||+++|||+|+|+|++||+ ||+|. ++.+|+||+||+|
T Consensus 368 ----a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVIn----ydfP~------~vEdYVHRiGRTG 433 (519)
T KOG0331|consen 368 ----AVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVIN----YDFPN------NVEDYVHRIGRTG 433 (519)
T ss_pred ----eeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEe----CCCCC------CHHHHHhhcCccc
Confidence 445599999999999999999999999999999999999999999999 88887 8899999999999
Q ss_pred CCCCCCceEEEEEcCCCcHHH
Q 000129 873 RPQYDSYGEGIIITGHSELRY 893 (2114)
Q Consensus 873 R~g~d~~G~~iil~~~~e~~~ 893 (2114)
|.| +.|.++.+.+..+...
T Consensus 434 Ra~--~~G~A~tfft~~~~~~ 452 (519)
T KOG0331|consen 434 RAG--KKGTAITFFTSDNAKL 452 (519)
T ss_pred cCC--CCceEEEEEeHHHHHH
Confidence 977 8899999998866543
No 25
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1e-41 Score=455.59 Aligned_cols=354 Identities=21% Similarity=0.218 Sum_probs=267.6
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
.||+++.+++ .||++|+++|.++++.++.+ +|++++||||||||++|.+|+++.+... .+.++|||+|
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G-~nvvv~apTGSGKTla~~LPiL~~l~~~---------~~~~aL~l~P 89 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAG-RHVVVATGTASGKSLAYQLPVLSALADD---------PRATALYLAP 89 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCC-CCEEEECCCCCcHHHHHHHHHHHHHhhC---------CCcEEEEEcC
Confidence 4677777777 68999999999999998766 5699999999999999999999998653 2358999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh--hccceEEEcCHhHHH-HHHhc-cCCCcccccccEEEEecccc
Q 000129 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ--IEETQIIVTTPEKWD-IITRK-SGDRTYTQLVKLLIIDEIHL 634 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~--~~~~~IiV~TPek~d-~l~r~-~~~~~~l~~v~liIiDEaH~ 634 (2114)
||||+.|+.+.++++. ..++++..++|+.....+. ..+++|+|+||+++. .+... ......++++++|||||+|.
T Consensus 90 traLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~ 168 (742)
T TIGR03817 90 TKALAADQLRAVRELT-LRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHS 168 (742)
T ss_pred hHHHHHHHHHHHHHhc-cCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhh
Confidence 9999999999999865 4578999999998755432 356899999999874 22221 11123578999999999999
Q ss_pred cccCCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeecc-----
Q 000129 635 LHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQV----- 709 (2114)
Q Consensus 635 l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~----- 709 (2114)
+.+.+|..+..++.++.+.....+.+.|+|++|||++|..+++.++...+ ....+....|.......+-...
T Consensus 169 ~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~---~~~i~~~~~~~~~~~~~~~~p~~~~~~ 245 (742)
T TIGR03817 169 YRGVFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAAAASRLIGAP---VVAVTEDGSPRGARTVALWEPPLTELT 245 (742)
T ss_pred ccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCC---eEEECCCCCCcCceEEEEecCCccccc
Confidence 98789999999999998877777778999999999999888887775432 3334443333332221111110
Q ss_pred -Cc--hhHH--HHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhccc
Q 000129 710 -KK--PLQR--FQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMV 784 (2114)
Q Consensus 710 -~~--~~~~--~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~ 784 (2114)
.. ...+ .......+...+ . .+.++||||+||+.|+.++..|+.......
T Consensus 246 ~~~~~~~r~~~~~~~~~~l~~l~-~--~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~----------------------- 299 (742)
T TIGR03817 246 GENGAPVRRSASAEAADLLADLV-A--EGARTLTFVRSRRGAELVAAIARRLLGEVD----------------------- 299 (742)
T ss_pred cccccccccchHHHHHHHHHHHH-H--CCCCEEEEcCCHHHHHHHHHHHHHHHHhhc-----------------------
Confidence 00 0000 001111222211 1 267999999999999999998876421100
Q ss_pred CcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHH
Q 000129 785 KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDI 864 (2114)
Q Consensus 785 ~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~ 864 (2114)
..+..++..|||||++++|..+++.|++|++++||||+++++|||+|++++||+ |+.+. +..+|
T Consensus 300 ------~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~----~~~P~------s~~~y 363 (742)
T TIGR03817 300 ------PDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVI----AGFPG------TRASL 363 (742)
T ss_pred ------cccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEE----eCCCC------CHHHH
Confidence 012345788999999999999999999999999999999999999999999999 66654 78899
Q ss_pred HHhhcccCCCCCCCceEEEEEcCCCcHH
Q 000129 865 MQMLGRAGRPQYDSYGEGIIITGHSELR 892 (2114)
Q Consensus 865 ~Qr~GRAGR~g~d~~G~~iil~~~~e~~ 892 (2114)
+||+|||||.| ..|.+++++.++..+
T Consensus 364 ~qRiGRaGR~G--~~g~ai~v~~~~~~d 389 (742)
T TIGR03817 364 WQQAGRAGRRG--QGALVVLVARDDPLD 389 (742)
T ss_pred HHhccccCCCC--CCcEEEEEeCCChHH
Confidence 99999999987 669999998765433
No 26
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.9e-41 Score=414.12 Aligned_cols=335 Identities=20% Similarity=0.298 Sum_probs=261.3
Q ss_pred HHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhc----cCCCceEEEEEcccHHHHHH
Q 000129 1331 LYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA----SETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1331 ~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~----~~~~~~k~l~I~Ptr~La~q 1405 (2114)
....+.. ||..|+|||.+.++.++.+.+ ++..|.||||||++|++|++.++... ..++++++|+++||||||.|
T Consensus 102 ~~~~lk~~g~~~PtpIQaq~wp~~l~GrD-~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~Q 180 (519)
T KOG0331|consen 102 LMKALKEQGFEKPTPIQAQGWPIALSGRD-LVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQ 180 (519)
T ss_pred HHHHHHhcCCCCCchhhhcccceeccCCc-eEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHH
Confidence 3344433 799999999999999999777 99999999999999999999999862 23345799999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcccc--hhhccC-CcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCc
Q 000129 1406 RYRDWEIKFGQGLGMRVVELTGETAMD--LKLLEK-GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP 1482 (2114)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~l~G~~~~~--~~~l~~-~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~ 1482 (2114)
+.+.+. .|+..++++..+++|+.+.. .+.+++ .+|+|+||+++..++.. ....++++.++|+||||++.+.+
T Consensus 181 V~~~~~-~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~--g~~~l~~v~ylVLDEADrMldmG-- 255 (519)
T KOG0331|consen 181 VQAEAR-EFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEE--GSLNLSRVTYLVLDEADRMLDMG-- 255 (519)
T ss_pred HHHHHH-HHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHc--CCccccceeEEEeccHHhhhccc--
Confidence 999998 68887788899999998765 344555 59999999999999887 56679999999999999999877
Q ss_pred hHHHHHHHHHHHHhhcC-CCceEEEEcccCCC-hhHHHH-HhcCCCCceeecCCCCCccCcEEEEeccc----ccchHHH
Q 000129 1483 VLEVIVSRMRYIASQVE-NKIRIVALSTSLAN-AKDLGE-WIGATSHGLFNFPPGVRPVPLEIHIQGVD----ITNFEAR 1555 (2114)
Q Consensus 1483 ~le~i~srl~~i~~~~~-~~~riV~lSATl~n-~~dla~-wl~~~~~~~~~f~~~~rpv~l~~~~~~~~----~~~~~~~ 1555 (2114)
+-..++.|..+++ ...|.+++|||.|. .+.++. +++ .+. .+.+-... ..+....
T Consensus 256 ----Fe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~-~~~--------------~i~ig~~~~~~a~~~i~qi 316 (519)
T KOG0331|consen 256 ----FEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLN-NPI--------------QINVGNKKELKANHNIRQI 316 (519)
T ss_pred ----cHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhc-Cce--------------EEEecchhhhhhhcchhhh
Confidence 6777777778874 44479999999986 345554 444 321 11111110 0001111
Q ss_pred HHh-----cCHHHHHHHHHHh-cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHH
Q 000129 1556 MQA-----MTKPTFTAIVQHA-KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLK 1629 (2114)
Q Consensus 1556 ~~~-----~~~~~~~~i~~~l-~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~ 1629 (2114)
... ........+..+. ...+++||||+|++.|..++..+..
T Consensus 317 ve~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~--------------------------------- 363 (519)
T KOG0331|consen 317 VEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRR--------------------------------- 363 (519)
T ss_pred hhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHh---------------------------------
Confidence 100 0111112222221 3567899999999999999876622
Q ss_pred HHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcc
Q 000129 1630 ATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGH 1709 (2114)
Q Consensus 1630 ~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GR 1709 (2114)
..+++..+||+.++.+|..+++.|++|+..|||||++++||+|+|++.+|| +|+.|.++.+|+||+||
T Consensus 364 --~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVI----------nydfP~~vEdYVHRiGR 431 (519)
T KOG0331|consen 364 --KGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVI----------NYDFPNNVEDYVHRIGR 431 (519)
T ss_pred --cCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEE----------eCCCCCCHHHHHhhcCc
Confidence 125688999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred cCCCCCCCceEEEEEeecCcHHHHHHHH
Q 000129 1710 ASRPLLDNSGKCVILCHAPRKEYYKKFL 1737 (2114)
Q Consensus 1710 AGR~~~~~~G~~iil~~~~~~~~~~~~l 1737 (2114)
+||+ +..|.++.|....+......+.
T Consensus 432 TGRa--~~~G~A~tfft~~~~~~a~~l~ 457 (519)
T KOG0331|consen 432 TGRA--GKKGTAITFFTSDNAKLARELI 457 (519)
T ss_pred cccC--CCCceEEEEEeHHHHHHHHHHH
Confidence 9998 7899999999987765554444
No 27
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1e-40 Score=445.94 Aligned_cols=343 Identities=18% Similarity=0.240 Sum_probs=261.9
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
||+.|+++|.++++.++++ +|++++||||||||+||.+|+++.+.. .+. .++|||+||||||.|+++.++ .++ .
T Consensus 33 g~~~p~~~Q~~ai~~il~G-~nvvv~apTGSGKTla~~LPiL~~l~~-~~~--~~aL~l~PtraLa~q~~~~l~-~l~-~ 106 (742)
T TIGR03817 33 GIHRPWQHQARAAELAHAG-RHVVVATGTASGKSLAYQLPVLSALAD-DPR--ATALYLAPTKALAADQLRAVR-ELT-L 106 (742)
T ss_pred CCCcCCHHHHHHHHHHHCC-CCEEEECCCCCcHHHHHHHHHHHHHhh-CCC--cEEEEEcChHHHHHHHHHHHH-Hhc-c
Confidence 7999999999999999875 569999999999999999999999876 233 499999999999999999998 565 3
Q ss_pred CCcEEEEEcCCcccchh--hccCCcEEEEChhhHHH-HHh---hhcccccccceeEEEecccccccCCCCchHHHHHHHH
Q 000129 1418 LGMRVVELTGETAMDLK--LLEKGQIIISTPEKWDA-LSR---RWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRM 1491 (2114)
Q Consensus 1418 ~g~~v~~l~G~~~~~~~--~l~~~~IIV~TPe~l~~-l~r---~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl 1491 (2114)
.++++..++|+.+.+.+ ...+++|+|+||+++.. ++. +|. ..++++++||+||||.+.+..|..+..++.|+
T Consensus 107 ~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~--~~l~~l~~vViDEah~~~g~fg~~~~~il~rL 184 (742)
T TIGR03817 107 RGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWA--RFLRRLRYVVIDECHSYRGVFGSHVALVLRRL 184 (742)
T ss_pred CCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHH--HHHhcCCEEEEeChhhccCccHHHHHHHHHHH
Confidence 47899999999876533 23457999999999863 222 232 34889999999999999877888999999999
Q ss_pred HHHHhhcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccc-cchHH----HH-HhcCHHHHH
Q 000129 1492 RYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDI-TNFEA----RM-QAMTKPTFT 1565 (2114)
Q Consensus 1492 ~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~-~~~~~----~~-~~~~~~~~~ 1565 (2114)
+.+....+.+.|+|++|||++|..++++++...+.. .......|..........+. ..... .. .........
T Consensus 185 ~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~--~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~ 262 (742)
T TIGR03817 185 RRLCARYGASPVFVLASATTADPAAAASRLIGAPVV--AVTEDGSPRGARTVALWEPPLTELTGENGAPVRRSASAEAAD 262 (742)
T ss_pred HHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCeE--EECCCCCCcCceEEEEecCCccccccccccccccchHHHHHH
Confidence 999888888899999999999998888776544322 22222223221111110000 00000 00 000011222
Q ss_pred HHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCH
Q 000129 1566 AIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNK 1645 (2114)
Q Consensus 1566 ~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~ 1645 (2114)
.+...+..+.++||||+||+.|+.++..|....... ...+..+|..||||+++
T Consensus 263 ~l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~---------------------------~~~l~~~v~~~hgg~~~ 315 (742)
T TIGR03817 263 LLADLVAEGARTLTFVRSRRGAELVAAIARRLLGEV---------------------------DPDLAERVAAYRAGYLP 315 (742)
T ss_pred HHHHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhh---------------------------ccccccchhheecCCCH
Confidence 333333457899999999999999998775422100 01124568899999999
Q ss_pred HHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEe
Q 000129 1646 TDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILC 1725 (2114)
Q Consensus 1646 ~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~ 1725 (2114)
++|+.+++.|++|++++||||+++++|||+|++.+|| +++.|.++.+|+||+|||||. +..|.+++++
T Consensus 316 ~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI----------~~~~P~s~~~y~qRiGRaGR~--G~~g~ai~v~ 383 (742)
T TIGR03817 316 EDRRELERALRDGELLGVATTNALELGVDISGLDAVV----------IAGFPGTRASLWQQAGRAGRR--GQGALVVLVA 383 (742)
T ss_pred HHHHHHHHHHHcCCceEEEECchHhccCCcccccEEE----------EeCCCCCHHHHHHhccccCCC--CCCcEEEEEe
Confidence 9999999999999999999999999999999999999 899999999999999999998 5789999998
Q ss_pred ecCc
Q 000129 1726 HAPR 1729 (2114)
Q Consensus 1726 ~~~~ 1729 (2114)
.+..
T Consensus 384 ~~~~ 387 (742)
T TIGR03817 384 RDDP 387 (742)
T ss_pred CCCh
Confidence 7543
No 28
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.4e-40 Score=432.95 Aligned_cols=346 Identities=21% Similarity=0.273 Sum_probs=256.0
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
.||+++...+ .||+.|||+|.++++.++.+ +|++++||||||||++|++|++..+...... ......++++|||+|
T Consensus 127 ~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g-~dviv~ApTGSGKTlayllPil~~l~~~~~~-~~~~~~~~~aLIL~P 204 (518)
T PLN00206 127 GLPPKLLLNLETAGYEFPTPIQMQAIPAALSG-RSLLVSADTGSGKTASFLVPIISRCCTIRSG-HPSEQRNPLAMVLTP 204 (518)
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CCEEEEecCCCCccHHHHHHHHHHHHhhccc-cccccCCceEEEEeC
Confidence 4688888877 69999999999999999866 5699999999999999999999887643211 111224679999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHH-HHHHhccCCCcccccccEEEEecccc
Q 000129 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~ 634 (2114)
||+||.|+.+.++.+....++++..+.|+.....+. ..+++|+|+||+++ +.+.+. ...++++++|||||||+
T Consensus 205 TreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~---~~~l~~v~~lViDEad~ 281 (518)
T PLN00206 205 TRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKH---DIELDNVSVLVLDEVDC 281 (518)
T ss_pred CHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcC---CccchheeEEEeecHHH
Confidence 999999999999888777888888888877655432 35689999999998 555554 25678999999999999
Q ss_pred ccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCC-hHHHHHHHhccccCceEeecCCccccc-ceeEEEeeccCc
Q 000129 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYRPVP-LSQQYIGIQVKK 711 (2114)
Q Consensus 635 l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn-~~dva~~l~~~~~~~~~~f~~~~rpv~-l~~~~~~~~~~~ 711 (2114)
|.+ ++.+.+..++..+ +..|++++|||+|+ .+.++.++..++ ..+......++.. +.+.+..+....
T Consensus 282 ml~~gf~~~i~~i~~~l--------~~~q~l~~SATl~~~v~~l~~~~~~~~--~~i~~~~~~~~~~~v~q~~~~~~~~~ 351 (518)
T PLN00206 282 MLERGFRDQVMQIFQAL--------SQPQVLLFSATVSPEVEKFASSLAKDI--ILISIGNPNRPNKAVKQLAIWVETKQ 351 (518)
T ss_pred HhhcchHHHHHHHHHhC--------CCCcEEEEEeeCCHHHHHHHHHhCCCC--EEEEeCCCCCCCcceeEEEEeccchh
Confidence 987 4555544443322 46799999999986 344555544321 1222333333322 222222222211
Q ss_pred hhHHHHHhhHHHHHHHHHHhC-CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhh
Q 000129 712 PLQRFQLMNDLCYEKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK 790 (2114)
Q Consensus 712 ~~~~~~~~~~~~~~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~ 790 (2114)
+.. .+++.+..... ..++||||+|+..+..++..|....
T Consensus 352 ---k~~----~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~--------------------------------- 391 (518)
T PLN00206 352 ---KKQ----KLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVT--------------------------------- 391 (518)
T ss_pred ---HHH----HHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhcc---------------------------------
Confidence 111 12222222211 4689999999999999988775421
Q ss_pred hhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcc
Q 000129 791 DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGR 870 (2114)
Q Consensus 791 ~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GR 870 (2114)
...+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||++. +..+|+||+||
T Consensus 392 ---g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~----~d~P~------s~~~yihRiGR 458 (518)
T PLN00206 392 ---GLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVII----FDMPN------TIKEYIHQIGR 458 (518)
T ss_pred ---CcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEE----eCCCC------CHHHHHHhccc
Confidence 123567899999999999999999999999999999999999999999999 77765 78999999999
Q ss_pred cCCCCCCCceEEEEEcCCCcHHHHHH
Q 000129 871 AGRPQYDSYGEGIIITGHSELRYYLS 896 (2114)
Q Consensus 871 AGR~g~d~~G~~iil~~~~e~~~~~~ 896 (2114)
|||.| ..|.++++++.++...+..
T Consensus 459 aGR~g--~~G~ai~f~~~~~~~~~~~ 482 (518)
T PLN00206 459 ASRMG--EKGTAIVFVNEEDRNLFPE 482 (518)
T ss_pred cccCC--CCeEEEEEEchhHHHHHHH
Confidence 99987 6799999998876554443
No 29
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-41 Score=397.43 Aligned_cols=347 Identities=21% Similarity=0.329 Sum_probs=276.0
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.||..|||||.++||.++.+.+ +..||-||||||.+|++|+|..+.-.+.. ....++|+++|||+|+.|++..+
T Consensus 199 lGy~~PTpIQ~a~IPvallgkD-Ica~A~TGsGKTAAF~lPiLERLlYrPk~-----~~~TRVLVL~PTRELaiQv~sV~ 272 (691)
T KOG0338|consen 199 LGYKKPTPIQVATIPVALLGKD-ICACAATGSGKTAAFALPILERLLYRPKK-----VAATRVLVLVPTRELAIQVHSVT 272 (691)
T ss_pred cCCCCCCchhhhcccHHhhcch-hhheecccCCchhhhHHHHHHHHhcCccc-----CcceeEEEEeccHHHHHHHHHHH
Confidence 3999999999999999999877 99999999999999999999988644321 24458999999999999999999
Q ss_pred HHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccccccc-CCchhHHH
Q 000129 571 SNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLES 645 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~ 645 (2114)
+++.....|.|+.+.|+.++..+. ...++|+|+||+++ |++- ++.. ..+.++.++|+|||++|++ .|...+..
T Consensus 273 ~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlr-Ns~s-f~ldsiEVLvlDEADRMLeegFademnE 350 (691)
T KOG0338|consen 273 KQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLR-NSPS-FNLDSIEVLVLDEADRMLEEGFADEMNE 350 (691)
T ss_pred HHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhc-cCCC-ccccceeEEEechHHHHHHHHHHHHHHH
Confidence 999888899999999999887664 46899999999998 5554 4433 5788999999999999987 57666666
Q ss_pred HHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecC--CcccccceeEEEeeccCchhHHHHHhhHHH
Q 000129 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDN--SYRPVPLSQQYIGIQVKKPLQRFQLMNDLC 723 (2114)
Q Consensus 646 iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~--~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~ 723 (2114)
|+.. .+.+.|.+++|||+. +.+.......+.+++-.|.. ...+..|.|.|+.+.......+-..+..+
T Consensus 351 ii~l-------cpk~RQTmLFSATMt--eeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l- 420 (691)
T KOG0338|consen 351 IIRL-------CPKNRQTMLFSATMT--EEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASL- 420 (691)
T ss_pred HHHh-------ccccccceeehhhhH--HHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHH-
Confidence 6543 467889999999997 66777777766677655544 34455678888877655433332222222
Q ss_pred HHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCC
Q 000129 724 YEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAG 803 (2114)
Q Consensus 724 ~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHag 803 (2114)
+.... ...+|||+.|++.|.++--.|--.++. ++-+||+
T Consensus 421 ---~~rtf-~~~~ivFv~tKk~AHRl~IllGLlgl~-------------------------------------agElHGs 459 (691)
T KOG0338|consen 421 ---ITRTF-QDRTIVFVRTKKQAHRLRILLGLLGLK-------------------------------------AGELHGS 459 (691)
T ss_pred ---HHHhc-ccceEEEEehHHHHHHHHHHHHHhhch-------------------------------------hhhhccc
Confidence 22222 567999999999998876655444433 4455999
Q ss_pred CCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEE
Q 000129 804 MTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883 (2114)
Q Consensus 804 l~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~i 883 (2114)
|++.+|...++.|++++++|||||++++||+|++++.+||| |+.|. ++..|+||+||+.|+| ..|.+|
T Consensus 460 LtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVIN----y~mP~------t~e~Y~HRVGRTARAG--RaGrsV 527 (691)
T KOG0338|consen 460 LTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVIN----YAMPK------TIEHYLHRVGRTARAG--RAGRSV 527 (691)
T ss_pred ccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEe----ccCch------hHHHHHHHhhhhhhcc--cCcceE
Confidence 99999999999999999999999999999999999999999 66554 7888999999999998 789999
Q ss_pred EEcCCCcHHHHHHhhcCCCcccchh
Q 000129 884 IITGHSELRYYLSLMNQQLPIESQF 908 (2114)
Q Consensus 884 il~~~~e~~~~~~ll~~~~pies~l 908 (2114)
.++..++...++.++....-..+.+
T Consensus 528 tlvgE~dRkllK~iik~~~~a~~kl 552 (691)
T KOG0338|consen 528 TLVGESDRKLLKEIIKSSTKAGSKL 552 (691)
T ss_pred EEeccccHHHHHHHHhhhhhcccch
Confidence 9999999888777766543333333
No 30
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=4.6e-41 Score=415.87 Aligned_cols=400 Identities=27% Similarity=0.377 Sum_probs=309.1
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
+|-.+|++||-... .++.|+|.|+|.||||++|..+|.-.-.. ..|+||.+|.|||.+|.++.|+..|
T Consensus 297 elD~FQk~Ai~~le-rg~SVFVAAHTSAGKTvVAEYAialaq~h-----------~TR~iYTSPIKALSNQKfRDFk~tF 364 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHLE-RGDSVFVAAHTSAGKTVVAEYAIALAQKH-----------MTRTIYTSPIKALSNQKFRDFKETF 364 (1248)
T ss_pred CccHHHHHHHHHHH-cCCeEEEEecCCCCcchHHHHHHHHHHhh-----------ccceEecchhhhhccchHHHHHHhc
Confidence 78899999998754 55669999999999999999988755433 2389999999999999999999988
Q ss_pred ccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-CCchhHHHHHHHHHHH
Q 000129 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQ 653 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~rl~~~ 653 (2114)
+. |+.+|||.+... .+.++|+|.|-+..++-+.. ..++++.+||+||+|.+.| +||.++|.++--
T Consensus 365 ~D----vgLlTGDvqinP----eAsCLIMTTEILRsMLYrga--dliRDvE~VIFDEVHYiND~eRGvVWEEViIM---- 430 (1248)
T KOG0947|consen 365 GD----VGLLTGDVQINP----EASCLIMTTEILRSMLYRGA--DLIRDVEFVIFDEVHYINDVERGVVWEEVIIM---- 430 (1248)
T ss_pred cc----cceeecceeeCC----CcceEeehHHHHHHHHhccc--chhhccceEEEeeeeecccccccccceeeeee----
Confidence 75 559999998765 58899999998855554444 4678899999999999999 899999988653
Q ss_pred HhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccC------c------------hhH-
Q 000129 654 IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVK------K------------PLQ- 714 (2114)
Q Consensus 654 ~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~------~------------~~~- 714 (2114)
.+..+++|+||||+||..++|.|++....+.+++....-|||||+..+..-..- + ...
T Consensus 431 ---lP~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~ 507 (1248)
T KOG0947|consen 431 ---LPRHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLK 507 (1248)
T ss_pred ---ccccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhc
Confidence 478999999999999999999999988788888888889999998765421000 0 000
Q ss_pred ---HHH---------------------Hh-----------hH---HHHHHHHHHhC---CCeEEEEecChHHHHHHHHHH
Q 000129 715 ---RFQ---------------------LM-----------ND---LCYEKVVAVAG---KHQVLIFVHSRKETAKTARAI 753 (2114)
Q Consensus 715 ---~~~---------------------~~-----------~~---~~~~~i~~~~~---~~~vLVFv~sr~~~~~~a~~L 753 (2114)
+.. .. ++ ..|-.+..+.. --|++|||-||+.|...|..|
T Consensus 508 ~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L 587 (1248)
T KOG0947|consen 508 KEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYL 587 (1248)
T ss_pred ccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHH
Confidence 000 00 00 12333333333 238999999999999999999
Q ss_pred HHHhhcccccccccccCchhHHH---HHhhhcc--------cCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCce
Q 000129 754 RDTALENDTLGRFLKEDSVSREI---LQSHTDM--------VKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQ 822 (2114)
Q Consensus 754 ~~~~~~~~~l~~~l~~~~~~~~~---l~~~~~~--------~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~ 822 (2114)
....+... ....++ +.+.... .+-..+.+++..|+|+||||+-+--++.||-+|..|-++
T Consensus 588 ~~~nL~~~---------~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVK 658 (1248)
T KOG0947|consen 588 TNLNLTDS---------KEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVK 658 (1248)
T ss_pred hccCcccc---------hhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceE
Confidence 86543221 111111 1111111 112356788899999999999999999999999999999
Q ss_pred EEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCC--cHHHHHHh-hc
Q 000129 823 VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS--ELRYYLSL-MN 899 (2114)
Q Consensus 823 VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~--e~~~~~~l-l~ 899 (2114)
||+||-|+|+|||+|+.+||+.+....|+.. +.++.+-+|.||+|||||.|.|..|.+|+++... +...+..+ ++
T Consensus 659 VLFATETFAMGVNMPARtvVF~Sl~KhDG~e--fR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li~G 736 (1248)
T KOG0947|consen 659 VLFATETFAMGVNMPARTVVFSSLRKHDGNE--FRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLIMG 736 (1248)
T ss_pred EEeehhhhhhhcCCCceeEEeeehhhccCcc--eeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhHhcC
Confidence 9999999999999999999999988888764 6889999999999999999999999999998874 66677775 77
Q ss_pred CCCcccchhhHhhHHHHHHHHhhccccChHHHHHHHHhhH
Q 000129 900 QQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTY 939 (2114)
Q Consensus 900 ~~~pies~l~~~l~d~l~~ei~~~~i~~~~~~~~wl~~t~ 939 (2114)
.+.+++|||.-.....||.--+.. ..+-+.++++|
T Consensus 737 ~~~~L~SQFRlTY~MILnLLRve~-----lrvEdm~krSf 771 (1248)
T KOG0947|consen 737 GPTRLESQFRLTYGMILNLLRVEA-----LRVEDMMKRSF 771 (1248)
T ss_pred CCchhhhhhhhHHHHHHHHHHHHH-----HHHHHHHHHHh
Confidence 889999999876666666432221 23445666666
No 31
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.2e-40 Score=428.98 Aligned_cols=345 Identities=19% Similarity=0.275 Sum_probs=257.5
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
.|++++..++ .||..|||+|.++++.++.+. |+|++||||||||++|++|+++.+...... ......+++|||+|
T Consensus 7 ~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~-dvlv~apTGsGKTla~~lpil~~l~~~~~~--~~~~~~~~aLil~P 83 (456)
T PRK10590 7 GLSPDILRAVAEQGYREPTPIQQQAIPAVLEGR-DLMASAQTGTGKTAGFTLPLLQHLITRQPH--AKGRRPVRALILTP 83 (456)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-CEEEECCCCCcHHHHHHHHHHHHhhhcccc--cccCCCceEEEEeC
Confidence 3577777777 799999999999999988765 599999999999999999999998654321 01123468999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccc
Q 000129 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l 635 (2114)
|++||.|+++.+..+....++++..++|+.+.+.+. ...++|+|+||+++..+..... ..++++++|||||||++
T Consensus 84 treLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~--~~l~~v~~lViDEah~l 161 (456)
T PRK10590 84 TRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNA--VKLDQVEILVLDEADRM 161 (456)
T ss_pred cHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCC--cccccceEEEeecHHHH
Confidence 999999999999998888899999999998766542 3578999999999844433322 45788999999999999
Q ss_pred cc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCC-hHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchh
Q 000129 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713 (2114)
Q Consensus 636 ~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn-~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~ 713 (2114)
.+ .+...+..++.. .+...|++++|||+++ ..+++.++..++. .+...........+.+.+..+...
T Consensus 162 l~~~~~~~i~~il~~-------l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~-~i~~~~~~~~~~~i~~~~~~~~~~--- 230 (456)
T PRK10590 162 LDMGFIHDIRRVLAK-------LPAKRQNLLFSATFSDDIKALAEKLLHNPL-EIEVARRNTASEQVTQHVHFVDKK--- 230 (456)
T ss_pred hccccHHHHHHHHHh-------CCccCeEEEEeCCCcHHHHHHHHHHcCCCe-EEEEecccccccceeEEEEEcCHH---
Confidence 87 454555444433 4567789999999986 3455555443321 111111111222233333322211
Q ss_pred HHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhc
Q 000129 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (2114)
Q Consensus 714 ~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll 793 (2114)
.+... ...+.......++||||+++..+..++..|...+
T Consensus 231 ~k~~~-----l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g------------------------------------ 269 (456)
T PRK10590 231 RKREL-----LSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDG------------------------------------ 269 (456)
T ss_pred HHHHH-----HHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCC------------------------------------
Confidence 11111 1223333345799999999999999999886543
Q ss_pred cCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCC
Q 000129 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2114)
Q Consensus 794 ~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2114)
..+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ |+.+. +..+|+||+|||||
T Consensus 270 -~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~----~~~P~------~~~~yvqR~GRaGR 338 (456)
T PRK10590 270 -IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVN----YELPN------VPEDYVHRIGRTGR 338 (456)
T ss_pred -CCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEE----eCCCC------CHHHhhhhcccccc
Confidence 23567799999999999999999999999999999999999999999999 77665 78899999999999
Q ss_pred CCCCCceEEEEEcCCCcHHHHH
Q 000129 874 PQYDSYGEGIIITGHSELRYYL 895 (2114)
Q Consensus 874 ~g~d~~G~~iil~~~~e~~~~~ 895 (2114)
.| ..|.++.++...+...+.
T Consensus 339 ~g--~~G~ai~l~~~~d~~~~~ 358 (456)
T PRK10590 339 AA--ATGEALSLVCVDEHKLLR 358 (456)
T ss_pred CC--CCeeEEEEecHHHHHHHH
Confidence 87 679999988877655443
No 32
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.2e-40 Score=426.69 Aligned_cols=346 Identities=15% Similarity=0.203 Sum_probs=253.2
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
|++++..++ .||..|+|+|+++++.++.+. |++++||||||||++|++|+++.+.......+ ....++++||++||
T Consensus 15 l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~-dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~-~~~~~~~~lil~Pt 92 (423)
T PRK04837 15 LHPQVVEALEKKGFHNCTPIQALALPLTLAGR-DVAGQAQTGTGKTMAFLTATFHYLLSHPAPED-RKVNQPRALIMAPT 92 (423)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-cEEEECCCCchHHHHHHHHHHHHHHhcccccc-cccCCceEEEECCc
Confidence 577777776 799999999999999998775 59999999999999999999999876432111 11245799999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccc
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (2114)
++||.|+++.+..+....|+++..++|+.....+. ...++|+|+||+++..+.+.. ...++++++|||||||++.
T Consensus 93 reLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~--~~~l~~v~~lViDEad~l~ 170 (423)
T PRK04837 93 RELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN--HINLGAIQVVVLDEADRMF 170 (423)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcC--CcccccccEEEEecHHHHh
Confidence 99999999999998888899999999987655432 246799999999984333332 2457889999999999998
Q ss_pred c-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEe-ecCCc-ccccceeEEEeeccCchh
Q 000129 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFY-FDNSY-RPVPLSQQYIGIQVKKPL 713 (2114)
Q Consensus 637 d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~-f~~~~-rpv~l~~~~~~~~~~~~~ 713 (2114)
+ ++...++.++.++ . .....+.+++|||++. .+..+.......+.+. ..... ....+.+.++.. ...
T Consensus 171 ~~~f~~~i~~i~~~~----~-~~~~~~~~l~SAT~~~--~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~---~~~ 240 (423)
T PRK04837 171 DLGFIKDIRWLFRRM----P-PANQRLNMLFSATLSY--RVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYP---SNE 240 (423)
T ss_pred hcccHHHHHHHHHhC----C-CccceeEEEEeccCCH--HHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeC---CHH
Confidence 7 5655555554433 1 1134567899999984 2333322221222222 12111 112222222211 111
Q ss_pred HHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhc
Q 000129 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (2114)
Q Consensus 714 ~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll 793 (2114)
.+...+ .. +.......++||||++++.|+.++..|...+
T Consensus 241 ~k~~~l----~~-ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g------------------------------------ 279 (423)
T PRK04837 241 EKMRLL----QT-LIEEEWPDRAIIFANTKHRCEEIWGHLAADG------------------------------------ 279 (423)
T ss_pred HHHHHH----HH-HHHhcCCCeEEEEECCHHHHHHHHHHHHhCC------------------------------------
Confidence 222221 22 2222336799999999999999999887533
Q ss_pred cCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCC
Q 000129 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2114)
Q Consensus 794 ~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2114)
..+.++||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+ ||++. +..+|+||+|||||
T Consensus 280 -~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~----~d~P~------s~~~yiqR~GR~gR 348 (423)
T PRK04837 280 -HRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFN----YDLPD------DCEDYVHRIGRTGR 348 (423)
T ss_pred -CcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEE----eCCCC------chhheEeccccccC
Confidence 24678899999999999999999999999999999999999999999999 66654 67789999999999
Q ss_pred CCCCCceEEEEEcCCCcHHHHH
Q 000129 874 PQYDSYGEGIIITGHSELRYYL 895 (2114)
Q Consensus 874 ~g~d~~G~~iil~~~~e~~~~~ 895 (2114)
.| ..|.|+.+.++.+...+.
T Consensus 349 ~G--~~G~ai~~~~~~~~~~~~ 368 (423)
T PRK04837 349 AG--ASGHSISLACEEYALNLP 368 (423)
T ss_pred CC--CCeeEEEEeCHHHHHHHH
Confidence 88 779999999887654444
No 33
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=2.1e-40 Score=431.35 Aligned_cols=360 Identities=19% Similarity=0.284 Sum_probs=262.0
Q ss_pred CccCCCCCCcccccChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc-----C
Q 000129 1314 TELLDLQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-----E 1387 (2114)
Q Consensus 1314 t~lldl~p~~~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~-----~ 1387 (2114)
.++..+..+ .|.......+.. ||..|||+|.++++.++.+ +|++++||||||||++|++|++.++.... .
T Consensus 118 ~pi~~f~~~---~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g-~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~ 193 (518)
T PLN00206 118 PPILSFSSC---GLPPKLLLNLETAGYEFPTPIQMQAIPAALSG-RSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSE 193 (518)
T ss_pred chhcCHHhC---CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CCEEEEecCCCCccHHHHHHHHHHHHhhccccccc
Confidence 344444433 355566666655 7999999999999999975 56999999999999999999998875321 1
Q ss_pred CCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccch---hhccCCcEEEEChhhHHHHHhhhcccccccc
Q 000129 1388 TGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQ 1464 (2114)
Q Consensus 1388 ~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~ 1464 (2114)
..++++|||+||++||.|+++.++ .+....++++..+.|+..... +.....+|+|+||++|..++.+ ....+++
T Consensus 194 ~~~~~aLIL~PTreLa~Qi~~~~~-~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~--~~~~l~~ 270 (518)
T PLN00206 194 QRNPLAMVLTPTRELCVQVEDQAK-VLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSK--HDIELDN 270 (518)
T ss_pred cCCceEEEEeCCHHHHHHHHHHHH-HHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHc--CCccchh
Confidence 234599999999999999998887 677666788877777655432 2234569999999999888776 3557899
Q ss_pred eeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHHHhcCCCCceeecCCCCCccC-cEE
Q 000129 1465 VSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVP-LEI 1542 (2114)
Q Consensus 1465 v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~wl~~~~~~~~~f~~~~rpv~-l~~ 1542 (2114)
+++||+||||++.+.+ +...+..+...+ ++.|++++|||+++. +.++.++..... .+......++.. +..
T Consensus 271 v~~lViDEad~ml~~g------f~~~i~~i~~~l-~~~q~l~~SATl~~~v~~l~~~~~~~~~-~i~~~~~~~~~~~v~q 342 (518)
T PLN00206 271 VSVLVLDEVDCMLERG------FRDQVMQIFQAL-SQPQVLLFSATVSPEVEKFASSLAKDII-LISIGNPNRPNKAVKQ 342 (518)
T ss_pred eeEEEeecHHHHhhcc------hHHHHHHHHHhC-CCCcEEEEEeeCCHHHHHHHHHhCCCCE-EEEeCCCCCCCcceeE
Confidence 9999999999998654 222333333333 367999999999874 467777654432 233333223222 111
Q ss_pred EEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhh
Q 000129 1543 HIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDN 1622 (2114)
Q Consensus 1543 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 1622 (2114)
........ .. ....+..+........++||||+|+..|..++..|..
T Consensus 343 ~~~~~~~~---~k----~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~-------------------------- 389 (518)
T PLN00206 343 LAIWVETK---QK----KQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITV-------------------------- 389 (518)
T ss_pred EEEeccch---hH----HHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhh--------------------------
Confidence 11111110 00 0112222222212346899999999999888865522
Q ss_pred hhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhH
Q 000129 1623 IQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTD 1702 (2114)
Q Consensus 1623 i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~ 1702 (2114)
..+..+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++.+|| +++.|.++.+
T Consensus 390 --------~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI----------~~d~P~s~~~ 451 (518)
T PLN00206 390 --------VTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVI----------IFDMPNTIKE 451 (518)
T ss_pred --------ccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEE----------EeCCCCCHHH
Confidence 1234578899999999999999999999999999999999999999999999 8999999999
Q ss_pred HHHhHcccCCCCCCCceEEEEEeecCcHHHHHHHHHhcc
Q 000129 1703 LLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLRLTQ 1741 (2114)
Q Consensus 1703 ~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~~~lRl~~ 1741 (2114)
|+||+|||||. +..|.|++|+...+...+..+.+.++
T Consensus 452 yihRiGRaGR~--g~~G~ai~f~~~~~~~~~~~l~~~l~ 488 (518)
T PLN00206 452 YIHQIGRASRM--GEKGTAIVFVNEEDRNLFPELVALLK 488 (518)
T ss_pred HHHhccccccC--CCCeEEEEEEchhHHHHHHHHHHHHH
Confidence 99999999998 57899999999887776666664433
No 34
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=2.1e-40 Score=428.94 Aligned_cols=337 Identities=21% Similarity=0.322 Sum_probs=257.0
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
|++++...+ .||.+|||+|.+|++.++.+. |++++||||||||++|++|+++.+.... ...+++|++||
T Consensus 11 l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~-dvi~~a~TGsGKT~a~~lpil~~l~~~~--------~~~~~lil~Pt 81 (460)
T PRK11776 11 LPPALLANLNELGYTEMTPIQAQSLPAILAGK-DVIAQAKTGSGKTAAFGLGLLQKLDVKR--------FRVQALVLCPT 81 (460)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCC-CEEEECCCCCcHHHHHHHHHHHHhhhcc--------CCceEEEEeCC
Confidence 566666666 689999999999999988765 5999999999999999999999885432 23589999999
Q ss_pred HHHHHHHHHHHHHhhccC-CcEEEEEeCCCccChhh---hccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccc
Q 000129 560 KALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l 635 (2114)
++||.|+.+.++.+.... ++++..++|+.+...+. ...++|+|+||++|..+.++.. ..++++++||+||||++
T Consensus 82 reLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~--~~l~~l~~lViDEad~~ 159 (460)
T PRK11776 82 RELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGT--LDLDALNTLVLDEADRM 159 (460)
T ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCC--ccHHHCCEEEEECHHHH
Confidence 999999999998876544 78999999998765442 3578999999999844444332 45789999999999999
Q ss_pred cc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCce-EeecCCcccccceeEEEeeccCchh
Q 000129 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGL-FYFDNSYRPVPLSQQYIGIQVKKPL 713 (2114)
Q Consensus 636 ~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~-~~f~~~~rpv~l~~~~~~~~~~~~~ 713 (2114)
.+ .++..++.++.. .+...|++++|||+|+ .+..+.......+. +..........+.+.++.+....
T Consensus 160 l~~g~~~~l~~i~~~-------~~~~~q~ll~SAT~~~--~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~-- 228 (460)
T PRK11776 160 LDMGFQDAIDAIIRQ-------APARRQTLLFSATYPE--GIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPDE-- 228 (460)
T ss_pred hCcCcHHHHHHHHHh-------CCcccEEEEEEecCcH--HHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcHH--
Confidence 87 566666666544 3567899999999984 33333332212222 22333323334555555443322
Q ss_pred HHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhc
Q 000129 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (2114)
Q Consensus 714 ~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll 793 (2114)
+...+.. +.......++||||+|++.+..++..|...+
T Consensus 229 -k~~~l~~-----ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~------------------------------------ 266 (460)
T PRK11776 229 -RLPALQR-----LLLHHQPESCVVFCNTKKECQEVADALNAQG------------------------------------ 266 (460)
T ss_pred -HHHHHHH-----HHHhcCCCceEEEECCHHHHHHHHHHHHhCC------------------------------------
Confidence 2222222 2233446789999999999999999987643
Q ss_pred cCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCC
Q 000129 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2114)
Q Consensus 794 ~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2114)
..+..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ |+.+. +..+|+||+|||||
T Consensus 267 -~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~----~d~p~------~~~~yiqR~GRtGR 335 (460)
T PRK11776 267 -FSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVIN----YELAR------DPEVHVHRIGRTGR 335 (460)
T ss_pred -CcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEE----ecCCC------CHhHhhhhcccccC
Confidence 24678899999999999999999999999999999999999999999999 55543 56689999999999
Q ss_pred CCCCCceEEEEEcCCCcHHHHH
Q 000129 874 PQYDSYGEGIIITGHSELRYYL 895 (2114)
Q Consensus 874 ~g~d~~G~~iil~~~~e~~~~~ 895 (2114)
.| ..|.|+.+++..+...+.
T Consensus 336 ~g--~~G~ai~l~~~~e~~~~~ 355 (460)
T PRK11776 336 AG--SKGLALSLVAPEEMQRAN 355 (460)
T ss_pred CC--CcceEEEEEchhHHHHHH
Confidence 87 679999999887755443
No 35
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2e-40 Score=432.31 Aligned_cols=343 Identities=18% Similarity=0.249 Sum_probs=257.5
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
.+|+++.+.+ .||++|+|+|.++++.++.+. ++|++||||||||++|++|++..+...... ....++.+|||+|
T Consensus 136 ~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~-dvI~~ApTGSGKTlaylLP~l~~i~~~~~~---~~~~gp~~LIL~P 211 (545)
T PTZ00110 136 SFPDYILKSLKNAGFTEPTPIQVQGWPIALSGR-DMIGIAETGSGKTLAFLLPAIVHINAQPLL---RYGDGPIVLVLAP 211 (545)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCC-CEEEEeCCCChHHHHHHHHHHHHHHhcccc---cCCCCcEEEEECC
Confidence 4688888877 699999999999999998876 599999999999999999999887653211 0123568999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHH-HHHHhccCCCcccccccEEEEecccc
Q 000129 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~ 634 (2114)
|++||.|+.+.+.++....++++..++|+.....+. ...++|+|+||+++ +.+.+.. ..++++++|||||||+
T Consensus 212 TreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~---~~l~~v~~lViDEAd~ 288 (545)
T PTZ00110 212 TRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNV---TNLRRVTYLVLDEADR 288 (545)
T ss_pred hHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCC---CChhhCcEEEeehHHh
Confidence 999999999999998877889999999987655432 35789999999998 5555432 4678899999999999
Q ss_pred ccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCC-hHHHHHHHhccccCceEeecCCcc---cccceeEEEeecc
Q 000129 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYR---PVPLSQQYIGIQV 709 (2114)
Q Consensus 635 l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn-~~dva~~l~~~~~~~~~~f~~~~r---pv~l~~~~~~~~~ 709 (2114)
+.+ .+.+.+..|+.. ..+..|++++|||+|. .+.++..+... ..+........ ...+.+.+..+..
T Consensus 289 mld~gf~~~i~~il~~-------~~~~~q~l~~SAT~p~~v~~l~~~l~~~--~~v~i~vg~~~l~~~~~i~q~~~~~~~ 359 (545)
T PTZ00110 289 MLDMGFEPQIRKIVSQ-------IRPDRQTLMWSATWPKEVQSLARDLCKE--EPVHVNVGSLDLTACHNIKQEVFVVEE 359 (545)
T ss_pred hhhcchHHHHHHHHHh-------CCCCCeEEEEEeCCCHHHHHHHHHHhcc--CCEEEEECCCccccCCCeeEEEEEEec
Confidence 987 566666655543 3567899999999985 23344433221 12222111111 1123333333322
Q ss_pred CchhHHHHHhhHHHHHHHHHHh-CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcch
Q 000129 710 KKPLQRFQLMNDLCYEKVVAVA-GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSND 788 (2114)
Q Consensus 710 ~~~~~~~~~~~~~~~~~i~~~~-~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~ 788 (2114)
. .+...+..+ +.... ...++||||+|++.|+.+++.|...+.
T Consensus 360 ~---~k~~~L~~l----l~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~------------------------------ 402 (545)
T PTZ00110 360 H---EKRGKLKML----LQRIMRDGDKILIFVETKKGADFLTKELRLDGW------------------------------ 402 (545)
T ss_pred h---hHHHHHHHH----HHHhcccCCeEEEEecChHHHHHHHHHHHHcCC------------------------------
Confidence 2 122222222 22222 467999999999999999998875432
Q ss_pred hhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhh
Q 000129 789 LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQML 868 (2114)
Q Consensus 789 L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~ 868 (2114)
.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||.+. ++.+|+||+
T Consensus 403 -------~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~----~d~P~------s~~~yvqRi 465 (545)
T PTZ00110 403 -------PALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVIN----FDFPN------QIEDYVHRI 465 (545)
T ss_pred -------cEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEE----eCCCC------CHHHHHHHh
Confidence 2456799999999999999999999999999999999999999999999 77765 788999999
Q ss_pred cccCCCCCCCceEEEEEcCCCcHHHHH
Q 000129 869 GRAGRPQYDSYGEGIIITGHSELRYYL 895 (2114)
Q Consensus 869 GRAGR~g~d~~G~~iil~~~~e~~~~~ 895 (2114)
|||||.| ..|.|+.+++..+.....
T Consensus 466 GRtGR~G--~~G~ai~~~~~~~~~~~~ 490 (545)
T PTZ00110 466 GRTGRAG--AKGASYTFLTPDKYRLAR 490 (545)
T ss_pred cccccCC--CCceEEEEECcchHHHHH
Confidence 9999987 679999999887654433
No 36
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=3.6e-40 Score=424.55 Aligned_cols=349 Identities=18% Similarity=0.278 Sum_probs=265.0
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccC----CCceEEEEEcccHH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE----TGVMRAVYIAPLEA 1401 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~----~~~~k~l~I~Ptr~ 1401 (2114)
|.....+.+.. ||..|||+|.++|+.++++. |++++||||||||++|++|+++.+..... ...+++|||+||++
T Consensus 8 l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~-dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~Ptre 86 (456)
T PRK10590 8 LSPDILRAVAEQGYREPTPIQQQAIPAVLEGR-DLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86 (456)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-CEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHH
Confidence 34455556654 79999999999999999865 59999999999999999999999865321 12348999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEEcCCcccchh---hccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC
Q 000129 1402 LAKERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (2114)
Q Consensus 1402 La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~ 1478 (2114)
||.|+++.++ .+....++++..++|+.+.+.+ .....+|+|+||++|..++.. ....++++++|||||||++.+
T Consensus 87 La~Qi~~~~~-~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~--~~~~l~~v~~lViDEah~ll~ 163 (456)
T PRK10590 87 LAAQIGENVR-DYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQ--NAVKLDQVEILVLDEADRMLD 163 (456)
T ss_pred HHHHHHHHHH-HHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHc--CCcccccceEEEeecHHHHhc
Confidence 9999999998 4666678899999998776532 234569999999999887765 344688999999999999987
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCC-hhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHH
Q 000129 1479 QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQ 1557 (2114)
Q Consensus 1479 ~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n-~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~ 1557 (2114)
.. +...++.+...++...|++++|||+++ ..+++.++...+..+...........+..++...+... .
T Consensus 164 ~~------~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~---k-- 232 (456)
T PRK10590 164 MG------FIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKR---K-- 232 (456)
T ss_pred cc------cHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHH---H--
Confidence 55 444555566666778899999999987 45677766554433322221111222222222111100 0
Q ss_pred hcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceE
Q 000129 1558 AMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637 (2114)
Q Consensus 1558 ~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~ 1637 (2114)
......+... ....++||||+++..|..++..|.. .+..+.
T Consensus 233 ---~~~l~~l~~~-~~~~~~lVF~~t~~~~~~l~~~L~~-----------------------------------~g~~~~ 273 (456)
T PRK10590 233 ---RELLSQMIGK-GNWQQVLVFTRTKHGANHLAEQLNK-----------------------------------DGIRSA 273 (456)
T ss_pred ---HHHHHHHHHc-CCCCcEEEEcCcHHHHHHHHHHHHH-----------------------------------CCCCEE
Confidence 0111222222 3456899999999999988876632 234578
Q ss_pred eecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCC
Q 000129 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDN 1717 (2114)
Q Consensus 1638 ~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~ 1717 (2114)
.+||+|++.+|..+++.|++|+++|||||+++++|||+|++.+|| +++.|.+..+|+||+|||||. +.
T Consensus 274 ~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI----------~~~~P~~~~~yvqR~GRaGR~--g~ 341 (456)
T PRK10590 274 AIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVV----------NYELPNVPEDYVHRIGRTGRA--AA 341 (456)
T ss_pred EEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEE----------EeCCCCCHHHhhhhccccccC--CC
Confidence 999999999999999999999999999999999999999999999 899999999999999999998 67
Q ss_pred ceEEEEEeecCcHHHHHHHHHhcc
Q 000129 1718 SGKCVILCHAPRKEYYKKFLRLTQ 1741 (2114)
Q Consensus 1718 ~G~~iil~~~~~~~~~~~~lRl~~ 1741 (2114)
.|.|++++...+...++.+.+.+.
T Consensus 342 ~G~ai~l~~~~d~~~~~~ie~~l~ 365 (456)
T PRK10590 342 TGEALSLVCVDEHKLLRDIEKLLK 365 (456)
T ss_pred CeeEEEEecHHHHHHHHHHHHHhc
Confidence 899999998888777777765544
No 37
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.7e-40 Score=430.80 Aligned_cols=345 Identities=15% Similarity=0.223 Sum_probs=253.6
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
|++++...+ .||..|||+|.++|+.++.+.+ ++++||||||||++|++|+++.+...... .......+++|||+||
T Consensus 16 l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~D-vi~~ApTGSGKTlafllpil~~l~~~~~~-~~~~~~~~raLIl~PT 93 (572)
T PRK04537 16 LHPALLAGLESAGFTRCTPIQALTLPVALPGGD-VAGQAQTGTGKTLAFLVAVMNRLLSRPAL-ADRKPEDPRALILAPT 93 (572)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCC-EEEEcCCCCcHHHHHHHHHHHHHHhcccc-cccccCCceEEEEeCc
Confidence 566677766 7999999999999999987755 99999999999999999999988653210 0011134689999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccc
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (2114)
++||.|+++.+.++....++++..++|+.....+. ...++|+|+||+++..+.+... ...+..+++|||||||++.
T Consensus 94 reLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~-~~~l~~v~~lViDEAh~ll 172 (572)
T PRK04537 94 RELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHK-VVSLHACEICVLDEADRMF 172 (572)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhcc-ccchhheeeeEecCHHHHh
Confidence 99999999999998888899999999998765432 2467999999999843333321 1356789999999999998
Q ss_pred c-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCc-eEeec-CCcccccceeEEEeeccCchh
Q 000129 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKG-LFYFD-NSYRPVPLSQQYIGIQVKKPL 713 (2114)
Q Consensus 637 d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~-~~~f~-~~~rpv~l~~~~~~~~~~~~~ 713 (2114)
+ .+...++.++.++. .....|++++|||+++ .+..+.......+ .+.+. .......+.+.++... ..
T Consensus 173 d~gf~~~i~~il~~lp-----~~~~~q~ll~SATl~~--~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~---~~ 242 (572)
T PRK04537 173 DLGFIKDIRFLLRRMP-----ERGTRQTLLFSATLSH--RVLELAYEHMNEPEKLVVETETITAARVRQRIYFPA---DE 242 (572)
T ss_pred hcchHHHHHHHHHhcc-----cccCceEEEEeCCccH--HHHHHHHHHhcCCcEEEeccccccccceeEEEEecC---HH
Confidence 7 56666666655441 1236789999999985 2222222211111 11222 2222223333333221 11
Q ss_pred HHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhc
Q 000129 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (2114)
Q Consensus 714 ~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll 793 (2114)
.+...+ . .+.....+.++||||+|+..++.+++.|...+
T Consensus 243 ~k~~~L----~-~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g------------------------------------ 281 (572)
T PRK04537 243 EKQTLL----L-GLLSRSEGARTMVFVNTKAFVERVARTLERHG------------------------------------ 281 (572)
T ss_pred HHHHHH----H-HHHhcccCCcEEEEeCCHHHHHHHHHHHHHcC------------------------------------
Confidence 122211 1 12233346799999999999999999887543
Q ss_pred cCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCC
Q 000129 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2114)
Q Consensus 794 ~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2114)
+.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||.+. +..+|+||+|||||
T Consensus 282 -~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VIn----yd~P~------s~~~yvqRiGRaGR 350 (572)
T PRK04537 282 -YRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYN----YDLPF------DAEDYVHRIGRTAR 350 (572)
T ss_pred -CCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEE----cCCCC------CHHHHhhhhccccc
Confidence 23778899999999999999999999999999999999999999999999 56553 77899999999999
Q ss_pred CCCCCceEEEEEcCCCcHHH
Q 000129 874 PQYDSYGEGIIITGHSELRY 893 (2114)
Q Consensus 874 ~g~d~~G~~iil~~~~e~~~ 893 (2114)
.| ..|.|++++...+...
T Consensus 351 ~G--~~G~ai~~~~~~~~~~ 368 (572)
T PRK04537 351 LG--EEGDAISFACERYAMS 368 (572)
T ss_pred CC--CCceEEEEecHHHHHH
Confidence 88 6799999988765443
No 38
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.3e-39 Score=421.47 Aligned_cols=345 Identities=18% Similarity=0.257 Sum_probs=262.1
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q 1405 (2114)
|.......+.. ||..|||+|.+|++.+++++ |++++||||||||++|.+|+++.+..... .++++|++||++||.|
T Consensus 11 l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~-dvi~~a~TGsGKT~a~~lpil~~l~~~~~--~~~~lil~PtreLa~Q 87 (460)
T PRK11776 11 LPPALLANLNELGYTEMTPIQAQSLPAILAGK-DVIAQAKTGSGKTAAFGLGLLQKLDVKRF--RVQALVLCPTRELADQ 87 (460)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCC-CEEEECCCCCcHHHHHHHHHHHHhhhccC--CceEEEEeCCHHHHHH
Confidence 44455556655 79999999999999999865 59999999999999999999999865322 3489999999999999
Q ss_pred HHHHHHHHhcCC-CCcEEEEEcCCcccch--hhc-cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCC
Q 000129 1406 RYRDWEIKFGQG-LGMRVVELTGETAMDL--KLL-EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2114)
Q Consensus 1406 ~~~~~~~~f~~~-~g~~v~~l~G~~~~~~--~~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g 1481 (2114)
+++.++. +... .+.++..++|+.+.+. ..+ ..++|+|+||++|..++++ ....++++++||+||||++.+.+
T Consensus 88 ~~~~~~~-~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~--~~~~l~~l~~lViDEad~~l~~g- 163 (460)
T PRK11776 88 VAKEIRR-LARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRK--GTLDLDALNTLVLDEADRMLDMG- 163 (460)
T ss_pred HHHHHHH-HHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHc--CCccHHHCCEEEEECHHHHhCcC-
Confidence 9999984 5433 4789999999887642 222 4569999999999988876 34568899999999999988665
Q ss_pred chHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcC
Q 000129 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMT 1560 (2114)
Q Consensus 1482 ~~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~ 1560 (2114)
+...+..+...++...|++++|||+++. ..++..+...+.. +.+........+...+....... ..
T Consensus 164 -----~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~-i~~~~~~~~~~i~~~~~~~~~~~---k~---- 230 (460)
T PRK11776 164 -----FQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVE-VKVESTHDLPAIEQRFYEVSPDE---RL---- 230 (460)
T ss_pred -----cHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEE-EEECcCCCCCCeeEEEEEeCcHH---HH----
Confidence 4444555566667889999999999763 3455544333322 22222222222333332221111 11
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeec
Q 000129 1561 KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLH 1640 (2114)
Q Consensus 1561 ~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H 1640 (2114)
.....++.. ...+++||||+|++.|+.++..|.. .+..+..+|
T Consensus 231 -~~l~~ll~~-~~~~~~lVF~~t~~~~~~l~~~L~~-----------------------------------~~~~v~~~h 273 (460)
T PRK11776 231 -PALQRLLLH-HQPESCVVFCNTKKECQEVADALNA-----------------------------------QGFSALALH 273 (460)
T ss_pred -HHHHHHHHh-cCCCceEEEECCHHHHHHHHHHHHh-----------------------------------CCCcEEEEe
Confidence 112223333 3457899999999999999977732 134689999
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceE
Q 000129 1641 EGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGK 1720 (2114)
Q Consensus 1641 ~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~ 1720 (2114)
|+|++.+|..+++.|++|.++|||||+++++|+|+|++.+|| +++.|.+..+|+||+|||||. +..|.
T Consensus 274 g~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI----------~~d~p~~~~~yiqR~GRtGR~--g~~G~ 341 (460)
T PRK11776 274 GDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVI----------NYELARDPEVHVHRIGRTGRA--GSKGL 341 (460)
T ss_pred CCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEE----------EecCCCCHhHhhhhcccccCC--CCcce
Confidence 999999999999999999999999999999999999999999 899999999999999999998 67899
Q ss_pred EEEEeecCcHHHHHHHHHhc
Q 000129 1721 CVILCHAPRKEYYKKFLRLT 1740 (2114)
Q Consensus 1721 ~iil~~~~~~~~~~~~lRl~ 1740 (2114)
|+.++...+...++.+.+..
T Consensus 342 ai~l~~~~e~~~~~~i~~~~ 361 (460)
T PRK11776 342 ALSLVAPEEMQRANAIEDYL 361 (460)
T ss_pred EEEEEchhHHHHHHHHHHHh
Confidence 99999887766666555443
No 39
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.3e-39 Score=424.60 Aligned_cols=352 Identities=16% Similarity=0.230 Sum_probs=263.9
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc---CCCceEEEEEcccHH
Q 000129 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS---ETGVMRAVYIAPLEA 1401 (2114)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~---~~~~~k~l~I~Ptr~ 1401 (2114)
.++....+.+.. ||..|+|+|.++++.++.+++ +|++||||||||++|++|++.++.... ...++.+|||+||++
T Consensus 136 ~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~d-vI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTre 214 (545)
T PTZ00110 136 SFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRD-MIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRE 214 (545)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCC-EEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHH
Confidence 345556667765 799999999999999998665 999999999999999999998876521 122458999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEEcCCcccch---hhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC
Q 000129 1402 LAKERYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (2114)
Q Consensus 1402 La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~ 1478 (2114)
||.|+.+.++ .|+...++++..++|+..... .....++|+|+||+++..++.+ ....+.++++||+||||++.+
T Consensus 215 La~Qi~~~~~-~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~--~~~~l~~v~~lViDEAd~mld 291 (545)
T PTZ00110 215 LAEQIREQCN-KFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLES--NVTNLRRVTYLVLDEADRMLD 291 (545)
T ss_pred HHHHHHHHHH-HHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHc--CCCChhhCcEEEeehHHhhhh
Confidence 9999999988 677767888888888876542 2334569999999999888876 344688999999999999987
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHHHhcCCCCceeecCCCC-C-ccCcEEEEecccccchHHH
Q 000129 1479 QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGV-R-PVPLEIHIQGVDITNFEAR 1555 (2114)
Q Consensus 1479 ~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~wl~~~~~~~~~f~~~~-r-pv~l~~~~~~~~~~~~~~~ 1555 (2114)
.. +...++.+..++....|++++|||++.. ..++.++-......+...... . ...+...+.... .. ..
T Consensus 292 ~g------f~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~--~~-~k 362 (545)
T PTZ00110 292 MG------FEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVE--EH-EK 362 (545)
T ss_pred cc------hHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEe--ch-hH
Confidence 55 4445566666677889999999999763 456655543211111111110 0 001111111111 00 00
Q ss_pred HHhcCHHHHHHHHHHh-cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhcc
Q 000129 1556 MQAMTKPTFTAIVQHA-KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRH 1634 (2114)
Q Consensus 1556 ~~~~~~~~~~~i~~~l-~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~ 1634 (2114)
. ..+..++..+ ..+.++||||+|++.|+.++..|.. .+.
T Consensus 363 ~-----~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~-----------------------------------~g~ 402 (545)
T PTZ00110 363 R-----GKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRL-----------------------------------DGW 402 (545)
T ss_pred H-----HHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHH-----------------------------------cCC
Confidence 0 1112222222 2577999999999999999876632 123
Q ss_pred ceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCC
Q 000129 1635 GVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPL 1714 (2114)
Q Consensus 1635 gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~ 1714 (2114)
.+..+||++++.+|..+++.|++|+++|||||+++++|||+|++.+|| +++.|.++.+|+||+|||||.
T Consensus 403 ~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI----------~~d~P~s~~~yvqRiGRtGR~- 471 (545)
T PTZ00110 403 PALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVI----------NFDFPNQIEDYVHRIGRTGRA- 471 (545)
T ss_pred cEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEE----------EeCCCCCHHHHHHHhcccccC-
Confidence 578899999999999999999999999999999999999999999999 899999999999999999998
Q ss_pred CCCceEEEEEeecCcHHHHHHHHHhccC
Q 000129 1715 LDNSGKCVILCHAPRKEYYKKFLRLTQN 1742 (2114)
Q Consensus 1715 ~~~~G~~iil~~~~~~~~~~~~lRl~~n 1742 (2114)
+..|.|++|+...+....+.+++++..
T Consensus 472 -G~~G~ai~~~~~~~~~~~~~l~~~l~~ 498 (545)
T PTZ00110 472 -GAKGASYTFLTPDKYRLARDLVKVLRE 498 (545)
T ss_pred -CCCceEEEEECcchHHHHHHHHHHHHH
Confidence 679999999998887777766655443
No 40
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=1.2e-39 Score=445.57 Aligned_cols=401 Identities=20% Similarity=0.261 Sum_probs=265.6
Q ss_pred EEccCCCchHHHHHHHHHHHHHhccCCC--CCCCCCCcEEEEEcccHHHHHHHHHHHHHhhc------------cCCcEE
Q 000129 516 LCAPTGAGKTNVAVLTILQQLALNRNDD--GSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ------------MYDVKV 581 (2114)
Q Consensus 516 v~APTGsGKT~~a~l~il~~l~~~~~~~--g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~------------~~gi~v 581 (2114)
|+||||||||++|.+|++..+....... +.....+.++|||+|+|||+.|+.++++..+. ..+++|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5899999999999999999887542110 00112357999999999999999999875221 247999
Q ss_pred EEEeCCCccChhh---hccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-CCchhHHHHHHHHHHHHhhc
Q 000129 582 RELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETT 657 (2114)
Q Consensus 582 ~~l~Gd~~~~~~~---~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~rl~~~~~~~ 657 (2114)
...+||.+...+. .+.++|+|||||+|+.+.... ....++++++|||||+|.|.+ .||..++.++.|+... .
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk-~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l---~ 156 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSR-ARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDAL---L 156 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhh-hhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHh---C
Confidence 9999999877643 247899999999996654432 235789999999999999987 5999999999998654 3
Q ss_pred cccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCch-------------hHHHHHhhHHHH
Q 000129 658 KEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKP-------------LQRFQLMNDLCY 724 (2114)
Q Consensus 658 ~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~-------------~~~~~~~~~~~~ 724 (2114)
..+.|+||||||++|.+++++||.......+ +.....++.++...+ ....... ..+...+...++
T Consensus 157 ~~~~QrIgLSATI~n~eevA~~L~g~~pv~I-v~~~~~r~~~l~v~v-p~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~ 234 (1490)
T PRK09751 157 HTSAQRIGLSATVRSASDVAAFLGGDRPVTV-VNPPAMRHPQIRIVV-PVANMDDVSSVASGTGEDSHAGREGSIWPYIE 234 (1490)
T ss_pred CCCCeEEEEEeeCCCHHHHHHHhcCCCCEEE-ECCCCCcccceEEEE-ecCchhhccccccccccccchhhhhhhhHHHH
Confidence 4578999999999999999999975421112 223344555554222 1111000 000111111222
Q ss_pred HHHHH-HhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhh---hhccCceEEe
Q 000129 725 EKVVA-VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK---DLLPYGFAIH 800 (2114)
Q Consensus 725 ~~i~~-~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~---~ll~~gv~~h 800 (2114)
..+.. ....+++|||||||+.|+.++..|.+........ ..........+ ....+.... ......+.+|
T Consensus 235 ~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~--~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ia~~H 307 (1490)
T PRK09751 235 TGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQR--SPSIAVDAAHF-----ESTSGATSNRVQSSDVFIARSH 307 (1490)
T ss_pred HHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccc--cccccchhhhh-----hhccccchhccccccceeeeec
Confidence 22332 2336799999999999999999998653210000 00000000000 000011111 1112347899
Q ss_pred cCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCce
Q 000129 801 HAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYG 880 (2114)
Q Consensus 801 Hagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G 880 (2114)
||+|++++|..+++.|++|.+++||||+++++|||+|++++||+ |+.+. |+.+|+||+|||||. .+..+
T Consensus 308 HGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq----~gsP~------sVas~LQRiGRAGR~-~gg~s 376 (1490)
T PRK09751 308 HGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQ----VATPL------SVASGLQRIGRAGHQ-VGGVS 376 (1490)
T ss_pred cccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEE----eCCCC------CHHHHHHHhCCCCCC-CCCcc
Confidence 99999999999999999999999999999999999999999999 55443 889999999999996 46677
Q ss_pred EEEEEcCCCc-HHH----HHHhhcCC-Ccccc--hhhHhhHHHHHHHHhhccccChHHHHHHHHhhHHH
Q 000129 881 EGIIITGHSE-LRY----YLSLMNQQ-LPIES--QFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLY 941 (2114)
Q Consensus 881 ~~iil~~~~e-~~~----~~~ll~~~-~pies--~l~~~l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~ 941 (2114)
.++++..+.. .-. ...++... .|+.. .-...|..|+.+.++.+.+ +.++..+.+..+|.|
T Consensus 377 ~gli~p~~r~dlle~~~~ve~~l~g~iE~~~~p~nplDVLaqqiva~a~~~~~-~~d~l~~~vrra~pf 444 (1490)
T PRK09751 377 KGLFFPRTRRDLVDSAVIVECMFAGRLENLTPPHNPLDVLAQQTVAAAAMDAL-QVDEWYSRVRRAAPW 444 (1490)
T ss_pred EEEEEeCcHHHHHhhHHHHHHHhcCCCCccCCCCChHHHHHHHHHHHHhcCCC-CHHHHHHHhhccCCc
Confidence 8887666532 111 12233322 12222 2234677777777776543 356666655555544
No 41
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.8e-40 Score=424.46 Aligned_cols=340 Identities=22% Similarity=0.348 Sum_probs=267.5
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
|++++.+++ .||..|+|||.++||.++.+.+ ++++|+||||||.+|.+|+++.+...... ....+|+++||
T Consensus 36 l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~D-vi~~A~TGsGKT~Af~lP~l~~l~~~~~~------~~~~aLil~PT 108 (513)
T COG0513 36 LSPELLQALKDLGFEEPTPIQLAAIPLILAGRD-VLGQAQTGTGKTAAFLLPLLQKILKSVER------KYVSALILAPT 108 (513)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCC-EEEECCCCChHHHHHHHHHHHHHhccccc------CCCceEEECCC
Confidence 455555555 6999999999999999999855 99999999999999999999997742110 11119999999
Q ss_pred HHHHHHHHHHHHHhhccC-CcEEEEEeCCCccChhh---hccceEEEcCHhHH-HHHHhccCCCcccccccEEEEecccc
Q 000129 560 KALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~ 634 (2114)
|+||.|+++.+..+.... ++++..++|+.+...+. ...++|+|+||+++ |++.+. ...++.++++|+||||.
T Consensus 109 RELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~---~l~l~~v~~lVlDEADr 185 (513)
T COG0513 109 RELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRG---KLDLSGVETLVLDEADR 185 (513)
T ss_pred HHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcC---CcchhhcCEEEeccHhh
Confidence 999999999999988877 79999999998876653 23599999999997 777776 36788999999999999
Q ss_pred ccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecC--Cc--ccccceeEEEeecc
Q 000129 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDN--SY--RPVPLSQQYIGIQV 709 (2114)
Q Consensus 635 l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~--~~--rpv~l~~~~~~~~~ 709 (2114)
|+| ++.+.++.|+..+ +.+.|++++|||+|. .+..+.......+...... .. .+..+.+.++.+..
T Consensus 186 mLd~Gf~~~i~~I~~~~-------p~~~qtllfSAT~~~--~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~ 256 (513)
T COG0513 186 MLDMGFIDDIEKILKAL-------PPDRQTLLFSATMPD--DIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVES 256 (513)
T ss_pred hhcCCCHHHHHHHHHhC-------CcccEEEEEecCCCH--HHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCC
Confidence 999 6888888777654 458999999999996 5766666544444322222 21 34456666665543
Q ss_pred CchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchh
Q 000129 710 KKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDL 789 (2114)
Q Consensus 710 ~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L 789 (2114)
.. .++..+. .+.+.....++||||+|+..+..++..|...++.
T Consensus 257 ~~--~k~~~L~-----~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~------------------------------ 299 (513)
T COG0513 257 EE--EKLELLL-----KLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFK------------------------------ 299 (513)
T ss_pred HH--HHHHHHH-----HHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCe------------------------------
Confidence 32 2222222 2334444568999999999999999998876533
Q ss_pred hhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhc
Q 000129 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLG 869 (2114)
Q Consensus 790 ~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~G 869 (2114)
+..+||+|++++|..+++.|++|..+|||||++++||+|+|++.+||| ||.+. +..+|+||+|
T Consensus 300 -------~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Vin----yD~p~------~~e~yvHRiG 362 (513)
T COG0513 300 -------VAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVIN----YDLPL------DPEDYVHRIG 362 (513)
T ss_pred -------EEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEE----ccCCC------CHHHheeccC
Confidence 556699999999999999999999999999999999999999999999 66554 6678999999
Q ss_pred ccCCCCCCCceEEEEEcCCC-cHHHHHH
Q 000129 870 RAGRPQYDSYGEGIIITGHS-ELRYYLS 896 (2114)
Q Consensus 870 RAGR~g~d~~G~~iil~~~~-e~~~~~~ 896 (2114)
|+||.| ..|.++.++++. +...+..
T Consensus 363 RTgRaG--~~G~ai~fv~~~~e~~~l~~ 388 (513)
T COG0513 363 RTGRAG--RKGVAISFVTEEEEVKKLKR 388 (513)
T ss_pred ccccCC--CCCeEEEEeCcHHHHHHHHH
Confidence 999998 789999999875 5554443
No 42
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.4e-39 Score=416.66 Aligned_cols=344 Identities=20% Similarity=0.274 Sum_probs=253.3
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccC-----CCceEEEEEccc
Q 000129 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE-----TGVMRAVYIAPL 1399 (2114)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~-----~~~~k~l~I~Pt 1399 (2114)
.|.....+.+.. ||..|+|+|.+|++.+++++ |++++||||||||++|++|+++.+..... ..++++|||+||
T Consensus 14 ~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~-dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~Pt 92 (423)
T PRK04837 14 ALHPQVVEALEKKGFHNCTPIQALALPLTLAGR-DVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPT 92 (423)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-cEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCc
Confidence 355556666655 79999999999999999865 59999999999999999999998865321 123589999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccc--hhhcc-CCcEEEEChhhHHHHHhhhcccccccceeEEEecccccc
Q 000129 1400 EALAKERYRDWEIKFGQGLGMRVVELTGETAMD--LKLLE-KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 1476 (2114)
Q Consensus 1400 r~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~--~~~l~-~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l 1476 (2114)
++||.|+++.+. .+....|+++..++|+...+ ...+. ..+|+|+||+++..++++ ....+.+++++|+||||++
T Consensus 93 reLa~Qi~~~~~-~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~--~~~~l~~v~~lViDEad~l 169 (423)
T PRK04837 93 RELAVQIHADAE-PLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQ--NHINLGAIQVVVLDEADRM 169 (423)
T ss_pred HHHHHHHHHHHH-HHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHc--CCcccccccEEEEecHHHH
Confidence 999999999988 56666789999999876644 22333 459999999999888765 3456889999999999998
Q ss_pred cCCCCchHHHHHHHHHHHHhhcC--CCceEEEEcccCCChh-HHH-HHhcCCCCceeecCCCCC-ccCcEEEEecccccc
Q 000129 1477 GGQGGPVLEVIVSRMRYIASQVE--NKIRIVALSTSLANAK-DLG-EWIGATSHGLFNFPPGVR-PVPLEIHIQGVDITN 1551 (2114)
Q Consensus 1477 ~~~~g~~le~i~srl~~i~~~~~--~~~riV~lSATl~n~~-dla-~wl~~~~~~~~~f~~~~r-pv~l~~~~~~~~~~~ 1551 (2114)
.+.+ +...++.+...++ ...+.+++|||++..- .+. .++... ..+...+... ...+...+.. ..
T Consensus 170 ~~~~------f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p--~~i~v~~~~~~~~~i~~~~~~---~~ 238 (423)
T PRK04837 170 FDLG------FIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNP--EYVEVEPEQKTGHRIKEELFY---PS 238 (423)
T ss_pred hhcc------cHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCC--EEEEEcCCCcCCCceeEEEEe---CC
Confidence 7654 3334444444444 2456799999997532 332 333322 1222222211 1111111110 01
Q ss_pred hHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHH
Q 000129 1552 FEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKAT 1631 (2114)
Q Consensus 1552 ~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~ 1631 (2114)
..... .....+... ....++||||+++..|+.++..|..
T Consensus 239 ~~~k~-----~~l~~ll~~-~~~~~~lVF~~t~~~~~~l~~~L~~----------------------------------- 277 (423)
T PRK04837 239 NEEKM-----RLLQTLIEE-EWPDRAIIFANTKHRCEEIWGHLAA----------------------------------- 277 (423)
T ss_pred HHHHH-----HHHHHHHHh-cCCCeEEEEECCHHHHHHHHHHHHh-----------------------------------
Confidence 11111 111222222 3457899999999999988876632
Q ss_pred hccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccC
Q 000129 1632 LRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHAS 1711 (2114)
Q Consensus 1632 l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAG 1711 (2114)
.+..+.++||+|++.+|..+++.|++|+++|||||+++++|||+|++.+|| +++.|.+..+|+||+||||
T Consensus 278 ~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI----------~~d~P~s~~~yiqR~GR~g 347 (423)
T PRK04837 278 DGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVF----------NYDLPDDCEDYVHRIGRTG 347 (423)
T ss_pred CCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEE----------EeCCCCchhheEecccccc
Confidence 245689999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred CCCCCCceEEEEEeecCcHHHHHHHH
Q 000129 1712 RPLLDNSGKCVILCHAPRKEYYKKFL 1737 (2114)
Q Consensus 1712 R~~~~~~G~~iil~~~~~~~~~~~~l 1737 (2114)
|. +..|.|+.|+.+.+...+..+.
T Consensus 348 R~--G~~G~ai~~~~~~~~~~~~~i~ 371 (423)
T PRK04837 348 RA--GASGHSISLACEEYALNLPAIE 371 (423)
T ss_pred CC--CCCeeEEEEeCHHHHHHHHHHH
Confidence 98 6889999999887666555544
No 43
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=4.5e-40 Score=386.29 Aligned_cols=343 Identities=18% Similarity=0.293 Sum_probs=271.9
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCC-CCCCCCcEEEEEcccHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDG-SFNHSNYKIVYVAPMKALVAEVVGN 569 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g-~~~~~~~kil~iaP~raLa~q~~~~ 569 (2114)
.||..|+|||.+|+|..++.+ ++|..|.||||||.+|++|++-.+...+.... .-...++++++++|||+|++|+..+
T Consensus 263 ~~y~eptpIqR~aipl~lQ~r-D~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeE 341 (673)
T KOG0333|consen 263 PGYKEPTPIQRQAIPLGLQNR-DPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEE 341 (673)
T ss_pred cCCCCCchHHHhhccchhccC-CeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHH
Confidence 599999999999999777655 49999999999999999999998876543221 1234578999999999999999999
Q ss_pred HHHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccccccc-CCchhHH
Q 000129 570 LSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLE 644 (2114)
Q Consensus 570 ~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le 644 (2114)
-.+++..+|+++..+.|+.+++.+- ...|+|+|+||+++ |++-++. ..++.+.+||+|||+.|.| ++.+.+.
T Consensus 342 t~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~---lvl~qctyvvldeadrmiDmgfE~dv~ 418 (673)
T KOG0333|consen 342 TNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRY---LVLNQCTYVVLDEADRMIDMGFEPDVQ 418 (673)
T ss_pred HHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHH---HHhccCceEeccchhhhhcccccHHHH
Confidence 9999999999999999999988762 46899999999998 7777765 4678899999999999999 7888888
Q ss_pred HHHHHHHHHH------------------hhccccccEEEEccccCChHHHHHHHhccccCceEe-ecCCcccccc-eeEE
Q 000129 645 SIVARTVRQI------------------ETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFY-FDNSYRPVPL-SQQY 704 (2114)
Q Consensus 645 ~iv~rl~~~~------------------~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~-f~~~~rpv~l-~~~~ 704 (2114)
.+++.+...- .....-.|.+.||||+|. .+...++..+..++.+ ....-+|.+. +|.+
T Consensus 419 ~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p--~verlar~ylr~pv~vtig~~gk~~~rveQ~v 496 (673)
T KOG0333|consen 419 KILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPP--AVERLARSYLRRPVVVTIGSAGKPTPRVEQKV 496 (673)
T ss_pred HHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCCh--HHHHHHHHHhhCCeEEEeccCCCCccchheEE
Confidence 8887653211 111122688999999995 3444444433444443 4444566664 4455
Q ss_pred EeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhccc
Q 000129 705 IGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMV 784 (2114)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~ 784 (2114)
+.++.....++ +.+ +++.....++|||+|+++.|..+|+.|...++.
T Consensus 497 ~m~~ed~k~kk---L~e-----il~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~------------------------- 543 (673)
T KOG0333|consen 497 EMVSEDEKRKK---LIE-----ILESNFDPPIIIFVNTKKGADALAKILEKAGYK------------------------- 543 (673)
T ss_pred EEecchHHHHH---HHH-----HHHhCCCCCEEEEEechhhHHHHHHHHhhccce-------------------------
Confidence 54554433222 222 233334679999999999999999999876644
Q ss_pred CcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHH
Q 000129 785 KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDI 864 (2114)
Q Consensus 785 ~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~ 864 (2114)
+..+|||-++++|..++..|+.|..+|||||+++++|||+|+|.+||| ||..+ |+.+|
T Consensus 544 ------------~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVin----ydmak------sieDY 601 (673)
T KOG0333|consen 544 ------------VTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVIN----YDMAK------SIEDY 601 (673)
T ss_pred ------------EEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeee----cchhh------hHHHH
Confidence 455699999999999999999999999999999999999999999999 88877 89999
Q ss_pred HHhhcccCCCCCCCceEEEEEcCCCcHHHHHH
Q 000129 865 MQMLGRAGRPQYDSYGEGIIITGHSELRYYLS 896 (2114)
Q Consensus 865 ~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~~ 896 (2114)
+||+||+||+| +.|.++.|++..+...|..
T Consensus 602 tHRIGRTgRAG--k~GtaiSflt~~dt~v~yd 631 (673)
T KOG0333|consen 602 THRIGRTGRAG--KSGTAISFLTPADTAVFYD 631 (673)
T ss_pred HHHhccccccc--cCceeEEEeccchhHHHHH
Confidence 99999999998 8899999999877654443
No 44
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2e-39 Score=417.38 Aligned_cols=342 Identities=23% Similarity=0.297 Sum_probs=257.0
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
.|++.+.+.+ .||..|+++|.++++.++++. +++++||||+|||++|++|+++.+...... .....++||++|
T Consensus 7 ~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~-d~l~~apTGsGKT~~~~lp~l~~l~~~~~~----~~~~~~~lil~P 81 (434)
T PRK11192 7 ELDESLLEALQDKGYTRPTAIQAEAIPPALDGR-DVLGSAPTGTGKTAAFLLPALQHLLDFPRR----KSGPPRILILTP 81 (434)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-CEEEECCCCChHHHHHHHHHHHHHhhcccc----CCCCceEEEECC
Confidence 3566677777 799999999999999999775 599999999999999999999998754221 123468999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHH-HHHHhccCCCcccccccEEEEecccc
Q 000129 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~ 634 (2114)
|++||.|+++.+..+....++++..++|+.....+. ...++|+|+||+++ +.+.+.. ..++.+++|||||||+
T Consensus 82 t~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~---~~~~~v~~lViDEah~ 158 (434)
T PRK11192 82 TRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEEN---FDCRAVETLILDEADR 158 (434)
T ss_pred cHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC---cCcccCCEEEEECHHH
Confidence 999999999999998888899999999998765542 34679999999997 4444322 3467899999999999
Q ss_pred ccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCC--hHHHHHHHhccccCceEeecCCcccc-cceeEEEeeccC
Q 000129 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYFDNSYRPV-PLSQQYIGIQVK 710 (2114)
Q Consensus 635 l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn--~~dva~~l~~~~~~~~~~f~~~~rpv-~l~~~~~~~~~~ 710 (2114)
+.+ .++..++.+... .+...|++++|||++. ..++..++...+. .+......+.. .+.+.+....
T Consensus 159 ~l~~~~~~~~~~i~~~-------~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~i~~~~~~~~-- 227 (434)
T PRK11192 159 MLDMGFAQDIETIAAE-------TRWRKQTLLFSATLEGDAVQDFAERLLNDPV--EVEAEPSRRERKKIHQWYYRAD-- 227 (434)
T ss_pred HhCCCcHHHHHHHHHh-------CccccEEEEEEeecCHHHHHHHHHHHccCCE--EEEecCCcccccCceEEEEEeC--
Confidence 987 567766665443 3456789999999864 4555555543321 11122211111 1222222111
Q ss_pred chhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhh
Q 000129 711 KPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK 790 (2114)
Q Consensus 711 ~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~ 790 (2114)
....+.. .+. .+.......++||||+++..+..++..|...+
T Consensus 228 ~~~~k~~----~l~-~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~--------------------------------- 269 (434)
T PRK11192 228 DLEHKTA----LLC-HLLKQPEVTRSIVFVRTRERVHELAGWLRKAG--------------------------------- 269 (434)
T ss_pred CHHHHHH----HHH-HHHhcCCCCeEEEEeCChHHHHHHHHHHHhCC---------------------------------
Confidence 1111222 122 23333346799999999999999999887532
Q ss_pred hhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcc
Q 000129 791 DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGR 870 (2114)
Q Consensus 791 ~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GR 870 (2114)
..+.++||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||++. |...|+||+||
T Consensus 270 ----~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~----~d~p~------s~~~yiqr~GR 335 (434)
T PRK11192 270 ----INCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVIN----FDMPR------SADTYLHRIGR 335 (434)
T ss_pred ----CCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEE----ECCCC------CHHHHhhcccc
Confidence 23678899999999999999999999999999999999999999999999 66654 77899999999
Q ss_pred cCCCCCCCceEEEEEcCCCcHHHHH
Q 000129 871 AGRPQYDSYGEGIIITGHSELRYYL 895 (2114)
Q Consensus 871 AGR~g~d~~G~~iil~~~~e~~~~~ 895 (2114)
|||.| ..|.++.+.+..+...+.
T Consensus 336 ~gR~g--~~g~ai~l~~~~d~~~~~ 358 (434)
T PRK11192 336 TGRAG--RKGTAISLVEAHDHLLLG 358 (434)
T ss_pred cccCC--CCceEEEEecHHHHHHHH
Confidence 99987 679999998876654443
No 45
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=4e-39 Score=439.26 Aligned_cols=350 Identities=23% Similarity=0.356 Sum_probs=262.2
Q ss_pred hHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccC----CCceEEEEEcccHHHHH
Q 000129 1330 PLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE----TGVMRAVYIAPLEALAK 1404 (2114)
Q Consensus 1330 ~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~----~~~~k~l~I~Ptr~La~ 1404 (2114)
+.++..+. +|..|||+|+++++.+++ ++|++++||||||||++|.+|+++.+..... ..++++|||+|+++|+.
T Consensus 20 ~~v~~~~~~~~~~~tpiQ~~Ai~~il~-g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~ 98 (876)
T PRK13767 20 PYVREWFKEKFGTFTPPQRYAIPLIHE-GKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNN 98 (876)
T ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHc-CCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHH
Confidence 45555554 689999999999999877 5579999999999999999999998875321 22458999999999999
Q ss_pred HHHHHHHHHh----------cCCC-CcEEEEEcCCcccchh--hc-cCCcEEEEChhhHHHHHhhhcccccccceeEEEe
Q 000129 1405 ERYRDWEIKF----------GQGL-GMRVVELTGETAMDLK--LL-EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFII 1470 (2114)
Q Consensus 1405 q~~~~~~~~f----------~~~~-g~~v~~l~G~~~~~~~--~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIi 1470 (2114)
|+++++...+ +... ++++...+|+++...+ .+ ..++|+|+|||+|..+++.......++++++|||
T Consensus 99 di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVI 178 (876)
T PRK13767 99 DIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIV 178 (876)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEE
Confidence 9998765322 2222 7789999999876533 23 3569999999999988876544457899999999
Q ss_pred cccccccC-CCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhcCCC-----Cc-eeecCCCCCccCcEEE
Q 000129 1471 DELHLIGG-QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATS-----HG-LFNFPPGVRPVPLEIH 1543 (2114)
Q Consensus 1471 DEaH~l~~-~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~~-----~~-~~~f~~~~rpv~l~~~ 1543 (2114)
||+|.+.+ .+|..++..+.++..+. +.+.|+|++|||++|.++++.|++... .. .+......++..+.+.
T Consensus 179 DE~H~l~~~~RG~~l~~~L~rL~~l~---~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~ 255 (876)
T PRK13767 179 DEIHSLAENKRGVHLSLSLERLEELA---GGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVI 255 (876)
T ss_pred echhhhccCccHHHHHHHHHHHHHhc---CCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEe
Confidence 99999885 57999999999998874 457899999999999999999997641 11 1111112223222222
Q ss_pred EecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhh
Q 000129 1544 IQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNI 1623 (2114)
Q Consensus 1544 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i 1623 (2114)
........ .....+....+..+...+..++++||||||++.|+.++..|...+..
T Consensus 256 ~p~~~l~~--~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~----------------------- 310 (876)
T PRK13767 256 SPVDDLIH--TPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPE----------------------- 310 (876)
T ss_pred ccCccccc--cccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchh-----------------------
Confidence 11000000 00011223344555555566789999999999999999887542210
Q ss_pred hHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHH
Q 000129 1624 QEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDL 1703 (2114)
Q Consensus 1624 ~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~ 1703 (2114)
.....++++|||+|++++|..+++.|++|.++|||||+++++|||+|++.+|| +++.|.++.+|
T Consensus 311 ------~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI----------~~~~P~sv~~y 374 (876)
T PRK13767 311 ------EYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVV----------LLGSPKSVSRL 374 (876)
T ss_pred ------hccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEE----------EeCCCCCHHHH
Confidence 01345799999999999999999999999999999999999999999999999 78899999999
Q ss_pred HHhHcccCCCCCCCceEEEEEe
Q 000129 1704 LQMMGHASRPLLDNSGKCVILC 1725 (2114)
Q Consensus 1704 lQr~GRAGR~~~~~~G~~iil~ 1725 (2114)
+||+|||||.+ +..+.+++++
T Consensus 375 lQRiGRaGR~~-g~~~~g~ii~ 395 (876)
T PRK13767 375 LQRIGRAGHRL-GEVSKGRIIV 395 (876)
T ss_pred HHhcccCCCCC-CCCCcEEEEE
Confidence 99999999964 3333344443
No 46
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-40 Score=387.03 Aligned_cols=348 Identities=20% Similarity=0.270 Sum_probs=274.8
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCC--ceEEEEEcccHHH
Q 000129 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETG--VMRAVYIAPLEAL 1402 (2114)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~--~~k~l~I~Ptr~L 1402 (2114)
+|..+.++.+-. ||..|||||.++||.++-+.+ ++.||.||||||.+|.+|+|..+.-. +.+ ..|+||++|||+|
T Consensus 187 NLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkD-Ica~A~TGsGKTAAF~lPiLERLlYr-Pk~~~~TRVLVL~PTREL 264 (691)
T KOG0338|consen 187 NLSRPLLKACSTLGYKKPTPIQVATIPVALLGKD-ICACAATGSGKTAAFALPILERLLYR-PKKVAATRVLVLVPTREL 264 (691)
T ss_pred ccchHHHHHHHhcCCCCCCchhhhcccHHhhcch-hhheecccCCchhhhHHHHHHHHhcC-cccCcceeEEEEeccHHH
Confidence 344566777655 899999999999999988777 99999999999999999999998863 222 2489999999999
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEcCCcccchh--hc-cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCC
Q 000129 1403 AKERYRDWEIKFGQGLGMRVVELTGETAMDLK--LL-EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479 (2114)
Q Consensus 1403 a~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~--~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~ 1479 (2114)
+.|++...+ .++.+..+.|+.+.|+.+...+ .+ ..+||+|+||++|..++|+.. ...+.++.++|+||||+++++
T Consensus 265 aiQv~sV~~-qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~-sf~ldsiEVLvlDEADRMLee 342 (691)
T KOG0338|consen 265 AIQVHSVTK-QLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSP-SFNLDSIEVLVLDEADRMLEE 342 (691)
T ss_pred HHHHHHHHH-HHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCC-CccccceeEEEechHHHHHHH
Confidence 999999888 6777778999999999886532 33 456999999999999998743 347999999999999999877
Q ss_pred CCchHHHHHHHHHHHHhhcCCCceEEEEcccCCC-hhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHh
Q 000129 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQA 1558 (2114)
Q Consensus 1480 ~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n-~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~ 1558 (2114)
+ +-..|+.|...++++.|.++||||+.. .++++..--..+..+|.-++...+..+...+..... .. .
T Consensus 343 g------FademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~-~r-----e 410 (691)
T KOG0338|consen 343 G------FADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRP-KR-----E 410 (691)
T ss_pred H------HHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheecc-cc-----c
Confidence 6 888899998888999999999999975 456666544444455543333333222211110000 00 0
Q ss_pred cCHHH-HHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceE
Q 000129 1559 MTKPT-FTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637 (2114)
Q Consensus 1559 ~~~~~-~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~ 1637 (2114)
..++. ...+... .-...+|||+.|+++|..+-- |.-+++..++
T Consensus 411 ~dRea~l~~l~~r-tf~~~~ivFv~tKk~AHRl~I-----------------------------------llGLlgl~ag 454 (691)
T KOG0338|consen 411 GDREAMLASLITR-TFQDRTIVFVRTKKQAHRLRI-----------------------------------LLGLLGLKAG 454 (691)
T ss_pred cccHHHHHHHHHH-hcccceEEEEehHHHHHHHHH-----------------------------------HHHHhhchhh
Confidence 01121 1222222 235679999999999976642 3345677799
Q ss_pred eecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCC
Q 000129 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDN 1717 (2114)
Q Consensus 1638 ~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~ 1717 (2114)
-+||.|++.+|-..++.|++++++|||||++++||+|++++.+|| ||.+|.++..|+||+||+.|+ +.
T Consensus 455 ElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVI----------Ny~mP~t~e~Y~HRVGRTARA--GR 522 (691)
T KOG0338|consen 455 ELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVI----------NYAMPKTIEHYLHRVGRTARA--GR 522 (691)
T ss_pred hhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEE----------eccCchhHHHHHHHhhhhhhc--cc
Confidence 999999999999999999999999999999999999999999999 999999999999999999999 68
Q ss_pred ceEEEEEeecCcHHHHHHHH
Q 000129 1718 SGKCVILCHAPRKEYYKKFL 1737 (2114)
Q Consensus 1718 ~G~~iil~~~~~~~~~~~~l 1737 (2114)
.|.+|.|+.+.+...++.++
T Consensus 523 aGrsVtlvgE~dRkllK~ii 542 (691)
T KOG0338|consen 523 AGRSVTLVGESDRKLLKEII 542 (691)
T ss_pred CcceEEEeccccHHHHHHHH
Confidence 99999999999887777766
No 47
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=6e-40 Score=385.71 Aligned_cols=345 Identities=20% Similarity=0.305 Sum_probs=270.6
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
|.+....++ .||.++|++|+++++.++.+. ++++.|-||+|||++|++|+++.+.+.+.. ...+..+++|+||
T Consensus 89 LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gk-Dvl~~AKTGtGKTlAFLiPaie~l~k~~~~----~r~~~~vlIi~PT 163 (543)
T KOG0342|consen 89 LSPLTLKAIKEMGFETMTPVQQKTIPPLLEGK-DVLAAAKTGTGKTLAFLLPAIELLRKLKFK----PRNGTGVLIICPT 163 (543)
T ss_pred cCHHHHHHHHhcCccchhHHHHhhcCccCCCc-cceeeeccCCCceeeehhHHHHHHHhcccC----CCCCeeEEEeccc
Confidence 444455555 799999999999999999887 599999999999999999999999876543 2366789999999
Q ss_pred HHHHHHHHHHHHHhhccC-CcEEEEEeCCCccChhh---hccceEEEcCHhHH-HHHHhccCCCcccccccEEEEecccc
Q 000129 560 KALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~ 634 (2114)
|+||.|++...++++... ++.|+.+.|+.+..... ...++|+|+||+++ |++.+... ....+++++|+||||+
T Consensus 164 RELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~--f~~r~~k~lvlDEADr 241 (543)
T KOG0342|consen 164 RELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSG--FLFRNLKCLVLDEADR 241 (543)
T ss_pred HHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCc--chhhccceeEeecchh
Confidence 999999999999999877 99999999998876432 35899999999998 66666554 5667789999999999
Q ss_pred ccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccC-ceEeecCC-cccc---cceeEEEeec
Q 000129 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEK-GLFYFDNS-YRPV---PLSQQYIGIQ 708 (2114)
Q Consensus 635 l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~-~~~~f~~~-~rpv---~l~~~~~~~~ 708 (2114)
+.| +|...++.|+.-+ +...|.+++|||.|. .|.+..+..+.. ++|.-... -.+. .+.|-|+..+
T Consensus 242 lLd~GF~~di~~Ii~~l-------pk~rqt~LFSAT~~~--kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~ 312 (543)
T KOG0342|consen 242 LLDIGFEEDVEQIIKIL-------PKQRQTLLFSATQPS--KVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAP 312 (543)
T ss_pred hhhcccHHHHHHHHHhc-------cccceeeEeeCCCcH--HHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEecc
Confidence 999 7888888777654 577889999999984 444444443332 33321111 1111 2444343322
Q ss_pred cCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcch
Q 000129 709 VKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSND 788 (2114)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~ 788 (2114)
.. .++. .+|..+.++....++||||+|...+..+|..|....+.
T Consensus 313 ~~---~~f~----ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlp----------------------------- 356 (543)
T KOG0342|consen 313 SD---SRFS----LLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLP----------------------------- 356 (543)
T ss_pred cc---chHH----HHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCc-----------------------------
Confidence 22 2222 34555556665689999999999999999888743322
Q ss_pred hhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhh
Q 000129 789 LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQML 868 (2114)
Q Consensus 789 L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~ 868 (2114)
|...||++++..|..+...|++.+--|||||+++|||+|+|+|++||. |+|++ .+.+|+||+
T Consensus 357 --------v~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ----~~~P~------d~~~YIHRv 418 (543)
T KOG0342|consen 357 --------VLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQ----YDPPS------DPEQYIHRV 418 (543)
T ss_pred --------hhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEE----eCCCC------CHHHHHHHh
Confidence 334499999999999999999999999999999999999999999999 78777 788999999
Q ss_pred cccCCCCCCCceEEEEEcCCCcHHHHHHhh
Q 000129 869 GRAGRPQYDSYGEGIIITGHSELRYYLSLM 898 (2114)
Q Consensus 869 GRAGR~g~d~~G~~iil~~~~e~~~~~~ll 898 (2114)
||+||.| +.|+++++..+.|+.++..+-
T Consensus 419 GRTaR~g--k~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 419 GRTAREG--KEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred ccccccC--CCceEEEEeChhHHHHHHHHh
Confidence 9999976 889999999999987765543
No 48
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=9.5e-41 Score=403.65 Aligned_cols=392 Identities=28% Similarity=0.407 Sum_probs=304.0
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
+|-|+|+.++.+ +..++.|||+|-|.+|||.+|..+|...+.... ++||..|.|||.+|.++++..-|
T Consensus 129 ~LDpFQ~~aI~C-idr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQ-----------RVIYTSPIKALSNQKYREl~~EF 196 (1041)
T KOG0948|consen 129 TLDPFQSTAIKC-IDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQ-----------RVIYTSPIKALSNQKYRELLEEF 196 (1041)
T ss_pred ccCchHhhhhhh-hcCCceEEEEeecCCCcchHHHHHHHHHHHhcC-----------eEEeeChhhhhcchhHHHHHHHh
Confidence 788999999986 577788999999999999999999999987643 89999999999999999998877
Q ss_pred ccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-CCchhHHHHHHHHHHH
Q 000129 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQ 653 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~rl~~~ 653 (2114)
+ .|+..|||.+.+. .+.-+|+|.|-+..++-+.+ ..++.|.+||+||+|.|.| +||-++|.-+--
T Consensus 197 ~----DVGLMTGDVTInP----~ASCLVMTTEILRsMLYRGS--EvmrEVaWVIFDEIHYMRDkERGVVWEETIIl---- 262 (1041)
T KOG0948|consen 197 K----DVGLMTGDVTINP----DASCLVMTTEILRSMLYRGS--EVMREVAWVIFDEIHYMRDKERGVVWEETIIL---- 262 (1041)
T ss_pred c----ccceeecceeeCC----CCceeeeHHHHHHHHHhccc--hHhheeeeEEeeeehhccccccceeeeeeEEe----
Confidence 6 4888999998875 46788999998854444433 5788999999999999999 899999865432
Q ss_pred HhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEe---------eccCchh--HHH-HHhhH
Q 000129 654 IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIG---------IQVKKPL--QRF-QLMND 721 (2114)
Q Consensus 654 ~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~---------~~~~~~~--~~~-~~~~~ 721 (2114)
++.++|.|+||||+||+.++|+|+..-...++.+....|||.||++.++. +.++... ..+ .+|.-
T Consensus 263 ---lP~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~ 339 (1041)
T KOG0948|consen 263 ---LPDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSV 339 (1041)
T ss_pred ---ccccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHH
Confidence 47899999999999999999999998778889999999999999876442 1222111 111 11110
Q ss_pred ------------------------------HHHHHHHHHh--CCCeEEEEecChHHHHHHHHHHHHHhhccccccccccc
Q 000129 722 ------------------------------LCYEKVVAVA--GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKE 769 (2114)
Q Consensus 722 ------------------------------~~~~~i~~~~--~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~ 769 (2114)
-+|..+.-.. ...|+|||+-|+++|+..|..+.+..+..+.-.
T Consensus 340 l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk----- 414 (1041)
T KOG0948|consen 340 LRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEK----- 414 (1041)
T ss_pred hhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHH-----
Confidence 1223222222 246999999999999999998877654322110
Q ss_pred CchhHHHHHhhhccc--------CcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEE
Q 000129 770 DSVSREILQSHTDMV--------KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTV 841 (2114)
Q Consensus 770 ~~~~~~~l~~~~~~~--------~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~v 841 (2114)
..-.++........ +-..+--++.+|||+||+||-+--++.|+-+|..|-++||+||-|++.|+|.||.+|
T Consensus 415 -~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTV 493 (1041)
T KOG0948|consen 415 -ELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTV 493 (1041)
T ss_pred -HHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeE
Confidence 01111222111111 123445567899999999999999999999999999999999999999999999999
Q ss_pred EEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCC-cHHHHHHhhc-CCCcccchhhHhhHHHHHHH
Q 000129 842 IIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS-ELRYYLSLMN-QQLPIESQFVSKLADQLNAE 919 (2114)
Q Consensus 842 VI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~-e~~~~~~ll~-~~~pies~l~~~l~d~l~~e 919 (2114)
|+-....||+.. +.++|--+|+||.|||||.|.|..|.+|++.+.. +.+..+.++. +.-|+-|.|+-.....||.-
T Consensus 494 vFT~~rKfDG~~--fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG~aD~LnSaFhLtYnMiLNLl 571 (1041)
T KOG0948|consen 494 VFTAVRKFDGKK--FRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKGSADPLNSAFHLTYNMILNLL 571 (1041)
T ss_pred EEeeccccCCcc--eeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhcCCCcchhhhhhhHHHHHHHHH
Confidence 998888899887 4568999999999999999999999999999885 4445555554 45689999987776777765
Q ss_pred Hhhc
Q 000129 920 IVLG 923 (2114)
Q Consensus 920 i~~~ 923 (2114)
-+.|
T Consensus 572 RvEe 575 (1041)
T KOG0948|consen 572 RVEE 575 (1041)
T ss_pred HHcc
Confidence 4444
No 49
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=4.2e-39 Score=411.56 Aligned_cols=349 Identities=17% Similarity=0.270 Sum_probs=257.0
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHH
Q 000129 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (2114)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~ 1404 (2114)
.+....++.++. ||..|+|+|.++++.++++.+ ++++||||||||++|++|+++.+...... .++||++|+++|+.
T Consensus 34 ~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d-~ii~apTGsGKT~~~~l~~l~~~~~~~~~--~~~lil~Pt~~L~~ 110 (401)
T PTZ00424 34 KLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYD-TIGQAQSGTGKTATFVIAALQLIDYDLNA--CQALILAPTRELAQ 110 (401)
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCC-EEEECCCCChHHHHHHHHHHHHhcCCCCC--ceEEEECCCHHHHH
Confidence 455667778877 799999999999999998665 89999999999999999999988653233 38999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcCCcccc--hhhc-cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCC
Q 000129 1405 ERYRDWEIKFGQGLGMRVVELTGETAMD--LKLL-EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2114)
Q Consensus 1405 q~~~~~~~~f~~~~g~~v~~l~G~~~~~--~~~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g 1481 (2114)
|+.+.+. .++...+..+..+.|+.... ...+ ...+|+|+||+++..++++ ....++++++||+||+|++.+..
T Consensus 111 Q~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~--~~~~l~~i~lvViDEah~~~~~~- 186 (401)
T PTZ00424 111 QIQKVVL-ALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDK--RHLRVDDLKLFILDEADEMLSRG- 186 (401)
T ss_pred HHHHHHH-HHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHh--CCcccccccEEEEecHHHHHhcc-
Confidence 9999888 46555677888888876543 2222 3459999999998877765 33468899999999999987543
Q ss_pred chHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcC
Q 000129 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMT 1560 (2114)
Q Consensus 1482 ~~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~ 1560 (2114)
+...+..+..+++...|++++|||+++. .++...+...+..+...........+...+.......+ .
T Consensus 187 -----~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----- 254 (401)
T PTZ00424 187 -----FKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEW--K----- 254 (401)
T ss_pred -----hHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHH--H-----
Confidence 1222333445557789999999999873 23333222222212111111111112222111111000 0
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeec
Q 000129 1561 KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLH 1640 (2114)
Q Consensus 1561 ~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H 1640 (2114)
......+... ....++||||+|++.|..++..|.. ...++..+|
T Consensus 255 ~~~l~~~~~~-~~~~~~ivF~~t~~~~~~l~~~l~~-----------------------------------~~~~~~~~h 298 (401)
T PTZ00424 255 FDTLCDLYET-LTITQAIIYCNTRRKVDYLTKKMHE-----------------------------------RDFTVSCMH 298 (401)
T ss_pred HHHHHHHHHh-cCCCeEEEEecCcHHHHHHHHHHHH-----------------------------------CCCcEEEEe
Confidence 1111222222 3456899999999999888865522 234689999
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceE
Q 000129 1641 EGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGK 1720 (2114)
Q Consensus 1641 ~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~ 1720 (2114)
|+|+..+|..+++.|++|+++|||||+++++|+|+|++.+|| +++.|.+..+|+||+|||||. +..|.
T Consensus 299 ~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI----------~~~~p~s~~~y~qr~GRagR~--g~~G~ 366 (401)
T PTZ00424 299 GDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVI----------NYDLPASPENYIHRIGRSGRF--GRKGV 366 (401)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEE----------EECCCCCHHHEeecccccccC--CCCce
Confidence 999999999999999999999999999999999999999999 788999999999999999997 67899
Q ss_pred EEEEeecCcHHHHHHHHHhcc
Q 000129 1721 CVILCHAPRKEYYKKFLRLTQ 1741 (2114)
Q Consensus 1721 ~iil~~~~~~~~~~~~lRl~~ 1741 (2114)
|++++.+.+.+.++++.+...
T Consensus 367 ~i~l~~~~~~~~~~~~e~~~~ 387 (401)
T PTZ00424 367 AINFVTPDDIEQLKEIERHYN 387 (401)
T ss_pred EEEEEcHHHHHHHHHHHHHHC
Confidence 999999988888887775443
No 50
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=8.9e-39 Score=418.32 Aligned_cols=363 Identities=20% Similarity=0.256 Sum_probs=259.5
Q ss_pred cCcceEEecCCCCCCCCCCCCCccccCCC--ChhhHhhc-------------CCCCCCCHHHHHHHHHHHcCCCcEEEEc
Q 000129 454 NKGYEEIHVPAMKHKPLDPNEKLIKISEM--PEWAQPAF-------------KGMTQLNRVQSRVYKSALSSADNILLCA 518 (2114)
Q Consensus 454 ~~~~eei~vp~~~~~~~~~~~~l~~i~~l--p~~~~~~f-------------~g~~~l~~iQ~~~i~~~l~~~~nvlv~A 518 (2114)
.+.|..-..|+...+-.+....+..|+.. +.|....| .|+..|+|+|.++|+.++.+.+ +|+++
T Consensus 404 ~~~~~~~~~p~~~~~~~~~~~~~~~i~~~~~~~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrD-VLVim 482 (1195)
T PLN03137 404 VDRYGISSGPVEREPYVPKFIDVTYTEGSNDKKWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYD-VFVLM 482 (1195)
T ss_pred hhhhcccCCCcccCccccccceeeeecCCCCccccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCC-EEEEc
Confidence 34555555666544333333344444433 33554333 4899999999999999988765 99999
Q ss_pred cCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh----
Q 000129 519 PTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---- 594 (2114)
Q Consensus 519 PTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---- 594 (2114)
|||+|||+||++|++.. ...+|||+|+++|+.+++..+.. .|+++..+.|+.....+.
T Consensus 483 PTGSGKSLcYQLPAL~~--------------~GiTLVISPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr 544 (1195)
T PLN03137 483 PTGGGKSLTYQLPALIC--------------PGITLVISPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQ 544 (1195)
T ss_pred CCCccHHHHHHHHHHHc--------------CCcEEEEeCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHH
Confidence 99999999999999853 12699999999999988777655 489999999987655432
Q ss_pred -----hccceEEEcCHhHH---HHHHhccCCCcccccccEEEEeccccccc---CCchhHHHHHHHHHHHHhhccccccE
Q 000129 595 -----IEETQIIVTTPEKW---DIITRKSGDRTYTQLVKLLIIDEIHLLHD---NRGPVLESIVARTVRQIETTKEHIRL 663 (2114)
Q Consensus 595 -----~~~~~IiV~TPek~---d~l~r~~~~~~~l~~v~liIiDEaH~l~d---~rg~~le~iv~rl~~~~~~~~~~~ri 663 (2114)
....+|+|+|||++ +.+.+..........+.+|||||||++.+ ++++.+..+ . .+....+.+++
T Consensus 545 ~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L-~----~Lr~~fp~vPi 619 (1195)
T PLN03137 545 ELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGL-G----ILKQKFPNIPV 619 (1195)
T ss_pred HHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHH-H----HHHHhCCCCCe
Confidence 14679999999997 33444332222234589999999999875 355555432 1 11223457889
Q ss_pred EEEccccCC--hHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEec
Q 000129 664 VGLSATLPN--YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVH 741 (2114)
Q Consensus 664 v~lSATlpn--~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~ 741 (2114)
++||||++. .+++...|+.. . ...|..++....+...++ .+. ...... +...+.....+.+.||||+
T Consensus 620 lALTATAT~~V~eDI~~~L~l~--~-~~vfr~Sf~RpNL~y~Vv---~k~-kk~le~----L~~~I~~~~~~esgIIYC~ 688 (1195)
T PLN03137 620 LALTATATASVKEDVVQALGLV--N-CVVFRQSFNRPNLWYSVV---PKT-KKCLED----IDKFIKENHFDECGIIYCL 688 (1195)
T ss_pred EEEEecCCHHHHHHHHHHcCCC--C-cEEeecccCccceEEEEe---ccc-hhHHHH----HHHHHHhcccCCCceeEeC
Confidence 999999874 35666666532 2 334444443333322222 111 111111 2222222223567999999
Q ss_pred ChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCc
Q 000129 742 SRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV 821 (2114)
Q Consensus 742 sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i 821 (2114)
||++|+.++..|...+ ..+++|||||++.+|..+++.|.+|.+
T Consensus 689 SRke~E~LAe~L~~~G-------------------------------------ika~~YHAGLs~eeR~~vqe~F~~Gei 731 (1195)
T PLN03137 689 SRMDCEKVAERLQEFG-------------------------------------HKAAFYHGSMDPAQRAFVQKQWSKDEI 731 (1195)
T ss_pred chhHHHHHHHHHHHCC-------------------------------------CCeeeeeCCCCHHHHHHHHHHHhcCCC
Confidence 9999999999987644 236788999999999999999999999
Q ss_pred eEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcHHHHHHhhcC
Q 000129 822 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQ 900 (2114)
Q Consensus 822 ~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~~ll~~ 900 (2114)
+|||||++++||||+|+|++||+ |+.+. |+.+|+||+|||||.| ..|.|+++++..+...+..++.+
T Consensus 732 ~VLVATdAFGMGIDkPDVR~VIH----ydlPk------SiEsYyQriGRAGRDG--~~g~cILlys~~D~~~~~~lI~~ 798 (1195)
T PLN03137 732 NIICATVAFGMGINKPDVRFVIH----HSLPK------SIEGYHQECGRAGRDG--QRSSCVLYYSYSDYIRVKHMISQ 798 (1195)
T ss_pred cEEEEechhhcCCCccCCcEEEE----cCCCC------CHHHHHhhhcccCCCC--CCceEEEEecHHHHHHHHHHHhc
Confidence 99999999999999999999999 77776 8889999999999988 67999999998887777777654
No 51
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2.9e-39 Score=415.87 Aligned_cols=336 Identities=19% Similarity=0.270 Sum_probs=253.9
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc--CCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000129 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS--ETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~--~~~~~k~l~I~Ptr~La~q~~~~~~~~f~ 1415 (2114)
||..|+++|.++++.++++. +++++||||||||++|++|+++++.... ..+.+++||++||++||.|+++.+. .+.
T Consensus 20 g~~~p~~iQ~~ai~~~~~g~-d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~-~l~ 97 (434)
T PRK11192 20 GYTRPTAIQAEAIPPALDGR-DVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQAR-ELA 97 (434)
T ss_pred CCCCCCHHHHHHHHHHhCCC-CEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHH-HHH
Confidence 79999999999999999865 5999999999999999999999886521 1223599999999999999999998 566
Q ss_pred CCCCcEEEEEcCCcccchh---hccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHH
Q 000129 1416 QGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMR 1492 (2114)
Q Consensus 1416 ~~~g~~v~~l~G~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~ 1492 (2114)
...++++..++|+...... .....+|+|+||+++..++.. ....++++++||+||||++.+.+ +...+.
T Consensus 98 ~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~--~~~~~~~v~~lViDEah~~l~~~------~~~~~~ 169 (434)
T PRK11192 98 KHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKE--ENFDCRAVETLILDEADRMLDMG------FAQDIE 169 (434)
T ss_pred ccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHc--CCcCcccCCEEEEECHHHHhCCC------cHHHHH
Confidence 6678999999998765422 234569999999999887765 23357889999999999998654 223333
Q ss_pred HHHhhcCCCceEEEEcccCCC--hhHHHHHhcCCCCceeecCCCCCcc-CcEEEEecccccchHHHHHhcCHHHHHHHHH
Q 000129 1493 YIASQVENKIRIVALSTSLAN--AKDLGEWIGATSHGLFNFPPGVRPV-PLEIHIQGVDITNFEARMQAMTKPTFTAIVQ 1569 (2114)
Q Consensus 1493 ~i~~~~~~~~riV~lSATl~n--~~dla~wl~~~~~~~~~f~~~~rpv-~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 1569 (2114)
.+....+...|++++|||++. ..++..++...+..+ ...+..+.. .+...+.... ..... ...+..+..
T Consensus 170 ~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~i~~~~~~~~--~~~~k-----~~~l~~l~~ 241 (434)
T PRK11192 170 TIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEV-EAEPSRRERKKIHQWYYRAD--DLEHK-----TALLCHLLK 241 (434)
T ss_pred HHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEE-EecCCcccccCceEEEEEeC--CHHHH-----HHHHHHHHh
Confidence 444445667899999999964 457787776554322 222222111 1111111111 11110 111222222
Q ss_pred HhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHH
Q 000129 1570 HAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQE 1649 (2114)
Q Consensus 1570 ~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~ 1649 (2114)
. ...+++||||+++..|..++..|.. .+..+.++||+|++.+|.
T Consensus 242 ~-~~~~~~lVF~~s~~~~~~l~~~L~~-----------------------------------~~~~~~~l~g~~~~~~R~ 285 (434)
T PRK11192 242 Q-PEVTRSIVFVRTRERVHELAGWLRK-----------------------------------AGINCCYLEGEMVQAKRN 285 (434)
T ss_pred c-CCCCeEEEEeCChHHHHHHHHHHHh-----------------------------------CCCCEEEecCCCCHHHHH
Confidence 2 2467899999999999999876632 234589999999999999
Q ss_pred HHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCc
Q 000129 1650 VVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1650 ~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~ 1729 (2114)
.+++.|++|+++|||||+++++|+|+|++.+|| +++.|.+...|+||+|||||. +..|.|++++...+
T Consensus 286 ~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI----------~~d~p~s~~~yiqr~GR~gR~--g~~g~ai~l~~~~d 353 (434)
T PRK11192 286 EAIKRLTDGRVNVLVATDVAARGIDIDDVSHVI----------NFDMPRSADTYLHRIGRTGRA--GRKGTAISLVEAHD 353 (434)
T ss_pred HHHHHHhCCCCcEEEEccccccCccCCCCCEEE----------EECCCCCHHHHhhcccccccC--CCCceEEEEecHHH
Confidence 999999999999999999999999999999999 899999999999999999998 67899999998777
Q ss_pred HHHHHHHHHh
Q 000129 1730 KEYYKKFLRL 1739 (2114)
Q Consensus 1730 ~~~~~~~lRl 1739 (2114)
...+.++.+.
T Consensus 354 ~~~~~~i~~~ 363 (434)
T PRK11192 354 HLLLGKIERY 363 (434)
T ss_pred HHHHHHHHHH
Confidence 6666655543
No 52
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.3e-39 Score=419.99 Aligned_cols=346 Identities=21% Similarity=0.304 Sum_probs=255.1
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc-----CCCceEEEEEcccH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-----ETGVMRAVYIAPLE 1400 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~-----~~~~~k~l~I~Ptr 1400 (2114)
|.....+.+.. ||..|||+|.++|+.++++.+ ++++||||||||++|++|+++.+.... ....+++|||+||+
T Consensus 16 l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~D-vi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTr 94 (572)
T PRK04537 16 LHPALLAGLESAGFTRCTPIQALTLPVALPGGD-VAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTR 94 (572)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCC-EEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcH
Confidence 44455555544 799999999999999998655 999999999999999999999886421 11135999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEcCCcccch--hhcc-CCcEEEEChhhHHHHHhhhcccccccceeEEEeccccccc
Q 000129 1401 ALAKERYRDWEIKFGQGLGMRVVELTGETAMDL--KLLE-KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (2114)
Q Consensus 1401 ~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~--~~l~-~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~ 1477 (2114)
+||.|+++.+. .|+...++++..++|+...+. ..+. ..+|||+||++|..+++++. ...+..+++|||||||++.
T Consensus 95 eLa~Qi~~~~~-~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~-~~~l~~v~~lViDEAh~ll 172 (572)
T PRK04537 95 ELAIQIHKDAV-KFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHK-VVSLHACEICVLDEADRMF 172 (572)
T ss_pred HHHHHHHHHHH-HHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhcc-ccchhheeeeEecCHHHHh
Confidence 99999999998 677667999999999877652 2333 45999999999988876532 2357889999999999987
Q ss_pred CCCCchHHHHHHHHHHHHhhcCC--CceEEEEcccCCCh-hHH-HHHhcCCCCceeecCCCCCccCcEEEEecccccchH
Q 000129 1478 GQGGPVLEVIVSRMRYIASQVEN--KIRIVALSTSLANA-KDL-GEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFE 1553 (2114)
Q Consensus 1478 ~~~g~~le~i~srl~~i~~~~~~--~~riV~lSATl~n~-~dl-a~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~ 1553 (2114)
+.. +...+..+...++. ..|++++|||+++. ..+ ..++... ..+...........+...+.. ....
T Consensus 173 d~g------f~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p-~~i~v~~~~~~~~~i~q~~~~---~~~~ 242 (572)
T PRK04537 173 DLG------FIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEP-EKLVVETETITAARVRQRIYF---PADE 242 (572)
T ss_pred hcc------hHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCC-cEEEeccccccccceeEEEEe---cCHH
Confidence 654 44444455444443 67999999999763 233 3344322 112211111111111111111 1111
Q ss_pred HHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhc
Q 000129 1554 ARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLR 1633 (2114)
Q Consensus 1554 ~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~ 1633 (2114)
.. ...+..++.. ..+.++||||+|+..|+.++..|.. .+
T Consensus 243 ~k-----~~~L~~ll~~-~~~~k~LVF~nt~~~ae~l~~~L~~-----------------------------------~g 281 (572)
T PRK04537 243 EK-----QTLLLGLLSR-SEGARTMVFVNTKAFVERVARTLER-----------------------------------HG 281 (572)
T ss_pred HH-----HHHHHHHHhc-ccCCcEEEEeCCHHHHHHHHHHHHH-----------------------------------cC
Confidence 11 0111222222 4567899999999999999876632 13
Q ss_pred cceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCC
Q 000129 1634 HGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRP 1713 (2114)
Q Consensus 1634 ~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~ 1713 (2114)
..+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++.+|| +++.|.+..+|+||+|||||.
T Consensus 282 ~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VI----------nyd~P~s~~~yvqRiGRaGR~ 351 (572)
T PRK04537 282 YRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVY----------NYDLPFDAEDYVHRIGRTARL 351 (572)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEE----------EcCCCCCHHHHhhhhcccccC
Confidence 4689999999999999999999999999999999999999999999999 899999999999999999998
Q ss_pred CCCCceEEEEEeecCcHHHHHHHHH
Q 000129 1714 LLDNSGKCVILCHAPRKEYYKKFLR 1738 (2114)
Q Consensus 1714 ~~~~~G~~iil~~~~~~~~~~~~lR 1738 (2114)
+..|.|++|+.+.+...++.+.+
T Consensus 352 --G~~G~ai~~~~~~~~~~l~~i~~ 374 (572)
T PRK04537 352 --GEEGDAISFACERYAMSLPDIEA 374 (572)
T ss_pred --CCCceEEEEecHHHHHHHHHHHH
Confidence 57899999998766555555543
No 53
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=3.4e-39 Score=423.33 Aligned_cols=336 Identities=21% Similarity=0.291 Sum_probs=253.0
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
|++.+.+++ .||.+|+|+|.++++.++.+. ++|++||||||||++|.+|+++.+.... ..+++||++||
T Consensus 13 L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~-dvl~~ApTGsGKT~af~lpll~~l~~~~--------~~~~~LIL~PT 83 (629)
T PRK11634 13 LKAPILEALNDLGYEKPSPIQAECIPHLLNGR-DVLGMAQTGSGKTAAFSLPLLHNLDPEL--------KAPQILVLAPT 83 (629)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCC-CEEEEcCCCCcHHHHHHHHHHHHhhhcc--------CCCeEEEEeCc
Confidence 566666666 699999999999999988765 5999999999999999999999875431 24589999999
Q ss_pred HHHHHHHHHHHHHhhccC-CcEEEEEeCCCccChhh---hccceEEEcCHhHH-HHHHhccCCCcccccccEEEEecccc
Q 000129 560 KALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~ 634 (2114)
++||.|+++.+.++.+.+ ++.+..++|+.+...+. ...++|+|+||+++ +.+.+.. ..++++++|||||||.
T Consensus 84 reLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~---l~l~~l~~lVlDEAd~ 160 (629)
T PRK11634 84 RELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGT---LDLSKLSGLVLDEADE 160 (629)
T ss_pred HHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCC---cchhhceEEEeccHHH
Confidence 999999999998877654 79999999987765432 34689999999997 6665543 4578899999999998
Q ss_pred ccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCCh-HHHHHHHhccccCceEeecCCc-ccccceeEEEeeccCc
Q 000129 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY-EDVALFLRVNLEKGLFYFDNSY-RPVPLSQQYIGIQVKK 711 (2114)
Q Consensus 635 l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~-~dva~~l~~~~~~~~~~f~~~~-rpv~l~~~~~~~~~~~ 711 (2114)
+.+ .+...++.++.. .+...|++++|||+|+. ..+...+..++ . .+...... ....+.+.++.+...
T Consensus 161 ml~~gf~~di~~Il~~-------lp~~~q~llfSAT~p~~i~~i~~~~l~~~-~-~i~i~~~~~~~~~i~q~~~~v~~~- 230 (629)
T PRK11634 161 MLRMGFIEDVETIMAQ-------IPEGHQTALFSATMPEAIRRITRRFMKEP-Q-EVRIQSSVTTRPDISQSYWTVWGM- 230 (629)
T ss_pred HhhcccHHHHHHHHHh-------CCCCCeEEEEEccCChhHHHHHHHHcCCC-e-EEEccCccccCCceEEEEEEechh-
Confidence 876 565555555443 46678999999999862 22333222221 1 11111111 112233444433221
Q ss_pred hhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhh
Q 000129 712 PLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791 (2114)
Q Consensus 712 ~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ 791 (2114)
.+...+.. ++......++||||+|+..+..++..|...+
T Consensus 231 --~k~~~L~~-----~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g---------------------------------- 269 (629)
T PRK11634 231 --RKNEALVR-----FLEAEDFDAAIIFVRTKNATLEVAEALERNG---------------------------------- 269 (629)
T ss_pred --hHHHHHHH-----HHHhcCCCCEEEEeccHHHHHHHHHHHHhCC----------------------------------
Confidence 12222221 2233345789999999999999999887643
Q ss_pred hccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhccc
Q 000129 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRA 871 (2114)
Q Consensus 792 ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRA 871 (2114)
+.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+ ||.+. +..+|+||+|||
T Consensus 270 ---~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~----~d~P~------~~e~yvqRiGRt 336 (629)
T PRK11634 270 ---YNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVN----YDIPM------DSESYVHRIGRT 336 (629)
T ss_pred ---CCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEE----eCCCC------CHHHHHHHhccc
Confidence 23566799999999999999999999999999999999999999999999 66654 778899999999
Q ss_pred CCCCCCCceEEEEEcCCCcHHHHH
Q 000129 872 GRPQYDSYGEGIIITGHSELRYYL 895 (2114)
Q Consensus 872 GR~g~d~~G~~iil~~~~e~~~~~ 895 (2114)
||.| ..|.++++++..+...+.
T Consensus 337 GRaG--r~G~ai~~v~~~e~~~l~ 358 (629)
T PRK11634 337 GRAG--RAGRALLFVENRERRLLR 358 (629)
T ss_pred cCCC--CcceEEEEechHHHHHHH
Confidence 9987 679999999887654443
No 54
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.2e-39 Score=415.74 Aligned_cols=346 Identities=21% Similarity=0.323 Sum_probs=266.6
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhc-cCCCceEEEEEcccHHHHH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA-SETGVMRAVYIAPLEALAK 1404 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~-~~~~~~k~l~I~Ptr~La~ 1404 (2114)
|....+..+.. ||..|+|||.+++|.++.+.+ +++.|+||||||++|.+|+++.+... ..... .+|+++|||+||.
T Consensus 36 l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~D-vi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~-~aLil~PTRELA~ 113 (513)
T COG0513 36 LSPELLQALKDLGFEEPTPIQLAAIPLILAGRD-VLGQAQTGTGKTAAFLLPLLQKILKSVERKYV-SALILAPTRELAV 113 (513)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCC-EEEECCCCChHHHHHHHHHHHHHhcccccCCC-ceEEECCCHHHHH
Confidence 45566666665 899999999999999999755 99999999999999999999998742 22221 2999999999999
Q ss_pred HHHHHHHHHhcCCC-CcEEEEEcCCcccc--hhhccC-CcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCC
Q 000129 1405 ERYRDWEIKFGQGL-GMRVVELTGETAMD--LKLLEK-GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG 1480 (2114)
Q Consensus 1405 q~~~~~~~~f~~~~-g~~v~~l~G~~~~~--~~~l~~-~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~ 1480 (2114)
|+++.+. .++... ++++..++|+.+.. ...++. .+|+|+||+++..++.+ ....+.++.++|+||||.+.+.+
T Consensus 114 Qi~~~~~-~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~--~~l~l~~v~~lVlDEADrmLd~G 190 (513)
T COG0513 114 QIAEELR-KLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKR--GKLDLSGVETLVLDEADRMLDMG 190 (513)
T ss_pred HHHHHHH-HHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHc--CCcchhhcCEEEeccHhhhhcCC
Confidence 9999998 688776 78999999998765 233443 79999999999998887 35679999999999999999886
Q ss_pred CchHHHHHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhc---CCCCceeecCC-CC--CccCcEEEEecccccchHH
Q 000129 1481 GPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIG---ATSHGLFNFPP-GV--RPVPLEIHIQGVDITNFEA 1554 (2114)
Q Consensus 1481 g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~---~~~~~~~~f~~-~~--rpv~l~~~~~~~~~~~~~~ 1554 (2114)
+...+..+...++.+.|++++|||+++. +..|.. ..+. .+...+ .. -+..+...+..... ...
T Consensus 191 ------f~~~i~~I~~~~p~~~qtllfSAT~~~~--i~~l~~~~l~~p~-~i~v~~~~~~~~~~~i~q~~~~v~~--~~~ 259 (513)
T COG0513 191 ------FIDDIEKILKALPPDRQTLLFSATMPDD--IRELARRYLNDPV-EIEVSVEKLERTLKKIKQFYLEVES--EEE 259 (513)
T ss_pred ------CHHHHHHHHHhCCcccEEEEEecCCCHH--HHHHHHHHccCCc-EEEEccccccccccCceEEEEEeCC--HHH
Confidence 7777777878888899999999999873 333332 2222 222221 11 11122222221111 110
Q ss_pred HHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhcc
Q 000129 1555 RMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRH 1634 (2114)
Q Consensus 1555 ~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~ 1634 (2114)
.. .....++.. ....++||||+|+..|..++..|.. .++
T Consensus 260 k~-----~~L~~ll~~-~~~~~~IVF~~tk~~~~~l~~~l~~-----------------------------------~g~ 298 (513)
T COG0513 260 KL-----ELLLKLLKD-EDEGRVIVFVRTKRLVEELAESLRK-----------------------------------RGF 298 (513)
T ss_pred HH-----HHHHHHHhc-CCCCeEEEEeCcHHHHHHHHHHHHH-----------------------------------CCC
Confidence 11 112222222 2344699999999999998866632 345
Q ss_pred ceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCC
Q 000129 1635 GVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPL 1714 (2114)
Q Consensus 1635 gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~ 1714 (2114)
.+..+||+|++++|..+++.|++|..+|||||++++||||+|++.+|| ||+.|.+..+|+||+||+||+
T Consensus 299 ~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Vi----------nyD~p~~~e~yvHRiGRTgRa- 367 (513)
T COG0513 299 KVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVI----------NYDLPLDPEDYVHRIGRTGRA- 367 (513)
T ss_pred eEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeE----------EccCCCCHHHheeccCccccC-
Confidence 699999999999999999999999999999999999999999999999 999999999999999999998
Q ss_pred CCCceEEEEEeecC-cHHHHHHHHHhcc
Q 000129 1715 LDNSGKCVILCHAP-RKEYYKKFLRLTQ 1741 (2114)
Q Consensus 1715 ~~~~G~~iil~~~~-~~~~~~~~lRl~~ 1741 (2114)
+..|.++.|+.+. +...+.++.+...
T Consensus 368 -G~~G~ai~fv~~~~e~~~l~~ie~~~~ 394 (513)
T COG0513 368 -GRKGVAISFVTEEEEVKKLKRIEKRLE 394 (513)
T ss_pred -CCCCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 5899999999975 6666666665543
No 55
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.2e-39 Score=416.84 Aligned_cols=344 Identities=19% Similarity=0.297 Sum_probs=252.7
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
.|++.+..++ .||.+|+++|.++++.++.+. |+|++||||||||++|++|+++.+........ ...+..++|||+|
T Consensus 93 ~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~-dvi~~apTGSGKTlay~lpil~~l~~~~~~~~-~~~~~~~aLil~P 170 (475)
T PRK01297 93 NLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGH-DAIGRAQTGTGKTAAFLISIINQLLQTPPPKE-RYMGEPRALIIAP 170 (475)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-CEEEECCCCChHHHHHHHHHHHHHHhcCcccc-cccCCceEEEEeC
Confidence 4678888777 799999999999999988775 59999999999999999999999876532110 0112468999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh----hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccc
Q 000129 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ----IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL 634 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~----~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~ 634 (2114)
|++||.|+++.++.+.+..|+++..++|+.+...+. ...++|+|+||+++..+...+. .+++++++|||||+|.
T Consensus 171 treLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~--~~l~~l~~lViDEah~ 248 (475)
T PRK01297 171 TRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGE--VHLDMVEVMVLDEADR 248 (475)
T ss_pred cHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCC--cccccCceEEechHHH
Confidence 999999999999998888899999999987665432 2468999999999844444432 5788999999999999
Q ss_pred ccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCC-hHHHHHHHhccccCceEeecCC-cccccceeEEEeeccCc
Q 000129 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNS-YRPVPLSQQYIGIQVKK 711 (2114)
Q Consensus 635 l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn-~~dva~~l~~~~~~~~~~f~~~-~rpv~l~~~~~~~~~~~ 711 (2114)
+.+ .+.+.+..++..+ . .....|++++|||+++ ...++..+...+ ..+.+... .....+.++++.+....
T Consensus 249 l~~~~~~~~l~~i~~~~----~-~~~~~q~i~~SAT~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~ 321 (475)
T PRK01297 249 MLDMGFIPQVRQIIRQT----P-RKEERQTLLFSATFTDDVMNLAKQWTTDP--AIVEIEPENVASDTVEQHVYAVAGSD 321 (475)
T ss_pred HHhcccHHHHHHHHHhC----C-CCCCceEEEEEeecCHHHHHHHHHhccCC--EEEEeccCcCCCCcccEEEEEecchh
Confidence 876 4544444443322 1 1235689999999874 233333322221 11111211 11122334444333221
Q ss_pred hhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhh
Q 000129 712 PLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791 (2114)
Q Consensus 712 ~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ 791 (2114)
+... ++. +.......++||||++++.++.++..|...+
T Consensus 322 ---k~~~----l~~-ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~---------------------------------- 359 (475)
T PRK01297 322 ---KYKL----LYN-LVTQNPWERVMVFANRKDEVRRIEERLVKDG---------------------------------- 359 (475)
T ss_pred ---HHHH----HHH-HHHhcCCCeEEEEeCCHHHHHHHHHHHHHcC----------------------------------
Confidence 1121 222 2223335699999999999999998886532
Q ss_pred hccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhccc
Q 000129 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRA 871 (2114)
Q Consensus 792 ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRA 871 (2114)
..+..+||+|+..+|..+++.|++|+++|||||+++++|||+|++++||+ |+.+. |..+|+||+|||
T Consensus 360 ---~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~----~~~P~------s~~~y~Qr~GRa 426 (475)
T PRK01297 360 ---INAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVIN----FTLPE------DPDDYVHRIGRT 426 (475)
T ss_pred ---CCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEE----eCCCC------CHHHHHHhhCcc
Confidence 23567799999999999999999999999999999999999999999999 66654 788999999999
Q ss_pred CCCCCCCceEEEEEcCCCcHH
Q 000129 872 GRPQYDSYGEGIIITGHSELR 892 (2114)
Q Consensus 872 GR~g~d~~G~~iil~~~~e~~ 892 (2114)
||.| ..|.++++.+.++..
T Consensus 427 GR~g--~~g~~i~~~~~~d~~ 445 (475)
T PRK01297 427 GRAG--ASGVSISFAGEDDAF 445 (475)
T ss_pred CCCC--CCceEEEEecHHHHH
Confidence 9988 569999998876543
No 56
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.1e-39 Score=373.15 Aligned_cols=347 Identities=20% Similarity=0.299 Sum_probs=268.4
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
|.+|+.+++ .||+.+||+|..+||..+.+.+ |++-||||||||++|++|++..+...... .....+-+|+|+||
T Consensus 13 L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KD-VvveavTGSGKTlAFllP~le~i~rr~~~---~~~~~vgalIIsPT 88 (567)
T KOG0345|consen 13 LSPWLLEALDESGFEKMTPVQAATIPLLLKNKD-VVVEAVTGSGKTLAFLLPMLEIIYRREAK---TPPGQVGALIISPT 88 (567)
T ss_pred ccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCc-eEEEcCCCCCchhhHHHHHHHHHHhhccC---CCccceeEEEecCc
Confidence 458999998 7999999999999998877655 99999999999999999999999554221 11224679999999
Q ss_pred HHHHHHHHHHHHHhhcc-CCcEEEEEeCCCccChhh----hccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccc
Q 000129 560 KALVAEVVGNLSNRLQM-YDVKVRELSGDQTLTRQQ----IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIH 633 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~-~gi~v~~l~Gd~~~~~~~----~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH 633 (2114)
|+||.|+.+....++.. .++++..++|+.+.+... ...++|+|+||+++ |++.+.. ....+..+.++|+||||
T Consensus 89 RELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~-~~l~~rsLe~LVLDEAD 167 (567)
T KOG0345|consen 89 RELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREA-EKLSFRSLEILVLDEAD 167 (567)
T ss_pred HHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchh-hhccccccceEEecchH
Confidence 99999999998888776 578999999998776543 35789999999998 5555544 33446789999999999
Q ss_pred cccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecC----CcccccceeEEEeec
Q 000129 634 LLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDN----SYRPVPLSQQYIGIQ 708 (2114)
Q Consensus 634 ~l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~----~~rpv~l~~~~~~~~ 708 (2114)
.|+| ++...+..|++++ +...|.=++|||.. ..+.+..+..+.+++-+-.. +..|..+...|+.+.
T Consensus 168 rLldmgFe~~~n~ILs~L-------PKQRRTGLFSATq~--~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~ 238 (567)
T KOG0345|consen 168 RLLDMGFEASVNTILSFL-------PKQRRTGLFSATQT--QEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCE 238 (567)
T ss_pred hHhcccHHHHHHHHHHhc-------ccccccccccchhh--HHHHHHHHhhccCceeeeecccccccCchhhcceeeEec
Confidence 9999 7888888888876 45666788999975 45555555444444332211 124656777666554
Q ss_pred cCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcch
Q 000129 709 VKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSND 788 (2114)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~ 788 (2114)
. ..++..+..+ +.....+++|||.+|...++..+..+....
T Consensus 239 a---~eK~~~lv~~-----L~~~~~kK~iVFF~TCasVeYf~~~~~~~l------------------------------- 279 (567)
T KOG0345|consen 239 A---DEKLSQLVHL-----LNNNKDKKCIVFFPTCASVEYFGKLFSRLL------------------------------- 279 (567)
T ss_pred H---HHHHHHHHHH-----HhccccccEEEEecCcchHHHHHHHHHHHh-------------------------------
Confidence 3 2333333222 222346799999999999988887776531
Q ss_pred hhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhh
Q 000129 789 LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQML 868 (2114)
Q Consensus 789 L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~ 868 (2114)
.+..+...||.|.+..|..+++.|++..-.||+||+++|||+|+|++++||+ ||||+ .+..|+||+
T Consensus 280 ----~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ----~DpP~------~~~~FvHR~ 345 (567)
T KOG0345|consen 280 ----KKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQ----FDPPK------DPSSFVHRC 345 (567)
T ss_pred ----CCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEe----cCCCC------ChhHHHhhc
Confidence 1233566799999999999999999988899999999999999999999999 77776 667899999
Q ss_pred cccCCCCCCCceEEEEEcCCCcHHHHHHh
Q 000129 869 GRAGRPQYDSYGEGIIITGHSELRYYLSL 897 (2114)
Q Consensus 869 GRAGR~g~d~~G~~iil~~~~e~~~~~~l 897 (2114)
||+||.| ..|.++++..+.+.+|..-+
T Consensus 346 GRTaR~g--r~G~Aivfl~p~E~aYveFl 372 (567)
T KOG0345|consen 346 GRTARAG--REGNAIVFLNPREEAYVEFL 372 (567)
T ss_pred chhhhcc--CccceEEEecccHHHHHHHH
Confidence 9999988 78999999999776655544
No 57
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=6.5e-39 Score=409.81 Aligned_cols=339 Identities=19% Similarity=0.307 Sum_probs=248.1
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
++++....+ .||..|+|+|.++++.++++.+ ++++||||||||++|++|+++.+.... .+.++||++|+
T Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d-~ii~apTGsGKT~~~~l~~l~~~~~~~--------~~~~~lil~Pt 105 (401)
T PTZ00424 35 LNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYD-TIGQAQSGTGKTATFVIAALQLIDYDL--------NACQALILAPT 105 (401)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCC-EEEECCCCChHHHHHHHHHHHHhcCCC--------CCceEEEECCC
Confidence 455555444 5899999999999999887755 899999999999999999998875321 24589999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccccc
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l 635 (2114)
++|+.|+.+.+.......++.+..++|+....... ...++|+|+||+++ +.+.+.. ..++++++|||||+|++
T Consensus 106 ~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~---~~l~~i~lvViDEah~~ 182 (401)
T PTZ00424 106 RELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRH---LRVDDLKLFILDEADEM 182 (401)
T ss_pred HHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCC---cccccccEEEEecHHHH
Confidence 99999999999888777788898899987654322 34579999999997 4444432 46789999999999998
Q ss_pred cc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEe--ecCCcccccceeEEEeeccCch
Q 000129 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFY--FDNSYRPVPLSQQYIGIQVKKP 712 (2114)
Q Consensus 636 ~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~--f~~~~rpv~l~~~~~~~~~~~~ 712 (2114)
.+ .++..+..++ ....+..|++++|||+|+ ++..+.......+... .........+.+.+..... .
T Consensus 183 ~~~~~~~~~~~i~-------~~~~~~~~~i~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 251 (401)
T PTZ00424 183 LSRGFKGQIYDVF-------KKLPPDVQVALFSATMPN--EILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEK--E 251 (401)
T ss_pred HhcchHHHHHHHH-------hhCCCCcEEEEEEecCCH--HHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecCh--H
Confidence 76 3433333332 234678999999999986 2322222111111111 1111112222333322211 1
Q ss_pred hHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhh
Q 000129 713 LQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDL 792 (2114)
Q Consensus 713 ~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~l 792 (2114)
......+. .+.......++||||+|++.++.++..|...+
T Consensus 252 ~~~~~~l~-----~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~----------------------------------- 291 (401)
T PTZ00424 252 EWKFDTLC-----DLYETLTITQAIIYCNTRRKVDYLTKKMHERD----------------------------------- 291 (401)
T ss_pred HHHHHHHH-----HHHHhcCCCeEEEEecCcHHHHHHHHHHHHCC-----------------------------------
Confidence 11111111 12233346789999999999999988876532
Q ss_pred ccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccC
Q 000129 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (2114)
Q Consensus 793 l~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAG 872 (2114)
.++..+||+|+..+|..+++.|++|+++|||||+++++|||+|++++||+ |+++. |..+|+||+||||
T Consensus 292 --~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~----~~~p~------s~~~y~qr~GRag 359 (401)
T PTZ00424 292 --FTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVIN----YDLPA------SPENYIHRIGRSG 359 (401)
T ss_pred --CcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEE----ECCCC------CHHHEeecccccc
Confidence 35788999999999999999999999999999999999999999999998 66654 7889999999999
Q ss_pred CCCCCCceEEEEEcCCCcHHHHHHh
Q 000129 873 RPQYDSYGEGIIITGHSELRYYLSL 897 (2114)
Q Consensus 873 R~g~d~~G~~iil~~~~e~~~~~~l 897 (2114)
|.| ..|.|++++++++...+..+
T Consensus 360 R~g--~~G~~i~l~~~~~~~~~~~~ 382 (401)
T PTZ00424 360 RFG--RKGVAINFVTPDDIEQLKEI 382 (401)
T ss_pred cCC--CCceEEEEEcHHHHHHHHHH
Confidence 987 67999999998877666543
No 58
>KOG4434 consensus Molecular chaperone SEC63, endoplasmic reticulum translocon component [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-39 Score=361.99 Aligned_cols=299 Identities=31% Similarity=0.514 Sum_probs=252.4
Q ss_pred CCCCChhhHHHHHhcCcccc-----CCCCCcchHHHHHHHHhhCCccc---CCCCCCCh-HHHHHHHHHHHhcCCCCCC-
Q 000129 1812 TPKTRMKGLLEVLASASEYA-----QLPIRPGEEEVVRRLIHHQRFSF---ENPKFTDP-HVKANALLQAHFSRQQVGG- 1881 (2114)
Q Consensus 1812 ~~~~~~~~iL~ils~a~Ef~-----~i~vR~~E~~~l~~L~~~~p~~~---~~~~~~~~-~~K~~lLLqahlsr~~lp~- 1881 (2114)
++++.++.++.+||.+.||. ++.-|..+..+...|.+.++--. ..+....| +.|+.+||+||++|++|++
T Consensus 8 Tp~M~~kR~imVLags~EFdkqyNk~iqeR~tDn~evP~Lirqi~~vN~K~kE~PL~~pYslKaRvlLhahLsRmpl~~d 87 (520)
T KOG4434|consen 8 TPRMEIKRMIMVLAGSFEFDKQYNKEIQERETDNYEVPRLIRQIAGVNDKGKEQPLSQPYSLKARVLLHAHLSRMPLESD 87 (520)
T ss_pred CchhHHHHHHHHHhcccccChhhchhhhccCCcchHHHHHHHHcccccccccCCCccCchhHHHHHHHHHHHhcCCCChh
Confidence 45556788999999999996 57888888888888887765322 22223333 7999999999999999996
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhc----------C--CHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHHH
Q 000129 1882 NLKLDQEEVLLSASRLLQAMVDVISSN----------G--WLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRC 1949 (2114)
Q Consensus 1882 ~l~~D~~~il~~a~rLl~a~vdi~~~~----------g--~l~~al~~m~L~q~i~Qg~w~~~s~L~QLP~i~~~~~~~l 1949 (2114)
.|..|+.+|+.++++|++.||.++... . -+.+.-|||.|++|++||+|...|||+|||||++..++++
T Consensus 88 tLEeDqqfiikkcp~lvqEMVnc~~qLi~May~r~~~r~psiet~eNcmKlspM~vQgLwqfkSPLLQLPHitednL~~~ 167 (520)
T KOG4434|consen 88 TLEEDQQFIIKKCPRLVQEMVNCSQQLIVMAYSRHTRRIPSIETFENCMKLSPMFVQGLWQFKSPLLQLPHITEDNLQHL 167 (520)
T ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccccCccHHHHHHHHhccHHHHHHHHHhcChhhcCCccchHHHHHH
Confidence 699999999999999999999986432 1 2335569999999999999999999999999999999998
Q ss_pred HcCCCCcccCHHHHhcCCHHHHHHHhc-CChHHHHHHHHHHhcCCceEEEE--EEec---cccccCCCcEEEEEEEEEcC
Q 000129 1950 QENPGKSIETVFDLVEMEDDERRELLQ-MSDVQLLDIARFCNRFPNIDMSF--EVQD---SENVRAGEDITLQVVLERDL 2023 (2114)
Q Consensus 1950 ~~~~~~~i~t~~dl~~~~~~~r~~ll~-~~~~~~~~i~~~~~~~P~i~v~~--~v~~---~~~v~~g~~~~l~v~l~r~~ 2023 (2114)
.++- .|+++.||+.|.++.|..||. +++.++++++.++.+||.|.+++ .|.+ .+.+++|..|||+|+|+|..
T Consensus 168 ~KKr--~vks~qdla~lk~e~rr~lL~~LsdeeYe~vM~VLg~mP~~~~~ik~~V~dded~n~~TaG~vVTv~Vtl~R~~ 245 (520)
T KOG4434|consen 168 RKKR--KVKSCQDLAVLKAETRRSLLRSLSDEEYEDVMVVLGMMPRLQIEIKTVVEDDEDKNELTAGCVVTVKVTLRRSR 245 (520)
T ss_pred hhhc--ccccHHHHhhcCHHHHHHHHHhcchHHHHHHHHHHccCcceEEEeeEEEecCCcccceeeeeEEEEEEEEEecc
Confidence 7543 399999999999999999997 99999999999999999987754 4554 35799999999999998820
Q ss_pred ------------------C---CC--------c-----------------------------------------------
Q 000129 2024 ------------------E---GR--------T----------------------------------------------- 2027 (2114)
Q Consensus 2024 ------------------~---~~--------~----------------------------------------------- 2027 (2114)
+ ++ +
T Consensus 246 l~d~~e~~~~d~~k~paedG~~de~n~ea~g~~~eaaa~~~~~~vKK~kpw~K~Kpk~~kkpaq~Q~~qK~v~~~aas~a 325 (520)
T KOG4434|consen 246 LIDPQEAGLADQYKKPAEDGGDDENNLEASGAPEEAAATVEEEEVKKRKPWEKNKPKQKKKPAQGQGQQKFVKKNAASPA 325 (520)
T ss_pred ccChHhhhhhhhhhCchhhCCCcccchhccCChhhhccccchhhhhhcCchhhcCCCcccCccccchhhhhcccccCChh
Confidence 0 00 0
Q ss_pred -----------------------------------------------------------------------ccCccccCC
Q 000129 2028 -----------------------------------------------------------------------EVGPVYSNR 2036 (2114)
Q Consensus 2028 -----------------------------------------------------------------------~~~~v~ap~ 2036 (2114)
...+|||||
T Consensus 326 t~ka~eeea~~~~sD~E~e~~n~Ds~dees~asd~~~D~e~~~~~ddddd~EWe~lqa~~~kr~~lEtKs~~tHtVh~py 405 (520)
T KOG4434|consen 326 TEKALEEEAKDKGSDSEEEETNRDSQDEESDASDRDSDREQDEKQDDDDDAEWEELQASIQKRALLETKSKITHTVHSPY 405 (520)
T ss_pred hhhhhHHHhhhcCcchhhhhhcccccccccccCccccchhhccccccccHHHHHHHHHHHHHHHhhhcccccceeeccCC
Confidence 023799999
Q ss_pred CCCCccccEEEEEEECCCCeEEEEE--EeecccccEEEEEEEecCCCCceEEEEEEEecCccccCeEEEEEEEeecCC
Q 000129 2037 YPKAKEEGWWLVVGDTKTNQLLAIK--RVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCDSYMGCDQEYAFTVDVKEAG 2112 (2114)
Q Consensus 2037 fp~~k~e~Wwlvvgd~~~~~L~~~k--rv~~~~~~~~~l~f~~p~~~G~~~~~l~~~sDsY~G~D~~~~~~~~V~~~~ 2112 (2114)
||.+|.|.||++|.|.++..|+.+- -.++....++.|.|.+|+.||.|+|+|++.||||+|+||..+|+++|.++.
T Consensus 406 FPeEKqEwWW~Yi~drKsrtLlt~PyhV~tL~d~eei~lkF~AP~~pG~Ytytv~lrSDSYmg~dq~~~lKldV~eAk 483 (520)
T KOG4434|consen 406 FPEEKQEWWWLYIADRKSRTLLTMPYHVCTLKDTEEIELKFPAPGKPGNYTYTVFLRSDSYMGLDQIKPLKLDVHEAK 483 (520)
T ss_pred CcchhhheeeeeeecccccceecchhhhhcccccceeEEeccCCCCCCceEEEEEEecccccChhhccceeeeeccCC
Confidence 9999999999999999999999974 446778899999999999999999999999999999999999999998764
No 59
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=2e-38 Score=416.08 Aligned_cols=345 Identities=19% Similarity=0.275 Sum_probs=257.3
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q 1405 (2114)
|..+.++.+.. ||.+|+|+|.++|+.++.++ ++|+.||||||||++|.+|++..+..... .+++||++||++||.|
T Consensus 13 L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~-dvl~~ApTGsGKT~af~lpll~~l~~~~~--~~~~LIL~PTreLa~Q 89 (629)
T PRK11634 13 LKAPILEALNDLGYEKPSPIQAECIPHLLNGR-DVLGMAQTGSGKTAAFSLPLLHNLDPELK--APQILVLAPTRELAVQ 89 (629)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCC-CEEEEcCCCCcHHHHHHHHHHHHhhhccC--CCeEEEEeCcHHHHHH
Confidence 44555666654 79999999999999999865 59999999999999999999998865322 3499999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcccch--hhc-cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCc
Q 000129 1406 RYRDWEIKFGQGLGMRVVELTGETAMDL--KLL-EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP 1482 (2114)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~l~G~~~~~~--~~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~ 1482 (2114)
+++.+........++++..++|+.+.+. +.+ ..++|||+||+++..++++ ....++++++||+||||.+.+..
T Consensus 90 v~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r--~~l~l~~l~~lVlDEAd~ml~~g-- 165 (629)
T PRK11634 90 VAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKR--GTLDLSKLSGLVLDEADEMLRMG-- 165 (629)
T ss_pred HHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHc--CCcchhhceEEEeccHHHHhhcc--
Confidence 9999884333334789999998876552 222 3569999999999877765 34468999999999999887654
Q ss_pred hHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHHHhcCCCCceeecCCCCCcc-CcEEEEecccccchHHHHHhcC
Q 000129 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPV-PLEIHIQGVDITNFEARMQAMT 1560 (2114)
Q Consensus 1483 ~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~wl~~~~~~~~~f~~~~rpv-~l~~~~~~~~~~~~~~~~~~~~ 1560 (2114)
+...+..+...++...|+++||||+++. ..++..+...+..+. ........ .+...+.... . ...
T Consensus 166 ----f~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~-i~~~~~~~~~i~q~~~~v~--~-~~k----- 232 (629)
T PRK11634 166 ----FIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVR-IQSSVTTRPDISQSYWTVW--G-MRK----- 232 (629)
T ss_pred ----cHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEE-ccCccccCCceEEEEEEec--h-hhH-----
Confidence 3444555556667889999999999874 344443333222221 11111111 1111111110 0 000
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeec
Q 000129 1561 KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLH 1640 (2114)
Q Consensus 1561 ~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H 1640 (2114)
...+..++.. ....++||||+|+..|..++..|.. .++.+..+|
T Consensus 233 ~~~L~~~L~~-~~~~~~IVF~~tk~~a~~l~~~L~~-----------------------------------~g~~~~~lh 276 (629)
T PRK11634 233 NEALVRFLEA-EDFDAAIIFVRTKNATLEVAEALER-----------------------------------NGYNSAALN 276 (629)
T ss_pred HHHHHHHHHh-cCCCCEEEEeccHHHHHHHHHHHHh-----------------------------------CCCCEEEee
Confidence 0112222222 3457899999999999999876632 234688999
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceE
Q 000129 1641 EGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGK 1720 (2114)
Q Consensus 1641 ~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~ 1720 (2114)
|+|++.+|..+++.|++|+++|||||+++++|||+|++.+|| +++.|.+..+|+||+|||||. +..|.
T Consensus 277 gd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI----------~~d~P~~~e~yvqRiGRtGRa--Gr~G~ 344 (629)
T PRK11634 277 GDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVV----------NYDIPMDSESYVHRIGRTGRA--GRAGR 344 (629)
T ss_pred CCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEE----------EeCCCCCHHHHHHHhccccCC--CCcce
Confidence 999999999999999999999999999999999999999999 899999999999999999998 67899
Q ss_pred EEEEeecCcHHHHHHHHHh
Q 000129 1721 CVILCHAPRKEYYKKFLRL 1739 (2114)
Q Consensus 1721 ~iil~~~~~~~~~~~~lRl 1739 (2114)
|++++.+.+...++.+.+.
T Consensus 345 ai~~v~~~e~~~l~~ie~~ 363 (629)
T PRK11634 345 ALLFVENRERRLLRNIERT 363 (629)
T ss_pred EEEEechHHHHHHHHHHHH
Confidence 9999998777666666554
No 60
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1.5e-38 Score=410.92 Aligned_cols=352 Identities=22% Similarity=0.329 Sum_probs=283.7
Q ss_pred hHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc---CCCceEEEEEcccHHHHHH
Q 000129 1330 PLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS---ETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1330 ~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~---~~~~~k~l~I~Ptr~La~q 1405 (2114)
+.++..|. .|..|||.|.+||+.+++ +.|+||+||||||||++|.||++..+.... +.+++.+|||+|.|||.+.
T Consensus 10 ~~v~~~~~~~~~~~t~~Q~~a~~~i~~-G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~D 88 (814)
T COG1201 10 PRVREWFKRKFTSLTPPQRYAIPEIHS-GENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNND 88 (814)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhC-CCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHH
Confidence 34445444 699999999999999985 677999999999999999999999998852 2345799999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcccchh--h-ccCCcEEEEChhhHHHHHhhhcccccccceeEEEeccccccc-CCCC
Q 000129 1406 RYRDWEIKFGQGLGMRVVELTGETAMDLK--L-LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG-GQGG 1481 (2114)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~l~G~~~~~~~--~-l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~-~~~g 1481 (2114)
+..++. ..+..+|+.|..-+||++...+ . .+.+||+|+|||.+..++..-+.+..+.++.++||||+|.+. +.+|
T Consensus 89 i~~rL~-~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG 167 (814)
T COG1201 89 IRRRLE-EPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRG 167 (814)
T ss_pred HHHHHH-HHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccc
Confidence 999998 4555679999999999987633 2 234599999999998877655566789999999999999776 4799
Q ss_pred chHHHHHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhcCCC-CceeecCCCCCccCcEEEEecccccchHHHHHhcC
Q 000129 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATS-HGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMT 1560 (2114)
Q Consensus 1482 ~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~~-~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~ 1560 (2114)
..+-.-+.|++.+.. +.|.||+|||+++..++++|++... ...+.-.+..++..+.+.......... ....
T Consensus 168 ~~Lsl~LeRL~~l~~----~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~----~~~~ 239 (814)
T COG1201 168 VQLALSLERLRELAG----DFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYD----EELW 239 (814)
T ss_pred hhhhhhHHHHHhhCc----ccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccc----cchh
Confidence 999999999998842 8999999999999999999998875 222322334444444444333222211 2223
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeec
Q 000129 1561 KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLH 1640 (2114)
Q Consensus 1561 ~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H 1640 (2114)
...+..+...+...+.+|||+|||..|+.++..|... ....|..||
T Consensus 240 ~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~----------------------------------~~~~i~~HH 285 (814)
T COG1201 240 AALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKL----------------------------------GPDIIEVHH 285 (814)
T ss_pred HHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHh----------------------------------cCCceeeec
Confidence 3455666666667789999999999999999777432 125699999
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceE
Q 000129 1641 EGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGK 1720 (2114)
Q Consensus 1641 ~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~ 1720 (2114)
|.+|.+.|..+++.|++|+++++|||++++-|||+..+..|| ++..|.+++.++||+||+|+. .+...+
T Consensus 286 gSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVI----------q~~SP~sV~r~lQRiGRsgHr-~~~~Sk 354 (814)
T COG1201 286 GSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVI----------QLGSPKSVNRFLQRIGRAGHR-LGEVSK 354 (814)
T ss_pred ccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEE----------EeCCcHHHHHHhHhccccccc-cCCccc
Confidence 999999999999999999999999999999999999999999 899999999999999999986 377788
Q ss_pred EEEEeecCcHHHHHHHH
Q 000129 1721 CVILCHAPRKEYYKKFL 1737 (2114)
Q Consensus 1721 ~iil~~~~~~~~~~~~l 1737 (2114)
+++++.+ ..+.++...
T Consensus 355 g~ii~~~-r~dllE~~v 370 (814)
T COG1201 355 GIIIAED-RDDLLECLV 370 (814)
T ss_pred EEEEecC-HHHHHHHHH
Confidence 8888877 555554443
No 61
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.7e-39 Score=364.83 Aligned_cols=343 Identities=19% Similarity=0.308 Sum_probs=268.2
Q ss_pred cCCCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEE
Q 000129 479 ISEMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYV 556 (2114)
Q Consensus 479 i~~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~i 556 (2114)
...|.+|+-+.+ .|++.+||+|..|||.+++|.+ +|-||.||||||.+|.+||++.+..++ .+.-++++
T Consensus 11 ~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrd-cig~AkTGsGKT~AFaLPil~rLsedP--------~giFalvl 81 (442)
T KOG0340|consen 11 ILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRD-CIGCAKTGSGKTAAFALPILNRLSEDP--------YGIFALVL 81 (442)
T ss_pred hcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccc-cccccccCCCcchhhhHHHHHhhccCC--------CcceEEEe
Confidence 345688988877 6899999999999999999977 999999999999999999999998874 34579999
Q ss_pred cccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHH-HHHHhccCC-CcccccccEEEEec
Q 000129 557 APMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGD-RTYTQLVKLLIIDE 631 (2114)
Q Consensus 557 aP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~-d~l~r~~~~-~~~l~~v~liIiDE 631 (2114)
+|||+||-|+.+.|....+.+++++..++|+++.-.+. ...+|++|+|||++ +.+...... ...+++++++|+||
T Consensus 82 TPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDE 161 (442)
T KOG0340|consen 82 TPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDE 161 (442)
T ss_pred cchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecc
Confidence 99999999999999998889999999999998754432 36899999999998 555444222 34578899999999
Q ss_pred cccccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcc----cccceeEEEe
Q 000129 632 IHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYR----PVPLSQQYIG 706 (2114)
Q Consensus 632 aH~l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~r----pv~l~~~~~~ 706 (2114)
|+.+.+ .+...++.+.+. .+...|.++||||+.+ .+....+.....+..++....- +-.|.+.|+.
T Consensus 162 ADrvL~~~f~d~L~~i~e~-------lP~~RQtLlfSATitd--~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~ 232 (442)
T KOG0340|consen 162 ADRVLAGCFPDILEGIEEC-------LPKPRQTLLFSATITD--TIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYIL 232 (442)
T ss_pred hhhhhccchhhHHhhhhcc-------CCCccceEEEEeehhh--HHHHhhcCCcccccceEEeccCCCCchhhhhhheee
Confidence 999987 566666655443 4566799999999973 4555555554443333333322 3346666665
Q ss_pred eccCchhHHHHHhhHHHHHHHHHHh--CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhccc
Q 000129 707 IQVKKPLQRFQLMNDLCYEKVVAVA--GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMV 784 (2114)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~ 784 (2114)
+...-. +-.+|..+.... ..+.++||+++..+|+.++..|+.....
T Consensus 233 ~~~~vk-------daYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r------------------------- 280 (442)
T KOG0340|consen 233 VSIDVK-------DAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVR------------------------- 280 (442)
T ss_pred cchhhh-------HHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhcee-------------------------
Confidence 443321 111222232222 3679999999999999999988765432
Q ss_pred CcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHH
Q 000129 785 KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDI 864 (2114)
Q Consensus 785 ~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~ 864 (2114)
++.+|+.|++.+|...+.+|+++.++|||||++++||+|+|.|.+|||++.|-| +.+|
T Consensus 281 ------------~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~----------P~~y 338 (442)
T KOG0340|consen 281 ------------VVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRD----------PKDY 338 (442)
T ss_pred ------------eeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCC----------HHHH
Confidence 455699999999999999999999999999999999999999999999555554 4579
Q ss_pred HHhhcccCCCCCCCceEEEEEcCCCcHHHHH
Q 000129 865 MQMLGRAGRPQYDSYGEGIIITGHSELRYYL 895 (2114)
Q Consensus 865 ~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~ 895 (2114)
+||+||+.|+| ..|.++-+.++.+.+.+.
T Consensus 339 iHRvGRtARAG--R~G~aiSivt~rDv~l~~ 367 (442)
T KOG0340|consen 339 IHRVGRTARAG--RKGMAISIVTQRDVELLQ 367 (442)
T ss_pred HHhhcchhccc--CCcceEEEechhhHHHHH
Confidence 99999999998 789999999887766554
No 62
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5e-39 Score=362.68 Aligned_cols=361 Identities=18% Similarity=0.274 Sum_probs=273.2
Q ss_pred CCCCccCCCCCCcccccChhHHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCc
Q 000129 1311 PPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGV 1390 (2114)
Q Consensus 1311 ~~~t~lldl~p~~~~~L~~~~~~~l~~gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~ 1390 (2114)
..++..|.+.||.+..|+. -|++.+||+|..|++.+++|.+ +|-||.||||||.+|.+|+++.|..+. .|
T Consensus 6 ~~~F~~LGl~~Wlve~l~~-------l~i~~pTpiQ~~cIpkILeGrd-cig~AkTGsGKT~AFaLPil~rLsedP-~g- 75 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKA-------LGIKKPTPIQQACIPKILEGRD-CIGCAKTGSGKTAAFALPILNRLSEDP-YG- 75 (442)
T ss_pred cCchhhcCccHHHHHHHHH-------hcCCCCCchHhhhhHHHhcccc-cccccccCCCcchhhhHHHHHhhccCC-Cc-
Confidence 3455566666666555543 2699999999999999999777 999999999999999999999999853 33
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccc---hhhccCCcEEEEChhhHHHHHhhhcc--cccccce
Q 000129 1391 MRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD---LKLLEKGQIIISTPEKWDALSRRWKQ--RKYVQQV 1465 (2114)
Q Consensus 1391 ~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~~~--~~~l~~v 1465 (2114)
.-++++.|||+||.|+.+.|. .+++.+++++..+.|+.+.- .....+.|++|+|||++..+++.... ...++++
T Consensus 76 iFalvlTPTrELA~QiaEQF~-alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rl 154 (442)
T KOG0340|consen 76 IFALVLTPTRELALQIAEQFI-ALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRL 154 (442)
T ss_pred ceEEEecchHHHHHHHHHHHH-HhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhce
Confidence 389999999999999999999 78988999999999987753 44556779999999999888876322 2258899
Q ss_pred eEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhcCCCCc--eeecCCCCCccCcEEE
Q 000129 1466 SLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHG--LFNFPPGVRPVPLEIH 1543 (2114)
Q Consensus 1466 ~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~~~~--~~~f~~~~rpv~l~~~ 1543 (2114)
.++|+|||+.+.+.. +-..+.-+...++.+.|.++||||+.+. +.+.+++.... .|.+ .....++..-.
T Consensus 155 kflVlDEADrvL~~~------f~d~L~~i~e~lP~~RQtLlfSATitd~--i~ql~~~~i~k~~a~~~-e~~~~vstvet 225 (442)
T KOG0340|consen 155 KFLVLDEADRVLAGC------FPDILEGIEECLPKPRQTLLFSATITDT--IKQLFGCPITKSIAFEL-EVIDGVSTVET 225 (442)
T ss_pred eeEEecchhhhhccc------hhhHHhhhhccCCCccceEEEEeehhhH--HHHhhcCCcccccceEE-eccCCCCchhh
Confidence 999999999887653 3444555556667788999999999754 45555554322 1111 11111111000
Q ss_pred EecccccchHHHHHhc---CHHH--HHHHHHHh-cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccch
Q 000129 1544 IQGVDITNFEARMQAM---TKPT--FTAIVQHA-KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVE 1617 (2114)
Q Consensus 1544 ~~~~~~~~~~~~~~~~---~~~~--~~~i~~~l-~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~ 1617 (2114)
........ .+.+ +..+...- .+.+.++||+++.+.|+.++..|
T Consensus 226 --------L~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l----------------------- 274 (442)
T KOG0340|consen 226 --------LYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTL----------------------- 274 (442)
T ss_pred --------hhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHH-----------------------
Confidence 00000001 1112 22232221 14778999999999999888655
Q ss_pred hhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCC
Q 000129 1618 PFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTD 1697 (2114)
Q Consensus 1618 ~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~ 1697 (2114)
+.+...++.+|+.|++.+|...+.+|+++.++|||||++++||+|+|.+.+|| |++.|
T Consensus 275 ------------~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVv----------N~diP 332 (442)
T KOG0340|consen 275 ------------KNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVV----------NHDIP 332 (442)
T ss_pred ------------hhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEE----------ecCCC
Confidence 22456789999999999999999999999999999999999999999999999 99999
Q ss_pred CCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHHHHH-HhccCCCCc
Q 000129 1698 YPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFL-RLTQNPNYY 1746 (2114)
Q Consensus 1698 ~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~~~l-Rl~~nP~~y 1746 (2114)
..+.+|+||+||+.|+ ++.|.++.++...+.+.+..+. ++.+.-.-|
T Consensus 333 r~P~~yiHRvGRtARA--GR~G~aiSivt~rDv~l~~aiE~~igkKl~e~ 380 (442)
T KOG0340|consen 333 RDPKDYIHRVGRTARA--GRKGMAISIVTQRDVELLQAIEEEIGKKLTEY 380 (442)
T ss_pred CCHHHHHHhhcchhcc--cCCcceEEEechhhHHHHHHHHHHHhcccccc
Confidence 9999999999999999 6899999999988888777666 333333333
No 63
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.9e-38 Score=408.61 Aligned_cols=349 Identities=20% Similarity=0.274 Sum_probs=256.8
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCC-----CceEEEEEcccH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASET-----GVMRAVYIAPLE 1400 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~-----~~~k~l~I~Ptr 1400 (2114)
|.......+.. ||..|+++|.++++.+++++ |++++||||||||++|++|+++.+...... +.+++|||+||+
T Consensus 94 l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~-dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~Ptr 172 (475)
T PRK01297 94 LAPELMHAIHDLGFPYCTPIQAQVLGYTLAGH-DAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTR 172 (475)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-CEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcH
Confidence 44455555555 79999999999999999865 599999999999999999999988763211 135899999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEcCCcccc--hhhc--cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccc
Q 000129 1401 ALAKERYRDWEIKFGQGLGMRVVELTGETAMD--LKLL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 1476 (2114)
Q Consensus 1401 ~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~--~~~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l 1476 (2114)
+||.|+++.++ .+.+..++++..++|+.+.+ .+.+ ..++|+|+||+++..+..+| ...++++++|||||+|.+
T Consensus 173 eLa~Q~~~~~~-~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~--~~~l~~l~~lViDEah~l 249 (475)
T PRK01297 173 ELVVQIAKDAA-ALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRG--EVHLDMVEVMVLDEADRM 249 (475)
T ss_pred HHHHHHHHHHH-HhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcC--CcccccCceEEechHHHH
Confidence 99999999998 56666789999999986544 2222 34699999999998887765 346899999999999998
Q ss_pred cCCCCchHHHHHHHHHHHHhhcC--CCceEEEEcccCCC-hhHHHHHhcCCCCceeecCCCC-CccCcEEEEecccccch
Q 000129 1477 GGQGGPVLEVIVSRMRYIASQVE--NKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGV-RPVPLEIHIQGVDITNF 1552 (2114)
Q Consensus 1477 ~~~~g~~le~i~srl~~i~~~~~--~~~riV~lSATl~n-~~dla~wl~~~~~~~~~f~~~~-rpv~l~~~~~~~~~~~~ 1552 (2114)
.+.. +..+++.+..+.+ ...|++++|||+++ ...++.++...+. .+.+.+.. ....+..++.......
T Consensus 250 ~~~~------~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~- 321 (475)
T PRK01297 250 LDMG------FIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPA-IVEIEPENVASDTVEQHVYAVAGSD- 321 (475)
T ss_pred Hhcc------cHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCE-EEEeccCcCCCCcccEEEEEecchh-
Confidence 7654 4455555555543 35699999999865 3445544433321 22222111 1111222222111111
Q ss_pred HHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHh
Q 000129 1553 EARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL 1632 (2114)
Q Consensus 1553 ~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l 1632 (2114)
. ......+... ....++||||++++.|+.++..|.. .
T Consensus 322 --k-----~~~l~~ll~~-~~~~~~IVF~~s~~~~~~l~~~L~~-----------------------------------~ 358 (475)
T PRK01297 322 --K-----YKLLYNLVTQ-NPWERVMVFANRKDEVRRIEERLVK-----------------------------------D 358 (475)
T ss_pred --H-----HHHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHH-----------------------------------c
Confidence 0 0111122222 3456899999999999888866522 2
Q ss_pred ccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCC
Q 000129 1633 RHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASR 1712 (2114)
Q Consensus 1633 ~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR 1712 (2114)
+..+..+||+|+.++|..+++.|++|+++|||||+++++|||+|++.+|| +++.|.++.+|+||+|||||
T Consensus 359 ~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI----------~~~~P~s~~~y~Qr~GRaGR 428 (475)
T PRK01297 359 GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVI----------NFTLPEDPDDYVHRIGRTGR 428 (475)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEE----------EeCCCCCHHHHHHhhCccCC
Confidence 34578899999999999999999999999999999999999999999999 88999999999999999999
Q ss_pred CCCCCceEEEEEeecCcHHHHHHHHHhccC
Q 000129 1713 PLLDNSGKCVILCHAPRKEYYKKFLRLTQN 1742 (2114)
Q Consensus 1713 ~~~~~~G~~iil~~~~~~~~~~~~lRl~~n 1742 (2114)
. +..|.++++..+.+..++..+.+++.-
T Consensus 429 ~--g~~g~~i~~~~~~d~~~~~~~~~~~~~ 456 (475)
T PRK01297 429 A--GASGVSISFAGEDDAFQLPEIEELLGR 456 (475)
T ss_pred C--CCCceEEEEecHHHHHHHHHHHHHhCC
Confidence 8 578999999987765555555554443
No 64
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.5e-40 Score=363.18 Aligned_cols=335 Identities=21% Similarity=0.314 Sum_probs=272.0
Q ss_pred ChhhHhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHH
Q 000129 483 PEWAQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (2114)
Q Consensus 483 p~~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ra 561 (2114)
++.+...| .||+.|+|+|.++||.++.+.+ +|+-|..|+|||.+|.+|++..+.... ...++++++|||+
T Consensus 94 r~LLmgIfe~G~ekPSPiQeesIPiaLtGrd-iLaRaKNGTGKT~a~~IP~Lekid~~~--------~~IQ~~ilVPtre 164 (459)
T KOG0326|consen 94 RELLMGIFEKGFEKPSPIQEESIPIALTGRD-ILARAKNGTGKTAAYCIPVLEKIDPKK--------NVIQAIILVPTRE 164 (459)
T ss_pred HHHHHHHHHhccCCCCCccccccceeecchh-hhhhccCCCCCccceechhhhhcCccc--------cceeEEEEeecch
Confidence 44555666 7999999999999999988765 999999999999999999999886542 4568999999999
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEeCCCccChhhh---ccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccccccc
Q 000129 562 LVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQI---EETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (2114)
Q Consensus 562 La~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~---~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l~d 637 (2114)
||-|..+.+.++.+.+|++|...+|++++.+... ...+++|+||++. |...+.- ..+++..++|+|||+.|++
T Consensus 165 lALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgV---a~ls~c~~lV~DEADKlLs 241 (459)
T KOG0326|consen 165 LALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGV---ADLSDCVILVMDEADKLLS 241 (459)
T ss_pred hhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhccc---ccchhceEEEechhhhhhc
Confidence 9999999999999999999999999999877543 5779999999997 5554443 4678899999999999998
Q ss_pred -CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCc-eEeecCCcccccceeEEEeeccCchhHH
Q 000129 638 -NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKG-LFYFDNSYRPVPLSQQYIGIQVKKPLQR 715 (2114)
Q Consensus 638 -~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~-~~~f~~~~rpv~l~~~~~~~~~~~~~~~ 715 (2114)
++++.++.++..+ ++..|++++|||.|. .+..|....+.++ ....-....+..+.+.|-.+.+.. +
T Consensus 242 ~~F~~~~e~li~~l-------P~~rQillySATFP~--tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~q---K 309 (459)
T KOG0326|consen 242 VDFQPIVEKLISFL-------PKERQILLYSATFPL--TVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQ---K 309 (459)
T ss_pred hhhhhHHHHHHHhC-------CccceeeEEecccch--hHHHHHHHhccCcceeehhhhhhhcchhhheeeechhh---h
Confidence 7999998887754 778999999999994 5777776654433 233344445555665554444332 2
Q ss_pred HHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccC
Q 000129 716 FQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPY 795 (2114)
Q Consensus 716 ~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~ 795 (2114)
.. |...+.....-+|.||||||.+.++-+|+.+.+.+.++-
T Consensus 310 vh-----CLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscy---------------------------------- 350 (459)
T KOG0326|consen 310 VH-----CLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCY---------------------------------- 350 (459)
T ss_pred hh-----hHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhh----------------------------------
Confidence 22 233334445568999999999999999999988776543
Q ss_pred ceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCC
Q 000129 796 GFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQ 875 (2114)
Q Consensus 796 gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g 875 (2114)
+.||.|.+++|+.|+..|++|.++.||||+.+.||||+++++|||| ||.++ +...|+||+||+||-|
T Consensus 351 ---yiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVIN----FDfpk------~aEtYLHRIGRsGRFG 417 (459)
T KOG0326|consen 351 ---YIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVIN----FDFPK------NAETYLHRIGRSGRFG 417 (459)
T ss_pred ---HHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEe----cCCCC------CHHHHHHHccCCccCC
Confidence 4499999999999999999999999999999999999999999999 77665 6778999999999966
Q ss_pred CCCceEEEEEcCCCcHHHHH
Q 000129 876 YDSYGEGIIITGHSELRYYL 895 (2114)
Q Consensus 876 ~d~~G~~iil~~~~e~~~~~ 895 (2114)
..|.+|-+.+.++...+.
T Consensus 418 --hlGlAInLityedrf~L~ 435 (459)
T KOG0326|consen 418 --HLGLAINLITYEDRFNLY 435 (459)
T ss_pred --CcceEEEEEehhhhhhHH
Confidence 889999988876654433
No 65
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-38 Score=374.58 Aligned_cols=369 Identities=21% Similarity=0.284 Sum_probs=270.0
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.+|..||.+|+++||.++++++ ++|-|+||||||++|++|+++.+..... ..-+.+++-+|||+|||+||.|+++.+
T Consensus 155 m~i~~pTsVQkq~IP~lL~grD-~lV~aQTGSGKTLAYllPiVq~Lq~m~~--ki~Rs~G~~ALVivPTREL~~Q~y~~~ 231 (708)
T KOG0348|consen 155 MKISAPTSVQKQAIPVLLEGRD-ALVRAQTGSGKTLAYLLPIVQSLQAMEP--KIQRSDGPYALVIVPTRELALQIYETV 231 (708)
T ss_pred hccCccchHhhcchhhhhcCcc-eEEEcCCCCcccHHHHHHHHHHHHhcCc--cccccCCceEEEEechHHHHHHHHHHH
Confidence 5899999999999999999766 9999999999999999999999876532 122456789999999999999999999
Q ss_pred HHhhccCCc-EEEEEeCCCccCh---hhhccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccccccc-CCchhHH
Q 000129 571 SNRLQMYDV-KVRELSGDQTLTR---QQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLE 644 (2114)
Q Consensus 571 ~~~~~~~gi-~v~~l~Gd~~~~~---~~~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le 644 (2114)
++++.++.. .-+.+.|+..... +...+.+|+|+||+++ |.|..... ..++++++||+||+|.|.+ +++..+.
T Consensus 232 qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~--i~~s~LRwlVlDEaDrlleLGfekdit 309 (708)
T KOG0348|consen 232 QKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKS--IKFSRLRWLVLDEADRLLELGFEKDIT 309 (708)
T ss_pred HHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccch--heeeeeeEEEecchhHHHhccchhhHH
Confidence 999987653 3356666654332 2357899999999997 77765443 5677899999999999999 7888898
Q ss_pred HHHHHHHHHHhh------ccccccEEEEccccCChHHHHHHHhccccCceEee---------------------------
Q 000129 645 SIVARTVRQIET------TKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYF--------------------------- 691 (2114)
Q Consensus 645 ~iv~rl~~~~~~------~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f--------------------------- 691 (2114)
.|+..+-.+-.. .++..+-+++||||. +.|.+.-...+.++++.-
T Consensus 310 ~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLt--d~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l 387 (708)
T KOG0348|consen 310 QILKAVHSIQNAECKDPKLPHQLQNMLLSATLT--DGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKL 387 (708)
T ss_pred HHHHHHhhccchhcccccccHHHHhHhhhhhhH--HHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCccccccc
Confidence 888766331111 122467899999997 345554444433333322
Q ss_pred cCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCc
Q 000129 692 DNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDS 771 (2114)
Q Consensus 692 ~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~ 771 (2114)
+..--|-.|.++|..++.+ -++..+..++.+.+. .....++|||+++.+.++.-+..|.........-
T Consensus 388 ~~~~iPeqL~qry~vVPpK---LRLV~Laa~L~~~~k-~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~-------- 455 (708)
T KOG0348|consen 388 DSFAIPEQLLQRYTVVPPK---LRLVALAALLLNKVK-FEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEG-------- 455 (708)
T ss_pred ccccCcHHhhhceEecCCc---hhHHHHHHHHHHHhh-hhhhceeEEEEechhHHHHHHHHHHhhhhccccc--------
Confidence 1112244455555555443 234444444444332 2234589999999999999888887654321000
Q ss_pred hhHHHHHhhhcccCcchhhh-hccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceecc
Q 000129 772 VSREILQSHTDMVKSNDLKD-LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYN 850 (2114)
Q Consensus 772 ~~~~~l~~~~~~~~~~~L~~-ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd 850 (2114)
......+..+.. .+...+.-+||+|++++|..+++.|+...-.||.||++++||+|+|.|++||. ||
T Consensus 456 --------~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQ----Yd 523 (708)
T KOG0348|consen 456 --------SSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQ----YD 523 (708)
T ss_pred --------ccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEE----eC
Confidence 000111111222 22344778899999999999999999998899999999999999999999999 88
Q ss_pred CCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcHHHHHHhhc
Q 000129 851 PEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMN 899 (2114)
Q Consensus 851 ~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~~ll~ 899 (2114)
++. +..+|+||+||+.|.| ..|.+++|..+.|.+ |.+++.
T Consensus 524 ~P~------s~adylHRvGRTARaG--~kG~alLfL~P~Eae-y~~~l~ 563 (708)
T KOG0348|consen 524 PPF------STADYLHRVGRTARAG--EKGEALLFLLPSEAE-YVNYLK 563 (708)
T ss_pred CCC------CHHHHHHHhhhhhhcc--CCCceEEEecccHHH-HHHHHH
Confidence 876 8999999999999998 779999999998888 444443
No 66
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=5.2e-39 Score=378.30 Aligned_cols=345 Identities=20% Similarity=0.283 Sum_probs=277.8
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.+|..++.||+++|+.++.|.+ +|..|-||||||++|++|+++.+...... ..++.-+|+|+|||+||.|+++.+
T Consensus 87 ~~fv~~teiQ~~~Ip~aL~G~D-vlGAAkTGSGKTLAFlvPvlE~L~r~kWs----~~DGlGalIISPTRELA~QtFevL 161 (758)
T KOG0343|consen 87 AKFVKMTEIQRDTIPMALQGHD-VLGAAKTGSGKTLAFLVPVLEALYRLKWS----PTDGLGALIISPTRELALQTFEVL 161 (758)
T ss_pred cCCccHHHHHHhhcchhccCcc-cccccccCCCceeeehHHHHHHHHHcCCC----CCCCceeEEecchHHHHHHHHHHH
Confidence 5799999999999999999977 99999999999999999999999876543 235678999999999999999999
Q ss_pred HHhhccCCcEEEEEeCCCccCh--hhhccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccccccc-CCchhHHHH
Q 000129 571 SNRLQMYDVKVRELSGDQTLTR--QQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESI 646 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~--~~~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~i 646 (2114)
.+..+..+++.+.+.|+..... ..+.+.+|+||||+++ .++-.... ....++.++|+|||+++.| ++..+++.|
T Consensus 162 ~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~--f~t~~lQmLvLDEADR~LDMGFk~tL~~I 239 (758)
T KOG0343|consen 162 NKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPN--FSTSNLQMLVLDEADRMLDMGFKKTLNAI 239 (758)
T ss_pred HHHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCC--CCCCcceEEEeccHHHHHHHhHHHHHHHH
Confidence 9999999999999999987654 3467899999999996 44443332 4557789999999999999 688899988
Q ss_pred HHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecC----CcccccceeEEEeeccCchhHHHHHhhHH
Q 000129 647 VARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDN----SYRPVPLSQQYIGIQVKKPLQRFQLMNDL 722 (2114)
Q Consensus 647 v~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~----~~rpv~l~~~~~~~~~~~~~~~~~~~~~~ 722 (2114)
+..+ +...|.+++|||-. ..++...+.....+.++-.. .-.|..|.|.|+.+...... ..
T Consensus 240 i~~l-------P~~RQTLLFSATqt--~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki-------~~ 303 (758)
T KOG0343|consen 240 IENL-------PKKRQTLLFSATQT--KSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKI-------DM 303 (758)
T ss_pred HHhC-------Chhheeeeeecccc--hhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHH-------HH
Confidence 8764 67889999999955 45666666555555443222 34688899988877655432 23
Q ss_pred HHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecC
Q 000129 723 CYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHA 802 (2114)
Q Consensus 723 ~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHa 802 (2114)
+|..+..+. ..++|||++|.+++..++..++...... .+..+||
T Consensus 304 L~sFI~shl-k~K~iVF~SscKqvkf~~e~F~rlrpg~-----------------------------------~l~~L~G 347 (758)
T KOG0343|consen 304 LWSFIKSHL-KKKSIVFLSSCKQVKFLYEAFCRLRPGI-----------------------------------PLLALHG 347 (758)
T ss_pred HHHHHHhcc-ccceEEEEehhhHHHHHHHHHHhcCCCC-----------------------------------ceeeecc
Confidence 455454444 6689999999999999999888753221 2345699
Q ss_pred CCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEE
Q 000129 803 GMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEG 882 (2114)
Q Consensus 803 gl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~ 882 (2114)
+|++..|..|...|-...--||+||++++||+|+|+|++||..++|- .+.+|+||+||+.| ++..|++
T Consensus 348 ~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPe----------dv~tYIHRvGRtAR--~~~~G~s 415 (758)
T KOG0343|consen 348 TMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPE----------DVDTYIHRVGRTAR--YKERGES 415 (758)
T ss_pred chhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCch----------hHHHHHHHhhhhhc--ccCCCce
Confidence 99999999999999998899999999999999999999999955444 46679999999999 4588999
Q ss_pred EEEcCCCcHHHHHHhhcCC-Ccccc
Q 000129 883 IIITGHSELRYYLSLMNQQ-LPIES 906 (2114)
Q Consensus 883 iil~~~~e~~~~~~ll~~~-~pies 906 (2114)
+++..+++.+.+...++.. +|++.
T Consensus 416 ll~L~psEeE~~l~~Lq~k~I~i~~ 440 (758)
T KOG0343|consen 416 LLMLTPSEEEAMLKKLQKKKIPIKE 440 (758)
T ss_pred EEEEcchhHHHHHHHHHHcCCCHHh
Confidence 9999999977776655544 66543
No 67
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.8e-38 Score=367.10 Aligned_cols=355 Identities=19% Similarity=0.261 Sum_probs=267.1
Q ss_pred hHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc---CCCceEEEEEcccHHHHHH
Q 000129 1330 PLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS---ETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1330 ~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~---~~~~~k~l~I~Ptr~La~q 1405 (2114)
...+.+-. ||..+||+|..++|.++.+.| |++-||||||||++|++|+++.+.... +.+.+-+|+|+|||+||.|
T Consensus 16 ~l~~~l~~~GF~~mTpVQa~tIPlll~~KD-VvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~Q 94 (567)
T KOG0345|consen 16 WLLEALDESGFEKMTPVQAATIPLLLKNKD-VVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQ 94 (567)
T ss_pred HHHHHHHhcCCcccCHHHHhhhHHHhcCCc-eEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHH
Confidence 34444433 799999999999999998666 999999999999999999999995432 2223578999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcccc--hhhc--cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCC
Q 000129 1406 RYRDWEIKFGQGLGMRVVELTGETAMD--LKLL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2114)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~l~G~~~~~--~~~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g 1481 (2114)
+.+...........+++..++|+.+.+ .+.+ +.++|+|||||++..++++-.....++++.++|+||||++.+.+
T Consensus 95 I~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmg- 173 (567)
T KOG0345|consen 95 IREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMG- 173 (567)
T ss_pred HHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhccc-
Confidence 999988544454688899999986654 2322 35589999999999999885555567799999999999999887
Q ss_pred chHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHHHhcCCCCceeecCCCC--CccCcEEEEecccccchHHHHHh
Q 000129 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGV--RPVPLEIHIQGVDITNFEARMQA 1558 (2114)
Q Consensus 1482 ~~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~wl~~~~~~~~~f~~~~--rpv~l~~~~~~~~~~~~~~~~~~ 1558 (2114)
+...++.|.+.+++..|.=++|||.... .+++..--.++..+-.-..+. -|..+...+....... .
T Consensus 174 -----Fe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~e--K---- 242 (567)
T KOG0345|consen 174 -----FEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADE--K---- 242 (567)
T ss_pred -----HHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHH--H----
Confidence 8889999999999999999999998653 244332211111111101111 1222222211111000 0
Q ss_pred cCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEe
Q 000129 1559 MTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGY 1638 (2114)
Q Consensus 1559 ~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~ 1638 (2114)
....+. ++.. ...+++|||.+|...++..+..+... .....+..
T Consensus 243 -~~~lv~-~L~~-~~~kK~iVFF~TCasVeYf~~~~~~~---------------------------------l~~~~i~~ 286 (567)
T KOG0345|consen 243 -LSQLVH-LLNN-NKDKKCIVFFPTCASVEYFGKLFSRL---------------------------------LKKREIFS 286 (567)
T ss_pred -HHHHHH-HHhc-cccccEEEEecCcchHHHHHHHHHHH---------------------------------hCCCcEEE
Confidence 001111 1222 35688999999998887766544221 12345889
Q ss_pred ecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCc
Q 000129 1639 LHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNS 1718 (2114)
Q Consensus 1639 ~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~ 1718 (2114)
+||.|++..|..+++.|.+..-.||+||++++||+|+|++.+|| +++.|.....|+||+||+||. +..
T Consensus 287 iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~Vv----------Q~DpP~~~~~FvHR~GRTaR~--gr~ 354 (567)
T KOG0345|consen 287 IHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVV----------QFDPPKDPSSFVHRCGRTARA--GRE 354 (567)
T ss_pred ecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEE----------ecCCCCChhHHHhhcchhhhc--cCc
Confidence 99999999999999999998889999999999999999999999 899999999999999999998 789
Q ss_pred eEEEEEeecCcHHHHHHHHHhccCCCCc
Q 000129 1719 GKCVILCHAPRKEYYKKFLRLTQNPNYY 1746 (2114)
Q Consensus 1719 G~~iil~~~~~~~~~~~~lRl~~nP~~y 1746 (2114)
|.|++|..+ +.+.|-.|+|+..-|..-
T Consensus 355 G~Aivfl~p-~E~aYveFl~i~~~v~le 381 (567)
T KOG0345|consen 355 GNAIVFLNP-REEAYVEFLRIKGKVELE 381 (567)
T ss_pred cceEEEecc-cHHHHHHHHHhcCccchh
Confidence 999999998 667788899888767544
No 68
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=2.1e-38 Score=433.46 Aligned_cols=350 Identities=22% Similarity=0.340 Sum_probs=252.8
Q ss_pred EEecCCCchHHHHHHHHHHHhhhcc--------CCCceEEEEEcccHHHHHHHHHHHHHH----------hcC-CCCcEE
Q 000129 1362 VAAPTGSGKTICSEFAILRNHQKAS--------ETGVMRAVYIAPLEALAKERYRDWEIK----------FGQ-GLGMRV 1422 (2114)
Q Consensus 1362 i~ApTGSGKTl~~~l~il~~l~~~~--------~~~~~k~l~I~Ptr~La~q~~~~~~~~----------f~~-~~g~~v 1422 (2114)
|+||||||||+||.+|++..+.... ...++++|||+|+|+|+.|+++.++.. ++. ..+++|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5899999999999999998887531 112459999999999999999988742 222 247899
Q ss_pred EEEcCCcccchh--hc-cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC-CCCchHHHHHHHHHHHHhhc
Q 000129 1423 VELTGETAMDLK--LL-EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQV 1498 (2114)
Q Consensus 1423 ~~l~G~~~~~~~--~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~-~~g~~le~i~srl~~i~~~~ 1498 (2114)
...+||++.+.+ .+ +.++|+|+|||+|..++.+ +.+..++++++|||||+|.+.+ .+|..++..++|+..+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLts-k~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~--- 156 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTS-RARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALL--- 156 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhh-hhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhC---
Confidence 999999987753 33 3569999999999988764 2355799999999999998886 48999999999999874
Q ss_pred CCCceEEEEcccCCChhHHHHHhcCCC-CceeecCCCCCccCcEEEEecccccchH------------HHHHhcCHHHHH
Q 000129 1499 ENKIRIVALSTSLANAKDLGEWIGATS-HGLFNFPPGVRPVPLEIHIQGVDITNFE------------ARMQAMTKPTFT 1565 (2114)
Q Consensus 1499 ~~~~riV~lSATl~n~~dla~wl~~~~-~~~~~f~~~~rpv~l~~~~~~~~~~~~~------------~~~~~~~~~~~~ 1565 (2114)
+.+.|+|++|||++|.+++++|++... ..+++ .+..++.++.+.+...+..... .+...+....+.
T Consensus 157 ~~~~QrIgLSATI~n~eevA~~L~g~~pv~Iv~-~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~ 235 (1490)
T PRK09751 157 HTSAQRIGLSATVRSASDVAAFLGGDRPVTVVN-PPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIET 235 (1490)
T ss_pred CCCCeEEEEEeeCCCHHHHHHHhcCCCCEEEEC-CCCCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHH
Confidence 567899999999999999999998753 33443 5666777776554332211110 001111222233
Q ss_pred HHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHh---ccceEeecCC
Q 000129 1566 AIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL---RHGVGYLHEG 1642 (2114)
Q Consensus 1566 ~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l---~~gV~~~H~~ 1642 (2114)
.+...+..++++|||||||+.|+.++..|.......... . ..............+....... ...+.+|||+
T Consensus 236 ~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGs 310 (1490)
T PRK09751 236 GILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQR-S----PSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGS 310 (1490)
T ss_pred HHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccc-c----ccccchhhhhhhccccchhccccccceeeeecccc
Confidence 444444567899999999999999999996643211000 0 0000000000000111111111 1236899999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEE
Q 000129 1643 LNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCV 1722 (2114)
Q Consensus 1643 ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~i 1722 (2114)
|++++|..+++.|++|++++||||+++++|||++++.+|| +++.|.++.+|+||+|||||. .+..++++
T Consensus 311 LSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVI----------q~gsP~sVas~LQRiGRAGR~-~gg~s~gl 379 (1490)
T PRK09751 311 VSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVI----------QVATPLSVASGLQRIGRAGHQ-VGGVSKGL 379 (1490)
T ss_pred CCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEE----------EeCCCCCHHHHHHHhCCCCCC-CCCccEEE
Confidence 9999999999999999999999999999999999999999 888999999999999999997 46677777
Q ss_pred EEeecCcHHHH
Q 000129 1723 ILCHAPRKEYY 1733 (2114)
Q Consensus 1723 il~~~~~~~~~ 1733 (2114)
++.. +..++.
T Consensus 380 i~p~-~r~dll 389 (1490)
T PRK09751 380 FFPR-TRRDLV 389 (1490)
T ss_pred EEeC-cHHHHH
Confidence 5554 344433
No 69
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=2.1e-38 Score=372.77 Aligned_cols=348 Identities=18% Similarity=0.197 Sum_probs=270.8
Q ss_pred hHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc--CCCceEEEEEcccHHHHHHH
Q 000129 1330 PLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS--ETGVMRAVYIAPLEALAKER 1406 (2114)
Q Consensus 1330 ~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~--~~~~~k~l~I~Ptr~La~q~ 1406 (2114)
..+.++.. ||.++|++|...++.++.+.+ +++.|.||||||++|++|+++.+.... +..+..+++|+|||+||.|+
T Consensus 92 ~t~kAi~~~GF~~MT~VQ~~ti~pll~gkD-vl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~ 170 (543)
T KOG0342|consen 92 LTLKAIKEMGFETMTPVQQKTIPPLLEGKD-VLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQI 170 (543)
T ss_pred HHHHHHHhcCccchhHHHHhhcCccCCCcc-ceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHH
Confidence 34455554 899999999999999999775 999999999999999999999988753 23346899999999999999
Q ss_pred HHHHHHHhcCCCCcEEEEEcCCcccc---hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCch
Q 000129 1407 YRDWEIKFGQGLGMRVVELTGETAMD---LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483 (2114)
Q Consensus 1407 ~~~~~~~f~~~~g~~v~~l~G~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~ 1483 (2114)
+.+.++.+....+..|+.+.|+.... .+....++|+|+||++|..++.+... ..+++++++|+||||++.+.+
T Consensus 171 ~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~-f~~r~~k~lvlDEADrlLd~G--- 246 (543)
T KOG0342|consen 171 FAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSG-FLFRNLKCLVLDEADRLLDIG--- 246 (543)
T ss_pred HHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCc-chhhccceeEeecchhhhhcc---
Confidence 99999666544488999999988764 23334569999999999998887443 456778999999999999877
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEEcccCCC-hhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHH
Q 000129 1484 LEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKP 1562 (2114)
Q Consensus 1484 le~i~srl~~i~~~~~~~~riV~lSATl~n-~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~ 1562 (2114)
+-..|..|...++...|..++|||.+. .++++.-.-......++......+...+-.-+++-......++ -.
T Consensus 247 ---F~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f----~l 319 (543)
T KOG0342|consen 247 ---FEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRF----SL 319 (543)
T ss_pred ---cHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchH----HH
Confidence 667777777788899999999999976 4566664443334444444444443333222322222211211 12
Q ss_pred HHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCC
Q 000129 1563 TFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEG 1642 (2114)
Q Consensus 1563 ~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ 1642 (2114)
++..+.++ ....++||||+|...+...+..|. .+...|.-+||+
T Consensus 320 l~~~LKk~-~~~~KiiVF~sT~~~vk~~~~lL~-----------------------------------~~dlpv~eiHgk 363 (543)
T KOG0342|consen 320 LYTFLKKN-IKRYKIIVFFSTCMSVKFHAELLN-----------------------------------YIDLPVLEIHGK 363 (543)
T ss_pred HHHHHHHh-cCCceEEEEechhhHHHHHHHHHh-----------------------------------hcCCchhhhhcC
Confidence 34444444 334889999999999888775542 244568889999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEE
Q 000129 1643 LNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCV 1722 (2114)
Q Consensus 1643 ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~i 1722 (2114)
+++..|..+...|++.+.-|||||+++|||+|+|++.+|| +++.|-...+|+||+||+||. +..|+++
T Consensus 364 ~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~Vv----------Q~~~P~d~~~YIHRvGRTaR~--gk~G~al 431 (543)
T KOG0342|consen 364 QKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVV----------QYDPPSDPEQYIHRVGRTARE--GKEGKAL 431 (543)
T ss_pred CcccccchHHHHHhhcccceEEecchhhccCCCCCceEEE----------EeCCCCCHHHHHHHhcccccc--CCCceEE
Confidence 9999999999999999999999999999999999999999 899999999999999999996 7999999
Q ss_pred EEeecCcHHHHHHHH
Q 000129 1723 ILCHAPRKEYYKKFL 1737 (2114)
Q Consensus 1723 il~~~~~~~~~~~~l 1737 (2114)
++..+.+..|+..+-
T Consensus 432 L~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 432 LLLAPWELGFLRYLK 446 (543)
T ss_pred EEeChhHHHHHHHHh
Confidence 999887766655444
No 70
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.7e-39 Score=348.83 Aligned_cols=335 Identities=20% Similarity=0.320 Sum_probs=260.3
Q ss_pred hhHhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHH
Q 000129 485 WAQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV 563 (2114)
Q Consensus 485 ~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa 563 (2114)
.++..+ -||++|+.||+.|++.++.+++ ++++|..|+|||..|.+.+++.+.-.. ...++++++|||+||
T Consensus 38 lLrgiY~yGfekPS~IQqrAi~~IlkGrd-ViaQaqSGTGKTa~~si~vlq~~d~~~--------r~tQ~lilsPTRELa 108 (400)
T KOG0328|consen 38 LLRGIYAYGFEKPSAIQQRAIPQILKGRD-VIAQAQSGTGKTATFSISVLQSLDISV--------RETQALILSPTRELA 108 (400)
T ss_pred HHHHHHHhccCCchHHHhhhhhhhhcccc-eEEEecCCCCceEEEEeeeeeeccccc--------ceeeEEEecChHHHH
Confidence 345555 6999999999999999998866 999999999999999998888775432 346899999999999
Q ss_pred HHHHHHHHHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccccccc-C
Q 000129 564 AEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-N 638 (2114)
Q Consensus 564 ~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~ 638 (2114)
.|+.+.+..+..++|+.+..+.|+.+..... -.+.+++.+||++. |++.|.. ...+.++++|+||++.|++ +
T Consensus 109 ~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~---L~tr~vkmlVLDEaDemL~kg 185 (400)
T KOG0328|consen 109 VQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRS---LRTRAVKMLVLDEADEMLNKG 185 (400)
T ss_pred HHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhcc---ccccceeEEEeccHHHHHHhh
Confidence 9999999999999999999999998866543 24789999999996 8887765 4567899999999999887 5
Q ss_pred CchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceE--eecCCcccccceeEEEeeccCchhHHH
Q 000129 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLF--YFDNSYRPVPLSQQYIGIQVKKPLQRF 716 (2114)
Q Consensus 639 rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~--~f~~~~rpv~l~~~~~~~~~~~~~~~~ 716 (2114)
++..+-.+.. ..+++.|++++|||+| .++.+........++- .-.....--.+.+.|+.+. +...++
T Consensus 186 fk~Qiydiyr-------~lp~~~Qvv~~SATlp--~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve--~EewKf 254 (400)
T KOG0328|consen 186 FKEQIYDIYR-------YLPPGAQVVLVSATLP--HEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVE--KEEWKF 254 (400)
T ss_pred HHHHHHHHHH-------hCCCCceEEEEeccCc--HHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeec--hhhhhH
Confidence 6655554443 3588999999999998 4444433332223322 2222221222455555443 233444
Q ss_pred HHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCc
Q 000129 717 QLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYG 796 (2114)
Q Consensus 717 ~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~g 796 (2114)
..+.+ +|+ ...-.|++|||||++.+..+.+.+++..+ -
T Consensus 255 dtLcd-LYd----~LtItQavIFcnTk~kVdwLtekm~~~nf-------------------------------------t 292 (400)
T KOG0328|consen 255 DTLCD-LYD----TLTITQAVIFCNTKRKVDWLTEKMREANF-------------------------------------T 292 (400)
T ss_pred hHHHH-Hhh----hhehheEEEEecccchhhHHHHHHHhhCc-------------------------------------e
Confidence 44443 233 33457999999999999998888876532 2
Q ss_pred eEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCC
Q 000129 797 FAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY 876 (2114)
Q Consensus 797 v~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~ 876 (2114)
|...||.|++++|..+++.|++|+-+||++|++.|||+|+|.+.+||| ||.|. ....|+||+||+||-|
T Consensus 293 VssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviN----YDLP~------nre~YIHRIGRSGRFG- 361 (400)
T KOG0328|consen 293 VSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVIN----YDLPN------NRELYIHRIGRSGRFG- 361 (400)
T ss_pred eeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEe----cCCCc------cHHHHhhhhccccccC-
Confidence 556699999999999999999999999999999999999999999999 55554 4467999999999965
Q ss_pred CCceEEEEEcCCCcHHHHHH
Q 000129 877 DSYGEGIIITGHSELRYYLS 896 (2114)
Q Consensus 877 d~~G~~iil~~~~e~~~~~~ 896 (2114)
..|.+|-+...++...|++
T Consensus 362 -RkGvainFVk~~d~~~lrd 380 (400)
T KOG0328|consen 362 -RKGVAINFVKSDDLRILRD 380 (400)
T ss_pred -CcceEEEEecHHHHHHHHH
Confidence 8999999999988776665
No 71
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=8.8e-38 Score=367.11 Aligned_cols=377 Identities=20% Similarity=0.285 Sum_probs=280.1
Q ss_pred cccCcccccccccccCCCCCCCCCCccCCCCCCcccccChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCC
Q 000129 1290 WLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGS 1368 (2114)
Q Consensus 1290 wl~~e~~~~is~~~l~lp~~~~~~t~lldl~p~~~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGS 1368 (2114)
|-..-....|++++-.+|.. +..+.-+.++...+.-+.. ||..|+|||.+|++..++.++ +|..|.|||
T Consensus 224 wri~redynis~kg~~lpnp---------lrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD-~igvaETgs 293 (673)
T KOG0333|consen 224 WRIFREDYNISIKGGRLPNP---------LRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRD-PIGVAETGS 293 (673)
T ss_pred ceeeecceeeeecCCCCCcc---------ccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCC-eeeEEeccC
Confidence 66666666777777777752 2233334455555555544 799999999999998888555 999999999
Q ss_pred chHHHHHHHHHHHhhhcc-------CCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchh---hccC
Q 000129 1369 GKTICSEFAILRNHQKAS-------ETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEK 1438 (2114)
Q Consensus 1369 GKTl~~~l~il~~l~~~~-------~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~---~l~~ 1438 (2114)
|||.+|++|++-.+.... ...++.+++++|||+|+.|+..+-. +|++.+|++++.+.|+.+.+.+ .-..
T Consensus 294 Gktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~-kf~~~lg~r~vsvigg~s~EEq~fqls~g 372 (673)
T KOG0333|consen 294 GKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETN-KFGKPLGIRTVSVIGGLSFEEQGFQLSMG 372 (673)
T ss_pred CccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHH-HhcccccceEEEEecccchhhhhhhhhcc
Confidence 999999999998776532 1124699999999999999999988 7999999999999999988754 4456
Q ss_pred CcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCC-CchHHHHHHHHHHH------------------HhhcC
Q 000129 1439 GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYI------------------ASQVE 1499 (2114)
Q Consensus 1439 ~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~-g~~le~i~srl~~i------------------~~~~~ 1499 (2114)
++|+|+||++++..+-+ ....++++..||+|||+.+.+.+ -+.+..++..|-.- .....
T Consensus 373 ceiviatPgrLid~Len--r~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k 450 (673)
T KOG0333|consen 373 CEIVIATPGRLIDSLEN--RYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSK 450 (673)
T ss_pred ceeeecCchHHHHHHHH--HHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhccccc
Confidence 69999999999877765 34568889999999999887753 45555555444211 00000
Q ss_pred CCceEEEEcccCCCh-hHHHH-HhcCCCCceeecCCCCCccCcE-EEEecccccchHHHHHhcCHHHHHHHHHHhcCCCC
Q 000129 1500 NKIRIVALSTSLANA-KDLGE-WIGATSHGLFNFPPGVRPVPLE-IHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKP 1576 (2114)
Q Consensus 1500 ~~~riV~lSATl~n~-~dla~-wl~~~~~~~~~f~~~~rpv~l~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 1576 (2114)
.-.|.+.||||++.+ ..++. ||..+. +.......+|.|.- ..+.-..... . ...+..++.. ....|
T Consensus 451 ~yrqT~mftatm~p~verlar~ylr~pv--~vtig~~gk~~~rveQ~v~m~~ed~--k------~kkL~eil~~-~~~pp 519 (673)
T KOG0333|consen 451 KYRQTVMFTATMPPAVERLARSYLRRPV--VVTIGSAGKPTPRVEQKVEMVSEDE--K------RKKLIEILES-NFDPP 519 (673)
T ss_pred ceeEEEEEecCCChHHHHHHHHHhhCCe--EEEeccCCCCccchheEEEEecchH--H------HHHHHHHHHh-CCCCC
Confidence 116889999999874 34554 444332 22223333444432 1221111110 0 1112233333 24678
Q ss_pred EEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHh
Q 000129 1577 ALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFE 1656 (2114)
Q Consensus 1577 ~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~ 1656 (2114)
+|||+|+++.|..+|..|- ..++.+..+|||-++++|..+++.|+
T Consensus 520 iIIFvN~kk~~d~lAk~Le-----------------------------------K~g~~~~tlHg~k~qeQRe~aL~~fr 564 (673)
T KOG0333|consen 520 IIIFVNTKKGADALAKILE-----------------------------------KAGYKVTTLHGGKSQEQRENALADFR 564 (673)
T ss_pred EEEEEechhhHHHHHHHHh-----------------------------------hccceEEEeeCCccHHHHHHHHHHHH
Confidence 9999999999999997762 24567999999999999999999999
Q ss_pred cCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHHHH
Q 000129 1657 AGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKF 1736 (2114)
Q Consensus 1657 ~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~~~ 1736 (2114)
+|..+|||||++++||||+|+|.+|| +|+++.++.+|+||+||+||+ +..|.|+.|++..+.+.|..+
T Consensus 565 ~~t~dIlVaTDvAgRGIDIpnVSlVi----------nydmaksieDYtHRIGRTgRA--Gk~GtaiSflt~~dt~v~ydL 632 (673)
T KOG0333|consen 565 EGTGDILVATDVAGRGIDIPNVSLVI----------NYDMAKSIEDYTHRIGRTGRA--GKSGTAISFLTPADTAVFYDL 632 (673)
T ss_pred hcCCCEEEEecccccCCCCCccceee----------ecchhhhHHHHHHHhcccccc--ccCceeEEEeccchhHHHHHH
Confidence 99999999999999999999999999 999999999999999999999 789999999999887765555
Q ss_pred H
Q 000129 1737 L 1737 (2114)
Q Consensus 1737 l 1737 (2114)
.
T Consensus 633 k 633 (673)
T KOG0333|consen 633 K 633 (673)
T ss_pred H
Confidence 4
No 72
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=3.9e-38 Score=390.03 Aligned_cols=363 Identities=28% Similarity=0.477 Sum_probs=288.2
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.+-++|++||.++.. +++|+|+|+|.+|||++|+.||.-.-.. .. |++|.+|.++|.+|.+++|+..|+.
T Consensus 297 elD~FQk~Ai~~ler-g~SVFVAAHTSAGKTvVAEYAialaq~h---~T--R~iYTSPIKALSNQKfRDFk~tF~D---- 366 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHLER-GDSVFVAAHTSAGKTVVAEYAIALAQKH---MT--RTIYTSPIKALSNQKFRDFKETFGD---- 366 (1248)
T ss_pred CccHHHHHHHHHHHc-CCeEEEEecCCCCcchHHHHHHHHHHhh---cc--ceEecchhhhhccchHHHHHHhccc----
Confidence 688999999999876 5569999999999999999998754433 34 9999999999999999999999985
Q ss_pred EEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC-CCCchHHHHHHHHHHHHhhcC
Q 000129 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQVE 1499 (2114)
Q Consensus 1421 ~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~-~~g~~le~i~srl~~i~~~~~ 1499 (2114)
|+.+|||...+ ..+.++|+|.|.|-+++-+ ....++++.+||+||+|.+.+ +||.+||.++- .++
T Consensus 367 -vgLlTGDvqin----PeAsCLIMTTEILRsMLYr--gadliRDvE~VIFDEVHYiND~eRGvVWEEViI-------MlP 432 (1248)
T KOG0947|consen 367 -VGLLTGDVQIN----PEASCLIMTTEILRSMLYR--GADLIRDVEFVIFDEVHYINDVERGVVWEEVII-------MLP 432 (1248)
T ss_pred -cceeecceeeC----CCcceEeehHHHHHHHHhc--ccchhhccceEEEeeeeecccccccccceeeee-------ecc
Confidence 45899998766 5678999999999888766 455789999999999999998 79999998873 248
Q ss_pred CCceEEEEcccCCChhHHHHHhcCCCC-ceeecCCCCCccCcEEEEecccc-------------cchHHHHHh-------
Q 000129 1500 NKIRIVALSTSLANAKDLGEWIGATSH-GLFNFPPGVRPVPLEIHIQGVDI-------------TNFEARMQA------- 1558 (2114)
Q Consensus 1500 ~~~riV~lSATl~n~~dla~wl~~~~~-~~~~f~~~~rpv~l~~~~~~~~~-------------~~~~~~~~~------- 1558 (2114)
.++++|+||||+||..+||+|+|.... .++..+...||||++.++..-.. ..+......
T Consensus 433 ~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~ 512 (1248)
T KOG0947|consen 433 RHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKF 512 (1248)
T ss_pred ccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccc
Confidence 899999999999999999999998764 46777778999999987632200 000000000
Q ss_pred ----------------------------------c-CH--HHHHHHHHHhcC--CCCEEEEeCChHHHHHHHHHHHHhhc
Q 000129 1559 ----------------------------------M-TK--PTFTAIVQHAKN--EKPALVFVPSRKYVRLTAVDLMTYSS 1599 (2114)
Q Consensus 1559 ----------------------------------~-~~--~~~~~i~~~l~~--~~~~LVFv~sr~~a~~la~~L~~~~~ 1599 (2114)
. .+ +.+..+..++.. --|++|||-||+.|...|..|...--
T Consensus 513 ~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL 592 (1248)
T KOG0947|consen 513 VDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNL 592 (1248)
T ss_pred cccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCc
Confidence 0 00 234455555433 35899999999999999998865433
Q ss_pred cCCcccccccCCCcccchhhHh----hhhH--------HHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecC
Q 000129 1600 MDGDQKSAFLLWPAEEVEPFID----NIQE--------EMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSS 1667 (2114)
Q Consensus 1600 ~~~~~~~~~l~~~~~~l~~~~~----~i~d--------~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~ 1667 (2114)
.++.. ..++.-+++ ++++ ..+.+.+..|+++||||+-+--+..|+.+|..|-++||+||.
T Consensus 593 ~~~~E--------KseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATE 664 (1248)
T KOG0947|consen 593 TDSKE--------KSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATE 664 (1248)
T ss_pred ccchh--------HHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehh
Confidence 22222 223332222 2221 346678889999999999999999999999999999999999
Q ss_pred ccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecC--cHHHHHHHH
Q 000129 1668 SMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP--RKEYYKKFL 1737 (2114)
Q Consensus 1668 ~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~--~~~~~~~~l 1737 (2114)
++|+|||.|+.+||+.+.+..||.+.+ ...+.+|.||+|||||.|.|..|.++++|... ....+++++
T Consensus 665 TFAMGVNMPARtvVF~Sl~KhDG~efR--~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li 734 (1248)
T KOG0947|consen 665 TFAMGVNMPARTVVFSSLRKHDGNEFR--ELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLI 734 (1248)
T ss_pred hhhhhcCCCceeEEeeehhhccCccee--ecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhHh
Confidence 999999999999999999999999754 45789999999999999999999999999875 445555555
No 73
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.2e-37 Score=406.04 Aligned_cols=410 Identities=28% Similarity=0.396 Sum_probs=308.7
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
+|-++|++++.. +..+++|++|||||||||.++..+|...+..+. +++|++|.|||.+|.+++|..++
T Consensus 119 ~LD~fQ~~a~~~-Ler~esVlV~ApTssGKTvVaeyAi~~al~~~q-----------rviYTsPIKALsNQKyrdl~~~f 186 (1041)
T COG4581 119 ELDPFQQEAIAI-LERGESVLVCAPTSSGKTVVAEYAIALALRDGQ-----------RVIYTSPIKALSNQKYRDLLAKF 186 (1041)
T ss_pred CcCHHHHHHHHH-HhCCCcEEEEccCCCCcchHHHHHHHHHHHcCC-----------ceEeccchhhhhhhHHHHHHHHh
Confidence 789999999975 566778999999999999999999998887542 69999999999999999999988
Q ss_pred ccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-CCchhHHHHHHHHHHH
Q 000129 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQ 653 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~rl~~~ 653 (2114)
+...-.|+.+|||.+.+. .+.++|+|.|-+..+..+.. ..+..+..||+||+|.+.| +||.++|.++-.
T Consensus 187 gdv~~~vGL~TGDv~IN~----~A~clvMTTEILRnMlyrg~--~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~---- 256 (1041)
T COG4581 187 GDVADMVGLMTGDVSINP----DAPCLVMTTEILRNMLYRGS--ESLRDIEWVVFDEVHYIGDRERGVVWEEVIIL---- 256 (1041)
T ss_pred hhhhhhccceecceeeCC----CCceEEeeHHHHHHHhccCc--ccccccceEEEEeeeeccccccchhHHHHHHh----
Confidence 643234689999988765 58899999998855555443 5788999999999999999 799999988764
Q ss_pred HhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEee-------ccCchh--HHHHHhhHHHH
Q 000129 654 IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGI-------QVKKPL--QRFQLMNDLCY 724 (2114)
Q Consensus 654 ~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~-------~~~~~~--~~~~~~~~~~~ 724 (2114)
.+..+++|+||||+||.++++.|+......++......+||+||.++++.- ...... ..+...+..+.
T Consensus 257 ---lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~ 333 (1041)
T COG4581 257 ---LPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLS 333 (1041)
T ss_pred ---cCCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhh
Confidence 367899999999999999999999977778888999999999999877532 111110 00000000000
Q ss_pred ----------------------------------HHHHHH---hCCCeEEEEecChHHHHHHHHHHHHHhhccccccccc
Q 000129 725 ----------------------------------EKVVAV---AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFL 767 (2114)
Q Consensus 725 ----------------------------------~~i~~~---~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l 767 (2114)
-.+... .+.-|+|+|+-|++.|+..+..+.........-
T Consensus 334 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~---- 409 (1041)
T COG4581 334 CFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEE---- 409 (1041)
T ss_pred ccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCc----
Confidence 011111 124589999999999999999887432211100
Q ss_pred ccCchhHHHHHhhhcccC---------cchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCc
Q 000129 768 KEDSVSREILQSHTDMVK---------SNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPA 838 (2114)
Q Consensus 768 ~~~~~~~~~l~~~~~~~~---------~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~ 838 (2114)
.+..-..++...+.... -..+..++..|+|+|||||-+..|..|+.+|..|.++|++||.|++.|+|+|+
T Consensus 410 -~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPa 488 (1041)
T COG4581 410 -KERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPA 488 (1041)
T ss_pred -HHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcc
Confidence 00002233443333322 23456778899999999999999999999999999999999999999999999
Q ss_pred eEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCC--cHHHHHHh-hcCCCcccchhhHhhHHH
Q 000129 839 HTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS--ELRYYLSL-MNQQLPIESQFVSKLADQ 915 (2114)
Q Consensus 839 v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~--e~~~~~~l-l~~~~pies~l~~~l~d~ 915 (2114)
.+||+-....+|... ..+++..+|.||.|||||.|.|..|.+|++-... +......+ .....|+.|+|.-.+...
T Consensus 489 rtvv~~~l~K~dG~~--~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~~~~~e~~~l~~~~~~~L~s~f~~sy~mi 566 (1041)
T COG4581 489 RTVVFTSLSKFDGNG--HRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFESEPSEAAGLASGKLDPLRSQFRLSYNMI 566 (1041)
T ss_pred cceeeeeeEEecCCc--eeecChhHHHHhhhhhccccccccceEEEecCCCCCChHHHHHhhcCCCccchhheecchhHH
Confidence 999999888888654 6789999999999999999999999999995442 23444444 445668888887665555
Q ss_pred HHHHHhhccccChHHHHHHHHhhHH
Q 000129 916 LNAEIVLGTVQNAKEACNWIGYTYL 940 (2114)
Q Consensus 916 l~~ei~~~~i~~~~~~~~wl~~t~~ 940 (2114)
+|.- .+...+.+-..+.++|.
T Consensus 567 lnll----~v~~l~~~e~ll~~Sf~ 587 (1041)
T COG4581 567 LNLL----RVEGLQTAEDLLERSFA 587 (1041)
T ss_pred Hhhh----hhcccCcHHHHHHhhHH
Confidence 5532 33334444455555554
No 74
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.6e-38 Score=342.34 Aligned_cols=353 Identities=15% Similarity=0.264 Sum_probs=269.0
Q ss_pred CCCCCcccccChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEE
Q 000129 1318 DLQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYI 1396 (2114)
Q Consensus 1318 dl~p~~~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I 1396 (2114)
-...+.-..|+...++.+|. ||..|..+|+.|++.++.+++ |++.|..|+|||.+|-+.+++.+.-.... .+++++
T Consensus 25 v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrd-ViaQaqSGTGKTa~~si~vlq~~d~~~r~--tQ~lil 101 (400)
T KOG0328|consen 25 VIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRD-VIAQAQSGTGKTATFSISVLQSLDISVRE--TQALIL 101 (400)
T ss_pred cccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccc-eEEEecCCCCceEEEEeeeeeecccccce--eeEEEe
Confidence 33455567888999999998 899999999999999999766 99999999999999999888877653333 389999
Q ss_pred cccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCccc--chhhccCC-cEEEEChhhHHHHHhhhcccccccceeEEEeccc
Q 000129 1397 APLEALAKERYRDWEIKFGQGLGMRVVELTGETAM--DLKLLEKG-QIIISTPEKWDALSRRWKQRKYVQQVSLFIIDEL 1473 (2114)
Q Consensus 1397 ~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~--~~~~l~~~-~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEa 1473 (2114)
.|||+||.|+.+.+. .++..+++++-.+.|+.+. |.+.+.-+ +++.+||+++..++++ ....-+.+.++|+||+
T Consensus 102 sPTRELa~Qi~~vi~-alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr--~~L~tr~vkmlVLDEa 178 (400)
T KOG0328|consen 102 SPTRELAVQIQKVIL-ALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKR--RSLRTRAVKMLVLDEA 178 (400)
T ss_pred cChHHHHHHHHHHHH-HhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHh--ccccccceeEEEeccH
Confidence 999999999999998 6888899999999988764 45555555 9999999999988887 3445678999999999
Q ss_pred ccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHHHhcCCCCceeecCCCCCccCcEEEEecccccch
Q 000129 1474 HLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNF 1552 (2114)
Q Consensus 1474 H~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~ 1552 (2114)
|.+++.+ +-.++-.+.+.+++..|++++|||+|.. .+..+.+-..+..++.-.....---+...+...+...+
T Consensus 179 DemL~kg------fk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~Eew 252 (400)
T KOG0328|consen 179 DEMLNKG------FKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEW 252 (400)
T ss_pred HHHHHhh------HHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhh
Confidence 9887664 4444555555668999999999999752 23444443333333321111100001111111111111
Q ss_pred HHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHh
Q 000129 1553 EARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL 1632 (2114)
Q Consensus 1553 ~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l 1632 (2114)
.. .....+... ..-.+++|||||++.+..+.+.+.. .
T Consensus 253 Kf-------dtLcdLYd~-LtItQavIFcnTk~kVdwLtekm~~-----------------------------------~ 289 (400)
T KOG0328|consen 253 KF-------DTLCDLYDT-LTITQAVIFCNTKRKVDWLTEKMRE-----------------------------------A 289 (400)
T ss_pred hH-------hHHHHHhhh-hehheEEEEecccchhhHHHHHHHh-----------------------------------h
Confidence 10 111222222 2346899999999998777765532 2
Q ss_pred ccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCC
Q 000129 1633 RHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASR 1712 (2114)
Q Consensus 1633 ~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR 1712 (2114)
.+.|..+||+|++++|..+.+.|++|+.+||++|++-+||+|+|.+.+|| +|+.|.....|+||+||+||
T Consensus 290 nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslvi----------NYDLP~nre~YIHRIGRSGR 359 (400)
T KOG0328|consen 290 NFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVI----------NYDLPNNRELYIHRIGRSGR 359 (400)
T ss_pred CceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEE----------ecCCCccHHHHhhhhccccc
Confidence 34589999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCCCCceEEEEEeecCcHHHHHHHH
Q 000129 1713 PLLDNSGKCVILCHAPRKEYYKKFL 1737 (2114)
Q Consensus 1713 ~~~~~~G~~iil~~~~~~~~~~~~l 1737 (2114)
- ++.|.++-|+.+.+...++.+.
T Consensus 360 F--GRkGvainFVk~~d~~~lrdie 382 (400)
T KOG0328|consen 360 F--GRKGVAINFVKSDDLRILRDIE 382 (400)
T ss_pred c--CCcceEEEEecHHHHHHHHHHH
Confidence 5 8999999999998877766555
No 75
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=9.7e-37 Score=383.21 Aligned_cols=613 Identities=20% Similarity=0.289 Sum_probs=410.0
Q ss_pred CCCCCCHHHHHHHHH--HHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000129 1338 GFKHFNPIQTQVFTV--LYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~--il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~ 1415 (2114)
|...++.+|.+|+.. ++ .+.|.|.++||+.|||+++++-+++..... .+ .++.+.|..+.+.+....+. .|.
T Consensus 220 gi~~~fewq~ecls~~~~~-e~~nliys~Pts~gktlvaeilml~~~l~~--rr--~~llilp~vsiv~Ek~~~l~-~~~ 293 (1008)
T KOG0950|consen 220 GILKLFEWQAECLSLPRLL-ERKNLIYSLPTSAGKTLVAEILMLREVLCR--RR--NVLLILPYVSIVQEKISALS-PFS 293 (1008)
T ss_pred hHHHHHHHHHHHhcchhhh-cccceEEeCCCccchHHHHHHHHHHHHHHH--hh--ceeEecceeehhHHHHhhhh-hhc
Confidence 577899999999864 55 688999999999999999999999887763 33 78999999999999888887 566
Q ss_pred CCCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC-CCCchHHHHHHHHHHH
Q 000129 1416 QGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYI 1494 (2114)
Q Consensus 1416 ~~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~-~~g~~le~i~srl~~i 1494 (2114)
..+|+.|-...|..... +..+.-++.|||.|+-..+..+.-....+..+++|||||.|++++ .+|..+|.+++.+.+.
T Consensus 294 ~~~G~~ve~y~g~~~p~-~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~ 372 (1008)
T KOG0950|consen 294 IDLGFPVEEYAGRFPPE-KRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYE 372 (1008)
T ss_pred cccCCcchhhcccCCCC-CcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHh
Confidence 66799998888766544 334556899999999888877655555688899999999999998 5899999999999988
Q ss_pred HhhcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHH---hcC----------H
Q 000129 1495 ASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQ---AMT----------K 1561 (2114)
Q Consensus 1495 ~~~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~---~~~----------~ 1561 (2114)
... ..+|+||||||++|..+++.|+.+. .+...+||+|+..++..-....-..++. ... .
T Consensus 373 ~~~--~~~~iIGMSATi~N~~lL~~~L~A~-----~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~d 445 (1008)
T KOG0950|consen 373 NLE--TSVQIIGMSATIPNNSLLQDWLDAF-----VYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLYSSNLGDED 445 (1008)
T ss_pred ccc--cceeEeeeecccCChHHHHHHhhhh-----heecccCcccchhccCCCcccccchhhHHHHHhhhhhhhhcccCC
Confidence 653 3488999999999999999999854 3567789999987764322111111111 000 0
Q ss_pred --HHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccC-CCcccchhhH---hhhhHHHHHHHhccc
Q 000129 1562 --PTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLL-WPAEEVEPFI---DNIQEEMLKATLRHG 1635 (2114)
Q Consensus 1562 --~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~-~~~~~l~~~~---~~i~d~~L~~~l~~g 1635 (2114)
.....+.+.+.++.++|||||+|+.|+.+|..++........... +.. +......... ...-|..++..+.+|
T Consensus 446 pD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~-~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~G 524 (1008)
T KOG0950|consen 446 PDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEK-RLGLWELLSISNLLRRIPGILDPVLAKTIPYG 524 (1008)
T ss_pred CcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhh-hhhHHHHHHHHhHhhcCCcccchHHheecccc
Confidence 111222233345667999999999999999877665433211111 110 0000011111 112346688899999
Q ss_pred eEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCC
Q 000129 1636 VGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLL 1715 (2114)
Q Consensus 1636 V~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~ 1715 (2114)
++|||+|++.++|+.|+..|++|.+.|++||+++++|+|+|+.+|||+ .+++. ....+..+|.||+|||||+|.
T Consensus 525 vAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIir-aP~~g-----~~~l~~~~YkQM~GRAGR~gi 598 (1008)
T KOG0950|consen 525 VAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIR-APYVG-----REFLTRLEYKQMVGRAGRTGI 598 (1008)
T ss_pred ceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEe-CCccc-----cchhhhhhHHhhhhhhhhccc
Confidence 999999999999999999999999999999999999999999999993 22222 123567899999999999999
Q ss_pred CCceEEEEEeecCcHHHHHHHHHhccCCCCccccCC-------------------CccchHHH--------------HHH
Q 000129 1716 DNSGKCVILCHAPRKEYYKKFLRLTQNPNYYNLQGV-------------------SHRHLSDH--------------LSE 1762 (2114)
Q Consensus 1716 ~~~G~~iil~~~~~~~~~~~~lRl~~nP~~y~l~~~-------------------s~~~l~~~--------------lse 1762 (2114)
|..|.++++|.+.++..+..+++.-..|.+-.+..- +..++..+ .++
T Consensus 599 dT~GdsiLI~k~~e~~~~~~lv~~~~~~~~S~l~~e~~g~~~~~ilsvI~~~ia~t~~di~~~va~tl~s~q~~~~~~~~ 678 (1008)
T KOG0950|consen 599 DTLGDSILIIKSSEKKRVRELVNSPLKPLNSCLSNEVNGPILMAILSLISLKIAETAEDILHFVAVTLLSAQEKPENVRE 678 (1008)
T ss_pred ccCcceEEEeeccchhHHHHHHhccccccccccccccccccceeehhhhcchhhhhHHHHHHHHHHhhhhcccchhhhhh
Confidence 999999999999998777777754444433322100 00111111 011
Q ss_pred HHHHHHHH----------HHHCCCce-ec-CCCccccCcccchhhhcccCHhHHHHHHhhcCCCCC---hhhHHHHHhcC
Q 000129 1763 LVENTISD----------LEASKCII-IE-EDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKTR---MKGLLEVLASA 1827 (2114)
Q Consensus 1763 lve~~l~~----------L~~~~~I~-~~-~~~~~~~t~lG~i~s~y~i~~~T~~~f~~sl~~~~~---~~~iL~ils~a 1827 (2114)
..+..... +.+..+|. .. +.....+|.+|...=.-.+++.-.-.+...|..... +...+++|---
T Consensus 679 ~le~~s~ql~~~~~~~d~~l~~d~i~~~~~~~~~~~~t~Lg~a~f~~~~~~~~a~~l~~~L~~~~~~~vle~~lh~lylv 758 (1008)
T KOG0950|consen 679 QLEMESDQLVINDFKSDQLLEKDFIYKKQIENLRENITRLGRACFNAGSDPEVANILFADLKKSLPQLVLESSLHLLYLV 758 (1008)
T ss_pred cccchhhhhccchhhHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCChhhhHHHHHHHHHhhhccccccccceeeee
Confidence 11111111 11111111 00 011122778888766667776655544433322211 11111111000
Q ss_pred ccc-cCCCCCcchHHHHHHHHhhCCccc---------------------CCCCCCChH----HHHHHHHHHHhcCCCCC-
Q 000129 1828 SEY-AQLPIRPGEEEVVRRLIHHQRFSF---------------------ENPKFTDPH----VKANALLQAHFSRQQVG- 1880 (2114)
Q Consensus 1828 ~Ef-~~i~vR~~E~~~l~~L~~~~p~~~---------------------~~~~~~~~~----~K~~lLLqahlsr~~lp- 1880 (2114)
.=| ... +..+.-++..+...+|-.. ......... .=+.+.||..++..+++
T Consensus 759 tP~~~~~--~~~dwli~f~i~~~L~~~~~~~~~~~G~~e~fi~~~~~gqs~~~~~~~~~~~r~y~~l~L~~li~espi~~ 836 (1008)
T KOG0950|consen 759 TPYLEVM--NDIDWLIYFQIYHTLPSPEQKLAKLLGVIESFIEKCVSGQSVRNLQNVQKRKRLYVALALQKLINESPIRT 836 (1008)
T ss_pred cchHhhc--ccccHHHHHHHHhcCCcHHHHHHhhhchHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHhhCcHHH
Confidence 000 000 0111111222222211100 001111121 22567788999888776
Q ss_pred --CCc---hhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHHHHcCCCC
Q 000129 1881 --GNL---KLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGK 1955 (2114)
Q Consensus 1881 --~~l---~~D~~~il~~a~rLl~a~vdi~~~~g~l~~al~~m~L~q~i~Qg~w~~~s~L~QLP~i~~~~~~~l~~~~~~ 1955 (2114)
..| ++=+...+.++.....+..-.+.+.+|..-....-++.+++..|.-.+..||+.+|++...+++.++.+|
T Consensus 837 V~~kYk~~rg~lqall~~a~~~a~~It~Fce~l~w~~~~~l~~~~~~rl~~g~~~eL~~Lmrv~~~~~~RAr~lf~Ag-- 914 (1008)
T KOG0950|consen 837 VAEKYKVERGRLQALLSNASSFASLITFFCESIQWFPLRALLSEFYGRLSFGGHAELIPLMRVPDVKAERARQLFKAG-- 914 (1008)
T ss_pred HHHHhCchHHHHHHHHhcchhHHHHHHHHHHHhhhcchHHHHHHHHHHHhccchhhhhhhhcCchhHHHHHHHHHHhh--
Confidence 223 5667788889999999888888899997433444578889999999999999999999999999999999
Q ss_pred cccCHHHHhcCCHHHHHHHhc
Q 000129 1956 SIETVFDLVEMEDDERRELLQ 1976 (2114)
Q Consensus 1956 ~i~t~~dl~~~~~~~r~~ll~ 1976 (2114)
++|+.++++..+.+..+-|.
T Consensus 915 -f~tv~~iA~a~p~klvkel~ 934 (1008)
T KOG0950|consen 915 -FTSVGSIANATPEKLVKELP 934 (1008)
T ss_pred -ccchHHHhcCChHHHHHHhh
Confidence 99999999999988766553
No 76
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=6.2e-37 Score=395.67 Aligned_cols=328 Identities=21% Similarity=0.278 Sum_probs=237.7
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.||+.|+|+|.++++.++.+. +++++||||||||++|++|++.. +..+|||+|+++|+.|++..+
T Consensus 7 ~g~~~~r~~Q~~ai~~~l~g~-dvlv~apTGsGKTl~y~lp~l~~--------------~~~~lVi~P~~~L~~dq~~~l 71 (470)
T TIGR00614 7 FGLSSFRPVQLEVINAVLLGR-DCFVVMPTGGGKSLCYQLPALCS--------------DGITLVISPLISLMEDQVLQL 71 (470)
T ss_pred cCCCCCCHHHHHHHHHHHcCC-CEEEEcCCCCcHhHHHHHHHHHc--------------CCcEEEEecHHHHHHHHHHHH
Confidence 489999999999999999876 59999999999999999998752 126899999999999999988
Q ss_pred HHhhccCCcEEEEEeCCCccChh-------hhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhH
Q 000129 571 SNRLQMYDVKVRELSGDQTLTRQ-------QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVL 643 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~-------~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~l 643 (2114)
.. .|+.+..++|+...... .....+|+++|||++....+.........++++|||||||++.+ .|..+
T Consensus 72 ~~----~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~-~g~~f 146 (470)
T TIGR00614 72 KA----SGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQ-WGHDF 146 (470)
T ss_pred HH----cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCc-ccccc
Confidence 75 47888888887654421 12357999999998621111110001356799999999999875 23223
Q ss_pred HHHHHHHHHHHhhccccccEEEEccccCCh--HHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhH
Q 000129 644 ESIVARTVRQIETTKEHIRLVGLSATLPNY--EDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMND 721 (2114)
Q Consensus 644 e~iv~rl~~~~~~~~~~~riv~lSATlpn~--~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~ 721 (2114)
...+.++... ....+++++++||||+++. .++..+++.. .+.++..+..|| .+... +..+.. .....
T Consensus 147 r~~~~~l~~l-~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~--~~~~~~~s~~r~-nl~~~---v~~~~~-~~~~~--- 215 (470)
T TIGR00614 147 RPDYKALGSL-KQKFPNVPIMALTATASPSVREDILRQLNLK--NPQIFCTSFDRP-NLYYE---VRRKTP-KILED--- 215 (470)
T ss_pred HHHHHHHHHH-HHHcCCCceEEEecCCCHHHHHHHHHHcCCC--CCcEEeCCCCCC-CcEEE---EEeCCc-cHHHH---
Confidence 3222232222 2234678999999998752 4566666543 222222222232 22211 111111 11111
Q ss_pred HHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEec
Q 000129 722 LCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHH 801 (2114)
Q Consensus 722 ~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hH 801 (2114)
+...+.....+..+||||+|++.|+.++..|...+ ..++.+|
T Consensus 216 -l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g-------------------------------------~~~~~~H 257 (470)
T TIGR00614 216 -LLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLG-------------------------------------IAAGAYH 257 (470)
T ss_pred -HHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcC-------------------------------------CCeeEee
Confidence 22223333445677999999999999999987643 2367789
Q ss_pred CCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceE
Q 000129 802 AGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGE 881 (2114)
Q Consensus 802 agl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~ 881 (2114)
|+|++++|..+++.|++|.++|||||+++++|||+|++++||+ |+++. |..+|+||+|||||.| ..|.
T Consensus 258 ~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~----~~~P~------s~~~y~Qr~GRaGR~G--~~~~ 325 (470)
T TIGR00614 258 AGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIH----YSLPK------SMESYYQESGRAGRDG--LPSE 325 (470)
T ss_pred CCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEE----eCCCC------CHHHHHhhhcCcCCCC--CCce
Confidence 9999999999999999999999999999999999999999999 77765 7889999999999988 6799
Q ss_pred EEEEcCCCcHHHHHHhhc
Q 000129 882 GIIITGHSELRYYLSLMN 899 (2114)
Q Consensus 882 ~iil~~~~e~~~~~~ll~ 899 (2114)
|+++++..+...+..++.
T Consensus 326 ~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 326 CHLFYAPADINRLRRLLM 343 (470)
T ss_pred EEEEechhHHHHHHHHHh
Confidence 999999988877777654
No 77
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=8.7e-37 Score=394.29 Aligned_cols=333 Identities=20% Similarity=0.318 Sum_probs=249.9
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHH
Q 000129 1332 YEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2114)
Q Consensus 1332 ~~~l~~gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~ 1411 (2114)
++..| ||+.|+|+|.++++.+++++ ++++++|||||||+||++|++. ..+ .+|||+|+++|+.|++..+.
T Consensus 3 l~~~~-g~~~~r~~Q~~ai~~~l~g~-dvlv~apTGsGKTl~y~lp~l~------~~~--~~lVi~P~~~L~~dq~~~l~ 72 (470)
T TIGR00614 3 LKTVF-GLSSFRPVQLEVINAVLLGR-DCFVVMPTGGGKSLCYQLPALC------SDG--ITLVISPLISLMEDQVLQLK 72 (470)
T ss_pred hHhhc-CCCCCCHHHHHHHHHHHcCC-CEEEEcCCCCcHhHHHHHHHHH------cCC--cEEEEecHHHHHHHHHHHHH
Confidence 44555 59999999999999999876 5999999999999999999874 234 79999999999999999887
Q ss_pred HHhcCCCCcEEEEEcCCcccch-----hhc--cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchH
Q 000129 1412 IKFGQGLGMRVVELTGETAMDL-----KLL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVL 1484 (2114)
Q Consensus 1412 ~~f~~~~g~~v~~l~G~~~~~~-----~~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~l 1484 (2114)
. .|+.+..++|+...+. ..+ ...+|+++|||++....+.+.......++++|||||||++.++ |..+
T Consensus 73 ~-----~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~-g~~f 146 (470)
T TIGR00614 73 A-----SGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQW-GHDF 146 (470)
T ss_pred H-----cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCcc-cccc
Confidence 3 2678888888766441 112 2358999999997542221111114678999999999999755 4555
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEcccCCCh--hHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHH
Q 000129 1485 EVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKP 1562 (2114)
Q Consensus 1485 e~i~srl~~i~~~~~~~~riV~lSATl~n~--~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~ 1562 (2114)
...+.++..+...+ ++.+++++|||+++. .++.++++.....++..+. .|| .+...+..... . . ...
T Consensus 147 r~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~-~r~-nl~~~v~~~~~-~---~----~~~ 215 (470)
T TIGR00614 147 RPDYKALGSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCTSF-DRP-NLYYEVRRKTP-K---I----LED 215 (470)
T ss_pred HHHHHHHHHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCC-CCC-CcEEEEEeCCc-c---H----HHH
Confidence 55555665555444 478899999999774 5788888876544443222 222 22222221110 0 0 011
Q ss_pred HHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCC
Q 000129 1563 TFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEG 1642 (2114)
Q Consensus 1563 ~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ 1642 (2114)
....+... .+++.+||||+|++.|+.++..|.. .+..+..+||+
T Consensus 216 l~~~l~~~-~~~~~~IIF~~s~~~~e~la~~L~~-----------------------------------~g~~~~~~H~~ 259 (470)
T TIGR00614 216 LLRFIRKE-FKGKSGIIYCPSRKKSEQVTASLQN-----------------------------------LGIAAGAYHAG 259 (470)
T ss_pred HHHHHHHh-cCCCceEEEECcHHHHHHHHHHHHh-----------------------------------cCCCeeEeeCC
Confidence 12222222 3556679999999999999977632 23468899999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEE
Q 000129 1643 LNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCV 1722 (2114)
Q Consensus 1643 ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~i 1722 (2114)
|++++|..+++.|++|.++|||||+++++|||+|++.+|| +++.|.++.+|+||+|||||. +..|.|+
T Consensus 260 l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI----------~~~~P~s~~~y~Qr~GRaGR~--G~~~~~~ 327 (470)
T TIGR00614 260 LEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVI----------HYSLPKSMESYYQESGRAGRD--GLPSECH 327 (470)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEE----------EeCCCCCHHHHHhhhcCcCCC--CCCceEE
Confidence 9999999999999999999999999999999999999999 899999999999999999997 6799999
Q ss_pred EEeecCcHHHHHHHHHh
Q 000129 1723 ILCHAPRKEYYKKFLRL 1739 (2114)
Q Consensus 1723 il~~~~~~~~~~~~lRl 1739 (2114)
+++...+...+++++..
T Consensus 328 ~~~~~~d~~~~~~~~~~ 344 (470)
T TIGR00614 328 LFYAPADINRLRRLLME 344 (470)
T ss_pred EEechhHHHHHHHHHhc
Confidence 99998888877777643
No 78
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=2.7e-37 Score=363.93 Aligned_cols=344 Identities=19% Similarity=0.225 Sum_probs=268.5
Q ss_pred hHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhc--cCCCceEEEEEcccHHHHHHH
Q 000129 1330 PLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA--SETGVMRAVYIAPLEALAKER 1406 (2114)
Q Consensus 1330 ~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~--~~~~~~k~l~I~Ptr~La~q~ 1406 (2114)
+..+.+-. +|..++.+|+++|+.++.|++ ||-+|.||||||++|++|+++++... .+..++-||+|.|||+||.|+
T Consensus 79 ~t~kgLke~~fv~~teiQ~~~Ip~aL~G~D-vlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~Qt 157 (758)
T KOG0343|consen 79 KTLKGLKEAKFVKMTEIQRDTIPMALQGHD-VLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQT 157 (758)
T ss_pred HHHHhHhhcCCccHHHHHHhhcchhccCcc-cccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHH
Confidence 33444433 599999999999999999888 99999999999999999999998764 234456899999999999999
Q ss_pred HHHHHHHhcCCCCcEEEEEcCCcccc--hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchH
Q 000129 1407 YRDWEIKFGQGLGMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVL 1484 (2114)
Q Consensus 1407 ~~~~~~~f~~~~g~~v~~l~G~~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~l 1484 (2114)
+..+. +.|+..+.+.+.+.|+.... ...+.+.+|+||||+++..++.... ...-.++.++|+||||++.+.+
T Consensus 158 FevL~-kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~-~f~t~~lQmLvLDEADR~LDMG---- 231 (758)
T KOG0343|consen 158 FEVLN-KVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENP-NFSTSNLQMLVLDEADRMLDMG---- 231 (758)
T ss_pred HHHHH-HHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcC-CCCCCcceEEEeccHHHHHHHh----
Confidence 99998 78888899999999987755 4466778999999999887776522 2245679999999999998876
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEcccCCC-hhHHHHHhcCCCCceeecC---CCCCccCcEEEEecccccchHHHHHhcC
Q 000129 1485 EVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFP---PGVRPVPLEIHIQGVDITNFEARMQAMT 1560 (2114)
Q Consensus 1485 e~i~srl~~i~~~~~~~~riV~lSATl~n-~~dla~wl~~~~~~~~~f~---~~~rpv~l~~~~~~~~~~~~~~~~~~~~ 1560 (2114)
+-..+..|...++...|.++||||..+ ..|++..--..+. ++.++ ...-|..+...+...+..+- .
T Consensus 232 --Fk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~-~vsvhe~a~~atP~~L~Q~y~~v~l~~K-------i 301 (758)
T KOG0343|consen 232 --FKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPV-YVSVHENAVAATPSNLQQSYVIVPLEDK-------I 301 (758)
T ss_pred --HHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCc-EEEEeccccccChhhhhheEEEEehhhH-------H
Confidence 667777777888999999999999876 4567664332221 22211 12223333333222221111 1
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeec
Q 000129 1561 KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLH 1640 (2114)
Q Consensus 1561 ~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H 1640 (2114)
..++..|..| ...++|||++|.+++..++..++..- .+..+..+|
T Consensus 302 ~~L~sFI~sh--lk~K~iVF~SscKqvkf~~e~F~rlr---------------------------------pg~~l~~L~ 346 (758)
T KOG0343|consen 302 DMLWSFIKSH--LKKKSIVFLSSCKQVKFLYEAFCRLR---------------------------------PGIPLLALH 346 (758)
T ss_pred HHHHHHHHhc--cccceEEEEehhhHHHHHHHHHHhcC---------------------------------CCCceeeec
Confidence 1234444444 46789999999999998887664321 234578899
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceE
Q 000129 1641 EGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGK 1720 (2114)
Q Consensus 1641 ~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~ 1720 (2114)
|+|++..|..|+..|....--||+||++++||+|+|++.+|| ++++|..+.+|+||+||+.|. +..|.
T Consensus 347 G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwVi----------Q~DCPedv~tYIHRvGRtAR~--~~~G~ 414 (758)
T KOG0343|consen 347 GTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVI----------QVDCPEDVDTYIHRVGRTARY--KERGE 414 (758)
T ss_pred cchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEE----------EecCchhHHHHHHHhhhhhcc--cCCCc
Confidence 999999999999999999999999999999999999999999 899999999999999999997 89999
Q ss_pred EEEEeecCcHHHHHHHH
Q 000129 1721 CVILCHAPRKEYYKKFL 1737 (2114)
Q Consensus 1721 ~iil~~~~~~~~~~~~l 1737 (2114)
++++..+++.+.+-.-+
T Consensus 415 sll~L~psEeE~~l~~L 431 (758)
T KOG0343|consen 415 SLLMLTPSEEEAMLKKL 431 (758)
T ss_pred eEEEEcchhHHHHHHHH
Confidence 99999999866655555
No 79
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.6e-38 Score=372.70 Aligned_cols=383 Identities=21% Similarity=0.267 Sum_probs=269.2
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCC---CCCCCCCcE--EE
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDD---GSFNHSNYK--IV 554 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~---g~~~~~~~k--il 554 (2114)
||..+..++ .||..|++||+.++|.++.+.-++|..|.||||||++|-+||+..+....... .......++ ++
T Consensus 188 lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~L 267 (731)
T KOG0347|consen 188 LPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIAL 267 (731)
T ss_pred CCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeE
Confidence 344444554 69999999999999999999777999999999999999999999665432211 011122334 99
Q ss_pred EEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhH-HHHHHhccCCCcccccccEEEEe
Q 000129 555 YVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEK-WDIITRKSGDRTYTQLVKLLIID 630 (2114)
Q Consensus 555 ~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek-~d~l~r~~~~~~~l~~v~liIiD 630 (2114)
|++|||+||.|+.+.+.......+++|..++|+....+++ ...++|+|+||++ |.++.........++.++++|+|
T Consensus 268 V~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlD 347 (731)
T KOG0347|consen 268 VVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLD 347 (731)
T ss_pred EecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEc
Confidence 9999999999999999999888999999999998877765 2578999999999 57666555445567889999999
Q ss_pred ccccccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEe-----------ecCCcccc
Q 000129 631 EIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFY-----------FDNSYRPV 698 (2114)
Q Consensus 631 EaH~l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~-----------f~~~~rpv 698 (2114)
|+++|.+ +.-..+..++..+. -++.....|.+.+|||+.-. ...-+........-. -.-.++.-
T Consensus 348 EaDRmvekghF~Els~lL~~L~--e~~~~~qrQTlVFSATlt~~--~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~k 423 (731)
T KOG0347|consen 348 EADRMVEKGHFEELSKLLKHLN--EEQKNRQRQTLVFSATLTLV--LQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGK 423 (731)
T ss_pred cHHHHhhhccHHHHHHHHHHhh--hhhcccccceEEEEEEeehh--hcChhHHhhhccchhhhhhHHHHHHHHHhCccCC
Confidence 9999987 45556666666554 13345677999999998621 111111000000000 00001110
Q ss_pred cceeEEEeeccCchhHHHHHhhHH------------HHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccc
Q 000129 699 PLSQQYIGIQVKKPLQRFQLMNDL------------CYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRF 766 (2114)
Q Consensus 699 ~l~~~~~~~~~~~~~~~~~~~~~~------------~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~ 766 (2114)
| .++..+... .-...+.+. +|-.+.. -.+++|||||+...+.+++-.|....+..-
T Consensus 424 p---kiiD~t~q~--~ta~~l~Es~I~C~~~eKD~ylyYfl~r--yPGrTlVF~NsId~vKRLt~~L~~L~i~p~----- 491 (731)
T KOG0347|consen 424 P---KIIDLTPQS--ATASTLTESLIECPPLEKDLYLYYFLTR--YPGRTLVFCNSIDCVKRLTVLLNNLDIPPL----- 491 (731)
T ss_pred C---eeEecCcch--hHHHHHHHHhhcCCccccceeEEEEEee--cCCceEEEechHHHHHHHHHHHhhcCCCCc-----
Confidence 1 111111110 000000000 0000111 167899999999999999998876554332
Q ss_pred cccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecc
Q 000129 767 LKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGT 846 (2114)
Q Consensus 767 l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~ 846 (2114)
.+||.|.+.+|...++.|++..-.||+||+++|||+|+|.|.+||+|.
T Consensus 492 --------------------------------~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYq 539 (731)
T KOG0347|consen 492 --------------------------------PLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQ 539 (731)
T ss_pred --------------------------------hhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEee
Confidence 349999999999999999999999999999999999999999999944
Q ss_pred eeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcHHHHHHhhcC--------CCcccchhhHhhHHH--H
Q 000129 847 QIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQ--------QLPIESQFVSKLADQ--L 916 (2114)
Q Consensus 847 ~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~~ll~~--------~~pies~l~~~l~d~--l 916 (2114)
.|- +..-|+||.||+.|++ ..|..+++|.+.+...|.++... -+||+..++..+.+. |
T Consensus 540 VPr----------tseiYVHRSGRTARA~--~~Gvsvml~~P~e~~~~~KL~ktL~k~~dlpifPv~~~~m~~lkeRvrL 607 (731)
T KOG0347|consen 540 VPR----------TSEIYVHRSGRTARAN--SEGVSVMLCGPQEVGPLKKLCKTLKKKEDLPIFPVETDIMDALKERVRL 607 (731)
T ss_pred cCC----------ccceeEeccccccccc--CCCeEEEEeChHHhHHHHHHHHHHhhccCCCceeccHHHHHHHHHHHHH
Confidence 443 4445999999999987 67999999999998888775321 258888777766554 4
Q ss_pred HHHHhhcc
Q 000129 917 NAEIVLGT 924 (2114)
Q Consensus 917 ~~ei~~~~ 924 (2114)
..||..-.
T Consensus 608 A~ei~~~e 615 (731)
T KOG0347|consen 608 AREIDKLE 615 (731)
T ss_pred HHHHHHhh
Confidence 44554433
No 80
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.3e-38 Score=346.53 Aligned_cols=341 Identities=18% Similarity=0.279 Sum_probs=264.8
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHH
Q 000129 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (2114)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~ 1404 (2114)
-|+...+..+|. ||..|+|+|.++|+.++.+.+ +++-|..|+|||.+|.+|+++.+... ....++++++|||+||-
T Consensus 91 ~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrd-iLaRaKNGTGKT~a~~IP~Lekid~~--~~~IQ~~ilVPtrelAL 167 (459)
T KOG0326|consen 91 CLKRELLMGIFEKGFEKPSPIQEESIPIALTGRD-ILARAKNGTGKTAAYCIPVLEKIDPK--KNVIQAIILVPTRELAL 167 (459)
T ss_pred hhhHHHHHHHHHhccCCCCCccccccceeecchh-hhhhccCCCCCccceechhhhhcCcc--ccceeEEEEeecchhhH
Confidence 456677888887 899999999999999998666 99999999999999999999998773 33469999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcCCcccchh---hccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC-CC
Q 000129 1405 ERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QG 1480 (2114)
Q Consensus 1405 q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~-~~ 1480 (2114)
|+.+..+ .+++.+|++|...+|+++.... .-...+++|+||+++..+..+ .-..+++..++|+||||.+.+ +.
T Consensus 168 QtSqvc~-~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~K--gVa~ls~c~~lV~DEADKlLs~~F 244 (459)
T KOG0326|consen 168 QTSQVCK-ELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKK--GVADLSDCVILVMDEADKLLSVDF 244 (459)
T ss_pred HHHHHHH-HHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhc--ccccchhceEEEechhhhhhchhh
Confidence 9999887 7888899999999999886533 333449999999999988876 344688999999999998876 45
Q ss_pred CchHHHHHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhcCC--CCceeecCCCCCccCcEEEEecccccchHHHHHh
Q 000129 1481 GPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGAT--SHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQA 1558 (2114)
Q Consensus 1481 g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~--~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~ 1558 (2114)
++.++.+++ .+++..|++++|||.|.. +..|+... ....+|...+..+.-+..++..... ...
T Consensus 245 ~~~~e~li~-------~lP~~rQillySATFP~t--Vk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e---~qK--- 309 (459)
T KOG0326|consen 245 QPIVEKLIS-------FLPKERQILLYSATFPLT--VKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEE---RQK--- 309 (459)
T ss_pred hhHHHHHHH-------hCCccceeeEEecccchh--HHHHHHHhccCcceeehhhhhhhcchhhheeeech---hhh---
Confidence 555555543 458899999999999874 33333221 1123333332222222211111100 000
Q ss_pred cCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEe
Q 000129 1559 MTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGY 1638 (2114)
Q Consensus 1559 ~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~ 1638 (2114)
-...+.+... ..-.++||||||...++.+|+.+.+ +++.+.+
T Consensus 310 --vhCLntLfsk-LqINQsIIFCNS~~rVELLAkKITe-----------------------------------lGyscyy 351 (459)
T KOG0326|consen 310 --VHCLNTLFSK-LQINQSIIFCNSTNRVELLAKKITE-----------------------------------LGYSCYY 351 (459)
T ss_pred --hhhHHHHHHH-hcccceEEEeccchHhHHHHHHHHh-----------------------------------ccchhhH
Confidence 0112223333 2457899999999999999977733 5667889
Q ss_pred ecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCc
Q 000129 1639 LHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNS 1718 (2114)
Q Consensus 1639 ~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~ 1718 (2114)
.|+.|-+++|.+|+..|++|..+.||||+.+.||+|+++++||| ++++|.+...|+||+||+||- +..
T Consensus 352 iHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVI----------NFDfpk~aEtYLHRIGRsGRF--Ghl 419 (459)
T KOG0326|consen 352 IHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVI----------NFDFPKNAETYLHRIGRSGRF--GHL 419 (459)
T ss_pred HHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEE----------ecCCCCCHHHHHHHccCCccC--CCc
Confidence 99999999999999999999999999999999999999999999 999999999999999999995 899
Q ss_pred eEEEEEeecCcHHHHHHHH
Q 000129 1719 GKCVILCHAPRKEYYKKFL 1737 (2114)
Q Consensus 1719 G~~iil~~~~~~~~~~~~l 1737 (2114)
|.|+-+++-.++..+.++.
T Consensus 420 GlAInLityedrf~L~~IE 438 (459)
T KOG0326|consen 420 GLAINLITYEDRFNLYRIE 438 (459)
T ss_pred ceEEEEEehhhhhhHHHHH
Confidence 9999998877765554444
No 81
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=7.9e-37 Score=400.11 Aligned_cols=334 Identities=18% Similarity=0.264 Sum_probs=244.9
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHH
Q 000129 1330 PLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409 (2114)
Q Consensus 1330 ~~~~~l~~gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~ 1409 (2114)
......| |+..|+|+|.++|+.++.+.+ +++++|||+|||+||++|++.. .+ .+|||+|+++|+.++...
T Consensus 450 ~~lk~~F-G~~sFRp~Q~eaI~aiL~GrD-VLVimPTGSGKSLcYQLPAL~~------~G--iTLVISPLiSLmqDQV~~ 519 (1195)
T PLN03137 450 VNNKKVF-GNHSFRPNQREIINATMSGYD-VFVLMPTGGGKSLTYQLPALIC------PG--ITLVISPLVSLIQDQIMN 519 (1195)
T ss_pred HHHHHHc-CCCCCCHHHHHHHHHHHcCCC-EEEEcCCCccHHHHHHHHHHHc------CC--cEEEEeCHHHHHHHHHHH
Confidence 3455555 599999999999999998665 9999999999999999999841 34 899999999999977766
Q ss_pred HHHHhcCCCCcEEEEEcCCcccch-----hhc----cCCcEEEEChhhHH---HHHhhhcccccccceeEEEeccccccc
Q 000129 1410 WEIKFGQGLGMRVVELTGETAMDL-----KLL----EKGQIIISTPEKWD---ALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (2114)
Q Consensus 1410 ~~~~f~~~~g~~v~~l~G~~~~~~-----~~l----~~~~IIV~TPe~l~---~l~r~~~~~~~l~~v~liIiDEaH~l~ 1477 (2114)
+.. .|+.+..+.|+..... +.+ ...+|+|+|||++. .+++..........+.+|||||||++.
T Consensus 520 L~~-----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVS 594 (1195)
T PLN03137 520 LLQ-----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVS 594 (1195)
T ss_pred HHh-----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhh
Confidence 652 3788888988776431 112 34599999999985 234332222223458999999999998
Q ss_pred CCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCC--hhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHH
Q 000129 1478 GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN--AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEAR 1555 (2114)
Q Consensus 1478 ~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n--~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~ 1555 (2114)
+++ ..+..-+.++..+...+ ...++++||||++. ..++...++.....++. ....|| .+...+.... ...
T Consensus 595 qWG-hDFRpdYr~L~~Lr~~f-p~vPilALTATAT~~V~eDI~~~L~l~~~~vfr-~Sf~Rp-NL~y~Vv~k~----kk~ 666 (1195)
T PLN03137 595 QWG-HDFRPDYQGLGILKQKF-PNIPVLALTATATASVKEDVVQALGLVNCVVFR-QSFNRP-NLWYSVVPKT----KKC 666 (1195)
T ss_pred hcc-cchHHHHHHHHHHHHhC-CCCCeEEEEecCCHHHHHHHHHHcCCCCcEEee-cccCcc-ceEEEEeccc----hhH
Confidence 654 44444444444443333 46789999999875 34788888765433322 222233 2322222110 000
Q ss_pred HHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccc
Q 000129 1556 MQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHG 1635 (2114)
Q Consensus 1556 ~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~g 1635 (2114)
. ..+...+... ..+.++||||+|+++|+.++..|.. .+..
T Consensus 667 l----e~L~~~I~~~-~~~esgIIYC~SRke~E~LAe~L~~-----------------------------------~Gik 706 (1195)
T PLN03137 667 L----EDIDKFIKEN-HFDECGIIYCLSRMDCEKVAERLQE-----------------------------------FGHK 706 (1195)
T ss_pred H----HHHHHHHHhc-ccCCCceeEeCchhHHHHHHHHHHH-----------------------------------CCCC
Confidence 0 1111122111 2356799999999999999976632 2456
Q ss_pred eEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCC
Q 000129 1636 VGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLL 1715 (2114)
Q Consensus 1636 V~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~ 1715 (2114)
+.+|||||++++|..+++.|.+|+++|||||++++||||+|++++|| |++.|.++.+|+||+|||||.
T Consensus 707 a~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VI----------HydlPkSiEsYyQriGRAGRD-- 774 (1195)
T PLN03137 707 AAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVI----------HHSLPKSIEGYHQECGRAGRD-- 774 (1195)
T ss_pred eeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEE----------EcCCCCCHHHHHhhhcccCCC--
Confidence 89999999999999999999999999999999999999999999999 999999999999999999998
Q ss_pred CCceEEEEEeecCcHHHHHHHHH
Q 000129 1716 DNSGKCVILCHAPRKEYYKKFLR 1738 (2114)
Q Consensus 1716 ~~~G~~iil~~~~~~~~~~~~lR 1738 (2114)
+..|.|++++...+...++.+++
T Consensus 775 G~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 775 GQRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred CCCceEEEEecHHHHHHHHHHHh
Confidence 67899999998777666666663
No 82
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.3e-37 Score=360.80 Aligned_cols=382 Identities=19% Similarity=0.212 Sum_probs=258.0
Q ss_pred CCCCCCcccccChhHHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc----CCCceE
Q 000129 1317 LDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS----ETGVMR 1392 (2114)
Q Consensus 1317 ldl~p~~~~~L~~~~~~~l~~gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~----~~~~~k 1392 (2114)
+.|.|..++.|.+ .. ++..+|.+|.|+||.+++++| ++|.|+||||||++|++|+++.+.... ...++-
T Consensus 141 LGL~~~lv~~L~~-----~m-~i~~pTsVQkq~IP~lL~grD-~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ 213 (708)
T KOG0348|consen 141 LGLHPHLVSHLNT-----KM-KISAPTSVQKQAIPVLLEGRD-ALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPY 213 (708)
T ss_pred cCCCHHHHHHHHH-----Hh-ccCccchHhhcchhhhhcCcc-eEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCce
Confidence 4455555444432 32 499999999999999999777 999999999999999999999998752 223568
Q ss_pred EEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccc--hhhccCC-cEEEEChhhHHHHHhhhcccccccceeEEE
Q 000129 1393 AVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD--LKLLEKG-QIIISTPEKWDALSRRWKQRKYVQQVSLFI 1469 (2114)
Q Consensus 1393 ~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~--~~~l~~~-~IIV~TPe~l~~l~r~~~~~~~l~~v~liI 1469 (2114)
+|||+||||||.|+|+.+.+.+....-+--+.+.|+.... ...++++ +|+|+||+++...+.+-+ ...+++++++|
T Consensus 214 ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~-~i~~s~LRwlV 292 (708)
T KOG0348|consen 214 ALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTK-SIKFSRLRWLV 292 (708)
T ss_pred EEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccc-hheeeeeeEEE
Confidence 9999999999999999999766665555556666665433 2344444 999999999988887643 33578899999
Q ss_pred ecccccccCC-CCchHHHHHHHHHHHHhh------cCCCceEEEEcccCCCh-hHHHHHhcCCCCceeecCC--------
Q 000129 1470 IDELHLIGGQ-GGPVLEVIVSRMRYIASQ------VENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPP-------- 1533 (2114)
Q Consensus 1470 iDEaH~l~~~-~g~~le~i~srl~~i~~~------~~~~~riV~lSATl~n~-~dla~wl~~~~~~~~~f~~-------- 1533 (2114)
+||+|.|.+- .+..+..++.-+..+... ++...+-+++|||+.+. .+++..--..+. ++....
T Consensus 293 lDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv-~I~ld~s~~~~~p~ 371 (708)
T KOG0348|consen 293 LDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPV-YISLDKSHSQLNPK 371 (708)
T ss_pred ecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCce-eeeccchhhhcCcc
Confidence 9999999875 366677777666433221 22347789999999753 244432211111 111000
Q ss_pred -----CCCccCcEEEEecccccch-HH---------HHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhh
Q 000129 1534 -----GVRPVPLEIHIQGVDITNF-EA---------RMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYS 1598 (2114)
Q Consensus 1534 -----~~rpv~l~~~~~~~~~~~~-~~---------~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~ 1598 (2114)
.+.+.|-.-.+..+..+.. .. ++.++.. .+...... ....++|||+++...++.-+..+....
T Consensus 372 ~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa-~L~~~~k~-~~~qk~iVF~S~~d~VeFHy~lf~~~l 449 (708)
T KOG0348|consen 372 DKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAA-LLLNKVKF-EEKQKMIVFFSCSDSVEFHYSLFSEAL 449 (708)
T ss_pred hhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHH-HHHHHhhh-hhhceeEEEEechhHHHHHHHHHHhhh
Confidence 0001100000001111100 00 1111100 01111111 345579999999999887777665544
Q ss_pred ccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCc
Q 000129 1599 SMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAH 1678 (2114)
Q Consensus 1599 ~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~ 1678 (2114)
........ -....+.+ ..-.+...+.-+||+|++++|..+++.|....-.||+||++++||+|+|.+
T Consensus 450 ~~~~e~~s--~~~~s~g~-----------~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V 516 (708)
T KOG0348|consen 450 LSHLEGSS--GAPDSEGL-----------PPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHV 516 (708)
T ss_pred hccccccc--CCcccCCC-----------hhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCc
Confidence 33110000 00001111 112234458889999999999999999999999999999999999999999
Q ss_pred EEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHH
Q 000129 1679 LVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYK 1734 (2114)
Q Consensus 1679 ~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~ 1734 (2114)
.+|| .|+.|.+.++|+||+||+.|. |..|.+++|..+.+.+|..
T Consensus 517 ~~vV----------QYd~P~s~adylHRvGRTARa--G~kG~alLfL~P~Eaey~~ 560 (708)
T KOG0348|consen 517 GLVV----------QYDPPFSTADYLHRVGRTARA--GEKGEALLFLLPSEAEYVN 560 (708)
T ss_pred CeEE----------EeCCCCCHHHHHHHhhhhhhc--cCCCceEEEecccHHHHHH
Confidence 9999 899999999999999999998 6899999999999888544
No 83
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=2.1e-37 Score=374.75 Aligned_cols=367 Identities=26% Similarity=0.440 Sum_probs=285.6
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.+-|+|++++.++ ..+++|+|+|.|.+|||++|+.||...+.. +. |+||..|-++|.+|.|+++...|+.
T Consensus 129 ~LDpFQ~~aI~Ci-dr~eSVLVSAHTSAGKTVVAeYAIA~sLr~---kQ--RVIYTSPIKALSNQKYREl~~EF~D---- 198 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCI-DRGESVLVSAHTSAGKTVVAEYAIAMSLRE---KQ--RVIYTSPIKALSNQKYRELLEEFKD---- 198 (1041)
T ss_pred ccCchHhhhhhhh-cCCceEEEEeecCCCcchHHHHHHHHHHHh---cC--eEEeeChhhhhcchhHHHHHHHhcc----
Confidence 6899999999988 457789999999999999999999998887 45 9999999999999999999999974
Q ss_pred EEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC-CCCchHHHHHHHHHHHHhhcC
Q 000129 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQVE 1499 (2114)
Q Consensus 1421 ~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~-~~g~~le~i~srl~~i~~~~~ 1499 (2114)
|+..|||.+.+ ..+..+|+|.|.|-+++-+ +...++.|.+||+||+|.+-+ +||-+||..+- .++
T Consensus 199 -VGLMTGDVTIn----P~ASCLVMTTEILRsMLYR--GSEvmrEVaWVIFDEIHYMRDkERGVVWEETII-------llP 264 (1041)
T KOG0948|consen 199 -VGLMTGDVTIN----PDASCLVMTTEILRSMLYR--GSEVMREVAWVIFDEIHYMRDKERGVVWEETII-------LLP 264 (1041)
T ss_pred -cceeecceeeC----CCCceeeeHHHHHHHHHhc--cchHhheeeeEEeeeehhccccccceeeeeeEE-------ecc
Confidence 88999999877 4678999999999887765 556789999999999999987 78999987652 247
Q ss_pred CCceEEEEcccCCChhHHHHHhcCC-CCceeecCCCCCccCcEEEEec---------------ccccchHHHHHhcCH--
Q 000129 1500 NKIRIVALSTSLANAKDLGEWIGAT-SHGLFNFPPGVRPVPLEIHIQG---------------VDITNFEARMQAMTK-- 1561 (2114)
Q Consensus 1500 ~~~riV~lSATl~n~~dla~wl~~~-~~~~~~f~~~~rpv~l~~~~~~---------------~~~~~~~~~~~~~~~-- 1561 (2114)
.++|.|+||||+||+.+||+|+..- ...+...-..+||.|++.++.. |...++...+..+.+
T Consensus 265 ~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~ 344 (1041)
T KOG0948|consen 265 DNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAG 344 (1041)
T ss_pred ccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccC
Confidence 8999999999999999999999643 3344555678999999987543 122223332221110
Q ss_pred -------------------------HHHHHHHHHh-cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCccc
Q 000129 1562 -------------------------PTFTAIVQHA-KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEE 1615 (2114)
Q Consensus 1562 -------------------------~~~~~i~~~l-~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~ 1615 (2114)
..+..+...+ ....|+|||+-|+++|+..|..+...-...+..+. .+ .+-
T Consensus 345 ~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~-~V---~~i 420 (1041)
T KOG0948|consen 345 ESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKE-LV---ETI 420 (1041)
T ss_pred CCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHH-HH---HHH
Confidence 2223222211 34579999999999999999888654332222211 00 000
Q ss_pred chhhHhhhhH--------HHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeE
Q 000129 1616 VEPFIDNIQE--------EMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQY 1687 (2114)
Q Consensus 1616 l~~~~~~i~d--------~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~ 1687 (2114)
....+..+.+ +.....+..|||+||+||-+--+..|+-+|.+|-++||+||.+++.|+|.|+.+||+...+.
T Consensus 421 F~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rK 500 (1041)
T KOG0948|consen 421 FNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRK 500 (1041)
T ss_pred HHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccc
Confidence 1111122211 34556788999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHH-HHHHHH
Q 000129 1688 YDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE-YYKKFL 1737 (2114)
Q Consensus 1688 yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~-~~~~~l 1737 (2114)
|||...++ .|--+|+||.|||||.|.|..|.||+|+.+.... ..+.++
T Consensus 501 fDG~~fRw--issGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~ 549 (1041)
T KOG0948|consen 501 FDGKKFRW--ISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDML 549 (1041)
T ss_pred cCCcceee--ecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHh
Confidence 99997654 5778999999999999999999999999987543 333344
No 84
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-37 Score=371.41 Aligned_cols=346 Identities=22% Similarity=0.290 Sum_probs=257.1
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCC--CCcEEEEEc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNH--SNYKIVYVA 557 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~--~~~kil~ia 557 (2114)
+++.+.... .|+..|||+|+-+|+.+..+++ +++|||||||||.+|++|++..+......+..... ..+.+++++
T Consensus 81 l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grd-l~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIla 159 (482)
T KOG0335|consen 81 LGEALAGNIKRSGYTKPTPVQKYSIPIISGGRD-LMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILA 159 (482)
T ss_pred hhHHHhhccccccccCCCcceeeccceeecCCc-eEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEe
Confidence 344444333 6899999999999998877766 99999999999999999999998876442211111 358999999
Q ss_pred ccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChh---hhccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccc
Q 000129 558 PMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIH 633 (2114)
Q Consensus 558 P~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~---~~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH 633 (2114)
|||+||.|++.+.++.....++++...+|+.+...+ ...+++|+|+||+++ |.+.++. ..+++++++|+|||+
T Consensus 160 pTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~---i~l~~~k~~vLDEAD 236 (482)
T KOG0335|consen 160 PTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGK---ISLDNCKFLVLDEAD 236 (482)
T ss_pred CcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcce---eehhhCcEEEecchH
Confidence 999999999999999888888999999999665443 346899999999998 6666554 567889999999999
Q ss_pred cccc--CCchhHHHHHHHHHHHHhhccccccEEEEccccCCh--HHHHHHHhccccCceEeecCC--cccccceeEEEee
Q 000129 634 LLHD--NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY--EDVALFLRVNLEKGLFYFDNS--YRPVPLSQQYIGI 707 (2114)
Q Consensus 634 ~l~d--~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~--~dva~~l~~~~~~~~~~f~~~--~rpv~l~~~~~~~ 707 (2114)
.|.| .|+|.++.|+.++-. ......|.+++|||.|.. ...+.|+..+ .++.-... -.+..+.+.+..+
T Consensus 237 rMlD~mgF~p~Ir~iv~~~~~---~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~---yi~laV~rvg~~~~ni~q~i~~V 310 (482)
T KOG0335|consen 237 RMLDEMGFEPQIRKIVEQLGM---PPKNNRQTLLFSATFPKEIQRLAADFLKDN---YIFLAVGRVGSTSENITQKILFV 310 (482)
T ss_pred HhhhhccccccHHHHhcccCC---CCccceeEEEEeccCChhhhhhHHHHhhcc---ceEEEEeeeccccccceeEeeee
Confidence 9999 699999988876511 113467899999999841 1223333321 12211111 1123444555444
Q ss_pred ccCchhHHHHHhhHHHHHHHHHHhC-----CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhc
Q 000129 708 QVKKPLQRFQLMNDLCYEKVVAVAG-----KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTD 782 (2114)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~ 782 (2114)
........ +.+++-... .... ...++|||.|++.+..++..|...+.....
T Consensus 311 ~~~~kr~~---Lldll~~~~-~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~s-------------------- 366 (482)
T KOG0335|consen 311 NEMEKRSK---LLDLLNKDD-GPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKS-------------------- 366 (482)
T ss_pred cchhhHHH---HHHHhhccc-CCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCcee--------------------
Confidence 43322221 111111100 0001 238999999999999999999876655433
Q ss_pred ccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHH
Q 000129 783 MVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPL 862 (2114)
Q Consensus 783 ~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~ 862 (2114)
.||.-++.+|...++.|++|.+.|||||+++|||+|+|+|++||+ ||.+. ...
T Consensus 367 -----------------Ihg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVIn----yDmP~------d~d 419 (482)
T KOG0335|consen 367 -----------------IHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVIN----YDMPA------DID 419 (482)
T ss_pred -----------------ecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEE----eecCc------chh
Confidence 399999999999999999999999999999999999999999999 66554 466
Q ss_pred HHHHhhcccCCCCCCCceEEEEEcCCCc
Q 000129 863 DIMQMLGRAGRPQYDSYGEGIIITGHSE 890 (2114)
Q Consensus 863 ~~~Qr~GRAGR~g~d~~G~~iil~~~~e 890 (2114)
+|+||+||+||.| ..|.++.|++...
T Consensus 420 ~YvHRIGRTGR~G--n~G~atsf~n~~~ 445 (482)
T KOG0335|consen 420 DYVHRIGRTGRVG--NGGRATSFFNEKN 445 (482)
T ss_pred hHHHhccccccCC--CCceeEEEecccc
Confidence 8999999999998 7899999988443
No 85
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.5e-35 Score=394.68 Aligned_cols=422 Identities=18% Similarity=0.222 Sum_probs=285.3
Q ss_pred HHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhc-cCCcEE
Q 000129 503 VYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKV 581 (2114)
Q Consensus 503 ~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~-~~gi~v 581 (2114)
.|-.++.++.++|++||||||||+++.+++++.... +.+++|++|+|++|.|+++++.+.++ ..|..|
T Consensus 9 ~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~-----------~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~V 77 (819)
T TIGR01970 9 ALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGI-----------GGKIIMLEPRRLAARSAAQRLASQLGEAVGQTV 77 (819)
T ss_pred HHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhcc-----------CCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEE
Confidence 344456677889999999999999999999987521 23899999999999999999976554 456677
Q ss_pred EEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccc-ccc-CCchhHHHHHHHHHHHHhhccc
Q 000129 582 RELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL-LHD-NRGPVLESIVARTVRQIETTKE 659 (2114)
Q Consensus 582 ~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~-l~d-~rg~~le~iv~rl~~~~~~~~~ 659 (2114)
+...+..+ .....++|+|+||+.+-.... ....++++++|||||+|. ..+ +.+-. ++..+ ......
T Consensus 78 Gy~vr~~~---~~s~~t~I~v~T~G~Llr~l~---~d~~L~~v~~VIiDEaHER~L~~Dl~L~---ll~~i---~~~lr~ 145 (819)
T TIGR01970 78 GYRVRGEN---KVSRRTRLEVVTEGILTRMIQ---DDPELDGVGALIFDEFHERSLDADLGLA---LALDV---QSSLRE 145 (819)
T ss_pred EEEEcccc---ccCCCCcEEEECCcHHHHHHh---hCcccccCCEEEEeccchhhhccchHHH---HHHHH---HHhcCC
Confidence 66555432 223468999999997632222 235688999999999994 333 33221 11111 122456
Q ss_pred cccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEE
Q 000129 660 HIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIF 739 (2114)
Q Consensus 660 ~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVF 739 (2114)
+.|+|+||||+++ +.+..|++.. ..+...+ +..|+.+.|....... .....+...+.. +... ..+++|||
T Consensus 146 dlqlIlmSATl~~-~~l~~~l~~~---~vI~~~g--r~~pVe~~y~~~~~~~--~~~~~v~~~l~~-~l~~-~~g~iLVF 215 (819)
T TIGR01970 146 DLKILAMSATLDG-ERLSSLLPDA---PVVESEG--RSFPVEIRYLPLRGDQ--RLEDAVSRAVEH-ALAS-ETGSILVF 215 (819)
T ss_pred CceEEEEeCCCCH-HHHHHHcCCC---cEEEecC--cceeeeeEEeecchhh--hHHHHHHHHHHH-HHHh-cCCcEEEE
Confidence 8999999999975 4567777532 2333333 3334555554332211 111112222222 1121 25789999
Q ss_pred ecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCC
Q 000129 740 VHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDG 819 (2114)
Q Consensus 740 v~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g 819 (2114)
|++++++..++..|.+... ....+..+||+|+.++|..+++.|++|
T Consensus 216 lpg~~eI~~l~~~L~~~~~----------------------------------~~~~v~pLHg~L~~~eq~~~~~~~~~G 261 (819)
T TIGR01970 216 LPGQAEIRRVQEQLAERLD----------------------------------SDVLICPLYGELSLAAQDRAIKPDPQG 261 (819)
T ss_pred ECCHHHHHHHHHHHHhhcC----------------------------------CCcEEEEecCCCCHHHHHHHHhhcccC
Confidence 9999999999998875310 012367789999999999999999999
Q ss_pred CceEEEechHhhhhcCCCceEEEEecce----eccCCCCc----cccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcH
Q 000129 820 HVQVLVSTATLAWGVNLPAHTVIIKGTQ----IYNPEKGA----WTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891 (2114)
Q Consensus 820 ~i~VLVaT~tla~GVdlP~v~vVI~~~~----~yd~~~g~----~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~ 891 (2114)
..+|||||+++++|||+|++++||+++. .||+.+|. ..++|..+|.||+|||||. ..|.||.+++..+.
T Consensus 262 ~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~~~ 338 (819)
T TIGR01970 262 RRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEEQH 338 (819)
T ss_pred CeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHHHH
Confidence 9999999999999999999999999764 47877663 2678999999999999997 58999999987654
Q ss_pred HHHHHhhcCCCc--ccchhhHhhHHHHHHHHhhccccChHHHHHHHHhhHHHHhhccCCcccCCCcccccccchhhhhhH
Q 000129 892 RYYLSLMNQQLP--IESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRA 969 (2114)
Q Consensus 892 ~~~~~ll~~~~p--ies~l~~~l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~ 969 (2114)
..+. ....| ..+.+ ...+..-...| +. +|..+ +.++.+..
T Consensus 339 ~~l~---~~~~PEI~r~~L----~~~~L~l~~~g-~~--------------------~~~~~----------~~l~~P~~ 380 (819)
T TIGR01970 339 QRLP---AQDEPEILQADL----SGLALELAQWG-AK--------------------DPSDL----------RWLDAPPS 380 (819)
T ss_pred Hhhh---cCCCcceeccCc----HHHHHHHHHcC-CC--------------------ChhhC----------CCCCCcCH
Confidence 3322 22222 11222 11111111111 11 11111 11222333
Q ss_pred HHHHHHHHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHHHHhhcCCCCCHHHHHHHhhCCcc
Q 000129 970 DLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEE 1038 (2114)
Q Consensus 970 ~li~~al~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~i~s~s~e 1038 (2114)
..+..|+..|...|+|+.+ | .+|++|+.||.++++|...+++..+...+|. .+.+.|.|+-+|
T Consensus 381 ~~i~~a~~~L~~lgald~~---~--~lT~~G~~~~~lp~~p~l~~~ll~~~~~~~~-~~~~~iaa~ls~ 443 (819)
T TIGR01970 381 VALAAARQLLQRLGALDAQ---G--RLTAHGKAMAALGCHPRLAAMLLSAHSTGLA-ALACDLAALLEE 443 (819)
T ss_pred HHHHHHHHHHHHCCCCCCC---C--CcCHHHHHHHhcCCCHHHHHHHHHhhhcCCH-HHHHHHHHHHcC
Confidence 5688999999999999743 3 6899999999999999999999987665554 456666565444
No 86
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=2.3e-35 Score=390.23 Aligned_cols=334 Identities=20% Similarity=0.298 Sum_probs=242.3
Q ss_pred ccCCCChhhHhhcCCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc
Q 000129 478 KISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA 557 (2114)
Q Consensus 478 ~i~~lp~~~~~~f~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~ia 557 (2114)
+...++..+.....||.+|+|+|.++++.++.+. +++++||||||||++|++|++.. . ..+|||+
T Consensus 8 ~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~-dvlv~apTGsGKTl~y~lpal~~---~-----------g~tlVis 72 (607)
T PRK11057 8 NLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGR-DCLVVMPTGGGKSLCYQIPALVL---D-----------GLTLVVS 72 (607)
T ss_pred CchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCC-CEEEEcCCCchHHHHHHHHHHHc---C-----------CCEEEEe
Confidence 3344443333333699999999999999988775 59999999999999999998853 1 1689999
Q ss_pred ccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh-------hccceEEEcCHhHHH--HHHhccCCCcccccccEEE
Q 000129 558 PMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWD--IITRKSGDRTYTQLVKLLI 628 (2114)
Q Consensus 558 P~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPek~d--~l~r~~~~~~~l~~v~liI 628 (2114)
|+++|+.|++..+... |+.+..+.++....... ....+++++|||++. .+... ....++++||
T Consensus 73 Pl~sL~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~----l~~~~l~~iV 144 (607)
T PRK11057 73 PLISLMKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEH----LAHWNPALLA 144 (607)
T ss_pred cHHHHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHH----HhhCCCCEEE
Confidence 9999999999988763 78888777765543221 235789999999962 22222 2234689999
Q ss_pred Eeccccccc---CCchhHHHHHHHHHHHHhhccccccEEEEccccCCh--HHHHHHHhccccCceEeecCCcccccceeE
Q 000129 629 IDEIHLLHD---NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY--EDVALFLRVNLEKGLFYFDNSYRPVPLSQQ 703 (2114)
Q Consensus 629 iDEaH~l~d---~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~--~dva~~l~~~~~~~~~~f~~~~rpv~l~~~ 703 (2114)
|||||++.+ .+.+.+..+ ..+ ....+.++++++|||+++. .++..+++.. .+........||. +.
T Consensus 145 IDEaH~i~~~G~~fr~~y~~L-~~l----~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~--~~~~~~~~~~r~n-l~-- 214 (607)
T PRK11057 145 VDEAHCISQWGHDFRPEYAAL-GQL----RQRFPTLPFMALTATADDTTRQDIVRLLGLN--DPLIQISSFDRPN-IR-- 214 (607)
T ss_pred EeCccccccccCcccHHHHHH-HHH----HHhCCCCcEEEEecCCChhHHHHHHHHhCCC--CeEEEECCCCCCc-ce--
Confidence 999999875 345554432 222 2234678999999998863 3455555432 3333333333432 21
Q ss_pred EEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcc
Q 000129 704 YIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDM 783 (2114)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~ 783 (2114)
+....... .... +...+ ....++++||||+|++.|+.++..|...+
T Consensus 215 ~~v~~~~~---~~~~----l~~~l-~~~~~~~~IIFc~tr~~~e~la~~L~~~g-------------------------- 260 (607)
T PRK11057 215 YTLVEKFK---PLDQ----LMRYV-QEQRGKSGIIYCNSRAKVEDTAARLQSRG-------------------------- 260 (607)
T ss_pred eeeeeccc---hHHH----HHHHH-HhcCCCCEEEEECcHHHHHHHHHHHHhCC--------------------------
Confidence 11111111 1111 11212 22346799999999999999999987643
Q ss_pred cCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHH
Q 000129 784 VKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLD 863 (2114)
Q Consensus 784 ~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~ 863 (2114)
..++.+||+|+..+|..+++.|++|.++|||||+++++|||+|++++||+ |+++. |..+
T Consensus 261 -----------~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~----~d~P~------s~~~ 319 (607)
T PRK11057 261 -----------ISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVH----FDIPR------NIES 319 (607)
T ss_pred -----------CCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEE----eCCCC------CHHH
Confidence 23678899999999999999999999999999999999999999999999 77665 7889
Q ss_pred HHHhhcccCCCCCCCceEEEEEcCCCcHHHHHHhhcCC
Q 000129 864 IMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQ 901 (2114)
Q Consensus 864 ~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~~ll~~~ 901 (2114)
|+||+|||||.| ..|.|+++++..+...+..++...
T Consensus 320 y~Qr~GRaGR~G--~~~~~ill~~~~d~~~~~~~~~~~ 355 (607)
T PRK11057 320 YYQETGRAGRDG--LPAEAMLFYDPADMAWLRRCLEEK 355 (607)
T ss_pred HHHHhhhccCCC--CCceEEEEeCHHHHHHHHHHHhcC
Confidence 999999999998 569999999998888887776543
No 87
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-35 Score=335.86 Aligned_cols=341 Identities=19% Similarity=0.266 Sum_probs=259.9
Q ss_pred ChhhHhhc-CCCCCCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccH
Q 000129 483 PEWAQPAF-KGMTQLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMK 560 (2114)
Q Consensus 483 p~~~~~~f-~g~~~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~r 560 (2114)
|+.++..+ .+|..|+.||..++|.++.. ..|+|.++..|+|||.+|.|+||..+... ...+++++|+|+|
T Consensus 99 Pellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~--------~~~PQ~iCLaPtr 170 (477)
T KOG0332|consen 99 PELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD--------VVVPQCICLAPTR 170 (477)
T ss_pred HHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc--------ccCCCceeeCchH
Confidence 55566655 78999999999999998876 46999999999999999999999887543 2346899999999
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHH-HHHHhccCCCcccccccEEEEecccccccCC
Q 000129 561 ALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHDNR 639 (2114)
Q Consensus 561 aLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l~d~r 639 (2114)
+||.|+.+.+.+..+..++++....-+....+...-..+|+|+||+.+ |...+... ..++.++.+|+|||+.+.+.+
T Consensus 171 ELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~--id~~kikvfVlDEAD~Mi~tq 248 (477)
T KOG0332|consen 171 ELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKC--IDLEKIKVFVLDEADVMIDTQ 248 (477)
T ss_pred HHHHHHHHHHHHhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHHh--hChhhceEEEecchhhhhhcc
Confidence 999999999999888778888877777655554445679999999997 55554221 457889999999999998855
Q ss_pred chhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhcccc--CceEeecCCcccccceeEEEeeccCchhHHHH
Q 000129 640 GPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLE--KGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQ 717 (2114)
Q Consensus 640 g~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~--~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~ 717 (2114)
|-.=.+ .+.....+++.|++++|||.. +.++.|...-.. +.++.-.....--++.+.++. +.....+++
T Consensus 249 G~~D~S-----~rI~~~lP~~~QllLFSATf~--e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~--C~~~~~K~~ 319 (477)
T KOG0332|consen 249 GFQDQS-----IRIMRSLPRNQQLLLFSATFV--EKVAAFALKIVPNANVIILKREELALDNIKQLYVL--CACRDDKYQ 319 (477)
T ss_pred cccccc-----hhhhhhcCCcceEEeeechhH--HHHHHHHHHhcCCCceeeeehhhccccchhhheee--ccchhhHHH
Confidence 432221 222334567999999999975 566666643222 222222233333344444443 333344555
Q ss_pred HhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCce
Q 000129 718 LMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGF 797 (2114)
Q Consensus 718 ~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv 797 (2114)
.+.+ +|. ...-+|.||||+|++.+.+++..++..| +.|
T Consensus 320 ~l~~-lyg----~~tigqsiIFc~tk~ta~~l~~~m~~~G-------------------------------------h~V 357 (477)
T KOG0332|consen 320 ALVN-LYG----LLTIGQSIIFCHTKATAMWLYEEMRAEG-------------------------------------HQV 357 (477)
T ss_pred HHHH-HHh----hhhhhheEEEEeehhhHHHHHHHHHhcC-------------------------------------cee
Confidence 5444 333 2235799999999999999999998765 347
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCC
Q 000129 798 AIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD 877 (2114)
Q Consensus 798 ~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d 877 (2114)
..+||.|..++|..+.+.|+.|.-+|||+|+++|||+|++.+++|||++.|.+. ..+-+...|+||+||+||-|
T Consensus 358 ~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~----~~~pD~etYlHRiGRtGRFG-- 431 (477)
T KOG0332|consen 358 SLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKY----TGEPDYETYLHRIGRTGRFG-- 431 (477)
T ss_pred EEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCcccc----CCCCCHHHHHHHhccccccc--
Confidence 788999999999999999999999999999999999999999999995555443 34468999999999999965
Q ss_pred CceEEEEEcCCCc
Q 000129 878 SYGEGIIITGHSE 890 (2114)
Q Consensus 878 ~~G~~iil~~~~e 890 (2114)
+.|.+|-+.+..+
T Consensus 432 kkG~a~n~v~~~~ 444 (477)
T KOG0332|consen 432 KKGLAINLVDDKD 444 (477)
T ss_pred ccceEEEeecccC
Confidence 8999999988765
No 88
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=2.5e-35 Score=391.73 Aligned_cols=327 Identities=20% Similarity=0.280 Sum_probs=241.9
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.||.+|+|+|.++++.++.++ +++++||||+|||+||++|++.. . | .++||+|+++|+.|++..+
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~-dvlv~~PTG~GKTl~y~lpal~~---~----g-------~~lVisPl~sL~~dq~~~l 73 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGR-DVLVVMPTGGGKSLCYQVPALLL---K----G-------LTVVISPLISLMKDQVDQL 73 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCC-CEEEEcCCCccHhHHHHHHHHHc---C----C-------cEEEEcCCHHHHHHHHHHH
Confidence 489999999999999999876 59999999999999999998742 1 1 5899999999999999988
Q ss_pred HHhhccCCcEEEEEeCCCccChhh-------hccceEEEcCHhHH--HHHHhccCCCcccccccEEEEecccccccCCch
Q 000129 571 SNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKW--DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGP 641 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPek~--d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~ 641 (2114)
... |+.+..++|+.+..... ....+|+++|||++ ..+.+. ....++++|||||||++.+ .|.
T Consensus 74 ~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~----l~~~~l~~iViDEaH~i~~-~g~ 144 (591)
T TIGR01389 74 RAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNM----LQRIPIALVAVDEAHCVSQ-WGH 144 (591)
T ss_pred HHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHH----HhcCCCCEEEEeCCccccc-ccC
Confidence 763 78899998887654321 24679999999987 222222 2345789999999999864 333
Q ss_pred hHHHHHHHHHHHHhhccccccEEEEccccCC--hHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHh
Q 000129 642 VLESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLM 719 (2114)
Q Consensus 642 ~le~iv~rl~~~~~~~~~~~riv~lSATlpn--~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~ 719 (2114)
.++..+.++...... .+..+++++|||.+. ..++..+++... +..++.+..|| .+..... .... ...
T Consensus 145 ~frp~y~~l~~l~~~-~~~~~vi~lTAT~~~~~~~~i~~~l~~~~--~~~~~~~~~r~-nl~~~v~--~~~~---~~~-- 213 (591)
T TIGR01389 145 DFRPEYQRLGSLAER-FPQVPRIALTATADAETRQDIRELLRLAD--ANEFITSFDRP-NLRFSVV--KKNN---KQK-- 213 (591)
T ss_pred ccHHHHHHHHHHHHh-CCCCCEEEEEeCCCHHHHHHHHHHcCCCC--CCeEecCCCCC-CcEEEEE--eCCC---HHH--
Confidence 333333333322222 345569999999874 356777776542 22233333333 2221111 1111 111
Q ss_pred hHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEE
Q 000129 720 NDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAI 799 (2114)
Q Consensus 720 ~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~ 799 (2114)
.+.+.+.. ..+.++||||+|++.|+.++..|...+ ..++.
T Consensus 214 --~l~~~l~~-~~~~~~IIf~~sr~~~e~la~~L~~~g-------------------------------------~~~~~ 253 (591)
T TIGR01389 214 --FLLDYLKK-HRGQSGIIYASSRKKVEELAERLESQG-------------------------------------ISALA 253 (591)
T ss_pred --HHHHHHHh-cCCCCEEEEECcHHHHHHHHHHHHhCC-------------------------------------CCEEE
Confidence 12222222 236789999999999999999887533 23678
Q ss_pred ecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCc
Q 000129 800 HHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSY 879 (2114)
Q Consensus 800 hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~ 879 (2114)
+||+|+.++|..+++.|.+|.++|||||+++++|||+|++++||+ |+++. |..+|+||+|||||.| ..
T Consensus 254 ~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~----~~~p~------s~~~y~Q~~GRaGR~G--~~ 321 (591)
T TIGR01389 254 YHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIH----YDMPG------NLESYYQEAGRAGRDG--LP 321 (591)
T ss_pred EECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEE----cCCCC------CHHHHhhhhccccCCC--CC
Confidence 899999999999999999999999999999999999999999999 77765 7889999999999987 67
Q ss_pred eEEEEEcCCCcHHHHHHhhcCCCcc
Q 000129 880 GEGIIITGHSELRYYLSLMNQQLPI 904 (2114)
Q Consensus 880 G~~iil~~~~e~~~~~~ll~~~~pi 904 (2114)
|.|+++++..+...+..++....|-
T Consensus 322 ~~~il~~~~~d~~~~~~~i~~~~~~ 346 (591)
T TIGR01389 322 AEAILLYSPADIALLKRRIEQSEAD 346 (591)
T ss_pred ceEEEecCHHHHHHHHHHHhccCCc
Confidence 8999999999988888887765553
No 89
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=5.4e-35 Score=390.70 Aligned_cols=412 Identities=18% Similarity=0.196 Sum_probs=279.0
Q ss_pred HHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhc-cCCcEE
Q 000129 503 VYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKV 581 (2114)
Q Consensus 503 ~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~-~~gi~v 581 (2114)
-|-.++.++.+++++||||||||+++.++++..... +.++++++|+|++|.|+++++.+.++ ..|..|
T Consensus 12 ~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~-----------~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~V 80 (812)
T PRK11664 12 ELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI-----------NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETV 80 (812)
T ss_pred HHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc-----------CCeEEEECChHHHHHHHHHHHHHHhCcccCceE
Confidence 344455667789999999999999999999875321 13899999999999999999976554 467788
Q ss_pred EEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccc
Q 000129 582 RELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHI 661 (2114)
Q Consensus 582 ~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~ 661 (2114)
+..++..+.. ...++|+|+||+++..+... ...++++++|||||+|.. +...+.++.-+.......+++.
T Consensus 81 Gy~vr~~~~~---~~~t~I~v~T~G~Llr~l~~---d~~L~~v~~IIlDEaHER----~l~~Dl~L~ll~~i~~~lr~~l 150 (812)
T PRK11664 81 GYRMRAESKV---GPNTRLEVVTEGILTRMIQR---DPELSGVGLVILDEFHER----SLQADLALALLLDVQQGLRDDL 150 (812)
T ss_pred EEEecCcccc---CCCCcEEEEChhHHHHHHhh---CCCcCcCcEEEEcCCCcc----ccccchHHHHHHHHHHhCCccc
Confidence 8777654322 23578999999986333332 256899999999999962 1111111221222223346789
Q ss_pred cEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEec
Q 000129 662 RLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVH 741 (2114)
Q Consensus 662 riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~ 741 (2114)
|+|+||||++. +.+..|+.. ...+.... +..|+.++|........ ....+...+...+ . ...+++||||+
T Consensus 151 qlilmSATl~~-~~l~~~~~~---~~~I~~~g--r~~pV~~~y~~~~~~~~--~~~~v~~~l~~~l-~-~~~g~iLVFlp 220 (812)
T PRK11664 151 KLLIMSATLDN-DRLQQLLPD---APVIVSEG--RSFPVERRYQPLPAHQR--FDEAVARATAELL-R-QESGSLLLFLP 220 (812)
T ss_pred eEEEEecCCCH-HHHHHhcCC---CCEEEecC--ccccceEEeccCchhhh--HHHHHHHHHHHHH-H-hCCCCEEEEcC
Confidence 99999999975 456777642 22333222 34455555553322111 1111111222211 1 12679999999
Q ss_pred ChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCc
Q 000129 742 SRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV 821 (2114)
Q Consensus 742 sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i 821 (2114)
+++++..++..|...... ...+..+||+|+..+|..+++.|++|..
T Consensus 221 g~~ei~~l~~~L~~~~~~----------------------------------~~~v~~Lhg~l~~~eq~~~~~~~~~G~r 266 (812)
T PRK11664 221 GVGEIQRVQEQLASRVAS----------------------------------DVLLCPLYGALSLAEQQKAILPAPAGRR 266 (812)
T ss_pred CHHHHHHHHHHHHHhccC----------------------------------CceEEEeeCCCCHHHHHHHhccccCCCe
Confidence 999999999998752100 1236678999999999999999999999
Q ss_pred eEEEechHhhhhcCCCceEEEEecce----eccCCCCcc----ccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcHHH
Q 000129 822 QVLVSTATLAWGVNLPAHTVIIKGTQ----IYNPEKGAW----TELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRY 893 (2114)
Q Consensus 822 ~VLVaT~tla~GVdlP~v~vVI~~~~----~yd~~~g~~----~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~ 893 (2114)
+|||||+++++|||+|++++||++.. .||+.+|.. ..+|..+|.||+|||||. ..|.||.+++..+..
T Consensus 267 kVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~~~- 342 (812)
T PRK11664 267 KVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQAE- 342 (812)
T ss_pred EEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHHHh-
Confidence 99999999999999999999999754 488887743 568999999999999997 489999999976533
Q ss_pred HHHhhcCCCcccchhhHhhHHHHHHHHhhccccChHHHHHHHHhhHHHHhhccCCcccCCCcccccccchhhhhhHHHHH
Q 000129 894 YLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVH 973 (2114)
Q Consensus 894 ~~~ll~~~~pies~l~~~l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~ 973 (2114)
.+.....| |- +...|...+......| +.+..+ + +.++.+....+.
T Consensus 343 --~l~~~~~P-EI-~r~dL~~~~L~l~~~g-~~~~~~-~-----------------------------~~ld~P~~~~~~ 387 (812)
T PRK11664 343 --RAAAQSEP-EI-LHSDLSGLLLELLQWG-CHDPAQ-L-----------------------------SWLDQPPAAALA 387 (812)
T ss_pred --hCccCCCC-ce-eccchHHHHHHHHHcC-CCCHHh-C-----------------------------CCCCCCCHHHHH
Confidence 33222233 11 1122222222111122 111110 0 112223345689
Q ss_pred HHHHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHHHHhhcCCC
Q 000129 974 TAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPT 1023 (2114)
Q Consensus 974 ~al~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~ 1023 (2114)
.|+..|...|+|+.+ ..+|++|+.||.++++|...++++.+...+
T Consensus 388 ~A~~~L~~lgald~~-----g~lT~~G~~m~~lp~~Prla~~ll~a~~~~ 432 (812)
T PRK11664 388 AAKRLLQQLGALDGQ-----GRLTARGRKMAALGNDPRLAAMLVAAKEDD 432 (812)
T ss_pred HHHHHHHHCCCCCCC-----CCcCHHHHHHHhcCCchHHHHHHHHHHhcC
Confidence 999999999999733 378999999999999999999998765443
No 90
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.4e-34 Score=385.40 Aligned_cols=390 Identities=16% Similarity=0.179 Sum_probs=274.8
Q ss_pred HcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccch
Q 000129 1354 YNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL 1433 (2114)
Q Consensus 1354 l~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~ 1433 (2114)
+.++++++++||||||||+++.+++++.... ++ +++|++|+|++|.|+++++.+.++...|..|+...+...
T Consensus 14 l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~---~~--~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~--- 85 (819)
T TIGR01970 14 LAAHPQVVLEAPPGAGKSTAVPLALLDAPGI---GG--KIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN--- 85 (819)
T ss_pred HHcCCcEEEECCCCCCHHHHHHHHHHHhhcc---CC--eEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc---
Confidence 3557789999999999999999999987632 34 999999999999999999987887767778876655432
Q ss_pred hhccCCcEEEEChhhHHHHHhhhcccccccceeEEEeccccc-ccC-CCCchHHHHHHHHHHHHhhcCCCceEEEEcccC
Q 000129 1434 KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHL-IGG-QGGPVLEVIVSRMRYIASQVENKIRIVALSTSL 1511 (2114)
Q Consensus 1434 ~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~-l~~-~~g~~le~i~srl~~i~~~~~~~~riV~lSATl 1511 (2114)
..-.+++|+|+||+++..++.. ...++++++|||||+|. ..+ +. .+..++.+...++.+.|+|+||||+
T Consensus 86 ~~s~~t~I~v~T~G~Llr~l~~---d~~L~~v~~VIiDEaHER~L~~Dl------~L~ll~~i~~~lr~dlqlIlmSATl 156 (819)
T TIGR01970 86 KVSRRTRLEVVTEGILTRMIQD---DPELDGVGALIFDEFHERSLDADL------GLALALDVQSSLREDLKILAMSATL 156 (819)
T ss_pred ccCCCCcEEEECCcHHHHHHhh---CcccccCCEEEEeccchhhhccch------HHHHHHHHHHhcCCCceEEEEeCCC
Confidence 2224569999999998776654 46799999999999994 332 22 2222333434456789999999999
Q ss_pred CChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHh-cCCCCEEEEeCChHHHHHH
Q 000129 1512 ANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHA-KNEKPALVFVPSRKYVRLT 1590 (2114)
Q Consensus 1512 ~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~~~LVFv~sr~~a~~l 1590 (2114)
+. ..+.++++..+ ++.. ..+..|+++++........ +. ......+...+ ...+++|||||++++++.+
T Consensus 157 ~~-~~l~~~l~~~~--vI~~--~gr~~pVe~~y~~~~~~~~---~~---~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l 225 (819)
T TIGR01970 157 DG-ERLSSLLPDAP--VVES--EGRSFPVEIRYLPLRGDQR---LE---DAVSRAVEHALASETGSILVFLPGQAEIRRV 225 (819)
T ss_pred CH-HHHHHHcCCCc--EEEe--cCcceeeeeEEeecchhhh---HH---HHHHHHHHHHHHhcCCcEEEEECCHHHHHHH
Confidence 64 45788886432 3332 2344555555433221111 10 00111122211 2368899999999999999
Q ss_pred HHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccc
Q 000129 1591 AVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMC 1670 (2114)
Q Consensus 1591 a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la 1670 (2114)
+..|..... .+..|..+||+|++++|..+++.|++|..+|||||++++
T Consensus 226 ~~~L~~~~~--------------------------------~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAE 273 (819)
T TIGR01970 226 QEQLAERLD--------------------------------SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAE 273 (819)
T ss_pred HHHHHhhcC--------------------------------CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHh
Confidence 877743110 123588999999999999999999999999999999999
Q ss_pred cccCCCCcEEEEE-e---eeEecCCcCc----CCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHHHHHHhccC
Q 000129 1671 WGVPLTAHLVVVM-G---TQYYDGQENA----HTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLRLTQN 1742 (2114)
Q Consensus 1671 ~Gvdip~~~vVI~-g---t~~yd~~~~~----~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~~~lRl~~n 1742 (2114)
+|||+|++.+||- | ...||...+. ..++|.+++.||+|||||. .+|.||.++++.+...+.. ...
T Consensus 274 rgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~~~~~l~~----~~~ 346 (819)
T TIGR01970 274 TSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEEQHQRLPA----QDE 346 (819)
T ss_pred hcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHHHHHhhhc----CCC
Confidence 9999999999992 2 2356655332 3467899999999999995 7999999998754333222 222
Q ss_pred CCCc--------------cccCC-CccchHHHHHHHHHHHHHHHHHCCCceecCCCccccCcccchhhhcccCHhHHHHH
Q 000129 1743 PNYY--------------NLQGV-SHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERF 1807 (2114)
Q Consensus 1743 P~~y--------------~l~~~-s~~~l~~~lselve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~i~~~T~~~f 1807 (2114)
|... ++.+. ...-++....+.++.++..|...|+|+.+ -..|++|+.++.++++|...+++
T Consensus 347 PEI~r~~L~~~~L~l~~~g~~~~~~~~~l~~P~~~~i~~a~~~L~~lgald~~----~~lT~~G~~~~~lp~~p~l~~~l 422 (819)
T TIGR01970 347 PEILQADLSGLALELAQWGAKDPSDLRWLDAPPSVALAAARQLLQRLGALDAQ----GRLTAHGKAMAALGCHPRLAAML 422 (819)
T ss_pred cceeccCcHHHHHHHHHcCCCChhhCCCCCCcCHHHHHHHHHHHHHCCCCCCC----CCcCHHHHHHHhcCCCHHHHHHH
Confidence 3222 11110 00111222346789999999999999532 25799999999999999999999
Q ss_pred HhhcCCC
Q 000129 1808 SSSLTPK 1814 (2114)
Q Consensus 1808 ~~sl~~~ 1814 (2114)
+.+....
T Consensus 423 l~~~~~~ 429 (819)
T TIGR01970 423 LSAHSTG 429 (819)
T ss_pred HHhhhcC
Confidence 8764433
No 91
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.8e-35 Score=385.78 Aligned_cols=358 Identities=28% Similarity=0.429 Sum_probs=282.8
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.+-++|++++..+-. +++|+||||||||||++++.|+...+.. +. +++|++|.+||.+|.++++..+|++. .-
T Consensus 119 ~LD~fQ~~a~~~Ler-~esVlV~ApTssGKTvVaeyAi~~al~~---~q--rviYTsPIKALsNQKyrdl~~~fgdv-~~ 191 (1041)
T COG4581 119 ELDPFQQEAIAILER-GESVLVCAPTSSGKTVVAEYAIALALRD---GQ--RVIYTSPIKALSNQKYRDLLAKFGDV-AD 191 (1041)
T ss_pred CcCHHHHHHHHHHhC-CCcEEEEccCCCCcchHHHHHHHHHHHc---CC--ceEeccchhhhhhhHHHHHHHHhhhh-hh
Confidence 689999999988855 6779999999999999999999988877 45 79999999999999999999999864 33
Q ss_pred EEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC-CCCchHHHHHHHHHHHHhhcC
Q 000129 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQVE 1499 (2114)
Q Consensus 1421 ~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~-~~g~~le~i~srl~~i~~~~~ 1499 (2114)
.++.+|||.+.+ ..+.++|+|.|.+-+++.+ ....+..+..||+||+|.+++ ++|.++|.++- .++
T Consensus 192 ~vGL~TGDv~IN----~~A~clvMTTEILRnMlyr--g~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii-------~lP 258 (1041)
T COG4581 192 MVGLMTGDVSIN----PDAPCLVMTTEILRNMLYR--GSESLRDIEWVVFDEVHYIGDRERGVVWEEVII-------LLP 258 (1041)
T ss_pred hccceecceeeC----CCCceEEeeHHHHHHHhcc--CcccccccceEEEEeeeeccccccchhHHHHHH-------hcC
Confidence 478999998877 5678999999999888877 456789999999999999998 68999999874 247
Q ss_pred CCceEEEEcccCCChhHHHHHhcCCC-CceeecCCCCCccCcEEEEeccc-------c------cchHHHHHhcC-----
Q 000129 1500 NKIRIVALSTSLANAKDLGEWIGATS-HGLFNFPPGVRPVPLEIHIQGVD-------I------TNFEARMQAMT----- 1560 (2114)
Q Consensus 1500 ~~~riV~lSATl~n~~dla~wl~~~~-~~~~~f~~~~rpv~l~~~~~~~~-------~------~~~~~~~~~~~----- 1560 (2114)
..+++|+||||++|+.+|++|++... ..++......||+|++.++..-. . ..+........
T Consensus 259 ~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~ 338 (1041)
T COG4581 259 DHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEK 338 (1041)
T ss_pred CCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchh
Confidence 78999999999999999999998653 45667788999999998875431 0 11110000000
Q ss_pred ----HH---------------------HHHHHHHHh--cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCc
Q 000129 1561 ----KP---------------------TFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPA 1613 (2114)
Q Consensus 1561 ----~~---------------------~~~~i~~~l--~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~ 1613 (2114)
.+ ....+..++ ...-|+|+|+=|++.|+..+..+...-.... .+.
T Consensus 339 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~--------~~~ 410 (1041)
T COG4581 339 VRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLT--------EEK 410 (1041)
T ss_pred ccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccC--------CcH
Confidence 00 000111111 3456899999999999999987753221111 112
Q ss_pred cc-chhhH----hhh---------hHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcE
Q 000129 1614 EE-VEPFI----DNI---------QEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHL 1679 (2114)
Q Consensus 1614 ~~-l~~~~----~~i---------~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~ 1679 (2114)
+. +..++ ..+ .-..+...+..|+++||+||-+..|..|+.+|..|-++|++||.+++.|+|.|+.+
T Consensus 411 e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPart 490 (1041)
T COG4581 411 ERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPART 490 (1041)
T ss_pred HHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccc
Confidence 22 22221 112 12445678889999999999999999999999999999999999999999999999
Q ss_pred EEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecC
Q 000129 1680 VVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP 1728 (2114)
Q Consensus 1680 vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~ 1728 (2114)
+|+.+.++|+|..++ +.+..+|.||.|||||.|.|..|.++++....
T Consensus 491 vv~~~l~K~dG~~~r--~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~ 537 (1041)
T COG4581 491 VVFTSLSKFDGNGHR--WLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPF 537 (1041)
T ss_pred eeeeeeEEecCCcee--ecChhHHHHhhhhhccccccccceEEEecCCC
Confidence 999999999998664 56899999999999999999999999995544
No 92
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-35 Score=337.52 Aligned_cols=335 Identities=19% Similarity=0.315 Sum_probs=254.3
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.||.+|+|||+++.|.+|.+.+ ++.+|.||+|||++|++|-+-++.......+ +..++.+|+++||++|+.|+....
T Consensus 238 ~GFqKPtPIqSQaWPI~LQG~D-liGVAQTgtgKtL~~L~pg~ihi~aqp~~~~--qr~~p~~lvl~ptreLalqie~e~ 314 (629)
T KOG0336|consen 238 TGFQKPTPIQSQAWPILLQGID-LIGVAQTGTGKTLAFLLPGFIHIDAQPKRRE--QRNGPGVLVLTPTRELALQIEGEV 314 (629)
T ss_pred ccCCCCCcchhcccceeecCcc-eEEEEecCCCcCHHHhccceeeeeccchhhh--ccCCCceEEEeccHHHHHHHHhHH
Confidence 5999999999999999988877 9999999999999999998776654332222 345678999999999999998887
Q ss_pred HHhhccCCcEEEEEeCCCccChh---hhccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccccccc-CCchhHHH
Q 000129 571 SNRLQMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLES 645 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~---~~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~ 645 (2114)
.+. ..-|.+..+++|+.+...+ ...+..|+++||+++ |+..... ..+..+-++|+|||+.|+| ++.|.+..
T Consensus 315 ~ky-syng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~---i~l~siTYlVlDEADrMLDMgFEpqIrk 390 (629)
T KOG0336|consen 315 KKY-SYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNV---INLASITYLVLDEADRMLDMGFEPQIRK 390 (629)
T ss_pred hHh-hhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCe---eeeeeeEEEEecchhhhhcccccHHHHH
Confidence 764 3447777777776665543 246889999999998 4443332 5678899999999999999 78888877
Q ss_pred HHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCccccc---ceeEEEeeccCchhHHHHHhhHH
Q 000129 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVP---LSQQYIGIQVKKPLQRFQLMNDL 722 (2114)
Q Consensus 646 iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~---l~~~~~~~~~~~~~~~~~~~~~~ 722 (2114)
|+-. ..++.|.++.|||-|. .+.+........++.++..+.--+. +.|.++ ++.. ..++..+.
T Consensus 391 illd-------iRPDRqtvmTSATWP~--~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~-v~~d--~~k~~~~~-- 456 (629)
T KOG0336|consen 391 ILLD-------IRPDRQTVMTSATWPE--GVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNII-VTTD--SEKLEIVQ-- 456 (629)
T ss_pred Hhhh-------cCCcceeeeecccCch--HHHHHHHHhhhCceEEEecccceeeeeeeeeeEE-eccc--HHHHHHHH--
Confidence 6554 3678999999999984 4544444444555666655544332 233332 2222 22222222
Q ss_pred HHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecC
Q 000129 723 CYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHA 802 (2114)
Q Consensus 723 ~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHa 802 (2114)
..+..+....++||||.++-.|..+...|+-.++.... +||
T Consensus 457 --~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~-------------------------------------lHG 497 (629)
T KOG0336|consen 457 --FFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQS-------------------------------------LHG 497 (629)
T ss_pred --HHHHhcCCCceEEEEEechhhhhhccchhhhcccchhh-------------------------------------ccC
Confidence 22334555779999999998887777666655444332 399
Q ss_pred CCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEE
Q 000129 803 GMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEG 882 (2114)
Q Consensus 803 gl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~ 882 (2114)
+-.+.+|+..++.|++|.++|||||+++++|+|+|++++|++ ||.+. .+.+|+||+||+||+| ..|.+
T Consensus 498 ~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~N----yDFP~------nIeeYVHRvGrtGRaG--r~G~s 565 (629)
T KOG0336|consen 498 NREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYN----YDFPR------NIEEYVHRVGRTGRAG--RTGTS 565 (629)
T ss_pred ChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeec----cCCCc------cHHHHHHHhcccccCC--CCcce
Confidence 999999999999999999999999999999999999999999 77765 7889999999999998 78999
Q ss_pred EEEcCCCcHHHHHHh
Q 000129 883 IIITGHSELRYYLSL 897 (2114)
Q Consensus 883 iil~~~~e~~~~~~l 897 (2114)
+.+.+..+......+
T Consensus 566 is~lt~~D~~~a~eL 580 (629)
T KOG0336|consen 566 ISFLTRNDWSMAEEL 580 (629)
T ss_pred EEEEehhhHHHHHHH
Confidence 999888876655543
No 93
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.1e-34 Score=383.64 Aligned_cols=333 Identities=17% Similarity=0.287 Sum_probs=244.8
Q ss_pred ccccChhHHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHH
Q 000129 1324 VTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403 (2114)
Q Consensus 1324 ~~~L~~~~~~~l~~gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La 1403 (2114)
...+....++..| ||..|+|+|.++++.+++++ ++++++|||||||+||++|++.. .+ .+|||+|+++|+
T Consensus 9 ~~~~~~~~l~~~f-G~~~~r~~Q~~ai~~il~g~-dvlv~apTGsGKTl~y~lpal~~------~g--~tlVisPl~sL~ 78 (607)
T PRK11057 9 LESLAKQVLQETF-GYQQFRPGQQEIIDAVLSGR-DCLVVMPTGGGKSLCYQIPALVL------DG--LTLVVSPLISLM 78 (607)
T ss_pred chhHHHHHHHHHc-CCCCCCHHHHHHHHHHHcCC-CEEEEcCCCchHHHHHHHHHHHc------CC--CEEEEecHHHHH
Confidence 3444455666666 59999999999999999865 59999999999999999999832 34 789999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEcCCcccch-----hhc--cCCcEEEEChhhHHH--HHhhhcccccccceeEEEecccc
Q 000129 1404 KERYRDWEIKFGQGLGMRVVELTGETAMDL-----KLL--EKGQIIISTPEKWDA--LSRRWKQRKYVQQVSLFIIDELH 1474 (2114)
Q Consensus 1404 ~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~-----~~l--~~~~IIV~TPe~l~~--l~r~~~~~~~l~~v~liIiDEaH 1474 (2114)
.|++..++. + |+.+..+.+....+. ..+ ...+++++||+++.. +... ....++++|||||||
T Consensus 79 ~dqv~~l~~-~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~----l~~~~l~~iVIDEaH 149 (607)
T PRK11057 79 KDQVDQLLA-N----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEH----LAHWNPALLAVDEAH 149 (607)
T ss_pred HHHHHHHHH-c----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHH----HhhCCCCEEEEeCcc
Confidence 999998873 2 677777777655431 112 234899999999752 2222 223478999999999
Q ss_pred cccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCCh--hHHHHHhcCCCCceeecCCCCCccCcEEEEecccccch
Q 000129 1475 LIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNF 1552 (2114)
Q Consensus 1475 ~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~--~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~ 1552 (2114)
++.++ |..+...+.++..+...+ ++.+++++|||+++. .++..+++.....++ .....||. +...+.. ...
T Consensus 150 ~i~~~-G~~fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~-~~~~~r~n-l~~~v~~--~~~- 222 (607)
T PRK11057 150 CISQW-GHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISSFDRPN-IRYTLVE--KFK- 222 (607)
T ss_pred ccccc-cCcccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEE-ECCCCCCc-ceeeeee--ccc-
Confidence 99754 344444444454444333 478899999999774 367777765543222 22222332 1111110 000
Q ss_pred HHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHh
Q 000129 1553 EARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL 1632 (2114)
Q Consensus 1553 ~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l 1632 (2114)
.. ......+ .. ..++++||||+|+++|+.++..|.. .
T Consensus 223 --~~----~~l~~~l-~~-~~~~~~IIFc~tr~~~e~la~~L~~-----------------------------------~ 259 (607)
T PRK11057 223 --PL----DQLMRYV-QE-QRGKSGIIYCNSRAKVEDTAARLQS-----------------------------------R 259 (607)
T ss_pred --hH----HHHHHHH-Hh-cCCCCEEEEECcHHHHHHHHHHHHh-----------------------------------C
Confidence 00 1111111 22 4567899999999999999977632 1
Q ss_pred ccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCC
Q 000129 1633 RHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASR 1712 (2114)
Q Consensus 1633 ~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR 1712 (2114)
+..+..+||+|++++|..+++.|++|.++|||||+++++|||+|++++|| |++.|.+..+|+||+|||||
T Consensus 260 g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI----------~~d~P~s~~~y~Qr~GRaGR 329 (607)
T PRK11057 260 GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVV----------HFDIPRNIESYYQETGRAGR 329 (607)
T ss_pred CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEE----------EeCCCCCHHHHHHHhhhccC
Confidence 34589999999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred CCCCCceEEEEEeecCcHHHHHHHH
Q 000129 1713 PLLDNSGKCVILCHAPRKEYYKKFL 1737 (2114)
Q Consensus 1713 ~~~~~~G~~iil~~~~~~~~~~~~l 1737 (2114)
. +..|.|++++...+...+++++
T Consensus 330 ~--G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 330 D--GLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred C--CCCceEEEEeCHHHHHHHHHHH
Confidence 8 5789999999988877777666
No 94
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-34 Score=338.83 Aligned_cols=346 Identities=21% Similarity=0.288 Sum_probs=245.4
Q ss_pred CCCCCCHHHHHHHHHHHcC--------CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHH
Q 000129 1338 GFKHFNPIQTQVFTVLYNT--------DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~--------~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~ 1409 (2114)
+++...|+|.++++.++.. ..++.|.||||||||+||.+||++.+.. ++-...|||+|+|+++|+.|++..
T Consensus 156 ~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~-R~v~~LRavVivPtr~L~~QV~~~ 234 (620)
T KOG0350|consen 156 AISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSS-RPVKRLRAVVIVPTRELALQVYDT 234 (620)
T ss_pred hcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHcc-CCccceEEEEEeeHHHHHHHHHHH
Confidence 5889999999999998641 3459999999999999999999999988 444557999999999999999999
Q ss_pred HHHHhcCCCCcEEEEEcCCcccchh---hc-----cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCC-
Q 000129 1410 WEIKFGQGLGMRVVELTGETAMDLK---LL-----EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG- 1480 (2114)
Q Consensus 1410 ~~~~f~~~~g~~v~~l~G~~~~~~~---~l-----~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~- 1480 (2114)
|. ++....|+.|+.++|..+.... .. ...||+|+||++|..+++.. ....+++++++||||||+|++..
T Consensus 235 f~-~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~-k~f~Lk~LrfLVIDEADRll~qsf 312 (620)
T KOG0350|consen 235 FK-RLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNT-KSFDLKHLRFLVIDEADRLLDQSF 312 (620)
T ss_pred HH-HhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCC-CCcchhhceEEEechHHHHHHHHH
Confidence 99 6777789999999998775421 11 23499999999999888863 34479999999999999987532
Q ss_pred C---chHHHHHHHHH------HHHhh------------------cCCCceEEEEcccCCC-hhHHHHHhcCCCCceeecC
Q 000129 1481 G---PVLEVIVSRMR------YIASQ------------------VENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFP 1532 (2114)
Q Consensus 1481 g---~~le~i~srl~------~i~~~------------------~~~~~riV~lSATl~n-~~dla~wl~~~~~~~~~f~ 1532 (2114)
. +.++..+..++ .+..+ +..+...+.+|||+.. +..+.++-- ....++...
T Consensus 313 Q~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l-~~Prl~~v~ 391 (620)
T KOG0350|consen 313 QEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTL-HIPRLFHVS 391 (620)
T ss_pred HHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhc-CCCceEEee
Confidence 1 11111111111 00000 1123345666777653 223333211 111111111
Q ss_pred CCCCccCcEEEEecccccchHHH----HHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccc
Q 000129 1533 PGVRPVPLEIHIQGVDITNFEAR----MQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAF 1608 (2114)
Q Consensus 1533 ~~~rpv~l~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~ 1608 (2114)
. |. +..+..+..... .....++.+...+-+..+..++|+|++|..++..++..|.-...
T Consensus 392 ~---~~-----~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~--------- 454 (620)
T KOG0350|consen 392 K---PL-----IGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFC--------- 454 (620)
T ss_pred c---cc-----ceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhc---------
Confidence 0 00 000111111110 01112333322222225678999999999999999877742211
Q ss_pred cCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEe
Q 000129 1609 LLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYY 1688 (2114)
Q Consensus 1609 l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~y 1688 (2114)
.....+..+.|+++...|...++.|+.|.++|||||++++||+|+.++..||
T Consensus 455 ----------------------~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VI------ 506 (620)
T KOG0350|consen 455 ----------------------SDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVI------ 506 (620)
T ss_pred ----------------------cccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEe------
Confidence 1223355688999999999999999999999999999999999999999999
Q ss_pred cCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHHHHHH
Q 000129 1689 DGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLR 1738 (2114)
Q Consensus 1689 d~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~~~lR 1738 (2114)
+|+.|.+...|+||+||++|+ +..|.|+.+....+...|.+++.
T Consensus 507 ----NYd~P~~~ktyVHR~GRTARA--gq~G~a~tll~~~~~r~F~klL~ 550 (620)
T KOG0350|consen 507 ----NYDPPASDKTYVHRAGRTARA--GQDGYAITLLDKHEKRLFSKLLK 550 (620)
T ss_pred ----ecCCCchhhHHHHhhcccccc--cCCceEEEeeccccchHHHHHHH
Confidence 999999999999999999999 68999999999998888888883
No 95
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.9e-34 Score=383.27 Aligned_cols=329 Identities=19% Similarity=0.273 Sum_probs=250.6
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHH
Q 000129 1331 LYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDW 1410 (2114)
Q Consensus 1331 ~~~~l~~gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~ 1410 (2114)
.++..|. |.+|+|+|.++++.+++++ ++++++|||+|||+||++|++. ..+ .++||+|+++|+.|++..+
T Consensus 4 ~l~~~fg-~~~fr~~Q~~~i~~il~g~-dvlv~~PTG~GKTl~y~lpal~------~~g--~~lVisPl~sL~~dq~~~l 73 (591)
T TIGR01389 4 VLKRTFG-YDDFRPGQEEIISHVLDGR-DVLVVMPTGGGKSLCYQVPALL------LKG--LTVVISPLISLMKDQVDQL 73 (591)
T ss_pred HHHHhcC-CCCCCHHHHHHHHHHHcCC-CEEEEcCCCccHhHHHHHHHHH------cCC--cEEEEcCCHHHHHHHHHHH
Confidence 3555664 9999999999999999866 5999999999999999999873 234 7899999999999999988
Q ss_pred HHHhcCCCCcEEEEEcCCcccch-----hhc--cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCch
Q 000129 1411 EIKFGQGLGMRVVELTGETAMDL-----KLL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483 (2114)
Q Consensus 1411 ~~~f~~~~g~~v~~l~G~~~~~~-----~~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~ 1483 (2114)
+. + |+.+..++|+.+.+. ..+ ...+|+++||+++... .|.......++++|||||||++.. .|+.
T Consensus 74 ~~-~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~--~~~~~l~~~~l~~iViDEaH~i~~-~g~~ 145 (591)
T TIGR01389 74 RA-A----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQD--YFLNMLQRIPIALVAVDEAHCVSQ-WGHD 145 (591)
T ss_pred HH-c----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcCh--HHHHHHhcCCCCEEEEeCCccccc-ccCc
Confidence 74 2 678888888776542 112 2458999999997532 222333456899999999999974 4566
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEEcccCCCh--hHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCH
Q 000129 1484 LEVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTK 1561 (2114)
Q Consensus 1484 le~i~srl~~i~~~~~~~~riV~lSATl~n~--~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~ 1561 (2114)
++..+.++..+...++. .+++++|||.+.. .++..|++......+. .+..||. +...+... ... ..
T Consensus 146 frp~y~~l~~l~~~~~~-~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~-~~~~r~n-l~~~v~~~--~~~-------~~ 213 (591)
T TIGR01389 146 FRPEYQRLGSLAERFPQ-VPRIALTATADAETRQDIRELLRLADANEFI-TSFDRPN-LRFSVVKK--NNK-------QK 213 (591)
T ss_pred cHHHHHHHHHHHHhCCC-CCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe-cCCCCCC-cEEEEEeC--CCH-------HH
Confidence 66667777766665543 4599999998763 4788999876544443 2333432 22222111 010 01
Q ss_pred HHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecC
Q 000129 1562 PTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHE 1641 (2114)
Q Consensus 1562 ~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~ 1641 (2114)
.....+.. ..++++||||+|++.|+.++..|.. .+..++.+||
T Consensus 214 ~l~~~l~~--~~~~~~IIf~~sr~~~e~la~~L~~-----------------------------------~g~~~~~~H~ 256 (591)
T TIGR01389 214 FLLDYLKK--HRGQSGIIYASSRKKVEELAERLES-----------------------------------QGISALAYHA 256 (591)
T ss_pred HHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHh-----------------------------------CCCCEEEEEC
Confidence 12222222 2367899999999999999876632 2345789999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEE
Q 000129 1642 GLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKC 1721 (2114)
Q Consensus 1642 ~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~ 1721 (2114)
+|+.++|..+++.|.+|.++|||||+++++|||+|++++|| |++.|.++.+|+||+|||||. +..|.|
T Consensus 257 ~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI----------~~~~p~s~~~y~Q~~GRaGR~--G~~~~~ 324 (591)
T TIGR01389 257 GLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVI----------HYDMPGNLESYYQEAGRAGRD--GLPAEA 324 (591)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEE----------EcCCCCCHHHHhhhhccccCC--CCCceE
Confidence 99999999999999999999999999999999999999999 899999999999999999997 578999
Q ss_pred EEEeecCcHHHHHHHHH
Q 000129 1722 VILCHAPRKEYYKKFLR 1738 (2114)
Q Consensus 1722 iil~~~~~~~~~~~~lR 1738 (2114)
++++...+...++.++.
T Consensus 325 il~~~~~d~~~~~~~i~ 341 (591)
T TIGR01389 325 ILLYSPADIALLKRRIE 341 (591)
T ss_pred EEecCHHHHHHHHHHHh
Confidence 99999888877776663
No 96
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.6e-35 Score=355.13 Aligned_cols=341 Identities=18% Similarity=0.256 Sum_probs=252.5
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccC--------CCceEEEEEcccHHHHHHHHHH
Q 000129 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE--------TGVMRAVYIAPLEALAKERYRD 1409 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~--------~~~~k~l~I~Ptr~La~q~~~~ 1409 (2114)
++..|||+|+-+|+.+..+++ +++||+||||||.+|++|++.++..... ...+++++++|||+||.|++++
T Consensus 93 ~~~~ptpvQk~sip~i~~Grd-l~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~ne 171 (482)
T KOG0335|consen 93 GYTKPTPVQKYSIPIISGGRD-LMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNE 171 (482)
T ss_pred cccCCCcceeeccceeecCCc-eEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHH
Confidence 699999999999999988777 9999999999999999999999887521 1247999999999999999999
Q ss_pred HHHHhcCCCCcEEEEEcCCcccc---hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC-C-CCchH
Q 000129 1410 WEIKFGQGLGMRVVELTGETAMD---LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-Q-GGPVL 1484 (2114)
Q Consensus 1410 ~~~~f~~~~g~~v~~l~G~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~-~-~g~~l 1484 (2114)
.+ +|.-..+++++..+|+.+.. ...-..++|+||||+++.+++.+ ....+++++++|+|||+.+.+ . .+|.+
T Consensus 172 a~-k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~--g~i~l~~~k~~vLDEADrMlD~mgF~p~I 248 (482)
T KOG0335|consen 172 AR-KFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIER--GKISLDNCKFLVLDEADRMLDEMGFEPQI 248 (482)
T ss_pred HH-hhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhc--ceeehhhCcEEEecchHHhhhhccccccH
Confidence 98 67766788999999986543 22345669999999999988876 456789999999999999888 3 46666
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHH-HhcCCC--CceeecCCCCCccCcEEEEecccccchHHHHHhcC
Q 000129 1485 EVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGE-WIGATS--HGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMT 1560 (2114)
Q Consensus 1485 e~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~-wl~~~~--~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~ 1560 (2114)
..++.++.... ....|.++||||.+.. ..++. ++.... ..+-.+... ...+...+..+.......
T Consensus 249 r~iv~~~~~~~---~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~--~~ni~q~i~~V~~~~kr~------ 317 (482)
T KOG0335|consen 249 RKIVEQLGMPP---KNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGST--SENITQKILFVNEMEKRS------ 317 (482)
T ss_pred HHHhcccCCCC---ccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccc--cccceeEeeeecchhhHH------
Confidence 66655443221 2468999999999752 22322 332210 001111111 111111222111111111
Q ss_pred HHHHHHHHHHh--cCCC-----CEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhc
Q 000129 1561 KPTFTAIVQHA--KNEK-----PALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLR 1633 (2114)
Q Consensus 1561 ~~~~~~i~~~l--~~~~-----~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~ 1633 (2114)
.++..+.... ...+ .++|||.|++.|..++..|.. ..
T Consensus 318 -~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~-----------------------------------~~ 361 (482)
T KOG0335|consen 318 -KLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSS-----------------------------------NG 361 (482)
T ss_pred -HHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhc-----------------------------------CC
Confidence 1111111110 0122 699999999999998876632 23
Q ss_pred cceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCC
Q 000129 1634 HGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRP 1713 (2114)
Q Consensus 1634 ~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~ 1713 (2114)
+....+|+..++.+|...++.|++|.+.|||||++++||+|+|+|.+|| +|++|..+.+|+||+||+||.
T Consensus 362 ~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVI----------nyDmP~d~d~YvHRIGRTGR~ 431 (482)
T KOG0335|consen 362 YPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVI----------NYDMPADIDDYVHRIGRTGRV 431 (482)
T ss_pred CCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeE----------EeecCcchhhHHHhccccccC
Confidence 4467799999999999999999999999999999999999999999999 899999999999999999998
Q ss_pred CCCCceEEEEEeecCcHHHHHHHHHhcc
Q 000129 1714 LLDNSGKCVILCHAPRKEYYKKFLRLTQ 1741 (2114)
Q Consensus 1714 ~~~~~G~~iil~~~~~~~~~~~~lRl~~ 1741 (2114)
+..|.++.|+........+.+.+++.
T Consensus 432 --Gn~G~atsf~n~~~~~i~~~L~~~l~ 457 (482)
T KOG0335|consen 432 --GNGGRATSFFNEKNQNIAKALVEILT 457 (482)
T ss_pred --CCCceeEEEeccccchhHHHHHHHHH
Confidence 68999999999877776666665443
No 97
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=3.5e-34 Score=382.91 Aligned_cols=391 Identities=16% Similarity=0.173 Sum_probs=274.6
Q ss_pred cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchh
Q 000129 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK 1434 (2114)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~ 1434 (2114)
.++.++++.||||||||+++.+++++.... .+ +++|++|||++|.|+++++.+.++...|..|+..++..+..
T Consensus 18 ~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~---~~--~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~~-- 90 (812)
T PRK11664 18 KTAPQVLLKAPTGAGKSTWLPLQLLQHGGI---NG--KIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESKV-- 90 (812)
T ss_pred HhCCCEEEEcCCCCCHHHHHHHHHHHcCCc---CC--eEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCcccc--
Confidence 446679999999999999999999975322 34 89999999999999999998788877788888777654321
Q ss_pred hccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCCh
Q 000129 1435 LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA 1514 (2114)
Q Consensus 1435 ~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~ 1514 (2114)
-.+.+|+|+||+++..++.. ...++++++||+||+|...-.. ...+..++.+...++.+.|+|+||||++.
T Consensus 91 -~~~t~I~v~T~G~Llr~l~~---d~~L~~v~~IIlDEaHER~l~~----Dl~L~ll~~i~~~lr~~lqlilmSATl~~- 161 (812)
T PRK11664 91 -GPNTRLEVVTEGILTRMIQR---DPELSGVGLVILDEFHERSLQA----DLALALLLDVQQGLRDDLKLLIMSATLDN- 161 (812)
T ss_pred -CCCCcEEEEChhHHHHHHhh---CCCcCcCcEEEEcCCCcccccc----chHHHHHHHHHHhCCccceEEEEecCCCH-
Confidence 13458999999998777654 4579999999999999532111 11233333444445678999999999954
Q ss_pred hHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHh-cCCCCEEEEeCChHHHHHHHHH
Q 000129 1515 KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHA-KNEKPALVFVPSRKYVRLTAVD 1593 (2114)
Q Consensus 1515 ~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~~~LVFv~sr~~a~~la~~ 1593 (2114)
..+.++++... ++.. ..+..|++.++........ .. ......+...+ ...+.+|||||++++++.++..
T Consensus 162 ~~l~~~~~~~~--~I~~--~gr~~pV~~~y~~~~~~~~---~~---~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~ 231 (812)
T PRK11664 162 DRLQQLLPDAP--VIVS--EGRSFPVERRYQPLPAHQR---FD---EAVARATAELLRQESGSLLLFLPGVGEIQRVQEQ 231 (812)
T ss_pred HHHHHhcCCCC--EEEe--cCccccceEEeccCchhhh---HH---HHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHH
Confidence 56788876432 2322 2344556655443221111 10 01111222222 2468899999999999999977
Q ss_pred HHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccc
Q 000129 1594 LMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGV 1673 (2114)
Q Consensus 1594 L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gv 1673 (2114)
|..... .+..|..+||+|+..+|..+++.|++|+.+|||||+++++||
T Consensus 232 L~~~~~--------------------------------~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsL 279 (812)
T PRK11664 232 LASRVA--------------------------------SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSL 279 (812)
T ss_pred HHHhcc--------------------------------CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcc
Confidence 743110 123488899999999999999999999999999999999999
Q ss_pred CCCCcEEEEE-e---eeEecCCcCc----CCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHHHHHHhccCCCC
Q 000129 1674 PLTAHLVVVM-G---TQYYDGQENA----HTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLRLTQNPNY 1745 (2114)
Q Consensus 1674 dip~~~vVI~-g---t~~yd~~~~~----~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~~~lRl~~nP~~ 1745 (2114)
|+|++.+||- | ...||...+. ..++|.++|.||+|||||. ..|.||.++++.....+. -...|..
T Consensus 280 tIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~~~~l~----~~~~PEI 352 (812)
T PRK11664 280 TIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQAERAA----AQSEPEI 352 (812)
T ss_pred cccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHHHhhCc----cCCCCce
Confidence 9999999993 2 2346665443 2367889999999999995 699999999865433211 1111211
Q ss_pred c--------------cccCCC-ccchHHHHHHHHHHHHHHHHHCCCceecCCCccccCcccchhhhcccCHhHHHHHHhh
Q 000129 1746 Y--------------NLQGVS-HRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSS 1810 (2114)
Q Consensus 1746 y--------------~l~~~s-~~~l~~~lselve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~i~~~T~~~f~~s 1810 (2114)
. ++.+.. ..-++....+.++.++..|...|+|+- +...|++|+.|+.++++|...++++.+
T Consensus 353 ~r~dL~~~~L~l~~~g~~~~~~~~~ld~P~~~~~~~A~~~L~~lgald~----~g~lT~~G~~m~~lp~~Prla~~ll~a 428 (812)
T PRK11664 353 LHSDLSGLLLELLQWGCHDPAQLSWLDQPPAAALAAAKRLLQQLGALDG----QGRLTARGRKMAALGNDPRLAAMLVAA 428 (812)
T ss_pred eccchHHHHHHHHHcCCCCHHhCCCCCCCCHHHHHHHHHHHHHCCCCCC----CCCcCHHHHHHHhcCCchHHHHHHHHH
Confidence 1 111100 011112234689999999999999953 236899999999999999999999876
Q ss_pred cCCC
Q 000129 1811 LTPK 1814 (2114)
Q Consensus 1811 l~~~ 1814 (2114)
....
T Consensus 429 ~~~~ 432 (812)
T PRK11664 429 KEDD 432 (812)
T ss_pred HhcC
Confidence 5433
No 98
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-36 Score=354.16 Aligned_cols=367 Identities=19% Similarity=0.246 Sum_probs=257.1
Q ss_pred CCCCCcccccChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc---------C
Q 000129 1318 DLQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS---------E 1387 (2114)
Q Consensus 1318 dl~p~~~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~---------~ 1387 (2114)
|+..|.--.|+.+.++++-. ||..|++||+.+++.+..+..+++-.|.||||||++|-+||+..+.... .
T Consensus 179 DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~ 258 (731)
T KOG0347|consen 179 DVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTS 258 (731)
T ss_pred ChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHH
Confidence 33333333456677788754 8999999999999999998777999999999999999999998554421 1
Q ss_pred CCceE--EEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccc--hhhcc-CCcEEEEChhhHHHHHhhhcc-ccc
Q 000129 1388 TGVMR--AVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD--LKLLE-KGQIIISTPEKWDALSRRWKQ-RKY 1461 (2114)
Q Consensus 1388 ~~~~k--~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~--~~~l~-~~~IIV~TPe~l~~l~r~~~~-~~~ 1461 (2114)
...++ +||++|||+||.|+.+.+. ......++++..++|+.... .+.++ .++|+|+|||+|..++..... -..
T Consensus 259 ~k~~k~~~LV~tPTRELa~QV~~Hl~-ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~ 337 (731)
T KOG0347|consen 259 AKYVKPIALVVTPTRELAHQVKQHLK-AIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGN 337 (731)
T ss_pred hccCcceeEEecChHHHHHHHHHHHH-HhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhh
Confidence 11234 9999999999999999998 56677899999999998764 33443 559999999999888875333 236
Q ss_pred ccceeEEEecccccccCCCCchHHHHHHHHHHHH-hhcCCCceEEEEcccCCChh--HHHHHhcCCCCc---------ee
Q 000129 1462 VQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIA-SQVENKIRIVALSTSLANAK--DLGEWIGATSHG---------LF 1529 (2114)
Q Consensus 1462 l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~-~~~~~~~riV~lSATl~n~~--dla~wl~~~~~~---------~~ 1529 (2114)
++++.++|+||+|++...+ .++.+-..++.+. .+.....|.+.+|||+.-.. .+..-....... ++
T Consensus 338 ~k~vkcLVlDEaDRmvekg--hF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lm 415 (731)
T KOG0347|consen 338 FKKVKCLVLDEADRMVEKG--HFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLM 415 (731)
T ss_pred hhhceEEEEccHHHHhhhc--cHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHH
Confidence 8899999999999998654 2333333333333 34456789999999985321 111111000000 00
Q ss_pred -ecCCCCCccCcEEEEecccccchHHHHHhc---CHHH--HHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCc
Q 000129 1530 -NFPPGVRPVPLEIHIQGVDITNFEARMQAM---TKPT--FTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGD 1603 (2114)
Q Consensus 1530 -~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~---~~~~--~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~ 1603 (2114)
...-...|.-+....+.............. .+.. |-.+. .-.+.+|||||+...+..++-.|.
T Consensus 416 k~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~---ryPGrTlVF~NsId~vKRLt~~L~-------- 484 (731)
T KOG0347|consen 416 KKIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLT---RYPGRTLVFCNSIDCVKRLTVLLN-------- 484 (731)
T ss_pred HHhCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEe---ecCCceEEEechHHHHHHHHHHHh--------
Confidence 000001111111110000000000000000 0000 00111 125789999999998888775542
Q ss_pred ccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEE
Q 000129 1604 QKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVM 1683 (2114)
Q Consensus 1604 ~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~ 1683 (2114)
.+...-..+|+.|.+..|..-++.|++..-.|||||++++||+|||++.+||
T Consensus 485 ---------------------------~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVI- 536 (731)
T KOG0347|consen 485 ---------------------------NLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVI- 536 (731)
T ss_pred ---------------------------hcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEE-
Confidence 2334456799999999999999999999999999999999999999999999
Q ss_pred eeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHHHHH
Q 000129 1684 GTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFL 1737 (2114)
Q Consensus 1684 gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~~~l 1737 (2114)
||.+|.+..-|+||.||+.|+ ...|..++||.+.+...|+++-
T Consensus 537 ---------HYqVPrtseiYVHRSGRTARA--~~~Gvsvml~~P~e~~~~~KL~ 579 (731)
T KOG0347|consen 537 ---------HYQVPRTSEIYVHRSGRTARA--NSEGVSVMLCGPQEVGPLKKLC 579 (731)
T ss_pred ---------EeecCCccceeEecccccccc--cCCCeEEEEeChHHhHHHHHHH
Confidence 999999999999999999999 7899999999998877777655
No 99
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.3e-35 Score=331.21 Aligned_cols=346 Identities=17% Similarity=0.267 Sum_probs=256.6
Q ss_pred hHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhc----cCCCceEEEEEcccHHHHH
Q 000129 1330 PLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA----SETGVMRAVYIAPLEALAK 1404 (2114)
Q Consensus 1330 ~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~----~~~~~~k~l~I~Ptr~La~ 1404 (2114)
+.++++-+ ||..|+|||+|+.|.++++.+ ++..|.||+|||++|++|-+-++... ....++.+|++.|||+|+.
T Consensus 230 evmenIkK~GFqKPtPIqSQaWPI~LQG~D-liGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLal 308 (629)
T KOG0336|consen 230 EVMENIKKTGFQKPTPIQSQAWPILLQGID-LIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELAL 308 (629)
T ss_pred HHHHHHHhccCCCCCcchhcccceeecCcc-eEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHH
Confidence 44556655 899999999999999999877 99999999999999999988776543 1233568999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcCCcccc--hhhccCC-cEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCC
Q 000129 1405 ERYRDWEIKFGQGLGMRVVELTGETAMD--LKLLEKG-QIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2114)
Q Consensus 1405 q~~~~~~~~f~~~~g~~v~~l~G~~~~~--~~~l~~~-~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g 1481 (2114)
|+.-..+ ++.- -|.+.+++.|+-+.+ ...++++ +||++||++|..+... ...++.++.++|+||||.+++.+
T Consensus 309 qie~e~~-kysy-ng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~--n~i~l~siTYlVlDEADrMLDMg- 383 (629)
T KOG0336|consen 309 QIEGEVK-KYSY-NGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMD--NVINLASITYLVLDEADRMLDMG- 383 (629)
T ss_pred HHHhHHh-Hhhh-cCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhc--CeeeeeeeEEEEecchhhhhccc-
Confidence 9988777 3433 366666666665544 3445544 9999999999888765 45679999999999999999876
Q ss_pred chHHHHHHHHHHHHhhcCCCceEEEEcccCCC-hhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcC
Q 000129 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMT 1560 (2114)
Q Consensus 1482 ~~le~i~srl~~i~~~~~~~~riV~lSATl~n-~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~ 1560 (2114)
+-..++.+.-...++.|+++.|||-|. .+.++.-.-..+..+++ .+..-+...-.-+.+-.++-....
T Consensus 384 -----FEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~v--GsLdL~a~~sVkQ~i~v~~d~~k~---- 452 (629)
T KOG0336|consen 384 -----FEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYV--GSLDLVAVKSVKQNIIVTTDSEKL---- 452 (629)
T ss_pred -----ccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEe--cccceeeeeeeeeeEEecccHHHH----
Confidence 444455555555789999999999987 34566533333322222 222211111111111111111111
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeec
Q 000129 1561 KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLH 1640 (2114)
Q Consensus 1561 ~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H 1640 (2114)
.....+....+...++||||.++..|..+..+++- -+.....+|
T Consensus 453 -~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l-----------------------------------~gi~~q~lH 496 (629)
T KOG0336|consen 453 -EIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCL-----------------------------------KGISSQSLH 496 (629)
T ss_pred -HHHHHHHHhcCCCceEEEEEechhhhhhccchhhh-----------------------------------cccchhhcc
Confidence 22344445557888999999999877666655521 122356689
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceE
Q 000129 1641 EGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGK 1720 (2114)
Q Consensus 1641 ~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~ 1720 (2114)
|+-++.||+..++.|++|.++|||||++++||+|+|++++|+ +|++|.++.+|+||+||+||+ +..|.
T Consensus 497 G~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~----------NyDFP~nIeeYVHRvGrtGRa--Gr~G~ 564 (629)
T KOG0336|consen 497 GNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVY----------NYDFPRNIEEYVHRVGRTGRA--GRTGT 564 (629)
T ss_pred CChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceee----------ccCCCccHHHHHHHhcccccC--CCCcc
Confidence 999999999999999999999999999999999999999999 999999999999999999999 68999
Q ss_pred EEEEeecCcHHHHHHHHHhc
Q 000129 1721 CVILCHAPRKEYYKKFLRLT 1740 (2114)
Q Consensus 1721 ~iil~~~~~~~~~~~~lRl~ 1740 (2114)
++.+....+....+.++.++
T Consensus 565 sis~lt~~D~~~a~eLI~IL 584 (629)
T KOG0336|consen 565 SISFLTRNDWSMAEELIQIL 584 (629)
T ss_pred eEEEEehhhHHHHHHHHHHH
Confidence 99999988877777666443
No 100
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-34 Score=338.62 Aligned_cols=345 Identities=23% Similarity=0.314 Sum_probs=246.8
Q ss_pred CCCCCCCHHHHHHHHHHHcC--------CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSS--------ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~--------~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raL 562 (2114)
.+++.+.|+|..+++.++.. ..++.|.||||||||++|.+||++.+.... .+..++|+|+|+++|
T Consensus 155 ~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~-------v~~LRavVivPtr~L 227 (620)
T KOG0350|consen 155 MAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRP-------VKRLRAVVIVPTREL 227 (620)
T ss_pred hhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCC-------ccceEEEEEeeHHHH
Confidence 57899999999999988642 236999999999999999999999987653 234799999999999
Q ss_pred HHHHHHHHHHhhccCCcEEEEEeCCCccChhhh--------ccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccc
Q 000129 563 VAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQI--------EETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIH 633 (2114)
Q Consensus 563 a~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~--------~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH 633 (2114)
+.|++..|.++....|+.|+.++|..++..+.. ...+|+|+||+++ |+|..-.+ ..+++++++||||||
T Consensus 228 ~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~--f~Lk~LrfLVIDEAD 305 (620)
T KOG0350|consen 228 ALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKS--FDLKHLRFLVIDEAD 305 (620)
T ss_pred HHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCC--cchhhceEEEechHH
Confidence 999999999999999999999999988876532 2349999999998 77765332 678999999999999
Q ss_pred cccc-CCchhHHHHHHHH------------HHHHh---------------hccccccEEEEccccCC-hHHHHHHHhccc
Q 000129 634 LLHD-NRGPVLESIVART------------VRQIE---------------TTKEHIRLVGLSATLPN-YEDVALFLRVNL 684 (2114)
Q Consensus 634 ~l~d-~rg~~le~iv~rl------------~~~~~---------------~~~~~~riv~lSATlpn-~~dva~~l~~~~ 684 (2114)
+|++ .|..-+..++..+ ++... ...+....+.+|||+.. +..+.++--..|
T Consensus 306 Rll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~P 385 (620)
T KOG0350|consen 306 RLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIP 385 (620)
T ss_pred HHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCC
Confidence 9987 3333333222221 11110 01123345677888753 333333322111
Q ss_pred cCceEeec----CCcc-cccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhc
Q 000129 685 EKGLFYFD----NSYR-PVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALE 759 (2114)
Q Consensus 685 ~~~~~~f~----~~~r-pv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~ 759 (2114)
.++... ..|+ |..+....+.....-.. ..+|. ........++|+|++|...+.+++..|.-...+
T Consensus 386 --rl~~v~~~~~~ryslp~~l~~~~vv~~~~~kp-------l~~~~-lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~ 455 (620)
T KOG0350|consen 386 --RLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKP-------LAVYA-LITSNKLNRTLCFVNSVSSANRLAHVLKVEFCS 455 (620)
T ss_pred --ceEEeecccceeeecChhhhhceeecccccch-------HhHHH-HHHHhhcceEEEEecchHHHHHHHHHHHHHhcc
Confidence 122221 2222 22233332222211000 11222 333445679999999999999999988732111
Q ss_pred ccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCce
Q 000129 760 NDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAH 839 (2114)
Q Consensus 760 ~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v 839 (2114)
. ...+..+.|+++...|...++.|+.|.++|||||++++||+|+-++
T Consensus 456 ~---------------------------------~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v 502 (620)
T KOG0350|consen 456 D---------------------------------NFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDV 502 (620)
T ss_pred c---------------------------------cchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCccccc
Confidence 0 0112334899999999999999999999999999999999999999
Q ss_pred EEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcHHHHHHhhc
Q 000129 840 TVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMN 899 (2114)
Q Consensus 840 ~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~~ll~ 899 (2114)
++||+ ||++- +...|+||+||+||+| ..|.||.+....+...+.++++
T Consensus 503 ~~VIN----Yd~P~------~~ktyVHR~GRTARAg--q~G~a~tll~~~~~r~F~klL~ 550 (620)
T KOG0350|consen 503 DNVIN----YDPPA------SDKTYVHRAGRTARAG--QDGYAITLLDKHEKRLFSKLLK 550 (620)
T ss_pred ceEee----cCCCc------hhhHHHHhhccccccc--CCceEEEeeccccchHHHHHHH
Confidence 99999 88774 7889999999999998 6699999998888777777654
No 101
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.5e-35 Score=335.03 Aligned_cols=338 Identities=19% Similarity=0.254 Sum_probs=253.5
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
+|..+...+ +|+.+|||||.+-+|.++.+++ +|-.|-||||||++|.||++-........-.-....++..++|+|+
T Consensus 177 FP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRD-mIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPS 255 (610)
T KOG0341|consen 177 FPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRD-MIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPS 255 (610)
T ss_pred CCHHHHHHHHhcCCCCCCceeecCcceEeecCc-eeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCc
Confidence 355555555 7999999999999999998877 9999999999999999998765543221111223457789999999
Q ss_pred HHHHHHHHHHHHHhhccC------CcEEEEEeCCCccChhh---hccceEEEcCHhHH-HHHHhccCCCcccccccEEEE
Q 000129 560 KALVAEVVGNLSNRLQMY------DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLII 629 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~------gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIi 629 (2114)
|+||.|.+.-+..++..+ .++...+.|+.+...+. ..+.+|+|+||+++ |++.++. ..+.-++++.+
T Consensus 256 RELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~---~sLd~CRyL~l 332 (610)
T KOG0341|consen 256 RELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKI---MSLDACRYLTL 332 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhh---ccHHHHHHhhh
Confidence 999999998877765432 36788889998876653 46899999999998 8888776 35677899999
Q ss_pred eccccccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeec
Q 000129 630 DEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQ 708 (2114)
Q Consensus 630 DEaH~l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~ 708 (2114)
|||++|.| ++...+..|+..+ ....|.+++|||+| ..+..|.+..+.+++.+-.+.--...+..
T Consensus 333 DEADRmiDmGFEddir~iF~~F-------K~QRQTLLFSATMP--~KIQ~FAkSALVKPvtvNVGRAGAAsldV------ 397 (610)
T KOG0341|consen 333 DEADRMIDMGFEDDIRTIFSFF-------KGQRQTLLFSATMP--KKIQNFAKSALVKPVTVNVGRAGAASLDV------ 397 (610)
T ss_pred hhHHHHhhccchhhHHHHHHHH-------hhhhheeeeecccc--HHHHHHHHhhcccceEEecccccccchhH------
Confidence 99999999 6877777777665 34567899999999 66777777655443322222111111110
Q ss_pred cCchhHHHHHhhHHHHHHHHHHhC--CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCc
Q 000129 709 VKKPLQRFQLMNDLCYEKVVAVAG--KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKS 786 (2114)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~i~~~~~--~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~ 786 (2114)
-........-++++| +++... ..|+||||..+..+..+..+|.-++...
T Consensus 398 -iQevEyVkqEaKiVy--lLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlKGVEa-------------------------- 448 (610)
T KOG0341|consen 398 -IQEVEYVKQEAKIVY--LLECLQKTSPPVLIFAEKKADVDDIHEYLLLKGVEA-------------------------- 448 (610)
T ss_pred -HHHHHHHHhhhhhhh--HHHHhccCCCceEEEeccccChHHHHHHHHHcccee--------------------------
Confidence 000011111122222 233333 5699999999999999998887666543
Q ss_pred chhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHH
Q 000129 787 NDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQ 866 (2114)
Q Consensus 787 ~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Q 866 (2114)
...|||-.+++|....+.|+.|+-+|||||++++.|+|+|++.+||| ||.+. .+.+|+|
T Consensus 449 -----------vaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVIN----yDMP~------eIENYVH 507 (610)
T KOG0341|consen 449 -----------VAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVIN----YDMPE------EIENYVH 507 (610)
T ss_pred -----------EEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhcc----CCChH------HHHHHHH
Confidence 33499999999999999999999999999999999999999999999 66554 5778999
Q ss_pred hhcccCCCCCCCceEEEEEcCCCc
Q 000129 867 MLGRAGRPQYDSYGEGIIITGHSE 890 (2114)
Q Consensus 867 r~GRAGR~g~d~~G~~iil~~~~e 890 (2114)
|+||+||.| +.|.+..+.+...
T Consensus 508 RIGRTGRsg--~~GiATTfINK~~ 529 (610)
T KOG0341|consen 508 RIGRTGRSG--KTGIATTFINKNQ 529 (610)
T ss_pred HhcccCCCC--Ccceeeeeecccc
Confidence 999999988 7899988887643
No 102
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.6e-34 Score=335.20 Aligned_cols=334 Identities=19% Similarity=0.282 Sum_probs=259.8
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
..|.+++|+|-+++|.++.+.+ |+-.|-||||||.+|+.|++-+++.... -....++..||++|||+||.|++.+.
T Consensus 241 ~Ey~kptpiq~qalptalsgrd-vigIAktgSgktaAfi~pm~~himdq~e---L~~g~gPi~vilvPTrela~Qi~~ea 316 (731)
T KOG0339|consen 241 SEYEKPTPIQCQALPTALSGRD-VIGIAKTGSGKTAAFIWPMIVHIMDQPE---LKPGEGPIGVILVPTRELASQIFSEA 316 (731)
T ss_pred hhcccCCccccccccccccccc-chheeeccCcchhHHHHHHHHHhcchhh---hcCCCCCeEEEEeccHHHHHHHHHHH
Confidence 3588999999999999998877 9999999999999999999998876432 11236789999999999999999999
Q ss_pred HHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccccccc-CCchhHHH
Q 000129 571 SNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLES 645 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~ 645 (2114)
+++.+.+|+++..++|+.+...+. ..++.||||||+++ |++.-+. ..+.++.++||||++.|.+ ++-+...+
T Consensus 317 Kkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKa---tn~~rvS~LV~DEadrmfdmGfe~qVrS 393 (731)
T KOG0339|consen 317 KKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKA---TNLSRVSYLVLDEADRMFDMGFEPQVRS 393 (731)
T ss_pred HHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhc---ccceeeeEEEEechhhhhccccHHHHHH
Confidence 998899999999999998877653 36899999999997 7777665 4678899999999999998 68777777
Q ss_pred HHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcc--cccceeEEEeeccCchhHHHHHhhHHH
Q 000129 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYR--PVPLSQQYIGIQVKKPLQRFQLMNDLC 723 (2114)
Q Consensus 646 iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~r--pv~l~~~~~~~~~~~~~~~~~~~~~~~ 723 (2114)
|...+ .++.|.+++|||++- .+....+..+..++-....+.- ...+.|.+..+ .....+++. +
T Consensus 394 I~~hi-------rpdrQtllFsaTf~~--kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~--~s~~~Kl~w----l 458 (731)
T KOG0339|consen 394 IKQHI-------RPDRQTLLFSATFKK--KIEKLARDILSDPVRVVQGEVGEANEDITQTVSVC--PSEEKKLNW----L 458 (731)
T ss_pred HHhhc-------CCcceEEEeeccchH--HHHHHHHHHhcCCeeEEEeehhccccchhheeeec--cCcHHHHHH----H
Confidence 76554 688999999999873 3333333222222222222111 11223322222 122233322 2
Q ss_pred HHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCC
Q 000129 724 YEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAG 803 (2114)
Q Consensus 724 ~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHag 803 (2114)
...+.+....+++||||.-+..+++++..|.-.+ +.|+..||.
T Consensus 459 ~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~-------------------------------------~~v~llhgd 501 (731)
T KOG0339|consen 459 LRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKG-------------------------------------FNVSLLHGD 501 (731)
T ss_pred HHHhhhhccCCcEEEEEeccCCHHHHHHHhcccc-------------------------------------ceeeeecCc
Confidence 2334455557899999999999999998886544 346677999
Q ss_pred CCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEE
Q 000129 804 MTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883 (2114)
Q Consensus 804 l~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~i 883 (2114)
|.+.+|..++..|+.+...|||+|+++++|+|+|.+..||+ ||... ++..+.||+||+||.| ..|.+|
T Consensus 502 kdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvn----yD~ar------dIdththrigrtgRag--~kGvay 569 (731)
T KOG0339|consen 502 KDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVN----YDFAR------DIDTHTHRIGRTGRAG--EKGVAY 569 (731)
T ss_pred hhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeec----ccccc------hhHHHHHHhhhccccc--ccceee
Confidence 99999999999999999999999999999999999999999 77654 7788999999999998 569999
Q ss_pred EEcCCCcHHHHH
Q 000129 884 IITGHSELRYYL 895 (2114)
Q Consensus 884 il~~~~e~~~~~ 895 (2114)
.+.++.+..+.-
T Consensus 570 TlvTeKDa~fAG 581 (731)
T KOG0339|consen 570 TLVTEKDAEFAG 581 (731)
T ss_pred EEechhhHHHhh
Confidence 999988766443
No 103
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.5e-34 Score=324.15 Aligned_cols=350 Identities=18% Similarity=0.235 Sum_probs=258.6
Q ss_pred CCCccCCCCCCcccccChhHHHHHhc-CCCCCCHHHHHHHHHHHc-CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCC
Q 000129 1312 PPTELLDLQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYN-TDDNVLVAAPTGSGKTICSEFAILRNHQKASETG 1389 (2114)
Q Consensus 1312 ~~t~lldl~p~~~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~-~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~ 1389 (2114)
|.+|+.....+.--.|+.+.+..+|. +|..|+.||..++|.++. ..+|+|..+..|+|||.||.|.+|.+....- .
T Consensus 82 pnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~--~ 159 (477)
T KOG0332|consen 82 PNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDV--V 159 (477)
T ss_pred CCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccc--c
Confidence 55667777777777788889999997 899999999999999875 5689999999999999999999998876632 3
Q ss_pred ceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEE
Q 000129 1390 VMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFI 1469 (2114)
Q Consensus 1390 ~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liI 1469 (2114)
.|.++||+|+|+||.|+.+.+. ..|+..++++....-+........-..+|+|+||+.+..++.+.+ ...++.+..+|
T Consensus 160 ~PQ~iCLaPtrELA~Q~~eVv~-eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk-~id~~kikvfV 237 (477)
T KOG0332|consen 160 VPQCICLAPTRELAPQTGEVVE-EMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLK-CIDLEKIKVFV 237 (477)
T ss_pred CCCceeeCchHHHHHHHHHHHH-HhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHH-hhChhhceEEE
Confidence 3489999999999999999998 688877777766655443222222244899999999988877643 34688999999
Q ss_pred ecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCChh-HHHHHhcCCCCceeecCCCCCccCcEEEEeccc
Q 000129 1470 IDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAK-DLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVD 1548 (2114)
Q Consensus 1470 iDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~-dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~ 1548 (2114)
+|||+.+.+.+|.. ..-..|...++++.|++++|||..... .++.-+-.....++. .-....
T Consensus 238 lDEAD~Mi~tqG~~-----D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~L------------k~eel~ 300 (477)
T KOG0332|consen 238 LDEADVMIDTQGFQ-----DQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIIL------------KREELA 300 (477)
T ss_pred ecchhhhhhccccc-----ccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeee------------ehhhcc
Confidence 99999877655321 111122333478999999999986532 444433222211111 100001
Q ss_pred ccchHHHH--HhcCHHHHHHHHHHh--cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhh
Q 000129 1549 ITNFEARM--QAMTKPTFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQ 1624 (2114)
Q Consensus 1549 ~~~~~~~~--~~~~~~~~~~i~~~l--~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~ 1624 (2114)
........ .......|..+.... ..-+++||||.|++.|..++..+..
T Consensus 301 L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~---------------------------- 352 (477)
T KOG0332|consen 301 LDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRA---------------------------- 352 (477)
T ss_pred ccchhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHh----------------------------
Confidence 11111110 011122344443321 2457899999999999999877633
Q ss_pred HHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCC------
Q 000129 1625 EEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDY------ 1698 (2114)
Q Consensus 1625 d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~------ 1698 (2114)
.++.|..+||.|..++|..+.+.|+.|.-+|||+|++++||+|++.+.+|| +|+.|.
T Consensus 353 -------~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~Vv----------NydlP~~~~~~p 415 (477)
T KOG0332|consen 353 -------EGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVV----------NYDLPVKYTGEP 415 (477)
T ss_pred -------cCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEE----------ecCCccccCCCC
Confidence 366799999999999999999999999999999999999999999999999 665553
Q ss_pred CHhHHHHhHcccCCCCCCCceEEEEEeecCc
Q 000129 1699 PVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1699 s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~ 1729 (2114)
+...|+||+||+||- ++.|.++-|+++.+
T Consensus 416 D~etYlHRiGRtGRF--GkkG~a~n~v~~~~ 444 (477)
T KOG0332|consen 416 DYETYLHRIGRTGRF--GKKGLAINLVDDKD 444 (477)
T ss_pred CHHHHHHHhcccccc--cccceEEEeecccC
Confidence 578999999999995 89999999998765
No 104
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1.4e-33 Score=379.53 Aligned_cols=441 Identities=17% Similarity=0.174 Sum_probs=279.3
Q ss_pred HHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhc-cCCcE
Q 000129 502 RVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVK 580 (2114)
Q Consensus 502 ~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~-~~gi~ 580 (2114)
+.|..++.+++.++|+|+||||||+. +|.+.... +. | ...+|++..|.|-.|.+++.++.+-++ .+|-.
T Consensus 80 ~~Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~-g~---g----~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~ 149 (1294)
T PRK11131 80 QDILEAIRDHQVVIVAGETGSGKTTQ--LPKICLEL-GR---G----VKGLIGHTQPRRLAARTVANRIAEELETELGGC 149 (1294)
T ss_pred HHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHc-CC---C----CCCceeeCCCcHHHHHHHHHHHHHHHhhhhcce
Confidence 44555677778899999999999995 55322111 11 1 122677788976544444444444332 23333
Q ss_pred EEEEeCCCccChhhhccceEEEcCHhHH-HHHHhccCCCcccccccEEEEecccc-ccc-CCchhHHHHHHHHHHHHhhc
Q 000129 581 VRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL-LHD-NRGPVLESIVARTVRQIETT 657 (2114)
Q Consensus 581 v~~l~Gd~~~~~~~~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~-l~d-~rg~~le~iv~rl~~~~~~~ 657 (2114)
|+.- ..++.+....++|+|+||+++ +.+.+ ...++.+++|||||||. +.+ ++ +..++.++ + ..
T Consensus 150 VGY~---vrf~~~~s~~t~I~v~TpG~LL~~l~~----d~~Ls~~~~IIIDEAHERsLn~Df---LLg~Lk~l---L-~~ 215 (1294)
T PRK11131 150 VGYK---VRFNDQVSDNTMVKLMTDGILLAEIQQ----DRLLMQYDTIIIDEAHERSLNIDF---ILGYLKEL---L-PR 215 (1294)
T ss_pred ecee---ecCccccCCCCCEEEEChHHHHHHHhc----CCccccCcEEEecCccccccccch---HHHHHHHh---h-hc
Confidence 3322 233333345799999999986 33332 24689999999999994 443 22 11222222 1 22
Q ss_pred cccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCch---hHHHHHhhHHHHHHHHHHhCCC
Q 000129 658 KEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKP---LQRFQLMNDLCYEKVVAVAGKH 734 (2114)
Q Consensus 658 ~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~ 734 (2114)
.++.|+|+||||++ .+.+++++.. .+++...+...| +...|........ ...+..+...+.. + .....+
T Consensus 216 rpdlKvILmSATid-~e~fs~~F~~---apvI~V~Gr~~p--Vei~y~p~~~~~~~~~~d~l~~ll~~V~~-l-~~~~~G 287 (1294)
T PRK11131 216 RPDLKVIITSATID-PERFSRHFNN---APIIEVSGRTYP--VEVRYRPIVEEADDTERDQLQAIFDAVDE-L-GREGPG 287 (1294)
T ss_pred CCCceEEEeeCCCC-HHHHHHHcCC---CCEEEEcCcccc--ceEEEeecccccchhhHHHHHHHHHHHHH-H-hcCCCC
Confidence 45789999999985 5677777653 234444443334 4444443322111 1111111111111 1 122367
Q ss_pred eEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHH
Q 000129 735 QVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVED 814 (2114)
Q Consensus 735 ~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~ 814 (2114)
++||||+++.++..++..|...+... ..|..+||+|+..+|..+++
T Consensus 288 dILVFLpg~~EIe~lae~L~~~~~~~----------------------------------~~VlpLhg~Ls~~eQ~~Vf~ 333 (1294)
T PRK11131 288 DILIFMSGEREIRDTADALNKLNLRH----------------------------------TEILPLYARLSNSEQNRVFQ 333 (1294)
T ss_pred CEEEEcCCHHHHHHHHHHHHhcCCCc----------------------------------ceEeecccCCCHHHHHHHhc
Confidence 89999999999999999987643211 12566799999999999988
Q ss_pred HHhCCCceEEEechHhhhhcCCCceEEEEecc----eeccCCCCcc----ccCCHHHHHHhhcccCCCCCCCceEEEEEc
Q 000129 815 LFGDGHVQVLVSTATLAWGVNLPAHTVIIKGT----QIYNPEKGAW----TELSPLDIMQMLGRAGRPQYDSYGEGIIIT 886 (2114)
Q Consensus 815 ~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~----~~yd~~~g~~----~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~ 886 (2114)
. .|..+|||||+++++|||+|++++||+.+ ..||+.+|.. .++|..+|.||+|||||. ..|.||.++
T Consensus 334 ~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~---~~G~c~rLy 408 (1294)
T PRK11131 334 S--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV---SEGICIRLY 408 (1294)
T ss_pred c--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC---CCcEEEEeC
Confidence 6 57899999999999999999999999964 5688876532 567889999999999997 479999999
Q ss_pred CCCcHHHHHHhhcCCCcccchhhHhhHHHHHHHHhhccccChHHHHHHHHhhHHHHhhccCCcccCCCcccccccchhhh
Q 000129 887 GHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGE 966 (2114)
Q Consensus 887 ~~~e~~~~~~ll~~~~pies~l~~~l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~ 966 (2114)
+..+.. ++-....| .-+...|...+..-..+| + .++..+ +.++.
T Consensus 409 te~d~~---~~~~~~~P--EIlR~~L~~viL~lk~lg-l--------------------~di~~F----------~fldp 452 (1294)
T PRK11131 409 SEDDFL---SRPEFTDP--EILRTNLASVILQMTALG-L--------------------GDIAAF----------PFVEA 452 (1294)
T ss_pred CHHHHH---hhhcccCC--ccccCCHHHHHHHHHHcC-C--------------------CCccee----------eCCCC
Confidence 875533 22111111 111112222221111111 1 111111 11222
Q ss_pred hhHHHHHHHHHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCCh
Q 000129 967 RRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQ 1046 (2114)
Q Consensus 967 ~~~~li~~al~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~i~s~s~ef~~i~~r~ 1046 (2114)
+-.+.|..|+..|...|+|+.+..++...+|++|+.||.+|++|...++++.+...+|. .+++.|.|+-+. .+...|+
T Consensus 453 P~~~~i~~al~~L~~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~c~-~evl~IaA~Lsv-~dpf~~p 530 (1294)
T PRK11131 453 PDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGCV-REVMIITSALSI-QDPRERP 530 (1294)
T ss_pred CCHHHHHHHHHHHHHCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcCCH-HHHHHHHHHHcC-CCcccCC
Confidence 33467899999999999998654334568999999999999999999999998877776 677777666543 4666777
Q ss_pred hHHHH
Q 000129 1047 DEKME 1051 (2114)
Q Consensus 1047 ~e~~~ 1051 (2114)
.++.+
T Consensus 531 ~~~~~ 535 (1294)
T PRK11131 531 MDKQQ 535 (1294)
T ss_pred chhHH
Confidence 66654
No 105
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-33 Score=329.74 Aligned_cols=342 Identities=21% Similarity=0.297 Sum_probs=266.1
Q ss_pred hhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhc---cCCCceEEEEEcccHHHHH
Q 000129 1329 NPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA---SETGVMRAVYIAPLEALAK 1404 (2114)
Q Consensus 1329 ~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~---~~~~~~k~l~I~Ptr~La~ 1404 (2114)
...+..+.. .|..++|+|.++++..+.+.+ |+-.|-||||||.+|..|++-++... .++.+|..||++|||+||.
T Consensus 232 kqLm~airk~Ey~kptpiq~qalptalsgrd-vigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~ 310 (731)
T KOG0339|consen 232 KQLMTAIRKSEYEKPTPIQCQALPTALSGRD-VIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELAS 310 (731)
T ss_pred HHHHHHHhhhhcccCCccccccccccccccc-chheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHH
Confidence 344555544 499999999999999998777 99999999999999999999998764 2355679999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcCCcccch--hhc-cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCC
Q 000129 1405 ERYRDWEIKFGQGLGMRVVELTGETAMDL--KLL-EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2114)
Q Consensus 1405 q~~~~~~~~f~~~~g~~v~~l~G~~~~~~--~~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g 1481 (2114)
|++.+.+ +|++..|++++.++|+.+.+. +.+ ..+.||||||+++..++.- ....+.++.++|+||++++.+.+
T Consensus 311 Qi~~eaK-kf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~Vkm--Katn~~rvS~LV~DEadrmfdmG- 386 (731)
T KOG0339|consen 311 QIFSEAK-KFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKM--KATNLSRVSYLVLDEADRMFDMG- 386 (731)
T ss_pred HHHHHHH-HhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHh--hcccceeeeEEEEechhhhhccc-
Confidence 9999998 798888999999999887763 233 4569999999999888875 34579999999999999998877
Q ss_pred chHHHHHHHHHHHHhhcCCCceEEEEcccCCC-hhHHHH-HhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhc
Q 000129 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGE-WIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAM 1559 (2114)
Q Consensus 1482 ~~le~i~srl~~i~~~~~~~~riV~lSATl~n-~~dla~-wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~ 1559 (2114)
+...++.|..+..++.|.++||||++- .+.+++ +|+.+ . |.|..++.-....+......+ ..
T Consensus 387 -----fe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dp-V---------rvVqg~vgean~dITQ~V~V~-~s 450 (731)
T KOG0339|consen 387 -----FEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDP-V---------RVVQGEVGEANEDITQTVSVC-PS 450 (731)
T ss_pred -----cHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCC-e---------eEEEeehhccccchhheeeec-cC
Confidence 777888888888999999999999964 233443 34322 1 222111111111111100000 00
Q ss_pred CHHHHHHHHHHh---cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccce
Q 000129 1560 TKPTFTAIVQHA---KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGV 1636 (2114)
Q Consensus 1560 ~~~~~~~i~~~l---~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV 1636 (2114)
....+..++.++ ...+++||||..+..++.++..|. .-++.|
T Consensus 451 ~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lk-----------------------------------lk~~~v 495 (731)
T KOG0339|consen 451 EEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLK-----------------------------------LKGFNV 495 (731)
T ss_pred cHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhc-----------------------------------ccccee
Confidence 111122222222 456899999999999988886651 235679
Q ss_pred EeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCC
Q 000129 1637 GYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLD 1716 (2114)
Q Consensus 1637 ~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~ 1716 (2114)
..+||+|.+.+|..++..|+.+...|||+|+++++|+|+|.+..|| ++++-.++..+.||+||+||. +
T Consensus 496 ~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVv----------nyD~ardIdththrigrtgRa--g 563 (731)
T KOG0339|consen 496 SLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVV----------NYDFARDIDTHTHRIGRTGRA--G 563 (731)
T ss_pred eeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceee----------cccccchhHHHHHHhhhcccc--c
Confidence 9999999999999999999999999999999999999999999999 899999999999999999999 5
Q ss_pred CceEEEEEeecCcHHHHHHHHH
Q 000129 1717 NSGKCVILCHAPRKEYYKKFLR 1738 (2114)
Q Consensus 1717 ~~G~~iil~~~~~~~~~~~~lR 1738 (2114)
..|.++.++++.+.++.-.+++
T Consensus 564 ~kGvayTlvTeKDa~fAG~LVn 585 (731)
T KOG0339|consen 564 EKGVAYTLVTEKDAEFAGHLVN 585 (731)
T ss_pred ccceeeEEechhhHHHhhHHHH
Confidence 6799999999988876655553
No 106
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=1.8e-32 Score=368.59 Aligned_cols=313 Identities=18% Similarity=0.262 Sum_probs=231.9
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHcC-----CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHH
Q 000129 1332 YEALYQGFKHFNPIQTQVFTVLYNT-----DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKER 1406 (2114)
Q Consensus 1332 ~~~l~~gf~~~~~iQ~q~~~~il~~-----~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~ 1406 (2114)
+...|+ | .+||+|.+|++.++++ ..+++++||||||||.+|++|++..+.. +. +++|++||++||.|+
T Consensus 444 ~~~~~~-f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~---g~--qvlvLvPT~~LA~Q~ 516 (926)
T TIGR00580 444 FEDSFP-F-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD---GK--QVAVLVPTTLLAQQH 516 (926)
T ss_pred HHHhCC-C-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---CC--eEEEEeCcHHHHHHH
Confidence 444443 7 5999999999999874 3579999999999999999999988765 34 999999999999999
Q ss_pred HHHHHHHhcCCCCcEEEEEcCCcccc-----hhhcc--CCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCC
Q 000129 1407 YRDWEIKFGQGLGMRVVELTGETAMD-----LKLLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479 (2114)
Q Consensus 1407 ~~~~~~~f~~~~g~~v~~l~G~~~~~-----~~~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~ 1479 (2114)
++.|++.|+. .++++..++|..+.. .+.+. ..+|||+||.. +. ....+++++++||||+|+++..
T Consensus 517 ~~~f~~~~~~-~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l~---~~v~f~~L~llVIDEahrfgv~ 588 (926)
T TIGR00580 517 FETFKERFAN-FPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----LQ---KDVKFKDLGLLIIDEEQRFGVK 588 (926)
T ss_pred HHHHHHHhcc-CCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----hh---CCCCcccCCEEEeecccccchh
Confidence 9999987776 488999999876543 12222 45999999953 22 2346789999999999986421
Q ss_pred CCchHHHHHHHHHHHHhhcCCCceEEEEcccCCChhHHHHH-hcCCCCceeecCCCCCccCcEEEEecccccchHHHHHh
Q 000129 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEW-IGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQA 1558 (2114)
Q Consensus 1480 ~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~dla~w-l~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~ 1558 (2114)
....+ .....+.++++||||+. .+.+... .+.....++...|..| .++..++..+. .
T Consensus 589 -------~~~~L----~~~~~~~~vL~~SATpi-prtl~~~l~g~~d~s~I~~~p~~R-~~V~t~v~~~~-----~---- 646 (926)
T TIGR00580 589 -------QKEKL----KELRTSVDVLTLSATPI-PRTLHMSMSGIRDLSIIATPPEDR-LPVRTFVMEYD-----P---- 646 (926)
T ss_pred -------HHHHH----HhcCCCCCEEEEecCCC-HHHHHHHHhcCCCcEEEecCCCCc-cceEEEEEecC-----H----
Confidence 11222 23356789999999963 4444332 3433333444333333 23444333221 0
Q ss_pred cCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEe
Q 000129 1559 MTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGY 1638 (2114)
Q Consensus 1559 ~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~ 1638 (2114)
......+...+..+++++||||+++.+..++..|.... ....|+.
T Consensus 647 --~~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~---------------------------------p~~~v~~ 691 (926)
T TIGR00580 647 --ELVREAIRRELLRGGQVFYVHNRIESIEKLATQLRELV---------------------------------PEARIAI 691 (926)
T ss_pred --HHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhC---------------------------------CCCeEEE
Confidence 12233444555678999999999999988886663311 1346899
Q ss_pred ecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCC-CCHhHHHHhHcccCCCCCCC
Q 000129 1639 LHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTD-YPVTDLLQMMGHASRPLLDN 1717 (2114)
Q Consensus 1639 ~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~-~s~~~~lQr~GRAGR~~~~~ 1717 (2114)
+||+|++.+|..+++.|++|+++|||||+++++|+|+|++++|| .++.| ++..+|.||+||+||. +.
T Consensus 692 lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VI----------i~~a~~~gls~l~Qr~GRvGR~--g~ 759 (926)
T TIGR00580 692 AHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTII----------IERADKFGLAQLYQLRGRVGRS--KK 759 (926)
T ss_pred ecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEE----------EecCCCCCHHHHHHHhcCCCCC--CC
Confidence 99999999999999999999999999999999999999998888 33333 4678999999999998 68
Q ss_pred ceEEEEEeecC
Q 000129 1718 SGKCVILCHAP 1728 (2114)
Q Consensus 1718 ~G~~iil~~~~ 1728 (2114)
.|.|++++...
T Consensus 760 ~g~aill~~~~ 770 (926)
T TIGR00580 760 KAYAYLLYPHQ 770 (926)
T ss_pred CeEEEEEECCc
Confidence 99999998754
No 107
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-33 Score=324.90 Aligned_cols=338 Identities=19% Similarity=0.261 Sum_probs=248.9
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccC----CCceEEEEEcccHH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE----TGVMRAVYIAPLEA 1401 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~----~~~~k~l~I~Ptr~ 1401 (2114)
|....++++-. ||..||-||+.||+.++++.+ ++..|.||||||.+|++|+++.+..... ..++.+++++|||+
T Consensus 26 LD~RllkAi~~lG~ekpTlIQs~aIplaLEgKD-vvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkE 104 (569)
T KOG0346|consen 26 LDSRLLKAITKLGWEKPTLIQSSAIPLALEGKD-VVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKE 104 (569)
T ss_pred CCHHHHHHHHHhCcCCcchhhhcccchhhcCcc-eeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHH
Confidence 34455566655 899999999999999999775 9999999999999999999999876422 22468999999999
Q ss_pred HHHHHHHHHHHHhcCCC--CcEEEEEcCCcccc---hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccc
Q 000129 1402 LAKERYRDWEIKFGQGL--GMRVVELTGETAMD---LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 1476 (2114)
Q Consensus 1402 La~q~~~~~~~~f~~~~--g~~v~~l~G~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l 1476 (2114)
||.|+|+.+. ++.... .+++.-++.+.+.. ......++|+|+||+++..++... ....+..++++|+||||++
T Consensus 105 L~qQvy~vie-kL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~-~~~~~~~l~~LVvDEADLl 182 (569)
T KOG0346|consen 105 LAQQVYKVIE-KLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAG-VLEYLDSLSFLVVDEADLL 182 (569)
T ss_pred HHHHHHHHHH-HHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhc-cchhhhheeeEEechhhhh
Confidence 9999999988 444332 24454455433322 334567799999999988776542 1256888999999999999
Q ss_pred cCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHHHhcCCCCceeecCCCCCccC--cEEEEecccccchH
Q 000129 1477 GGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVP--LEIHIQGVDITNFE 1553 (2114)
Q Consensus 1477 ~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~wl~~~~~~~~~f~~~~rpv~--l~~~~~~~~~~~~~ 1553 (2114)
.+-+ +-..|+.+.+.+++..|.++||||+.+. ..+...+-..+ .+..+....-|.| +..+..... ..
T Consensus 183 lsfG------Yeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nP-viLkl~e~el~~~dqL~Qy~v~cs--e~- 252 (569)
T KOG0346|consen 183 LSFG------YEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNP-VILKLTEGELPNPDQLTQYQVKCS--EE- 252 (569)
T ss_pred hhcc------cHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCC-eEEEeccccCCCcccceEEEEEec--cc-
Confidence 8655 5566777778889999999999999652 23444333332 3444444443433 222221111 11
Q ss_pred HHHHhcCHHHHH-HHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHh
Q 000129 1554 ARMQAMTKPTFT-AIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL 1632 (2114)
Q Consensus 1554 ~~~~~~~~~~~~-~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l 1632 (2114)
.+.+.. ++++.---.+++||||||...|..+-..|. ..
T Consensus 253 ------DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLe-----------------------------------qF 291 (569)
T KOG0346|consen 253 ------DKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLE-----------------------------------QF 291 (569)
T ss_pred ------hhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHH-----------------------------------Hh
Confidence 111111 111111236889999999999977764442 23
Q ss_pred ccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCc-----------------------------------cccccCCCC
Q 000129 1633 RHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSS-----------------------------------MCWGVPLTA 1677 (2114)
Q Consensus 1633 ~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~-----------------------------------la~Gvdip~ 1677 (2114)
+...+++.|.|+..-|-.+++.|..|..+++|||+. .+||||+..
T Consensus 292 GiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~ 371 (569)
T KOG0346|consen 292 GIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHH 371 (569)
T ss_pred CcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchh
Confidence 334578899999999999999999999999999981 569999999
Q ss_pred cEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcH
Q 000129 1678 HLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRK 1730 (2114)
Q Consensus 1678 ~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~ 1730 (2114)
+..|+ |+++|.++..|+||+||++|+ +.+|.++.|+.+.+.
T Consensus 372 V~~Vl----------NFD~P~t~~sYIHRvGRTaRg--~n~GtalSfv~P~e~ 412 (569)
T KOG0346|consen 372 VSNVL----------NFDFPETVTSYIHRVGRTARG--NNKGTALSFVSPKEE 412 (569)
T ss_pred eeeee----------ecCCCCchHHHHHhccccccC--CCCCceEEEecchHH
Confidence 99999 999999999999999999998 789999999987654
No 108
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=8e-33 Score=371.93 Aligned_cols=310 Identities=20% Similarity=0.248 Sum_probs=227.8
Q ss_pred CCCCCCCHHHHHHHHHHHcC-----CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSS-----ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE 565 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~-----~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q 565 (2114)
.+| +||++|.+|++.++.+ ..++|+|||||||||.+|+++++..+..+ .+++|++||++||.|
T Consensus 448 ~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g-----------~qvlvLvPT~~LA~Q 515 (926)
T TIGR00580 448 FPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG-----------KQVAVLVPTTLLAQQ 515 (926)
T ss_pred CCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC-----------CeEEEEeCcHHHHHH
Confidence 357 5999999999999875 24699999999999999999999887643 389999999999999
Q ss_pred HHHHHHHhhccCCcEEEEEeCCCccChhh-------hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccC
Q 000129 566 VVGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDN 638 (2114)
Q Consensus 566 ~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~ 638 (2114)
+++.|++++..+++++..++|..+...+. .+.++|||+||. .+.+ ...++++++|||||+|+++
T Consensus 516 ~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~---ll~~----~v~f~~L~llVIDEahrfg-- 586 (926)
T TIGR00580 516 HFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHK---LLQK----DVKFKDLGLLIIDEEQRFG-- 586 (926)
T ss_pred HHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHH---HhhC----CCCcccCCEEEeecccccc--
Confidence 99999999999999999999976643321 135899999995 2322 2457889999999999853
Q ss_pred CchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHH
Q 000129 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQL 718 (2114)
Q Consensus 639 rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~ 718 (2114)
......+ .....++++++||||+ ....+...+.... .............++...+.... . .
T Consensus 587 --v~~~~~L-------~~~~~~~~vL~~SATp-iprtl~~~l~g~~-d~s~I~~~p~~R~~V~t~v~~~~---~----~- 647 (926)
T TIGR00580 587 --VKQKEKL-------KELRTSVDVLTLSATP-IPRTLHMSMSGIR-DLSIIATPPEDRLPVRTFVMEYD---P----E- 647 (926)
T ss_pred --hhHHHHH-------HhcCCCCCEEEEecCC-CHHHHHHHHhcCC-CcEEEecCCCCccceEEEEEecC---H----H-
Confidence 2222222 2245678999999994 4455544332221 11111111111123333222111 1 1
Q ss_pred hhHHHHHHHH-HHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCce
Q 000129 719 MNDLCYEKVV-AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGF 797 (2114)
Q Consensus 719 ~~~~~~~~i~-~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv 797 (2114)
.+...+. +...+++++|||++++.+..++..|..... ...+
T Consensus 648 ---~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p-----------------------------------~~~v 689 (926)
T TIGR00580 648 ---LVREAIRRELLRGGQVFYVHNRIESIEKLATQLRELVP-----------------------------------EARI 689 (926)
T ss_pred ---HHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCC-----------------------------------CCeE
Confidence 1111121 223478999999999999999888875321 1347
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCC
Q 000129 798 AIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD 877 (2114)
Q Consensus 798 ~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d 877 (2114)
+.+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||. ++++. ++..+|+||+||+||.|
T Consensus 690 ~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi----~~a~~-----~gls~l~Qr~GRvGR~g-- 758 (926)
T TIGR00580 690 AIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIII----ERADK-----FGLAQLYQLRGRVGRSK-- 758 (926)
T ss_pred EEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEE----ecCCC-----CCHHHHHHHhcCCCCCC--
Confidence 88999999999999999999999999999999999999999999997 66543 36678999999999987
Q ss_pred CceEEEEEcCCC
Q 000129 878 SYGEGIIITGHS 889 (2114)
Q Consensus 878 ~~G~~iil~~~~ 889 (2114)
..|.||+++...
T Consensus 759 ~~g~aill~~~~ 770 (926)
T TIGR00580 759 KKAYAYLLYPHQ 770 (926)
T ss_pred CCeEEEEEECCc
Confidence 789999998764
No 109
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-33 Score=323.70 Aligned_cols=341 Identities=18% Similarity=0.272 Sum_probs=250.9
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
|++.+..+. .||.+||-||+.|||-++++.+ ++..|-||||||.+|++|+++.+......+ ....++.+++++||
T Consensus 26 LD~RllkAi~~lG~ekpTlIQs~aIplaLEgKD-vvarArTGSGKT~AYliPllqkll~~k~t~--~~e~~~sa~iLvPT 102 (569)
T KOG0346|consen 26 LDSRLLKAITKLGWEKPTLIQSSAIPLALEGKD-VVARARTGSGKTAAYLIPLLQKLLAEKKTN--DGEQGPSAVILVPT 102 (569)
T ss_pred CCHHHHHHHHHhCcCCcchhhhcccchhhcCcc-eeeeeccCCCchHHHHHHHHHHHHHhhhcc--cccccceeEEEech
Confidence 445555555 5999999999999999999875 999999999999999999999998765432 23456789999999
Q ss_pred HHHHHHHHHHHHHhhccC--CcEEEEEeCCCccChh---hhccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccc
Q 000129 560 KALVAEVVGNLSNRLQMY--DVKVRELSGDQTLTRQ---QIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIH 633 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~--gi~v~~l~Gd~~~~~~---~~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH 633 (2114)
|+||+|++..+.++.... .+++.-++.+++.+.. ....++|+|+||.++ ..+.-.. ...+..+.++|+||||
T Consensus 103 kEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~--~~~~~~l~~LVvDEAD 180 (569)
T KOG0346|consen 103 KELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGV--LEYLDSLSFLVVDEAD 180 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhcc--chhhhheeeEEechhh
Confidence 999999999998876544 3555555555544332 246899999999996 3333322 2577889999999999
Q ss_pred cccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCce-EeecCCcc--cccceeEEEeecc
Q 000129 634 LLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGL-FYFDNSYR--PVPLSQQYIGIQV 709 (2114)
Q Consensus 634 ~l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~-~~f~~~~r--pv~l~~~~~~~~~ 709 (2114)
++.. ++...+..+. ...++..|.++||||+. +|+...-......++ .-+....- |-.+.|.++.+.+
T Consensus 181 LllsfGYeedlk~l~-------~~LPr~~Q~~LmSATl~--dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse 251 (569)
T KOG0346|consen 181 LLLSFGYEEDLKKLR-------SHLPRIYQCFLMSATLS--DDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSE 251 (569)
T ss_pred hhhhcccHHHHHHHH-------HhCCchhhheeehhhhh--hHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEecc
Confidence 9986 4444444333 34577889999999997 455544333222222 23333333 3456666665553
Q ss_pred CchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchh
Q 000129 710 KKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDL 789 (2114)
Q Consensus 710 ~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L 789 (2114)
... +.. +|..+.-..-.+++||||||...|.++--.|...|+...
T Consensus 252 ~DK---fll----lyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksc---------------------------- 296 (569)
T KOG0346|consen 252 EDK---FLL----LYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSC---------------------------- 296 (569)
T ss_pred chh---HHH----HHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhh----------------------------
Confidence 322 211 222221122268999999999999999988887765542
Q ss_pred hhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEech-----------------------------------Hhhhhc
Q 000129 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTA-----------------------------------TLAWGV 834 (2114)
Q Consensus 790 ~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~-----------------------------------tla~GV 834 (2114)
+++|.|+..-|-.+++.|..|..+++|||+ -.+|||
T Consensus 297 ---------iLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGI 367 (569)
T KOG0346|consen 297 ---------ILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGI 367 (569)
T ss_pred ---------hhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccc
Confidence 348999999999999999999999999999 147999
Q ss_pred CCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcHH
Q 000129 835 NLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR 892 (2114)
Q Consensus 835 dlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~ 892 (2114)
|+..|..||| ||.+. +...|+||+||++|++ ++|.++-++.+.+..
T Consensus 368 DF~~V~~VlN----FD~P~------t~~sYIHRvGRTaRg~--n~GtalSfv~P~e~~ 413 (569)
T KOG0346|consen 368 DFHHVSNVLN----FDFPE------TVTSYIHRVGRTARGN--NKGTALSFVSPKEEF 413 (569)
T ss_pred cchheeeeee----cCCCC------chHHHHHhccccccCC--CCCceEEEecchHHh
Confidence 9999999999 66554 6678999999999977 789999998886643
No 110
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=8.8e-33 Score=373.73 Aligned_cols=441 Identities=17% Similarity=0.184 Sum_probs=288.3
Q ss_pred HHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEE
Q 000129 502 RVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKV 581 (2114)
Q Consensus 502 ~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v 581 (2114)
..|..++.+++.++|+||||||||+.....++.. +. + ...+|++..|.|--|..++.++.+.+ |..+
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~---~~---~----~~~~I~~tQPRRlAA~svA~RvA~el---g~~l 139 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTTQLPKICLEL---GR---G----SHGLIGHTQPRRLAARTVAQRIAEEL---GTPL 139 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHc---CC---C----CCceEecCCccHHHHHHHHHHHHHHh---CCCc
Confidence 4455667778889999999999999654433321 11 1 12378899999999999998888755 4556
Q ss_pred EEEeCC-CccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccc-cccCCchhHHHHHHHHHHHHhhccc
Q 000129 582 RELSGD-QTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL-LHDNRGPVLESIVARTVRQIETTKE 659 (2114)
Q Consensus 582 ~~l~Gd-~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~-l~d~rg~~le~iv~rl~~~~~~~~~ 659 (2114)
+...|. ..++.+...++.|+|+||+.+ ++.......++.+++|||||||. ..+ .+.++..+...+ ...+
T Consensus 140 G~~VGY~vR~~~~~s~~T~I~~~TdGiL---Lr~l~~d~~L~~~~~IIIDEaHERsL~-----~D~LL~lLk~il-~~rp 210 (1283)
T TIGR01967 140 GEKVGYKVRFHDQVSSNTLVKLMTDGIL---LAETQQDRFLSRYDTIIIDEAHERSLN-----IDFLLGYLKQLL-PRRP 210 (1283)
T ss_pred ceEEeeEEcCCcccCCCceeeeccccHH---HHHhhhCcccccCcEEEEcCcchhhcc-----chhHHHHHHHHH-hhCC
Confidence 666662 344444456799999999975 33322335689999999999993 333 222222222222 2346
Q ss_pred cccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCc---hhHHHHHhhHHHHHHHHHHhCCCeE
Q 000129 660 HIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKK---PLQRFQLMNDLCYEKVVAVAGKHQV 736 (2114)
Q Consensus 660 ~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~v 736 (2114)
+.|+|+||||++ .+.+++++... +++...+...|+ ...|....... .......+...+.. +.. ...+++
T Consensus 211 dLKlIlmSATld-~~~fa~~F~~a---pvI~V~Gr~~PV--ev~Y~~~~~~~~~~~~~~~~~i~~~I~~-l~~-~~~GdI 282 (1283)
T TIGR01967 211 DLKIIITSATID-PERFSRHFNNA---PIIEVSGRTYPV--EVRYRPLVEEQEDDDLDQLEAILDAVDE-LFA-EGPGDI 282 (1283)
T ss_pred CCeEEEEeCCcC-HHHHHHHhcCC---CEEEECCCcccc--eeEEecccccccchhhhHHHHHHHHHHH-HHh-hCCCCE
Confidence 889999999984 67788887532 344444433344 44443322111 11112222222222 111 136799
Q ss_pred EEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHH
Q 000129 737 LIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLF 816 (2114)
Q Consensus 737 LVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F 816 (2114)
|||+++++++..++..|...+.. ...|..+||+|+.++|..+++.+
T Consensus 283 LVFLpg~~EI~~l~~~L~~~~~~----------------------------------~~~VlpLhg~Ls~~eQ~~vf~~~ 328 (1283)
T TIGR01967 283 LIFLPGEREIRDAAEILRKRNLR----------------------------------HTEILPLYARLSNKEQQRVFQPH 328 (1283)
T ss_pred EEeCCCHHHHHHHHHHHHhcCCC----------------------------------CcEEEeccCCCCHHHHHHHhCCC
Confidence 99999999999999998764311 01256789999999999986654
Q ss_pred hCCCceEEEechHhhhhcCCCceEEEEecc----eeccCCCCcc----ccCCHHHHHHhhcccCCCCCCCceEEEEEcCC
Q 000129 817 GDGHVQVLVSTATLAWGVNLPAHTVIIKGT----QIYNPEKGAW----TELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2114)
Q Consensus 817 ~~g~i~VLVaT~tla~GVdlP~v~vVI~~~----~~yd~~~g~~----~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2114)
+..+|||||+++++|||+|++++||+.+ ..||+.+|.. .++|..+|.||+|||||.| .|.||.+++.
T Consensus 329 --~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte 403 (1283)
T TIGR01967 329 --SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSE 403 (1283)
T ss_pred --CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCH
Confidence 3479999999999999999999999965 4578776643 5689999999999999985 8999999987
Q ss_pred CcHHHHHHhhcCCCcccchhhHhhHHHHHHHHhhccccChHHHHHHHHhhHHHHhhccCCcccCCCcccccccchhhhhh
Q 000129 889 SELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERR 968 (2114)
Q Consensus 889 ~e~~~~~~ll~~~~pies~l~~~l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~ 968 (2114)
.+... +.....| | -+...|...+..-...| + .++..+ +.++.+.
T Consensus 404 ~~~~~---~~~~~~P-E-IlR~~L~~viL~l~~lg-~--------------------~di~~f----------~fldpP~ 447 (1283)
T TIGR01967 404 EDFNS---RPEFTDP-E-ILRTNLASVILQMLALR-L--------------------GDIAAF----------PFIEAPD 447 (1283)
T ss_pred HHHHh---hhhccCc-c-cccccHHHHHHHHHhcC-C--------------------CCcccc----------cCCCCCC
Confidence 65432 2111112 1 01111222111111111 1 111111 1223333
Q ss_pred HHHHHHHHHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChhH
Q 000129 969 ADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDE 1048 (2114)
Q Consensus 969 ~~li~~al~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~i~s~s~ef~~i~~r~~e 1048 (2114)
...|..|+..|...|+|+.+. +...+|++|+.||.++++|...++++.+...+|. .+++.|.|+-++ .++..|+.+
T Consensus 448 ~~~i~~A~~~L~~LGAld~~~--~~~~LT~lGr~ma~LPldPrlarmLl~a~~~gcl-~e~l~IaA~Ls~-~dp~~~p~~ 523 (1283)
T TIGR01967 448 PRAIRDGFRLLEELGALDDDE--AEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGCL-QEVLIIASALSI-QDPRERPME 523 (1283)
T ss_pred HHHHHHHHHHHHHCCCCCCCC--CCccccHHHHHHhhcCCChHHHHHHHHhhhcCCH-HHHHHHHHHHcC-CCcCCCcch
Confidence 467899999999999997442 3368999999999999999999999988777765 667777776554 456666555
Q ss_pred HHH
Q 000129 1049 KME 1051 (2114)
Q Consensus 1049 ~~~ 1051 (2114)
+.+
T Consensus 524 ~~~ 526 (1283)
T TIGR01967 524 KQQ 526 (1283)
T ss_pred hHH
Confidence 443
No 111
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=5.7e-35 Score=330.31 Aligned_cols=388 Identities=19% Similarity=0.274 Sum_probs=278.6
Q ss_pred EEEEEeccCCCCCCeEEEEEecccccc-CcccccccccccCCCCCCCCCCccCCCCCCcccccChhHHHHHhc-CCCCCC
Q 000129 1266 SLNFTVPIYEPLPPQYFIRVVSDKWLG-SQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQ-GFKHFN 1343 (2114)
Q Consensus 1266 ~~~f~vp~~~p~p~~y~v~~vSD~wl~-~e~~~~is~~~l~lp~~~~~~t~lldl~p~~~~~L~~~~~~~l~~-gf~~~~ 1343 (2114)
-++++-|+...+.|.-+|+-+|..-.. ....+.|...+-.+|+ | +..+.-..++.+.++.+-. |+.+||
T Consensus 124 Gi~Y~ePi~T~WkPP~hir~mS~e~~e~vRk~~~I~veGd~ipP----P-----IksF~eMKFP~~~L~~lk~KGI~~PT 194 (610)
T KOG0341|consen 124 GITYEEPIKTAWKPPRHIRKMSEEQRELVRKQLHILVEGDDIPP----P-----IKSFKEMKFPKPLLRGLKKKGIVHPT 194 (610)
T ss_pred CCcccCcchhccCCcHHHHHhhHHHHHHHHHhheEEeeCCCCCC----c-----hhhhhhccCCHHHHHHHHhcCCCCCC
Confidence 466777888887777778777764222 2223344433333332 1 1222223344556666654 799999
Q ss_pred HHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhc------cCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1344 PIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA------SETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1344 ~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~------~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
|||.|-++.++.+++ .+-.|-||||||++|.||++-...+. ..+.++-.++|+|+|+||.|++.-+...+...
T Consensus 195 pIQvQGlPvvLsGRD-mIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L 273 (610)
T KOG0341|consen 195 PIQVQGLPVVLSGRD-MIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAAL 273 (610)
T ss_pred ceeecCcceEeecCc-eeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999877 99999999999999999987654432 12335689999999999999998776433321
Q ss_pred -----CCcEEEEEcCCcccc--hhhccCC-cEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHH
Q 000129 1418 -----LGMRVVELTGETAMD--LKLLEKG-QIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVS 1489 (2114)
Q Consensus 1418 -----~g~~v~~l~G~~~~~--~~~l~~~-~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~s 1489 (2114)
..++...+.|+.+.. ...+..+ ||+|+||+++..++.+ ....+.-.+++.+|||+++.+.+ +-.
T Consensus 274 ~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~K--K~~sLd~CRyL~lDEADRmiDmG------FEd 345 (610)
T KOG0341|consen 274 QEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAK--KIMSLDACRYLTLDEADRMIDMG------FED 345 (610)
T ss_pred HhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHH--hhccHHHHHHhhhhhHHHHhhcc------chh
Confidence 235677788887765 4445555 9999999999888765 34467788999999999998776 555
Q ss_pred HHHHHHhhcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHH---HhcCHHHHHH
Q 000129 1490 RMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARM---QAMTKPTFTA 1566 (2114)
Q Consensus 1490 rl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~---~~~~~~~~~~ 1566 (2114)
.++.+...+....|.++||||+|.. +..|.. +.-+.|+.+.+.-.+....+..... ..-++-+ .
T Consensus 346 dir~iF~~FK~QRQTLLFSATMP~K--IQ~FAk---------SALVKPvtvNVGRAGAAsldViQevEyVkqEaKiV--y 412 (610)
T KOG0341|consen 346 DIRTIFSFFKGQRQTLLFSATMPKK--IQNFAK---------SALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIV--Y 412 (610)
T ss_pred hHHHHHHHHhhhhheeeeeccccHH--HHHHHH---------hhcccceEEecccccccchhHHHHHHHHHhhhhhh--h
Confidence 6666666667788999999999753 222221 1233555555544333222222221 1122222 2
Q ss_pred HHHHhc-CCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCH
Q 000129 1567 IVQHAK-NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNK 1645 (2114)
Q Consensus 1567 i~~~l~-~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~ 1645 (2114)
++..+. ...|+||||..+..+..+...|.- -+..+..+|||-.+
T Consensus 413 lLeCLQKT~PpVLIFaEkK~DVD~IhEYLLl-----------------------------------KGVEavaIHGGKDQ 457 (610)
T KOG0341|consen 413 LLECLQKTSPPVLIFAEKKADVDDIHEYLLL-----------------------------------KGVEAVAIHGGKDQ 457 (610)
T ss_pred HHHHhccCCCceEEEeccccChHHHHHHHHH-----------------------------------ccceeEEeecCcch
Confidence 333333 456799999999888777765521 12236789999999
Q ss_pred HHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEe
Q 000129 1646 TDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILC 1725 (2114)
Q Consensus 1646 ~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~ 1725 (2114)
++|...++.|+.|+-+|||||++++.|+|+|++.+|| ||++|-.+.+|+||+||+||. +..|.+..|.
T Consensus 458 edR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVI----------NyDMP~eIENYVHRIGRTGRs--g~~GiATTfI 525 (610)
T KOG0341|consen 458 EDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVI----------NYDMPEEIENYVHRIGRTGRS--GKTGIATTFI 525 (610)
T ss_pred hHHHHHHHHHhcCCCceEEEecchhccCCCccchhhc----------cCCChHHHHHHHHHhcccCCC--CCcceeeeee
Confidence 9999999999999999999999999999999999999 999999999999999999998 7899999999
Q ss_pred ecCcHH
Q 000129 1726 HAPRKE 1731 (2114)
Q Consensus 1726 ~~~~~~ 1731 (2114)
+....+
T Consensus 526 NK~~~e 531 (610)
T KOG0341|consen 526 NKNQEE 531 (610)
T ss_pred cccchH
Confidence 877544
No 112
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=5.8e-34 Score=339.69 Aligned_cols=330 Identities=18% Similarity=0.249 Sum_probs=253.0
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.+|..|++||.+|||.++.+-+ +||.|..|+|||++|...+++.+... ...+++++++|||++|.|+...+
T Consensus 43 n~f~~ptkiQaaAIP~~~~kmD-liVQaKSGTGKTlVfsv~av~sl~~~--------~~~~q~~Iv~PTREiaVQI~~tv 113 (980)
T KOG4284|consen 43 NAFALPTKIQAAAIPAIFSKMD-LIVQAKSGTGKTLVFSVLAVESLDSR--------SSHIQKVIVTPTREIAVQIKETV 113 (980)
T ss_pred hcccCCCchhhhhhhhhhcccc-eEEEecCCCCceEEEEeeeehhcCcc--------cCcceeEEEecchhhhhHHHHHH
Confidence 4889999999999999998877 99999999999999999888877543 24568999999999999999999
Q ss_pred HHhhcc-CCcEEEEEeCCCccChh--hhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc--CCchhHHH
Q 000129 571 SNRLQM-YDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD--NRGPVLES 645 (2114)
Q Consensus 571 ~~~~~~-~gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d--~rg~~le~ 645 (2114)
.+.... .|.++..+.|++..... .++.++|+|+||+++..|..... ...+.++|+|+|||+.|.+ .+...+..
T Consensus 114 ~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~--~n~s~vrlfVLDEADkL~~t~sfq~~In~ 191 (980)
T KOG4284|consen 114 RKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGA--MNMSHVRLFVLDEADKLMDTESFQDDINI 191 (980)
T ss_pred HHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcC--CCccceeEEEeccHHhhhchhhHHHHHHH
Confidence 987763 48999999999876654 46789999999999866655432 5678899999999999987 35566655
Q ss_pred HHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCccc--ccceeEEEeeccC-chhHHHHHhhHH
Q 000129 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRP--VPLSQQYIGIQVK-KPLQRFQLMNDL 722 (2114)
Q Consensus 646 iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rp--v~l~~~~~~~~~~-~~~~~~~~~~~~ 722 (2114)
|+.. ++...|++++|||-|. -+++.|...+.++.++--+.--+ ..+.|.++..... .....+..+.+.
T Consensus 192 ii~s-------lP~~rQv~a~SATYp~--nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~ 262 (980)
T KOG4284|consen 192 IINS-------LPQIRQVAAFSATYPR--NLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQK 262 (980)
T ss_pred HHHh-------cchhheeeEEeccCch--hHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHH
Confidence 5544 4678899999999983 34444433333444432222222 2344444433322 222333333222
Q ss_pred HHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecC
Q 000129 723 CYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHA 802 (2114)
Q Consensus 723 ~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHa 802 (2114)
...+....+-.|.||||+....|+.+|..|...|+.+ .+..|
T Consensus 263 -L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~-------------------------------------~~ISg 304 (980)
T KOG4284|consen 263 -LTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDV-------------------------------------TFISG 304 (980)
T ss_pred -HHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCe-------------------------------------EEecc
Confidence 2345555667799999999999999999998877554 34589
Q ss_pred CCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEE
Q 000129 803 GMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEG 882 (2114)
Q Consensus 803 gl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~ 882 (2114)
.|++.+|..+++.++.-..+|||+|+..+||||-|.+++|||-+.|. ....|+||+|||||-| ..|.+
T Consensus 305 aM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~----------d~eTY~HRIGRAgRFG--~~G~a 372 (980)
T KOG4284|consen 305 AMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPA----------DEETYFHRIGRAGRFG--AHGAA 372 (980)
T ss_pred ccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCc----------chHHHHHHhhhccccc--cccee
Confidence 99999999999999999999999999999999999999999944444 4557999999999965 88999
Q ss_pred EEEcCCCc
Q 000129 883 IIITGHSE 890 (2114)
Q Consensus 883 iil~~~~e 890 (2114)
|.++...+
T Consensus 373 VT~~~~~~ 380 (980)
T KOG4284|consen 373 VTLLEDER 380 (980)
T ss_pred EEEeccch
Confidence 99887754
No 113
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.4e-33 Score=354.44 Aligned_cols=362 Identities=21% Similarity=0.339 Sum_probs=275.1
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.||..++|||.+|||.++.+.+ ||.+|-||||||++|+||+++++...+... ...++.+|+++||++|+.|+.+.+
T Consensus 383 l~y~k~~~IQ~qAiP~ImsGrd-vIgvakTgSGKT~af~LPmirhi~dQr~~~---~gdGPi~li~aPtrela~QI~r~~ 458 (997)
T KOG0334|consen 383 LGYEKPTPIQAQAIPAIMSGRD-VIGVAKTGSGKTLAFLLPMIRHIKDQRPLE---EGDGPIALILAPTRELAMQIHREV 458 (997)
T ss_pred hcCCCCcchhhhhcchhccCcc-eEEeeccCCccchhhhcchhhhhhcCCChh---hCCCceEEEEcCCHHHHHHHHHHH
Confidence 3899999999999999998877 999999999999999999998887654322 225789999999999999999999
Q ss_pred HHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccccccc-CCchhHHH
Q 000129 571 SNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLES 645 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~ 645 (2114)
..++..+|+++..++|+...+.+. ...+.|+||||+++ |.+.-..+....+.++-++|+||+|.|.| .+-|..-.
T Consensus 459 ~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~ 538 (997)
T KOG0334|consen 459 RKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITR 538 (997)
T ss_pred HHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccch
Confidence 999999999999999998877653 35699999999996 88887777667778888999999999998 68888776
Q ss_pred HHHHHHHHHhhccccccEEEEccccCC-hHHHHHHHhccccCceEeecCCcc-cccceeEEEeeccCchhHHHHHhhHHH
Q 000129 646 IVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYR-PVPLSQQYIGIQVKKPLQRFQLMNDLC 723 (2114)
Q Consensus 646 iv~rl~~~~~~~~~~~riv~lSATlpn-~~dva~~l~~~~~~~~~~f~~~~r-pv~l~~~~~~~~~~~~~~~~~~~~~~~ 723 (2114)
|+..+ ++..|.+++|||+|. .+.++.-....|.. ..+...-. .-.+.+.+..... ...++..+.+
T Consensus 539 Ii~nl-------rpdrQtvlfSatfpr~m~~la~~vl~~Pve--iiv~~~svV~k~V~q~v~V~~~--e~eKf~kL~e-- 605 (997)
T KOG0334|consen 539 ILQNL-------RPDRQTVLFSATFPRSMEALARKVLKKPVE--IIVGGRSVVCKEVTQVVRVCAI--ENEKFLKLLE-- 605 (997)
T ss_pred HHhhc-------chhhhhhhhhhhhhHHHHHHHHHhhcCCee--EEEccceeEeccceEEEEEecC--chHHHHHHHH--
Confidence 66554 678899999999986 33344333332221 22221111 1122333332221 1222222222
Q ss_pred HHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCC
Q 000129 724 YEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAG 803 (2114)
Q Consensus 724 ~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHag 803 (2114)
.+.......++||||.+...|..+.+.|...+..+..+ |||
T Consensus 606 --Ll~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~sl-------------------------------------HGg 646 (997)
T KOG0334|consen 606 --LLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSL-------------------------------------HGG 646 (997)
T ss_pred --HHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhh-------------------------------------cCC
Confidence 23333447899999999999999999999777665433 999
Q ss_pred CCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEE
Q 000129 804 MTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883 (2114)
Q Consensus 804 l~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~i 883 (2114)
.++.+|..+++.|++|.+.+||||+++++|+|++...+||+ ||.+. -..+|+||+||+||+| .+|.|+
T Consensus 647 v~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvn----yd~pn------h~edyvhR~gRTgrag--rkg~Av 714 (997)
T KOG0334|consen 647 VDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVN----YDFPN------HYEDYVHRVGRTGRAG--RKGAAV 714 (997)
T ss_pred CchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEE----cccch------hHHHHHHHhcccccCC--ccceeE
Confidence 99999999999999999999999999999999999999999 88776 4677999999999998 789999
Q ss_pred EEcCCCcHHHHHH------hhcCCCcccchhhHhhHHHHHHHHhhc
Q 000129 884 IITGHSELRYYLS------LMNQQLPIESQFVSKLADQLNAEIVLG 923 (2114)
Q Consensus 884 il~~~~e~~~~~~------ll~~~~pies~l~~~l~d~l~~ei~~~ 923 (2114)
.|.++.+..+--. +...+.| .+...+.....++...|
T Consensus 715 tFi~p~q~~~a~dl~~al~~~~~~~P---~~l~~l~~~f~~~~~~~ 757 (997)
T KOG0334|consen 715 TFITPDQLKYAGDLCKALELSKQPVP---KLLQALSERFKAKQKAG 757 (997)
T ss_pred EEeChHHhhhHHHHHHHHHhccCCCc---hHHHHHHHHHHhhhhcc
Confidence 9998855443222 2233333 55555555555555444
No 114
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=2.5e-32 Score=364.79 Aligned_cols=307 Identities=23% Similarity=0.321 Sum_probs=220.1
Q ss_pred CCCCCCHHHHHHHHHHHcCC-----CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000129 492 GMTQLNRVQSRVYKSALSSA-----DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (2114)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~-----~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~ 566 (2114)
+| +||++|.+|++.+..+. .|+|++||||||||.+|++|++..+.. +.+++|++||++||.|+
T Consensus 259 ~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~-----------g~q~lilaPT~~LA~Q~ 326 (681)
T PRK10917 259 PF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA-----------GYQAALMAPTEILAEQH 326 (681)
T ss_pred CC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc-----------CCeEEEEeccHHHHHHH
Confidence 35 69999999999988763 379999999999999999999988754 34899999999999999
Q ss_pred HHHHHHhhccCCcEEEEEeCCCccChhh-------hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCC
Q 000129 567 VGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNR 639 (2114)
Q Consensus 567 ~~~~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~r 639 (2114)
++.+++++..+|+++..++|+.+...+. .+.++|+|+||+.+. ....+++++++||||+|++...
T Consensus 327 ~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~-------~~v~~~~l~lvVIDE~Hrfg~~- 398 (681)
T PRK10917 327 YENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQ-------DDVEFHNLGLVIIDEQHRFGVE- 398 (681)
T ss_pred HHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhc-------ccchhcccceEEEechhhhhHH-
Confidence 9999999999999999999998754321 236899999998652 1234678999999999986421
Q ss_pred chhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecC-CcccccceeEEEeeccCchhHHHHH
Q 000129 640 GPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDN-SYRPVPLSQQYIGIQVKKPLQRFQL 718 (2114)
Q Consensus 640 g~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~-~~rpv~l~~~~~~~~~~~~~~~~~~ 718 (2114)
.... +......+++++||||. ....++........ ....+. .....++...+.. .... .
T Consensus 399 ---qr~~-------l~~~~~~~~iL~~SATp-~prtl~~~~~g~~~--~s~i~~~p~~r~~i~~~~~~--~~~~----~- 458 (681)
T PRK10917 399 ---QRLA-------LREKGENPHVLVMTATP-IPRTLAMTAYGDLD--VSVIDELPPGRKPITTVVIP--DSRR----D- 458 (681)
T ss_pred ---HHHH-------HHhcCCCCCEEEEeCCC-CHHHHHHHHcCCCc--eEEEecCCCCCCCcEEEEeC--cccH----H-
Confidence 1111 11234468899999994 44444433322111 111111 0001123322221 1111 1
Q ss_pred hhHHHHHHHHHH-hCCCeEEEEecChHHHHH--------HHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchh
Q 000129 719 MNDLCYEKVVAV-AGKHQVLIFVHSRKETAK--------TARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDL 789 (2114)
Q Consensus 719 ~~~~~~~~i~~~-~~~~~vLVFv~sr~~~~~--------~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L 789 (2114)
.+++.+.+. ..+++++|||+..++.+. +++.|.
T Consensus 459 ---~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~----------------------------------- 500 (681)
T PRK10917 459 ---EVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQ----------------------------------- 500 (681)
T ss_pred ---HHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHH-----------------------------------
Confidence 122222222 346799999997654432 222222
Q ss_pred hhhc-cCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhh
Q 000129 790 KDLL-PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQML 868 (2114)
Q Consensus 790 ~~ll-~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~ 868 (2114)
..+ ...++.+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+ |+++. .+...+.||+
T Consensus 501 -~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi----~~~~r-----~gls~lhQ~~ 570 (681)
T PRK10917 501 -EAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVI----ENAER-----FGLAQLHQLR 570 (681)
T ss_pred -HHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEE----eCCCC-----CCHHHHHHHh
Confidence 111 256899999999999999999999999999999999999999999999998 77664 3678899999
Q ss_pred cccCCCCCCCceEEEEEcCC
Q 000129 869 GRAGRPQYDSYGEGIIITGH 888 (2114)
Q Consensus 869 GRAGR~g~d~~G~~iil~~~ 888 (2114)
||+||.| ..|.|+++++.
T Consensus 571 GRvGR~g--~~g~~ill~~~ 588 (681)
T PRK10917 571 GRVGRGA--AQSYCVLLYKD 588 (681)
T ss_pred hcccCCC--CceEEEEEECC
Confidence 9999987 67999999964
No 115
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-33 Score=336.43 Aligned_cols=348 Identities=20% Similarity=0.259 Sum_probs=251.6
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
+...+.+.+ .||..|+|+|.+|+|.+++.. +++.|||||||||++|.+|++..+...... ....+.+++++.||
T Consensus 143 ~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r-~~lAcapTGsgKtlaf~~Pil~~L~~~~~~---~~~~gl~a~Il~pt 218 (593)
T KOG0344|consen 143 MNKRLLENLQELGFDEPTPIQKQAIPVFLEKR-DVLACAPTGSGKTLAFNLPILQHLKDLSQE---KHKVGLRALILSPT 218 (593)
T ss_pred hcHHHHHhHhhCCCCCCCcccchhhhhhhccc-ceEEeccCCCcchhhhhhHHHHHHHHhhcc---cCccceEEEEecch
Confidence 344445555 689999999999999877765 599999999999999999999999876421 12356799999999
Q ss_pred HHHHHHHHHHHHHhh--ccCCcEEEEEeCCCccChh----hhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccc
Q 000129 560 KALVAEVVGNLSNRL--QMYDVKVRELSGDQTLTRQ----QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIH 633 (2114)
Q Consensus 560 raLa~q~~~~~~~~~--~~~gi~v~~l~Gd~~~~~~----~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH 633 (2114)
|+||.|+++++.++- ...+.++..+........+ ....++|+|+||-++--+.........+..|.++|+||++
T Consensus 219 reLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD 298 (593)
T KOG0344|consen 219 RELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEAD 298 (593)
T ss_pred HHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHH
Confidence 999999999999877 5556666666665333222 2357899999999864444333323567889999999999
Q ss_pred ccccCCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccc---cceeEEEeeccC
Q 000129 634 LLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPV---PLSQQYIGIQVK 710 (2114)
Q Consensus 634 ~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv---~l~~~~~~~~~~ 710 (2114)
++.+. ..+-.-++++.... ..+++++-+||||++ ..+.+|........... .-..++. .+.|..+.+...
T Consensus 299 ~lfe~--~~f~~Qla~I~sac--~s~~i~~a~FSat~~--~~VEE~~~~i~~~~~~v-ivg~~~sa~~~V~QelvF~gse 371 (593)
T KOG0344|consen 299 LLFEP--EFFVEQLADIYSAC--QSPDIRVALFSATIS--VYVEEWAELIKSDLKRV-IVGLRNSANETVDQELVFCGSE 371 (593)
T ss_pred hhhCh--hhHHHHHHHHHHHh--cCcchhhhhhhcccc--HHHHHHHHHhhccceeE-EEecchhHhhhhhhhheeeecc
Confidence 99764 12222233333222 347889999999987 67888987654322211 1111211 122222211111
Q ss_pred chhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhh
Q 000129 711 KPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK 790 (2114)
Q Consensus 711 ~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~ 790 (2114)
..++-++.+ +....-..|+|||+.+.+.|..+...|.. .
T Consensus 372 --~~K~lA~rq-----~v~~g~~PP~lIfVQs~eRak~L~~~L~~----~------------------------------ 410 (593)
T KOG0344|consen 372 --KGKLLALRQ-----LVASGFKPPVLIFVQSKERAKQLFEELEI----Y------------------------------ 410 (593)
T ss_pred --hhHHHHHHH-----HHhccCCCCeEEEEecHHHHHHHHHHhhh----c------------------------------
Confidence 111222221 22222367999999999999988877741 0
Q ss_pred hhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcc
Q 000129 791 DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGR 870 (2114)
Q Consensus 791 ~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GR 870 (2114)
-...|++.||..++.+|..++++|+.|+++||+||++++||+|+.+++.||| ||.+. |..+|+||+||
T Consensus 411 --~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VIn----yD~p~------s~~syihrIGR 478 (593)
T KOG0344|consen 411 --DNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVIN----YDFPQ------SDLSYIHRIGR 478 (593)
T ss_pred --cCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEe----cCCCc------hhHHHHHHhhc
Confidence 0124788899999999999999999999999999999999999999999999 88877 88999999999
Q ss_pred cCCCCCCCceEEEEEcCCCcHHHHH
Q 000129 871 AGRPQYDSYGEGIIITGHSELRYYL 895 (2114)
Q Consensus 871 AGR~g~d~~G~~iil~~~~e~~~~~ 895 (2114)
+||+| ..|.||.+++..+..+..
T Consensus 479 tgRag--~~g~Aitfytd~d~~~ir 501 (593)
T KOG0344|consen 479 TGRAG--RSGKAITFYTDQDMPRIR 501 (593)
T ss_pred cCCCC--CCcceEEEeccccchhhh
Confidence 99998 889999999997766654
No 116
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=2.1e-32 Score=363.51 Aligned_cols=312 Identities=23% Similarity=0.329 Sum_probs=219.6
Q ss_pred CCCCCCHHHHHHHHHHHcCC-----CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000129 492 GMTQLNRVQSRVYKSALSSA-----DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (2114)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~-----~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~ 566 (2114)
+| +||++|.+|++.++.+- .|.|++||||||||.+|+++++..+..+ .+++|++||++||.|+
T Consensus 233 pf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g-----------~qvlilaPT~~LA~Q~ 300 (630)
T TIGR00643 233 PF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAG-----------YQVALMAPTEILAEQH 300 (630)
T ss_pred CC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcC-----------CcEEEECCHHHHHHHH
Confidence 46 79999999999988752 2689999999999999999999987542 4799999999999999
Q ss_pred HHHHHHhhccCCcEEEEEeCCCccChhh-------hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCC
Q 000129 567 VGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNR 639 (2114)
Q Consensus 567 ~~~~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~r 639 (2114)
++.++++++.+|+++..++|+.....+. ...++|+|+||+.+. . ...+.++++|||||+|+++...
T Consensus 301 ~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~---~----~~~~~~l~lvVIDEaH~fg~~q 373 (630)
T TIGR00643 301 YNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQ---E----KVEFKRLALVIIDEQHRFGVEQ 373 (630)
T ss_pred HHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHh---c----cccccccceEEEechhhccHHH
Confidence 9999999999999999999998755421 235799999998642 1 1346789999999999864321
Q ss_pred chhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHh
Q 000129 640 GPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLM 719 (2114)
Q Consensus 640 g~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~ 719 (2114)
...+... .......++++||||.. ...++..+............+.. ..++...+.. ... .
T Consensus 374 ----r~~l~~~----~~~~~~~~~l~~SATp~-prtl~l~~~~~l~~~~i~~~p~~-r~~i~~~~~~--~~~---~---- 434 (630)
T TIGR00643 374 ----RKKLREK----GQGGFTPHVLVMSATPI-PRTLALTVYGDLDTSIIDELPPG-RKPITTVLIK--HDE---K---- 434 (630)
T ss_pred ----HHHHHHh----cccCCCCCEEEEeCCCC-cHHHHHHhcCCcceeeeccCCCC-CCceEEEEeC--cch---H----
Confidence 1111111 00112678999999943 34444332211111010000000 1122222221 111 1
Q ss_pred hHHHHHHHHHH-hCCCeEEEEecChHHHHHH--------HHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhh
Q 000129 720 NDLCYEKVVAV-AGKHQVLIFVHSRKETAKT--------ARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK 790 (2114)
Q Consensus 720 ~~~~~~~i~~~-~~~~~vLVFv~sr~~~~~~--------a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~ 790 (2114)
+.++..+.+. ..+++++|||+..++.+.+ ++.|.+.
T Consensus 435 -~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~---------------------------------- 479 (630)
T TIGR00643 435 -DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKA---------------------------------- 479 (630)
T ss_pred -HHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhh----------------------------------
Confidence 2233444433 3477999999987654332 2222110
Q ss_pred hhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcc
Q 000129 791 DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGR 870 (2114)
Q Consensus 791 ~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GR 870 (2114)
+-...++.+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||. |+++. .+...|.||+||
T Consensus 480 -~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi----~~~~r-----~gls~lhQ~~GR 549 (630)
T TIGR00643 480 -FPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVI----EDAER-----FGLSQLHQLRGR 549 (630)
T ss_pred -CCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEE----eCCCc-----CCHHHHHHHhhh
Confidence 11356899999999999999999999999999999999999999999999997 77654 367889999999
Q ss_pred cCCCCCCCceEEEEEcCC
Q 000129 871 AGRPQYDSYGEGIIITGH 888 (2114)
Q Consensus 871 AGR~g~d~~G~~iil~~~ 888 (2114)
|||.| ..|.|++++..
T Consensus 550 vGR~g--~~g~~il~~~~ 565 (630)
T TIGR00643 550 VGRGD--HQSYCLLVYKN 565 (630)
T ss_pred cccCC--CCcEEEEEECC
Confidence 99986 67999999843
No 117
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-32 Score=332.15 Aligned_cols=334 Identities=24% Similarity=0.339 Sum_probs=251.4
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc---CCCceEEEEEcccHHHHHHHHHHHHHHh
Q 000129 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS---ETGVMRAVYIAPLEALAKERYRDWEIKF 1414 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~---~~~~~k~l~I~Ptr~La~q~~~~~~~~f 1414 (2114)
+|..|+|+|.+|++.+++..+ ++.|||||||||++|.+|++.++.... ...+.+++++.|+|+||.|++.+.. ++
T Consensus 155 ~F~~Pt~iq~~aipvfl~~r~-~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~-k~ 232 (593)
T KOG0344|consen 155 GFDEPTPIQKQAIPVFLEKRD-VLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMR-KY 232 (593)
T ss_pred CCCCCCcccchhhhhhhcccc-eEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHH-hc
Confidence 799999999999999988555 999999999999999999999998754 1446799999999999999999998 56
Q ss_pred c--CCCCcEEEEEcCCcccch----hhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHH
Q 000129 1415 G--QGLGMRVVELTGETAMDL----KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 1488 (2114)
Q Consensus 1415 ~--~~~g~~v~~l~G~~~~~~----~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~ 1488 (2114)
. ...+.++..+........ .....++|+++||-++..++........+..|.++|+||+|++.+. +.++
T Consensus 233 ~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~-----~~f~ 307 (593)
T KOG0344|consen 233 SIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEP-----EFFV 307 (593)
T ss_pred CCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhCh-----hhHH
Confidence 6 445666666655433321 2234569999999998777765333347899999999999999866 3355
Q ss_pred HHHHHHHhh-cCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHH--hcCHHHHH
Q 000129 1489 SRMRYIASQ-VENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQ--AMTKPTFT 1565 (2114)
Q Consensus 1489 srl~~i~~~-~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~--~~~~~~~~ 1565 (2114)
.++-.+.+. ..+++++-+||||.+ ..+.+|.........+..-..++...+ ...+... -.....+.
T Consensus 308 ~Qla~I~sac~s~~i~~a~FSat~~--~~VEE~~~~i~~~~~~vivg~~~sa~~---------~V~QelvF~gse~~K~l 376 (593)
T KOG0344|consen 308 EQLADIYSACQSPDIRVALFSATIS--VYVEEWAELIKSDLKRVIVGLRNSANE---------TVDQELVFCGSEKGKLL 376 (593)
T ss_pred HHHHHHHHHhcCcchhhhhhhcccc--HHHHHHHHHhhccceeEEEecchhHhh---------hhhhhheeeecchhHHH
Confidence 555444433 246788889999975 458888876654433332222221111 0011100 01122233
Q ss_pred HHHHHhc--CCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCC
Q 000129 1566 AIVQHAK--NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGL 1643 (2114)
Q Consensus 1566 ~i~~~l~--~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~l 1643 (2114)
++.+.+. -..|+|||+.+.+.|..+...|- .+-...|.+.||..
T Consensus 377 A~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~----------------------------------~~~~i~v~vIh~e~ 422 (593)
T KOG0344|consen 377 ALRQLVASGFKPPVLIFVQSKERAKQLFEELE----------------------------------IYDNINVDVIHGER 422 (593)
T ss_pred HHHHHHhccCCCCeEEEEecHHHHHHHHHHhh----------------------------------hccCcceeeEeccc
Confidence 3333333 34679999999999988886662 11233589999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEE
Q 000129 1644 NKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVI 1723 (2114)
Q Consensus 1644 s~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~ii 1723 (2114)
++.+|..+++.|+.|++.||+||++++||+|+.+++.|| +||+|-+..+|+||+||+||+ +..|+||.
T Consensus 423 ~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VI----------nyD~p~s~~syihrIGRtgRa--g~~g~Ait 490 (593)
T KOG0344|consen 423 SQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVI----------NYDFPQSDLSYIHRIGRTGRA--GRSGKAIT 490 (593)
T ss_pred chhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEE----------ecCCCchhHHHHHHhhccCCC--CCCcceEE
Confidence 999999999999999999999999999999999999999 899999999999999999999 79999999
Q ss_pred EeecCcHHHHHH
Q 000129 1724 LCHAPRKEYYKK 1735 (2114)
Q Consensus 1724 l~~~~~~~~~~~ 1735 (2114)
|+.+.+..+.+.
T Consensus 491 fytd~d~~~ir~ 502 (593)
T KOG0344|consen 491 FYTDQDMPRIRS 502 (593)
T ss_pred Eeccccchhhhh
Confidence 999877665443
No 118
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=2.5e-31 Score=358.01 Aligned_cols=429 Identities=14% Similarity=0.131 Sum_probs=277.4
Q ss_pred HHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcC
Q 000129 1348 QVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTG 1427 (2114)
Q Consensus 1348 q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G 1427 (2114)
+.|...+.+++.++|+|+||||||+. +|.+-.-......+ ++++..|+|-.|..++.++...++..+|..|+.-+.
T Consensus 80 ~~Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~g~g~~g--~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~vr 155 (1294)
T PRK11131 80 QDILEAIRDHQVVIVAGETGSGKTTQ--LPKICLELGRGVKG--LIGHTQPRRLAARTVANRIAEELETELGGCVGYKVR 155 (1294)
T ss_pred HHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHcCCCCCC--ceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceeec
Confidence 34444556678799999999999995 56332211111223 778889987777777766666665444545543222
Q ss_pred CcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEeccccc-ccCCCCchHHHHHHHHHHHHhhcCCCceEEE
Q 000129 1428 ETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHL-IGGQGGPVLEVIVSRMRYIASQVENKIRIVA 1506 (2114)
Q Consensus 1428 ~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~-l~~~~g~~le~i~srl~~i~~~~~~~~riV~ 1506 (2114)
.+.+.-..++|+|+||+++...+.. ...++++++|||||||. ..+.. .++..++.+... .++.|+|+
T Consensus 156 ---f~~~~s~~t~I~v~TpG~LL~~l~~---d~~Ls~~~~IIIDEAHERsLn~D-----fLLg~Lk~lL~~-rpdlKvIL 223 (1294)
T PRK11131 156 ---FNDQVSDNTMVKLMTDGILLAEIQQ---DRLLMQYDTIIIDEAHERSLNID-----FILGYLKELLPR-RPDLKVII 223 (1294)
T ss_pred ---CccccCCCCCEEEEChHHHHHHHhc---CCccccCcEEEecCccccccccc-----hHHHHHHHhhhc-CCCceEEE
Confidence 1222234679999999998877654 45699999999999993 33221 133444544433 35789999
Q ss_pred EcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHH-hcCCCCEEEEeCChH
Q 000129 1507 LSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQH-AKNEKPALVFVPSRK 1585 (2114)
Q Consensus 1507 lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-l~~~~~~LVFv~sr~ 1585 (2114)
||||+ +.+.++++++..+ ++..+. +..|+++.+............ .........+... ....+.+|||||++.
T Consensus 224 mSATi-d~e~fs~~F~~ap--vI~V~G--r~~pVei~y~p~~~~~~~~~~-d~l~~ll~~V~~l~~~~~GdILVFLpg~~ 297 (1294)
T PRK11131 224 TSATI-DPERFSRHFNNAP--IIEVSG--RTYPVEVRYRPIVEEADDTER-DQLQAIFDAVDELGREGPGDILIFMSGER 297 (1294)
T ss_pred eeCCC-CHHHHHHHcCCCC--EEEEcC--ccccceEEEeecccccchhhH-HHHHHHHHHHHHHhcCCCCCEEEEcCCHH
Confidence 99999 5778998887543 444443 334555544432211100000 0001111111111 134578999999999
Q ss_pred HHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEe
Q 000129 1586 YVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVM 1665 (2114)
Q Consensus 1586 ~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVa 1665 (2114)
+++.++..|..... ....|..+||+|++.+|..+++. .|..+||||
T Consensus 298 EIe~lae~L~~~~~--------------------------------~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVA 343 (1294)
T PRK11131 298 EIRDTADALNKLNL--------------------------------RHTEILPLYARLSNSEQNRVFQS--HSGRRIVLA 343 (1294)
T ss_pred HHHHHHHHHHhcCC--------------------------------CcceEeecccCCCHHHHHHHhcc--cCCeeEEEe
Confidence 99999977743100 01237789999999999999986 588999999
Q ss_pred cCccccccCCCCcEEEEE----eeeEecCCcCc----CCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHHHHH
Q 000129 1666 SSSMCWGVPLTAHLVVVM----GTQYYDGQENA----HTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFL 1737 (2114)
Q Consensus 1666 T~~la~Gvdip~~~vVI~----gt~~yd~~~~~----~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~~~l 1737 (2114)
|+++++|||+|++.+||. ....|+.+.+. ..+.|.++|.||+|||||. .+|.||.++++.+...+..
T Consensus 344 TNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~---~~G~c~rLyte~d~~~~~~-- 418 (1294)
T PRK11131 344 TNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV---SEGICIRLYSEDDFLSRPE-- 418 (1294)
T ss_pred ccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC---CCcEEEEeCCHHHHHhhhc--
Confidence 999999999999999993 23567766432 2356789999999999995 6999999998654332221
Q ss_pred HhccCCCCc--------------cccCCCcc-chHHHHHHHHHHHHHHHHHCCCceecCC-CccccCcccchhhhcccCH
Q 000129 1738 RLTQNPNYY--------------NLQGVSHR-HLSDHLSELVENTISDLEASKCIIIEED-MDLSPSNHGMIASYYYISY 1801 (2114)
Q Consensus 1738 Rl~~nP~~y--------------~l~~~s~~-~l~~~lselve~~l~~L~~~~~I~~~~~-~~~~~t~lG~i~s~y~i~~ 1801 (2114)
...|... ++.++... -++..-.+.|..++..|.+.|+|+.++. +...+|++|+.+|.+|++|
T Consensus 419 --~~~PEIlR~~L~~viL~lk~lgl~di~~F~fldpP~~~~i~~al~~L~~LgAld~~~~~~~~~LT~lG~~la~LPldP 496 (1294)
T PRK11131 419 --FTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLAQLPVDP 496 (1294)
T ss_pred --ccCCccccCCHHHHHHHHHHcCCCCcceeeCCCCCCHHHHHHHHHHHHHCCCCCccccCCCccCcHHHHHHHhCCCCh
Confidence 1222211 11111110 1111235789999999999999975422 2467999999999999999
Q ss_pred hHHHHHHhhcCCCCChhhHHHHHhcCccccCCCCCcchHH
Q 000129 1802 TTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEE 1841 (2114)
Q Consensus 1802 ~T~~~f~~sl~~~~~~~~iL~ils~a~Ef~~i~vR~~E~~ 1841 (2114)
...++++.+....+ +.+++.|.|.-+ ..+...|+.++.
T Consensus 497 rlakmLl~a~~~~c-~~evl~IaA~Ls-v~dpf~~p~~~~ 534 (1294)
T PRK11131 497 RLARMVLEAQKHGC-VREVMIITSALS-IQDPRERPMDKQ 534 (1294)
T ss_pred HHHHHHHHhhhcCC-HHHHHHHHHHHc-CCCcccCCchhH
Confidence 99999998766554 455665554332 345555655543
No 119
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=9.5e-31 Score=359.17 Aligned_cols=314 Identities=17% Similarity=0.249 Sum_probs=228.4
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHcC-----CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHH
Q 000129 1332 YEALYQGFKHFNPIQTQVFTVLYNT-----DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKER 1406 (2114)
Q Consensus 1332 ~~~l~~gf~~~~~iQ~q~~~~il~~-----~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~ 1406 (2114)
+..-|+ | .+|++|.+|++.++.+ ..+++++||||||||.+|..+++..+.. +. +++|++||++||.|+
T Consensus 593 ~~~~~~-~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~---g~--qvlvLvPT~eLA~Q~ 665 (1147)
T PRK10689 593 FCDSFP-F-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN---HK--QVAVLVPTTLLAQQH 665 (1147)
T ss_pred HHHhCC-C-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc---CC--eEEEEeCcHHHHHHH
Confidence 334343 5 7999999999999875 2579999999999999999888776543 34 999999999999999
Q ss_pred HHHHHHHhcCCCCcEEEEEcCCcccchh-----hc--cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCC
Q 000129 1407 YRDWEIKFGQGLGMRVVELTGETAMDLK-----LL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479 (2114)
Q Consensus 1407 ~~~~~~~f~~~~g~~v~~l~G~~~~~~~-----~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~ 1479 (2114)
++.|+++|+.. ++++..++|..+...+ .+ ...+|+|+||+.+ +. ...+++++++||||+|+++..
T Consensus 666 ~~~f~~~~~~~-~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~~---~v~~~~L~lLVIDEahrfG~~ 737 (1147)
T PRK10689 666 YDNFRDRFANW-PVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----QS---DVKWKDLGLLIVDEEHRFGVR 737 (1147)
T ss_pred HHHHHHhhccC-CceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----hC---CCCHhhCCEEEEechhhcchh
Confidence 99999877654 7888888887665421 12 2459999999742 22 234678999999999997421
Q ss_pred CCchHHHHHHHHHHHHhhcCCCceEEEEcccCCC-hhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHh
Q 000129 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQA 1558 (2114)
Q Consensus 1480 ~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n-~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~ 1558 (2114)
...++ ..++.+.++++||||+.. ...++. .+.....++..++..| .++...+..+..
T Consensus 738 -------~~e~l----k~l~~~~qvLl~SATpiprtl~l~~-~gl~d~~~I~~~p~~r-~~v~~~~~~~~~--------- 795 (1147)
T PRK10689 738 -------HKERI----KAMRADVDILTLTATPIPRTLNMAM-SGMRDLSIIATPPARR-LAVKTFVREYDS--------- 795 (1147)
T ss_pred -------HHHHH----HhcCCCCcEEEEcCCCCHHHHHHHH-hhCCCcEEEecCCCCC-CCceEEEEecCc---------
Confidence 12222 234678999999999743 223322 2222223444333332 244433332210
Q ss_pred cCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEe
Q 000129 1559 MTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGY 1638 (2114)
Q Consensus 1559 ~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~ 1638 (2114)
......+...+..+++++||||+++.++.++..|.... ...+|+.
T Consensus 796 --~~~k~~il~el~r~gqv~vf~n~i~~ie~la~~L~~~~---------------------------------p~~~v~~ 840 (1147)
T PRK10689 796 --LVVREAILREILRGGQVYYLYNDVENIQKAAERLAELV---------------------------------PEARIAI 840 (1147)
T ss_pred --HHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhC---------------------------------CCCcEEE
Confidence 11223444444668899999999999988887664321 1346899
Q ss_pred ecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCc
Q 000129 1639 LHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNS 1718 (2114)
Q Consensus 1639 ~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~ 1718 (2114)
+||+|++.+|..++..|++|+++|||||+++++|+|+|++++||. .....++...|+||+||+||. +..
T Consensus 841 lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi---------~~ad~fglaq~~Qr~GRvGR~--g~~ 909 (1147)
T PRK10689 841 GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII---------ERADHFGLAQLHQLRGRVGRS--HHQ 909 (1147)
T ss_pred EeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEE---------ecCCCCCHHHHHHHhhccCCC--CCc
Confidence 999999999999999999999999999999999999999999883 111235677899999999997 789
Q ss_pred eEEEEEeecC
Q 000129 1719 GKCVILCHAP 1728 (2114)
Q Consensus 1719 G~~iil~~~~ 1728 (2114)
|.|++++..+
T Consensus 910 g~a~ll~~~~ 919 (1147)
T PRK10689 910 AYAWLLTPHP 919 (1147)
T ss_pred eEEEEEeCCC
Confidence 9999999765
No 120
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=3e-31 Score=354.42 Aligned_cols=314 Identities=23% Similarity=0.340 Sum_probs=220.9
Q ss_pred CCCHHHHHHHHHHHcCC-----CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000129 1341 HFNPIQTQVFTVLYNTD-----DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~-----~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~ 1415 (2114)
.||++|.+|++.+..+- .|++++||||||||++|++|++..+.. +. +++|++||++||.|+++.+++.+.
T Consensus 261 ~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~---g~--q~lilaPT~~LA~Q~~~~l~~l~~ 335 (681)
T PRK10917 261 ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA---GY--QAALMAPTEILAEQHYENLKKLLE 335 (681)
T ss_pred CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---CC--eEEEEeccHHHHHHHHHHHHHHHh
Confidence 59999999999998742 479999999999999999999987754 33 999999999999999999996555
Q ss_pred CCCCcEEEEEcCCcccch-----hhcc--CCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHH
Q 000129 1416 QGLGMRVVELTGETAMDL-----KLLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 1488 (2114)
Q Consensus 1416 ~~~g~~v~~l~G~~~~~~-----~~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~ 1488 (2114)
. .|++++.++|+.+... ..+. ..+|+|+||+.+. ....+.+++++|+||+|+++... .
T Consensus 336 ~-~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~-------~~v~~~~l~lvVIDE~Hrfg~~q-------r 400 (681)
T PRK10917 336 P-LGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQ-------DDVEFHNLGLVIIDEQHRFGVEQ-------R 400 (681)
T ss_pred h-cCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhc-------ccchhcccceEEEechhhhhHHH-------H
Confidence 4 5899999999987532 2232 4699999998752 22357899999999999874211 1
Q ss_pred HHHHHHHhhcCCCceEEEEcccCCChhHHHHH-hcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHH
Q 000129 1489 SRMRYIASQVENKIRIVALSTSLANAKDLGEW-IGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAI 1567 (2114)
Q Consensus 1489 srl~~i~~~~~~~~riV~lSATl~n~~dla~w-l~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i 1567 (2114)
..+. ......++++||||+. .+.++-. .+......+.-.|..|. |+...+.... . ....+..+
T Consensus 401 ~~l~----~~~~~~~iL~~SATp~-prtl~~~~~g~~~~s~i~~~p~~r~-~i~~~~~~~~--~--------~~~~~~~i 464 (681)
T PRK10917 401 LALR----EKGENPHVLVMTATPI-PRTLAMTAYGDLDVSVIDELPPGRK-PITTVVIPDS--R--------RDEVYERI 464 (681)
T ss_pred HHHH----hcCCCCCEEEEeCCCC-HHHHHHHHcCCCceEEEecCCCCCC-CcEEEEeCcc--c--------HHHHHHHH
Confidence 1121 1244688999999974 3333322 22222112221222222 3333322211 0 01234455
Q ss_pred HHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHh-ccceEeecCCCCHH
Q 000129 1568 VQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL-RHGVGYLHEGLNKT 1646 (2114)
Q Consensus 1568 ~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l-~~gV~~~H~~ls~~ 1646 (2114)
...+..+++++||||+.+.+..+. + ....... +.+...+ ...|+.+||+|++.
T Consensus 465 ~~~~~~g~q~~v~~~~ie~s~~l~--~-------------------~~~~~~~-----~~L~~~~~~~~v~~lHG~m~~~ 518 (681)
T PRK10917 465 REEIAKGRQAYVVCPLIEESEKLD--L-------------------QSAEETY-----EELQEAFPELRVGLLHGRMKPA 518 (681)
T ss_pred HHHHHcCCcEEEEEcccccccchh--H-------------------HHHHHHH-----HHHHHHCCCCcEEEEeCCCCHH
Confidence 555577889999999765443210 0 0000000 1122222 35799999999999
Q ss_pred HHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCC-CCHhHHHHhHcccCCCCCCCceEEEEEe
Q 000129 1647 DQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTD-YPVTDLLQMMGHASRPLLDNSGKCVILC 1725 (2114)
Q Consensus 1647 dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~-~s~~~~lQr~GRAGR~~~~~~G~~iil~ 1725 (2114)
+|..+++.|++|+++|||||+++++|+|+|++++|| +++.| +..+.+.||+||+||. +..|.|++++
T Consensus 519 eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VI----------i~~~~r~gls~lhQ~~GRvGR~--g~~g~~ill~ 586 (681)
T PRK10917 519 EKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMV----------IENAERFGLAQLHQLRGRVGRG--AAQSYCVLLY 586 (681)
T ss_pred HHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEE----------EeCCCCCCHHHHHHHhhcccCC--CCceEEEEEE
Confidence 999999999999999999999999999999999998 45454 3578899999999998 6799999999
Q ss_pred ecC
Q 000129 1726 HAP 1728 (2114)
Q Consensus 1726 ~~~ 1728 (2114)
+.+
T Consensus 587 ~~~ 589 (681)
T PRK10917 587 KDP 589 (681)
T ss_pred CCC
Confidence 644
No 121
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.1e-32 Score=328.72 Aligned_cols=341 Identities=18% Similarity=0.239 Sum_probs=261.3
Q ss_pred hHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHH
Q 000129 1330 PLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYR 1408 (2114)
Q Consensus 1330 ~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~ 1408 (2114)
+.+..+-. +|..++++|..|||.++.+-+ +||.|..|+|||++|-.++++.+... ...+.+++++|||++|.|+..
T Consensus 35 ~vl~glrrn~f~~ptkiQaaAIP~~~~kmD-liVQaKSGTGKTlVfsv~av~sl~~~--~~~~q~~Iv~PTREiaVQI~~ 111 (980)
T KOG4284|consen 35 EVLLGLRRNAFALPTKIQAAAIPAIFSKMD-LIVQAKSGTGKTLVFSVLAVESLDSR--SSHIQKVIVTPTREIAVQIKE 111 (980)
T ss_pred HHHHHHHhhcccCCCchhhhhhhhhhcccc-eEEEecCCCCceEEEEeeeehhcCcc--cCcceeEEEecchhhhhHHHH
Confidence 33444433 599999999999999998666 99999999999999998888887763 334599999999999999999
Q ss_pred HHHHHhcCCCCcEEEEEcCCccc--chhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHH
Q 000129 1409 DWEIKFGQGLGMRVVELTGETAM--DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEV 1486 (2114)
Q Consensus 1409 ~~~~~f~~~~g~~v~~l~G~~~~--~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~ 1486 (2114)
.+.+.-....|.++..+.|++.. |...+++++|+|+||+++..|... ...+..+++|+|+||||.|.+.. .
T Consensus 112 tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el--~~~n~s~vrlfVLDEADkL~~t~-----s 184 (980)
T KOG4284|consen 112 TVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVEL--GAMNMSHVRLFVLDEADKLMDTE-----S 184 (980)
T ss_pred HHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHh--cCCCccceeEEEeccHHhhhchh-----h
Confidence 99843334478999999998764 566788999999999999988875 45578999999999999887643 2
Q ss_pred HHHHHHHHHhhcCCCceEEEEcccCCC--hhHHHHHhcCCCCceeecCCC-CCccCcEEEEecccccchHHHHHhcCHHH
Q 000129 1487 IVSRMRYIASQVENKIRIVALSTSLAN--AKDLGEWIGATSHGLFNFPPG-VRPVPLEIHIQGVDITNFEARMQAMTKPT 1563 (2114)
Q Consensus 1487 i~srl~~i~~~~~~~~riV~lSATl~n--~~dla~wl~~~~~~~~~f~~~-~rpv~l~~~~~~~~~~~~~~~~~~~~~~~ 1563 (2114)
+...+..|...++...|++++|||.+. ...++.++..+. ++.|... ..-.-+..++.....++.........-..
T Consensus 185 fq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~--lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~ 262 (980)
T KOG4284|consen 185 FQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPA--LVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQK 262 (980)
T ss_pred HHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccc--eeecccCCceeechhheeeeccCCcchHHHHHHHHHH
Confidence 566666777778889999999999976 335777776543 2222221 11112222333222222221111111122
Q ss_pred HHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCC
Q 000129 1564 FTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGL 1643 (2114)
Q Consensus 1564 ~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~l 1643 (2114)
+..+... -+-.++||||+....|+.+|..|.. -+..+.++.|.|
T Consensus 263 L~~vf~~-ipy~QAlVF~~~~sra~~~a~~L~s-----------------------------------sG~d~~~ISgaM 306 (980)
T KOG4284|consen 263 LTHVFKS-IPYVQALVFCDQISRAEPIATHLKS-----------------------------------SGLDVTFISGAM 306 (980)
T ss_pred HHHHHhh-CchHHHHhhhhhhhhhhHHHHHhhc-----------------------------------cCCCeEEecccc
Confidence 2233333 3556899999999999888866622 244588999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEE
Q 000129 1644 NKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVI 1723 (2114)
Q Consensus 1644 s~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~ii 1723 (2114)
++.+|..+++.+++-..+|||+|+..+||||-|.+++|| +.+.|.+-..|+||+|||||- |..|.++.
T Consensus 307 ~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVV----------NiD~p~d~eTY~HRIGRAgRF--G~~G~aVT 374 (980)
T KOG4284|consen 307 SQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVV----------NIDAPADEETYFHRIGRAGRF--GAHGAAVT 374 (980)
T ss_pred chhHHHHHHHHhhhceEEEEEecchhhccCCccccceEE----------ecCCCcchHHHHHHhhhcccc--cccceeEE
Confidence 999999999999999999999999999999999999999 999999999999999999995 79999999
Q ss_pred EeecCcH
Q 000129 1724 LCHAPRK 1730 (2114)
Q Consensus 1724 l~~~~~~ 1730 (2114)
+|...+.
T Consensus 375 ~~~~~~e 381 (980)
T KOG4284|consen 375 LLEDERE 381 (980)
T ss_pred Eeccchh
Confidence 9987764
No 122
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=2.1e-31 Score=365.66 Aligned_cols=308 Identities=19% Similarity=0.247 Sum_probs=222.8
Q ss_pred CCCHHHHHHHHHHHcC-----CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000129 495 QLNRVQSRVYKSALSS-----ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~-----~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~ 569 (2114)
.||++|.+|++.++.+ ..++|+|||||+|||.+|+.+++..+.. +.+++|++||++||.|+++.
T Consensus 600 ~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~-----------g~qvlvLvPT~eLA~Q~~~~ 668 (1147)
T PRK10689 600 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN-----------HKQVAVLVPTTLLAQQHYDN 668 (1147)
T ss_pred CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc-----------CCeEEEEeCcHHHHHHHHHH
Confidence 7999999999998876 2569999999999999999988877643 34899999999999999999
Q ss_pred HHHhhccCCcEEEEEeCCCccChhh-------hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchh
Q 000129 570 LSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPV 642 (2114)
Q Consensus 570 ~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~ 642 (2114)
|++++..+++++..++|..+...+. ...++|+|+||+. +. . ...++++++|||||+|+++ ..
T Consensus 669 f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~l---L~-~---~v~~~~L~lLVIDEahrfG----~~ 737 (1147)
T PRK10689 669 FRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKL---LQ-S---DVKWKDLGLLIVDEEHRFG----VR 737 (1147)
T ss_pred HHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHH---Hh-C---CCCHhhCCEEEEechhhcc----hh
Confidence 9999988889999999877654432 1368999999973 22 2 1346789999999999973 21
Q ss_pred HHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHH
Q 000129 643 LESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDL 722 (2114)
Q Consensus 643 le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~ 722 (2114)
.... +.....++++++||||.+. ..+...+... .+......+.....++...+..+ ... . +...
T Consensus 738 ~~e~-------lk~l~~~~qvLl~SATpip-rtl~l~~~gl-~d~~~I~~~p~~r~~v~~~~~~~--~~~-~----~k~~ 801 (1147)
T PRK10689 738 HKER-------IKAMRADVDILTLTATPIP-RTLNMAMSGM-RDLSIIATPPARRLAVKTFVREY--DSL-V----VREA 801 (1147)
T ss_pred HHHH-------HHhcCCCCcEEEEcCCCCH-HHHHHHHhhC-CCcEEEecCCCCCCCceEEEEec--CcH-H----HHHH
Confidence 1111 2234678999999999532 2232222111 12222222111112333222211 110 0 0111
Q ss_pred HHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecC
Q 000129 723 CYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHA 802 (2114)
Q Consensus 723 ~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHa 802 (2114)
...+...+++++||||+++.++.++..|..... ..+++.+||
T Consensus 802 ---il~el~r~gqv~vf~n~i~~ie~la~~L~~~~p-----------------------------------~~~v~~lHG 843 (1147)
T PRK10689 802 ---ILREILRGGQVYYLYNDVENIQKAAERLAELVP-----------------------------------EARIAIGHG 843 (1147)
T ss_pred ---HHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCC-----------------------------------CCcEEEEeC
Confidence 122333478999999999999999988875421 135788899
Q ss_pred CCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEE
Q 000129 803 GMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEG 882 (2114)
Q Consensus 803 gl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~ 882 (2114)
+|++.+|..++..|++|+++|||||+++++|||+|++++||. +++.. ++..+|+||+||+||.| ..|.|
T Consensus 844 ~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi----~~ad~-----fglaq~~Qr~GRvGR~g--~~g~a 912 (1147)
T PRK10689 844 QMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII----ERADH-----FGLAQLHQLRGRVGRSH--HQAYA 912 (1147)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEE----ecCCC-----CCHHHHHHHhhccCCCC--CceEE
Confidence 999999999999999999999999999999999999999985 33332 35678999999999976 78999
Q ss_pred EEEcCCC
Q 000129 883 IIITGHS 889 (2114)
Q Consensus 883 iil~~~~ 889 (2114)
|+++..+
T Consensus 913 ~ll~~~~ 919 (1147)
T PRK10689 913 WLLTPHP 919 (1147)
T ss_pred EEEeCCC
Confidence 9998764
No 123
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-31 Score=326.09 Aligned_cols=442 Identities=17% Similarity=0.201 Sum_probs=312.1
Q ss_pred HHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEE
Q 000129 505 KSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVREL 584 (2114)
Q Consensus 505 ~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l 584 (2114)
-..++.++.++|.|+||||||+.....+...-... ..+|.+..|+|--|..+++++..-. |..++..
T Consensus 60 l~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~----------~g~I~~TQPRRVAavslA~RVAeE~---~~~lG~~ 126 (674)
T KOG0922|consen 60 LYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFAS----------SGKIACTQPRRVAAVSLAKRVAEEM---GCQLGEE 126 (674)
T ss_pred HHHHHHCCEEEEEcCCCCCccccHhHHHHhccccc----------CCcEEeecCchHHHHHHHHHHHHHh---CCCcCce
Confidence 34567888899999999999998655554432211 1259999999999999998887643 3444444
Q ss_pred eC-CCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccE
Q 000129 585 SG-DQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRL 663 (2114)
Q Consensus 585 ~G-d~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~ri 663 (2114)
+| ...+++.....+.|.+.|.+ +++|.......++.+++||+||||. | .....++--+++.+-..+++.|+
T Consensus 127 VGY~IRFed~ts~~TrikymTDG---~LLRE~l~Dp~LskYsvIIlDEAHE----R-sl~TDiLlGlLKki~~~R~~Lkl 198 (674)
T KOG0922|consen 127 VGYTIRFEDSTSKDTRIKYMTDG---MLLREILKDPLLSKYSVIILDEAHE----R-SLHTDILLGLLKKILKKRPDLKL 198 (674)
T ss_pred eeeEEEecccCCCceeEEEecch---HHHHHHhcCCccccccEEEEechhh----h-hhHHHHHHHHHHHHHhcCCCceE
Confidence 44 22344444457999999999 6788877778899999999999995 3 33334444455555556788999
Q ss_pred EEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecCh
Q 000129 664 VGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSR 743 (2114)
Q Consensus 664 v~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr 743 (2114)
|.+|||+ |.+.+.+|+.. .+++...+...||.+ .|...+ ......+....+.+ +....+.+.+|||.+++
T Consensus 199 IimSATl-da~kfS~yF~~---a~i~~i~GR~fPVei--~y~~~p---~~dYv~a~~~tv~~-Ih~~E~~GDILvFLtGq 268 (674)
T KOG0922|consen 199 IIMSATL-DAEKFSEYFNN---APILTIPGRTFPVEI--LYLKEP---TADYVDAALITVIQ-IHLTEPPGDILVFLTGQ 268 (674)
T ss_pred EEEeeee-cHHHHHHHhcC---CceEeecCCCCceeE--EeccCC---chhhHHHHHHHHHH-HHccCCCCCEEEEeCCH
Confidence 9999998 78899999875 356666666666543 333211 12222222222222 33335577999999999
Q ss_pred HHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceE
Q 000129 744 KETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQV 823 (2114)
Q Consensus 744 ~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~V 823 (2114)
++.+.++..|.+........ .+.-+...||.|+.+++..|++.-..|..+|
T Consensus 269 eEIe~~~~~l~e~~~~~~~~-----------------------------~~~~~lply~aL~~e~Q~rvF~p~p~g~RKv 319 (674)
T KOG0922|consen 269 EEIEAACELLRERAKSLPED-----------------------------CPELILPLYGALPSEEQSRVFDPAPPGKRKV 319 (674)
T ss_pred HHHHHHHHHHHHHhhhcccc-----------------------------CcceeeeecccCCHHHhhccccCCCCCcceE
Confidence 99999999998764322110 0112456799999999999999999999999
Q ss_pred EEechHhhhhcCCCceEEEEec----ceeccCCCCcc----ccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcHHHHH
Q 000129 824 LVSTATLAWGVNLPAHTVIIKG----TQIYNPEKGAW----TELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYL 895 (2114)
Q Consensus 824 LVaT~tla~GVdlP~v~vVI~~----~~~yd~~~g~~----~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~ 895 (2114)
++||++++..|.+|++.+||+. ...|+|..|.. .++|.++..||.|||||.| +|+||.+++.++ |.
T Consensus 320 IlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~---pGkcyRLYte~~---~~ 393 (674)
T KOG0922|consen 320 ILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG---PGKCYRLYTESA---YD 393 (674)
T ss_pred EEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC---CceEEEeeeHHH---Hh
Confidence 9999999999999999999995 46799988754 6799999999999999984 899999999766 35
Q ss_pred HhhcCCCcccchhhHhhHHHHHHHHhhccccChHHHHHHHHhhHHHHhhccCCcccCCCcccccccchhhhhhHHHHHHH
Q 000129 896 SLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTA 975 (2114)
Q Consensus 896 ~ll~~~~pies~l~~~l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~a 975 (2114)
++..++.|-... ..|...+..-.++| ..||.-+. .++.+..+.+..|
T Consensus 394 ~~~~~~~PEI~R--~~Ls~~vL~Lkalg---------------------i~d~l~F~----------f~d~P~~~~l~~A 440 (674)
T KOG0922|consen 394 KMPLQTVPEIQR--VNLSSAVLQLKALG---------------------INDPLRFP----------FIDPPPPEALEEA 440 (674)
T ss_pred hcccCCCCceee--echHHHHHHHHhcC---------------------CCCcccCC----------CCCCCChHHHHHH
Confidence 555555552111 11111111111111 12232221 2333345678899
Q ss_pred HHHHhHCCCcccccCCCccccCh-hHHHHhhcccccccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChhHHHHH
Q 000129 976 ATILDRNNLVKYDRKSGYFQVTD-LGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMEL 1052 (2114)
Q Consensus 976 l~~L~~~~~i~~~~~~~~~~~T~-lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~i~s~s~ef~~i~~r~~e~~~l 1052 (2114)
+..|...|.|+.+ | .+|+ +|+.||.++++|...++++.+-+.+|+ .+++.+.|+-+ -.++..|+.++..-
T Consensus 441 L~~L~~lgald~~---g--~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~-~e~l~i~a~Ls-v~~~f~~p~~~~~~ 511 (674)
T KOG0922|consen 441 LEELYSLGALDDR---G--KLTSPLGRQMAELPLEPHLSKMLLKSSELGCS-EEILTIAAMLS-VQSVFSRPKDKKAE 511 (674)
T ss_pred HHHHHhcCcccCc---C--CcCchHHhhhhhcCCCcchhhhhhhccccCCc-chhhhheeeee-ccceecCccchhhh
Confidence 9999999999832 4 4555 999999999999999999998888887 68888887766 56777777766543
No 124
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=5.6e-31 Score=349.98 Aligned_cols=319 Identities=21% Similarity=0.332 Sum_probs=221.2
Q ss_pred CCCCCCHHHHHHHHHHHcC-----CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHH
Q 000129 1338 GFKHFNPIQTQVFTVLYNT-----DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEI 1412 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~-----~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~ 1412 (2114)
+| .||++|.+|++.++.+ ..|.+++||||||||++|++|++..+.. +. +++|++||++||.|+++.+++
T Consensus 233 pf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---g~--qvlilaPT~~LA~Q~~~~~~~ 306 (630)
T TIGR00643 233 PF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---GY--QVALMAPTEILAEQHYNSLRN 306 (630)
T ss_pred CC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---CC--cEEEECCHHHHHHHHHHHHHH
Confidence 36 6999999999999864 1368999999999999999999988765 34 899999999999999999996
Q ss_pred HhcCCCCcEEEEEcCCcccch-----hhcc--CCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHH
Q 000129 1413 KFGQGLGMRVVELTGETAMDL-----KLLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLE 1485 (2114)
Q Consensus 1413 ~f~~~~g~~v~~l~G~~~~~~-----~~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le 1485 (2114)
.++. .|+++..++|+.+... ..+. ..+|+|+||+.+. ....+++++++||||+|+++...
T Consensus 307 l~~~-~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~-------~~~~~~~l~lvVIDEaH~fg~~q----- 373 (630)
T TIGR00643 307 LLAP-LGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQ-------EKVEFKRLALVIIDEQHRFGVEQ----- 373 (630)
T ss_pred Hhcc-cCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHh-------ccccccccceEEEechhhccHHH-----
Confidence 6654 4899999999876542 2233 3599999998753 12357899999999999875321
Q ss_pred HHHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHh-cCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHH
Q 000129 1486 VIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWI-GATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTF 1564 (2114)
Q Consensus 1486 ~i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl-~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~ 1564 (2114)
...+...... ....++++||||+.. +.++..+ +..........+..| .|+...+.... .. ...+
T Consensus 374 --r~~l~~~~~~-~~~~~~l~~SATp~p-rtl~l~~~~~l~~~~i~~~p~~r-~~i~~~~~~~~--~~--------~~~~ 438 (630)
T TIGR00643 374 --RKKLREKGQG-GFTPHVLVMSATPIP-RTLALTVYGDLDTSIIDELPPGR-KPITTVLIKHD--EK--------DIVY 438 (630)
T ss_pred --HHHHHHhccc-CCCCCEEEEeCCCCc-HHHHHHhcCCcceeeeccCCCCC-CceEEEEeCcc--hH--------HHHH
Confidence 1111111100 126789999999743 3333222 211111111112112 23333322111 10 2345
Q ss_pred HHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHH-HhccceEeecCCC
Q 000129 1565 TAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKA-TLRHGVGYLHEGL 1643 (2114)
Q Consensus 1565 ~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~-~l~~gV~~~H~~l 1643 (2114)
..+...+..+++++|||++...+..+.. ....... ..+.+ ..+..|+.+||+|
T Consensus 439 ~~i~~~l~~g~q~~v~~~~i~~s~~~~~---------------------~~a~~~~-----~~L~~~~~~~~v~~lHG~m 492 (630)
T TIGR00643 439 EFIEEEIAKGRQAYVVYPLIEESEKLDL---------------------KAAEALY-----ERLKKAFPKYNVGLLHGRM 492 (630)
T ss_pred HHHHHHHHhCCcEEEEEccccccccchH---------------------HHHHHHH-----HHHHhhCCCCcEEEEeCCC
Confidence 5555555678899999998754432200 0000001 11111 2345799999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCC-CCHhHHHHhHcccCCCCCCCceEEE
Q 000129 1644 NKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTD-YPVTDLLQMMGHASRPLLDNSGKCV 1722 (2114)
Q Consensus 1644 s~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~-~s~~~~lQr~GRAGR~~~~~~G~~i 1722 (2114)
++.+|..+++.|++|+++|||||+++++|||+|++++|| +++.| ++.+.|.||+|||||. +..|.|+
T Consensus 493 ~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VI----------i~~~~r~gls~lhQ~~GRvGR~--g~~g~~i 560 (630)
T TIGR00643 493 KSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMV----------IEDAERFGLSQLHQLRGRVGRG--DHQSYCL 560 (630)
T ss_pred CHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEE----------EeCCCcCCHHHHHHHhhhcccC--CCCcEEE
Confidence 999999999999999999999999999999999999988 44444 4688999999999998 6899999
Q ss_pred EEeecC
Q 000129 1723 ILCHAP 1728 (2114)
Q Consensus 1723 il~~~~ 1728 (2114)
+++.++
T Consensus 561 l~~~~~ 566 (630)
T TIGR00643 561 LVYKNP 566 (630)
T ss_pred EEECCC
Confidence 999543
No 125
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=8e-31 Score=341.64 Aligned_cols=327 Identities=18% Similarity=0.185 Sum_probs=217.6
Q ss_pred HHHHHHHHHHHcCCCcEEEEccCCCchHHHHH---------HHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHH
Q 000129 498 RVQSRVYKSALSSADNILLCAPTGAGKTNVAV---------LTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVG 568 (2114)
Q Consensus 498 ~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~---------l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~ 568 (2114)
.+|.++++.+.+++ ++|++|+||||||.+.. ++.+..+..-. . .....++++++|||+||.|+..
T Consensus 167 ~iQ~qil~~i~~gk-dvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~-~----~~~~~~ilvt~PrreLa~qi~~ 240 (675)
T PHA02653 167 DVQLKIFEAWISRK-PVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID-P----NFIERPIVLSLPRVALVRLHSI 240 (675)
T ss_pred HHHHHHHHHHHhCC-CEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc-c----ccCCcEEEEECcHHHHHHHHHH
Confidence 48999999887664 59999999999999843 33333332110 0 1123589999999999999999
Q ss_pred HHHHhhcc---CCcEEEEEeCCCccC--hhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhH
Q 000129 569 NLSNRLQM---YDVKVRELSGDQTLT--RQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVL 643 (2114)
Q Consensus 569 ~~~~~~~~---~gi~v~~l~Gd~~~~--~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~l 643 (2114)
++.+.++. .|+.+....|+.... .......+|+|+|+.. ....++.+++|||||||.+... +..+
T Consensus 241 ~i~~~vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L---------~l~~L~~v~~VVIDEaHEr~~~-~Dll 310 (675)
T PHA02653 241 TLLKSLGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKL---------TLNKLFDYGTVIIDEVHEHDQI-GDII 310 (675)
T ss_pred HHHHHhCccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcc---------cccccccCCEEEccccccCccc-hhHH
Confidence 99876654 367788899987632 1122357899999752 1135778999999999987543 3333
Q ss_pred HHHHHHHHHHHhhccccccEEEEccccCC-hHHHHHHHhccccCceEeecCCcccccceeEEEeeccCc--hhHHHHHhh
Q 000129 644 ESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKK--PLQRFQLMN 720 (2114)
Q Consensus 644 e~iv~rl~~~~~~~~~~~riv~lSATlpn-~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~--~~~~~~~~~ 720 (2114)
..++.... ....|+++||||++. .+.+..|++. ...+..... ...|+++.++...... .......-.
T Consensus 311 L~llk~~~------~~~rq~ILmSATl~~dv~~l~~~~~~---p~~I~I~gr-t~~pV~~~yi~~~~~~~~~~~y~~~~k 380 (675)
T PHA02653 311 IAVARKHI------DKIRSLFLMTATLEDDRDRIKEFFPN---PAFVHIPGG-TLFPISEVYVKNKYNPKNKRAYIEEEK 380 (675)
T ss_pred HHHHHHhh------hhcCEEEEEccCCcHhHHHHHHHhcC---CcEEEeCCC-cCCCeEEEEeecCcccccchhhhHHHH
Confidence 33332221 122489999999973 4556666642 122222221 1245555554322110 000000001
Q ss_pred HHHHHHHHHHh--CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceE
Q 000129 721 DLCYEKVVAVA--GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFA 798 (2114)
Q Consensus 721 ~~~~~~i~~~~--~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~ 798 (2114)
..+...+.... .++++||||++++++..+++.|..... ...+.
T Consensus 381 ~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~-----------------------------------~~~v~ 425 (675)
T PHA02653 381 KNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLP-----------------------------------IYDFY 425 (675)
T ss_pred HHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcC-----------------------------------CceEE
Confidence 11122222221 256899999999999999998875420 12356
Q ss_pred EecCCCCHHHHHHHHHHH-hCCCceEEEechHhhhhcCCCceEEEEecceeccCC--CCccccCCHHHHHHhhcccCCCC
Q 000129 799 IHHAGMTRGDRQLVEDLF-GDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPE--KGAWTELSPLDIMQMLGRAGRPQ 875 (2114)
Q Consensus 799 ~hHagl~~~~R~~v~~~F-~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~--~g~~~~~s~~~~~Qr~GRAGR~g 875 (2114)
.+||+|++. +.+++.| ++|..+|||||+++++|||+|++++||+++..+.|. .|...++|.++|.||+|||||.
T Consensus 426 ~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~- 502 (675)
T PHA02653 426 IIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV- 502 (675)
T ss_pred eccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-
Confidence 779999975 4555666 789999999999999999999999999987544442 3444668999999999999997
Q ss_pred CCCceEEEEEcCCCc
Q 000129 876 YDSYGEGIIITGHSE 890 (2114)
Q Consensus 876 ~d~~G~~iil~~~~e 890 (2114)
.+|.|+.+++..+
T Consensus 503 --~~G~c~rLyt~~~ 515 (675)
T PHA02653 503 --SPGTYVYFYDLDL 515 (675)
T ss_pred --CCCeEEEEECHHH
Confidence 5799999998765
No 126
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.98 E-value=4.7e-31 Score=330.47 Aligned_cols=323 Identities=21% Similarity=0.319 Sum_probs=244.7
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.|+..|++-|.++|..++.+ +++++..|||+||++||.+|.+-. . | -+|+|+|+.+|..++++.+
T Consensus 13 fGy~~FR~gQ~evI~~~l~g-~d~lvvmPTGgGKSlCyQiPAll~--~-----G-------~TLVVSPLiSLM~DQV~~l 77 (590)
T COG0514 13 FGYASFRPGQQEIIDALLSG-KDTLVVMPTGGGKSLCYQIPALLL--E-----G-------LTLVVSPLISLMKDQVDQL 77 (590)
T ss_pred hCccccCCCHHHHHHHHHcC-CcEEEEccCCCCcchHhhhHHHhc--C-----C-------CEEEECchHHHHHHHHHHH
Confidence 48999999999999999888 459999999999999999998754 1 2 5899999999999999998
Q ss_pred HHhhccCCcEEEEEeCCCccChhh-------hccceEEEcCHhHH--HHHHhccCCCcccccccEEEEeccccccc---C
Q 000129 571 SNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKW--DIITRKSGDRTYTQLVKLLIIDEIHLLHD---N 638 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPek~--d~l~r~~~~~~~l~~v~liIiDEaH~l~d---~ 638 (2114)
... |+.+..+.+..+.+... ....++++-+||++ ..+.+.. .-..+.+++|||||++.. +
T Consensus 78 ~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L----~~~~i~l~vIDEAHCiSqWGhd 149 (590)
T COG0514 78 EAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELL----KRLPISLVAIDEAHCISQWGHD 149 (590)
T ss_pred HHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHH----HhCCCceEEechHHHHhhcCCc
Confidence 875 88888888775544332 23579999999996 2222221 134589999999999965 5
Q ss_pred CchhHHHHHHHHHHHHhhccccccEEEEccccCC--hHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHH
Q 000129 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRF 716 (2114)
Q Consensus 639 rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn--~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~ 716 (2114)
++|.+..+-.- .. .-+++.+++||||-+. ..|+..-|+.. ....+..+-.||. +...+. ...+...+
T Consensus 150 FRP~Y~~lg~l----~~-~~~~~p~~AlTATA~~~v~~DI~~~L~l~--~~~~~~~sfdRpN-i~~~v~--~~~~~~~q- 218 (590)
T COG0514 150 FRPDYRRLGRL----RA-GLPNPPVLALTATATPRVRDDIREQLGLQ--DANIFRGSFDRPN-LALKVV--EKGEPSDQ- 218 (590)
T ss_pred cCHhHHHHHHH----Hh-hCCCCCEEEEeCCCChHHHHHHHHHhcCC--CcceEEecCCCch-hhhhhh--hcccHHHH-
Confidence 77887755332 22 2348899999999764 45666666654 2223333344542 111111 00011111
Q ss_pred HHhhHHHHHHHHH--HhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhcc
Q 000129 717 QLMNDLCYEKVVA--VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLP 794 (2114)
Q Consensus 717 ~~~~~~~~~~i~~--~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~ 794 (2114)
.. .+.+ ....++.||||.||+.++.+|..|...+.
T Consensus 219 -----~~--fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~------------------------------------ 255 (590)
T COG0514 219 -----LA--FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGI------------------------------------ 255 (590)
T ss_pred -----HH--HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCC------------------------------------
Confidence 11 1221 23356789999999999999999987542
Q ss_pred CceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCC
Q 000129 795 YGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRP 874 (2114)
Q Consensus 795 ~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~ 874 (2114)
.++++||||+.++|..+++.|..+.++|+|||.++++|||-|++++||| |+.|. |+.+|.|-+|||||.
T Consensus 256 -~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH----~~lP~------s~EsYyQE~GRAGRD 324 (590)
T COG0514 256 -SAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIH----YDLPG------SIESYYQETGRAGRD 324 (590)
T ss_pred -ceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEE----ecCCC------CHHHHHHHHhhccCC
Confidence 3678899999999999999999999999999999999999999999999 88776 899999999999999
Q ss_pred CCCCceEEEEEcCCCcHHHHHHhhcCCCc
Q 000129 875 QYDSYGEGIIITGHSELRYYLSLMNQQLP 903 (2114)
Q Consensus 875 g~d~~G~~iil~~~~e~~~~~~ll~~~~p 903 (2114)
| .+..|+++++..+......++....|
T Consensus 325 G--~~a~aill~~~~D~~~~~~~i~~~~~ 351 (590)
T COG0514 325 G--LPAEAILLYSPEDIRWQRYLIEQSKP 351 (590)
T ss_pred C--CcceEEEeeccccHHHHHHHHHhhcc
Confidence 8 78999999999998777777776666
No 127
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.98 E-value=5e-31 Score=352.75 Aligned_cols=349 Identities=21% Similarity=0.252 Sum_probs=262.9
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.|+..|+++|.+|+..+.++ +|+||++|||||||.+|++||++.+.+... .++|||.||+|||++|.++|
T Consensus 66 ~g~~~lY~HQ~~A~~~~~~G-~~vvVtTgTgSGKTe~FllPIld~~l~~~~---------a~AL~lYPtnALa~DQ~~rl 135 (851)
T COG1205 66 AGIERLYSHQVDALRLIREG-RNVVVTTGTGSGKTESFLLPILDHLLRDPS---------ARALLLYPTNALANDQAERL 135 (851)
T ss_pred hccccccHHHHHHHHHHHCC-CCEEEECCCCCchhHHHHHHHHHHHhhCcC---------ccEEEEechhhhHhhHHHHH
Confidence 57888999999999987766 779999999999999999999999988643 28999999999999999999
Q ss_pred HHhhccCC--cEEEEEeCCCccChhh---hccceEEEcCHhHHHH-HHhccC-CCcccccccEEEEecccccccCCchhH
Q 000129 571 SNRLQMYD--VKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDI-ITRKSG-DRTYTQLVKLLIIDEIHLLHDNRGPVL 643 (2114)
Q Consensus 571 ~~~~~~~g--i~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~d~-l~r~~~-~~~~l~~v~liIiDEaH~l~d~rg~~l 643 (2114)
.++...++ +.+..++||...++.. .+.++|++|||.+|+. ++|... ....++++++||+||+|.+-.-+|..+
T Consensus 136 ~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~v 215 (851)
T COG1205 136 RELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEV 215 (851)
T ss_pred HHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHH
Confidence 99988777 8999999999887763 5789999999999976 555542 245567899999999999988899999
Q ss_pred HHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHH---HHhh
Q 000129 644 ESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRF---QLMN 720 (2114)
Q Consensus 644 e~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~---~~~~ 720 (2114)
..++.|+++..+..+.+.|+|+.|||+.|..+.+.-+....-. ..++.+..|-.....+............ ....
T Consensus 216 A~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~--~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~ 293 (851)
T COG1205 216 ALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFE--VPVDEDGSPRGLRYFVRREPPIRELAESIRRSALA 293 (851)
T ss_pred HHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcce--eeccCCCCCCCceEEEEeCCcchhhhhhcccchHH
Confidence 9999999999998888999999999999977766555432111 1134444444443333322211001110 1111
Q ss_pred HHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEe
Q 000129 721 DLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIH 800 (2114)
Q Consensus 721 ~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~h 800 (2114)
..-.-.-.....+-++|+|+.||+.++.++...+....... . .+..-+..|
T Consensus 294 ~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~-~----------------------------~l~~~v~~~ 344 (851)
T COG1205 294 ELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREG-G----------------------------KLLDAVSTY 344 (851)
T ss_pred HHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcc-h----------------------------hhhhheeec
Confidence 11000111122366999999999999988755544322111 0 111347889
Q ss_pred cCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCce
Q 000129 801 HAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYG 880 (2114)
Q Consensus 801 Hagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G 880 (2114)
||+|.+.+|..++..|+.|++.++++|++++-|+|+-++..||....|.+ |..+++||+|||||.+ ..+
T Consensus 345 ~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~---------s~~~~~Q~~GRaGR~~--~~~ 413 (851)
T COG1205 345 RAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGV---------SVLSFRQRAGRAGRRG--QES 413 (851)
T ss_pred cccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCc---------hHHHHHHhhhhccCCC--CCc
Confidence 99999999999999999999999999999999999999999998443332 6789999999999987 556
Q ss_pred EEEEEcCCCcH
Q 000129 881 EGIIITGHSEL 891 (2114)
Q Consensus 881 ~~iil~~~~e~ 891 (2114)
..+++...+-.
T Consensus 414 l~~~v~~~~~~ 424 (851)
T COG1205 414 LVLVVLRSDPL 424 (851)
T ss_pred eEEEEeCCCcc
Confidence 66666664433
No 128
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.98 E-value=8.1e-31 Score=328.39 Aligned_cols=327 Identities=20% Similarity=0.326 Sum_probs=253.6
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHH
Q 000129 1331 LYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDW 1410 (2114)
Q Consensus 1331 ~~~~l~~gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~ 1410 (2114)
.+..+|. +..|+|-|.++|..++++ +++++..|||+||++||.+|.+-. .| -+|+|.|..+|...+.+.+
T Consensus 8 ~L~~~fG-y~~FR~gQ~evI~~~l~g-~d~lvvmPTGgGKSlCyQiPAll~------~G--~TLVVSPLiSLM~DQV~~l 77 (590)
T COG0514 8 VLKQVFG-YASFRPGQQEIIDALLSG-KDTLVVMPTGGGKSLCYQIPALLL------EG--LTLVVSPLISLMKDQVDQL 77 (590)
T ss_pred HHHHHhC-ccccCCCHHHHHHHHHcC-CcEEEEccCCCCcchHhhhHHHhc------CC--CEEEECchHHHHHHHHHHH
Confidence 4566665 999999999999999986 559999999999999999998731 44 7899999999999999988
Q ss_pred HHHhcCCCCcEEEEEcCCcccc-----hhhccC--CcEEEEChhhHHH--HHhhhcccccccceeEEEecccccccCCCC
Q 000129 1411 EIKFGQGLGMRVVELTGETAMD-----LKLLEK--GQIIISTPEKWDA--LSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2114)
Q Consensus 1411 ~~~f~~~~g~~v~~l~G~~~~~-----~~~l~~--~~IIV~TPe~l~~--l~r~~~~~~~l~~v~liIiDEaH~l~~~~g 1481 (2114)
+. .|+.+..+.+..+.+ ...+.. -++++-+||++.. +... ..-..+.+++|||||++..| |
T Consensus 78 ~~-----~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~----L~~~~i~l~vIDEAHCiSqW-G 147 (590)
T COG0514 78 EA-----AGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLEL----LKRLPISLVAIDEAHCISQW-G 147 (590)
T ss_pred HH-----cCceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHH----HHhCCCceEEechHHHHhhc-C
Confidence 73 278899988876654 223444 3899999999743 2221 11456899999999999755 5
Q ss_pred chHHHHHHHHHHHHhhcCCCceEEEEcccCCC--hhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhc
Q 000129 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLAN--AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAM 1559 (2114)
Q Consensus 1482 ~~le~i~srl~~i~~~~~~~~riV~lSATl~n--~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~ 1559 (2114)
+.+..-..++..+...++ ++.++++|||... ..|+.+-|+.....+|. .+++.++........
T Consensus 148 hdFRP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~--------------~sfdRpNi~~~v~~~ 212 (590)
T COG0514 148 HDFRPDYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFR--------------GSFDRPNLALKVVEK 212 (590)
T ss_pred CccCHhHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEE--------------ecCCCchhhhhhhhc
Confidence 666666677777766666 8899999999765 35888888877644443 222323322222111
Q ss_pred C--HHHHHHHHH-HhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccce
Q 000129 1560 T--KPTFTAIVQ-HAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGV 1636 (2114)
Q Consensus 1560 ~--~~~~~~i~~-~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV 1636 (2114)
. ...+..+.. .....++.||||.||+.|+.+|..|... +..+
T Consensus 213 ~~~~~q~~fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~-----------------------------------g~~a 257 (590)
T COG0514 213 GEPSDQLAFLATVLPQLSKSGIIYCLTRKKVEELAEWLRKN-----------------------------------GISA 257 (590)
T ss_pred ccHHHHHHHHHhhccccCCCeEEEEeeHHhHHHHHHHHHHC-----------------------------------CCce
Confidence 1 111112222 1145667999999999999999877431 4568
Q ss_pred EeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCC
Q 000129 1637 GYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLD 1716 (2114)
Q Consensus 1637 ~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~ 1716 (2114)
++|||||+.++|..+++.|..++++|+|||..+.+|||-|++++|| |++.|.|+.+|.|-+|||||. +
T Consensus 258 ~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfVi----------H~~lP~s~EsYyQE~GRAGRD--G 325 (590)
T COG0514 258 GAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVI----------HYDLPGSIESYYQETGRAGRD--G 325 (590)
T ss_pred EEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEE----------EecCCCCHHHHHHHHhhccCC--C
Confidence 9999999999999999999999999999999999999999999999 999999999999999999998 6
Q ss_pred CceEEEEEeecCcHHHHHHHHHh
Q 000129 1717 NSGKCVILCHAPRKEYYKKFLRL 1739 (2114)
Q Consensus 1717 ~~G~~iil~~~~~~~~~~~~lRl 1739 (2114)
....|++++...+....+.++..
T Consensus 326 ~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 326 LPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred CcceEEEeeccccHHHHHHHHHh
Confidence 89999999999887776666643
No 129
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.98 E-value=3.6e-30 Score=348.55 Aligned_cols=433 Identities=14% Similarity=0.159 Sum_probs=285.3
Q ss_pred CCCCCHHHH--HHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000129 1339 FKHFNPIQT--QVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2114)
Q Consensus 1339 f~~~~~iQ~--q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~ 1416 (2114)
|..--|+.. +.|...+.+++.++|+|+||||||+.....++.. .....+ ++++..|+|-.|..++.++.+.++.
T Consensus 62 ~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~--~~~~~~--~I~~tQPRRlAA~svA~RvA~elg~ 137 (1283)
T TIGR01967 62 YPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLEL--GRGSHG--LIGHTQPRRLAARTVAQRIAEELGT 137 (1283)
T ss_pred CCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHc--CCCCCc--eEecCCccHHHHHHHHHHHHHHhCC
Confidence 333344443 4455555678889999999999999654444432 111233 8889999999999999999988876
Q ss_pred CCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEeccccc-ccCCCCchHHHHHHHHHHHH
Q 000129 1417 GLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHL-IGGQGGPVLEVIVSRMRYIA 1495 (2114)
Q Consensus 1417 ~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~-l~~~~g~~le~i~srl~~i~ 1495 (2114)
..|..|+.-.. .+.+.-.+++|+|+|||.+...+.. ...+.++++|||||||. ..+ ...++..++.+.
T Consensus 138 ~lG~~VGY~vR---~~~~~s~~T~I~~~TdGiLLr~l~~---d~~L~~~~~IIIDEaHERsL~-----~D~LL~lLk~il 206 (1283)
T TIGR01967 138 PLGEKVGYKVR---FHDQVSSNTLVKLMTDGILLAETQQ---DRFLSRYDTIIIDEAHERSLN-----IDFLLGYLKQLL 206 (1283)
T ss_pred CcceEEeeEEc---CCcccCCCceeeeccccHHHHHhhh---CcccccCcEEEEcCcchhhcc-----chhHHHHHHHHH
Confidence 56666654322 2222234678999999998766543 56789999999999993 332 222444455554
Q ss_pred hhcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccch---HHHHHhcCHHHHHHHHHHh-
Q 000129 1496 SQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNF---EARMQAMTKPTFTAIVQHA- 1571 (2114)
Q Consensus 1496 ~~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~l- 1571 (2114)
.. .++.|+|+||||+ +...++++++..+ ++.... +..|+++++........ ..... .....+....
T Consensus 207 ~~-rpdLKlIlmSATl-d~~~fa~~F~~ap--vI~V~G--r~~PVev~Y~~~~~~~~~~~~~~~~----~i~~~I~~l~~ 276 (1283)
T TIGR01967 207 PR-RPDLKIIITSATI-DPERFSRHFNNAP--IIEVSG--RTYPVEVRYRPLVEEQEDDDLDQLE----AILDAVDELFA 276 (1283)
T ss_pred hh-CCCCeEEEEeCCc-CHHHHHHHhcCCC--EEEECC--CcccceeEEecccccccchhhhHHH----HHHHHHHHHHh
Confidence 33 4578999999999 5778999997543 444333 44455555433221110 01111 1111222111
Q ss_pred cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHH
Q 000129 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2114)
Q Consensus 1572 ~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v 1651 (2114)
...+.+|||+|++++++.++..|..... ....|..+||+|+.++|..+
T Consensus 277 ~~~GdILVFLpg~~EI~~l~~~L~~~~~--------------------------------~~~~VlpLhg~Ls~~eQ~~v 324 (1283)
T TIGR01967 277 EGPGDILIFLPGEREIRDAAEILRKRNL--------------------------------RHTEILPLYARLSNKEQQRV 324 (1283)
T ss_pred hCCCCEEEeCCCHHHHHHHHHHHHhcCC--------------------------------CCcEEEeccCCCCHHHHHHH
Confidence 2457899999999999999877743210 01247889999999999999
Q ss_pred HHHHhcCCceEEEecCccccccCCCCcEEEEE-e---eeEecCCcCcC----CCCCHhHHHHhHcccCCCCCCCceEEEE
Q 000129 1652 SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVM-G---TQYYDGQENAH----TDYPVTDLLQMMGHASRPLLDNSGKCVI 1723 (2114)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~-g---t~~yd~~~~~~----~~~s~~~~lQr~GRAGR~~~~~~G~~ii 1723 (2114)
++.+ +..+|||||+++++|||+|++.+||. | ...|+.+.+.. .+.|.++|.||+|||||. ..|.||.
T Consensus 325 f~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~---~~G~cyR 399 (1283)
T TIGR01967 325 FQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV---APGICIR 399 (1283)
T ss_pred hCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCC---CCceEEE
Confidence 7654 34799999999999999999999993 2 35677664432 467889999999999996 4999999
Q ss_pred EeecCcHHHHHHHHHhccCCCCc--------------cccCCCcc-chHHHHHHHHHHHHHHHHHCCCceecCCCccccC
Q 000129 1724 LCHAPRKEYYKKFLRLTQNPNYY--------------NLQGVSHR-HLSDHLSELVENTISDLEASKCIIIEEDMDLSPS 1788 (2114)
Q Consensus 1724 l~~~~~~~~~~~~lRl~~nP~~y--------------~l~~~s~~-~l~~~lselve~~l~~L~~~~~I~~~~~~~~~~t 1788 (2114)
+++..+...... ...|... ++.++... -++..-.+.+..++..|.+.|+|+.++ .....|
T Consensus 400 Lyte~~~~~~~~----~~~PEIlR~~L~~viL~l~~lg~~di~~f~fldpP~~~~i~~A~~~L~~LGAld~~~-~~~~LT 474 (1283)
T TIGR01967 400 LYSEEDFNSRPE----FTDPEILRTNLASVILQMLALRLGDIAAFPFIEAPDPRAIRDGFRLLEELGALDDDE-AEPQLT 474 (1283)
T ss_pred ecCHHHHHhhhh----ccCcccccccHHHHHHHHHhcCCCCcccccCCCCCCHHHHHHHHHHHHHCCCCCCCC-CCcccc
Confidence 998654332221 1222211 11111110 111223578999999999999996332 125789
Q ss_pred cccchhhhcccCHhHHHHHHhhcCCCCChhhHHHHHhcCccccCCCCCcchH
Q 000129 1789 NHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEE 1840 (2114)
Q Consensus 1789 ~lG~i~s~y~i~~~T~~~f~~sl~~~~~~~~iL~ils~a~Ef~~i~vR~~E~ 1840 (2114)
++|+.++.+|++|...++++.+....+ ...++.|.|.-++ .+...|+.++
T Consensus 475 ~lGr~ma~LPldPrlarmLl~a~~~gc-l~e~l~IaA~Ls~-~dp~~~p~~~ 524 (1283)
T TIGR01967 475 PIGRQLAQLPVDPRLARMLLEAHRLGC-LQEVLIIASALSI-QDPRERPMEK 524 (1283)
T ss_pred HHHHHHhhcCCChHHHHHHHHhhhcCC-HHHHHHHHHHHcC-CCcCCCcchh
Confidence 999999999999999999998766543 3555555554333 4444455444
No 130
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.7e-30 Score=312.15 Aligned_cols=479 Identities=17% Similarity=0.179 Sum_probs=329.6
Q ss_pred HHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCC
Q 000129 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYD 578 (2114)
Q Consensus 499 iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~g 578 (2114)
+-.+.+ .++..+..++|.|.||||||+.....+...- ....+.+|-+..|.|--|..++.++.+ .+|
T Consensus 269 ykdell-~av~e~QVLiI~GeTGSGKTTQiPQyL~EaG---------ytk~gk~IgcTQPRRVAAmSVAaRVA~---EMg 335 (902)
T KOG0923|consen 269 YKDELL-KAVKEHQVLIIVGETGSGKTTQIPQYLYEAG---------YTKGGKKIGCTQPRRVAAMSVAARVAE---EMG 335 (902)
T ss_pred hHHHHH-HHHHhCcEEEEEcCCCCCccccccHHHHhcc---------cccCCceEeecCcchHHHHHHHHHHHH---HhC
Confidence 333444 4567778899999999999998655444321 222345699999999999999988876 446
Q ss_pred cEEEEEeC-CCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhc
Q 000129 579 VKVRELSG-DQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETT 657 (2114)
Q Consensus 579 i~v~~l~G-d~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~ 657 (2114)
++.+--.| ...+.+.....+-|-++|.+ +|.|.......+..+++|||||||. |.-... |+-.++..+...
T Consensus 336 vkLG~eVGYsIRFEdcTSekTvlKYMTDG---mLlREfL~epdLasYSViiiDEAHE----RTL~TD-ILfgLvKDIar~ 407 (902)
T KOG0923|consen 336 VKLGHEVGYSIRFEDCTSEKTVLKYMTDG---MLLREFLSEPDLASYSVIIVDEAHE----RTLHTD-ILFGLVKDIARF 407 (902)
T ss_pred cccccccceEEEeccccCcceeeeeecch---hHHHHHhccccccceeEEEeehhhh----hhhhhh-HHHHHHHHHHhh
Confidence 66554444 23444444567889999999 6777776668889999999999994 322233 333333444445
Q ss_pred cccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEE
Q 000129 658 KEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVL 737 (2114)
Q Consensus 658 ~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vL 737 (2114)
++..+++..|||+ +++.+..|+.. .++|.+.+.-.||.+ .|- .......+.+....+.+ |....+.+.+|
T Consensus 408 RpdLKllIsSAT~-DAekFS~fFDd---apIF~iPGRRyPVdi--~Yt---~~PEAdYldAai~tVlq-IH~tqp~GDIL 477 (902)
T KOG0923|consen 408 RPDLKLLISSATM-DAEKFSAFFDD---APIFRIPGRRYPVDI--FYT---KAPEADYLDAAIVTVLQ-IHLTQPLGDIL 477 (902)
T ss_pred CCcceEEeecccc-CHHHHHHhccC---CcEEeccCcccceee--ecc---cCCchhHHHHHHhhhee-eEeccCCccEE
Confidence 7899999999997 78999999974 457887776666544 222 22222222222211111 11223367899
Q ss_pred EEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHh
Q 000129 738 IFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFG 817 (2114)
Q Consensus 738 VFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~ 817 (2114)
||.....+.+.+...|.+....... ...+ .-|...||+|+.+.+..|++--.
T Consensus 478 VFltGQeEIEt~~e~l~~~~~~LGs-------------------------ki~e---liv~PiYaNLPselQakIFePtP 529 (902)
T KOG0923|consen 478 VFLTGQEEIETVKENLKERCRRLGS-------------------------KIRE---LIVLPIYANLPSELQAKIFEPTP 529 (902)
T ss_pred EEeccHHHHHHHHHHHHHHHHHhcc-------------------------ccce---EEEeeccccCChHHHHhhcCCCC
Confidence 9999999998888887765322111 0111 12556799999999999999999
Q ss_pred CCCceEEEechHhhhhcCCCceEEEEec----ceeccCCCCcc----ccCCHHHHHHhhcccCCCCCCCceEEEEEcCCC
Q 000129 818 DGHVQVLVSTATLAWGVNLPAHTVIIKG----TQIYNPEKGAW----TELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889 (2114)
Q Consensus 818 ~g~i~VLVaT~tla~GVdlP~v~vVI~~----~~~yd~~~g~~----~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~ 889 (2114)
.|..+|++||++++.++.++++.+||+. ...|+|.+|.. +++|.++..||+|||||.| +|+|+.+++..
T Consensus 530 ~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg---PGKCfRLYt~~ 606 (902)
T KOG0923|consen 530 PGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG---PGKCFRLYTAW 606 (902)
T ss_pred CCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC---CCceEEeechh
Confidence 9999999999999999999999999984 35689998854 7899999999999999985 89999999864
Q ss_pred cHHHHHHhhcCCCcccchhhHhhHHHHHHHHhhccccChHHHHHHHHhhHHHHhhccCCcccCCCcccccccchhhhhhH
Q 000129 890 ELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRA 969 (2114)
Q Consensus 890 e~~~~~~ll~~~~pies~l~~~l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~ 969 (2114)
.....+..+ ..| |- ....|.......-++|. .|.++| +.++.+..
T Consensus 607 aY~~eLE~~--t~P-EI-qRtnL~nvVL~LkSLGI----~Dl~~F---------------------------dFmDpPp~ 651 (902)
T KOG0923|consen 607 AYEHELEEM--TVP-EI-QRTNLGNVVLLLKSLGI----HDLIHF---------------------------DFLDPPPT 651 (902)
T ss_pred hhhhhhccC--CCc-ce-eeccchhHHHHHHhcCc----chhccc---------------------------ccCCCCCh
Confidence 422222111 112 11 11233333333333331 222221 11222334
Q ss_pred HHHHHHHHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChhHH
Q 000129 970 DLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEK 1049 (2114)
Q Consensus 970 ~li~~al~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~i~s~s~ef~~i~~r~~e~ 1049 (2114)
+.+..||+.|..+|++.- ...+|.+||.||.|+++|...+++..+-+..|+ .+++.|.||.+.+..++.|+.++
T Consensus 652 etL~~aLE~LyaLGALn~-----~GeLTk~GrrMaEfP~dPmlsKmi~as~ky~cs-~EiitiaamlS~~~svfyrpk~~ 725 (902)
T KOG0923|consen 652 ETLLKALEQLYALGALNH-----LGELTKLGRRMAEFPVDPMLSKMIVASEKYKCS-EEIITIAAMLSVGASVFYRPKDK 725 (902)
T ss_pred HHHHHHHHHHHHhhcccc-----ccchhhhhhhhhhcCCCHHHHhHHhhhccccch-HHHHHHHHHHhcCchheecchhh
Confidence 567789999999999973 358999999999999999999999988888876 89999999999999999999987
Q ss_pred HHHHHHhccCCCCCCCCCCChhHHHHHHHHHHHhcccC
Q 000129 1050 MELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKL 1087 (2114)
Q Consensus 1050 ~~l~~l~~~~~~~~~~~~~~~~~K~~~llq~~i~~~~~ 1087 (2114)
..-..-..+ + +..+.+--.++|+-|-+...-
T Consensus 726 ~v~ad~a~~---~----f~~~~gDhi~~L~vyn~w~es 756 (902)
T KOG0923|consen 726 QVHADNARK---N----FEEPVGDHIVLLNVYNQWKES 756 (902)
T ss_pred hhhhhhhhh---c----cCCCCcchhhhhHHHHHHhhc
Confidence 543321111 1 223344556788888776544
No 131
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=4.4e-31 Score=304.80 Aligned_cols=346 Identities=18% Similarity=0.253 Sum_probs=264.1
Q ss_pred ccccChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHH
Q 000129 1324 VTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEAL 1402 (2114)
Q Consensus 1324 ~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~L 1402 (2114)
-.+|+.+.++.+|. ||..|+.||+.|+..+..+.+ +++.+++|+|||.+|.+++++.+... .....|++++|+|+|
T Consensus 30 dm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~d-v~~qaqsgTgKt~af~i~iLq~iD~~--~ke~qalilaPtreL 106 (397)
T KOG0327|consen 30 DMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHD-VIAQAQSGTGKTAAFLISILQQIDMS--VKETQALILAPTREL 106 (397)
T ss_pred hcCCCHHHHhHHHhhccCCchHHHhccccccccCCc-eeEeeeccccchhhhHHHHHhhcCcc--hHHHHHHHhcchHHH
Confidence 34566788999998 899999999999999988655 99999999999999999999987553 223389999999999
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEcCCcccc--hhhcc--CCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC
Q 000129 1403 AKERYRDWEIKFGQGLGMRVVELTGETAMD--LKLLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (2114)
Q Consensus 1403 a~q~~~~~~~~f~~~~g~~v~~l~G~~~~~--~~~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~ 1478 (2114)
|.|..+... .++...+.+|..+.|+.... ...+. ..+|+|+||++...++.+. ......+.++|+||++.+.+
T Consensus 107 a~qi~~v~~-~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~--~l~~~~iKmfvlDEaDEmLs 183 (397)
T KOG0327|consen 107 AQQIQKVVR-ALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG--SLSTDGIKMFVLDEADEMLS 183 (397)
T ss_pred HHHHHHHHH-hhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc--cccccceeEEeecchHhhhc
Confidence 999997776 67777889999888876654 22233 3599999999998888762 44566799999999998876
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHH
Q 000129 1479 QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQ 1557 (2114)
Q Consensus 1479 ~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~ 1557 (2114)
.+ +...+..+..+++.+.|++++|||.+.. .++.+-+...+..+..-... ..++-..+.+....-
T Consensus 184 ~g------fkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~---ltl~gikq~~i~v~k----- 249 (397)
T KOG0327|consen 184 RG------FKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDE---LTLEGIKQFYINVEK----- 249 (397)
T ss_pred cc------hHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchh---hhhhheeeeeeeccc-----
Confidence 65 6677777888889999999999999863 34554443332211110000 001100000000000
Q ss_pred hcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceE
Q 000129 1558 AMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637 (2114)
Q Consensus 1558 ~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~ 1637 (2114)
.+.+..+........+++|||||++.+..+...|. ..++.+.
T Consensus 250 ---~~k~~~l~dl~~~~~q~~if~nt~r~v~~l~~~L~-----------------------------------~~~~~~s 291 (397)
T KOG0327|consen 250 ---EEKLDTLCDLYRRVTQAVIFCNTRRKVDNLTDKLR-----------------------------------AHGFTVS 291 (397)
T ss_pred ---cccccHHHHHHHhhhcceEEecchhhHHHHHHHHh-----------------------------------hCCceEE
Confidence 00112222222356789999999999987775552 2345688
Q ss_pred eecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCC
Q 000129 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDN 1717 (2114)
Q Consensus 1638 ~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~ 1717 (2114)
.+|+.|.+.+|..+...|++|..+|||.|+.+++|+|+..+..|| +++.|....+|+||+||+||. +.
T Consensus 292 ~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvi----------nydlP~~~~~yihR~gr~gr~--gr 359 (397)
T KOG0327|consen 292 AIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVV----------NYDLPARKENYIHRIGRAGRF--GR 359 (397)
T ss_pred EeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceee----------eeccccchhhhhhhccccccc--CC
Confidence 999999999999999999999999999999999999999999999 999999999999999999996 79
Q ss_pred ceEEEEEeecCcHHHHHHHHHh
Q 000129 1718 SGKCVILCHAPRKEYYKKFLRL 1739 (2114)
Q Consensus 1718 ~G~~iil~~~~~~~~~~~~lRl 1739 (2114)
+|.++-++.+.+...+++..+.
T Consensus 360 kg~~in~v~~~d~~~lk~ie~~ 381 (397)
T KOG0327|consen 360 KGVAINFVTEEDVRDLKDIEKF 381 (397)
T ss_pred CceeeeeehHhhHHHHHhHHHh
Confidence 9999999999888877777643
No 132
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.97 E-value=2.9e-30 Score=336.30 Aligned_cols=326 Identities=17% Similarity=0.164 Sum_probs=212.5
Q ss_pred hhHhhcCCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHH
Q 000129 485 WAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (2114)
Q Consensus 485 ~~~~~f~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~ 564 (2114)
++..+ .||+ |+|||.++++.++.+.++++++||||||||.++.++++.. .... ....+.||++|||+||.
T Consensus 7 ff~~~-~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~~-------~~~~rLv~~vPtReLa~ 76 (844)
T TIGR02621 7 WYQGL-HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIGA-------KVPRRLVYVVNRRTVVD 76 (844)
T ss_pred HHHHH-hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cccc-------cccceEEEeCchHHHHH
Confidence 34443 4887 9999999999999887778999999999999765444422 1110 11236677889999999
Q ss_pred HHHHHHHHhhccC-----------------------CcEEEEEeCCCccChhhh---ccceEEEcCHhHHHHHHhccC--
Q 000129 565 EVVGNLSNRLQMY-----------------------DVKVRELSGDQTLTRQQI---EETQIIVTTPEKWDIITRKSG-- 616 (2114)
Q Consensus 565 q~~~~~~~~~~~~-----------------------gi~v~~l~Gd~~~~~~~~---~~~~IiV~TPek~d~l~r~~~-- 616 (2114)
|+++.+.++.+.+ ++++..++|+.....+.. ..++|||+|++ .+.++..
T Consensus 77 Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D---~i~sr~L~~ 153 (844)
T TIGR02621 77 QVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVD---MIGSRLLFS 153 (844)
T ss_pred HHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHH---HHcCCcccc
Confidence 9999999877644 488999999988766543 46899999975 4433321
Q ss_pred -----------CCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEccccCC-hHHHHHHHhccc
Q 000129 617 -----------DRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNL 684 (2114)
Q Consensus 617 -----------~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn-~~dva~~l~~~~ 684 (2114)
....+++++++|+|||| +...+...++.|+..+.+ .....+.|+++||||+|. ..+....+...+
T Consensus 154 gYg~~~~~~pi~ag~L~~v~~LVLDEAD-Ld~gF~~~l~~Il~~l~r--p~~~rprQtLLFSAT~p~ei~~l~~~~~~~p 230 (844)
T TIGR02621 154 GYGCGFKSRPLHAGFLGQDALIVHDEAH-LEPAFQELLKQIMNEQQR--PPDFLPLRVVELTATSRTDGPDRTTLLSAED 230 (844)
T ss_pred ccccccccccchhhhhccceEEEEehhh-hccccHHHHHHHHHhccc--CcccccceEEEEecCCCccHHHHHHHHccCC
Confidence 11136889999999999 433565666655554210 001123689999999984 223333332221
Q ss_pred cCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccc
Q 000129 685 EKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLG 764 (2114)
Q Consensus 685 ~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~ 764 (2114)
. .+..........-..+++.... ..++..+...+.... ...++++||||||++.|..+++.|...+
T Consensus 231 ~--~i~V~~~~l~a~ki~q~v~v~~---e~Kl~~lv~~L~~ll--~e~g~~vLVF~NTv~~Aq~L~~~L~~~g------- 296 (844)
T TIGR02621 231 Y--KHPVLKKRLAAKKIVKLVPPSD---EKFLSTMVKELNLLM--KDSGGAILVFCRTVKHVRKVFAKLPKEK------- 296 (844)
T ss_pred c--eeecccccccccceEEEEecCh---HHHHHHHHHHHHHHH--hhCCCcEEEEECCHHHHHHHHHHHHhcC-------
Confidence 1 1111111111111112222111 111211111111111 1236789999999999999999987532
Q ss_pred cccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHH-----HHHHHHhC----CC-------ceEEEech
Q 000129 765 RFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ-----LVEDLFGD----GH-------VQVLVSTA 828 (2114)
Q Consensus 765 ~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~-----~v~~~F~~----g~-------i~VLVaT~ 828 (2114)
+..+||+|++.+|. .+++.|++ |. .+|||||+
T Consensus 297 --------------------------------~~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATd 344 (844)
T TIGR02621 297 --------------------------------FELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTS 344 (844)
T ss_pred --------------------------------CeEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccc
Confidence 34569999999999 78999987 44 78999999
Q ss_pred HhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEE
Q 000129 829 TLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885 (2114)
Q Consensus 829 tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil 885 (2114)
++++|||++. .+||+ +.. +..+|+||+||+||.|....+.++++
T Consensus 345 VaerGLDId~-d~VI~----d~a--------P~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 345 AGEVGVNISA-DHLVC----DLA--------PFESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred hhhhcccCCc-ceEEE----CCC--------CHHHHHHHhcccCCCCCCCCceEEEE
Confidence 9999999998 56665 222 35689999999999885433434444
No 133
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.6e-31 Score=307.70 Aligned_cols=347 Identities=20% Similarity=0.290 Sum_probs=267.1
Q ss_pred CCcccccChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEccc
Q 000129 1321 PLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPL 1399 (2114)
Q Consensus 1321 p~~~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Pt 1399 (2114)
.++...|....++++.. ||..|+|+|++.+|.++++.+ ++-.|-||||||.||.+|+++++.... ..+.|++++.|+
T Consensus 22 ~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~d-vv~martgsgktaaf~ipm~e~Lk~~s-~~g~Ralilspt 99 (529)
T KOG0337|consen 22 GFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRD-VVGMARTGSGKTAAFLIPMIEKLKSHS-QTGLRALILSPT 99 (529)
T ss_pred CccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccc-cceeeecCCcchhhHHHHHHHHHhhcc-ccccceeeccCc
Confidence 34556677788888876 799999999999999999777 999999999999999999999999865 556799999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchh--hc-cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccc
Q 000129 1400 EALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK--LL-EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 1476 (2114)
Q Consensus 1400 r~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~--~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l 1476 (2114)
++|+.|+.+.++ .+++..+++.+.++|+.+...+ .+ .++|||++||+++..+.-.. ...++.|.+||+||++.|
T Consensus 100 reLa~qtlkvvk-dlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem--~l~l~sveyVVfdEadrl 176 (529)
T KOG0337|consen 100 RELALQTLKVVK-DLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEM--TLTLSSVEYVVFDEADRL 176 (529)
T ss_pred HHHHHHHHHHHH-HhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhe--eccccceeeeeehhhhHH
Confidence 999999999888 7999889999988887665532 33 46799999999987665542 346899999999999998
Q ss_pred cCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHH
Q 000129 1477 GGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARM 1556 (2114)
Q Consensus 1477 ~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~ 1556 (2114)
.+.+ +..++..+..+++...|.++||||+|+. +.++-.+.. ..|+-+...+..--........
T Consensus 177 femg------fqeql~e~l~rl~~~~QTllfSatlp~~--lv~fakaGl---------~~p~lVRldvetkise~lk~~f 239 (529)
T KOG0337|consen 177 FEMG------FQEQLHEILSRLPESRQTLLFSATLPRD--LVDFAKAGL---------VPPVLVRLDVETKISELLKVRF 239 (529)
T ss_pred Hhhh------hHHHHHHHHHhCCCcceEEEEeccCchh--hHHHHHccC---------CCCceEEeehhhhcchhhhhhe
Confidence 7665 7788888888888889999999999854 444443332 1222222211111111111111
Q ss_pred HhcCH----HHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHh
Q 000129 1557 QAMTK----PTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL 1632 (2114)
Q Consensus 1557 ~~~~~----~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l 1632 (2114)
....+ .....++......++++|||+|+..++.+...| ...
T Consensus 240 ~~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll-----------------------------------~~~ 284 (529)
T KOG0337|consen 240 FRVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLL-----------------------------------RDF 284 (529)
T ss_pred eeeccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHH-----------------------------------Hhc
Confidence 11111 112222222233457999999999997766433 223
Q ss_pred ccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCC
Q 000129 1633 RHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASR 1712 (2114)
Q Consensus 1633 ~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR 1712 (2114)
+.++..++|.|.+..|..-...|+.++..+||.|++++||+|+|-..-|| +++.|....-|+||+||+.|
T Consensus 285 g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvi----------nyd~p~~~klFvhRVgr~ar 354 (529)
T KOG0337|consen 285 GGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVI----------NYDFPPDDKLFVHRVGRVAR 354 (529)
T ss_pred CCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccc----------cccCCCCCceEEEEecchhh
Confidence 55678899999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCCCCceEEEEEeecCcHHHHHHH
Q 000129 1713 PLLDNSGKCVILCHAPRKEYYKKF 1736 (2114)
Q Consensus 1713 ~~~~~~G~~iil~~~~~~~~~~~~ 1736 (2114)
+ +..|.+|.++.+.+..|+-.+
T Consensus 355 a--grtg~aYs~V~~~~~~yl~DL 376 (529)
T KOG0337|consen 355 A--GRTGRAYSLVASTDDPYLLDL 376 (529)
T ss_pred c--cccceEEEEEecccchhhhhh
Confidence 8 689999999998876665433
No 134
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=5.2e-31 Score=337.04 Aligned_cols=346 Identities=21% Similarity=0.315 Sum_probs=254.6
Q ss_pred CCcccccChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc---CCCceEEEEE
Q 000129 1321 PLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS---ETGVMRAVYI 1396 (2114)
Q Consensus 1321 p~~~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~---~~~~~k~l~I 1396 (2114)
.|....+....+..+-. ||..++|||.||+|+++.+++ ||..|-||||||++|.||+++|..... .+.+|.++++
T Consensus 366 sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrd-vIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~ 444 (997)
T KOG0334|consen 366 SWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRD-VIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALIL 444 (997)
T ss_pred hHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcc-eEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEE
Confidence 33344555556666633 688999999999999999777 999999999999999999999887642 2336799999
Q ss_pred cccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccc--hhhcc-CCcEEEEChhhHHHHHhhhccc-ccccceeEEEecc
Q 000129 1397 APLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD--LKLLE-KGQIIISTPEKWDALSRRWKQR-KYVQQVSLFIIDE 1472 (2114)
Q Consensus 1397 ~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~--~~~l~-~~~IIV~TPe~l~~l~r~~~~~-~~l~~v~liIiDE 1472 (2114)
+|||+|+.|+.+.++ .|.+.+|+++++.+|+.... ...++ .+.|+||||++...++-....+ .++.++.++|+||
T Consensus 445 aPtrela~QI~r~~~-kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~de 523 (997)
T KOG0334|consen 445 APTRELAMQIHREVR-KFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDE 523 (997)
T ss_pred cCCHHHHHHHHHHHH-HHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeech
Confidence 999999999999888 78888999999999987765 22333 4599999999987766543333 2667777999999
Q ss_pred cccccCCC-CchHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHHHhcCCCCceeecCCCC--CccCcEEEEeccc
Q 000129 1473 LHLIGGQG-GPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGV--RPVPLEIHIQGVD 1548 (2114)
Q Consensus 1473 aH~l~~~~-g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~wl~~~~~~~~~f~~~~--rpv~l~~~~~~~~ 1548 (2114)
||.+.+.+ -|..-. |...+++..|.+++|||++.. ..++.-.-..+..+..-..+. .-+...+.+....
T Consensus 524 aDrmfdmgfePq~~~-------Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e 596 (997)
T KOG0334|consen 524 ADRMFDMGFEPQITR-------ILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIE 596 (997)
T ss_pred hhhhheeccCcccch-------HHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCc
Confidence 99998643 333222 334446789999999999874 234443332222211111000 1111122222111
Q ss_pred ccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHH
Q 000129 1549 ITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEML 1628 (2114)
Q Consensus 1549 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L 1628 (2114)
...+.. ...++......+++||||.+...|..+...|..
T Consensus 597 ~eKf~k---------L~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~-------------------------------- 635 (997)
T KOG0334|consen 597 NEKFLK---------LLELLGERYEDGKTIIFVDKQEKADALLRDLQK-------------------------------- 635 (997)
T ss_pred hHHHHH---------HHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHh--------------------------------
Confidence 111111 122222225689999999999999999888753
Q ss_pred HHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHc
Q 000129 1629 KATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMG 1708 (2114)
Q Consensus 1629 ~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~G 1708 (2114)
.++.+..+|||.++.+|..+++.|++|.+.+||||+++++|+|++...+|| ||++|--..+|+||+|
T Consensus 636 ---ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvv----------nyd~pnh~edyvhR~g 702 (997)
T KOG0334|consen 636 ---AGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVV----------NYDFPNHYEDYVHRVG 702 (997)
T ss_pred ---cCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEE----------EcccchhHHHHHHHhc
Confidence 122344589999999999999999999999999999999999999999999 8999999999999999
Q ss_pred ccCCCCCCCceEEEEEeecCcHH
Q 000129 1709 HASRPLLDNSGKCVILCHAPRKE 1731 (2114)
Q Consensus 1709 RAGR~~~~~~G~~iil~~~~~~~ 1731 (2114)
|+||+ +..|.|+.|..+.+..
T Consensus 703 RTgra--grkg~AvtFi~p~q~~ 723 (997)
T KOG0334|consen 703 RTGRA--GRKGAAVTFITPDQLK 723 (997)
T ss_pred ccccC--CccceeEEEeChHHhh
Confidence 99999 6899999999885443
No 135
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.7e-29 Score=310.06 Aligned_cols=423 Identities=16% Similarity=0.161 Sum_probs=307.3
Q ss_pred HcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccch
Q 000129 1354 YNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL 1433 (2114)
Q Consensus 1354 l~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~ 1433 (2114)
++.++.++|.|+||||||+.....+.+.-.. ..| ++.|..|+|--|..++++.....+..+|-.|+...-- +.
T Consensus 63 ve~nqvlIviGeTGsGKSTQipQyL~eaG~~--~~g--~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRF---ed 135 (674)
T KOG0922|consen 63 VEDNQVLIVIGETGSGKSTQIPQYLAEAGFA--SSG--KIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRF---ED 135 (674)
T ss_pred HHHCCEEEEEcCCCCCccccHhHHHHhcccc--cCC--cEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEEe---cc
Confidence 3568889999999999999876666654333 244 6999999999999999999988887777777665431 11
Q ss_pred hhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCC
Q 000129 1434 KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (2114)
Q Consensus 1434 ~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n 1513 (2114)
..-..+.|.+.|.+. ++|.....+.+..+++||+|||| +|.-.-..++.-++.+.+. +++.++|.+|||+ |
T Consensus 136 ~ts~~TrikymTDG~---LLRE~l~Dp~LskYsvIIlDEAH----ERsl~TDiLlGlLKki~~~-R~~LklIimSATl-d 206 (674)
T KOG0922|consen 136 STSKDTRIKYMTDGM---LLREILKDPLLSKYSVIILDEAH----ERSLHTDILLGLLKKILKK-RPDLKLIIMSATL-D 206 (674)
T ss_pred cCCCceeEEEecchH---HHHHHhcCCccccccEEEEechh----hhhhHHHHHHHHHHHHHhc-CCCceEEEEeeee-c
Confidence 122366899999998 55666668899999999999999 4445556678888877654 5689999999999 8
Q ss_pred hhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHH
Q 000129 1514 AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVD 1593 (2114)
Q Consensus 1514 ~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~ 1593 (2114)
++.|++|++..+ ++.. ..|..|+++.+...+..+|..... .....|... .+.+.+|||.+++++.+.++..
T Consensus 207 a~kfS~yF~~a~--i~~i--~GR~fPVei~y~~~p~~dYv~a~~----~tv~~Ih~~-E~~GDILvFLtGqeEIe~~~~~ 277 (674)
T KOG0922|consen 207 AEKFSEYFNNAP--ILTI--PGRTFPVEILYLKEPTADYVDAAL----ITVIQIHLT-EPPGDILVFLTGQEEIEAACEL 277 (674)
T ss_pred HHHHHHHhcCCc--eEee--cCCCCceeEEeccCCchhhHHHHH----HHHHHHHcc-CCCCCEEEEeCCHHHHHHHHHH
Confidence 999999998843 4444 346667777776655555544321 112223333 5667899999999999999988
Q ss_pred HHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccc
Q 000129 1594 LMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGV 1673 (2114)
Q Consensus 1594 L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gv 1673 (2114)
|.+......... ..-+..+||.|+.+++..|+..-..|..+|++||++++.++
T Consensus 278 l~e~~~~~~~~~---------------------------~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSl 330 (674)
T KOG0922|consen 278 LRERAKSLPEDC---------------------------PELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSL 330 (674)
T ss_pred HHHHhhhccccC---------------------------cceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeE
Confidence 866543222110 01267899999999999999999999999999999999999
Q ss_pred CCCCcEEEE----EeeeEecCCcCcC----CCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHHHHH--------
Q 000129 1674 PLTAHLVVV----MGTQYYDGQENAH----TDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFL-------- 1737 (2114)
Q Consensus 1674 dip~~~vVI----~gt~~yd~~~~~~----~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~~~l-------- 1737 (2114)
.+|++.+|| .....|+++.+.+ .|.|.++..||.||||| ..+|+|+.++.+.+. .++.
T Consensus 331 TI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGR---t~pGkcyRLYte~~~---~~~~~~~~PEI~ 404 (674)
T KOG0922|consen 331 TIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGR---TGPGKCYRLYTESAY---DKMPLQTVPEIQ 404 (674)
T ss_pred EecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCC---CCCceEEEeeeHHHH---hhcccCCCCcee
Confidence 999999999 3457888886654 48899999999999999 469999999987654 3333
Q ss_pred HhccCCCCc-----cccCCC-ccchHHHHHHHHHHHHHHHHHCCCceecCCCccccCc-ccchhhhcccCHhHHHHHHhh
Q 000129 1738 RLTQNPNYY-----NLQGVS-HRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSN-HGMIASYYYISYTTIERFSSS 1810 (2114)
Q Consensus 1738 Rl~~nP~~y-----~l~~~s-~~~l~~~lselve~~l~~L~~~~~I~~~~~~~~~~t~-lG~i~s~y~i~~~T~~~f~~s 1810 (2114)
|....+... ++.++- ..-++..-.+.+..++..|...|+|+- ++ ..|+ +|..|+.++++|...++++.+
T Consensus 405 R~~Ls~~vL~Lkalgi~d~l~F~f~d~P~~~~l~~AL~~L~~lgald~--~g--~lt~p~G~~ma~~Pl~p~lsk~ll~s 480 (674)
T KOG0922|consen 405 RVNLSSAVLQLKALGINDPLRFPFIDPPPPEALEEALEELYSLGALDD--RG--KLTSPLGRQMAELPLEPHLSKMLLKS 480 (674)
T ss_pred eechHHHHHHHHhcCCCCcccCCCCCCCChHHHHHHHHHHHhcCcccC--cC--CcCchHHhhhhhcCCCcchhhhhhhc
Confidence 111001111 111111 111222345788999999999999952 22 3444 999999999999999999986
Q ss_pred cCCCCChhhHHHHHhcCccccCCCCCcchH
Q 000129 1811 LTPKTRMKGLLEVLASASEYAQLPIRPGEE 1840 (2114)
Q Consensus 1811 l~~~~~~~~iL~ils~a~Ef~~i~vR~~E~ 1840 (2114)
-...+. .+++.|.|.-+ -.++-.|..+.
T Consensus 481 ~~~gc~-~e~l~i~a~Ls-v~~~f~~p~~~ 508 (674)
T KOG0922|consen 481 SELGCS-EEILTIAAMLS-VQSVFSRPKDK 508 (674)
T ss_pred cccCCc-chhhhheeeee-ccceecCccch
Confidence 655554 56666666544 44554554443
No 136
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.97 E-value=1e-29 Score=331.26 Aligned_cols=390 Identities=15% Similarity=0.103 Sum_probs=241.6
Q ss_pred HHHHHHHHHHHcCCCcEEEEecCCCchHHHH---------HHHHHHHhhhcc-CCCceEEEEEcccHHHHHHHHHHHHHH
Q 000129 1344 PIQTQVFTVLYNTDDNVLVAAPTGSGKTICS---------EFAILRNHQKAS-ETGVMRAVYIAPLEALAKERYRDWEIK 1413 (2114)
Q Consensus 1344 ~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~---------~l~il~~l~~~~-~~~~~k~l~I~Ptr~La~q~~~~~~~~ 1413 (2114)
.+|.++++.+.+++ ++++.|+||||||.+. +++.+..+.... .....+++|++|||+||.|+..++.+.
T Consensus 167 ~iQ~qil~~i~~gk-dvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~ 245 (675)
T PHA02653 167 DVQLKIFEAWISRK-PVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKS 245 (675)
T ss_pred HHHHHHHHHHHhCC-CEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHH
Confidence 47899999998755 5999999999999973 334444432211 112238999999999999999998865
Q ss_pred hcC--CCCcEEEEEcCCcccch--hhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHH
Q 000129 1414 FGQ--GLGMRVVELTGETAMDL--KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVS 1489 (2114)
Q Consensus 1414 f~~--~~g~~v~~l~G~~~~~~--~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~s 1489 (2114)
.+- ..|..+....|+.+... ......+|+|+|++. ....+.++++||+||||...... .. ++.
T Consensus 246 vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L---------~l~~L~~v~~VVIDEaHEr~~~~-Dl---lL~ 312 (675)
T PHA02653 246 LGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKL---------TLNKLFDYGTVIIDEVHEHDQIG-DI---IIA 312 (675)
T ss_pred hCccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcc---------cccccccCCEEEccccccCccch-hH---HHH
Confidence 542 24677888888876431 122355899999753 11247889999999999875432 22 333
Q ss_pred HHHHHHhhcCCCceEEEEcccCCC-hhHHHHHhcCCCCceeecCCCCCccCcEEEEeccccc-ch-HHHHHhcCHHHHHH
Q 000129 1490 RMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDIT-NF-EARMQAMTKPTFTA 1566 (2114)
Q Consensus 1490 rl~~i~~~~~~~~riV~lSATl~n-~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~-~~-~~~~~~~~~~~~~~ 1566 (2114)
.++... +...|+++||||++. .+.+..|++... .+.... ....|++.+....... .. ..............
T Consensus 313 llk~~~---~~~rq~ILmSATl~~dv~~l~~~~~~p~--~I~I~g-rt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~ 386 (675)
T PHA02653 313 VARKHI---DKIRSLFLMTATLEDDRDRIKEFFPNPA--FVHIPG-GTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTA 386 (675)
T ss_pred HHHHhh---hhcCEEEEEccCCcHhHHHHHHHhcCCc--EEEeCC-CcCCCeEEEEeecCcccccchhhhHHHHHHHHHH
Confidence 333222 223489999999974 567888887432 333322 1124455443221110 00 00000001112222
Q ss_pred HHHHh-cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCH
Q 000129 1567 IVQHA-KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNK 1645 (2114)
Q Consensus 1567 i~~~l-~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~ 1645 (2114)
+.... ..++++|||||++.+|..++..|.... .+..+..+||+|++
T Consensus 387 L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~---------------------------------~~~~v~~LHG~Lsq 433 (675)
T PHA02653 387 LKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRL---------------------------------PIYDFYIIHGKVPN 433 (675)
T ss_pred HHHhhcccCCcEEEEECcHHHHHHHHHHHHhhc---------------------------------CCceEEeccCCcCH
Confidence 22221 235689999999999999887663211 12458899999997
Q ss_pred HHHHHHHHHH-hcCCceEEEecCccccccCCCCcEEEEEeeeEe--cCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEE
Q 000129 1646 TDQEVVSALF-EAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYY--DGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCV 1722 (2114)
Q Consensus 1646 ~dR~~v~~~F-~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~y--d~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~i 1722 (2114)
. ..+++.| ++|+.+|||||+++++|||+|++.+||-....+ +.......+.|.++|.||+|||||. .+|.|+
T Consensus 434 ~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~G~c~ 508 (675)
T PHA02653 434 I--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---SPGTYV 508 (675)
T ss_pred H--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC---CCCeEE
Confidence 5 4556666 789999999999999999999999999221101 1111234567999999999999995 689999
Q ss_pred EEeecCcHHHHHHHH-----HhccCCCCccccCCCccchHHHHHHHHHHHHHHHHHCCCceecCCCccccCcc--cchhh
Q 000129 1723 ILCHAPRKEYYKKFL-----RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNH--GMIAS 1795 (2114)
Q Consensus 1723 il~~~~~~~~~~~~l-----Rl~~nP~~y~l~~~s~~~l~~~lselve~~l~~L~~~~~I~~~~~~~~~~t~l--G~i~s 1795 (2114)
.+++......+++.. .+...-...|+......-++..-.+.++.|++.|...|+.. + ..|.+ |+-++
T Consensus 509 rLyt~~~~~pI~ri~~~~L~~~vL~lk~~g~~~~~~~~ldpP~~~~l~~A~~~L~~lga~~--~----~l~~l~~~~~~~ 582 (675)
T PHA02653 509 YFYDLDLLKPIKRIDSEFLHNYILYAKYFNLTLPEDLFVIPSNLDRLRKTEEYIDSFNISI--E----KWYEILSNYYVN 582 (675)
T ss_pred EEECHHHhHHHHHHhHHHHHHHHHHHHHcCCCCcccccCCCCCHHHHHHHHHHHHHcCCCc--h----hhhhhhccccHH
Confidence 999876533222221 00000001122111111122223578999999999999752 2 35555 65555
Q ss_pred hc
Q 000129 1796 YY 1797 (2114)
Q Consensus 1796 ~y 1797 (2114)
..
T Consensus 583 ~~ 584 (675)
T PHA02653 583 ML 584 (675)
T ss_pred HH
Confidence 54
No 137
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=5.1e-30 Score=308.06 Aligned_cols=441 Identities=17% Similarity=0.166 Sum_probs=321.9
Q ss_pred CHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEE
Q 000129 1343 NPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRV 1422 (2114)
Q Consensus 1343 ~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v 1422 (2114)
.++-.+.+.++ +.++.++|.|.||||||+.....+...=.. .++.++-|..|+|..|..++.+..+.++..+|..|
T Consensus 267 y~ykdell~av-~e~QVLiI~GeTGSGKTTQiPQyL~EaGyt---k~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eV 342 (902)
T KOG0923|consen 267 YPYKDELLKAV-KEHQVLIIVGETGSGKTTQIPQYLYEAGYT---KGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEV 342 (902)
T ss_pred hhhHHHHHHHH-HhCcEEEEEcCCCCCccccccHHHHhcccc---cCCceEeecCcchHHHHHHHHHHHHHhCccccccc
Confidence 44455556555 458889999999999998765555432222 22325889999999999999999988876666666
Q ss_pred EEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCc
Q 000129 1423 VELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKI 1502 (2114)
Q Consensus 1423 ~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~ 1502 (2114)
+.-.. .....-.++-|-++|.|+ |+|.....+.+.++++||||||| +|......++..++.|.+. ++++
T Consensus 343 GYsIR---FEdcTSekTvlKYMTDGm---LlREfL~epdLasYSViiiDEAH----ERTL~TDILfgLvKDIar~-RpdL 411 (902)
T KOG0923|consen 343 GYSIR---FEDCTSEKTVLKYMTDGM---LLREFLSEPDLASYSVIIVDEAH----ERTLHTDILFGLVKDIARF-RPDL 411 (902)
T ss_pred ceEEE---eccccCcceeeeeecchh---HHHHHhccccccceeEEEeehhh----hhhhhhhHHHHHHHHHHhh-CCcc
Confidence 54322 111122456788999998 56666667889999999999999 3334445577777777654 6899
Q ss_pred eEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeC
Q 000129 1503 RIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVP 1582 (2114)
Q Consensus 1503 riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~ 1582 (2114)
+++..|||+ +++.|..|++..+ +|.++. |..|+.+++...+..++...... ....|... .+.+.+|||..
T Consensus 412 KllIsSAT~-DAekFS~fFDdap--IF~iPG--RRyPVdi~Yt~~PEAdYldAai~----tVlqIH~t-qp~GDILVFlt 481 (902)
T KOG0923|consen 412 KLLISSATM-DAEKFSAFFDDAP--IFRIPG--RRYPVDIFYTKAPEADYLDAAIV----TVLQIHLT-QPLGDILVFLT 481 (902)
T ss_pred eEEeecccc-CHHHHHHhccCCc--EEeccC--cccceeeecccCCchhHHHHHHh----hheeeEec-cCCccEEEEec
Confidence 999999998 8999999998765 677655 55566677666555555432210 01111112 45688999999
Q ss_pred ChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceE
Q 000129 1583 SRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKV 1662 (2114)
Q Consensus 1583 sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~V 1662 (2114)
.....+.+...|...+..-+..-+ ..-|..+|+.|+.+.+..|++.-..|..+|
T Consensus 482 GQeEIEt~~e~l~~~~~~LGski~--------------------------eliv~PiYaNLPselQakIFePtP~gaRKV 535 (902)
T KOG0923|consen 482 GQEEIETVKENLKERCRRLGSKIR--------------------------ELIVLPIYANLPSELQAKIFEPTPPGARKV 535 (902)
T ss_pred cHHHHHHHHHHHHHHHHHhccccc--------------------------eEEEeeccccCChHHHHhhcCCCCCCceeE
Confidence 999988887777555432222111 112788999999999999999999999999
Q ss_pred EEecCccccccCCCCcEEEE----EeeeEecCCcCc----CCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHH
Q 000129 1663 CVMSSSMCWGVPLTAHLVVV----MGTQYYDGQENA----HTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYK 1734 (2114)
Q Consensus 1663 LVaT~~la~Gvdip~~~vVI----~gt~~yd~~~~~----~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~ 1734 (2114)
++||++++.++.|+++.+|| .....|+++++. -.|+|.++..||+|||||. .+|+|+.+++. ..|.
T Consensus 536 VLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRt---gPGKCfRLYt~---~aY~ 609 (902)
T KOG0923|consen 536 VLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRT---GPGKCFRLYTA---WAYE 609 (902)
T ss_pred EEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCC---CCCceEEeech---hhhh
Confidence 99999999999999999999 233567777554 4589999999999999995 59999999974 4566
Q ss_pred HHHHhccCCCCc---------cccCCCccchHH------HHHHHHHHHHHHHHHCCCceecCCCccccCcccchhhhccc
Q 000129 1735 KFLRLTQNPNYY---------NLQGVSHRHLSD------HLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYI 1799 (2114)
Q Consensus 1735 ~~lRl~~nP~~y---------~l~~~s~~~l~~------~lselve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~i 1799 (2114)
+.+....-|... .|+++...++-. ...+.+-++|..|...|++.- ....|.+|+.|+.||+
T Consensus 610 ~eLE~~t~PEIqRtnL~nvVL~LkSLGI~Dl~~FdFmDpPp~etL~~aLE~LyaLGALn~----~GeLTk~GrrMaEfP~ 685 (902)
T KOG0923|consen 610 HELEEMTVPEIQRTNLGNVVLLLKSLGIHDLIHFDFLDPPPTETLLKALEQLYALGALNH----LGELTKLGRRMAEFPV 685 (902)
T ss_pred hhhccCCCcceeeccchhHHHHHHhcCcchhcccccCCCCChHHHHHHHHHHHHhhcccc----ccchhhhhhhhhhcCC
Confidence 666554444322 112222222221 235778889999999999943 4568999999999999
Q ss_pred CHhHHHHHHhhcCCCCChhhHHHHHhcCccccCCCCCcchHHHHHH
Q 000129 1800 SYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRR 1845 (2114)
Q Consensus 1800 ~~~T~~~f~~sl~~~~~~~~iL~ils~a~Ef~~i~vR~~E~~~l~~ 1845 (2114)
+|...+++..+-+..++ .+|+.|.|..+.+..+..|+.+...-+.
T Consensus 686 dPmlsKmi~as~ky~cs-~EiitiaamlS~~~svfyrpk~~~v~ad 730 (902)
T KOG0923|consen 686 DPMLSKMIVASEKYKCS-EEIITIAAMLSVGASVFYRPKDKQVHAD 730 (902)
T ss_pred CHHHHhHHhhhccccch-HHHHHHHHHHhcCchheecchhhhhhhh
Confidence 99999999987777755 7899999999999999999888655433
No 138
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.97 E-value=8.2e-30 Score=316.91 Aligned_cols=301 Identities=21% Similarity=0.246 Sum_probs=200.0
Q ss_pred HHHHHHHHHHcCCC-cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhcc-
Q 000129 499 VQSRVYKSALSSAD-NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQM- 576 (2114)
Q Consensus 499 iQ~~~i~~~l~~~~-nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~- 576 (2114)
+|.++++.+++++. +++++||||||||.+|+++++.. ..+++|++|+++|+.|+++++.+.+..
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~--------------~~~~~~~~P~~aL~~~~~~~~~~~~~~~ 66 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG--------------ENDTIALYPTNALIEDQTEAIKEFVDVF 66 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc--------------CCCEEEEeChHHHHHHHHHHHHHHHHhc
Confidence 49999999998875 68999999999999999998842 126899999999999999999998753
Q ss_pred ---CCcEEEEEeCCCccChh-----------------------hhccceEEEcCHhHHHHHHhccCC------Ccccccc
Q 000129 577 ---YDVKVRELSGDQTLTRQ-----------------------QIEETQIIVTTPEKWDIITRKSGD------RTYTQLV 624 (2114)
Q Consensus 577 ---~gi~v~~l~Gd~~~~~~-----------------------~~~~~~IiV~TPek~d~l~r~~~~------~~~l~~v 624 (2114)
.++.+..++|+...+.+ ....++|++|||+.|+.++|.+.. ..++..+
T Consensus 67 ~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~ 146 (357)
T TIGR03158 67 KPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKF 146 (357)
T ss_pred CCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCC
Confidence 36778888887322200 013578999999999988876421 1246889
Q ss_pred cEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhcc--ccCceEeecC---------
Q 000129 625 KLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN--LEKGLFYFDN--------- 693 (2114)
Q Consensus 625 ~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~--~~~~~~~f~~--------- 693 (2114)
++|||||+|.+.......+...+.. ...++......|+++||||+|. .+..++... ....+....+
T Consensus 147 ~~iV~DE~H~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~i~lSAT~~~--~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~ 223 (357)
T TIGR03158 147 STVIFDEFHLYDAKQLVGMLFLLAY-MQLIRFFECRRKFVFLSATPDP--ALILRLQNAKQAGVKIAPIDGEKYQFPDNP 223 (357)
T ss_pred CEEEEecccccCcccchhhhhhhHH-HHHHHhhhcCCcEEEEecCCCH--HHHHHHHhccccCceeeeecCcccccCCCh
Confidence 9999999999875333333322221 1222222335799999999873 445554421 1111111111
Q ss_pred ---------Ccccc--cceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccc
Q 000129 694 ---------SYRPV--PLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDT 762 (2114)
Q Consensus 694 ---------~~rpv--~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~ 762 (2114)
.+||+ ++...+.. ........+..+.+.+.+.+ +...++++||||+|++.++.++..|++.+..
T Consensus 224 ~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~-~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~--- 298 (357)
T TIGR03158 224 ELEADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERF-RQLPGERGAIILDSLDEVNRLSDLLQQQGLG--- 298 (357)
T ss_pred hhhccccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHH-hccCCCeEEEEECCHHHHHHHHHHHhhhCCC---
Confidence 23443 33333332 11111111111212111111 1124679999999999999999999764211
Q ss_pred cccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEE
Q 000129 763 LGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVI 842 (2114)
Q Consensus 763 l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vV 842 (2114)
..+..+||.+++.+|..+ +..+|||||+++++|||+|.+. |
T Consensus 299 --------------------------------~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~~-v 339 (357)
T TIGR03158 299 --------------------------------DDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRDW-L 339 (357)
T ss_pred --------------------------------ceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCce-E
Confidence 235678999999998654 4789999999999999999874 4
Q ss_pred EecceeccCCCCccccCCHHHHHHhhcccC
Q 000129 843 IKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (2114)
Q Consensus 843 I~~~~~yd~~~g~~~~~s~~~~~Qr~GRAG 872 (2114)
| ++|. +..+|+||+||+|
T Consensus 340 i-----~~p~-------~~~~yiqR~GR~g 357 (357)
T TIGR03158 340 I-----FSAR-------DAAAFWQRLGRLG 357 (357)
T ss_pred E-----ECCC-------CHHHHhhhcccCC
Confidence 4 2332 6779999999998
No 139
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.97 E-value=7.6e-30 Score=341.48 Aligned_cols=352 Identities=20% Similarity=0.256 Sum_probs=264.6
Q ss_pred HHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHH
Q 000129 1332 YEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDW 1410 (2114)
Q Consensus 1332 ~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~ 1410 (2114)
...+.. |+..|+++|.+|+..+.++ +|+||+.|||||||.||++||++++.+ .+.. ++|||.||+|||+.+.+++
T Consensus 60 ~~~l~~~g~~~lY~HQ~~A~~~~~~G-~~vvVtTgTgSGKTe~FllPIld~~l~-~~~a--~AL~lYPtnALa~DQ~~rl 135 (851)
T COG1205 60 KSALVKAGIERLYSHQVDALRLIREG-RNVVVTTGTGSGKTESFLLPILDHLLR-DPSA--RALLLYPTNALANDQAERL 135 (851)
T ss_pred HHHHHHhccccccHHHHHHHHHHHCC-CCEEEECCCCCchhHHHHHHHHHHHhh-CcCc--cEEEEechhhhHhhHHHHH
Confidence 334433 6777999999999999885 679999999999999999999999998 3444 8999999999999999999
Q ss_pred HHHhcCCC-CcEEEEEcCCcccchh---hccCCcEEEEChhhHHH-HHhhhcccc-cccceeEEEecccccccCCCCchH
Q 000129 1411 EIKFGQGL-GMRVVELTGETAMDLK---LLEKGQIIISTPEKWDA-LSRRWKQRK-YVQQVSLFIIDELHLIGGQGGPVL 1484 (2114)
Q Consensus 1411 ~~~f~~~~-g~~v~~l~G~~~~~~~---~l~~~~IIV~TPe~l~~-l~r~~~~~~-~l~~v~liIiDEaH~l~~~~g~~l 1484 (2114)
++...... ++++..++|++....+ .-+.++|+++||.+|.. ++|.+.... .++++++||+||+|.+.+-.|..+
T Consensus 136 ~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~v 215 (851)
T COG1205 136 RELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEV 215 (851)
T ss_pred HHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHH
Confidence 95444442 4889999999988755 24566999999999988 444432222 467799999999999998889999
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHH--HhcCHH
Q 000129 1485 EVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARM--QAMTKP 1562 (2114)
Q Consensus 1485 e~i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~--~~~~~~ 1562 (2114)
..++.|++.+....+.+.|+|+.|||++|..+++.-+........ +..+..|-.....+...+........ ......
T Consensus 216 A~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~-v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~ 294 (851)
T COG1205 216 ALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVP-VDEDGSPRGLRYFVRREPPIRELAESIRRSALAE 294 (851)
T ss_pred HHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcceee-ccCCCCCCCceEEEEeCCcchhhhhhcccchHHH
Confidence 999999999999888999999999999998877765544433331 33344444444443333321111111 011111
Q ss_pred HHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCC
Q 000129 1563 TFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEG 1642 (2114)
Q Consensus 1563 ~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ 1642 (2114)
.-..+...+..+-++|+|+.+++.++.++..........+ ..+...|..||++
T Consensus 295 ~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~---------------------------~~l~~~v~~~~~~ 347 (851)
T COG1205 295 LATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREG---------------------------GKLLDAVSTYRAG 347 (851)
T ss_pred HHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcc---------------------------hhhhhheeecccc
Confidence 1222233446788999999999999888744432221111 1123458999999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCC-CHhHHHHhHcccCCCCCCCceEE
Q 000129 1643 LNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDY-PVTDLLQMMGHASRPLLDNSGKC 1721 (2114)
Q Consensus 1643 ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~-s~~~~lQr~GRAGR~~~~~~G~~ 1721 (2114)
|...+|..++..|+.|++.++++|++++-|+|+-++..|| ....|. +..++.||+|||||.+ ..+..
T Consensus 348 ~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi----------~~g~P~~s~~~~~Q~~GRaGR~~--~~~l~ 415 (851)
T COG1205 348 LHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVI----------AYGYPGVSVLSFRQRAGRAGRRG--QESLV 415 (851)
T ss_pred CCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHh----------hcCCCCchHHHHHHhhhhccCCC--CCceE
Confidence 9999999999999999999999999999999999999999 566777 8999999999999984 45555
Q ss_pred EEEeec
Q 000129 1722 VILCHA 1727 (2114)
Q Consensus 1722 iil~~~ 1727 (2114)
++....
T Consensus 416 ~~v~~~ 421 (851)
T COG1205 416 LVVLRS 421 (851)
T ss_pred EEEeCC
Confidence 554443
No 140
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.97 E-value=1.1e-29 Score=330.82 Aligned_cols=320 Identities=19% Similarity=0.213 Sum_probs=203.9
Q ss_pred HHHHhc---CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHH
Q 000129 1332 YEALYQ---GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYR 1408 (2114)
Q Consensus 1332 ~~~l~~---gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~ 1408 (2114)
|..+|. ||. |+|||.++++.++.+.++++++||||||||.++..+++..... ....-+.||++|||+||.|+++
T Consensus 4 f~~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~--~~~~~rLv~~vPtReLa~Qi~~ 80 (844)
T TIGR02621 4 FDEWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIG--AKVPRRLVYVVNRRTVVDQVTE 80 (844)
T ss_pred HHHHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcccccc--ccccceEEEeCchHHHHHHHHH
Confidence 444443 687 9999999999999887779999999999999665444422111 1111155678899999999999
Q ss_pred HHHHHhcCCC-----------------------CcEEEEEcCCcccc--hhhc-cCCcEEEEChhhHHHHHhhhc-----
Q 000129 1409 DWEIKFGQGL-----------------------GMRVVELTGETAMD--LKLL-EKGQIIISTPEKWDALSRRWK----- 1457 (2114)
Q Consensus 1409 ~~~~~f~~~~-----------------------g~~v~~l~G~~~~~--~~~l-~~~~IIV~TPe~l~~l~r~~~----- 1457 (2114)
.+. ++++.+ ++++..++|+.+.+ ...+ ..++|||+|++.+. ++..
T Consensus 81 ~~~-~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~---sr~L~~gYg 156 (844)
T TIGR02621 81 EAE-KIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIG---SRLLFSGYG 156 (844)
T ss_pred HHH-HHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHc---CCccccccc
Confidence 988 455432 47899999998765 2333 34599999965432 2211
Q ss_pred --------ccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhc--CC---CceEEEEcccCCC-hhHHHHHhcC
Q 000129 1458 --------QRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQV--EN---KIRIVALSTSLAN-AKDLGEWIGA 1523 (2114)
Q Consensus 1458 --------~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~--~~---~~riV~lSATl~n-~~dla~wl~~ 1523 (2114)
....+.++.++|+|||| +. .. +...+..|.+.+ +. +.|+++||||++. ..++...+..
T Consensus 157 ~~~~~~pi~ag~L~~v~~LVLDEAD-Ld-~g------F~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~ 228 (844)
T TIGR02621 157 CGFKSRPLHAGFLGQDALIVHDEAH-LE-PA------FQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSA 228 (844)
T ss_pred cccccccchhhhhccceEEEEehhh-hc-cc------cHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHcc
Confidence 00136889999999999 32 22 223333333321 22 3699999999975 2344444443
Q ss_pred CCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHH-HhcCCCCEEEEeCChHHHHHHHHHHHHhhccCC
Q 000129 1524 TSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQ-HAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDG 1602 (2114)
Q Consensus 1524 ~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~ 1602 (2114)
.+. .+.........+-..++ +.... ..... .....+.. ....++++||||||++.|+.++..|..
T Consensus 229 ~p~-~i~V~~~~l~a~ki~q~--v~v~~-e~Kl~----~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~------ 294 (844)
T TIGR02621 229 EDY-KHPVLKKRLAAKKIVKL--VPPSD-EKFLS----TMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPK------ 294 (844)
T ss_pred CCc-eeecccccccccceEEE--EecCh-HHHHH----HHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHh------
Confidence 321 11111111111000111 11111 00110 01111111 113567899999999999999977632
Q ss_pred cccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHH-----HHHHHHhc----CC-------ceEEEec
Q 000129 1603 DQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQE-----VVSALFEA----GK-------IKVCVMS 1666 (2114)
Q Consensus 1603 ~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~-----~v~~~F~~----g~-------i~VLVaT 1666 (2114)
.++..+||+|++.+|. .+++.|++ |. .+|||||
T Consensus 295 -------------------------------~g~~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVAT 343 (844)
T TIGR02621 295 -------------------------------EKFELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCT 343 (844)
T ss_pred -------------------------------cCCeEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEecc
Confidence 2347899999999999 88999987 54 7899999
Q ss_pred CccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEE
Q 000129 1667 SSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVIL 1724 (2114)
Q Consensus 1667 ~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil 1724 (2114)
+++++|||++.. +|| +.. .+..+|+||+||+||.|....+.++++
T Consensus 344 dVaerGLDId~d-~VI----------~d~--aP~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 344 SAGEVGVNISAD-HLV----------CDL--APFESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred chhhhcccCCcc-eEE----------ECC--CCHHHHHHHhcccCCCCCCCCceEEEE
Confidence 999999999984 555 222 457999999999999864333434444
No 141
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=2.8e-31 Score=305.80 Aligned_cols=332 Identities=19% Similarity=0.272 Sum_probs=258.2
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.||+.|+|||.+.+|.++++.+ ++..|-||||||.||++|+++.+..+. ..+.+++++.|+++|+.|..+.+
T Consensus 39 kg~~~ptpiqRKTipliLe~~d-vv~martgsgktaaf~ipm~e~Lk~~s-------~~g~RalilsptreLa~qtlkvv 110 (529)
T KOG0337|consen 39 KGFNTPTPIQRKTIPLILEGRD-VVGMARTGSGKTAAFLIPMIEKLKSHS-------QTGLRALILSPTRELALQTLKVV 110 (529)
T ss_pred hhcCCCCchhcccccceeeccc-cceeeecCCcchhhHHHHHHHHHhhcc-------ccccceeeccCcHHHHHHHHHHH
Confidence 7999999999999999999877 999999999999999999999998774 24579999999999999999999
Q ss_pred HHhhccCCcEEEEEeCCCccChhhh---ccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-CCchhHHHH
Q 000129 571 SNRLQMYDVKVRELSGDQTLTRQQI---EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESI 646 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~~---~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~i 646 (2114)
+...+..++++..++|+.+..++.. .+++||++||+++-.+.-... ..++.|.+||+||++.|.+ ++.+.+..+
T Consensus 111 kdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~--l~l~sveyVVfdEadrlfemgfqeql~e~ 188 (529)
T KOG0337|consen 111 KDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMT--LTLSSVEYVVFDEADRLFEMGFQEQLHEI 188 (529)
T ss_pred HHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhee--ccccceeeeeehhhhHHHhhhhHHHHHHH
Confidence 9988888899998999888777643 479999999998643333322 4678899999999999988 588888888
Q ss_pred HHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEee-cCCcccc-cceeEEEeeccCchhHHHHHhhHHHH
Q 000129 647 VARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYF-DNSYRPV-PLSQQYIGIQVKKPLQRFQLMNDLCY 724 (2114)
Q Consensus 647 v~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f-~~~~rpv-~l~~~~~~~~~~~~~~~~~~~~~~~~ 724 (2114)
++|+ +...|.++||||+| .++..|.+.....++.+- +-..+-. .++..+..+ ++..+ ... +.
T Consensus 189 l~rl-------~~~~QTllfSatlp--~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~--~~a~K-~aa----Ll 252 (529)
T KOG0337|consen 189 LSRL-------PESRQTLLFSATLP--RDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRV--RKAEK-EAA----LL 252 (529)
T ss_pred HHhC-------CCcceEEEEeccCc--hhhHHHHHccCCCCceEEeehhhhcchhhhhheeee--ccHHH-HHH----HH
Confidence 8876 55669999999999 567777776554443321 1111111 111122211 11111 111 11
Q ss_pred HHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCC
Q 000129 725 EKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGM 804 (2114)
Q Consensus 725 ~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl 804 (2114)
..+.......+++|||.|+..++.+...|...+... ...+|.|
T Consensus 253 ~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~-------------------------------------s~iyssl 295 (529)
T KOG0337|consen 253 SILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEG-------------------------------------SDIYSSL 295 (529)
T ss_pred HHHhccccccceeEEecccchHHHHHHHHHhcCCCc-------------------------------------ccccccc
Confidence 122233345699999999999999888887765443 3448999
Q ss_pred CHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEE
Q 000129 805 TRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGII 884 (2114)
Q Consensus 805 ~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~ii 884 (2114)
++..|..-...|+.++..+||.|++++||+|+|-..-||+++.|-++. -|+||+||+.|+| ..|.+|-
T Consensus 296 D~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~k----------lFvhRVgr~arag--rtg~aYs 363 (529)
T KOG0337|consen 296 DQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDK----------LFVHRVGRVARAG--RTGRAYS 363 (529)
T ss_pred ChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCc----------eEEEEecchhhcc--ccceEEE
Confidence 999999999999999999999999999999999999999966666555 3999999999988 7899999
Q ss_pred EcCCCcHHHHHHh
Q 000129 885 ITGHSELRYYLSL 897 (2114)
Q Consensus 885 l~~~~e~~~~~~l 897 (2114)
++..++..|+..+
T Consensus 364 ~V~~~~~~yl~DL 376 (529)
T KOG0337|consen 364 LVASTDDPYLLDL 376 (529)
T ss_pred EEecccchhhhhh
Confidence 9999888777654
No 142
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.2e-30 Score=301.36 Aligned_cols=333 Identities=21% Similarity=0.365 Sum_probs=247.8
Q ss_pred hHhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHH
Q 000129 486 AQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (2114)
Q Consensus 486 ~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~ 564 (2114)
++..| -||++|+.||+.||..++.+.+ +++.|++|+|||.+|.+++++.+.... ....+++++|+++|++
T Consensus 38 Lrgiy~yGFekPSaIQqraI~p~i~G~d-v~~qaqsgTgKt~af~i~iLq~iD~~~--------ke~qalilaPtreLa~ 108 (397)
T KOG0327|consen 38 LRGIYAYGFEKPSAIQQRAILPCIKGHD-VIAQAQSGTGKTAAFLISILQQIDMSV--------KETQALILAPTRELAQ 108 (397)
T ss_pred HhHHHhhccCCchHHHhccccccccCCc-eeEeeeccccchhhhHHHHHhhcCcch--------HHHHHHHhcchHHHHH
Confidence 34444 6999999999999999888754 999999999999999999999874432 3457999999999999
Q ss_pred HHHHHHHHhhccCCcEEEEEeCCCccChh--hh--ccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccccccc-C
Q 000129 565 EVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QI--EETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-N 638 (2114)
Q Consensus 565 q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~--~~--~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~ 638 (2114)
|+.+.....+...+++|..+.|+.....+ .+ ..++|+|+||++. +.+.+. ......++++|+||++.+.. +
T Consensus 109 qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~---~l~~~~iKmfvlDEaDEmLs~g 185 (397)
T KOG0327|consen 109 QIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG---SLSTDGIKMFVLDEADEMLSRG 185 (397)
T ss_pred HHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc---cccccceeEEeecchHhhhccc
Confidence 99988888888889999999998776532 22 3579999999996 555554 24567799999999998876 6
Q ss_pred CchhHHHHHHHHHHHHhhccccccEEEEccccCC-hHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHH
Q 000129 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQ 717 (2114)
Q Consensus 639 rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn-~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~ 717 (2114)
+...+..|... .++++|++++|||+|. ..++++-...++.. +..-.....--...+.++.+.... ++.
T Consensus 186 fkdqI~~if~~-------lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~-i~vkk~~ltl~gikq~~i~v~k~~---k~~ 254 (397)
T KOG0327|consen 186 FKDQIYDIFQE-------LPSDVQVVLLSATMPSDVLEVTKKFMREPVR-ILVKKDELTLEGIKQFYINVEKEE---KLD 254 (397)
T ss_pred hHHHHHHHHHH-------cCcchhheeecccCcHHHHHHHHHhccCceE-EEecchhhhhhheeeeeeeccccc---ccc
Confidence 66666666554 4788999999999985 23333322222111 111111111111222333222221 222
Q ss_pred HhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCce
Q 000129 718 LMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGF 797 (2114)
Q Consensus 718 ~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv 797 (2114)
.+.+ +|+ .-.|.+|||||++.+..+...|...+. -+
T Consensus 255 ~l~d-l~~------~~~q~~if~nt~r~v~~l~~~L~~~~~-------------------------------------~~ 290 (397)
T KOG0327|consen 255 TLCD-LYR------RVTQAVIFCNTRRKVDNLTDKLRAHGF-------------------------------------TV 290 (397)
T ss_pred HHHH-HHH------hhhcceEEecchhhHHHHHHHHhhCCc-------------------------------------eE
Confidence 2222 111 356899999999999999988865442 24
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCC
Q 000129 798 AIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD 877 (2114)
Q Consensus 798 ~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d 877 (2114)
...|+.|.+.+|..+.+.|+.|..+|||.|+.+|+|+|+-.+.+||+ |+.|. ...+|+||+||+||-|
T Consensus 291 s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvin----ydlP~------~~~~yihR~gr~gr~g-- 358 (397)
T KOG0327|consen 291 SAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVN----YDLPA------RKENYIHRIGRAGRFG-- 358 (397)
T ss_pred EEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeee----ecccc------chhhhhhhcccccccC--
Confidence 56699999999999999999999999999999999999999999999 55554 4567999999999966
Q ss_pred CceEEEEEcCCCcHHHHHHh
Q 000129 878 SYGEGIIITGHSELRYYLSL 897 (2114)
Q Consensus 878 ~~G~~iil~~~~e~~~~~~l 897 (2114)
.+|.++-+++..+...+.+.
T Consensus 359 rkg~~in~v~~~d~~~lk~i 378 (397)
T KOG0327|consen 359 RKGVAINFVTEEDVRDLKDI 378 (397)
T ss_pred CCceeeeeehHhhHHHHHhH
Confidence 88999999998776666553
No 143
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.97 E-value=7.1e-30 Score=333.55 Aligned_cols=429 Identities=19% Similarity=0.214 Sum_probs=303.4
Q ss_pred HHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEE
Q 000129 502 RVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKV 581 (2114)
Q Consensus 502 ~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v 581 (2114)
..|-.+++.+..++|+||||||||+...+.++..... .+.+|+++.|.|--|..+++++.+.++ .++
T Consensus 56 ~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~----------~~g~I~~tQPRRlAArsvA~RvAeel~---~~~ 122 (845)
T COG1643 56 DEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLG----------IAGKIGCTQPRRLAARSVAERVAEELG---EKL 122 (845)
T ss_pred HHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcc----------cCCeEEecCchHHHHHHHHHHHHHHhC---CCc
Confidence 4455667778889999999999999988887776541 233899999999989999999887654 444
Q ss_pred EEEeC-CCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhcccc
Q 000129 582 RELSG-DQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEH 660 (2114)
Q Consensus 582 ~~l~G-d~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~ 660 (2114)
+...| ...++......+.|-++|.+ +++|.......++.+++|||||+|. |.-...-++.-+.......+++
T Consensus 123 G~~VGY~iRfe~~~s~~Trik~mTdG---iLlrei~~D~~Ls~ys~vIiDEaHE----RSl~tDilLgllk~~~~~rr~D 195 (845)
T COG1643 123 GETVGYSIRFESKVSPRTRIKVMTDG---ILLREIQNDPLLSGYSVVIIDEAHE----RSLNTDILLGLLKDLLARRRDD 195 (845)
T ss_pred CceeeEEEEeeccCCCCceeEEeccH---HHHHHHhhCcccccCCEEEEcchhh----hhHHHHHHHHHHHHHHhhcCCC
Confidence 44444 23344444568999999999 6777776667899999999999994 5555555666555555556668
Q ss_pred ccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHh--CCCeEEE
Q 000129 661 IRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVA--GKHQVLI 738 (2114)
Q Consensus 661 ~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~vLV 738 (2114)
.|+|.||||+ |.+.++.+++. .+++...+...||. ..|...... ... +...+...+..+. +.+.+||
T Consensus 196 LKiIimSATl-d~~rfs~~f~~---apvi~i~GR~fPVe--i~Y~~~~~~--d~~---l~~ai~~~v~~~~~~~~GdILv 264 (845)
T COG1643 196 LKLIIMSATL-DAERFSAYFGN---APVIEIEGRTYPVE--IRYLPEAEA--DYI---LLDAIVAAVDIHLREGSGSILV 264 (845)
T ss_pred ceEEEEeccc-CHHHHHHHcCC---CCEEEecCCccceE--EEecCCCCc--chh---HHHHHHHHHHHhccCCCCCEEE
Confidence 9999999998 67899999974 34556565555544 333221111 110 1222222233332 2689999
Q ss_pred EecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhC
Q 000129 739 FVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGD 818 (2114)
Q Consensus 739 Fv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~ 818 (2114)
|.+...+...+++.|.+..... ..-|..+||.|+.+++..+++--..
T Consensus 265 FLpG~~EI~~~~~~L~~~~l~~---------------------------------~~~i~PLy~~L~~~eQ~rvF~p~~~ 311 (845)
T COG1643 265 FLPGQREIERTAEWLEKAELGD---------------------------------DLEILPLYGALSAEEQVRVFEPAPG 311 (845)
T ss_pred ECCcHHHHHHHHHHHHhccccC---------------------------------CcEEeeccccCCHHHHHhhcCCCCC
Confidence 9999999999999998721110 1125677999999999999998888
Q ss_pred CCceEEEechHhhhhcCCCceEEEEecc----eeccCCCCcc----ccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCc
Q 000129 819 GHVQVLVSTATLAWGVNLPAHTVIIKGT----QIYNPEKGAW----TELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890 (2114)
Q Consensus 819 g~i~VLVaT~tla~GVdlP~v~vVI~~~----~~yd~~~g~~----~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e 890 (2114)
|..+|++||++++.++.+|++++||+.. ..||+.+|.. +++|.++..||.|||||. .+|.||.+++.++
T Consensus 312 ~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~---~pGicyRLyse~~ 388 (845)
T COG1643 312 GKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRT---GPGICYRLYSEED 388 (845)
T ss_pred CcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccC---CCceEEEecCHHH
Confidence 9888999999999999999999999963 5788887743 679999999999999998 4899999999744
Q ss_pred HHHHHHhhcCCCcccchhhHhhHHHHHHHHhhccccChHHHHHHHHhhHHHHhhccCCcccCCCcccccccchhhhhhHH
Q 000129 891 LRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRAD 970 (2114)
Q Consensus 891 ~~~~~~ll~~~~pies~l~~~l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~ 970 (2114)
|..+...+.| +.++..|.. .+-.+ ..+|+.. +...=+.++.+-..
T Consensus 389 ---~~~~~~~t~P------EIlrtdLs~------------~vL~l-------------~~~G~~~-d~~~f~fld~P~~~ 433 (845)
T COG1643 389 ---FLAFPEFTLP------EILRTDLSG------------LVLQL-------------KSLGIGQ-DIAPFPFLDPPPEA 433 (845)
T ss_pred ---HHhcccCCCh------hhhhcchHH------------HHHHH-------------HhcCCCC-CcccCccCCCCChH
Confidence 3344444333 222222211 11110 0112210 00111334444456
Q ss_pred HHHHHHHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHHHHhhcCCCCCHHHHHHHhhCCcc
Q 000129 971 LVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEE 1038 (2114)
Q Consensus 971 li~~al~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~i~s~s~e 1038 (2114)
.+..|+..|...|+++.+ | .+|++|+.||.++++|+-+++...+-..+|. .+++.|.|+-++
T Consensus 434 ~i~~A~~~L~~LGAld~~---g--~LT~lG~~ms~lpldprLA~mLl~a~~~g~~-~e~~~Ias~Ls~ 495 (845)
T COG1643 434 AIQAALTLLQELGALDDS---G--KLTPLGKQMSLLPLDPRLARMLLTAPEGGCL-GEAATIASMLSE 495 (845)
T ss_pred HHHHHHHHHHHcCCcCCC---C--CCCHHHHHHHhCCCChHHHHHHHhccccCcH-HHHHHHHHhhcc
Confidence 788999999999999844 2 5999999999999999999999988776664 566666665544
No 144
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.4e-29 Score=303.82 Aligned_cols=454 Identities=16% Similarity=0.165 Sum_probs=313.5
Q ss_pred HHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhc-cC
Q 000129 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MY 577 (2114)
Q Consensus 499 iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~-~~ 577 (2114)
.+.+.+. .+..++.++|.+.||||||......++..-.. .+..+.+..|.|.-|..+++++..-.+ .+
T Consensus 360 ~R~~ll~-~ir~n~vvvivgETGSGKTTQl~QyL~edGY~----------~~GmIGcTQPRRvAAiSVAkrVa~EM~~~l 428 (1042)
T KOG0924|consen 360 CRDQLLS-VIRENQVVVIVGETGSGKTTQLAQYLYEDGYA----------DNGMIGCTQPRRVAAISVAKRVAEEMGVTL 428 (1042)
T ss_pred HHHHHHH-HHhhCcEEEEEecCCCCchhhhHHHHHhcccc----------cCCeeeecCchHHHHHHHHHHHHHHhCCcc
Confidence 4555554 45667779999999999999865554433111 223788999999999999999887442 33
Q ss_pred CcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhc
Q 000129 578 DVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETT 657 (2114)
Q Consensus 578 gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~ 657 (2114)
|-.|+.. ..+++-....+.|-+.|.+ +|+|.......+.++++||+||||. |.-.. .|+--+++.+-..
T Consensus 429 G~~VGYs---IRFEdvT~~~T~IkymTDG---iLLrEsL~d~~L~kYSviImDEAHE----RslNt-DilfGllk~~lar 497 (1042)
T KOG0924|consen 429 GDTVGYS---IRFEDVTSEDTKIKYMTDG---ILLRESLKDRDLDKYSVIIMDEAHE----RSLNT-DILFGLLKKVLAR 497 (1042)
T ss_pred ccccceE---EEeeecCCCceeEEEeccc---hHHHHHhhhhhhhheeEEEechhhh----cccch-HHHHHHHHHHHHh
Confidence 3333322 2233333356889999999 6777776567788999999999995 22222 2333344444445
Q ss_pred cccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEE
Q 000129 658 KEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVL 737 (2114)
Q Consensus 658 ~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vL 737 (2114)
..+.++|..|||+ |++.++.|++. .+.|+..+...||.+. +...+ ......+...... .|......+.+|
T Consensus 498 RrdlKliVtSATm-~a~kf~nfFgn---~p~f~IpGRTyPV~~~--~~k~p---~eDYVeaavkq~v-~Ihl~~~~Gdil 567 (1042)
T KOG0924|consen 498 RRDLKLIVTSATM-DAQKFSNFFGN---CPQFTIPGRTYPVEIM--YTKTP---VEDYVEAAVKQAV-QIHLSGPPGDIL 567 (1042)
T ss_pred hccceEEEeeccc-cHHHHHHHhCC---CceeeecCCccceEEE--eccCc---hHHHHHHHHhhhe-EeeccCCCCCEE
Confidence 6799999999998 78999999983 3467777766666543 21111 1111111111100 011222357899
Q ss_pred EEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHh
Q 000129 738 IFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFG 817 (2114)
Q Consensus 738 VFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~ 817 (2114)
||...+..++-++..+........... .-...|...++.|+..-+..+++.-.
T Consensus 568 IfmtGqediE~t~~~i~~~l~ql~~~~---------------------------~~~L~vlpiYSQLp~dlQ~kiFq~a~ 620 (1042)
T KOG0924|consen 568 IFMTGQEDIECTCDIIKEKLEQLDSAP---------------------------TTDLAVLPIYSQLPADLQAKIFQKAE 620 (1042)
T ss_pred EecCCCcchhHHHHHHHHHHHhhhcCC---------------------------CCceEEEeehhhCchhhhhhhcccCC
Confidence 999999999999888876543321110 01123667799999999999999999
Q ss_pred CCCceEEEechHhhhhcCCCceEEEEec----ceeccCCCCc----cccCCHHHHHHhhcccCCCCCCCceEEEEEcCCC
Q 000129 818 DGHVQVLVSTATLAWGVNLPAHTVIIKG----TQIYNPEKGA----WTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889 (2114)
Q Consensus 818 ~g~i~VLVaT~tla~GVdlP~v~vVI~~----~~~yd~~~g~----~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~ 889 (2114)
.|..+++|||++++..+.+|++.+||+. -.+|++..|. ..++|.+...||.|||||.| +|.||.+++..
T Consensus 621 ~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~---pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 621 GGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG---PGTCYRLYTED 697 (1042)
T ss_pred CCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC---Ccceeeehhhh
Confidence 9999999999999999999999999984 4679998873 37899999999999999974 89999999863
Q ss_pred cHHHHHHhhcCCCcccchhhHhhHHHHHHHHhhccccChHHHHHHHHhhHHHHhhccCCcccCCCcccccccchhhhhhH
Q 000129 890 ELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRA 969 (2114)
Q Consensus 890 e~~~~~~ll~~~~pies~l~~~l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~ 969 (2114)
. |...++..+.| +..+.++..-+.+-..-.++|+.+| . .+..+..
T Consensus 698 a--y~~eml~stvP------EIqRTNl~nvVLlLkslgV~dll~F---d------------------------FmD~Ppe 742 (1042)
T KOG0924|consen 698 A--YKNEMLPSTVP------EIQRTNLSNVVLLLKSLGVDDLLKF---D------------------------FMDPPPE 742 (1042)
T ss_pred H--HHhhcccCCCc------hhhhcchhhHHHHHHhcChhhhhCC---C------------------------cCCCCHH
Confidence 3 33445555554 2222233222222222223343322 1 1223344
Q ss_pred HHHHHHHHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChhHH
Q 000129 970 DLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEK 1049 (2114)
Q Consensus 970 ~li~~al~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~i~s~s~ef~~i~~r~~e~ 1049 (2114)
+.+.+++..|...|+|.. ...+|++|+.|+.|+++|...++++-+..-+|+ .|+|.|+|+-+- ..|+.|+.|+
T Consensus 743 d~~~~sly~Lw~LGAl~~-----~g~LT~lG~~MvefpLDP~lsKmll~a~~~Gc~-dEilsIvSmLSv-p~VF~rpker 815 (1042)
T KOG0924|consen 743 DNLLNSLYQLWTLGALDN-----TGQLTPLGRKMVEFPLDPPLSKMLLMAARMGCS-DEILSIVSMLSV-PAVFYRPKER 815 (1042)
T ss_pred HHHHHHHHHHHHhhcccc-----CCccchhhHHhhhCCCCchHHHHHHHHhccCcH-HHHHHHHHHhcc-cceeeccccc
Confidence 678899999999999974 248999999999999999999999988777776 799999998765 5788998888
Q ss_pred HHHHHHh
Q 000129 1050 MELAKLL 1056 (2114)
Q Consensus 1050 ~~l~~l~ 1056 (2114)
.+-..+.
T Consensus 816 ~eead~a 822 (1042)
T KOG0924|consen 816 EEEADAA 822 (1042)
T ss_pred hhhhhhH
Confidence 7766554
No 145
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.97 E-value=7.2e-30 Score=321.15 Aligned_cols=302 Identities=18% Similarity=0.213 Sum_probs=196.4
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccCh-
Q 000129 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR- 592 (2114)
Q Consensus 514 vlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~- 592 (2114)
++++||||||||.+|++++++.+.... ..+++|++|+++|+.|+++++...++. .++.++|+.....
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~~~---------~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~ 69 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKSQK---------ADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRI 69 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhCC---------CCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHH
Confidence 799999999999999999998875432 238999999999999999999997653 4555555432100
Q ss_pred --------------------hhhccceEEEcCHhHH-HHHHhccCC-Ccccc--cccEEEEecccccccCCchhHHHHHH
Q 000129 593 --------------------QQIEETQIIVTTPEKW-DIITRKSGD-RTYTQ--LVKLLIIDEIHLLHDNRGPVLESIVA 648 (2114)
Q Consensus 593 --------------------~~~~~~~IiV~TPek~-d~l~r~~~~-~~~l~--~v~liIiDEaH~l~d~rg~~le~iv~ 648 (2114)
.....++|+|+||+++ ..+.+.... ...+. ..++|||||+|.+.+.....+..++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~ 149 (358)
T TIGR01587 70 KEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLE 149 (358)
T ss_pred hccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0112468999999996 333331111 01111 23789999999987642222333333
Q ss_pred HHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCccccc---ceeEEEeeccCchhHHHHHhhHHHHH
Q 000129 649 RTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVP---LSQQYIGIQVKKPLQRFQLMNDLCYE 725 (2114)
Q Consensus 649 rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~---l~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (2114)
.+ . ..+.|+++||||+| +.+..|+....... ........+ ...+.+.............+..
T Consensus 150 ~l----~--~~~~~~i~~SATlp--~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---- 214 (358)
T TIGR01587 150 VL----K--DNDVPILLMSATLP--KFLKEYAEKIGYVE---FNEPLDLKEERRFERHRFIKIESDKVGEISSLER---- 214 (358)
T ss_pred HH----H--HcCCCEEEEecCch--HHHHHHHhcCCCcc---cccCCCCccccccccccceeeccccccCHHHHHH----
Confidence 32 2 34789999999998 55677765332110 000000000 1111111111110111111111
Q ss_pred HHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCC
Q 000129 726 KVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMT 805 (2114)
Q Consensus 726 ~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~ 805 (2114)
.+.....++++||||+|++.|+.++..|++.+.. ..+..+||+|+
T Consensus 215 l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~-----------------------------------~~~~~~h~~~~ 259 (358)
T TIGR01587 215 LLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPE-----------------------------------EEIMLLHSRFT 259 (358)
T ss_pred HHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCC-----------------------------------CeEEEEECCCC
Confidence 1222234689999999999999999999865321 24778899999
Q ss_pred HHHHHHH----HHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCC--c
Q 000129 806 RGDRQLV----EDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDS--Y 879 (2114)
Q Consensus 806 ~~~R~~v----~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~--~ 879 (2114)
+.+|..+ ++.|++|..+|||||+++++|||+| +.+||+ +.. +..+|+||+||+||.|... .
T Consensus 260 ~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~----~~~--------~~~~~iqr~GR~gR~g~~~~~~ 326 (358)
T TIGR01587 260 EKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMIT----ELA--------PIDSLIQRLGRLHRYGRKNGEN 326 (358)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEE----cCC--------CHHHHHHHhccccCCCCCCCCC
Confidence 9999764 7899999999999999999999997 455565 321 4668999999999987542 3
Q ss_pred eEEEEEcCCCc
Q 000129 880 GEGIIITGHSE 890 (2114)
Q Consensus 880 G~~iil~~~~e 890 (2114)
|..+++...++
T Consensus 327 ~~~~v~~~~~~ 337 (358)
T TIGR01587 327 FEVYIITIAPE 337 (358)
T ss_pred CeEEEEeecCC
Confidence 58888876654
No 146
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.97 E-value=1.4e-29 Score=314.91 Aligned_cols=299 Identities=19% Similarity=0.253 Sum_probs=205.2
Q ss_pred HHHHHHHHHHcCCC-cEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC---CCc
Q 000129 1345 IQTQVFTVLYNTDD-NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG---LGM 1420 (2114)
Q Consensus 1345 iQ~q~~~~il~~~~-nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~---~g~ 1420 (2114)
+|+++|+++++++. +++++||||||||.||++|++. ... +++|++|+++|+.|++++|++.+... .+.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~------~~~--~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH------GEN--DTIALYPTNALIEDQTEAIKEFVDVFKPERDV 72 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH------cCC--CEEEEeChHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 59999999999875 6899999999999999999884 133 78999999999999999999777432 367
Q ss_pred EEEEEcCCcccchhh-----------------------ccCCcEEEEChhhHHHHHhhhcccc------cccceeEEEec
Q 000129 1421 RVVELTGETAMDLKL-----------------------LEKGQIIISTPEKWDALSRRWKQRK------YVQQVSLFIID 1471 (2114)
Q Consensus 1421 ~v~~l~G~~~~~~~~-----------------------l~~~~IIV~TPe~l~~l~r~~~~~~------~l~~v~liIiD 1471 (2114)
.+..++|+...+.+. ...++|+++||+.|..++|+|.... .++++++||+|
T Consensus 73 ~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~D 152 (357)
T TIGR03158 73 NLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFD 152 (357)
T ss_pred eEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEe
Confidence 788888874433111 1246899999999999988764322 36899999999
Q ss_pred ccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHh------cCCC----CceeecCC--------
Q 000129 1472 ELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWI------GATS----HGLFNFPP-------- 1533 (2114)
Q Consensus 1472 EaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl------~~~~----~~~~~f~~-------- 1533 (2114)
|+|.+..+....+...+..+..+... ....++|++|||++.. +.+++ |... ..-+.+..
T Consensus 153 E~H~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~i~lSAT~~~~--~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~ 229 (357)
T TIGR03158 153 EFHLYDAKQLVGMLFLLAYMQLIRFF-ECRRKFVFLSATPDPA--LILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADN 229 (357)
T ss_pred cccccCcccchhhhhhhHHHHHHHhh-hcCCcEEEEecCCCHH--HHHHHHhccccCceeeeecCcccccCCChhhhccc
Confidence 99999876655555555555544332 3357999999999753 33332 2111 00011110
Q ss_pred ---CCCcc--CcEEEEecccccchHHHHHhcCHHHHHHHHHHh--cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccc
Q 000129 1534 ---GVRPV--PLEIHIQGVDITNFEARMQAMTKPTFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKS 1606 (2114)
Q Consensus 1534 ---~~rpv--~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l--~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~ 1606 (2114)
.+||+ +++..+.. ...+.... .......+.+.+ .+++++||||+|++.|+.++..|...
T Consensus 230 ~~~~~~~~~~~i~~~~~~--~~~~~~~~---l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~--------- 295 (357)
T TIGR03158 230 KTQSFRPVLPPVELELIP--APDFKEEE---LSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQ--------- 295 (357)
T ss_pred cccccceeccceEEEEEe--CCchhHHH---HHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhh---------
Confidence 22332 23333222 11111111 111222232222 25678999999999999999777321
Q ss_pred cccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeee
Q 000129 1607 AFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQ 1686 (2114)
Q Consensus 1607 ~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~ 1686 (2114)
.....+..+||.+++.+|..+ ++.+|||||+++++|||+|.+.+|+
T Consensus 296 ------------------------~~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~~vi~---- 341 (357)
T TIGR03158 296 ------------------------GLGDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRDWLIF---- 341 (357)
T ss_pred ------------------------CCCceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCceEEE----
Confidence 012347789999999998654 4789999999999999999885443
Q ss_pred EecCCcCcCCCCCHhHHHHhHcccC
Q 000129 1687 YYDGQENAHTDYPVTDLLQMMGHAS 1711 (2114)
Q Consensus 1687 ~yd~~~~~~~~~s~~~~lQr~GRAG 1711 (2114)
.|.+..+|+||+||+|
T Consensus 342 ---------~p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 342 ---------SARDAAAFWQRLGRLG 357 (357)
T ss_pred ---------CCCCHHHHhhhcccCC
Confidence 2678999999999997
No 147
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.97 E-value=1.3e-29 Score=318.73 Aligned_cols=324 Identities=19% Similarity=0.212 Sum_probs=209.4
Q ss_pred EEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccc-------
Q 000129 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD------- 1432 (2114)
Q Consensus 1360 vli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~------- 1432 (2114)
++|+||||||||++|++++++.+.. ...+ +++|++|+++|+.|++++++..|+. +++.++|.....
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~-~~~~--~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~~~~~~~~~ 74 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKS-QKAD--RVIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSFKRIKEMGD 74 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhh-CCCC--eEEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHHHHHhccCC
Confidence 7999999999999999999988765 3344 9999999999999999999987764 344444432210
Q ss_pred --------------hhhccCCcEEEEChhhHHHHHhh-hccc-cccc--ceeEEEecccccccCCCCchHHHHHHHHHHH
Q 000129 1433 --------------LKLLEKGQIIISTPEKWDALSRR-WKQR-KYVQ--QVSLFIIDELHLIGGQGGPVLEVIVSRMRYI 1494 (2114)
Q Consensus 1433 --------------~~~l~~~~IIV~TPe~l~~l~r~-~~~~-~~l~--~v~liIiDEaH~l~~~~g~~le~i~srl~~i 1494 (2114)
...+..++|+|+||+++...+.+ .... ..+. ..+++|+||+|.+.+... +.+...++.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~---~~l~~~l~~l 151 (358)
T TIGR01587 75 SEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTL---ALILAVLEVL 151 (358)
T ss_pred chhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHH---HHHHHHHHHH
Confidence 00123458999999998765443 1111 1111 237999999999875432 2233333333
Q ss_pred HhhcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccC-cEEEEecccccchHHHHHhcCHHHHHHHHHHhcC
Q 000129 1495 ASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVP-LEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKN 1573 (2114)
Q Consensus 1495 ~~~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~-l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 1573 (2114)
. ..+.|++++|||++ +.+.+|+...............+.. ...+........ ..........+......
T Consensus 152 ~---~~~~~~i~~SATlp--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~l~~~~~~ 221 (358)
T TIGR01587 152 K---DNDVPILLMSATLP--KFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESD-----KVGEISSLERLLEFIKK 221 (358)
T ss_pred H---HcCCCEEEEecCch--HHHHHHHhcCCCcccccCCCCccccccccccceeeccc-----cccCHHHHHHHHHHhhC
Confidence 2 24689999999997 4456665432111000000000000 000000000000 00111222333344356
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHH---
Q 000129 1574 EKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEV--- 1650 (2114)
Q Consensus 1574 ~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~--- 1650 (2114)
++++||||+|+++|+.++..|.... ....+..+||+|++.+|..
T Consensus 222 ~~~~lVf~~t~~~~~~~~~~L~~~~---------------------------------~~~~~~~~h~~~~~~~r~~~~~ 268 (358)
T TIGR01587 222 GGKIAIIVNTVDRAQEFYQQLKENA---------------------------------PEEEIMLLHSRFTEKDRAKKEA 268 (358)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhhc---------------------------------CCCeEEEEECCCCHHHHHHHHH
Confidence 7899999999999999997774321 1125899999999999976
Q ss_pred -HHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCC--CceEEEEEeec
Q 000129 1651 -VSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLD--NSGKCVILCHA 1727 (2114)
Q Consensus 1651 -v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~--~~G~~iil~~~ 1727 (2114)
+++.|++|..+|||||+++++|+|+|...+|. + +.+..+|+||+||+||.|.. ..|.++++...
T Consensus 269 ~~~~~f~~~~~~ilvaT~~~~~GiDi~~~~vi~-----------~--~~~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~ 335 (358)
T TIGR01587 269 ELLEEMKKNEKFVIVATQVIEASLDISADVMIT-----------E--LAPIDSLIQRLGRLHRYGRKNGENFEVYIITIA 335 (358)
T ss_pred HHHHHhcCCCCeEEEECcchhceeccCCCEEEE-----------c--CCCHHHHHHHhccccCCCCCCCCCCeEEEEeec
Confidence 48899999999999999999999998554443 2 45688999999999998633 33588888876
Q ss_pred CcHHHHHHHHHhccCCCCccccCCCccchHHHHHHHHHHHHHHHHH
Q 000129 1728 PRKEYYKKFLRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEA 1773 (2114)
Q Consensus 1728 ~~~~~~~~~lRl~~nP~~y~l~~~s~~~l~~~lselve~~l~~L~~ 1773 (2114)
++... .-|-.++++++++.|++
T Consensus 336 ~~~~~------------------------~~~~~~~~~~t~~~~~~ 357 (358)
T TIGR01587 336 PEGKL------------------------FPYPYELVERTIQKLEE 357 (358)
T ss_pred CCCCe------------------------ecCCHHHHHHHHHHHhc
Confidence 54221 12334788888888875
No 148
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.97 E-value=9.6e-29 Score=294.41 Aligned_cols=345 Identities=20% Similarity=0.225 Sum_probs=229.4
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000129 1337 QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2114)
Q Consensus 1337 ~gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~ 1416 (2114)
++.-+++.+|..+...++.. |+||+.|||-|||++|.+.+...+.. .++ ++|+++||+-|+.|.+..+++.++
T Consensus 11 p~~ie~R~YQ~~i~a~al~~--NtLvvlPTGLGKT~IA~~V~~~~l~~--~~~--kvlfLAPTKPLV~Qh~~~~~~v~~- 83 (542)
T COG1111 11 PNTIEPRLYQLNIAAKALFK--NTLVVLPTGLGKTFIAAMVIANRLRW--FGG--KVLFLAPTKPLVLQHAEFCRKVTG- 83 (542)
T ss_pred cccccHHHHHHHHHHHHhhc--CeEEEecCCccHHHHHHHHHHHHHHh--cCC--eEEEecCCchHHHHHHHHHHHHhC-
Confidence 34567889999999888753 89999999999999999999988887 233 899999999999999999985544
Q ss_pred CCCcEEEEEcCCcccc--hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHH
Q 000129 1417 GLGMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYI 1494 (2114)
Q Consensus 1417 ~~g~~v~~l~G~~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i 1494 (2114)
...-.++.++|..+.+ ...+.+++|+|+||+.+.+=+.. ++..+.++.++|+||||+--+. ..|-.+....-
T Consensus 84 ip~~~i~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~--Grid~~dv~~lifDEAHRAvGn--yAYv~Va~~y~-- 157 (542)
T COG1111 84 IPEDEIAALTGEVRPEEREELWAKKKVFVATPQVVENDLKA--GRIDLDDVSLLIFDEAHRAVGN--YAYVFVAKEYL-- 157 (542)
T ss_pred CChhheeeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhc--CccChHHceEEEechhhhccCc--chHHHHHHHHH--
Confidence 3355789999999887 44678889999999998765555 5678999999999999986433 33433433222
Q ss_pred HhhcCCCceEEEEcccCCChh----HHHHHhcCCCCce-eecCCCCCccCcEEEE--ecccccch----HHHHHhcCHHH
Q 000129 1495 ASQVENKIRIVALSTSLANAK----DLGEWIGATSHGL-FNFPPGVRPVPLEIHI--QGVDITNF----EARMQAMTKPT 1563 (2114)
Q Consensus 1495 ~~~~~~~~riV~lSATl~n~~----dla~wl~~~~~~~-~~f~~~~rpv~l~~~~--~~~~~~~~----~~~~~~~~~~~ 1563 (2114)
....+++++|||||+++.. ++.+-||.....+ ..-++.++|.--.+.+ ...+.+.- ...+..+.++.
T Consensus 158 --~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~ 235 (542)
T COG1111 158 --RSAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPR 235 (542)
T ss_pred --HhccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHH
Confidence 1256889999999998742 4555555543111 1112333332111111 11110000 00000000000
Q ss_pred --------------------------------------------------------------------------------
Q 000129 1564 -------------------------------------------------------------------------------- 1563 (2114)
Q Consensus 1564 -------------------------------------------------------------------------------- 1563 (2114)
T Consensus 236 Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~ 315 (542)
T COG1111 236 LKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATK 315 (542)
T ss_pred HHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcc
Confidence
Q ss_pred --------------------------------------HHHHHHHh--cCCCCEEEEeCChHHHHHHHHHHHHhhccCCc
Q 000129 1564 --------------------------------------FTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGD 1603 (2114)
Q Consensus 1564 --------------------------------------~~~i~~~l--~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~ 1603 (2114)
...+.+.+ ..+.++|||++-|..|+.++..|........
T Consensus 316 ~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~- 394 (542)
T COG1111 316 GGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKAR- 394 (542)
T ss_pred cchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcce-
Confidence 00000011 1123466666666666665555533211100
Q ss_pred ccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEE
Q 000129 1604 QKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVM 1683 (2114)
Q Consensus 1604 ~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~ 1683 (2114)
..+++.+-.-+..||++.+++.+++.|++|..+|||||++++.|+|+|.+.+||
T Consensus 395 -------------------------~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVi- 448 (542)
T COG1111 395 -------------------------VRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVI- 448 (542)
T ss_pred -------------------------eEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEE-
Confidence 001111122234789999999999999999999999999999999999999999
Q ss_pred eeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecC--cHHHHHH
Q 000129 1684 GTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP--RKEYYKK 1735 (2114)
Q Consensus 1684 gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~--~~~~~~~ 1735 (2114)
.|+.--|..-++||.||+|| +..|.++++.... +..||..
T Consensus 449 ---------fYEpvpSeIR~IQR~GRTGR---~r~Grv~vLvt~gtrdeayy~~ 490 (542)
T COG1111 449 ---------FYEPVPSEIRSIQRKGRTGR---KRKGRVVVLVTEGTRDEAYYYS 490 (542)
T ss_pred ---------EecCCcHHHHHHHhhCcccc---CCCCeEEEEEecCchHHHHHHH
Confidence 33333467889999999999 6899999999887 4445543
No 149
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.97 E-value=1.9e-28 Score=291.97 Aligned_cols=342 Identities=23% Similarity=0.330 Sum_probs=233.0
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
+.-+++.+|...+..++.+ |.|++.|||-|||.+|++.|...+.... + |+|+++|||-|+.|.++.+.
T Consensus 12 ~~ie~R~YQ~~i~a~al~~--NtLvvlPTGLGKT~IA~~V~~~~l~~~~---------~-kvlfLAPTKPLV~Qh~~~~~ 79 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK--NTLVVLPTGLGKTFIAAMVIANRLRWFG---------G-KVLFLAPTKPLVLQHAEFCR 79 (542)
T ss_pred ccccHHHHHHHHHHHHhhc--CeEEEecCCccHHHHHHHHHHHHHHhcC---------C-eEEEecCCchHHHHHHHHHH
Confidence 4557889999999988876 8999999999999999999998887652 3 89999999999999999999
Q ss_pred HhhccCCcEEEEEeCCCccChh--hhccceEEEcCHhHH--HHHHhccCCCcccccccEEEEecccccccCCchhHHHHH
Q 000129 572 NRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKW--DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIV 647 (2114)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPek~--d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv 647 (2114)
+.++-..-.+..+||..+.+.+ .+...+|+|+||... |++.. +..+.++.++||||||+-..+.. +-.+.
T Consensus 80 ~v~~ip~~~i~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~G----rid~~dv~~lifDEAHRAvGnyA--Yv~Va 153 (542)
T COG1111 80 KVTGIPEDEIAALTGEVRPEEREELWAKKKVFVATPQVVENDLKAG----RIDLDDVSLLIFDEAHRAVGNYA--YVFVA 153 (542)
T ss_pred HHhCCChhheeeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcC----ccChHHceEEEechhhhccCcch--HHHHH
Confidence 9876545578999999887754 367899999999986 33322 35678899999999998653322 22222
Q ss_pred HHHHHHHhhccccccEEEEccccCC-hHHHHHHHhccccCceEee---cCCccccc--ceeEEEe---------------
Q 000129 648 ARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYF---DNSYRPVP--LSQQYIG--------------- 706 (2114)
Q Consensus 648 ~rl~~~~~~~~~~~riv~lSATlpn-~~dva~~l~~~~~~~~~~f---~~~~rpv~--l~~~~~~--------------- 706 (2114)
...+ ....+++++|||||..+ .+.+.+-...-.-..+.+- +.+.+|.- ...+.+.
T Consensus 154 ~~y~----~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~ 229 (542)
T COG1111 154 KEYL----RSAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLR 229 (542)
T ss_pred HHHH----HhccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHH
Confidence 2222 23568899999999553 2233332221100111110 01111100 0000000
Q ss_pred ------------------ec---cC--------------c-hhHHHHHh-------------------------------
Q 000129 707 ------------------IQ---VK--------------K-PLQRFQLM------------------------------- 719 (2114)
Q Consensus 707 ------------------~~---~~--------------~-~~~~~~~~------------------------------- 719 (2114)
.. .+ . ....+..|
T Consensus 230 ~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l 309 (542)
T COG1111 230 DALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKL 309 (542)
T ss_pred HHHHHHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 00 00 0 00000000
Q ss_pred ----------------h------------------------HHHHHHHHHHh---CCCeEEEEecChHHHHHHHHHHHHH
Q 000129 720 ----------------N------------------------DLCYEKVVAVA---GKHQVLIFVHSRKETAKTARAIRDT 756 (2114)
Q Consensus 720 ----------------~------------------------~~~~~~i~~~~---~~~~vLVFv~sr~~~~~~a~~L~~~ 756 (2114)
. +.+.+.+.+.. ++.++|||++-|..++.++..|...
T Consensus 310 ~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~ 389 (542)
T COG1111 310 EEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKI 389 (542)
T ss_pred HHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhc
Confidence 0 00001112222 2458999999999999999999887
Q ss_pred hhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCC
Q 000129 757 ALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNL 836 (2114)
Q Consensus 757 ~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdl 836 (2114)
+.... ..|+. .+-.-+..||++.++..+++.|++|..+||||||+.+.|+|+
T Consensus 390 ~~~~~--~rFiG--------------------------Qa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDI 441 (542)
T COG1111 390 GIKAR--VRFIG--------------------------QASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDI 441 (542)
T ss_pred CCcce--eEEee--------------------------ccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCC
Confidence 65543 12321 111223589999999999999999999999999999999999
Q ss_pred CceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCC--cHHHHHH
Q 000129 837 PAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS--ELRYYLS 896 (2114)
Q Consensus 837 P~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~--e~~~~~~ 896 (2114)
|++++||- |+|-- |..-++||.||+||. +.|.++++.+.+ +..||.+
T Consensus 442 p~vDlVif----YEpvp------SeIR~IQR~GRTGR~---r~Grv~vLvt~gtrdeayy~~ 490 (542)
T COG1111 442 PEVDLVIF----YEPVP------SEIRSIQRKGRTGRK---RKGRVVVLVTEGTRDEAYYYS 490 (542)
T ss_pred CcccEEEE----ecCCc------HHHHHHHhhCccccC---CCCeEEEEEecCchHHHHHHH
Confidence 99999997 88765 888999999999994 789999998876 4445543
No 150
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.97 E-value=1.7e-28 Score=320.63 Aligned_cols=410 Identities=16% Similarity=0.160 Sum_probs=297.4
Q ss_pred HHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCC
Q 000129 1349 VFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGE 1428 (2114)
Q Consensus 1349 ~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~ 1428 (2114)
.|-.+++.+..++|+||||||||+...+.++..... ..+ +++++.|+|--|..+++++.+.++...|-.|+...-
T Consensus 57 ~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~--~~g--~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iR- 131 (845)
T COG1643 57 EILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLG--IAG--KIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIR- 131 (845)
T ss_pred HHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcc--cCC--eEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEE-
Confidence 344455667889999999999999988888876542 244 899999999999999999999988776766665432
Q ss_pred cccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEc
Q 000129 1429 TAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALS 1508 (2114)
Q Consensus 1429 ~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lS 1508 (2114)
.+...-.++.|-++|.|.|...+. ....++.+++||+||+| +|.-....++.-++.+....+.+.++|.||
T Consensus 132 --fe~~~s~~Trik~mTdGiLlrei~---~D~~Ls~ys~vIiDEaH----ERSl~tDilLgllk~~~~~rr~DLKiIimS 202 (845)
T COG1643 132 --FESKVSPRTRIKVMTDGILLREIQ---NDPLLSGYSVVIIDEAH----ERSLNTDILLGLLKDLLARRRDDLKLIIMS 202 (845)
T ss_pred --eeccCCCCceeEEeccHHHHHHHh---hCcccccCCEEEEcchh----hhhHHHHHHHHHHHHHHhhcCCCceEEEEe
Confidence 122223467899999999665554 47789999999999999 344555668888888877777789999999
Q ss_pred ccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHh-cCCCCEEEEeCChHHH
Q 000129 1509 TSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHA-KNEKPALVFVPSRKYV 1587 (2114)
Q Consensus 1509 ATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~~~LVFv~sr~~a 1587 (2114)
||+ |+++|+++|+..+ ++. ...|..|+++++......++. . .......+..++ ...+.+|||.|..++.
T Consensus 203 ATl-d~~rfs~~f~~ap--vi~--i~GR~fPVei~Y~~~~~~d~~-l----~~ai~~~v~~~~~~~~GdILvFLpG~~EI 272 (845)
T COG1643 203 ATL-DAERFSAYFGNAP--VIE--IEGRTYPVEIRYLPEAEADYI-L----LDAIVAAVDIHLREGSGSILVFLPGQREI 272 (845)
T ss_pred ccc-CHHHHHHHcCCCC--EEE--ecCCccceEEEecCCCCcchh-H----HHHHHHHHHHhccCCCCCEEEECCcHHHH
Confidence 999 8999999999643 343 345777777777433332221 1 111122222222 3467899999999999
Q ss_pred HHHHHHHHH-hhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEec
Q 000129 1588 RLTAVDLMT-YSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMS 1666 (2114)
Q Consensus 1588 ~~la~~L~~-~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT 1666 (2114)
+.++..|.. ... -..-|..+||.|+.+++..+++.-..|+.+|++||
T Consensus 273 ~~~~~~L~~~~l~--------------------------------~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlAT 320 (845)
T COG1643 273 ERTAEWLEKAELG--------------------------------DDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLAT 320 (845)
T ss_pred HHHHHHHHhcccc--------------------------------CCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEc
Confidence 999987754 100 12348999999999999999999999999999999
Q ss_pred CccccccCCCCcEEEEE-e---eeEecCCcCc----CCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHHHHHH
Q 000129 1667 SSMCWGVPLTAHLVVVM-G---TQYYDGQENA----HTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLR 1738 (2114)
Q Consensus 1667 ~~la~Gvdip~~~vVI~-g---t~~yd~~~~~----~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~~~lR 1738 (2114)
++++.+|++|++++||- | ...|+.+.+. ..++|.++..||.||||| -.+|+||.++++.+.. .+.
T Consensus 321 NIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR---~~pGicyRLyse~~~~---~~~- 393 (845)
T COG1643 321 NIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGR---TGPGICYRLYSEEDFL---AFP- 393 (845)
T ss_pred cccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhcccccc---CCCceEEEecCHHHHH---hcc-
Confidence 99999999999999993 2 3577777554 357899999999999999 4799999999874332 222
Q ss_pred hccCCCC--------------cccc-CCCccc-hHHHHHHHHHHHHHHHHHCCCceecCCCccccCcccchhhhcccCHh
Q 000129 1739 LTQNPNY--------------YNLQ-GVSHRH-LSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYT 1802 (2114)
Q Consensus 1739 l~~nP~~--------------y~l~-~~s~~~-l~~~lselve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~i~~~ 1802 (2114)
....|.. +|+. +..... ++..-...+..++..|...|++..++ ..|++|+.||.++++|+
T Consensus 394 ~~t~PEIlrtdLs~~vL~l~~~G~~~d~~~f~fld~P~~~~i~~A~~~L~~LGAld~~g----~LT~lG~~ms~lpldpr 469 (845)
T COG1643 394 EFTLPEILRTDLSGLVLQLKSLGIGQDIAPFPFLDPPPEAAIQAALTLLQELGALDDSG----KLTPLGKQMSLLPLDPR 469 (845)
T ss_pred cCCChhhhhcchHHHHHHHHhcCCCCCcccCccCCCCChHHHHHHHHHHHHcCCcCCCC----CCCHHHHHHHhCCCChH
Confidence 0111111 1221 111111 12223567889999999999995443 38999999999999999
Q ss_pred HHHHHHhhcCCCCChhhHHHHHhc
Q 000129 1803 TIERFSSSLTPKTRMKGLLEVLAS 1826 (2114)
Q Consensus 1803 T~~~f~~sl~~~~~~~~iL~ils~ 1826 (2114)
.++++..+-... ...+++.|.|.
T Consensus 470 LA~mLl~a~~~g-~~~e~~~Ias~ 492 (845)
T COG1643 470 LARMLLTAPEGG-CLGEAATIASM 492 (845)
T ss_pred HHHHHHhccccC-cHHHHHHHHHh
Confidence 999999865533 33445444443
No 151
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=1.7e-27 Score=285.96 Aligned_cols=441 Identities=16% Similarity=0.159 Sum_probs=304.0
Q ss_pred HHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEE
Q 000129 1344 PIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVV 1423 (2114)
Q Consensus 1344 ~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~ 1423 (2114)
..+.+.+..+ ..++.|+|.+.||||||+.....++.. ....+| .+-|..|+|..|..+++++...++..+|..|+
T Consensus 359 ~~R~~ll~~i-r~n~vvvivgETGSGKTTQl~QyL~ed--GY~~~G--mIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VG 433 (1042)
T KOG0924|consen 359 ACRDQLLSVI-RENQVVVIVGETGSGKTTQLAQYLYED--GYADNG--MIGCTQPRRVAAISVAKRVAEEMGVTLGDTVG 433 (1042)
T ss_pred HHHHHHHHHH-hhCcEEEEEecCCCCchhhhHHHHHhc--ccccCC--eeeecCchHHHHHHHHHHHHHHhCCccccccc
Confidence 3455555544 457779999999999998765544432 212344 78899999999999999999988777777776
Q ss_pred EEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCce
Q 000129 1424 ELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIR 1503 (2114)
Q Consensus 1424 ~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~r 1503 (2114)
....-.+. .-..+.|-++|.+.| +|.......+.++++||+|||| ++......++..++..... ..+++
T Consensus 434 YsIRFEdv---T~~~T~IkymTDGiL---LrEsL~d~~L~kYSviImDEAH----ERslNtDilfGllk~~lar-RrdlK 502 (1042)
T KOG0924|consen 434 YSIRFEDV---TSEDTKIKYMTDGIL---LRESLKDRDLDKYSVIIMDEAH----ERSLNTDILFGLLKKVLAR-RRDLK 502 (1042)
T ss_pred eEEEeeec---CCCceeEEEeccchH---HHHHhhhhhhhheeEEEechhh----hcccchHHHHHHHHHHHHh-hccce
Confidence 54321111 113557999999985 4444446678999999999999 3444455566666665544 56999
Q ss_pred EEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHh-cCCCCEEEEeC
Q 000129 1504 IVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHA-KNEKPALVFVP 1582 (2114)
Q Consensus 1504 iV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~~~LVFv~ 1582 (2114)
+|.+|||+ |++.|+.|+|..+ .|+. ..|..|+++.+...+..+|.... .+ +.+.-++ ...+.+|||.+
T Consensus 503 liVtSATm-~a~kf~nfFgn~p--~f~I--pGRTyPV~~~~~k~p~eDYVeaa---vk---q~v~Ihl~~~~GdilIfmt 571 (1042)
T KOG0924|consen 503 LIVTSATM-DAQKFSNFFGNCP--QFTI--PGRTYPVEIMYTKTPVEDYVEAA---VK---QAVQIHLSGPPGDILIFMT 571 (1042)
T ss_pred EEEeeccc-cHHHHHHHhCCCc--eeee--cCCccceEEEeccCchHHHHHHH---Hh---hheEeeccCCCCCEEEecC
Confidence 99999999 9999999999554 3444 45677777776655555443321 11 1111122 24478999999
Q ss_pred ChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceE
Q 000129 1583 SRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKV 1662 (2114)
Q Consensus 1583 sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~V 1662 (2114)
.+..++.++..+...+..-... ......|..+++.|+..-+..+++.-..|..++
T Consensus 572 GqediE~t~~~i~~~l~ql~~~-------------------------~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~ 626 (1042)
T KOG0924|consen 572 GQEDIECTCDIIKEKLEQLDSA-------------------------PTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKC 626 (1042)
T ss_pred CCcchhHHHHHHHHHHHhhhcC-------------------------CCCceEEEeehhhCchhhhhhhcccCCCCceeE
Confidence 9988877776664432211000 001234889999999999999999999999999
Q ss_pred EEecCccccccCCCCcEEEE----EeeeEecCCcCc----CCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHH
Q 000129 1663 CVMSSSMCWGVPLTAHLVVV----MGTQYYDGQENA----HTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYK 1734 (2114)
Q Consensus 1663 LVaT~~la~Gvdip~~~vVI----~gt~~yd~~~~~----~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~ 1734 (2114)
+|||++++.++.+|++.+|| ...+.|+.+.+. -+|+|.+..-||.||||| ..+|.||.+++... |..
T Consensus 627 IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGR---t~pG~cYRlYTe~a--y~~ 701 (1042)
T KOG0924|consen 627 IVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGR---TGPGTCYRLYTEDA--YKN 701 (1042)
T ss_pred EEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCC---CCCcceeeehhhhH--HHh
Confidence 99999999999999999999 334678877654 358999999999999999 57999999997632 222
Q ss_pred HHH-----H-hccCCCCc--cccCCCccchHH------HHHHHHHHHHHHHHHCCCceecCCCccccCcccchhhhcccC
Q 000129 1735 KFL-----R-LTQNPNYY--NLQGVSHRHLSD------HLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYIS 1800 (2114)
Q Consensus 1735 ~~l-----R-l~~nP~~y--~l~~~s~~~l~~------~lselve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~i~ 1800 (2114)
.++ . ...|+.-. -|+.+...+++. ...+.+.+++-.|...|+|.- .-..|++|+.|+.|+++
T Consensus 702 eml~stvPEIqRTNl~nvVLlLkslgV~dll~FdFmD~Pped~~~~sly~Lw~LGAl~~----~g~LT~lG~~MvefpLD 777 (1042)
T KOG0924|consen 702 EMLPSTVPEIQRTNLSNVVLLLKSLGVDDLLKFDFMDPPPEDNLLNSLYQLWTLGALDN----TGQLTPLGRKMVEFPLD 777 (1042)
T ss_pred hcccCCCchhhhcchhhHHHHHHhcChhhhhCCCcCCCCHHHHHHHHHHHHHHhhcccc----CCccchhhHHhhhCCCC
Confidence 222 0 11122211 111122222222 267888999999999999943 44689999999999999
Q ss_pred HhHHHHHHhhcCCCCChhhHHHHHhcCccccCCCCCcchHHHHHHHH
Q 000129 1801 YTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLI 1847 (2114)
Q Consensus 1801 ~~T~~~f~~sl~~~~~~~~iL~ils~a~Ef~~i~vR~~E~~~l~~L~ 1847 (2114)
|...++++.+..-.+ ..+||.|+|.-+- ..+-.|+.|...-..++
T Consensus 778 P~lsKmll~a~~~Gc-~dEilsIvSmLSv-p~VF~rpker~eead~a 822 (1042)
T KOG0924|consen 778 PPLSKMLLMAARMGC-SDEILSIVSMLSV-PAVFYRPKEREEEADAA 822 (1042)
T ss_pred chHHHHHHHHhccCc-HHHHHHHHHHhcc-cceeeccccchhhhhhH
Confidence 999999987655444 3666666654332 34556666655544443
No 152
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.96 E-value=6e-28 Score=313.55 Aligned_cols=359 Identities=16% Similarity=0.178 Sum_probs=222.8
Q ss_pred cCCCCCcccccCcceEEecCCCCCCCCCCCCCccccCCCChhhHhhc--CC--CCCCCHHHHHHHHHHHcCCCcEEEEcc
Q 000129 444 DLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAF--KG--MTQLNRVQSRVYKSALSSADNILLCAP 519 (2114)
Q Consensus 444 ~lp~~s~~~~~~~~eei~vp~~~~~~~~~~~~l~~i~~lp~~~~~~f--~g--~~~l~~iQ~~~i~~~l~~~~nvlv~AP 519 (2114)
.+|-|-........++..+.+........++. ++-.++..|+.... .+ ...|+++|.++++.++.++ +.+++||
T Consensus 60 ~~prG~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~~~r~~Q~~av~~~l~~~-~~il~ap 137 (501)
T PHA02558 60 LLPYGLVGQLKKFAKNRGYSIWVDPRIEENED-ISREDFDEWVSSLEIYSGNKKIEPHWYQYDAVYEGLKNN-RRLLNLP 137 (501)
T ss_pred CcccchHHHHHHHHHhcCCeEecCcccccCCC-CCHHHHHhHhhhcccccCCCcCCCCHHHHHHHHHHHhcC-ceEEEeC
Confidence 68888766655555554443321111111111 12223344555433 12 3489999999999988764 4899999
Q ss_pred CCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhhhccce
Q 000129 520 TGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQ 599 (2114)
Q Consensus 520 TGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~ 599 (2114)
||+|||.++...+...+... ..++||++||++|+.|+.++|.+++......+..+.|+.... ...+
T Consensus 138 TGsGKT~i~~~l~~~~~~~~----------~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~----~~~~ 203 (501)
T PHA02558 138 TSAGKSLIQYLLSRYYLENY----------EGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAKD----TDAP 203 (501)
T ss_pred CCCCHHHHHHHHHHHHHhcC----------CCeEEEEECcHHHHHHHHHHHHHhccccccceeEEecCcccC----CCCC
Confidence 99999998765332222221 238999999999999999999986543334454555544322 3579
Q ss_pred EEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEccccCChHH----
Q 000129 600 IIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYED---- 675 (2114)
Q Consensus 600 IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~d---- 675 (2114)
|+|+||+++- +.. ..+++++++||+||||++.+ ..++.++..+ ....+++|||||+++...
T Consensus 204 I~VaT~qsl~---~~~--~~~~~~~~~iIvDEaH~~~~---~~~~~il~~~-------~~~~~~lGLTATp~~~~~~~~~ 268 (501)
T PHA02558 204 IVVSTWQSAV---KQP--KEWFDQFGMVIVDECHLFTG---KSLTSIITKL-------DNCKFKFGLTGSLRDGKANILQ 268 (501)
T ss_pred EEEeeHHHHh---hch--hhhccccCEEEEEchhcccc---hhHHHHHHhh-------hccceEEEEeccCCCccccHHH
Confidence 9999999752 222 13567899999999999863 3455554432 234578999999764221
Q ss_pred HHHHHhccccCceEeecC-----CcccccceeEEE--eeccC--------chhHHHH------HhhHHHHHHHHHHh-CC
Q 000129 676 VALFLRVNLEKGLFYFDN-----SYRPVPLSQQYI--GIQVK--------KPLQRFQ------LMNDLCYEKVVAVA-GK 733 (2114)
Q Consensus 676 va~~l~~~~~~~~~~f~~-----~~rpv~l~~~~~--~~~~~--------~~~~~~~------~~~~~~~~~i~~~~-~~ 733 (2114)
+..+++.. .+.... .-..+++....+ ..+.. .....+. .-+..+...+.... .+
T Consensus 269 ~~~~fG~i----~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~ 344 (501)
T PHA02558 269 YVGLFGDI----FKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKG 344 (501)
T ss_pred HHHhhCCc----eEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcC
Confidence 11122100 000000 000001111000 00000 0000000 01122222222222 35
Q ss_pred CeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHH
Q 000129 734 HQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVE 813 (2114)
Q Consensus 734 ~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~ 813 (2114)
++++|||++++.++.++..|...+. .+.++||+|+.++|..++
T Consensus 345 ~~~lV~~~~~~h~~~L~~~L~~~g~-------------------------------------~v~~i~G~~~~~eR~~i~ 387 (501)
T PHA02558 345 ENTFVMFKYVEHGKPLYEMLKKVYD-------------------------------------KVYYVSGEVDTEDRNEMK 387 (501)
T ss_pred CCEEEEEEEHHHHHHHHHHHHHcCC-------------------------------------CEEEEeCCCCHHHHHHHH
Confidence 6889999999999999988876432 256779999999999999
Q ss_pred HHHhCCCceEEEec-hHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEE
Q 000129 814 DLFGDGHVQVLVST-ATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885 (2114)
Q Consensus 814 ~~F~~g~i~VLVaT-~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil 885 (2114)
+.|++|...||||| +++++|+|+|++++||. +.|.+ |...|+||+||+||++.+ +..++++
T Consensus 388 ~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl----~~p~~------s~~~~~QriGR~~R~~~~-K~~~~i~ 449 (501)
T PHA02558 388 KIAEGGKGIIIVASYGVFSTGISIKNLHHVIF----AHPSK------SKIIVLQSIGRVLRKHGS-KSIATVW 449 (501)
T ss_pred HHHhCCCCeEEEEEcceeccccccccccEEEE----ecCCc------chhhhhhhhhccccCCCC-CceEEEE
Confidence 99999999999998 89999999999999997 66665 677899999999998633 3445544
No 153
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.96 E-value=2.3e-27 Score=315.62 Aligned_cols=389 Identities=18% Similarity=0.186 Sum_probs=250.3
Q ss_pred CCCCHHHHHHHHHHHcC--CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1340 KHFNPIQTQVFTVLYNT--DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il~~--~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
..+++.|.++++.+.++ ..++++.||||||||.+|+.++...+.. ++ +++|++|+++|+.|+++++++.|
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---g~--~vLvLvPt~~L~~Q~~~~l~~~f--- 214 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---GK--QALVLVPEIALTPQMLARFRARF--- 214 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc---CC--eEEEEeCcHHHHHHHHHHHHHHh---
Confidence 36999999999999874 5679999999999999998888777654 44 89999999999999999999766
Q ss_pred CCcEEEEEcCCcccchh-----hc--cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC--CCCchHHH-H
Q 000129 1418 LGMRVVELTGETAMDLK-----LL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG--QGGPVLEV-I 1487 (2114)
Q Consensus 1418 ~g~~v~~l~G~~~~~~~-----~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~--~~g~~le~-i 1487 (2114)
|.++..++|+.+...+ .+ ...+|+|+|++.+. ..+.++++|||||+|..+. ..++.|.. -
T Consensus 215 -g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~---------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~ 284 (679)
T PRK05580 215 -GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF---------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARD 284 (679)
T ss_pred -CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc---------ccccCCCEEEEECCCccccccCcCCCCcHHH
Confidence 4578899998765421 12 24599999997632 3478899999999997653 23444321 1
Q ss_pred HHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCC--CccCcEEEEecccccchHHHHHhcCHHHHH
Q 000129 1488 VSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGV--RPVPLEIHIQGVDITNFEARMQAMTKPTFT 1565 (2114)
Q Consensus 1488 ~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~--rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~ 1565 (2114)
+..++. ...+.++|++|||++ .+.+..-. ......+...... ++.| .+.+..............+...++.
T Consensus 285 va~~ra----~~~~~~~il~SATps-~~s~~~~~-~g~~~~~~l~~r~~~~~~p-~v~~id~~~~~~~~~~~~ls~~l~~ 357 (679)
T PRK05580 285 LAVVRA----KLENIPVVLGSATPS-LESLANAQ-QGRYRLLRLTKRAGGARLP-EVEIIDMRELLRGENGSFLSPPLLE 357 (679)
T ss_pred HHHHHh----hccCCCEEEEcCCCC-HHHHHHHh-ccceeEEEeccccccCCCC-eEEEEechhhhhhcccCCCCHHHHH
Confidence 111221 145789999999964 33332211 1112222222221 1122 2333222110000001134567788
Q ss_pred HHHHHhcCCCCEEEEeCChHHH-----HHHHHHH-------------------HHhhccCCcccccccCCCcccchh---
Q 000129 1566 AIVQHAKNEKPALVFVPSRKYV-----RLTAVDL-------------------MTYSSMDGDQKSAFLLWPAEEVEP--- 1618 (2114)
Q Consensus 1566 ~i~~~l~~~~~~LVFv~sr~~a-----~~la~~L-------------------~~~~~~~~~~~~~~l~~~~~~l~~--- 1618 (2114)
.+.+.+..++++|||+|+|..+ +.+...+ |++|.........|..|....+..
T Consensus 358 ~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~ 437 (679)
T PRK05580 358 AIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGP 437 (679)
T ss_pred HHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeec
Confidence 8888888899999999997643 2222111 223332222112244444433332
Q ss_pred hHhhhhHHHHHHHhccceEeecCCCC--HHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEE-EeeeEecCC-cCc
Q 000129 1619 FIDNIQEEMLKATLRHGVGYLHEGLN--KTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVV-MGTQYYDGQ-ENA 1694 (2114)
Q Consensus 1619 ~~~~i~d~~L~~~l~~gV~~~H~~ls--~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI-~gt~~yd~~-~~~ 1694 (2114)
-.+++.+..-..+.+..|..+|+++. ..+++.+++.|++|+++|||+|+++++|+|+|++.+|+ .+....-.. .-+
T Consensus 438 G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfr 517 (679)
T PRK05580 438 GTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFR 517 (679)
T ss_pred cHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccc
Confidence 24444444444444678999999986 46789999999999999999999999999999998775 211100000 000
Q ss_pred CCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHHHH------------H---HhccCCCCccccCCCccc
Q 000129 1695 HTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKF------------L---RLTQNPNYYNLQGVSHRH 1755 (2114)
Q Consensus 1695 ~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~~~------------l---Rl~~nP~~y~l~~~s~~~ 1755 (2114)
........|+|++|||||. +..|.+++.+..++...++.+ + +....|+|..+..+...+
T Consensus 518 a~Er~~~~l~q~~GRagR~--~~~g~viiqT~~p~~~~~~~~~~~d~~~f~~~El~~R~~~~~PPf~~l~~i~~~~ 591 (679)
T PRK05580 518 ASERTFQLLTQVAGRAGRA--EKPGEVLIQTYHPEHPVIQALLAQDYDAFAEQELEERRAAGYPPFGRLALLRASA 591 (679)
T ss_pred hHHHHHHHHHHHHhhccCC--CCCCEEEEEeCCCCCHHHHHHHhCCHHHHHHHHHHHHHhcCCCCHHHhhEeEEec
Confidence 0111257799999999997 789999999987764333222 2 677899999776654433
No 154
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.95 E-value=3.8e-27 Score=306.11 Aligned_cols=314 Identities=18% Similarity=0.194 Sum_probs=204.7
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000129 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g 1419 (2114)
..|+++|.++++.++.++ +.+++||||||||+++... .+.+.. ...+ ++||++||++|+.|+.++++ .|.....
T Consensus 113 ~~~r~~Q~~av~~~l~~~-~~il~apTGsGKT~i~~~l-~~~~~~-~~~~--~vLilvpt~eL~~Q~~~~l~-~~~~~~~ 186 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNN-RRLLNLPTSAGKSLIQYLL-SRYYLE-NYEG--KVLIIVPTTSLVTQMIDDFV-DYRLFPR 186 (501)
T ss_pred CCCCHHHHHHHHHHHhcC-ceEEEeCCCCCHHHHHHHH-HHHHHh-cCCC--eEEEEECcHHHHHHHHHHHH-Hhccccc
Confidence 479999999999998754 5899999999999987543 333233 2233 89999999999999999998 4554323
Q ss_pred cEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcC
Q 000129 1420 MRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVE 1499 (2114)
Q Consensus 1420 ~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~ 1499 (2114)
..+..+.|+.... ..++|+|+||+++.... ...++++++||+||||++.+. .++.++.. ++
T Consensus 187 ~~~~~i~~g~~~~----~~~~I~VaT~qsl~~~~-----~~~~~~~~~iIvDEaH~~~~~---~~~~il~~-------~~ 247 (501)
T PHA02558 187 EAMHKIYSGTAKD----TDAPIVVSTWQSAVKQP-----KEWFDQFGMVIVDECHLFTGK---SLTSIITK-------LD 247 (501)
T ss_pred cceeEEecCcccC----CCCCEEEeeHHHHhhch-----hhhccccCEEEEEchhcccch---hHHHHHHh-------hh
Confidence 3444444444322 35799999999875432 225788999999999998642 33333322 23
Q ss_pred CCceEEEEcccCCChhH----HHHHhcCCCCcee--ecCCCCCccCcEEEE--ecccc--------cchHHHHHh-cC--
Q 000129 1500 NKIRIVALSTSLANAKD----LGEWIGATSHGLF--NFPPGVRPVPLEIHI--QGVDI--------TNFEARMQA-MT-- 1560 (2114)
Q Consensus 1500 ~~~riV~lSATl~n~~d----la~wl~~~~~~~~--~f~~~~rpv~l~~~~--~~~~~--------~~~~~~~~~-~~-- 1560 (2114)
+..+++|||||+.+... +..++|.....+- .........++.+.. ..++. ..+...... ..
T Consensus 248 ~~~~~lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 327 (501)
T PHA02558 248 NCKFKFGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHT 327 (501)
T ss_pred ccceEEEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccH
Confidence 45679999999975321 2334442211000 000000011111111 01110 011111100 00
Q ss_pred ---HHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceE
Q 000129 1561 ---KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637 (2114)
Q Consensus 1561 ---~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~ 1637 (2114)
......+......+++++|||.+.++|+.++..|.. .+..+.
T Consensus 328 ~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~-----------------------------------~g~~v~ 372 (501)
T PHA02558 328 KRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKK-----------------------------------VYDKVY 372 (501)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHH-----------------------------------cCCCEE
Confidence 011111222224567899999999999888866632 233589
Q ss_pred eecCCCCHHHHHHHHHHHhcCCceEEEec-CccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCC
Q 000129 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMS-SSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLD 1716 (2114)
Q Consensus 1638 ~~H~~ls~~dR~~v~~~F~~g~i~VLVaT-~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~ 1716 (2114)
.+||+|+.++|..+++.|++|...||||| +++++|+|+|.+.+|| ....+.+...|+||+||++|.+ +
T Consensus 373 ~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vI----------l~~p~~s~~~~~QriGR~~R~~-~ 441 (501)
T PHA02558 373 YVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVI----------FAHPSKSKIIVLQSIGRVLRKH-G 441 (501)
T ss_pred EEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEE----------EecCCcchhhhhhhhhccccCC-C
Confidence 99999999999999999999999999998 8999999999999999 4555667889999999999985 3
Q ss_pred CceEEEEE
Q 000129 1717 NSGKCVIL 1724 (2114)
Q Consensus 1717 ~~G~~iil 1724 (2114)
....|.++
T Consensus 442 ~K~~~~i~ 449 (501)
T PHA02558 442 SKSIATVW 449 (501)
T ss_pred CCceEEEE
Confidence 34445444
No 155
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.95 E-value=8.4e-28 Score=275.90 Aligned_cols=330 Identities=18% Similarity=0.304 Sum_probs=232.1
Q ss_pred CCCCCC-CHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000129 491 KGMTQL-NRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (2114)
Q Consensus 491 ~g~~~l-~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~ 569 (2114)
.|+.+| ++.|.+++..+..++.+|.||+|||+||++||.||.|-.- + ..|++.|+.||+.++...
T Consensus 15 FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~-------------g-ITIV~SPLiALIkDQiDH 80 (641)
T KOG0352|consen 15 FGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHG-------------G-ITIVISPLIALIKDQIDH 80 (641)
T ss_pred hCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHhC-------------C-eEEEehHHHHHHHHHHHH
Confidence 356554 6899999999999999999999999999999999987541 1 689999999999999999
Q ss_pred HHHhhccCCcEEEEEeCCCccChh---------hhccceEEEcCHhHH--HHHHhccCCCcccccccEEEEeccccccc-
Q 000129 570 LSNRLQMYDVKVRELSGDQTLTRQ---------QIEETQIIVTTPEKW--DIITRKSGDRTYTQLVKLLIIDEIHLLHD- 637 (2114)
Q Consensus 570 ~~~~~~~~gi~v~~l~Gd~~~~~~---------~~~~~~IiV~TPek~--d~l~r~~~~~~~l~~v~liIiDEaH~l~d- 637 (2114)
+.++ .+.+..+.+..+...+ ......+++-|||.. +.+.........-..++++|+||||++..
T Consensus 81 L~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQW 156 (641)
T KOG0352|consen 81 LKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQW 156 (641)
T ss_pred HHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhh
Confidence 8764 4555555554433222 134678999999974 11111111112234578999999999954
Q ss_pred --CCchhHHHHHHHHHHHHhhccccccEEEEccccCC--hHHHHHHHhccccCceEeec-CCcccccceeEEEeeccCch
Q 000129 638 --NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYFD-NSYRPVPLSQQYIGIQVKKP 712 (2114)
Q Consensus 638 --~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn--~~dva~~l~~~~~~~~~~f~-~~~rpv~l~~~~~~~~~~~~ 712 (2114)
+++|.+-.+ ..+++..+++..|+|+||... -+|+..-|+.. .++-.|. +.||. .| |+.+.-++.
T Consensus 157 GHDFRPDYL~L-----G~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~--~PVAiFkTP~FR~-NL---FYD~~~K~~ 225 (641)
T KOG0352|consen 157 GHDFRPDYLTL-----GSLRSVCPGVPWVALTATANAKVQEDIAFQLKLR--NPVAIFKTPTFRD-NL---FYDNHMKSF 225 (641)
T ss_pred ccccCcchhhh-----hhHHhhCCCCceEEeecccChhHHHHHHHHHhhc--CcHHhccCcchhh-hh---hHHHHHHHH
Confidence 456655433 223455678999999999643 45666666543 3443333 23332 11 111111110
Q ss_pred -hHHHHHhhHHHHHHHH------HHhC--CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcc
Q 000129 713 -LQRFQLMNDLCYEKVV------AVAG--KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDM 783 (2114)
Q Consensus 713 -~~~~~~~~~~~~~~i~------~~~~--~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~ 783 (2114)
..-+..+.+.+...+- +..+ .+-.||||.||++|+.+|-.|...|+...
T Consensus 226 I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~---------------------- 283 (641)
T KOG0352|consen 226 ITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAM---------------------- 283 (641)
T ss_pred hhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchH----------------------
Confidence 0112222222222111 1111 35689999999999999998877664432
Q ss_pred cCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHH
Q 000129 784 VKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLD 863 (2114)
Q Consensus 784 ~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~ 863 (2114)
.+|+||-..+|.+|.+.+.+|++.||+||..+++|||-|+|++||+ ||++. +.+-
T Consensus 284 ---------------AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViH----W~~~q------n~Ag 338 (641)
T KOG0352|consen 284 ---------------AYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIH----WSPSQ------NLAG 338 (641)
T ss_pred ---------------HHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEe----cCchh------hhHH
Confidence 3499999999999999999999999999999999999999999999 99887 8899
Q ss_pred HHHhhcccCCCCCCCceEEEEEcCCCcHHHHHHhh
Q 000129 864 IMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLM 898 (2114)
Q Consensus 864 ~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~~ll 898 (2114)
|.|..|||||.| ..+.|-++++.++...+.-++
T Consensus 339 YYQESGRAGRDG--k~SyCRLYYsR~D~~~i~FLi 371 (641)
T KOG0352|consen 339 YYQESGRAGRDG--KRSYCRLYYSRQDKNALNFLV 371 (641)
T ss_pred HHHhccccccCC--CccceeeeecccchHHHHHHH
Confidence 999999999998 778999999998877665444
No 156
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.95 E-value=6.7e-27 Score=311.16 Aligned_cols=370 Identities=22% Similarity=0.211 Sum_probs=244.7
Q ss_pred CCCHHHHHHHHHHHcC--CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000129 495 QLNRVQSRVYKSALSS--ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~--~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (2114)
.||+.|.++++.+..+ ..+++++||||||||.+|+.++...+..+ .+++|++|+++|+.|++++|++
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g-----------~~vLvLvPt~~L~~Q~~~~l~~ 212 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQG-----------KQALVLVPEIALTPQMLARFRA 212 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcC-----------CeEEEEeCcHHHHHHHHHHHHH
Confidence 6899999999999874 56799999999999999998888777543 3799999999999999999998
Q ss_pred hhccCCcEEEEEeCCCccChhh-------hccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc--CCchhH
Q 000129 573 RLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD--NRGPVL 643 (2114)
Q Consensus 573 ~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d--~rg~~l 643 (2114)
.+ |.++..++|+.+...+. ....+|+|+|+..+ ...++++++|||||+|.... ..++.+
T Consensus 213 ~f---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal---------~~p~~~l~liVvDEeh~~s~~~~~~p~y 280 (679)
T PRK05580 213 RF---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL---------FLPFKNLGLIIVDEEHDSSYKQQEGPRY 280 (679)
T ss_pred Hh---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh---------cccccCCCEEEEECCCccccccCcCCCC
Confidence 65 67899999987654331 24679999999752 13467899999999997643 234433
Q ss_pred HHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccc-eeEEEeeccCchhHHHHHhhHH
Q 000129 644 ESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPL-SQQYIGIQVKKPLQRFQLMNDL 722 (2114)
Q Consensus 644 e~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l-~~~~~~~~~~~~~~~~~~~~~~ 722 (2114)
.. |-+...+....+.++|++||| |..+......... -........+...++ ...++.............+...
T Consensus 281 ~~---r~va~~ra~~~~~~~il~SAT-ps~~s~~~~~~g~--~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~ 354 (679)
T PRK05580 281 HA---RDLAVVRAKLENIPVVLGSAT-PSLESLANAQQGR--YRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPP 354 (679)
T ss_pred cH---HHHHHHHhhccCCCEEEEcCC-CCHHHHHHHhccc--eeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHH
Confidence 21 111111234568899999999 5555444432211 112222222211111 1223322110000000124455
Q ss_pred HHHHHHHHhC-CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhh----------cccCc-----
Q 000129 723 CYEKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHT----------DMVKS----- 786 (2114)
Q Consensus 723 ~~~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~----------~~~~~----- 786 (2114)
+++.+.+... ++|+|||+|.|..+..+...-+.....+..++..+..+.......|..| ..|..
T Consensus 355 l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~ 434 (679)
T PRK05580 355 LLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVP 434 (679)
T ss_pred HHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEE
Confidence 6666666655 5699999999988777666666555444444333332221111122221 12211
Q ss_pred ---------chhhhhcc-CceEEecCCCCH--HHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEE--EecceeccCC
Q 000129 787 ---------NDLKDLLP-YGFAIHHAGMTR--GDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVI--IKGTQIYNPE 852 (2114)
Q Consensus 787 ---------~~L~~ll~-~gv~~hHagl~~--~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vV--I~~~~~yd~~ 852 (2114)
+.|+..++ ..|...|+.+.. .+++.+++.|++|+++|||+|+++++|+|+|++++| ++.+...+.+
T Consensus 435 ~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~p 514 (679)
T PRK05580 435 VGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSP 514 (679)
T ss_pred eeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCC
Confidence 23445443 478888999874 678999999999999999999999999999999987 4545444444
Q ss_pred CCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcHHHHH
Q 000129 853 KGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYL 895 (2114)
Q Consensus 853 ~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~ 895 (2114)
..+..+-....|+|++|||||.+ ..|.+++.|..++...+.
T Consensus 515 dfra~Er~~~~l~q~~GRagR~~--~~g~viiqT~~p~~~~~~ 555 (679)
T PRK05580 515 DFRASERTFQLLTQVAGRAGRAE--KPGEVLIQTYHPEHPVIQ 555 (679)
T ss_pred ccchHHHHHHHHHHHHhhccCCC--CCCEEEEEeCCCCCHHHH
Confidence 44444556788999999999965 779999999887644443
No 157
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.95 E-value=5e-27 Score=296.29 Aligned_cols=342 Identities=24% Similarity=0.366 Sum_probs=222.0
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
++.-.|+.+|.+.+..|+ ++|+||++|||+|||.+|...+++++.... +.|||++||++-|+.|+...|
T Consensus 58 p~~~~lR~YQ~eivq~AL--gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p---------~~KiVF~aP~~pLv~QQ~a~~ 126 (746)
T KOG0354|consen 58 PTNLELRNYQEELVQPAL--GKNTIIALPTGSGKTFIAAVIMKNHFEWRP---------KGKVVFLAPTRPLVNQQIACF 126 (746)
T ss_pred cCcccccHHHHHHhHHhh--cCCeEEEeecCCCccchHHHHHHHHHhcCC---------cceEEEeeCCchHHHHHHHHH
Confidence 345589999999999999 678999999999999999999999987753 359999999999999999888
Q ss_pred HHhhccCCcEEEEEeCCC-ccCh--hhhccceEEEcCHhHH-HHHHhccCCCcccccccEEEEecccccccCCchhHHHH
Q 000129 571 SNRLQMYDVKVRELSGDQ-TLTR--QQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESI 646 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~-~~~~--~~~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~i 646 (2114)
+..+.+ -.+....||. .... ......+|+|+||..+ +.|.....+. ++.+.++||||||+-.. ...+..+
T Consensus 127 ~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~--ls~fs~iv~DE~Hra~k--n~~Y~~V 200 (746)
T KOG0354|consen 127 SIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDE--LSDFSLIVFDECHRTSK--NHPYNNI 200 (746)
T ss_pred hhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccc--cceEEEEEEcccccccc--cccHHHH
Confidence 877654 3444444553 2222 2356889999999987 4444444332 78899999999998543 3334455
Q ss_pred HHHHHHHHhhccccccEEEEccccCC-hHHHHHHHhc---cc--------------------------------------
Q 000129 647 VARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRV---NL-------------------------------------- 684 (2114)
Q Consensus 647 v~rl~~~~~~~~~~~riv~lSATlpn-~~dva~~l~~---~~-------------------------------------- 684 (2114)
+...+.. .....||+|||||+++ .+.+...+.. ..
T Consensus 201 mr~~l~~---k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~ 277 (746)
T KOG0354|consen 201 MREYLDL---KNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGM 277 (746)
T ss_pred HHHHHHh---hhccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHH
Confidence 5444332 2234499999999763 2222222110 00
Q ss_pred ----------cCceEeecC---Ccc--cc----------cceeE--EE---------------eec------------cC
Q 000129 685 ----------EKGLFYFDN---SYR--PV----------PLSQQ--YI---------------GIQ------------VK 710 (2114)
Q Consensus 685 ----------~~~~~~f~~---~~r--pv----------~l~~~--~~---------------~~~------------~~ 710 (2114)
..+++.... .+. ++ +-.++ +. ++. ..
T Consensus 278 ~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e 357 (746)
T KOG0354|consen 278 IIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEE 357 (746)
T ss_pred HHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccc
Confidence 000000000 000 00 00000 00 000 00
Q ss_pred chhHH--------------HHHhhH----------------HHHHHHHHH---hCCCeEEEEecChHHHHHHHHHHHHHh
Q 000129 711 KPLQR--------------FQLMND----------------LCYEKVVAV---AGKHQVLIFVHSRKETAKTARAIRDTA 757 (2114)
Q Consensus 711 ~~~~~--------------~~~~~~----------------~~~~~i~~~---~~~~~vLVFv~sr~~~~~~a~~L~~~~ 757 (2114)
...++ ...|++ .+.+.+.++ ....++||||.+|..|..+-++|....
T Consensus 358 ~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~ 437 (746)
T KOG0354|consen 358 VALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLH 437 (746)
T ss_pred cchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhh
Confidence 00111 011111 111222222 235689999999999999998887521
Q ss_pred hcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCC
Q 000129 758 LENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLP 837 (2114)
Q Consensus 758 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP 837 (2114)
....... .+++.|-+.-..||++.++..+++.|++|.++|||||++++.|+|+|
T Consensus 438 ~~~ir~~--------------------------~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ 491 (746)
T KOG0354|consen 438 ELGIKAE--------------------------IFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIG 491 (746)
T ss_pred hcccccc--------------------------eeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcc
Confidence 1000000 12223333334799999999999999999999999999999999999
Q ss_pred ceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcHH
Q 000129 838 AHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR 892 (2114)
Q Consensus 838 ~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~ 892 (2114)
.+++||. ||..+ ++...+||.|| ||. +.|+++++++..+..
T Consensus 492 ec~lVIc----Yd~~s------npIrmIQrrGR-gRa---~ns~~vll~t~~~~~ 532 (746)
T KOG0354|consen 492 ECNLVIC----YDYSS------NPIRMVQRRGR-GRA---RNSKCVLLTTGSEVI 532 (746)
T ss_pred cccEEEE----ecCCc------cHHHHHHHhcc-ccc---cCCeEEEEEcchhHH
Confidence 9999999 77766 78899999999 996 679999999854433
No 158
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.95 E-value=3.8e-27 Score=293.13 Aligned_cols=366 Identities=26% Similarity=0.400 Sum_probs=235.6
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.|..+|.+.+.. ...++.++|+|||.+|||.+-..+|-..+.... .--+||++|+++|+.|...++..++
T Consensus 511 ~Pd~WQ~elLDs-vDr~eSavIVAPTSaGKTfisfY~iEKVLResD---------~~VVIyvaPtKaLVnQvsa~VyaRF 580 (1330)
T KOG0949|consen 511 CPDEWQRELLDS-VDRNESAVIVAPTSAGKTFISFYAIEKVLRESD---------SDVVIYVAPTKALVNQVSANVYARF 580 (1330)
T ss_pred CCcHHHHHHhhh-hhcccceEEEeeccCCceeccHHHHHHHHhhcC---------CCEEEEecchHHHhhhhhHHHHHhh
Confidence 578899999985 466677999999999999998888877776542 2379999999999999999999888
Q ss_pred ccCC-cEEEEEeCCCccChhh-hccceEEEcCHhHHHHHHhc-cCCCcccccccEEEEeccccccc-CCchhHHHHHHHH
Q 000129 575 QMYD-VKVRELSGDQTLTRQQ-IEETQIIVTTPEKWDIITRK-SGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVART 650 (2114)
Q Consensus 575 ~~~g-i~v~~l~Gd~~~~~~~-~~~~~IiV~TPek~d~l~r~-~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~rl 650 (2114)
.... .+-..+.|+...+-+. .-+|+|+||-||.++.++-. .....+..+++++|+||+|+++. +-|-.+|.++-.
T Consensus 581 ~~~t~~rg~sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~l- 659 (1330)
T KOG0949|consen 581 DTKTFLRGVSLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLL- 659 (1330)
T ss_pred ccCccccchhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHh-
Confidence 4221 2223334443332221 12799999999999766544 23346889999999999999987 567667765543
Q ss_pred HHHHhhccccccEEEEccccCChHHHHHHHhccc---cCc--eEeecCC---------------------------cccc
Q 000129 651 VRQIETTKEHIRLVGLSATLPNYEDVALFLRVNL---EKG--LFYFDNS---------------------------YRPV 698 (2114)
Q Consensus 651 ~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~---~~~--~~~f~~~---------------------------~rpv 698 (2114)
..+.++++|||+.|+..+..|+.... ... ...+... .|.+
T Consensus 660 --------i~CP~L~LSATigN~~l~qkWlnq~~R~~sr~~eli~~~erySel~l~v~n~~~e~n~~yl~~~falgerai 731 (1330)
T KOG0949|consen 660 --------IPCPFLVLSATIGNPNLFQKWLNQRGRAMSRNAELIDYGERYSELGLVVYNRMNEGNAYYLLKLFALGERAI 731 (1330)
T ss_pred --------cCCCeeEEecccCCHHHHHHHHHHHHhhcCCCeeeeehhhhhhhhcceeeccCCCCcchHHHHHHhhchhhc
Confidence 36789999999999999999997210 000 0000000 0000
Q ss_pred cc----------eeEEEeecc----------------------------CchhH---------------------HHHHh
Q 000129 699 PL----------SQQYIGIQV----------------------------KKPLQ---------------------RFQLM 719 (2114)
Q Consensus 699 ~l----------~~~~~~~~~----------------------------~~~~~---------------------~~~~~ 719 (2114)
.. ...+..+.. ..... +.+..
T Consensus 732 ~~~~~~~~~s~dd~~~lafe~~~~l~~~k~~kl~~k~~p~~~fe~~~~~~k~~~e~~r~~~~l~~~f~e~s~~q~kik~~ 811 (1330)
T KOG0949|consen 732 IVSLRELSESEDDNVVLAFEPLSCLTLRKLNKLLIKITPENFFESNIVTKKEVGEYGRHLLELFQGFIEDSLTQKQIKYV 811 (1330)
T ss_pred cchhhccccCCCCceEeeccchhHHHHHHHHHHHhhcCHHHhhhhhhheechHHHHHHHHHHHHHHhhhcChHHHHHHHH
Confidence 00 000000000 00000 00000
Q ss_pred h-------------------HHHHHHHH----HHhC--CCeEEEEecChHHHHHHHHHHHHHhhcccc---ccc------
Q 000129 720 N-------------------DLCYEKVV----AVAG--KHQVLIFVHSRKETAKTARAIRDTALENDT---LGR------ 765 (2114)
Q Consensus 720 ~-------------------~~~~~~i~----~~~~--~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~---l~~------ 765 (2114)
. +.+.+.+. +... .-|.|+|--.|..|+++|..+......... -..
T Consensus 812 ~ki~~k~Vnkqle~~~~ys~e~i~~nil~ll~dLkEK~~lpaicfn~dr~fcekla~kv~~~Le~~e~Ee~k~k~m~k~k 891 (1330)
T KOG0949|consen 812 YKLQTKEVNKQLESVVDYSSEYILENILDLLMDLKEKNMLPAICFNTDRDFCEKLALKVHRQLESMEMEEKKDKLMEKMK 891 (1330)
T ss_pred HHhhhhhhhhHhhhcccCcHHHHHHHHHHHHHHHHhccccchhcccchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 0 00001111 1111 348899999998888877655432110000 000
Q ss_pred ---------------------------------------ccccCch-hHHHHHhhhccc--CcchhhhhccCceEEecCC
Q 000129 766 ---------------------------------------FLKEDSV-SREILQSHTDMV--KSNDLKDLLPYGFAIHHAG 803 (2114)
Q Consensus 766 ---------------------------------------~l~~~~~-~~~~l~~~~~~~--~~~~L~~ll~~gv~~hHag 803 (2114)
|+..... ....+..+.... .+..+-+++-+|+|+||||
T Consensus 892 k~~~~a~~r~Kt~e~~~k~~~~~ek~~~~k~d~~~~~~~f~dp~~~~~~~~f~~~~~~~g~~~~~~id~lyRGiG~HHag 971 (1330)
T KOG0949|consen 892 KEAKRARDREKTKESWIKESIAAEKSFQMKNDKKNIKYTFLDPLTKLTDYEFEEETKFIGNTDFEFIDMLYRGIGVHHAG 971 (1330)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccceEEecCcccccchhhhhhhccccCCCcHHHHHHHHhcccccccc
Confidence 0000000 000000001111 1245667788999999999
Q ss_pred CCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEE
Q 000129 804 MTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883 (2114)
Q Consensus 804 l~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~i 883 (2114)
|.+..|..||-+||.|++.||+||.||+-|||.|..+||+-++ .-.+++..|.||+|||||.|||..|.++
T Consensus 972 lNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gD---------sLQL~plny~QmaGRAGRRGFD~lGnV~ 1042 (1330)
T KOG0949|consen 972 LNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGD---------SLQLDPLNYKQMAGRAGRRGFDTLGNVV 1042 (1330)
T ss_pred cchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEecc---------ccccCchhHHhhhccccccccccccceE
Confidence 9999999999999999999999999999999999999999643 2346778899999999999999999988
Q ss_pred EEcCC
Q 000129 884 IITGH 888 (2114)
Q Consensus 884 il~~~ 888 (2114)
.+--+
T Consensus 1043 FmgiP 1047 (1330)
T KOG0949|consen 1043 FMGIP 1047 (1330)
T ss_pred EEeCc
Confidence 87554
No 159
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.95 E-value=2.4e-26 Score=290.23 Aligned_cols=343 Identities=18% Similarity=0.260 Sum_probs=224.0
Q ss_pred HhcCCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHh
Q 000129 1335 LYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKF 1414 (2114)
Q Consensus 1335 l~~gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f 1414 (2114)
+|...-.++.+|.+....++ ++|+||++|||+|||++|...+++++.. .+.+ |+|+++|++-|+.|+...++ .+
T Consensus 56 ~~p~~~~lR~YQ~eivq~AL--gkNtii~lPTG~GKTfIAa~Vm~nh~rw-~p~~--KiVF~aP~~pLv~QQ~a~~~-~~ 129 (746)
T KOG0354|consen 56 IYPTNLELRNYQEELVQPAL--GKNTIIALPTGSGKTFIAAVIMKNHFEW-RPKG--KVVFLAPTRPLVNQQIACFS-IY 129 (746)
T ss_pred cccCcccccHHHHHHhHHhh--cCCeEEEeecCCCccchHHHHHHHHHhc-CCcc--eEEEeeCCchHHHHHHHHHh-hc
Confidence 34445689999999999998 7789999999999999999999999998 4556 99999999999999997766 45
Q ss_pred cCCCCcEEEEEcCC-cccc--hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHH
Q 000129 1415 GQGLGMRVVELTGE-TAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRM 1491 (2114)
Q Consensus 1415 ~~~~g~~v~~l~G~-~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl 1491 (2114)
+. +..+....|+ .+.. ...+...+|+|+||+.+.+-+....... ++.+.++||||||+-.. ...|-.++..+
T Consensus 130 ~~--~~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~-ls~fs~iv~DE~Hra~k--n~~Y~~Vmr~~ 204 (746)
T KOG0354|consen 130 LI--PYSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDE-LSDFSLIVFDECHRTSK--NHPYNNIMREY 204 (746)
T ss_pred cC--cccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccc-cceEEEEEEcccccccc--cccHHHHHHHH
Confidence 43 2444445555 3322 3455677999999999877666533333 88999999999997643 34555555444
Q ss_pred HHHHhhcCCCceEEEEcccCCCh-hHHHHHhcCCCCce-----------eecCCCC--CccCcEEE--------------
Q 000129 1492 RYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGL-----------FNFPPGV--RPVPLEIH-------------- 1543 (2114)
Q Consensus 1492 ~~i~~~~~~~~riV~lSATl~n~-~dla~wl~~~~~~~-----------~~f~~~~--rpv~l~~~-------------- 1543 (2114)
.... ....||+|||||+++. ..+...+..-...+ +...... .|+++...
T Consensus 205 l~~k---~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p 281 (746)
T KOG0354|consen 205 LDLK---NQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEP 281 (746)
T ss_pred HHhh---hccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHH
Confidence 3332 2344999999999852 23333322110000 0000000 00000000
Q ss_pred -------------------------------Eecccccch--------HH------------------------------
Q 000129 1544 -------------------------------IQGVDITNF--------EA------------------------------ 1554 (2114)
Q Consensus 1544 -------------------------------~~~~~~~~~--------~~------------------------------ 1554 (2114)
..++..... ..
T Consensus 282 ~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~ 361 (746)
T KOG0354|consen 282 LLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALK 361 (746)
T ss_pred HHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchh
Confidence 000000000 00
Q ss_pred H--HH------------hcC------------HHHHHHHH----HHh--cCCCCEEEEeCChHHHHHHHHHHHHhhccCC
Q 000129 1555 R--MQ------------AMT------------KPTFTAIV----QHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDG 1602 (2114)
Q Consensus 1555 ~--~~------------~~~------------~~~~~~i~----~~l--~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~ 1602 (2114)
+ .. .|. .+.+..+. .+. .+..++||||.+|..|..+-..|..... .+
T Consensus 362 k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~-~~ 440 (746)
T KOG0354|consen 362 KYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHE-LG 440 (746)
T ss_pred HHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhh-cc
Confidence 0 00 000 01111111 111 2345799999999999888877754111 11
Q ss_pred cccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEE
Q 000129 1603 DQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVV 1682 (2114)
Q Consensus 1603 ~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI 1682 (2114)
.... .+.+.|-+.--.||++.++..+++.|++|.++|||||++++.|+|++.+.+||
T Consensus 441 ir~~-----------------------~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVI 497 (746)
T KOG0354|consen 441 IKAE-----------------------IFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVI 497 (746)
T ss_pred cccc-----------------------eeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEE
Confidence 1101 11222333333789999999999999999999999999999999999999999
Q ss_pred EeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCc
Q 000129 1683 MGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1683 ~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~ 1729 (2114)
.|+.-.++...+||+|| || ...|+|+++++...
T Consensus 498 ----------cYd~~snpIrmIQrrGR-gR---a~ns~~vll~t~~~ 530 (746)
T KOG0354|consen 498 ----------CYDYSSNPIRMVQRRGR-GR---ARNSKCVLLTTGSE 530 (746)
T ss_pred ----------EecCCccHHHHHHHhcc-cc---ccCCeEEEEEcchh
Confidence 67777789999999999 99 47999999998544
No 160
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.94 E-value=9.3e-26 Score=292.67 Aligned_cols=411 Identities=16% Similarity=0.210 Sum_probs=289.2
Q ss_pred CHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEE
Q 000129 1343 NPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRV 1422 (2114)
Q Consensus 1343 ~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v 1422 (2114)
.+.+.+.++ +++.+++++|+|.||||||+.....|+....... +..+++|..|+|--|..+++++....+...|-.|
T Consensus 175 ~~~r~~Il~-~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~--~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~V 251 (924)
T KOG0920|consen 175 YKMRDTILD-AIEENQVVVISGETGCGKTTQVPQFILDEAIESG--AACNIICTQPRRISAISVAERVAKERGESLGEEV 251 (924)
T ss_pred HHHHHHHHH-HHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC--CCCeEEecCCchHHHHHHHHHHHHHhccccCCee
Confidence 344444454 4466888999999999999999999999877644 4459999999999999999999877776667666
Q ss_pred EEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCc
Q 000129 1423 VELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKI 1502 (2114)
Q Consensus 1423 ~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~ 1502 (2114)
+.-.+-.+. .-..+.+.+||.+.+. |+......+.++.++|+||+|.-.-+. .. ++--++.+... ++++
T Consensus 252 GYqvrl~~~---~s~~t~L~fcTtGvLL---r~L~~~~~l~~vthiivDEVHER~i~~-Df---lLi~lk~lL~~-~p~L 320 (924)
T KOG0920|consen 252 GYQVRLESK---RSRETRLLFCTTGVLL---RRLQSDPTLSGVTHIIVDEVHERSINT-DF---LLILLKDLLPR-NPDL 320 (924)
T ss_pred eEEEeeecc---cCCceeEEEecHHHHH---HHhccCcccccCceeeeeeEEEccCCc-cc---HHHHHHHHhhh-CCCc
Confidence 654443222 2234789999999854 444457789999999999999543221 12 44444444433 5799
Q ss_pred eEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEe-------cccccchHHH----------------HHhc
Q 000129 1503 RIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQ-------GVDITNFEAR----------------MQAM 1559 (2114)
Q Consensus 1503 riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~-------~~~~~~~~~~----------------~~~~ 1559 (2114)
++|+||||+ |++.+..|+|..+ ++..+. |..|+..++. .+........ ...+
T Consensus 321 kvILMSAT~-dae~fs~YF~~~p--vi~i~g--rtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 395 (924)
T KOG0920|consen 321 KVILMSATL-DAELFSDYFGGCP--VITIPG--RTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEI 395 (924)
T ss_pred eEEEeeeec-chHHHHHHhCCCc--eEeecC--CCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccc
Confidence 999999999 7999999999654 222222 2222221110 0000000000 0012
Q ss_pred CHHHHHHHHHHhc---CCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccce
Q 000129 1560 TKPTFTAIVQHAK---NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGV 1636 (2114)
Q Consensus 1560 ~~~~~~~i~~~l~---~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV 1636 (2114)
.......+..++. ..+.+|||.|+..++..+...|...+...+. .+.-|
T Consensus 396 d~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~----------------------------~~~~i 447 (924)
T KOG0920|consen 396 DYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADS----------------------------LKFAI 447 (924)
T ss_pred cHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccc----------------------------cceEE
Confidence 3333444444433 3567999999999998888777443321111 12348
Q ss_pred EeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEE----EeeeEecCCcCc----CCCCCHhHHHHhHc
Q 000129 1637 GYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVV----MGTQYYDGQENA----HTDYPVTDLLQMMG 1708 (2114)
Q Consensus 1637 ~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI----~gt~~yd~~~~~----~~~~s~~~~lQr~G 1708 (2114)
..+|+.|+..+++.|+.....|..+|++||++++.+|.||++.+|| +.-..||...+. ..+.|.+...||.|
T Consensus 448 lplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~G 527 (924)
T KOG0920|consen 448 LPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRG 527 (924)
T ss_pred EeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcc
Confidence 8999999999999999999999999999999999999999999999 334678877543 34678899999999
Q ss_pred ccCCCCCCCceEEEEEeecCcHHHHHHHHHhccCCC---------CccccCCCccchHHHHHH--------HHHHHHHHH
Q 000129 1709 HASRPLLDNSGKCVILCHAPRKEYYKKFLRLTQNPN---------YYNLQGVSHRHLSDHLSE--------LVENTISDL 1771 (2114)
Q Consensus 1709 RAGR~~~~~~G~~iil~~~~~~~~~~~~lRl~~nP~---------~y~l~~~s~~~l~~~lse--------lve~~l~~L 1771 (2114)
|||| -..|.||.++.... |.++.....-|. ...++-+....+.+||+. .|..++..|
T Consensus 528 RAGR---v~~G~cy~L~~~~~---~~~~~~~~q~PEilR~pL~~l~L~iK~l~~~~~~~fLskaldpP~~~~v~~a~~~L 601 (924)
T KOG0920|consen 528 RAGR---VRPGICYHLYTRSR---YEKLMLAYQLPEILRTPLEELCLHIKVLEQGSIKAFLSKALDPPPADAVDLAIERL 601 (924)
T ss_pred cccC---ccCCeeEEeechhh---hhhcccccCChHHHhChHHHhhheeeeccCCCHHHHHHHhcCCCChHHHHHHHHHH
Confidence 9999 47999999998654 333332222222 223344455556677764 588999999
Q ss_pred HHCCCceecCCCccccCcccchhhhcccCHhHHHHHHhh
Q 000129 1772 EASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSS 1810 (2114)
Q Consensus 1772 ~~~~~I~~~~~~~~~~t~lG~i~s~y~i~~~T~~~f~~s 1810 (2114)
.+.|+++.++ .+|++|+.++.+|+++...+++...
T Consensus 602 ~~igaL~~~e----~LT~LG~~la~lPvd~~igK~ll~g 636 (924)
T KOG0920|consen 602 KQIGALDESE----ELTPLGLHLASLPVDVRIGKLLLFG 636 (924)
T ss_pred HHhccccCcc----cchHHHHHHHhCCCccccchhheeh
Confidence 9999997655 6999999999999999999987653
No 161
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=2.7e-26 Score=295.00 Aligned_cols=365 Identities=18% Similarity=0.192 Sum_probs=231.5
Q ss_pred EEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccch-----hh
Q 000129 1361 LVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL-----KL 1435 (2114)
Q Consensus 1361 li~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~-----~~ 1435 (2114)
|+.||||||||.+|+.++...+.. ++ +++|++|+++|+.|+++++++.|+ .++..++|+.+... ..
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~---g~--~vLvlvP~i~L~~Q~~~~l~~~f~----~~v~vlhs~~~~~er~~~~~~ 71 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL---GK--SVLVLVPEIALTPQMIQRFKYRFG----SQVAVLHSGLSDSEKLQAWRK 71 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc---CC--eEEEEeCcHHHHHHHHHHHHHHhC----CcEEEEECCCCHHHHHHHHHH
Confidence 578999999999997776655544 44 899999999999999999998774 56888898776532 12
Q ss_pred c--cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC--CCCchHHHH-HHHHHHHHhhcCCCceEEEEccc
Q 000129 1436 L--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG--QGGPVLEVI-VSRMRYIASQVENKIRIVALSTS 1510 (2114)
Q Consensus 1436 l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~--~~g~~le~i-~srl~~i~~~~~~~~riV~lSAT 1510 (2114)
+ ..++|||+|+..+. ..+.++++|||||+|.... ..++.|..- +..++.. ..+.++|++|||
T Consensus 72 ~~~g~~~IVVGTrsalf---------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~----~~~~~vil~SAT 138 (505)
T TIGR00595 72 VKNGEILVVIGTRSALF---------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAK----KFNCPVVLGSAT 138 (505)
T ss_pred HHcCCCCEEECChHHHc---------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHH----hcCCCEEEEeCC
Confidence 2 24589999987531 3478899999999997653 234443221 1222211 247899999999
Q ss_pred CCChhHHHHHhcCCCCceeecCC--CCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHH-
Q 000129 1511 LANAKDLGEWIGATSHGLFNFPP--GVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYV- 1587 (2114)
Q Consensus 1511 l~n~~dla~wl~~~~~~~~~f~~--~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a- 1587 (2114)
+ ..+.+....... ........ ..++.| .+.+....... ....+...++..+.+.+..++++|||+|+|.-+
T Consensus 139 P-sles~~~~~~g~-~~~~~l~~r~~~~~~p-~v~vid~~~~~---~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~ 212 (505)
T TIGR00595 139 P-SLESYHNAKQKA-YRLLVLTRRVSGRKPP-EVKLIDMRKEP---RQSFLSPELITAIEQTLAAGEQSILFLNRRGYSK 212 (505)
T ss_pred C-CHHHHHHHhcCC-eEEeechhhhcCCCCC-eEEEEeccccc---ccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCC
Confidence 5 454444332211 11111111 112222 22332221111 012345667788888888899999999998743
Q ss_pred ----HHHHHH-------------------HHHhhccCCcccccccCCCcccchhh---HhhhhHHHHHHHhccceEeecC
Q 000129 1588 ----RLTAVD-------------------LMTYSSMDGDQKSAFLLWPAEEVEPF---IDNIQEEMLKATLRHGVGYLHE 1641 (2114)
Q Consensus 1588 ----~~la~~-------------------L~~~~~~~~~~~~~~l~~~~~~l~~~---~~~i~d~~L~~~l~~gV~~~H~ 1641 (2114)
..+... .|++|.........+..|....+... .+++.+..-..+...+|..+|+
T Consensus 213 ~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~ 292 (505)
T TIGR00595 213 NLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDS 292 (505)
T ss_pred eeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEec
Confidence 222211 12333333222222555555444432 4555554444445678999999
Q ss_pred CCCHHHH--HHHHHHHhcCCceEEEecCccccccCCCCcEEEE-EeeeEe-cCCcCcCCCCCHhHHHHhHcccCCCCCCC
Q 000129 1642 GLNKTDQ--EVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVV-MGTQYY-DGQENAHTDYPVTDLLQMMGHASRPLLDN 1717 (2114)
Q Consensus 1642 ~ls~~dR--~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI-~gt~~y-d~~~~~~~~~s~~~~lQr~GRAGR~~~~~ 1717 (2114)
+++...+ ..+++.|++|+++|||+|+++++|+|+|++.+|+ .+.... .....+........|+|++|||||. +.
T Consensus 293 d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~--~~ 370 (505)
T TIGR00595 293 DTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRA--ED 370 (505)
T ss_pred ccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCC--CC
Confidence 9987766 8999999999999999999999999999998664 221100 0000011112357899999999997 67
Q ss_pred ceEEEEEeecCcHHHH------------HHHH---HhccCCCCccccCCCccc
Q 000129 1718 SGKCVILCHAPRKEYY------------KKFL---RLTQNPNYYNLQGVSHRH 1755 (2114)
Q Consensus 1718 ~G~~iil~~~~~~~~~------------~~~l---Rl~~nP~~y~l~~~s~~~ 1755 (2114)
.|.+++.+..++...+ ..-+ +....|+|..+..+...+
T Consensus 371 ~g~viiqt~~p~~~~~~~~~~~d~~~f~~~el~~R~~~~~PPf~~l~~i~~~~ 423 (505)
T TIGR00595 371 PGQVIIQTYNPNHPAIQAALTGDYEAFYEQELAQRRALNYPPFTRLIRLIFRG 423 (505)
T ss_pred CCEEEEEeCCCCCHHHHHHHhCCHHHHHHHHHHHHHHcCCCchhcEEEEEEec
Confidence 8999999977764322 2222 667899999877654433
No 162
>PRK14701 reverse gyrase; Provisional
Probab=99.94 E-value=2.1e-26 Score=322.48 Aligned_cols=327 Identities=18% Similarity=0.215 Sum_probs=215.8
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.|| +|+++|.++++.++.+.+ ++++||||||||++++++.+.... .+.+++||+||++|+.|+++.+
T Consensus 76 ~G~-~pt~iQ~~~i~~il~G~d-~li~APTGsGKTl~~~~~al~~~~-----------~g~~aLVl~PTreLa~Qi~~~l 142 (1638)
T PRK14701 76 TGF-EFWSIQKTWAKRILRGKS-FSIVAPTGMGKSTFGAFIALFLAL-----------KGKKCYIILPTTLLVKQTVEKI 142 (1638)
T ss_pred hCC-CCCHHHHHHHHHHHcCCC-EEEEEcCCCCHHHHHHHHHHHHHh-----------cCCeEEEEECHHHHHHHHHHHH
Confidence 488 699999999999998865 999999999999976665554322 1348999999999999999999
Q ss_pred HHhhccC--CcEEEEEeCCCccChhh-------hccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccccccc---
Q 000129 571 SNRLQMY--DVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD--- 637 (2114)
Q Consensus 571 ~~~~~~~--gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l~d--- 637 (2114)
+.++..+ ++++..++|+.+...+. .+.++|+|+||+++ +.+.+. ...++++|||||||++.+
T Consensus 143 ~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-----~~~~i~~iVVDEAD~ml~~~k 217 (1638)
T PRK14701 143 ESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-----KHLKFDFIFVDDVDAFLKASK 217 (1638)
T ss_pred HHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-----hhCCCCEEEEECceecccccc
Confidence 9977654 56778888987765432 13589999999986 332221 125689999999999864
Q ss_pred ---------CCchhHHH----HHH---------------HHHHHHhhcccccc-EEEEccccCChHHHHHHHhccccCce
Q 000129 638 ---------NRGPVLES----IVA---------------RTVRQIETTKEHIR-LVGLSATLPNYEDVALFLRVNLEKGL 688 (2114)
Q Consensus 638 ---------~rg~~le~----iv~---------------rl~~~~~~~~~~~r-iv~lSATlpn~~dva~~l~~~~~~~~ 688 (2114)
++.+.+.. ++. ++.......+...+ ++.+|||++...+...+++... .
T Consensus 218 nid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l---~ 294 (1638)
T PRK14701 218 NIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELL---G 294 (1638)
T ss_pred ccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCe---E
Confidence 44444432 211 11111112233444 5779999986556666664221 1
Q ss_pred EeecCCcccc--cceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHH---HHHHHHHHHHhhccccc
Q 000129 689 FYFDNSYRPV--PLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKET---AKTARAIRDTALENDTL 763 (2114)
Q Consensus 689 ~~f~~~~rpv--~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~---~~~a~~L~~~~~~~~~l 763 (2114)
|..+ ..++. .+.+.++... ...+ .. +...+ ... +.++||||+|++.+ +.++..|...++.
T Consensus 295 f~v~-~~~~~lr~i~~~yi~~~---~~~k-~~----L~~ll-~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~---- 359 (1638)
T PRK14701 295 FEVG-SGRSALRNIVDVYLNPE---KIIK-EH----VRELL-KKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFK---- 359 (1638)
T ss_pred EEec-CCCCCCCCcEEEEEECC---HHHH-HH----HHHHH-HhC-CCCeEEEEeccccchHHHHHHHHHHHCCCe----
Confidence 2222 22221 2222332211 1111 11 22222 222 46899999998864 7888888875433
Q ss_pred ccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEech----HhhhhcCCCc-
Q 000129 764 GRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTA----TLAWGVNLPA- 838 (2114)
Q Consensus 764 ~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~----tla~GVdlP~- 838 (2114)
++.+||+ |..+++.|++|+++|||||+ +++||||+|+
T Consensus 360 ---------------------------------a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~ 401 (1638)
T PRK14701 360 ---------------------------------IELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPER 401 (1638)
T ss_pred ---------------------------------EEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCc
Confidence 4556885 88999999999999999994 8999999999
Q ss_pred eEEEEecceeccCCCCccccCCHH-------------HHHHhhcccCCCCCCCceEEEEEcCCCcHHHHHHhhcC
Q 000129 839 HTVIIKGTQIYNPEKGAWTELSPL-------------DIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQ 900 (2114)
Q Consensus 839 v~vVI~~~~~yd~~~g~~~~~s~~-------------~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~~ll~~ 900 (2114)
+++||+ |+.|+.++ |+. ..+++.|||||.| ..+.++............+++..
T Consensus 402 Vryvi~----~~~Pk~~~---~~e~~~~~~~~~~~~~~~~~~~~~a~~~g--~~~~~~~~~~~~~~~~~~~~l~~ 467 (1638)
T PRK14701 402 IRFAVF----YGVPKFRF---RVDLEDPTIYRILGLLSEILKIEEELKEG--IPIEGVLDVFPEDVEFLRSILKD 467 (1638)
T ss_pred cCEEEE----eCCCCCCc---chhhcccchhhhhcchHHHHHhhhhcccC--CcchhHHHhHHHHHHHHHHHhcc
Confidence 999999 77665322 222 3456679999987 45666544444444445545444
No 163
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.94 E-value=3.3e-26 Score=302.89 Aligned_cols=333 Identities=21% Similarity=0.331 Sum_probs=251.4
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHH
Q 000129 1332 YEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2114)
Q Consensus 1332 ~~~l~~gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~ 1411 (2114)
+...| |.+.|+|-|.+|+..++.+.+ ++|..|||+||++||++|++- .++ -.|+|.|..+|+..+...+.
T Consensus 256 l~~~F-g~~~FR~~Q~eaI~~~l~Gkd-~fvlmpTG~GKSLCYQlPA~l------~~g--itvVISPL~SLm~DQv~~L~ 325 (941)
T KOG0351|consen 256 LKEVF-GHKGFRPNQLEAINATLSGKD-CFVLMPTGGGKSLCYQLPALL------LGG--VTVVISPLISLMQDQVTHLS 325 (941)
T ss_pred HHHHh-ccccCChhHHHHHHHHHcCCc-eEEEeecCCceeeEeeccccc------cCC--ceEEeccHHHHHHHHHHhhh
Confidence 33444 599999999999999888777 999999999999999999872 234 78999999999998877653
Q ss_pred HHhcCCCCcEEEEEcCCcccc-----hhhccCC----cEEEEChhhHHHHHhhhcccccccc---eeEEEecccccccCC
Q 000129 1412 IKFGQGLGMRVVELTGETAMD-----LKLLEKG----QIIISTPEKWDALSRRWKQRKYVQQ---VSLFIIDELHLIGGQ 1479 (2114)
Q Consensus 1412 ~~f~~~~g~~v~~l~G~~~~~-----~~~l~~~----~IIV~TPe~l~~l~r~~~~~~~l~~---v~liIiDEaH~l~~~ 1479 (2114)
+ .++....++|+.... .+.+..+ +|++.|||++...-+-......+.. +.++||||||++..|
T Consensus 326 ----~-~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqW 400 (941)
T KOG0351|consen 326 ----K-KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQW 400 (941)
T ss_pred ----h-cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhh
Confidence 1 378888888877653 2333333 8999999998543222112223444 899999999999755
Q ss_pred CCchHHHHHHHHHHHHhhcCCCceEEEEcccCCC--hhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHH
Q 000129 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN--AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQ 1557 (2114)
Q Consensus 1480 ~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n--~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~ 1557 (2114)
|+.+..-..++..+....+ .+.+|++|||... .+|+.+-|+.....++. .+..+-.+...+..-....
T Consensus 401 -gHdFRp~Yk~l~~l~~~~~-~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~--~sfnR~NL~yeV~~k~~~~------ 470 (941)
T KOG0351|consen 401 -GHDFRPSYKRLGLLRIRFP-GVPFIALTATATERVREDVIRSLGLRNPELFK--SSFNRPNLKYEVSPKTDKD------ 470 (941)
T ss_pred -cccccHHHHHHHHHHhhCC-CCCeEEeehhccHHHHHHHHHHhCCCCcceec--ccCCCCCceEEEEeccCcc------
Confidence 4667777777776665544 4899999999844 45999999987655443 3333334444443322100
Q ss_pred hcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceE
Q 000129 1558 AMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637 (2114)
Q Consensus 1558 ~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~ 1637 (2114)
........+ ....+..++||||.+|+.|+.++..|.. .+...+
T Consensus 471 -~~~~~~~~~-~~~~~~~s~IIYC~sr~~ce~vs~~L~~-----------------------------------~~~~a~ 513 (941)
T KOG0351|consen 471 -ALLDILEES-KLRHPDQSGIIYCLSRKECEQVSAVLRS-----------------------------------LGKSAA 513 (941)
T ss_pred -chHHHHHHh-hhcCCCCCeEEEeCCcchHHHHHHHHHH-----------------------------------hchhhH
Confidence 001111222 2226778899999999999999977743 124578
Q ss_pred eecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCC
Q 000129 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDN 1717 (2114)
Q Consensus 1638 ~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~ 1717 (2114)
+||+||++.+|..|.+.|..++++|+|||=.+.+|+|.|+|+.|| |+..|.++..|.|-+|||||. +.
T Consensus 514 ~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~Vi----------H~~lPks~E~YYQE~GRAGRD--G~ 581 (941)
T KOG0351|consen 514 FYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVI----------HYSLPKSFEGYYQEAGRAGRD--GL 581 (941)
T ss_pred hhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEE----------ECCCchhHHHHHHhccccCcC--CC
Confidence 999999999999999999999999999999999999999999999 999999999999999999998 57
Q ss_pred ceEEEEEeecCcHHHHHHHHH
Q 000129 1718 SGKCVILCHAPRKEYYKKFLR 1738 (2114)
Q Consensus 1718 ~G~~iil~~~~~~~~~~~~lR 1738 (2114)
...|++|+...+....+.+++
T Consensus 582 ~s~C~l~y~~~D~~~l~~ll~ 602 (941)
T KOG0351|consen 582 PSSCVLLYGYADISELRRLLT 602 (941)
T ss_pred cceeEEecchhHHHHHHHHHH
Confidence 899999998876655555553
No 164
>PRK09401 reverse gyrase; Reviewed
Probab=99.94 E-value=6.8e-26 Score=312.21 Aligned_cols=304 Identities=23% Similarity=0.212 Sum_probs=200.1
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
|+ +|+++|..+++.++.+. +++++||||||||. |.++++..+.. .+.+++||+||++||.|+++.++
T Consensus 78 G~-~pt~iQ~~~i~~il~g~-dv~i~ApTGsGKT~-f~l~~~~~l~~----------~g~~alIL~PTreLa~Qi~~~l~ 144 (1176)
T PRK09401 78 GS-KPWSLQRTWAKRLLLGE-SFAIIAPTGVGKTT-FGLVMSLYLAK----------KGKKSYIIFPTRLLVEQVVEKLE 144 (1176)
T ss_pred CC-CCcHHHHHHHHHHHCCC-cEEEEcCCCCCHHH-HHHHHHHHHHh----------cCCeEEEEeccHHHHHHHHHHHH
Confidence 66 89999999999998774 59999999999996 44455444432 13589999999999999999999
Q ss_pred HhhccCCcEEEEEeCCCccCh---h-h-----hccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-C---
Q 000129 572 NRLQMYDVKVRELSGDQTLTR---Q-Q-----IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N--- 638 (2114)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~---~-~-----~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~--- 638 (2114)
++....++.+..++|+..... . . ...++|+|+||+++...... .....+++|||||||++.+ .
T Consensus 145 ~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~----l~~~~~~~lVvDEaD~~L~~~k~i 220 (1176)
T PRK09401 145 KFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE----LPKKKFDFVFVDDVDAVLKSSKNI 220 (1176)
T ss_pred HHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh----ccccccCEEEEEChHHhhhcccch
Confidence 998888888888887765321 1 1 13589999999987332221 2345599999999999875 1
Q ss_pred --------Cc-hhHHHHHHHHHH----------------HHhh-ccccccEEEEccccCChHHHH-HHHhccccCceEee
Q 000129 639 --------RG-PVLESIVARTVR----------------QIET-TKEHIRLVGLSATLPNYEDVA-LFLRVNLEKGLFYF 691 (2114)
Q Consensus 639 --------rg-~~le~iv~rl~~----------------~~~~-~~~~~riv~lSATlpn~~dva-~~l~~~~~~~~~~f 691 (2114)
+. ..++.++..+.. .+.. .....|++++|||++.. .+. .+++... .|..
T Consensus 221 d~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~-~~~~~l~~~ll---~~~v 296 (1176)
T PRK09401 221 DKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPR-GNRVKLFRELL---GFEV 296 (1176)
T ss_pred hhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCcc-chHHHHhhccc---eEEe
Confidence 21 234444433211 0000 11267899999998742 121 1222110 0111
Q ss_pred cCC-cccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHH---HHHHHHHHHHHhhccccccccc
Q 000129 692 DNS-YRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKE---TAKTARAIRDTALENDTLGRFL 767 (2114)
Q Consensus 692 ~~~-~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~---~~~~a~~L~~~~~~~~~l~~~l 767 (2114)
... ...-.+.+.++... .+...+. . +.... +.++||||++++. +..++..|...++.
T Consensus 297 ~~~~~~~rnI~~~yi~~~-----~k~~~L~----~-ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~-------- 357 (1176)
T PRK09401 297 GSPVFYLRNIVDSYIVDE-----DSVEKLV----E-LVKRL-GDGGLIFVPSDKGKEYAEELAEYLEDLGIN-------- 357 (1176)
T ss_pred cCcccccCCceEEEEEcc-----cHHHHHH----H-HHHhc-CCCEEEEEecccChHHHHHHHHHHHHCCCc--------
Confidence 111 11112333333222 1111111 1 22222 4589999999887 99999998876533
Q ss_pred ccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEe----chHhhhhcCCCc-eEEE
Q 000129 768 KEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVS----TATLAWGVNLPA-HTVI 842 (2114)
Q Consensus 768 ~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVa----T~tla~GVdlP~-v~vV 842 (2114)
++..||+| +| .++.|++|+++|||| |++++||+|+|+ +++|
T Consensus 358 -----------------------------v~~~hg~l---~~--~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryV 403 (1176)
T PRK09401 358 -----------------------------AELAISGF---ER--KFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYA 403 (1176)
T ss_pred -----------------------------EEEEeCcH---HH--HHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEE
Confidence 45669999 22 349999999999999 689999999999 8999
Q ss_pred EecceeccCCCCccccCCHHHHHHhhcccCC
Q 000129 843 IKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2114)
Q Consensus 843 I~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2114)
|+ |+.|+.++.---...+.||+||+-+
T Consensus 404 I~----y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 404 IF----YGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred EE----eCCCCEEEeccccccCHHHHHHHHh
Confidence 99 6666533211123468999999863
No 165
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.94 E-value=7.3e-26 Score=260.06 Aligned_cols=329 Identities=19% Similarity=0.269 Sum_probs=231.0
Q ss_pred HHHHHhcCCCCC-CHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHH
Q 000129 1331 LYEALYQGFKHF-NPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409 (2114)
Q Consensus 1331 ~~~~l~~gf~~~-~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~ 1409 (2114)
.+..+|. +..| ++.|.+|+..+..++.+|.|+.|||+||++||.||.|- .++ ..|++.|..+|+..+...
T Consensus 10 aLKK~FG-h~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~------~~g--ITIV~SPLiALIkDQiDH 80 (641)
T KOG0352|consen 10 ALKKLFG-HKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALV------HGG--ITIVISPLIALIKDQIDH 80 (641)
T ss_pred HHHHHhC-chhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHH------hCC--eEEEehHHHHHHHHHHHH
Confidence 4566665 6655 79999999999999999999999999999999999883 244 889999999999999998
Q ss_pred HHHHhcCCCCcEEEEEcCCcccc--------hh-hccCCcEEEEChhhHHH-----HHhhhcccccccceeEEEeccccc
Q 000129 1410 WEIKFGQGLGMRVVELTGETAMD--------LK-LLEKGQIIISTPEKWDA-----LSRRWKQRKYVQQVSLFIIDELHL 1475 (2114)
Q Consensus 1410 ~~~~f~~~~g~~v~~l~G~~~~~--------~~-~l~~~~IIV~TPe~l~~-----l~r~~~~~~~l~~v~liIiDEaH~ 1475 (2114)
+. ++ .+.+..+.+..+.. ++ .-.+..+++.|||.... ++... ..-..+.++|+||||+
T Consensus 81 L~-~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L---~~r~~L~Y~vVDEAHC 152 (641)
T KOG0352|consen 81 LK-RL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGL---ANRDVLRYIVVDEAHC 152 (641)
T ss_pred HH-hc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHH---hhhceeeeEEechhhh
Confidence 87 33 34444444443322 11 11234899999998532 22221 1234578999999999
Q ss_pred ccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCC--hhHHHHHhcCCCC-ceeecCCCCCccCcEEEEecccccch
Q 000129 1476 IGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN--AKDLGEWIGATSH-GLFNFPPGVRPVPLEIHIQGVDITNF 1552 (2114)
Q Consensus 1476 l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n--~~dla~wl~~~~~-~~~~f~~~~rpv~l~~~~~~~~~~~~ 1552 (2114)
+..|+ +.+..-.-++-.+.+.+ .++..|+|+||... .+|+..-|..... .+|. .|.+|.. + -+
T Consensus 153 VSQWG-HDFRPDYL~LG~LRS~~-~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFk-TP~FR~N-L----------FY 218 (641)
T KOG0352|consen 153 VSQWG-HDFRPDYLTLGSLRSVC-PGVPWVALTATANAKVQEDIAFQLKLRNPVAIFK-TPTFRDN-L----------FY 218 (641)
T ss_pred Hhhhc-cccCcchhhhhhHHhhC-CCCceEEeecccChhHHHHHHHHHhhcCcHHhcc-Ccchhhh-h----------hH
Confidence 97654 33333333444454443 47889999999743 2467666654421 1222 2233321 0 00
Q ss_pred HHHHHhcCHHHHHHH----HHHhc-----------CCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccch
Q 000129 1553 EARMQAMTKPTFTAI----VQHAK-----------NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVE 1617 (2114)
Q Consensus 1553 ~~~~~~~~~~~~~~i----~~~l~-----------~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~ 1617 (2114)
...+.......+..+ ...+. ..+-.||||.||.+|+.+|-.|.
T Consensus 219 D~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~---------------------- 276 (641)
T KOG0352|consen 219 DNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLE---------------------- 276 (641)
T ss_pred HHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhh----------------------
Confidence 111111111111111 11111 12348999999999999996652
Q ss_pred hhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCC
Q 000129 1618 PFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTD 1697 (2114)
Q Consensus 1618 ~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~ 1697 (2114)
.-+.+...||+||...+|..|.+.+.+|++.||+||..+.+|||-|++++|| |++++
T Consensus 277 -------------~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFVi----------HW~~~ 333 (641)
T KOG0352|consen 277 -------------IAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVI----------HWSPS 333 (641)
T ss_pred -------------hcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEE----------ecCch
Confidence 2234556799999999999999999999999999999999999999999999 99999
Q ss_pred CCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHHHHH
Q 000129 1698 YPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFL 1737 (2114)
Q Consensus 1698 ~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~~~l 1737 (2114)
.+++-|.|-.|||||. +....|-+++...+++.+.-++
T Consensus 334 qn~AgYYQESGRAGRD--Gk~SyCRLYYsR~D~~~i~FLi 371 (641)
T KOG0352|consen 334 QNLAGYYQESGRAGRD--GKRSYCRLYYSRQDKNALNFLV 371 (641)
T ss_pred hhhHHHHHhccccccC--CCccceeeeecccchHHHHHHH
Confidence 9999999999999998 6789999999988887766444
No 166
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.94 E-value=3.1e-26 Score=303.16 Aligned_cols=328 Identities=23% Similarity=0.262 Sum_probs=246.9
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.|.+.+++-|.++|...+.+.+ ++|.+|||+||++||.+|++-. +...|+|.|..+|++.+...+
T Consensus 260 Fg~~~FR~~Q~eaI~~~l~Gkd-~fvlmpTG~GKSLCYQlPA~l~--------------~gitvVISPL~SLm~DQv~~L 324 (941)
T KOG0351|consen 260 FGHKGFRPNQLEAINATLSGKD-CFVLMPTGGGKSLCYQLPALLL--------------GGVTVVISPLISLMQDQVTHL 324 (941)
T ss_pred hccccCChhHHHHHHHHHcCCc-eEEEeecCCceeeEeecccccc--------------CCceEEeccHHHHHHHHHHhh
Confidence 5899999999999998777766 8999999999999999998643 126899999999999999887
Q ss_pred HHhhccCCcEEEEEeCCCccChhh-------hc--cceEEEcCHhHHH---HHHhccCCCcccccccEEEEeccccccc-
Q 000129 571 SNRLQMYDVKVRELSGDQTLTRQQ-------IE--ETQIIVTTPEKWD---IITRKSGDRTYTQLVKLLIIDEIHLLHD- 637 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~-------~~--~~~IiV~TPek~d---~l~r~~~~~~~l~~v~liIiDEaH~l~d- 637 (2114)
.. .+|....++|+.....+. .+ ..+|++.|||+.- .+.+..........+.++||||||++..
T Consensus 325 ~~----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqW 400 (941)
T KOG0351|consen 325 SK----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQW 400 (941)
T ss_pred hh----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhh
Confidence 43 488999999887654321 12 6799999999862 2222221111222389999999999854
Q ss_pred --CCchhHHHHHHHHHHHHhhccccccEEEEccccCC--hHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchh
Q 000129 638 --NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713 (2114)
Q Consensus 638 --~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn--~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~ 713 (2114)
+|+|.+..+-.- +...+.+.+|+||||... .+|+..-|+... ...+..++-+..+...+..-..+.
T Consensus 401 gHdFRp~Yk~l~~l-----~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~---~~~~~~sfnR~NL~yeV~~k~~~~-- 470 (941)
T KOG0351|consen 401 GHDFRPSYKRLGLL-----RIRFPGVPFIALTATATERVREDVIRSLGLRN---PELFKSSFNRPNLKYEVSPKTDKD-- 470 (941)
T ss_pred cccccHHHHHHHHH-----HhhCCCCCeEEeehhccHHHHHHHHHHhCCCC---cceecccCCCCCceEEEEeccCcc--
Confidence 566666544321 123445899999999743 678888887642 225566666666654443222111
Q ss_pred HHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhc
Q 000129 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (2114)
Q Consensus 714 ~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll 793 (2114)
. ...+...+........+||+|.+|++|+.++..|+..+..
T Consensus 471 ~-----~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~---------------------------------- 511 (941)
T KOG0351|consen 471 A-----LLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKS---------------------------------- 511 (941)
T ss_pred c-----hHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchh----------------------------------
Confidence 0 1112233444555779999999999999999999986633
Q ss_pred cCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCC
Q 000129 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2114)
Q Consensus 794 ~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2114)
.+++||||+..+|..|.+.|-.++++|+|||=++++|||.|+|+.||+ |+.++ |...|.|-+|||||
T Consensus 512 ---a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH----~~lPk------s~E~YYQE~GRAGR 578 (941)
T KOG0351|consen 512 ---AAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIH----YSLPK------SFEGYYQEAGRAGR 578 (941)
T ss_pred ---hHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEE----CCCch------hHHHHHHhccccCc
Confidence 345699999999999999999999999999999999999999999999 77666 78889999999999
Q ss_pred CCCCCceEEEEEcCCCcHHHHHHhhcCC
Q 000129 874 PQYDSYGEGIIITGHSELRYYLSLMNQQ 901 (2114)
Q Consensus 874 ~g~d~~G~~iil~~~~e~~~~~~ll~~~ 901 (2114)
.| ....|++++...+...+..++...
T Consensus 579 DG--~~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 579 DG--LPSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred CC--CcceeEEecchhHHHHHHHHHHcc
Confidence 98 568999999998877777665543
No 167
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.94 E-value=3.9e-25 Score=286.98 Aligned_cols=428 Identities=17% Similarity=0.160 Sum_probs=285.8
Q ss_pred HHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh-ccCC
Q 000129 500 QSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL-QMYD 578 (2114)
Q Consensus 500 Q~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~-~~~g 578 (2114)
+.+.+-.+++.+..++|+|.||||||+.....||....... ...++++..|+|--|..+++++.... ...|
T Consensus 177 ~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~--------~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g 248 (924)
T KOG0920|consen 177 MRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG--------AACNIICTQPRRISAISVAERVAKERGESLG 248 (924)
T ss_pred HHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC--------CCCeEEecCCchHHHHHHHHHHHHHhccccC
Confidence 44555556788888999999999999999999998865542 35689999999999999999887543 3345
Q ss_pred cEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhcc
Q 000129 579 VKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTK 658 (2114)
Q Consensus 579 i~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~ 658 (2114)
-.|+.-.+- ..+....+.+.+||.+ +++|.......+..+..||+||+|.=.- -...+-.++..+ -...
T Consensus 249 ~~VGYqvrl---~~~~s~~t~L~fcTtG---vLLr~L~~~~~l~~vthiivDEVHER~i-~~DflLi~lk~l----L~~~ 317 (924)
T KOG0920|consen 249 EEVGYQVRL---ESKRSRETRLLFCTTG---VLLRRLQSDPTLSGVTHIIVDEVHERSI-NTDFLLILLKDL----LPRN 317 (924)
T ss_pred CeeeEEEee---ecccCCceeEEEecHH---HHHHHhccCcccccCceeeeeeEEEccC-CcccHHHHHHHH----hhhC
Confidence 444433332 2222335899999999 5666665567889999999999996321 111232233333 2345
Q ss_pred ccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEE----------e-------eccCc----------
Q 000129 659 EHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI----------G-------IQVKK---------- 711 (2114)
Q Consensus 659 ~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~----------~-------~~~~~---------- 711 (2114)
++.|+|+||||+ |.+.+..|++.. ++....+...||. .+|. . .....
T Consensus 318 p~LkvILMSAT~-dae~fs~YF~~~---pvi~i~grtfpV~--~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (924)
T KOG0920|consen 318 PDLKVILMSATL-DAELFSDYFGGC---PVITIPGRTFPVK--EYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLW 391 (924)
T ss_pred CCceEEEeeeec-chHHHHHHhCCC---ceEeecCCCcchH--HHHHHHHHHHhcccccccccccccccCccccccchhc
Confidence 899999999998 678888888743 3333333333332 1110 0 00000
Q ss_pred -hhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhh
Q 000129 712 -PLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK 790 (2114)
Q Consensus 712 -~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~ 790 (2114)
..-.+ .+...+...+.+....+.+|||.++..++..+...|.......+. .
T Consensus 392 ~~~id~-~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~-~-------------------------- 443 (924)
T KOG0920|consen 392 EPEIDY-DLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADS-L-------------------------- 443 (924)
T ss_pred cccccH-HHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccc-c--------------------------
Confidence 00000 111112222333333689999999999999999888654322211 0
Q ss_pred hhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecc----eeccCCCCcc----ccCCHH
Q 000129 791 DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGT----QIYNPEKGAW----TELSPL 862 (2114)
Q Consensus 791 ~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~----~~yd~~~g~~----~~~s~~ 862 (2114)
..-+-..|+.|+..+++.|++....|..+|++||++++.+|.+|+|.+||+.. ..||+..+.. .++|.+
T Consensus 444 ---~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkA 520 (924)
T KOG0920|consen 444 ---KFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKA 520 (924)
T ss_pred ---ceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeecccc
Confidence 11255679999999999999999999999999999999999999999999863 5688876533 778999
Q ss_pred HHHHhhcccCCCCCCCceEEEEEcCCCcHHHHHHhhcCCCcccchhhHhhHHHHHHHHhhc-cccChHHHHHHHHhhHHH
Q 000129 863 DIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLG-TVQNAKEACNWIGYTYLY 941 (2114)
Q Consensus 863 ~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~~ll~~~~pies~l~~~l~d~l~~ei~~~-~i~~~~~~~~wl~~t~~~ 941 (2114)
...||.|||||. ..|.||-+++... |.+++. ..++.+.++..|- |+++. .+-...++..||+
T Consensus 521 na~QR~GRAGRv---~~G~cy~L~~~~~---~~~~~~-----~~q~PEilR~pL~-~l~L~iK~l~~~~~~~fLs----- 583 (924)
T KOG0920|consen 521 NAKQRRGRAGRV---RPGICYHLYTRSR---YEKLML-----AYQLPEILRTPLE-ELCLHIKVLEQGSIKAFLS----- 583 (924)
T ss_pred chHHhcccccCc---cCCeeEEeechhh---hhhccc-----ccCChHHHhChHH-HhhheeeeccCCCHHHHHH-----
Confidence 999999999997 5899999988654 333332 1223333332222 22221 1222222333332
Q ss_pred HhhccCCcccCCCcccccccchhhhhhHHHHHHHHHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHHHHhhcC
Q 000129 942 IRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLK 1021 (2114)
Q Consensus 942 ~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~al~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~ 1021 (2114)
++ ++.+..+.|..|+..|...|.+..++ .+|+||+.+|.+++++.-.++..-..-
T Consensus 584 -ka-------------------ldpP~~~~v~~a~~~L~~igaL~~~e-----~LT~LG~~la~lPvd~~igK~ll~g~i 638 (924)
T KOG0920|consen 584 -KA-------------------LDPPPADAVDLAIERLKQIGALDESE-----ELTPLGLHLASLPVDVRIGKLLLFGAI 638 (924)
T ss_pred -Hh-------------------cCCCChHHHHHHHHHHHHhccccCcc-----cchHHHHHHHhCCCccccchhheehhh
Confidence 21 22223356899999999999998553 899999999999999998888765444
Q ss_pred CCCC
Q 000129 1022 PTMG 1025 (2114)
Q Consensus 1022 ~~~~ 1025 (2114)
.+|-
T Consensus 639 f~cL 642 (924)
T KOG0920|consen 639 FGCL 642 (924)
T ss_pred cccc
Confidence 4443
No 168
>PRK13766 Hef nuclease; Provisional
Probab=99.94 E-value=7.7e-25 Score=301.64 Aligned_cols=325 Identities=20% Similarity=0.244 Sum_probs=220.9
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000129 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~ 1418 (2114)
.-.++++|.+++..++++ |++|++|||+|||++|.+++...+.. +++ ++|||+|+++|+.|+.+.+++.++ ..
T Consensus 13 ~~~~r~yQ~~~~~~~l~~--n~lv~~ptG~GKT~~a~~~i~~~l~~--~~~--~vLvl~Pt~~L~~Q~~~~~~~~~~-~~ 85 (773)
T PRK13766 13 TIEARLYQQLLAATALKK--NTLVVLPTGLGKTAIALLVIAERLHK--KGG--KVLILAPTKPLVEQHAEFFRKFLN-IP 85 (773)
T ss_pred cCCccHHHHHHHHHHhcC--CeEEEcCCCccHHHHHHHHHHHHHHh--CCC--eEEEEeCcHHHHHHHHHHHHHHhC-CC
Confidence 447899999999998875 79999999999999999999887743 445 999999999999999999986543 23
Q ss_pred CcEEEEEcCCcccch--hhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHh
Q 000129 1419 GMRVVELTGETAMDL--KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIAS 1496 (2114)
Q Consensus 1419 g~~v~~l~G~~~~~~--~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~ 1496 (2114)
+.++..++|+.+.+. ..+..++|+|+||+.+...+.. .+..+.++++||+||||++.+.. .+..+..+.+
T Consensus 86 ~~~v~~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~--~~~~~~~~~liVvDEaH~~~~~~--~~~~i~~~~~---- 157 (773)
T PRK13766 86 EEKIVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLIA--GRISLEDVSLLIFDEAHRAVGNY--AYVYIAERYH---- 157 (773)
T ss_pred CceEEEEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHc--CCCChhhCcEEEEECCccccccc--cHHHHHHHHH----
Confidence 558888999877652 3456789999999988655433 34467889999999999886443 2222333222
Q ss_pred hcCCCceEEEEcccCCCh-hH---HHHHhcCCCCceeecCCCC----Cc----cCcEEEEecccc---------------
Q 000129 1497 QVENKIRIVALSTSLANA-KD---LGEWIGATSHGLFNFPPGV----RP----VPLEIHIQGVDI--------------- 1549 (2114)
Q Consensus 1497 ~~~~~~riV~lSATl~n~-~d---la~wl~~~~~~~~~f~~~~----rp----v~l~~~~~~~~~--------------- 1549 (2114)
......++++||||+... .. +...++... +.+.+.. .+ ..+.......+.
T Consensus 158 ~~~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~---v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~ 234 (773)
T PRK13766 158 EDAKNPLVLGLTASPGSDEEKIKEVCENLGIEH---VEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKD 234 (773)
T ss_pred hcCCCCEEEEEEcCCCCCHHHHHHHHHhCCceE---EEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHH
Confidence 223467899999998532 23 333333221 1111111 00 000000000000
Q ss_pred --------------------cchH-------HH------------------------------------------HHh--
Q 000129 1550 --------------------TNFE-------AR------------------------------------------MQA-- 1558 (2114)
Q Consensus 1550 --------------------~~~~-------~~------------------------------------------~~~-- 1558 (2114)
.... .. ...
T Consensus 235 ~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~ 314 (773)
T PRK13766 235 RLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEA 314 (773)
T ss_pred HHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhc
Confidence 0000 00 000
Q ss_pred -----------------------------cCHHHHHHHHHHh------cCCCCEEEEeCChHHHHHHHHHHHHhhccCCc
Q 000129 1559 -----------------------------MTKPTFTAIVQHA------KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGD 1603 (2114)
Q Consensus 1559 -----------------------------~~~~~~~~i~~~l------~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~ 1603 (2114)
...+.+..+...+ ..++++||||++++.|..++..|...
T Consensus 315 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~------ 388 (773)
T PRK13766 315 RSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKE------ 388 (773)
T ss_pred cccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhC------
Confidence 0000111111111 35678999999999998888777321
Q ss_pred ccccccCCCcccchhhHhhhhHHHHHHHhccceEee--------cCCCCHHHHHHHHHHHhcCCceEEEecCccccccCC
Q 000129 1604 QKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYL--------HEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPL 1675 (2114)
Q Consensus 1604 ~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~--------H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdi 1675 (2114)
+..+..+ |++|++.+|..+++.|++|.++|||||+++++|+|+
T Consensus 389 -----------------------------~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi 439 (773)
T PRK13766 389 -----------------------------GIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDI 439 (773)
T ss_pred -----------------------------CCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCc
Confidence 1112233 456999999999999999999999999999999999
Q ss_pred CCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCc
Q 000129 1676 TAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1676 p~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~ 1729 (2114)
|.+++|| +|+.+.+...|+||+||+||. ..|.+++++....
T Consensus 440 ~~~~~VI----------~yd~~~s~~r~iQR~GR~gR~---~~~~v~~l~~~~t 480 (773)
T PRK13766 440 PSVDLVI----------FYEPVPSEIRSIQRKGRTGRQ---EEGRVVVLIAKGT 480 (773)
T ss_pred ccCCEEE----------EeCCCCCHHHHHHHhcccCcC---CCCEEEEEEeCCC
Confidence 9999999 788888999999999999995 4688998887654
No 169
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=3.7e-25 Score=286.49 Aligned_cols=362 Identities=15% Similarity=0.183 Sum_probs=219.6
Q ss_pred ccCCCCCcccccCcceEEecCCCCCCCCCCCCCccccCCCChhhHhhcCCCCCCCHHHHHHHHHHHcCC--CcEEEEccC
Q 000129 443 CDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSA--DNILLCAPT 520 (2114)
Q Consensus 443 ~~lp~~s~~~~~~~~eei~vp~~~~~~~~~~~~l~~i~~lp~~~~~~f~g~~~l~~iQ~~~i~~~l~~~--~nvlv~APT 520 (2114)
+.+++......++..-++.+|......+..... -..+|-.+ ..-..|+|+|.+++..++..+ .+.++++||
T Consensus 210 f~i~~~~~~~~k~~~~~~~~p~~~~~~f~~~~~---~~~~~i~L----~~~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPt 282 (732)
T TIGR00603 210 FEIDQEQVEEVKKRCIELDYPLLEEYDFRNDTV---NPDLNIDL----KPTTQIRPYQEKSLSKMFGNGRARSGIIVLPC 282 (732)
T ss_pred EEECHHHHHHHHHHHHHcCCchhhhhhhccccc---CCCCCccc----ccCCCcCHHHHHHHHHHHhcCCCCCcEEEeCC
Confidence 555555555555555566777644332221110 00111111 112478999999999988654 368999999
Q ss_pred CCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhhhccceE
Q 000129 521 GAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQI 600 (2114)
Q Consensus 521 GsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~I 600 (2114)
|+|||++++.++.. +. .++|||+|+..|+.|+.++|.+++......+..++|+.... ......|
T Consensus 283 GaGKTlvai~aa~~-l~-------------k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~tg~~k~~--~~~~~~V 346 (732)
T TIGR00603 283 GAGKSLVGVTAACT-VK-------------KSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRFTSDAKER--FHGEAGV 346 (732)
T ss_pred CCChHHHHHHHHHH-hC-------------CCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEEecCcccc--cccCCcE
Confidence 99999999866543 21 15999999999999999999987644456788888864321 1234789
Q ss_pred EEcCHhHHHHHHhccCC----Cccc--ccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEccccCChH
Q 000129 601 IVTTPEKWDIITRKSGD----RTYT--QLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYE 674 (2114)
Q Consensus 601 iV~TPek~d~l~r~~~~----~~~l--~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~ 674 (2114)
+|+|+..+....++... ...+ ...++||+||||++. .+.+..++..+ . ....+|||||+...+
T Consensus 347 vVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lp---A~~fr~il~~l-------~-a~~RLGLTATP~ReD 415 (732)
T TIGR00603 347 VVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVP---AAMFRRVLTIV-------Q-AHCKLGLTATLVRED 415 (732)
T ss_pred EEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccccc---HHHHHHHHHhc-------C-cCcEEEEeecCcccC
Confidence 99999864321111100 0112 357899999999985 23333333222 2 334699999965322
Q ss_pred ----HHHHHHhccccCceEee-------cCCcccccceeEEEeeccC----------chhHHHHHhhHHHHHH---HHH-
Q 000129 675 ----DVALFLRVNLEKGLFYF-------DNSYRPVPLSQQYIGIQVK----------KPLQRFQLMNDLCYEK---VVA- 729 (2114)
Q Consensus 675 ----dva~~l~~~~~~~~~~f-------~~~~rpv~l~~~~~~~~~~----------~~~~~~~~~~~~~~~~---i~~- 729 (2114)
++...++- .++.. .+..-|+......+..+.. .....+..++..-+.. +..
T Consensus 416 ~~~~~L~~LiGP----~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~~~~~Li~~ 491 (732)
T TIGR00603 416 DKITDLNFLIGP----KLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFRACQFLIRF 491 (732)
T ss_pred CchhhhhhhcCC----eeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHHHHHHHHHH
Confidence 12111111 11111 0001111111111111100 0001112232221111 222
Q ss_pred H-hCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHH
Q 000129 730 V-AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGD 808 (2114)
Q Consensus 730 ~-~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~ 808 (2114)
+ ..+.++||||.+...+..++..| |+.+.||+++..+
T Consensus 492 he~~g~kiLVF~~~~~~l~~~a~~L------------------------------------------~~~~I~G~ts~~E 529 (732)
T TIGR00603 492 HEQRGDKIIVFSDNVFALKEYAIKL------------------------------------------GKPFIYGPTSQQE 529 (732)
T ss_pred HhhcCCeEEEEeCCHHHHHHHHHHc------------------------------------------CCceEECCCCHHH
Confidence 2 24679999999988777776654 1234599999999
Q ss_pred HHHHHHHHhCC-CceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCc-----eEE
Q 000129 809 RQLVEDLFGDG-HVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSY-----GEG 882 (2114)
Q Consensus 809 R~~v~~~F~~g-~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~-----G~~ 882 (2114)
|..+++.|++| .+++||+|.++.+|||+|++++||+ ++++.| |..+|+||+||++|++.++. ...
T Consensus 530 R~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~----~s~~~g-----S~~q~iQRlGRilR~~~~~~~~~~~A~f 600 (732)
T TIGR00603 530 RMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQ----ISSHYG-----SRRQEAQRLGRILRAKKGSDAEEYNAFF 600 (732)
T ss_pred HHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEE----eCCCCC-----CHHHHHHHhcccccCCCCCccccccceE
Confidence 99999999875 8899999999999999999999998 665433 78899999999999975433 223
Q ss_pred EEEcCCCcHHH
Q 000129 883 IIITGHSELRY 893 (2114)
Q Consensus 883 iil~~~~e~~~ 893 (2114)
|.+++.+..+.
T Consensus 601 Y~lVs~dT~E~ 611 (732)
T TIGR00603 601 YSLVSKDTQEM 611 (732)
T ss_pred EEEecCCchHH
Confidence 66666655443
No 170
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=4.9e-26 Score=292.61 Aligned_cols=346 Identities=20% Similarity=0.202 Sum_probs=224.8
Q ss_pred EEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh
Q 000129 515 LLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ 594 (2114)
Q Consensus 515 lv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~ 594 (2114)
|+.||||||||.+|+.++...+..+ .+++|++|+++|+.|++++|++.| |.++..++|+.+...+.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g-----------~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~ 66 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALG-----------KSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKL 66 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcC-----------CeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHH
Confidence 5789999999999987776666432 379999999999999999999876 56788999887654321
Q ss_pred -------hccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc--CCchhHHHHHHHHHHHHhhccccccEEE
Q 000129 595 -------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD--NRGPVLESIVARTVRQIETTKEHIRLVG 665 (2114)
Q Consensus 595 -------~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d--~rg~~le~iv~rl~~~~~~~~~~~riv~ 665 (2114)
....+|+|+|+..+ ...++++++|||||+|.... ..++.+.. |-+........+.++|+
T Consensus 67 ~~~~~~~~g~~~IVVGTrsal---------f~p~~~l~lIIVDEeh~~sykq~~~p~y~a---r~~a~~ra~~~~~~vil 134 (505)
T TIGR00595 67 QAWRKVKNGEILVVIGTRSAL---------FLPFKNLGLIIVDEEHDSSYKQEEGPRYHA---RDVAVYRAKKFNCPVVL 134 (505)
T ss_pred HHHHHHHcCCCCEEECChHHH---------cCcccCCCEEEEECCCccccccccCCCCcH---HHHHHHHHHhcCCCEEE
Confidence 23679999999742 13467899999999998653 33444321 11111122346889999
Q ss_pred EccccCChHHHHHHHhccccCceEeecCCcccccc-eeEEEeeccCchhHHHHHhhHHHHHHHHHHhC-CCeEEEEecCh
Q 000129 666 LSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPL-SQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAG-KHQVLIFVHSR 743 (2114)
Q Consensus 666 lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~vLVFv~sr 743 (2114)
+||| |..+.......... ........+...++ ...++...... ....+...+++.+.+... ++|+|||+|+|
T Consensus 135 ~SAT-Psles~~~~~~g~~--~~~~l~~r~~~~~~p~v~vid~~~~~---~~~~ls~~l~~~i~~~l~~g~qvLvflnrr 208 (505)
T TIGR00595 135 GSAT-PSLESYHNAKQKAY--RLLVLTRRVSGRKPPEVKLIDMRKEP---RQSFLSPELITAIEQTLAAGEQSILFLNRR 208 (505)
T ss_pred EeCC-CCHHHHHHHhcCCe--EEeechhhhcCCCCCeEEEEeccccc---ccCCccHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 9999 77666655543211 11111111111111 12222221111 011234455666665554 67999999999
Q ss_pred HHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhh----------cccCc--------------chhhhhcc-CceE
Q 000129 744 KETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHT----------DMVKS--------------NDLKDLLP-YGFA 798 (2114)
Q Consensus 744 ~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~----------~~~~~--------------~~L~~ll~-~gv~ 798 (2114)
..+..+...=+.....+..++..+..+.......|..| ..|.. +.|+..++ ..|.
T Consensus 209 Gya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~ 288 (505)
T TIGR00595 209 GYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIA 288 (505)
T ss_pred cCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEE
Confidence 88766555545444444444433333222222222222 22221 34555554 5788
Q ss_pred EecCCCCHHHH--HHHHHHHhCCCceEEEechHhhhhcCCCceEEE--EecceeccCCCCccccCCHHHHHHhhcccCCC
Q 000129 799 IHHAGMTRGDR--QLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVI--IKGTQIYNPEKGAWTELSPLDIMQMLGRAGRP 874 (2114)
Q Consensus 799 ~hHagl~~~~R--~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vV--I~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~ 874 (2114)
..|+.++...+ +.+++.|++|+++|||+|+++++|+|+|++++| ++.+...+.+..+..+-..+.|+|++|||||.
T Consensus 289 ~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~ 368 (505)
T TIGR00595 289 RIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRA 368 (505)
T ss_pred EEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCC
Confidence 99999987766 889999999999999999999999999999976 46555444444444555778999999999996
Q ss_pred CCCCceEEEEEcCCCcHHHH
Q 000129 875 QYDSYGEGIIITGHSELRYY 894 (2114)
Q Consensus 875 g~d~~G~~iil~~~~e~~~~ 894 (2114)
+ ..|.+++.+..++...+
T Consensus 369 ~--~~g~viiqt~~p~~~~~ 386 (505)
T TIGR00595 369 E--DPGQVIIQTYNPNHPAI 386 (505)
T ss_pred C--CCCEEEEEeCCCCCHHH
Confidence 5 67999999877664433
No 171
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=9.3e-26 Score=275.49 Aligned_cols=453 Identities=17% Similarity=0.190 Sum_probs=280.4
Q ss_pred HHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEe
Q 000129 506 SALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELS 585 (2114)
Q Consensus 506 ~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~ 585 (2114)
.+++.+..+||||.||||||+.....+...-.... .. .++..|-+..|+|--|..+++++..-++.+|-.|+...
T Consensus 266 EaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~----~~-~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqI 340 (1172)
T KOG0926|consen 266 EAINENPVVIICGETGSGKTTQVPQFLYEAGFASE----QS-SSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQI 340 (1172)
T ss_pred HHhhcCCeEEEecCCCCCccccchHHHHHcccCCc----cC-CCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEE
Confidence 45566778999999999999987666554422111 01 11336788999999999999998877766665665432
Q ss_pred CCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccc------
Q 000129 586 GDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKE------ 659 (2114)
Q Consensus 586 Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~------ 659 (2114)
.++......+.|.++|.+ +|+|.......+..++.|||||||.-. -....+-.+++|+.+.......
T Consensus 341 ---Rfd~ti~e~T~IkFMTDG---VLLrEi~~DflL~kYSvIIlDEAHERS-vnTDILiGmLSRiV~LR~k~~ke~~~~k 413 (1172)
T KOG0926|consen 341 ---RFDGTIGEDTSIKFMTDG---VLLREIENDFLLTKYSVIILDEAHERS-VNTDILIGMLSRIVPLRQKYYKEQCQIK 413 (1172)
T ss_pred ---EeccccCCCceeEEecch---HHHHHHHHhHhhhhceeEEechhhhcc-chHHHHHHHHHHHHHHHHHHhhhhcccC
Confidence 122223346899999999 777777666788999999999999521 1234445556666655544444
Q ss_pred cccEEEEccccCChHHHHHHHhc---c-ccCceEeecCCcccccceeEEEeeccCchhHHHH-HhhHHHHHHHHHHhCCC
Q 000129 660 HIRLVGLSATLPNYEDVALFLRV---N-LEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQ-LMNDLCYEKVVAVAGKH 734 (2114)
Q Consensus 660 ~~riv~lSATlpn~~dva~~l~~---~-~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~ 734 (2114)
+.++|.|||||- +.+|-.. . ...++.-.+.. ..|+..||-.-+ +...+. +..+.| .|++.++.+
T Consensus 414 pLKLIIMSATLR----VsDFtenk~LFpi~pPlikVdAR--QfPVsIHF~krT---~~DYi~eAfrKtc--~IH~kLP~G 482 (1172)
T KOG0926|consen 414 PLKLIIMSATLR----VSDFTENKRLFPIPPPLIKVDAR--QFPVSIHFNKRT---PDDYIAEAFRKTC--KIHKKLPPG 482 (1172)
T ss_pred ceeEEEEeeeEE----ecccccCceecCCCCceeeeecc--cCceEEEeccCC---CchHHHHHHHHHH--HHhhcCCCC
Confidence 789999999984 3333311 1 11223334433 333444443222 222111 112221 345566688
Q ss_pred eEEEEecChHHHHHHHHHHHHHhhccc------ccccccccCch--------------hH-------HH-----HHh---
Q 000129 735 QVLIFVHSRKETAKTARAIRDTALEND------TLGRFLKEDSV--------------SR-------EI-----LQS--- 779 (2114)
Q Consensus 735 ~vLVFv~sr~~~~~~a~~L~~~~~~~~------~l~~~l~~~~~--------------~~-------~~-----l~~--- 779 (2114)
.+|||+....++..+++.|+......- ......++... .. +. ...
T Consensus 483 ~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~ 562 (1172)
T KOG0926|consen 483 GILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFA 562 (1172)
T ss_pred cEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccch
Confidence 999999999999999999998743110 00000000000 00 00 000
Q ss_pred -----------hhcccC---cchhhh-------------hccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhh
Q 000129 780 -----------HTDMVK---SNDLKD-------------LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAW 832 (2114)
Q Consensus 780 -----------~~~~~~---~~~L~~-------------ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~ 832 (2114)
+.+... .....+ .-+.-|..+++-|+.+++..|++.-..|..-++|||++++.
T Consensus 563 ~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAET 642 (1172)
T KOG0926|consen 563 SLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAET 642 (1172)
T ss_pred hhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhc
Confidence 000000 000100 11233667899999999999999999999999999999999
Q ss_pred hcCCCceEEEEec----ceeccCCCCcc----ccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcHHHHHHhhcCCCcc
Q 000129 833 GVNLPAHTVIIKG----TQIYNPEKGAW----TELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPI 904 (2114)
Q Consensus 833 GVdlP~v~vVI~~----~~~yd~~~g~~----~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~~ll~~~~pi 904 (2114)
.+.+|++.+||++ ...||..+|.. .++|.++.-||+|||||.| .|+||.+++..-.+. .
T Consensus 643 SLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg---pGHcYRLYSSAVf~~-------~--- 709 (1172)
T KOG0926|consen 643 SLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG---PGHCYRLYSSAVFSN-------D--- 709 (1172)
T ss_pred ccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC---CCceeehhhhHHhhc-------c---
Confidence 9999999999996 45688877732 6789999999999999985 899999987632210 0
Q ss_pred cchhhHhhHHHHHHHHhhccccChHHHHHHHHhhHHHHhhccCCcccCCCcccccccchhhhhhHHHHHHHHHHHhHCCC
Q 000129 905 ESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNL 984 (2114)
Q Consensus 905 es~l~~~l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~al~~L~~~~~ 984 (2114)
+.++-..||....+. +.+ +..+-+.-+..-+++.. +.|. ...++.|.+.|...|+
T Consensus 710 -------Fe~fS~PEIlk~Pve---~lv-------LqMKsMnI~kVvnFPFP---tpPd-----~~~L~~Aer~L~~LgA 764 (1172)
T KOG0926|consen 710 -------FEEFSLPEILKKPVE---SLV-------LQMKSMNIDKVVNFPFP---TPPD-----RSALEKAERRLKALGA 764 (1172)
T ss_pred -------hhhhccHHHhhCcHH---HHH-------HHHHhcCccceecCCCC---CCcc-----HHHHHHHHHHHHHhcc
Confidence 111111122211111 111 01111111222222211 1111 1346889999999999
Q ss_pred cccccCCCccccChhHHHHhhcccccccHHHHHhhcCCCC
Q 000129 985 VKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTM 1024 (2114)
Q Consensus 985 i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~ 1024 (2114)
++.+ | .+|+||+.||+|+++|+-.+++.-+....+
T Consensus 765 Ld~~---g--~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~~ 799 (1172)
T KOG0926|consen 765 LDSN---G--GLTKLGKAMSLFPLSPRFSKMLATSDQHNL 799 (1172)
T ss_pred cccc---C--CcccccchhcccccChhHHHHHHHHHhhcc
Confidence 9853 3 789999999999999999998876655444
No 172
>PRK13766 Hef nuclease; Provisional
Probab=99.94 E-value=1.4e-24 Score=299.10 Aligned_cols=333 Identities=23% Similarity=0.334 Sum_probs=218.2
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000129 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2114)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (2114)
.-+++++|.+++..++.+ |+|+++|||+|||.+|.+++...+.. .+.++|||+|+++|+.|+.+.+++
T Consensus 13 ~~~~r~yQ~~~~~~~l~~--n~lv~~ptG~GKT~~a~~~i~~~l~~----------~~~~vLvl~Pt~~L~~Q~~~~~~~ 80 (773)
T PRK13766 13 TIEARLYQQLLAATALKK--NTLVVLPTGLGKTAIALLVIAERLHK----------KGGKVLILAPTKPLVEQHAEFFRK 80 (773)
T ss_pred cCCccHHHHHHHHHHhcC--CeEEEcCCCccHHHHHHHHHHHHHHh----------CCCeEEEEeCcHHHHHHHHHHHHH
Confidence 447899999999988876 79999999999999999999887732 123899999999999999999998
Q ss_pred hhccCCcEEEEEeCCCccChh--hhccceEEEcCHhHH--HHHHhccCCCcccccccEEEEecccccccCCchhHHHHHH
Q 000129 573 RLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKW--DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVA 648 (2114)
Q Consensus 573 ~~~~~gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPek~--d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~ 648 (2114)
.+...+.++..++|+...... .....+|+|+||+.+ +.+.. ...+.++++|||||||++....+ ...+..
T Consensus 81 ~~~~~~~~v~~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~----~~~~~~~~liVvDEaH~~~~~~~--~~~i~~ 154 (773)
T PRK13766 81 FLNIPEEKIVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLIAG----RISLEDVSLLIFDEAHRAVGNYA--YVYIAE 154 (773)
T ss_pred HhCCCCceEEEEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcC----CCChhhCcEEEEECCcccccccc--HHHHHH
Confidence 776445688899998765432 245789999999986 32222 24567899999999999864322 222222
Q ss_pred HHHHHHhhccccccEEEEccccC-ChHHHHHHHhccccCceEeecCCccc----c--cceeEEEeeccCchh--------
Q 000129 649 RTVRQIETTKEHIRLVGLSATLP-NYEDVALFLRVNLEKGLFYFDNSYRP----V--PLSQQYIGIQVKKPL-------- 713 (2114)
Q Consensus 649 rl~~~~~~~~~~~riv~lSATlp-n~~dva~~l~~~~~~~~~~f~~~~rp----v--~l~~~~~~~~~~~~~-------- 713 (2114)
+. .......+++|||||.. +.+.+...+..-... .+.+.+.+.+ . +....++.+......
T Consensus 155 ~~----~~~~~~~~il~lTaTP~~~~~~i~~~~~~L~i~-~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~ 229 (773)
T PRK13766 155 RY----HEDAKNPLVLGLTASPGSDEEKIKEVCENLGIE-HVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLN 229 (773)
T ss_pred HH----HhcCCCCEEEEEEcCCCCCHHHHHHHHHhCCce-EEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHH
Confidence 22 22344677999999943 233333333211000 0111111000 0 000000000000000
Q ss_pred --------------------------------HHH---------------------------------------------
Q 000129 714 --------------------------------QRF--------------------------------------------- 716 (2114)
Q Consensus 714 --------------------------------~~~--------------------------------------------- 716 (2114)
..+
T Consensus 230 ~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~ 309 (773)
T PRK13766 230 EALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLER 309 (773)
T ss_pred HHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 000
Q ss_pred ------------------------HHh---h---------HHHHHHHHHH---hCCCeEEEEecChHHHHHHHHHHHHHh
Q 000129 717 ------------------------QLM---N---------DLCYEKVVAV---AGKHQVLIFVHSRKETAKTARAIRDTA 757 (2114)
Q Consensus 717 ------------------------~~~---~---------~~~~~~i~~~---~~~~~vLVFv~sr~~~~~~a~~L~~~~ 757 (2114)
..+ . +.+.+.+.+. .+++++||||++++.|..++..|...+
T Consensus 310 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~ 389 (773)
T PRK13766 310 LREEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEG 389 (773)
T ss_pred HHhhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCC
Confidence 000 0 0000111111 346799999999999999999996654
Q ss_pred hcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCC
Q 000129 758 LENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLP 837 (2114)
Q Consensus 758 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP 837 (2114)
.....+ . ..+...-|+||++.+|..+++.|++|.++|||||+++++|+|+|
T Consensus 390 ~~~~~~---~--------------------------g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~ 440 (773)
T PRK13766 390 IKAVRF---V--------------------------GQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIP 440 (773)
T ss_pred CceEEE---E--------------------------ccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcc
Confidence 332111 0 00000016789999999999999999999999999999999999
Q ss_pred ceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCc
Q 000129 838 AHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890 (2114)
Q Consensus 838 ~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e 890 (2114)
++++||+ ||++. +...|+||+||+||.| .|.+++++..+.
T Consensus 441 ~~~~VI~----yd~~~------s~~r~iQR~GR~gR~~---~~~v~~l~~~~t 480 (773)
T PRK13766 441 SVDLVIF----YEPVP------SEIRSIQRKGRTGRQE---EGRVVVLIAKGT 480 (773)
T ss_pred cCCEEEE----eCCCC------CHHHHHHHhcccCcCC---CCEEEEEEeCCC
Confidence 9999998 77654 7788999999999965 488888877643
No 173
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=4.8e-25 Score=282.47 Aligned_cols=319 Identities=16% Similarity=0.136 Sum_probs=214.0
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.|+++|..+++.++.+. |..+.||+|||++|.+|++.....+ ..+++++|++.||.|.++.+..++
T Consensus 103 ~p~~VQ~~~~~~ll~G~---Iae~~TGeGKTla~~lp~~~~al~G-----------~~v~VvTptreLA~qdae~~~~l~ 168 (656)
T PRK12898 103 RHFDVQLMGGLALLSGR---LAEMQTGEGKTLTATLPAGTAALAG-----------LPVHVITVNDYLAERDAELMRPLY 168 (656)
T ss_pred CCChHHHHHHHHHhCCC---eeeeeCCCCcHHHHHHHHHHHhhcC-----------CeEEEEcCcHHHHHHHHHHHHHHH
Confidence 68899999999988775 9999999999999999999876543 479999999999999999999999
Q ss_pred ccCCcEEEEEeCCCccChh-hhccceEEEcCHhHH--HHHHhcc----------------------CCCcccccccEEEE
Q 000129 575 QMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW--DIITRKS----------------------GDRTYTQLVKLLII 629 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~-~~~~~~IiV~TPek~--d~l~r~~----------------------~~~~~l~~v~liIi 629 (2114)
..+|++|+.++|+.+...+ ....++|+|+|...+ |.|.-+. ........+.+.||
T Consensus 169 ~~lGlsv~~i~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIv 248 (656)
T PRK12898 169 EALGLTVGCVVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIV 248 (656)
T ss_pred hhcCCEEEEEeCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEe
Confidence 9999999999999764332 245889999999875 5443321 11123456789999
Q ss_pred ecccccc-cC-C----------chhHHHHHHHHHHHHhhc----------------------------------------
Q 000129 630 DEIHLLH-DN-R----------GPVLESIVARTVRQIETT---------------------------------------- 657 (2114)
Q Consensus 630 DEaH~l~-d~-r----------g~~le~iv~rl~~~~~~~---------------------------------------- 657 (2114)
||+|.++ |+ + ......+...........
T Consensus 249 DEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~ 328 (656)
T PRK12898 249 DEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAV 328 (656)
T ss_pred ecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccch
Confidence 9999652 21 1 110000000000000000
Q ss_pred -----------------------------------------------------------------------------ccc
Q 000129 658 -----------------------------------------------------------------------------KEH 660 (2114)
Q Consensus 658 -----------------------------------------------------------------------------~~~ 660 (2114)
..-
T Consensus 329 ~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y 408 (656)
T PRK12898 329 RREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRY 408 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhh
Confidence 001
Q ss_pred ccEEEEccccCCh-HHHHHHHhccccCceEeecCCcccccce--eEEEeeccCchhHHHHHhhHHHHHHHHHH-hCCCeE
Q 000129 661 IRLVGLSATLPNY-EDVALFLRVNLEKGLFYFDNSYRPVPLS--QQYIGIQVKKPLQRFQLMNDLCYEKVVAV-AGKHQV 736 (2114)
Q Consensus 661 ~riv~lSATlpn~-~dva~~l~~~~~~~~~~f~~~~rpv~l~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~v 736 (2114)
.++.|||||++.. +++..+.+.+ . ...+..+|..-. ..++..+ ...+...+.+. +... ..+.++
T Consensus 409 ~kl~GmTGTa~~~~~El~~~y~l~----v-v~IPt~kp~~r~~~~~~v~~t---~~~K~~aL~~~----i~~~~~~~~pv 476 (656)
T PRK12898 409 LRLAGMTGTAREVAGELWSVYGLP----V-VRIPTNRPSQRRHLPDEVFLT---AAAKWAAVAAR----VRELHAQGRPV 476 (656)
T ss_pred HHHhcccCcChHHHHHHHHHHCCC----e-EEeCCCCCccceecCCEEEeC---HHHHHHHHHHH----HHHHHhcCCCE
Confidence 1678888887642 2344444332 1 223333443211 1111111 22233333322 2222 235789
Q ss_pred EEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHH
Q 000129 737 LIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLF 816 (2114)
Q Consensus 737 LVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F 816 (2114)
||||+|++.++.++..|...++. +..+||.+...++.. ..|
T Consensus 477 LIft~t~~~se~L~~~L~~~gi~-------------------------------------~~~Lhg~~~~rE~~i--i~~ 517 (656)
T PRK12898 477 LVGTRSVAASERLSALLREAGLP-------------------------------------HQVLNAKQDAEEAAI--VAR 517 (656)
T ss_pred EEEeCcHHHHHHHHHHHHHCCCC-------------------------------------EEEeeCCcHHHHHHH--HHH
Confidence 99999999999999999876543 345699876555544 455
Q ss_pred hCCCceEEEechHhhhhcCCC---ceE-----EEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCC
Q 000129 817 GDGHVQVLVSTATLAWGVNLP---AHT-----VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2114)
Q Consensus 817 ~~g~i~VLVaT~tla~GVdlP---~v~-----vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2114)
+.+..+|+|||++++||+|+| ++. +||+ |+.+. |...|.||+|||||.| .+|.++.+.+.
T Consensus 518 ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~----~d~P~------s~r~y~hr~GRTGRqG--~~G~s~~~is~ 585 (656)
T PRK12898 518 AGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVIL----TERHD------SARIDRQLAGRCGRQG--DPGSYEAILSL 585 (656)
T ss_pred cCCCCcEEEEccchhcccCcCCccchhhcCCCEEEE----cCCCC------CHHHHHHhcccccCCC--CCeEEEEEech
Confidence 555567999999999999999 665 8998 66655 6778999999999987 78999999886
Q ss_pred Cc
Q 000129 889 SE 890 (2114)
Q Consensus 889 ~e 890 (2114)
.+
T Consensus 586 eD 587 (656)
T PRK12898 586 ED 587 (656)
T ss_pred hH
Confidence 44
No 174
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=5.6e-25 Score=256.76 Aligned_cols=440 Identities=17% Similarity=0.190 Sum_probs=292.2
Q ss_pred HHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCC
Q 000129 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYD 578 (2114)
Q Consensus 499 iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~g 578 (2114)
-|++-|-..+..+.-++++|.||||||.......+.....+. ..+.+..|.|--|.+++.++.. .++
T Consensus 50 ~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~----------~~v~CTQprrvaamsva~RVad---EMD 116 (699)
T KOG0925|consen 50 EQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL----------TGVACTQPRRVAAMSVAQRVAD---EMD 116 (699)
T ss_pred HhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc----------cceeecCchHHHHHHHHHHHHH---Hhc
Confidence 366777788888888999999999999987777766655442 2489999999999999988876 456
Q ss_pred cEEEEEeCC-CccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhc
Q 000129 579 VKVRELSGD-QTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETT 657 (2114)
Q Consensus 579 i~v~~l~Gd-~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~ 657 (2114)
+..+.-.|- ..+++....++-+-+||.+ ++.|.......+..+++||+||||. +.....++.-+++.+...
T Consensus 117 v~lG~EVGysIrfEdC~~~~T~Lky~tDg---mLlrEams~p~l~~y~viiLDeahE-----RtlATDiLmGllk~v~~~ 188 (699)
T KOG0925|consen 117 VTLGEEVGYSIRFEDCTSPNTLLKYCTDG---MLLREAMSDPLLGRYGVIILDEAHE-----RTLATDILMGLLKEVVRN 188 (699)
T ss_pred cccchhccccccccccCChhHHHHHhcch---HHHHHHhhCcccccccEEEechhhh-----hhHHHHHHHHHHHHHHhh
Confidence 667666663 3333333334445566666 6778777778899999999999995 334445555555555555
Q ss_pred cccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEE
Q 000129 658 KEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVL 737 (2114)
Q Consensus 658 ~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vL 737 (2114)
+++.++|.+|||+ ....+..|.+.. ++....+ ..|+.+ . +........+.+....+++.. .....+.+|
T Consensus 189 rpdLk~vvmSatl-~a~Kfq~yf~n~---Pll~vpg-~~PvEi--~---Yt~e~erDylEaairtV~qih-~~ee~GDil 257 (699)
T KOG0925|consen 189 RPDLKLVVMSATL-DAEKFQRYFGNA---PLLAVPG-THPVEI--F---YTPEPERDYLEAAIRTVLQIH-MCEEPGDIL 257 (699)
T ss_pred CCCceEEEeeccc-chHHHHHHhCCC---CeeecCC-CCceEE--E---ecCCCChhHHHHHHHHHHHHH-hccCCCCEE
Confidence 6899999999997 567777777643 3444444 445543 1 222222344444444444432 223378999
Q ss_pred EEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHh
Q 000129 738 IFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFG 817 (2114)
Q Consensus 738 VFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~ 817 (2114)
||..+..+.+..++.+...+-.-. .+..+..|..+| +.++..+++...
T Consensus 258 vFLtgeeeIe~aC~~i~re~~~L~----------------------------~~~g~l~v~PLy----P~~qq~iFep~p 305 (699)
T KOG0925|consen 258 VFLTGEEEIEDACRKISREVDNLG----------------------------PQVGPLKVVPLY----PAQQQRIFEPAP 305 (699)
T ss_pred EEecCHHHHHHHHHHHHHHHHhhc----------------------------cccCCceEEecC----chhhccccCCCC
Confidence 999999999999988875431110 011222344445 333333333322
Q ss_pred ---CC--CceEEEechHhhhhcCCCceEEEEec----ceeccCCCCc----cccCCHHHHHHhhcccCCCCCCCceEEEE
Q 000129 818 ---DG--HVQVLVSTATLAWGVNLPAHTVIIKG----TQIYNPEKGA----WTELSPLDIMQMLGRAGRPQYDSYGEGII 884 (2114)
Q Consensus 818 ---~g--~i~VLVaT~tla~GVdlP~v~vVI~~----~~~yd~~~g~----~~~~s~~~~~Qr~GRAGR~g~d~~G~~ii 884 (2114)
+| ..+|+|+|++++..+.++++.+||+- ..+|||.-.. ..++|..+..||.|||||. .+|+|+.
T Consensus 306 ~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt---~pGkcfr 382 (699)
T KOG0925|consen 306 EKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFR 382 (699)
T ss_pred cccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC---CCCceEE
Confidence 12 36899999999999999999999984 5788887532 2678999999999999996 6899999
Q ss_pred EcCCCcHHHHHHhhcCCCcccchhhHhhHHHHHHHHhhccccChHHHHHHHHhhHHHHhhccCCcccCCCcccccccchh
Q 000129 885 ITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITL 964 (2114)
Q Consensus 885 l~~~~e~~~~~~ll~~~~pies~l~~~l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l 964 (2114)
+++..- +.+-+..+ ...+.++.+|.+-+..-.-..+ .++..++ +.+
T Consensus 383 LYte~~---~~~em~~~-----typeilrsNL~s~VL~LKklgI-----------------~dlvhfd-----fmD---- 428 (699)
T KOG0925|consen 383 LYTEEA---FEKEMQPQ-----TYPEILRSNLSSTVLQLKKLGI-----------------DDLVHFD-----FMD---- 428 (699)
T ss_pred eecHHh---hhhcCCCC-----CcHHHHHHhhHHHHHHHHhcCc-----------------ccccCCc-----CCC----
Confidence 998532 32222221 1223344444332221110111 1111121 222
Q ss_pred hhhhHHHHHHHHHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcC
Q 000129 965 GERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTV 1044 (2114)
Q Consensus 965 ~~~~~~li~~al~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~i~s~s~ef~~i~~ 1044 (2114)
.+--+.+..|++.|.-.++++-| ..+|++|++||.|+++|..+++++.+...+|+ .|+|.|-+|-+- .+..+
T Consensus 429 -pPAPEtLMrALE~LnYLaaLdDd-----GnLT~lG~imSEFPLdPqLAkmLi~S~efnCs-nEiLsisAMLsv-PncFv 500 (699)
T KOG0925|consen 429 -PPAPETLMRALEVLNYLAALDDD-----GNLTSLGEIMSEFPLDPQLAKMLIGSCEFNCS-NEILSISAMLSV-PNCFV 500 (699)
T ss_pred -CCChHHHHHHHHHhhhhhhhCCC-----cccchhhhhhhcCCCChHHHHHHhhcCCCCch-HHHHHHHhcccC-Ccccc
Confidence 22234567888888888888643 37899999999999999999999999888888 788887777544 45567
Q ss_pred Chh
Q 000129 1045 RQD 1047 (2114)
Q Consensus 1045 r~~ 1047 (2114)
|+.
T Consensus 501 Rp~ 503 (699)
T KOG0925|consen 501 RPT 503 (699)
T ss_pred CCC
Confidence 766
No 175
>PRK14701 reverse gyrase; Provisional
Probab=99.93 E-value=3.4e-25 Score=310.54 Aligned_cols=331 Identities=18% Similarity=0.178 Sum_probs=212.2
Q ss_pred HHHHHhc---CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHH
Q 000129 1331 LYEALYQ---GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (2114)
Q Consensus 1331 ~~~~l~~---gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~ 1407 (2114)
.+..+|. || .|+++|.++++.++.+++ +++.||||||||++++++.+.... .+. ++|||+||++|+.|++
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d-~li~APTGsGKTl~~~~~al~~~~---~g~--~aLVl~PTreLa~Qi~ 139 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKS-FSIVAPTGMGKSTFGAFIALFLAL---KGK--KCYIILPTTLLVKQTV 139 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCC-EEEEEcCCCCHHHHHHHHHHHHHh---cCC--eEEEEECHHHHHHHHH
Confidence 3444443 68 699999999999999665 999999999999977666554322 233 8999999999999999
Q ss_pred HHHHHHhcCC--CCcEEEEEcCCcccchh-----hcc--CCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC
Q 000129 1408 RDWEIKFGQG--LGMRVVELTGETAMDLK-----LLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (2114)
Q Consensus 1408 ~~~~~~f~~~--~g~~v~~l~G~~~~~~~-----~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~ 1478 (2114)
+.++. ++.. .++++..++|+.+...+ .+. ..+|+|+||+++....... ...+++++||||||++..
T Consensus 140 ~~l~~-l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l----~~~~i~~iVVDEAD~ml~ 214 (1638)
T PRK14701 140 EKIES-FCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM----KHLKFDFIFVDDVDAFLK 214 (1638)
T ss_pred HHHHH-HHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH----hhCCCCEEEEECceeccc
Confidence 99984 5443 35678888898775522 233 3599999999876654431 126799999999999875
Q ss_pred CC----------C--chHHH----HH---------------HHHHHHHhhcCCCce-EEEEcccCCChhHHHHHhcCCCC
Q 000129 1479 QG----------G--PVLEV----IV---------------SRMRYIASQVENKIR-IVALSTSLANAKDLGEWIGATSH 1526 (2114)
Q Consensus 1479 ~~----------g--~~le~----i~---------------srl~~i~~~~~~~~r-iV~lSATl~n~~dla~wl~~~~~ 1526 (2114)
++ | +.+.. ++ .++......++...+ ++.+|||++...+...++....
T Consensus 215 ~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l- 293 (1638)
T PRK14701 215 ASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELL- 293 (1638)
T ss_pred cccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCe-
Confidence 31 1 11111 11 011111112334445 5779999976555555553221
Q ss_pred ceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHH---HHHHHHHHHhhccCCc
Q 000129 1527 GLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYV---RLTAVDLMTYSSMDGD 1603 (2114)
Q Consensus 1527 ~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a---~~la~~L~~~~~~~~~ 1603 (2114)
.|..... ++ .+....+.+....... +.....+... .+.++||||+|++.+ +.++..|..
T Consensus 294 -~f~v~~~-~~-~lr~i~~~yi~~~~~~------k~~L~~ll~~--~g~~gIVF~~t~~~~e~ae~la~~L~~------- 355 (1638)
T PRK14701 294 -GFEVGSG-RS-ALRNIVDVYLNPEKII------KEHVRELLKK--LGKGGLIFVPIDEGAEKAEEIEKYLLE------- 355 (1638)
T ss_pred -EEEecCC-CC-CCCCcEEEEEECCHHH------HHHHHHHHHh--CCCCeEEEEeccccchHHHHHHHHHHH-------
Confidence 1222211 11 1111111111111111 0112223333 256899999998864 666655522
Q ss_pred ccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEec----CccccccCCCC-c
Q 000129 1604 QKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMS----SSMCWGVPLTA-H 1678 (2114)
Q Consensus 1604 ~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT----~~la~Gvdip~-~ 1678 (2114)
.+..+..+||+ |..+++.|++|+++||||| ++++||||+|+ +
T Consensus 356 ----------------------------~Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~V 402 (1638)
T PRK14701 356 ----------------------------DGFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERI 402 (1638)
T ss_pred ----------------------------CCCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCcc
Confidence 24567889985 8899999999999999999 58999999998 9
Q ss_pred EEEEEeeeEecCCcCcCCCC---CHhHH-------------HHhHcccCCCCCCCceEEEEEeecCcHHHHHHHH
Q 000129 1679 LVVVMGTQYYDGQENAHTDY---PVTDL-------------LQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFL 1737 (2114)
Q Consensus 1679 ~vVI~gt~~yd~~~~~~~~~---s~~~~-------------lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~~~l 1737 (2114)
++|| |+++|. ++..| +++.|||||.| ..+.++...........++++
T Consensus 403 ryvi----------~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g--~~~~~~~~~~~~~~~~~~~~l 465 (1638)
T PRK14701 403 RFAV----------FYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEG--IPIEGVLDVFPEDVEFLRSIL 465 (1638)
T ss_pred CEEE----------EeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccC--CcchhHHHhHHHHHHHHHHHh
Confidence 9999 666665 54433 45569999984 456565444444455555555
No 176
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.93 E-value=1.2e-25 Score=253.38 Aligned_cols=330 Identities=21% Similarity=0.298 Sum_probs=237.6
Q ss_pred hhHhhcCCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHH
Q 000129 485 WAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (2114)
Q Consensus 485 ~~~~~f~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~ 564 (2114)
.+++.| ..++++|.|..+|...+.+.+ +++..|||.||++||.||.|-. +| -+++|+|..+|+.
T Consensus 85 ilk~~f-~lekfrplq~~ain~~ma~ed-~~lil~tgggkslcyqlpal~a-------dg-------~alvi~plislme 148 (695)
T KOG0353|consen 85 ILKEQF-HLEKFRPLQLAAINATMAGED-AFLILPTGGGKSLCYQLPALCA-------DG-------FALVICPLISLME 148 (695)
T ss_pred HHHHHh-hHHhcChhHHHHhhhhhccCc-eEEEEeCCCccchhhhhhHHhc-------CC-------ceEeechhHHHHH
Confidence 344555 367899999999999988866 8888999999999999998864 12 5899999999999
Q ss_pred HHHHHHHHhhccCCcEEEEEeCCCccChhh---------hccceEEEcCHhHH---HHHHhccCCCcccccccEEEEecc
Q 000129 565 EVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---------IEETQIIVTTPEKW---DIITRKSGDRTYTQLVKLLIIDEI 632 (2114)
Q Consensus 565 q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---------~~~~~IiV~TPek~---d~l~r~~~~~~~l~~v~liIiDEa 632 (2114)
++.-.++.+ ||....+....+.+... .....+|+.|||++ ..+..+.........+.+|-|||+
T Consensus 149 dqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidev 224 (695)
T KOG0353|consen 149 DQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEV 224 (695)
T ss_pred HHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecce
Confidence 988877664 77776666554433221 13567999999997 222222211123456789999999
Q ss_pred ccccc---CCchhHHHHHHHHHHHHhhccccccEEEEccccCC--hHHHHHHHhccccCceEeecCCcccccceeEEEee
Q 000129 633 HLLHD---NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGI 707 (2114)
Q Consensus 633 H~l~d---~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn--~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~ 707 (2114)
|+... +++|.+..+ .-+ ....++..++||+||..| ..|+...|... ..|.|...|....+...+..-
T Consensus 225 hccsqwghdfr~dy~~l-~il----krqf~~~~iigltatatn~vl~d~k~il~ie---~~~tf~a~fnr~nl~yev~qk 296 (695)
T KOG0353|consen 225 HCCSQWGHDFRPDYKAL-GIL----KRQFKGAPIIGLTATATNHVLDDAKDILCIE---AAFTFRAGFNRPNLKYEVRQK 296 (695)
T ss_pred eehhhhCcccCcchHHH-HHH----HHhCCCCceeeeehhhhcchhhHHHHHHhHH---hhheeecccCCCCceeEeeeC
Confidence 99854 566766532 212 223578899999999876 56777777653 356777776555554433221
Q ss_pred ccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcc
Q 000129 708 QVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSN 787 (2114)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~ 787 (2114)
+. +...-. +.+...+.....+...||||-|++.|++++..|...++..
T Consensus 297 p~-n~dd~~----edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a--------------------------- 344 (695)
T KOG0353|consen 297 PG-NEDDCI----EDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHA--------------------------- 344 (695)
T ss_pred CC-ChHHHH----HHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccc---------------------------
Confidence 11 111111 1111222222336678999999999999999999876543
Q ss_pred hhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHH-
Q 000129 788 DLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQ- 866 (2114)
Q Consensus 788 ~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Q- 866 (2114)
+.+|+.|.+++|.-+-+.+..|+|+|+|||-.+++|||-|++++||+ .+.++ |+..|.|
T Consensus 345 ----------~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvih----hsl~k------sienyyqa 404 (695)
T KOG0353|consen 345 ----------GAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIH----HSLPK------SIENYYQA 404 (695)
T ss_pred ----------cccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEe----cccch------hHHHHHHH
Confidence 34599999999999999999999999999999999999999999999 44444 7778888
Q ss_pred ------------------------------------------hhcccCCCCCCCceEEEEEcCCCcHHHHHH
Q 000129 867 ------------------------------------------MLGRAGRPQYDSYGEGIIITGHSELRYYLS 896 (2114)
Q Consensus 867 ------------------------------------------r~GRAGR~g~d~~G~~iil~~~~e~~~~~~ 896 (2114)
..|||||.+ .+..||+++.-.+.-...+
T Consensus 405 sarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~--~~a~cilyy~~~difk~ss 474 (695)
T KOG0353|consen 405 SARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDD--MKADCILYYGFADIFKISS 474 (695)
T ss_pred HHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCC--CcccEEEEechHHHHhHHH
Confidence 789999976 6789999988666544433
No 177
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=1.6e-24 Score=283.28 Aligned_cols=324 Identities=19% Similarity=0.203 Sum_probs=213.9
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
|+ .|+++|..+...+..+ .|+.+.||+|||++|.+|++.....+ ..+.+++|++.||.|.++.+.
T Consensus 76 g~-~p~~vQl~~~~~l~~G---~Iaem~TGeGKTL~a~lp~~l~al~G-----------~~v~VvTpt~~LA~qd~e~~~ 140 (790)
T PRK09200 76 GM-RPYDVQLIGALVLHEG---NIAEMQTGEGKTLTATMPLYLNALEG-----------KGVHLITVNDYLAKRDAEEMG 140 (790)
T ss_pred CC-CCchHHHHhHHHHcCC---ceeeecCCCcchHHHHHHHHHHHHcC-----------CCeEEEeCCHHHHHHHHHHHH
Confidence 44 7899999998866544 39999999999999999998665543 369999999999999999999
Q ss_pred HhhccCCcEEEEEeCCCc-cC-hhhhccceEEEcCHhHH--HHHHhcc---CCCcccccccEEEEecccccc-c-CCch-
Q 000129 572 NRLQMYDVKVRELSGDQT-LT-RQQIEETQIIVTTPEKW--DIITRKS---GDRTYTQLVKLLIIDEIHLLH-D-NRGP- 641 (2114)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~-~~-~~~~~~~~IiV~TPek~--d~l~r~~---~~~~~l~~v~liIiDEaH~l~-d-~rg~- 641 (2114)
.++..+|++|+.++|+.+ .. ++....++|+++||+++ |.+..+. .....++.+.++||||||.++ | .+-|
T Consensus 141 ~l~~~lGl~v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpl 220 (790)
T PRK09200 141 QVYEFLGLTVGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPL 220 (790)
T ss_pred HHHhhcCCeEEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCce
Confidence 999999999999999887 32 23345799999999996 6555432 122456788999999999763 3 1222
Q ss_pred ----------hHHHHHHHHHHHHhhc-----cccc---------------------------------------------
Q 000129 642 ----------VLESIVARTVRQIETT-----KEHI--------------------------------------------- 661 (2114)
Q Consensus 642 ----------~le~iv~rl~~~~~~~-----~~~~--------------------------------------------- 661 (2114)
.+-.+..++...+... ....
T Consensus 221 iisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~ 300 (790)
T PRK09200 221 IISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFK 300 (790)
T ss_pred eeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhh
Confidence 1111111221111100 0011
Q ss_pred ----------------------------------------------------------------cEEEEccccCChHHHH
Q 000129 662 ----------------------------------------------------------------RLVGLSATLPNYEDVA 677 (2114)
Q Consensus 662 ----------------------------------------------------------------riv~lSATlpn~~dva 677 (2114)
++.|||.|.... -.
T Consensus 301 ~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~--~~ 378 (790)
T PRK09200 301 RDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTE--EK 378 (790)
T ss_pred cCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHH--HH
Confidence 223333332110 01
Q ss_pred HHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHH-HhCCCeEEEEecChHHHHHHHHHHHHH
Q 000129 678 LFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVHSRKETAKTARAIRDT 756 (2114)
Q Consensus 678 ~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~vLVFv~sr~~~~~~a~~L~~~ 756 (2114)
+|.... .-.+ ..-+..+|+.....-..+.. ....+..++. ..+.. +..+.|+||||+|++.++.++..|...
T Consensus 379 e~~~~Y-~l~v-~~IPt~kp~~r~d~~~~i~~-~~~~K~~al~----~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~ 451 (790)
T PRK09200 379 EFFEVY-NMEV-VQIPTNRPIIRIDYPDKVFV-TLDEKYKAVI----EEVKERHETGRPVLIGTGSIEQSETFSKLLDEA 451 (790)
T ss_pred HHHHHh-CCcE-EECCCCCCcccccCCCeEEc-CHHHHHHHHH----HHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC
Confidence 111111 0011 11122233221110000000 1112222222 22222 234789999999999999999999876
Q ss_pred hhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCC
Q 000129 757 ALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNL 836 (2114)
Q Consensus 757 ~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdl 836 (2114)
++. +..+||.+...++..+...++.| +|+|||++++||+|+
T Consensus 452 gi~-------------------------------------~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI 492 (790)
T PRK09200 452 GIP-------------------------------------HNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDI 492 (790)
T ss_pred CCC-------------------------------------EEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCC
Confidence 543 34569999999998888888777 799999999999999
Q ss_pred ---CceE-----EEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCc
Q 000129 837 ---PAHT-----VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890 (2114)
Q Consensus 837 ---P~v~-----vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e 890 (2114)
|++. +||+ |+.+. |...|.||+|||||.| .+|.++.+++..+
T Consensus 493 ~l~~~V~~~GGL~VI~----~d~p~------s~r~y~qr~GRtGR~G--~~G~s~~~is~eD 542 (790)
T PRK09200 493 KLGEGVHELGGLAVIG----TERME------SRRVDLQLRGRSGRQG--DPGSSQFFISLED 542 (790)
T ss_pred CcccccccccCcEEEe----ccCCC------CHHHHHHhhccccCCC--CCeeEEEEEcchH
Confidence 7998 9998 66555 6788999999999987 7899999887644
No 178
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=2.1e-26 Score=248.75 Aligned_cols=300 Identities=22% Similarity=0.289 Sum_probs=216.6
Q ss_pred ChhhHhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHH
Q 000129 483 PEWAQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (2114)
Q Consensus 483 p~~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ra 561 (2114)
|+.++.+- .||++|+.+|.+|||.++.+-+ ++..|..|.|||.+|.++-|+++.... +...+++++.||+
T Consensus 51 pellraivdcgfehpsevqhecipqailgmd-vlcqaksgmgktavfvl~tlqqiepv~--------g~vsvlvmchtre 121 (387)
T KOG0329|consen 51 PELLRAIVDCGFEHPSEVQHECIPQAILGMD-VLCQAKSGMGKTAVFVLATLQQIEPVD--------GQVSVLVMCHTRE 121 (387)
T ss_pred HHHHHHHHhccCCCchHhhhhhhhHHhhcch-hheecccCCCceeeeehhhhhhcCCCC--------CeEEEEEEeccHH
Confidence 55556555 7999999999999999999877 999999999999999999999986531 3568999999999
Q ss_pred HHHHHHHHHHHhhccC-CcEEEEEeCCCccChhh---hccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc
Q 000129 562 LVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (2114)
Q Consensus 562 La~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d 637 (2114)
||-|+.+++.++.+.+ +++|..+.|+....+.. .+-++|+|+||+++..+.|... ..+++++.+|+|||+.+.+
T Consensus 122 lafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~--l~lk~vkhFvlDEcdkmle 199 (387)
T KOG0329|consen 122 LAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRS--LNLKNVKHFVLDECDKMLE 199 (387)
T ss_pred HHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhcc--CchhhcceeehhhHHHHHH
Confidence 9999988876655433 79999999998876542 3467999999999988888765 6788999999999998754
Q ss_pred ---CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCccc---ccceeEEEeeccCc
Q 000129 638 ---NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRP---VPLSQQYIGIQVKK 711 (2114)
Q Consensus 638 ---~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rp---v~l~~~~~~~~~~~ 711 (2114)
.|+.+-| | .+.++...|++.+|||+++ ++....+.....++-.|...... -.++++|+..++..
T Consensus 200 ~lDMrRDvQE-i-------fr~tp~~KQvmmfsatlsk--eiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~e 269 (387)
T KOG0329|consen 200 QLDMRRDVQE-I-------FRMTPHEKQVMMFSATLSK--EIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENE 269 (387)
T ss_pred HHHHHHHHHH-H-------hhcCcccceeeeeeeecch--hhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhh
Confidence 3433322 2 2346788899999999984 34333332223333232222211 23445555444333
Q ss_pred hhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhh
Q 000129 712 PLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791 (2114)
Q Consensus 712 ~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ 791 (2114)
...++ ++ +++...-+|++||+.|....
T Consensus 270 KNrkl-------~d-LLd~LeFNQVvIFvKsv~Rl--------------------------------------------- 296 (387)
T KOG0329|consen 270 KNRKL-------ND-LLDVLEFNQVVIFVKSVQRL--------------------------------------------- 296 (387)
T ss_pred hhhhh-------hh-hhhhhhhcceeEeeehhhhh---------------------------------------------
Confidence 22222 21 23344467999999765430
Q ss_pred hccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhccc
Q 000129 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRA 871 (2114)
Q Consensus 792 ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRA 871 (2114)
+ | ..+ +|||+.+.||+|+..++.+||++.|-+ ...|+||+|||
T Consensus 297 -------------~----------f---~kr-~vat~lfgrgmdiervNi~~NYdmp~~----------~DtYlHrv~rA 339 (387)
T KOG0329|consen 297 -------------S----------F---QKR-LVATDLFGRGMDIERVNIVFNYDMPED----------SDTYLHRVARA 339 (387)
T ss_pred -------------h----------h---hhh-hHHhhhhccccCcccceeeeccCCCCC----------chHHHHHhhhh
Confidence 0 2 123 899999999999999999999554444 45699999999
Q ss_pred CCCCCCCceEEEEEcCCCcHHHHH
Q 000129 872 GRPQYDSYGEGIIITGHSELRYYL 895 (2114)
Q Consensus 872 GR~g~d~~G~~iil~~~~e~~~~~ 895 (2114)
||-| +.|.+|.+.+..+....+
T Consensus 340 grfG--tkglaitfvs~e~da~iL 361 (387)
T KOG0329|consen 340 GRFG--TKGLAITFVSDENDAKIL 361 (387)
T ss_pred hccc--cccceeehhcchhhHHHh
Confidence 9966 889999998876654443
No 179
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.93 E-value=7.7e-25 Score=272.83 Aligned_cols=382 Identities=23% Similarity=0.348 Sum_probs=249.5
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.|..+|.+.+..+ ..++.++|+|||.+|||.+-..+|=.++.. ...+ -+||++|+++|+.|+......+|....-.
T Consensus 511 ~Pd~WQ~elLDsv-Dr~eSavIVAPTSaGKTfisfY~iEKVLRe-sD~~--VVIyvaPtKaLVnQvsa~VyaRF~~~t~~ 586 (1330)
T KOG0949|consen 511 CPDEWQRELLDSV-DRNESAVIVAPTSAGKTFISFYAIEKVLRE-SDSD--VVIYVAPTKALVNQVSANVYARFDTKTFL 586 (1330)
T ss_pred CCcHHHHHHhhhh-hcccceEEEeeccCCceeccHHHHHHHHhh-cCCC--EEEEecchHHHhhhhhHHHHHhhccCccc
Confidence 5888999998877 446679999999999999887888777777 5566 89999999999999999999899543233
Q ss_pred EEEEEcCCcccchhh-ccCCcEEEEChhhHHHHHhh-hcccccccceeEEEecccccccCC-CCchHHHHHHHHHHHHhh
Q 000129 1421 RVVELTGETAMDLKL-LEKGQIIISTPEKWDALSRR-WKQRKYVQQVSLFIIDELHLIGGQ-GGPVLEVIVSRMRYIASQ 1497 (2114)
Q Consensus 1421 ~v~~l~G~~~~~~~~-l~~~~IIV~TPe~l~~l~r~-~~~~~~l~~v~liIiDEaH~l~~~-~g~~le~i~srl~~i~~~ 1497 (2114)
+...+.|+...+.+. .-+++|+|+-|+.+..++-. .....+..+++++|+||+|.+|.. .|..+|.++-.
T Consensus 587 rg~sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~l------- 659 (1330)
T KOG0949|consen 587 RGVSLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLL------- 659 (1330)
T ss_pred cchhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHh-------
Confidence 344455655555332 23679999999999987765 223457899999999999999974 56666555531
Q ss_pred cCCCceEEEEcccCCChhHHHHHhcCCC------CceeecCC--------------CCCccCc-------------E---
Q 000129 1498 VENKIRIVALSTSLANAKDLGEWIGATS------HGLFNFPP--------------GVRPVPL-------------E--- 1541 (2114)
Q Consensus 1498 ~~~~~riV~lSATl~n~~dla~wl~~~~------~~~~~f~~--------------~~rpv~l-------------~--- 1541 (2114)
.++.++++|||++|+..+..|+.... .....+.. +...+++ .
T Consensus 660 --i~CP~L~LSATigN~~l~qkWlnq~~R~~sr~~eli~~~erySel~l~v~n~~~e~n~~yl~~~falgerai~~~~~~ 737 (1330)
T KOG0949|consen 660 --IPCPFLVLSATIGNPNLFQKWLNQRGRAMSRNAELIDYGERYSELGLVVYNRMNEGNAYYLLKLFALGERAIIVSLRE 737 (1330)
T ss_pred --cCCCeeEEecccCCHHHHHHHHHHHHhhcCCCeeeeehhhhhhhhcceeeccCCCCcchHHHHHHhhchhhccchhhc
Confidence 36889999999999999999997210 01111110 0000000 0
Q ss_pred -------EEEeccccc------------------ch-H--------------------HHHHh--------------cCH
Q 000129 1542 -------IHIQGVDIT------------------NF-E--------------------ARMQA--------------MTK 1561 (2114)
Q Consensus 1542 -------~~~~~~~~~------------------~~-~--------------------~~~~~--------------~~~ 1561 (2114)
..+..+... .+ . ..+.. ..+
T Consensus 738 ~~~s~dd~~~lafe~~~~l~~~k~~kl~~k~~p~~~fe~~~~~~k~~~e~~r~~~~l~~~f~e~s~~q~kik~~~ki~~k 817 (1330)
T KOG0949|consen 738 LSESEDDNVVLAFEPLSCLTLRKLNKLLIKITPENFFESNIVTKKEVGEYGRHLLELFQGFIEDSLTQKQIKYVYKLQTK 817 (1330)
T ss_pred cccCCCCceEeeccchhHHHHHHHHHHHhhcCHHHhhhhhhheechHHHHHHHHHHHHHHhhhcChHHHHHHHHHHhhhh
Confidence 000000000 00 0 00000 000
Q ss_pred HH---------------HHHHHH---Hh--cCCCCEEEEeCChHHHHHHHHHHHHhhccCCc-c----------------
Q 000129 1562 PT---------------FTAIVQ---HA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGD-Q---------------- 1604 (2114)
Q Consensus 1562 ~~---------------~~~i~~---~l--~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~-~---------------- 1604 (2114)
++ ...++. .+ ...-|+|+|-..|..|+.+|..+...+..... .
T Consensus 818 ~Vnkqle~~~~ys~e~i~~nil~ll~dLkEK~~lpaicfn~dr~fcekla~kv~~~Le~~e~Ee~k~k~m~k~kk~~~~a 897 (1330)
T KOG0949|consen 818 EVNKQLESVVDYSSEYILENILDLLMDLKEKNMLPAICFNTDRDFCEKLALKVHRQLESMEMEEKKDKLMEKMKKEAKRA 897 (1330)
T ss_pred hhhhHhhhcccCcHHHHHHHHHHHHHHHHhccccchhcccchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 00 000000 00 23458999999998888777654322111000 0
Q ss_pred -----------------cc-------------cccCC----CcccchhhHhhh--hHHHHHHHhccceEeecCCCCHHHH
Q 000129 1605 -----------------KS-------------AFLLW----PAEEVEPFIDNI--QEEMLKATLRHGVGYLHEGLNKTDQ 1648 (2114)
Q Consensus 1605 -----------------~~-------------~~l~~----~~~~l~~~~~~i--~d~~L~~~l~~gV~~~H~~ls~~dR 1648 (2114)
.. .|+.. +..+++.....+ .+..+...+-.|||+||+||+...|
T Consensus 898 ~~r~Kt~e~~~k~~~~~ek~~~~k~d~~~~~~~f~dp~~~~~~~~f~~~~~~~g~~~~~~id~lyRGiG~HHaglNr~yR 977 (1330)
T KOG0949|consen 898 RDREKTKESWIKESIAAEKSFQMKNDKKNIKYTFLDPLTKLTDYEFEEETKFIGNTDFEFIDMLYRGIGVHHAGLNRKYR 977 (1330)
T ss_pred HHHHHHHHHHhhhhhhhhhhhccccccccceEEecCcccccchhhhhhhccccCCCcHHHHHHHHhcccccccccchHHH
Confidence 00 00000 000010000011 2455677888899999999999999
Q ss_pred HHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecC
Q 000129 1649 EVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP 1728 (2114)
Q Consensus 1649 ~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~ 1728 (2114)
..|+-+|+.|...||+||.+++-|||.|+.+||..|.. ...++..|.||+|||||.|||..|.++.|--+.
T Consensus 978 ~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDs---------LQL~plny~QmaGRAGRRGFD~lGnV~FmgiP~ 1048 (1330)
T KOG0949|consen 978 SLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDS---------LQLDPLNYKQMAGRAGRRGFDTLGNVVFMGIPR 1048 (1330)
T ss_pred HHHHHHhhcCceEEEEEeeehhcccCCCceeEEEeccc---------cccCchhHHhhhccccccccccccceEEEeCcH
Confidence 99999999999999999999999999999999985432 456788999999999999999999999886553
Q ss_pred cHHHHHHHH-----HhccCCCCc
Q 000129 1729 RKEYYKKFL-----RLTQNPNYY 1746 (2114)
Q Consensus 1729 ~~~~~~~~l-----Rl~~nP~~y 1746 (2114)
. ...+++ .+..+|+|-
T Consensus 1049 ~--kv~rLlts~L~diqG~~p~T 1069 (1330)
T KOG0949|consen 1049 Q--KVQRLLTSLLPDIQGAYPYT 1069 (1330)
T ss_pred H--HHHHHHHHhhhcccCCCcch
Confidence 2 333444 455666654
No 180
>PRK09401 reverse gyrase; Reviewed
Probab=99.93 E-value=7.7e-25 Score=301.81 Aligned_cols=303 Identities=18% Similarity=0.185 Sum_probs=197.9
Q ss_pred hHHHHHhc---CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHH
Q 000129 1330 PLYEALYQ---GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKER 1406 (2114)
Q Consensus 1330 ~~~~~l~~---gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~ 1406 (2114)
..++++|. |+ .|+++|.++++.++.+. +++++||||||||..+ +++...+.. .+. +++||+||++||.|+
T Consensus 67 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~g~-dv~i~ApTGsGKT~f~-l~~~~~l~~--~g~--~alIL~PTreLa~Qi 139 (1176)
T PRK09401 67 KEFEKFFKKKTGS-KPWSLQRTWAKRLLLGE-SFAIIAPTGVGKTTFG-LVMSLYLAK--KGK--KSYIIFPTRLLVEQV 139 (1176)
T ss_pred HHHHHHHHHhcCC-CCcHHHHHHHHHHHCCC-cEEEEcCCCCCHHHHH-HHHHHHHHh--cCC--eEEEEeccHHHHHHH
Confidence 34556664 45 89999999999999854 5999999999999744 454444433 233 999999999999999
Q ss_pred HHHHHHHhcCCCCcEEEEEcCCccc---c----hhhcc--CCcEEEEChhhHHHHHhhhcccccccceeEEEeccccccc
Q 000129 1407 YRDWEIKFGQGLGMRVVELTGETAM---D----LKLLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (2114)
Q Consensus 1407 ~~~~~~~f~~~~g~~v~~l~G~~~~---~----~~~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~ 1477 (2114)
++.++ .++...++.+..+.|+... . ...+. ..+|+|+||+++...+.. .....++++|+||||.+.
T Consensus 140 ~~~l~-~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~----l~~~~~~~lVvDEaD~~L 214 (1176)
T PRK09401 140 VEKLE-KFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE----LPKKKFDFVFVDDVDAVL 214 (1176)
T ss_pred HHHHH-HHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh----ccccccCEEEEEChHHhh
Confidence 99999 5666667788777765432 1 12222 469999999998765542 234569999999999887
Q ss_pred CC----------CCc---hHHHHHHHHH-------------HHHhhc----CCCceEEEEcccCCCh-hH---HHHHhcC
Q 000129 1478 GQ----------GGP---VLEVIVSRMR-------------YIASQV----ENKIRIVALSTSLANA-KD---LGEWIGA 1523 (2114)
Q Consensus 1478 ~~----------~g~---~le~i~srl~-------------~i~~~~----~~~~riV~lSATl~n~-~d---la~wl~~ 1523 (2114)
++ .|. .++.++..++ .+.... +...|++++|||.+.. .. +.+.++
T Consensus 215 ~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~- 293 (1176)
T PRK09401 215 KSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLG- 293 (1176)
T ss_pred hcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccce-
Confidence 52 122 2222322221 111111 1267899999999642 11 122222
Q ss_pred CCCceeecCCCCCc-cCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHH---HHHHHHHHHHhhc
Q 000129 1524 TSHGLFNFPPGVRP-VPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKY---VRLTAVDLMTYSS 1599 (2114)
Q Consensus 1524 ~~~~~~~f~~~~rp-v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~---a~~la~~L~~~~~ 1599 (2114)
+........ -.+...+.... . . ......+... -+.++||||++++. |..++..|..
T Consensus 294 -----~~v~~~~~~~rnI~~~yi~~~--~---k-----~~~L~~ll~~--l~~~~LIFv~t~~~~~~ae~l~~~L~~--- 353 (1176)
T PRK09401 294 -----FEVGSPVFYLRNIVDSYIVDE--D---S-----VEKLVELVKR--LGDGGLIFVPSDKGKEYAEELAEYLED--- 353 (1176)
T ss_pred -----EEecCcccccCCceEEEEEcc--c---H-----HHHHHHHHHh--cCCCEEEEEecccChHHHHHHHHHHHH---
Confidence 111111000 01111111000 0 0 1112223333 24689999999877 8777766532
Q ss_pred cCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEe----cCccccccCC
Q 000129 1600 MDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVM----SSSMCWGVPL 1675 (2114)
Q Consensus 1600 ~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVa----T~~la~Gvdi 1675 (2114)
.+..+..+||+| ++ .++.|++|+++|||| |++++||||+
T Consensus 354 --------------------------------~gi~v~~~hg~l----~~-~l~~F~~G~~~VLVatas~tdv~aRGIDi 396 (1176)
T PRK09401 354 --------------------------------LGINAELAISGF----ER-KFEKFEEGEVDVLVGVASYYGVLVRGIDL 396 (1176)
T ss_pred --------------------------------CCCcEEEEeCcH----HH-HHHHHHCCCCCEEEEecCCCCceeecCCC
Confidence 245688999999 22 349999999999999 6899999999
Q ss_pred CC-cEEEEEeeeEecCCcCcCCCC------CHhHHHHhHcccCC
Q 000129 1676 TA-HLVVVMGTQYYDGQENAHTDY------PVTDLLQMMGHASR 1712 (2114)
Q Consensus 1676 p~-~~vVI~gt~~yd~~~~~~~~~------s~~~~lQr~GRAGR 1712 (2114)
|. +++|| ++++|. ....+.||+||+-+
T Consensus 397 P~~IryVI----------~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 397 PERIRYAI----------FYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred CcceeEEE----------EeCCCCEEEeccccccCHHHHHHHHh
Confidence 99 89999 777776 45678999999864
No 181
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.93 E-value=3.1e-24 Score=277.69 Aligned_cols=322 Identities=17% Similarity=0.193 Sum_probs=204.1
Q ss_pred CCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhc
Q 000129 496 LNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ 575 (2114)
Q Consensus 496 l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~ 575 (2114)
++|+|.+++..+..... .++.++||+|||++|.+|++.....+ ..++|++|+++||.|.++.+..++.
T Consensus 69 lrpydVQlig~l~l~~G-~Iaem~TGeGKTLta~Lpa~l~aL~g-----------~~V~VVTpn~yLA~Rdae~m~~l~~ 136 (762)
T TIGR03714 69 MFPYDVQVLGAIVLHQG-NIAEMKTGEGKTLTATMPLYLNALTG-----------KGAMLVTTNDYLAKRDAEEMGPVYE 136 (762)
T ss_pred CCccHHHHHHHHHhcCC-ceeEecCCcchHHHHHHHHHHHhhcC-----------CceEEeCCCHHHHHHHHHHHHHHHh
Confidence 34444445544433333 69999999999999999987665543 2599999999999999999999999
Q ss_pred cCCcEEEEEeCCCc---cC---hhhhccceEEEcCHhHH--HHHHhcc---CCCcccccccEEEEecccccc-cC-Cchh
Q 000129 576 MYDVKVRELSGDQT---LT---RQQIEETQIIVTTPEKW--DIITRKS---GDRTYTQLVKLLIIDEIHLLH-DN-RGPV 642 (2114)
Q Consensus 576 ~~gi~v~~l~Gd~~---~~---~~~~~~~~IiV~TPek~--d~l~r~~---~~~~~l~~v~liIiDEaH~l~-d~-rg~~ 642 (2114)
.+|++|+..+++.. .. .+....++|+++||+++ |.+.... .....++.+.++||||||.++ |+ |-|.
T Consensus 137 ~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpl 216 (762)
T TIGR03714 137 WLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPL 216 (762)
T ss_pred hcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCe
Confidence 99999998877522 22 22335899999999997 5443321 122356789999999999873 21 2111
Q ss_pred -----------HHHHHHHHHHHHhhc-----cccc---------------------------------------------
Q 000129 643 -----------LESIVARTVRQIETT-----KEHI--------------------------------------------- 661 (2114)
Q Consensus 643 -----------le~iv~rl~~~~~~~-----~~~~--------------------------------------------- 661 (2114)
+-....++.+.+... ...-
T Consensus 217 iisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~ 296 (762)
T TIGR03714 217 VISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFK 296 (762)
T ss_pred eeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHh
Confidence 111111111111000 0011
Q ss_pred ----------------------------------------------------------------cEEEEccccCChHHHH
Q 000129 662 ----------------------------------------------------------------RLVGLSATLPNYEDVA 677 (2114)
Q Consensus 662 ----------------------------------------------------------------riv~lSATlpn~~dva 677 (2114)
++.|||.|.. ..-.
T Consensus 297 ~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~--~~~~ 374 (762)
T TIGR03714 297 RNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGK--VAEK 374 (762)
T ss_pred cCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCh--hHHH
Confidence 3334444421 1112
Q ss_pred HHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHH-HhCCCeEEEEecChHHHHHHHHHHHHH
Q 000129 678 LFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVHSRKETAKTARAIRDT 756 (2114)
Q Consensus 678 ~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~vLVFv~sr~~~~~~a~~L~~~ 756 (2114)
+|.... .- -+..-+..+|+.....--.+.. ....+..++. +.+.+ +..+.|+||||+|++.++.++..|...
T Consensus 375 Ef~~iY-~l-~v~~IPt~kp~~r~d~~d~i~~-~~~~K~~ai~----~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~ 447 (762)
T TIGR03714 375 EFIETY-SL-SVVKIPTNKPIIRIDYPDKIYA-TLPEKLMATL----EDVKEYHETGQPVLLITGSVEMSEIYSELLLRE 447 (762)
T ss_pred HHHHHh-CC-CEEEcCCCCCeeeeeCCCeEEE-CHHHHHHHHH----HHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHC
Confidence 222211 01 1122233333322110000000 1112222222 22222 344779999999999999999999876
Q ss_pred hhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCC
Q 000129 757 ALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNL 836 (2114)
Q Consensus 757 ~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdl 836 (2114)
++. ...+||.+...+|..+...++.| +|+|||++++||+|+
T Consensus 448 gi~-------------------------------------~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI 488 (762)
T TIGR03714 448 GIP-------------------------------------HNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDI 488 (762)
T ss_pred CCC-------------------------------------EEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCC
Confidence 543 34559999999998888877777 799999999999999
Q ss_pred C---------ceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCc
Q 000129 837 P---------AHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890 (2114)
Q Consensus 837 P---------~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e 890 (2114)
| ++.||++ |++++ ...+ .||+|||||.| .+|.++.+++..+
T Consensus 489 ~l~~~v~~~GGL~vIit----~~~ps------~rid-~qr~GRtGRqG--~~G~s~~~is~eD 538 (762)
T TIGR03714 489 KLGKGVAELGGLAVIGT----ERMEN------SRVD-LQLRGRSGRQG--DPGSSQFFVSLED 538 (762)
T ss_pred CCCccccccCCeEEEEe----cCCCC------cHHH-HHhhhcccCCC--CceeEEEEEccch
Confidence 9 9999998 77775 3344 99999999987 7899999887654
No 182
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=2.3e-24 Score=279.28 Aligned_cols=317 Identities=13% Similarity=0.214 Sum_probs=205.6
Q ss_pred CCCCHHHHHHHHHHHcCC--CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1340 KHFNPIQTQVFTVLYNTD--DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il~~~--~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
..++|+|.+++..++..+ .+.+|++|||+|||++++.++. .+ .+ ++|||||+..|+.|+.+++. +|...
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l-----~k--~tLILvps~~Lv~QW~~ef~-~~~~l 324 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TV-----KK--SCLVLCTSAVSVEQWKQQFK-MWSTI 324 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-Hh-----CC--CEEEEeCcHHHHHHHHHHHH-HhcCC
Confidence 368999999999998644 4789999999999999976554 22 23 79999999999999999998 45443
Q ss_pred CCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcc----cccc--cceeEEEecccccccCCCCchHHHHHHHH
Q 000129 1418 LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQ----RKYV--QQVSLFIIDELHLIGGQGGPVLEVIVSRM 1491 (2114)
Q Consensus 1418 ~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~----~~~l--~~v~liIiDEaH~l~~~~g~~le~i~srl 1491 (2114)
....+..++|+.... ......|+|+|++.+....++... ...+ ...++||+||||++.. +.+..++
T Consensus 325 ~~~~I~~~tg~~k~~--~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA---~~fr~il--- 396 (732)
T TIGR00603 325 DDSQICRFTSDAKER--FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA---AMFRRVL--- 396 (732)
T ss_pred CCceEEEEecCcccc--cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH---HHHHHHH---
Confidence 345778888864332 123468999999876433222100 0112 3578999999999852 2222222
Q ss_pred HHHHhhcCCCceEEEEcccCCChh----HHHHHhcCCCCceeecCC-----CCCccCcEEE--EecccccchH-------
Q 000129 1492 RYIASQVENKIRIVALSTSLANAK----DLGEWIGATSHGLFNFPP-----GVRPVPLEIH--IQGVDITNFE------- 1553 (2114)
Q Consensus 1492 ~~i~~~~~~~~riV~lSATl~n~~----dla~wl~~~~~~~~~f~~-----~~rpv~l~~~--~~~~~~~~~~------- 1553 (2114)
..+. ....+|||||+...+ ++...+|-. +|.... ...-.+.+.. ........+.
T Consensus 397 ----~~l~-a~~RLGLTATP~ReD~~~~~L~~LiGP~---vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~ 468 (732)
T TIGR00603 397 ----TIVQ-AHCKLGLTATLVREDDKITDLNFLIGPK---LYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENS 468 (732)
T ss_pred ----HhcC-cCcEEEEeecCcccCCchhhhhhhcCCe---eeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcc
Confidence 2222 345699999996433 233333322 222110 0011111111 1111111111
Q ss_pred ---HHHHhcCHHHHHH---HHHH-hcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHH
Q 000129 1554 ---ARMQAMTKPTFTA---IVQH-AKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEE 1626 (2114)
Q Consensus 1554 ---~~~~~~~~~~~~~---i~~~-l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~ 1626 (2114)
.....++...+.. +... -..+.++||||.+...+..++..|
T Consensus 469 ~~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L-------------------------------- 516 (732)
T TIGR00603 469 RKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL-------------------------------- 516 (732)
T ss_pred hhhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc--------------------------------
Confidence 1112233333332 2222 136778999999988876666433
Q ss_pred HHHHHhccceEeecCCCCHHHHHHHHHHHhcC-CceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCC-CHhHHH
Q 000129 1627 MLKATLRHGVGYLHEGLNKTDQEVVSALFEAG-KIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDY-PVTDLL 1704 (2114)
Q Consensus 1627 ~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g-~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~-s~~~~l 1704 (2114)
++.++||+++..+|..+++.|++| .+++||+|+++.+|+|+|++.+|| +...+. |...|+
T Consensus 517 --------~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI----------~~s~~~gS~~q~i 578 (732)
T TIGR00603 517 --------GKPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLI----------QISSHYGSRRQEA 578 (732)
T ss_pred --------CCceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEE----------EeCCCCCCHHHHH
Confidence 356789999999999999999875 889999999999999999999999 555553 899999
Q ss_pred HhHcccCCCCCCCc-----eEEEEEeecCcHH
Q 000129 1705 QMMGHASRPLLDNS-----GKCVILCHAPRKE 1731 (2114)
Q Consensus 1705 Qr~GRAGR~~~~~~-----G~~iil~~~~~~~ 1731 (2114)
||+||++|++.++. +..|.+++....+
T Consensus 579 QRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E 610 (732)
T TIGR00603 579 QRLGRILRAKKGSDAEEYNAFFYSLVSKDTQE 610 (732)
T ss_pred HHhcccccCCCCCccccccceEEEEecCCchH
Confidence 99999999854332 3347777665443
No 183
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=1.7e-24 Score=264.52 Aligned_cols=433 Identities=18% Similarity=0.158 Sum_probs=284.5
Q ss_pred HHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc---CCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEE
Q 000129 1349 VFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS---ETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVEL 1425 (2114)
Q Consensus 1349 ~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~---~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l 1425 (2114)
+..+| +.+..|||||.||||||+.....++..=-... ..| .+-+..|+|-.|..++++....++. +|..|+..
T Consensus 264 IMEaI-n~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~g--mIGITqPRRVAaiamAkRVa~EL~~-~~~eVsYq 339 (1172)
T KOG0926|consen 264 IMEAI-NENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPG--MIGITQPRRVAAIAMAKRVAFELGV-LGSEVSYQ 339 (1172)
T ss_pred HHHHh-hcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCC--eeeecCchHHHHHHHHHHHHHHhcc-CccceeEE
Confidence 34444 45777999999999999887666665422211 123 6778999999999999999888876 46666654
Q ss_pred cCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCC-----
Q 000129 1426 TGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVEN----- 1500 (2114)
Q Consensus 1426 ~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~----- 1500 (2114)
.. .+...-..+.|.++|.|.| +|.......+..++.||+||||.-. -....+--+++|+-.+...+..
T Consensus 340 IR---fd~ti~e~T~IkFMTDGVL---LrEi~~DflL~kYSvIIlDEAHERS-vnTDILiGmLSRiV~LR~k~~ke~~~~ 412 (1172)
T KOG0926|consen 340 IR---FDGTIGEDTSIKFMTDGVL---LREIENDFLLTKYSVIILDEAHERS-VNTDILIGMLSRIVPLRQKYYKEQCQI 412 (1172)
T ss_pred EE---eccccCCCceeEEecchHH---HHHHHHhHhhhhceeEEechhhhcc-chHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 32 1222234568999999984 4555557789999999999999432 1233444467777666555444
Q ss_pred -CceEEEEcccCCChhHHHHHhcCCCCceeecCC-----CCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCC
Q 000129 1501 -KIRIVALSTSLANAKDLGEWIGATSHGLFNFPP-----GVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNE 1574 (2114)
Q Consensus 1501 -~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~-----~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 1574 (2114)
++++|.||||+ ...||.+ . ..+|...| ..|..|+.+|+..-...+|..... .....|.+. .+.
T Consensus 413 kpLKLIIMSATL-RVsDFte---n--k~LFpi~pPlikVdARQfPVsIHF~krT~~DYi~eAf----rKtc~IH~k-LP~ 481 (1172)
T KOG0926|consen 413 KPLKLIIMSATL-RVSDFTE---N--KRLFPIPPPLIKVDARQFPVSIHFNKRTPDDYIAEAF----RKTCKIHKK-LPP 481 (1172)
T ss_pred CceeEEEEeeeE-Eeccccc---C--ceecCCCCceeeeecccCceEEEeccCCCchHHHHHH----HHHHHHhhc-CCC
Confidence 89999999999 4444432 1 11232222 447778888887666555543321 112234444 467
Q ss_pred CCEEEEeCChHHHHHHHHHHHHhhccCCc-----------------cccc-----ccCCCcccchhhHh-----------
Q 000129 1575 KPALVFVPSRKYVRLTAVDLMTYSSMDGD-----------------QKSA-----FLLWPAEEVEPFID----------- 1621 (2114)
Q Consensus 1575 ~~~LVFv~sr~~a~~la~~L~~~~~~~~~-----------------~~~~-----~l~~~~~~l~~~~~----------- 1621 (2114)
+.+|||+....++..++..|.......-. .... -.....+.+..-.+
T Consensus 482 G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~ 561 (1172)
T KOG0926|consen 482 GGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGF 561 (1172)
T ss_pred CcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccc
Confidence 78999999999999999999876431100 0000 00000011100000
Q ss_pred -----------------------hhhHHHHHHHhc--------cceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccc
Q 000129 1622 -----------------------NIQEEMLKATLR--------HGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMC 1670 (2114)
Q Consensus 1622 -----------------------~i~d~~L~~~l~--------~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la 1670 (2114)
...+..+....+ .-|..+++-|+.+++.+|++.-..|..-++|||++++
T Consensus 562 ~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAE 641 (1172)
T KOG0926|consen 562 ASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAE 641 (1172)
T ss_pred hhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchh
Confidence 001111111111 1278899999999999999999999999999999999
Q ss_pred cccCCCCcEEEEEe----eeEecCCcCc---C-CCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHH-HHHHHH----
Q 000129 1671 WGVPLTAHLVVVMG----TQYYDGQENA---H-TDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE-YYKKFL---- 1737 (2114)
Q Consensus 1671 ~Gvdip~~~vVI~g----t~~yd~~~~~---~-~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~-~~~~~l---- 1737 (2114)
.+++||++.+||-+ +..||...+. . ..+|.++.-||+|||||. ..|+||.++++.-.+ -|..|-
T Consensus 642 TSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRt---gpGHcYRLYSSAVf~~~Fe~fS~PEI 718 (1172)
T KOG0926|consen 642 TSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRT---GPGHCYRLYSSAVFSNDFEEFSLPEI 718 (1172)
T ss_pred cccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCC---CCCceeehhhhHHhhcchhhhccHHH
Confidence 99999999999932 3467665432 1 246788899999999995 599999999875432 222222
Q ss_pred ------------HhccCCCCccccCCCccchHHHHHHHHHHHHHHHHHCCCceecCCCccccCcccchhhhcccCHhHHH
Q 000129 1738 ------------RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIE 1805 (2114)
Q Consensus 1738 ------------Rl~~nP~~y~l~~~s~~~l~~~lselve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~i~~~T~~ 1805 (2114)
+.+.-++.-++..-+..+ ...++.+...|...|+++.++ ..|.+|..||.|+++|+-.+
T Consensus 719 lk~Pve~lvLqMKsMnI~kVvnFPFPtpPd-----~~~L~~Aer~L~~LgALd~~g----~lT~lGk~mS~FPlsPrfsK 789 (1172)
T KOG0926|consen 719 LKKPVESLVLQMKSMNIDKVVNFPFPTPPD-----RSALEKAERRLKALGALDSNG----GLTKLGKAMSLFPLSPRFSK 789 (1172)
T ss_pred hhCcHHHHHHHHHhcCccceecCCCCCCcc-----HHHHHHHHHHHHHhccccccC----CcccccchhcccccChhHHH
Confidence 222222222222223322 256788999999999997643 68999999999999999999
Q ss_pred HHHhhcCCCC
Q 000129 1806 RFSSSLTPKT 1815 (2114)
Q Consensus 1806 ~f~~sl~~~~ 1815 (2114)
++..+-..++
T Consensus 790 mL~~~~Q~~~ 799 (1172)
T KOG0926|consen 790 MLATSDQHNL 799 (1172)
T ss_pred HHHHHHhhcc
Confidence 9987554443
No 184
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=3.2e-25 Score=239.72 Aligned_cols=296 Identities=19% Similarity=0.275 Sum_probs=217.8
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q 1405 (2114)
|+.+.++++-. ||.+|+.+|.+||+...-+-+ ++..|..|.|||.+|.++-++.+... .|.+.+++++.||+||.|
T Consensus 49 lkpellraivdcgfehpsevqhecipqailgmd-vlcqaksgmgktavfvl~tlqqiepv--~g~vsvlvmchtrelafq 125 (387)
T KOG0329|consen 49 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMD-VLCQAKSGMGKTAVFVLATLQQIEPV--DGQVSVLVMCHTRELAFQ 125 (387)
T ss_pred cCHHHHHHHHhccCCCchHhhhhhhhHHhhcch-hheecccCCCceeeeehhhhhhcCCC--CCeEEEEEEeccHHHHHH
Confidence 44566777765 899999999999999888666 99999999999999999999888763 455689999999999999
Q ss_pred HHHHHHHHhcCC-CCcEEEEEcCCcccc--hhhccCC-cEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCC
Q 000129 1406 RYRDWEIKFGQG-LGMRVVELTGETAMD--LKLLEKG-QIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2114)
Q Consensus 1406 ~~~~~~~~f~~~-~g~~v~~l~G~~~~~--~~~l~~~-~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g 1481 (2114)
+.+++. +|+++ .++++.++.|+.... ...+.++ +|+|+||+++..+.|. ....++++..+|+|||+.+.++-
T Consensus 126 i~~ey~-rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~--k~l~lk~vkhFvlDEcdkmle~l- 201 (387)
T KOG0329|consen 126 ISKEYE-RFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRN--RSLNLKNVKHFVLDECDKMLEQL- 201 (387)
T ss_pred HHHHHH-HHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHh--ccCchhhcceeehhhHHHHHHHH-
Confidence 999988 78877 678999999987653 4455555 9999999999999997 45679999999999999775431
Q ss_pred chHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHHHhcCCCCceeecCCCCCccCcEEEEe--------cccccch
Q 000129 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQ--------GVDITNF 1552 (2114)
Q Consensus 1482 ~~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~--------~~~~~~~ 1552 (2114)
.....+..+.+.++...|+..+|||+++. +-+..-+-.. |+++++. +......
T Consensus 202 ----DMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQd--------------PmEi~vDdE~KLtLHGLqQ~Yv 263 (387)
T KOG0329|consen 202 ----DMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQD--------------PMEIFVDDEAKLTLHGLQQYYV 263 (387)
T ss_pred ----HHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcC--------------chhhhccchhhhhhhhHHHHHH
Confidence 13344566667778899999999999763 2222222122 2222222 1111000
Q ss_pred HHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHh
Q 000129 1553 EARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL 1632 (2114)
Q Consensus 1553 ~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l 1632 (2114)
.-.-...++..+. ++.. .+-.+++||+.|....
T Consensus 264 kLke~eKNrkl~d-LLd~-LeFNQVvIFvKsv~Rl--------------------------------------------- 296 (387)
T KOG0329|consen 264 KLKENEKNRKLND-LLDV-LEFNQVVIFVKSVQRL--------------------------------------------- 296 (387)
T ss_pred hhhhhhhhhhhhh-hhhh-hhhcceeEeeehhhhh---------------------------------------------
Confidence 0000111112222 2222 3456888888765210
Q ss_pred ccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCC
Q 000129 1633 RHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASR 1712 (2114)
Q Consensus 1633 ~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR 1712 (2114)
+ | ..+ +|||+.+.||+|+..++.|+ +|+.|-+...|+||+|||||
T Consensus 297 -----------~----------f---~kr-~vat~lfgrgmdiervNi~~----------NYdmp~~~DtYlHrv~rAgr 341 (387)
T KOG0329|consen 297 -----------S----------F---QKR-LVATDLFGRGMDIERVNIVF----------NYDMPEDSDTYLHRVARAGR 341 (387)
T ss_pred -----------h----------h---hhh-hHHhhhhccccCcccceeee----------ccCCCCCchHHHHHhhhhhc
Confidence 0 2 123 89999999999999999999 99999999999999999999
Q ss_pred CCCCCceEEEEEeecCcHH
Q 000129 1713 PLLDNSGKCVILCHAPRKE 1731 (2114)
Q Consensus 1713 ~~~~~~G~~iil~~~~~~~ 1731 (2114)
- +..|.++.|....+..
T Consensus 342 f--Gtkglaitfvs~e~da 358 (387)
T KOG0329|consen 342 F--GTKGLAITFVSDENDA 358 (387)
T ss_pred c--ccccceeehhcchhhH
Confidence 6 7999999999876543
No 185
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.92 E-value=1.3e-23 Score=261.67 Aligned_cols=315 Identities=23% Similarity=0.345 Sum_probs=230.5
Q ss_pred CCCHHHHHHHHHHHcC-----CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000129 1341 HFNPIQTQVFTVLYNT-----DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~-----~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~ 1415 (2114)
.+|.-|.+++..|... .-|=++.|.-|||||+++.++++..+.. +. ++..++||.-||.|.|..+.+.|.
T Consensus 262 ~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~---G~--Q~ALMAPTEILA~QH~~~~~~~l~ 336 (677)
T COG1200 262 KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA---GY--QAALMAPTEILAEQHYESLRKWLE 336 (677)
T ss_pred CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc---CC--eeEEeccHHHHHHHHHHHHHHHhh
Confidence 6999999999998742 2377999999999999999999988876 44 999999999999999999997776
Q ss_pred CCCCcEEEEEcCCcccch-----hhccC--CcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHH
Q 000129 1416 QGLGMRVVELTGETAMDL-----KLLEK--GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 1488 (2114)
Q Consensus 1416 ~~~g~~v~~l~G~~~~~~-----~~l~~--~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~ 1488 (2114)
. +|++|+.++|...... ..+.+ .+|+|+|-. ++. ....+++++++|+||=|+.+ +.
T Consensus 337 ~-~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHA----LiQ---d~V~F~~LgLVIiDEQHRFG---------V~ 399 (677)
T COG1200 337 P-LGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHA----LIQ---DKVEFHNLGLVIIDEQHRFG---------VH 399 (677)
T ss_pred h-cCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcch----hhh---cceeecceeEEEEecccccc---------HH
Confidence 6 4899999999876542 23334 399999954 222 34578999999999999987 55
Q ss_pred HHHHHHHhhcCC-CceEEEEcccCCC-hhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHH
Q 000129 1489 SRMRYIASQVEN-KIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTA 1566 (2114)
Q Consensus 1489 srl~~i~~~~~~-~~riV~lSATl~n-~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 1566 (2114)
.|.+.... +. .+.++.||||+-. .-.+..|=...-+.+-..++...|+.- ...... . ....+..
T Consensus 400 QR~~L~~K--G~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T--~~i~~~--~--------~~~v~e~ 465 (677)
T COG1200 400 QRLALREK--GEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITT--VVIPHE--R--------RPEVYER 465 (677)
T ss_pred HHHHHHHh--CCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEE--EEeccc--c--------HHHHHHH
Confidence 55544322 44 5789999999733 223334433443444455555555432 222111 1 1234556
Q ss_pred HHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHH-HhccceEeecCCCCH
Q 000129 1567 IVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKA-TLRHGVGYLHEGLNK 1645 (2114)
Q Consensus 1567 i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~-~l~~gV~~~H~~ls~ 1645 (2114)
+...+..+.++.+.||-..+.+.+-..- ..... ..|.. .....|+.+||.|+.
T Consensus 466 i~~ei~~GrQaY~VcPLIeESE~l~l~~---------------------a~~~~-----~~L~~~~~~~~vgL~HGrm~~ 519 (677)
T COG1200 466 IREEIAKGRQAYVVCPLIEESEKLELQA---------------------AEELY-----EELKSFLPELKVGLVHGRMKP 519 (677)
T ss_pred HHHHHHcCCEEEEEeccccccccchhhh---------------------HHHHH-----HHHHHHcccceeEEEecCCCh
Confidence 6666688999999999887665322000 00000 12222 234569999999999
Q ss_pred HHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEE-EeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEE
Q 000129 1646 TDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVV-MGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVIL 1724 (2114)
Q Consensus 1646 ~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI-~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil 1724 (2114)
.++..|++.|++|+++|||||.+.+.|||+|+.++.| ... .-+-.+.+-|-.||+||. +..+.|+++
T Consensus 520 ~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~A----------ERFGLaQLHQLRGRVGRG--~~qSyC~Ll 587 (677)
T COG1200 520 AEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENA----------ERFGLAQLHQLRGRVGRG--DLQSYCVLL 587 (677)
T ss_pred HHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEech----------hhhhHHHHHHhccccCCC--CcceEEEEE
Confidence 9999999999999999999999999999999887765 211 224578999999999997 789999999
Q ss_pred eecCc
Q 000129 1725 CHAPR 1729 (2114)
Q Consensus 1725 ~~~~~ 1729 (2114)
+.++.
T Consensus 588 ~~~~~ 592 (677)
T COG1200 588 YKPPL 592 (677)
T ss_pred eCCCC
Confidence 99887
No 186
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.92 E-value=1.1e-24 Score=245.67 Aligned_cols=333 Identities=19% Similarity=0.303 Sum_probs=241.4
Q ss_pred CCCcccccChhHHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEccc
Q 000129 1320 QPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPL 1399 (2114)
Q Consensus 1320 ~p~~~~~L~~~~~~~l~~gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Pt 1399 (2114)
.-+|.+.-....+.+.|. ...|+|.|..+++..+.+.+ +++..|||.||++||.+|.+- .+| -+++|+|.
T Consensus 74 d~fpws~e~~~ilk~~f~-lekfrplq~~ain~~ma~ed-~~lil~tgggkslcyqlpal~------adg--~alvi~pl 143 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFH-LEKFRPLQLAAINATMAGED-AFLILPTGGGKSLCYQLPALC------ADG--FALVICPL 143 (695)
T ss_pred CCCCCchHHHHHHHHHhh-HHhcChhHHHHhhhhhccCc-eEEEEeCCCccchhhhhhHHh------cCC--ceEeechh
Confidence 345555555567777776 78999999999999998776 999999999999999999982 355 79999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccc-hhh----c----cCCcEEEEChhhHHH---HHhhhcccccccceeE
Q 000129 1400 EALAKERYRDWEIKFGQGLGMRVVELTGETAMD-LKL----L----EKGQIIISTPEKWDA---LSRRWKQRKYVQQVSL 1467 (2114)
Q Consensus 1400 r~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~-~~~----l----~~~~IIV~TPe~l~~---l~r~~~~~~~l~~v~l 1467 (2114)
.+|+..+.-.++ .+ |+....+....+.. .+. + ..-.+|+.|||++.. ++.+.........+.+
T Consensus 144 islmedqil~lk-ql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~ 218 (695)
T KOG0353|consen 144 ISLMEDQILQLK-QL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKL 218 (695)
T ss_pred HHHHHHHHHHHH-Hh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEE
Confidence 999998887777 33 66666666555443 111 1 122799999999853 3333333335667899
Q ss_pred EEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCC--hhHHHHHhcCCCCceeecCCCCCccCcEEEEe
Q 000129 1468 FIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN--AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQ 1545 (2114)
Q Consensus 1468 iIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n--~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~ 1545 (2114)
|-+||+|+...|+ +.+..-.+.+.-+.+|+ +...+|+++||..| ..|..+.++... .|.|...+....+...+.
T Consensus 219 iaidevhccsqwg-hdfr~dy~~l~ilkrqf-~~~~iigltatatn~vl~d~k~il~ie~--~~tf~a~fnr~nl~yev~ 294 (695)
T KOG0353|consen 219 IAIDEVHCCSQWG-HDFRPDYKALGILKRQF-KGAPIIGLTATATNHVLDDAKDILCIEA--AFTFRAGFNRPNLKYEVR 294 (695)
T ss_pred EeecceeehhhhC-cccCcchHHHHHHHHhC-CCCceeeeehhhhcchhhHHHHHHhHHh--hheeecccCCCCceeEee
Confidence 9999999987543 33333333344344443 57899999999877 346667776654 344444443334444433
Q ss_pred cccccchHHHHHhcCHHHHHHHHHHh---cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhh
Q 000129 1546 GVDITNFEARMQAMTKPTFTAIVQHA---KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDN 1622 (2114)
Q Consensus 1546 ~~~~~~~~~~~~~~~~~~~~~i~~~l---~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 1622 (2114)
.-+.. .. .....|...+ -.+...||||-|++.|+.++..|..
T Consensus 295 qkp~n--~d-------d~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn-------------------------- 339 (695)
T KOG0353|consen 295 QKPGN--ED-------DCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKN-------------------------- 339 (695)
T ss_pred eCCCC--hH-------HHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHh--------------------------
Confidence 22211 11 1122222222 2456789999999999999977632
Q ss_pred hhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhH
Q 000129 1623 IQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTD 1702 (2114)
Q Consensus 1623 i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~ 1702 (2114)
.+...+.+|+.|.+++|.-+-+.+..|+|+|+|||-.+.+|+|-|++++|| |...|.|+..
T Consensus 340 ---------~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvi----------hhsl~ksien 400 (695)
T KOG0353|consen 340 ---------HGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVI----------HHSLPKSIEN 400 (695)
T ss_pred ---------cCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEE----------ecccchhHHH
Confidence 233467899999999999999999999999999999999999999999999 8899999999
Q ss_pred HHH-------------------------------------------hHcccCCCCCCCceEEEEEeec
Q 000129 1703 LLQ-------------------------------------------MMGHASRPLLDNSGKCVILCHA 1727 (2114)
Q Consensus 1703 ~lQ-------------------------------------------r~GRAGR~~~~~~G~~iil~~~ 1727 (2114)
|.| -.|||||. |.+..|++++.-
T Consensus 401 yyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd--~~~a~cilyy~~ 466 (695)
T KOG0353|consen 401 YYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRD--DMKADCILYYGF 466 (695)
T ss_pred HHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccC--CCcccEEEEech
Confidence 999 78999997 778899987754
No 187
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=1.1e-23 Score=270.11 Aligned_cols=322 Identities=14% Similarity=0.098 Sum_probs=214.0
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.|+|+|..+++.++.++ |..+.||+|||++|.+|++..... +. .+++++||++||.|.++.+.. +...+|+
T Consensus 103 ~p~~VQ~~~~~~ll~G~---Iae~~TGeGKTla~~lp~~~~al~---G~--~v~VvTptreLA~qdae~~~~-l~~~lGl 173 (656)
T PRK12898 103 RHFDVQLMGGLALLSGR---LAEMQTGEGKTLTATLPAGTAALA---GL--PVHVITVNDYLAERDAELMRP-LYEALGL 173 (656)
T ss_pred CCChHHHHHHHHHhCCC---eeeeeCCCCcHHHHHHHHHHHhhc---CC--eEEEEcCcHHHHHHHHHHHHH-HHhhcCC
Confidence 68899999999999866 899999999999999999987654 33 899999999999999999884 5556799
Q ss_pred EEEEEcCCcccch-hhccCCcEEEEChhhH-HHHHhhhcc-----------------------cccccceeEEEeccccc
Q 000129 1421 RVVELTGETAMDL-KLLEKGQIIISTPEKW-DALSRRWKQ-----------------------RKYVQQVSLFIIDELHL 1475 (2114)
Q Consensus 1421 ~v~~l~G~~~~~~-~~l~~~~IIV~TPe~l-~~l~r~~~~-----------------------~~~l~~v~liIiDEaH~ 1475 (2114)
+|+.++|+.+... +....++|+|+|...+ ...+|.... ......+.+.||||+|.
T Consensus 174 sv~~i~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDS 253 (656)
T PRK12898 174 TVGCVVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEADS 253 (656)
T ss_pred EEEEEeCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeecccc
Confidence 9999999876553 3345679999999987 223332110 11235578999999995
Q ss_pred cc-CC-C------C----chHHHHHHHHHHHHhhcCC-------------------------------------------
Q 000129 1476 IG-GQ-G------G----PVLEVIVSRMRYIASQVEN------------------------------------------- 1500 (2114)
Q Consensus 1476 l~-~~-~------g----~~le~i~srl~~i~~~~~~------------------------------------------- 1500 (2114)
+. ++ + | .....+......+..++..
T Consensus 254 iLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~~~ 333 (656)
T PRK12898 254 VLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRREEL 333 (656)
T ss_pred eeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHHHHH
Confidence 42 11 1 1 1000111111111000000
Q ss_pred --------------------------------------------------------------------------CceEEE
Q 000129 1501 --------------------------------------------------------------------------KIRIVA 1506 (2114)
Q Consensus 1501 --------------------------------------------------------------------------~~riV~ 1506 (2114)
=.++.|
T Consensus 334 i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~G 413 (656)
T PRK12898 334 VRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAG 413 (656)
T ss_pred HHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHHhc
Confidence 023667
Q ss_pred EcccCCCh-hHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChH
Q 000129 1507 LSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRK 1585 (2114)
Q Consensus 1507 lSATl~n~-~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~ 1585 (2114)
||||.+.. +++.++++... +. .|..+|..-. ....+-......... .+...+......+.|+||||+|++
T Consensus 414 mTGTa~~~~~El~~~y~l~v---v~-IPt~kp~~r~-~~~~~v~~t~~~K~~----aL~~~i~~~~~~~~pvLIft~t~~ 484 (656)
T PRK12898 414 MTGTAREVAGELWSVYGLPV---VR-IPTNRPSQRR-HLPDEVFLTAAAKWA----AVAARVRELHAQGRPVLVGTRSVA 484 (656)
T ss_pred ccCcChHHHHHHHHHHCCCe---EE-eCCCCCccce-ecCCEEEeCHHHHHH----HHHHHHHHHHhcCCCEEEEeCcHH
Confidence 77777653 35666666552 11 2223332111 111110011111111 122223222234688999999999
Q ss_pred HHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEe
Q 000129 1586 YVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVM 1665 (2114)
Q Consensus 1586 ~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVa 1665 (2114)
.++.++..|.. .+..+..+||.++..++..+ .|..+...|+||
T Consensus 485 ~se~L~~~L~~-----------------------------------~gi~~~~Lhg~~~~rE~~ii--~~ag~~g~VlVA 527 (656)
T PRK12898 485 ASERLSALLRE-----------------------------------AGLPHQVLNAKQDAEEAAIV--ARAGQRGRITVA 527 (656)
T ss_pred HHHHHHHHHHH-----------------------------------CCCCEEEeeCCcHHHHHHHH--HHcCCCCcEEEE
Confidence 99999877732 23457899999765555554 455555679999
Q ss_pred cCccccccCCC---CcE-----EEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCc
Q 000129 1666 SSSMCWGVPLT---AHL-----VVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1666 T~~la~Gvdip---~~~-----vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~ 1729 (2114)
|++++||+|++ ++. +|| +++.|.+...|.||+|||||. +.+|.++.+++..+
T Consensus 528 TdmAgRGtDI~l~~~V~~~GGLhVI----------~~d~P~s~r~y~hr~GRTGRq--G~~G~s~~~is~eD 587 (656)
T PRK12898 528 TNMAGRGTDIKLEPGVAARGGLHVI----------LTERHDSARIDRQLAGRCGRQ--GDPGSYEAILSLED 587 (656)
T ss_pred ccchhcccCcCCccchhhcCCCEEE----------EcCCCCCHHHHHHhcccccCC--CCCeEEEEEechhH
Confidence 99999999999 665 888 899999999999999999998 68999999988744
No 188
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.92 E-value=5.6e-24 Score=265.06 Aligned_cols=315 Identities=24% Similarity=0.351 Sum_probs=225.6
Q ss_pred CCCHHHHHHHHHHHcC---C--CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000129 495 QLNRVQSRVYKSALSS---A--DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~---~--~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~ 569 (2114)
+||.-|++++..+... . -|-|++|.-|||||++|+++++..+..+ +++..++||--||.|.+..
T Consensus 262 ~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G-----------~Q~ALMAPTEILA~QH~~~ 330 (677)
T COG1200 262 KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAG-----------YQAALMAPTEILAEQHYES 330 (677)
T ss_pred CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcC-----------CeeEEeccHHHHHHHHHHH
Confidence 7899999999998653 1 2679999999999999999999998754 5899999999999999999
Q ss_pred HHHhhccCCcEEEEEeCCCccChhh-------hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchh
Q 000129 570 LSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPV 642 (2114)
Q Consensus 570 ~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~ 642 (2114)
+.++|.++|++|..++|...-..+. ....+|+|+|.. +.. +...++++.|+||||=|+.+ -.
T Consensus 331 ~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHA----LiQ---d~V~F~~LgLVIiDEQHRFG----V~ 399 (677)
T COG1200 331 LRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHA----LIQ---DKVEFHNLGLVIIDEQHRFG----VH 399 (677)
T ss_pred HHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcch----hhh---cceeecceeEEEEecccccc----HH
Confidence 9999999999999999987655432 246899999976 222 33567889999999999864 22
Q ss_pred HHHHHHHHHHHHhhccc-cccEEEEccccCChHHHHHHHhccccCceEe-ecCCcccccceeEEEeeccCchhHHHHHhh
Q 000129 643 LESIVARTVRQIETTKE-HIRLVGLSATLPNYEDVALFLRVNLEKGLFY-FDNSYRPVPLSQQYIGIQVKKPLQRFQLMN 720 (2114)
Q Consensus 643 le~iv~rl~~~~~~~~~-~~riv~lSATlpn~~dva~~l~~~~~~~~~~-f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~ 720 (2114)
-. ..+...+. .+.++.|||| |=+..++--.-.++...... ....- .|+.-..+ ..... .
T Consensus 400 QR-------~~L~~KG~~~Ph~LvMTAT-PIPRTLAlt~fgDldvS~IdElP~GR--kpI~T~~i--~~~~~----~--- 460 (677)
T COG1200 400 QR-------LALREKGEQNPHVLVMTAT-PIPRTLALTAFGDLDVSIIDELPPGR--KPITTVVI--PHERR----P--- 460 (677)
T ss_pred HH-------HHHHHhCCCCCcEEEEeCC-CchHHHHHHHhccccchhhccCCCCC--CceEEEEe--ccccH----H---
Confidence 11 11223445 6889999999 55556555443333211110 00111 12222222 22211 1
Q ss_pred HHHHHHHH-HHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhc-cCceE
Q 000129 721 DLCYEKVV-AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL-PYGFA 798 (2114)
Q Consensus 721 ~~~~~~i~-~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll-~~gv~ 798 (2114)
.+++.+. +...++|+.+.|+-..+.+++- +..... . ...|+..+ .+.|+
T Consensus 461 -~v~e~i~~ei~~GrQaY~VcPLIeESE~l~--l~~a~~--------------~------------~~~L~~~~~~~~vg 511 (677)
T COG1200 461 -EVYERIREEIAKGRQAYVVCPLIEESEKLE--LQAAEE--------------L------------YEELKSFLPELKVG 511 (677)
T ss_pred -HHHHHHHHHHHcCCEEEEEeccccccccch--hhhHHH--------------H------------HHHHHHHcccceeE
Confidence 1222332 2335889999999887776332 110000 0 01122222 24589
Q ss_pred EecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCC
Q 000129 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDS 878 (2114)
Q Consensus 799 ~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~ 878 (2114)
..||.|+..++..|++.|++|+++|||||.+.+.|||+|+.+++|- +|++. +..+++.|-.||.||.+ .
T Consensus 512 L~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVI----e~AER-----FGLaQLHQLRGRVGRG~--~ 580 (677)
T COG1200 512 LVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVI----ENAER-----FGLAQLHQLRGRVGRGD--L 580 (677)
T ss_pred EEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEE----echhh-----hhHHHHHHhccccCCCC--c
Confidence 9999999999999999999999999999999999999999999774 78775 58999999999999965 6
Q ss_pred ceEEEEEcCCCc
Q 000129 879 YGEGIIITGHSE 890 (2114)
Q Consensus 879 ~G~~iil~~~~e 890 (2114)
.+.|++++..+.
T Consensus 581 qSyC~Ll~~~~~ 592 (677)
T COG1200 581 QSYCVLLYKPPL 592 (677)
T ss_pred ceEEEEEeCCCC
Confidence 799999998765
No 189
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.92 E-value=1.8e-23 Score=268.68 Aligned_cols=323 Identities=15% Similarity=0.133 Sum_probs=209.5
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.|+++|..+...+..+ .|..++||+|||++|.+|++-....+ ..+.+++|+..||.|.++.+..++
T Consensus 56 ~p~~vQlig~~~l~~G---~Iaem~TGeGKTLva~lpa~l~aL~G-----------~~V~VvTpt~~LA~qdae~~~~l~ 121 (745)
T TIGR00963 56 RPFDVQLIGGIALHKG---KIAEMKTGEGKTLTATLPAYLNALTG-----------KGVHVVTVNDYLAQRDAEWMGQVY 121 (745)
T ss_pred CccchHHhhhhhhcCC---ceeeecCCCccHHHHHHHHHHHHHhC-----------CCEEEEcCCHHHHHHHHHHHHHHh
Confidence 6788898888765443 39999999999999999995443332 158999999999999999999999
Q ss_pred ccCCcEEEEEeCCCccChh-hhccceEEEcCHhHH--HHHHhcc---CCCcccccccEEEEeccccccc--CCchhHH--
Q 000129 575 QMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW--DIITRKS---GDRTYTQLVKLLIIDEIHLLHD--NRGPVLE-- 644 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~-~~~~~~IiV~TPek~--d~l~r~~---~~~~~l~~v~liIiDEaH~l~d--~rg~~le-- 644 (2114)
..+|++|+.++|+.+...+ ..-.++|+|+||.++ |.+..+. .....++.++++||||+|.++- .|.|.+-
T Consensus 122 ~~LGLsv~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg 201 (745)
T TIGR00963 122 RFLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISG 201 (745)
T ss_pred ccCCCeEEEEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcC
Confidence 9999999999998775443 234689999999986 6665442 1234568899999999997742 2222111
Q ss_pred ------HHH---HHHHHHHhhc-----cccc-------------------------------------------------
Q 000129 645 ------SIV---ARTVRQIETT-----KEHI------------------------------------------------- 661 (2114)
Q Consensus 645 ------~iv---~rl~~~~~~~-----~~~~------------------------------------------------- 661 (2114)
.+. ..+.+.+... ...-
T Consensus 202 ~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~d 281 (745)
T TIGR00963 202 PAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVD 281 (745)
T ss_pred CCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCc
Confidence 111 1111111100 0011
Q ss_pred ------------------------------------------------------------cEEEEccccCChHHHHHHHh
Q 000129 662 ------------------------------------------------------------RLVGLSATLPNYEDVALFLR 681 (2114)
Q Consensus 662 ------------------------------------------------------------riv~lSATlpn~~dva~~l~ 681 (2114)
++.|||.|... +-.+|..
T Consensus 282 YiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~t--e~~E~~~ 359 (745)
T TIGR00963 282 YIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKT--EEEEFEK 359 (745)
T ss_pred EEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHH--HHHHHHH
Confidence 22222333211 0111111
Q ss_pred ccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhccc
Q 000129 682 VNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALEND 761 (2114)
Q Consensus 682 ~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~ 761 (2114)
.. .-. +..-+..+|+.....-..+. .....+..++ +.+....+..+.|+||||+|...++.++..|...++..
T Consensus 360 iY-~l~-vv~IPtnkp~~R~d~~d~i~-~t~~~k~~ai---~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~- 432 (745)
T TIGR00963 360 IY-NLE-VVVVPTNRPVIRKDLSDLVY-KTEEEKWKAV---VDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPH- 432 (745)
T ss_pred Hh-CCC-EEEeCCCCCeeeeeCCCeEE-cCHHHHHHHH---HHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCe-
Confidence 10 000 11112222221110000000 0011122222 12222234457899999999999999999998765433
Q ss_pred ccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCc---
Q 000129 762 TLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPA--- 838 (2114)
Q Consensus 762 ~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~--- 838 (2114)
..+||. +.+|+..+..|+.+...|+|||++++||+|++.
T Consensus 433 ------------------------------------~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V 474 (745)
T TIGR00963 433 ------------------------------------NVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEV 474 (745)
T ss_pred ------------------------------------EEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccch
Confidence 345888 789999999999999999999999999999998
Q ss_pred ----eEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCc
Q 000129 839 ----HTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890 (2114)
Q Consensus 839 ----v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e 890 (2114)
..+||+ |+.+. |...+.|+.|||||.| .+|.+..+.+..+
T Consensus 475 ~~~GGl~VI~----t~~p~------s~ri~~q~~GRtGRqG--~~G~s~~~ls~eD 518 (745)
T TIGR00963 475 KELGGLYVIG----TERHE------SRRIDNQLRGRSGRQG--DPGSSRFFLSLED 518 (745)
T ss_pred hhcCCcEEEe----cCCCC------cHHHHHHHhccccCCC--CCcceEEEEeccH
Confidence 558998 55554 7788999999999988 7799888887654
No 190
>PRK09694 helicase Cas3; Provisional
Probab=99.92 E-value=4.3e-23 Score=275.23 Aligned_cols=315 Identities=20% Similarity=0.211 Sum_probs=194.6
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
+...|+|+|..+... -.+...+||.||||+|||.+++.++.+.+..+. ..+++|..||+++++++++++.
T Consensus 283 ~~~~p~p~Q~~~~~~-~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~---------~~gi~~aLPT~Atan~m~~Rl~ 352 (878)
T PRK09694 283 NGYQPRQLQTLVDAL-PLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGL---------ADSIIFALPTQATANAMLSRLE 352 (878)
T ss_pred CCCCChHHHHHHHhh-ccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCC---------CCeEEEECcHHHHHHHHHHHHH
Confidence 345899999988543 234567999999999999999887776554321 2379999999999999999988
Q ss_pred HhhccC--CcEEEEEeCCCccCh-----------------------hhh-------ccceEEEcCHhHH-HHHHhccCCC
Q 000129 572 NRLQMY--DVKVRELSGDQTLTR-----------------------QQI-------EETQIIVTTPEKW-DIITRKSGDR 618 (2114)
Q Consensus 572 ~~~~~~--gi~v~~l~Gd~~~~~-----------------------~~~-------~~~~IiV~TPek~-d~l~r~~~~~ 618 (2114)
+.+... ..++..++|...+.. +.. --.+|+|||+.++ ..+.....
T Consensus 353 ~~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh-- 430 (878)
T PRK09694 353 ALASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKH-- 430 (878)
T ss_pred HHHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccch--
Confidence 644321 346777787654221 001 1268999999985 23332211
Q ss_pred cccccc----cEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEccccCCh--HHHHHHHhcc-c-c----C
Q 000129 619 TYTQLV----KLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY--EDVALFLRVN-L-E----K 686 (2114)
Q Consensus 619 ~~l~~v----~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~--~dva~~l~~~-~-~----~ 686 (2114)
.+++.+ ++|||||+|.+- +.+..++.++++.... ...++|+||||+|.. +.+..-++.. . . .
T Consensus 431 ~~lR~~~La~svvIiDEVHAyD----~ym~~lL~~~L~~l~~--~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~Y 504 (878)
T PRK09694 431 RFIRGFGLGRSVLIVDEVHAYD----AYMYGLLEAVLKAQAQ--AGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAY 504 (878)
T ss_pred HHHHHHhhccCeEEEechhhCC----HHHHHHHHHHHHHHHh--cCCcEEEEeCCCCHHHHHHHHHHhcccccccccccc
Confidence 122222 589999999873 2333444445444333 456799999999852 1111111110 0 0 0
Q ss_pred ceE---------eecCCcc----cccceeEEEeeccCchhHHHHHhhHHHHHHHHHH-hCCCeEEEEecChHHHHHHHHH
Q 000129 687 GLF---------YFDNSYR----PVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAV-AGKHQVLIFVHSRKETAKTARA 752 (2114)
Q Consensus 687 ~~~---------~f~~~~r----pv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~vLVFv~sr~~~~~~a~~ 752 (2114)
+.. .+..... +.+....+........ .-...+.+.+.+. ..++++||||||++.|+.+++.
T Consensus 505 Plvt~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~-----~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~ 579 (878)
T PRK09694 505 PLITWRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADM-----LPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQR 579 (878)
T ss_pred ccccccccccceeeeccccccccCcceEEEEEeeccccc-----cCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHH
Confidence 000 0000000 0111000000000000 0011233334333 3478999999999999999999
Q ss_pred HHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHH----HHHHHH-hCCC---ceEE
Q 000129 753 IRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ----LVEDLF-GDGH---VQVL 824 (2114)
Q Consensus 753 L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~----~v~~~F-~~g~---i~VL 824 (2114)
|++.+.. ...+..+||+++..+|. .+++.| ++|. .+||
T Consensus 580 L~~~~~~----------------------------------~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~IL 625 (878)
T PRK09694 580 LKELNNT----------------------------------QVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRIL 625 (878)
T ss_pred HHhhCCC----------------------------------CceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEE
Confidence 9754211 02367889999999995 466677 6666 4799
Q ss_pred EechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCC
Q 000129 825 VSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY 876 (2114)
Q Consensus 825 VaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~ 876 (2114)
|||+++++|||++ .+++|... .++..++||+||+||.+.
T Consensus 626 VaTQViE~GLDId-~DvlItdl------------aPidsLiQRaGR~~R~~~ 664 (878)
T PRK09694 626 VATQVVEQSLDLD-FDWLITQL------------CPVDLLFQRLGRLHRHHR 664 (878)
T ss_pred EECcchhheeecC-CCeEEECC------------CCHHHHHHHHhccCCCCC
Confidence 9999999999995 68888521 145689999999999865
No 191
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.92 E-value=1.3e-23 Score=290.33 Aligned_cols=284 Identities=18% Similarity=0.192 Sum_probs=186.5
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000129 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2114)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (2114)
..+|+++|..+++.++.+. +++++||||||||. |.+++...+... +.+++||+||++||.|+++.+.+
T Consensus 76 g~~p~~iQ~~~i~~il~G~-d~vi~ApTGsGKT~-f~l~~~~~l~~~----------g~~vLIL~PTreLa~Qi~~~l~~ 143 (1171)
T TIGR01054 76 GSEPWSIQKMWAKRVLRGD-SFAIIAPTGVGKTT-FGLAMSLFLAKK----------GKRCYIILPTTLLVIQVAEKISS 143 (1171)
T ss_pred CCCCcHHHHHHHHHHhCCC-eEEEECCCCCCHHH-HHHHHHHHHHhc----------CCeEEEEeCHHHHHHHHHHHHHH
Confidence 3479999999999998875 59999999999997 556666555331 35899999999999999999999
Q ss_pred hhccCCcEE---EEEeCCCccChhh-------hccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-C---
Q 000129 573 RLQMYDVKV---RELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N--- 638 (2114)
Q Consensus 573 ~~~~~gi~v---~~l~Gd~~~~~~~-------~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~--- 638 (2114)
+....|+.+ +.++|+.+...+. ...++|+|+||+++........ ..++++|+||||.+.+ .
T Consensus 144 l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~-----~~~~~iVvDEaD~~L~~~k~v 218 (1171)
T TIGR01054 144 LAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG-----PKFDFIFVDDVDALLKASKNV 218 (1171)
T ss_pred HHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc-----CCCCEEEEeChHhhhhccccH
Confidence 887777654 3577887654431 1358999999998733222211 1789999999999976 2
Q ss_pred --------Cch-hHHHHHHHH---------------HHHHhhcccccc--EEEEccccCChHHHH-HHHhccccCceEee
Q 000129 639 --------RGP-VLESIVART---------------VRQIETTKEHIR--LVGLSATLPNYEDVA-LFLRVNLEKGLFYF 691 (2114)
Q Consensus 639 --------rg~-~le~iv~rl---------------~~~~~~~~~~~r--iv~lSATlpn~~dva-~~l~~~~~~~~~~f 691 (2114)
+.+ .++.++..+ ....+..+...| ++.+|||..+. .+. .+++... .+..
T Consensus 219 d~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~-~~~~~l~r~ll---~~~v 294 (1171)
T TIGR01054 219 DKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPR-GKRAKLFRELL---GFEV 294 (1171)
T ss_pred HHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCcc-ccHHHHccccc---ceEe
Confidence 222 233332211 111112223333 67789994322 222 2222111 1111
Q ss_pred cCCc-ccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecCh---HHHHHHHHHHHHHhhccccccccc
Q 000129 692 DNSY-RPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSR---KETAKTARAIRDTALENDTLGRFL 767 (2114)
Q Consensus 692 ~~~~-rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr---~~~~~~a~~L~~~~~~~~~l~~~l 767 (2114)
.... ..-.+.+.++.. .. .... +.+ +.... +.++||||+|+ +.|..++..|.+.++
T Consensus 295 ~~~~~~~r~I~~~~~~~--~~---~~~~----L~~-ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~--------- 354 (1171)
T TIGR01054 295 GGGSDTLRNVVDVYVED--ED---LKET----LLE-IVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHGV--------- 354 (1171)
T ss_pred cCccccccceEEEEEec--cc---HHHH----HHH-HHHHc-CCCEEEEEeccccHHHHHHHHHHHHhCCc---------
Confidence 1111 111222333211 11 1111 112 22222 46899999999 999999999876543
Q ss_pred ccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEe----chHhhhhcCCCc-eEEE
Q 000129 768 KEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVS----TATLAWGVNLPA-HTVI 842 (2114)
Q Consensus 768 ~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVa----T~tla~GVdlP~-v~vV 842 (2114)
.++.+||+|+. .+++.|++|+++|||| |++++||+|+|+ +++|
T Consensus 355 ----------------------------~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~v 402 (1171)
T TIGR01054 355 ----------------------------KAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYA 402 (1171)
T ss_pred ----------------------------eEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEE
Confidence 24567999973 6889999999999999 489999999999 8999
Q ss_pred EecceeccCCC
Q 000129 843 IKGTQIYNPEK 853 (2114)
Q Consensus 843 I~~~~~yd~~~ 853 (2114)
|+ |+.|+
T Consensus 403 I~----~~~P~ 409 (1171)
T TIGR01054 403 VF----LGVPK 409 (1171)
T ss_pred EE----ECCCC
Confidence 99 88775
No 192
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.92 E-value=2.4e-22 Score=263.14 Aligned_cols=403 Identities=18% Similarity=0.254 Sum_probs=282.1
Q ss_pred CCCHHHHHHHHHHHc---CC--CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000129 1341 HFNPIQTQVFTVLYN---TD--DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~---~~--~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~ 1415 (2114)
.-||-|..||+.+.+ +. -+=||||.-|-|||.+|+=|++..... ++ ++.++|||.-||.|.|+.|+++|.
T Consensus 594 eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~---GK--QVAvLVPTTlLA~QHy~tFkeRF~ 668 (1139)
T COG1197 594 EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD---GK--QVAVLVPTTLLAQQHYETFKERFA 668 (1139)
T ss_pred cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC---CC--eEEEEcccHHhHHHHHHHHHHHhc
Confidence 579999999999874 22 247999999999999999998887766 44 999999999999999999999998
Q ss_pred CCCCcEEEEEcCCcccc-----hhhccCC--cEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHH
Q 000129 1416 QGLGMRVVELTGETAMD-----LKLLEKG--QIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 1488 (2114)
Q Consensus 1416 ~~~g~~v~~l~G~~~~~-----~~~l~~~--~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~ 1488 (2114)
.. +++|..+..-.+.. .+.++.+ ||||+|-. ++. ....+++++|+||||-|+.|-. --
T Consensus 669 ~f-PV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr----LL~---kdv~FkdLGLlIIDEEqRFGVk-------~K 733 (1139)
T COG1197 669 GF-PVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR----LLS---KDVKFKDLGLLIIDEEQRFGVK-------HK 733 (1139)
T ss_pred CC-CeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH----hhC---CCcEEecCCeEEEechhhcCcc-------HH
Confidence 75 89999988755443 3445555 99999943 222 3556889999999999998732 12
Q ss_pred HHHHHHHhhcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHH
Q 000129 1489 SRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIV 1568 (2114)
Q Consensus 1489 srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 1568 (2114)
.+++.+ ..++-++-||||+-.-.-=....|...-.++..+|..| .|+..++..++.. -+..+|.
T Consensus 734 EkLK~L----r~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R-~pV~T~V~~~d~~-----------~ireAI~ 797 (1139)
T COG1197 734 EKLKEL----RANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDR-LPVKTFVSEYDDL-----------LIREAIL 797 (1139)
T ss_pred HHHHHH----hccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCC-cceEEEEecCChH-----------HHHHHHH
Confidence 334444 56899999999974322222344555555666555544 4777777665422 2345666
Q ss_pred HHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHH
Q 000129 1569 QHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQ 1648 (2114)
Q Consensus 1569 ~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR 1648 (2114)
..+..+|++-..+|..+....++..|..... ...|++-||.|+..+-
T Consensus 798 REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVP---------------------------------EarI~vaHGQM~e~eL 844 (1139)
T COG1197 798 RELLRGGQVFYVHNRVESIEKKAERLRELVP---------------------------------EARIAVAHGQMREREL 844 (1139)
T ss_pred HHHhcCCEEEEEecchhhHHHHHHHHHHhCC---------------------------------ceEEEEeecCCCHHHH
Confidence 7778999999999999999999987754332 2359999999999999
Q ss_pred HHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecC
Q 000129 1649 EVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP 1728 (2114)
Q Consensus 1649 ~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~ 1728 (2114)
+.++..|-+|+.+|||||.+.+.|||+|+.+.+|. ++.--+-.+++.|..||+||. +..|.||+++.+.
T Consensus 845 E~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiII---------e~AD~fGLsQLyQLRGRVGRS--~~~AYAYfl~p~~ 913 (1139)
T COG1197 845 EEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIII---------ERADKFGLAQLYQLRGRVGRS--NKQAYAYFLYPPQ 913 (1139)
T ss_pred HHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEE---------eccccccHHHHHHhccccCCc--cceEEEEEeecCc
Confidence 99999999999999999999999999997666552 344446789999999999998 8999999999976
Q ss_pred c---HHHHHHHHHhcc-------------CCCCcc---ccCCCcc-chH----HHHHHHHHHHHHHHHHCCCceecC-CC
Q 000129 1729 R---KEYYKKFLRLTQ-------------NPNYYN---LQGVSHR-HLS----DHLSELVENTISDLEASKCIIIEE-DM 1783 (2114)
Q Consensus 1729 ~---~~~~~~~lRl~~-------------nP~~y~---l~~~s~~-~l~----~~lselve~~l~~L~~~~~I~~~~-~~ 1783 (2114)
+ +...+++.-+.. +-...| +.|..+. ++. +.-.++++.++..|....-+.... +.
T Consensus 914 k~lT~~A~kRL~aI~~~~~LGaGf~lA~~DLeIRGaGNlLG~eQSG~I~~VGf~LY~~mLeeAI~~lk~~~e~~~~~~~~ 993 (1139)
T COG1197 914 KALTEDAEKRLEAIASFTELGAGFKLAMHDLEIRGAGNLLGEEQSGHIESVGFDLYMEMLEEAIAALKGSLEVLEEEKEV 993 (1139)
T ss_pred cccCHHHHHHHHHHHhhhhcCchHHHHhcchhccccccccCccccCchheecHHHHHHHHHHHHHHHhcCCcccccCCCe
Confidence 4 344444442222 112222 2222111 121 224688999999998833332111 11
Q ss_pred ccccCcccchhhhcccCHhHHH-HHHhhcCCCCChhhHHHHH
Q 000129 1784 DLSPSNHGMIASYYYISYTTIE-RFSSSLTPKTRMKGLLEVL 1824 (2114)
Q Consensus 1784 ~~~~t~lG~i~s~y~i~~~T~~-~f~~sl~~~~~~~~iL~il 1824 (2114)
.+..---+.|- ..||.-...+ .|+..+....+..++-++-
T Consensus 994 eIdL~~~a~iP-e~YI~d~~~rl~~YkRi~~~~s~~el~~i~ 1034 (1139)
T COG1197 994 EIDLPVPAFIP-EDYIPDDNLRLELYKRLANAESEEELEEIK 1034 (1139)
T ss_pred eEecCCCCcCC-hhhccCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 23222224443 4455544444 5666677666666555554
No 193
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=4.1e-23 Score=270.18 Aligned_cols=325 Identities=17% Similarity=0.138 Sum_probs=208.6
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.|+++|..+...+..+ .|+.+.||+|||++|.+|++..... +. .+.+++||++||.|.+..+.. +...+|+
T Consensus 78 ~p~~vQl~~~~~l~~G---~Iaem~TGeGKTL~a~lp~~l~al~---G~--~v~VvTpt~~LA~qd~e~~~~-l~~~lGl 148 (790)
T PRK09200 78 RPYDVQLIGALVLHEG---NIAEMQTGEGKTLTATMPLYLNALE---GK--GVHLITVNDYLAKRDAEEMGQ-VYEFLGL 148 (790)
T ss_pred CCchHHHHhHHHHcCC---ceeeecCCCcchHHHHHHHHHHHHc---CC--CeEEEeCCHHHHHHHHHHHHH-HHhhcCC
Confidence 7888998888777543 2999999999999999999865554 33 799999999999999998884 5556799
Q ss_pred EEEEEcCCcc-cc-hhhccCCcEEEEChhhH-HHHHhh-h---cccccccceeEEEeccccccc-CC-C------Cch--
Q 000129 1421 RVVELTGETA-MD-LKLLEKGQIIISTPEKW-DALSRR-W---KQRKYVQQVSLFIIDELHLIG-GQ-G------GPV-- 1483 (2114)
Q Consensus 1421 ~v~~l~G~~~-~~-~~~l~~~~IIV~TPe~l-~~l~r~-~---~~~~~l~~v~liIiDEaH~l~-~~-~------g~~-- 1483 (2114)
+|+.++|+.+ .. .+....++|+++||+.+ ..+++. . .....+..+.++|+||||.+. ++ + |+.
T Consensus 149 ~v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~~~ 228 (790)
T PRK09200 149 TVGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRV 228 (790)
T ss_pred eEEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCCCcc
Confidence 9999999887 43 44455679999999998 233332 1 112356789999999999553 21 2 111
Q ss_pred HHHHHHHHHHHHhhcCC--------CceEEEEccc----------CCC---h--hHHHHHhcCC----------------
Q 000129 1484 LEVIVSRMRYIASQVEN--------KIRIVALSTS----------LAN---A--KDLGEWIGAT---------------- 1524 (2114)
Q Consensus 1484 le~i~srl~~i~~~~~~--------~~riV~lSAT----------l~n---~--~dla~wl~~~---------------- 1524 (2114)
-..+......+..++.. ..+.+.++.. ++| . ..+..|+...
T Consensus 229 ~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYiV~ 308 (790)
T PRK09200 229 QSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIVY 308 (790)
T ss_pred ccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEEEE
Confidence 01112122222222111 1222222210 000 0 0111222100
Q ss_pred ----------------------------------------------------------------------------CCce
Q 000129 1525 ----------------------------------------------------------------------------SHGL 1528 (2114)
Q Consensus 1525 ----------------------------------------------------------------------------~~~~ 1528 (2114)
.-.+
T Consensus 309 ~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~l~v 388 (790)
T PRK09200 309 DGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNMEV 388 (790)
T ss_pred CCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHhCCcE
Confidence 0001
Q ss_pred eecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccc
Q 000129 1529 FNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAF 1608 (2114)
Q Consensus 1529 ~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~ 1608 (2114)
+.. |..+|+...- ....-........ ..+...+......+.|+||||+|++.+..++..|..
T Consensus 389 ~~I-Pt~kp~~r~d-~~~~i~~~~~~K~----~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~------------ 450 (790)
T PRK09200 389 VQI-PTNRPIIRID-YPDKVFVTLDEKY----KAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDE------------ 450 (790)
T ss_pred EEC-CCCCCccccc-CCCeEEcCHHHHH----HHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHH------------
Confidence 111 1112211100 0000000000011 112222222224688999999999999988877632
Q ss_pred cCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCC---CCcE-----E
Q 000129 1609 LLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPL---TAHL-----V 1680 (2114)
Q Consensus 1609 l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdi---p~~~-----v 1680 (2114)
.+..+..+||.++..++..+...+..| +|+|||++++||+|+ |++. +
T Consensus 451 -----------------------~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~ 505 (790)
T PRK09200 451 -----------------------AGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLA 505 (790)
T ss_pred -----------------------CCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcE
Confidence 234578999999999998888887776 799999999999999 6887 9
Q ss_pred EEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCc
Q 000129 1681 VVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1681 VI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~ 1729 (2114)
|| +++.|.+...|.||+|||||. |.+|.++.+++..+
T Consensus 506 VI----------~~d~p~s~r~y~qr~GRtGR~--G~~G~s~~~is~eD 542 (790)
T PRK09200 506 VI----------GTERMESRRVDLQLRGRSGRQ--GDPGSSQFFISLED 542 (790)
T ss_pred EE----------eccCCCCHHHHHHhhccccCC--CCCeeEEEEEcchH
Confidence 99 899999999999999999998 78999999987644
No 194
>PRK09694 helicase Cas3; Provisional
Probab=99.91 E-value=1.2e-22 Score=271.10 Aligned_cols=316 Identities=17% Similarity=0.193 Sum_probs=195.3
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000129 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~ 1418 (2114)
...|+|+|+.+-... .+...++|.||||+|||.+++.++.+.+.. ...+ +++|..||+++++++++++++.+....
T Consensus 284 ~~~p~p~Q~~~~~~~-~~pgl~ileApTGsGKTEAAL~~A~~l~~~-~~~~--gi~~aLPT~Atan~m~~Rl~~~~~~~f 359 (878)
T PRK09694 284 GYQPRQLQTLVDALP-LQPGLTIIEAPTGSGKTEAALAYAWRLIDQ-GLAD--SIIFALPTQATANAMLSRLEALASKLF 359 (878)
T ss_pred CCCChHHHHHHHhhc-cCCCeEEEEeCCCCCHHHHHHHHHHHHHHh-CCCC--eEEEECcHHHHHHHHHHHHHHHHHHhc
Confidence 458999999885432 346679999999999999998777655544 2233 899999999999999999875332221
Q ss_pred -CcEEEEEcCCcccch-----------------------hhcc-------CCcEEEEChhhHHHHHhhhcccccccce--
Q 000129 1419 -GMRVVELTGETAMDL-----------------------KLLE-------KGQIIISTPEKWDALSRRWKQRKYVQQV-- 1465 (2114)
Q Consensus 1419 -g~~v~~l~G~~~~~~-----------------------~~l~-------~~~IIV~TPe~l~~l~r~~~~~~~l~~v-- 1465 (2114)
..++..++|....+. ..+. -++|+|||+.++..-.-..+ ...++.+
T Consensus 360 ~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~k-h~~lR~~~L 438 (878)
T PRK09694 360 PSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVK-HRFIRGFGL 438 (878)
T ss_pred CCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccc-hHHHHHHhh
Confidence 246777777543110 1111 25999999999763221111 1122222
Q ss_pred --eEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCChh--HHHHHhcCCCC----c---ee-----
Q 000129 1466 --SLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAK--DLGEWIGATSH----G---LF----- 1529 (2114)
Q Consensus 1466 --~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~--dla~wl~~~~~----~---~~----- 1529 (2114)
++|||||+|.+.......++.+ ++.+ . ....++|+||||+|... .+.+-++.... . .+
T Consensus 439 a~svvIiDEVHAyD~ym~~lL~~~---L~~l-~--~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~ 512 (878)
T PRK09694 439 GRSVLIVDEVHAYDAYMYGLLEAV---LKAQ-A--QAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGV 512 (878)
T ss_pred ccCeEEEechhhCCHHHHHHHHHH---HHHH-H--hcCCcEEEEeCCCCHHHHHHHHHHhcccccccccccccccccccc
Confidence 5899999998843222222222 2322 2 23567999999998632 33332222100 0 00
Q ss_pred ----ecCCCC----CccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccC
Q 000129 1530 ----NFPPGV----RPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMD 1601 (2114)
Q Consensus 1530 ----~f~~~~----rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~ 1601 (2114)
.+.... .+.+..+.+........ .........+...+..++++||||||++.|..+++.|.....
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~-----~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~-- 585 (878)
T PRK09694 513 NGAQRFDLSAHPEQLPARFTIQLEPICLADM-----LPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNN-- 585 (878)
T ss_pred ccceeeeccccccccCcceEEEEEeeccccc-----cCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCC--
Confidence 000000 01111111111100000 001233445555556788999999999999999987743210
Q ss_pred CcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHH----HHHHHH-hcCC---ceEEEecCcccccc
Q 000129 1602 GDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQE----VVSALF-EAGK---IKVCVMSSSMCWGV 1673 (2114)
Q Consensus 1602 ~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~----~v~~~F-~~g~---i~VLVaT~~la~Gv 1673 (2114)
-...+..+||.++..+|. .+++.| ++|+ .+|||||+++++||
T Consensus 586 ------------------------------~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GL 635 (878)
T PRK09694 586 ------------------------------TQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSL 635 (878)
T ss_pred ------------------------------CCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhhee
Confidence 012488999999999994 567778 6666 47999999999999
Q ss_pred CCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCC
Q 000129 1674 PLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLL 1715 (2114)
Q Consensus 1674 dip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~ 1715 (2114)
|++. .++| . ...|+..++||+||+||.+.
T Consensus 636 DId~-DvlI----------t--dlaPidsLiQRaGR~~R~~~ 664 (878)
T PRK09694 636 DLDF-DWLI----------T--QLCPVDLLFQRLGRLHRHHR 664 (878)
T ss_pred ecCC-CeEE----------E--CCCCHHHHHHHHhccCCCCC
Confidence 9975 5666 1 23468899999999999864
No 195
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.91 E-value=2.5e-23 Score=268.91 Aligned_cols=427 Identities=18% Similarity=0.209 Sum_probs=283.9
Q ss_pred CCCCCHHHHHHHHHHHcC---CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000129 1339 FKHFNPIQTQVFTVLYNT---DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~---~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~ 1415 (2114)
...+|+-|..++..+..+ ....++.+.||||||.+|+-+|-+.+.+ ++ .+|+++|-.+|..|+.++|+.+|+
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~---Gk--qvLvLVPEI~Ltpq~~~rf~~rFg 270 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ---GK--QVLVLVPEIALTPQLLARFKARFG 270 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc---CC--EEEEEeccccchHHHHHHHHHHhC
Confidence 347999999999998765 4679999999999999999888888877 45 899999999999999999999996
Q ss_pred CCCCcEEEEEcCCcccch-----hhc--cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccc--cCCCCchH--
Q 000129 1416 QGLGMRVVELTGETAMDL-----KLL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI--GGQGGPVL-- 1484 (2114)
Q Consensus 1416 ~~~g~~v~~l~G~~~~~~-----~~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l--~~~~g~~l-- 1484 (2114)
.+|++++++.+... ... .++.|+|+| +..-...++++++|||||-|-- ..+.++.|
T Consensus 271 ----~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGt---------RSAlF~Pf~~LGLIIvDEEHD~sYKq~~~prYhA 337 (730)
T COG1198 271 ----AKVAVLHSGLSPGERYRVWRRARRGEARVVIGT---------RSALFLPFKNLGLIIVDEEHDSSYKQEDGPRYHA 337 (730)
T ss_pred ----CChhhhcccCChHHHHHHHHHHhcCCceEEEEe---------chhhcCchhhccEEEEeccccccccCCcCCCcCH
Confidence 47889998877642 222 345899999 5455668999999999999933 33344443
Q ss_pred -HHHHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhcCCCC--ceeecCCCC-CccCcEEEEecccccchHHHHHhcC
Q 000129 1485 -EVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSH--GLFNFPPGV-RPVPLEIHIQGVDITNFEARMQAMT 1560 (2114)
Q Consensus 1485 -e~i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~~~--~~~~f~~~~-rpv~l~~~~~~~~~~~~~~~~~~~~ 1560 (2114)
++.+-|-+ ..++.+|+-|||++ +..|...... ..+.+.... +..+..+.+........... ....
T Consensus 338 RdvA~~Ra~------~~~~pvvLgSATPS----LES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~-~~lS 406 (730)
T COG1198 338 RDVAVLRAK------KENAPVVLGSATPS----LESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETG-RSLS 406 (730)
T ss_pred HHHHHHHHH------HhCCCEEEecCCCC----HHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccC-ccCC
Confidence 22222222 34789999999985 4445444332 222332222 22234444443332221111 1167
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCChHHHHHH-----HH-------------------HHHHhhccCCcccccccCCCcccc
Q 000129 1561 KPTFTAIVQHAKNEKPALVFVPSRKYVRLT-----AV-------------------DLMTYSSMDGDQKSAFLLWPAEEV 1616 (2114)
Q Consensus 1561 ~~~~~~i~~~l~~~~~~LVFv~sr~~a~~l-----a~-------------------~L~~~~~~~~~~~~~~l~~~~~~l 1616 (2114)
..++..|.+.+..+.++|+|+|.|.-+-.+ .. ..|++|.........|..|..+.+
T Consensus 407 ~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L 486 (730)
T COG1198 407 PALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHL 486 (730)
T ss_pred HHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCee
Confidence 888999999999999999999999743211 11 124455544333333666655544
Q ss_pred hh---hHhhhhHHHHHHHhccceEeecCCCCHH--HHHHHHHHHhcCCceEEEecCccccccCCCCcEEEE-E--eeeEe
Q 000129 1617 EP---FIDNIQEEMLKATLRHGVGYLHEGLNKT--DQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVV-M--GTQYY 1688 (2114)
Q Consensus 1617 ~~---~~~~i~d~~L~~~l~~gV~~~H~~ls~~--dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI-~--gt~~y 1688 (2114)
.. -.+++.++.-..+....|..+.++.+.. .-+..+..|.+|+++|||.|++++.|.|+|+++.|. . ++..+
T Consensus 487 ~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~ 566 (730)
T COG1198 487 RAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLG 566 (730)
T ss_pred EEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhc
Confidence 43 3566666666666688899998886653 356789999999999999999999999999998775 2 22222
Q ss_pred cCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHHHHH---------------HhccCCCCccccCCCc
Q 000129 1689 DGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFL---------------RLTQNPNYYNLQGVSH 1753 (2114)
Q Consensus 1689 d~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~~~l---------------Rl~~nP~~y~l~~~s~ 1753 (2114)
.+. -+........+.|-+|||||. +..|.+++.+..++...++..+ +....|+|+.+..+..
T Consensus 567 ~~D-fRA~Er~fqll~QvaGRAgR~--~~~G~VvIQT~~P~hp~i~~~~~~dy~~F~~~El~~Rk~~~~PPf~~l~~v~~ 643 (730)
T COG1198 567 SPD-FRASERTFQLLMQVAGRAGRA--GKPGEVVIQTYNPDHPAIQALKRGDYEAFYEQELAERKELGLPPFSRLAAVIA 643 (730)
T ss_pred CCC-cchHHHHHHHHHHHHhhhccC--CCCCeEEEEeCCCCcHHHHHHHhcCHHHHHHHHHHHHHhcCCCChhhheeeEe
Confidence 222 233344577899999999997 7899999999999855444333 5788999998766533
Q ss_pred cch-HHHHHHHHHHHHHHHHHCCCceecCCCccccCcccchhhhcc
Q 000129 1754 RHL-SDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYY 1798 (2114)
Q Consensus 1754 ~~l-~~~lselve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~ 1798 (2114)
.+- .+...+.+...-..|....-..+ +-.+..|.++.+++..|-
T Consensus 644 ~~~~~~~~~~~~~~~~~~l~~~~~~~~-~vlGP~~a~~~r~~~~yR 688 (730)
T COG1198 644 SAKNEEKALEFARALRELLKEALPVDV-EVLGPAPAPLAKLAGRYR 688 (730)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcccccc-eeeCCCcchhHHhCCceE
Confidence 322 12222222222223333322211 112345666666666654
No 196
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.91 E-value=9.3e-23 Score=264.08 Aligned_cols=323 Identities=14% Similarity=0.172 Sum_probs=203.3
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.++|+|.|++..+..... .++.++||+|||++|.+|++..... +. .++|++|+++||.|.++.+. .+.+.+|+
T Consensus 68 glrpydVQlig~l~l~~G-~Iaem~TGeGKTLta~Lpa~l~aL~---g~--~V~VVTpn~yLA~Rdae~m~-~l~~~LGL 140 (762)
T TIGR03714 68 GMFPYDVQVLGAIVLHQG-NIAEMKTGEGKTLTATMPLYLNALT---GK--GAMLVTTNDYLAKRDAEEMG-PVYEWLGL 140 (762)
T ss_pred CCCccHHHHHHHHHhcCC-ceeEecCCcchHHHHHHHHHHHhhc---CC--ceEEeCCCHHHHHHHHHHHH-HHHhhcCC
Confidence 457777777776654344 6999999999999999998766554 33 68999999999999998877 56566799
Q ss_pred EEEEEcCCc-----ccc-hhhccCCcEEEEChhhH-HHHHhhh----cccccccceeEEEecccccccC-C-C------C
Q 000129 1421 RVVELTGET-----AMD-LKLLEKGQIIISTPEKW-DALSRRW----KQRKYVQQVSLFIIDELHLIGG-Q-G------G 1481 (2114)
Q Consensus 1421 ~v~~l~G~~-----~~~-~~~l~~~~IIV~TPe~l-~~l~r~~----~~~~~l~~v~liIiDEaH~l~~-~-~------g 1481 (2114)
+|+...++. ..+ .+....++|+++||+++ ..+++.. .....++.+.++|+||||.++- + + |
T Consensus 141 sv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg 220 (762)
T TIGR03714 141 TVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISG 220 (762)
T ss_pred cEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeC
Confidence 998877652 111 23345779999999998 3444331 1123467899999999996632 1 1 1
Q ss_pred ch-H-HHHHHHHHHHHhhcCC--------Cce------------------------------------------------
Q 000129 1482 PV-L-EVIVSRMRYIASQVEN--------KIR------------------------------------------------ 1503 (2114)
Q Consensus 1482 ~~-l-e~i~srl~~i~~~~~~--------~~r------------------------------------------------ 1503 (2114)
+. . ..+...+..+...+.. ..+
T Consensus 221 ~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~d 300 (762)
T TIGR03714 221 APRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKD 300 (762)
T ss_pred CCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCc
Confidence 10 0 0112222122222111 112
Q ss_pred -------------------------------------------------------------EEEEcccCCC-hhHHHHHh
Q 000129 1504 -------------------------------------------------------------IVALSTSLAN-AKDLGEWI 1521 (2114)
Q Consensus 1504 -------------------------------------------------------------iV~lSATl~n-~~dla~wl 1521 (2114)
+.|||.|... ..+|.+..
T Consensus 301 YiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY 380 (762)
T TIGR03714 301 YVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETY 380 (762)
T ss_pred eEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHHh
Confidence 2223333211 01111111
Q ss_pred cCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccC
Q 000129 1522 GATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMD 1601 (2114)
Q Consensus 1522 ~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~ 1601 (2114)
+.. ++. -|..+|+...-. ...-........ ......+.+....+.|+||||+|+..++.++..|..
T Consensus 381 ~l~---v~~-IPt~kp~~r~d~-~d~i~~~~~~K~----~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~----- 446 (762)
T TIGR03714 381 SLS---VVK-IPTNKPIIRIDY-PDKIYATLPEKL----MATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLR----- 446 (762)
T ss_pred CCC---EEE-cCCCCCeeeeeC-CCeEEECHHHHH----HHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHH-----
Confidence 110 111 122222211100 000000001111 112222333335688999999999999888876632
Q ss_pred CcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCC-----
Q 000129 1602 GDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLT----- 1676 (2114)
Q Consensus 1602 ~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip----- 1676 (2114)
.+..+..+||.+++.+|..+...++.| +|+|||++++||+|+|
T Consensus 447 ------------------------------~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v 494 (762)
T TIGR03714 447 ------------------------------EGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGV 494 (762)
T ss_pred ------------------------------CCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccc
Confidence 234578899999999998888877777 7999999999999999
Q ss_pred ----CcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCc
Q 000129 1677 ----AHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1677 ----~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~ 1729 (2114)
++.||+ +++.|....+ .||+|||||. |.+|.++.+++..+
T Consensus 495 ~~~GGL~vIi----------t~~~ps~rid-~qr~GRtGRq--G~~G~s~~~is~eD 538 (762)
T TIGR03714 495 AELGGLAVIG----------TERMENSRVD-LQLRGRSGRQ--GDPGSSQFFVSLED 538 (762)
T ss_pred cccCCeEEEE----------ecCCCCcHHH-HHhhhcccCC--CCceeEEEEEccch
Confidence 889998 7777766666 9999999998 78999999987654
No 197
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=8.1e-23 Score=238.86 Aligned_cols=430 Identities=16% Similarity=0.159 Sum_probs=278.5
Q ss_pred HHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHH
Q 000129 1332 YEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDW 1410 (2114)
Q Consensus 1332 ~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~ 1410 (2114)
|-.+++ ...-|---|+.-|-.++..++.++++|.||||||.......+...... .+ .+.+..|+|.-|.+++.+.
T Consensus 36 Y~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~--~~--~v~CTQprrvaamsva~RV 111 (699)
T KOG0925|consen 36 YYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH--LT--GVACTQPRRVAAMSVAQRV 111 (699)
T ss_pred HHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh--cc--ceeecCchHHHHHHHHHHH
Confidence 344443 233455567788888998899899999999999987766666554442 23 6889999999999999988
Q ss_pred HHHhcCCCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHH
Q 000129 1411 EIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSR 1490 (2114)
Q Consensus 1411 ~~~f~~~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~sr 1490 (2114)
...+.-.+|-.|+...- .....-.++-+-+||.+. ++|.......+..+++||+||||. |.-.-..+..-
T Consensus 112 adEMDv~lG~EVGysIr---fEdC~~~~T~Lky~tDgm---LlrEams~p~l~~y~viiLDeahE----RtlATDiLmGl 181 (699)
T KOG0925|consen 112 ADEMDVTLGEEVGYSIR---FEDCTSPNTLLKYCTDGM---LLREAMSDPLLGRYGVIILDEAHE----RTLATDILMGL 181 (699)
T ss_pred HHHhccccchhcccccc---ccccCChhHHHHHhcchH---HHHHHhhCcccccccEEEechhhh----hhHHHHHHHHH
Confidence 87665434444433211 111111112234567665 455555677899999999999993 33334456666
Q ss_pred HHHHHhhcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHH
Q 000129 1491 MRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQH 1570 (2114)
Q Consensus 1491 l~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 1570 (2114)
++.+..+ .+++++|.+|||+ ++..+..|+|..+ +...+. . .|+++.+..-...++.. +..+.++ .|...
T Consensus 182 lk~v~~~-rpdLk~vvmSatl-~a~Kfq~yf~n~P--ll~vpg-~--~PvEi~Yt~e~erDylE---aairtV~-qih~~ 250 (699)
T KOG0925|consen 182 LKEVVRN-RPDLKLVVMSATL-DAEKFQRYFGNAP--LLAVPG-T--HPVEIFYTPEPERDYLE---AAIRTVL-QIHMC 250 (699)
T ss_pred HHHHHhh-CCCceEEEeeccc-chHHHHHHhCCCC--eeecCC-C--CceEEEecCCCChhHHH---HHHHHHH-HHHhc
Confidence 6766655 3699999999998 7889999998875 454443 3 34555444333333222 1112222 22222
Q ss_pred hcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHH
Q 000129 1571 AKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEV 1650 (2114)
Q Consensus 1571 l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~ 1650 (2114)
...+.+|||.++..+.+.+++.+..... ..........|..+| +.++..
T Consensus 251 -ee~GDilvFLtgeeeIe~aC~~i~re~~--------------------------~L~~~~g~l~v~PLy----P~~qq~ 299 (699)
T KOG0925|consen 251 -EEPGDILVFLTGEEEIEDACRKISREVD--------------------------NLGPQVGPLKVVPLY----PAQQQR 299 (699)
T ss_pred -cCCCCEEEEecCHHHHHHHHHHHHHHHH--------------------------hhccccCCceEEecC----chhhcc
Confidence 4578899999999998888877642211 111122233466777 444444
Q ss_pred HHHHHhc---C--CceEEEecCccccccCCCCcEEEE----EeeeEecCCcCc----CCCCCHhHHHHhHcccCCCCCCC
Q 000129 1651 VSALFEA---G--KIKVCVMSSSMCWGVPLTAHLVVV----MGTQYYDGQENA----HTDYPVTDLLQMMGHASRPLLDN 1717 (2114)
Q Consensus 1651 v~~~F~~---g--~i~VLVaT~~la~Gvdip~~~vVI----~gt~~yd~~~~~----~~~~s~~~~lQr~GRAGR~~~~~ 1717 (2114)
+++.... | ..+|+|+|++++.++.++++.+|| ...+.|+++... -.|+|.++..||.||||| ..
T Consensus 300 iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragr---t~ 376 (699)
T KOG0925|consen 300 IFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGR---TR 376 (699)
T ss_pred ccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccC---CC
Confidence 5444322 2 468999999999999999999999 234678877432 458999999999999999 58
Q ss_pred ceEEEEEeecCcHH------HHHHHHHhccCCCC-----ccccCCCccch-HHHHHHHHHHHHHHHHHCCCceecCCCcc
Q 000129 1718 SGKCVILCHAPRKE------YYKKFLRLTQNPNY-----YNLQGVSHRHL-SDHLSELVENTISDLEASKCIIIEEDMDL 1785 (2114)
Q Consensus 1718 ~G~~iil~~~~~~~------~~~~~lRl~~nP~~-----y~l~~~s~~~l-~~~lselve~~l~~L~~~~~I~~~~~~~~ 1785 (2114)
+|+|+.++++.-.. .|..++|......- .++.+.-+.+. ....-|.+.+++++|.-.+|+.- +-
T Consensus 377 pGkcfrLYte~~~~~em~~~typeilrsNL~s~VL~LKklgI~dlvhfdfmDpPAPEtLMrALE~LnYLaaLdD----dG 452 (699)
T KOG0925|consen 377 PGKCFRLYTEEAFEKEMQPQTYPEILRSNLSSTVLQLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLAALDD----DG 452 (699)
T ss_pred CCceEEeecHHhhhhcCCCCCcHHHHHHhhHHHHHHHHhcCcccccCCcCCCCCChHHHHHHHHHhhhhhhhCC----Cc
Confidence 99999999764211 12222211100000 12222222221 11134777888999988888842 34
Q ss_pred ccCcccchhhhcccCHhHHHHHHhhcCCCCChhhHHHHHh
Q 000129 1786 SPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLA 1825 (2114)
Q Consensus 1786 ~~t~lG~i~s~y~i~~~T~~~f~~sl~~~~~~~~iL~ils 1825 (2114)
..|.+|.+||.|+++|..+++++.+...+++ .++|.|-|
T Consensus 453 nLT~lG~imSEFPLdPqLAkmLi~S~efnCs-nEiLsisA 491 (699)
T KOG0925|consen 453 NLTSLGEIMSEFPLDPQLAKMLIGSCEFNCS-NEILSISA 491 (699)
T ss_pred ccchhhhhhhcCCCChHHHHHHhhcCCCCch-HHHHHHHh
Confidence 5788999999999999999999998877766 45555544
No 198
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.90 E-value=3.2e-22 Score=276.57 Aligned_cols=288 Identities=17% Similarity=0.125 Sum_probs=182.1
Q ss_pred hHHHHHhc--CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHH
Q 000129 1330 PLYEALYQ--GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (2114)
Q Consensus 1330 ~~~~~l~~--gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~ 1407 (2114)
..|.++|. ....|+|+|.++++.++.+. +++++||||||||+ |.+++...+.. .+. +++||+||++||.|++
T Consensus 65 ~~f~~~f~~~~g~~p~~iQ~~~i~~il~G~-d~vi~ApTGsGKT~-f~l~~~~~l~~--~g~--~vLIL~PTreLa~Qi~ 138 (1171)
T TIGR01054 65 KEFEEFFKKAVGSEPWSIQKMWAKRVLRGD-SFAIIAPTGVGKTT-FGLAMSLFLAK--KGK--RCYIILPTTLLVIQVA 138 (1171)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhCCC-eEEEECCCCCCHHH-HHHHHHHHHHh--cCC--eEEEEeCHHHHHHHHH
Confidence 34566664 24579999999999999865 59999999999997 55666655544 233 9999999999999999
Q ss_pred HHHHHHhcCCCCcEE---EEEcCCcccchh-----hcc--CCcEEEEChhhHHHHHhhhcccccccceeEEEeccccccc
Q 000129 1408 RDWEIKFGQGLGMRV---VELTGETAMDLK-----LLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (2114)
Q Consensus 1408 ~~~~~~f~~~~g~~v---~~l~G~~~~~~~-----~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~ 1477 (2114)
+.+++ +....|+.+ +.++|+.+...+ .+. ..+|+|+||+++.....++. .+++++|+||||.+.
T Consensus 139 ~~l~~-l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~-----~~~~~iVvDEaD~~L 212 (1171)
T TIGR01054 139 EKISS-LAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG-----PKFDFIFVDDVDALL 212 (1171)
T ss_pred HHHHH-HHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc-----CCCCEEEEeChHhhh
Confidence 99985 554445443 457787765421 222 36999999999876655421 179999999999887
Q ss_pred CCC----------Cc---hHHHHHHH---------------HHHHHhhcCCCce--EEEEcccCCChhHHH-HHhcCCCC
Q 000129 1478 GQG----------GP---VLEVIVSR---------------MRYIASQVENKIR--IVALSTSLANAKDLG-EWIGATSH 1526 (2114)
Q Consensus 1478 ~~~----------g~---~le~i~sr---------------l~~i~~~~~~~~r--iV~lSATl~n~~dla-~wl~~~~~ 1526 (2114)
+.. |. .++.++.. +..+....+...| ++++|||..+.. +. .++.. ..
T Consensus 213 ~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~-~~~~l~r~-ll 290 (1171)
T TIGR01054 213 KASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRG-KRAKLFRE-LL 290 (1171)
T ss_pred hccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccc-cHHHHccc-cc
Confidence 631 11 12222211 1111222233333 677899943221 11 12111 10
Q ss_pred ceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCCh---HHHHHHHHHHHHhhccCCc
Q 000129 1527 GLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSR---KYVRLTAVDLMTYSSMDGD 1603 (2114)
Q Consensus 1527 ~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr---~~a~~la~~L~~~~~~~~~ 1603 (2114)
. +....... .+....+.+..... . ......+...+ +.++||||+|+ +.|..++..|..
T Consensus 291 ~-~~v~~~~~--~~r~I~~~~~~~~~--~-----~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~L~~------- 351 (1171)
T TIGR01054 291 G-FEVGGGSD--TLRNVVDVYVEDED--L-----KETLLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEFLEN------- 351 (1171)
T ss_pred c-eEecCccc--cccceEEEEEeccc--H-----HHHHHHHHHHc--CCCEEEEEeccccHHHHHHHHHHHHh-------
Confidence 0 11111111 11111111110010 0 11122233332 46799999999 888888866622
Q ss_pred ccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEe----cCccccccCCCC-c
Q 000129 1604 QKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVM----SSSMCWGVPLTA-H 1678 (2114)
Q Consensus 1604 ~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVa----T~~la~Gvdip~-~ 1678 (2114)
.+..+..+||+|+. .+++.|++|+++|||| |++++||||+|+ +
T Consensus 352 ----------------------------~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V 399 (1171)
T TIGR01054 352 ----------------------------HGVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERV 399 (1171)
T ss_pred ----------------------------CCceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccc
Confidence 23468899999973 6889999999999999 589999999999 7
Q ss_pred EEEE
Q 000129 1679 LVVV 1682 (2114)
Q Consensus 1679 ~vVI 1682 (2114)
++||
T Consensus 400 ~~vI 403 (1171)
T TIGR01054 400 RYAV 403 (1171)
T ss_pred cEEE
Confidence 8888
No 199
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.90 E-value=2.9e-22 Score=257.68 Aligned_cols=322 Identities=16% Similarity=0.096 Sum_probs=210.3
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.|+++|..+...+..+ .+..++||+|||++|.+|++-.... +. .+.+++||+.||.|.++.+. .+.+.+|+
T Consensus 56 ~p~~vQlig~~~l~~G---~Iaem~TGeGKTLva~lpa~l~aL~---G~--~V~VvTpt~~LA~qdae~~~-~l~~~LGL 126 (745)
T TIGR00963 56 RPFDVQLIGGIALHKG---KIAEMKTGEGKTLTATLPAYLNALT---GK--GVHVVTVNDYLAQRDAEWMG-QVYRFLGL 126 (745)
T ss_pred CccchHHhhhhhhcCC---ceeeecCCCccHHHHHHHHHHHHHh---CC--CEEEEcCCHHHHHHHHHHHH-HHhccCCC
Confidence 6778888777766543 3899999999999999999533333 33 68999999999999999888 55566799
Q ss_pred EEEEEcCCcccch-hhccCCcEEEEChhhH-HHHHhhhc----ccccccceeEEEecccccccC--CC------Cc--hH
Q 000129 1421 RVVELTGETAMDL-KLLEKGQIIISTPEKW-DALSRRWK----QRKYVQQVSLFIIDELHLIGG--QG------GP--VL 1484 (2114)
Q Consensus 1421 ~v~~l~G~~~~~~-~~l~~~~IIV~TPe~l-~~l~r~~~----~~~~l~~v~liIiDEaH~l~~--~~------g~--~l 1484 (2114)
+|+.++|+.+... +..-.++|+|+||.++ ..++|... ....++.+.++||||+|.++- .+ |+ .-
T Consensus 127 sv~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~~~ 206 (745)
T TIGR00963 127 SVGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKS 206 (745)
T ss_pred eEEEEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCCCc
Confidence 9999999877653 2334579999999998 66666521 123578899999999996642 11 21 00
Q ss_pred HHHHHHHHHHHhhcCC--------Cce-----------------------------------------------------
Q 000129 1485 EVIVSRMRYIASQVEN--------KIR----------------------------------------------------- 1503 (2114)
Q Consensus 1485 e~i~srl~~i~~~~~~--------~~r----------------------------------------------------- 1503 (2114)
..+......+...+.. ..+
T Consensus 207 ~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d 286 (745)
T TIGR00963 207 TELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIVRD 286 (745)
T ss_pred hHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEEC
Confidence 1111111111111110 111
Q ss_pred --------------------------------------------------------EEEEcccCCCh-hHHHHHhcCCCC
Q 000129 1504 --------------------------------------------------------IVALSTSLANA-KDLGEWIGATSH 1526 (2114)
Q Consensus 1504 --------------------------------------------------------iV~lSATl~n~-~dla~wl~~~~~ 1526 (2114)
+.|||.|.... .+|.+..+..
T Consensus 287 ~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~-- 364 (745)
T TIGR00963 287 GEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNLE-- 364 (745)
T ss_pred CEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCCC--
Confidence 22222222110 1111111111
Q ss_pred ceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccc
Q 000129 1527 GLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKS 1606 (2114)
Q Consensus 1527 ~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~ 1606 (2114)
++. -|..+|+...- .+..-+.... ...+.....+......+.|+||||+|...++.++..|..
T Consensus 365 -vv~-IPtnkp~~R~d----~~d~i~~t~~-~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~---------- 427 (745)
T TIGR00963 365 -VVV-VPTNRPVIRKD----LSDLVYKTEE-EKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKE---------- 427 (745)
T ss_pred -EEE-eCCCCCeeeee----CCCeEEcCHH-HHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHH----------
Confidence 111 12222211100 0000000000 011122333333336789999999999999999877633
Q ss_pred cccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCC-------cE
Q 000129 1607 AFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTA-------HL 1679 (2114)
Q Consensus 1607 ~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~-------~~ 1679 (2114)
.+.....+||. +.+|...+..|+.+...|+|||++++||+|++. ..
T Consensus 428 -------------------------~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl 480 (745)
T TIGR00963 428 -------------------------RGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGL 480 (745)
T ss_pred -------------------------cCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCc
Confidence 12346788998 789999999999999999999999999999998 56
Q ss_pred EEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCc
Q 000129 1680 VVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1680 vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~ 1729 (2114)
+|| +++.|.|...+.|++|||||. |.+|.+..+++..+
T Consensus 481 ~VI----------~t~~p~s~ri~~q~~GRtGRq--G~~G~s~~~ls~eD 518 (745)
T TIGR00963 481 YVI----------GTERHESRRIDNQLRGRSGRQ--GDPGSSRFFLSLED 518 (745)
T ss_pred EEE----------ecCCCCcHHHHHHHhccccCC--CCCcceEEEEeccH
Confidence 899 888999999999999999998 68899999988765
No 200
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.90 E-value=1.1e-21 Score=222.00 Aligned_cols=317 Identities=19% Similarity=0.265 Sum_probs=221.3
Q ss_pred CCCCHHHHHHHHHHH---cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000129 1340 KHFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il---~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~ 1416 (2114)
.+++|.|..+-+.++ +..+..||.|-||+|||....-+|-..+.+ ++ ++.+..|+...|-+++.+++..|.
T Consensus 96 G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~---G~--~vciASPRvDVclEl~~Rlk~aF~- 169 (441)
T COG4098 96 GTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQ---GG--RVCIASPRVDVCLELYPRLKQAFS- 169 (441)
T ss_pred cccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhc---CC--eEEEecCcccchHHHHHHHHHhhc-
Confidence 389999998877764 456679999999999998876666665555 55 899999999999999999998886
Q ss_pred CCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHh
Q 000129 1417 GLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIAS 1496 (2114)
Q Consensus 1417 ~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~ 1496 (2114)
+..+..++|+.+.-. +++++|+|..++..+ -+.++++||||+|...-...+.+...+..-+.
T Consensus 170 --~~~I~~Lyg~S~~~f----r~plvVaTtHQLlrF---------k~aFD~liIDEVDAFP~~~d~~L~~Av~~ark--- 231 (441)
T COG4098 170 --NCDIDLLYGDSDSYF----RAPLVVATTHQLLRF---------KQAFDLLIIDEVDAFPFSDDQSLQYAVKKARK--- 231 (441)
T ss_pred --cCCeeeEecCCchhc----cccEEEEehHHHHHH---------HhhccEEEEeccccccccCCHHHHHHHHHhhc---
Confidence 468899999877553 379999998875432 23579999999997754445556555554432
Q ss_pred hcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCC--CCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCC
Q 000129 1497 QVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPG--VRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNE 1574 (2114)
Q Consensus 1497 ~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~--~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 1574 (2114)
..--.|.+|||+++. +..-+..........+.. .+|.|+-..+...+......+ ..+.-..+..+..+...+
T Consensus 232 ---~~g~~IylTATp~k~--l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r-~kl~~kl~~~lekq~~~~ 305 (441)
T COG4098 232 ---KEGATIYLTATPTKK--LERKILKGNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQR-NKLPLKLKRWLEKQRKTG 305 (441)
T ss_pred ---ccCceEEEecCChHH--HHHHhhhCCeeEeecchhhcCCCCCCCceEEeccHHHHhhh-ccCCHHHHHHHHHHHhcC
Confidence 355679999998753 222222221112222221 233333333222211111111 112334555566666778
Q ss_pred CCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHH
Q 000129 1575 KPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSAL 1654 (2114)
Q Consensus 1575 ~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~ 1654 (2114)
.|++||+|+....+.+|..|.... ....++..|+. ...|.+..+.
T Consensus 306 ~P~liF~p~I~~~eq~a~~lk~~~---------------------------------~~~~i~~Vhs~--d~~R~EkV~~ 350 (441)
T COG4098 306 RPVLIFFPEIETMEQVAAALKKKL---------------------------------PKETIASVHSE--DQHRKEKVEA 350 (441)
T ss_pred CcEEEEecchHHHHHHHHHHHhhC---------------------------------Cccceeeeecc--CccHHHHHHH
Confidence 999999999999988886663221 12246778876 4678999999
Q ss_pred HhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCc
Q 000129 1655 FEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1655 F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~ 1729 (2114)
|++|++++||+|.+++||+++|.+.|+|.|.. | .-++.+.++|++||+||.-....|.++.|-....
T Consensus 351 fR~G~~~lLiTTTILERGVTfp~vdV~Vlgae------h--~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~s 417 (441)
T COG4098 351 FRDGKITLLITTTILERGVTFPNVDVFVLGAE------H--RVFTESALVQIAGRVGRSLERPTGDVLFFHYGKS 417 (441)
T ss_pred HHcCceEEEEEeehhhcccccccceEEEecCC------c--ccccHHHHHHHhhhccCCCcCCCCcEEEEeccch
Confidence 99999999999999999999999999986543 2 2367889999999999986556677776655443
No 201
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.88 E-value=6.3e-23 Score=235.61 Aligned_cols=288 Identities=17% Similarity=0.246 Sum_probs=189.2
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHhcCC---CCcEEEEEcCCcccc--hhhc-cCCcEEEEChhhHHHHHhhhcccccccc
Q 000129 1391 MRAVYIAPLEALAKERYRDWEIKFGQG---LGMRVVELTGETAMD--LKLL-EKGQIIISTPEKWDALSRRWKQRKYVQQ 1464 (2114)
Q Consensus 1391 ~k~l~I~Ptr~La~q~~~~~~~~f~~~---~g~~v~~l~G~~~~~--~~~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~ 1464 (2114)
+++|++-|.|+|+.|+++.+. .|... ..++...+.|+.... .+.+ ...+|+|+||++++.++.. ....+.+
T Consensus 287 p~avivepsrelaEqt~N~i~-~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~--g~~~lt~ 363 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIE-EFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISK--GLVTLTH 363 (725)
T ss_pred cceeEecCcHHHHHHHHhhHH-HHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhc--cceeeee
Confidence 689999999999999999766 45433 133433455544332 2233 4459999999999988765 4557889
Q ss_pred eeEEEecccccccCCCCchHHHHHHHHH----HHHhhcCCCceEEEEcccCCCh--hHHH-------HHhcCCCCc----
Q 000129 1465 VSLFIIDELHLIGGQGGPVLEVIVSRMR----YIASQVENKIRIVALSTSLANA--KDLG-------EWIGATSHG---- 1527 (2114)
Q Consensus 1465 v~liIiDEaH~l~~~~g~~le~i~srl~----~i~~~~~~~~riV~lSATl~n~--~dla-------~wl~~~~~~---- 1527 (2114)
++++|+||++.+.+.. |...+.|+. .+.+. +..+|.+.+|||+.-. ..++ .|.......
T Consensus 364 crFlvlDead~lL~qg---y~d~I~r~h~qip~~tsd-g~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpe 439 (725)
T KOG0349|consen 364 CRFLVLDEADLLLGQG---YDDKIYRFHGQIPHMTSD-GFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPE 439 (725)
T ss_pred eEEEEecchhhhhhcc---cHHHHHHHhccchhhhcC-CcccccceeeeEEeEEEeeehhhhhccCceeEecccccccch
Confidence 9999999999887543 333444443 33221 3578999999998542 1222 333222111
Q ss_pred -eeecCCCCCc--------c--CcEE---E----E-ecccccchHHHHHhcCHH--HHHHHHHHhcCCCCEEEEeCChHH
Q 000129 1528 -LFNFPPGVRP--------V--PLEI---H----I-QGVDITNFEARMQAMTKP--TFTAIVQHAKNEKPALVFVPSRKY 1586 (2114)
Q Consensus 1528 -~~~f~~~~rp--------v--~l~~---~----~-~~~~~~~~~~~~~~~~~~--~~~~i~~~l~~~~~~LVFv~sr~~ 1586 (2114)
+..+.....| . +++. + + .+...+...+....+.+. ...++.++ ...++||||.|+..
T Consensus 440 tvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h--~mdkaiifcrtk~d 517 (725)
T KOG0349|consen 440 TVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH--AMDKAIIFCRTKQD 517 (725)
T ss_pred hhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh--ccCceEEEEecccc
Confidence 1111000000 0 0000 0 0 000001111111111111 12223332 45689999999999
Q ss_pred HHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEec
Q 000129 1587 VRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMS 1666 (2114)
Q Consensus 1587 a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT 1666 (2114)
|..+-+.+.+... -.+.+..+|++..+.+|+.-++.|+.+.++.||||
T Consensus 518 cDnLer~~~qkgg--------------------------------~~~scvclhgDrkP~Erk~nle~Fkk~dvkflict 565 (725)
T KOG0349|consen 518 CDNLERMMNQKGG--------------------------------KHYSCVCLHGDRKPDERKANLESFKKFDVKFLICT 565 (725)
T ss_pred chHHHHHHHHcCC--------------------------------ccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEe
Confidence 9887766643221 13458889999999999999999999999999999
Q ss_pred CccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHH
Q 000129 1667 SSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE 1731 (2114)
Q Consensus 1667 ~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~ 1731 (2114)
++++||+|+.++-++| +...|-....|+||+||+||+ .+.|.++.++....+.
T Consensus 566 dvaargldi~g~p~~i----------nvtlpd~k~nyvhrigrvgra--ermglaislvat~~ek 618 (725)
T KOG0349|consen 566 DVAARGLDITGLPFMI----------NVTLPDDKTNYVHRIGRVGRA--ERMGLAISLVATVPEK 618 (725)
T ss_pred hhhhccccccCCceEE----------EEecCcccchhhhhhhccchh--hhcceeEEEeeccchh
Confidence 9999999999999999 777888999999999999998 7899999988765443
No 202
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.88 E-value=2.2e-21 Score=247.25 Aligned_cols=296 Identities=21% Similarity=0.282 Sum_probs=192.2
Q ss_pred CCCCCHHHHHHHHHHHcC---CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000129 493 MTQLNRVQSRVYKSALSS---ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (2114)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~---~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~ 569 (2114)
...|+++|.+++..+... ....++++|||+|||.+++..+-... .+++||+|+++|+.|+.+.
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~--------------~~~Lvlv~~~~L~~Qw~~~ 99 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK--------------RSTLVLVPTKELLDQWAEA 99 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc--------------CCEEEEECcHHHHHHHHHH
Confidence 347999999999998874 56699999999999999977665431 1499999999999999988
Q ss_pred HHHhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhc-cCCCcccccccEEEEecccccccCCchhHHHHHH
Q 000129 570 LSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRK-SGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVA 648 (2114)
Q Consensus 570 ~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~-~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~ 648 (2114)
+.+.+.. +..++.+.|+...... ..|.|+|... +.+. .......+..++||+||||++.... +..+..
T Consensus 100 ~~~~~~~-~~~~g~~~~~~~~~~~----~~i~vat~qt---l~~~~~l~~~~~~~~~liI~DE~Hh~~a~~---~~~~~~ 168 (442)
T COG1061 100 LKKFLLL-NDEIGIYGGGEKELEP----AKVTVATVQT---LARRQLLDEFLGNEFGLIIFDEVHHLPAPS---YRRILE 168 (442)
T ss_pred HHHhcCC-ccccceecCceeccCC----CcEEEEEhHH---HhhhhhhhhhcccccCEEEEEccccCCcHH---HHHHHH
Confidence 8776542 2346666665432221 5799999874 4443 1111233368999999999987432 232322
Q ss_pred HHHHHHhhcccccc-EEEEccccCChHH------HHHHHhccccCceEeec-------CCcccccceeEEEeeccCc---
Q 000129 649 RTVRQIETTKEHIR-LVGLSATLPNYED------VALFLRVNLEKGLFYFD-------NSYRPVPLSQQYIGIQVKK--- 711 (2114)
Q Consensus 649 rl~~~~~~~~~~~r-iv~lSATlpn~~d------va~~l~~~~~~~~~~f~-------~~~rpv~l~~~~~~~~~~~--- 711 (2114)
.+ .... ++|||||.+ ..| +...++ ...+.+. ....|..+...........
T Consensus 169 ~~--------~~~~~~LGLTATp~-R~D~~~~~~l~~~~g----~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~ 235 (442)
T COG1061 169 LL--------SAAYPRLGLTATPE-REDGGRIGDLFDLIG----PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEERE 235 (442)
T ss_pred hh--------hcccceeeeccCce-eecCCchhHHHHhcC----CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHH
Confidence 22 1223 899999965 222 222221 0011111 0111111111111000000
Q ss_pred ---hhHHH-------------------HHhhH----HHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhccccccc
Q 000129 712 ---PLQRF-------------------QLMND----LCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGR 765 (2114)
Q Consensus 712 ---~~~~~-------------------~~~~~----~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~ 765 (2114)
...+. ...+. .+...+..+..+.+++||+.+...+..++..+...+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~-------- 307 (442)
T COG1061 236 YAKESARFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPG-------- 307 (442)
T ss_pred hhhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCC--------
Confidence 00000 00011 111112222245699999999999999988775422
Q ss_pred ccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEec
Q 000129 766 FLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKG 845 (2114)
Q Consensus 766 ~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~ 845 (2114)
++....+..+..+|..+++.|+.|.+++||++.++..|+|+|++.++|.
T Consensus 308 ------------------------------~~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~- 356 (442)
T COG1061 308 ------------------------------IVEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLII- 356 (442)
T ss_pred ------------------------------ceEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEE-
Confidence 1345689999999999999999999999999999999999999999996
Q ss_pred ceeccCCCCccccCCHHHHHHhhcccCCC
Q 000129 846 TQIYNPEKGAWTELSPLDIMQMLGRAGRP 874 (2114)
Q Consensus 846 ~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~ 874 (2114)
-.|.+ |...|+||+||.-|+
T Consensus 357 ---~~~t~------S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 357 ---LRPTG------SRRLFIQRLGRGLRP 376 (442)
T ss_pred ---eCCCC------cHHHHHHHhhhhccC
Confidence 55533 899999999999996
No 203
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.88 E-value=8e-21 Score=215.23 Aligned_cols=311 Identities=22% Similarity=0.283 Sum_probs=207.4
Q ss_pred CCCHHHHHHHHHHH---cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 495 QLNRVQSRVYKSAL---SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l---~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
+|++.|+.+-..++ ...+.+||.|-||||||....-.|-..+.++ .++.+.+|....|-|.+.+++
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G-----------~~vciASPRvDVclEl~~Rlk 165 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQG-----------GRVCIASPRVDVCLELYPRLK 165 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcC-----------CeEEEecCcccchHHHHHHHH
Confidence 89999998877654 4567799999999999998766666666543 379999999999999999999
Q ss_pred HhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHH
Q 000129 572 NRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTV 651 (2114)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~ 651 (2114)
..|. ++.+..++|+..... .++++|+|... +.|. -+.++++||||+|-..-.-.+.+...+...
T Consensus 166 ~aF~--~~~I~~Lyg~S~~~f----r~plvVaTtHQ---LlrF------k~aFD~liIDEVDAFP~~~d~~L~~Av~~a- 229 (441)
T COG4098 166 QAFS--NCDIDLLYGDSDSYF----RAPLVVATTHQ---LLRF------KQAFDLLIIDEVDAFPFSDDQSLQYAVKKA- 229 (441)
T ss_pred Hhhc--cCCeeeEecCCchhc----cccEEEEehHH---HHHH------HhhccEEEEeccccccccCCHHHHHHHHHh-
Confidence 9876 567888999865433 37899998774 3332 234799999999976543445555444433
Q ss_pred HHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCc--ccccceeEEEeeccCchhHHHHHhhHHHHHHHHH
Q 000129 652 RQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSY--RPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA 729 (2114)
Q Consensus 652 ~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~--rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 729 (2114)
....--+|.||||-++ .+.+-+... ..........| +|.|+...+....-.+...+ +.+...++..+.+
T Consensus 230 -----rk~~g~~IylTATp~k--~l~r~~~~g-~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r-~kl~~kl~~~lek 300 (441)
T COG4098 230 -----RKKEGATIYLTATPTK--KLERKILKG-NLRILKLPARFHGKPLPVPKFVWIGNWNKKLQR-NKLPLKLKRWLEK 300 (441)
T ss_pred -----hcccCceEEEecCChH--HHHHHhhhC-CeeEeecchhhcCCCCCCCceEEeccHHHHhhh-ccCCHHHHHHHHH
Confidence 2345567999999553 222222110 00111122222 23333322211111111111 1122233444444
Q ss_pred HhC-CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHH
Q 000129 730 VAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGD 808 (2114)
Q Consensus 730 ~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~ 808 (2114)
+.. +.|++||+++....+++|..|+..... ..++..|+. ..+
T Consensus 301 q~~~~~P~liF~p~I~~~eq~a~~lk~~~~~-----------------------------------~~i~~Vhs~--d~~ 343 (441)
T COG4098 301 QRKTGRPVLIFFPEIETMEQVAAALKKKLPK-----------------------------------ETIASVHSE--DQH 343 (441)
T ss_pred HHhcCCcEEEEecchHHHHHHHHHHHhhCCc-----------------------------------cceeeeecc--Ccc
Confidence 443 679999999999999999988654211 124555664 467
Q ss_pred HHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEc
Q 000129 809 RQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT 886 (2114)
Q Consensus 809 R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~ 886 (2114)
|.+..+.|++|++++|++|.+|+|||.+|.++|.|- +.+. .-++.+.++|++||+||.---..|..+.+-
T Consensus 344 R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vl-----gaeh---~vfTesaLVQIaGRvGRs~~~PtGdv~FFH 413 (441)
T COG4098 344 RKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVL-----GAEH---RVFTESALVQIAGRVGRSLERPTGDVLFFH 413 (441)
T ss_pred HHHHHHHHHcCceEEEEEeehhhcccccccceEEEe-----cCCc---ccccHHHHHHHhhhccCCCcCCCCcEEEEe
Confidence 888999999999999999999999999999999884 3332 235788999999999996433446655553
No 204
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.88 E-value=4.7e-21 Score=244.24 Aligned_cols=299 Identities=16% Similarity=0.181 Sum_probs=195.0
Q ss_pred CCCCCHHHHHHHHHHHcC---CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000129 1339 FKHFNPIQTQVFTVLYNT---DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~---~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~ 1415 (2114)
...++++|.+++.++.+. .+..++++|||+|||+++..++- .+.. +++||||+++|+.|+++.+...+.
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~-~~~~-------~~Lvlv~~~~L~~Qw~~~~~~~~~ 105 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIA-ELKR-------STLVLVPTKELLDQWAEALKKFLL 105 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHH-HhcC-------CEEEEECcHHHHHHHHHHHHHhcC
Confidence 346999999999999874 66699999999999999966554 2222 599999999999999988775544
Q ss_pred CCCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHH
Q 000129 1416 QGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIA 1495 (2114)
Q Consensus 1416 ~~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~ 1495 (2114)
. ...++.+.|+..... ...|.|+|...+...- ..........++||+||||++.... +..+...+
T Consensus 106 ~--~~~~g~~~~~~~~~~----~~~i~vat~qtl~~~~--~l~~~~~~~~~liI~DE~Hh~~a~~---~~~~~~~~---- 170 (442)
T COG1061 106 L--NDEIGIYGGGEKELE----PAKVTVATVQTLARRQ--LLDEFLGNEFGLIIFDEVHHLPAPS---YRRILELL---- 170 (442)
T ss_pred C--ccccceecCceeccC----CCcEEEEEhHHHhhhh--hhhhhcccccCEEEEEccccCCcHH---HHHHHHhh----
Confidence 2 234666666544321 1579999987754321 0011123369999999999997543 22222221
Q ss_pred hhcCCCce-EEEEcccCCChh-----HHHHHhcCCCCceeecC-------CCCCccCcEEEEecccccc------hH---
Q 000129 1496 SQVENKIR-IVALSTSLANAK-----DLGEWIGATSHGLFNFP-------PGVRPVPLEIHIQGVDITN------FE--- 1553 (2114)
Q Consensus 1496 ~~~~~~~r-iV~lSATl~n~~-----dla~wl~~~~~~~~~f~-------~~~rpv~l~~~~~~~~~~~------~~--- 1553 (2114)
. ... ++|||||++..+ ++...+| ..++.+. ....|.............. ..
T Consensus 171 ---~-~~~~~LGLTATp~R~D~~~~~~l~~~~g---~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~ 243 (442)
T COG1061 171 ---S-AAYPRLGLTATPEREDGGRIGDLFDLIG---PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARF 243 (442)
T ss_pred ---h-cccceeeeccCceeecCCchhHHHHhcC---CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhh
Confidence 1 233 899999986433 3444444 1222222 1111211111111011000 00
Q ss_pred ----------------HHHHhcCHHHHHHHHHHhc---CCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcc
Q 000129 1554 ----------------ARMQAMTKPTFTAIVQHAK---NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAE 1614 (2114)
Q Consensus 1554 ----------------~~~~~~~~~~~~~i~~~l~---~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~ 1614 (2114)
.............+...+. .+.+++||+.+..++..++..+..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~------------------ 305 (442)
T COG1061 244 RELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLA------------------ 305 (442)
T ss_pred hhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcC------------------
Confidence 0011111111222222222 467999999999999988866521
Q ss_pred cchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCc
Q 000129 1615 EVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENA 1694 (2114)
Q Consensus 1615 ~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~ 1694 (2114)
..++..+.+..+..+|..+++.|+.|.+++||++.++..|+|+|++.++|+ .
T Consensus 306 ------------------~~~~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~----------~ 357 (442)
T COG1061 306 ------------------PGIVEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLII----------L 357 (442)
T ss_pred ------------------CCceEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEE----------e
Confidence 111678899999999999999999999999999999999999999999883 2
Q ss_pred CCCCCHhHHHHhHcccCCC
Q 000129 1695 HTDYPVTDLLQMMGHASRP 1713 (2114)
Q Consensus 1695 ~~~~s~~~~lQr~GRAGR~ 1713 (2114)
...-|...|+||+||.-|+
T Consensus 358 ~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 358 RPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred CCCCcHHHHHHHhhhhccC
Confidence 2356889999999999996
No 205
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.88 E-value=5.4e-21 Score=250.66 Aligned_cols=307 Identities=20% Similarity=0.279 Sum_probs=223.3
Q ss_pred CCCHHHHHHHHHHHcC---CC--cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000129 495 QLNRVQSRVYKSALSS---AD--NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~---~~--nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~ 569 (2114)
.-|+=|..||..+... .. +-||||.-|-|||.+|+-+++.....+ .+|.+++||.-||+|.+++
T Consensus 594 eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~G-----------KQVAvLVPTTlLA~QHy~t 662 (1139)
T COG1197 594 EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDG-----------KQVAVLVPTTLLAQQHYET 662 (1139)
T ss_pred cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCC-----------CeEEEEcccHHhHHHHHHH
Confidence 6799999999988653 22 469999999999999999999988754 4899999999999999999
Q ss_pred HHHhhccCCcEEEEEeCCCccChhh-------hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchh
Q 000129 570 LSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPV 642 (2114)
Q Consensus 570 ~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~ 642 (2114)
|+++|..++++|..++-=.+...+. .+..+|||+|.- ++.+ ...+++++|+||||-|+.+ -.
T Consensus 663 FkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr----LL~k---dv~FkdLGLlIIDEEqRFG----Vk 731 (1139)
T COG1197 663 FKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR----LLSK---DVKFKDLGLLIIDEEQRFG----VK 731 (1139)
T ss_pred HHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH----hhCC---CcEEecCCeEEEechhhcC----cc
Confidence 9999999999999987644433221 357899999975 2222 2567889999999999864 22
Q ss_pred HHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHH-hccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhH
Q 000129 643 LESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFL-RVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMND 721 (2114)
Q Consensus 643 le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l-~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~ 721 (2114)
-. ..+.....++-++-|||| |=+..+.--+ +.. .-.+.. .+.....|++- |+. ..+. .
T Consensus 732 ~K-------EkLK~Lr~~VDvLTLSAT-PIPRTL~Msm~GiR-dlSvI~-TPP~~R~pV~T-~V~--~~d~--------~ 790 (1139)
T COG1197 732 HK-------EKLKELRANVDVLTLSAT-PIPRTLNMSLSGIR-DLSVIA-TPPEDRLPVKT-FVS--EYDD--------L 790 (1139)
T ss_pred HH-------HHHHHHhccCcEEEeeCC-CCcchHHHHHhcch-hhhhcc-CCCCCCcceEE-EEe--cCCh--------H
Confidence 22 122334578999999999 4333333222 211 100111 11111122222 221 1111 1
Q ss_pred HHHHHH-HHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEe
Q 000129 722 LCYEKV-VAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIH 800 (2114)
Q Consensus 722 ~~~~~i-~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~h 800 (2114)
.+.+.+ .+..+++|+-.-+|..+..++.+..|++...+ ..|++-
T Consensus 791 ~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPE-----------------------------------arI~va 835 (1139)
T COG1197 791 LIREAILRELLRGGQVFYVHNRVESIEKKAERLRELVPE-----------------------------------ARIAVA 835 (1139)
T ss_pred HHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCc-----------------------------------eEEEEe
Confidence 122222 34566899998899999999999998875432 247888
Q ss_pred cCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCce
Q 000129 801 HAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYG 880 (2114)
Q Consensus 801 Hagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G 880 (2114)
||.|+..+-+.++..|-+|+.+|||||.+.+.|||+|+.+.+|- .+... +..+++.|.-||.||.. ..|
T Consensus 836 HGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiII----e~AD~-----fGLsQLyQLRGRVGRS~--~~A 904 (1139)
T COG1197 836 HGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIII----ERADK-----FGLAQLYQLRGRVGRSN--KQA 904 (1139)
T ss_pred ecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEE----ecccc-----ccHHHHHHhccccCCcc--ceE
Confidence 99999999999999999999999999999999999999987663 34333 58999999999999964 789
Q ss_pred EEEEEcCCCc
Q 000129 881 EGIIITGHSE 890 (2114)
Q Consensus 881 ~~iil~~~~e 890 (2114)
.||+++.+.+
T Consensus 905 YAYfl~p~~k 914 (1139)
T COG1197 905 YAYFLYPPQK 914 (1139)
T ss_pred EEEEeecCcc
Confidence 9999998754
No 206
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.88 E-value=3.1e-21 Score=249.67 Aligned_cols=373 Identities=23% Similarity=0.233 Sum_probs=260.4
Q ss_pred CCCCCHHHHHHHHHHHcC---CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000129 493 MTQLNRVQSRVYKSALSS---ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (2114)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~---~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~ 569 (2114)
...+|+-|..++..+..+ ....|+.+.||||||.+|+-+|-..+.+++ .+|+++|-.+|..|+..+
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~Gk-----------qvLvLVPEI~Ltpq~~~r 264 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGK-----------QVLVLVPEIALTPQLLAR 264 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCC-----------EEEEEeccccchHHHHHH
Confidence 347899999999988766 467999999999999999999999988753 799999999999999999
Q ss_pred HHHhhccCCcEEEEEeCCCccChhh-------hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccc--cCCc
Q 000129 570 LSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH--DNRG 640 (2114)
Q Consensus 570 ~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~--d~rg 640 (2114)
|+.+|+ .+|.+++++.+...+. .++..|+|+| ++.-+..++++++|||||-|--. ...+
T Consensus 265 f~~rFg---~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGt---------RSAlF~Pf~~LGLIIvDEEHD~sYKq~~~ 332 (730)
T COG1198 265 FKARFG---AKVAVLHSGLSPGERYRVWRRARRGEARVVIGT---------RSALFLPFKNLGLIIVDEEHDSSYKQEDG 332 (730)
T ss_pred HHHHhC---CChhhhcccCChHHHHHHHHHHhcCCceEEEEe---------chhhcCchhhccEEEEeccccccccCCcC
Confidence 999874 7899999887655432 3678999999 44456778999999999999542 2344
Q ss_pred hhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccc-cceeEEEeeccCchhHHHHHh
Q 000129 641 PVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPV-PLSQQYIGIQVKKPLQRFQLM 719 (2114)
Q Consensus 641 ~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv-~l~~~~~~~~~~~~~~~~~~~ 719 (2114)
+.+. +|-+...+....++.+|+-||| |..+........ ....+.+...+... +....++.......... ..+
T Consensus 333 prYh---ARdvA~~Ra~~~~~pvvLgSAT-PSLES~~~~~~g--~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~-~~l 405 (730)
T COG1198 333 PRYH---ARDVAVLRAKKENAPVVLGSAT-PSLESYANAESG--KYKLLRLTNRAGRARLPRVEIIDMRKEPLETG-RSL 405 (730)
T ss_pred CCcC---HHHHHHHHHHHhCCCEEEecCC-CCHHHHHhhhcC--ceEEEEccccccccCCCcceEEeccccccccC-ccC
Confidence 4443 2333334455678999999999 665554444221 11233344433322 33344444332221111 014
Q ss_pred hHHHHHHHHHHhC-CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcc----------cCc--
Q 000129 720 NDLCYEKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDM----------VKS-- 786 (2114)
Q Consensus 720 ~~~~~~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~----------~~~-- 786 (2114)
...+++.+.+... +.|+|+|+|.|..+-.+.+.=+..-..|..+...+..+.......|..|.. |..
T Consensus 406 S~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~ 485 (730)
T COG1198 406 SPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEH 485 (730)
T ss_pred CHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCe
Confidence 5666677766655 779999999999887766655555556666655555554444444544432 221
Q ss_pred ------------chhhhhcc-CceEEecCCCCHHH--HHHHHHHHhCCCceEEEechHhhhhcCCCceEE--EEecceec
Q 000129 787 ------------NDLKDLLP-YGFAIHHAGMTRGD--RQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTV--IIKGTQIY 849 (2114)
Q Consensus 787 ------------~~L~~ll~-~gv~~hHagl~~~~--R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~v--VI~~~~~y 849 (2114)
+.|+.++| ..|...-++.+... -+..++.|.+|+++|||.|..++.|.|+|+++. |++.+...
T Consensus 486 L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L 565 (730)
T COG1198 486 LRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGL 565 (730)
T ss_pred eEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhh
Confidence 34555553 45555656555433 356788999999999999999999999999997 45544444
Q ss_pred cCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcHHHHHHh
Q 000129 850 NPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSL 897 (2114)
Q Consensus 850 d~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~~l 897 (2114)
..+..|..|-..+-+.|-+|||||.+ ..|.++|.|..++...+..+
T Consensus 566 ~~~DfRA~Er~fqll~QvaGRAgR~~--~~G~VvIQT~~P~hp~i~~~ 611 (730)
T COG1198 566 GSPDFRASERTFQLLMQVAGRAGRAG--KPGEVVIQTYNPDHPAIQAL 611 (730)
T ss_pred cCCCcchHHHHHHHHHHHHhhhccCC--CCCeEEEEeCCCCcHHHHHH
Confidence 44455667788899999999999965 78999999998885554433
No 207
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.88 E-value=4.1e-22 Score=228.94 Aligned_cols=288 Identities=17% Similarity=0.241 Sum_probs=184.5
Q ss_pred CCcEEEEEcccHHHHHHHHHHHHH---hhccCCcEEEEEeCCCccChh---hhccceEEEcCHhHHHHHHhccCCCcccc
Q 000129 549 SNYKIVYVAPMKALVAEVVGNLSN---RLQMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEKWDIITRKSGDRTYTQ 622 (2114)
Q Consensus 549 ~~~kil~iaP~raLa~q~~~~~~~---~~~~~gi~v~~l~Gd~~~~~~---~~~~~~IiV~TPek~d~l~r~~~~~~~l~ 622 (2114)
+.+++|++-|.++|+.|....+.+ ......++-..+.|+.....+ ....++|+|+||++++-...+. ...+.
T Consensus 285 Nap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g--~~~lt 362 (725)
T KOG0349|consen 285 NAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKG--LVTLT 362 (725)
T ss_pred CCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhcc--ceeee
Confidence 456899999999999999996554 333223444456665544332 3468999999999985444332 25678
Q ss_pred cccEEEEecccccccCCchhHHHHHHHHHHHHhhc---cccccEEEEccccCCh--HHHHH-------HHhccccC----
Q 000129 623 LVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETT---KEHIRLVGLSATLPNY--EDVAL-------FLRVNLEK---- 686 (2114)
Q Consensus 623 ~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~---~~~~riv~lSATlpn~--~dva~-------~l~~~~~~---- 686 (2114)
.++++++||++.++. ..+...+.|+..++... ....|.+.+|||+.-. ..+++ |.......
T Consensus 363 ~crFlvlDead~lL~---qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpe 439 (725)
T KOG0349|consen 363 HCRFLVLDEADLLLG---QGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPE 439 (725)
T ss_pred eeEEEEecchhhhhh---cccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccch
Confidence 899999999999874 33455566665544433 3467889999998632 12222 22111000
Q ss_pred ceEe--------ecCCcccc---------cceeEEEe--eccCchhHHHHHh-hHHHHHHHHHHhCCCeEEEEecChHHH
Q 000129 687 GLFY--------FDNSYRPV---------PLSQQYIG--IQVKKPLQRFQLM-NDLCYEKVVAVAGKHQVLIFVHSRKET 746 (2114)
Q Consensus 687 ~~~~--------f~~~~rpv---------~l~~~~~~--~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~vLVFv~sr~~~ 746 (2114)
.+.. .+.++... +-...... ............+ .+.+...+.++ ...++||||.|+..|
T Consensus 440 tvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h-~mdkaiifcrtk~dc 518 (725)
T KOG0349|consen 440 TVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH-AMDKAIIFCRTKQDC 518 (725)
T ss_pred hhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh-ccCceEEEEeccccc
Confidence 0000 00111000 00000000 0001111111111 11122222222 256899999999999
Q ss_pred HHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEe
Q 000129 747 AKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVS 826 (2114)
Q Consensus 747 ~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVa 826 (2114)
..+-+++.+.+-.. +.....||...+.+|..-++.|+.+..+.|||
T Consensus 519 DnLer~~~qkgg~~----------------------------------~scvclhgDrkP~Erk~nle~Fkk~dvkflic 564 (725)
T KOG0349|consen 519 DNLERMMNQKGGKH----------------------------------YSCVCLHGDRKPDERKANLESFKKFDVKFLIC 564 (725)
T ss_pred hHHHHHHHHcCCcc----------------------------------ceeEEEecCCChhHHHHHHHhhhhcCeEEEEE
Confidence 99999998765321 23456799999999999999999999999999
Q ss_pred chHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCC
Q 000129 827 TATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2114)
Q Consensus 827 T~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2114)
|+++|||+|+..+-++|+-|.|-+.. .|+||+||.||+- .-|.+|.++..
T Consensus 565 tdvaargldi~g~p~~invtlpd~k~----------nyvhrigrvgrae--rmglaislvat 614 (725)
T KOG0349|consen 565 TDVAARGLDITGLPFMINVTLPDDKT----------NYVHRIGRVGRAE--RMGLAISLVAT 614 (725)
T ss_pred ehhhhccccccCCceEEEEecCcccc----------hhhhhhhccchhh--hcceeEEEeec
Confidence 99999999999999999987776543 5999999999964 67888877543
No 208
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.84 E-value=1.3e-19 Score=249.03 Aligned_cols=327 Identities=14% Similarity=0.129 Sum_probs=195.5
Q ss_pred CCCHHHHHHHHHHH----cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000129 1341 HFNPIQTQVFTVLY----NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il----~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~ 1416 (2114)
.++++|.+|+..+. ++.++++|++|||||||.++...+.+.+.. ...+ ++|+|+|+++|+.|..+.|+. ++.
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~-~~~~--rVLfLvDR~~L~~Qa~~~F~~-~~~ 488 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKA-KRFR--RILFLVDRSALGEQAEDAFKD-TKI 488 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhc-CccC--eEEEEecHHHHHHHHHHHHHh-ccc
Confidence 58999999998875 355679999999999999875555444433 3334 999999999999999999884 432
Q ss_pred CCCcEEEEEcCCccc-chhhccCCcEEEEChhhHHHHHhhhc---ccccccceeEEEecccccccC------C---CCch
Q 000129 1417 GLGMRVVELTGETAM-DLKLLEKGQIIISTPEKWDALSRRWK---QRKYVQQVSLFIIDELHLIGG------Q---GGPV 1483 (2114)
Q Consensus 1417 ~~g~~v~~l~G~~~~-~~~~l~~~~IIV~TPe~l~~l~r~~~---~~~~l~~v~liIiDEaH~l~~------~---~g~~ 1483 (2114)
..+..+..+.+-... +...-..++|+|+|.+++...+.... ....+..+++||+||||+-.. . ....
T Consensus 489 ~~~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~ 568 (1123)
T PRK11448 489 EGDQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRD 568 (1123)
T ss_pred ccccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccch
Confidence 112121111111100 11111346999999998765432211 113567899999999997421 0 1111
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhcCCCCceeecC--------CCCC-ccCcEEEEe--ccc--c-
Q 000129 1484 LEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFP--------PGVR-PVPLEIHIQ--GVD--I- 1549 (2114)
Q Consensus 1484 le~i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~--------~~~r-pv~l~~~~~--~~~--~- 1549 (2114)
.....+..+.+.... +...||||||+.. ...+++|... ..|.+. ..+. |+.+...+. +.. .
T Consensus 569 ~~~~~~~yr~iL~yF--dA~~IGLTATP~r--~t~~~FG~pv-~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~ 643 (1123)
T PRK11448 569 QLDYVSKYRRVLDYF--DAVKIGLTATPAL--HTTEIFGEPV-YTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKG 643 (1123)
T ss_pred hhhHHHHHHHHHhhc--CccEEEEecCCcc--chhHHhCCee-EEeeHHHHHhcCCcccCcCCEEEEEEecccccccccc
Confidence 122345555555433 3578999999852 3455566321 111110 0000 111111100 000 0
Q ss_pred ---------------cchHH----HHHhcC---------HHHHHHHHHHhc--CCCCEEEEeCChHHHHHHHHHHHHhhc
Q 000129 1550 ---------------TNFEA----RMQAMT---------KPTFTAIVQHAK--NEKPALVFVPSRKYVRLTAVDLMTYSS 1599 (2114)
Q Consensus 1550 ---------------~~~~~----~~~~~~---------~~~~~~i~~~l~--~~~~~LVFv~sr~~a~~la~~L~~~~~ 1599 (2114)
..... ....+. +.+...+..++. ..+++||||.++.+|+.++..|.....
T Consensus 644 e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~ 723 (1123)
T PRK11448 644 EEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFK 723 (1123)
T ss_pred chhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHH
Confidence 00000 000011 111222333332 236899999999999988877754321
Q ss_pred cCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCc-eEEEecCccccccCCCCc
Q 000129 1600 MDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKI-KVCVMSSSMCWGVPLTAH 1678 (2114)
Q Consensus 1600 ~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i-~VLVaT~~la~Gvdip~~ 1678 (2114)
... .......+..+||+.+ ++..+++.|+++.. +|+|+++++.+|+|+|.+
T Consensus 724 ~~~--------------------------~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v 775 (1123)
T PRK11448 724 KKY--------------------------GQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSI 775 (1123)
T ss_pred hhc--------------------------CCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccc
Confidence 000 0000123556888875 56789999999987 799999999999999999
Q ss_pred EEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCC
Q 000129 1679 LVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPL 1714 (2114)
Q Consensus 1679 ~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~ 1714 (2114)
.+|| ....+.|...|+||+||+.|..
T Consensus 776 ~~vV----------f~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 776 CNLV----------FLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred cEEE----------EecCCCCHHHHHHHHhhhccCC
Confidence 9888 4556689999999999999963
No 209
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.84 E-value=7.2e-19 Score=236.30 Aligned_cols=324 Identities=19% Similarity=0.213 Sum_probs=193.1
Q ss_pred CCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHh
Q 000129 495 QLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~ 573 (2114)
.|.|+|..+...++.. ...+|+.-.+|-|||..+.+.+-..+..+. ..+++||+|. +|+.|+..++.++
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~---------~~rvLIVvP~-sL~~QW~~El~~k 221 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGR---------AERVLILVPE-TLQHQWLVEMLRR 221 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCC---------CCcEEEEcCH-HHHHHHHHHHHHH
Confidence 6999999998876654 346999999999999999776665554432 2279999997 8999999999876
Q ss_pred hccCCcEEEEEeCCCccC-----hhhhccceEEEcCHhHHHHHHhcc--CCCcccccccEEEEeccccccc--CCchhHH
Q 000129 574 LQMYDVKVRELSGDQTLT-----RQQIEETQIIVTTPEKWDIITRKS--GDRTYTQLVKLLIIDEIHLLHD--NRGPVLE 644 (2114)
Q Consensus 574 ~~~~gi~v~~l~Gd~~~~-----~~~~~~~~IiV~TPek~d~l~r~~--~~~~~l~~v~liIiDEaH~l~d--~rg~~le 644 (2114)
| ++.+..+.++.... .......+++|+|.+.+ .+.. .....-...++||+||||++.. ......-
T Consensus 222 F---~l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l---~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y 295 (956)
T PRK04914 222 F---NLRFSLFDEERYAEAQHDADNPFETEQLVICSLDFL---RRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREY 295 (956)
T ss_pred h---CCCeEEEcCcchhhhcccccCccccCcEEEEEHHHh---hhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHH
Confidence 6 34455444432110 12233578999998753 2211 0001123579999999999863 1111111
Q ss_pred HHHHHHHHHHhhccccccEEEEccccCC--hHH---------------HHHHHh-----------------ccc-c----
Q 000129 645 SIVARTVRQIETTKEHIRLVGLSATLPN--YED---------------VALFLR-----------------VNL-E---- 685 (2114)
Q Consensus 645 ~iv~rl~~~~~~~~~~~riv~lSATlpn--~~d---------------va~~l~-----------------~~~-~---- 685 (2114)
..+..+ . .....+++||||.-. .++ ...|.. ... .
T Consensus 296 ~~v~~L----a--~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~ 369 (956)
T PRK04914 296 QVVEQL----A--EVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDAL 369 (956)
T ss_pred HHHHHH----h--hccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHH
Confidence 222222 1 123467999999321 111 111110 000 0
Q ss_pred ------------------------------------------CceEeecCCcccc---c-ceeEEEeeccCchhHH----
Q 000129 686 ------------------------------------------KGLFYFDNSYRPV---P-LSQQYIGIQVKKPLQR---- 715 (2114)
Q Consensus 686 ------------------------------------------~~~~~f~~~~rpv---~-l~~~~~~~~~~~~~~~---- 715 (2114)
.+-+.|.....-+ | -..+.+.+........
T Consensus 370 ~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~ 449 (956)
T PRK04914 370 NALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKV 449 (956)
T ss_pred HHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHH
Confidence 0000111100000 0 0000011110000000
Q ss_pred ---------------HHHh------------hHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHH-hhccccccccc
Q 000129 716 ---------------FQLM------------NDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDT-ALENDTLGRFL 767 (2114)
Q Consensus 716 ---------------~~~~------------~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~-~~~~~~l~~~l 767 (2114)
+..+ .+.+.+ +.+...+.++||||+++..+..++..|+.. +
T Consensus 450 ~~~~~~~~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~-~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~G---------- 518 (956)
T PRK04914 450 SLEARARDMLYPEQIYQEFEDNATWWNFDPRVEWLID-FLKSHRSEKVLVICAKAATALQLEQALREREG---------- 518 (956)
T ss_pred hHHHHHHhhcCHHHHHHHHhhhhhccccCHHHHHHHH-HHHhcCCCeEEEEeCcHHHHHHHHHHHhhccC----------
Confidence 0000 001111 222233679999999999999999988542 2
Q ss_pred ccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCC--CceEEEechHhhhhcCCCceEEEEec
Q 000129 768 KEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDG--HVQVLVSTATLAWGVNLPAHTVIIKG 845 (2114)
Q Consensus 768 ~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g--~i~VLVaT~tla~GVdlP~v~vVI~~ 845 (2114)
..+..+||+|+..+|..+.+.|+++ ..+|||||+++++|+|++.+++||++
T Consensus 519 ---------------------------i~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInf 571 (956)
T PRK04914 519 ---------------------------IRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLF 571 (956)
T ss_pred ---------------------------eeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEe
Confidence 2245679999999999999999974 69999999999999999999999996
Q ss_pred ceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCC
Q 000129 846 TQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2114)
Q Consensus 846 ~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2114)
+.|++| ..|.||+||+||.|..+.-..++.+..
T Consensus 572 DlP~nP----------~~~eQRIGR~~RiGQ~~~V~i~~~~~~ 604 (956)
T PRK04914 572 DLPFNP----------DLLEQRIGRLDRIGQKHDIQIHVPYLE 604 (956)
T ss_pred cCCCCH----------HHHHHHhcccccCCCCceEEEEEccCC
Confidence 555554 579999999999985433333333333
No 210
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.84 E-value=1.7e-19 Score=247.97 Aligned_cols=324 Identities=18% Similarity=0.225 Sum_probs=187.8
Q ss_pred CCCHHHHHHHHHHH----cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 495 QLNRVQSRVYKSAL----SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l----~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.++++|.+|+..+. .+.++.|+++|||||||.+++..+.+.+... ...++|+++|+++|+.|..+.|
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~---------~~~rVLfLvDR~~L~~Qa~~~F 483 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAK---------RFRRILFLVDRSALGEQAEDAF 483 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcC---------ccCeEEEEecHHHHHHHHHHHH
Confidence 58999999998765 3456799999999999998765554443322 1238999999999999999999
Q ss_pred HHhhccCCcEEEEEeCCCccChh-hhccceEEEcCHhHH-HHHHhcc--CCCcccccccEEEEeccccccc-C--Cc---
Q 000129 571 SNRLQMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW-DIITRKS--GDRTYTQLVKLLIIDEIHLLHD-N--RG--- 640 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~-~~~~~~IiV~TPek~-d~l~r~~--~~~~~l~~v~liIiDEaH~l~d-~--rg--- 640 (2114)
.......+..+....+-..+... .....+|+|+|..++ ..+.... .....+..+++|||||||+-.. + .+
T Consensus 484 ~~~~~~~~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~ 563 (1123)
T PRK11448 484 KDTKIEGDQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGE 563 (1123)
T ss_pred HhcccccccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccch
Confidence 87532222122112211111111 123579999999986 2222211 1113467789999999998421 0 00
Q ss_pred ---hhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeec-------C---Ccc-cccceeEE--
Q 000129 641 ---PVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFD-------N---SYR-PVPLSQQY-- 704 (2114)
Q Consensus 641 ---~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~-------~---~~r-pv~l~~~~-- 704 (2114)
.............+.. .+...|||||| |.. ....+++. +++.++ + .+. |......+
T Consensus 564 ~~~~~~~~~~~~yr~iL~y--FdA~~IGLTAT-P~r-~t~~~FG~----pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~ 635 (1123)
T PRK11448 564 LQFRDQLDYVSKYRRVLDY--FDAVKIGLTAT-PAL-HTTEIFGE----PVYTYSYREAVIDGYLIDHEPPIRIETRLSQ 635 (1123)
T ss_pred hccchhhhHHHHHHHHHhh--cCccEEEEecC-Ccc-chhHHhCC----eeEEeeHHHHHhcCCcccCcCCEEEEEEecc
Confidence 0001112222222221 13567999999 432 22333332 111100 0 000 11110000
Q ss_pred Eeec--cC---------c-h------hH----HHHH---------hhHHHHHHHHHHh---CCCeEEEEecChHHHHHHH
Q 000129 705 IGIQ--VK---------K-P------LQ----RFQL---------MNDLCYEKVVAVA---GKHQVLIFVHSRKETAKTA 750 (2114)
Q Consensus 705 ~~~~--~~---------~-~------~~----~~~~---------~~~~~~~~i~~~~---~~~~vLVFv~sr~~~~~~a 750 (2114)
.|+. .. . . .. .... .++.+.+.+.++. ..+++||||.++..|..++
T Consensus 636 ~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~ 715 (1123)
T PRK11448 636 EGIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVV 715 (1123)
T ss_pred ccccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHH
Confidence 0000 00 0 0 00 0001 1112222233322 2479999999999999999
Q ss_pred HHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCc-eEEEechH
Q 000129 751 RAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV-QVLVSTAT 829 (2114)
Q Consensus 751 ~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i-~VLVaT~t 829 (2114)
..|.+....... ..-...+...||+++ ++..+++.|+++.. +|+|++++
T Consensus 716 ~~L~~~f~~~~~----------------------------~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdm 765 (1123)
T PRK11448 716 RLLKEAFKKKYG----------------------------QVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDL 765 (1123)
T ss_pred HHHHHHHHhhcC----------------------------CcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecc
Confidence 988764311000 000112344577765 56789999999887 79999999
Q ss_pred hhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCC
Q 000129 830 LAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQ 875 (2114)
Q Consensus 830 la~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g 875 (2114)
+.+|+|+|.+.+||. +.|.. |...|+||+||+.|.-
T Consensus 766 L~TG~DvP~v~~vVf----~rpvk------S~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 766 LTTGIDVPSICNLVF----LRRVR------SRILYEQMLGRATRLC 801 (1123)
T ss_pred cccCCCcccccEEEE----ecCCC------CHHHHHHHHhhhccCC
Confidence 999999999999986 56655 8889999999999964
No 211
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.83 E-value=1.5e-19 Score=208.86 Aligned_cols=184 Identities=21% Similarity=0.283 Sum_probs=143.8
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
+|+.+...+ .|++.|+++|.++++.+++ ++|++++||||+|||++++++++..+..... ..+++++|++|+
T Consensus 6 ~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~------~~~~~viii~p~ 78 (203)
T cd00268 6 LSPELLRGIYALGFEKPTPIQARAIPPLLS-GRDVIGQAQTGSGKTAAFLIPILEKLDPSPK------KDGPQALILAPT 78 (203)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhc-CCcEEEECCCCCcHHHHHHHHHHHHHHhhcc------cCCceEEEEcCC
Confidence 344555555 5899999999999999887 4679999999999999999999998876521 134689999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCccChh--hh-ccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccc
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QI-EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~--~~-~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (2114)
++|+.|+...+..+....++++..++|+...... .. .+++|+|+||+++..+.+... ..+++++++|+||+|.+.
T Consensus 79 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~--~~~~~l~~lIvDE~h~~~ 156 (203)
T cd00268 79 RELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGK--LDLSKVKYLVLDEADRML 156 (203)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC--CChhhCCEEEEeChHHhh
Confidence 9999999999998877778999999998765432 12 378999999999855444433 567889999999999987
Q ss_pred c-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhcc
Q 000129 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN 683 (2114)
Q Consensus 637 d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~ 683 (2114)
+ .++..+..++.++ ....+++++|||++ .++..++...
T Consensus 157 ~~~~~~~~~~~~~~l-------~~~~~~~~~SAT~~--~~~~~~~~~~ 195 (203)
T cd00268 157 DMGFEDQIREILKLL-------PKDRQTLLFSATMP--KEVRDLARKF 195 (203)
T ss_pred ccChHHHHHHHHHhC-------CcccEEEEEeccCC--HHHHHHHHHH
Confidence 6 4566666555433 45899999999998 4555655543
No 212
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=8e-19 Score=228.74 Aligned_cols=127 Identities=17% Similarity=0.128 Sum_probs=98.4
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.+.++|--.--. ++.+ -|..++||+|||++|.+|++..+..+ ..+.+++|++.||.|.++.+..++
T Consensus 82 ~~ydvQliGg~~-Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al~G-----------~~V~VvTpn~yLA~qd~e~m~~l~ 147 (896)
T PRK13104 82 RHFDVQLIGGMV-LHEG--NIAEMRTGEGKTLVATLPAYLNAISG-----------RGVHIVTVNDYLAKRDSQWMKPIY 147 (896)
T ss_pred CcchHHHhhhhh-hccC--ccccccCCCCchHHHHHHHHHHHhcC-----------CCEEEEcCCHHHHHHHHHHHHHHh
Confidence 456677655433 3333 48899999999999999999776543 258999999999999999999999
Q ss_pred ccCCcEEEEEeCCCccChhh-hccceEEEcCHhHH--HHHHhccCC---CcccccccEEEEeccccc
Q 000129 575 QMYDVKVRELSGDQTLTRQQ-IEETQIIVTTPEKW--DIITRKSGD---RTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~-~~~~~IiV~TPek~--d~l~r~~~~---~~~l~~v~liIiDEaH~l 635 (2114)
..+|++|+.++|+.+...+. .-.++|+|+||+++ |.+...... ......+.++||||||.+
T Consensus 148 ~~lGLtv~~i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsi 214 (896)
T PRK13104 148 EFLGLTVGVIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSI 214 (896)
T ss_pred cccCceEEEEeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhh
Confidence 99999999999987755432 34789999999995 666554221 112367899999999976
No 213
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.82 E-value=3.2e-18 Score=230.17 Aligned_cols=326 Identities=16% Similarity=0.176 Sum_probs=199.3
Q ss_pred CCCCHHHHHHHHHHHc-CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000129 1340 KHFNPIQTQVFTVLYN-TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il~-~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~ 1418 (2114)
-.|.|+|..+...++. ....+|++-+.|-|||+.+.+.+-..+.. ...+ ++|||||. .|+.|+..++.++|+
T Consensus 151 ~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~-g~~~--rvLIVvP~-sL~~QW~~El~~kF~--- 223 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT-GRAE--RVLILVPE-TLQHQWLVEMLRRFN--- 223 (956)
T ss_pred CCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc-CCCC--cEEEEcCH-HHHHHHHHHHHHHhC---
Confidence 3699999999888764 23469999999999999996665554444 3334 89999997 899999999987775
Q ss_pred CcEEEEEcCCcccc-----hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCC-CCchHHHHHHHHH
Q 000129 1419 GMRVVELTGETAMD-----LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGPVLEVIVSRMR 1492 (2114)
Q Consensus 1419 g~~v~~l~G~~~~~-----~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~-~g~~le~i~srl~ 1492 (2114)
+.+..+.++.... ...+...+++|+|.+.+..-- .+.....-...++||+||||++... ..+.- ....++
T Consensus 224 -l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~-~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~--~y~~v~ 299 (956)
T PRK04914 224 -LRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNK-QRLEQALAAEWDLLVVDEAHHLVWSEEAPSR--EYQVVE 299 (956)
T ss_pred -CCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCH-HHHHHHhhcCCCEEEEechhhhccCCCCcCH--HHHHHH
Confidence 3444444432111 123345689999977643211 1111111236899999999999632 11211 122333
Q ss_pred HHHhhcCCCceEEEEcccCCC--hhHH---------------HHHhc-----------------CCC-C--------ce-
Q 000129 1493 YIASQVENKIRIVALSTSLAN--AKDL---------------GEWIG-----------------ATS-H--------GL- 1528 (2114)
Q Consensus 1493 ~i~~~~~~~~riV~lSATl~n--~~dl---------------a~wl~-----------------~~~-~--------~~- 1528 (2114)
.+.. ....+++||||+-. ..++ ..|.. ... . .+
T Consensus 300 ~La~---~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll 376 (956)
T PRK04914 300 QLAE---VIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELL 376 (956)
T ss_pred HHhh---ccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHh
Confidence 3322 23468999999853 1111 11110 000 0 00
Q ss_pred --------------------------------------eecCCC---CCccC-cEEEEeccccc-chHHHH---------
Q 000129 1529 --------------------------------------FNFPPG---VRPVP-LEIHIQGVDIT-NFEARM--------- 1556 (2114)
Q Consensus 1529 --------------------------------------~~f~~~---~rpv~-l~~~~~~~~~~-~~~~~~--------- 1556 (2114)
+-|... +...| -..+......+ .+....
T Consensus 377 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~ 456 (956)
T PRK04914 377 GEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARAR 456 (956)
T ss_pred cccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHH
Confidence 000000 00000 00000001100 010000
Q ss_pred ---------Hh-------c-CHHHHHHHHHHh--cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccch
Q 000129 1557 ---------QA-------M-TKPTFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVE 1617 (2114)
Q Consensus 1557 ---------~~-------~-~~~~~~~i~~~l--~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~ 1617 (2114)
.. . ..+....+...+ ....++||||+++..+..++..|..
T Consensus 457 ~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~--------------------- 515 (956)
T PRK04914 457 DMLYPEQIYQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALRE--------------------- 515 (956)
T ss_pred hhcCHHHHHHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhh---------------------
Confidence 00 0 011122222222 2357899999999999888865522
Q ss_pred hhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcC--CceEEEecCccccccCCCCcEEEEEeeeEecCCcCcC
Q 000129 1618 PFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAG--KIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAH 1695 (2114)
Q Consensus 1618 ~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g--~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~ 1695 (2114)
..+..+..+||+|+..+|..+.+.|+++ ..+|||||+++++|+|++.+.+|| +++
T Consensus 516 -------------~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VI----------nfD 572 (956)
T PRK04914 516 -------------REGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLV----------LFD 572 (956)
T ss_pred -------------ccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEE----------Eec
Confidence 1244578899999999999999999984 699999999999999999999999 899
Q ss_pred CCCCHhHHHHhHcccCCCCCCCceEEEEEe
Q 000129 1696 TDYPVTDLLQMMGHASRPLLDNSGKCVILC 1725 (2114)
Q Consensus 1696 ~~~s~~~~lQr~GRAGR~~~~~~G~~iil~ 1725 (2114)
.|.++..|.||+||+||.| ..|.+.+++
T Consensus 573 lP~nP~~~eQRIGR~~RiG--Q~~~V~i~~ 600 (956)
T PRK04914 573 LPFNPDLLEQRIGRLDRIG--QKHDIQIHV 600 (956)
T ss_pred CCCCHHHHHHHhcccccCC--CCceEEEEE
Confidence 9999999999999999985 444444443
No 214
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=1.7e-18 Score=225.23 Aligned_cols=352 Identities=17% Similarity=0.213 Sum_probs=217.7
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.|+++|--.--. ++.+. |....||+|||+++.+|++.....+. .+-+++|+--||.+-++.+..++
T Consensus 80 ~~~dvQlig~l~-l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~-----------~v~vvT~neyLA~Rd~e~~~~~~ 145 (796)
T PRK12906 80 RPFDVQIIGGIV-LHEGN--IAEMKTGEGKTLTATLPVYLNALTGK-----------GVHVVTVNEYLSSRDATEMGELY 145 (796)
T ss_pred CCchhHHHHHHH-HhcCC--cccccCCCCCcHHHHHHHHHHHHcCC-----------CeEEEeccHHHHHhhHHHHHHHH
Confidence 577888776554 44333 88999999999999999988877653 68899999999999999999999
Q ss_pred ccCCcEEEEEeCCCccCh-hhhccceEEEcCHhHH--HHHHhcc---CCCcccccccEEEEecccccc-c-CCch-----
Q 000129 575 QMYDVKVRELSGDQTLTR-QQIEETQIIVTTPEKW--DIITRKS---GDRTYTQLVKLLIIDEIHLLH-D-NRGP----- 641 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~-~~~~~~~IiV~TPek~--d~l~r~~---~~~~~l~~v~liIiDEaH~l~-d-~rg~----- 641 (2114)
..+|++|+.++|+.+... +..-.++|+++|...+ |.|.-+. ........+.+.||||||.++ | .|.|
T Consensus 146 ~~LGl~vg~i~~~~~~~~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg 225 (796)
T PRK12906 146 RWLGLTVGLNLNSMSPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISG 225 (796)
T ss_pred HhcCCeEEEeCCCCCHHHHHHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCC
Confidence 999999999999865543 3456899999999875 5444332 122234567899999999652 2 1211
Q ss_pred ---h---HHHHHHHHHHHHhhc----------------cccccEEEEccc----------cCCh---H--HHHHHHhccc
Q 000129 642 ---V---LESIVARTVRQIETT----------------KEHIRLVGLSAT----------LPNY---E--DVALFLRVNL 684 (2114)
Q Consensus 642 ---~---le~iv~rl~~~~~~~----------------~~~~riv~lSAT----------lpn~---~--dva~~l~~~~ 684 (2114)
. +-..+.++...+... ....+.+.++.. ++|. + .+..|+....
T Consensus 226 ~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al 305 (796)
T PRK12906 226 QAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQAL 305 (796)
T ss_pred CCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHH
Confidence 1 111122222211110 011222333310 1210 0 1122221100
Q ss_pred ---------------cCceEeecCC-ccccc-------------------------------------cee---------
Q 000129 685 ---------------EKGLFYFDNS-YRPVP-------------------------------------LSQ--------- 702 (2114)
Q Consensus 685 ---------------~~~~~~f~~~-~rpv~-------------------------------------l~~--------- 702 (2114)
...+..++.. -|..+ +..
T Consensus 306 ~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa 385 (796)
T PRK12906 306 RANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTA 385 (796)
T ss_pred HHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCC
Confidence 0001111000 00000 000
Q ss_pred -------------EEEeeccCch--------------hHHHHHhhHHHHHHHH-HHhCCCeEEEEecChHHHHHHHHHHH
Q 000129 703 -------------QYIGIQVKKP--------------LQRFQLMNDLCYEKVV-AVAGKHQVLIFVHSRKETAKTARAIR 754 (2114)
Q Consensus 703 -------------~~~~~~~~~~--------------~~~~~~~~~~~~~~i~-~~~~~~~vLVFv~sr~~~~~~a~~L~ 754 (2114)
.++.++..++ ..+.. .+.+.+. .+..+.|+||||+|+..++.++..|.
T Consensus 386 ~~e~~Ef~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~----al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~ 461 (796)
T PRK12906 386 KTEEEEFREIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFN----AVVKEIKERHAKGQPVLVGTVAIESSERLSHLLD 461 (796)
T ss_pred HHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEcCHHHHHH----HHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHH
Confidence 0111111111 11111 1222232 23457899999999999999999998
Q ss_pred HHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhc
Q 000129 755 DTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGV 834 (2114)
Q Consensus 755 ~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GV 834 (2114)
..+... ..+||.+...++..+.++++.|. |+|||++++||.
T Consensus 462 ~~gi~~-------------------------------------~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGt 502 (796)
T PRK12906 462 EAGIPH-------------------------------------AVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGT 502 (796)
T ss_pred HCCCCe-------------------------------------eEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCC
Confidence 765432 45599999888888888888886 999999999999
Q ss_pred CCC---ceE-----EEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCc-HH------HHHHhh-
Q 000129 835 NLP---AHT-----VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE-LR------YYLSLM- 898 (2114)
Q Consensus 835 dlP---~v~-----vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e-~~------~~~~ll- 898 (2114)
|++ ++. +||+ ++.+. |...+.|+.|||||.| .+|.+..+++-++ +- .+.+++
T Consensus 503 DI~l~~~V~~~GGLhVI~----te~pe------s~ri~~Ql~GRtGRqG--~~G~s~~~~sleD~l~~~f~~~~~~~~~~ 570 (796)
T PRK12906 503 DIKLGPGVKELGGLAVIG----TERHE------SRRIDNQLRGRSGRQG--DPGSSRFYLSLEDDLMRRFGSDRVKAFLD 570 (796)
T ss_pred CCCCCcchhhhCCcEEEe----eecCC------cHHHHHHHhhhhccCC--CCcceEEEEeccchHHHhhCcHHHHHHHH
Confidence 994 888 8998 55443 6778999999999988 7899988887653 11 122232
Q ss_pred -----cCCCcccchhhHhhHHH
Q 000129 899 -----NQQLPIESQFVSKLADQ 915 (2114)
Q Consensus 899 -----~~~~pies~l~~~l~d~ 915 (2114)
....||++.+.....+.
T Consensus 571 ~~~~~~~~~~i~~~~~~~~i~~ 592 (796)
T PRK12906 571 RLGMNDDDQVIESRMITRQVES 592 (796)
T ss_pred HcCCCCCCCcccchHHHHHHHH
Confidence 33568888876654443
No 215
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.81 E-value=4.2e-19 Score=205.21 Aligned_cols=174 Identities=24% Similarity=0.372 Sum_probs=135.4
Q ss_pred hHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHH
Q 000129 1330 PLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYR 1408 (2114)
Q Consensus 1330 ~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~ 1408 (2114)
..++.+.. |+..|+++|.++++.+++ ++|++++||||+|||++|.++++..+......++++++|++|+++|+.|+.+
T Consensus 9 ~i~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~ 87 (203)
T cd00268 9 ELLRGIYALGFEKPTPIQARAIPPLLS-GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAE 87 (203)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHhc-CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHH
Confidence 34445543 689999999999999998 5679999999999999999999999888421233499999999999999999
Q ss_pred HHHHHhcCCCCcEEEEEcCCcccc--hhhcc-CCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHH
Q 000129 1409 DWEIKFGQGLGMRVVELTGETAMD--LKLLE-KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLE 1485 (2114)
Q Consensus 1409 ~~~~~f~~~~g~~v~~l~G~~~~~--~~~l~-~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le 1485 (2114)
.++. +....++++..++|+.... ...+. +++|+|+||+++..++.+. ...+.+++++|+||+|.+.+..
T Consensus 88 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~l~~lIvDE~h~~~~~~----- 159 (203)
T cd00268 88 VARK-LGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERG--KLDLSKVKYLVLDEADRMLDMG----- 159 (203)
T ss_pred HHHH-HhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcC--CCChhhCCEEEEeChHHhhccC-----
Confidence 9984 6555688999999987653 22333 6799999999998888763 3567899999999999987443
Q ss_pred HHHHHHHHHHhhcCCCceEEEEcccCCC
Q 000129 1486 VIVSRMRYIASQVENKIRIVALSTSLAN 1513 (2114)
Q Consensus 1486 ~i~srl~~i~~~~~~~~riV~lSATl~n 1513 (2114)
+...+..+...++.+.+++++|||+++
T Consensus 160 -~~~~~~~~~~~l~~~~~~~~~SAT~~~ 186 (203)
T cd00268 160 -FEDQIREILKLLPKDRQTLLFSATMPK 186 (203)
T ss_pred -hHHHHHHHHHhCCcccEEEEEeccCCH
Confidence 112222233334568999999999985
No 216
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.80 E-value=1e-18 Score=235.50 Aligned_cols=328 Identities=20% Similarity=0.248 Sum_probs=203.9
Q ss_pred CCHHHHHHHHHHHcC--CC-cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000129 496 LNRVQSRVYKSALSS--AD-NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2114)
Q Consensus 496 l~~iQ~~~i~~~l~~--~~-nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (2114)
..+.|..++..+... .. .+++.||||+|||.+++.+++..+..+.. ...+++|+.|+++++.++++++..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~-------~~~r~i~vlP~~t~ie~~~~r~~~ 268 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIK-------LKSRVIYVLPFRTIIEDMYRRAKE 268 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcccc-------ccceEEEEccHHHHHHHHHHHHHh
Confidence 488999999888754 23 68999999999999999999888766311 245899999999999999999998
Q ss_pred hhccCCcEEEEEeCCCccCh----hh-------------hccceEEEcCHhHHHHH-HhccCCCc-ccccccEEEEeccc
Q 000129 573 RLQMYDVKVRELSGDQTLTR----QQ-------------IEETQIIVTTPEKWDII-TRKSGDRT-YTQLVKLLIIDEIH 633 (2114)
Q Consensus 573 ~~~~~gi~v~~l~Gd~~~~~----~~-------------~~~~~IiV~TPek~d~l-~r~~~~~~-~l~~v~liIiDEaH 633 (2114)
.++..++....++|.....- .. ..-..++++||-.+-.. ........ ..-..+++|+||+|
T Consensus 269 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h 348 (733)
T COG1203 269 IFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVH 348 (733)
T ss_pred hhcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHH
Confidence 87654443332344322110 00 11234555666543221 11111110 00124789999999
Q ss_pred ccccCCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceE-eecCCcccccceeEEEeeccCch
Q 000129 634 LLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLF-YFDNSYRPVPLSQQYIGIQVKKP 712 (2114)
Q Consensus 634 ~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~-~f~~~~rpv~l~~~~~~~~~~~~ 712 (2114)
.+.++. .-.++..++.... ..+.++|+||||+|. .+.+.+......+.. ..... .++..... .+.....
T Consensus 349 ~~~~~~---~~~~l~~~i~~l~--~~g~~ill~SATlP~--~~~~~l~~~~~~~~~~~~~~~--~~~~~~e~-~~~~~~~ 418 (733)
T COG1203 349 LYADET---MLAALLALLEALA--EAGVPVLLMSATLPP--FLKEKLKKALGKGREVVENAK--FCPKEDEP-GLKRKER 418 (733)
T ss_pred hhcccc---hHHHHHHHHHHHH--hCCCCEEEEecCCCH--HHHHHHHHHHhcccceecccc--cccccccc-ccccccc
Confidence 998763 2222233333222 357889999999995 344444332222111 11111 11111100 0000000
Q ss_pred hHHHHHhhHHHHHHH-HHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhh
Q 000129 713 LQRFQLMNDLCYEKV-VAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791 (2114)
Q Consensus 713 ~~~~~~~~~~~~~~i-~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ 791 (2114)
..............+ .....+++++|-|||.+.|.+++..|++.+.
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~--------------------------------- 465 (733)
T COG1203 419 VDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGP--------------------------------- 465 (733)
T ss_pred hhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCC---------------------------------
Confidence 000000000011112 2233478999999999999999999987542
Q ss_pred hccCceEEecCCCCHHHHHHHHHHH----hCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHh
Q 000129 792 LLPYGFAIHHAGMTRGDRQLVEDLF----GDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQM 867 (2114)
Q Consensus 792 ll~~gv~~hHagl~~~~R~~v~~~F----~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr 867 (2114)
.+..+||.++..+|...++.+ +.+...|+|||++.+.|||+. .+++|- ++. ++.+++||
T Consensus 466 ----~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mIT-----e~a-------PidSLIQR 528 (733)
T COG1203 466 ----KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLIT-----ELA-------PIDSLIQR 528 (733)
T ss_pred ----CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeee-----cCC-------CHHHHHHH
Confidence 256679999999999888754 457889999999999999995 777773 332 56789999
Q ss_pred hcccCCCCCCCceEEEEEcCCCc
Q 000129 868 LGRAGRPQYDSYGEGIIITGHSE 890 (2114)
Q Consensus 868 ~GRAGR~g~d~~G~~iil~~~~e 890 (2114)
+||++|-|.+..|..++......
T Consensus 529 ~GRv~R~g~~~~~~~~v~~~~~~ 551 (733)
T COG1203 529 AGRVNRHGKKENGKIYVYNDEER 551 (733)
T ss_pred HHHHhhcccccCCceeEeecccC
Confidence 99999998777788888766543
No 217
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.80 E-value=5.1e-19 Score=198.11 Aligned_cols=158 Identities=30% Similarity=0.475 Sum_probs=125.8
Q ss_pred CHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhcc
Q 000129 497 NRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQM 576 (2114)
Q Consensus 497 ~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~ 576 (2114)
||+|.++++.++ ++++++++||||+|||+++++++++.+.... ..+++|++|+++|+.|+++++.+.+..
T Consensus 1 t~~Q~~~~~~i~-~~~~~li~aptGsGKT~~~~~~~l~~~~~~~---------~~~~lii~P~~~l~~q~~~~~~~~~~~ 70 (169)
T PF00270_consen 1 TPLQQEAIEAII-SGKNVLISAPTGSGKTLAYILPALNRLQEGK---------DARVLIIVPTRALAEQQFERLRKFFSN 70 (169)
T ss_dssp -HHHHHHHHHHH-TTSEEEEECSTTSSHHHHHHHHHHHHHHTTS---------SSEEEEEESSHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHH-cCCCEEEECCCCCccHHHHHHHHHhhhccCC---------CceEEEEeecccccccccccccccccc
Confidence 689999999988 5577999999999999999999999887652 238999999999999999999999888
Q ss_pred CCcEEEEEeCCCccChh---hh-ccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-CCchhHHHHHHHHH
Q 000129 577 YDVKVRELSGDQTLTRQ---QI-EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTV 651 (2114)
Q Consensus 577 ~gi~v~~l~Gd~~~~~~---~~-~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~rl~ 651 (2114)
.++++..++|+...... .. .+++|+|+||+++..+.+... ..+.++++|||||+|.+.+ .++..+..++.++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~--~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~- 147 (169)
T PF00270_consen 71 TNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGK--INISRLSLIVIDEAHHLSDETFRAMLKSILRRL- 147 (169)
T ss_dssp TTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTS--STGTTESEEEEETHHHHHHTTHHHHHHHHHHHS-
T ss_pred cccccccccccccccccccccccccccccccCcchhhccccccc--cccccceeeccCcccccccccHHHHHHHHHHHh-
Confidence 78899999998875422 12 469999999999855555432 2445599999999999987 4566555555443
Q ss_pred HHHhhccccccEEEEccccC
Q 000129 652 RQIETTKEHIRLVGLSATLP 671 (2114)
Q Consensus 652 ~~~~~~~~~~riv~lSATlp 671 (2114)
.. ..+.+++++|||++
T Consensus 148 ---~~-~~~~~~i~~SAT~~ 163 (169)
T PF00270_consen 148 ---KR-FKNIQIILLSATLP 163 (169)
T ss_dssp ---HT-TTTSEEEEEESSST
T ss_pred ---cC-CCCCcEEEEeeCCC
Confidence 22 23688999999987
No 218
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.79 E-value=1.6e-18 Score=194.14 Aligned_cols=158 Identities=30% Similarity=0.514 Sum_probs=123.8
Q ss_pred CHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEE
Q 000129 1343 NPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRV 1422 (2114)
Q Consensus 1343 ~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v 1422 (2114)
||+|.++++.++ +++++++.||||||||+++.+++++.+.+. ..+ +++|++|+++|+.|+++++.+.+.. .+.++
T Consensus 1 t~~Q~~~~~~i~-~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~--~~lii~P~~~l~~q~~~~~~~~~~~-~~~~~ 75 (169)
T PF00270_consen 1 TPLQQEAIEAII-SGKNVLISAPTGSGKTLAYILPALNRLQEG-KDA--RVLIIVPTRALAEQQFERLRKFFSN-TNVRV 75 (169)
T ss_dssp -HHHHHHHHHHH-TTSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSS--EEEEEESSHHHHHHHHHHHHHHTTT-TTSSE
T ss_pred CHHHHHHHHHHH-cCCCEEEECCCCCccHHHHHHHHHhhhccC-CCc--eEEEEeecccccccccccccccccc-ccccc
Confidence 699999999999 467799999999999999999999998884 344 9999999999999999999965554 57889
Q ss_pred EEEcCCcccc---hhhc-cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCC-CCchHHHHHHHHHHHHhh
Q 000129 1423 VELTGETAMD---LKLL-EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGPVLEVIVSRMRYIASQ 1497 (2114)
Q Consensus 1423 ~~l~G~~~~~---~~~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~-~g~~le~i~srl~~i~~~ 1497 (2114)
..++|+...+ ...+ ..++|+|+||+++..+++.+.. .+.++++||+||+|.+..+ .+..+..++.+++ .
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~--~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~----~ 149 (169)
T PF00270_consen 76 VLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKI--NISRLSLIVIDEAHHLSDETFRAMLKSILRRLK----R 149 (169)
T ss_dssp EEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSS--TGTTESEEEEETHHHHHHTTHHHHHHHHHHHSH----T
T ss_pred ccccccccccccccccccccccccccCcchhhcccccccc--ccccceeeccCcccccccccHHHHHHHHHHHhc----C
Confidence 9999987643 2233 4689999999999998887333 5666999999999999764 2333333333221 1
Q ss_pred cCCCceEEEEcccCC
Q 000129 1498 VENKIRIVALSTSLA 1512 (2114)
Q Consensus 1498 ~~~~~riV~lSATl~ 1512 (2114)
..+.++|++|||++
T Consensus 150 -~~~~~~i~~SAT~~ 163 (169)
T PF00270_consen 150 -FKNIQIILLSATLP 163 (169)
T ss_dssp -TTTSEEEEEESSST
T ss_pred -CCCCcEEEEeeCCC
Confidence 23689999999997
No 219
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=1.2e-17 Score=217.85 Aligned_cols=112 Identities=20% Similarity=0.158 Sum_probs=87.9
Q ss_pred EEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchh-hccC
Q 000129 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK-LLEK 1438 (2114)
Q Consensus 1360 vli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~-~l~~ 1438 (2114)
-|..++||+|||++|.+|++..... +. .+++++|+++||.|.++.+. .+.+.+|++|+.++|+.+...+ ..-.
T Consensus 98 ~Iaem~TGeGKTL~a~Lpa~~~al~---G~--~V~VvTpn~yLA~qd~e~m~-~l~~~lGLtv~~i~gg~~~~~r~~~y~ 171 (896)
T PRK13104 98 NIAEMRTGEGKTLVATLPAYLNAIS---GR--GVHIVTVNDYLAKRDSQWMK-PIYEFLGLTVGVIYPDMSHKEKQEAYK 171 (896)
T ss_pred ccccccCCCCchHHHHHHHHHHHhc---CC--CEEEEcCCHHHHHHHHHHHH-HHhcccCceEEEEeCCCCHHHHHHHhC
Confidence 4889999999999999999976654 33 68999999999999999887 5666679999999998765533 3336
Q ss_pred CcEEEEChhhH-HHHHhhhccc----ccccceeEEEeccccccc
Q 000129 1439 GQIIISTPEKW-DALSRRWKQR----KYVQQVSLFIIDELHLIG 1477 (2114)
Q Consensus 1439 ~~IIV~TPe~l-~~l~r~~~~~----~~l~~v~liIiDEaH~l~ 1477 (2114)
++|+|+||+++ ..+++..... ...+.+.++||||||.++
T Consensus 172 ~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 172 ADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSIL 215 (896)
T ss_pred CCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhh
Confidence 79999999997 6666652111 123579999999999553
No 220
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.78 E-value=5e-18 Score=228.86 Aligned_cols=327 Identities=20% Similarity=0.229 Sum_probs=207.5
Q ss_pred CCHHHHHHHHHHHcC--CC-cEEEEecCCCchHHHHHHHHHHHhhhc-cCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1342 FNPIQTQVFTVLYNT--DD-NVLVAAPTGSGKTICSEFAILRNHQKA-SETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1342 ~~~iQ~q~~~~il~~--~~-nvli~ApTGSGKTl~~~l~il~~l~~~-~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
..+.|..++..+... .. .+++.||||+|||.+++.+.+..+... ...+ |++|+.|++.++.+++++++..++..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~--r~i~vlP~~t~ie~~~~r~~~~~~~~ 273 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKS--RVIYVLPFRTIIEDMYRRAKEIFGLF 273 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccc--eEEEEccHHHHHHHHHHHHHhhhccc
Confidence 388999999987642 23 789999999999999988888777662 2233 99999999999999999999766543
Q ss_pred CCcEEEE-EcCCcccchh-----------------hccCCcEEEEChhhHHHHHhhhcccccc--cceeEEEeccccccc
Q 000129 1418 LGMRVVE-LTGETAMDLK-----------------LLEKGQIIISTPEKWDALSRRWKQRKYV--QQVSLFIIDELHLIG 1477 (2114)
Q Consensus 1418 ~g~~v~~-l~G~~~~~~~-----------------~l~~~~IIV~TPe~l~~l~r~~~~~~~l--~~v~liIiDEaH~l~ 1477 (2114)
..... ++|....... ...-..++++||-++....-.......+ -..+++|+||+|.+.
T Consensus 274 --~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~ 351 (733)
T COG1203 274 --SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYA 351 (733)
T ss_pred --ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhc
Confidence 12222 3443222100 0011156666666654421111111111 235799999999997
Q ss_pred CCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCCh--hHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHH
Q 000129 1478 GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEAR 1555 (2114)
Q Consensus 1478 ~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~--~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~ 1555 (2114)
++. .+..+..-+..+. ..+..+|++|||+|.. +.+...++.......+.. .-+..-+..+...........
T Consensus 352 ~~~--~~~~l~~~i~~l~---~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~--~~~~~~e~~~~~~~~~~~~~~ 424 (733)
T COG1203 352 DET--MLAALLALLEALA---EAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAK--FCPKEDEPGLKRKERVDVEDG 424 (733)
T ss_pred ccc--hHHHHHHHHHHHH---hCCCCEEEEecCCCHHHHHHHHHHHhcccceecccc--ccccccccccccccchhhhhh
Confidence 663 3333333333332 3478999999999874 244444444332111100 000000000000000000000
Q ss_pred HHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccc
Q 000129 1556 MQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHG 1635 (2114)
Q Consensus 1556 ~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~g 1635 (2114)
.. ......+...+..+++++|.|||...|..++..|.... . .
T Consensus 425 ~~---~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~----------------------------------~-~ 466 (733)
T COG1203 425 PQ---EELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKG----------------------------------P-K 466 (733)
T ss_pred hh---HhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcC----------------------------------C-C
Confidence 00 11223333445778999999999999999997774321 1 4
Q ss_pred eEeecCCCCHHHHHHHHHHHh----cCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccC
Q 000129 1636 VGYLHEGLNKTDQEVVSALFE----AGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHAS 1711 (2114)
Q Consensus 1636 V~~~H~~ls~~dR~~v~~~F~----~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAG 1711 (2114)
+..+||.+...+|...++.+. .+...|+|||++.+.|||+....+|- .+.|+.+++||+||++
T Consensus 467 v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDidfd~mIT-------------e~aPidSLIQR~GRv~ 533 (733)
T COG1203 467 VLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDIDFDVLIT-------------ELAPIDSLIQRAGRVN 533 (733)
T ss_pred EEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccccCeeee-------------cCCCHHHHHHHHHHHh
Confidence 899999999999998888654 56789999999999999999555443 5668999999999999
Q ss_pred CCCCCCceEEEEEeecCcH
Q 000129 1712 RPLLDNSGKCVILCHAPRK 1730 (2114)
Q Consensus 1712 R~~~~~~G~~iil~~~~~~ 1730 (2114)
|.|....|.++++......
T Consensus 534 R~g~~~~~~~~v~~~~~~~ 552 (733)
T COG1203 534 RHGKKENGKIYVYNDEERG 552 (733)
T ss_pred hcccccCCceeEeecccCC
Confidence 9875578888888776543
No 221
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=2.6e-17 Score=215.06 Aligned_cols=126 Identities=17% Similarity=0.130 Sum_probs=97.5
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHH-HHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTIL-QQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il-~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~ 573 (2114)
.++++|--.--. ++.+ -|..++||+|||++|.+|++ +.+ .+ ..+-+++|+..||.|.++.+..+
T Consensus 81 ~~~dvQlig~l~-L~~G--~Iaem~TGeGKTLva~lpa~l~aL-~G-----------~~V~IvTpn~yLA~rd~e~~~~l 145 (830)
T PRK12904 81 RHFDVQLIGGMV-LHEG--KIAEMKTGEGKTLVATLPAYLNAL-TG-----------KGVHVVTVNDYLAKRDAEWMGPL 145 (830)
T ss_pred CCCccHHHhhHH-hcCC--chhhhhcCCCcHHHHHHHHHHHHH-cC-----------CCEEEEecCHHHHHHHHHHHHHH
Confidence 567778766543 4433 48899999999999999996 554 22 14679999999999999999999
Q ss_pred hccCCcEEEEEeCCCccChhh-hccceEEEcCHhHH--HHHHhccC---CCcccccccEEEEeccccc
Q 000129 574 LQMYDVKVRELSGDQTLTRQQ-IEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 574 ~~~~gi~v~~l~Gd~~~~~~~-~~~~~IiV~TPek~--d~l~r~~~---~~~~l~~v~liIiDEaH~l 635 (2114)
+..+|++|+.++|+.+...+. .-.++|+++||..+ |.+..+.. .....+.+.++||||||.+
T Consensus 146 ~~~LGlsv~~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsi 213 (830)
T PRK12904 146 YEFLGLSVGVILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSI 213 (830)
T ss_pred HhhcCCeEEEEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhh
Confidence 999999999999987765432 34689999999997 55544331 1134577899999999976
No 222
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.77 E-value=1.4e-16 Score=206.98 Aligned_cols=133 Identities=17% Similarity=0.193 Sum_probs=108.7
Q ss_pred CCCCC---CHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHH
Q 000129 492 GMTQL---NRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVG 568 (2114)
Q Consensus 492 g~~~l---~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~ 568 (2114)
||..| +|+|.++++.++.+.+ +++.|+||+|||++|.+|++..+..+. .+++|+|++.||.|.++
T Consensus 86 G~~~p~~~tp~qvQ~I~~i~l~~g-vIAeaqTGeGKTLAf~LP~l~~aL~g~-----------~v~IVTpTrELA~Qdae 153 (970)
T PRK12899 86 GYHQQWDMVPYDVQILGAIAMHKG-FITEMQTGEGKTLTAVMPLYLNALTGK-----------PVHLVTVNDYLAQRDCE 153 (970)
T ss_pred cccCCCCCChHHHHHhhhhhcCCC-eEEEeCCCCChHHHHHHHHHHHHhhcC-----------CeEEEeCCHHHHHHHHH
Confidence 67666 9999999998887755 999999999999999999998775431 37889999999999999
Q ss_pred HHHHhhccCCcEEEEEeCCCccChhh-hccceEEEcCHhHH--HHHHhccCCCc----ccccccEEEEecccccc
Q 000129 569 NLSNRLQMYDVKVRELSGDQTLTRQQ-IEETQIIVTTPEKW--DIITRKSGDRT----YTQLVKLLIIDEIHLLH 636 (2114)
Q Consensus 569 ~~~~~~~~~gi~v~~l~Gd~~~~~~~-~~~~~IiV~TPek~--d~l~r~~~~~~----~l~~v~liIiDEaH~l~ 636 (2114)
.+..+.+.+|++|+.+.|+.+...+. .-.++|+|+||+++ |.+.++..... ..+.+.++||||||.++
T Consensus 154 ~m~~L~k~lGLsV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 154 WVGSVLRWLGLTTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred HHHHHHhhcCCeEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhh
Confidence 99999988999999999998876543 33689999999998 66655432211 22456899999999763
No 223
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.75 E-value=5e-17 Score=211.64 Aligned_cols=331 Identities=15% Similarity=0.116 Sum_probs=203.0
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.++++|--.--.+ +.++ |....||+|||+++.+|++-.... +. .+-+++|+.-||.+-+..+...|. .+|+
T Consensus 80 ~~~dvQlig~l~l-~~G~--iaEm~TGEGKTLvA~l~a~l~al~---G~--~v~vvT~neyLA~Rd~e~~~~~~~-~LGl 150 (796)
T PRK12906 80 RPFDVQIIGGIVL-HEGN--IAEMKTGEGKTLTATLPVYLNALT---GK--GVHVVTVNEYLSSRDATEMGELYR-WLGL 150 (796)
T ss_pred CCchhHHHHHHHH-hcCC--cccccCCCCCcHHHHHHHHHHHHc---CC--CeEEEeccHHHHHhhHHHHHHHHH-hcCC
Confidence 5666666554444 3233 889999999999999999877766 44 788999999999999998886555 4699
Q ss_pred EEEEEcCCcccc-hhhccCCcEEEEChhhHH-HHHhhh----cccccccceeEEEeccccccc-C-CC------Cc--hH
Q 000129 1421 RVVELTGETAMD-LKLLEKGQIIISTPEKWD-ALSRRW----KQRKYVQQVSLFIIDELHLIG-G-QG------GP--VL 1484 (2114)
Q Consensus 1421 ~v~~l~G~~~~~-~~~l~~~~IIV~TPe~l~-~l~r~~----~~~~~l~~v~liIiDEaH~l~-~-~~------g~--~l 1484 (2114)
+|+.++|+.+.. .+..-.++|+++|...+- ..+|.. ..........+.||||+|.++ + .+ |+ ..
T Consensus 151 ~vg~i~~~~~~~~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~~~~ 230 (796)
T PRK12906 151 TVGLNLNSMSPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKA 230 (796)
T ss_pred eEEEeCCCCCHHHHHHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCCCCcc
Confidence 999999987654 344557799999998763 233321 111234567899999999543 1 11 11 11
Q ss_pred HHHHHHHHHHHhhcCC-------------------CceEEEEcc----------cCCC---hh--HHHHHhcC-------
Q 000129 1485 EVIVSRMRYIASQVEN-------------------KIRIVALST----------SLAN---AK--DLGEWIGA------- 1523 (2114)
Q Consensus 1485 e~i~srl~~i~~~~~~-------------------~~riV~lSA----------Tl~n---~~--dla~wl~~------- 1523 (2114)
..+...+..+..++.. ..+.|.++. .++| .. .+..|+..
T Consensus 231 ~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~l 310 (796)
T PRK12906 231 TDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRANYI 310 (796)
T ss_pred hHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHHHHH
Confidence 1122222222221111 122222221 0111 11 12233211
Q ss_pred ---CCCce------eecC-CCCCc-------------------cCcE------------------EEEecccccch----
Q 000129 1524 ---TSHGL------FNFP-PGVRP-------------------VPLE------------------IHIQGVDITNF---- 1552 (2114)
Q Consensus 1524 ---~~~~~------~~f~-~~~rp-------------------v~l~------------------~~~~~~~~~~~---- 1552 (2114)
....+ ..+. ...|. +++. ..+.|......
T Consensus 311 ~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e~~ 390 (796)
T PRK12906 311 MLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEE 390 (796)
T ss_pred HhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHHHHH
Confidence 00000 0000 00000 0000 00111111000
Q ss_pred ------------------------HHHHH----hcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcc
Q 000129 1553 ------------------------EARMQ----AMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQ 1604 (2114)
Q Consensus 1553 ------------------------~~~~~----~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~ 1604 (2114)
..... .-.+.+...+......+.|+||||+|+..++.++..|...
T Consensus 391 Ef~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~------- 463 (796)
T PRK12906 391 EFREIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEA------- 463 (796)
T ss_pred HHHHHhCCCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHC-------
Confidence 00000 0011222333333357899999999999999998777431
Q ss_pred cccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCC---CcE--
Q 000129 1605 KSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLT---AHL-- 1679 (2114)
Q Consensus 1605 ~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip---~~~-- 1679 (2114)
+.....+||++...++..+.+.++.|. |+|||++++||.|++ ++.
T Consensus 464 ----------------------------gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~ 513 (796)
T PRK12906 464 ----------------------------GIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKEL 513 (796)
T ss_pred ----------------------------CCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhh
Confidence 234678999999999999988888887 999999999999995 777
Q ss_pred ---EEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCc
Q 000129 1680 ---VVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1680 ---vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~ 1729 (2114)
+|| +++.|.+...+.|+.|||||. |.+|.+..+++-.+
T Consensus 514 GGLhVI----------~te~pes~ri~~Ql~GRtGRq--G~~G~s~~~~sleD 554 (796)
T PRK12906 514 GGLAVI----------GTERHESRRIDNQLRGRSGRQ--GDPGSSRFYLSLED 554 (796)
T ss_pred CCcEEE----------eeecCCcHHHHHHHhhhhccC--CCCcceEEEEeccc
Confidence 898 788899999999999999998 78999998888764
No 224
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.75 E-value=1.1e-16 Score=209.32 Aligned_cols=126 Identities=17% Similarity=0.097 Sum_probs=93.3
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHH-HHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAIL-RNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il-~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g 1419 (2114)
.++++|--.--.+ +.+ -|..++||+|||++|.+|++ +.+ . +. .+-+++|+..||.|.++.+.. +.+.+|
T Consensus 81 ~~~dvQlig~l~L-~~G--~Iaem~TGeGKTLva~lpa~l~aL-~---G~--~V~IvTpn~yLA~rd~e~~~~-l~~~LG 150 (830)
T PRK12904 81 RHFDVQLIGGMVL-HEG--KIAEMKTGEGKTLVATLPAYLNAL-T---GK--GVHVVTVNDYLAKRDAEWMGP-LYEFLG 150 (830)
T ss_pred CCCccHHHhhHHh-cCC--chhhhhcCCCcHHHHHHHHHHHHH-c---CC--CEEEEecCHHHHHHHHHHHHH-HHhhcC
Confidence 4556665444333 323 48899999999999999996 444 3 22 466999999999999998884 556679
Q ss_pred cEEEEEcCCcccchh-hccCCcEEEEChhhH-HHHHhhhccc----ccccceeEEEecccccc
Q 000129 1420 MRVVELTGETAMDLK-LLEKGQIIISTPEKW-DALSRRWKQR----KYVQQVSLFIIDELHLI 1476 (2114)
Q Consensus 1420 ~~v~~l~G~~~~~~~-~l~~~~IIV~TPe~l-~~l~r~~~~~----~~l~~v~liIiDEaH~l 1476 (2114)
++|+.++|+.+...+ ..-.++|+++||..+ ..++|..... ...+.+.++||||||.+
T Consensus 151 lsv~~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsi 213 (830)
T PRK12904 151 LSVGVILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSI 213 (830)
T ss_pred CeEEEEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhh
Confidence 999999998776532 333579999999998 6677653211 23567899999999955
No 225
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.75 E-value=1e-16 Score=208.50 Aligned_cols=128 Identities=16% Similarity=0.111 Sum_probs=98.2
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.++++|--.-- +++.+ -|..++||.|||++|.+|++.....+. .+.+|+|+..||.+..+.+..++
T Consensus 82 ~~ydVQliGgl-~L~~G--~IaEm~TGEGKTL~a~lp~~l~al~g~-----------~VhIvT~ndyLA~RD~e~m~~l~ 147 (908)
T PRK13107 82 RHFDVQLLGGM-VLDSN--RIAEMRTGEGKTLTATLPAYLNALTGK-----------GVHVITVNDYLARRDAENNRPLF 147 (908)
T ss_pred CcCchHHhcch-HhcCC--ccccccCCCCchHHHHHHHHHHHhcCC-----------CEEEEeCCHHHHHHHHHHHHHHH
Confidence 45566654433 23333 588999999999999999987765542 49999999999999999999999
Q ss_pred ccCCcEEEEEeCCCccChhhh-ccceEEEcCHhHH--HHHHhccC---CCcccccccEEEEecccccc
Q 000129 575 QMYDVKVRELSGDQTLTRQQI-EETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLLH 636 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~~-~~~~IiV~TPek~--d~l~r~~~---~~~~l~~v~liIiDEaH~l~ 636 (2114)
..+|++|+.++|+.+...+.. -.++|+++||..+ |.|..+.. .......+.++||||||.++
T Consensus 148 ~~lGlsv~~i~~~~~~~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiL 215 (908)
T PRK13107 148 EFLGLTVGINVAGLGQQEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSIL 215 (908)
T ss_pred HhcCCeEEEecCCCCHHHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhc
Confidence 999999999999877644433 3789999999996 66555421 12234678999999999764
No 226
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=8e-16 Score=200.16 Aligned_cols=133 Identities=16% Similarity=0.179 Sum_probs=106.7
Q ss_pred CCCCC---CHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHh
Q 000129 1338 GFKHF---NPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKF 1414 (2114)
Q Consensus 1338 gf~~~---~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f 1414 (2114)
||..| +|+|.|+++.+..+.+ +++.++||+|||++|.+|++..+.. +. .+++|+|+++||.|.++.+. .+
T Consensus 86 G~~~p~~~tp~qvQ~I~~i~l~~g-vIAeaqTGeGKTLAf~LP~l~~aL~---g~--~v~IVTpTrELA~Qdae~m~-~L 158 (970)
T PRK12899 86 GYHQQWDMVPYDVQILGAIAMHKG-FITEMQTGEGKTLTAVMPLYLNALT---GK--PVHLVTVNDYLAQRDCEWVG-SV 158 (970)
T ss_pred cccCCCCCChHHHHHhhhhhcCCC-eEEEeCCCCChHHHHHHHHHHHHhh---cC--CeEEEeCCHHHHHHHHHHHH-HH
Confidence 67777 9999999999988655 9999999999999999999987765 22 47899999999999998887 56
Q ss_pred cCCCCcEEEEEcCCcccchh-hccCCcEEEEChhhH-HHHHhhhcccc-----cccceeEEEeccccccc
Q 000129 1415 GQGLGMRVVELTGETAMDLK-LLEKGQIIISTPEKW-DALSRRWKQRK-----YVQQVSLFIIDELHLIG 1477 (2114)
Q Consensus 1415 ~~~~g~~v~~l~G~~~~~~~-~l~~~~IIV~TPe~l-~~l~r~~~~~~-----~l~~v~liIiDEaH~l~ 1477 (2114)
.+.+|++++.+.|+.+...+ ..-.++|+||||+++ ..+++...-.. ..+.+.++||||||.+.
T Consensus 159 ~k~lGLsV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 159 LRWLGLTTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred HhhcCCeEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhh
Confidence 67789999999998876633 223589999999999 77777621111 12356899999999653
No 227
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.71 E-value=1.1e-16 Score=185.91 Aligned_cols=280 Identities=14% Similarity=0.153 Sum_probs=220.8
Q ss_pred cccCHhHHHHHHhhcCCCCChhhHHHHHhcCccccCCCCCcchHHHHHHHHhhCCcccCCCCCCChHHHHHHHHHHHhcC
Q 000129 1797 YYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSR 1876 (2114)
Q Consensus 1797 y~i~~~T~~~f~~sl~~~~~~~~iL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~p~~~~~~~~~~~~~K~~lLLqahlsr 1876 (2114)
-.+.+.||.+|+..+....++..+|+++|.|.||..+ .| .-|-.-..-||++|++|
T Consensus 225 ~gvh~vT~~~f~~~~~~SlTlDelLslfasskElt~~----------------~p--------k~pk~~~ekll~dhlnr 280 (610)
T COG5407 225 VGVHFVTMEMFYERIDGSLTLDELLSLFASSKELTRM----------------NP--------KGPKCTLEKLLGDHLNR 280 (610)
T ss_pred cceeeeeHHHHHHhhcccchHHHHHHHHhhhHHHHHh----------------CC--------CCCchhHHHHHHHHHhH
Confidence 3567889999999998888899999999999998544 12 11223356689999998
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCC-CCccccCCCCCHHHHHHHHcCCCC
Q 000129 1877 QQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWER-DSMLLQLPHFMKDLAKRCQENPGK 1955 (2114)
Q Consensus 1877 ~~lp~~l~~D~~~il~~a~rLl~a~vdi~~~~g~l~~al~~m~L~q~i~Qg~w~~-~s~L~QLP~i~~~~~~~l~~~~~~ 1955 (2114)
-.-. .+. ..+|+.++.-|++|+.+|++..+++.++..++.+.|||+||+.-+ ..+++||||.+.+.++++.-..
T Consensus 281 ~~s~-~fn--~~ri~s~~~~ll~aLL~ia~~F~f~~~~~g~~n~~q~iVqAiPld~~f~ilQlp~~d~E~~~~~s~r~-- 355 (610)
T COG5407 281 ARSV-EFN--EYRIKSNVEGLLGALLRIASNFAFPLKECGKENKGQYIVQAIPLDHLFRILQLPRSDVEYAQRVSLRL-- 355 (610)
T ss_pred hhcc-cch--heehhhhhHHHHHHHHHHHhhccCCchhhccchhhheeeEeccCCCCchhhcccchhHHHHHHhhhhh--
Confidence 6532 222 678999999999999999999999999999999999999999866 6789999999999999888777
Q ss_pred cccCHHHHhcCCHHHHHHHhc-CChHHHHHHHHHHhcCCceEE---EEEEeccccccCCCcEEEEEEE--EEcC------
Q 000129 1956 SIETVFDLVEMEDDERRELLQ-MSDVQLLDIARFCNRFPNIDM---SFEVQDSENVRAGEDITLQVVL--ERDL------ 2023 (2114)
Q Consensus 1956 ~i~t~~dl~~~~~~~r~~ll~-~~~~~~~~i~~~~~~~P~i~v---~~~v~~~~~v~~g~~~~l~v~l--~r~~------ 2023 (2114)
|+++..|..+.+++....|+ +...++.++.++++.+|++.+ .|=|.++..|++++.--+..+. .-..
T Consensus 356 -I~~~~~~~sL~~~~~g~vl~n~~~~~l~e~~~va~gIPr~~~~~a~flv~~d~~it~~s~~~vslk~~~g~~~~pe~~t 434 (610)
T COG5407 356 -IEGMKAIGSLIAKRYGNVLKNLVVLELMEIQAVADGIPRYFLLQAPFLVFEDLFITEKSKERVSLKGYLGAIPGPEHRT 434 (610)
T ss_pred -hhhhhhHhhHHHHHHhhhhhhHHHHHHHHHHHHhcCCCceEEEecceeecccceecccceeeEEEEEEeccccCCcccc
Confidence 99999999999999988887 888999999999999999876 5667777888888776444433 1100
Q ss_pred ---------C----------------CCcccCccccCCCCCCccccEEEEEEECCCCeEEEEEEeecc----cccEEEEE
Q 000129 2024 ---------E----------------GRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQ----RKSRVKLD 2074 (2114)
Q Consensus 2024 ---------~----------------~~~~~~~v~ap~fp~~k~e~Wwlvvgd~~~~~L~~~krv~~~----~~~~~~l~ 2074 (2114)
+ +.++.+...||+||....-.||+.+.+++.+.++ |...++. ......++
T Consensus 435 s~~~~~n~~e~~dfe~~~~~~~ai~~d~~~~pys~Ap~f~t~~~~~w~~~v~~~~Qt~~I-ip~~Si~~v~K~~~d~Ri~ 513 (610)
T COG5407 435 SALNVYNQVEISDFEASVIETGAIKNDSSDSPYSEAPDFATRNDSEWAVRVAKCEQTVYI-IPGGSIATVSKVTLDRRIQ 513 (610)
T ss_pred cccccccccChHHHhhhccCccccccCCCCCCcccCcccccccCcceEEEeeccccceEE-eCCccccccchhhhhcccc
Confidence 0 0023447899999999999999999999987643 3333332 23346677
Q ss_pred EEecCCCCceEEEEEEEecCccccCeEEEEEEE
Q 000129 2075 FAAPAEAGKKTYTLYFMCDSYMGCDQEYAFTVD 2107 (2114)
Q Consensus 2075 f~~p~~~G~~~~~l~~~sDsY~G~D~~~~~~~~ 2107 (2114)
|.+|+-.|+..+.+.+++-+|+|.+.--.+..-
T Consensus 514 ~dv~pvd~T~~~ql~~~ap~~vg~f~~~~ivm~ 546 (610)
T COG5407 514 GDVAPVDKTGGKQLIVHAPFMVGAFSVKWIVML 546 (610)
T ss_pred cccCccccccceeeeecCchhhccceeeeEEEE
Confidence 777766778888899999999998876665433
No 228
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.69 E-value=4.4e-15 Score=204.81 Aligned_cols=134 Identities=18% Similarity=0.323 Sum_probs=91.0
Q ss_pred CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHH
Q 000129 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (2114)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v 812 (2114)
++++|||++|.+..+.++..|...... .++.++..+.. ..|..+
T Consensus 674 ~g~~LVlftS~~~l~~v~~~L~~~~~~-----------------------------------~~~~~l~q~~~-~~r~~l 717 (850)
T TIGR01407 674 SPKILVLFTSYEMLHMVYDMLNELPEF-----------------------------------EGYEVLAQGIN-GSRAKI 717 (850)
T ss_pred CCCEEEEeCCHHHHHHHHHHHhhhccc-----------------------------------cCceEEecCCC-ccHHHH
Confidence 578999999999999999888642110 01122223333 478889
Q ss_pred HHHHhCCCceEEEechHhhhhcCCCceEE--EEecceeccCCC----------------CccccC----CHHHHHHhhcc
Q 000129 813 EDLFGDGHVQVLVSTATLAWGVNLPAHTV--IIKGTQIYNPEK----------------GAWTEL----SPLDIMQMLGR 870 (2114)
Q Consensus 813 ~~~F~~g~i~VLVaT~tla~GVdlP~v~v--VI~~~~~yd~~~----------------g~~~~~----s~~~~~Qr~GR 870 (2114)
++.|++|...||+||+.+++|||+|+..+ ||-...||.++. ..|.++ ....+.|.+||
T Consensus 718 l~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GR 797 (850)
T TIGR01407 718 KKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGR 797 (850)
T ss_pred HHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhcc
Confidence 99999999999999999999999998653 444556776543 112333 44678999999
Q ss_pred cCCCCCCCceEEEEEcCCCcHHHHHHhhcCCCc
Q 000129 871 AGRPQYDSYGEGIIITGHSELRYYLSLMNQQLP 903 (2114)
Q Consensus 871 AGR~g~d~~G~~iil~~~~e~~~~~~ll~~~~p 903 (2114)
.-|... ..|..+++-..-....|-+.+-..+|
T Consensus 798 lIRs~~-D~G~v~ilD~R~~~~~Yg~~~~~sLp 829 (850)
T TIGR01407 798 LIRREN-DRGSIVILDRRLVGKRYGKRFEKSLP 829 (850)
T ss_pred ccccCC-ceEEEEEEccccccchHHHHHHHhCC
Confidence 999754 46766666444333455554444455
No 229
>KOG4434 consensus Molecular chaperone SEC63, endoplasmic reticulum translocon component [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.3e-15 Score=172.26 Aligned_cols=279 Identities=24% Similarity=0.383 Sum_probs=213.7
Q ss_pred CCCCCHHHHHHHhhCCccC-----CCCcCChhHHHHHHHHhccCCC---CCCCC-CC-ChhHHHHHHHHHHHhcccCCCC
Q 000129 1021 KPTMGDIELCRLFSLSEEF-----KYVTVRQDEKMELAKLLDRVPI---PVKES-LE-EPSAKINVLLQAYISQLKLEGL 1090 (2114)
Q Consensus 1021 ~~~~~~~~~l~i~s~s~ef-----~~i~~r~~e~~~l~~l~~~~~~---~~~~~-~~-~~~~K~~~llq~~i~~~~~~~~ 1090 (2114)
.+.|...-++.+||.|.|| +++.-|+.+.-+.-.|+..++- .-++. .. .-+.|..+||.||+||++++.=
T Consensus 8 Tp~M~~kR~imVLags~EFdkqyNk~iqeR~tDn~evP~Lirqi~~vN~K~kE~PL~~pYslKaRvlLhahLsRmpl~~d 87 (520)
T KOG4434|consen 8 TPRMEIKRMIMVLAGSFEFDKQYNKEIQERETDNYEVPRLIRQIAGVNDKGKEQPLSQPYSLKARVLLHAHLSRMPLESD 87 (520)
T ss_pred CchhHHHHHHHHHhcccccChhhchhhhccCCcchHHHHHHHHcccccccccCCCccCchhHHHHHHHHHHHhcCCCChh
Confidence 3556667788999999999 5677888888888888766542 11111 11 3367999999999999999977
Q ss_pred cccchHHHHHHhHHHHHHHHHHHHH-------Hc---C--cHHHHHHHHHHHHHHHccccCCCCccccCCCCCHHHHHHH
Q 000129 1091 SLTSDMVFITQSAGRLLRALFEIVL-------KR---G--WAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKL 1158 (2114)
Q Consensus 1091 ~l~~d~~~i~~~a~rl~~a~~ei~~-------~~---~--~~~~~~~~~~l~~~~~~~~w~~~~~l~q~~~~~~~~~~~l 1158 (2114)
.|.-|..||+....|++.-|+..+- .+ . -.....++|.|+.|+.|++|...|||.|+|||.+.-++.+
T Consensus 88 tLEeDqqfiikkcp~lvqEMVnc~~qLi~May~r~~~r~psiet~eNcmKlspM~vQgLwqfkSPLLQLPHitednL~~~ 167 (520)
T KOG4434|consen 88 TLEEDQQFIIKKCPRLVQEMVNCSQQLIVMAYSRHTRRIPSIETFENCMKLSPMFVQGLWQFKSPLLQLPHITEDNLQHL 167 (520)
T ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccccCccHHHHHHHHhccHHHHHHHHHhcChhhcCCccchHHHHHH
Confidence 8999999999999999988876432 11 1 1245678999999999999999999999999999999999
Q ss_pred HhCC-C-chhhhccCChHHhhhhhcC-chhH-HHHHHHHhcCCceeEEEEEeecc---------CceEEEEEEEccC---
Q 000129 1159 EKKD-F-AWERYYDLSPQELGELIRF-PKMG-RTLHKFVHQFPKLILAAHVQPIT---------RTVLKVELTITPD--- 1222 (2114)
Q Consensus 1159 ~~~~-~-~~~~~~~~~~~~~~~~~~~-~~~~-~~i~~~~~~~P~~~~~~~~~~~~---------~~~l~~~l~i~~~--- 1222 (2114)
.++- + +..++.-|.+++...||++ .... ..+...+..||.+.++...+-+. +.+++|.|++++.
T Consensus 168 ~KKr~vks~qdla~lk~e~rr~lL~~LsdeeYe~vM~VLg~mP~~~~~ik~~V~dded~n~~TaG~vVTv~Vtl~R~~l~ 247 (520)
T KOG4434|consen 168 RKKRKVKSCQDLAVLKAETRRSLLRSLSDEEYEDVMVVLGMMPRLQIEIKTVVEDDEDKNELTAGCVVTVKVTLRRSRLI 247 (520)
T ss_pred hhhcccccHHHHhhcCHHHHHHHHHhcchHHHHHHHHHHccCcceEEEeeEEEecCCcccceeeeeEEEEEEEEEecccc
Confidence 7654 3 6778888899999999874 4444 78889999999999987776442 5667777777431
Q ss_pred --------------------------------------------------------------------------------
Q 000129 1223 -------------------------------------------------------------------------------- 1222 (2114)
Q Consensus 1223 -------------------------------------------------------------------------------- 1222 (2114)
T Consensus 248 d~~e~~~~d~~k~paedG~~de~n~ea~g~~~eaaa~~~~~~vKK~kpw~K~Kpk~~kkpaq~Q~~qK~v~~~aas~at~ 327 (520)
T KOG4434|consen 248 DPQEAGLADQYKKPAEDGGDDENNLEASGAPEEAAATVEEEEVKKRKPWEKNKPKQKKKPAQGQGQQKFVKKNAASPATE 327 (520)
T ss_pred ChHhhhhhhhhhCchhhCCCcccchhccCChhhhccccchhhhhhcCchhhcCCCcccCccccchhhhhcccccCChhhh
Confidence
Q ss_pred ------------------------------------------------CccCC-------------------CCCCcccc
Q 000129 1223 ------------------------------------------------FLWDD-------------------KVHGYVEP 1235 (2114)
Q Consensus 1223 ------------------------------------------------f~~~~-------------------~~~~~~~~ 1235 (2114)
-.|.+ .||++++|
T Consensus 328 ka~eeea~~~~sD~E~e~~n~Ds~dees~asd~~~D~e~~~~~ddddd~EWe~lqa~~~kr~~lEtKs~~tHtVh~pyFP 407 (520)
T KOG4434|consen 328 KALEEEAKDKGSDSEEEETNRDSQDEESDASDRDSDREQDEKQDDDDDAEWEELQASIQKRALLETKSKITHTVHSPYFP 407 (520)
T ss_pred hhhHHHhhhcCcchhhhhhcccccccccccCccccchhhccccccccHHHHHHHHHHHHHHHhhhcccccceeeccCCCc
Confidence 00211 08888877
Q ss_pred ------EEEEEEeCCCCeEEEEEeeeeeecccccccEEEEEeccCCCCCCeEEEEEeccccccCcccccccc
Q 000129 1236 ------FWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSF 1301 (2114)
Q Consensus 1236 ------~wi~v~d~~~~~i~~~~~~~l~~~~~~~~~~~~f~vp~~~p~p~~y~v~~vSD~wl~~e~~~~is~ 1301 (2114)
||+.|.|..+..+|...+...+=+ -.++..+.|+.| ..|+-+.|.|.+-||+|+|.+...|+-+
T Consensus 408 eEKqEwWW~Yi~drKsrtLlt~PyhV~tL~-d~eei~lkF~AP-~~pG~Ytytv~lrSDSYmg~dq~~~lKl 477 (520)
T KOG4434|consen 408 EEKQEWWWLYIADRKSRTLLTMPYHVCTLK-DTEEIELKFPAP-GKPGNYTYTVFLRSDSYMGLDQIKPLKL 477 (520)
T ss_pred chhhheeeeeeecccccceecchhhhhccc-ccceeEEeccCC-CCCCceEEEEEEecccccChhhccceee
Confidence 999999998888876666432211 146778899988 5788899999999999999998777654
No 230
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.68 E-value=1.5e-15 Score=197.71 Aligned_cols=112 Identities=18% Similarity=0.117 Sum_probs=86.9
Q ss_pred EEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhhcc-C
Q 000129 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLE-K 1438 (2114)
Q Consensus 1360 vli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~l~-~ 1438 (2114)
-|..++||.|||++|.+|++..... +. .+.+|+|+..||.+-++.+.. +-..+|++|++++|+.+...+.-. .
T Consensus 98 ~IaEm~TGEGKTL~a~lp~~l~al~---g~--~VhIvT~ndyLA~RD~e~m~~-l~~~lGlsv~~i~~~~~~~~r~~~Y~ 171 (908)
T PRK13107 98 RIAEMRTGEGKTLTATLPAYLNALT---GK--GVHVITVNDYLARRDAENNRP-LFEFLGLTVGINVAGLGQQEKKAAYN 171 (908)
T ss_pred ccccccCCCCchHHHHHHHHHHHhc---CC--CEEEEeCCHHHHHHHHHHHHH-HHHhcCCeEEEecCCCCHHHHHhcCC
Confidence 5889999999999999999876655 33 589999999999999887774 555679999999998776543332 6
Q ss_pred CcEEEEChhhH-HHHHhhh-ccc---ccccceeEEEeccccccc
Q 000129 1439 GQIIISTPEKW-DALSRRW-KQR---KYVQQVSLFIIDELHLIG 1477 (2114)
Q Consensus 1439 ~~IIV~TPe~l-~~l~r~~-~~~---~~l~~v~liIiDEaH~l~ 1477 (2114)
++|+++||+.+ ..++|.. ... ...+.+.++||||||.++
T Consensus 172 ~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiL 215 (908)
T PRK13107 172 ADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSIL 215 (908)
T ss_pred CCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhc
Confidence 79999999997 5566653 111 123678999999999654
No 231
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.68 E-value=2.9e-15 Score=200.21 Aligned_cols=359 Identities=14% Similarity=0.108 Sum_probs=187.9
Q ss_pred CCCHHHHHHHHHHHc---------CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHH
Q 000129 1341 HFNPIQTQVFTVLYN---------TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~---------~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~ 1411 (2114)
.+++.|..|+..+++ +.++.+|+.|||||||+++...+...+.. ... .++|+|+|+++|..|+.+.|.
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~-~~~--~~vl~lvdR~~L~~Q~~~~f~ 314 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL-LKN--PKVFFVVDRRELDYQLMKEFQ 314 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh-cCC--CeEEEEECcHHHHHHHHHHHH
Confidence 367889999888643 24579999999999999987766555433 223 399999999999999999998
Q ss_pred HHhcCCCCcEEEEEcCCcccch-hhcc--CCcEEEEChhhHHHHHhhhcccccccc-eeEEEecccccccCCCCchHHHH
Q 000129 1412 IKFGQGLGMRVVELTGETAMDL-KLLE--KGQIIISTPEKWDALSRRWKQRKYVQQ-VSLFIIDELHLIGGQGGPVLEVI 1487 (2114)
Q Consensus 1412 ~~f~~~~g~~v~~l~G~~~~~~-~~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~-v~liIiDEaH~l~~~~g~~le~i 1487 (2114)
. ++.. .+. ..+. ..++ ..+. .+.|+|+|.+++...+..+........ --+||+||||+..... +
T Consensus 315 ~-~~~~---~~~-~~~s-~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~------~ 382 (667)
T TIGR00348 315 S-LQKD---CAE-RIES-IAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGE------L 382 (667)
T ss_pred h-hCCC---CCc-ccCC-HHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchH------H
Confidence 4 4421 010 0111 1111 1222 358999999998764433211111111 1289999999764221 3
Q ss_pred HHHHHHHHhhcCCCceEEEEcccCCChhH--HHHHhcCCC-Cceeec--CCC---CCccCcEEEEec----ccccc----
Q 000129 1488 VSRMRYIASQVENKIRIVALSTSLANAKD--LGEWIGATS-HGLFNF--PPG---VRPVPLEIHIQG----VDITN---- 1551 (2114)
Q Consensus 1488 ~srl~~i~~~~~~~~riV~lSATl~n~~d--la~wl~~~~-~~~~~f--~~~---~rpv~l~~~~~~----~~~~~---- 1551 (2114)
...|+.. -++..++|||||+-...+ -...+|... ..++.+ ... .-.+|+...... .....
T Consensus 383 ~~~l~~~----~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~ 458 (667)
T TIGR00348 383 AKNLKKA----LKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAF 458 (667)
T ss_pred HHHHHhh----CCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHH
Confidence 3333322 245789999999854211 112222110 011111 000 011111111000 00000
Q ss_pred hHHHH-------------------Hh-----c----CHHHHHHHHHHh----c-CCCCEEEEeCChHHHHHHHHHHHHhh
Q 000129 1552 FEARM-------------------QA-----M----TKPTFTAIVQHA----K-NEKPALVFVPSRKYVRLTAVDLMTYS 1598 (2114)
Q Consensus 1552 ~~~~~-------------------~~-----~----~~~~~~~i~~~l----~-~~~~~LVFv~sr~~a~~la~~L~~~~ 1598 (2114)
+.... .. . .......+..+. . .+++++|||.++..|..++..|..+.
T Consensus 459 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~ 538 (667)
T TIGR00348 459 FDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEEL 538 (667)
T ss_pred HHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhc
Confidence 00000 00 0 011112222222 1 24789999999999999998886654
Q ss_pred ccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCC-CHHHHHHHHHHHhc-CCceEEEecCccccccCCC
Q 000129 1599 SMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGL-NKTDQEVVSALFEA-GKIKVCVMSSSMCWGVPLT 1676 (2114)
Q Consensus 1599 ~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~l-s~~dR~~v~~~F~~-g~i~VLVaT~~la~Gvdip 1676 (2114)
.............+... .... ......+... ++.- .......+.+.|++ +.++|||+++.+..|+|.|
T Consensus 539 ~~~~~~~~vv~s~~~~~-~~~~-----~~~~~~~~~~----~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP 608 (667)
T TIGR00348 539 NEKFEASAIVMTGKESD-DAEI-----RDYNKHIRTK----FDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAP 608 (667)
T ss_pred ccccCCeeEEecCCccc-hhHH-----HHHHHHhccc----cccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCC
Confidence 32210000011111000 0000 0011111110 0000 01234568888976 6899999999999999999
Q ss_pred CcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHHHHHHh
Q 000129 1677 AHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLRL 1739 (2114)
Q Consensus 1677 ~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~~~lRl 1739 (2114)
.+.+++. +.|..-..++|++||+.|.-...+-.++|+..-...+.+++.+.+
T Consensus 609 ~l~tLyl-----------dKplk~h~LlQai~R~nR~~~~~K~~g~IvDy~g~~~~l~~Al~~ 660 (667)
T TIGR00348 609 ILNTLYL-----------DKPLKYHGLLQAIARTNRIDGKDKTFGLIVDYRGLEKSLIDALSL 660 (667)
T ss_pred ccceEEE-----------eccccccHHHHHHHHhccccCCCCCCEEEEECcChHHHHHHHHHH
Confidence 9888872 344444568999999999522222224444444444555554433
No 232
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.68 E-value=6.2e-16 Score=183.42 Aligned_cols=381 Identities=10% Similarity=-0.004 Sum_probs=242.5
Q ss_pred hHHHHHhcC--CCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHH
Q 000129 1330 PLYEALYQG--FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (2114)
Q Consensus 1330 ~~~~~l~~g--f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~ 1407 (2114)
+....+|.+ -..+..+|.++++.+-+ ++|+++.-.|.+||.+|+.++....+... +.. ..+|+.|++++++...
T Consensus 273 E~~~~~~~~~~~E~~~~~~~~~~~~~~~-G~~~~~~~~~~~GK~~~~~~~s~~~~~~~-~~s--~~~~~~~~~~~~~~~~ 348 (1034)
T KOG4150|consen 273 ESIRSLLNKNTGESGIAISLELLKFASE-GRADGGNEARQAGKGTCPTSGSRKFQTLC-HAT--NSLLPSEMVEHLRNGS 348 (1034)
T ss_pred HHHHHHHhcccccchhhhhHHHHhhhhh-cccccccchhhcCCccCcccchhhhhhcC-ccc--ceecchhHHHHhhccC
Confidence 455667775 45789999999998865 66699999999999999999988777663 333 6799999999988754
Q ss_pred HHHHHHhcCCC---CcEEEEEcCCcccchhhc--cCCcEEEEChhhHHH-HH-hhhcccccccceeEEEecccccccCCC
Q 000129 1408 RDWEIKFGQGL---GMRVVELTGETAMDLKLL--EKGQIIISTPEKWDA-LS-RRWKQRKYVQQVSLFIIDELHLIGGQG 1480 (2114)
Q Consensus 1408 ~~~~~~f~~~~---g~~v~~l~G~~~~~~~~l--~~~~IIV~TPe~l~~-l~-r~~~~~~~l~~v~liIiDEaH~l~~~~ 1480 (2114)
+-+.-.+.... .--|-...|++....+.+ .+.+++++.|..... .+ .....+..+-...++++||+|.+....
T Consensus 349 ~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~ 428 (1034)
T KOG4150|consen 349 KGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPT 428 (1034)
T ss_pred CceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecch
Confidence 43221111110 111222334443333322 244899999987643 22 221223345567889999999988777
Q ss_pred CchHHHHHHHHHHHHhhc--CCCceEEEEcccCCChh-HHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHH
Q 000129 1481 GPVLEVIVSRMRYIASQV--ENKIRIVALSTSLANAK-DLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQ 1557 (2114)
Q Consensus 1481 g~~le~i~srl~~i~~~~--~~~~riV~lSATl~n~~-dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~ 1557 (2114)
|......+.++..+..-+ ..+.+++-.|||+-+.. ...+.+|.....++....+-....+-+...+-..+.....-.
T Consensus 429 ~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~ 508 (1034)
T KOG4150|consen 429 KALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKS 508 (1034)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhh
Confidence 766666666665554432 35789999999997754 444555655444443332221111111111111111111111
Q ss_pred hcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceE
Q 000129 1558 AMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637 (2114)
Q Consensus 1558 ~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~ 1637 (2114)
......-..+.+.+..+-++|.||++|+-|+.+-......+... -. .+-..|.
T Consensus 509 ~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET--------------------------~~-~LV~~i~ 561 (1034)
T KOG4150|consen 509 SKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAET--------------------------AP-HLVEAIT 561 (1034)
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHh--------------------------hH-HHHHHHH
Confidence 11122223333444668899999999999987764433221100 00 1112355
Q ss_pred eecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCC
Q 000129 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDN 1717 (2114)
Q Consensus 1638 ~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~ 1717 (2114)
.+.||-+.+||+.++...-.|++.-+|||+.++-|+|+.....|+ +...|+|++.+.|..|||||.. .
T Consensus 562 SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl----------~~GFP~S~aNl~QQ~GRAGRRN--k 629 (1034)
T KOG4150|consen 562 SYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVL----------HLGFPGSIANLWQQAGRAGRRN--K 629 (1034)
T ss_pred hhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEE----------EccCchhHHHHHHHhccccccC--C
Confidence 678999999999999999999999999999999999999999999 7889999999999999999984 4
Q ss_pred ceEEEEE--eecCcHHHHHHHHHhccCCCCccccCCCc
Q 000129 1718 SGKCVIL--CHAPRKEYYKKFLRLTQNPNYYNLQGVSH 1753 (2114)
Q Consensus 1718 ~G~~iil--~~~~~~~~~~~~lRl~~nP~~y~l~~~s~ 1753 (2114)
+..++.+ ..+-+..|++.-..++..|++--..+...
T Consensus 630 ~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~EL~LD~~N 667 (1034)
T KOG4150|consen 630 PSLAVYVAFLGPVDQYYMSHPDKLFGSPNEELHLDSQN 667 (1034)
T ss_pred CceEEEEEeccchhhHhhcCcHHHhCCCcceeEEeccc
Confidence 4444444 33444455555557778887764444333
No 233
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.67 E-value=1.5e-14 Score=199.49 Aligned_cols=201 Identities=16% Similarity=0.203 Sum_probs=115.8
Q ss_pred ceEEEEcccCC---ChhHHHHHhcCCCCceeec-CCCCC-ccCcEEEEec-ccccch--HHHHHhcCHHHHHHHHHHh-c
Q 000129 1502 IRIVALSTSLA---NAKDLGEWIGATSHGLFNF-PPGVR-PVPLEIHIQG-VDITNF--EARMQAMTKPTFTAIVQHA-K 1572 (2114)
Q Consensus 1502 ~riV~lSATl~---n~~dla~wl~~~~~~~~~f-~~~~r-pv~l~~~~~~-~~~~~~--~~~~~~~~~~~~~~i~~~l-~ 1572 (2114)
..+|++|||+. +..-+.+.+|........+ ++.+. .-...+.+.. .+.... ..... ......+...+ .
T Consensus 596 ~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~---~~ia~~i~~l~~~ 672 (850)
T TIGR01407 596 KSLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYA---QEIASYIIEITAI 672 (850)
T ss_pred CeEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHH---HHHHHHHHHHHHh
Confidence 46899999997 4556778888764332222 11111 1112222211 111110 11111 11122222211 2
Q ss_pred CCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHH
Q 000129 1573 NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVS 1652 (2114)
Q Consensus 1573 ~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~ 1652 (2114)
..+++|||++|.+..+.++..|..... ..++..+..+.. ..|..++
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~---------------------------------~~~~~~l~q~~~-~~r~~ll 718 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPE---------------------------------FEGYEVLAQGIN-GSRAKIK 718 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhcc---------------------------------ccCceEEecCCC-ccHHHHH
Confidence 457899999999999888876632110 112333444444 5788999
Q ss_pred HHHhcCCceEEEecCccccccCCCCcE---EEEEeeeEecCC----------------c---CcCCCCCHhHHHHhHccc
Q 000129 1653 ALFEAGKIKVCVMSSSMCWGVPLTAHL---VVVMGTQYYDGQ----------------E---NAHTDYPVTDLLQMMGHA 1710 (2114)
Q Consensus 1653 ~~F~~g~i~VLVaT~~la~Gvdip~~~---vVI~gt~~yd~~----------------~---~~~~~~s~~~~lQr~GRA 1710 (2114)
+.|++|+..||+||+.+.+|||+|+.. +||.|.++-.+. . .+..|..+..+.|.+||.
T Consensus 719 ~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRl 798 (850)
T TIGR01407 719 KRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRL 798 (850)
T ss_pred HHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccc
Confidence 999999999999999999999999754 445555543221 1 112233457788999999
Q ss_pred CCCCCCCceEEEEEeecCcHHHH-HHHHHhc
Q 000129 1711 SRPLLDNSGKCVILCHAPRKEYY-KKFLRLT 1740 (2114)
Q Consensus 1711 GR~~~~~~G~~iil~~~~~~~~~-~~~lRl~ 1740 (2114)
-|.. +..|.++++-..-....| +.|++.+
T Consensus 799 IRs~-~D~G~v~ilD~R~~~~~Yg~~~~~sL 828 (850)
T TIGR01407 799 IRRE-NDRGSIVILDRRLVGKRYGKRFEKSL 828 (850)
T ss_pred cccC-CceEEEEEEccccccchHHHHHHHhC
Confidence 9974 567766666444333344 5555444
No 234
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.65 E-value=1.3e-14 Score=194.18 Aligned_cols=344 Identities=16% Similarity=0.156 Sum_probs=175.8
Q ss_pred CCHHHHHHHHHHHcC---------CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000129 496 LNRVQSRVYKSALSS---------ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (2114)
Q Consensus 496 l~~iQ~~~i~~~l~~---------~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~ 566 (2114)
+++.|..|+..++.. .++.+++.|||||||+++...+...+... ...++|+|+|+++|..|+
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~---------~~~~vl~lvdR~~L~~Q~ 309 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELL---------KNPKVFFVVDRRELDYQL 309 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhc---------CCCeEEEEECcHHHHHHH
Confidence 577888888776432 35799999999999999877765544222 245899999999999999
Q ss_pred HHHHHHhhccCCcEEEEEeCCC-ccChhh-hccceEEEcCHhHHHHHHhccCCCcccccc-cEEEEecccccccCCchhH
Q 000129 567 VGNLSNRLQMYDVKVRELSGDQ-TLTRQQ-IEETQIIVTTPEKWDIITRKSGDRTYTQLV-KLLIIDEIHLLHDNRGPVL 643 (2114)
Q Consensus 567 ~~~~~~~~~~~gi~v~~l~Gd~-~~~~~~-~~~~~IiV~TPek~d~l~r~~~~~~~l~~v-~liIiDEaH~l~d~rg~~l 643 (2114)
.+.|...... . + ...+.. .+.... .....|+|+|..++...............- -+||+||||+... | .+
T Consensus 310 ~~~f~~~~~~-~--~-~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~--~-~~ 382 (667)
T TIGR00348 310 MKEFQSLQKD-C--A-ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY--G-EL 382 (667)
T ss_pred HHHHHhhCCC-C--C-cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc--h-HH
Confidence 9999886421 0 1 001110 010111 124689999999874321111100011111 2899999998542 1 12
Q ss_pred HHHHHHHHHHHhhccccccEEEEccccCChHHH--HHHHhccccCceEeec--C---CcccccceeEEEeecc------C
Q 000129 644 ESIVARTVRQIETTKEHIRLVGLSATLPNYEDV--ALFLRVNLEKGLFYFD--N---SYRPVPLSQQYIGIQV------K 710 (2114)
Q Consensus 644 e~iv~rl~~~~~~~~~~~riv~lSATlpn~~dv--a~~l~~~~~~~~~~f~--~---~~rpv~l~~~~~~~~~------~ 710 (2114)
...+. ..-++..++|||||.-...+- ...++......++.+. . .-..+|+. |.+... .
T Consensus 383 ~~~l~-------~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~--Y~~~~~~~~~~~~ 453 (667)
T TIGR00348 383 AKNLK-------KALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKID--YEDRLPEDHLDRK 453 (667)
T ss_pred HHHHH-------hhCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEE--EEecchhhccChH
Confidence 22221 123567899999994221111 1111110001111100 0 00011111 111000 0
Q ss_pred c-----------------h-----hH-HHHH---------hhHHHHHHHHHHh----C--CCeEEEEecChHHHHHHHHH
Q 000129 711 K-----------------P-----LQ-RFQL---------MNDLCYEKVVAVA----G--KHQVLIFVHSRKETAKTARA 752 (2114)
Q Consensus 711 ~-----------------~-----~~-~~~~---------~~~~~~~~i~~~~----~--~~~vLVFv~sr~~~~~~a~~ 752 (2114)
. . .+ .... ....+...+.++. . +++++|||.+|..|...++.
T Consensus 454 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~ 533 (667)
T TIGR00348 454 KLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNA 533 (667)
T ss_pred HHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHH
Confidence 0 0 00 0000 0011111222221 2 47999999999999999998
Q ss_pred HHHHhhccc-ccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCC-CHHHHHHHHHHHhC-CCceEEEechH
Q 000129 753 IRDTALEND-TLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGM-TRGDRQLVEDLFGD-GHVQVLVSTAT 829 (2114)
Q Consensus 753 L~~~~~~~~-~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl-~~~~R~~v~~~F~~-g~i~VLVaT~t 829 (2114)
|.+...... .....+............ ..+.+.. .++.- .......+.+.|++ +.++|||+++.
T Consensus 534 l~~~~~~~~~~~~vv~s~~~~~~~~~~~---------~~~~~~~----~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdm 600 (667)
T TIGR00348 534 LDEELNEKFEASAIVMTGKESDDAEIRD---------YNKHIRT----KFDKSDGFEIYYKDLERFKKEENPKLLIVVDM 600 (667)
T ss_pred HHhhcccccCCeeEEecCCccchhHHHH---------HHHHhcc----ccccchhhhHHHHHHHHhcCCCCceEEEEEcc
Confidence 876542210 000001000000000000 0000000 00000 01134568889976 78999999999
Q ss_pred hhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCC
Q 000129 830 LAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2114)
Q Consensus 830 la~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2114)
+..|+|.|.+.+++- |-+- .-..++|++||+.|+-...+-.++|+.-.
T Consensus 601 llTGFDaP~l~tLyl-----dKpl------k~h~LlQai~R~nR~~~~~K~~g~IvDy~ 648 (667)
T TIGR00348 601 LLTGFDAPILNTLYL-----DKPL------KYHGLLQAIARTNRIDGKDKTFGLIVDYR 648 (667)
T ss_pred cccccCCCccceEEE-----eccc------cccHHHHHHHHhccccCCCCCCEEEEECc
Confidence 999999999998874 3221 22348999999999522223335555443
No 235
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.64 E-value=1.8e-15 Score=181.49 Aligned_cols=289 Identities=23% Similarity=0.321 Sum_probs=192.2
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChh
Q 000129 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ 593 (2114)
Q Consensus 514 vlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~ 593 (2114)
++-+|||.||||.-| |+.+.... +.+|--|.|-||.|++.++.+. |+.+..+||.......
T Consensus 194 i~H~GPTNSGKTy~A----Lqrl~~ak-----------sGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~ 254 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYRA----LQRLKSAK-----------SGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVL 254 (700)
T ss_pred EEEeCCCCCchhHHH----HHHHhhhc-----------cceecchHHHHHHHHHHHhhhc----CCCccccccceeeecC
Confidence 677899999999865 45554432 5799999999999999998875 8999999997543222
Q ss_pred -hhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccC
Q 000129 594 -QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671 (2114)
Q Consensus 594 -~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlp 671 (2114)
.-..++.+-||-|+.+ .-..+.+.||||+++|.| .||..+...+--+ ....+.+.|=-|-++
T Consensus 255 ~~~~~a~hvScTVEM~s----------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl------~AdEiHLCGepsvld 318 (700)
T KOG0953|consen 255 DNGNPAQHVSCTVEMVS----------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGL------AADEIHLCGEPSVLD 318 (700)
T ss_pred CCCCcccceEEEEEEee----------cCCceEEEEehhHHhhcCcccchHHHHHHHhh------hhhhhhccCCchHHH
Confidence 1235778888888532 223478999999999999 6998887554333 223444444433333
Q ss_pred ChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHH
Q 000129 672 NYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTAR 751 (2114)
Q Consensus 672 n~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~ 751 (2114)
-|.+.+...... +....-.|-.|+.. . +.+...+ .....+.++| |-||+....+.+
T Consensus 319 ---lV~~i~k~TGd~--vev~~YeRl~pL~v-----~------------~~~~~sl-~nlk~GDCvV-~FSkk~I~~~k~ 374 (700)
T KOG0953|consen 319 ---LVRKILKMTGDD--VEVREYERLSPLVV-----E------------ETALGSL-SNLKPGDCVV-AFSKKDIFTVKK 374 (700)
T ss_pred ---HHHHHHhhcCCe--eEEEeecccCccee-----h------------hhhhhhh-ccCCCCCeEE-EeehhhHHHHHH
Confidence 233333322111 11111112222221 0 0111111 2233555555 557888887777
Q ss_pred HHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhC--CCceEEEechH
Q 000129 752 AIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGD--GHVQVLVSTAT 829 (2114)
Q Consensus 752 ~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~--g~i~VLVaT~t 829 (2114)
.+...+. ..+++.+|+|+++.|..--.+|.+ +..+|||||++
T Consensus 375 kIE~~g~------------------------------------~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDA 418 (700)
T KOG0953|consen 375 KIEKAGN------------------------------------HKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDA 418 (700)
T ss_pred HHHHhcC------------------------------------cceEEEecCCCCchhHHHHHHhCCCCCccceEEeecc
Confidence 7766542 226788999999999999999987 99999999999
Q ss_pred hhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCC-CcHHHHHHhhcC
Q 000129 830 LAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH-SELRYYLSLMNQ 900 (2114)
Q Consensus 830 la~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~-~e~~~~~~ll~~ 900 (2114)
.++|+|+.-.++|+..-..|+... ..+++..+..|.+|||||-|- +...+++-+-+ .++..+.+.++.
T Consensus 419 IGMGLNL~IrRiiF~sl~Kysg~e--~~~it~sqikQIAGRAGRf~s-~~~~G~vTtl~~eDL~~L~~~l~~ 487 (700)
T KOG0953|consen 419 IGMGLNLNIRRIIFYSLIKYSGRE--TEDITVSQIKQIAGRAGRFGS-KYPQGEVTTLHSEDLKLLKRILKR 487 (700)
T ss_pred cccccccceeEEEEeecccCCccc--ceeccHHHHHHHhhccccccc-CCcCceEEEeeHhhHHHHHHHHhC
Confidence 999999988888887777777543 578999999999999999763 23344444433 556666666554
No 236
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.64 E-value=3.4e-14 Score=187.51 Aligned_cols=126 Identities=20% Similarity=0.222 Sum_probs=102.9
Q ss_pred HHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecC
Q 000129 1562 PTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHE 1641 (2114)
Q Consensus 1562 ~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~ 1641 (2114)
..+..+......+.++||||+|++.++.++..|.. .+..+.++|+
T Consensus 430 ~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~-----------------------------------~gi~~~~lh~ 474 (655)
T TIGR00631 430 DLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKE-----------------------------------LGIKVRYLHS 474 (655)
T ss_pred HHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhh-----------------------------------hccceeeeeC
Confidence 34455555556788999999999999998876632 1335788999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEE
Q 000129 1642 GLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKC 1721 (2114)
Q Consensus 1642 ~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~ 1721 (2114)
+++..+|..+++.|+.|.++|||||+.+++|+|+|.+.+|| .++.. .+..|.+..+|+||+|||||. ..|+|
T Consensus 475 ~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVv----i~Dad-ifG~p~~~~~~iqriGRagR~---~~G~v 546 (655)
T TIGR00631 475 EIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVA----ILDAD-KEGFLRSERSLIQTIGRAARN---VNGKV 546 (655)
T ss_pred CCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEE----EeCcc-cccCCCCHHHHHHHhcCCCCC---CCCEE
Confidence 99999999999999999999999999999999999999877 12222 334677899999999999995 58999
Q ss_pred EEEeecCcH
Q 000129 1722 VILCHAPRK 1730 (2114)
Q Consensus 1722 iil~~~~~~ 1730 (2114)
++++.....
T Consensus 547 i~~~~~~~~ 555 (655)
T TIGR00631 547 IMYADKITD 555 (655)
T ss_pred EEEEcCCCH
Confidence 999886554
No 237
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.61 E-value=1.9e-13 Score=175.01 Aligned_cols=288 Identities=20% Similarity=0.211 Sum_probs=172.0
Q ss_pred hHHHHHhcC--CCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHH
Q 000129 1330 PLYEALYQG--FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (2114)
Q Consensus 1330 ~~~~~l~~g--f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~ 1407 (2114)
+.++.+|.. ...|...|+-....++.+ ++.-+.||||.|||+-..+..+-... .++ +++||+||..|+.|++
T Consensus 69 e~~~~fF~k~~G~~~ws~QR~WakR~~rg-~SFaiiAPTGvGKTTfg~~~sl~~a~---kgk--r~yii~PT~~Lv~Q~~ 142 (1187)
T COG1110 69 EEFEEFFKKATGFRPWSAQRVWAKRLVRG-KSFAIIAPTGVGKTTFGLLMSLYLAK---KGK--RVYIIVPTTTLVRQVY 142 (1187)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHcC-CceEEEcCCCCchhHHHHHHHHHHHh---cCC--eEEEEecCHHHHHHHH
Confidence 446666662 238999999999999884 55999999999999866544442222 244 9999999999999999
Q ss_pred HHHHHHhcCCCC-cEEEE-EcCCcccc-----hhhccC--CcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC
Q 000129 1408 RDWEIKFGQGLG-MRVVE-LTGETAMD-----LKLLEK--GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (2114)
Q Consensus 1408 ~~~~~~f~~~~g-~~v~~-l~G~~~~~-----~~~l~~--~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~ 1478 (2114)
++++ .|+...| ..+.. .+|..+.. ...+.+ .||+|+|..-+..-.... .--++++|++|++|.+.-
T Consensus 143 ~kl~-~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L----~~~kFdfifVDDVDA~Lk 217 (1187)
T COG1110 143 ERLK-KFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEEL----SKLKFDFIFVDDVDAILK 217 (1187)
T ss_pred HHHH-HHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHh----cccCCCEEEEccHHHHHh
Confidence 9998 5664323 33322 66765443 234454 489999976533222211 113689999999996542
Q ss_pred CC----------CchHHHH------------------HHHHHHHHh--------hcCCCceEEEEcccCCChh----HHH
Q 000129 1479 QG----------GPVLEVI------------------VSRMRYIAS--------QVENKIRIVALSTSLANAK----DLG 1518 (2114)
Q Consensus 1479 ~~----------g~~le~i------------------~srl~~i~~--------~~~~~~riV~lSATl~n~~----dla 1518 (2114)
.. |-.=|.+ ..+.+.+.. +-.+..++|..|||..... -+.
T Consensus 218 askNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfR 297 (1187)
T COG1110 218 ASKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFR 297 (1187)
T ss_pred ccccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHH
Confidence 11 2111111 111111111 1124578999999985432 334
Q ss_pred HHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCC---hHHHHHHHHHHH
Q 000129 1519 EWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPS---RKYVRLTAVDLM 1595 (2114)
Q Consensus 1519 ~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~s---r~~a~~la~~L~ 1595 (2114)
+.+| |.......-+.-.+..+.... .......+.+.+ +.-.||||+. +..++.++..|.
T Consensus 298 eLlg--------FevG~~~~~LRNIvD~y~~~~--------~~e~~~elvk~l--G~GgLIfV~~d~G~e~aeel~e~Lr 359 (1187)
T COG1110 298 ELLG--------FEVGSGGEGLRNIVDIYVESE--------SLEKVVELVKKL--GDGGLIFVPIDYGREKAEELAEYLR 359 (1187)
T ss_pred HHhC--------CccCccchhhhheeeeeccCc--------cHHHHHHHHHHh--CCCeEEEEEcHHhHHHHHHHHHHHH
Confidence 4444 333322222222222222111 111122233332 4468999999 666666665442
Q ss_pred HhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEec----Ccccc
Q 000129 1596 TYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMS----SSMCW 1671 (2114)
Q Consensus 1596 ~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT----~~la~ 1671 (2114)
. .+..+..+|++ .+..++.|..|+++|||+. .++.|
T Consensus 360 ~-----------------------------------~Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVR 399 (1187)
T COG1110 360 S-----------------------------------HGINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVR 399 (1187)
T ss_pred h-----------------------------------cCceEEEeecc-----chhhhhhhccCceeEEEEecccccceee
Confidence 2 23456777773 3778899999999999987 56999
Q ss_pred ccCCCC-cEEEE-Eeee
Q 000129 1672 GVPLTA-HLVVV-MGTQ 1686 (2114)
Q Consensus 1672 Gvdip~-~~vVI-~gt~ 1686 (2114)
|+|+|. ++++| .|.+
T Consensus 400 GlDLP~rirYaIF~GvP 416 (1187)
T COG1110 400 GLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred cCCchhheeEEEEecCC
Confidence 999995 44444 5655
No 238
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.61 E-value=2.2e-14 Score=181.57 Aligned_cols=310 Identities=15% Similarity=0.159 Sum_probs=184.2
Q ss_pred CCCCHHHHHHHHHHH----cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000129 1340 KHFNPIQTQVFTVLY----NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il----~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~ 1415 (2114)
..++.+|..|+..+. .++..+|+++.||+|||..| ++|+..|.+....+ |+|+++-+++|+.|.+..+.. |-
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~~~~K--RVLFLaDR~~Lv~QA~~af~~-~~ 239 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKSGWVK--RVLFLADRNALVDQAYGAFED-FL 239 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhcchhh--eeeEEechHHHHHHHHHHHHH-hC
Confidence 468999999998764 45667999999999999998 45555555544455 999999999999999998884 44
Q ss_pred CCCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhh-c--ccccccceeEEEecccccccCCCCchHHHHHHHHH
Q 000129 1416 QGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRW-K--QRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMR 1492 (2114)
Q Consensus 1416 ~~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~-~--~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~ 1492 (2114)
.. +-.+..+.+.... ..++|.|+|...+......- . .+.....++||||||||+=.-. -+..++ -
T Consensus 240 P~-~~~~n~i~~~~~~-----~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~---~~~~I~---d 307 (875)
T COG4096 240 PF-GTKMNKIEDKKGD-----TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYS---EWSSIL---D 307 (875)
T ss_pred CC-ccceeeeecccCC-----cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHh---hhHHHH---H
Confidence 33 4444444442221 25689999999876655432 1 1224556999999999953111 111222 2
Q ss_pred HHHhhcCCCceEEEEcccCCChhH--HHHHh-cCCCCceeec--------CCCCCccCcE--EEEecccccchHHH----
Q 000129 1493 YIASQVENKIRIVALSTSLANAKD--LGEWI-GATSHGLFNF--------PPGVRPVPLE--IHIQGVDITNFEAR---- 1555 (2114)
Q Consensus 1493 ~i~~~~~~~~riV~lSATl~n~~d--la~wl-~~~~~~~~~f--------~~~~rpv~l~--~~~~~~~~~~~~~~---- 1555 (2114)
+.. ...++++||+.+..+ --.++ |.+. ..|.. -..++++.+. ....|.....-..+
T Consensus 308 YFd------A~~~gLTATP~~~~d~~T~~~F~g~Pt-~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~ 380 (875)
T COG4096 308 YFD------AATQGLTATPKETIDRSTYGFFNGEPT-YAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQ 380 (875)
T ss_pred HHH------HHHHhhccCcccccccccccccCCCcc-eeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhh
Confidence 221 234666999876432 23345 3321 11110 0112222222 22222221111000
Q ss_pred ------------------H---HhcCHHHHHHHHHHhcC------CCCEEEEeCChHHHHHHHHHHHHhhccCCcccccc
Q 000129 1556 ------------------M---QAMTKPTFTAIVQHAKN------EKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAF 1608 (2114)
Q Consensus 1556 ------------------~---~~~~~~~~~~i~~~l~~------~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~ 1608 (2114)
. ..-...+...+..++.. -+++||||.+..+|+.+...+.......+
T Consensus 381 g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~------ 454 (875)
T COG4096 381 GEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYN------ 454 (875)
T ss_pred ccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCcccc------
Confidence 0 00011222333344444 35799999999999999988755332110
Q ss_pred cCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHh-cCCceEEEecCccccccCCCCcEEEEEeeeE
Q 000129 1609 LLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFE-AGKIKVCVMSSSMCWGVPLTAHLVVVMGTQY 1687 (2114)
Q Consensus 1609 l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~-~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~ 1687 (2114)
+.=+..+.+. ....+..+-.-+. +.--+|.|+.+++..|||+|.+..+|
T Consensus 455 ------------------------~~~a~~IT~d-~~~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlV----- 504 (875)
T COG4096 455 ------------------------GRYAMKITGD-AEQAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLV----- 504 (875)
T ss_pred ------------------------CceEEEEecc-chhhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeee-----
Confidence 0113334433 2344444544444 34568999999999999999888777
Q ss_pred ecCCcCcCCCCCHhHHHHhHcccCCC
Q 000129 1688 YDGQENAHTDYPVTDLLQMMGHASRP 1713 (2114)
Q Consensus 1688 yd~~~~~~~~~s~~~~lQr~GRAGR~ 1713 (2114)
-.-.-.|.+-|.||+||+-|.
T Consensus 505 -----F~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 505 -----FDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred -----ehhhhhhHHHHHHHhcCcccc
Confidence 122235889999999999996
No 239
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.60 E-value=1.8e-14 Score=171.25 Aligned_cols=355 Identities=13% Similarity=0.040 Sum_probs=229.0
Q ss_pred hhhHhhcCCC--CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHH
Q 000129 484 EWAQPAFKGM--TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (2114)
Q Consensus 484 ~~~~~~f~g~--~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ra 561 (2114)
+.+...+.|. +.+..+|.+++..+-+ ++|+++.-.|.|||.+|+.++....+..... ...+|+.||++
T Consensus 273 E~~~~~~~~~~~E~~~~~~~~~~~~~~~-G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~---------s~~~~~~~~~~ 342 (1034)
T KOG4150|consen 273 ESIRSLLNKNTGESGIAISLELLKFASE-GRADGGNEARQAGKGTCPTSGSRKFQTLCHA---------TNSLLPSEMVE 342 (1034)
T ss_pred HHHHHHHhcccccchhhhhHHHHhhhhh-cccccccchhhcCCccCcccchhhhhhcCcc---------cceecchhHHH
Confidence 3444555444 4678899999997654 5679999999999999999988877665432 25789999999
Q ss_pred HHHHHHHHHHHhhccC----CcEEEEEeCCCccChhh--hccceEEEcCHhHH--HHHHhccCCCcccccccEEEEeccc
Q 000129 562 LVAEVVGNLSNRLQMY----DVKVRELSGDQTLTRQQ--IEETQIIVTTPEKW--DIITRKSGDRTYTQLVKLLIIDEIH 633 (2114)
Q Consensus 562 La~q~~~~~~~~~~~~----gi~v~~l~Gd~~~~~~~--~~~~~IiV~TPek~--d~l~r~~~~~~~l~~v~liIiDEaH 633 (2114)
+++...+.+.-.+... +--|....|+...++.. ..+.+++++.|... ..+......+.++-...+++.||+|
T Consensus 343 ~~~~~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~ 422 (1034)
T KOG4150|consen 343 HLRNGSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCA 422 (1034)
T ss_pred HhhccCCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhccccee
Confidence 9987755443222110 12233344444444432 35789999999985 3333333334455567899999999
Q ss_pred ccccCCchhHHHHHHHHHHHHhh--ccccccEEEEccccCChHHHHHHH-hccccCceEeecCCcccccceeEEEe----
Q 000129 634 LLHDNRGPVLESIVARTVRQIET--TKEHIRLVGLSATLPNYEDVALFL-RVNLEKGLFYFDNSYRPVPLSQQYIG---- 706 (2114)
Q Consensus 634 ~l~d~rg~~le~iv~rl~~~~~~--~~~~~riv~lSATlpn~~dva~~l-~~~~~~~~~~f~~~~rpv~l~~~~~~---- 706 (2114)
.+...+|......+.++.+.... ...+.+++-.|||+.+......-+ +.+ .-.+...+++ |..-...++-
T Consensus 423 ~Y~~~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~-E~~Li~~DGS--Ps~~K~~V~WNP~~ 499 (1034)
T KOG4150|consen 423 LYLFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLS-ELELVTIDGS--PSSEKLFVLWNPSA 499 (1034)
T ss_pred eeecchhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCc-ceEEEEecCC--CCccceEEEeCCCC
Confidence 99877787777777776665433 245789999999997654443333 322 2223333333 2221111110
Q ss_pred --eccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhccc
Q 000129 707 --IQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMV 784 (2114)
Q Consensus 707 --~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~ 784 (2114)
....+..........++.+.+. .+-++|-||.+|+-|+-+.+..++...+...
T Consensus 500 ~P~~~~~~~~~i~E~s~~~~~~i~---~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~---------------------- 554 (1034)
T KOG4150|consen 500 PPTSKSEKSSKVVEVSHLFAEMVQ---HGLRCIAFCPSRKLCELVLCLTREILAETAP---------------------- 554 (1034)
T ss_pred CCcchhhhhhHHHHHHHHHHHHHH---cCCcEEEeccHHHHHHHHHHHHHHHHHHhhH----------------------
Confidence 0111111222222333333222 2568999999999999887776665433211
Q ss_pred CcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHH
Q 000129 785 KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDI 864 (2114)
Q Consensus 785 ~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~ 864 (2114)
.|. ..|..+.||-+.++|+.++...-.|++.-+|||++|+-|||+...+.|++-..| +|.+.+
T Consensus 555 ---~LV----~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP----------~S~aNl 617 (1034)
T KOG4150|consen 555 ---HLV----EAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFP----------GSIANL 617 (1034)
T ss_pred ---HHH----HHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCc----------hhHHHH
Confidence 000 012345899999999999999999999999999999999999999999984433 378899
Q ss_pred HHhhcccCCCCCCCceEEEEEcCC-CcHHHHH
Q 000129 865 MQMLGRAGRPQYDSYGEGIIITGH-SELRYYL 895 (2114)
Q Consensus 865 ~Qr~GRAGR~g~d~~G~~iil~~~-~e~~~~~ 895 (2114)
.|.+|||||.. +.+.++.+... +-.++|.
T Consensus 618 ~QQ~GRAGRRN--k~SLavyva~~~PVDQ~Y~ 647 (1034)
T KOG4150|consen 618 WQQAGRAGRRN--KPSLAVYVAFLGPVDQYYM 647 (1034)
T ss_pred HHHhccccccC--CCceEEEEEeccchhhHhh
Confidence 99999999976 44555555443 2334554
No 240
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.60 E-value=3.6e-14 Score=186.54 Aligned_cols=343 Identities=14% Similarity=0.081 Sum_probs=202.7
Q ss_pred EecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccc-----hhhcc
Q 000129 1363 AAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD-----LKLLE 1437 (2114)
Q Consensus 1363 ~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~-----~~~l~ 1437 (2114)
.+.+|||||.+|+-.+-..+.. ++ .+|+++|..+|+.|+.++++++|+. ..|+.++++.+.. +..+.
T Consensus 166 ~~~~GSGKTevyl~~i~~~l~~---Gk--~vLvLvPEi~lt~q~~~rl~~~f~~---~~v~~lhS~l~~~~R~~~w~~~~ 237 (665)
T PRK14873 166 QALPGEDWARRLAAAAAATLRA---GR--GALVVVPDQRDVDRLEAALRALLGA---GDVAVLSAGLGPADRYRRWLAVL 237 (665)
T ss_pred hcCCCCcHHHHHHHHHHHHHHc---CC--eEEEEecchhhHHHHHHHHHHHcCC---CcEEEECCCCCHHHHHHHHHHHh
Confidence 3446999999998877777665 55 8999999999999999999998862 4688899887654 22223
Q ss_pred C--CcEEEEChhhHHHHHhhhcccccccceeEEEeccccc--ccCCCCchH---HHHHHHHHHHHhhcCCCceEEEEccc
Q 000129 1438 K--GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHL--IGGQGGPVL---EVIVSRMRYIASQVENKIRIVALSTS 1510 (2114)
Q Consensus 1438 ~--~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~--l~~~~g~~l---e~i~srl~~i~~~~~~~~riV~lSAT 1510 (2114)
. .+|+|+| +..-...+.++++|||||-|- +.+++++.| +..+-|-+ ..+..+|+.|||
T Consensus 238 ~G~~~IViGt---------RSAvFaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~------~~~~~lvLgSaT 302 (665)
T PRK14873 238 RGQARVVVGT---------RSAVFAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAH------QHGCALLIGGHA 302 (665)
T ss_pred CCCCcEEEEc---------ceeEEeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHH------HcCCcEEEECCC
Confidence 3 4899999 545567899999999999993 333445543 22222222 347899999999
Q ss_pred CCChhHHHHHhcCCCCceeecCCC---CCccCcEEEEecccccchH----HHHHhcCHHHHHHHHHHhcCCCCEEEEeCC
Q 000129 1511 LANAKDLGEWIGATSHGLFNFPPG---VRPVPLEIHIQGVDITNFE----ARMQAMTKPTFTAIVQHAKNEKPALVFVPS 1583 (2114)
Q Consensus 1511 l~n~~dla~wl~~~~~~~~~f~~~---~rpv~l~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~l~~~~~~LVFv~s 1583 (2114)
++ .+ .|.......+...... .+...-.+++.+....... .....+.......+.+.+..+ |+|||+|.
T Consensus 303 PS-le---s~~~~~~g~~~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~g-qvll~lnR 377 (665)
T PRK14873 303 RT-AE---AQALVESGWAHDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHG-PVLVQVPR 377 (665)
T ss_pred CC-HH---HHHHHhcCcceeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcC-cEEEEecC
Confidence 74 32 3322222111111111 1111113333332110000 001125667788888888878 99999999
Q ss_pred hHHH-----HHHHHH-------------------HHHhhccCCcccccccCCCcccchhh---HhhhhHHHHHHHhccce
Q 000129 1584 RKYV-----RLTAVD-------------------LMTYSSMDGDQKSAFLLWPAEEVEPF---IDNIQEEMLKATLRHGV 1636 (2114)
Q Consensus 1584 r~~a-----~~la~~-------------------L~~~~~~~~~~~~~~l~~~~~~l~~~---~~~i~d~~L~~~l~~gV 1636 (2114)
|.-+ ..+... .|++|.....+.. |..|....+... .+++.++.-..+....|
T Consensus 378 rGyap~l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~-Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V 456 (665)
T PRK14873 378 RGYVPSLACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWR-CPRCGSDRLRAVVVGARRTAEELGRAFPGVPV 456 (665)
T ss_pred CCCCCeeEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCcc-CCCCcCCcceeeeccHHHHHHHHHHHCCCCCE
Confidence 8743 222111 1333333222222 445544443322 44444444444444455
Q ss_pred EeecCCCCHHHHHHHHHHHhcCCceEEEecC----ccccccCCCCcEEE-EEeee--EecCCcCcCCCCCHhHHHHhHcc
Q 000129 1637 GYLHEGLNKTDQEVVSALFEAGKIKVCVMSS----SMCWGVPLTAHLVV-VMGTQ--YYDGQENAHTDYPVTDLLQMMGH 1709 (2114)
Q Consensus 1637 ~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~----~la~Gvdip~~~vV-I~gt~--~yd~~~~~~~~~s~~~~lQr~GR 1709 (2114)
...- +..+++.|. ++.+|||+|. +++ | .+..| |.+.. .+.+. -+.......-+.|-+||
T Consensus 457 ~r~d-------~d~~l~~~~-~~~~IlVGTqgaepm~~-g----~~~lV~ildaD~~L~~pD-fRA~Er~~qll~qvagr 522 (665)
T PRK14873 457 VTSG-------GDQVVDTVD-AGPALVVATPGAEPRVE-G----GYGAALLLDAWALLGRQD-LRAAEDTLRRWMAAAAL 522 (665)
T ss_pred EEEC-------hHHHHHhhc-cCCCEEEECCCCccccc-C----CceEEEEEcchhhhcCCC-cChHHHHHHHHHHHHHh
Confidence 5432 335888897 5999999999 665 3 33433 32221 11111 11122236677899999
Q ss_pred cCCCCCCCceEEEEEeecCcHHHH------------HHHH---HhccCCCCccccCC
Q 000129 1710 ASRPLLDNSGKCVILCHAPRKEYY------------KKFL---RLTQNPNYYNLQGV 1751 (2114)
Q Consensus 1710 AGR~~~~~~G~~iil~~~~~~~~~------------~~~l---Rl~~nP~~y~l~~~ 1751 (2114)
|||. +..|.+++.+ .++...+ +.-+ +....|+|..+..+
T Consensus 523 agr~--~~~G~V~iq~-~p~~~~~~~l~~~d~~~F~~~EL~~R~~~~~PPf~~la~i 576 (665)
T PRK14873 523 VRPR--ADGGQVVVVA-ESSLPTVQALIRWDPVGHAERELAERAEVGFPPAVRMAAV 576 (665)
T ss_pred hcCC--CCCCEEEEEe-CCCCHHHHHHHhCCHHHHHHHHHHHHHHcCccCceeeEEE
Confidence 9997 7889999986 4443222 2222 66778988877655
No 241
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.60 E-value=9.3e-14 Score=175.99 Aligned_cols=310 Identities=17% Similarity=0.252 Sum_probs=177.9
Q ss_pred CCCCCHHHHHHHHHHH----cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHH
Q 000129 493 MTQLNRVQSRVYKSAL----SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVG 568 (2114)
Q Consensus 493 ~~~l~~iQ~~~i~~~l----~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~ 568 (2114)
-..++.+|..||..+. .++..+|+++.||+|||.+|+..|.+.+..+. -.++|+++-+++|+.|.+.
T Consensus 163 ~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~---------~KRVLFLaDR~~Lv~QA~~ 233 (875)
T COG4096 163 AIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGW---------VKRVLFLADRNALVDQAYG 233 (875)
T ss_pred cccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcch---------hheeeEEechHHHHHHHHH
Confidence 3578999999997654 34456999999999999998655554443332 2389999999999999999
Q ss_pred HHHHhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHH-HHHHhc-c-CCCcccccccEEEEecccccccCCchhHHH
Q 000129 569 NLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRK-S-GDRTYTQLVKLLIIDEIHLLHDNRGPVLES 645 (2114)
Q Consensus 569 ~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~-d~l~r~-~-~~~~~l~~v~liIiDEaH~l~d~rg~~le~ 645 (2114)
.|...+. .+-.+..+.+-... ..++|.|+|...+ ..+... . ........++||||||||+=.- .....
T Consensus 234 af~~~~P-~~~~~n~i~~~~~~-----~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~---~~~~~ 304 (875)
T COG4096 234 AFEDFLP-FGTKMNKIEDKKGD-----TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIY---SEWSS 304 (875)
T ss_pred HHHHhCC-CccceeeeecccCC-----cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHH---hhhHH
Confidence 9887654 45445444443221 1579999999986 333322 1 1123345589999999997211 11223
Q ss_pred HHHHHHHHHhhccccccEEEEccccCChHHHH--HHHhccccCceEeec----------CCccccc--ceeEEEeeccCc
Q 000129 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVA--LFLRVNLEKGLFYFD----------NSYRPVP--LSQQYIGIQVKK 711 (2114)
Q Consensus 646 iv~rl~~~~~~~~~~~riv~lSATlpn~~dva--~~l~~~~~~~~~~f~----------~~~rpv~--l~~~~~~~~~~~ 711 (2114)
|+..+ ....+|++||..+-.+.. .|+.. .+++.++ ..++++. +....-|.....
T Consensus 305 I~dYF---------dA~~~gLTATP~~~~d~~T~~~F~g---~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~ 372 (875)
T COG4096 305 ILDYF---------DAATQGLTATPKETIDRSTYGFFNG---EPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDA 372 (875)
T ss_pred HHHHH---------HHHHHhhccCcccccccccccccCC---CcceeecHHHHhhccccCCCCceEEeeeccccCcCcCc
Confidence 43332 122367799965422222 22211 1111100 0122211 111111111110
Q ss_pred hh----------------------HH---HHHhhHHHHHHHHHHh-----C--CCeEEEEecChHHHHHHHHHHHHHhhc
Q 000129 712 PL----------------------QR---FQLMNDLCYEKVVAVA-----G--KHQVLIFVHSRKETAKTARAIRDTALE 759 (2114)
Q Consensus 712 ~~----------------------~~---~~~~~~~~~~~i~~~~-----~--~~~vLVFv~sr~~~~~~a~~L~~~~~~ 759 (2114)
.. .+ ...-.+.+...+.+.. + -+++||||.+..+|+.++..|......
T Consensus 373 ~serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype 452 (875)
T COG4096 373 GSEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPE 452 (875)
T ss_pred cchhhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCcc
Confidence 00 00 0000111111122211 1 358999999999999999998875433
Q ss_pred ccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHh-CCCceEEEechHhhhhcCCCc
Q 000129 760 NDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFG-DGHVQVLVSTATLAWGVNLPA 838 (2114)
Q Consensus 760 ~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~-~g~i~VLVaT~tla~GVdlP~ 838 (2114)
... .+ +-...+. ....+..+-+.+. +.-.+|.|+.+.+..|||+|.
T Consensus 453 ~~~--~~------------------------------a~~IT~d-~~~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpe 499 (875)
T COG4096 453 YNG--RY------------------------------AMKITGD-AEQAQALIDNFIDKEKYPRIAITVDLLTTGVDVPE 499 (875)
T ss_pred ccC--ce------------------------------EEEEecc-chhhHHHHHHHHhcCCCCceEEehhhhhcCCCchh
Confidence 110 00 1111222 2333444444443 456789999999999999999
Q ss_pred eEEEEecceeccCCCCccccCCHHHHHHhhcccCCCC
Q 000129 839 HTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQ 875 (2114)
Q Consensus 839 v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g 875 (2114)
+..+| ++-.- .|..-|.||+||+-|.-
T Consensus 500 v~nlV-----F~r~V-----rSktkF~QMvGRGTRl~ 526 (875)
T COG4096 500 VVNLV-----FDRKV-----RSKTKFKQMVGRGTRLC 526 (875)
T ss_pred eeeee-----ehhhh-----hhHHHHHHHhcCccccC
Confidence 98888 33322 27888999999999953
No 242
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.60 E-value=9.2e-14 Score=187.98 Aligned_cols=324 Identities=18% Similarity=0.217 Sum_probs=186.2
Q ss_pred CCCHHHHHHHHHHH---cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 495 QLNRVQSRVYKSAL---SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l---~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
+|.++|.+.+.-++ ..+.+.|++-..|.|||+.++..+ ..+..... ....+|||+|. +|..++.++|.
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL-~~L~~~~~-------~~gp~LIVvP~-SlL~nW~~Ei~ 239 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLL-GYLHEYRG-------ITGPHMVVAPK-STLGNWMNEIR 239 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHH-HHHHHhcC-------CCCCEEEEeCh-HHHHHHHHHHH
Confidence 78999999998664 355678999999999999875443 33332211 11258999995 77789999998
Q ss_pred HhhccCCcEEEEEeCCCccChhh------hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHH
Q 000129 572 NRLQMYDVKVRELSGDQTLTRQQ------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES 645 (2114)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~~~------~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~ 645 (2114)
+++. .+++..++|+....... ....+|+|+|.+.+. +.... ..--..++||+||+|.+.....
T Consensus 240 kw~p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~---~e~~~-L~k~~W~~VIvDEAHrIKN~~S----- 308 (1033)
T PLN03142 240 RFCP--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAI---KEKTA-LKRFSWRYIIIDEAHRIKNENS----- 308 (1033)
T ss_pred HHCC--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHH---HHHHH-hccCCCCEEEEcCccccCCHHH-----
Confidence 8764 46788888865322111 235789999999752 11100 1112357999999999864221
Q ss_pred HHHHHHHHHhhccccccEEEEccccC--ChHHHHHHHhccccCceEe----e------cC-------------Cccc---
Q 000129 646 IVARTVRQIETTKEHIRLVGLSATLP--NYEDVALFLRVNLEKGLFY----F------DN-------------SYRP--- 697 (2114)
Q Consensus 646 iv~rl~~~~~~~~~~~riv~lSATlp--n~~dva~~l~~~~~~~~~~----f------~~-------------~~rp--- 697 (2114)
.+++.++.+ .. ...++||+|.- |..++...+..-.+ +.|. | .. -.+|
T Consensus 309 klskalr~L---~a-~~RLLLTGTPlqNnl~ELwsLL~FL~P-~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~L 383 (1033)
T PLN03142 309 LLSKTMRLF---ST-NYRLLITGTPLQNNLHELWALLNFLLP-EIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLL 383 (1033)
T ss_pred HHHHHHHHh---hc-CcEEEEecCCCCCCHHHHHHHHhcCCC-CcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHh
Confidence 122222222 22 33488999931 23443333221100 0000 0 00 0000
Q ss_pred ----------c-cceeEEEeeccCchhHH-HHH------------------hh------HHH------------------
Q 000129 698 ----------V-PLSQQYIGIQVKKPLQR-FQL------------------MN------DLC------------------ 723 (2114)
Q Consensus 698 ----------v-~l~~~~~~~~~~~~~~~-~~~------------------~~------~~~------------------ 723 (2114)
. |.....+.+........ +.. ++ ..|
T Consensus 384 RR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~ 463 (1033)
T PLN03142 384 RRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTG 463 (1033)
T ss_pred hhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccch
Confidence 0 11111111111110000 000 00 000
Q ss_pred ------------HHHHHHH--hCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchh
Q 000129 724 ------------YEKVVAV--AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDL 789 (2114)
Q Consensus 724 ------------~~~i~~~--~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L 789 (2114)
...++.. ..+.++|||+........+...|..
T Consensus 464 e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~---------------------------------- 509 (1033)
T PLN03142 464 EHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMY---------------------------------- 509 (1033)
T ss_pred hHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHH----------------------------------
Confidence 0000100 1134555555544333333332221
Q ss_pred hhhccCceEEecCCCCHHHHHHHHHHHhC---CCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHH
Q 000129 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGD---GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQ 866 (2114)
Q Consensus 790 ~~ll~~gv~~hHagl~~~~R~~v~~~F~~---g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Q 866 (2114)
..+++..+||+++..+|..+++.|.+ +..-+|++|.+.+.|||+...++||.++..|+|. ...|
T Consensus 510 ---~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~----------~d~Q 576 (1033)
T PLN03142 510 ---RGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQ----------VDLQ 576 (1033)
T ss_pred ---cCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChH----------HHHH
Confidence 12456677999999999999999964 3346789999999999999999999966666554 6999
Q ss_pred hhcccCCCCCCCceEEEEEcCCCc
Q 000129 867 MLGRAGRPQYDSYGEGIIITGHSE 890 (2114)
Q Consensus 867 r~GRAGR~g~d~~G~~iil~~~~e 890 (2114)
++|||-|.|..+.-.+|.+++.+.
T Consensus 577 AidRaHRIGQkk~V~VyRLIt~gT 600 (1033)
T PLN03142 577 AQDRAHRIGQKKEVQVFRFCTEYT 600 (1033)
T ss_pred HHHHhhhcCCCceEEEEEEEeCCc
Confidence 999999999766666666666654
No 243
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.58 E-value=2.3e-13 Score=184.12 Aligned_cols=351 Identities=15% Similarity=0.190 Sum_probs=188.3
Q ss_pred CCCHHHHHHHHHHH---cCCCcEEEEecCCCchHHHHHHHHHHHhhhc-cCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000129 1341 HFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKA-SETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il---~~~~nvli~ApTGSGKTl~~~l~il~~l~~~-~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~ 1416 (2114)
.+.|+|.+.+.-++ ..+.+.|++-..|.|||+.+. +++..+... ...+ .+|||||. +++.++.+.+. +|..
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaI-alL~~L~~~~~~~g--p~LIVvP~-SlL~nW~~Ei~-kw~p 243 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTI-SLLGYLHEYRGITG--PHMVVAPK-STLGNWMNEIR-RFCP 243 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHH-HHHHHHHHhcCCCC--CEEEEeCh-HHHHHHHHHHH-HHCC
Confidence 68899999998764 456679999999999999874 444444331 2233 78999996 67788888887 4543
Q ss_pred CCCcEEEEEcCCcccchh------hccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHH
Q 000129 1417 GLGMRVVELTGETAMDLK------LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSR 1490 (2114)
Q Consensus 1417 ~~g~~v~~l~G~~~~~~~------~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~sr 1490 (2114)
..++..++|....... .....+|+|+|.+.+....... .--..++||+||||.+..... .+++
T Consensus 244 --~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L----~k~~W~~VIvDEAHrIKN~~S-----klsk 312 (1033)
T PLN03142 244 --VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTAL----KRFSWRYIIIDEAHRIKNENS-----LLSK 312 (1033)
T ss_pred --CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHh----ccCCCCEEEEcCccccCCHHH-----HHHH
Confidence 4678888886543211 1134589999998864322211 112467999999999975432 1111
Q ss_pred HHHHHhhcCCCceEEEEcccCCC--hhH------------------HHHHhcCCCCc-----eeecCCCCCc--------
Q 000129 1491 MRYIASQVENKIRIVALSTSLAN--AKD------------------LGEWIGATSHG-----LFNFPPGVRP-------- 1537 (2114)
Q Consensus 1491 l~~i~~~~~~~~riV~lSATl~n--~~d------------------la~wl~~~~~~-----~~~f~~~~rp-------- 1537 (2114)
....+... ..++||+|+-. ..+ +..|+...... +-.+..-.+|
T Consensus 313 ---alr~L~a~-~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~Ks 388 (1033)
T PLN03142 313 ---TMRLFSTN-YRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKS 388 (1033)
T ss_pred ---HHHHhhcC-cEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHH
Confidence 11122233 44788999732 223 33333321100 0000000000
Q ss_pred -----cC-cEEEEecccccchHHH-----HH----hc----CH-HHHHHHHHH-hcCCCCEEE--------EeCChH---
Q 000129 1538 -----VP-LEIHIQGVDITNFEAR-----MQ----AM----TK-PTFTAIVQH-AKNEKPALV--------FVPSRK--- 1585 (2114)
Q Consensus 1538 -----v~-l~~~~~~~~~~~~~~~-----~~----~~----~~-~~~~~i~~~-l~~~~~~LV--------Fv~sr~--- 1585 (2114)
.| ....+..+........ +. .+ .. .....+... .....|.|+ +.....
T Consensus 389 dV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie 468 (1033)
T PLN03142 389 DVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVE 468 (1033)
T ss_pred HHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhh
Confidence 01 0111111111110000 00 00 00 000000000 000011110 000000
Q ss_pred ---HHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcC---C
Q 000129 1586 ---YVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAG---K 1659 (2114)
Q Consensus 1586 ---~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g---~ 1659 (2114)
....+ ..|...+...+ .+..+.+ .....++.+.+. + ...+++...+||+++..+|..+++.|.+. .
T Consensus 469 ~SgKl~lL-dkLL~~Lk~~g--~KVLIFS---Qft~~LdiLed~-L-~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~ 540 (1033)
T PLN03142 469 NSGKMVLL-DKLLPKLKERD--SRVLIFS---QMTRLLDILEDY-L-MYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEK 540 (1033)
T ss_pred hhhHHHHH-HHHHHHHHhcC--CeEEeeh---hHHHHHHHHHHH-H-HHcCCcEEEECCCCCHHHHHHHHHHhccccCCc
Confidence 00001 11111111110 1101110 011111111111 1 22356788899999999999999999753 3
Q ss_pred ceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCc
Q 000129 1660 IKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1660 i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~ 1729 (2114)
.-+|++|.+++.|||+....+|| +++.+.++....|++|||-|.|....-.++.|+....
T Consensus 541 ~VfLLSTrAGGlGINLt~Ad~VI----------iyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gT 600 (1033)
T PLN03142 541 FVFLLSTRAGGLGINLATADIVI----------LYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYT 600 (1033)
T ss_pred eEEEEeccccccCCchhhCCEEE----------EeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCc
Confidence 46799999999999999999999 7899999999999999999998777777788877764
No 244
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.58 E-value=1.4e-14 Score=190.26 Aligned_cols=331 Identities=15% Similarity=0.069 Sum_probs=200.5
Q ss_pred ccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh---
Q 000129 518 APTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ--- 594 (2114)
Q Consensus 518 APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~--- 594 (2114)
+.+|||||.+|+-.+-..+..++ .+|+++|..+|+.|+.++|+++|+ +..|..++++.+..++.
T Consensus 167 ~~~GSGKTevyl~~i~~~l~~Gk-----------~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w 233 (665)
T PRK14873 167 ALPGEDWARRLAAAAAATLRAGR-----------GALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRW 233 (665)
T ss_pred cCCCCcHHHHHHHHHHHHHHcCC-----------eEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHH
Confidence 34699999999998888887642 799999999999999999999885 25688899887655432
Q ss_pred ----hccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccc--ccCCchhHHHHHHHHHHHHhhccccccEEEEcc
Q 000129 595 ----IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL--HDNRGPVLESIVARTVRQIETTKEHIRLVGLSA 668 (2114)
Q Consensus 595 ----~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l--~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSA 668 (2114)
.+...|+|+| ++.-+..+.++++|||||-|-- .++++|.+.. |-+...+....++.+|+.||
T Consensus 234 ~~~~~G~~~IViGt---------RSAvFaP~~~LgLIIvdEEhd~sykq~~~p~yha---RdvA~~Ra~~~~~~lvLgSa 301 (665)
T PRK14873 234 LAVLRGQARVVVGT---------RSAVFAPVEDLGLVAIWDDGDDLLAEPRAPYPHA---REVALLRAHQHGCALLIGGH 301 (665)
T ss_pred HHHhCCCCcEEEEc---------ceeEEeccCCCCEEEEEcCCchhhcCCCCCCccH---HHHHHHHHHHcCCcEEEECC
Confidence 2467899999 4445677899999999999953 2345555432 21222233457899999999
Q ss_pred ccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccC----chhHHHHHhhHHHHHHHHHHhCCCeEEEEecChH
Q 000129 669 TLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVK----KPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRK 744 (2114)
Q Consensus 669 Tlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~ 744 (2114)
| |..+.......... ..+.......+...-..++++.... +....-..+...+++.+.+....+|+|||+|.|.
T Consensus 302 T-PSles~~~~~~g~~-~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~gqvll~lnRrG 379 (665)
T PRK14873 302 A-RTAEAQALVESGWA-HDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHGPVLVQVPRRG 379 (665)
T ss_pred C-CCHHHHHHHhcCcc-eeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcCcEEEEecCCC
Confidence 9 65544433221110 0000000001110111223322110 0000001144556677777776559999999999
Q ss_pred HHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhc---------ccCc--------------chhhhhccCceEEec
Q 000129 745 ETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTD---------MVKS--------------NDLKDLLPYGFAIHH 801 (2114)
Q Consensus 745 ~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~---------~~~~--------------~~L~~ll~~gv~~hH 801 (2114)
.+..+...=+.....+..+...+..+.......|..|. .|.. +.|+.+++ .
T Consensus 380 yap~l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP------~ 453 (665)
T PRK14873 380 YVPSLACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFP------G 453 (665)
T ss_pred CCCeeEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCC------C
Confidence 88776666565555555554444433222222233332 2222 22333333 1
Q ss_pred CCCCHHHHHHHHHHHhCCCceEEEech----HhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCC
Q 000129 802 AGMTRGDRQLVEDLFGDGHVQVLVSTA----TLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD 877 (2114)
Q Consensus 802 agl~~~~R~~v~~~F~~g~i~VLVaT~----tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d 877 (2114)
...-+.++..+.+.|. ++.+|||+|. .++ | ++ ..-+|++.+...+.+..+..+-...-++|-+|||||..
T Consensus 454 ~~V~r~d~d~~l~~~~-~~~~IlVGTqgaepm~~-g-~~-~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~-- 527 (665)
T PRK14873 454 VPVVTSGGDQVVDTVD-AGPALVVATPGAEPRVE-G-GY-GAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRA-- 527 (665)
T ss_pred CCEEEEChHHHHHhhc-cCCCEEEECCCCccccc-C-Cc-eEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCC--
Confidence 2222334556888997 5999999998 666 3 22 23345555555554555556667888999999999954
Q ss_pred CceEEEEEcC
Q 000129 878 SYGEGIIITG 887 (2114)
Q Consensus 878 ~~G~~iil~~ 887 (2114)
..|+++|.+.
T Consensus 528 ~~G~V~iq~~ 537 (665)
T PRK14873 528 DGGQVVVVAE 537 (665)
T ss_pred CCCEEEEEeC
Confidence 6799999863
No 245
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.57 E-value=5.6e-13 Score=177.72 Aligned_cols=124 Identities=18% Similarity=0.219 Sum_probs=101.7
Q ss_pred HHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCC
Q 000129 1563 TFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEG 1642 (2114)
Q Consensus 1563 ~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ 1642 (2114)
....+......+.++||||+|++.|+.++..|.. .+..+.++||+
T Consensus 435 L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~-----------------------------------~gi~~~~~h~~ 479 (652)
T PRK05298 435 LLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKE-----------------------------------LGIKVRYLHSD 479 (652)
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhh-----------------------------------cceeEEEEECC
Confidence 3445555556788999999999999999876632 23457889999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEE
Q 000129 1643 LNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCV 1722 (2114)
Q Consensus 1643 ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~i 1722 (2114)
++..+|..+++.|+.|.+.|||||+.+++|+|+|.+.+|| .++.. .+..|.+..+|+||+|||||. ..|.|+
T Consensus 480 ~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVi----i~d~e-ifG~~~~~~~yiqr~GR~gR~---~~G~~i 551 (652)
T PRK05298 480 IDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVA----ILDAD-KEGFLRSERSLIQTIGRAARN---VNGKVI 551 (652)
T ss_pred CCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEE----EeCCc-ccccCCCHHHHHHHhccccCC---CCCEEE
Confidence 9999999999999999999999999999999999999887 22221 344577899999999999994 589999
Q ss_pred EEeecCc
Q 000129 1723 ILCHAPR 1729 (2114)
Q Consensus 1723 il~~~~~ 1729 (2114)
+++....
T Consensus 552 ~~~~~~~ 558 (652)
T PRK05298 552 LYADKIT 558 (652)
T ss_pred EEecCCC
Confidence 9998543
No 246
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.56 E-value=3.8e-13 Score=177.61 Aligned_cols=115 Identities=19% Similarity=0.269 Sum_probs=96.0
Q ss_pred CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHH
Q 000129 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (2114)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~ 811 (2114)
.+.++||||+|++.++.++..|.+.+.. +.+.||+++..+|..
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~gi~-------------------------------------~~~lh~~~~~~eR~~ 483 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKELGIK-------------------------------------VRYLHSEIDTLERVE 483 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhhccc-------------------------------------eeeeeCCCCHHHHHH
Confidence 3679999999999999999999876432 456799999999999
Q ss_pred HHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcH
Q 000129 812 VEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891 (2114)
Q Consensus 812 v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~ 891 (2114)
+++.|+.|.++|||||+.+++|+|+|++.+||. +|....+ ..-+..+|+||+|||||. ..|.++++++..+.
T Consensus 484 ~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi----~DadifG-~p~~~~~~iqriGRagR~---~~G~vi~~~~~~~~ 555 (655)
T TIGR00631 484 IIRDLRLGEFDVLVGINLLREGLDLPEVSLVAI----LDADKEG-FLRSERSLIQTIGRAARN---VNGKVIMYADKITD 555 (655)
T ss_pred HHHHHhcCCceEEEEcChhcCCeeeCCCcEEEE----eCccccc-CCCCHHHHHHHhcCCCCC---CCCEEEEEEcCCCH
Confidence 999999999999999999999999999998887 4432110 112778999999999996 47999999887553
No 247
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.54 E-value=1.4e-12 Score=177.16 Aligned_cols=83 Identities=20% Similarity=0.330 Sum_probs=64.2
Q ss_pred CCCCCCCHHHHH---HHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHH
Q 000129 491 KGMTQLNRVQSR---VYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (2114)
Q Consensus 491 ~g~~~l~~iQ~~---~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~ 567 (2114)
.|| +.++-|.+ ++..++.++..+++.|+||+|||++|++|++.... +.++|+++||++|+.|+.
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~~------------~~~vvI~t~T~~Lq~Ql~ 308 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQSD------------QRQIIVSVPTKILQDQIM 308 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhcC------------CCcEEEEeCcHHHHHHHH
Confidence 565 68999998 55666777888999999999999999999887531 247999999999999995
Q ss_pred -HHHHHhhccCCcEEEEEeC
Q 000129 568 -GNLSNRLQMYDVKVRELSG 586 (2114)
Q Consensus 568 -~~~~~~~~~~gi~v~~l~G 586 (2114)
+.+..+.+.+++++..+.|
T Consensus 309 ~~~i~~l~~~~~~~~~~~kg 328 (820)
T PRK07246 309 AEEVKAIQEVFHIDCHSLKG 328 (820)
T ss_pred HHHHHHHHHhcCCcEEEEEC
Confidence 5555544445666665554
No 248
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.54 E-value=1.6e-12 Score=176.77 Aligned_cols=346 Identities=14% Similarity=0.174 Sum_probs=199.3
Q ss_pred CCCHHHHH---HHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHH-HHHHHHhcC
Q 000129 1341 HFNPIQTQ---VFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY-RDWEIKFGQ 1416 (2114)
Q Consensus 1341 ~~~~iQ~q---~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~-~~~~~~f~~ 1416 (2114)
++++-|.+ ++...+.++..+++.|+||+|||++|++|++... .+. ++|+++||++|+.|+. +++. .+++
T Consensus 245 e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~----~~~--~vvI~t~T~~Lq~Ql~~~~i~-~l~~ 317 (820)
T PRK07246 245 EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS----DQR--QIIVSVPTKILQDQIMAEEVK-AIQE 317 (820)
T ss_pred ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc----CCC--cEEEEeCcHHHHHHHHHHHHH-HHHH
Confidence 68999998 4445566778899999999999999999988643 123 8999999999999995 5555 5666
Q ss_pred CCCcEEEEEcCCccc------------------------------------c----------------------------
Q 000129 1417 GLGMRVVELTGETAM------------------------------------D---------------------------- 1432 (2114)
Q Consensus 1417 ~~g~~v~~l~G~~~~------------------------------------~---------------------------- 1432 (2114)
..++++..+.|.... |
T Consensus 318 ~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~cp 397 (820)
T PRK07246 318 VFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQSSL 397 (820)
T ss_pred hcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCCCC
Confidence 566666544331100 0
Q ss_pred ----------hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCC----CCch--HHHHHH-------
Q 000129 1433 ----------LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ----GGPV--LEVIVS------- 1489 (2114)
Q Consensus 1433 ----------~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~----~g~~--le~i~s------- 1489 (2114)
.+....++|||+.-.-+...+.. ...+...+.+||||||++.+. .+.. +..+..
T Consensus 398 ~~~~cf~~~ar~~a~~AdivItNHall~~~~~~---~~~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 474 (820)
T PRK07246 398 FYDYDFWKRSYEKAKTARLLITNHAYFLTRVQD---DKDFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKALS 474 (820)
T ss_pred cchhhHHHHHHHHHHhCCEEEEchHHHHHHHhh---ccCCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHHH
Confidence 00123458888887765543322 234667899999999987531 1110 000000
Q ss_pred -------------------------------------------HHHHHH-----------hh------------------
Q 000129 1490 -------------------------------------------RMRYIA-----------SQ------------------ 1497 (2114)
Q Consensus 1490 -------------------------------------------rl~~i~-----------~~------------------ 1497 (2114)
.+..+. ..
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~~ 554 (820)
T PRK07246 475 GPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRVT 554 (820)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCccee
Confidence 000000 00
Q ss_pred ---------------cCCCceEEEEcccCC--ChhHHHHHhcCCCCceeecCCCCCccCcEEEEe-cccccch--HHHHH
Q 000129 1498 ---------------VENKIRIVALSTSLA--NAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQ-GVDITNF--EARMQ 1557 (2114)
Q Consensus 1498 ---------------~~~~~riV~lSATl~--n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~-~~~~~~~--~~~~~ 1557 (2114)
++....+|++|||++ +..++.+.+|.........+..+... ..+.+. ..+.... ....
T Consensus 555 ~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~~~~~lGl~~~~~~~~~~~~~~~-~~~~i~~~~p~~~~~~~~~~- 632 (820)
T PRK07246 555 YLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVSLADLLGFEEYLFHKIEKDKKQD-QLVVVDQDMPLVTETSDEVY- 632 (820)
T ss_pred EEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCcHHHHcCCCccceecCCCChHHc-cEEEeCCCCCCCCCCChHHH-
Confidence 011246799999995 22357888886532222221111111 111111 1221110 0111
Q ss_pred hcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceE
Q 000129 1558 AMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637 (2114)
Q Consensus 1558 ~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~ 1637 (2114)
.......+......+++++|+++|.+..+.++..|... ...+
T Consensus 633 --~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~-----------------------------------~~~~- 674 (820)
T PRK07246 633 --AEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQW-----------------------------------QVSH- 674 (820)
T ss_pred --HHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhc-----------------------------------CCcE-
Confidence 11122222222245789999999999988887655210 0112
Q ss_pred eecC-CCCHHHHHHHHHHHhcCCceEEEecCccccccCCCC---cEEEEEeeeEecC----------------Cc---Cc
Q 000129 1638 YLHE-GLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTA---HLVVVMGTQYYDG----------------QE---NA 1694 (2114)
Q Consensus 1638 ~~H~-~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~---~~vVI~gt~~yd~----------------~~---~~ 1694 (2114)
+..| +. .|..+.+.|+++.-.||++|..+.+|||+|+ ..+||.+.++-.+ +. .+
T Consensus 675 l~Qg~~~---~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~ 751 (820)
T PRK07246 675 LAQEKNG---TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDY 751 (820)
T ss_pred EEeCCCc---cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhe
Confidence 2222 22 2456889999998999999999999999973 4456655544322 11 11
Q ss_pred CCCCCHhHHHHhHcccCCCCCCCceEEEEEeecC-cHHHHHHHHHhc
Q 000129 1695 HTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP-RKEYYKKFLRLT 1740 (2114)
Q Consensus 1695 ~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~-~~~~~~~~lRl~ 1740 (2114)
..|.-+..+.|-+||.-|.. +..|.++++=..- .+.|-+.|++.+
T Consensus 752 ~lP~A~iklkQg~GRLIRs~-~D~Gvv~ilD~R~~~k~Yg~~~l~sL 797 (820)
T PRK07246 752 FLPMTILRLKQAIGRTMRRE-DQKSAVLILDRRILTKSYGKQILASL 797 (820)
T ss_pred eHHHHHHHHHHHhcccccCC-CCcEEEEEECCcccccHHHHHHHHhC
Confidence 12333567889999999974 5678666554432 344556666443
No 249
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.53 E-value=2e-13 Score=156.43 Aligned_cols=171 Identities=22% Similarity=0.265 Sum_probs=124.5
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
++..+++.|.+++..++++..++++++|||||||.++..++++.+... ... +++|++|+++++.|+...+...+...
T Consensus 5 ~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~-~~~--~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 5 GFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRG-KGK--RVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhccc-CCC--cEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 367899999999999987646799999999999999999999888762 233 89999999999999999998655432
Q ss_pred CCcEEEEEcCCccc-chh-hccCC-cEEEEChhhHHHHHhhhcccccccceeEEEecccccccC-CCCchHHHHHHHHHH
Q 000129 1418 LGMRVVELTGETAM-DLK-LLEKG-QIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRY 1493 (2114)
Q Consensus 1418 ~g~~v~~l~G~~~~-~~~-~l~~~-~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~-~~g~~le~i~srl~~ 1493 (2114)
.+.....+.+.... ... ..... +++++|++.+........ .....++++|+||+|.+.. .... .+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~--~~~~~~~~iIiDE~h~~~~~~~~~-------~~~~ 152 (201)
T smart00487 82 GLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL--LELSNVDLVILDEAHRLLDGGFGD-------QLEK 152 (201)
T ss_pred CeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC--cCHhHCCEEEEECHHHHhcCCcHH-------HHHH
Confidence 12445555554422 222 22333 999999999888777632 3567889999999999875 3222 2222
Q ss_pred HHhhcCCCceEEEEcccCCChhHHHHH
Q 000129 1494 IASQVENKIRIVALSTSLANAKDLGEW 1520 (2114)
Q Consensus 1494 i~~~~~~~~riV~lSATl~n~~dla~w 1520 (2114)
+........+++++|||+++..+...+
T Consensus 153 ~~~~~~~~~~~v~~saT~~~~~~~~~~ 179 (201)
T smart00487 153 LLKLLPKNVQLLLLSATPPEEIENLLE 179 (201)
T ss_pred HHHhCCccceEEEEecCCchhHHHHHH
Confidence 323335688999999999865444333
No 250
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.53 E-value=4.1e-13 Score=161.56 Aligned_cols=278 Identities=21% Similarity=0.266 Sum_probs=180.4
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchh-hc
Q 000129 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK-LL 1436 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~-~l 1436 (2114)
+-++-+|||.||||.-| |+++.. .+ +.+|--|.|-||.++++++.+ .|+.+..+||+...... .-
T Consensus 192 kIi~H~GPTNSGKTy~A----Lqrl~~---ak--sGvycGPLrLLA~EV~~r~na-----~gipCdL~TGeE~~~~~~~~ 257 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYRA----LQRLKS---AK--SGVYCGPLRLLAHEVYDRLNA-----LGIPCDLLTGEERRFVLDNG 257 (700)
T ss_pred eEEEEeCCCCCchhHHH----HHHHhh---hc--cceecchHHHHHHHHHHHhhh-----cCCCccccccceeeecCCCC
Confidence 33667899999999655 566665 23 569999999999999998773 37889999997654321 12
Q ss_pred cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC-CCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCChh
Q 000129 1437 EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAK 1515 (2114)
Q Consensus 1437 ~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~-~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~ 1515 (2114)
..+..+=||-|+.. .-..+++.||||++++.+ .||..|...+--+. ...+.+.|=-|-++=.+
T Consensus 258 ~~a~hvScTVEM~s----------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~------AdEiHLCGepsvldlV~ 321 (700)
T KOG0953|consen 258 NPAQHVSCTVEMVS----------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLA------ADEIHLCGEPSVLDLVR 321 (700)
T ss_pred CcccceEEEEEEee----------cCCceEEEEehhHHhhcCcccchHHHHHHHhhh------hhhhhccCCchHHHHHH
Confidence 24578888888632 124579999999999987 57776644332221 12333333222222122
Q ss_pred HHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHH
Q 000129 1516 DLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLM 1595 (2114)
Q Consensus 1516 dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~ 1595 (2114)
++.+-.|.. +......|-.|+.+. ......+ .. -..+.++| |=|++....+...+
T Consensus 322 ~i~k~TGd~----vev~~YeRl~pL~v~-----------------~~~~~sl-~n-lk~GDCvV-~FSkk~I~~~k~kI- 376 (700)
T KOG0953|consen 322 KILKMTGDD----VEVREYERLSPLVVE-----------------ETALGSL-SN-LKPGDCVV-AFSKKDIFTVKKKI- 376 (700)
T ss_pred HHHhhcCCe----eEEEeecccCcceeh-----------------hhhhhhh-cc-CCCCCeEE-EeehhhHHHHHHHH-
Confidence 222222221 111112222232211 1111111 11 12344444 44566665554433
Q ss_pred HhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhc--CCceEEEecCcccccc
Q 000129 1596 TYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA--GKIKVCVMSSSMCWGV 1673 (2114)
Q Consensus 1596 ~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~--g~i~VLVaT~~la~Gv 1673 (2114)
.....+.+++++|+|+++.|..--.+|.+ +..+|||||+...+|+
T Consensus 377 ---------------------------------E~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGL 423 (700)
T KOG0953|consen 377 ---------------------------------EKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGL 423 (700)
T ss_pred ---------------------------------HHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccc
Confidence 12234568999999999999999999987 8999999999999999
Q ss_pred CCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCC-CceEEEEEe
Q 000129 1674 PLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLD-NSGKCVILC 1725 (2114)
Q Consensus 1674 dip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~-~~G~~iil~ 1725 (2114)
|+.-.++|......|+|++- .+++..+..|.+|||||-|.. ..|.+..|.
T Consensus 424 NL~IrRiiF~sl~Kysg~e~--~~it~sqikQIAGRAGRf~s~~~~G~vTtl~ 474 (700)
T KOG0953|consen 424 NLNIRRIIFYSLIKYSGRET--EDITVSQIKQIAGRAGRFGSKYPQGEVTTLH 474 (700)
T ss_pred ccceeEEEEeecccCCcccc--eeccHHHHHHHhhcccccccCCcCceEEEee
Confidence 99999999988899998864 678899999999999997533 246555554
No 251
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.53 E-value=9.3e-13 Score=172.31 Aligned_cols=126 Identities=17% Similarity=0.116 Sum_probs=88.5
Q ss_pred CCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhc
Q 000129 496 LNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ 575 (2114)
Q Consensus 496 l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~ 575 (2114)
++++|--.-- +++.+ -|.-..||-|||+++.||+.-....++ -|-+|+..--||.-=.+.+...+.
T Consensus 139 ~ydVQLiGgi-vLh~G--~IAEM~TGEGKTLvatlp~yLnAL~G~-----------gVHvVTvNDYLA~RDaewm~p~y~ 204 (1025)
T PRK12900 139 PYDVQLIGGI-VLHSG--KISEMATGEGKTLVSTLPTFLNALTGR-----------GVHVVTVNDYLAQRDKEWMNPVFE 204 (1025)
T ss_pred ccchHHhhhH-HhhcC--CccccCCCCCcchHhHHHHHHHHHcCC-----------CcEEEeechHhhhhhHHHHHHHHH
Confidence 4556654433 33443 378899999999999999876665542 255666777788888888888888
Q ss_pred cCCcEEEEEeCCCccChh-hhccceEEEcCHhHH--HHHHhccC---CCcccccccEEEEeccccc
Q 000129 576 MYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 576 ~~gi~v~~l~Gd~~~~~~-~~~~~~IiV~TPek~--d~l~r~~~---~~~~l~~v~liIiDEaH~l 635 (2114)
.+|++|+....+.+...+ ..-.++|+++|.--+ |.|.-+.. .........+.||||||.+
T Consensus 205 flGLtVg~i~~~~~~~~Rr~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSv 270 (1025)
T PRK12900 205 FHGLSVGVILNTMRPEERREQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSV 270 (1025)
T ss_pred HhCCeeeeeCCCCCHHHHHHhCCCcceecCCCccccccchhccccchhhhhccCCceEEEechhhh
Confidence 999999998776554433 345899999998764 54433321 1234466789999999965
No 252
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.51 E-value=3.1e-14 Score=167.92 Aligned_cols=367 Identities=18% Similarity=0.203 Sum_probs=217.5
Q ss_pred ccCCCCCcccccCcceEEecCCCCCCCCCCCCCccccCCCChhhHhhcCCCCCCCHHHHHHHHHHHcCCC--cEEEEccC
Q 000129 443 CDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSAD--NILLCAPT 520 (2114)
Q Consensus 443 ~~lp~~s~~~~~~~~eei~vp~~~~~~~~~~~~l~~i~~lp~~~~~~f~g~~~l~~iQ~~~i~~~l~~~~--nvlv~APT 520 (2114)
+.+.+.+....+|.+-|+.+|-....+|..+..... |+- -++.-..++|+|.+.+...+.++. .-+|+.|.
T Consensus 257 fei~~e~vE~vkkRCieidyPlLeEYDFRND~~npd---l~i----dLKPst~iRpYQEksL~KMFGNgRARSGiIVLPC 329 (776)
T KOG1123|consen 257 FEIKQESVETVKKRCIEIDYPLLEEYDFRNDNVNPD---LDI----DLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPC 329 (776)
T ss_pred eeecHHHHHHHHHhhhccCchhhhhhccccCCCCCC---CCc----CcCcccccCchHHHHHHHHhCCCcccCceEEEec
Confidence 556666666778888889999877666654332111 110 112346899999999999987653 57888999
Q ss_pred CCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhhhccceE
Q 000129 521 GAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQI 600 (2114)
Q Consensus 521 GsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~I 600 (2114)
|+|||++..-++.. + +..+|+++..---+.|+...|..+..--.-.++.+|.|.... ...++.|
T Consensus 330 GAGKtLVGvTAa~t-i-------------kK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFTsd~Ke~--~~~~~gv 393 (776)
T KOG1123|consen 330 GAGKTLVGVTAACT-I-------------KKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFTSDAKER--FPSGAGV 393 (776)
T ss_pred CCCCceeeeeeeee-e-------------cccEEEEecCccCHHHHHHHHHhhcccCccceEEeecccccc--CCCCCcE
Confidence 99999987655432 2 126899999988899999998876543345678888876432 2357889
Q ss_pred EEcCHhHHHHHHhccC------CCcccccccEEEEeccccccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCCh
Q 000129 601 IVTTPEKWDIITRKSG------DRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY 673 (2114)
Q Consensus 601 iV~TPek~d~l~r~~~------~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~ 673 (2114)
+|+|.-++..-.+++. +...-+..+++++||+|.+.. .++.++..+-+ .++ +||+|||-..
T Consensus 394 vvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~a-----------HcK-LGLTATLvRE 461 (776)
T KOG1123|consen 394 VVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQA-----------HCK-LGLTATLVRE 461 (776)
T ss_pred EEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHH-----------Hhh-ccceeEEeec
Confidence 9999875422211111 111224468999999998764 33333332222 233 8999998532
Q ss_pred HH--------------HHHHHhccccCceEeecCCcccccceeEEEeeccCc-hhHH--HHHhhHH----HHHHHHHHh-
Q 000129 674 ED--------------VALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKK-PLQR--FQLMNDL----CYEKVVAVA- 731 (2114)
Q Consensus 674 ~d--------------va~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~-~~~~--~~~~~~~----~~~~i~~~~- 731 (2114)
+| -++|+.......+-.......-+|....|+...... ..++ +..||.. |--.+.-+.
T Consensus 462 DdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~HE~ 541 (776)
T KOG1123|consen 462 DDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQFLIKFHER 541 (776)
T ss_pred cccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHHHHHHHHHh
Confidence 22 134443321111111111111222222211100000 0011 1112211 111111222
Q ss_pred CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHH
Q 000129 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (2114)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~ 811 (2114)
.+.++|||..+.-.-...|-.| |=.+.+|..++.+|..
T Consensus 542 RgDKiIVFsDnvfALk~YAikl------------------------------------------~KpfIYG~Tsq~ERm~ 579 (776)
T KOG1123|consen 542 RGDKIIVFSDNVFALKEYAIKL------------------------------------------GKPFIYGPTSQNERMK 579 (776)
T ss_pred cCCeEEEEeccHHHHHHHHHHc------------------------------------------CCceEECCCchhHHHH
Confidence 3668999987765443333322 2235699999999999
Q ss_pred HHHHHh-CCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCC--CC--ceEEEEEc
Q 000129 812 VEDLFG-DGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY--DS--YGEGIIIT 886 (2114)
Q Consensus 812 v~~~F~-~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~--d~--~G~~iil~ 886 (2114)
+++.|+ +..++.++-.-+....+|+|..+|+|.-...+ | |..+=.||.||.-|+-. |. ...-|-++
T Consensus 580 ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~----G-----SRRQEAQRLGRILRAKk~~de~fnafFYSLV 650 (776)
T KOG1123|consen 580 ILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHG----G-----SRRQEAQRLGRILRAKKRNDEEFNAFFYSLV 650 (776)
T ss_pred HHHhcccCCccceEEEeeccCccccCCcccEEEEEcccc----c-----chHHHHHHHHHHHHHhhcCccccceeeeeee
Confidence 999998 56788899999999999999999999743333 2 56688999998777521 11 12334455
Q ss_pred CCCcHHHHH
Q 000129 887 GHSELRYYL 895 (2114)
Q Consensus 887 ~~~e~~~~~ 895 (2114)
+.+..+.|.
T Consensus 651 S~DTqEM~Y 659 (776)
T KOG1123|consen 651 SKDTQEMYY 659 (776)
T ss_pred ecchHHHHh
Confidence 555444443
No 253
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.50 E-value=2.7e-13 Score=155.27 Aligned_cols=164 Identities=27% Similarity=0.355 Sum_probs=120.8
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
++.+++++|.+++..++....++++++|||+|||.++..++++.+.... ..+++|++|+++++.|+...+.
T Consensus 5 ~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~---------~~~~l~~~p~~~~~~~~~~~~~ 75 (201)
T smart00487 5 GFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK---------GKRVLVLVPTRELAEQWAEELK 75 (201)
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC---------CCcEEEEeCCHHHHHHHHHHHH
Confidence 5678999999999998876467999999999999999999998876542 2379999999999999999999
Q ss_pred HhhccCC-cEEEEEeCCCccCh--hhhccc-eEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-CCchhHHHH
Q 000129 572 NRLQMYD-VKVRELSGDQTLTR--QQIEET-QIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESI 646 (2114)
Q Consensus 572 ~~~~~~g-i~v~~l~Gd~~~~~--~~~~~~-~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~i 646 (2114)
..+.... .....+.|...... ...... +++++|++.+........ .....++++|+||+|.+.. .+...+..+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~--~~~~~~~~iIiDE~h~~~~~~~~~~~~~~ 153 (201)
T smart00487 76 KLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL--LELSNVDLVILDEAHRLLDGGFGDQLEKL 153 (201)
T ss_pred HHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC--cCHhHCCEEEEECHHHHhcCCcHHHHHHH
Confidence 8776544 44444544432111 112233 999999998754444432 3456789999999999876 555544444
Q ss_pred HHHHHHHHhhccccccEEEEccccCCh
Q 000129 647 VARTVRQIETTKEHIRLVGLSATLPNY 673 (2114)
Q Consensus 647 v~rl~~~~~~~~~~~riv~lSATlpn~ 673 (2114)
+.. .....+++++|||.++.
T Consensus 154 ~~~-------~~~~~~~v~~saT~~~~ 173 (201)
T smart00487 154 LKL-------LPKNVQLLLLSATPPEE 173 (201)
T ss_pred HHh-------CCccceEEEEecCCchh
Confidence 432 25678999999997743
No 254
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.50 E-value=2.5e-12 Score=154.81 Aligned_cols=170 Identities=21% Similarity=0.293 Sum_probs=119.7
Q ss_pred cccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHH-HhCCCeEEE
Q 000129 660 HIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLI 738 (2114)
Q Consensus 660 ~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~vLV 738 (2114)
..|+|..|||..++ ++..- +-.+...-.||..|---.+.+... .... .++ +..+.. ...+.++||
T Consensus 386 ~~q~i~VSATPg~~-E~e~s-------~~~vveQiIRPTGLlDP~ievRp~--~~Qv---dDL-~~EI~~r~~~~eRvLV 451 (663)
T COG0556 386 IPQTIYVSATPGDY-ELEQS-------GGNVVEQIIRPTGLLDPEIEVRPT--KGQV---DDL-LSEIRKRVAKNERVLV 451 (663)
T ss_pred cCCEEEEECCCChH-HHHhc-------cCceeEEeecCCCCCCCceeeecC--CCcH---HHH-HHHHHHHHhcCCeEEE
Confidence 56899999994433 33211 111233445665543322222221 1122 222 222333 344789999
Q ss_pred EecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhC
Q 000129 739 FVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGD 818 (2114)
Q Consensus 739 Fv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~ 818 (2114)
-+-|++-|+.+..+|.+.+.. +.+.|+....-+|..++..++.
T Consensus 452 TtLTKkmAEdLT~Yl~e~gik-------------------------------------v~YlHSdidTlER~eIirdLR~ 494 (663)
T COG0556 452 TTLTKKMAEDLTEYLKELGIK-------------------------------------VRYLHSDIDTLERVEIIRDLRL 494 (663)
T ss_pred EeehHHHHHHHHHHHHhcCce-------------------------------------EEeeeccchHHHHHHHHHHHhc
Confidence 999999999999999887643 5677999999999999999999
Q ss_pred CCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCC
Q 000129 819 GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2114)
Q Consensus 819 g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2114)
|.++|||.-+.|-.|+|+|.|.+|.- .|..+-++ --|-.+++|-+|||.|. -.|++|++.+.
T Consensus 495 G~~DvLVGINLLREGLDiPEVsLVAI----lDADKeGF-LRse~SLIQtIGRAARN---~~GkvIlYAD~ 556 (663)
T COG0556 495 GEFDVLVGINLLREGLDLPEVSLVAI----LDADKEGF-LRSERSLIQTIGRAARN---VNGKVILYADK 556 (663)
T ss_pred CCccEEEeehhhhccCCCcceeEEEE----eecCcccc-ccccchHHHHHHHHhhc---cCCeEEEEchh
Confidence 99999999999999999999998764 55543221 23777899999999994 57998888764
No 255
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.49 E-value=3e-12 Score=170.87 Aligned_cols=113 Identities=18% Similarity=0.272 Sum_probs=94.8
Q ss_pred CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHH
Q 000129 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (2114)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~ 811 (2114)
.+.++||||+|++.++.++..|.+.+. .+.++||+++..+|..
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~gi-------------------------------------~~~~~h~~~~~~~R~~ 487 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKELGI-------------------------------------KVRYLHSDIDTLERVE 487 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcce-------------------------------------eEEEEECCCCHHHHHH
Confidence 367999999999999999999876542 2566799999999999
Q ss_pred HHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCC
Q 000129 812 VEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889 (2114)
Q Consensus 812 v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~ 889 (2114)
+++.|+.|.+.|||||+.+++|+|+|++.+||. +|.+..+ -.-+..+|+||+|||||. ..|.++++++..
T Consensus 488 ~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii----~d~eifG-~~~~~~~yiqr~GR~gR~---~~G~~i~~~~~~ 557 (652)
T PRK05298 488 IIRDLRLGEFDVLVGINLLREGLDIPEVSLVAI----LDADKEG-FLRSERSLIQTIGRAARN---VNGKVILYADKI 557 (652)
T ss_pred HHHHHHcCCceEEEEeCHHhCCccccCCcEEEE----eCCcccc-cCCCHHHHHHHhccccCC---CCCEEEEEecCC
Confidence 999999999999999999999999999999887 4432111 112778999999999994 579999999854
No 256
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.49 E-value=1.4e-11 Score=170.93 Aligned_cols=135 Identities=19% Similarity=0.327 Sum_probs=91.2
Q ss_pred CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHH
Q 000129 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (2114)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v 812 (2114)
++++|||++|.+.-+.++..|....... ++.+.-=|++...|..+
T Consensus 752 ~g~~LVLFtSy~~l~~v~~~l~~~~~~~-----------------------------------~~~ll~Qg~~~~~r~~l 796 (928)
T PRK08074 752 KGRMLVLFTSYEMLKKTYYNLKNEEELE-----------------------------------GYVLLAQGVSSGSRARL 796 (928)
T ss_pred CCCEEEEECCHHHHHHHHHHHhhccccc-----------------------------------CceEEecCCCCCCHHHH
Confidence 6789999999999999998886532110 11111124444567889
Q ss_pred HHHHhCCCceEEEechHhhhhcCCCce--EEEEecceeccCCCC----------------ccccC----CHHHHHHhhcc
Q 000129 813 EDLFGDGHVQVLVSTATLAWGVNLPAH--TVIIKGTQIYNPEKG----------------AWTEL----SPLDIMQMLGR 870 (2114)
Q Consensus 813 ~~~F~~g~i~VLVaT~tla~GVdlP~v--~vVI~~~~~yd~~~g----------------~~~~~----s~~~~~Qr~GR 870 (2114)
.+.|+.+.-.||++|..+..|||+|+- ..||-...||.++.. .|.++ ....+.|-+||
T Consensus 797 ~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GR 876 (928)
T PRK08074 797 TKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGR 876 (928)
T ss_pred HHHHHhcCCeEEEecCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhh
Confidence 999999888999999999999999974 555555667764431 12333 35677999999
Q ss_pred cCCCCCCCceEEEEEcCCCcHHHHHHhhcCCCc
Q 000129 871 AGRPQYDSYGEGIIITGHSELRYYLSLMNQQLP 903 (2114)
Q Consensus 871 AGR~g~d~~G~~iil~~~~e~~~~~~ll~~~~p 903 (2114)
.=|... ..|..+++-..-....|-+.+-..+|
T Consensus 877 lIRs~~-D~G~v~ilD~R~~~k~Yg~~~l~sLP 908 (928)
T PRK08074 877 LIRTET-DRGTVFVLDRRLTTTSYGKYFLESLP 908 (928)
T ss_pred hcccCC-ceEEEEEecCccccchHHHHHHHhCC
Confidence 999754 46766665544344455554444455
No 257
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.49 E-value=1.5e-12 Score=166.91 Aligned_cols=282 Identities=21% Similarity=0.262 Sum_probs=172.3
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
|+ .|...|.-....++.+.. .-+.||||.|||.-.++..+-...++ .+++||+||..|+.|.+++++
T Consensus 80 G~-~~ws~QR~WakR~~rg~S-FaiiAPTGvGKTTfg~~~sl~~a~kg-----------kr~yii~PT~~Lv~Q~~~kl~ 146 (1187)
T COG1110 80 GF-RPWSAQRVWAKRLVRGKS-FAIIAPTGVGKTTFGLLMSLYLAKKG-----------KRVYIIVPTTTLVRQVYERLK 146 (1187)
T ss_pred CC-CchHHHHHHHHHHHcCCc-eEEEcCCCCchhHHHHHHHHHHHhcC-----------CeEEEEecCHHHHHHHHHHHH
Confidence 44 899999999999887755 99999999999987666555444332 389999999999999999999
Q ss_pred HhhccCC-cEEEE-EeCCCccChh-------hhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-CC--
Q 000129 572 NRLQMYD-VKVRE-LSGDQTLTRQ-------QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NR-- 639 (2114)
Q Consensus 572 ~~~~~~g-i~v~~-l~Gd~~~~~~-------~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~r-- 639 (2114)
++....| ..+.. ++|..+.... ..++.+|+|+|.. .+.++...... -++++|++|.+|.+.- .+
T Consensus 147 ~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~---FL~k~~e~L~~-~kFdfifVDDVDA~LkaskNv 222 (1187)
T COG1110 147 KFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQ---FLSKRFEELSK-LKFDFIFVDDVDAILKASKNV 222 (1187)
T ss_pred HHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHH---HHHhhHHHhcc-cCCCEEEEccHHHHHhccccH
Confidence 8775444 33333 5665443321 1247899999987 33333211111 3579999999996632 11
Q ss_pred -------c---hhHHHH--HHHHHHHHh---------------------hccccccEEEEccccCChH----HHHHHHhc
Q 000129 640 -------G---PVLESI--VARTVRQIE---------------------TTKEHIRLVGLSATLPNYE----DVALFLRV 682 (2114)
Q Consensus 640 -------g---~~le~i--v~rl~~~~~---------------------~~~~~~riv~lSATlpn~~----dva~~l~~ 682 (2114)
| .+++.. +.++.+... ......++|..|||..... -+...|+.
T Consensus 223 DriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgF 302 (1187)
T COG1110 223 DRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGF 302 (1187)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCC
Confidence 1 111100 011111100 1123467899999975433 23333332
Q ss_pred cccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecC---hHHHHHHHHHHHHHhhc
Q 000129 683 NLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHS---RKETAKTARAIRDTALE 759 (2114)
Q Consensus 683 ~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~s---r~~~~~~a~~L~~~~~~ 759 (2114)
. .......+...+-.+....... .+.+ +.+.. +.-.||||+. +..++.++..|++.+++
T Consensus 303 e---------vG~~~~~LRNIvD~y~~~~~~e-------~~~e-lvk~l-G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~ 364 (1187)
T COG1110 303 E---------VGSGGEGLRNIVDIYVESESLE-------KVVE-LVKKL-GDGGLIFVPIDYGREKAEELAEYLRSHGIN 364 (1187)
T ss_pred c---------cCccchhhhheeeeeccCccHH-------HHHH-HHHHh-CCCeEEEEEcHHhHHHHHHHHHHHHhcCce
Confidence 2 2211222221111111111111 1112 22223 4468999999 88899999999887755
Q ss_pred ccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEech----HhhhhcC
Q 000129 760 NDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTA----TLAWGVN 835 (2114)
Q Consensus 760 ~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~----tla~GVd 835 (2114)
.. ..|++ ....++.|..|+++|||..+ ++-||+|
T Consensus 365 a~-------------------------------------~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlD 402 (1187)
T COG1110 365 AE-------------------------------------LIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLD 402 (1187)
T ss_pred EE-------------------------------------Eeecc-----chhhhhhhccCceeEEEEecccccceeecCC
Confidence 42 33653 36778999999999999864 7999999
Q ss_pred CCceEEEEecceeccCCC
Q 000129 836 LPAHTVIIKGTQIYNPEK 853 (2114)
Q Consensus 836 lP~v~vVI~~~~~yd~~~ 853 (2114)
+|.. |++...|..|+
T Consensus 403 LP~r---irYaIF~GvPk 417 (1187)
T COG1110 403 LPHR---IRYAVFYGVPK 417 (1187)
T ss_pred chhh---eeEEEEecCCc
Confidence 9974 33334477665
No 258
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.47 E-value=7.8e-12 Score=150.59 Aligned_cols=160 Identities=18% Similarity=0.263 Sum_probs=115.0
Q ss_pred HHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecC
Q 000129 1562 PTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHE 1641 (2114)
Q Consensus 1562 ~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~ 1641 (2114)
.++..|......+.++||-+-|++.|+.+...|.. .+..+.++|+
T Consensus 434 DL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e-----------------------------------~gikv~YlHS 478 (663)
T COG0556 434 DLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKE-----------------------------------LGIKVRYLHS 478 (663)
T ss_pred HHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHh-----------------------------------cCceEEeeec
Confidence 44566666667889999999999988877765532 3456899999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEE
Q 000129 1642 GLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKC 1721 (2114)
Q Consensus 1642 ~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~ 1721 (2114)
++..-+|..++...+.|.++|||.-+.+-.|+|+|.+.+|. -.|.. .-.+..|-.+++|-+|||.| ...|++
T Consensus 479 didTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVA----IlDAD-KeGFLRse~SLIQtIGRAAR---N~~Gkv 550 (663)
T COG0556 479 DIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVA----ILDAD-KEGFLRSERSLIQTIGRAAR---NVNGKV 550 (663)
T ss_pred cchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEE----EeecC-ccccccccchHHHHHHHHhh---ccCCeE
Confidence 99999999999999999999999999999999999998875 12222 22345678899999999999 579999
Q ss_pred EEEeecCcHHHHHHHH-----HhccCCCCccccCCCccchHHHHHHHHH
Q 000129 1722 VILCHAPRKEYYKKFL-----RLTQNPNYYNLQGVSHRHLSDHLSELVE 1765 (2114)
Q Consensus 1722 iil~~~~~~~~~~~~l-----Rl~~nP~~y~l~~~s~~~l~~~lselve 1765 (2114)
+++...-. +.+++.+ |-...-.|-.-.++++..+...+.+++.
T Consensus 551 IlYAD~iT-~sM~~Ai~ET~RRR~iQ~~yN~~hgItP~ti~K~i~d~l~ 598 (663)
T COG0556 551 ILYADKIT-DSMQKAIDETERRREIQMAYNEEHGITPQTIKKKIRDILD 598 (663)
T ss_pred EEEchhhh-HHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhhh
Confidence 88775433 3344444 1111112223345566655554444433
No 259
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.46 E-value=1.1e-11 Score=158.57 Aligned_cols=127 Identities=13% Similarity=0.071 Sum_probs=99.8
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.++++|.-..-.++.| -|....||+|||+++.+|+......+ ..+-+++|+--||.+-++.+..++
T Consensus 78 r~ydvQlig~l~Ll~G---~VaEM~TGEGKTLvA~l~a~l~AL~G-----------~~VhvvT~NdyLA~RDae~m~~ly 143 (764)
T PRK12326 78 RPFDVQLLGALRLLAG---DVIEMATGEGKTLAGAIAAAGYALQG-----------RRVHVITVNDYLARRDAEWMGPLY 143 (764)
T ss_pred CcchHHHHHHHHHhCC---CcccccCCCCHHHHHHHHHHHHHHcC-----------CCeEEEcCCHHHHHHHHHHHHHHH
Confidence 6788998888766654 37789999999999999988776654 268999999999999999999999
Q ss_pred ccCCcEEEEEeCCCccCh-hhhccceEEEcCHhHH--HHHHhccC---CCcccccccEEEEeccccc
Q 000129 575 QMYDVKVRELSGDQTLTR-QQIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~-~~~~~~~IiV~TPek~--d~l~r~~~---~~~~l~~v~liIiDEaH~l 635 (2114)
..+|++|+.++++.+... +..-.++|+++|..-+ |.|.-+.. +......+.+.||||||.+
T Consensus 144 ~~LGLsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSi 210 (764)
T PRK12326 144 EALGLTVGWITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSV 210 (764)
T ss_pred HhcCCEEEEECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhh
Confidence 999999999999876543 3345799999999874 44433321 1223455789999999965
No 260
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.41 E-value=2.4e-11 Score=159.13 Aligned_cols=127 Identities=17% Similarity=0.149 Sum_probs=97.2
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.++++|--.--. ++.+ -|....||+|||+++.+|++.....+ ..+-+++|+.-||.+-++.+..++
T Consensus 82 ~~ydVQliGg~~-Lh~G--~iaEM~TGEGKTLvA~l~a~l~al~G-----------~~VhvvT~ndyLA~RD~e~m~~l~ 147 (913)
T PRK13103 82 RHFDVQLIGGMT-LHEG--KIAEMRTGEGKTLVGTLAVYLNALSG-----------KGVHVVTVNDYLARRDANWMRPLY 147 (913)
T ss_pred CcchhHHHhhhH-hccC--ccccccCCCCChHHHHHHHHHHHHcC-----------CCEEEEeCCHHHHHHHHHHHHHHh
Confidence 456777655433 3333 58889999999999999998776654 268899999999999999999999
Q ss_pred ccCCcEEEEEeCCCccChh-hhccceEEEcCHhHH--HHHHhccC---CCcccccccEEEEeccccc
Q 000129 575 QMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~-~~~~~~IiV~TPek~--d~l~r~~~---~~~~l~~v~liIiDEaH~l 635 (2114)
..+|++|+.++|+.+...+ ..-.++|+++|..-+ |.|..... .......+.++||||+|.+
T Consensus 148 ~~lGl~v~~i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsi 214 (913)
T PRK13103 148 EFLGLSVGIVTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSI 214 (913)
T ss_pred cccCCEEEEECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhhe
Confidence 9999999999998765432 345699999999874 54443321 1234477899999999976
No 261
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.36 E-value=1.9e-12 Score=161.99 Aligned_cols=409 Identities=16% Similarity=0.145 Sum_probs=255.8
Q ss_pred HHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCc
Q 000129 1350 FTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGET 1429 (2114)
Q Consensus 1350 ~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~ 1429 (2114)
+..+...++.++|-+.||+|||..++..||..+..........+++..|++..+..+++++.+.-+...|-.| |-.
T Consensus 386 i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tv----gy~ 461 (1282)
T KOG0921|consen 386 ILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETC----GYN 461 (1282)
T ss_pred HHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccc----ccc
Confidence 3344455777999999999999999999999999866555567889999999999999888765544333333 221
Q ss_pred ccchhhc--cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEE
Q 000129 1430 AMDLKLL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVAL 1507 (2114)
Q Consensus 1430 ~~~~~~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~l 1507 (2114)
..-.... ..+-|..||-+-+...+-. -+..+.++|+||+|...- .+..+..++..|..+ -+.++++++
T Consensus 462 vRf~Sa~prpyg~i~fctvgvllr~~e~-----glrg~sh~i~deiherdv-~~dfll~~lr~m~~t----y~dl~v~lm 531 (1282)
T KOG0921|consen 462 VRFDSATPRPYGSIMFCTVGVLLRMMEN-----GLRGISHVIIDEIHERDV-DTDFVLIVLREMIST----YRDLRVVLM 531 (1282)
T ss_pred ccccccccccccceeeeccchhhhhhhh-----cccccccccchhhhhhcc-chHHHHHHHHhhhcc----chhhhhhhh
Confidence 1111111 2337999999986655443 356789999999996642 234444444444433 468899999
Q ss_pred cccCCChhHHHHHhcCCCCceee-------------------cCCCCCccCcEEEE-ecc---------------cccch
Q 000129 1508 STSLANAKDLGEWIGATSHGLFN-------------------FPPGVRPVPLEIHI-QGV---------------DITNF 1552 (2114)
Q Consensus 1508 SATl~n~~dla~wl~~~~~~~~~-------------------f~~~~rpv~l~~~~-~~~---------------~~~~~ 1552 (2114)
|||+ |.+-|..+++..+..... +.++ ++.+..... ..+ ..+.+
T Consensus 532 satI-dTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~-~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~ 609 (1282)
T KOG0921|consen 532 SATI-DTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPS-EPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSY 609 (1282)
T ss_pred hccc-chhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCC-CcCccchhhcccccCchhhhcccccccccChhh
Confidence 9998 676777777654321100 0000 111110000 000 00000
Q ss_pred HHH-HHhcC--------HHHHHHHHHHhc---CCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhH
Q 000129 1553 EAR-MQAMT--------KPTFTAIVQHAK---NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFI 1620 (2114)
Q Consensus 1553 ~~~-~~~~~--------~~~~~~i~~~l~---~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~ 1620 (2114)
... ..+|. -.+..+++.++. -.+-++||.+.-.....+...+..+-
T Consensus 610 ~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~---------------------- 667 (1282)
T KOG0921|consen 610 NESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQ---------------------- 667 (1282)
T ss_pred cchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhh----------------------
Confidence 000 00111 112223332221 13558888888776655554443221
Q ss_pred hhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEe----cCC---cC
Q 000129 1621 DNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYY----DGQ---EN 1693 (2114)
Q Consensus 1621 ~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~y----d~~---~~ 1693 (2114)
...+.-.+.+...|+.+...+++.|++....|..+++++|.+++..+.+.++..||.....| ... .+
T Consensus 668 ------~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~ 741 (1282)
T KOG0921|consen 668 ------EFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTH 741 (1282)
T ss_pred ------hhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceee
Confidence 12233345688899999999999999999999999999999999999999988887433211 111 11
Q ss_pred -cCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHHHHH--HhccCCCCccc---cCCCccchHHH--------
Q 000129 1694 -AHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFL--RLTQNPNYYNL---QGVSHRHLSDH-------- 1759 (2114)
Q Consensus 1694 -~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~~~l--Rl~~nP~~y~l---~~~s~~~l~~~-------- 1759 (2114)
..+..+.....||.||+|| -+.|.|..+|+....+.+.... |+...|..--. +-.-.-++-.|
T Consensus 742 ~Atvw~sktn~eqr~gr~gr---vR~G~~f~lcs~arF~~l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~ 818 (1282)
T KOG0921|consen 742 YATVWASKTNLEQRKGRAGR---VRPGFCFHLCSRARFEALEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPP 818 (1282)
T ss_pred eeeecccccchHhhcccCce---ecccccccccHHHHHHHHHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCC
Confidence 1346678899999999999 5899999999876555444333 55555532211 00011112222
Q ss_pred HHHHHHHHHHHHHHCCCceecCCCccccCcccchhhhcccCHhHHHHHHh
Q 000129 1760 LSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSS 1809 (2114)
Q Consensus 1760 lselve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~i~~~T~~~f~~ 1809 (2114)
+-+.|+.+-..|...++.+..++ .|++|+..+..++.+...+++.-
T Consensus 819 p~dav~e~e~~l~~m~~ld~n~e----lt~lg~~la~l~iep~~~k~~~l 864 (1282)
T KOG0921|consen 819 PYDAVIEAEAVLREMGALDANDE----LTPLGRMLARLPIEPRIGKMMIL 864 (1282)
T ss_pred chhhccCchHHHHHhhhhhccCc----ccchhhhhhhccCcccccceeee
Confidence 33556666677888888876543 78999999999999988777653
No 262
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.35 E-value=1.6e-10 Score=160.52 Aligned_cols=134 Identities=17% Similarity=0.204 Sum_probs=88.7
Q ss_pred CCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHH
Q 000129 1573 NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVS 1652 (2114)
Q Consensus 1573 ~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~ 1652 (2114)
.++++|||++|.+..+.++..|..... ..++..+--|++...|..+.
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~---------------------------------~~~~~ll~Qg~~~~~r~~l~ 797 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEE---------------------------------LEGYVLLAQGVSSGSRARLT 797 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhccc---------------------------------ccCceEEecCCCCCCHHHHH
Confidence 467999999999998888866632111 11233333355556788999
Q ss_pred HHHhcCCceEEEecCccccccCCCCc---EEEEEeeeEecC----------------CcC---cCCCCCHhHHHHhHccc
Q 000129 1653 ALFEAGKIKVCVMSSSMCWGVPLTAH---LVVVMGTQYYDG----------------QEN---AHTDYPVTDLLQMMGHA 1710 (2114)
Q Consensus 1653 ~~F~~g~i~VLVaT~~la~Gvdip~~---~vVI~gt~~yd~----------------~~~---~~~~~s~~~~lQr~GRA 1710 (2114)
+.|+++.-.||++|..+..|||+|+. .|||.+.++-.+ +.. +..|.-+..+.|-+||.
T Consensus 798 ~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRl 877 (928)
T PRK08074 798 KQFQQFDKAILLGTSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRL 877 (928)
T ss_pred HHHHhcCCeEEEecCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhh
Confidence 99999988999999999999999973 456656554211 111 12233366788999999
Q ss_pred CCCCCCCceEEEEEeecCc-HHHHHHHHHhc
Q 000129 1711 SRPLLDNSGKCVILCHAPR-KEYYKKFLRLT 1740 (2114)
Q Consensus 1711 GR~~~~~~G~~iil~~~~~-~~~~~~~lRl~ 1740 (2114)
-|.. +..|.++++-..-. +.|=+.|++.+
T Consensus 878 IRs~-~D~G~v~ilD~R~~~k~Yg~~~l~sL 907 (928)
T PRK08074 878 IRTE-TDRGTVFVLDRRLTTTSYGKYFLESL 907 (928)
T ss_pred cccC-CceEEEEEecCccccchHHHHHHHhC
Confidence 9975 56776666554433 33445555443
No 263
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.33 E-value=1.5e-11 Score=132.23 Aligned_cols=141 Identities=29% Similarity=0.444 Sum_probs=101.3
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchh---
Q 000129 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK--- 1434 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~--- 1434 (2114)
+++++.+|||+|||.++..++.+.+.. ...+ +++|++|++.++.|....+...+.. +..+..+.+.......
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~-~~~~--~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 75 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS-LKGG--QVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKL 75 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc-ccCC--CEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHH
Confidence 368999999999999998888887765 2334 8999999999999999988855442 5677777776554422
Q ss_pred hccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccC
Q 000129 1435 LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSL 1511 (2114)
Q Consensus 1435 ~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl 1511 (2114)
.....+|+++|++.+........ ......+++|+||+|.+....... .. +... .......+++++|||+
T Consensus 76 ~~~~~~i~i~t~~~~~~~~~~~~--~~~~~~~~iiiDE~h~~~~~~~~~---~~--~~~~-~~~~~~~~~i~~saTp 144 (144)
T cd00046 76 LSGKTDIVVGTPGRLLDELERLK--LSLKKLDLLILDEAHRLLNQGFGL---LG--LKIL-LKLPKDRQVLLLSATP 144 (144)
T ss_pred hcCCCCEEEECcHHHHHHHHcCC--cchhcCCEEEEeCHHHHhhcchHH---HH--HHHH-hhCCccceEEEEeccC
Confidence 24567999999999876655432 235578999999999886543111 10 1111 2235678999999996
No 264
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.33 E-value=5.7e-12 Score=142.96 Aligned_cols=151 Identities=23% Similarity=0.327 Sum_probs=99.7
Q ss_pred CCCHHHHHHHHHHHc------CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHh
Q 000129 1341 HFNPIQTQVFTVLYN------TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKF 1414 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~------~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f 1414 (2114)
.|+++|.+++..+.+ ...++++.+|||||||.++...+.+... ++++++|++.|+.|..+.|. .+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~--------~~l~~~p~~~l~~Q~~~~~~-~~ 73 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR--------KVLIVAPNISLLEQWYDEFD-DF 73 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC--------EEEEEESSHHHHHHHHHHHH-HH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc--------ceeEecCHHHHHHHHHHHHH-Hh
Confidence 589999999999874 2577999999999999999765554332 79999999999999999996 34
Q ss_pred cCCCCcEEEEEc------------CCcccc---hhhccCCcEEEEChhhHHHHHhhh---------cccccccceeEEEe
Q 000129 1415 GQGLGMRVVELT------------GETAMD---LKLLEKGQIIISTPEKWDALSRRW---------KQRKYVQQVSLFII 1470 (2114)
Q Consensus 1415 ~~~~g~~v~~l~------------G~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~---------~~~~~l~~v~liIi 1470 (2114)
... ...+.... ...... .......+++++|..+|....+.. .........++||+
T Consensus 74 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~ 152 (184)
T PF04851_consen 74 GSE-KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVII 152 (184)
T ss_dssp STT-SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEE
T ss_pred hhh-hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEE
Confidence 432 11111110 000001 122345689999999998766531 12234567899999
Q ss_pred cccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCC
Q 000129 1471 DELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512 (2114)
Q Consensus 1471 DEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~ 1512 (2114)
||||++.+..+ +..++. .....+|+||||+.
T Consensus 153 DEaH~~~~~~~--~~~i~~---------~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 153 DEAHHYPSDSS--YREIIE---------FKAAFILGLTATPF 183 (184)
T ss_dssp ETGGCTHHHHH--HHHHHH---------SSCCEEEEEESS-S
T ss_pred ehhhhcCCHHH--HHHHHc---------CCCCeEEEEEeCcc
Confidence 99998753221 222222 45778999999984
No 265
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.33 E-value=6e-11 Score=155.70 Aligned_cols=109 Identities=18% Similarity=0.162 Sum_probs=90.3
Q ss_pred cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHH
Q 000129 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2114)
Q Consensus 1572 ~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v 1651 (2114)
..+.|+||||+|+..++.++..|... +.....+|+ .+.+|...
T Consensus 596 ~~grpVLIft~Sve~sE~Ls~~L~~~-----------------------------------gI~h~vLna--kq~~REa~ 638 (1025)
T PRK12900 596 KKGQPVLVGTASVEVSETLSRMLRAK-----------------------------------RIAHNVLNA--KQHDREAE 638 (1025)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHc-----------------------------------CCCceeecC--CHHHhHHH
Confidence 46789999999999998888766431 233567886 58899999
Q ss_pred HHHHhcCCceEEEecCccccccCCC---Cc-----EEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEE
Q 000129 1652 SALFEAGKIKVCVMSSSMCWGVPLT---AH-----LVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVI 1723 (2114)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdip---~~-----~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~ii 1723 (2114)
+..|+.+...|+|||++++||+||+ .+ .+|| +...+.+...|.|++|||||. |.+|.++.
T Consensus 639 Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VI----------gterhes~Rid~Ql~GRtGRq--GdpGsS~f 706 (1025)
T PRK12900 639 IVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFIL----------GSERHESRRIDRQLRGRAGRQ--GDPGESVF 706 (1025)
T ss_pred HHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceee----------CCCCCchHHHHHHHhhhhhcC--CCCcceEE
Confidence 9999999999999999999999999 34 2446 566788889999999999998 78999999
Q ss_pred EeecCc
Q 000129 1724 LCHAPR 1729 (2114)
Q Consensus 1724 l~~~~~ 1729 (2114)
|++..+
T Consensus 707 fvSleD 712 (1025)
T PRK12900 707 YVSLED 712 (1025)
T ss_pred EechhH
Confidence 888755
No 266
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.32 E-value=1.7e-11 Score=131.92 Aligned_cols=140 Identities=29% Similarity=0.378 Sum_probs=101.6
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccCh
Q 000129 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR 592 (2114)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~ 592 (2114)
++++++|||+|||.+++..+.+....+. ..+++|++|+++|+.|..+.+...... ++.+..+.+......
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~---------~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 71 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLK---------GGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQ 71 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhccc---------CCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhH
Confidence 6899999999999999999888776521 238999999999999999999887765 677888887665443
Q ss_pred hh---hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEccc
Q 000129 593 QQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2114)
Q Consensus 593 ~~---~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSAT 669 (2114)
.. ....+|+++|++.+........ ......+++||||+|.+......... ...........+++++|||
T Consensus 72 ~~~~~~~~~~i~i~t~~~~~~~~~~~~--~~~~~~~~iiiDE~h~~~~~~~~~~~------~~~~~~~~~~~~~i~~saT 143 (144)
T cd00046 72 QEKLLSGKTDIVVGTPGRLLDELERLK--LSLKKLDLLILDEAHRLLNQGFGLLG------LKILLKLPKDRQVLLLSAT 143 (144)
T ss_pred HHHHhcCCCCEEEECcHHHHHHHHcCC--cchhcCCEEEEeCHHHHhhcchHHHH------HHHHhhCCccceEEEEecc
Confidence 32 4688999999998643333221 23456889999999998653211111 1111224567889999999
Q ss_pred c
Q 000129 670 L 670 (2114)
Q Consensus 670 l 670 (2114)
+
T Consensus 144 p 144 (144)
T cd00046 144 P 144 (144)
T ss_pred C
Confidence 4
No 267
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.31 E-value=2.4e-10 Score=146.46 Aligned_cols=127 Identities=18% Similarity=0.129 Sum_probs=94.6
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.++++|--..-.++.| + |....||+|||+++.+|++..... +. .+.+++|+.-||.+-++.+...|. .+|+
T Consensus 78 r~ydvQlig~l~Ll~G-~--VaEM~TGEGKTLvA~l~a~l~AL~---G~--~VhvvT~NdyLA~RDae~m~~ly~-~LGL 148 (764)
T PRK12326 78 RPFDVQLLGALRLLAG-D--VIEMATGEGKTLAGAIAAAGYALQ---GR--RVHVITVNDYLARRDAEWMGPLYE-ALGL 148 (764)
T ss_pred CcchHHHHHHHHHhCC-C--cccccCCCCHHHHHHHHHHHHHHc---CC--CeEEEcCCHHHHHHHHHHHHHHHH-hcCC
Confidence 5777887777666653 3 678999999999999999876655 44 788999999999999998886554 4699
Q ss_pred EEEEEcCCcccc-hhhccCCcEEEEChhhHH-HHHhhhc----ccccccceeEEEecccccc
Q 000129 1421 RVVELTGETAMD-LKLLEKGQIIISTPEKWD-ALSRRWK----QRKYVQQVSLFIIDELHLI 1476 (2114)
Q Consensus 1421 ~v~~l~G~~~~~-~~~l~~~~IIV~TPe~l~-~l~r~~~----~~~~l~~v~liIiDEaH~l 1476 (2114)
+|+.++++.+.. .+..-.+||+++|..-+- ..+|... .......+.+.||||+|.+
T Consensus 149 svg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSi 210 (764)
T PRK12326 149 TVGWITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSV 210 (764)
T ss_pred EEEEECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhh
Confidence 999999987755 334457899999998752 1333211 1123455889999999954
No 268
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.30 E-value=3.7e-11 Score=142.38 Aligned_cols=316 Identities=14% Similarity=0.204 Sum_probs=192.2
Q ss_pred CCCCCHHHHHHHHHHHcCC--CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000129 1339 FKHFNPIQTQVFTVLYNTD--DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~~--~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~ 1416 (2114)
-..++|+|.+.+..++.++ .+-+|..|-|+|||++..-|+. .-++ +||+++.+-.-+.|+...|+ .+..
T Consensus 300 st~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~------tikK--~clvLcts~VSVeQWkqQfk-~wst 370 (776)
T KOG1123|consen 300 STQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC------TIKK--SCLVLCTSAVSVEQWKQQFK-QWST 370 (776)
T ss_pred ccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee------eecc--cEEEEecCccCHHHHHHHHH-hhcc
Confidence 4578999999999998654 4689999999999998755543 1233 79999999999999888887 6776
Q ss_pred CCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHh-hhcccc-----cccceeEEEecccccccCCCCchHHHHHHH
Q 000129 1417 GLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSR-RWKQRK-----YVQQVSLFIIDELHLIGGQGGPVLEVIVSR 1490 (2114)
Q Consensus 1417 ~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r-~~~~~~-----~l~~v~liIiDEaH~l~~~~g~~le~i~sr 1490 (2114)
.....++.+|++..... -..+.|+|+|..++..--+ .|...+ .-+..+++|+||+|.+.. ..+..+++-
T Consensus 371 i~d~~i~rFTsd~Ke~~--~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA---~MFRRVlsi 445 (776)
T KOG1123|consen 371 IQDDQICRFTSDAKERF--PSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPA---KMFRRVLSI 445 (776)
T ss_pred cCccceEEeeccccccC--CCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchH---HHHHHHHHH
Confidence 66677888888765432 2356899999877543221 111111 124579999999998742 122223332
Q ss_pred HHHHHhhcCCCceEEEEcccCCChhH----H----------HHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHH
Q 000129 1491 MRYIASQVENKIRIVALSTSLANAKD----L----------GEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARM 1556 (2114)
Q Consensus 1491 l~~i~~~~~~~~riV~lSATl~n~~d----l----------a~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~ 1556 (2114)
+.. .+ -+||+||+-..+| + +.|+.....+.+. .|.....-.+....-+...+
T Consensus 446 v~a-------Hc-KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA------~VqCaEVWCpMt~eFy~eYL 511 (776)
T KOG1123|consen 446 VQA-------HC-KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIA------KVQCAEVWCPMTPEFYREYL 511 (776)
T ss_pred HHH-------Hh-hccceeEEeeccccccccceeecchhhhccHHHHHhCCcee------EEeeeeeecCCCHHHHHHHH
Confidence 221 22 2899999965332 1 4555443322211 00000000111111111110
Q ss_pred ----------HhcCHHHHHH----HHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhh
Q 000129 1557 ----------QAMTKPTFTA----IVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDN 1622 (2114)
Q Consensus 1557 ----------~~~~~~~~~~----i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 1622 (2114)
..|+...+.+ |.-|-..+.++|||..+.-.-...|
T Consensus 512 ~~~t~kr~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YA------------------------------- 560 (776)
T KOG1123|consen 512 RENTRKRMLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYA------------------------------- 560 (776)
T ss_pred hhhhhhhheeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHH-------------------------------
Confidence 1122221211 1122234556777766654333333
Q ss_pred hhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhc-CCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHh
Q 000129 1623 IQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA-GKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVT 1701 (2114)
Q Consensus 1623 i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~-g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~ 1701 (2114)
+..|--+++|..++.+|..|++.|.- ..+.-++-+.+...++|+|..+++|.-..+|. |..
T Consensus 561 ---------ikl~KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~G---------SRR 622 (776)
T KOG1123|consen 561 ---------IKLGKPFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGG---------SRR 622 (776)
T ss_pred ---------HHcCCceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEccccc---------chH
Confidence 33456689999999999999999985 47899999999999999999999994333333 334
Q ss_pred HHHHhHcccCCCCC--C--CceEEEEEeecCcHH
Q 000129 1702 DLLQMMGHASRPLL--D--NSGKCVILCHAPRKE 1731 (2114)
Q Consensus 1702 ~~lQr~GRAGR~~~--~--~~G~~iil~~~~~~~ 1731 (2114)
.=.||.||.-|+-. + -....|.+++....+
T Consensus 623 QEAQRLGRILRAKk~~de~fnafFYSLVS~DTqE 656 (776)
T KOG1123|consen 623 QEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQE 656 (776)
T ss_pred HHHHHHHHHHHHhhcCccccceeeeeeeecchHH
Confidence 55799998777521 1 234455555554433
No 269
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.28 E-value=1.8e-11 Score=138.80 Aligned_cols=150 Identities=24% Similarity=0.307 Sum_probs=97.4
Q ss_pred CCCHHHHHHHHHHHc------CCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHH
Q 000129 495 QLNRVQSRVYKSALS------SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVG 568 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~------~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~ 568 (2114)
+|+++|.+++..+.. ...++++.||||||||.++...+.+... ++++++|+++|+.|+..
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~--------------~~l~~~p~~~l~~Q~~~ 68 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR--------------KVLIVAPNISLLEQWYD 68 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC--------------EEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc--------------ceeEecCHHHHHHHHHH
Confidence 589999999998874 2567999999999999999866665532 69999999999999999
Q ss_pred HHHHhhccCCcEEEEEe------------CCCccCh---hhhccceEEEcCHhHHHHHHhccC---------CCcccccc
Q 000129 569 NLSNRLQMYDVKVRELS------------GDQTLTR---QQIEETQIIVTTPEKWDIITRKSG---------DRTYTQLV 624 (2114)
Q Consensus 569 ~~~~~~~~~gi~v~~l~------------Gd~~~~~---~~~~~~~IiV~TPek~d~l~r~~~---------~~~~l~~v 624 (2114)
.|...... ...+.... ....... ......+++++|..+|....+... ........
T Consensus 69 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (184)
T PF04851_consen 69 EFDDFGSE-KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKF 147 (184)
T ss_dssp HHHHHSTT-SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSE
T ss_pred HHHHhhhh-hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccC
Confidence 99654432 11111110 0001111 113467899999999854443211 11234567
Q ss_pred cEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEcccc
Q 000129 625 KLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670 (2114)
Q Consensus 625 ~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATl 670 (2114)
++||+||||++....+ +..++. .....+|+||||.
T Consensus 148 ~~vI~DEaH~~~~~~~--~~~i~~---------~~~~~~l~lTATp 182 (184)
T PF04851_consen 148 DLVIIDEAHHYPSDSS--YREIIE---------FKAAFILGLTATP 182 (184)
T ss_dssp SEEEEETGGCTHHHHH--HHHHHH---------SSCCEEEEEESS-
T ss_pred CEEEEehhhhcCCHHH--HHHHHc---------CCCCeEEEEEeCc
Confidence 8999999998753111 222222 4577789999994
No 270
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.27 E-value=8.2e-10 Score=143.77 Aligned_cols=72 Identities=25% Similarity=0.278 Sum_probs=54.8
Q ss_pred HHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh-cc--CCcEEE
Q 000129 506 SALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL-QM--YDVKVR 582 (2114)
Q Consensus 506 ~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~-~~--~gi~v~ 582 (2114)
.++..+..+++.||||+|||++|++|++..+... .+.++||++||++|+.|+++.+..+. +. ..+++.
T Consensus 11 ~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~---------~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~ 81 (636)
T TIGR03117 11 TSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER---------PDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAG 81 (636)
T ss_pred HHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc---------cCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEE
Confidence 3456677899999999999999999999877532 12489999999999999999887655 22 244554
Q ss_pred EEeC
Q 000129 583 ELSG 586 (2114)
Q Consensus 583 ~l~G 586 (2114)
.+.|
T Consensus 82 ~lkG 85 (636)
T TIGR03117 82 FFPG 85 (636)
T ss_pred EEEC
Confidence 4433
No 271
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.27 E-value=2.4e-11 Score=129.69 Aligned_cols=105 Identities=33% Similarity=0.518 Sum_probs=89.9
Q ss_pred CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHH
Q 000129 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (2114)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~ 811 (2114)
.++++||||+++..++.+++.|.+. ..++.++||+++..+|..
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~-------------------------------------~~~~~~~~~~~~~~~~~~ 69 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKP-------------------------------------GIKVAALHGDGSQEEREE 69 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhc-------------------------------------CCcEEEEECCCCHHHHHH
Confidence 4679999999999999999888651 245788999999999999
Q ss_pred HHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEE
Q 000129 812 VEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885 (2114)
Q Consensus 812 v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil 885 (2114)
+.+.|.+|..+||+||+++++|+|+|..++||. ++++ .+..+++|++||+||.| ..|.++++
T Consensus 70 ~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~----~~~~------~~~~~~~Q~~GR~~R~~--~~~~~~~~ 131 (131)
T cd00079 70 VLKDFREGEIVVLVATDVIARGIDLPNVSVVIN----YDLP------WSPSSYLQRIGRAGRAG--QKGTAILL 131 (131)
T ss_pred HHHHHHcCCCcEEEEcChhhcCcChhhCCEEEE----eCCC------CCHHHheecccccccCC--CCceEEeC
Confidence 999999999999999999999999999988886 4443 26778999999999988 46777653
No 272
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.27 E-value=2.1e-11 Score=130.12 Aligned_cols=113 Identities=27% Similarity=0.363 Sum_probs=95.2
Q ss_pred HHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCC
Q 000129 1565 TAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLN 1644 (2114)
Q Consensus 1565 ~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls 1644 (2114)
..+......++++||||++...++.++..|.. ...++.++||+++
T Consensus 19 ~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~-----------------------------------~~~~~~~~~~~~~ 63 (131)
T cd00079 19 ELLKEHLKKGGKVLIFCPSKKMLDELAELLRK-----------------------------------PGIKVAALHGDGS 63 (131)
T ss_pred HHHHhcccCCCcEEEEeCcHHHHHHHHHHHHh-----------------------------------cCCcEEEEECCCC
Confidence 33444433678999999999999888866632 2456899999999
Q ss_pred HHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEE
Q 000129 1645 KTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVIL 1724 (2114)
Q Consensus 1645 ~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil 1724 (2114)
..+|..+.+.|.+|..+||++|+.+++|+|+|...+|| ..+.+.+..+++|++||+||.| ..|.++++
T Consensus 64 ~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi----------~~~~~~~~~~~~Q~~GR~~R~~--~~~~~~~~ 131 (131)
T cd00079 64 QEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVI----------NYDLPWSPSSYLQRIGRAGRAG--QKGTAILL 131 (131)
T ss_pred HHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEE----------EeCCCCCHHHheecccccccCC--CCceEEeC
Confidence 99999999999999999999999999999999888777 5677899999999999999984 47887764
No 273
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.27 E-value=8.3e-12 Score=120.54 Aligned_cols=73 Identities=36% Similarity=0.578 Sum_probs=66.3
Q ss_pred ccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccC
Q 000129 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (2114)
Q Consensus 793 l~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAG 872 (2114)
....+.++||+++..+|..+++.|.+|..+|||||+++++|||+|++++||. |+++. +..+|.|++||+|
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~----~~~~~------~~~~~~Q~~GR~~ 75 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIF----YDPPW------SPEEYIQRIGRAG 75 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEE----SSSES------SHHHHHHHHTTSS
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccc----cccCC------CHHHHHHHhhcCC
Confidence 3467899999999999999999999999999999999999999999999998 55543 7788999999999
Q ss_pred CCC
Q 000129 873 RPQ 875 (2114)
Q Consensus 873 R~g 875 (2114)
|.|
T Consensus 76 R~g 78 (78)
T PF00271_consen 76 RIG 78 (78)
T ss_dssp TTT
T ss_pred CCC
Confidence 975
No 274
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.25 E-value=1.5e-09 Score=141.32 Aligned_cols=66 Identities=20% Similarity=0.247 Sum_probs=52.3
Q ss_pred HHHHHHHH---HcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000129 1346 QTQVFTVL---YNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2114)
Q Consensus 1346 Q~q~~~~i---l~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~ 1415 (2114)
|.+.+..+ +..+..+++.||||+|||++|++|++..+.. ..+. ++||++||++|+.|++++|. .+.
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~-~~~~--rvlIstpT~~Lq~Ql~~~l~-~l~ 70 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKE-RPDQ--KIAIAVPTLALMGQLWSELE-RLT 70 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHh-ccCc--eEEEECCcHHHHHHHHHHHH-HHH
Confidence 44444443 3557779999999999999999999987764 1234 99999999999999999888 455
No 275
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.24 E-value=4.3e-10 Score=148.32 Aligned_cols=163 Identities=17% Similarity=0.136 Sum_probs=98.5
Q ss_pred CCHHHHHHHHHHHc----C--CC-cEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHh
Q 000129 1342 FNPIQTQVFTVLYN----T--DD-NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKF 1414 (2114)
Q Consensus 1342 ~~~iQ~q~~~~il~----~--~~-nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f 1414 (2114)
-..+|-+|++.+.. + .. =++-.|.||||||++=. =|+..+.. +..++|..+-.-.|.|.-|+-..+++++
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNA-RImyaLsd--~~~g~RfsiALGLRTLTLQTGda~r~rL 485 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANA-RAMYALRD--DKQGARFAIALGLRSLTLQTGHALKTRL 485 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHH-HHHHHhCC--CCCCceEEEEccccceeccchHHHHHhc
Confidence 45699999998753 1 11 23445999999998753 33334444 2334588888999999999888888776
Q ss_pred cCCCCcEEEEEcCCcc----------------------c--------------------------------chhhccCCc
Q 000129 1415 GQGLGMRVVELTGETA----------------------M--------------------------------DLKLLEKGQ 1440 (2114)
Q Consensus 1415 ~~~~g~~v~~l~G~~~----------------------~--------------------------------~~~~l~~~~ 1440 (2114)
+-. .-..+++.|+.. . ..+.+-.+.
T Consensus 486 ~L~-~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~ap 564 (1110)
T TIGR02562 486 NLS-DDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAP 564 (1110)
T ss_pred CCC-ccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCC
Confidence 521 223333333110 0 001112348
Q ss_pred EEEEChhhHHHHHhhhcccc-ccc----ceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCCh
Q 000129 1441 IIISTPEKWDALSRRWKQRK-YVQ----QVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA 1514 (2114)
Q Consensus 1441 IIV~TPe~l~~l~r~~~~~~-~l~----~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~ 1514 (2114)
|+|||+.++....-..+... .+. .-+.|||||+|.+... .-.++.++-..... -..++++||||+|..
T Consensus 565 v~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~----~~~~L~rlL~w~~~--lG~~VlLmSATLP~~ 637 (1110)
T TIGR02562 565 VLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPE----DLPALLRLVQLAGL--LGSRVLLSSATLPPA 637 (1110)
T ss_pred eEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHH----HHHHHHHHHHHHHH--cCCCEEEEeCCCCHH
Confidence 99999999876552211111 111 1368999999977532 22344444444333 368899999999874
No 276
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.24 E-value=1.6e-11 Score=118.50 Aligned_cols=75 Identities=17% Similarity=0.293 Sum_probs=70.3
Q ss_pred HHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcc
Q 000129 1630 ATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGH 1709 (2114)
Q Consensus 1630 ~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GR 1709 (2114)
+..+..+..+||+++..+|..+++.|.+|..+|||||+++++|+|+|.+.+|| .++.+.+..+|.|++||
T Consensus 4 ~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi----------~~~~~~~~~~~~Q~~GR 73 (78)
T PF00271_consen 4 EKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVI----------FYDPPWSPEEYIQRIGR 73 (78)
T ss_dssp HHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEE----------ESSSESSHHHHHHHHTT
T ss_pred HHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeecccccccccccccccc----------ccccCCCHHHHHHHhhc
Confidence 34567899999999999999999999999999999999999999999999999 78889999999999999
Q ss_pred cCCCC
Q 000129 1710 ASRPL 1714 (2114)
Q Consensus 1710 AGR~~ 1714 (2114)
+||.|
T Consensus 74 ~~R~g 78 (78)
T PF00271_consen 74 AGRIG 78 (78)
T ss_dssp SSTTT
T ss_pred CCCCC
Confidence 99964
No 277
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.21 E-value=1.7e-09 Score=142.80 Aligned_cols=160 Identities=23% Similarity=0.221 Sum_probs=97.1
Q ss_pred CHHHHHHHHHHHc----CCC---cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000129 497 NRVQSRVYKSALS----SAD---NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (2114)
Q Consensus 497 ~~iQ~~~i~~~l~----~~~---nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~ 569 (2114)
..+|-+|++.+.. +.+ =++-.|.||||||++=.- |+..+... ..+++..+..-.|.|.-|....
T Consensus 410 F~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNAR-ImyaLsd~--------~~g~RfsiALGLRTLTLQTGda 480 (1110)
T TIGR02562 410 FRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANAR-AMYALRDD--------KQGARFAIALGLRSLTLQTGHA 480 (1110)
T ss_pred cchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHH-HHHHhCCC--------CCCceEEEEccccceeccchHH
Confidence 4699999987754 111 245569999999986432 33344322 2356888888888888888888
Q ss_pred HHHhhccCCcEEEEEeCCCcc----------------------C-----hh---------------------------hh
Q 000129 570 LSNRLQMYDVKVRELSGDQTL----------------------T-----RQ---------------------------QI 595 (2114)
Q Consensus 570 ~~~~~~~~gi~v~~l~Gd~~~----------------------~-----~~---------------------------~~ 595 (2114)
++++++--.-.++++.|+... + .. ..
T Consensus 481 ~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rl 560 (1110)
T TIGR02562 481 LKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTL 560 (1110)
T ss_pred HHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhh
Confidence 888765333334444442110 0 00 01
Q ss_pred ccceEEEcCHhHHHHHH--hccCCCcccc----cccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEccc
Q 000129 596 EETQIIVTTPEKWDIIT--RKSGDRTYTQ----LVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2114)
Q Consensus 596 ~~~~IiV~TPek~d~l~--r~~~~~~~l~----~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSAT 669 (2114)
-.+.|+|||+..+-... -+.+. ..+. .-+.|||||+|.+ .+..-.++.+++..... .+.++++||||
T Consensus 561 l~apv~V~TIDQlL~a~~~~r~~~-~~l~ll~La~svlVlDEVHaY----D~~~~~~L~rlL~w~~~--lG~~VlLmSAT 633 (1110)
T TIGR02562 561 LAAPVLVCTIDHLIPATESHRGGH-HIAPMLRLMSSDLILDEPDDY----EPEDLPALLRLVQLAGL--LGSRVLLSSAT 633 (1110)
T ss_pred hcCCeEEecHHHHHHHhhhcccch-hHHHHHHhcCCCEEEECCccC----CHHHHHHHHHHHHHHHH--cCCCEEEEeCC
Confidence 13579999999863222 11111 1111 1267999999965 34444556666554443 46889999999
Q ss_pred cCC
Q 000129 670 LPN 672 (2114)
Q Consensus 670 lpn 672 (2114)
||.
T Consensus 634 LP~ 636 (1110)
T TIGR02562 634 LPP 636 (1110)
T ss_pred CCH
Confidence 995
No 278
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.20 E-value=6e-11 Score=148.93 Aligned_cols=336 Identities=17% Similarity=0.165 Sum_probs=208.2
Q ss_pred HHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEE
Q 000129 504 YKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRE 583 (2114)
Q Consensus 504 i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~ 583 (2114)
+-.+...++.++|-+.||+|||..+...||..+...... ..+-+++-.|++-.+..+++++..-- +-.++.
T Consensus 386 i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g------~~~na~v~qprrisaisiaerva~er---~e~~g~ 456 (1282)
T KOG0921|consen 386 ILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNG------ASFNAVVSQPRRISAISLAERVANER---GEEVGE 456 (1282)
T ss_pred HHHHHhcCceeeEeecccccchhHHHHHHHHHHhhcccc------ccccceeccccccchHHHHHHHHHhh---HHhhcc
Confidence 344556677799999999999999999999998876431 23468888999999999888876422 112222
Q ss_pred EeCCCc-cChh-hhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccc
Q 000129 584 LSGDQT-LTRQ-QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHI 661 (2114)
Q Consensus 584 l~Gd~~-~~~~-~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~ 661 (2114)
..|-.. +... ....--|..||-| .+.|..- .-+..+.++|+||+|.- .+...++..+++-+..+...+
T Consensus 457 tvgy~vRf~Sa~prpyg~i~fctvg---vllr~~e--~glrg~sh~i~deiher-----dv~~dfll~~lr~m~~ty~dl 526 (1282)
T KOG0921|consen 457 TCGYNVRFDSATPRPYGSIMFCTVG---VLLRMME--NGLRGISHVIIDEIHER-----DVDTDFVLIVLREMISTYRDL 526 (1282)
T ss_pred cccccccccccccccccceeeeccc---hhhhhhh--hcccccccccchhhhhh-----ccchHHHHHHHHhhhccchhh
Confidence 222111 1000 1123458899988 4555432 34556889999999973 233344455556666778899
Q ss_pred cEEEEccccCChHHHHHHHhccccCceEeecCCcccc--------------------cceeEEEe---------------
Q 000129 662 RLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPV--------------------PLSQQYIG--------------- 706 (2114)
Q Consensus 662 riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv--------------------~l~~~~~~--------------- 706 (2114)
+++++|||+ |-+-+..|++.-+.. ...+...|+ +....+..
T Consensus 527 ~v~lmsatI-dTd~f~~~f~~~p~~---~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n 602 (1282)
T KOG0921|consen 527 RVVLMSATI-DTDLFTNFFSSIPDV---TVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMN 602 (1282)
T ss_pred hhhhhhccc-chhhhhhhhccccce---eeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccc
Confidence 999999997 445566666543221 111111111 11000000
Q ss_pred -eccCchhH-HHHHhh--------HHHHHHHHHHhC----CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCch
Q 000129 707 -IQVKKPLQ-RFQLMN--------DLCYEKVVAVAG----KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSV 772 (2114)
Q Consensus 707 -~~~~~~~~-~~~~~~--------~~~~~~i~~~~~----~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~ 772 (2114)
........ -..+|. --+.+++..... .+-++||.+.-.....+..++.......
T Consensus 603 ~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg------------ 670 (1282)
T KOG0921|consen 603 ILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFG------------ 670 (1282)
T ss_pred cccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhc------------
Confidence 00000000 000000 001122222111 4678999999888888877776542111
Q ss_pred hHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCC
Q 000129 773 SREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPE 852 (2114)
Q Consensus 773 ~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~ 852 (2114)
.+-.+.+...|+.+...++..|.+....|..+++++|.+++..+.+.++..||+....|-.-
T Consensus 671 ------------------~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~ 732 (1282)
T KOG0921|consen 671 ------------------QANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKL 732 (1282)
T ss_pred ------------------cchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeee
Confidence 11123344559999999999999999999999999999999999999988888755443211
Q ss_pred --C------CccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcHHHHH
Q 000129 853 --K------GAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYL 895 (2114)
Q Consensus 853 --~------g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~ 895 (2114)
+ -..++.|.....||.||+||. .+|.|..+|+.-..+.+.
T Consensus 733 ~~s~nn~~~~Atvw~sktn~eqr~gr~grv---R~G~~f~lcs~arF~~l~ 780 (1282)
T KOG0921|consen 733 FTSHNNMTHYATVWASKTNLEQRKGRAGRV---RPGFCFHLCSRARFEALE 780 (1282)
T ss_pred eccccceeeeeeecccccchHhhcccCcee---cccccccccHHHHHHHHH
Confidence 0 012677889999999999996 689999998865544433
No 279
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.20 E-value=4.7e-09 Score=141.59 Aligned_cols=70 Identities=21% Similarity=0.228 Sum_probs=53.9
Q ss_pred hhcCCCCCCCHHHHHHHHH---HHcC-----CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 488 PAFKGMTQLNRVQSRVYKS---ALSS-----ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 488 ~~f~g~~~l~~iQ~~~i~~---~l~~-----~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
..++|| +.++-|.+.... ++.+ ++.++|-||||+|||++|++|++...... +.++||-+.|
T Consensus 19 ~~~~~~-e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~----------~k~vVIST~T 87 (697)
T PRK11747 19 EQLPGF-IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAE----------KKKLVISTAT 87 (697)
T ss_pred HhCCCC-CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHc----------CCeEEEEcCC
Confidence 334566 689999985544 4555 36688999999999999999998765532 2379999999
Q ss_pred HHHHHHHHH
Q 000129 560 KALVAEVVG 568 (2114)
Q Consensus 560 raLa~q~~~ 568 (2114)
++|-.|+..
T Consensus 88 ~~LQeQL~~ 96 (697)
T PRK11747 88 VALQEQLVS 96 (697)
T ss_pred HHHHHHHHh
Confidence 999988863
No 280
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.19 E-value=2.6e-09 Score=138.77 Aligned_cols=127 Identities=12% Similarity=0.106 Sum_probs=93.3
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.++++|--.--. ++.+ -|.-..||=|||+++.+|+.-....++ .|-+++..--||..=++.+...+
T Consensus 78 r~ydVQliGglv-Lh~G--~IAEMkTGEGKTLvAtLpayLnAL~Gk-----------gVhVVTvNdYLA~RDae~mg~vy 143 (925)
T PRK12903 78 RPYDVQIIGGII-LDLG--SVAEMKTGEGKTITSIAPVYLNALTGK-----------GVIVSTVNEYLAERDAEEMGKVF 143 (925)
T ss_pred CcCchHHHHHHH-HhcC--CeeeecCCCCccHHHHHHHHHHHhcCC-----------ceEEEecchhhhhhhHHHHHHHH
Confidence 567788766543 4433 478999999999999998865444432 46777888889998888999999
Q ss_pred ccCCcEEEEEeCCCccCh-hhhccceEEEcCHhHH--HHHHhccC---CCcccccccEEEEeccccc
Q 000129 575 QMYDVKVRELSGDQTLTR-QQIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~-~~~~~~~IiV~TPek~--d~l~r~~~---~~~~l~~v~liIiDEaH~l 635 (2114)
..+|++|+....+..... +..-.++|+++|..-+ |.|.-+.. .......+.+.||||||.+
T Consensus 144 ~fLGLsvG~i~~~~~~~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSI 210 (925)
T PRK12903 144 NFLGLSVGINKANMDPNLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSI 210 (925)
T ss_pred HHhCCceeeeCCCCChHHHHHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhe
Confidence 999999999887765443 3345799999998875 55543321 1233466789999999965
No 281
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.18 E-value=9.8e-10 Score=144.36 Aligned_cols=127 Identities=19% Similarity=0.185 Sum_probs=90.4
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.++++|--.--.+ +.+ -|....||+|||+++.+|++-.... +. .+.+++|+.-||.+-+..+...|. .+|+
T Consensus 82 ~~ydVQliGg~~L-h~G--~iaEM~TGEGKTLvA~l~a~l~al~---G~--~VhvvT~ndyLA~RD~e~m~~l~~-~lGl 152 (913)
T PRK13103 82 RHFDVQLIGGMTL-HEG--KIAEMRTGEGKTLVGTLAVYLNALS---GK--GVHVVTVNDYLARRDANWMRPLYE-FLGL 152 (913)
T ss_pred CcchhHHHhhhHh-ccC--ccccccCCCCChHHHHHHHHHHHHc---CC--CEEEEeCCHHHHHHHHHHHHHHhc-ccCC
Confidence 4555554433223 323 5788999999999999999866555 33 788999999999999998885554 5699
Q ss_pred EEEEEcCCcccc-hhhccCCcEEEEChhhH--HHHHhhhc---ccccccceeEEEecccccc
Q 000129 1421 RVVELTGETAMD-LKLLEKGQIIISTPEKW--DALSRRWK---QRKYVQQVSLFIIDELHLI 1476 (2114)
Q Consensus 1421 ~v~~l~G~~~~~-~~~l~~~~IIV~TPe~l--~~l~r~~~---~~~~l~~v~liIiDEaH~l 1476 (2114)
+|++++|+.+.. .+..-.++|+++|..-+ |.|-.+.. .......+.++||||+|.+
T Consensus 153 ~v~~i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsi 214 (913)
T PRK13103 153 SVGIVTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSI 214 (913)
T ss_pred EEEEECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhhe
Confidence 999999987654 33445589999999875 32222111 1123467899999999955
No 282
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.17 E-value=3e-09 Score=139.28 Aligned_cols=127 Identities=17% Similarity=0.093 Sum_probs=94.5
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.++++|--..-. +.. .-|..+.||.|||+++.+|+.-....+ ..|-+|+++..||..-++.+...+
T Consensus 76 r~ydvQlig~l~-L~~--G~IaEm~TGEGKTL~a~l~ayl~aL~G-----------~~VhVvT~NdyLA~RD~e~m~pvy 141 (870)
T CHL00122 76 RHFDVQLIGGLV-LND--GKIAEMKTGEGKTLVATLPAYLNALTG-----------KGVHIVTVNDYLAKRDQEWMGQIY 141 (870)
T ss_pred CCCchHhhhhHh-hcC--CccccccCCCCchHHHHHHHHHHHhcC-----------CceEEEeCCHHHHHHHHHHHHHHH
Confidence 467777765433 332 368899999999999999985443332 258899999999999999999999
Q ss_pred ccCCcEEEEEeCCCccChh-hhccceEEEcCHhHH--HHHHhccC---CCcccccccEEEEeccccc
Q 000129 575 QMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~-~~~~~~IiV~TPek~--d~l~r~~~---~~~~l~~v~liIiDEaH~l 635 (2114)
..+|++|+...++.+...+ ..-.++|+++|..-+ |.|.-+.. .....+.+.+.||||||.+
T Consensus 142 ~~LGLsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSi 208 (870)
T CHL00122 142 RFLGLTVGLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSI 208 (870)
T ss_pred HHcCCceeeeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhh
Confidence 9999999999887765543 345789999999764 55443321 1223456789999999965
No 283
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.17 E-value=4e-09 Score=143.56 Aligned_cols=72 Identities=22% Similarity=0.357 Sum_probs=60.6
Q ss_pred CCCCCHHHHHHHHHHH---cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHH
Q 000129 1339 FKHFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEI 1412 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il---~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~ 1412 (2114)
|..++|.|.+....++ ..++++++.||||+|||++.+.|.+........ ..+++|.+.|..-..|..+++++
T Consensus 8 y~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~--~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 8 YEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPE--VRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccc--cccEEEEcccchHHHHHHHHHHh
Confidence 8888999999888764 467889999999999999999999987664222 23899999999999999999984
No 284
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.16 E-value=1.7e-09 Score=135.06 Aligned_cols=340 Identities=18% Similarity=0.230 Sum_probs=197.4
Q ss_pred CCCCHHHHHHHHH---HHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc-CCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000129 1340 KHFNPIQTQVFTV---LYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~---il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~-~~~~~k~l~I~Ptr~La~q~~~~~~~~f~ 1415 (2114)
-.++++|-+-++- +++.+-|.|+.-.-|=|||+.. ++++..+.... ..| .-+|++|.-.| ..+.++++ +|.
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~~~~G--PfLVi~P~StL-~NW~~Ef~-rf~ 240 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRKGIPG--PFLVIAPKSTL-DNWMNEFK-RFT 240 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhcCCCC--CeEEEeeHhhH-HHHHHHHH-HhC
Confidence 3688999887775 4667888999999999999875 44554554422 234 56899998666 44566666 566
Q ss_pred CCCCcEEEEEcCCcccchh----hcc--CCcEEEEChhhHHHHHhhhccccccc--ceeEEEecccccccCCCCchHHHH
Q 000129 1416 QGLGMRVVELTGETAMDLK----LLE--KGQIIISTPEKWDALSRRWKQRKYVQ--QVSLFIIDELHLIGGQGGPVLEVI 1487 (2114)
Q Consensus 1416 ~~~g~~v~~l~G~~~~~~~----~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~--~v~liIiDEaH~l~~~~g~~le~i 1487 (2114)
+ ++++..++|+...... .+. .-+|+|+|.|....- ...++ ..+++||||+|+|-...
T Consensus 241 P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d------k~~lk~~~W~ylvIDEaHRiKN~~------- 305 (971)
T KOG0385|consen 241 P--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD------KSFLKKFNWRYLVIDEAHRIKNEK------- 305 (971)
T ss_pred C--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh------HHHHhcCCceEEEechhhhhcchh-------
Confidence 4 7899999998654322 122 349999999985432 11222 35799999999997654
Q ss_pred HHHHHHHHhhcCCCceEEEEcccCCC-------------------hhHHHHHhcCCCCceeecCCCCCccCcEEEEeccc
Q 000129 1488 VSRMRYIASQVENKIRIVALSTSLAN-------------------AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVD 1548 (2114)
Q Consensus 1488 ~srl~~i~~~~~~~~riV~lSATl~n-------------------~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~ 1548 (2114)
+++..+.+.+....|+++...++.| +++|..|+..... .. .
T Consensus 306 -s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~-----~~--------------~ 365 (971)
T KOG0385|consen 306 -SKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNC-----EG--------------D 365 (971)
T ss_pred -hHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHccccc-----cc--------------C
Confidence 2222333333445554444444433 3455666654210 00 0
Q ss_pred ccchHHHHHhcCHHH-----HHHHHHHhcCCCCEEEEeCCh--------------------------HHHHHHHHHHHHh
Q 000129 1549 ITNFEARMQAMTKPT-----FTAIVQHAKNEKPALVFVPSR--------------------------KYVRLTAVDLMTY 1597 (2114)
Q Consensus 1549 ~~~~~~~~~~~~~~~-----~~~i~~~l~~~~~~LVFv~sr--------------------------~~a~~la~~L~~~ 1597 (2114)
.....++....+|- ...+...+-+.+-++|||+-. ..-..+...|.+.
T Consensus 366 -~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKc 444 (971)
T KOG0385|consen 366 -QELVSRLHKVLRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKC 444 (971)
T ss_pred -HHHHHHHHhhhhHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHh
Confidence 00001111111110 001111111222233333322 2223334444444
Q ss_pred hccC----Cccc-ccccCC-----C---cccchhhHhhhhH------------------HHHHHHhccceEeecCCCCHH
Q 000129 1598 SSMD----GDQK-SAFLLW-----P---AEEVEPFIDNIQE------------------EMLKATLRHGVGYLHEGLNKT 1646 (2114)
Q Consensus 1598 ~~~~----~~~~-~~~l~~-----~---~~~l~~~~~~i~d------------------~~L~~~l~~gV~~~H~~ls~~ 1646 (2114)
|... +... .+|... . -.-+++++..+.+ +.....-++....+.|.++.+
T Consensus 445 cnHPYLF~g~ePg~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~e 524 (971)
T KOG0385|consen 445 CNHPYLFDGAEPGPPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHE 524 (971)
T ss_pred cCCccccCCCCCCCCCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcH
Confidence 4321 0000 001100 0 0012222333221 111223345577788999999
Q ss_pred HHHHHHHHHhcC---CceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEE
Q 000129 1647 DQEVVSALFEAG---KIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVI 1723 (2114)
Q Consensus 1647 dR~~v~~~F~~g---~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~ii 1723 (2114)
+|...++.|... +.=.|++|...+-|||+-+..+|| -|+.+.++..=+|-+-||-|-|...+-+++.
T Consensus 525 eR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVI----------lyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~R 594 (971)
T KOG0385|consen 525 EREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVI----------LYDSDWNPQVDLQAMDRAHRIGQKKPVVVYR 594 (971)
T ss_pred HHHHHHHhcCCCCcceEEEEEeccccccccccccccEEE----------EecCCCCchhhhHHHHHHHhhCCcCceEEEE
Confidence 999999999864 345789999999999999888888 5777778888889999999988788899999
Q ss_pred EeecCcH
Q 000129 1724 LCHAPRK 1730 (2114)
Q Consensus 1724 l~~~~~~ 1730 (2114)
+++++..
T Consensus 595 LitentV 601 (971)
T KOG0385|consen 595 LITENTV 601 (971)
T ss_pred EeccchH
Confidence 9988753
No 285
>COG4889 Predicted helicase [General function prediction only]
Probab=99.15 E-value=1.6e-10 Score=144.31 Aligned_cols=340 Identities=19% Similarity=0.283 Sum_probs=181.5
Q ss_pred CCCCCCHHHHHHHHHHHcC---CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHH
Q 000129 492 GMTQLNRVQSRVYKSALSS---ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVG 568 (2114)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~---~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~ 568 (2114)
.-++|+|+|+.|++.++++ ++.-=+.+..|+|||..++- |...+.. .+++|++|..+|..|..+
T Consensus 158 ~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala~------------~~iL~LvPSIsLLsQTlr 224 (1518)
T COG4889 158 KPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALAA------------ARILFLVPSISLLSQTLR 224 (1518)
T ss_pred CCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHhh------------hheEeecchHHHHHHHHH
Confidence 4568999999999998764 33333445679999998753 4444433 389999999999999999
Q ss_pred HHHHhhccCCcEEEEEeCCCccChhh----------------------------hccceEEEcCHhHHHHHHhccCCCcc
Q 000129 569 NLSNRLQMYDVKVRELSGDQTLTRQQ----------------------------IEETQIIVTTPEKWDIITRKSGDRTY 620 (2114)
Q Consensus 569 ~~~~~~~~~gi~v~~l~Gd~~~~~~~----------------------------~~~~~IiV~TPek~d~l~r~~~~~~~ 620 (2114)
.|..- +.+.++...+++|...++.. ..+--|+++|...+-.+... ...-
T Consensus 225 ew~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eA--Qe~G 301 (1518)
T COG4889 225 EWTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEA--QEAG 301 (1518)
T ss_pred HHhhc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHH--HHcC
Confidence 99763 34566666666655433210 11334888888765433322 1234
Q ss_pred cccccEEEEeccccccc--CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCce------Eeec
Q 000129 621 TQLVKLLIIDEIHLLHD--NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGL------FYFD 692 (2114)
Q Consensus 621 l~~v~liIiDEaH~l~d--~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~------~~f~ 692 (2114)
+..+++||.||||+-.. .-|.. .+-..|+.. .+.-+..+.+-|+||..-+.+-.+--.......+ ..|+
T Consensus 302 ~~~fDliicDEAHRTtGa~~a~dd-~saFt~vHs--~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fG 378 (1518)
T COG4889 302 LDEFDLIICDEAHRTTGATLAGDD-KSAFTRVHS--DQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFG 378 (1518)
T ss_pred CCCccEEEecchhccccceecccC-cccceeecC--cchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhc
Confidence 56789999999997532 01100 011111100 0011233457788883212111110000000000 0111
Q ss_pred CCccccc---------c---eeEEEeeccCchhHHH-------------HHhhHH--HHHHHHHHhC-------------
Q 000129 693 NSYRPVP---------L---SQQYIGIQVKKPLQRF-------------QLMNDL--CYEKVVAVAG------------- 732 (2114)
Q Consensus 693 ~~~rpv~---------l---~~~~~~~~~~~~~~~~-------------~~~~~~--~~~~i~~~~~------------- 732 (2114)
+.+.... | ..-+..+........+ .....+ ++..+.+..+
T Consensus 379 eef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~a 458 (1518)
T COG4889 379 EEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTA 458 (1518)
T ss_pred hhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCch
Confidence 1111100 0 0001111111000000 000000 1222222111
Q ss_pred -CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhh-hccCceEEec--CCCCHHH
Q 000129 733 -KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD-LLPYGFAIHH--AGMTRGD 808 (2114)
Q Consensus 733 -~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~-ll~~gv~~hH--agl~~~~ 808 (2114)
-.+.|-||.+.+....++..+.... ... +.++++ .....+.+-| |.|...+
T Consensus 459 p~~RAIaF~k~I~tSK~i~~sFe~Vv--------------------e~Y-----~~Elk~d~~nL~iSi~HvDGtmNal~ 513 (1518)
T COG4889 459 PMQRAIAFAKDIKTSKQIAESFETVV--------------------EAY-----DEELKKDFKNLKISIDHVDGTMNALE 513 (1518)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH--------------------HHH-----HHHHHhcCCCceEEeecccccccHHH
Confidence 1235666666666666555443321 000 011111 1223345555 7899999
Q ss_pred HHHHHHH---HhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEE
Q 000129 809 RQLVEDL---FGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885 (2114)
Q Consensus 809 R~~v~~~---F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil 885 (2114)
|...+.. |....++||-..-.|+.|||+|+.+-||- +||.+ |..|++|-+||..|.... +-.+||+
T Consensus 514 R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViF----f~pr~------smVDIVQaVGRVMRKa~g-K~yGYII 582 (1518)
T COG4889 514 RLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIF----FDPRS------SMVDIVQAVGRVMRKAKG-KKYGYII 582 (1518)
T ss_pred HHHHHhccCCCCcchheeeccchhhhcCCCccccceEEE----ecCch------hHHHHHHHHHHHHHhCcC-CccceEE
Confidence 9554443 45678999999999999999999998885 89987 899999999999995432 3344554
Q ss_pred c
Q 000129 886 T 886 (2114)
Q Consensus 886 ~ 886 (2114)
.
T Consensus 583 L 583 (1518)
T COG4889 583 L 583 (1518)
T ss_pred E
Confidence 3
No 286
>COG4889 Predicted helicase [General function prediction only]
Probab=99.15 E-value=1.4e-10 Score=144.84 Aligned_cols=341 Identities=18% Similarity=0.259 Sum_probs=180.1
Q ss_pred CCCCCHHHHHHHHHHHc---CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000129 1339 FKHFNPIQTQVFTVLYN---TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~---~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~ 1415 (2114)
-+.|+|+|++|+++.++ .++.-=+....|+|||..+ |-|.+.+.. . ++||++|+.+|..|+.+.|...-
T Consensus 159 ~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTs-LkisEala~----~--~iL~LvPSIsLLsQTlrew~~~~- 230 (1518)
T COG4889 159 PKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTS-LKISEALAA----A--RILFLVPSISLLSQTLREWTAQK- 230 (1518)
T ss_pred CCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchH-HHHHHHHhh----h--heEeecchHHHHHHHHHHHhhcc-
Confidence 46899999999999865 2333445566799999987 445554443 2 89999999999999999998532
Q ss_pred CCCCcEEEEEcCCcccc------------------h-------hhccCC---cEEEEChhhHHHHHhhhcccccccceeE
Q 000129 1416 QGLGMRVVELTGETAMD------------------L-------KLLEKG---QIIISTPEKWDALSRRWKQRKYVQQVSL 1467 (2114)
Q Consensus 1416 ~~~g~~v~~l~G~~~~~------------------~-------~~l~~~---~IIV~TPe~l~~l~r~~~~~~~l~~v~l 1467 (2114)
.+.++...++++.... . +..+++ -||++|.+.+..+-.. +..-+..+++
T Consensus 231 -~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eA--Qe~G~~~fDl 307 (1518)
T COG4889 231 -ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEA--QEAGLDEFDL 307 (1518)
T ss_pred -CccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHH--HHcCCCCccE
Confidence 2355555554433211 0 011122 5888998887655443 4556889999
Q ss_pred EEecccccccCC--CCchHHHHHHHHHHHHhhcCCCceEEEEcccCCChhHHH-HHhcCCCCce---------------e
Q 000129 1468 FIIDELHLIGGQ--GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLG-EWIGATSHGL---------------F 1529 (2114)
Q Consensus 1468 iIiDEaH~l~~~--~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~dla-~wl~~~~~~~---------------~ 1529 (2114)
||.||||+--+. .|.. +....++.. .+.-+..+.+-|+||+-=..+-+ .-.......+ .
T Consensus 308 iicDEAHRTtGa~~a~dd-~saFt~vHs--~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~rl 384 (1518)
T COG4889 308 IICDEAHRTTGATLAGDD-KSAFTRVHS--DQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHRL 384 (1518)
T ss_pred EEecchhccccceecccC-cccceeecC--cchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhcc
Confidence 999999954321 0100 001111100 00012234466777762110000 0000000000 0
Q ss_pred ecCCCCCc---cCcEEEEecccccchHHHHHh------------cCHH---HHHHHHHHhc-------------CCCCEE
Q 000129 1530 NFPPGVRP---VPLEIHIQGVDITNFEARMQA------------MTKP---TFTAIVQHAK-------------NEKPAL 1578 (2114)
Q Consensus 1530 ~f~~~~rp---v~l~~~~~~~~~~~~~~~~~~------------~~~~---~~~~i~~~l~-------------~~~~~L 1578 (2114)
.|...+.. ..-.+.+...+.......+.. +... +...+...-. +..++|
T Consensus 385 ~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAI 464 (1518)
T COG4889 385 GFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAI 464 (1518)
T ss_pred cHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHHH
Confidence 11100000 000111111111111111100 0000 0111111100 012356
Q ss_pred EEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEe--ecCCCCHHHHHHHHHH--
Q 000129 1579 VFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGY--LHEGLNKTDQEVVSAL-- 1654 (2114)
Q Consensus 1579 VFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~--~H~~ls~~dR~~v~~~-- 1654 (2114)
-||.+.+....++..+-. -++.+...+. .......|.+ ..|.|...+|...+.+
T Consensus 465 aF~k~I~tSK~i~~sFe~------------------Vve~Y~~Elk----~d~~nL~iSi~HvDGtmNal~R~~l~~l~~ 522 (1518)
T COG4889 465 AFAKDIKTSKQIAESFET------------------VVEAYDEELK----KDFKNLKISIDHVDGTMNALERLDLLELKN 522 (1518)
T ss_pred HHHHhhHHHHHHHHHHHH------------------HHHHHHHHHH----hcCCCceEEeecccccccHHHHHHHHhccC
Confidence 677766666666544421 1222222221 1123333444 4477999998555443
Q ss_pred -HhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCC-CCceEEEEEe
Q 000129 1655 -FEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLL-DNSGKCVILC 1725 (2114)
Q Consensus 1655 -F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~-~~~G~~iil~ 1725 (2114)
|...+.+||---..++.|||+|+..-|| +|+++ .+..+++|-+||..|..- ...|..++=+
T Consensus 523 ~~~~neckIlSNaRcLSEGVDVPaLDsVi----Ff~pr------~smVDIVQaVGRVMRKa~gK~yGYIILPI 585 (1518)
T COG4889 523 TFEPNECKILSNARCLSEGVDVPALDSVI----FFDPR------SSMVDIVQAVGRVMRKAKGKKYGYIILPI 585 (1518)
T ss_pred CCCcchheeeccchhhhcCCCccccceEE----EecCc------hhHHHHHHHHHHHHHhCcCCccceEEEEe
Confidence 3567889999999999999999999999 56655 378999999999999532 2346555543
No 287
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.15 E-value=6.3e-09 Score=135.79 Aligned_cols=127 Identities=17% Similarity=0.105 Sum_probs=96.0
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.+.++|--.--. ++.+ -|..+.||-|||+++.+|+.-....++ .|-+|++..-||..=++.+...+
T Consensus 85 r~ydVQliGgl~-Lh~G--~IAEM~TGEGKTL~atlpaylnAL~Gk-----------gVhVVTvNdYLA~RDae~m~~vy 150 (939)
T PRK12902 85 RHFDVQLIGGMV-LHEG--QIAEMKTGEGKTLVATLPSYLNALTGK-----------GVHVVTVNDYLARRDAEWMGQVH 150 (939)
T ss_pred CcchhHHHhhhh-hcCC--ceeeecCCCChhHHHHHHHHHHhhcCC-----------CeEEEeCCHHHHHhHHHHHHHHH
Confidence 566777665443 3333 588999999999999999876655432 58899999999999999999999
Q ss_pred ccCCcEEEEEeCCCccChh-hhccceEEEcCHhHH--HHHHhcc---CCCcccccccEEEEeccccc
Q 000129 575 QMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW--DIITRKS---GDRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~-~~~~~~IiV~TPek~--d~l~r~~---~~~~~l~~v~liIiDEaH~l 635 (2114)
..+|++|+...++.+...+ ..-.++|+++|+..+ |.|.-+. ........+.+.||||||.+
T Consensus 151 ~~LGLtvg~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSI 217 (939)
T PRK12902 151 RFLGLSVGLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSI 217 (939)
T ss_pred HHhCCeEEEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccce
Confidence 9999999999887665443 345899999999885 4443332 11234567889999999965
No 288
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.12 E-value=2.6e-09 Score=145.48 Aligned_cols=71 Identities=24% Similarity=0.242 Sum_probs=58.6
Q ss_pred CCCCCHHHHHHHHH---HHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000129 493 MTQLNRVQSRVYKS---ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (2114)
Q Consensus 493 ~~~l~~iQ~~~i~~---~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~ 569 (2114)
..++++.|.+.+.. ++.++..+++.||||+|||+.|++|++....... .+++|.++|++|-.|..++
T Consensus 13 ~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~----------~~viist~t~~lq~q~~~~ 82 (654)
T COG1199 13 GFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEG----------KKVIISTRTKALQEQLLEE 82 (654)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcC----------CcEEEECCCHHHHHHHHHh
Confidence 45899999988754 4666677999999999999999999998875542 4799999999999999887
Q ss_pred HHHh
Q 000129 570 LSNR 573 (2114)
Q Consensus 570 ~~~~ 573 (2114)
....
T Consensus 83 ~~~~ 86 (654)
T COG1199 83 DLPI 86 (654)
T ss_pred hcch
Confidence 6553
No 289
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.08 E-value=1.7e-08 Score=136.22 Aligned_cols=63 Identities=21% Similarity=0.138 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHHHH---cC-----CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHH
Q 000129 1341 HFNPIQTQVFTVLY---NT-----DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il---~~-----~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~ 1407 (2114)
.+++-|.+....++ .+ +..++|-||||+|||++|++|.+..... .+. ++||-+.|++|-.|+.
T Consensus 25 e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~--~~k--~vVIST~T~~LQeQL~ 95 (697)
T PRK11747 25 IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARA--EKK--KLVISTATVALQEQLV 95 (697)
T ss_pred CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHH--cCC--eEEEEcCCHHHHHHHH
Confidence 68999998666554 44 3668899999999999999999865554 244 8999999999999986
No 290
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.07 E-value=3e-09 Score=144.81 Aligned_cols=69 Identities=19% Similarity=0.244 Sum_probs=57.2
Q ss_pred CCCCCHHHHHHHHHH---HcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHH
Q 000129 1339 FKHFNPIQTQVFTVL---YNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~i---l~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~ 1411 (2114)
...+++.|.+....+ +.++..+++.||||+|||+.|++|++...... +. +++|.++|+.|-.|..++..
T Consensus 13 ~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~--~~--~viist~t~~lq~q~~~~~~ 84 (654)
T COG1199 13 GFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREE--GK--KVIISTRTKALQEQLLEEDL 84 (654)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHc--CC--cEEEECCCHHHHHHHHHhhc
Confidence 558999999887764 55667799999999999999999999776652 23 89999999999999877644
No 291
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.07 E-value=8.9e-09 Score=128.89 Aligned_cols=327 Identities=20% Similarity=0.259 Sum_probs=188.2
Q ss_pred CCCCHHHHHHHHH---HHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 494 TQLNRVQSRVYKS---ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~---~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
..|+++|.+-+.- .++++-|.|+.-.-|=|||+... +.+-.+.....-.| --+|++|.--| ..+.++|
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtI-s~l~yl~~~~~~~G-------PfLVi~P~StL-~NW~~Ef 236 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTI-SLLGYLKGRKGIPG-------PFLVIAPKSTL-DNWMNEF 236 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHH-HHHHHHHHhcCCCC-------CeEEEeeHhhH-HHHHHHH
Confidence 3788999887764 45666789999999999998753 33333333222112 35789998776 5677788
Q ss_pred HHhhccCCcEEEEEeCCCccChhh------hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHH
Q 000129 571 SNRLQMYDVKVRELSGDQTLTRQQ------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLE 644 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~------~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le 644 (2114)
+++.. +++|..++||....... ....+|+|||.|.. .+... ...--..+++||||+|++....
T Consensus 237 ~rf~P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~---i~dk~-~lk~~~W~ylvIDEaHRiKN~~----- 305 (971)
T KOG0385|consen 237 KRFTP--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIA---IKDKS-FLKKFNWRYLVIDEAHRIKNEK----- 305 (971)
T ss_pred HHhCC--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHH---HhhHH-HHhcCCceEEEechhhhhcchh-----
Confidence 77644 78999999986432211 23789999999963 22110 0011125899999999986432
Q ss_pred HHHHHHHHHHhhccccccEEEEcccc----------------C----ChHHHHHHHhccccCce----EeecCCcccc--
Q 000129 645 SIVARTVRQIETTKEHIRLVGLSATL----------------P----NYEDVALFLRVNLEKGL----FYFDNSYRPV-- 698 (2114)
Q Consensus 645 ~iv~rl~~~~~~~~~~~riv~lSATl----------------p----n~~dva~~l~~~~~~~~----~~f~~~~rpv-- 698 (2114)
+.+.++++.. ... .-+++|.|. | ..+++..|+......+. .......+|-
T Consensus 306 s~L~~~lr~f---~~~-nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlL 381 (971)
T KOG0385|consen 306 SKLSKILREF---KTD-NRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLL 381 (971)
T ss_pred hHHHHHHHHh---ccc-ceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHH
Confidence 2333443332 222 347788881 1 23566666643210000 0000000000
Q ss_pred ------------ccee--EEEeec-------------------cCch--hHHH-HH---hhH------------------
Q 000129 699 ------------PLSQ--QYIGIQ-------------------VKKP--LQRF-QL---MND------------------ 721 (2114)
Q Consensus 699 ------------~l~~--~~~~~~-------------------~~~~--~~~~-~~---~~~------------------ 721 (2114)
|... .+++.. .... ..++ +. +.+
T Consensus 382 RR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyt 461 (971)
T KOG0385|consen 382 RRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYT 461 (971)
T ss_pred HHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCC
Confidence 0000 111100 0000 0000 00 011
Q ss_pred ------------HHHHHHHHH--hCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcc
Q 000129 722 ------------LCYEKVVAV--AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSN 787 (2114)
Q Consensus 722 ------------~~~~~i~~~--~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~ 787 (2114)
.+.++++.. ..+++||||..-.+ +-..|.+.+.
T Consensus 462 tdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~----mLDILeDyc~----------------------------- 508 (971)
T KOG0385|consen 462 TDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTR----MLDILEDYCM----------------------------- 508 (971)
T ss_pred cchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHH----HHHHHHHHHH-----------------------------
Confidence 112222221 23779999964222 2223332221
Q ss_pred hhhhhccCceEEecCCCCHHHHHHHHHHHhCC---CceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHH
Q 000129 788 DLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDG---HVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDI 864 (2114)
Q Consensus 788 ~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g---~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~ 864 (2114)
+..+...-..|.++.++|...++.|... ..-.|++|-+.+-|||+-+.++||-++.-|||.. =
T Consensus 509 ----~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~----------D 574 (971)
T KOG0385|consen 509 ----LRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQV----------D 574 (971)
T ss_pred ----hcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchh----------h
Confidence 1122334458999999999999999753 4557899999999999999999998776676653 5
Q ss_pred HHhhcccCCCCCCCceEEEEEcCCCcH
Q 000129 865 MQMLGRAGRPQYDSYGEGIIITGHSEL 891 (2114)
Q Consensus 865 ~Qr~GRAGR~g~d~~G~~iil~~~~e~ 891 (2114)
+|-+-||-|-|..+.-.+|.+++.+..
T Consensus 575 LQAmDRaHRIGQ~K~V~V~RLitentV 601 (971)
T KOG0385|consen 575 LQAMDRAHRIGQKKPVVVYRLITENTV 601 (971)
T ss_pred hHHHHHHHhhCCcCceEEEEEeccchH
Confidence 677777777777788888988888654
No 292
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.01 E-value=2.8e-08 Score=129.36 Aligned_cols=367 Identities=18% Similarity=0.139 Sum_probs=206.3
Q ss_pred CCCCHHHHHHHHHHHcC---------CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHH
Q 000129 494 TQLNRVQSRVYKSALSS---------ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~---------~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~ 564 (2114)
..++|+|.+.+.-++.. ..-+|+.=..|+|||+...-.|...+.+++.... ---+.+||+| ..|+.
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~----~~~k~lVV~P-~sLv~ 311 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKP----LINKPLVVAP-SSLVN 311 (776)
T ss_pred hhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccc----cccccEEEcc-HHHHH
Confidence 47899999999866532 1126677778999999887777667776653211 1137899999 58899
Q ss_pred HHHHHHHHhhccCCcEEEEEeCCCccCh---h-------hhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccc
Q 000129 565 EVVGNLSNRLQMYDVKVRELSGDQTLTR---Q-------QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL 634 (2114)
Q Consensus 565 q~~~~~~~~~~~~gi~v~~l~Gd~~~~~---~-------~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~ 634 (2114)
-+.++|.+++....+.+..++|...... . ..-...|.+.+.|.+....+. .....++++|+||.|.
T Consensus 312 nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~----il~~~~glLVcDEGHr 387 (776)
T KOG0390|consen 312 NWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK----ILLIRPGLLVCDEGHR 387 (776)
T ss_pred HHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH----HhcCCCCeEEECCCCC
Confidence 9999999988766677777887765310 0 112456788888876322222 3455689999999999
Q ss_pred cccCCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhcc-cc-CceEeecCCccc----ccceeEE--Ee
Q 000129 635 LHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN-LE-KGLFYFDNSYRP----VPLSQQY--IG 706 (2114)
Q Consensus 635 l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~-~~-~~~~~f~~~~rp----v~l~~~~--~~ 706 (2114)
+-....-.+.. +++ . .-.|-|+||.|+= -.++.+++..- .. .+.+--..+++. ..+...- ..
T Consensus 388 lkN~~s~~~ka-L~~-------l-~t~rRVLLSGTp~-QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s 457 (776)
T KOG0390|consen 388 LKNSDSLTLKA-LSS-------L-KTPRRVLLTGTPI-QNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADAS 457 (776)
T ss_pred ccchhhHHHHH-HHh-------c-CCCceEEeeCCcc-cccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcc
Confidence 86544332222 222 2 3445689999943 23455544321 00 011100111110 0000000 00
Q ss_pred eccCchhHHHHHhhHHHHH--------HHHHHhCC-CeEEEEecChHHHHHHHHHHHHHh---------hc--------c
Q 000129 707 IQVKKPLQRFQLMNDLCYE--------KVVAVAGK-HQVLIFVHSRKETAKTARAIRDTA---------LE--------N 760 (2114)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~--------~i~~~~~~-~~vLVFv~sr~~~~~~a~~L~~~~---------~~--------~ 760 (2114)
-.......+++.|..++-. .+.+++++ .-.+|||+.-..=..+...|.+.. .. +
T Consensus 458 ~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~c 537 (776)
T KOG0390|consen 458 EEDREREERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLC 537 (776)
T ss_pred hhhhhhHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHh
Confidence 0000112223333333222 22233332 357889987655555555444420 00 0
Q ss_pred --cccc----------cccc-----------cC--ch--hH--HHHHhhh----cc-------cCc--------chhhhh
Q 000129 761 --DTLG----------RFLK-----------ED--SV--SR--EILQSHT----DM-------VKS--------NDLKDL 792 (2114)
Q Consensus 761 --~~l~----------~~l~-----------~~--~~--~~--~~l~~~~----~~-------~~~--------~~L~~l 792 (2114)
..+- .+.. .+ .. +. -.|...+ +. +.+ ..+...
T Consensus 538 nhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~ 617 (776)
T KOG0390|consen 538 NHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRW 617 (776)
T ss_pred cCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhh
Confidence 0000 0000 00 00 00 0000000 00 000 122233
Q ss_pred ccCceEEecCCCCHHHHHHHHHHHhCCC--ce-EEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhc
Q 000129 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGH--VQ-VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLG 869 (2114)
Q Consensus 793 l~~gv~~hHagl~~~~R~~v~~~F~~g~--i~-VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~G 869 (2114)
..+.+..+||.|+..+|+.+.+.|.+-. .. .|.+|-+.+.|+|+=+.+-||.++..|||. .=.|-++
T Consensus 618 ~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa----------~d~QAma 687 (776)
T KOG0390|consen 618 RGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPA----------VDQQAMA 687 (776)
T ss_pred cCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCch----------hHHHHHH
Confidence 3567778899999999999999997533 23 456778899999999888888877777765 3789999
Q ss_pred ccCCCCCCCceEEEEEcCCC
Q 000129 870 RAGRPQYDSYGEGIIITGHS 889 (2114)
Q Consensus 870 RAGR~g~d~~G~~iil~~~~ 889 (2114)
||=|+|..+.-..|.+....
T Consensus 688 R~~RdGQKk~v~iYrLlatG 707 (776)
T KOG0390|consen 688 RAWRDGQKKPVYIYRLLATG 707 (776)
T ss_pred HhccCCCcceEEEEEeecCC
Confidence 99999977666666666553
No 293
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.98 E-value=1.2e-07 Score=129.23 Aligned_cols=75 Identities=20% Similarity=0.243 Sum_probs=60.8
Q ss_pred CCCCCCCHHHHHHHHHH---HcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSA---LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~---l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~ 567 (2114)
..|..++|.|.+....+ +..++++++.||||+|||++.+.+.+....... ...|++|.+.|.+=..|..
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~--------~~~kIiy~sRThsQl~q~i 77 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP--------EVRKIIYASRTHSQLEQAT 77 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc--------ccccEEEEcccchHHHHHH
Confidence 34778899999987765 556788999999999999999999998765432 2248999999999888888
Q ss_pred HHHHHh
Q 000129 568 GNLSNR 573 (2114)
Q Consensus 568 ~~~~~~ 573 (2114)
+++++.
T Consensus 78 ~Elk~~ 83 (705)
T TIGR00604 78 EELRKL 83 (705)
T ss_pred HHHHhh
Confidence 888773
No 294
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.97 E-value=5.2e-08 Score=126.90 Aligned_cols=127 Identities=20% Similarity=0.119 Sum_probs=83.6
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.++++|--.--.+ +.+ -|.-..||-|||+++.+|++-.... +. .+-+++..--||..=+..+. .+-..+|+
T Consensus 78 r~ydVQliGglvL-h~G--~IAEMkTGEGKTLvAtLpayLnAL~---Gk--gVhVVTvNdYLA~RDae~mg-~vy~fLGL 148 (925)
T PRK12903 78 RPYDVQIIGGIIL-DLG--SVAEMKTGEGKTITSIAPVYLNALT---GK--GVIVSTVNEYLAERDAEEMG-KVFNFLGL 148 (925)
T ss_pred CcCchHHHHHHHH-hcC--CeeeecCCCCccHHHHHHHHHHHhc---CC--ceEEEecchhhhhhhHHHHH-HHHHHhCC
Confidence 4556665544333 323 4789999999999999988644443 33 45677777788876555444 34445799
Q ss_pred EEEEEcCCcccc-hhhccCCcEEEEChhhHH-HHHhhhc----ccccccceeEEEecccccc
Q 000129 1421 RVVELTGETAMD-LKLLEKGQIIISTPEKWD-ALSRRWK----QRKYVQQVSLFIIDELHLI 1476 (2114)
Q Consensus 1421 ~v~~l~G~~~~~-~~~l~~~~IIV~TPe~l~-~l~r~~~----~~~~l~~v~liIiDEaH~l 1476 (2114)
+|++...+.+.. .+..-.+||.++|...|- ..+|... .......+.+.||||+|.+
T Consensus 149 svG~i~~~~~~~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSI 210 (925)
T PRK12903 149 SVGINKANMDPNLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSI 210 (925)
T ss_pred ceeeeCCCCChHHHHHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhe
Confidence 999998876554 334446799999998762 2344211 1123456789999999954
No 295
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.96 E-value=9.4e-08 Score=124.61 Aligned_cols=369 Identities=17% Similarity=0.157 Sum_probs=198.1
Q ss_pred CCCCCHHHHHHHHHHHc---------CCCcEEEEecCCCchHHHHHHHHHHHhhhccCC-----CceEEEEEcccHHHHH
Q 000129 1339 FKHFNPIQTQVFTVLYN---------TDDNVLVAAPTGSGKTICSEFAILRNHQKASET-----GVMRAVYIAPLEALAK 1404 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~---------~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~-----~~~k~l~I~Ptr~La~ 1404 (2114)
...++|+|.+.|.-++. +..-.|++=..|+|||+...-.|...+.+ .+. . ++|||+|. .|+.
T Consensus 236 ~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq-~P~~~~~~~--k~lVV~P~-sLv~ 311 (776)
T KOG0390|consen 236 KKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQ-FPQAKPLIN--KPLVVAPS-SLVN 311 (776)
T ss_pred hhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHh-CcCcccccc--ccEEEccH-HHHH
Confidence 35789999999998764 11226777788999999885555555555 455 4 88999995 5555
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcCCcccch---h-hc------cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccc
Q 000129 1405 ERYRDWEIKFGQGLGMRVVELTGETAMDL---K-LL------EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELH 1474 (2114)
Q Consensus 1405 q~~~~~~~~f~~~~g~~v~~l~G~~~~~~---~-~l------~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH 1474 (2114)
-++++|.+-.+. ..+.+..+.|.....+ + .+ -..-|.+.+.+.+....+. .....++++|+||.|
T Consensus 312 nWkkEF~KWl~~-~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~----il~~~~glLVcDEGH 386 (776)
T KOG0390|consen 312 NWKKEFGKWLGN-HRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK----ILLIRPGLLVCDEGH 386 (776)
T ss_pred HHHHHHHHhccc-cccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH----HhcCCCCeEEECCCC
Confidence 555555532221 1344555556544310 0 00 1125667777776544433 456789999999999
Q ss_pred cccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhcCC---CCceeecCCCCCccCcEEEEeccccc-
Q 000129 1475 LIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGAT---SHGLFNFPPGVRPVPLEIHIQGVDIT- 1550 (2114)
Q Consensus 1475 ~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~---~~~~~~f~~~~rpv~l~~~~~~~~~~- 1550 (2114)
.+-+..+.++. ....+. -.|-|+||.|+- ..++.+++..- ..+++.-..+.+..--.....+-+..
T Consensus 387 rlkN~~s~~~k--------aL~~l~-t~rRVLLSGTp~-QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~ 456 (776)
T KOG0390|consen 387 RLKNSDSLTLK--------ALSSLK-TPRRVLLTGTPI-QNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADA 456 (776)
T ss_pred CccchhhHHHH--------HHHhcC-CCceEEeeCCcc-cccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCc
Confidence 98765422222 222223 345578888873 23455555332 11111100000000000000000000
Q ss_pred ---ch--HHH---HHhcCHHH-----HHHHHHHhcCCC-CEEEEeCChHHHHHHHHHHHHh-------------------
Q 000129 1551 ---NF--EAR---MQAMTKPT-----FTAIVQHAKNEK-PALVFVPSRKYVRLTAVDLMTY------------------- 1597 (2114)
Q Consensus 1551 ---~~--~~~---~~~~~~~~-----~~~i~~~l~~~~-~~LVFv~sr~~a~~la~~L~~~------------------- 1597 (2114)
.. ..+ +..|.... -..+..+ -+++ -.+|||+.-..-..+...|...
T Consensus 457 s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~-LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k 535 (776)
T KOG0390|consen 457 SEEDREREERLQELRELTNKFILRRTGDILLKY-LPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKK 535 (776)
T ss_pred chhhhhhHHHHHHHHHHHHhheeecccchhhhh-CCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHH
Confidence 00 111 11111100 0112223 2332 3788888765444444444332
Q ss_pred -hccCCc--------ccccccC-----------CCccc---------chhhHhhhhH-------------------HHHH
Q 000129 1598 -SSMDGD--------QKSAFLL-----------WPAEE---------VEPFIDNIQE-------------------EMLK 1629 (2114)
Q Consensus 1598 -~~~~~~--------~~~~~l~-----------~~~~~---------l~~~~~~i~d-------------------~~L~ 1629 (2114)
|..... ....+.+ ....+ +..++..+.. +.+.
T Consensus 536 ~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~ 615 (776)
T KOG0390|consen 536 LCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLC 615 (776)
T ss_pred HhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHH
Confidence 110000 0000000 00000 0011111110 2233
Q ss_pred HHhccceEeecCCCCHHHHHHHHHHHhcCCc--e-EEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHh
Q 000129 1630 ATLRHGVGYLHEGLNKTDQEVVSALFEAGKI--K-VCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQM 1706 (2114)
Q Consensus 1630 ~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i--~-VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr 1706 (2114)
...++.+..+||.|+..+|..+.+.|.+..- . .|.+|.+.+.|||+-+..-|| -++.+.+++.=.|-
T Consensus 616 ~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRli----------l~D~dWNPa~d~QA 685 (776)
T KOG0390|consen 616 RWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLI----------LFDPDWNPAVDQQA 685 (776)
T ss_pred hhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEE----------EeCCCCCchhHHHH
Confidence 3446779999999999999999999986432 3 566677889999987666555 37888899999999
Q ss_pred HcccCCCCCCCceEEEEEeecC--cHHHHHHHH
Q 000129 1707 MGHASRPLLDNSGKCVILCHAP--RKEYYKKFL 1737 (2114)
Q Consensus 1707 ~GRAGR~~~~~~G~~iil~~~~--~~~~~~~~l 1737 (2114)
++||=|+|....-.+|.|.... ++..|.+-.
T Consensus 686 maR~~RdGQKk~v~iYrLlatGtiEEk~~qrq~ 718 (776)
T KOG0390|consen 686 MARAWRDGQKKPVYIYRLLATGTIEEKIYQRQT 718 (776)
T ss_pred HHHhccCCCcceEEEEEeecCCCchHHHHHHHH
Confidence 9999999887888888887765 344554433
No 296
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=98.94 E-value=1.7e-09 Score=105.03 Aligned_cols=72 Identities=32% Similarity=0.583 Sum_probs=64.2
Q ss_pred cCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCC
Q 000129 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2114)
Q Consensus 794 ~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2114)
...+..+||+|+..+|..+++.|.+|..+|||+|+++++|+|+|.+..||. ++++ .+..+|.||+||+||
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~----~~~~------~~~~~~~Q~~gR~~R 80 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVII----YDLP------WSPASYIQRIGRAGR 80 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEE----eCCC------CCHHHHHHhhccccc
Confidence 456889999999999999999999999999999999999999998888886 4443 377889999999999
Q ss_pred CC
Q 000129 874 PQ 875 (2114)
Q Consensus 874 ~g 875 (2114)
.|
T Consensus 81 ~g 82 (82)
T smart00490 81 AG 82 (82)
T ss_pred CC
Confidence 64
No 297
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.91 E-value=2.6e-07 Score=110.81 Aligned_cols=152 Identities=18% Similarity=0.209 Sum_probs=99.3
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000129 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2114)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (2114)
+..|-|+|.+-+.-+++.+..+++.-.-|-|||..|+- |....... .-.++|+|- +|-..+.+.+.+
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAla-IA~yyraE-----------wplliVcPA-svrftWa~al~r 262 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALA-IARYYRAE-----------WPLLIVCPA-SVRFTWAKALNR 262 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHH-HHHHHhhc-----------CcEEEEecH-HHhHHHHHHHHH
Confidence 34677999999999999988899999999999999854 44433221 147889996 455667777777
Q ss_pred hhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHH
Q 000129 573 RLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVR 652 (2114)
Q Consensus 573 ~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~ 652 (2114)
+|.... .+..+.+..+.-...-....|.|.+.+.+..+..... -...++||+||.|+|.+.+......++.
T Consensus 263 ~lps~~-pi~vv~~~~D~~~~~~t~~~v~ivSye~ls~l~~~l~----~~~~~vvI~DEsH~Lk~sktkr~Ka~~d---- 333 (689)
T KOG1000|consen 263 FLPSIH-PIFVVDKSSDPLPDVCTSNTVAIVSYEQLSLLHDILK----KEKYRVVIFDESHMLKDSKTKRTKAATD---- 333 (689)
T ss_pred hccccc-ceEEEecccCCccccccCCeEEEEEHHHHHHHHHHHh----cccceEEEEechhhhhccchhhhhhhhh----
Confidence 765332 2444444433322222245688888887644433221 2236899999999998754333333322
Q ss_pred HHhhccccccEEEEccc
Q 000129 653 QIETTKEHIRLVGLSAT 669 (2114)
Q Consensus 653 ~~~~~~~~~riv~lSAT 669 (2114)
-...-.++|+||.|
T Consensus 334 ---llk~akhvILLSGT 347 (689)
T KOG1000|consen 334 ---LLKVAKHVILLSGT 347 (689)
T ss_pred ---HHHHhhheEEecCC
Confidence 12345678999999
No 298
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.91 E-value=2.1e-07 Score=117.72 Aligned_cols=371 Identities=17% Similarity=0.186 Sum_probs=201.2
Q ss_pred CCCCCHHHHHHHHHHH---cCCCcEEEEecCCCchHHHH--HHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHH
Q 000129 1339 FKHFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICS--EFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIK 1413 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il---~~~~nvli~ApTGSGKTl~~--~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~ 1413 (2114)
+..+.|+|+..+.-++ ..+.--|++-.-|=|||+.. .|+.+.+-. .-.+ .+|||||. .++.|+.++|. .
T Consensus 203 ~~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~--k~~~--paLIVCP~-Tii~qW~~E~~-~ 276 (923)
T KOG0387|consen 203 WSKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSG--KLTK--PALIVCPA-TIIHQWMKEFQ-T 276 (923)
T ss_pred HHHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcc--cccC--ceEEEccH-HHHHHHHHHHH-H
Confidence 4578899999988765 34444789999999999653 344443331 1234 89999996 57788899888 4
Q ss_pred hcCCCCcEEEEEcCCccc------------c----hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEeccccccc
Q 000129 1414 FGQGLGMRVVELTGETAM------------D----LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (2114)
Q Consensus 1414 f~~~~g~~v~~l~G~~~~------------~----~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~ 1477 (2114)
+.. ..+|.+++|..+. + ......+.|+|+|.+.+- .......--..+++|+||.|.|-
T Consensus 277 w~p--~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r----~~~d~l~~~~W~y~ILDEGH~Ir 350 (923)
T KOG0387|consen 277 WWP--PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFR----IQGDDLLGILWDYVILDEGHRIR 350 (923)
T ss_pred hCc--ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhc----ccCcccccccccEEEecCccccc
Confidence 543 4688888875542 1 112235589999987642 21111111245899999999997
Q ss_pred CCCCchHHHHHHHHHHHHhhcCCCceEEEEcccC-CC-hhHHHHHhcCCCCcee----ecCCCCCccCcEEEEecccc-c
Q 000129 1478 GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSL-AN-AKDLGEWIGATSHGLF----NFPPGVRPVPLEIHIQGVDI-T 1550 (2114)
Q Consensus 1478 ~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl-~n-~~dla~wl~~~~~~~~----~f~~~~rpv~l~~~~~~~~~-~ 1550 (2114)
+..... .+ .+.++...-||| ||.|+ .| ..++-..+.-...+.. .|... ..+|+.. -++.. +
T Consensus 351 Npns~i---sl-----ackki~T~~RiI-LSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~-f~~pI~~--GgyaNAs 418 (923)
T KOG0387|consen 351 NPNSKI---SL-----ACKKIRTVHRII-LSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQN-FEHPINR--GGYANAS 418 (923)
T ss_pred CCccHH---HH-----HHHhccccceEE-eeCccccchHHHHHHHhhhccCCcccchHHHHhh-hhhheec--cccCCCC
Confidence 654222 22 122334455554 55554 44 2333322211110000 01110 1112211 11111 1
Q ss_pred chHHH----HH----hcCHH-----HHHHHHH-HhcCCCCEEEEeCChHHHHHHHHHHHHh-------------------
Q 000129 1551 NFEAR----MQ----AMTKP-----TFTAIVQ-HAKNEKPALVFVPSRKYVRLTAVDLMTY------------------- 1597 (2114)
Q Consensus 1551 ~~~~~----~~----~~~~~-----~~~~i~~-~l~~~~~~LVFv~sr~~a~~la~~L~~~------------------- 1597 (2114)
..... .. ....| ....+.. .+....-.++||.--..-+.+++.+.+.
T Consensus 419 ~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~i 498 (923)
T KOG0387|consen 419 PRQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDI 498 (923)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHH
Confidence 11000 00 01111 1111111 2223344899998766666666655321
Q ss_pred ----hccCCccccc---ccCCCcc--------cchhhHhhhhH------------------HHHHHHh----ccceEeec
Q 000129 1598 ----SSMDGDQKSA---FLLWPAE--------EVEPFIDNIQE------------------EMLKATL----RHGVGYLH 1640 (2114)
Q Consensus 1598 ----~~~~~~~~~~---~l~~~~~--------~l~~~~~~i~d------------------~~L~~~l----~~gV~~~H 1640 (2114)
|...+.-.+. ....+.. .++-+...+.+ ..+..++ ++....+.
T Consensus 499 LrkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmD 578 (923)
T KOG0387|consen 499 LRKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMD 578 (923)
T ss_pred HHhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEec
Confidence 1110000000 0000000 01111111100 1222333 34456678
Q ss_pred CCCCHHHHHHHHHHHhcCCc--eEEEecCccccccCCCCc-EEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCC
Q 000129 1641 EGLNKTDQEVVSALFEAGKI--KVCVMSSSMCWGVPLTAH-LVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDN 1717 (2114)
Q Consensus 1641 ~~ls~~dR~~v~~~F~~g~i--~VLVaT~~la~Gvdip~~-~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~ 1717 (2114)
|..+...|....+.|.++.. =.|++|.+..-|+|+-+. +||| ++.+.++..=.|-.-||=|.|...
T Consensus 579 GtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVII-----------fDPdWNPStD~QAreRawRiGQkk 647 (923)
T KOG0387|consen 579 GTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVII-----------FDPDWNPSTDNQARERAWRIGQKK 647 (923)
T ss_pred CCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEE-----------ECCCCCCccchHHHHHHHhhcCcc
Confidence 99999999999999997753 367889999999999854 5555 666677777788888888887667
Q ss_pred ceEEEEEeecCc-------HHHHHHHH--HhccCCC
Q 000129 1718 SGKCVILCHAPR-------KEYYKKFL--RLTQNPN 1744 (2114)
Q Consensus 1718 ~G~~iil~~~~~-------~~~~~~~l--Rl~~nP~ 1744 (2114)
.-.+|.|..... +..|+.+| |++.||.
T Consensus 648 dV~VYRL~t~gTIEEkiY~rQI~Kq~Ltn~il~~p~ 683 (923)
T KOG0387|consen 648 DVVVYRLMTAGTIEEKIYHRQIFKQFLTNRILKNPE 683 (923)
T ss_pred ceEEEEEecCCcHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 777788877653 23456666 7777774
No 299
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=98.90 E-value=3.1e-09 Score=103.15 Aligned_cols=71 Identities=28% Similarity=0.390 Sum_probs=65.9
Q ss_pred ccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCC
Q 000129 1633 RHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASR 1712 (2114)
Q Consensus 1633 ~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR 1712 (2114)
..++..+||+++..+|..+++.|++|...|||+|+++++|+|+|.+..|| ..+.+++..+|.||+||++|
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi----------~~~~~~~~~~~~Q~~gR~~R 80 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVI----------IYDLPWSPASYIQRIGRAGR 80 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEE----------EeCCCCCHHHHHHhhccccc
Confidence 56799999999999999999999999999999999999999999888777 45678999999999999999
Q ss_pred C
Q 000129 1713 P 1713 (2114)
Q Consensus 1713 ~ 1713 (2114)
.
T Consensus 81 ~ 81 (82)
T smart00490 81 A 81 (82)
T ss_pred C
Confidence 6
No 300
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.84 E-value=2.4e-07 Score=121.40 Aligned_cols=127 Identities=18% Similarity=0.124 Sum_probs=87.5
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.++++|--.--.+ +.+ -|....||-|||+++.+|++-.... +. .+-+|+++.-||..=++.+.. +-+.+|+
T Consensus 85 r~ydVQliGgl~L-h~G--~IAEM~TGEGKTL~atlpaylnAL~---Gk--gVhVVTvNdYLA~RDae~m~~-vy~~LGL 155 (939)
T PRK12902 85 RHFDVQLIGGMVL-HEG--QIAEMKTGEGKTLVATLPSYLNALT---GK--GVHVVTVNDYLARRDAEWMGQ-VHRFLGL 155 (939)
T ss_pred CcchhHHHhhhhh-cCC--ceeeecCCCChhHHHHHHHHHHhhc---CC--CeEEEeCCHHHHHhHHHHHHH-HHHHhCC
Confidence 4455554433333 322 5889999999999999988754444 33 578999999999987776664 4445799
Q ss_pred EEEEEcCCcccc-hhhccCCcEEEEChhhH--HHHHhhhc---ccccccceeEEEecccccc
Q 000129 1421 RVVELTGETAMD-LKLLEKGQIIISTPEKW--DALSRRWK---QRKYVQQVSLFIIDELHLI 1476 (2114)
Q Consensus 1421 ~v~~l~G~~~~~-~~~l~~~~IIV~TPe~l--~~l~r~~~---~~~~l~~v~liIiDEaH~l 1476 (2114)
+|++..++.+.. .+..-.+||+++|+..+ |.|-.+.. .......+.+.||||+|.+
T Consensus 156 tvg~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSI 217 (939)
T PRK12902 156 SVGLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSI 217 (939)
T ss_pred eEEEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccce
Confidence 999998876655 34445679999999986 22222211 1224567889999999954
No 301
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.83 E-value=2.2e-07 Score=120.73 Aligned_cols=303 Identities=14% Similarity=0.152 Sum_probs=161.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCcc
Q 000129 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~ 590 (2114)
+.-.+|-||.|||||.+..-++-..+.. .+.++++|+.+++|+.+...+|+...- .|+..-.-.++...
T Consensus 49 ~~V~vVRSpMGTGKTtaLi~wLk~~l~~----------~~~~VLvVShRrSL~~sL~~rf~~~~l-~gFv~Y~d~~~~~i 117 (824)
T PF02399_consen 49 RGVLVVRSPMGTGKTTALIRWLKDALKN----------PDKSVLVVSHRRSLTKSLAERFKKAGL-SGFVNYLDSDDYII 117 (824)
T ss_pred CCeEEEECCCCCCcHHHHHHHHHHhccC----------CCCeEEEEEhHHHHHHHHHHHHhhcCC-Ccceeeeccccccc
Confidence 4457899999999998765444333221 245899999999999999999976421 12222111112111
Q ss_pred ChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-CCchhH---HHHHHHHHHHHhhccccccEEEE
Q 000129 591 TRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVL---ESIVARTVRQIETTKEHIRLVGL 666 (2114)
Q Consensus 591 ~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~l---e~iv~rl~~~~~~~~~~~riv~l 666 (2114)
.. ...+-+++..+ ++-|... ..+.++++|||||+-.+.. -+.+.+ +.+.+.+... .....++|++
T Consensus 118 ~~---~~~~rLivqId---SL~R~~~--~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~l---I~~ak~VI~~ 186 (824)
T PF02399_consen 118 DG---RPYDRLIVQID---SLHRLDG--SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKEL---IRNAKTVIVM 186 (824)
T ss_pred cc---cccCeEEEEeh---hhhhccc--ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHH---HHhCCeEEEe
Confidence 11 12344555544 5555443 4567799999999975432 122222 2222222222 2345678999
Q ss_pred ccccCChHHHHHHHh-ccccCceEeecCCcccccceeEEEee---------------cc----Cc----------hhHHH
Q 000129 667 SATLPNYEDVALFLR-VNLEKGLFYFDNSYRPVPLSQQYIGI---------------QV----KK----------PLQRF 716 (2114)
Q Consensus 667 SATlpn~~dva~~l~-~~~~~~~~~f~~~~rpv~l~~~~~~~---------------~~----~~----------~~~~~ 716 (2114)
-||+.+ ..-+|+. ..+...+.++..+|........-..+ .. .. .....
T Consensus 187 DA~ln~--~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (824)
T PF02399_consen 187 DADLND--QTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAI 264 (824)
T ss_pred cCCCCH--HHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCcccccccc
Confidence 999963 3333442 33344444444443322111111000 00 00 00000
Q ss_pred HHhhHHHHHHHHH-HhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccC
Q 000129 717 QLMNDLCYEKVVA-VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPY 795 (2114)
Q Consensus 717 ~~~~~~~~~~i~~-~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~ 795 (2114)
..-....+..+.. ...++.+-||++|...++.+++...... .
T Consensus 265 ~~~~~tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~-------------------------------------~ 307 (824)
T PF02399_consen 265 SNDETTFFSELLARLNAGKNICVFSSTVSFAEIVARFCARFT-------------------------------------K 307 (824)
T ss_pred ccchhhHHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcC-------------------------------------C
Confidence 0000112333333 3347788899999988887777665431 1
Q ss_pred ceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEE--EEecceeccCCCCccccCCHHHHHHhhcccCC
Q 000129 796 GFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTV--IIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2114)
Q Consensus 796 gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~v--VI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2114)
.|..+++.-+.. .++. =++.+|++=|+++..|+++-...+ +.-+-.+. .. --+..+..||+||.-.
T Consensus 308 ~Vl~l~s~~~~~---dv~~---W~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~--~~----gpd~~s~~Q~lgRvR~ 375 (824)
T PF02399_consen 308 KVLVLNSTDKLE---DVES---WKKYDVVIYTPVITVGLSFEEKHFDSMFAYVKPM--SY----GPDMVSVYQMLGRVRS 375 (824)
T ss_pred eEEEEcCCCCcc---cccc---ccceeEEEEeceEEEEeccchhhceEEEEEecCC--CC----CCcHHHHHHHHHHHHh
Confidence 234445543333 2221 356899999999999999864321 22211111 11 1256679999999966
Q ss_pred CCCCCceEEEEEcCCC
Q 000129 874 PQYDSYGEGIIITGHS 889 (2114)
Q Consensus 874 ~g~d~~G~~iil~~~~ 889 (2114)
.. ..+.++.++..
T Consensus 376 l~---~~ei~v~~d~~ 388 (824)
T PF02399_consen 376 LL---DNEIYVYIDAS 388 (824)
T ss_pred hc---cCeEEEEEecc
Confidence 53 45666666553
No 302
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.83 E-value=3.1e-07 Score=110.13 Aligned_cols=355 Identities=19% Similarity=0.214 Sum_probs=181.9
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000129 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~ 1418 (2114)
+..+-|+|.+-+.-.++.+..+++.-.-|-|||+.| ++|...+.. .. -.|+++|- .+-..+.+.+.+-|....
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQA-laIA~yyra---Ew--plliVcPA-svrftWa~al~r~lps~~ 268 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQA-LAIARYYRA---EW--PLLIVCPA-SVRFTWAKALNRFLPSIH 268 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHH-HHHHHHHhh---cC--cEEEEecH-HHhHHHHHHHHHhccccc
Confidence 557889999999998887777999999999999998 677766665 33 57889995 333344444543333332
Q ss_pred CcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhc
Q 000129 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQV 1498 (2114)
Q Consensus 1419 g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~ 1498 (2114)
.+.|+.-..|...+ .-....|.|.+.+.+..+-...+ -...+++|+||.|+|.+..... .+.+..-+
T Consensus 269 pi~vv~~~~D~~~~--~~t~~~v~ivSye~ls~l~~~l~----~~~~~vvI~DEsH~Lk~sktkr-------~Ka~~dll 335 (689)
T KOG1000|consen 269 PIFVVDKSSDPLPD--VCTSNTVAIVSYEQLSLLHDILK----KEKYRVVIFDESHMLKDSKTKR-------TKAATDLL 335 (689)
T ss_pred ceEEEecccCCccc--cccCCeEEEEEHHHHHHHHHHHh----cccceEEEEechhhhhccchhh-------hhhhhhHH
Confidence 33333222222222 11234788999888765544322 2247999999999997654322 23222222
Q ss_pred CCCceEEEEcccCCCh--hHHHHHhcCCCCcee----ecC---CCCCccCcEEEEecccccchHHH-----HHhcCHHHH
Q 000129 1499 ENKIRIVALSTSLANA--KDLGEWIGATSHGLF----NFP---PGVRPVPLEIHIQGVDITNFEAR-----MQAMTKPTF 1564 (2114)
Q Consensus 1499 ~~~~riV~lSATl~n~--~dla~wl~~~~~~~~----~f~---~~~rpv~l~~~~~~~~~~~~~~~-----~~~~~~~~~ 1564 (2114)
..-.++|+||.|++-. .++-..+....+.+| .|. .+.+.++.-..+.+.. +.... -..|.+...
T Consensus 336 k~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~t--nl~EL~~lL~k~lMIRRlK 413 (689)
T KOG1000|consen 336 KVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCT--NLEELAALLFKRLMIRRLK 413 (689)
T ss_pred HHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCC--CHHHHHHHHHHHHHHHHHH
Confidence 3456899999998532 233222222221111 111 1122223222222211 11111 122444555
Q ss_pred HHHHHHhcCCCCEEEEe-CChHHHHHHHHHHHHhhccCCcc-----ccc----cc-CCCcccchhhHhhh----------
Q 000129 1565 TAIVQHAKNEKPALVFV-PSRKYVRLTAVDLMTYSSMDGDQ-----KSA----FL-LWPAEEVEPFIDNI---------- 1623 (2114)
Q Consensus 1565 ~~i~~~l~~~~~~LVFv-~sr~~a~~la~~L~~~~~~~~~~-----~~~----~l-~~~~~~l~~~~~~i---------- 1623 (2114)
..++..+-+..+.+|++ +.+..++.- +|.......... +.. |. ......+..+.+.+
T Consensus 414 ~dvL~qLPpKrr~Vv~~~~gr~da~~~--~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~ 491 (689)
T KOG1000|consen 414 ADVLKQLPPKRREVVYVSGGRIDARMD--DLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAP 491 (689)
T ss_pred HHHHhhCCccceEEEEEcCCccchHHH--HHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCC
Confidence 55555555555555554 444333221 111111100000 000 00 00111111111111
Q ss_pred -------------hHHHHHHHhcc--ceEeecCCCCHHHHHHHHHHHhcC-CceE-EEecCccccccCCCCcEEEEEeee
Q 000129 1624 -------------QEEMLKATLRH--GVGYLHEGLNKTDQEVVSALFEAG-KIKV-CVMSSSMCWGVPLTAHLVVVMGTQ 1686 (2114)
Q Consensus 1624 -------------~d~~L~~~l~~--gV~~~H~~ls~~dR~~v~~~F~~g-~i~V-LVaT~~la~Gvdip~~~vVI~gt~ 1686 (2114)
-|..-...-.. |...+.|..+..+|....+.|... +++| +++-..+..|+++.+..+||-
T Consensus 492 ~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVF--- 568 (689)
T KOG1000|consen 492 PRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVF--- 568 (689)
T ss_pred CceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEE---
Confidence 11112222233 345567999999999999999855 3443 333445688999998888873
Q ss_pred EecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeec
Q 000129 1687 YYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHA 1727 (2114)
Q Consensus 1687 ~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~ 1727 (2114)
...+.++.-++|-=-||-|-|...+--++.||..
T Consensus 569 -------aEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAK 602 (689)
T KOG1000|consen 569 -------AELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAK 602 (689)
T ss_pred -------EEecCCCceEEechhhhhhccccceeeEEEEEec
Confidence 2333444445565566666543333334444443
No 303
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.81 E-value=3.2e-07 Score=120.68 Aligned_cols=126 Identities=20% Similarity=0.129 Sum_probs=86.7
Q ss_pred CCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcE
Q 000129 1342 FNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMR 1421 (2114)
Q Consensus 1342 ~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~ 1421 (2114)
++++|--.--.+ .+.-|....||.|||+++.+|+.-.... +. .|-+|+++..||.+-++.+...| +.+|++
T Consensus 77 ~ydvQlig~l~L---~~G~IaEm~TGEGKTL~a~l~ayl~aL~---G~--~VhVvT~NdyLA~RD~e~m~pvy-~~LGLs 147 (870)
T CHL00122 77 HFDVQLIGGLVL---NDGKIAEMKTGEGKTLVATLPAYLNALT---GK--GVHIVTVNDYLAKRDQEWMGQIY-RFLGLT 147 (870)
T ss_pred CCchHhhhhHhh---cCCccccccCCCCchHHHHHHHHHHHhc---CC--ceEEEeCCHHHHHHHHHHHHHHH-HHcCCc
Confidence 555555443222 2336889999999999999988533332 33 67899999999999888776444 457999
Q ss_pred EEEEcCCcccch-hhccCCcEEEEChhhHH-HHHhh-hc---ccccccceeEEEecccccc
Q 000129 1422 VVELTGETAMDL-KLLEKGQIIISTPEKWD-ALSRR-WK---QRKYVQQVSLFIIDELHLI 1476 (2114)
Q Consensus 1422 v~~l~G~~~~~~-~~l~~~~IIV~TPe~l~-~l~r~-~~---~~~~l~~v~liIiDEaH~l 1476 (2114)
|++..++.+... +..-.++|+++|..-+- ..+|. .. .......+.+.||||+|.+
T Consensus 148 vg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSi 208 (870)
T CHL00122 148 VGLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSI 208 (870)
T ss_pred eeeeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhh
Confidence 999988776653 34446799999998652 23332 11 1113456889999999954
No 304
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.69 E-value=1e-07 Score=99.67 Aligned_cols=136 Identities=17% Similarity=0.218 Sum_probs=78.1
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhhc
Q 000129 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLL 1436 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~l 1436 (2114)
++-.+|-..+|+|||.-.+--+++.... .+. |+|+++|||.++.++.+.++ |..+..-+.-.. ....
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~--~~~--rvLvL~PTRvva~em~~aL~-------~~~~~~~t~~~~--~~~~ 70 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIK--RRL--RVLVLAPTRVVAEEMYEALK-------GLPVRFHTNARM--RTHF 70 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHH--TT----EEEEESSHHHHHHHHHHTT-------TSSEEEESTTSS------
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHH--ccC--eEEEecccHHHHHHHHHHHh-------cCCcccCceeee--cccc
Confidence 4456888999999998655544443333 244 99999999999999988665 222222222111 1223
Q ss_pred cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCCh
Q 000129 1437 EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA 1514 (2114)
Q Consensus 1437 ~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~ 1514 (2114)
.+.-|-|+|-..+...+.. ...+.++++||+||+|..... --.+...++.... ....++|.+|||+|-.
T Consensus 71 g~~~i~vMc~at~~~~~~~---p~~~~~yd~II~DEcH~~Dp~----sIA~rg~l~~~~~--~g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 71 GSSIIDVMCHATYGHFLLN---PCRLKNYDVIIMDECHFTDPT----SIAARGYLRELAE--SGEAKVIFMTATPPGS 139 (148)
T ss_dssp SSSSEEEEEHHHHHHHHHT---SSCTTS-SEEEECTTT--SHH----HHHHHHHHHHHHH--TTS-EEEEEESS-TT-
T ss_pred CCCcccccccHHHHHHhcC---cccccCccEEEEeccccCCHH----HHhhheeHHHhhh--ccCeeEEEEeCCCCCC
Confidence 4456888888876655443 334689999999999975321 1123333444332 2357899999999743
No 305
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.68 E-value=1.8e-06 Score=112.42 Aligned_cols=302 Identities=15% Similarity=0.174 Sum_probs=160.8
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhhc
Q 000129 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLL 1436 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~l 1436 (2114)
+...+|-||.|||||.+..-+ ++.... .+.. ++++|+.+++|+.+...+++.. ...|.....-.++...+.
T Consensus 49 ~~V~vVRSpMGTGKTtaLi~w-Lk~~l~-~~~~--~VLvVShRrSL~~sL~~rf~~~--~l~gFv~Y~d~~~~~i~~--- 119 (824)
T PF02399_consen 49 RGVLVVRSPMGTGKTTALIRW-LKDALK-NPDK--SVLVVSHRRSLTKSLAERFKKA--GLSGFVNYLDSDDYIIDG--- 119 (824)
T ss_pred CCeEEEECCCCCCcHHHHHHH-HHHhcc-CCCC--eEEEEEhHHHHHHHHHHHHhhc--CCCcceeeeccccccccc---
Confidence 455789999999999765333 333221 2344 9999999999999999988731 111222111111111110
Q ss_pred cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCC-CCch---HHHHHHHHHHHHhhcCCCceEEEEcccCC
Q 000129 1437 EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGPV---LEVIVSRMRYIASQVENKIRIVALSTSLA 1512 (2114)
Q Consensus 1437 ~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~-~g~~---le~i~srl~~i~~~~~~~~riV~lSATl~ 1512 (2114)
...+-+++..+. +.|- ....+.++++|||||+-.+... ..++ .+.+...++.+. ....++|++-|++.
T Consensus 120 ~~~~rLivqIdS---L~R~--~~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI---~~ak~VI~~DA~ln 191 (824)
T PF02399_consen 120 RPYDRLIVQIDS---LHRL--DGSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELI---RNAKTVIVMDADLN 191 (824)
T ss_pred cccCeEEEEehh---hhhc--ccccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHH---HhCCeEEEecCCCC
Confidence 123445555444 3332 1235778999999999854331 1222 233444444443 45678999999996
Q ss_pred Chh-HHHHHhc-CCCCc-eeec--CC--CCCccCcEEEEecccccchH------------------------HHHHhcC-
Q 000129 1513 NAK-DLGEWIG-ATSHG-LFNF--PP--GVRPVPLEIHIQGVDITNFE------------------------ARMQAMT- 1560 (2114)
Q Consensus 1513 n~~-dla~wl~-~~~~~-~~~f--~~--~~rpv~l~~~~~~~~~~~~~------------------------~~~~~~~- 1560 (2114)
+.- ++-+-+. ..... ++|- .+ +.|...+ ...+...... .......
T Consensus 192 ~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~---~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (824)
T PF02399_consen 192 DQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTF---LRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDE 268 (824)
T ss_pred HHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEE---ecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccch
Confidence 532 4433332 22111 1110 00 0011000 0000000000 0000011
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeec
Q 000129 1561 KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLH 1640 (2114)
Q Consensus 1561 ~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H 1640 (2114)
..-+..+...+..++.+-||++|...++.++..... ....|..++
T Consensus 269 ~tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~-----------------------------------~~~~Vl~l~ 313 (824)
T PF02399_consen 269 TTFFSELLARLNAGKNICVFSSTVSFAEIVARFCAR-----------------------------------FTKKVLVLN 313 (824)
T ss_pred hhHHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHh-----------------------------------cCCeEEEEc
Confidence 123455666778889999999988877666543311 234577777
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEE--EEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCc
Q 000129 1641 EGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLV--VVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNS 1718 (2114)
Q Consensus 1641 ~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~v--VI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~ 1718 (2114)
+.-+.. .+.+ =++.+|++=|+++..|+++....+ |. .|..+. ..-.+..+..||+||+-.. ..
T Consensus 314 s~~~~~---dv~~---W~~~~VviYT~~itvG~Sf~~~HF~~~f---~yvk~~---~~gpd~~s~~Q~lgRvR~l---~~ 378 (824)
T PF02399_consen 314 STDKLE---DVES---WKKYDVVIYTPVITVGLSFEEKHFDSMF---AYVKPM---SYGPDMVSVYQMLGRVRSL---LD 378 (824)
T ss_pred CCCCcc---cccc---ccceeEEEEeceEEEEeccchhhceEEE---EEecCC---CCCCcHHHHHHHHHHHHhh---cc
Confidence 665544 2221 456899999999999999874321 11 011111 1112466799999999764 35
Q ss_pred eEEEEEeecC
Q 000129 1719 GKCVILCHAP 1728 (2114)
Q Consensus 1719 G~~iil~~~~ 1728 (2114)
.+.++.+...
T Consensus 379 ~ei~v~~d~~ 388 (824)
T PF02399_consen 379 NEIYVYIDAS 388 (824)
T ss_pred CeEEEEEecc
Confidence 5566655543
No 306
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.65 E-value=2e-06 Score=113.88 Aligned_cols=127 Identities=17% Similarity=0.130 Sum_probs=87.8
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.+.++|.-.-- +++.+ -|.-+.||=|||+++.+|+.-....++ -|-+|+..--||.-=++.+...+
T Consensus 169 ~~yDVQliGgi-vLh~G--~IAEM~TGEGKTLvAtlp~yLnAL~Gk-----------gVHvVTVNDYLA~RDaewmgply 234 (1112)
T PRK12901 169 VHYDVQLIGGV-VLHQG--KIAEMATGEGKTLVATLPVYLNALTGN-----------GVHVVTVNDYLAKRDSEWMGPLY 234 (1112)
T ss_pred cccchHHhhhh-hhcCC--ceeeecCCCCchhHHHHHHHHHHHcCC-----------CcEEEEechhhhhccHHHHHHHH
Confidence 34556654433 33433 478899999999999999877666542 25566777788888888888888
Q ss_pred ccCCcEEEEEeC-CCcc-ChhhhccceEEEcCHhHH--HHHHhcc---CCCcccccccEEEEeccccc
Q 000129 575 QMYDVKVRELSG-DQTL-TRQQIEETQIIVTTPEKW--DIITRKS---GDRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 575 ~~~gi~v~~l~G-d~~~-~~~~~~~~~IiV~TPek~--d~l~r~~---~~~~~l~~v~liIiDEaH~l 635 (2114)
..+|++|+.... +.+. .++..-.++|.++|.--+ |.|.-+. .+......+.+.||||||.+
T Consensus 235 ~fLGLsvg~i~~~~~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSI 302 (1112)
T PRK12901 235 EFHGLSVDCIDKHQPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSV 302 (1112)
T ss_pred HHhCCceeecCCCCCCHHHHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhh
Confidence 889999998865 3232 233445899999998764 5443332 12234456789999999965
No 307
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.62 E-value=1.4e-07 Score=98.71 Aligned_cols=133 Identities=20% Similarity=0.334 Sum_probs=75.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCcc
Q 000129 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~ 590 (2114)
++--+|-..+|||||.-.+--++++.... +.++|+++|||.++.++.+.++.. ++++. +.-..
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~----------~~rvLvL~PTRvva~em~~aL~~~----~~~~~--t~~~~- 66 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKR----------RLRVLVLAPTRVVAEEMYEALKGL----PVRFH--TNARM- 66 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHT----------T--EEEEESSHHHHHHHHHHTTTS----SEEEE--STTSS-
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHc----------cCeEEEecccHHHHHHHHHHHhcC----CcccC--ceeee-
Confidence 44467889999999986655555543332 248999999999999998877542 33332 21111
Q ss_pred ChhhhccceEEEcCHhHH-HHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHH-HHHHhhccccccEEEEcc
Q 000129 591 TRQQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVART-VRQIETTKEHIRLVGLSA 668 (2114)
Q Consensus 591 ~~~~~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl-~~~~~~~~~~~riv~lSA 668 (2114)
.....+.-|-|+|...+ ..+.. . ....++++||+||+|..- -.+|..+- ++... .....++|.+||
T Consensus 67 -~~~~g~~~i~vMc~at~~~~~~~-p---~~~~~yd~II~DEcH~~D------p~sIA~rg~l~~~~-~~g~~~~i~mTA 134 (148)
T PF07652_consen 67 -RTHFGSSIIDVMCHATYGHFLLN-P---CRLKNYDVIIMDECHFTD------PTSIAARGYLRELA-ESGEAKVIFMTA 134 (148)
T ss_dssp -----SSSSEEEEEHHHHHHHHHT-S---SCTTS-SEEEECTTT--S------HHHHHHHHHHHHHH-HTTS-EEEEEES
T ss_pred -ccccCCCcccccccHHHHHHhcC-c---ccccCccEEEEeccccCC------HHHHhhheeHHHhh-hccCeeEEEEeC
Confidence 12234566788888876 33333 2 345789999999999742 11222221 11111 234578999999
Q ss_pred ccCC
Q 000129 669 TLPN 672 (2114)
Q Consensus 669 Tlpn 672 (2114)
|-|.
T Consensus 135 TPPG 138 (148)
T PF07652_consen 135 TPPG 138 (148)
T ss_dssp S-TT
T ss_pred CCCC
Confidence 9774
No 308
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.57 E-value=7.6e-07 Score=117.46 Aligned_cols=338 Identities=20% Similarity=0.249 Sum_probs=197.3
Q ss_pred CCccccCCCChhhHhhcCCCCCCCHHHHHHHHHHHc---CCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCC
Q 000129 474 EKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALS---SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550 (2114)
Q Consensus 474 ~~l~~i~~lp~~~~~~f~g~~~l~~iQ~~~i~~~l~---~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~ 550 (2114)
+...+++.-|+|.. | .+|+.+|-+-++-++. .+.|+|+.-.-|-|||..-.- .|..+.....-.|
T Consensus 354 p~~~Kle~qp~~~~----g-~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~-fl~~l~~~~~~~g------ 421 (1373)
T KOG0384|consen 354 PRFRKLEKQPEYKG----G-NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTIT-FLSYLFHSLQIHG------ 421 (1373)
T ss_pred hhHHHhhcCccccc----c-chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHH-HHHHHHHhhhccC------
Confidence 34555666666643 3 6899999998875543 467899999999999975432 2222222111111
Q ss_pred cEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh------------hccceEEEcCHhHHHHHHhccCCC
Q 000129 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ------------IEETQIIVTTPEKWDIITRKSGDR 618 (2114)
Q Consensus 551 ~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~------------~~~~~IiV~TPek~d~l~r~~~~~ 618 (2114)
-.|+|+|.--+ .-+.++|..+. .+++..++|+.....-. .-..++++||.|. ++.- .
T Consensus 422 -pflvvvplst~-~~W~~ef~~w~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~---~LkD---k 490 (1373)
T KOG0384|consen 422 -PFLVVVPLSTI-TAWEREFETWT---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEI---VLKD---K 490 (1373)
T ss_pred -CeEEEeehhhh-HHHHHHHHHHh---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHH---Hhcc---H
Confidence 25778887554 45666676654 57888899975432210 0147899999995 2221 1
Q ss_pred ccccc--ccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEcccc-C-ChHHHHHHHhccccCceEe----
Q 000129 619 TYTQL--VKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATL-P-NYEDVALFLRVNLEKGLFY---- 690 (2114)
Q Consensus 619 ~~l~~--v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATl-p-n~~dva~~l~~~~~~~~~~---- 690 (2114)
..++. ..+++|||||+|...-...++. +.. ...+- -+++|.|. . |.+++...+..-.+ +-|.
T Consensus 491 ~~L~~i~w~~~~vDeahrLkN~~~~l~~~-l~~-------f~~~~-rllitgTPlQNsikEL~sLl~Fl~P-~kf~~~~~ 560 (1373)
T KOG0384|consen 491 AELSKIPWRYLLVDEAHRLKNDESKLYES-LNQ-------FKMNH-RLLITGTPLQNSLKELWSLLHFLMP-GKFDSWDE 560 (1373)
T ss_pred hhhccCCcceeeecHHhhcCchHHHHHHH-HHH-------hcccc-eeeecCCCccccHHHHHHHhcccCC-CCCCcHHH
Confidence 23333 3689999999997533333332 111 12223 36777772 1 35555544432111 0000
Q ss_pred ----ec-----------CCccc--------------ccceeEEEeeccCch------------------------hHHHH
Q 000129 691 ----FD-----------NSYRP--------------VPLSQQYIGIQVKKP------------------------LQRFQ 717 (2114)
Q Consensus 691 ----f~-----------~~~rp--------------v~l~~~~~~~~~~~~------------------------~~~~~ 717 (2114)
|+ ...+| .|-..+++.+....- ...++
T Consensus 561 f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLN 640 (1373)
T KOG0384|consen 561 FLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLN 640 (1373)
T ss_pred HHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHH
Confidence 00 00001 011112221111000 00011
Q ss_pred HhhH----------------------------HH-------------HHHHHHHh--CCCeEEEEecChHHHHHHHHHHH
Q 000129 718 LMND----------------------------LC-------------YEKVVAVA--GKHQVLIFVHSRKETAKTARAIR 754 (2114)
Q Consensus 718 ~~~~----------------------------~~-------------~~~i~~~~--~~~~vLVFv~sr~~~~~~a~~L~ 754 (2114)
.|.+ .. .++++-.+ ++++||||..-.+--.-++.+|.
T Consensus 641 immELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~ 720 (1373)
T KOG0384|consen 641 IMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLS 720 (1373)
T ss_pred HHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHH
Confidence 1100 11 11222111 26789999877777777777776
Q ss_pred HHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhC---CCceEEEechHhh
Q 000129 755 DTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGD---GHVQVLVSTATLA 831 (2114)
Q Consensus 755 ~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~---g~i~VLVaT~tla 831 (2114)
.+++.. .-+-|++..+-|+..++.|.. .....|.||-+.+
T Consensus 721 ~r~ypf-------------------------------------QRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGG 763 (1373)
T KOG0384|consen 721 LRGYPF-------------------------------------QRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGG 763 (1373)
T ss_pred HcCCcc-------------------------------------eeccCCcchHHHHHHHHhccCCCCCceEEEEecccCc
Confidence 655433 233799999999999999964 4577899999999
Q ss_pred hhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcH
Q 000129 832 WGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891 (2114)
Q Consensus 832 ~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~ 891 (2114)
-||||-+.+.||-++.-|||. .=+|-.-||-|-|..+.-.+|.+++.+..
T Consensus 764 LGINLatADTVIIFDSDWNPQ----------NDLQAqARaHRIGQkk~VnVYRLVTk~Tv 813 (1373)
T KOG0384|consen 764 LGINLATADTVIIFDSDWNPQ----------NDLQAQARAHRIGQKKHVNVYRLVTKNTV 813 (1373)
T ss_pred ccccccccceEEEeCCCCCcc----------hHHHHHHHHHhhcccceEEEEEEecCCch
Confidence 999998877766655555554 57899999999988788888988887653
No 309
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.57 E-value=5e-06 Score=105.71 Aligned_cols=128 Identities=20% Similarity=0.209 Sum_probs=85.0
Q ss_pred CCCCCHHHHHHHHHHHc---CCCcEEEEccCCCchHHHH--HHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHH
Q 000129 493 MTQLNRVQSRVYKSALS---SADNILLCAPTGAGKTNVA--VLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (2114)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~---~~~nvlv~APTGsGKT~~a--~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~ 567 (2114)
+..|.++|++.+.-+++ .+.--|+.-.-|=|||... .|+.+++-.+. ...+|||+|. .++.|+.
T Consensus 203 ~~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~----------~~paLIVCP~-Tii~qW~ 271 (923)
T KOG0387|consen 203 WSKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKL----------TKPALIVCPA-TIIHQWM 271 (923)
T ss_pred HHHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccc----------cCceEEEccH-HHHHHHH
Confidence 35788999999886643 3334677889999999653 34444332111 1269999996 5778999
Q ss_pred HHHHHhhccCCcEEEEEeCCCcc----------------ChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEec
Q 000129 568 GNLSNRLQMYDVKVRELSGDQTL----------------TRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDE 631 (2114)
Q Consensus 568 ~~~~~~~~~~gi~v~~l~Gd~~~----------------~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDE 631 (2114)
.+|..++.+ ++|.+++|..+. .........|+++|.+.+. ..++...-...+++|+||
T Consensus 272 ~E~~~w~p~--~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r----~~~d~l~~~~W~y~ILDE 345 (923)
T KOG0387|consen 272 KEFQTWWPP--FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFR----IQGDDLLGILWDYVILDE 345 (923)
T ss_pred HHHHHhCcc--eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhc----ccCcccccccccEEEecC
Confidence 999998764 578888875542 1112345679999998642 222222223458999999
Q ss_pred cccccc
Q 000129 632 IHLLHD 637 (2114)
Q Consensus 632 aH~l~d 637 (2114)
.|.+-.
T Consensus 346 GH~IrN 351 (923)
T KOG0387|consen 346 GHRIRN 351 (923)
T ss_pred cccccC
Confidence 999864
No 310
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.50 E-value=3.9e-06 Score=111.00 Aligned_cols=86 Identities=14% Similarity=0.092 Sum_probs=72.8
Q ss_pred ccceEeecCCCCHHHHHHHHHHHhcC---CceEEEecCccccccCCCC-cEEEEEeeeEecCCcCcCCCCCHhHHHHhHc
Q 000129 1633 RHGVGYLHEGLNKTDQEVVSALFEAG---KIKVCVMSSSMCWGVPLTA-HLVVVMGTQYYDGQENAHTDYPVTDLLQMMG 1708 (2114)
Q Consensus 1633 ~~gV~~~H~~ls~~dR~~v~~~F~~g---~i~VLVaT~~la~Gvdip~-~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~G 1708 (2114)
++....+.|++..+-|+..+..|..- ..-.|+||...+-|||+-+ .+||| ++.+.++..=+|-..
T Consensus 723 ~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVII-----------FDSDWNPQNDLQAqA 791 (1373)
T KOG0384|consen 723 GYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVII-----------FDSDWNPQNDLQAQA 791 (1373)
T ss_pred CCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEE-----------eCCCCCcchHHHHHH
Confidence 44566788999999999999999854 5568999999999999985 55555 778888888899999
Q ss_pred ccCCCCCCCceEEEEEeecCc
Q 000129 1709 HASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1709 RAGR~~~~~~G~~iil~~~~~ 1729 (2114)
||-|-|....-.+|.|++...
T Consensus 792 RaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 792 RAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred HHHhhcccceEEEEEEecCCc
Confidence 999998888889999998764
No 311
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.49 E-value=1.5e-05 Score=110.73 Aligned_cols=342 Identities=17% Similarity=0.172 Sum_probs=175.9
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccc-hhhc
Q 000129 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD-LKLL 1436 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~-~~~l 1436 (2114)
..-+|.=-||||||+......-..+.. .+.+++++|+-+++|-.|+.+.+. .|+....... ..+.... .+.+
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~---~~~~~v~fvvDR~dLd~Q~~~~f~-~~~~~~~~~~---~~~s~~~Lk~~l 346 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLEL---PKNPKVLFVVDRKDLDDQTSDEFQ-SFGKVAFNDP---KAESTSELKELL 346 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhc---cCCCeEEEEechHHHHHHHHHHHH-HHHHhhhhcc---cccCHHHHHHHH
Confidence 468999999999998875544433333 334499999999999999999998 5665321111 1111111 2233
Q ss_pred c--CCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCCh
Q 000129 1437 E--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA 1514 (2114)
Q Consensus 1437 ~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~ 1514 (2114)
+ .+.|||+|-++|............-.+=-+||+||||+-- .| ....+|+... ++...+|+|.|+--.
T Consensus 347 ~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ--~G----~~~~~~~~~~----~~a~~~gFTGTPi~~ 416 (962)
T COG0610 347 EDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ--YG----ELAKLLKKAL----KKAIFIGFTGTPIFK 416 (962)
T ss_pred hcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc--cc----HHHHHHHHHh----ccceEEEeeCCcccc
Confidence 3 3489999999997766542111112223478999999642 22 2344444442 348899999998433
Q ss_pred hHH---HHHhcCCCCceeecCCCCCc---cCcEEEEe-cccc-----c--ch--HHH--------------------HHh
Q 000129 1515 KDL---GEWIGATSHGLFNFPPGVRP---VPLEIHIQ-GVDI-----T--NF--EAR--------------------MQA 1558 (2114)
Q Consensus 1515 ~dl---a~wl~~~~~~~~~f~~~~rp---v~l~~~~~-~~~~-----~--~~--~~~--------------------~~~ 1558 (2114)
++- ..-+|... ..|...+..+- +|+..... .... . .. ... ...
T Consensus 417 ~d~~tt~~~fg~yl-h~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 495 (962)
T COG0610 417 EDKDTTKDVFGDYL-HTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLA 495 (962)
T ss_pred ccccchhhhhccee-EEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHh
Confidence 221 12222211 12222222221 11111111 0000 0 00 000 000
Q ss_pred cC----HHHHHHHHHHh----cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHH
Q 000129 1559 MT----KPTFTAIVQHA----KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKA 1630 (2114)
Q Consensus 1559 ~~----~~~~~~i~~~l----~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~ 1630 (2114)
+. ......+..+. ..+.++.+-+++++-|................ .+..+..+... ..
T Consensus 496 ~~~~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~~~-----~~ 561 (962)
T COG0610 496 MLAVRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHS---------KESLEGAIKDY-----NT 561 (962)
T ss_pred cchHHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhh---------hhhhhhHHHHH-----Hh
Confidence 00 01111112221 23445677777777554444433222110000 00000000000 00
Q ss_pred Hhcc--ceEeecCCCCHHHHHHHHHH--HhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHh
Q 000129 1631 TLRH--GVGYLHEGLNKTDQEVVSAL--FEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQM 1706 (2114)
Q Consensus 1631 ~l~~--gV~~~H~~ls~~dR~~v~~~--F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr 1706 (2114)
.... +....|..... .+...... ......++||.++++-+|.|.|....+. .+-|+---.++|-
T Consensus 562 ~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-----------vDK~Lk~H~L~QA 629 (962)
T COG0610 562 EFETDFDKKQSHAKLKD-EKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-----------VDKPLKYHNLIQA 629 (962)
T ss_pred hcccchhhhhhhHHHHH-HHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-----------eccccccchHHHH
Confidence 0000 11111333322 33333444 4567899999999999999999887765 2344455678999
Q ss_pred HcccCCCCCC--CceEEEEEeecCcHHHHHHHHHhccCCCC
Q 000129 1707 MGHASRPLLD--NSGKCVILCHAPRKEYYKKFLRLTQNPNY 1745 (2114)
Q Consensus 1707 ~GRAGR~~~~--~~G~~iil~~~~~~~~~~~~lRl~~nP~~ 1745 (2114)
+-|+.|+-.+ ..|.++-++ .-.+.+++.+++..+...
T Consensus 630 isRtNR~~~~~K~~G~IVDf~--gl~e~l~~Al~~Y~~~~~ 668 (962)
T COG0610 630 ISRTNRVFPGKKKFGLIVDFR--GLKEALKKALKLYSNEGE 668 (962)
T ss_pred HHHhccCCCCCCCCcEEEECc--chHHHHHHHHHHhhcccc
Confidence 9999998544 234444444 477788888888777664
No 312
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.48 E-value=1.2e-06 Score=107.69 Aligned_cols=157 Identities=18% Similarity=0.191 Sum_probs=89.9
Q ss_pred HHHHHHHHHH------------cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCC-CceEEEEEcccHHHHHHHHHHHH
Q 000129 1345 IQTQVFTVLY------------NTDDNVLVAAPTGSGKTICSEFAILRNHQKASET-GVMRAVYIAPLEALAKERYRDWE 1411 (2114)
Q Consensus 1345 iQ~q~~~~il------------~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~-~~~k~l~I~Ptr~La~q~~~~~~ 1411 (2114)
+|.+++.-++ ......|++-.+|+|||+.+...+. .+....+. +.-++|||+|. .+..++..++.
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~ 78 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIE 78 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhccccccccceeEeecc-chhhhhhhhhc
Confidence 4666666543 2345799999999999988855444 44332221 11159999999 88899999998
Q ss_pred HHhcCCCCcEEEEEcCCcc---cchhhccCCcEEEEChhhHHHHHhhhcc-cccccceeEEEecccccccCCCCchHHHH
Q 000129 1412 IKFGQGLGMRVVELTGETA---MDLKLLEKGQIIISTPEKWDALSRRWKQ-RKYVQQVSLFIIDELHLIGGQGGPVLEVI 1487 (2114)
Q Consensus 1412 ~~f~~~~g~~v~~l~G~~~---~~~~~l~~~~IIV~TPe~l~~l~r~~~~-~~~l~~v~liIiDEaH~l~~~~g~~le~i 1487 (2114)
+.+.. ...++..+.|... .........+++|+|.+.+...-..+.. ...--+.++||+||+|.+.+..+..+..+
T Consensus 79 ~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~~~l 157 (299)
T PF00176_consen 79 KWFDP-DSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKRYKAL 157 (299)
T ss_dssp HHSGT--TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHHHHHH
T ss_pred ccccc-ccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEecccccccccccccccc
Confidence 54432 2468888888761 1123455679999999987611111000 00112489999999999965443222221
Q ss_pred HHHHHHHHhhcCCCceEEEEcccCCC
Q 000129 1488 VSRMRYIASQVENKIRIVALSTSLAN 1513 (2114)
Q Consensus 1488 ~srl~~i~~~~~~~~riV~lSATl~n 1513 (2114)
. .+. ....+++|||+-.
T Consensus 158 ~--------~l~-~~~~~lLSgTP~~ 174 (299)
T PF00176_consen 158 R--------KLR-ARYRWLLSGTPIQ 174 (299)
T ss_dssp H--------CCC-ECEEEEE-SS-SS
T ss_pred c--------ccc-cceEEeecccccc
Confidence 1 123 5677889999754
No 313
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.47 E-value=2.8e-06 Score=111.60 Aligned_cols=153 Identities=20% Similarity=0.284 Sum_probs=98.4
Q ss_pred CCCHHHHHHHHHH--HcCCC-cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 495 QLNRVQSRVYKSA--LSSAD-NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~--l~~~~-nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
.|+.+|.+-+.-+ +++-+ +-|+|-.-|=|||+..+-.+.......+ .+......+-.++|+|. .|+--+..++.
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~--s~~~e~~~~PSLIVCPs-TLtGHW~~E~~ 1051 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRR--SESSEFNRLPSLIVCPS-TLTGHWKSEVK 1051 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhc--ccchhhccCCeEEECCc-hhhhHHHHHHH
Confidence 6788999887643 33322 5799999999999987654444333321 12222233448899996 78999999999
Q ss_pred HhhccCCcEEEEEeCCCccC---hhhhccceEEEcCHhHH----HHHHhccCCCcccccccEEEEecccccccCCchhHH
Q 000129 572 NRLQMYDVKVRELSGDQTLT---RQQIEETQIIVTTPEKW----DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLE 644 (2114)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~---~~~~~~~~IiV~TPek~----d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le 644 (2114)
+++.. ++|..++|..... +.+.++++|||+..+.+ +.+.. ....++|+||-|.+...+
T Consensus 1052 kf~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~l~~--------~~wNYcVLDEGHVikN~k----- 1116 (1549)
T KOG0392|consen 1052 KFFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDYLIK--------IDWNYCVLDEGHVIKNSK----- 1116 (1549)
T ss_pred Hhcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHHHHh--------cccceEEecCcceecchH-----
Confidence 98765 6788888864432 23456789999999865 22222 124799999999886433
Q ss_pred HHHHHHHHHHhhccccccEEEEccc
Q 000129 645 SIVARTVRQIETTKEHIRLVGLSAT 669 (2114)
Q Consensus 645 ~iv~rl~~~~~~~~~~~riv~lSAT 669 (2114)
+++.+.+.+...+.| +.||.|
T Consensus 1117 ---tkl~kavkqL~a~hR-LILSGT 1137 (1549)
T KOG0392|consen 1117 ---TKLTKAVKQLRANHR-LILSGT 1137 (1549)
T ss_pred ---HHHHHHHHHHhhcce-EEeeCC
Confidence 122222233333444 667888
No 314
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.42 E-value=8.3e-07 Score=109.23 Aligned_cols=167 Identities=22% Similarity=0.238 Sum_probs=95.7
Q ss_pred HHHHHHHHHHc------------CCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000129 499 VQSRVYKSALS------------SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (2114)
Q Consensus 499 iQ~~~i~~~l~------------~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~ 566 (2114)
+|.+++.-++. ....+|++-.+|+|||..++..+. .+...... ....++|||+|. ++..++
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~-----~~~~~~LIv~P~-~l~~~W 73 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEFPQ-----RGEKKTLIVVPS-SLLSQW 73 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCCTT-----SS-S-EEEEE-T-TTHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhcccc-----ccccceeEeecc-chhhhh
Confidence 46666665432 335699999999999988876655 33332111 011259999999 888999
Q ss_pred HHHHHHhhccCCcEEEEEeCCC---ccChhhhccceEEEcCHhHHHHHHhc-cCCCcccccccEEEEecccccccCCchh
Q 000129 567 VGNLSNRLQMYDVKVRELSGDQ---TLTRQQIEETQIIVTTPEKWDIITRK-SGDRTYTQLVKLLIIDEIHLLHDNRGPV 642 (2114)
Q Consensus 567 ~~~~~~~~~~~gi~v~~l~Gd~---~~~~~~~~~~~IiV~TPek~d~l~r~-~~~~~~l~~v~liIiDEaH~l~d~rg~~ 642 (2114)
..++.+.+.+..+++..+.|+. ..........+++|+|.+.+...... .......-..++||+||+|.+.+.....
T Consensus 74 ~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~ 153 (299)
T PF00176_consen 74 KEEIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKR 153 (299)
T ss_dssp HHHHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHH
T ss_pred hhhhccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEecccccccccccc
Confidence 9999998865567888888876 11122345789999999975411011 1110111237899999999986543333
Q ss_pred HHHHHHHHHHHHhhccccccEEEEccccC-C-hHHHHHHHh
Q 000129 643 LESIVARTVRQIETTKEHIRLVGLSATLP-N-YEDVALFLR 681 (2114)
Q Consensus 643 le~iv~rl~~~~~~~~~~~riv~lSATlp-n-~~dva~~l~ 681 (2114)
...+ .... ....++||||.- | ..++...+.
T Consensus 154 ~~~l--------~~l~-~~~~~lLSgTP~~n~~~dl~~~l~ 185 (299)
T PF00176_consen 154 YKAL--------RKLR-ARYRWLLSGTPIQNSLEDLYSLLR 185 (299)
T ss_dssp HHHH--------HCCC-ECEEEEE-SS-SSSGSHHHHHHHH
T ss_pred cccc--------cccc-cceEEeeccccccccccccccchh
Confidence 3222 1222 556788999932 2 455554443
No 315
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.42 E-value=1.8e-05 Score=100.68 Aligned_cols=357 Identities=17% Similarity=0.206 Sum_probs=200.9
Q ss_pred CCHHHHHHHHH---HHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000129 1342 FNPIQTQVFTV---LYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2114)
Q Consensus 1342 ~~~iQ~q~~~~---il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~ 1418 (2114)
+-++|.--++- +|+.+=|.|++-.-|=|||..+ ++.+..|.+....| .-|||||.-.| ..+.++|. +|..
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQv-IaFlayLkq~g~~g--pHLVVvPsSTl-eNWlrEf~-kwCP-- 472 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQV-IAFLAYLKQIGNPG--PHLVVVPSSTL-ENWLREFA-KWCP-- 472 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchhHH-HHHHHHHHHcCCCC--CcEEEecchhH-HHHHHHHH-HhCC--
Confidence 66677655553 4666778899999999999665 45555555543444 56899998655 34455555 4554
Q ss_pred CcEEEEEcCCcccchh---hc----cCCcEEEEChhhHHHHHhhhccccc--ccceeEEEecccccccCCCCchHHHHHH
Q 000129 1419 GMRVVELTGETAMDLK---LL----EKGQIIISTPEKWDALSRRWKQRKY--VQQVSLFIIDELHLIGGQGGPVLEVIVS 1489 (2114)
Q Consensus 1419 g~~v~~l~G~~~~~~~---~l----~~~~IIV~TPe~l~~l~r~~~~~~~--l~~v~liIiDEaH~l~~~~g~~le~i~s 1489 (2114)
.++|-..+|......+ .+ ...+|+|+|...... .-..+.. -++++++|+||.|.|-+.....|
T Consensus 473 sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~---~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy----- 544 (941)
T KOG0389|consen 473 SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAAS---SKDDRSFLKNQKFNYVIYDEGHMLKNRTSERY----- 544 (941)
T ss_pred ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccC---ChHHHHHHHhccccEEEecchhhhhccchHHH-----
Confidence 5789899997644311 11 244999999875421 0001112 24578999999999975432222
Q ss_pred HHHHHHhhcCCCceEEEEcccCCC-hhHHHHHhcCCCCceeecCCCCCccCcEEEEeccc-------c----cchHHHHH
Q 000129 1490 RMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVD-------I----TNFEARMQ 1557 (2114)
Q Consensus 1490 rl~~i~~~~~~~~riV~lSATl~n-~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~-------~----~~~~~~~~ 1557 (2114)
+.+.+ .+.+.|+++...++.| ..++...|.--...+|..... .+.+.+.... . .....+..
T Consensus 545 --~~LM~-I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~----dl~~if~~k~~~d~d~e~~~l~qerIsrAK 617 (941)
T KOG0389|consen 545 --KHLMS-INANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSME----DLDVIFKAKKTSDGDIENALLSQERISRAK 617 (941)
T ss_pred --HHhcc-ccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccch----HHHHHHhccCCccchhhHHHHHHHHHHHHH
Confidence 22221 2456665555555544 344444332222222221100 0000000000 0 01122233
Q ss_pred hcCHH-----HHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhc----c-CCc--ccc-------------------
Q 000129 1558 AMTKP-----TFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSS----M-DGD--QKS------------------- 1606 (2114)
Q Consensus 1558 ~~~~~-----~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~----~-~~~--~~~------------------- 1606 (2114)
.|.+| ....++..+-+..+.|.||.=.+.-..++..+..... . ..+ ...
T Consensus 618 ~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~ 697 (941)
T KOG0389|consen 618 TIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRS 697 (941)
T ss_pred HhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHH
Confidence 33333 2334445555566678888765555555554443321 0 000 000
Q ss_pred ------------------cccCCCc-----------------------------------------ccchhhHhhhhH--
Q 000129 1607 ------------------AFLLWPA-----------------------------------------EEVEPFIDNIQE-- 1625 (2114)
Q Consensus 1607 ------------------~~l~~~~-----------------------------------------~~l~~~~~~i~d-- 1625 (2114)
.|..+.. ..+..++..++.
T Consensus 698 ~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G 777 (941)
T KOG0389|consen 698 IYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKG 777 (941)
T ss_pred hccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcC
Confidence 0000000 000111111110
Q ss_pred ----------------HHHHHHhccceEeecCCCCHHHHHHHHHHHhcCC-c-eEEEecCccccccCCCCcEEEEEeeeE
Q 000129 1626 ----------------EMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGK-I-KVCVMSSSMCWGVPLTAHLVVVMGTQY 1687 (2114)
Q Consensus 1626 ----------------~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~-i-~VLVaT~~la~Gvdip~~~vVI~gt~~ 1687 (2114)
+.....++++-..+.|...-.+|+.++..|...+ | -.|++|...+-|||+.+.++||
T Consensus 778 ~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VI----- 852 (941)
T KOG0389|consen 778 DRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVI----- 852 (941)
T ss_pred CEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEE-----
Confidence 1223344556677789999999999999998654 3 4688999999999999888888
Q ss_pred ecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcH
Q 000129 1688 YDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRK 1730 (2114)
Q Consensus 1688 yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~ 1730 (2114)
.+++++++-+=.|---||-|.|..++-.++.++.....
T Consensus 853 -----ihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TI 890 (941)
T KOG0389|consen 853 -----IHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTI 890 (941)
T ss_pred -----EeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcH
Confidence 56777777777888888888887788888988887654
No 316
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.36 E-value=2.7e-06 Score=103.35 Aligned_cols=75 Identities=19% Similarity=0.203 Sum_probs=57.0
Q ss_pred CCCCCHHHHHHHHH---HHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000129 493 MTQLNRVQSRVYKS---ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (2114)
Q Consensus 493 ~~~l~~iQ~~~i~~---~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~ 569 (2114)
|+ ++|.|.+.+.. .+..++++++.||||+|||+++++|++..+...... ..+.+++|.++|.++..|....
T Consensus 7 y~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-----~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00488 7 YE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-----IQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-----ccccceeEEeccHHHHHHHHHH
Confidence 44 59999995544 345567899999999999999999998776543210 0234899999999998888777
Q ss_pred HHHh
Q 000129 570 LSNR 573 (2114)
Q Consensus 570 ~~~~ 573 (2114)
+++.
T Consensus 81 l~~~ 84 (289)
T smart00488 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 7654
No 317
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.36 E-value=2.7e-06 Score=103.35 Aligned_cols=75 Identities=19% Similarity=0.203 Sum_probs=57.0
Q ss_pred CCCCCHHHHHHHHH---HHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000129 493 MTQLNRVQSRVYKS---ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (2114)
Q Consensus 493 ~~~l~~iQ~~~i~~---~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~ 569 (2114)
|+ ++|.|.+.+.. .+..++++++.||||+|||+++++|++..+...... ..+.+++|.++|.++..|....
T Consensus 7 y~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-----~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00489 7 YE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-----IQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-----ccccceeEEeccHHHHHHHHHH
Confidence 44 59999995544 345567899999999999999999998776543210 0234899999999998888777
Q ss_pred HHHh
Q 000129 570 LSNR 573 (2114)
Q Consensus 570 ~~~~ 573 (2114)
+++.
T Consensus 81 l~~~ 84 (289)
T smart00489 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 7654
No 318
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.35 E-value=1.1e-05 Score=102.49 Aligned_cols=105 Identities=22% Similarity=0.244 Sum_probs=77.9
Q ss_pred CceEEecCCCCHHHHHHHHHHHhCC-Cc-eEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccC
Q 000129 795 YGFAIHHAGMTRGDRQLVEDLFGDG-HV-QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (2114)
Q Consensus 795 ~gv~~hHagl~~~~R~~v~~~F~~g-~i-~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAG 872 (2114)
+++.-+.|...-.+|+.+++.|-.. .| -.|.+|-+.+-|||+-+.++||-++.-|+|-. =.|---||-
T Consensus 802 ~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~d----------D~QAEDRcH 871 (941)
T KOG0389|consen 802 YKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYD----------DKQAEDRCH 871 (941)
T ss_pred ceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcc----------cchhHHHHH
Confidence 3444567999999999999999743 34 45789999999999999999998787777753 456666777
Q ss_pred CCCCCCceEEEEEcCCCcHH-HHHHhhcCCCcccchhh
Q 000129 873 RPQYDSYGEGIIITGHSELR-YYLSLMNQQLPIESQFV 909 (2114)
Q Consensus 873 R~g~d~~G~~iil~~~~e~~-~~~~ll~~~~pies~l~ 909 (2114)
|.|..++-.++.+.+.+..+ .+..+.+..+.+|+.+.
T Consensus 872 RvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt 909 (941)
T KOG0389|consen 872 RVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLT 909 (941)
T ss_pred hhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhc
Confidence 76666778888888887654 44555666666666554
No 319
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.34 E-value=3.6e-06 Score=99.75 Aligned_cols=167 Identities=14% Similarity=0.151 Sum_probs=136.0
Q ss_pred cccccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChhHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHHHhcccC
Q 000129 1008 ISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKL 1087 (2114)
Q Consensus 1008 i~~~t~~~~~~~l~~~~~~~~~l~i~s~s~ef~~i~~r~~e~~~l~~l~~~~~~~~~~~~~~~~~K~~~llq~~i~~~~~ 1087 (2114)
+.+-||..|-..+....+..++|++||.|.||..+.- ..|..-.--|||.||+|-+-
T Consensus 227 vh~vT~~~f~~~~~~SlTlDelLslfasskElt~~~p-----------------------k~pk~~~ekll~dhlnr~~s 283 (610)
T COG5407 227 VHFVTMEMFYERIDGSLTLDELLSLFASSKELTRMNP-----------------------KGPKCTLEKLLGDHLNRARS 283 (610)
T ss_pred eeeeeHHHHHHhhcccchHHHHHHHHhhhHHHHHhCC-----------------------CCCchhHHHHHHHHHhHhhc
Confidence 5667899999888888899999999999999865521 12223345599999999887
Q ss_pred CCCcccchHHHHHHhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHccccCC-CCccccCCCCCHHHHHHHHhCCC-ch
Q 000129 1088 EGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSV-QTPLRQFNGIPNEILMKLEKKDF-AW 1165 (2114)
Q Consensus 1088 ~~~~l~~d~~~i~~~a~rl~~a~~ei~~~~~~~~~~~~~~~l~~~~~~~~w~~-~~~l~q~~~~~~~~~~~l~~~~~-~~ 1165 (2114)
..|. ...|..+..-++.||.+|+...+.+..+..++++-|+|.|.+--+ ..|+.|+|+...+-++++--+.| ++
T Consensus 284 ~~fn----~~ri~s~~~~ll~aLL~ia~~F~f~~~~~g~~n~~q~iVqAiPld~~f~ilQlp~~d~E~~~~~s~r~I~~~ 359 (610)
T COG5407 284 VEFN----EYRIKSNVEGLLGALLRIASNFAFPLKECGKENKGQYIVQAIPLDHLFRILQLPRSDVEYAQRVSLRLIEGM 359 (610)
T ss_pred ccch----heehhhhhHHHHHHHHHHHhhccCCchhhccchhhheeeEeccCCCCchhhcccchhHHHHHHhhhhhhhhh
Confidence 6666 466888899999999999999999999999999999999999776 68999999999988877765555 45
Q ss_pred hhhccCChHHhhhhhcCc-h-hHHHHHHHHhcCCceeE
Q 000129 1166 ERYYDLSPQELGELIRFP-K-MGRTLHKFVHQFPKLIL 1201 (2114)
Q Consensus 1166 ~~~~~~~~~~~~~~~~~~-~-~~~~i~~~~~~~P~~~~ 1201 (2114)
..+..|...+.++.+++- . ..+.+.+.++.+|++.+
T Consensus 360 ~~~~sL~~~~~g~vl~n~~~~~l~e~~~va~gIPr~~~ 397 (610)
T COG5407 360 KAIGSLIAKRYGNVLKNLVVLELMEIQAVADGIPRYFL 397 (610)
T ss_pred hhHhhHHHHHHhhhhhhHHHHHHHHHHHHhcCCCceEE
Confidence 678888999999998743 2 23678888999999876
No 320
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.33 E-value=3.5e-06 Score=102.29 Aligned_cols=73 Identities=19% Similarity=0.292 Sum_probs=56.4
Q ss_pred CCCCCHHHHHHHHHHH---cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCC-CceEEEEEcccHHHHHHHHHHHHH
Q 000129 1339 FKHFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASET-GVMRAVYIAPLEALAKERYRDWEI 1412 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il---~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~-~~~k~l~I~Ptr~La~q~~~~~~~ 1412 (2114)
|. ++|.|.+....++ ..++++++.||||+|||+++++|++..+...... .+.+++|.++|..+..|....+++
T Consensus 7 y~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 7 YE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 54 5999999665543 4567899999999999999999998776652221 123899999999999988777764
No 321
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.33 E-value=3.5e-06 Score=102.29 Aligned_cols=73 Identities=19% Similarity=0.292 Sum_probs=56.4
Q ss_pred CCCCCHHHHHHHHHHH---cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCC-CceEEEEEcccHHHHHHHHHHHHH
Q 000129 1339 FKHFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASET-GVMRAVYIAPLEALAKERYRDWEI 1412 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il---~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~-~~~k~l~I~Ptr~La~q~~~~~~~ 1412 (2114)
|. ++|.|.+....++ ..++++++.||||+|||+++++|++..+...... .+.+++|.++|..+..|....+++
T Consensus 7 y~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 7 YE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 54 5999999665543 4567899999999999999999998776652221 123899999999999988777764
No 322
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.21 E-value=8.4e-05 Score=103.46 Aligned_cols=137 Identities=19% Similarity=0.201 Sum_probs=81.8
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccC
Q 000129 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLT 591 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~ 591 (2114)
..-+|.=-||||||+.....+-..+.. ...+++++|+-++.|-.|..+.|+.+..... .+. -..+...-
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~---------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~-~~~-~~~s~~~L 342 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLEL---------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAF-NDP-KAESTSEL 342 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhc---------cCCCeEEEEechHHHHHHHHHHHHHHHHhhh-hcc-cccCHHHH
Confidence 358999999999999865544333322 1356999999999999999999988643221 111 11111111
Q ss_pred hhhhc--cceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEccc
Q 000129 592 RQQIE--ETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2114)
Q Consensus 592 ~~~~~--~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSAT 669 (2114)
++.+. ...|||||-.|+............-.+=-+||+||||+-.. |..- .++ ...-++...+|+|.|
T Consensus 343 k~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~--G~~~----~~~----~~~~~~a~~~gFTGT 412 (962)
T COG0610 343 KELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQY--GELA----KLL----KKALKKAIFIGFTGT 412 (962)
T ss_pred HHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccc--cHHH----HHH----HHHhccceEEEeeCC
Confidence 12222 35899999999854443321111111223789999997432 2211 111 112345788999999
No 323
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.11 E-value=6.1e-05 Score=100.42 Aligned_cols=111 Identities=15% Similarity=0.151 Sum_probs=71.6
Q ss_pred EEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcC-Cccc-chhhcc
Q 000129 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTG-ETAM-DLKLLE 1437 (2114)
Q Consensus 1360 vli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G-~~~~-~~~~l~ 1437 (2114)
-|.-..||-|||+++.+|+.-.... +. .+-+|+..--||..=+..+. .+-..+|++|++... +.+. ..+..-
T Consensus 185 ~IAEM~TGEGKTLvAtlp~yLnAL~---Gk--gVHvVTVNDYLA~RDaewmg-ply~fLGLsvg~i~~~~~~~~~rr~aY 258 (1112)
T PRK12901 185 KIAEMATGEGKTLVATLPVYLNALT---GN--GVHVVTVNDYLAKRDSEWMG-PLYEFHGLSVDCIDKHQPNSEARRKAY 258 (1112)
T ss_pred ceeeecCCCCchhHHHHHHHHHHHc---CC--CcEEEEechhhhhccHHHHH-HHHHHhCCceeecCCCCCCHHHHHHhC
Confidence 4788999999999999998755554 32 24455666667765444333 333457999998865 3333 344555
Q ss_pred CCcEEEEChhhHH-HHHhh-hc---ccccccceeEEEecccccc
Q 000129 1438 KGQIIISTPEKWD-ALSRR-WK---QRKYVQQVSLFIIDELHLI 1476 (2114)
Q Consensus 1438 ~~~IIV~TPe~l~-~l~r~-~~---~~~~l~~v~liIiDEaH~l 1476 (2114)
.+||.++|..-|- ..+|. .. .....+.+.+.||||+|.+
T Consensus 259 ~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSI 302 (1112)
T PRK12901 259 NADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSV 302 (1112)
T ss_pred CCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhh
Confidence 7799999988751 12221 11 1223445889999999954
No 324
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.11 E-value=0.00081 Score=84.49 Aligned_cols=302 Identities=15% Similarity=0.188 Sum_probs=178.1
Q ss_pred CCcEEEEEcccHHHHHHHHHHHHHhhcc-------------CCcE-------E-------------EEEeCCCc------
Q 000129 549 SNYKIVYVAPMKALVAEVVGNLSNRLQM-------------YDVK-------V-------------RELSGDQT------ 589 (2114)
Q Consensus 549 ~~~kil~iaP~raLa~q~~~~~~~~~~~-------------~gi~-------v-------------~~l~Gd~~------ 589 (2114)
..+|||+|+|+|..|-++++.+.+++.. +|+. . ..+.|..+
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 4679999999999999999988876643 1200 0 00111110
Q ss_pred --cChh------hhccceEEEcCHhHHHHHHh----ccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHH---
Q 000129 590 --LTRQ------QIEETQIIVTTPEKWDIITR----KSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQI--- 654 (2114)
Q Consensus 590 --~~~~------~~~~~~IiV~TPek~d~l~r----~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~--- 654 (2114)
+++. ....+|||||+|=-+..+.. +..+..+++.+.++|||.+|.+.-..-..+..++..+-..-
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~ 195 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKS 195 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCC
Confidence 0000 12368999999987754444 34566789999999999999875433334444444331100
Q ss_pred --------------hhccccccEEEEccccCChHHHHHHHhc--cccCceEeecCCc--------ccccceeEEEeeccC
Q 000129 655 --------------ETTKEHIRLVGLSATLPNYEDVALFLRV--NLEKGLFYFDNSY--------RPVPLSQQYIGIQVK 710 (2114)
Q Consensus 655 --------------~~~~~~~riv~lSATlpn~~dva~~l~~--~~~~~~~~f~~~~--------rpv~l~~~~~~~~~~ 710 (2114)
.....-.|.|++|+... + ++...++. ....|...+...+ -.+++.|.+..+...
T Consensus 196 ~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~-p-e~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~ 273 (442)
T PF06862_consen 196 HDTDFSRVRPWYLDGQAKYYRQTIIFSSFQT-P-EINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCS 273 (442)
T ss_pred CCCCHHHHHHHHHcCcchheeEeEEecCCCC-H-HHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCC
Confidence 00122458999999853 3 33333322 1112222221111 234666777766654
Q ss_pred ch----hHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCc
Q 000129 711 KP----LQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKS 786 (2114)
Q Consensus 711 ~~----~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~ 786 (2114)
.. ..+++...+.++..+......+.+|||++|--+=..+-..|+....
T Consensus 274 s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~---------------------------- 325 (442)
T PF06862_consen 274 SPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENI---------------------------- 325 (442)
T ss_pred CcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCC----------------------------
Confidence 43 3344444444444444333367899999998888777777764322
Q ss_pred chhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHh--hhhcCCCceEEEEecceeccCCCCccccCCHHHH
Q 000129 787 NDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATL--AWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDI 864 (2114)
Q Consensus 787 ~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tl--a~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~ 864 (2114)
.++..|--.+..+-...-..|.+|+.+||+-|-=+ =+-..+.++..||- |.+|.. +.=..++
T Consensus 326 ---------sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viF----Y~~P~~---p~fY~El 389 (442)
T PF06862_consen 326 ---------SFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIF----YGPPEN---PQFYSEL 389 (442)
T ss_pred ---------eEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEE----ECCCCC---hhHHHHH
Confidence 24445677778888888899999999999999643 34566777888886 555541 1124455
Q ss_pred HHhhcccCC-CCCCCceEEEEEcCCCcHHHHHH
Q 000129 865 MQMLGRAGR-PQYDSYGEGIIITGHSELRYYLS 896 (2114)
Q Consensus 865 ~Qr~GRAGR-~g~d~~G~~iil~~~~e~~~~~~ 896 (2114)
+.+++.... .+....+.|.++++.-+.-.+..
T Consensus 390 ~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LEr 422 (442)
T PF06862_consen 390 LNMLDESSGGEVDAADATVTVLYSKYDALRLER 422 (442)
T ss_pred HhhhcccccccccccCceEEEEecHhHHHHHHH
Confidence 566555433 11223567778877655444443
No 325
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.09 E-value=0.00011 Score=88.59 Aligned_cols=131 Identities=21% Similarity=0.251 Sum_probs=88.1
Q ss_pred CCCHHHHHHHHHHHcCCC----cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 495 QLNRVQSRVYKSALSSAD----NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~----nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.|-|+|.+-+.-+....+ --|+.-.-|.|||..+.-.++..... ...++++|+.|| .|+..++
T Consensus 184 ~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~~r------------a~tLVvaP~VAl-mQW~nEI 250 (791)
T KOG1002|consen 184 PLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEVDR------------APTLVVAPTVAL-MQWKNEI 250 (791)
T ss_pred cchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhcccc------------CCeeEEccHHHH-HHHHHHH
Confidence 345667666544322211 14677899999999876655553322 258999999997 5677777
Q ss_pred HHhhccCCcEEEEEeCCCccC-hhhhccceEEEcCHhHHHHHHhcc-----------CCCccccccc--EEEEecccccc
Q 000129 571 SNRLQMYDVKVRELSGDQTLT-RQQIEETQIIVTTPEKWDIITRKS-----------GDRTYTQLVK--LLIIDEIHLLH 636 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~-~~~~~~~~IiV~TPek~d~l~r~~-----------~~~~~l~~v~--liIiDEaH~l~ 636 (2114)
.+... -..+|-.++|..... -+.+.+++++.||...+....|+. ...+.+..++ -||+||||-+.
T Consensus 251 ~~~T~-gslkv~~YhG~~R~~nikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK 329 (791)
T KOG1002|consen 251 ERHTS-GSLKVYIYHGAKRDKNIKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIK 329 (791)
T ss_pred HHhcc-CceEEEEEecccccCCHHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccc
Confidence 66544 357888999865433 356779999999998887777662 1223444444 59999999987
Q ss_pred cCC
Q 000129 637 DNR 639 (2114)
Q Consensus 637 d~r 639 (2114)
+.+
T Consensus 330 ~R~ 332 (791)
T KOG1002|consen 330 DRQ 332 (791)
T ss_pred ccc
Confidence 643
No 326
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=97.96 E-value=0.00026 Score=93.98 Aligned_cols=100 Identities=20% Similarity=0.203 Sum_probs=72.1
Q ss_pred hHhhhhHHHHHHHhccceE--eecCCCCHHHHHHHHHHHhcC-CceEEE-ecCccccccCCCCcEEEEEeeeEecCCcCc
Q 000129 1619 FIDNIQEEMLKATLRHGVG--YLHEGLNKTDQEVVSALFEAG-KIKVCV-MSSSMCWGVPLTAHLVVVMGTQYYDGQENA 1694 (2114)
Q Consensus 1619 ~~~~i~d~~L~~~l~~gV~--~~H~~ls~~dR~~v~~~F~~g-~i~VLV-aT~~la~Gvdip~~~vVI~gt~~yd~~~~~ 1694 (2114)
.++-+.+..++..+ ..|. .+.|..++.+|..+.++|.++ .|+||+ +|.+.+-|+|+.+...|| -+
T Consensus 1352 mlDlVekDL~k~~m-psVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVV----------Fv 1420 (1549)
T KOG0392|consen 1352 MLDLVEKDLFKKYM-PSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVV----------FV 1420 (1549)
T ss_pred HHHHHHHHHhhhhc-CceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEE----------EE
Confidence 34444444444433 3455 678999999999999999999 888765 578999999999766666 12
Q ss_pred CCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCc
Q 000129 1695 HTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1695 ~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~ 1729 (2114)
.=+.++..=+|-+-||-|-|..+.-.+|.+.....
T Consensus 1421 EHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGT 1455 (1549)
T KOG0392|consen 1421 EHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGT 1455 (1549)
T ss_pred ecCCCchhhHHHHHHHHhhcCceeeeeeeehhccc
Confidence 23444455599999999987667777777776654
No 327
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.96 E-value=4.8e-05 Score=89.99 Aligned_cols=127 Identities=16% Similarity=0.133 Sum_probs=93.1
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.|++.|.-+.-.+..+ -|+...||=|||+++.++..-....+ ..|=+++...-||..=++.+..++
T Consensus 77 ~p~~vQll~~l~L~~G---~laEm~TGEGKTli~~l~a~~~AL~G-----------~~V~vvT~NdyLA~RD~~~~~~~y 142 (266)
T PF07517_consen 77 RPYDVQLLGALALHKG---RLAEMKTGEGKTLIAALPAALNALQG-----------KGVHVVTSNDYLAKRDAEEMRPFY 142 (266)
T ss_dssp ---HHHHHHHHHHHTT---SEEEESTTSHHHHHHHHHHHHHHTTS-----------S-EEEEESSHHHHHHHHHHHHHHH
T ss_pred cccHHHHhhhhhcccc---eeEEecCCCCcHHHHHHHHHHHHHhc-----------CCcEEEeccHHHhhccHHHHHHHH
Confidence 6788998888655333 38999999999999988776655443 268888999999999999999999
Q ss_pred ccCCcEEEEEeCCCccCh-hhhccceEEEcCHhHH--HHHHhccCC---CcccccccEEEEeccccc
Q 000129 575 QMYDVKVRELSGDQTLTR-QQIEETQIIVTTPEKW--DIITRKSGD---RTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~-~~~~~~~IiV~TPek~--d~l~r~~~~---~~~l~~v~liIiDEaH~l 635 (2114)
..+|++|+..+++.+... +..-.++|+++|...+ |.+..+... ........++||||||.+
T Consensus 143 ~~LGlsv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~ 209 (266)
T PF07517_consen 143 EFLGLSVGIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSI 209 (266)
T ss_dssp HHTT--EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHH
T ss_pred HHhhhccccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceE
Confidence 999999999999876443 3345789999999986 555544321 123467899999999965
No 328
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=0.00023 Score=87.16 Aligned_cols=348 Identities=18% Similarity=0.208 Sum_probs=193.1
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCC---ch--HHHHHHHHHHHHHhccCC----------C--C--------CCCC
Q 000129 494 TQLNRVQSRVYKSALSSADNILLCAPTGA---GK--TNVAVLTILQQLALNRND----------D--G--------SFNH 548 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGs---GK--T~~a~l~il~~l~~~~~~----------~--g--------~~~~ 548 (2114)
..+++.|.+.+..+++=.+ ++ .||++ |+ +-+|.+-+++++.+.+.. . | .-..
T Consensus 215 ~pltalQ~~L~~~m~~YrD-l~--y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~ 291 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRD-LL--YPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGF 291 (698)
T ss_pred CcchHHHHHHHHHHHhhhh-hc--cccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCC
Confidence 3689999999987766555 44 45554 44 567778888877653310 0 1 0112
Q ss_pred CCcEEEEEcccHHHHHHHHHHHHHhhccCCc----------EEEEEeCCCcc----------------------------
Q 000129 549 SNYKIVYVAPMKALVAEVVGNLSNRLQMYDV----------KVRELSGDQTL---------------------------- 590 (2114)
Q Consensus 549 ~~~kil~iaP~raLa~q~~~~~~~~~~~~gi----------~v~~l~Gd~~~---------------------------- 590 (2114)
..+|||+++|+|+-|-.++..+..++....- --+++.|+...
T Consensus 292 tRpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ 371 (698)
T KOG2340|consen 292 TRPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLA 371 (698)
T ss_pred CCceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHH
Confidence 4679999999999999999999887542110 01233332110
Q ss_pred -Chh------hhccceEEEcCHhHHHHHHh----ccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHh----
Q 000129 591 -TRQ------QIEETQIIVTTPEKWDIITR----KSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIE---- 655 (2114)
Q Consensus 591 -~~~------~~~~~~IiV~TPek~d~l~r----~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~---- 655 (2114)
++. ....++|+||+|=-+.++.. +..+..+++.+.++|||-+|.+.-..-..+..|+..+-.+=.
T Consensus 372 ftkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEhl~~ifdHLn~~P~k~h~ 451 (698)
T KOG2340|consen 372 FTKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEHLLHIFDHLNLQPSKQHD 451 (698)
T ss_pred HHHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHhhcCcccccC
Confidence 010 12468999999988876665 334577899999999999998875443444445544421100
Q ss_pred -------------hccccccEEEEccccCChHHHHHHHhccc--cCceEee-----cCCcc--cccceeEEEeeccCch-
Q 000129 656 -------------TTKEHIRLVGLSATLPNYEDVALFLRVNL--EKGLFYF-----DNSYR--PVPLSQQYIGIQVKKP- 712 (2114)
Q Consensus 656 -------------~~~~~~riv~lSATlpn~~dva~~l~~~~--~~~~~~f-----~~~~r--pv~l~~~~~~~~~~~~- 712 (2114)
+...-.|.+++|+-. + .++..++.... -.|...+ .++.+ -+|+.|.+..+.....
T Consensus 452 ~DfSRVR~wyL~~qsr~~rQtl~Fs~y~-~-~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~ 529 (698)
T KOG2340|consen 452 VDFSRVRMWYLDGQSRYFRQTLLFSRYS-H-PLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSII 529 (698)
T ss_pred CChhheehheeccHHHHHHHHHHHHhhc-c-HHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcc
Confidence 000122455555542 1 23333332110 0111111 11222 2344444433333222
Q ss_pred ---hHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchh
Q 000129 713 ---LQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDL 789 (2114)
Q Consensus 713 ---~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L 789 (2114)
..++......+.-.+... ...-+||+++|--.-.++-.++++....-..+
T Consensus 530 ~~~D~RFkyFv~~ImPq~~k~-t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i-------------------------- 582 (698)
T KOG2340|consen 530 ETPDARFKYFVDKIMPQLIKR-TESGILIYIPSYFDFVRVRNYMKKEEISFVMI-------------------------- 582 (698)
T ss_pred cCchHHHHHHHHhhchhhccc-ccCceEEEecchhhHHHHHHHhhhhhcchHHH--------------------------
Confidence 223322222111111111 13468999999888888777777654221111
Q ss_pred hhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechH--hhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHh
Q 000129 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTAT--LAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQM 867 (2114)
Q Consensus 790 ~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~t--la~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr 867 (2114)
|---+...-...-+.|-.|...||+-|-- .-+--++.++.-||.+..|-+|. =..+++.|
T Consensus 583 -----------~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP~~P~-------FYsEiinm 644 (698)
T KOG2340|consen 583 -----------NEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPPNNPH-------FYSEIINM 644 (698)
T ss_pred -----------hhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecCCCCcH-------HHHHHHhh
Confidence 11112222334557899999999999964 34567888998888844444433 35789999
Q ss_pred hcccCCCC--CCCceEEEEEcCCCcH
Q 000129 868 LGRAGRPQ--YDSYGEGIIITGHSEL 891 (2114)
Q Consensus 868 ~GRAGR~g--~d~~G~~iil~~~~e~ 891 (2114)
.||+.--| ......|.++++.-+.
T Consensus 645 ~~k~~~~gn~d~d~~t~~ilytKyD~ 670 (698)
T KOG2340|consen 645 SDKTTSQGNTDLDIFTVRILYTKYDR 670 (698)
T ss_pred hhhhhccCCccccceEEEEEeechhh
Confidence 99875433 3345667777776443
No 329
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.91 E-value=0.00045 Score=87.21 Aligned_cols=161 Identities=18% Similarity=0.258 Sum_probs=105.5
Q ss_pred CCCHHHHHHHHHHHcC----CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 495 QLNRVQSRVYKSALSS----ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~----~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.+-|.|..++.-+.-. ..--|+...-|-|||+...-.|+..-.......+..+... +.+||+|. +|+.|+..++
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~-~TLII~Pa-Sli~qW~~Ev 402 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESAS-KTLIICPA-SLIHQWEAEV 402 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccC-CeEEeCcH-HHHHHHHHHH
Confidence 6778999998755422 1236777888999999766556554333222223233333 69999996 6789999999
Q ss_pred HHhhccCCcEEEEEeCCC--ccChhhhccceEEEcCHhHHHHHHh-------ccCCCcccccc--cEEEEecccccccCC
Q 000129 571 SNRLQMYDVKVRELSGDQ--TLTRQQIEETQIIVTTPEKWDIITR-------KSGDRTYTQLV--KLLIIDEIHLLHDNR 639 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~--~~~~~~~~~~~IiV~TPek~d~l~r-------~~~~~~~l~~v--~liIiDEaH~l~d~r 639 (2114)
.+++..--++|..++|.. ......+..++|+|||..- +.+ ..+....+..| .-||+||||.+.+..
T Consensus 403 ~~rl~~n~LsV~~~HG~n~r~i~~~~L~~YDvViTTY~l---va~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~ 479 (901)
T KOG4439|consen 403 ARRLEQNALSVYLYHGPNKREISAKELRKYDVVITTYNL---VANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNSN 479 (901)
T ss_pred HHHHhhcceEEEEecCCccccCCHHHHhhcceEEEeeec---cccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcccc
Confidence 999988889999999986 3344567899999999863 222 22223334344 469999999986533
Q ss_pred chhHHHHHHHHHHHHhhccccccEEEEccc
Q 000129 640 GPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2114)
Q Consensus 640 g~~le~iv~rl~~~~~~~~~~~riv~lSAT 669 (2114)
. .-...+.++ ....| -++|+|
T Consensus 480 t-q~S~AVC~L-------~a~~R-WclTGT 500 (901)
T KOG4439|consen 480 T-QCSKAVCKL-------SAKSR-WCLTGT 500 (901)
T ss_pred h-hHHHHHHHH-------hhcce-eecccC
Confidence 2 222223333 23334 677888
No 330
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.80 E-value=0.0018 Score=82.12 Aligned_cols=137 Identities=21% Similarity=0.247 Sum_probs=94.2
Q ss_pred CCCHHHHHHHHHHHc----CCCcEEEEecCCCchHHHHHHHHHHH-hhhc-----cCCCceEEEEEcccHHHHHHHHHHH
Q 000129 1341 HFNPIQTQVFTVLYN----TDDNVLVAAPTGSGKTICSEFAILRN-HQKA-----SETGVMRAVYIAPLEALAKERYRDW 1410 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~----~~~nvli~ApTGSGKTl~~~l~il~~-l~~~-----~~~~~~k~l~I~Ptr~La~q~~~~~ 1410 (2114)
.+-|.|..++.-+.- ...--|+...-|-|||+...-.|+.. .... .+... +.|||+|- .|+.|++.++
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~-~TLII~Pa-Sli~qW~~Ev 402 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESAS-KTLIICPA-SLIHQWEAEV 402 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccC-CeEEeCcH-HHHHHHHHHH
Confidence 678999999887652 22347888999999998654333322 1111 11112 58999995 6889999999
Q ss_pred HHHhcCCCCcEEEEEcCCcc--cchhhccCCcEEEEChhhHHH----HHhhhcccccccce--eEEEecccccccCCC
Q 000129 1411 EIKFGQGLGMRVVELTGETA--MDLKLLEKGQIIISTPEKWDA----LSRRWKQRKYVQQV--SLFIIDELHLIGGQG 1480 (2114)
Q Consensus 1411 ~~~f~~~~g~~v~~l~G~~~--~~~~~l~~~~IIV~TPe~l~~----l~r~~~~~~~l~~v--~liIiDEaH~l~~~~ 1480 (2114)
.+++... -++|..++|... ...+.+.+.||||+|..-... -+........+.+| .-||+||||.+-+..
T Consensus 403 ~~rl~~n-~LsV~~~HG~n~r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~ 479 (901)
T KOG4439|consen 403 ARRLEQN-ALSVYLYHGPNKREISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNSN 479 (901)
T ss_pred HHHHhhc-ceEEEEecCCccccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcccc
Confidence 9888875 689999999864 346788899999999876543 22222223344444 569999999987543
No 331
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.79 E-value=0.0048 Score=77.76 Aligned_cols=253 Identities=13% Similarity=0.132 Sum_probs=140.6
Q ss_pred cCCcEEEEChhhHHHHHhh----hcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHh----------------
Q 000129 1437 EKGQIIISTPEKWDALSRR----WKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIAS---------------- 1496 (2114)
Q Consensus 1437 ~~~~IIV~TPe~l~~l~r~----~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~---------------- 1496 (2114)
-++|||||+|=-|-.++.. -.....+++|.++|+|.||.+.-..-..+..++..+...-.
T Consensus 130 y~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ld 209 (442)
T PF06862_consen 130 YSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLD 209 (442)
T ss_pred ccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHc
Confidence 4679999999876655542 12234799999999999997653322222333333221110
Q ss_pred -hcCCCceEEEEcccCCChhHHHHHhcC---CCCceeecCCCCC--------ccCcEEEEecccccch----HHHHHhcC
Q 000129 1497 -QVENKIRIVALSTSLANAKDLGEWIGA---TSHGLFNFPPGVR--------PVPLEIHIQGVDITNF----EARMQAMT 1560 (2114)
Q Consensus 1497 -~~~~~~riV~lSATl~n~~dla~wl~~---~~~~~~~f~~~~r--------pv~l~~~~~~~~~~~~----~~~~~~~~ 1560 (2114)
+...-.|.|++|+... ++ +...+.. +..+...+.+... .+++...+..++.... ..++....
T Consensus 210 g~a~~~RQtii~S~~~~-pe-~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~ 287 (442)
T PF06862_consen 210 GQAKYYRQTIIFSSFQT-PE-INSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFT 287 (442)
T ss_pred CcchheeEeEEecCCCC-HH-HHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHH
Confidence 1111368999998763 22 2222222 1111111111111 2233334444433332 23333334
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeec
Q 000129 1561 KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLH 1640 (2114)
Q Consensus 1561 ~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H 1640 (2114)
+..+..+.. -...+.+|||+||--+=..+-..|. .-....+.+|
T Consensus 288 ~~iLP~l~~-~~~~~~~LIfIPSYfDfVRlRN~lk-----------------------------------~~~~sF~~i~ 331 (442)
T PF06862_consen 288 KKILPQLKR-DSKMSGTLIFIPSYFDFVRLRNYLK-----------------------------------KENISFVQIS 331 (442)
T ss_pred HHHHHHhhh-ccCCCcEEEEecchhhhHHHHHHHH-----------------------------------hcCCeEEEec
Confidence 444444432 1456789999999755444433331 1122356778
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEecCcc--ccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHH---HHhHcccCC-CC
Q 000129 1641 EGLNKTDQEVVSALFEAGKIKVCVMSSSM--CWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDL---LQMMGHASR-PL 1714 (2114)
Q Consensus 1641 ~~ls~~dR~~v~~~F~~g~i~VLVaT~~l--a~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~---lQr~GRAGR-~~ 1714 (2114)
.-.+..+-...-..|.+|+.+||+.|.=+ =+-..+.++..|| -|..|..+.=| +.|++.... .+
T Consensus 332 EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~vi----------FY~~P~~p~fY~El~n~~~~~~~~~~ 401 (442)
T PF06862_consen 332 EYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVI----------FYGPPENPQFYSELLNMLDESSGGEV 401 (442)
T ss_pred ccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEE----------EECCCCChhHHHHHHhhhcccccccc
Confidence 88999999999999999999999999532 2334566777777 35555555444 444443332 11
Q ss_pred CCCceEEEEEeecCcHHHHHHHH
Q 000129 1715 LDNSGKCVILCHAPRKEYYKKFL 1737 (2114)
Q Consensus 1715 ~~~~G~~iil~~~~~~~~~~~~l 1737 (2114)
....+.|.++++.-+.-.+++++
T Consensus 402 ~~~~~~~~~lysk~D~~~LErIV 424 (442)
T PF06862_consen 402 DAADATVTVLYSKYDALRLERIV 424 (442)
T ss_pred cccCceEEEEecHhHHHHHHHHh
Confidence 13467888888877766666555
No 332
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.78 E-value=9.3e-05 Score=87.40 Aligned_cols=70 Identities=19% Similarity=0.255 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhh-----hccCCCceEEEEEcccHHHHHHHHHHHHH
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQ-----KASETGVMRAVYIAPLEALAKERYRDWEI 1412 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~-----~~~~~~~~k~l~I~Ptr~La~q~~~~~~~ 1412 (2114)
++|+-|.+|+..++....-.+|.||.|+|||.+..-.+...+. ....++ ++++++|+...++++..++.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~--~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGK--KILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS---EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccc--cceeecCCchhHHHHHHHHHh
Confidence 4799999999999875545899999999999665444443321 122344 999999999999999999885
No 333
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.77 E-value=0.00058 Score=90.40 Aligned_cols=111 Identities=15% Similarity=0.147 Sum_probs=82.5
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccCh-
Q 000129 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR- 592 (2114)
Q Consensus 514 vlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~- 592 (2114)
-+.-.-||=|||+++.+|+.-....+. .+-++...-=||.--......++..+|++|+....+++...
T Consensus 96 ~iaEM~TGEGKTL~atlp~ylnaL~gk-----------gVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~~~~~m~~~ek 164 (822)
T COG0653 96 DIAEMRTGEGKTLVATLPAYLNALAGK-----------GVHVVTVNDYLARRDAEWMGPLYEFLGLSVGVILAGMSPEEK 164 (822)
T ss_pred ceeeeecCCchHHHHHHHHHHHhcCCC-----------CcEEeeehHHhhhhCHHHHHHHHHHcCCceeeccCCCChHHH
Confidence 578899999999999998765444331 46777788888888888889999999999999888876553
Q ss_pred hhhccceEEEcCHhHH--HHHHhcc---CCCcccccccEEEEeccccc
Q 000129 593 QQIEETQIIVTTPEKW--DIITRKS---GDRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 593 ~~~~~~~IiV~TPek~--d~l~r~~---~~~~~l~~v~liIiDEaH~l 635 (2114)
+..-.++|..+|--.+ |.+.-.. .+..+.....+-|+||++.+
T Consensus 165 ~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSI 212 (822)
T COG0653 165 RAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSI 212 (822)
T ss_pred HHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhe
Confidence 3455899999998764 4332221 12244556788999999865
No 334
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.77 E-value=0.00015 Score=97.89 Aligned_cols=143 Identities=16% Similarity=0.214 Sum_probs=85.4
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHH-----HHhcCC-CC--cEEEEEcCCc
Q 000129 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE-----IKFGQG-LG--MRVVELTGET 1429 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~-----~~f~~~-~g--~~v~~l~G~~ 1429 (2114)
-|+.+..+||+|||.+|+-.|+..... .+..+.|++||+.++-..+.+-+. ..|... .| +....+.+..
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~---~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k 136 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQK---YGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGD 136 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHH---cCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCc
Confidence 479999999999999998888877666 233389999999999887775543 334332 12 3333443322
Q ss_pred ---------ccchhhcc--------CCcEEEEChhhHHHH-H-hhh------ccc-cc---ccce-eEEEecccccccCC
Q 000129 1430 ---------AMDLKLLE--------KGQIIISTPEKWDAL-S-RRW------KQR-KY---VQQV-SLFIIDELHLIGGQ 1479 (2114)
Q Consensus 1430 ---------~~~~~~l~--------~~~IIV~TPe~l~~l-~-r~~------~~~-~~---l~~v-~liIiDEaH~l~~~ 1479 (2114)
....+.+. .-+|.|+|.+.+..- . +.. ... .. ++.. -.||+||.|++...
T Consensus 137 ~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~ 216 (986)
T PRK15483 137 KKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD 216 (986)
T ss_pred ccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc
Confidence 11111111 237999999987542 1 111 011 11 2222 37899999999542
Q ss_pred CCchHHHHHHHHHHHHhhcCCCceEEEEcccCCC
Q 000129 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (2114)
Q Consensus 1480 ~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n 1513 (2114)
+..++.+ ..+ ++.-++.+|||.++
T Consensus 217 -~k~~~~i----~~l-----npl~~lrysAT~~~ 240 (986)
T PRK15483 217 -NKFYQAI----EAL-----KPQMIIRFGATFPD 240 (986)
T ss_pred -hHHHHHH----Hhc-----CcccEEEEeeecCC
Confidence 2233222 222 24446779999976
No 335
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.76 E-value=0.00026 Score=95.57 Aligned_cols=142 Identities=20% Similarity=0.309 Sum_probs=83.6
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH-----Hhhcc-C-C--cEEE
Q 000129 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS-----NRLQM-Y-D--VKVR 582 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~-----~~~~~-~-g--i~v~ 582 (2114)
-|+.+.++||+|||.+|+-+|+....... -.+.|+++|+.|+-.-+...+. ..|.. + | +...
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~---------~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~ 130 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYG---------LFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELY 130 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcC---------CcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEE
Confidence 37999999999999999999988766542 3489999999998776665443 22321 1 2 3344
Q ss_pred EEeCCC-------ccChh----------hhccceEEEcCHhHHHH--HHhccCC------C-ccc---ccc-cEEEEecc
Q 000129 583 ELSGDQ-------TLTRQ----------QIEETQIIVTTPEKWDI--ITRKSGD------R-TYT---QLV-KLLIIDEI 632 (2114)
Q Consensus 583 ~l~Gd~-------~~~~~----------~~~~~~IiV~TPek~d~--l~r~~~~------~-~~l---~~v-~liIiDEa 632 (2114)
.+.+.. .+... .....+|+|+|-+.+.. ..+...+ . ..+ ... -.||+||.
T Consensus 131 ~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEP 210 (986)
T PRK15483 131 VINAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEP 210 (986)
T ss_pred EEecCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECC
Confidence 444322 11111 01146899999998732 2121101 0 111 112 27899999
Q ss_pred cccccCCchhHHHHHHHHHHHHhhccccccEEEEccccCC
Q 000129 633 HLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN 672 (2114)
Q Consensus 633 H~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn 672 (2114)
|++... +..++.| ....+. -++.+|||.++
T Consensus 211 h~~~~~-~k~~~~i--------~~lnpl-~~lrysAT~~~ 240 (986)
T PRK15483 211 HRFPRD-NKFYQAI--------EALKPQ-MIIRFGATFPD 240 (986)
T ss_pred CCCCcc-hHHHHHH--------HhcCcc-cEEEEeeecCC
Confidence 998532 2234333 222332 35669999986
No 336
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.72 E-value=0.00017 Score=82.15 Aligned_cols=148 Identities=24% Similarity=0.291 Sum_probs=75.9
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHH---HHHHHHhc
Q 000129 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY---RDWEIKFG 1415 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~---~~~~~~f~ 1415 (2114)
++-.|+-|..++.++++ .+.+++.||.|||||+++..+.++.+.. ..-. +++|+-|..+...++- ....+++.
T Consensus 2 I~p~~~~Q~~~~~al~~-~~~v~~~G~AGTGKT~LA~a~Al~~v~~-g~~~--kiii~Rp~v~~~~~lGflpG~~~eK~~ 77 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLN-NDLVIVNGPAGTGKTFLALAAALELVKE-GEYD--KIIITRPPVEAGEDLGFLPGDLEEKME 77 (205)
T ss_dssp ----SHHHHHHHHHHHH--SEEEEE--TTSSTTHHHHHHHHHHHHT-TS-S--EEEEEE-S--TT----SS---------
T ss_pred ccCCCHHHHHHHHHHHh-CCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCc--EEEEEecCCCCccccccCCCCHHHHHH
Confidence 34578999999999994 6679999999999999999999988877 3444 8899988765421110 00001111
Q ss_pred CCCCc---EEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHH
Q 000129 1416 QGLGM---RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMR 1492 (2114)
Q Consensus 1416 ~~~g~---~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~ 1492 (2114)
....- ....+.+. ..-...+.++.|-+.++.- +|- + .+.+ .+||+|||+.+. ...++
T Consensus 78 p~~~p~~d~l~~~~~~-~~~~~~~~~~~Ie~~~~~~----iRG---r-t~~~-~~iIvDEaQN~t----------~~~~k 137 (205)
T PF02562_consen 78 PYLRPIYDALEELFGK-EKLEELIQNGKIEIEPLAF----IRG---R-TFDN-AFIIVDEAQNLT----------PEELK 137 (205)
T ss_dssp TTTHHHHHHHTTTS-T-TCHHHHHHTTSEEEEEGGG----GTT------B-S-EEEEE-SGGG------------HHHHH
T ss_pred HHHHHHHHHHHHHhCh-HhHHHHhhcCeEEEEehhh----hcC---c-cccc-eEEEEecccCCC----------HHHHH
Confidence 00000 00000011 1112234456677776543 222 2 2333 899999999773 45566
Q ss_pred HHHhhcCCCceEEEEccc
Q 000129 1493 YIASQVENKIRIVALSTS 1510 (2114)
Q Consensus 1493 ~i~~~~~~~~riV~lSAT 1510 (2114)
.+.++.+.+.++|++.-+
T Consensus 138 ~ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 138 MILTRIGEGSKIIITGDP 155 (205)
T ss_dssp HHHTTB-TT-EEEEEE--
T ss_pred HHHcccCCCcEEEEecCc
Confidence 667777888888887543
No 337
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.62 E-value=0.0004 Score=82.33 Aligned_cols=128 Identities=19% Similarity=0.161 Sum_probs=87.3
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.|++.|--+.-.+.. + -|+...||=|||+++.+|..-.... +. .+=+++...-||..=++.+...|. .+|+
T Consensus 77 ~p~~vQll~~l~L~~-G--~laEm~TGEGKTli~~l~a~~~AL~---G~--~V~vvT~NdyLA~RD~~~~~~~y~-~LGl 147 (266)
T PF07517_consen 77 RPYDVQLLGALALHK-G--RLAEMKTGEGKTLIAALPAALNALQ---GK--GVHVVTSNDYLAKRDAEEMRPFYE-FLGL 147 (266)
T ss_dssp ---HHHHHHHHHHHT-T--SEEEESTTSHHHHHHHHHHHHHHTT---SS---EEEEESSHHHHHHHHHHHHHHHH-HTT-
T ss_pred cccHHHHhhhhhccc-c--eeEEecCCCCcHHHHHHHHHHHHHh---cC--CcEEEeccHHHhhccHHHHHHHHH-Hhhh
Confidence 566777666655533 2 3999999999999988777655444 33 677889999999998888886554 5699
Q ss_pred EEEEEcCCcccch-hhccCCcEEEEChhhHHH-HHh-hhcccc---cccceeEEEeccccccc
Q 000129 1421 RVVELTGETAMDL-KLLEKGQIIISTPEKWDA-LSR-RWKQRK---YVQQVSLFIIDELHLIG 1477 (2114)
Q Consensus 1421 ~v~~l~G~~~~~~-~~l~~~~IIV~TPe~l~~-l~r-~~~~~~---~l~~v~liIiDEaH~l~ 1477 (2114)
+|+..+++.+.+. +..-.++|+++|...+.. .+| ++.... ......++||||||.+.
T Consensus 148 sv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 148 SVGIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp -EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred ccccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 9999999876542 334456899999998742 333 222221 24678999999999553
No 338
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.61 E-value=0.00018 Score=84.87 Aligned_cols=75 Identities=32% Similarity=0.380 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (2114)
+||+-|.+|+..++....-.+|.||.|+|||.+..-.+...+.... ......+.++++++|+.+-+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~---~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFK---SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH----------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchh---hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 4799999999988876544899999999999665443333311000 00011345899999999999999999988
No 339
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.60 E-value=0.016 Score=79.12 Aligned_cols=52 Identities=19% Similarity=0.367 Sum_probs=45.5
Q ss_pred cccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhc
Q 000129 1935 LLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNR 1991 (2114)
Q Consensus 1935 L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~ 1991 (2114)
|..|||||...++++-.+ +.|+.+|++++.++...+++ +++..+.|.+|++.
T Consensus 759 L~~lPgI~~~~a~~ll~~----f~si~~l~~as~eeL~~~iG-~~~~A~~i~~fl~~ 810 (814)
T TIGR00596 759 LLKLPGVTKKNYRNLRKK----VKSIRELAKLSQNELNELIG-DEEAAKRLYDFLRT 810 (814)
T ss_pred HHHCCCCCHHHHHHHHHH----cCCHHHHHhCCHHHHHHHhC-CHHHHHHHHHHhcc
Confidence 778999999999997764 67999999999999888865 58889999999885
No 340
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.55 E-value=0.00027 Score=88.32 Aligned_cols=81 Identities=22% Similarity=0.304 Sum_probs=66.6
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
+|..+||.-|+.|+..++...= -||++|.|+|||.+..-.+.+.+..+ ...+++++|..--+.|+++.+
T Consensus 406 ~~lpkLN~SQ~~AV~~VL~rpl-sLIQGPPGTGKTvtsa~IVyhl~~~~----------~~~VLvcApSNiAVDqLaeKI 474 (935)
T KOG1802|consen 406 PNLPKLNASQSNAVKHVLQRPL-SLIQGPPGTGKTVTSATIVYHLARQH----------AGPVLVCAPSNIAVDQLAEKI 474 (935)
T ss_pred CCchhhchHHHHHHHHHHcCCc-eeeecCCCCCceehhHHHHHHHHHhc----------CCceEEEcccchhHHHHHHHH
Confidence 5788999999999999987644 89999999999998877666666654 237999999999999999888
Q ss_pred HHhhccCCcEEEEEeC
Q 000129 571 SNRLQMYDVKVRELSG 586 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~G 586 (2114)
.+- |++|..+..
T Consensus 475 h~t----gLKVvRl~a 486 (935)
T KOG1802|consen 475 HKT----GLKVVRLCA 486 (935)
T ss_pred Hhc----CceEeeeeh
Confidence 763 677766654
No 341
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.50 E-value=6.8e-05 Score=85.25 Aligned_cols=60 Identities=23% Similarity=0.308 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHH
Q 000129 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (2114)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raL 562 (2114)
++-.|+-|..++..++ ..+.+++.||.|+|||++++.+.++.+..+.- -+++|+-|..+.
T Consensus 2 I~p~~~~Q~~~~~al~-~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~---------~kiii~Rp~v~~ 61 (205)
T PF02562_consen 2 IKPKNEEQKFALDALL-NNDLVIVNGPAGTGKTFLALAAALELVKEGEY---------DKIIITRPPVEA 61 (205)
T ss_dssp ----SHHHHHHHHHHH-H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS----------SEEEEEE-S--T
T ss_pred ccCCCHHHHHHHHHHH-hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCC---------cEEEEEecCCCC
Confidence 4457899999999888 56679999999999999999999998876432 289999888753
No 342
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=0.002 Score=79.28 Aligned_cols=151 Identities=15% Similarity=0.214 Sum_probs=93.9
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEecCCCch--HHHHHHHHHHHhhhcc------------C--------------CCc
Q 000129 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGK--TICSEFAILRNHQKAS------------E--------------TGV 1390 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGK--Tl~~~l~il~~l~~~~------------~--------------~~~ 1390 (2114)
-..+++.|.+.|..+.+-.+-+.....-+.|+ +-+|++-+++|+.+.+ . -..
T Consensus 214 s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tR 293 (698)
T KOG2340|consen 214 SEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTR 293 (698)
T ss_pred cCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCC
Confidence 34789999999999887666222222223455 5678888888875431 0 013
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHhcCC-CCcE-E-------EEEcC---------------------Ccccc--------
Q 000129 1391 MRAVYIAPLEALAKERYRDWEIKFGQG-LGMR-V-------VELTG---------------------ETAMD-------- 1432 (2114)
Q Consensus 1391 ~k~l~I~Ptr~La~q~~~~~~~~f~~~-~g~~-v-------~~l~G---------------------~~~~~-------- 1432 (2114)
|++|+++|+|+-|..+.+.+...+... -|.. | +...| .+...
T Consensus 294 pkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ft 373 (698)
T KOG2340|consen 294 PKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFT 373 (698)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHH
Confidence 799999999999999999888664321 1111 1 11122 11100
Q ss_pred ------hhhccCCcEEEEChhhHHHHHhhh----cccccccceeEEEecccccccCCCCchHHHHHHHHH
Q 000129 1433 ------LKLLEKGQIIISTPEKWDALSRRW----KQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMR 1492 (2114)
Q Consensus 1433 ------~~~l~~~~IIV~TPe~l~~l~r~~----~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~ 1492 (2114)
...+.++||+||+|=-+-.++..- .....++++.++|||-+|.+.-.. ||.++.-+.
T Consensus 374 kKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QN---wEhl~~ifd 440 (698)
T KOG2340|consen 374 KKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQN---WEHLLHIFD 440 (698)
T ss_pred HHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhh---HHHHHHHHH
Confidence 012236799999998877666521 123378999999999999776433 444444333
No 343
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.48 E-value=0.00031 Score=87.88 Aligned_cols=79 Identities=20% Similarity=0.329 Sum_probs=63.0
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
++..+|.-|..|+.++++. .-.||.||+|+|||+...--+++.... ..+ .+|+++|+...++|++..+.+
T Consensus 407 ~lpkLN~SQ~~AV~~VL~r-plsLIQGPPGTGKTvtsa~IVyhl~~~--~~~--~VLvcApSNiAVDqLaeKIh~----- 476 (935)
T KOG1802|consen 407 NLPKLNASQSNAVKHVLQR-PLSLIQGPPGTGKTVTSATIVYHLARQ--HAG--PVLVCAPSNIAVDQLAEKIHK----- 476 (935)
T ss_pred CchhhchHHHHHHHHHHcC-CceeeecCCCCCceehhHHHHHHHHHh--cCC--ceEEEcccchhHHHHHHHHHh-----
Confidence 5789999999999999984 448999999999998876555554444 344 899999999999999987763
Q ss_pred CCcEEEEEc
Q 000129 1418 LGMRVVELT 1426 (2114)
Q Consensus 1418 ~g~~v~~l~ 1426 (2114)
.|++|+.+.
T Consensus 477 tgLKVvRl~ 485 (935)
T KOG1802|consen 477 TGLKVVRLC 485 (935)
T ss_pred cCceEeeee
Confidence 367776654
No 344
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.40 E-value=0.00084 Score=77.08 Aligned_cols=64 Identities=25% Similarity=0.398 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHHHHcCCCc-EEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000129 495 QLNRVQSRVYKSALSSADN-ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~n-vlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~ 569 (2114)
+||+-|.+++..++.++++ .+|+||.|+|||.+. -.+...+... +.++++++||...+.+..+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~~----------g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEAA----------GKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHHT----------T--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHhC----------CCeEEEECCcHHHHHHHHHh
Confidence 4799999999999877654 667899999999864 3344444432 34899999999988876655
No 345
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.36 E-value=0.0011 Score=80.41 Aligned_cols=167 Identities=17% Similarity=0.249 Sum_probs=107.5
Q ss_pred CCCHHHHHHHHHHHcCCC----cEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000129 1341 HFNPIQTQVFTVLYNTDD----NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~----nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~ 1416 (2114)
.+-|+|.+-+.-+....+ --++.-.-|.|||+.+.-.++... .+. ..++++|+.+| .|+.+++. ++..
T Consensus 184 ~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~----~ra--~tLVvaP~VAl-mQW~nEI~-~~T~ 255 (791)
T KOG1002|consen 184 PLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEV----DRA--PTLVVAPTVAL-MQWKNEIE-RHTS 255 (791)
T ss_pred cchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhcc----ccC--CeeEEccHHHH-HHHHHHHH-Hhcc
Confidence 567888887765543222 246778999999998755555422 222 68999999998 56677776 4544
Q ss_pred CCCcEEEEEcCCcc-cchhhccCCcEEEEChhhHHHHHhhhcc-----------cccccce--eEEEecccccccCCCCc
Q 000129 1417 GLGMRVVELTGETA-MDLKLLEKGQIIISTPEKWDALSRRWKQ-----------RKYVQQV--SLFIIDELHLIGGQGGP 1482 (2114)
Q Consensus 1417 ~~g~~v~~l~G~~~-~~~~~l~~~~IIV~TPe~l~~l~r~~~~-----------~~~l~~v--~liIiDEaH~l~~~~g~ 1482 (2114)
...+|...+|... .+.+.+.+.|++++|...+.+..|+-.. ...+.++ --||+||||.+.+....
T Consensus 256 -gslkv~~YhG~~R~~nikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~sn 334 (791)
T KOG1002|consen 256 -GSLKVYIYHGAKRDKNIKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQSN 334 (791)
T ss_pred -CceEEEEEecccccCCHHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhccccccccc
Confidence 3578888888643 4577888999999999999888876211 1134444 46899999999765433
Q ss_pred hHHHHHHHHHHHHhhcCCCceEEEEcccCCChh-----HHHHHhcCCC
Q 000129 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLANAK-----DLGEWIGATS 1525 (2114)
Q Consensus 1483 ~le~i~srl~~i~~~~~~~~riV~lSATl~n~~-----dla~wl~~~~ 1525 (2114)
+-..+.. ++ ..+-.+||.|+-..+ .+..||...+
T Consensus 335 TArAV~~-L~--------tt~rw~LSGTPLQNrigElySLiRFL~i~P 373 (791)
T KOG1002|consen 335 TARAVFA-LE--------TTYRWCLSGTPLQNRIGELYSLIRFLNINP 373 (791)
T ss_pred HHHHHHh-hH--------hhhhhhccCCcchhhHHHHHHHHHHHccCc
Confidence 3333221 11 234478888864321 3445555443
No 346
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.32 E-value=0.0011 Score=76.16 Aligned_cols=64 Identities=23% Similarity=0.314 Sum_probs=46.8
Q ss_pred CCCHHHHHHHHHHHcCCC-cEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHH
Q 000129 1341 HFNPIQTQVFTVLYNTDD-NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~-nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~ 1409 (2114)
+||+-|.+++..++.+++ -++|.||.|+|||.+. -.+.+.+.. .+. ++++++||...+....+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~--~g~--~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEA--AGK--RVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHH--TT----EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHh--CCC--eEEEECCcHHHHHHHHHh
Confidence 478999999999987665 4667799999999764 445555655 233 899999999988875553
No 347
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.29 E-value=0.0013 Score=88.36 Aligned_cols=68 Identities=31% Similarity=0.383 Sum_probs=56.6
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000129 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (2114)
..||+.|.+|+..++...+.++|.||+|+|||.+..-.+.+.+..+ .++++++|+..-|.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g-----------~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRG-----------LRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcC-----------CCEEEEcCcHHHHHHHHHHHHh
Confidence 4689999999999988778899999999999987765555544332 3799999999999999988876
No 348
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.22 E-value=0.003 Score=83.22 Aligned_cols=85 Identities=14% Similarity=0.071 Sum_probs=67.0
Q ss_pred ceEeecCCCCHHHHHHHHHHHhcCC---ceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccC
Q 000129 1635 GVGYLHEGLNKTDQEVVSALFEAGK---IKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHAS 1711 (2114)
Q Consensus 1635 gV~~~H~~ls~~dR~~v~~~F~~g~---i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAG 1711 (2114)
.-..+.|....++|-..++.|..-. ...|.+|.....|+|+.....|| .++.+..+...+|+.-||-
T Consensus 752 kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtvi----------ifdsdwnp~~d~qaqdrah 821 (1157)
T KOG0386|consen 752 KYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVI----------IFDSDWNPHQDLQAQDRAH 821 (1157)
T ss_pred heeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEE----------EecCCCCchhHHHHHHHHH
Confidence 4566778889999999999998653 46789999999999998544444 3667778888899999999
Q ss_pred CCCCCCceEEEEEeecCc
Q 000129 1712 RPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1712 R~~~~~~G~~iil~~~~~ 1729 (2114)
|-|....-.++.++.-..
T Consensus 822 rigq~~evRv~rl~tv~s 839 (1157)
T KOG0386|consen 822 RIGQKKEVRVLRLITVNS 839 (1157)
T ss_pred HhhchhheeeeeeehhhH
Confidence 987777777777776543
No 349
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.21 E-value=0.0014 Score=87.90 Aligned_cols=68 Identities=19% Similarity=0.232 Sum_probs=55.6
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHH
Q 000129 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEI 1412 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~ 1412 (2114)
..+|+.|.+|+..++.+.++++|.||+|+|||.+..-.+.+.+.. +. ++++++||...+.++..++..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~---g~--~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR---GL--RVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHc---CC--CEEEEcCcHHHHHHHHHHHHh
Confidence 478999999999998877889999999999998764444443332 33 899999999999999988774
No 350
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.18 E-value=0.0023 Score=73.53 Aligned_cols=132 Identities=20% Similarity=0.255 Sum_probs=93.2
Q ss_pred CCCHHHHHHHHHHHc--CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000129 1341 HFNPIQTQVFTVLYN--TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~--~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~ 1418 (2114)
.++|.|.++...+.+ ++.|.+...-.|.|||.+. +|++..+..+ +. --+.+++| ++|..|.++.++++|+...
T Consensus 23 liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI-~Pmla~~LAd--g~-~LvrviVp-k~Ll~q~~~~L~~~lg~l~ 97 (229)
T PF12340_consen 23 LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVI-VPMLALALAD--GS-RLVRVIVP-KALLEQMRQMLRSRLGGLL 97 (229)
T ss_pred eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchH-HHHHHHHHcC--CC-cEEEEEcC-HHHHHHHHHHHHHHHHHHh
Confidence 689999999999886 3578999999999999886 7777766652 32 14445666 6799999999999999888
Q ss_pred CcEEEEEcCCccc--ch-----------hhccCCcEEEEChhhHHHHHhhhcc----------------cccccceeEEE
Q 000129 1419 GMRVVELTGETAM--DL-----------KLLEKGQIIISTPEKWDALSRRWKQ----------------RKYVQQVSLFI 1469 (2114)
Q Consensus 1419 g~~v~~l~G~~~~--~~-----------~~l~~~~IIV~TPe~l~~l~r~~~~----------------~~~l~~v~liI 1469 (2114)
+.+|..+.-+... +. .....+.|+++|||.+.++.-.+.. ..++.....=|
T Consensus 98 ~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~~rdi 177 (229)
T PF12340_consen 98 NRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEHSRDI 177 (229)
T ss_pred CCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCeE
Confidence 8888776543222 11 1234568999999988664321110 11344555678
Q ss_pred eccccccc
Q 000129 1470 IDELHLIG 1477 (2114)
Q Consensus 1470 iDEaH~l~ 1477 (2114)
+||+|.+.
T Consensus 178 lDEsDe~L 185 (229)
T PF12340_consen 178 LDESDEIL 185 (229)
T ss_pred eECchhcc
Confidence 99998654
No 351
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.12 E-value=0.0051 Score=81.15 Aligned_cols=126 Identities=21% Similarity=0.297 Sum_probs=79.9
Q ss_pred CCCHHHHHHHHH---HHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 495 QLNRVQSRVYKS---ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 495 ~l~~iQ~~~i~~---~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
++.++|..-+.. +++++=|-|+.-.+|-|||..-.- .+..+..++...| --++|+|+--|.+ +..+|.
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIs-LitYLmE~K~~~G-------P~LvivPlstL~N-W~~Ef~ 464 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTIS-LITYLMEHKQMQG-------PFLIIVPLSTLVN-WSSEFP 464 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHH-HHHHHHHHcccCC-------CeEEeccccccCC-chhhcc
Confidence 788899887764 456777889999999999987543 3344444433222 2477899988764 334444
Q ss_pred HhhccCCcEEEEEeCCCccC----hhh-hccceEEEcCHhHHHHHHhccCCCcccccc--cEEEEeccccccc
Q 000129 572 NRLQMYDVKVRELSGDQTLT----RQQ-IEETQIIVTTPEKWDIITRKSGDRTYTQLV--KLLIIDEIHLLHD 637 (2114)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~----~~~-~~~~~IiV~TPek~d~l~r~~~~~~~l~~v--~liIiDEaH~l~d 637 (2114)
.+.. .+....+.|..... .+. ....+|++||.|.. .+ +...++.+ .++||||-|.|..
T Consensus 465 kWaP--Sv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyi---ik---dk~lLsKI~W~yMIIDEGHRmKN 529 (1157)
T KOG0386|consen 465 KWAP--SVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYI---IK---DKALLSKISWKYMIIDEGHRMKN 529 (1157)
T ss_pred cccc--ceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHh---cC---CHHHHhccCCcceeecccccccc
Confidence 4322 45556666643221 111 35789999999963 22 33344444 5799999999854
No 352
>PRK10536 hypothetical protein; Provisional
Probab=97.09 E-value=0.00076 Score=78.74 Aligned_cols=60 Identities=20% Similarity=0.226 Sum_probs=44.6
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHH
Q 000129 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (2114)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ra 561 (2114)
++.-.|..|...+..+. ..+.+++.||+|+|||+.+....++.+..+. --++++.-|...
T Consensus 56 ~i~p~n~~Q~~~l~al~-~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~---------~~kIiI~RP~v~ 115 (262)
T PRK10536 56 PILARNEAQAHYLKAIE-SKQLIFATGEAGCGKTWISAAKAAEALIHKD---------VDRIIVTRPVLQ 115 (262)
T ss_pred cccCCCHHHHHHHHHHh-cCCeEEEECCCCCCHHHHHHHHHHHHHhcCC---------eeEEEEeCCCCC
Confidence 56677899999888654 4678999999999999999888877664321 125666666654
No 353
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=97.09 E-value=0.022 Score=81.23 Aligned_cols=86 Identities=15% Similarity=-0.005 Sum_probs=74.5
Q ss_pred cceEeecCCCCHHHHHHHHHHHhcC--CceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccC
Q 000129 1634 HGVGYLHEGLNKTDQEVVSALFEAG--KIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHAS 1711 (2114)
Q Consensus 1634 ~gV~~~H~~ls~~dR~~v~~~F~~g--~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAG 1711 (2114)
.....++|+++..+|...++.|.++ ..-.+++|.....|+|+-+..+|| +++.+.+++...|.+.||-
T Consensus 736 ~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi----------~~d~~wnp~~~~Qa~dRa~ 805 (866)
T COG0553 736 IKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVI----------LFDPWWNPAVELQAIDRAH 805 (866)
T ss_pred CcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEE----------EeccccChHHHHHHHHHHH
Confidence 4688999999999999999999986 556777788999999999888888 6888889999999999999
Q ss_pred CCCCCCceEEEEEeecCc
Q 000129 1712 RPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1712 R~~~~~~G~~iil~~~~~ 1729 (2114)
|.|....-.++.++....
T Consensus 806 RigQ~~~v~v~r~i~~~t 823 (866)
T COG0553 806 RIGQKRPVKVYRLITRGT 823 (866)
T ss_pred HhcCcceeEEEEeecCCc
Confidence 987777888888877765
No 354
>PF13245 AAA_19: Part of AAA domain
Probab=97.08 E-value=0.0016 Score=62.22 Aligned_cols=61 Identities=25% Similarity=0.393 Sum_probs=43.7
Q ss_pred HHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 503 VYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 503 ~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
++..++.++.-++|.||.|||||....-.+...+..... .+.++++++|++..+.++.+++
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~-------~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARAD-------PGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC-------CCCeEEEECCCHHHHHHHHHHH
Confidence 455555644546669999999998776666666543111 1337999999999999988887
No 355
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=97.07 E-value=0.0035 Score=82.72 Aligned_cols=137 Identities=15% Similarity=0.228 Sum_probs=93.6
Q ss_pred CCCHHHHHHHH---HHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc-CCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000129 1341 HFNPIQTQVFT---VLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2114)
Q Consensus 1341 ~~~~iQ~q~~~---~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~-~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~ 1416 (2114)
.++.+|..-++ .+|+.+=|-|+.-.-|-|||+.. +.+|.|+.... +-| --||||||--+.+ +.-+|+ +|..
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQt-ISllAhLACeegnWG--PHLIVVpTsviLn-WEMElK-RwcP 689 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQT-ISLLAHLACEEGNWG--PHLIVVPTSVILN-WEMELK-RWCP 689 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHH-HHHHHHHHhcccCCC--CceEEeechhhhh-hhHHHh-hhCC
Confidence 67888887766 46888889999999999999876 55666665432 233 5689999976644 333454 5554
Q ss_pred CCCcEEEEEcCCcccc---hhhccCC---cEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHH
Q 000129 1417 GLGMRVVELTGETAMD---LKLLEKG---QIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 1488 (2114)
Q Consensus 1417 ~~g~~v~~l~G~~~~~---~~~l~~~---~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~ 1488 (2114)
|++|..++|..... .+.+.+. ||.|++...+..-++.++. .+..++|+||+|.+.+.....|+.++
T Consensus 690 --glKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AFkr----krWqyLvLDEaqnIKnfksqrWQAll 761 (1958)
T KOG0391|consen 690 --GLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAFKR----KRWQYLVLDEAQNIKNFKSQRWQALL 761 (1958)
T ss_pred --cceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHHHh----hccceeehhhhhhhcchhHHHHHHHh
Confidence 88999999965432 2223322 8999888776443333222 35689999999999877655666555
No 356
>PF13245 AAA_19: Part of AAA domain
Probab=97.03 E-value=0.0021 Score=61.56 Aligned_cols=60 Identities=22% Similarity=0.197 Sum_probs=42.1
Q ss_pred HHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhc-cCCCceEEEEEcccHHHHHHHHHHH
Q 000129 1349 VFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA-SETGVMRAVYIAPLEALAKERYRDW 1410 (2114)
Q Consensus 1349 ~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~-~~~~~~k~l~I~Ptr~La~q~~~~~ 1410 (2114)
++...+.++..++|.||.|||||....-.+...+... ..+. ++++++|++..++++.+++
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~--~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGK--RVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCC--eEEEECCCHHHHHHHHHHH
Confidence 4454444455466699999999977756555555321 1233 8999999999999988766
No 357
>PRK10536 hypothetical protein; Provisional
Probab=97.02 E-value=0.0077 Score=70.54 Aligned_cols=143 Identities=15% Similarity=0.211 Sum_probs=82.6
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHH----------HHH
Q 000129 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK----------ERY 1407 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~----------q~~ 1407 (2114)
++.-.|..|...+..+.+ .+.+++.||+|||||+++....++.+.. ..-. ++++.-|..+... +.+
T Consensus 56 ~i~p~n~~Q~~~l~al~~-~~lV~i~G~aGTGKT~La~a~a~~~l~~-~~~~--kIiI~RP~v~~ge~LGfLPG~~~eK~ 131 (262)
T PRK10536 56 PILARNEAQAHYLKAIES-KQLIFATGEAGCGKTWISAAKAAEALIH-KDVD--RIIVTRPVLQADEDLGFLPGDIAEKF 131 (262)
T ss_pred cccCCCHHHHHHHHHHhc-CCeEEEECCCCCCHHHHHHHHHHHHHhc-CCee--EEEEeCCCCCchhhhCcCCCCHHHHH
Confidence 356788999999998766 5689999999999999997777766644 2222 6677767654321 222
Q ss_pred HHHHHHhcCCCCcEEEEEcCCcccchhh--ccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHH
Q 000129 1408 RDWEIKFGQGLGMRVVELTGETAMDLKL--LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLE 1485 (2114)
Q Consensus 1408 ~~~~~~f~~~~g~~v~~l~G~~~~~~~~--l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le 1485 (2114)
.-|-.-+-..+. .+.|....+ .. .+.+.|-|.... .+|. + .+. -++||+|||+.+.
T Consensus 132 ~p~~~pi~D~L~----~~~~~~~~~-~~~~~~~~~Iei~~l~----ymRG---r-tl~-~~~vIvDEaqn~~-------- 189 (262)
T PRK10536 132 APYFRPVYDVLV----RRLGASFMQ-YCLRPEIGKVEIAPFA----YMRG---R-TFE-NAVVILDEAQNVT-------- 189 (262)
T ss_pred HHHHHHHHHHHH----HHhChHHHH-HHHHhccCcEEEecHH----HhcC---C-ccc-CCEEEEechhcCC--------
Confidence 222211111100 011111111 11 134556666533 3332 2 233 3899999999884
Q ss_pred HHHHHHHHHHhhcCCCceEEEEc
Q 000129 1486 VIVSRMRYIASQVENKIRIVALS 1508 (2114)
Q Consensus 1486 ~i~srl~~i~~~~~~~~riV~lS 1508 (2114)
...++.+.+..+.+.++|++.
T Consensus 190 --~~~~k~~ltR~g~~sk~v~~G 210 (262)
T PRK10536 190 --AAQMKMFLTRLGENVTVIVNG 210 (262)
T ss_pred --HHHHHHHHhhcCCCCEEEEeC
Confidence 244555555567788877754
No 358
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.91 E-value=0.0053 Score=65.48 Aligned_cols=121 Identities=19% Similarity=0.275 Sum_probs=57.8
Q ss_pred CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEE-EcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchh
Q 000129 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVY-IAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK 1434 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~-I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~ 1434 (2114)
++..++|.||+|+|||.+....+-...........+.+++ -+|...-....+..+...++.....
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-------------- 68 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-------------- 68 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--------------
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--------------
Confidence 3556899999999999887555443322110001224443 3444433455555555555432111
Q ss_pred hccCCcEEEEChhhHHHHH-hhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEccc
Q 000129 1435 LLEKGQIIISTPEKWDALS-RRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTS 1510 (2114)
Q Consensus 1435 ~l~~~~IIV~TPe~l~~l~-r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSAT 1510 (2114)
-.|+..+...+ +.+.. ....+|||||+|.+. . ..++..++.+.. ..++++|+.+.+
T Consensus 69 --------~~~~~~l~~~~~~~l~~----~~~~~lviDe~~~l~--~----~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 69 --------RQTSDELRSLLIDALDR----RRVVLLVIDEADHLF--S----DEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp --------TS-HHHHHHHHHHHHHH----CTEEEEEEETTHHHH--T----HHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred --------cCCHHHHHHHHHHHHHh----cCCeEEEEeChHhcC--C----HHHHHHHHHHHh--CCCCeEEEEECh
Confidence 11222222222 22111 123799999999984 1 335555555543 456666555443
No 359
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.73 E-value=0.015 Score=77.33 Aligned_cols=153 Identities=14% Similarity=0.181 Sum_probs=83.7
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccC-CCceEEEEEcccHHHHHHHHHH
Q 000129 1331 LYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE-TGVMRAVYIAPLEALAKERYRD 1409 (2114)
Q Consensus 1331 ~~~~l~~gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~-~~~~k~l~I~Ptr~La~q~~~~ 1409 (2114)
.+..+|.... -.+.|+.|+..++. +..++|.|+.|+|||.+.. .++..+....+ .+..++++.+||---|..+.+.
T Consensus 136 ~l~~~~~~~~-~~~~Qk~A~~~al~-~~~~vitGgpGTGKTt~v~-~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~ 212 (586)
T TIGR01447 136 ILENLFPLLN-EQNWQKVAVALALK-SNFSLITGGPGTGKTTTVA-RLLLALVKQSPKQGKLRIALAAPTGKAAARLAES 212 (586)
T ss_pred HHHHhhcccc-ccHHHHHHHHHHhh-CCeEEEEcCCCCCHHHHHH-HHHHHHHHhccccCCCcEEEECCcHHHHHHHHHH
Confidence 3445554222 23799999999987 4569999999999998752 23333332111 1124899999998888877766
Q ss_pred HHHHhcCCCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhh---hc-ccccccceeEEEecccccccCCCCchHH
Q 000129 1410 WEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRR---WK-QRKYVQQVSLFIIDELHLIGGQGGPVLE 1485 (2114)
Q Consensus 1410 ~~~~f~~~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~---~~-~~~~l~~v~liIiDEaH~l~~~~g~~le 1485 (2114)
....+... +.. . + ....-.+-..|-.++...... +. .....-.+++|||||+-++..
T Consensus 213 ~~~~~~~l-~~~-----~----~--~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~------- 273 (586)
T TIGR01447 213 LRKAVKNL-AAA-----E----A--LIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDL------- 273 (586)
T ss_pred HHhhhccc-ccc-----h----h--hhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCH-------
Confidence 65433221 100 0 0 000001112333332221110 00 011233589999999998851
Q ss_pred HHHHHHHHHHhhcCCCceEEEEc
Q 000129 1486 VIVSRMRYIASQVENKIRIVALS 1508 (2114)
Q Consensus 1486 ~i~srl~~i~~~~~~~~riV~lS 1508 (2114)
..|..+...++...|+|++.
T Consensus 274 ---~l~~~ll~al~~~~rlIlvG 293 (586)
T TIGR01447 274 ---PLMAKLLKALPPNTKLILLG 293 (586)
T ss_pred ---HHHHHHHHhcCCCCEEEEEC
Confidence 12233333446788988876
No 360
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.73 E-value=0.013 Score=78.06 Aligned_cols=153 Identities=15% Similarity=0.129 Sum_probs=84.6
Q ss_pred HHHHHhcCCC-CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHH
Q 000129 1331 LYEALYQGFK-HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409 (2114)
Q Consensus 1331 ~~~~l~~gf~-~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~ 1409 (2114)
.+..+|. .. ...+.|+.|+...+. +.-++|.|++|+|||.+.. .++..+.........++++.+||.--|..+.+.
T Consensus 142 ~l~~lf~-~~~~~~d~Qk~Av~~a~~-~~~~vItGgpGTGKTt~v~-~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~ 218 (615)
T PRK10875 142 TLDALFG-PVTDEVDWQKVAAAVALT-RRISVISGGPGTGKTTTVA-KLLAALIQLADGERCRIRLAAPTGKAAARLTES 218 (615)
T ss_pred HHHHhcC-cCCCCCHHHHHHHHHHhc-CCeEEEEeCCCCCHHHHHH-HHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHH
Confidence 3444553 22 235899999998887 4559999999999998752 333333321112224788999999888887776
Q ss_pred HHHHhcCCCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhh---h-cccccccceeEEEecccccccCCCCchHH
Q 000129 1410 WEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRR---W-KQRKYVQQVSLFIIDELHLIGGQGGPVLE 1485 (2114)
Q Consensus 1410 ~~~~f~~~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~---~-~~~~~l~~v~liIiDEaH~l~~~~g~~le 1485 (2114)
........ +. .. ..+ ..-..-..|-.++...... . ....+.-..+++||||+-++.
T Consensus 219 ~~~~~~~~-~~-----~~----~~~--~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd-------- 278 (615)
T PRK10875 219 LGKALRQL-PL-----TD----EQK--KRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD-------- 278 (615)
T ss_pred HHhhhhcc-cc-----ch----hhh--hcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc--------
Confidence 65433321 11 00 000 0000112332332211100 0 011123356899999999884
Q ss_pred HHHHHHHHHHhhcCCCceEEEEc
Q 000129 1486 VIVSRMRYIASQVENKIRIVALS 1508 (2114)
Q Consensus 1486 ~i~srl~~i~~~~~~~~riV~lS 1508 (2114)
+..|..+...++...|+|++.
T Consensus 279 --~~lm~~ll~al~~~~rlIlvG 299 (615)
T PRK10875 279 --LPMMARLIDALPPHARVIFLG 299 (615)
T ss_pred --HHHHHHHHHhcccCCEEEEec
Confidence 222333444457788999886
No 361
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=96.69 E-value=0.012 Score=70.02 Aligned_cols=160 Identities=18% Similarity=0.123 Sum_probs=99.0
Q ss_pred CCCHHHHHHHHHHHcC---------CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHH
Q 000129 495 QLNRVQSRVYKSALSS---------ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE 565 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~---------~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q 565 (2114)
.|+..|-+++--+.+. +.-.++-=.||.||.-...-.|+....+++ .|+|++...-.|-.+
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr----------~r~vwvS~s~dL~~D 106 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGR----------KRAVWVSVSNDLKYD 106 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCC----------CceEEEECChhhhhH
Confidence 5788999988655321 234778889999999888777888877653 269999999999999
Q ss_pred HHHHHHHhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhc-cCCCcccc---------cccEEEEeccccc
Q 000129 566 VVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRK-SGDRTYTQ---------LVKLLIIDEIHLL 635 (2114)
Q Consensus 566 ~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~-~~~~~~l~---------~v~liIiDEaH~l 635 (2114)
..+.|+..... .+.+..+..- .......-...|+++|.-.+-.-.+. ......++ .=.+||+||||..
T Consensus 107 a~RDl~DIG~~-~i~v~~l~~~-~~~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~a 184 (303)
T PF13872_consen 107 AERDLRDIGAD-NIPVHPLNKF-KYGDIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKA 184 (303)
T ss_pred HHHHHHHhCCC-cccceechhh-ccCcCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhc
Confidence 99999876433 3444433321 11111112346899998765322211 01111111 1258999999998
Q ss_pred ccC-Cc----hhHHHHHHHHHHHHhhccccccEEEEcccc
Q 000129 636 HDN-RG----PVLESIVARTVRQIETTKEHIRLVGLSATL 670 (2114)
Q Consensus 636 ~d~-rg----~~le~iv~rl~~~~~~~~~~~riv~lSATl 670 (2114)
... .+ ......+..+ +..-++.|+|-+|||-
T Consensus 185 kn~~~~~~~~sk~g~avl~L----Q~~LP~ARvvY~SATg 220 (303)
T PF13872_consen 185 KNLSSGSKKPSKTGIAVLEL----QNRLPNARVVYASATG 220 (303)
T ss_pred CCCCccCccccHHHHHHHHH----HHhCCCCcEEEecccc
Confidence 652 21 2222222222 3334788999999994
No 362
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=96.64 E-value=0.076 Score=71.13 Aligned_cols=126 Identities=16% Similarity=0.131 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEE
Q 000129 1344 PIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVV 1423 (2114)
Q Consensus 1344 ~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~ 1423 (2114)
|+=.|.+-.+.- +..-+.-.-||=|||+++.+|+.-.... +. .+.++...-=||.--..... .+-..+|++|+
T Consensus 81 ~~dVQliG~i~l-h~g~iaEM~TGEGKTL~atlp~ylnaL~---gk--gVhvVTvNdYLA~RDae~m~-~l~~~LGlsvG 153 (822)
T COG0653 81 HFDVQLLGGIVL-HLGDIAEMRTGEGKTLVATLPAYLNALA---GK--GVHVVTVNDYLARRDAEWMG-PLYEFLGLSVG 153 (822)
T ss_pred hhhHHHhhhhhh-cCCceeeeecCCchHHHHHHHHHHHhcC---CC--CcEEeeehHHhhhhCHHHHH-HHHHHcCCcee
Confidence 333444444332 3446889999999999999988643333 32 35566666666665444444 44445799999
Q ss_pred EEcCCcccc-hhhccCCcEEEEChhhHH-HHHhh----hcccccccceeEEEecccccc
Q 000129 1424 ELTGETAMD-LKLLEKGQIIISTPEKWD-ALSRR----WKQRKYVQQVSLFIIDELHLI 1476 (2114)
Q Consensus 1424 ~l~G~~~~~-~~~l~~~~IIV~TPe~l~-~l~r~----~~~~~~l~~v~liIiDEaH~l 1476 (2114)
....+.+.. .+..-.+||.++|-..+. ..+|- ...........+.|+||++.+
T Consensus 154 ~~~~~m~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSI 212 (822)
T COG0653 154 VILAGMSPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSI 212 (822)
T ss_pred eccCCCChHHHHHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhe
Confidence 988877665 334456799999988751 11211 112234445788888888844
No 363
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.63 E-value=0.0037 Score=78.74 Aligned_cols=96 Identities=16% Similarity=0.248 Sum_probs=60.5
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhhcc
Q 000129 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLE 1437 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~l~ 1437 (2114)
..++|.|..|||||+++.- ++..+.....+. +++|+++..+|...+...+...... .
T Consensus 2 ~v~~I~G~aGTGKTvla~~-l~~~l~~~~~~~--~~~~l~~n~~l~~~l~~~l~~~~~~--------------------~ 58 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALN-LAKELQNSEEGK--KVLYLCGNHPLRNKLREQLAKKYNP--------------------K 58 (352)
T ss_pred eEEEEEecCCcCHHHHHHH-HHHHhhccccCC--ceEEEEecchHHHHHHHHHhhhccc--------------------c
Confidence 3578999999999999844 444442212334 8899999999999888777643300 0
Q ss_pred CCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC
Q 000129 1438 KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (2114)
Q Consensus 1438 ~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~ 1478 (2114)
.....+..|..+..-.. ........+++|||||||++..
T Consensus 59 ~~~~~~~~~~~~i~~~~--~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 59 LKKSDFRKPTSFINNYS--ESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hhhhhhhhhHHHHhhcc--cccccCCcCCEEEEehhHhhhh
Confidence 01122333333322111 1223467899999999999976
No 364
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=96.51 E-value=0.032 Score=66.54 Aligned_cols=161 Identities=20% Similarity=0.225 Sum_probs=98.6
Q ss_pred CCCHHHHHHHHHHHc---------CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHH
Q 000129 1341 HFNPIQTQVFTVLYN---------TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~---------~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~ 1411 (2114)
.+...|-+++--+.+ .+.-.++.-.||.||.-...-.|+..+.+. .. |+|++..+..|-....++|+
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G--r~--r~vwvS~s~dL~~Da~RDl~ 112 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG--RK--RAVWVSVSNDLKYDAERDLR 112 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC--CC--ceEEEECChhhhhHHHHHHH
Confidence 567777766654431 234588999999999877777778888772 22 79999999999999999998
Q ss_pred HHhcCCCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhh---ccc-----ccc-c-ceeEEEecccccccCCCC
Q 000129 1412 IKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRW---KQR-----KYV-Q-QVSLFIIDELHLIGGQGG 1481 (2114)
Q Consensus 1412 ~~f~~~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~---~~~-----~~l-~-~v~liIiDEaH~l~~~~g 1481 (2114)
.++.. .+.+.-+..-...+...+ ...|+++|...|..-.+.. ..+ .++ + -=++||+||+|...+..+
T Consensus 113 -DIG~~-~i~v~~l~~~~~~~~~~~-~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~ 189 (303)
T PF13872_consen 113 -DIGAD-NIPVHPLNKFKYGDIIRL-KEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSS 189 (303)
T ss_pred -HhCCC-cccceechhhccCcCCCC-CCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCc
Confidence 45532 333333322110111111 3369999988876654310 111 011 1 135999999998765322
Q ss_pred -----chHHHHHHHHHHHHhhcCCCceEEEEcccCC
Q 000129 1482 -----PVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512 (2114)
Q Consensus 1482 -----~~le~i~srl~~i~~~~~~~~riV~lSATl~ 1512 (2114)
......+..+. .++ ++.|+|-+|||-.
T Consensus 190 ~~~~~sk~g~avl~LQ---~~L-P~ARvvY~SATga 221 (303)
T PF13872_consen 190 GSKKPSKTGIAVLELQ---NRL-PNARVVYASATGA 221 (303)
T ss_pred cCccccHHHHHHHHHH---HhC-CCCcEEEeccccc
Confidence 22223333333 333 4788999999964
No 365
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.47 E-value=0.023 Score=75.57 Aligned_cols=70 Identities=23% Similarity=0.259 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 498 RVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 498 ~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
..|+.|+..++.+ .-++|+|+.|+|||.+..-. +..+...... ..+.++++.+||---|..+.+......
T Consensus 148 ~~Qk~A~~~al~~-~~~vitGgpGTGKTt~v~~l-l~~l~~~~~~-----~~~~~I~l~APTGkAA~rL~e~~~~~~ 217 (586)
T TIGR01447 148 NWQKVAVALALKS-NFSLITGGPGTGKTTTVARL-LLALVKQSPK-----QGKLRIALAAPTGKAAARLAESLRKAV 217 (586)
T ss_pred HHHHHHHHHHhhC-CeEEEEcCCCCCHHHHHHHH-HHHHHHhccc-----cCCCcEEEECCcHHHHHHHHHHHHhhh
Confidence 7999999998876 55999999999999875332 2222221100 012479999999988888777766543
No 366
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.44 E-value=0.0039 Score=69.69 Aligned_cols=127 Identities=17% Similarity=0.228 Sum_probs=75.0
Q ss_pred CCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHH
Q 000129 1573 NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVS 1652 (2114)
Q Consensus 1573 ~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~ 1652 (2114)
..+.+|||++|.+..+.+...+.... ...++.++.. ...++..++
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~---------------------------------~~~~~~v~~q--~~~~~~~~l 52 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERL---------------------------------EEKGIPVFVQ--GSKSRDELL 52 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS----------------------------------E-ETSCEEES--TCCHHHHHH
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhc---------------------------------ccccceeeec--CcchHHHHH
Confidence 35789999999998877775442110 0112334443 356788899
Q ss_pred HHHhcCCceEEEecC--ccccccCCCC---cEEEEEeeeEecCC-------------------cCcCCCCCHhHHHHhHc
Q 000129 1653 ALFEAGKIKVCVMSS--SMCWGVPLTA---HLVVVMGTQYYDGQ-------------------ENAHTDYPVTDLLQMMG 1708 (2114)
Q Consensus 1653 ~~F~~g~i~VLVaT~--~la~Gvdip~---~~vVI~gt~~yd~~-------------------~~~~~~~s~~~~lQr~G 1708 (2114)
+.|+++.-.||+|+. .+..|||+|+ ..+||.|.++-... ..++.+.-...+.|.+|
T Consensus 53 ~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~G 132 (167)
T PF13307_consen 53 EEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIG 132 (167)
T ss_dssp HHHCCSSSEEEEEETTSCCGSSS--ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHH
T ss_pred HHHHhccCeEEEEEecccEEEeecCCCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcC
Confidence 999999999999998 9999999994 45667777664332 11122333567779999
Q ss_pred ccCCCCCCCceEEEEEeecCcHHHHHH
Q 000129 1709 HASRPLLDNSGKCVILCHAPRKEYYKK 1735 (2114)
Q Consensus 1709 RAGR~~~~~~G~~iil~~~~~~~~~~~ 1735 (2114)
|+-|.. +..|.++++-..-....|.+
T Consensus 133 R~iR~~-~D~g~i~llD~R~~~~~y~~ 158 (167)
T PF13307_consen 133 RLIRSE-DDYGVIILLDSRFLSKRYGK 158 (167)
T ss_dssp CC--ST-T-EEEEEEESGGGGGHHHHH
T ss_pred cceecc-CCcEEEEEEcCccccchhhh
Confidence 999964 45565555544333333433
No 367
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.36 E-value=0.0064 Score=68.02 Aligned_cols=118 Identities=20% Similarity=0.338 Sum_probs=71.1
Q ss_pred CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHH
Q 000129 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (2114)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v 812 (2114)
++.+|||++|.+..+.+...+...... .++.++.- ...++..+
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~-----------------------------------~~~~v~~q--~~~~~~~~ 51 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEE-----------------------------------KGIPVFVQ--GSKSRDEL 51 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E------------------------------------ETSCEEES--TCCHHHHH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhccc-----------------------------------ccceeeec--CcchHHHH
Confidence 589999999999888887766543210 01112222 35578889
Q ss_pred HHHHhCCCceEEEech--HhhhhcCCCc--eEEEEecceeccCCCC----------------cc----ccCCHHHHHHhh
Q 000129 813 EDLFGDGHVQVLVSTA--TLAWGVNLPA--HTVIIKGTQIYNPEKG----------------AW----TELSPLDIMQML 868 (2114)
Q Consensus 813 ~~~F~~g~i~VLVaT~--tla~GVdlP~--v~vVI~~~~~yd~~~g----------------~~----~~~s~~~~~Qr~ 868 (2114)
.+.|+++.-.||+|+. .++.|||+|+ .+.||-...||-++.. .+ .+.....+.|.+
T Consensus 52 l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~ 131 (167)
T PF13307_consen 52 LEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAI 131 (167)
T ss_dssp HHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHH
T ss_pred HHHHHhccCeEEEEEecccEEEeecCCCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhc
Confidence 9999999999999999 9999999995 4455555666644421 01 112346778999
Q ss_pred cccCCCCCCCceEEEEEcCC
Q 000129 869 GRAGRPQYDSYGEGIIITGH 888 (2114)
Q Consensus 869 GRAGR~g~d~~G~~iil~~~ 888 (2114)
||+-|.. +..|..+++-..
T Consensus 132 GR~iR~~-~D~g~i~llD~R 150 (167)
T PF13307_consen 132 GRLIRSE-DDYGVIILLDSR 150 (167)
T ss_dssp HCC--ST-T-EEEEEEESGG
T ss_pred Ccceecc-CCcEEEEEEcCc
Confidence 9999965 345665555443
No 368
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.24 E-value=0.0073 Score=74.84 Aligned_cols=123 Identities=21% Similarity=0.203 Sum_probs=75.6
Q ss_pred CCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhc
Q 000129 496 LNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ 575 (2114)
Q Consensus 496 l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~ 575 (2114)
||+-|.+++.. ...+++|.|+.|||||.+.+.-++..+..+.. +.-+++++++|++.+.++..++...+.
T Consensus 1 l~~eQ~~~i~~---~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~-------~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 1 LTDEQRRIIRS---TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGV-------PPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp S-HHHHHHHHS----SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSS-------TGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC---CCCCEEEEeCCCCCchHHHHHHHHHhhccccC-------ChHHheecccCHHHHHHHHHHHHHhcC
Confidence 68899999986 45679999999999999988888777765521 234699999999999999999998765
Q ss_pred cCCcEEEEEeCCCccChhhhccceEEEcCHhHH-HHHHhcc-CCCcccccccEEEEeccc
Q 000129 576 MYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKS-GDRTYTQLVKLLIIDEIH 633 (2114)
Q Consensus 576 ~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~-d~l~r~~-~~~~~l~~v~liIiDEaH 633 (2114)
..+... ..+............+.|+|-..+ ..+.+.. ..... .-.+-|+|+..
T Consensus 71 ~~~~~~---~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~--~~~~~i~~~~~ 125 (315)
T PF00580_consen 71 EEQQES---SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGI--DPNFEILDEEE 125 (315)
T ss_dssp HCCHCC---TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTS--HTTTEEECHHH
T ss_pred cccccc---cccccccccccccchheeehhhhhhhhhhhhhhhhhhc--cccceeecchh
Confidence 321000 000001111112356788888776 3343332 21111 12455666665
No 369
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.22 E-value=0.01 Score=74.76 Aligned_cols=95 Identities=19% Similarity=0.259 Sum_probs=59.1
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccCh
Q 000129 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR 592 (2114)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~ 592 (2114)
.++|.|..|||||++++-.+... ... ..+.+++|+++..+|+..+...+.+....
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l-~~~--------~~~~~~~~l~~n~~l~~~l~~~l~~~~~~---------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL-QNS--------EEGKKVLYLCGNHPLRNKLREQLAKKYNP---------------- 57 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh-hcc--------ccCCceEEEEecchHHHHHHHHHhhhccc----------------
Confidence 47899999999999986544443 111 12347899999999999888888664300
Q ss_pred hhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc
Q 000129 593 QQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (2114)
Q Consensus 593 ~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d 637 (2114)
......+..|..+ +............+++|||||||+|.+
T Consensus 58 ---~~~~~~~~~~~~~--i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 58 ---KLKKSDFRKPTSF--INNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred ---chhhhhhhhhHHH--HhhcccccccCCcCCEEEEehhHhhhh
Confidence 0111223333332 111101123456789999999999976
No 370
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.21 E-value=0.018 Score=68.90 Aligned_cols=141 Identities=18% Similarity=0.239 Sum_probs=84.3
Q ss_pred CCCCCCHHHHHHHHHHHcCC-CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000129 1338 GFKHFNPIQTQVFTVLYNTD-DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~-~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~ 1416 (2114)
|+.--|..|.-|+..++..+ +-|.+.++-|||||+.|+-|.+......+.-. |+|+.=|+..+-
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~--KiiVtRp~vpvG------------- 289 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYR--KIIVTRPTVPVG------------- 289 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhc--eEEEecCCcCcc-------------
Confidence 47788899999999998744 44678899999999999888777666534444 788877775543
Q ss_pred CCCcEEEEEcCCcccchhhccCC-----cEE----EEChhhHHHHHhhh----------cccccccceeEEEeccccccc
Q 000129 1417 GLGMRVVELTGETAMDLKLLEKG-----QII----ISTPEKWDALSRRW----------KQRKYVQQVSLFIIDELHLIG 1477 (2114)
Q Consensus 1417 ~~g~~v~~l~G~~~~~~~~l~~~-----~II----V~TPe~l~~l~r~~----------~~~~~l~~v~liIiDEaH~l~ 1477 (2114)
..++.+-|.......-+.++ ..+ =++.+.+..++.+. +.+. +. =.+||||||+.|-
T Consensus 290 ---~dIGfLPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRS-l~-~~FiIIDEaQNLT 364 (436)
T COG1875 290 ---EDIGFLPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRS-LP-DSFIIIDEAQNLT 364 (436)
T ss_pred ---cccCcCCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccc-cc-cceEEEehhhccC
Confidence 33444444322221111000 001 11223333332210 1111 11 2589999999883
Q ss_pred CCCCchHHHHHHHHHHHHhhcCCCceEEEEc
Q 000129 1478 GQGGPVLEVIVSRMRYIASQVENKIRIVALS 1508 (2114)
Q Consensus 1478 ~~~g~~le~i~srl~~i~~~~~~~~riV~lS 1508 (2114)
-..++.+.++.+...+||++.
T Consensus 365 ----------pheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 365 ----------PHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred ----------HHHHHHHHHhccCCCEEEEcC
Confidence 234555666668899998875
No 371
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.19 E-value=0.051 Score=68.45 Aligned_cols=131 Identities=15% Similarity=0.165 Sum_probs=74.4
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHhhhc-cCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhh
Q 000129 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKA-SETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKL 1435 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l~il~~l~~~-~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~ 1435 (2114)
...+++.||||+|||+++.-.+....... ..+..+..+.+=+.|.-+.++.+.|.+ .+|+.+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~----~lgvpv~~----------- 238 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGD----IMGIPVKA----------- 238 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhh----cCCcceEe-----------
Confidence 34689999999999987753332222211 123322334445667777666665553 33444321
Q ss_pred ccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCC-ceEEEEcccCCCh
Q 000129 1436 LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENK-IRIVALSTSLANA 1514 (2114)
Q Consensus 1436 l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~-~riV~lSATl~n~ 1514 (2114)
+-++..+...+.+ +.+.++||||++.+...+ .. .+.+++.+......+ -.++.+|||.. .
T Consensus 239 -------~~~~~~l~~~L~~------~~~~DlVLIDTaGr~~~~----~~-~l~el~~~l~~~~~~~e~~LVlsat~~-~ 299 (388)
T PRK12723 239 -------IESFKDLKEEITQ------SKDFDLVLVDTIGKSPKD----FM-KLAEMKELLNACGRDAEFHLAVSSTTK-T 299 (388)
T ss_pred -------eCcHHHHHHHHHH------hCCCCEEEEcCCCCCccC----HH-HHHHHHHHHHhcCCCCeEEEEEcCCCC-H
Confidence 1234444443333 357899999999976421 11 355666665544433 46789999974 5
Q ss_pred hHHHHHh
Q 000129 1515 KDLGEWI 1521 (2114)
Q Consensus 1515 ~dla~wl 1521 (2114)
.++.+.+
T Consensus 300 ~~~~~~~ 306 (388)
T PRK12723 300 SDVKEIF 306 (388)
T ss_pred HHHHHHH
Confidence 5555544
No 372
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.19 E-value=0.024 Score=77.62 Aligned_cols=63 Identities=24% Similarity=0.286 Sum_probs=47.5
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHH
Q 000129 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKER 1406 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~ 1406 (2114)
..+++-|.+|+..+.. +..++|.|+.|+|||.+. -++++.+... ++..+++.++||-..|..+
T Consensus 322 ~~l~~~Q~~Ai~~~~~-~~~~iitGgpGTGKTt~l-~~i~~~~~~~--~~~~~v~l~ApTg~AA~~L 384 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQ-HKVVILTGGPGTGKTTIT-RAIIELAEEL--GGLLPVGLAAPTGRAAKRL 384 (720)
T ss_pred CCCCHHHHHHHHHHHh-CCeEEEECCCCCCHHHHH-HHHHHHHHHc--CCCceEEEEeCchHHHHHH
Confidence 4799999999999976 457999999999999876 4555555552 2112788899998777643
No 373
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.19 E-value=0.046 Score=72.89 Aligned_cols=72 Identities=21% Similarity=0.213 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhc
Q 000129 496 LNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ 575 (2114)
Q Consensus 496 l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~ 575 (2114)
..++|+.|+..++.+ .-++|.|++|+|||.+..- ++..+..... ....++++.+||---|..+.+.......
T Consensus 153 ~~d~Qk~Av~~a~~~-~~~vItGgpGTGKTt~v~~-ll~~l~~~~~------~~~~~i~l~APTgkAA~rL~e~~~~~~~ 224 (615)
T PRK10875 153 EVDWQKVAAAVALTR-RISVISGGPGTGKTTTVAK-LLAALIQLAD------GERCRIRLAAPTGKAAARLTESLGKALR 224 (615)
T ss_pred CCHHHHHHHHHHhcC-CeEEEEeCCCCCHHHHHHH-HHHHHHHhcC------CCCcEEEEECCcHHHHHHHHHHHHhhhh
Confidence 458999999988765 4589999999999987532 2222222100 0234788999999998888887766544
No 374
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.06 E-value=0.042 Score=76.38 Aligned_cols=61 Identities=13% Similarity=0.119 Sum_probs=46.8
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~ 566 (2114)
.|++-|.+++..++.+.+.++|.|+.|+|||.+ +-++...+.. .+.+++.++||--.|..+
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~----------~G~~V~~~ApTGkAA~~L 406 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA----------AGYEVRGAALSGIAAENL 406 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH----------cCCeEEEecCcHHHHHHH
Confidence 699999999999998777789999999999986 3344444432 135799999997765443
No 375
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.05 E-value=0.039 Score=75.91 Aligned_cols=62 Identities=16% Similarity=0.082 Sum_probs=47.9
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHH
Q 000129 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKER 1406 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~ 1406 (2114)
..+++-|.+|+..++.+++.++|.|+.|+|||.+. -++...+.. .+. ++++++||--.+..+
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~~~--~g~--~V~~~ApTg~Aa~~L 412 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAWEA--AGY--RVIGAALSGKAAEGL 412 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHHHh--CCC--eEEEEeCcHHHHHHH
Confidence 46899999999999887777899999999999775 344555544 233 899999997666543
No 376
>PRK06526 transposase; Provisional
Probab=96.03 E-value=0.046 Score=65.30 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=19.2
Q ss_pred HcCCCcEEEEecCCCchHHHHHH
Q 000129 1354 YNTDDNVLVAAPTGSGKTICSEF 1376 (2114)
Q Consensus 1354 l~~~~nvli~ApTGSGKTl~~~l 1376 (2114)
...+.|++++||+|+|||..+.-
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~a 117 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIG 117 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHH
Confidence 45678999999999999987743
No 377
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.00 E-value=0.1 Score=65.91 Aligned_cols=148 Identities=22% Similarity=0.237 Sum_probs=78.9
Q ss_pred EccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhc-cCCcEEEEEeCCCccChh--
Q 000129 517 CAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVRELSGDQTLTRQ-- 593 (2114)
Q Consensus 517 ~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~-~~gi~v~~l~Gd~~~~~~-- 593 (2114)
.+.||||||++..-.||....++.. .-++.+..-..+.-...+|..-.. .+=.+-.+..+|....-.
T Consensus 3 ~matgsgkt~~ma~lil~~y~kgyr----------~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkv 72 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKKGYR----------NFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKV 72 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHhchh----------hEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeee
Confidence 4689999999988888887766532 456666666665555555433211 000011111222221111
Q ss_pred -----hhccceEEEcCHhHH-HHHHhccCC---CcccccccEE-EEecccccccC-C---------chhHHHHHHHHHHH
Q 000129 594 -----QIEETQIIVTTPEKW-DIITRKSGD---RTYTQLVKLL-IIDEIHLLHDN-R---------GPVLESIVARTVRQ 653 (2114)
Q Consensus 594 -----~~~~~~IiV~TPek~-d~l~r~~~~---~~~l~~v~li-IiDEaH~l~d~-r---------g~~le~iv~rl~~~ 653 (2114)
-.....|.++|...+ ..++|..-. ...+.+.++| +-||+|+|... . -..+++.+.-.
T Consensus 73 n~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la--- 149 (812)
T COG3421 73 NNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLA--- 149 (812)
T ss_pred cccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHH---
Confidence 123567999999987 334443221 2334455555 56999999541 1 12233332221
Q ss_pred HhhccccccEEEEccccCChHHHHH
Q 000129 654 IETTKEHIRLVGLSATLPNYEDVAL 678 (2114)
Q Consensus 654 ~~~~~~~~riv~lSATlpn~~dva~ 678 (2114)
.+ ..++--++.+|||+|-..+|..
T Consensus 150 ~~-~nkd~~~lef~at~~k~k~v~~ 173 (812)
T COG3421 150 LE-QNKDNLLLEFSATIPKEKSVED 173 (812)
T ss_pred Hh-cCCCceeehhhhcCCccccHHH
Confidence 12 2344456778999985444443
No 378
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=95.99 E-value=0.011 Score=74.77 Aligned_cols=67 Identities=21% Similarity=0.258 Sum_probs=58.1
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHH
Q 000129 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~ 1411 (2114)
+.+++-|++|+..+.+..+-.+|.||+|+|||.....-|.+.+.+ +. ++|+.+||.+-++-+.+++.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~---~k--~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ---KK--RVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc---CC--eEEEEcCchHHHHHHHHHhc
Confidence 578999999999999887878999999999998887777777766 45 99999999999999888644
No 379
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=95.98 E-value=0.013 Score=72.76 Aligned_cols=71 Identities=21% Similarity=0.134 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000129 1342 FNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2114)
Q Consensus 1342 ~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~ 1416 (2114)
+|+-|.+++.. ...+++|.|+.|||||.+...-+...+.... ...-+++++++|+..|.++..++...++.
T Consensus 1 l~~eQ~~~i~~---~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-~~~~~Il~lTft~~aa~e~~~ri~~~l~~ 71 (315)
T PF00580_consen 1 LTDEQRRIIRS---TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-VPPERILVLTFTNAAAQEMRERIRELLEE 71 (315)
T ss_dssp S-HHHHHHHHS----SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-STGGGEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC---CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-CChHHheecccCHHHHHHHHHHHHHhcCc
Confidence 57889999987 3677999999999999988777777666531 12238999999999999999999876654
No 380
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.93 E-value=0.054 Score=74.53 Aligned_cols=63 Identities=14% Similarity=0.192 Sum_probs=47.1
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHH
Q 000129 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~ 567 (2114)
..|++-|.+|+..++.++..++|.|+.|+|||.+.- ++...+... +.++++++||--.+..+.
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~-~i~~~~~~~----------g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLK-AAREAWEAA----------GYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHH-HHHHHHHhC----------CCeEEEEeCcHHHHHHHH
Confidence 368999999999998876778999999999997643 333433321 347999999977665543
No 381
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=95.91 E-value=0.034 Score=64.06 Aligned_cols=117 Identities=23% Similarity=0.363 Sum_probs=78.3
Q ss_pred CCChhhHhhcCCCCCCCHHHHHHHHHHHcC--CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 481 EMPEWAQPAFKGMTQLNRVQSRVYKSALSS--ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 481 ~lp~~~~~~f~g~~~l~~iQ~~~i~~~l~~--~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
+-|+|+.=-+.+---+++.|.++....+.. +.|.+...-.|.|||.|. +|++..+.... ..-+.+++|
T Consensus 9 ~~P~wLl~E~e~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI-~Pmla~~LAdg---------~~LvrviVp 78 (229)
T PF12340_consen 9 EYPDWLLFEIESNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVI-VPMLALALADG---------SRLVRVIVP 78 (229)
T ss_pred hChHHHHHHHHcCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchH-HHHHHHHHcCC---------CcEEEEEcC
Confidence 447777644433347899999999988863 578999999999999885 56666655431 124455555
Q ss_pred cHHHHHHHHHHHHHhhccC-CcEEEE--EeCCCccChh-----------hhccceEEEcCHhHH
Q 000129 559 MKALVAEVVGNLSNRLQMY-DVKVRE--LSGDQTLTRQ-----------QIEETQIIVTTPEKW 608 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~-gi~v~~--l~Gd~~~~~~-----------~~~~~~IiV~TPek~ 608 (2114)
++|..|..+.+..+++.. |-+|.. +.-+...+.. ......|+++|||.+
T Consensus 79 -k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhi 141 (229)
T PF12340_consen 79 -KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHI 141 (229)
T ss_pred -HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHH
Confidence 689999999999888632 323322 2333333322 123556999999975
No 382
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=95.82 E-value=0.05 Score=75.68 Aligned_cols=124 Identities=18% Similarity=0.199 Sum_probs=77.4
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000129 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g 1419 (2114)
..|++-|.+++..++.+++.++|.|+.|+|||++. -++.+.+.. .+. +++.++||--.+..+. ...|
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l-~~~~~~~e~--~G~--~V~~~ApTGkAA~~L~--------e~tG 411 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAML-GVAREAWEA--AGY--EVRGAALSGIAAENLE--------GGSG 411 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHH-HHHHHHHHH--cCC--eEEEecCcHHHHHHHh--------hccC
Confidence 36999999999999987777899999999999863 445555544 233 8999999976654432 1112
Q ss_pred cEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcc-cccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhc
Q 000129 1420 MRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQ-RKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQV 1498 (2114)
Q Consensus 1420 ~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~-~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~ 1498 (2114)
+.. .|-.+| +..|.. ...+...++|||||+-+++.. .+..++. .. .
T Consensus 412 i~a---------------------~TI~sl---l~~~~~~~~~l~~~~vlIVDEASMv~~~---~m~~LL~---~a---~ 458 (988)
T PRK13889 412 IAS---------------------RTIASL---EHGWGQGRDLLTSRDVLVIDEAGMVGTR---QLERVLS---HA---A 458 (988)
T ss_pred cch---------------------hhHHHH---HhhhcccccccccCcEEEEECcccCCHH---HHHHHHH---hh---h
Confidence 211 122222 223322 234667789999999998632 2222221 11 1
Q ss_pred CCCceEEEEcc
Q 000129 1499 ENKIRIVALST 1509 (2114)
Q Consensus 1499 ~~~~riV~lSA 1509 (2114)
....++|++.=
T Consensus 459 ~~garvVLVGD 469 (988)
T PRK13889 459 DAGAKVVLVGD 469 (988)
T ss_pred hCCCEEEEECC
Confidence 34678888763
No 383
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.82 E-value=0.064 Score=57.71 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=24.2
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEccc
Q 000129 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPL 1399 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Pt 1399 (2114)
..++++.||+|+|||..+.. +.+.+.. ... .++++...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~-i~~~~~~--~~~--~v~~~~~~ 56 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARA-IANELFR--PGA--PFLYLNAS 56 (151)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHhhc--CCC--CeEEEehh
Confidence 56799999999999976643 3333332 122 55665543
No 384
>PRK08181 transposase; Validated
Probab=95.77 E-value=0.077 Score=63.77 Aligned_cols=60 Identities=18% Similarity=0.221 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHH---HHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHH
Q 000129 1341 HFNPIQTQVFTV---LYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKER 1406 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~---il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~ 1406 (2114)
.+++.|..++.. +.+.+.|++++||+|+|||..+. ++.+.+.. .+. +++|+ +..+|+.+.
T Consensus 87 ~~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~-Aia~~a~~--~g~--~v~f~-~~~~L~~~l 149 (269)
T PRK08181 87 MVSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAA-AIGLALIE--NGW--RVLFT-RTTDLVQKL 149 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHH-HHHHHHHH--cCC--ceeee-eHHHHHHHH
Confidence 456677766643 44677899999999999997763 44444443 122 55554 445565554
No 385
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=95.76 E-value=0.019 Score=72.88 Aligned_cols=67 Identities=27% Similarity=0.399 Sum_probs=58.2
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
+.+++-|.+|+..+++..+-+++.||+|+|||......|.+.+.++ -++|+.+|+..-+.-+.+++.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~-----------k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQK-----------KRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcC-----------CeEEEEcCchHHHHHHHHHhc
Confidence 4789999999999998877789999999999999888888777664 289999999999998888654
No 386
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.73 E-value=0.078 Score=63.80 Aligned_cols=64 Identities=25% Similarity=0.272 Sum_probs=49.0
Q ss_pred CCCCCCHHHHHHHHHHHcCC-CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHH
Q 000129 492 GMTQLNRVQSRVYKSALSSA-DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV 563 (2114)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~-~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa 563 (2114)
|+.-.|..|.-|++.++..+ +-|.+.++-|||||+.|+.+.+.+....+. .-|+|+.=|+..+-
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~--------y~KiiVtRp~vpvG 289 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR--------YRKIIVTRPTVPVG 289 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh--------hceEEEecCCcCcc
Confidence 88889999999999877654 346688999999999999888877654321 23788887876653
No 387
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=95.72 E-value=0.031 Score=73.22 Aligned_cols=56 Identities=25% Similarity=0.297 Sum_probs=44.7
Q ss_pred CCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEE
Q 000129 818 DGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883 (2114)
Q Consensus 818 ~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~i 883 (2114)
+...+.|++-.+|-.|-|=|+|=.|.+ ..+.+ |..+=+|.+||.-|-.-+..|.-+
T Consensus 481 d~plRFIFS~waLrEGWDNPNVFtIck----L~~S~------SeiSK~QeVGRGLRLaVNe~G~RV 536 (985)
T COG3587 481 DEPLRFIFSKWALREGWDNPNVFTICK----LRSSG------SEISKLQEVGRGLRLAVNENGERV 536 (985)
T ss_pred CCcceeeeehhHHhhcCCCCCeeEEEE----ecCCC------cchHHHHHhccceeeeecccccee
Confidence 356899999999999999999999887 44433 677889999999996655555544
No 388
>PRK12377 putative replication protein; Provisional
Probab=95.64 E-value=0.089 Score=62.43 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=31.0
Q ss_pred CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHH
Q 000129 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYR 1408 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~ 1408 (2114)
+..++++.||+|+|||..+ .+|.+.+.. .+ ..+ +.++..+|..++..
T Consensus 100 ~~~~l~l~G~~GtGKThLa-~AIa~~l~~---~g-~~v-~~i~~~~l~~~l~~ 146 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLA-AAIGNRLLA---KG-RSV-IVVTVPDVMSRLHE 146 (248)
T ss_pred cCCeEEEECCCCCCHHHHH-HHHHHHHHH---cC-CCe-EEEEHHHHHHHHHH
Confidence 3467999999999999876 556666655 22 134 44455666665544
No 389
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.64 E-value=0.018 Score=61.40 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=16.6
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHH
Q 000129 510 SADNILLCAPTGAGKTNVAVLTILQQ 535 (2114)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l~il~~ 535 (2114)
++..++|+||+|+|||.++...+-..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHh
Confidence 34568999999999999876554443
No 390
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.64 E-value=0.044 Score=69.33 Aligned_cols=124 Identities=25% Similarity=0.367 Sum_probs=74.0
Q ss_pred CCCHHHHHHHHHHH-----cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHH--HHHHHHH
Q 000129 1341 HFNPIQTQVFTVLY-----NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKER--YRDWEIK 1413 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il-----~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~--~~~~~~~ 1413 (2114)
.+|+-|.+++..++ ..+.+++|.||-|+|||.++ -++...+.. .+. .+++++||-.-|..+ -..+.+.
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~-~~i~~~~~~--~~~--~~~~~a~tg~AA~~i~~G~T~hs~ 75 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI-KAIIDYLRS--RGK--KVLVTAPTGIAAFNIPGGRTIHSF 75 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH-HHHHHHhcc--ccc--eEEEecchHHHHHhccCCcchHHh
Confidence 47899999988873 34568999999999999765 333333333 233 789999998777655 2222222
Q ss_pred hcCCCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHH
Q 000129 1414 FGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRY 1493 (2114)
Q Consensus 1414 f~~~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~ 1493 (2114)
|+ +.+.. .. .... .+.+-. .....++.++++|+||+=++. ...++.+-.+++.
T Consensus 76 f~----i~~~~----~~-------~~~~---~~~~~~------~~~~~l~~~~~lIiDEism~~---~~~l~~i~~~lr~ 128 (364)
T PF05970_consen 76 FG----IPINN----NE-------KSQC---KISKNS------RLRERLRKADVLIIDEISMVS---ADMLDAIDRRLRD 128 (364)
T ss_pred cC----ccccc----cc-------cccc---cccccc------hhhhhhhhheeeecccccchh---HHHHHHHHHhhhh
Confidence 22 11100 00 0001 222211 123357789999999999885 3345556566666
Q ss_pred HHh
Q 000129 1494 IAS 1496 (2114)
Q Consensus 1494 i~~ 1496 (2114)
+..
T Consensus 129 i~~ 131 (364)
T PF05970_consen 129 IRK 131 (364)
T ss_pred hhc
Confidence 644
No 391
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=95.61 E-value=0.23 Score=68.10 Aligned_cols=52 Identities=27% Similarity=0.328 Sum_probs=46.2
Q ss_pred cccCCCCCHHHHHHHHhCCCchhhhccCChHHhhhhhcCchhHHHHHHHHhc
Q 000129 1144 LRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQ 1195 (2114)
Q Consensus 1144 l~q~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 1195 (2114)
|+.||||++..+++|-.+==+++++..++.++|.+++|.++.|+.|++++|.
T Consensus 759 L~~lPgI~~~~a~~ll~~f~si~~l~~as~eeL~~~iG~~~~A~~i~~fl~~ 810 (814)
T TIGR00596 759 LLKLPGVTKKNYRNLRKKVKSIRELAKLSQNELNELIGDEEAAKRLYDFLRT 810 (814)
T ss_pred HHHCCCCCHHHHHHHHHHcCCHHHHHhCCHHHHHHHhCCHHHHHHHHHHhcc
Confidence 7899999999999987763378889999999999999988999999999886
No 392
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.53 E-value=0.041 Score=59.26 Aligned_cols=21 Identities=43% Similarity=0.691 Sum_probs=16.9
Q ss_pred CCcEEEEccCCCchHHHHHHH
Q 000129 511 ADNILLCAPTGAGKTNVAVLT 531 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~ 531 (2114)
...+++.||+|+|||..+...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i 39 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAI 39 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 567999999999999765433
No 393
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.52 E-value=0.2 Score=63.18 Aligned_cols=132 Identities=14% Similarity=0.168 Sum_probs=73.9
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccC
Q 000129 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLT 591 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~ 591 (2114)
..++++||||+|||.++.-.+.+........ .....++.+=+.|.-+.++...+.+.+ |+.+..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~-----g~~V~lit~Dt~R~aa~eQL~~~a~~l---gvpv~~-------- 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDK-----SLNIKIITIDNYRIGAKKQIQTYGDIM---GIPVKA-------- 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccC-----CCeEEEEeccCccHHHHHHHHHHhhcC---CcceEe--------
Confidence 4689999999999988754333322211000 123344555566777777776666543 444321
Q ss_pred hhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhcccc-ccEEEEcccc
Q 000129 592 RQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEH-IRLVGLSATL 670 (2114)
Q Consensus 592 ~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~-~riv~lSATl 670 (2114)
+-+++.+...... ++..++||||++.+.+.. .. -+.++...+...... -.++.+|||.
T Consensus 239 ----------~~~~~~l~~~L~~------~~~~DlVLIDTaGr~~~~----~~-~l~el~~~l~~~~~~~e~~LVlsat~ 297 (388)
T PRK12723 239 ----------IESFKDLKEEITQ------SKDFDLVLVDTIGKSPKD----FM-KLAEMKELLNACGRDAEFHLAVSSTT 297 (388)
T ss_pred ----------eCcHHHHHHHHHH------hCCCCEEEEcCCCCCccC----HH-HHHHHHHHHHhcCCCCeEEEEEcCCC
Confidence 1234443222222 245799999999987521 11 134444444433333 4678899996
Q ss_pred CChHHHHHHHh
Q 000129 671 PNYEDVALFLR 681 (2114)
Q Consensus 671 pn~~dva~~l~ 681 (2114)
. ..++.+.+.
T Consensus 298 ~-~~~~~~~~~ 307 (388)
T PRK12723 298 K-TSDVKEIFH 307 (388)
T ss_pred C-HHHHHHHHH
Confidence 4 566665554
No 394
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.47 E-value=0.05 Score=71.72 Aligned_cols=79 Identities=28% Similarity=0.316 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHHHHc---CCCcEEEEccCCCchHHHHHHHHH---HHHHhcc--------C-------C---CCC----C
Q 000129 495 QLNRVQSRVYKSALS---SADNILLCAPTGAGKTNVAVLTIL---QQLALNR--------N-------D---DGS----F 546 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~---~~~nvlv~APTGsGKT~~a~l~il---~~l~~~~--------~-------~---~g~----~ 546 (2114)
.|++.|...+..++. ...|.++-.|||+|||++.+-..| +...... . + +|. .
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 678999887776654 345799999999999987544333 3332110 0 0 000 0
Q ss_pred C------CCCcEEEEEcccHHHHHHHHHHHHHh
Q 000129 547 N------HSNYKIVYVAPMKALVAEVVGNLSNR 573 (2114)
Q Consensus 547 ~------~~~~kil~iaP~raLa~q~~~~~~~~ 573 (2114)
. ...+++.|-.-|.+-..|+++++++.
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT 133 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRT 133 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhc
Confidence 0 13578999999998889999998874
No 395
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A ....
Probab=95.43 E-value=0.019 Score=52.31 Aligned_cols=54 Identities=22% Similarity=0.248 Sum_probs=49.5
Q ss_pred ccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHh
Q 000129 1934 MLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCN 1990 (2114)
Q Consensus 1934 ~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~ 1990 (2114)
.|.++||||+.++++|.+.| +.|+.||..+++++...+-++++...+.+.+.++
T Consensus 6 ~L~~I~Gig~~~a~~L~~~G---~~t~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~ 59 (60)
T PF14520_consen 6 DLLSIPGIGPKRAEKLYEAG---IKTLEDLANADPEELAEIPGIGEKTAEKIIEAAR 59 (60)
T ss_dssp HHHTSTTCHHHHHHHHHHTT---CSSHHHHHTSHHHHHHTSTTSSHHHHHHHHHHHH
T ss_pred hhccCCCCCHHHHHHHHhcC---CCcHHHHHcCCHHHHhcCCCCCHHHHHHHHHHHh
Confidence 47789999999999999999 9999999999998888888899999999988775
No 396
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.41 E-value=0.2 Score=58.63 Aligned_cols=123 Identities=18% Similarity=0.276 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHHcCCC----cEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000129 1343 NPIQTQVFTVLYNTDD----NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2114)
Q Consensus 1343 ~~iQ~q~~~~il~~~~----nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~ 1418 (2114)
|..=..+...+.++.+ .++|.||+|+|||-. +.++.+.+.+..++. +++|+... +.+......++.
T Consensus 16 N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHL-L~Ai~~~~~~~~~~~--~v~y~~~~-~f~~~~~~~~~~------ 85 (219)
T PF00308_consen 16 NELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHL-LQAIANEAQKQHPGK--RVVYLSAE-EFIREFADALRD------ 85 (219)
T ss_dssp THHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHH-HHHHHHHHHHHCTTS---EEEEEHH-HHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHH-HHHHHHHHHhccccc--cceeecHH-HHHHHHHHHHHc------
Confidence 4433445555544332 489999999999985 467777666543444 88887643 444433332220
Q ss_pred CcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhc
Q 000129 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQV 1498 (2114)
Q Consensus 1419 g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~ 1498 (2114)
+.+..+..+ +...++++||++|.+.+.. ..-+.+...+..+..
T Consensus 86 ----------------------------~~~~~~~~~------~~~~DlL~iDDi~~l~~~~-~~q~~lf~l~n~~~~-- 128 (219)
T PF00308_consen 86 ----------------------------GEIEEFKDR------LRSADLLIIDDIQFLAGKQ-RTQEELFHLFNRLIE-- 128 (219)
T ss_dssp ----------------------------TSHHHHHHH------HCTSSEEEEETGGGGTTHH-HHHHHHHHHHHHHHH--
T ss_pred ----------------------------ccchhhhhh------hhcCCEEEEecchhhcCch-HHHHHHHHHHHHHHh--
Confidence 011112222 4578999999999987532 233455555555433
Q ss_pred CCCceEEEEcccCCC
Q 000129 1499 ENKIRIVALSTSLAN 1513 (2114)
Q Consensus 1499 ~~~~riV~lSATl~n 1513 (2114)
.+.++|+.|...|.
T Consensus 129 -~~k~li~ts~~~P~ 142 (219)
T PF00308_consen 129 -SGKQLILTSDRPPS 142 (219)
T ss_dssp -TTSEEEEEESS-TT
T ss_pred -hCCeEEEEeCCCCc
Confidence 35678877766654
No 397
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=95.37 E-value=0.046 Score=72.62 Aligned_cols=123 Identities=20% Similarity=0.199 Sum_probs=83.0
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000129 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~ 1418 (2114)
+..+|..|++|+..++...+-.+|.|=+|+|||......| +.+.. .++ +++..+=|...++.+.-.++ .++
T Consensus 667 ~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LI-kiL~~--~gk--kVLLtsyThsAVDNILiKL~-~~~--- 737 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLI-KILVA--LGK--KVLLTSYTHSAVDNILIKLK-GFG--- 737 (1100)
T ss_pred HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHH-HHHHH--cCC--eEEEEehhhHHHHHHHHHHh-ccC---
Confidence 5689999999999999989989999999999998764443 33333 244 89999999999998888776 232
Q ss_pred CcEEEEEcC---------------Ccccc-----hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEeccccccc
Q 000129 1419 GMRVVELTG---------------ETAMD-----LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (2114)
Q Consensus 1419 g~~v~~l~G---------------~~~~~-----~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~ 1477 (2114)
+.+.-+.. +.+.. .+.+.+..|+.||-=-+...+. ..+.++++|||||-.+.
T Consensus 738 -i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf------~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 738 -IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF------VNRQFDYCIIDEASQIL 809 (1100)
T ss_pred -cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh------hccccCEEEEccccccc
Confidence 22222221 11111 2345667888888432221111 23458999999998765
No 398
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.37 E-value=0.16 Score=58.36 Aligned_cols=124 Identities=16% Similarity=0.170 Sum_probs=70.3
Q ss_pred cEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhhccC
Q 000129 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEK 1438 (2114)
Q Consensus 1359 nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~l~~ 1438 (2114)
.+++.||||+|||++..=...+...+ +..+..+.+=..|.=+.++.+.+.+.+ |+.+....-..
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga~eQL~~~a~~l----~vp~~~~~~~~--------- 66 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGAVEQLKTYAEIL----GVPFYVARTES--------- 66 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHHHHHHHHHHHHH----TEEEEESSTTS---------
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccHHHHHHHHHHHh----ccccchhhcch---------
Confidence 47889999999998764333332222 332233444456878888888777555 44443311110
Q ss_pred CcEEEEChhh-HHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCC
Q 000129 1439 GQIIISTPEK-WDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (2114)
Q Consensus 1439 ~~IIV~TPe~-l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n 1513 (2114)
.|.. +...++. ..-++.++|+||=+.+. +.-+..+..++.+.....+.-.++.+|||...
T Consensus 67 ------~~~~~~~~~l~~----~~~~~~D~vlIDT~Gr~-----~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~ 127 (196)
T PF00448_consen 67 ------DPAEIAREALEK----FRKKGYDLVLIDTAGRS-----PRDEELLEELKKLLEALNPDEVHLVLSATMGQ 127 (196)
T ss_dssp ------CHHHHHHHHHHH----HHHTTSSEEEEEE-SSS-----STHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG
T ss_pred ------hhHHHHHHHHHH----HhhcCCCEEEEecCCcc-----hhhHHHHHHHHHHhhhcCCccceEEEecccCh
Confidence 1111 1112221 11245789999988643 33344667777766666666778899999854
No 399
>PRK12377 putative replication protein; Provisional
Probab=95.31 E-value=0.098 Score=62.11 Aligned_cols=48 Identities=15% Similarity=0.312 Sum_probs=29.8
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
..+++++||+|+|||-.+.. |.+.+... +..++| .+..+|..++...+
T Consensus 101 ~~~l~l~G~~GtGKThLa~A-Ia~~l~~~----------g~~v~~-i~~~~l~~~l~~~~ 148 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAA-IGNRLLAK----------GRSVIV-VTVPDVMSRLHESY 148 (248)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHHc----------CCCeEE-EEHHHHHHHHHHHH
Confidence 45799999999999987643 44444332 123444 45566766654443
No 400
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.30 E-value=0.19 Score=59.60 Aligned_cols=60 Identities=12% Similarity=0.107 Sum_probs=35.7
Q ss_pred CCCCCHHHHHHHHHHHc-------CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHH
Q 000129 1339 FKHFNPIQTQVFTVLYN-------TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~-------~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~ 1404 (2114)
|...++.|.+++..+.. +..++++.|++|+|||..+ .++.+.+... +. .++|+ +..+|..
T Consensus 74 f~~~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa-~aia~~l~~~--g~--~v~~i-t~~~l~~ 140 (244)
T PRK07952 74 YRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLA-AAICNELLLR--GK--SVLII-TVADIMS 140 (244)
T ss_pred ccCCCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHH-HHHHHHHHhc--CC--eEEEE-EHHHHHH
Confidence 33345566666554431 1247999999999999877 4566666551 22 55555 4444433
No 401
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.29 E-value=0.083 Score=72.45 Aligned_cols=64 Identities=17% Similarity=0.230 Sum_probs=46.1
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHH
Q 000129 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~ 567 (2114)
..+++-|.+|+..+..+ ..++|.|+.|+|||.+.- .++..+.... ....++.++||-.-|..+.
T Consensus 322 ~~l~~~Q~~Ai~~~~~~-~~~iitGgpGTGKTt~l~-~i~~~~~~~~--------~~~~v~l~ApTg~AA~~L~ 385 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQH-KVVILTGGPGTGKTTITR-AIIELAEELG--------GLLPVGLAAPTGRAAKRLG 385 (720)
T ss_pred CCCCHHHHHHHHHHHhC-CeEEEECCCCCCHHHHHH-HHHHHHHHcC--------CCceEEEEeCchHHHHHHH
Confidence 37899999999988654 579999999999998653 3444443221 1146888999988776443
No 402
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.25 E-value=0.17 Score=58.04 Aligned_cols=130 Identities=19% Similarity=0.205 Sum_probs=72.0
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccCh
Q 000129 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR 592 (2114)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~ 592 (2114)
.++++||||+|||....--..+...++ .+.-.+-+=..|.=+.++.+.+.+.+ |+.+....-..
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~---------~~v~lis~D~~R~ga~eQL~~~a~~l---~vp~~~~~~~~---- 66 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKG---------KKVALISADTYRIGAVEQLKTYAEIL---GVPFYVARTES---- 66 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT-----------EEEEEESTSSTHHHHHHHHHHHHH---TEEEEESSTTS----
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhcc---------ccceeecCCCCCccHHHHHHHHHHHh---ccccchhhcch----
Confidence 367899999999987654444443332 12334444567778888888887765 44443321110
Q ss_pred hhhccceEEEcCHhH-H-HHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEcccc
Q 000129 593 QQIEETQIIVTTPEK-W-DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670 (2114)
Q Consensus 593 ~~~~~~~IiV~TPek-~-d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATl 670 (2114)
.|.. + +.+.+ ...+++++|+||-+-+ .+.-...+..+....+...+.--++.+|||.
T Consensus 67 -----------~~~~~~~~~l~~-----~~~~~~D~vlIDT~Gr-----~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~ 125 (196)
T PF00448_consen 67 -----------DPAEIAREALEK-----FRKKGYDLVLIDTAGR-----SPRDEELLEELKKLLEALNPDEVHLVLSATM 125 (196)
T ss_dssp -----------CHHHHHHHHHHH-----HHHTTSSEEEEEE-SS-----SSTHHHHHHHHHHHHHHHSSSEEEEEEEGGG
T ss_pred -----------hhHHHHHHHHHH-----HhhcCCCEEEEecCCc-----chhhHHHHHHHHHHhhhcCCccceEEEeccc
Confidence 1211 1 11111 1123478999999865 3334444555544444445566678899997
Q ss_pred CChHHHHHHH
Q 000129 671 PNYEDVALFL 680 (2114)
Q Consensus 671 pn~~dva~~l 680 (2114)
.. +++..+.
T Consensus 126 ~~-~~~~~~~ 134 (196)
T PF00448_consen 126 GQ-EDLEQAL 134 (196)
T ss_dssp GG-HHHHHHH
T ss_pred Ch-HHHHHHH
Confidence 53 4444333
No 403
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.18 E-value=0.082 Score=69.86 Aligned_cols=74 Identities=22% Similarity=0.368 Sum_probs=51.6
Q ss_pred CCCHHHHHHHHHHH---cCCCcEEEEecCCCchHHHH---HHHHHHHhhhcc--------C-------------------
Q 000129 1341 HFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICS---EFAILRNHQKAS--------E------------------- 1387 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il---~~~~nvli~ApTGSGKTl~~---~l~il~~l~~~~--------~------------------- 1387 (2114)
.|+|.|..-...++ ....|.++-+|||+|||++. .||-.+++.... .
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 57888987766654 34667999999999999654 455555554110 0
Q ss_pred -------CCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000129 1388 -------TGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2114)
Q Consensus 1388 -------~~~~k~l~I~Ptr~La~q~~~~~~~~f~ 1415 (2114)
.+.+++.|-.-|..-..|+.++++ +++
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElr-rT~ 134 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELR-RTG 134 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHh-hcC
Confidence 012678888888888889998887 443
No 404
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=95.04 E-value=0.2 Score=70.39 Aligned_cols=124 Identities=18% Similarity=0.268 Sum_probs=77.1
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000129 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g 1419 (2114)
..|++-|.+++..+..++.-++|.|+.|+|||++. -++.+.+.. .+. +++-++||---+..+.+ . .|
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l-~~~~~~~e~--~G~--~V~g~ApTgkAA~~L~e----~----~G 446 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMM-KAAREAWEA--AGY--RVVGGALAGKAAEGLEK----E----AG 446 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHH-HHHHHHHHH--cCC--eEEEEcCcHHHHHHHHH----h----hC
Confidence 47999999999998776777899999999999765 345555554 233 89999999766654322 1 12
Q ss_pred cEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhc-ccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhc
Q 000129 1420 MRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWK-QRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQV 1498 (2114)
Q Consensus 1420 ~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~-~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~ 1498 (2114)
+.. .|-.+| +.+|. ....+..-++|||||+.+++.. .+..++..+.
T Consensus 447 i~a---------------------~TIas~---ll~~~~~~~~l~~~~vlVIDEAsMv~~~---~m~~Ll~~~~------ 493 (1102)
T PRK13826 447 IQS---------------------RTLSSW---ELRWNQGRDQLDNKTVFVLDEAGMVASR---QMALFVEAVT------ 493 (1102)
T ss_pred CCe---------------------eeHHHH---HhhhccCccCCCCCcEEEEECcccCCHH---HHHHHHHHHH------
Confidence 221 121121 11221 2234566789999999998632 2222332221
Q ss_pred CCCceEEEEcc
Q 000129 1499 ENKIRIVALST 1509 (2114)
Q Consensus 1499 ~~~~riV~lSA 1509 (2114)
....++|++.=
T Consensus 494 ~~garvVLVGD 504 (1102)
T PRK13826 494 RAGAKLVLVGD 504 (1102)
T ss_pred hcCCEEEEECC
Confidence 24678887763
No 405
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.04 E-value=0.07 Score=63.93 Aligned_cols=123 Identities=20% Similarity=0.246 Sum_probs=71.4
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHhhhccCCC--ceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhh
Q 000129 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETG--VMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKL 1435 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~--~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~ 1435 (2114)
.|++|+|+||.|||.+..-..-.|-....... .+-+++-+|...-....|..+-..++-..+- .+.....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~------~~~~~~~-- 133 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRP------RDRVAKL-- 133 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCC------CCCHHHH--
Confidence 48999999999999866443333222111111 1344555777777777777766665532100 0000000
Q ss_pred ccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEE
Q 000129 1436 LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVAL 1507 (2114)
Q Consensus 1436 l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~l 1507 (2114)
-.+...+++. .+++++||||+|.+....+..-..++.-+|++...+ .+.+|++
T Consensus 134 ----------~~~~~~llr~-------~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL--~ipiV~v 186 (302)
T PF05621_consen 134 ----------EQQVLRLLRR-------LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNEL--QIPIVGV 186 (302)
T ss_pred ----------HHHHHHHHHH-------cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhcc--CCCeEEe
Confidence 0111234443 357899999999887655555677888889887655 4556655
No 406
>PRK08181 transposase; Validated
Probab=95.01 E-value=0.13 Score=61.75 Aligned_cols=60 Identities=23% Similarity=0.414 Sum_probs=35.7
Q ss_pred CCHHHHHHHH---HHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHH
Q 000129 496 LNRVQSRVYK---SALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (2114)
Q Consensus 496 l~~iQ~~~i~---~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~ 567 (2114)
+++.|..++. ..+....|++++||+|+|||-.+.......+..+ .+++|+ +...|+.++.
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g-----------~~v~f~-~~~~L~~~l~ 150 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENG-----------WRVLFT-RTTDLVQKLQ 150 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcC-----------Cceeee-eHHHHHHHHH
Confidence 3445555553 2345678999999999999976653333333221 245554 4555655553
No 407
>PRK06526 transposase; Provisional
Probab=94.99 E-value=0.13 Score=61.62 Aligned_cols=29 Identities=24% Similarity=0.504 Sum_probs=21.6
Q ss_pred HcCCCcEEEEccCCCchHHHHHHHHHHHH
Q 000129 508 LSSADNILLCAPTGAGKTNVAVLTILQQL 536 (2114)
Q Consensus 508 l~~~~nvlv~APTGsGKT~~a~l~il~~l 536 (2114)
+....|++++||+|+|||..+.-......
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHHH
Confidence 34567999999999999987754444333
No 408
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.95 E-value=0.68 Score=57.68 Aligned_cols=143 Identities=17% Similarity=0.241 Sum_probs=81.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCcc
Q 000129 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~ 590 (2114)
+..+.+.||||.|||+.-.--+.+....+.. .+..+|=+=..|-=|.++.+.+.+.+ |+.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~-------~kVaiITtDtYRIGA~EQLk~Ya~im---~vp~--------- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKK-------KKVAIITTDTYRIGAVEQLKTYADIM---GVPL--------- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccC-------cceEEEEeccchhhHHHHHHHHHHHh---CCce---------
Confidence 5678999999999997654333333322211 12223333345666777777776654 3433
Q ss_pred ChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEcccc
Q 000129 591 TRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670 (2114)
Q Consensus 591 ~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATl 670 (2114)
.+|-+|.-++.-. ..++++++|.||=+-+ ++.-...++.+........+--..+.+|||
T Consensus 264 ---------~vv~~~~el~~ai------~~l~~~d~ILVDTaGr-----s~~D~~~i~el~~~~~~~~~i~~~Lvlsat- 322 (407)
T COG1419 264 ---------EVVYSPKELAEAI------EALRDCDVILVDTAGR-----SQYDKEKIEELKELIDVSHSIEVYLVLSAT- 322 (407)
T ss_pred ---------EEecCHHHHHHHH------HHhhcCCEEEEeCCCC-----CccCHHHHHHHHHHHhccccceEEEEEecC-
Confidence 3444565442211 2345568888888753 333334444544444443344456889999
Q ss_pred CChHHHHHHHhccccCceEeecCCcccccceeEEE
Q 000129 671 PNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI 705 (2114)
Q Consensus 671 pn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~ 705 (2114)
..++|+.+.+. .|+.+++...++
T Consensus 323 ~K~~dlkei~~------------~f~~~~i~~~I~ 345 (407)
T COG1419 323 TKYEDLKEIIK------------QFSLFPIDGLIF 345 (407)
T ss_pred cchHHHHHHHH------------HhccCCcceeEE
Confidence 46788877664 345666665443
No 409
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=94.93 E-value=0.085 Score=57.07 Aligned_cols=89 Identities=15% Similarity=0.176 Sum_probs=61.1
Q ss_pred ceEeecCCCCHHHHHHHHHHHhcCC-ceEEEecCccccccCCCCc---EEEEEeeeEecCCc----------------C-
Q 000129 1635 GVGYLHEGLNKTDQEVVSALFEAGK-IKVCVMSSSMCWGVPLTAH---LVVVMGTQYYDGQE----------------N- 1693 (2114)
Q Consensus 1635 gV~~~H~~ls~~dR~~v~~~F~~g~-i~VLVaT~~la~Gvdip~~---~vVI~gt~~yd~~~----------------~- 1693 (2114)
+..++..+....+...+++.|++.. ..||++|..+..|+|+|+. .+||.|.++-.... .
T Consensus 23 ~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~ 102 (141)
T smart00492 23 NLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRP 102 (141)
T ss_pred CCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCc
Confidence 4456666777777888999998754 3799999889999999964 56777766542220 0
Q ss_pred c---CCCCCHhHHHHhHcccCCCCCCCceEEEEE
Q 000129 1694 A---HTDYPVTDLLQMMGHASRPLLDNSGKCVIL 1724 (2114)
Q Consensus 1694 ~---~~~~s~~~~lQr~GRAGR~~~~~~G~~iil 1724 (2114)
+ +.|.....+.|.+||+-|.. +..|.++++
T Consensus 103 ~~~~~~~~a~~~l~Qa~GR~iR~~-~D~g~i~l~ 135 (141)
T smart00492 103 FDFVSLPDAMRTLAQCVGRLIRGA-NDYGVVVIA 135 (141)
T ss_pred hhHHHHHHHHHHHHHHhCccccCc-CceEEEEEE
Confidence 0 11223567889999999975 456655544
No 410
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=94.84 E-value=0.2 Score=70.29 Aligned_cols=62 Identities=18% Similarity=0.185 Sum_probs=46.4
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000129 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~ 566 (2114)
..|++-|.+++..+..++.-++|.|+-|+|||.+.- ++...+.. .+.+++-++||-.-|..+
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~-~~~~~~e~----------~G~~V~g~ApTgkAA~~L 441 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMK-AAREAWEA----------AGYRVVGGALAGKAAEGL 441 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHH-HHHHHHHH----------cCCeEEEEcCcHHHHHHH
Confidence 479999999999887667778999999999997643 33333332 235899999997766554
No 411
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=94.81 E-value=0.063 Score=67.95 Aligned_cols=108 Identities=23% Similarity=0.368 Sum_probs=64.6
Q ss_pred CCCHHHHHHHHHHH-----cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH--H
Q 000129 495 QLNRVQSRVYKSAL-----SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV--V 567 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l-----~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~--~ 567 (2114)
+||+-|..++..++ ....++.|.||-|+|||.+.- ++.+.+.. .+..+++++||-.-|.-+ .
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~-~i~~~~~~----------~~~~~~~~a~tg~AA~~i~~G 69 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIK-AIIDYLRS----------RGKKVLVTAPTGIAAFNIPGG 69 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHH-HHHHHhcc----------ccceEEEecchHHHHHhccCC
Confidence 47899999988773 345679999999999998642 22222221 234799999998776655 2
Q ss_pred HHHHHhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccc
Q 000129 568 GNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2114)
Q Consensus 568 ~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (2114)
..+...| ++.+.. .. .... .+++ .......++.+++|||||+=+++
T Consensus 70 ~T~hs~f---~i~~~~----~~-------~~~~---~~~~------~~~~~~~l~~~~~lIiDEism~~ 115 (364)
T PF05970_consen 70 RTIHSFF---GIPINN----NE-------KSQC---KISK------NSRLRERLRKADVLIIDEISMVS 115 (364)
T ss_pred cchHHhc---Cccccc----cc-------cccc---cccc------cchhhhhhhhheeeecccccchh
Confidence 3333333 222211 00 0000 2221 11122456778999999999875
No 412
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.79 E-value=0.29 Score=65.53 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=25.2
Q ss_pred cE-EEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 513 NI-LLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 513 nv-lv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
++ +|+||||+|||.+.-.. ++.+...... .....+.++||=-
T Consensus 782 nvLYIyG~PGTGKTATVK~V-LrELqeeaeq---k~lp~f~vVYINC 824 (1164)
T PTZ00112 782 QILYISGMPGTGKTATVYSV-IQLLQHKTKQ---KLLPSFNVFEING 824 (1164)
T ss_pred ceEEEECCCCCCHHHHHHHH-HHHHHHHHhh---ccCCCceEEEEeC
Confidence 45 59999999999987654 3444322111 0123467788843
No 413
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=94.77 E-value=0.052 Score=74.11 Aligned_cols=86 Identities=20% Similarity=0.163 Sum_probs=65.0
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.||+-|.+|+.. ...+++|.|..|||||.+...-+.+.+..... ++-++++++.|+..|.++.+++.+.+
T Consensus 2 ~Ln~~Q~~av~~---~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v-------~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY-------QARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCC-------CHHHeeeEechHHHHHHHHHHHHHHh
Confidence 489999999864 34569999999999999987777777654211 23379999999999999999998765
Q ss_pred ccCCcEEEEEeCCCccChhhhccceEEEcCHhHH
Q 000129 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW 608 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~ 608 (2114)
+.. ....+.|+|...|
T Consensus 72 ~~~------------------~~~~v~i~TfHS~ 87 (672)
T PRK10919 72 GRK------------------EARGLMISTFHTL 87 (672)
T ss_pred Ccc------------------cccCcEEEcHHHH
Confidence 310 0124778898876
No 414
>PRK11054 helD DNA helicase IV; Provisional
Probab=94.72 E-value=0.061 Score=72.93 Aligned_cols=84 Identities=26% Similarity=0.268 Sum_probs=64.0
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHh
Q 000129 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~ 573 (2114)
..||+-|.+|+. .+.++++|.|..|||||.+..--+...+..+.. .+-++++++.++..|.++.+++..+
T Consensus 195 ~~L~~~Q~~av~---~~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~-------~~~~IL~ltft~~AA~em~eRL~~~ 264 (684)
T PRK11054 195 SPLNPSQARAVV---NGEDSLLVLAGAGSGKTSVLVARAGWLLARGQA-------QPEQILLLAFGRQAAEEMDERIRER 264 (684)
T ss_pred CCCCHHHHHHHh---CCCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCC-------CHHHeEEEeccHHHHHHHHHHHHHh
Confidence 368999999885 344678999999999999987666655544321 2347999999999999999999876
Q ss_pred hccCCcEEEEEeCCCccChhhhccceEEEcCHhHH
Q 000129 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW 608 (2114)
Q Consensus 574 ~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~ 608 (2114)
++ ...|-|+|-..|
T Consensus 265 lg---------------------~~~v~v~TFHSl 278 (684)
T PRK11054 265 LG---------------------TEDITARTFHAL 278 (684)
T ss_pred cC---------------------CCCcEEEeHHHH
Confidence 42 035778888876
No 415
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=94.62 E-value=0.16 Score=59.98 Aligned_cols=44 Identities=20% Similarity=0.267 Sum_probs=27.9
Q ss_pred ccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEcccc
Q 000129 620 YTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670 (2114)
Q Consensus 620 ~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATl 670 (2114)
..+.++.||+||||.|..+- -+.+++.++......|+++..--+
T Consensus 126 ~~~~fKiiIlDEcdsmtsda-------q~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSDA-------QAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred CCCcceEEEEechhhhhHHH-------HHHHHHHHhccccceEEEEEcCCh
Confidence 44557999999999885321 122334445556677888776554
No 416
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.53 E-value=0.1 Score=64.06 Aligned_cols=61 Identities=31% Similarity=0.316 Sum_probs=47.7
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHH
Q 000129 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEAL 1402 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~L 1402 (2114)
...+++.|.+.+..+...+.|++|+||||||||+.. -+++..+....+.. +++++--..|+
T Consensus 114 ~g~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~~~~~--ri~tiEd~~El 174 (299)
T TIGR02782 114 AGIMTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKNDPTD--RVVIIEDTREL 174 (299)
T ss_pred cCCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhccCCCc--eEEEECCchhh
Confidence 346788888999988888899999999999999876 55666665422334 88999888887
No 417
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.52 E-value=0.44 Score=56.54 Aligned_cols=26 Identities=27% Similarity=0.537 Sum_probs=19.2
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHh
Q 000129 512 DNILLCAPTGAGKTNVAVLTILQQLAL 538 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~ 538 (2114)
.++++++|+|+|||..+. +|...+..
T Consensus 100 ~~~~l~G~~GtGKThLa~-aia~~l~~ 125 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA-AICNELLL 125 (244)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHh
Confidence 469999999999998765 44444443
No 418
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.51 E-value=0.087 Score=64.78 Aligned_cols=62 Identities=21% Similarity=0.272 Sum_probs=47.8
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHH
Q 000129 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La 1403 (2114)
...+++.|.+.+..+...+.|++|+|+||||||+.. -+++..+....+.. +++.+-.+.||.
T Consensus 126 ~g~~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~~~~~--rivtiEd~~El~ 187 (323)
T PRK13833 126 SKIMTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVASAPED--RLVILEDTAEIQ 187 (323)
T ss_pred cCCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcCCCCc--eEEEecCCcccc
Confidence 345788999999999888999999999999999865 56666654322333 888888888873
No 419
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.44 E-value=0.092 Score=55.88 Aligned_cols=44 Identities=27% Similarity=0.429 Sum_probs=28.4
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHH
Q 000129 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q 1405 (2114)
+.++++.||+|||||.++... ...+.. ... .++++.+.......
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l-~~~~~~--~~~--~~~~~~~~~~~~~~ 45 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARAL-ARELGP--PGG--GVIYIDGEDILEEV 45 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHH-HhccCC--CCC--CEEEECCEEccccC
Confidence 457999999999999887443 333322 111 47788777655443
No 420
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.41 E-value=0.29 Score=61.37 Aligned_cols=123 Identities=12% Similarity=0.177 Sum_probs=65.1
Q ss_pred cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEc--ccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccc
Q 000129 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA--PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD 1432 (2114)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~--Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~ 1432 (2114)
..+.++++.||||+|||+.+...+.+.... .... ++.++. +.|.-+.++.+.|.+.+ |+.+.
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~-~G~~--~V~lit~D~~R~ga~EqL~~~a~~~----gv~~~--------- 198 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMR-FGAS--KVALLTTDSYRIGGHEQLRIFGKIL----GVPVH--------- 198 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHh-cCCC--eEEEEecccccccHHHHHHHHHHHc----CCceE---------
Confidence 346789999999999998875444333322 1112 443332 22444556666665433 33332
Q ss_pred hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCC
Q 000129 1433 LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512 (2114)
Q Consensus 1433 ~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~ 1512 (2114)
.+.+++.+...+.+ +.+.++|+||.+-.... ... +...+..+.......-+++.+|||..
T Consensus 199 ---------~~~~~~~l~~~l~~------l~~~DlVLIDTaG~~~~--d~~---l~e~La~L~~~~~~~~~lLVLsAts~ 258 (374)
T PRK14722 199 ---------AVKDGGDLQLALAE------LRNKHMVLIDTIGMSQR--DRT---VSDQIAMLHGADTPVQRLLLLNATSH 258 (374)
T ss_pred ---------ecCCcccHHHHHHH------hcCCCEEEEcCCCCCcc--cHH---HHHHHHHHhccCCCCeEEEEecCccC
Confidence 23334444334443 34568999999964321 112 33333333222223456888999974
Q ss_pred C
Q 000129 1513 N 1513 (2114)
Q Consensus 1513 n 1513 (2114)
.
T Consensus 259 ~ 259 (374)
T PRK14722 259 G 259 (374)
T ss_pred h
Confidence 3
No 421
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.39 E-value=0.17 Score=61.09 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=17.6
Q ss_pred CcEEEEccCCCchHHHHHHHH
Q 000129 512 DNILLCAPTGAGKTNVAVLTI 532 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~i 532 (2114)
.++++.||+|+|||.++-...
T Consensus 43 ~~vll~GppGtGKTtlA~~ia 63 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILG 63 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHH
Confidence 479999999999999885543
No 422
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.38 E-value=0.44 Score=59.78 Aligned_cols=130 Identities=17% Similarity=0.167 Sum_probs=66.5
Q ss_pred HcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc--ccHHHHHHHHHHHHHhhccCCcEEEEEe
Q 000129 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA--PMKALVAEVVGNLSNRLQMYDVKVRELS 585 (2114)
Q Consensus 508 l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~ia--P~raLa~q~~~~~~~~~~~~gi~v~~l~ 585 (2114)
+..+.+++++||||+|||..+...+.+...... ..++.++. +.|.=+.++.+.+.+.+ |+.+...
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G---------~~~V~lit~D~~R~ga~EqL~~~a~~~---gv~~~~~- 200 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFG---------ASKVALLTTDSYRIGGHEQLRIFGKIL---GVPVHAV- 200 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC---------CCeEEEEecccccccHHHHHHHHHHHc---CCceEec-
Confidence 344668999999999999887554444433221 11343332 23444666666666543 4444322
Q ss_pred CCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEE
Q 000129 586 GDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVG 665 (2114)
Q Consensus 586 Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~ 665 (2114)
.+++.+...... +.+.++|+||.+-+.. +...+...+..+. ......-+++.
T Consensus 201 -----------------~~~~~l~~~l~~------l~~~DlVLIDTaG~~~--~d~~l~e~La~L~---~~~~~~~~lLV 252 (374)
T PRK14722 201 -----------------KDGGDLQLALAE------LRNKHMVLIDTIGMSQ--RDRTVSDQIAMLH---GADTPVQRLLL 252 (374)
T ss_pred -----------------CCcccHHHHHHH------hcCCCEEEEcCCCCCc--ccHHHHHHHHHHh---ccCCCCeEEEE
Confidence 223222122222 2345899999996432 1122222222221 11223345888
Q ss_pred EccccCChHHHHHH
Q 000129 666 LSATLPNYEDVALF 679 (2114)
Q Consensus 666 lSATlpn~~dva~~ 679 (2114)
+|||.. .+++...
T Consensus 253 LsAts~-~~~l~ev 265 (374)
T PRK14722 253 LNATSH-GDTLNEV 265 (374)
T ss_pred ecCccC-hHHHHHH
Confidence 999953 4444433
No 423
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=94.29 E-value=0.14 Score=67.43 Aligned_cols=70 Identities=13% Similarity=0.184 Sum_probs=52.5
Q ss_pred CCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEE-----------EEEee
Q 000129 1658 GKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKC-----------VILCH 1726 (2114)
Q Consensus 1658 g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~-----------iil~~ 1726 (2114)
.-.+.|++-.+|-.|.|=|+|-.|++ ....-|..+=+|-+||.-|-..+..|.- .+++.
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIck----------L~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~ 551 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICK----------LRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVN 551 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEE----------ecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEec
Confidence 34789999999999999999999882 2233466778999999999654555543 44677
Q ss_pred cCcHHHHHHHH
Q 000129 1727 APRKEYYKKFL 1737 (2114)
Q Consensus 1727 ~~~~~~~~~~l 1737 (2114)
.+.+++.+.+.
T Consensus 552 ~sek~Fv~~Lq 562 (985)
T COG3587 552 ESEKDFVKALQ 562 (985)
T ss_pred ccHHHHHHHHH
Confidence 77777777666
No 424
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=94.25 E-value=0.75 Score=60.56 Aligned_cols=157 Identities=14% Similarity=0.171 Sum_probs=87.4
Q ss_pred CCHHHHHHHHHHHc--CCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHh
Q 000129 496 LNRVQSRVYKSALS--SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2114)
Q Consensus 496 l~~iQ~~~i~~~l~--~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~ 573 (2114)
++|.=.+-++.+++ +..-.++.+|=|.|||.+..+.+...+... +.+|+|.+|...-++++++.+...
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~----------Gi~IlvTAH~~~ts~evF~rv~~~ 239 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISFL----------EIDIVVQAQRKTMCLTLYNRVETV 239 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHhc----------CCeEEEECCChhhHHHHHHHHHHH
Confidence 34444444444432 223467789999999998877666544311 348999999999999999998888
Q ss_pred hccCCc--------EEEEEeCCCc-----cChhhh-ccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCC
Q 000129 574 LQMYDV--------KVRELSGDQT-----LTRQQI-EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNR 639 (2114)
Q Consensus 574 ~~~~gi--------~v~~l~Gd~~-----~~~~~~-~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~r 639 (2114)
+..+|. ++....|+.. ...... ..+.|.+++-. . +...-..++++|+|||+.+.+
T Consensus 240 le~lg~~~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars--------~-~s~RG~~~DLLIVDEAAfI~~-- 308 (752)
T PHA03333 240 VHAYQHKPWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASS--------P-NAARGQNPDLVIVDEAAFVNP-- 308 (752)
T ss_pred HHHhccccccCCCceEEEeeCCeeEEEEecCcccccCcceeEEeccc--------C-CCcCCCCCCEEEEECcccCCH--
Confidence 764331 1222223211 000000 11223332211 1 111113568999999999874
Q ss_pred chhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHh
Q 000129 640 GPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLR 681 (2114)
Q Consensus 640 g~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~ 681 (2114)
+.++.++--+ . ..+.+++.+|.+- .....-.+|.
T Consensus 309 -~~l~aIlP~l----~--~~~~k~IiISS~~-~~~s~tS~L~ 342 (752)
T PHA03333 309 -GALLSVLPLM----A--VKGTKQIHISSPV-DADSWISRVG 342 (752)
T ss_pred -HHHHHHHHHH----c--cCCCceEEEeCCC-CcchHHHHhh
Confidence 4455544332 2 2467778888773 2333344443
No 425
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.21 E-value=0.54 Score=62.99 Aligned_cols=145 Identities=19% Similarity=0.260 Sum_probs=91.4
Q ss_pred CCHHHHHHHHHHHcCCC-cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 496 LNRVQSRVYKSALSSAD-NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 496 l~~iQ~~~i~~~l~~~~-nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
...-|.+.+..++..+. -+++.|.=|=|||.+.-+++. .+.... ....+++.+|+++-++..++-..+.+
T Consensus 215 dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~-~~~~~~--------~~~~iiVTAP~~~nv~~Lf~fa~~~l 285 (758)
T COG1444 215 DQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALA-AAARLA--------GSVRIIVTAPTPANVQTLFEFAGKGL 285 (758)
T ss_pred hHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHH-HHHHhc--------CCceEEEeCCCHHHHHHHHHHHHHhH
Confidence 33444445666676655 788999999999999887773 333221 13489999999999999988888877
Q ss_pred ccCCcEEEEEeCC-CccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHH
Q 000129 575 QMYDVKVRELSGD-QTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQ 653 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd-~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~ 653 (2114)
..+|.+-...... .......-....|=+-+|.. .. ..-+++|||||=.++ -|.++.++.+
T Consensus 286 ~~lg~~~~v~~d~~g~~~~~~~~~~~i~y~~P~~-----------a~-~~~DllvVDEAAaIp---lplL~~l~~~---- 346 (758)
T COG1444 286 EFLGYKRKVAPDALGEIREVSGDGFRIEYVPPDD-----------AQ-EEADLLVVDEAAAIP---LPLLHKLLRR---- 346 (758)
T ss_pred HHhCCccccccccccceeeecCCceeEEeeCcch-----------hc-ccCCEEEEehhhcCC---hHHHHHHHhh----
Confidence 7776553222211 11111111233466677763 11 115899999998775 3444444332
Q ss_pred HhhccccccEEEEccccCChHH
Q 000129 654 IETTKEHIRLVGLSATLPNYED 675 (2114)
Q Consensus 654 ~~~~~~~~riv~lSATlpn~~d 675 (2114)
.+.++||.|+..|+-
T Consensus 347 -------~~rv~~sTTIhGYEG 361 (758)
T COG1444 347 -------FPRVLFSTTIHGYEG 361 (758)
T ss_pred -------cCceEEEeeeccccc
Confidence 345999999987654
No 426
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.20 E-value=0.45 Score=63.87 Aligned_cols=38 Identities=16% Similarity=0.242 Sum_probs=23.8
Q ss_pred cE-EEEecCCCchHHHHHHHHHHHhhhccCC---CceEEEEEc
Q 000129 1359 NV-LVAAPTGSGKTICSEFAILRNHQKASET---GVMRAVYIA 1397 (2114)
Q Consensus 1359 nv-li~ApTGSGKTl~~~l~il~~l~~~~~~---~~~k~l~I~ 1397 (2114)
++ +|.|+||+|||++.-. +++.+...... ..+.++||-
T Consensus 782 nvLYIyG~PGTGKTATVK~-VLrELqeeaeqk~lp~f~vVYIN 823 (1164)
T PTZ00112 782 QILYISGMPGTGKTATVYS-VIQLLQHKTKQKLLPSFNVFEIN 823 (1164)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHHHHHHhhccCCCceEEEEe
Confidence 45 5999999999998754 44555432111 124667774
No 427
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.18 E-value=0.63 Score=57.96 Aligned_cols=130 Identities=15% Similarity=0.175 Sum_probs=75.7
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcc-cHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhh
Q 000129 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP-LEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKL 1435 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~P-tr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~ 1435 (2114)
+..+.+.||||.|||+...=...+...... ... -+++..- .|.=|.++.+.+. +.+|+.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~-~~k-VaiITtDtYRIGA~EQLk~Ya----~im~vp~------------- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKK-KKK-VAIITTDTYRIGAVEQLKTYA----DIMGVPL------------- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhcc-Ccc-eEEEEeccchhhHHHHHHHHH----HHhCCce-------------
Confidence 677999999999999764332233332211 221 3444443 3655666555444 3334444
Q ss_pred ccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCChh
Q 000129 1436 LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAK 1515 (2114)
Q Consensus 1436 l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~ 1515 (2114)
.++-+|.-|...+.. +++.++|.||=+-+= +.=...++.|+.+......--..+.+|||. ..+
T Consensus 264 -----~vv~~~~el~~ai~~------l~~~d~ILVDTaGrs-----~~D~~~i~el~~~~~~~~~i~~~Lvlsat~-K~~ 326 (407)
T COG1419 264 -----EVVYSPKELAEAIEA------LRDCDVILVDTAGRS-----QYDKEKIEELKELIDVSHSIEVYLVLSATT-KYE 326 (407)
T ss_pred -----EEecCHHHHHHHHHH------hhcCCEEEEeCCCCC-----ccCHHHHHHHHHHHhccccceEEEEEecCc-chH
Confidence 345566666554443 556688888866532 222336777777766554556678899996 666
Q ss_pred HHHHHhc
Q 000129 1516 DLGEWIG 1522 (2114)
Q Consensus 1516 dla~wl~ 1522 (2114)
|+.+-+.
T Consensus 327 dlkei~~ 333 (407)
T COG1419 327 DLKEIIK 333 (407)
T ss_pred HHHHHHH
Confidence 6666553
No 428
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.16 E-value=0.6 Score=58.18 Aligned_cols=129 Identities=20% Similarity=0.222 Sum_probs=66.9
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEE-c-ccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchh
Q 000129 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYI-A-PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK 1434 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I-~-Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~ 1434 (2114)
...+.++||||+|||+.+...... +.. .+. ++.++ + |.|.-+.++...|.+. .|+.+.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~-L~~--~Gk--kVglI~aDt~RiaAvEQLk~yae~----lgipv~----------- 300 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQ-FHG--KKK--TVGFITTDHSRIGTVQQLQDYVKT----IGFEVI----------- 300 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHH-HHH--cCC--cEEEEecCCcchHHHHHHHHHhhh----cCCcEE-----------
Confidence 356899999999999876444333 322 122 44333 3 4454444444444422 233321
Q ss_pred hccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCCh
Q 000129 1435 LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA 1514 (2114)
Q Consensus 1435 ~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~ 1514 (2114)
.+.+|..+...+..... -.+.++|+||-+=+...+ ...+..+..+.....+...++.+|||.. .
T Consensus 301 -------v~~d~~~L~~aL~~lk~---~~~~DvVLIDTaGRs~kd-----~~lm~EL~~~lk~~~PdevlLVLsATtk-~ 364 (436)
T PRK11889 301 -------AVRDEAAMTRALTYFKE---EARVDYILIDTAGKNYRA-----SETVEEMIETMGQVEPDYICLTLSASMK-S 364 (436)
T ss_pred -------ecCCHHHHHHHHHHHHh---ccCCCEEEEeCccccCcC-----HHHHHHHHHHHhhcCCCeEEEEECCccC-h
Confidence 23356665544443221 125789999988654322 1234444444443333444566999864 3
Q ss_pred hHHHHHh
Q 000129 1515 KDLGEWI 1521 (2114)
Q Consensus 1515 ~dla~wl 1521 (2114)
.++.+.+
T Consensus 365 ~d~~~i~ 371 (436)
T PRK11889 365 KDMIEII 371 (436)
T ss_pred HHHHHHH
Confidence 3443333
No 429
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.13 E-value=0.31 Score=63.30 Aligned_cols=109 Identities=13% Similarity=0.181 Sum_probs=63.2
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhhcc
Q 000129 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLE 1437 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~l~ 1437 (2114)
..+++.|++|+|||... .++.+.+....++. +++|+.+ .++..+....+.. . .
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~~~~--~v~yv~~-~~f~~~~~~~l~~----~--~----------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNFSDL--KVSYMSG-DEFARKAVDILQK----T--H----------------- 194 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhCCCC--eEEEEEH-HHHHHHHHHHHHH----h--h-----------------
Confidence 35899999999999765 56666665533333 7787766 4555555444331 0 0
Q ss_pred CCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCC
Q 000129 1438 KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512 (2114)
Q Consensus 1438 ~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~ 1512 (2114)
+.+..+..+ +.+++++|+||+|.+.... ...+.+..-+..+.. ...++|+.|-..|
T Consensus 195 ---------~~~~~~~~~------~~~~dvLiIDDiq~l~~k~-~~~e~lf~l~N~~~~---~~k~iIltsd~~P 250 (450)
T PRK14087 195 ---------KEIEQFKNE------ICQNDVLIIDDVQFLSYKE-KTNEIFFTIFNNFIE---NDKQLFFSSDKSP 250 (450)
T ss_pred ---------hHHHHHHHH------hccCCEEEEeccccccCCH-HHHHHHHHHHHHHHH---cCCcEEEECCCCH
Confidence 111112222 4567899999999885422 234555555554432 3446666655443
No 430
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=94.08 E-value=0.19 Score=67.19 Aligned_cols=122 Identities=21% Similarity=0.290 Sum_probs=80.5
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000129 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2114)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (2114)
...||.-|++|+..++...+-.||.|=+|+|||......|--.+.. +.+|+..+=|.+-+.-+.-+++.
T Consensus 667 ~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~-----------gkkVLLtsyThsAVDNILiKL~~ 735 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVAL-----------GKKVLLTSYTHSAVDNILIKLKG 735 (1100)
T ss_pred HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHc-----------CCeEEEEehhhHHHHHHHHHHhc
Confidence 3489999999999999998889999999999998765443322222 34899999998887777666554
Q ss_pred hhccCCcEEEEEeCCCccCh--------------------hhhccceEEEcCHhHH-HHHHhccCCCcccccccEEEEec
Q 000129 573 RLQMYDVKVRELSGDQTLTR--------------------QQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDE 631 (2114)
Q Consensus 573 ~~~~~gi~v~~l~Gd~~~~~--------------------~~~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDE 631 (2114)
.++....+..+....+ ...+.+.|+.||==-+ +.+ ...+.+++.||||
T Consensus 736 ----~~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl-------f~~R~FD~cIiDE 804 (1100)
T KOG1805|consen 736 ----FGIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL-------FVNRQFDYCIIDE 804 (1100)
T ss_pred ----cCcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh-------hhccccCEEEEcc
Confidence 3554443333222111 1235677888873211 111 1224589999999
Q ss_pred ccccc
Q 000129 632 IHLLH 636 (2114)
Q Consensus 632 aH~l~ 636 (2114)
|-.++
T Consensus 805 ASQI~ 809 (1100)
T KOG1805|consen 805 ASQIL 809 (1100)
T ss_pred ccccc
Confidence 98764
No 431
>PRK04296 thymidine kinase; Provisional
Probab=94.07 E-value=0.085 Score=60.39 Aligned_cols=35 Identities=11% Similarity=0.101 Sum_probs=24.5
Q ss_pred cEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcc
Q 000129 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP 1398 (2114)
Q Consensus 1359 nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~P 1398 (2114)
-.++.||+|+|||+.+.-.+.+.... +. +++++-|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~---g~--~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEER---GM--KVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHc---CC--eEEEEec
Confidence 36889999999998775555444333 33 7787766
No 432
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=94.07 E-value=0.15 Score=61.48 Aligned_cols=144 Identities=19% Similarity=0.240 Sum_probs=82.5
Q ss_pred cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEE-cCCcccc-
Q 000129 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVEL-TGETAMD- 1432 (2114)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l-~G~~~~~- 1432 (2114)
..++-++|+|+||.|||..+.-.+.+.+... +. .++|+..-- -..+++.++-..... +....+ .|....+
T Consensus 17 ~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~--~~--~vly~SlEm-~~~~l~~R~la~~s~---v~~~~i~~g~l~~~e 88 (259)
T PF03796_consen 17 RPGELTVIAARPGVGKTAFALQIALNAALNG--GY--PVLYFSLEM-SEEELAARLLARLSG---VPYNKIRSGDLSDEE 88 (259)
T ss_dssp -TT-EEEEEESTTSSHHHHHHHHHHHHHHTT--SS--EEEEEESSS--HHHHHHHHHHHHHT---STHHHHHCCGCHHHH
T ss_pred CcCcEEEEEecccCCchHHHHHHHHHHHHhc--CC--eEEEEcCCC-CHHHHHHHHHHHhhc---chhhhhhccccCHHH
Confidence 3456789999999999998877777666551 23 788886531 122333333333322 211111 1222211
Q ss_pred -------hhhccCCcEEE-E----ChhhHHHHHhhhcccccccceeEEEecccccccCC-----CCchHHHHHHHHHHHH
Q 000129 1433 -------LKLLEKGQIII-S----TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-----GGPVLEVIVSRMRYIA 1495 (2114)
Q Consensus 1433 -------~~~l~~~~IIV-~----TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~-----~g~~le~i~srl~~i~ 1495 (2114)
...+....+.| . |++.+....++++.. ...+++||||=+|.+... ....+..+..+++.+.
T Consensus 89 ~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~--~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA 166 (259)
T PF03796_consen 89 FERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKRE--GKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALA 166 (259)
T ss_dssp HHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHH--STTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhh--ccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 11233444443 3 444555566654433 278999999999998763 2233456677788877
Q ss_pred hhcCCCceEEEEccc
Q 000129 1496 SQVENKIRIVALSTS 1510 (2114)
Q Consensus 1496 ~~~~~~~riV~lSAT 1510 (2114)
..+ ++.+|++|..
T Consensus 167 ~~~--~i~vi~~sQl 179 (259)
T PF03796_consen 167 KEL--NIPVIALSQL 179 (259)
T ss_dssp HHH--TSEEEEEEEB
T ss_pred HHc--CCeEEEcccc
Confidence 654 6888888765
No 433
>PRK14974 cell division protein FtsY; Provisional
Probab=94.05 E-value=0.29 Score=60.67 Aligned_cols=123 Identities=15% Similarity=0.161 Sum_probs=67.4
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcc--cHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhh
Q 000129 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP--LEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKL 1435 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~P--tr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~ 1435 (2114)
..+++.||+|+|||+...-.+ ..+.. .+. +++++.. .|.-+.++.+.+...+ |+.+.. +....+
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA-~~l~~--~g~--~V~li~~Dt~R~~a~eqL~~~a~~l----gv~v~~--~~~g~d--- 206 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLA-YYLKK--NGF--SVVIAAGDTFRAGAIEQLEEHAERL----GVKVIK--HKYGAD--- 206 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHH-HHHHH--cCC--eEEEecCCcCcHHHHHHHHHHHHHc----CCceec--ccCCCC---
Confidence 457889999999998654333 23333 222 6665543 3455555455555443 444321 111111
Q ss_pred ccCCcEEEEChhh-HHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCC
Q 000129 1436 LEKGQIIISTPEK-WDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (2114)
Q Consensus 1436 l~~~~IIV~TPe~-l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n 1513 (2114)
|.. +...++.. ...+.++||||.++++..+. .++..++.+.....+...++.++||..+
T Consensus 207 ----------p~~v~~~ai~~~----~~~~~DvVLIDTaGr~~~~~-----~lm~eL~~i~~~~~pd~~iLVl~a~~g~ 266 (336)
T PRK14974 207 ----------PAAVAYDAIEHA----KARGIDVVLIDTAGRMHTDA-----NLMDELKKIVRVTKPDLVIFVGDALAGN 266 (336)
T ss_pred ----------HHHHHHHHHHHH----HhCCCCEEEEECCCccCCcH-----HHHHHHHHHHHhhCCceEEEeeccccch
Confidence 111 11111111 12356899999999875322 2556666665555667778889998764
No 434
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.04 E-value=0.73 Score=57.50 Aligned_cols=128 Identities=16% Similarity=0.167 Sum_probs=65.5
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEE-c-ccHHHHHHHHHHHHHhhccCCcEEEEEeCCCc
Q 000129 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYV-A-PMKALVAEVVGNLSNRLQMYDVKVRELSGDQT 589 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~i-a-P~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~ 589 (2114)
..+.++||||+|||..+.......... +.++.++ + |.|.-+.++...+.+. .|+.+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~-----------GkkVglI~aDt~RiaAvEQLk~yae~---lgipv~------- 300 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGK-----------KKTVGFITTDHSRIGTVQQLQDYVKT---IGFEVI------- 300 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHc-----------CCcEEEEecCCcchHHHHHHHHHhhh---cCCcEE-------
Confidence 468899999999998765544433222 1234333 3 4554455554444442 233222
Q ss_pred cChhhhccceEEEcCHhHH-HHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEcc
Q 000129 590 LTRQQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSA 668 (2114)
Q Consensus 590 ~~~~~~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSA 668 (2114)
.+.+|..+ +.+..... ..++++|+||-+=+.+.. ...+..+.+.+....+...++.+||
T Consensus 301 -----------v~~d~~~L~~aL~~lk~----~~~~DvVLIDTaGRs~kd-----~~lm~EL~~~lk~~~PdevlLVLsA 360 (436)
T PRK11889 301 -----------AVRDEAAMTRALTYFKE----EARVDYILIDTAGKNYRA-----SETVEEMIETMGQVEPDYICLTLSA 360 (436)
T ss_pred -----------ecCCHHHHHHHHHHHHh----ccCCCEEEEeCccccCcC-----HHHHHHHHHHHhhcCCCeEEEEECC
Confidence 23356655 23322111 124789999988654321 1223333333333334444666999
Q ss_pred ccCChHHHHHHHh
Q 000129 669 TLPNYEDVALFLR 681 (2114)
Q Consensus 669 Tlpn~~dva~~l~ 681 (2114)
|.. ..++...+.
T Consensus 361 Ttk-~~d~~~i~~ 372 (436)
T PRK11889 361 SMK-SKDMIEIIT 372 (436)
T ss_pred ccC-hHHHHHHHH
Confidence 854 355555543
No 435
>PRK11054 helD DNA helicase IV; Provisional
Probab=93.98 E-value=0.15 Score=69.15 Aligned_cols=97 Identities=21% Similarity=0.231 Sum_probs=67.7
Q ss_pred HHHHhcCC--CCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc-CCCceEEEEEcccHHHHHHHHH
Q 000129 1332 YEALYQGF--KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAKERYR 1408 (2114)
Q Consensus 1332 ~~~l~~gf--~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~-~~~~~k~l~I~Ptr~La~q~~~ 1408 (2114)
+..+|..+ ..+|+-|.+|+. .+.++++|.|..|||||.+..--+...+.... ... ++++++.++..|.++.+
T Consensus 185 ~~~~f~~~e~~~L~~~Q~~av~---~~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~--~IL~ltft~~AA~em~e 259 (684)
T PRK11054 185 YADFFSQVESSPLNPSQARAVV---NGEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPE--QILLLAFGRQAAEEMDE 259 (684)
T ss_pred HHHHHHhccCCCCCHHHHHHHh---CCCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHH--HeEEEeccHHHHHHHHH
Confidence 44555432 479999999886 34567899999999999887555444443321 222 89999999999999998
Q ss_pred HHHHHhcCCCCcEEEEEcCCcccchhhccCCcEEEEChhhHH-HHHhh
Q 000129 1409 DWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWD-ALSRR 1455 (2114)
Q Consensus 1409 ~~~~~f~~~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~-~l~r~ 1455 (2114)
++..+++ ...|-|+|--.|. .+++.
T Consensus 260 RL~~~lg----------------------~~~v~v~TFHSlal~Il~~ 285 (684)
T PRK11054 260 RIRERLG----------------------TEDITARTFHALALHIIQQ 285 (684)
T ss_pred HHHHhcC----------------------CCCcEEEeHHHHHHHHHHH
Confidence 8875542 0247788877764 34554
No 436
>PRK08116 hypothetical protein; Validated
Probab=93.96 E-value=0.42 Score=57.79 Aligned_cols=44 Identities=16% Similarity=0.226 Sum_probs=29.3
Q ss_pred cEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHH
Q 000129 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYR 1408 (2114)
Q Consensus 1359 nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~ 1408 (2114)
.+++.|++|+|||..+ .++.+.+... +. .++|+ +..+++..+..
T Consensus 116 gl~l~G~~GtGKThLa-~aia~~l~~~--~~--~v~~~-~~~~ll~~i~~ 159 (268)
T PRK08116 116 GLLLWGSVGTGKTYLA-ACIANELIEK--GV--PVIFV-NFPQLLNRIKS 159 (268)
T ss_pred eEEEECCCCCCHHHHH-HHHHHHHHHc--CC--eEEEE-EHHHHHHHHHH
Confidence 3999999999999887 4677777662 22 55554 44555554433
No 437
>PRK14974 cell division protein FtsY; Provisional
Probab=93.94 E-value=0.49 Score=58.69 Aligned_cols=122 Identities=20% Similarity=0.267 Sum_probs=63.9
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc--cHHHHHHHHHHHHHhhccCCcEEEEEeCCCc
Q 000129 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP--MKALVAEVVGNLSNRLQMYDVKVRELSGDQT 589 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP--~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~ 589 (2114)
.-++++||+|+|||.+..-.+. .+... +.+++++.. .|+-+.++.+.+... +|+.+... ...
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~-~l~~~----------g~~V~li~~Dt~R~~a~eqL~~~a~~---lgv~v~~~--~~g 204 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAY-YLKKN----------GFSVVIAAGDTFRAGAIEQLEEHAER---LGVKVIKH--KYG 204 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHH-HHHHc----------CCeEEEecCCcCcHHHHHHHHHHHHH---cCCceecc--cCC
Confidence 3478999999999986544332 33322 235666653 345555555554443 35544321 111
Q ss_pred cChhhhccceEEEcCHhH--HHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEc
Q 000129 590 LTRQQIEETQIIVTTPEK--WDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (2114)
Q Consensus 590 ~~~~~~~~~~IiV~TPek--~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lS 667 (2114)
. .|.. ++.+... .....++|+||.+++++... .++..+....+...+...++.++
T Consensus 205 ~-------------dp~~v~~~ai~~~-----~~~~~DvVLIDTaGr~~~~~-----~lm~eL~~i~~~~~pd~~iLVl~ 261 (336)
T PRK14974 205 A-------------DPAAVAYDAIEHA-----KARGIDVVLIDTAGRMHTDA-----NLMDELKKIVRVTKPDLVIFVGD 261 (336)
T ss_pred C-------------CHHHHHHHHHHHH-----HhCCCCEEEEECCCccCCcH-----HHHHHHHHHHHhhCCceEEEeec
Confidence 1 1111 1222211 11346899999999876321 12222222233345667788899
Q ss_pred cccCC
Q 000129 668 ATLPN 672 (2114)
Q Consensus 668 ATlpn 672 (2114)
||..+
T Consensus 262 a~~g~ 266 (336)
T PRK14974 262 ALAGN 266 (336)
T ss_pred cccch
Confidence 98754
No 438
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=93.91 E-value=0.2 Score=59.95 Aligned_cols=52 Identities=23% Similarity=0.365 Sum_probs=39.1
Q ss_pred HcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHH
Q 000129 1354 YNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2114)
Q Consensus 1354 l~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~ 1411 (2114)
+..+.|+++.||+|+|||..+ .||.+.+.. .| .-++.+++.+|+.++...+.
T Consensus 102 ~~~~~nl~l~G~~G~GKThLa-~Ai~~~l~~---~g--~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 102 FERGENLVLLGPPGVGKTHLA-IAIGNELLK---AG--ISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred hccCCcEEEECCCCCcHHHHH-HHHHHHHHH---cC--CeEEEEEHHHHHHHHHHHHh
Confidence 456789999999999999887 455555554 34 55777888888888776555
No 439
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=93.88 E-value=0.092 Score=71.77 Aligned_cols=109 Identities=20% Similarity=0.178 Sum_probs=72.5
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhc-cCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA-SETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~-~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g 1419 (2114)
.+|+-|.+|+.. ...+++|.|..|||||.+...-+...+... -+.. ++++|+.|+..|.++..++.+.++..
T Consensus 2 ~Ln~~Q~~av~~---~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~--~IL~lTFT~kAA~em~~Rl~~~l~~~-- 74 (672)
T PRK10919 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQAR--HIAAVTFTNKAAREMKERVAQTLGRK-- 74 (672)
T ss_pred CCCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHH--HeeeEechHHHHHHHHHHHHHHhCcc--
Confidence 489999999864 356699999999999998877666666432 2233 89999999999999988887554321
Q ss_pred cEEEEEcCCcccchhhccCCcEEEEChhhHH-HHHhhhcccccccceeEEEecccc
Q 000129 1420 MRVVELTGETAMDLKLLEKGQIIISTPEKWD-ALSRRWKQRKYVQQVSLFIIDELH 1474 (2114)
Q Consensus 1420 ~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~-~l~r~~~~~~~l~~v~liIiDEaH 1474 (2114)
....+-|+|...|. .++++......+ .-++-|+|+.+
T Consensus 75 -----------------~~~~v~i~TfHS~~~~iLr~~~~~~g~-~~~~~i~d~~~ 112 (672)
T PRK10919 75 -----------------EARGLMISTFHTLGLDIIKREYAALGM-KSNFSLFDDTD 112 (672)
T ss_pred -----------------cccCcEEEcHHHHHHHHHHHHHHHhCC-CCCCeeCCHHH
Confidence 01247788887764 345442111111 12345667665
No 440
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.86 E-value=0.13 Score=63.52 Aligned_cols=61 Identities=25% Similarity=0.240 Sum_probs=46.2
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHH
Q 000129 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEAL 1402 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~L 1402 (2114)
...+++.|.+.+..+...+.|++|+|+||||||... -+++..+....+.. ++++|-.+.||
T Consensus 130 ~g~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~aL~~~~~~~~~~~--rivtIEd~~El 190 (319)
T PRK13894 130 RGIMTAAQREAIIAAVRAHRNILVIGGTGSGKTTLV-NAIINEMVIQDPTE--RVFIIEDTGEI 190 (319)
T ss_pred cCCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHhhhhcCCCc--eEEEEcCCCcc
Confidence 345788999999988888999999999999999654 55665543222333 88888888876
No 441
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=93.83 E-value=0.17 Score=60.82 Aligned_cols=121 Identities=19% Similarity=0.154 Sum_probs=63.1
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccC
Q 000129 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLT 591 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~ 591 (2114)
.|++++|+||-|||.+.. +....|....+.-...-+-+++-+|..+=....+..+-..+ |..... .+
T Consensus 62 p~lLivG~snnGKT~Ii~----rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l---gaP~~~--~~---- 128 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIE----RFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL---GAPYRP--RD---- 128 (302)
T ss_pred CceEEecCCCCcHHHHHH----HHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh---CcccCC--CC----
Confidence 489999999999998642 22223322111101112345555777776666666554433 221110 00
Q ss_pred hhhhccceEEEcCHhHH----HHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEE
Q 000129 592 RQQIEETQIIVTTPEKW----DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGL 666 (2114)
Q Consensus 592 ~~~~~~~~IiV~TPek~----d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~l 666 (2114)
+..+. ..+.+.. .++++||||+|.+..+....-..++.-+..... .-.+.+|++
T Consensus 129 ------------~~~~~~~~~~~llr~~-------~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~N--eL~ipiV~v 186 (302)
T PF05621_consen 129 ------------RVAKLEQQVLRLLRRL-------GVRMLIIDEFHNLLAGSYRKQREFLNALKFLGN--ELQIPIVGV 186 (302)
T ss_pred ------------CHHHHHHHHHHHHHHc-------CCcEEEeechHHHhcccHHHHHHHHHHHHHHhh--ccCCCeEEe
Confidence 11111 1233332 479999999999876554444555554433322 335566655
No 442
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=93.78 E-value=0.027 Score=62.73 Aligned_cols=130 Identities=20% Similarity=0.273 Sum_probs=56.6
Q ss_pred EEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh
Q 000129 515 LLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ 594 (2114)
Q Consensus 515 lv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~ 594 (2114)
++.|+-|-|||.+.-+++...+..+ ..++++.+|..+-++..++.+...+..+|.+............-.
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~----------~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~~~~~~~~ 70 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKG----------KIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRIGQIIKLR 70 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS---------------EEEE-SS--S-HHHHHCC------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhc----------CceEEEecCCHHHHHHHHHHHHhhccccccccccccccccccccc
Confidence 5789999999988766654443322 247999999999888888777665555544431100000000001
Q ss_pred hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEccccCChH
Q 000129 595 IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYE 674 (2114)
Q Consensus 595 ~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~ 674 (2114)
.....|-+..|+. +... -...+++|||||=.+. -+.+ .++ -.....+.||.|+..||
T Consensus 71 ~~~~~i~f~~Pd~---l~~~------~~~~DlliVDEAAaIp---~p~L----~~l-------l~~~~~vv~stTi~GYE 127 (177)
T PF05127_consen 71 FNKQRIEFVAPDE---LLAE------KPQADLLIVDEAAAIP---LPLL----KQL-------LRRFPRVVFSTTIHGYE 127 (177)
T ss_dssp --CCC--B--HHH---HCCT----------SCEEECTGGGS----HHHH----HHH-------HCCSSEEEEEEEBSSTT
T ss_pred cccceEEEECCHH---HHhC------cCCCCEEEEechhcCC---HHHH----HHH-------HhhCCEEEEEeeccccc
Confidence 1245677777774 2211 1234899999998764 1122 222 22344578889988776
Q ss_pred HHH
Q 000129 675 DVA 677 (2114)
Q Consensus 675 dva 677 (2114)
--.
T Consensus 128 GtG 130 (177)
T PF05127_consen 128 GTG 130 (177)
T ss_dssp BB-
T ss_pred cCC
Confidence 543
No 443
>CHL00181 cbbX CbbX; Provisional
Probab=93.75 E-value=0.46 Score=58.02 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=17.5
Q ss_pred CcEEEEccCCCchHHHHHHHH
Q 000129 512 DNILLCAPTGAGKTNVAVLTI 532 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~i 532 (2114)
-++++.||+|+|||.+|-...
T Consensus 60 ~~ill~G~pGtGKT~lAr~la 80 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMA 80 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 368999999999999986543
No 444
>PRK08084 DNA replication initiation factor; Provisional
Probab=93.73 E-value=0.52 Score=55.94 Aligned_cols=52 Identities=10% Similarity=0.064 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHc--CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcc
Q 000129 1342 FNPIQTQVFTVLYN--TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP 1398 (2114)
Q Consensus 1342 ~~~iQ~q~~~~il~--~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~P 1398 (2114)
.|.....++..+.. +..+++++||+|+|||..+. ++.+.+.. .+. +++|+.-
T Consensus 28 ~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~-a~~~~~~~--~~~--~v~y~~~ 81 (235)
T PRK08084 28 DNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLH-AACAELSQ--RGR--AVGYVPL 81 (235)
T ss_pred ccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHH-HHHHHHHh--CCC--eEEEEEH
Confidence 34444445554432 33579999999999997764 34444433 122 6677644
No 445
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.67 E-value=0.33 Score=57.70 Aligned_cols=50 Identities=26% Similarity=0.367 Sum_probs=36.7
Q ss_pred CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHH
Q 000129 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~ 1411 (2114)
.+..++|.||+|||||+.+...+.+.+.. +. +++|++ +.+-..++.+++.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~---ge--~~lyvs-~ee~~~~i~~~~~ 69 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM---GE--PGIYVA-LEEHPVQVRRNMA 69 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc---CC--cEEEEE-eeCCHHHHHHHHH
Confidence 36779999999999999887777776644 33 788887 4455566666554
No 446
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=93.63 E-value=0.081 Score=56.32 Aligned_cols=44 Identities=25% Similarity=0.369 Sum_probs=27.8
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHH
Q 000129 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE 565 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q 565 (2114)
..+++++||+|+|||..+...+.. +... ...++++.+.......
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~-~~~~----------~~~~~~~~~~~~~~~~ 45 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARE-LGPP----------GGGVIYIDGEDILEEV 45 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhc-cCCC----------CCCEEEECCEEccccC
Confidence 356999999999999876543322 2111 1247778777665433
No 447
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=93.59 E-value=0.13 Score=71.15 Aligned_cols=109 Identities=24% Similarity=0.245 Sum_probs=74.0
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHh
Q 000129 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~ 573 (2114)
..||+-|.+++.. ...+++|.|..|||||.+..--+.+.+.... .+.-+|++|+-|+..|.++.+++.++
T Consensus 8 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~-------v~p~~IL~lTFT~kAA~Em~~Rl~~~ 77 (721)
T PRK11773 8 DSLNDKQREAVAA---PLGNMLVLAGAGSGKTRVLVHRIAWLMQVEN-------ASPYSIMAVTFTNKAAAEMRHRIEQL 77 (721)
T ss_pred HhcCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHcCC-------CChhHeEeeeccHHHHHHHHHHHHHH
Confidence 4699999999863 3457999999999999987766666654321 12347999999999999999999886
Q ss_pred hccCCcEEEEEeCCCccChhhhccceEEEcCHhHH-HHHHhccCC-CcccccccEEEEeccc
Q 000129 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKSGD-RTYTQLVKLLIIDEIH 633 (2114)
Q Consensus 574 ~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~-d~l~r~~~~-~~~l~~v~liIiDEaH 633 (2114)
++. . ...+.|+|-..| ..+.|.... ..+-. ++-|+|+.+
T Consensus 78 ~~~----------~---------~~~~~i~TfHs~~~~iLr~~~~~~g~~~--~f~i~d~~d 118 (721)
T PRK11773 78 LGT----------S---------QGGMWVGTFHGLAHRLLRAHWQDANLPQ--DFQILDSDD 118 (721)
T ss_pred hcc----------C---------CCCCEEEcHHHHHHHHHHHHHHHhCCCC--CCeecCHHH
Confidence 531 0 124678998886 334443211 11111 245777765
No 448
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=93.57 E-value=0.2 Score=60.71 Aligned_cols=59 Identities=22% Similarity=0.230 Sum_probs=46.5
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHH
Q 000129 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La 1403 (2114)
|..+++-|...+..+.....|+||+|.||||||+.. -++. .+.. +.. |+|+|--|.||-
T Consensus 155 ~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlL-Nal~-~~i~--~~e--RvItiEDtaELq 213 (355)
T COG4962 155 FGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLL-NALS-GFID--SDE--RVITIEDTAELQ 213 (355)
T ss_pred cCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHH-HHHH-hcCC--Ccc--cEEEEeehhhhc
Confidence 889999999999999998999999999999999753 2222 2211 233 899999988883
No 449
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=93.53 E-value=0.31 Score=62.69 Aligned_cols=137 Identities=13% Similarity=0.226 Sum_probs=82.5
Q ss_pred EEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHH-HHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhhcc-
Q 000129 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEA-LAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLE- 1437 (2114)
Q Consensus 1360 vli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~-La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~l~- 1437 (2114)
.++.|..|||||.+..+.++..+....++. +++|+-|+.. |-..++..+...+... |+....-..+.+.......
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~--~~~~~r~~~~sl~~sv~~~l~~~i~~~-g~~~~~~~~~~~~~i~~~~~ 80 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINKKQQ--NILAARKVQNSIRDSVFKDIENLLSIE-GINYEFKKSKSSMEIKILNT 80 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcCCCc--EEEEEehhhhHHHHHHHHHHHHHHHHc-CChhheeecCCccEEEecCC
Confidence 678899999999998888887777631334 8999999977 7777788887655543 4332111111211111112
Q ss_pred CCcEEEECh-hhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCCh
Q 000129 1438 KGQIIISTP-EKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA 1514 (2114)
Q Consensus 1438 ~~~IIV~TP-e~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~ 1514 (2114)
...|++..- +....+ .....+.++.+|||..+.. ..++.++.|++. +...+.|.+|.++...
T Consensus 81 g~~i~f~g~~d~~~~i-------k~~~~~~~~~idEa~~~~~---~~~~~l~~rlr~-----~~~~~~i~~t~NP~~~ 143 (396)
T TIGR01547 81 GKKFIFKGLNDKPNKL-------KSGAGIAIIWFEEASQLTF---EDIKELIPRLRE-----TGGKKFIIFSSNPESP 143 (396)
T ss_pred CeEEEeecccCChhHh-------hCcceeeeehhhhhhhcCH---HHHHHHHHHhhc-----cCCccEEEEEcCcCCC
Confidence 234666553 222211 1234479999999998842 367777777543 1122247778877653
No 450
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.51 E-value=0.86 Score=58.69 Aligned_cols=125 Identities=17% Similarity=0.211 Sum_probs=65.2
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHh-hhccCCCceEEEEE-c-ccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccch
Q 000129 1357 DDNVLVAAPTGSGKTICSEFAILRNH-QKASETGVMRAVYI-A-PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL 1433 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l~il~~l-~~~~~~~~~k~l~I-~-Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~ 1433 (2114)
+..+++.||||+|||+...-.+.... .. .+. ++.+| + |.|.-+.++...|.+.+ |+.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~--~g~--~V~li~~D~~r~~a~eqL~~~a~~~----~vp~~---------- 282 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY--GKK--KVALITLDTYRIGAVEQLKTYAKIM----GIPVE---------- 282 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc--CCC--eEEEEECCccHHHHHHHHHHHHHHh----CCceE----------
Confidence 45789999999999977643333222 12 122 44433 2 44555555566665432 33221
Q ss_pred hhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhc-CCCceEEEEcccCC
Q 000129 1434 KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQV-ENKIRIVALSTSLA 1512 (2114)
Q Consensus 1434 ~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~-~~~~riV~lSATl~ 1512 (2114)
.+.+|..+...++. +.+.++||||-+-....+. ..+..+..+.... .....++.+|||..
T Consensus 283 --------~~~~~~~l~~~l~~------~~~~DlVlIDt~G~~~~d~-----~~~~~L~~ll~~~~~~~~~~LVl~a~~~ 343 (424)
T PRK05703 283 --------VVYDPKELAKALEQ------LRDCDVILIDTAGRSQRDK-----RLIEELKALIEFSGEPIDVYLVLSATTK 343 (424)
T ss_pred --------ccCCHHhHHHHHHH------hCCCCEEEEeCCCCCCCCH-----HHHHHHHHHHhccCCCCeEEEEEECCCC
Confidence 12344444444443 3357999999986543221 1233333333311 22345778999874
Q ss_pred ChhHHHH
Q 000129 1513 NAKDLGE 1519 (2114)
Q Consensus 1513 n~~dla~ 1519 (2114)
..++.+
T Consensus 344 -~~~l~~ 349 (424)
T PRK05703 344 -YEDLKD 349 (424)
T ss_pred -HHHHHH
Confidence 444443
No 451
>PRK08727 hypothetical protein; Validated
Probab=93.51 E-value=0.41 Score=56.75 Aligned_cols=35 Identities=23% Similarity=0.425 Sum_probs=23.3
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEc
Q 000129 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~ 1397 (2114)
+.+++.||+|+|||..+. ++...+.+ .+. +++|+.
T Consensus 42 ~~l~l~G~~G~GKThL~~-a~~~~~~~--~~~--~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLAL-ALCAAAEQ--AGR--SSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHH--cCC--cEEEEe
Confidence 459999999999997663 44444443 122 677764
No 452
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.49 E-value=0.11 Score=59.15 Aligned_cols=47 Identities=28% Similarity=0.301 Sum_probs=32.8
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000129 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2114)
Q Consensus 514 vlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (2114)
++|.||+|+|||..++..+...+..+ .+++|++.. +-..++.+++..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g-----------~~v~~~s~e-~~~~~~~~~~~~ 48 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARG-----------EPGLYVTLE-ESPEELIENAES 48 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCC-----------CcEEEEECC-CCHHHHHHHHHH
Confidence 78999999999998877777666432 268888653 445555555544
No 453
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=93.45 E-value=0.13 Score=71.18 Aligned_cols=109 Identities=22% Similarity=0.196 Sum_probs=74.1
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHh
Q 000129 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~ 573 (2114)
..||+-|.+++.. ...+++|.|..|||||.+..--+.+.+.... .+.-+|++++.|+..|.++.+++.+.
T Consensus 3 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~-------v~p~~IL~lTFTnkAA~em~~Rl~~~ 72 (715)
T TIGR01075 3 DGLNDKQREAVAA---PPGNLLVLAGAGSGKTRVLTHRIAWLLSVEN-------ASPHSIMAVTFTNKAAAEMRHRIGAL 72 (715)
T ss_pred cccCHHHHHHHcC---CCCCEEEEecCCCCHHHHHHHHHHHHHHcCC-------CCHHHeEeeeccHHHHHHHHHHHHHH
Confidence 4699999999863 3457999999999999997766666664321 12347999999999999999999886
Q ss_pred hccCCcEEEEEeCCCccChhhhccceEEEcCHhHH-HHHHhccCC-CcccccccEEEEeccc
Q 000129 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKSGD-RTYTQLVKLLIIDEIH 633 (2114)
Q Consensus 574 ~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~-d~l~r~~~~-~~~l~~v~liIiDEaH 633 (2114)
++. + ...+.|+|-..| ..+.|.... ..+.. .+-|+|+.+
T Consensus 73 ~~~----------~---------~~~~~i~TfHs~~~~iLr~~~~~~g~~~--~f~i~d~~d 113 (715)
T TIGR01075 73 LGT----------S---------ARGMWIGTFHGLAHRLLRAHHLDAGLPQ--DFQILDSDD 113 (715)
T ss_pred hcc----------c---------ccCcEEEcHHHHHHHHHHHHHHHhCCCC--CCeecCHHH
Confidence 531 0 124678998886 334443211 11111 245677765
No 454
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=93.45 E-value=0.4 Score=52.81 Aligned_cols=40 Identities=35% Similarity=0.494 Sum_probs=26.3
Q ss_pred EEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHH
Q 000129 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (2114)
Q Consensus 1360 vli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~ 1404 (2114)
++|.||+|+|||..+...+.. +.. .++ .++|+........
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~-~~~--~~~--~v~~~~~e~~~~~ 41 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALN-IAT--KGG--KVVYVDIEEEIEE 41 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHH-HHh--cCC--EEEEEECCcchHH
Confidence 689999999999877444333 322 234 7888776655433
No 455
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=93.43 E-value=0.2 Score=66.76 Aligned_cols=175 Identities=14% Similarity=0.186 Sum_probs=102.4
Q ss_pred CCCCHHHHHHHHHHHcCC-CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHH-HHHHHhcCC
Q 000129 1340 KHFNPIQTQVFTVLYNTD-DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYR-DWEIKFGQG 1417 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il~~~-~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~-~~~~~f~~~ 1417 (2114)
...+|+|.+..+.+-... +.|+++.++-+|||.+.+..+...+.. . .+ .++|+.||..+|....+ ++.-.+...
T Consensus 15 ~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~-~-P~--~~l~v~Pt~~~a~~~~~~rl~Pmi~~s 90 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQ-D-PG--PMLYVQPTDDAAKDFSKERLDPMIRAS 90 (557)
T ss_pred CCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEe-C-CC--CEEEEEEcHHHHHHHHHHHHHHHHHhC
Confidence 478999999999886533 569999999999999765555443333 2 33 78999999999998763 343333221
Q ss_pred CCcE--EEE---EcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC---CCCchHHHHHH
Q 000129 1418 LGMR--VVE---LTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG---QGGPVLEVIVS 1489 (2114)
Q Consensus 1418 ~g~~--v~~---l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~---~~g~~le~i~s 1489 (2114)
..++ +.. -.++.+...+.+..+.+.++....-. ...-..++++++||++.... ..|..++....
T Consensus 91 p~l~~~~~~~~~~~~~~t~~~k~f~gg~l~~~ga~S~~--------~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~ 162 (557)
T PF05876_consen 91 PVLRRKLSPSKSRDSGNTILYKRFPGGFLYLVGANSPS--------NLRSRPARYLLLDEVDRYPDDVGGEGDPVELAEK 162 (557)
T ss_pred HHHHHHhCchhhcccCCchhheecCCCEEEEEeCCCCc--------ccccCCcCEEEEechhhccccCccCCCHHHHHHH
Confidence 1111 100 11222233445555566665432211 11123578999999998843 34778888888
Q ss_pred HHHHHHhhcCCCceEEEEcc-cCCChhHHHHHhcCCCCceee
Q 000129 1490 RMRYIASQVENKIRIVALST-SLANAKDLGEWIGATSHGLFN 1530 (2114)
Q Consensus 1490 rl~~i~~~~~~~~riV~lSA-Tl~n~~dla~wl~~~~~~~~~ 1530 (2114)
|.+.. ....+++..|. |......+...........+.
T Consensus 163 R~~tf----~~~~K~~~~STPt~~~~~~I~~~~~~sdqr~~~ 200 (557)
T PF05876_consen 163 RTKTF----GSNRKILRISTPTIEGTSRIERLYEESDQRRYY 200 (557)
T ss_pred HHhhh----ccCcEEEEeCCCCCCCCCHHHHHHHhCCceEEE
Confidence 87654 23445555554 333234555544444433333
No 456
>PRK08116 hypothetical protein; Validated
Probab=93.41 E-value=0.43 Score=57.71 Aligned_cols=80 Identities=23% Similarity=0.375 Sum_probs=45.3
Q ss_pred ccCCCChhhHh-hcCCCCCCCHHHHHHHHHHH---c-----CCCc--EEEEccCCCchHHHHHHHHHHHHHhccCCCCCC
Q 000129 478 KISEMPEWAQP-AFKGMTQLNRVQSRVYKSAL---S-----SADN--ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSF 546 (2114)
Q Consensus 478 ~i~~lp~~~~~-~f~g~~~l~~iQ~~~i~~~l---~-----~~~n--vlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~ 546 (2114)
..+.+|+.+.. .|.+|. .++-|..++..+. . ...+ ++++||+|+|||..+. +|.+.+...
T Consensus 71 ~~s~i~~~~~~~tFdnf~-~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~-aia~~l~~~------- 141 (268)
T PRK08116 71 SNSLLDEKFRNSTFENFL-FDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAA-CIANELIEK------- 141 (268)
T ss_pred HhcCCCHHHHhcchhccc-CChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHH-HHHHHHHHc-------
Confidence 33445544443 355565 4666666655432 1 1234 9999999999998775 466665542
Q ss_pred CCCCcEEEEEcccHHHHHHHHHHH
Q 000129 547 NHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 547 ~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
+..++|+ +...|..++...+
T Consensus 142 ---~~~v~~~-~~~~ll~~i~~~~ 161 (268)
T PRK08116 142 ---GVPVIFV-NFPQLLNRIKSTY 161 (268)
T ss_pred ---CCeEEEE-EHHHHHHHHHHHH
Confidence 1245554 4555555544433
No 457
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=93.38 E-value=1.5 Score=57.82 Aligned_cols=144 Identities=15% Similarity=0.160 Sum_probs=80.9
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC-------CcEEEEEcCCc
Q 000129 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL-------GMRVVELTGET 1429 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~-------g~~v~~l~G~~ 1429 (2114)
..-.++.+|=|.|||.+..+.+...+.. .+ .+++|.+|...-+.+++++....+.... +-.+....|+.
T Consensus 187 q~~tV~taPRqrGKS~iVgi~l~~La~f--~G--i~IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp~~~~iv~vkgg~ 262 (752)
T PHA03333 187 KCYTAATVPRRCGKTTIMAIILAAMISF--LE--IDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWFPEEFKIVTLKGTD 262 (752)
T ss_pred hcceEEEeccCCCcHHHHHHHHHHHHHh--cC--CeEEEECCChhhHHHHHHHHHHHHHHhccccccCCCceEEEeeCCe
Confidence 3447788999999998887666644432 22 4999999999999999998887665220 11222222321
Q ss_pred c-cch---hhc--cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCce
Q 000129 1430 A-MDL---KLL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIR 1503 (2114)
Q Consensus 1430 ~-~~~---~~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~r 1503 (2114)
. ... ... ..+.|.+++-.. ....-.+++++|+|||+.+.. +.++.++. ...+ .+.+
T Consensus 263 E~I~f~~p~gak~G~sti~F~Ars~---------~s~RG~~~DLLIVDEAAfI~~---~~l~aIlP----~l~~--~~~k 324 (752)
T PHA03333 263 ENLEYISDPAAKEGKTTAHFLASSP---------NAARGQNPDLVIVDEAAFVNP---GALLSVLP----LMAV--KGTK 324 (752)
T ss_pred eEEEEecCcccccCcceeEEecccC---------CCcCCCCCCEEEEECcccCCH---HHHHHHHH----HHcc--CCCc
Confidence 1 000 000 113344433111 111113578999999998864 23333333 2222 4677
Q ss_pred EEEEcccCCChhHHHHHhcC
Q 000129 1504 IVALSTSLANAKDLGEWIGA 1523 (2114)
Q Consensus 1504 iV~lSATl~n~~dla~wl~~ 1523 (2114)
++.+|.+- .+...-.+++.
T Consensus 325 ~IiISS~~-~~~s~tS~L~n 343 (752)
T PHA03333 325 QIHISSPV-DADSWISRVGE 343 (752)
T ss_pred eEEEeCCC-CcchHHHHhhh
Confidence 88888875 34444444443
No 458
>PHA02533 17 large terminase protein; Provisional
Probab=93.35 E-value=0.95 Score=59.83 Aligned_cols=71 Identities=11% Similarity=0.054 Sum_probs=52.9
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~ 1415 (2114)
.++|+|...+..+...+- .++..+=..|||.+....++..... .++. .+++++|++.-|..+++.++..+.
T Consensus 59 ~L~p~Q~~i~~~~~~~R~-~ii~~aRq~GKStl~a~~al~~a~~-~~~~--~v~i~A~~~~QA~~vF~~ik~~ie 129 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRF-NACNLSRQLGKTTVVAIFLLHYVCF-NKDK--NVGILAHKASMAAEVLDRTKQAIE 129 (534)
T ss_pred CCcHHHHHHHHHHhcCeE-EEEEEcCcCChHHHHHHHHHHHHHh-CCCC--EEEEEeCCHHHHHHHHHHHHHHHH
Confidence 588999999988755444 5688888999998876444433332 2333 899999999999999988875444
No 459
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=93.29 E-value=0.58 Score=55.21 Aligned_cols=34 Identities=12% Similarity=0.172 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHc---CCCcEEEEccCCCchHHHHHH
Q 000129 497 NRVQSRVYKSALS---SADNILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 497 ~~iQ~~~i~~~l~---~~~nvlv~APTGsGKT~~a~l 530 (2114)
+.....++..+.. ...+++++||+|+|||..+..
T Consensus 25 ~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~a 61 (227)
T PRK08903 25 NAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQA 61 (227)
T ss_pred cHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHH
Confidence 4445555555433 345799999999999976643
No 460
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=93.21 E-value=0.34 Score=53.39 Aligned_cols=39 Identities=36% Similarity=0.488 Sum_probs=26.3
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHH
Q 000129 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV 563 (2114)
Q Consensus 514 vlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa 563 (2114)
++|+||+|+|||..+...+...... +..++|+.....+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~-----------~~~v~~~~~e~~~~ 40 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK-----------GGKVVYVDIEEEIE 40 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc-----------CCEEEEEECCcchH
Confidence 6899999999999776554444321 23678877655543
No 461
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=93.20 E-value=0.4 Score=62.70 Aligned_cols=45 Identities=20% Similarity=0.274 Sum_probs=29.2
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHH
Q 000129 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKER 1406 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~ 1406 (2114)
..+++.||+|+|||..+ .++.+.+....++. +++|+. ...+..+.
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~~~~~~~~--~v~yi~-~~~~~~~~ 193 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYILEKNPNA--KVVYVT-SEKFTNDF 193 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHhCCCC--eEEEEE-HHHHHHHH
Confidence 45899999999999876 45555555522233 677774 34555443
No 462
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.19 E-value=0.16 Score=64.31 Aligned_cols=149 Identities=15% Similarity=0.175 Sum_probs=79.4
Q ss_pred EecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhh------c
Q 000129 1363 AAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKL------L 1436 (2114)
Q Consensus 1363 ~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~------l 1436 (2114)
...||||||++..-.||....++. . .-++.|..-.....+...|........=.+-.+..+|.....+. .
T Consensus 3 ~matgsgkt~~ma~lil~~y~kgy--r--~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fseh 78 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKKGY--R--NFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEH 78 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHhch--h--hEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCcc
Confidence 468999999998888887776632 2 56777776666655544332111100000001112222222111 1
Q ss_pred cC-CcEEEEChhhHHHHHhhhcccc----ccccee-EEEecccccccCCC----------CchHHHHHHHHHHHHhhcCC
Q 000129 1437 EK-GQIIISTPEKWDALSRRWKQRK----YVQQVS-LFIIDELHLIGGQG----------GPVLEVIVSRMRYIASQVEN 1500 (2114)
Q Consensus 1437 ~~-~~IIV~TPe~l~~l~r~~~~~~----~l~~v~-liIiDEaH~l~~~~----------g~~le~i~srl~~i~~~~~~ 1500 (2114)
.. -.|.++|.+.+...+.+-+... .+.+.. +++-||+|++.... -..||..+ .....+ .+
T Consensus 79 nd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v---~la~~~-nk 154 (812)
T COG3421 79 NDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVV---KLALEQ-NK 154 (812)
T ss_pred CCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHH---HHHHhc-CC
Confidence 12 2799999999866554433221 344444 45789999997531 12233322 111222 45
Q ss_pred CceEEEEcccCCChhHHHH
Q 000129 1501 KIRIVALSTSLANAKDLGE 1519 (2114)
Q Consensus 1501 ~~riV~lSATl~n~~dla~ 1519 (2114)
+--++.+|||++...++.+
T Consensus 155 d~~~lef~at~~k~k~v~~ 173 (812)
T COG3421 155 DNLLLEFSATIPKEKSVED 173 (812)
T ss_pred CceeehhhhcCCccccHHH
Confidence 5667789999986555544
No 463
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=93.18 E-value=0.18 Score=69.50 Aligned_cols=86 Identities=20% Similarity=0.148 Sum_probs=65.3
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.||+-|.+++.. ...+++|.|..|||||.+..--+.+.+..... ...++++|+.|+..+.++.+++.+.+
T Consensus 1 ~Ln~~Q~~av~~---~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~-------~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 1 KLNPQQQEAVEY---VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGY-------KARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCC-------CHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 379999998863 34579999999999999988777777754211 23479999999999999999998765
Q ss_pred ccCCcEEEEEeCCCccChhhhccceEEEcCHhHH
Q 000129 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW 608 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~ 608 (2114)
+.. ....+-|+|-..|
T Consensus 71 ~~~------------------~~~~v~v~TfHs~ 86 (664)
T TIGR01074 71 GKG------------------EARGLTISTFHTL 86 (664)
T ss_pred Ccc------------------ccCCeEEEeHHHH
Confidence 310 1245788998886
No 464
>PRK04296 thymidine kinase; Provisional
Probab=93.17 E-value=0.071 Score=61.00 Aligned_cols=34 Identities=12% Similarity=0.195 Sum_probs=24.8
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 514 vlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
.+++||+|+|||..++-.+.+....+ .+++|+-|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~g-----------~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEERG-----------MKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHcC-----------CeEEEEec
Confidence 68899999999988776665554332 36777766
No 465
>PRK06921 hypothetical protein; Provisional
Probab=93.14 E-value=0.5 Score=57.00 Aligned_cols=45 Identities=18% Similarity=0.252 Sum_probs=29.3
Q ss_pred CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHH
Q 000129 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q 1405 (2114)
...++++.||||+|||..+ .+|.+.+... .+ ..++|+. ..++..+
T Consensus 116 ~~~~l~l~G~~G~GKThLa-~aia~~l~~~--~g-~~v~y~~-~~~l~~~ 160 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL-TAAANELMRK--KG-VPVLYFP-FVEGFGD 160 (266)
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHHhhh--cC-ceEEEEE-HHHHHHH
Confidence 3568999999999999876 4666666541 12 2666655 3444443
No 466
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.13 E-value=0.19 Score=57.19 Aligned_cols=47 Identities=19% Similarity=0.267 Sum_probs=32.8
Q ss_pred cEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHH
Q 000129 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2114)
Q Consensus 1359 nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~ 1411 (2114)
.++|.||+|+|||..+...+...+.. +. +++|+.. .+-..++.+++.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~---g~--~v~~~s~-e~~~~~~~~~~~ 47 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR---GE--PGLYVTL-EESPEELIENAE 47 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC---CC--cEEEEEC-CCCHHHHHHHHH
Confidence 37899999999999887666665543 33 7788754 455566666554
No 467
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=93.13 E-value=0.65 Score=54.79 Aligned_cols=32 Identities=16% Similarity=0.122 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHc---CCCcEEEEecCCCchHHHHH
Q 000129 1344 PIQTQVFTVLYN---TDDNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1344 ~iQ~q~~~~il~---~~~nvli~ApTGSGKTl~~~ 1375 (2114)
.....++..+.. ...+++++||+|+|||..+.
T Consensus 26 ~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 26 AELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred HHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHH
Confidence 334444444432 45679999999999997763
No 468
>PRK06893 DNA replication initiation factor; Validated
Probab=93.11 E-value=0.65 Score=54.91 Aligned_cols=36 Identities=19% Similarity=0.117 Sum_probs=23.0
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcc
Q 000129 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP 1398 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~P 1398 (2114)
..+++.||+|+|||..+ .++.+.+... +. +++|+.-
T Consensus 40 ~~l~l~G~~G~GKThL~-~ai~~~~~~~--~~--~~~y~~~ 75 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLL-KAVSNHYLLN--QR--TAIYIPL 75 (229)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHc--CC--CeEEeeH
Confidence 34789999999999776 3444444431 22 5666543
No 469
>PRK05748 replicative DNA helicase; Provisional
Probab=93.10 E-value=0.4 Score=62.59 Aligned_cols=144 Identities=25% Similarity=0.260 Sum_probs=80.6
Q ss_pred cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEE-EEcCCcccc-
Q 000129 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVV-ELTGETAMD- 1432 (2114)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~-~l~G~~~~~- 1432 (2114)
..++-++|.|+||.|||..++-.+.+.... .+. .++|+ ....-..|+..++...++.. ... ...|.....
T Consensus 201 ~~G~livIaarpg~GKT~~al~ia~~~a~~--~g~--~v~~f-SlEms~~~l~~R~l~~~~~v---~~~~i~~~~l~~~e 272 (448)
T PRK05748 201 QPNDLIIVAARPSVGKTAFALNIAQNVATK--TDK--NVAIF-SLEMGAESLVMRMLCAEGNI---DAQRLRTGQLTDDD 272 (448)
T ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHHHh--CCC--eEEEE-eCCCCHHHHHHHHHHHhcCC---CHHHhhcCCCCHHH
Confidence 456779999999999998776555443333 122 45554 44445566666664344322 211 112332221
Q ss_pred -------hhhccCCcEEEE-----ChhhHHHHHhhhcccccccceeEEEecccccccCCC------CchHHHHHHHHHHH
Q 000129 1433 -------LKLLEKGQIIIS-----TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG------GPVLEVIVSRMRYI 1494 (2114)
Q Consensus 1433 -------~~~l~~~~IIV~-----TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~------g~~le~i~srl~~i 1494 (2114)
...+.+..+.|. |++.+....+++.... .++++||||=.|.+.... ...+..+...++.+
T Consensus 273 ~~~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~--~~~~~vvIDyL~li~~~~~~~~~r~~~i~~i~~~LK~l 350 (448)
T PRK05748 273 WPKLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEH--GGLGLILIDYLQLIQGSGRSGENRQQEVSEISRSLKAL 350 (448)
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhc--CCCCEEEEccchhcCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 123344456553 4455555555543221 268999999999885321 12244566677777
Q ss_pred HhhcCCCceEEEEccc
Q 000129 1495 ASQVENKIRIVALSTS 1510 (2114)
Q Consensus 1495 ~~~~~~~~riV~lSAT 1510 (2114)
...+ ++.+|++|-.
T Consensus 351 Ake~--~i~vi~lsQl 364 (448)
T PRK05748 351 AKEL--KVPVIALSQL 364 (448)
T ss_pred HHHh--CCeEEEeccc
Confidence 6643 6778888765
No 470
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.05 E-value=0.33 Score=64.16 Aligned_cols=31 Identities=35% Similarity=0.495 Sum_probs=21.8
Q ss_pred HHHHHHHHcCC---CcEEEEccCCCchHHHHHHH
Q 000129 501 SRVYKSALSSA---DNILLCAPTGAGKTNVAVLT 531 (2114)
Q Consensus 501 ~~~i~~~l~~~---~nvlv~APTGsGKT~~a~l~ 531 (2114)
.+.+..++.++ ..+|++||.|+|||.+|.+.
T Consensus 24 v~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriL 57 (702)
T PRK14960 24 SRALSSALERGRLHHAYLFTGTRGVGKTTIARIL 57 (702)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 34455555544 35699999999999987544
No 471
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.01 E-value=0.28 Score=59.40 Aligned_cols=38 Identities=18% Similarity=0.207 Sum_probs=27.4
Q ss_pred CCCCCHHHHHHHHHHH---c-CCCcEEEEecCCCchHHHHHH
Q 000129 1339 FKHFNPIQTQVFTVLY---N-TDDNVLVAAPTGSGKTICSEF 1376 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il---~-~~~nvli~ApTGSGKTl~~~l 1376 (2114)
+-..++.+.+++..+- . +...+++.||+|+|||+.+..
T Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~ 62 (269)
T TIGR03015 21 FFYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRN 62 (269)
T ss_pred HhCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 3356777777777653 3 344789999999999987743
No 472
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=92.86 E-value=0.076 Score=54.14 Aligned_cols=65 Identities=12% Similarity=-0.017 Sum_probs=45.0
Q ss_pred HHHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCCh
Q 000129 975 AATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQ 1046 (2114)
Q Consensus 975 al~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~i~s~s~ef~~i~~r~ 1046 (2114)
|++.|...|+|+.+ ..+|++|+.++.++++|.-.+++..+...+|. .+++.|.|.-++ .++.++.
T Consensus 2 A~~~L~~Lgald~~-----~~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~~-~~~~~iaa~ls~-~~~f~~~ 66 (102)
T PF04408_consen 2 ALELLKSLGALDEN-----GNLTPLGRKMSQLPLDPRLAKMLLYGIQFGCL-DEALIIAAILSV-RSPFINP 66 (102)
T ss_dssp HHHHHHHTTSB-TT-----S-B-HHHHHHTTSSS-HHHHHHHHHHHHCT-H-HHHHHHHHHHTS-S--B---
T ss_pred HHHHHHHCCCCCCC-----CCcCHHHHHHHHCCCchHhHhHhhhccccccH-HHHHHHHHHHcC-CCcccCc
Confidence 67889999999633 38999999999999999999999988777774 566666666666 6676664
No 473
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=92.85 E-value=0.66 Score=54.57 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=17.7
Q ss_pred CCCcEEEEecCCCchHHHHHH
Q 000129 1356 TDDNVLVAAPTGSGKTICSEF 1376 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~l 1376 (2114)
...++++.||+|+|||.++..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 456899999999999988744
No 474
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=92.84 E-value=0.43 Score=56.15 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=18.4
Q ss_pred CCCcEEEEccCCCchHHHHHHHH
Q 000129 510 SADNILLCAPTGAGKTNVAVLTI 532 (2114)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l~i 532 (2114)
...+++++||+|+|||..+....
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~ 59 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAAC 59 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 34579999999999998875433
No 475
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=92.82 E-value=0.22 Score=68.96 Aligned_cols=109 Identities=22% Similarity=0.156 Sum_probs=72.6
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhc-cCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000129 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA-SETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~-~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~ 1418 (2114)
..+||-|.+|+.. ...+++|.|..|||||.+..--+...+... -+.. ++++|+-|+..|.++.+++.+.++..
T Consensus 8 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~--~IL~lTFT~kAA~Em~~Rl~~~~~~~- 81 (721)
T PRK11773 8 DSLNDKQREAVAA---PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPY--SIMAVTFTNKAAAEMRHRIEQLLGTS- 81 (721)
T ss_pred HhcCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChh--HeEeeeccHHHHHHHHHHHHHHhccC-
Confidence 4699999999874 356799999999999988766655555431 1233 89999999999999988887544310
Q ss_pred CcEEEEEcCCcccchhhccCCcEEEEChhhHHH-HHhhhcccccccceeEEEecccc
Q 000129 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDA-LSRRWKQRKYVQQVSLFIIDELH 1474 (2114)
Q Consensus 1419 g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~-l~r~~~~~~~l~~v~liIiDEaH 1474 (2114)
...+.|+|-..|.. ++|.......+. -.+-|+|+.+
T Consensus 82 -------------------~~~~~i~TfHs~~~~iLr~~~~~~g~~-~~f~i~d~~d 118 (721)
T PRK11773 82 -------------------QGGMWVGTFHGLAHRLLRAHWQDANLP-QDFQILDSDD 118 (721)
T ss_pred -------------------CCCCEEEcHHHHHHHHHHHHHHHhCCC-CCCeecCHHH
Confidence 12467888877643 455422111111 1244677765
No 476
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=92.82 E-value=1.2 Score=52.26 Aligned_cols=123 Identities=20% Similarity=0.316 Sum_probs=64.9
Q ss_pred CHHHHHHHHHHHcCCC----cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000129 497 NRVQSRVYKSALSSAD----NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2114)
Q Consensus 497 ~~iQ~~~i~~~l~~~~----nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (2114)
|..=..+...+....+ .++++||+|+|||-. +.++.+.+.... ++.+++|+... +...+....+..
T Consensus 16 N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHL-L~Ai~~~~~~~~--------~~~~v~y~~~~-~f~~~~~~~~~~ 85 (219)
T PF00308_consen 16 NELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHL-LQAIANEAQKQH--------PGKRVVYLSAE-EFIREFADALRD 85 (219)
T ss_dssp THHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHH-HHHHHHHHHHHC--------TTS-EEEEEHH-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHH-HHHHHHHHHhcc--------ccccceeecHH-HHHHHHHHHHHc
Confidence 4433344444444322 489999999999974 455666555431 23478887543 444444333322
Q ss_pred hhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHH
Q 000129 573 RLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVR 652 (2114)
Q Consensus 573 ~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~ 652 (2114)
...+. +.. .+...++++||.+|.+.+. +..+..+-.+..
T Consensus 86 ------------------------------~~~~~---~~~------~~~~~DlL~iDDi~~l~~~--~~~q~~lf~l~n 124 (219)
T PF00308_consen 86 ------------------------------GEIEE---FKD------RLRSADLLIIDDIQFLAGK--QRTQEELFHLFN 124 (219)
T ss_dssp ------------------------------TSHHH---HHH------HHCTSSEEEEETGGGGTTH--HHHHHHHHHHHH
T ss_pred ------------------------------ccchh---hhh------hhhcCCEEEEecchhhcCc--hHHHHHHHHHHH
Confidence 01121 111 2335799999999998642 222223333333
Q ss_pred HHhhccccccEEEEccccCC
Q 000129 653 QIETTKEHIRLVGLSATLPN 672 (2114)
Q Consensus 653 ~~~~~~~~~riv~lSATlpn 672 (2114)
... ..+.++|+.|...|.
T Consensus 125 ~~~--~~~k~li~ts~~~P~ 142 (219)
T PF00308_consen 125 RLI--ESGKQLILTSDRPPS 142 (219)
T ss_dssp HHH--HTTSEEEEEESS-TT
T ss_pred HHH--hhCCeEEEEeCCCCc
Confidence 222 235577777767664
No 477
>PRK05642 DNA replication initiation factor; Validated
Probab=92.81 E-value=0.56 Score=55.62 Aligned_cols=36 Identities=17% Similarity=0.187 Sum_probs=24.3
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcc
Q 000129 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP 1398 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~P 1398 (2114)
.+++++||+|+|||-.+ .++.+.+.. .+. +++|+..
T Consensus 46 ~~l~l~G~~G~GKTHLl-~a~~~~~~~--~~~--~v~y~~~ 81 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLL-QAACLRFEQ--RGE--PAVYLPL 81 (234)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHh--CCC--cEEEeeH
Confidence 46899999999999774 455554443 123 6777653
No 478
>PRK06835 DNA replication protein DnaC; Validated
Probab=92.80 E-value=0.5 Score=58.66 Aligned_cols=46 Identities=24% Similarity=0.319 Sum_probs=30.5
Q ss_pred CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHH
Q 000129 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~ 1407 (2114)
...++++.||||+|||..+ .+|.+.+.. .+. .++|+ +..+|..+..
T Consensus 182 ~~~~Lll~G~~GtGKThLa-~aIa~~l~~--~g~--~V~y~-t~~~l~~~l~ 227 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLS-NCIAKELLD--RGK--SVIYR-TADELIEILR 227 (329)
T ss_pred cCCcEEEECCCCCcHHHHH-HHHHHHHHH--CCC--eEEEE-EHHHHHHHHH
Confidence 4578999999999999876 456665554 122 56664 4455655443
No 479
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=92.77 E-value=0.86 Score=55.33 Aligned_cols=143 Identities=20% Similarity=0.208 Sum_probs=71.8
Q ss_pred cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEE---cCCccc
Q 000129 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVEL---TGETAM 1431 (2114)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l---~G~~~~ 1431 (2114)
..+..++|.||||+|||..+...+.+.... .+. +++|+.- ..-..++..++...+. |..+... .+....
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~--~g~--~vl~iS~-E~~~~~~~~r~~~~~~---~~~~~~~~~~~~~~~~ 99 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQ--HGV--RVGTISL-EEPVVRTARRLLGQYA---GKRLHLPDTVFIYTLE 99 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHh--cCc--eEEEEEc-ccCHHHHHHHHHHHHh---CCCcccCCccccccHH
Confidence 456779999999999998775555444333 122 7777753 2234455555543332 2221110 010000
Q ss_pred c----hhhcc-CCcEEEE------ChhhHHHHHhhhcccccccceeEEEecccccccCCC---C---chHHHHHHHHHHH
Q 000129 1432 D----LKLLE-KGQIIIS------TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG---G---PVLEVIVSRMRYI 1494 (2114)
Q Consensus 1432 ~----~~~l~-~~~IIV~------TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~---g---~~le~i~srl~~i 1494 (2114)
. ...+. ...+.+- |++.+...++... .-.++++||||.++.+.... . ..+..++..++.+
T Consensus 100 ~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~---~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~~L~~l 176 (271)
T cd01122 100 EFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMA---VSHGIQHIIIDNLSIMVSDERASGDERKALDEIMTKLRGF 176 (271)
T ss_pred HHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHH---hcCCceEEEECCHHHHhccCCCchhHHHHHHHHHHHHHHH
Confidence 0 01111 1223222 3344444443321 12368999999999875432 1 1234555666666
Q ss_pred HhhcCCCceEEEEccc
Q 000129 1495 ASQVENKIRIVALSTS 1510 (2114)
Q Consensus 1495 ~~~~~~~~riV~lSAT 1510 (2114)
+.. .++-++++|-+
T Consensus 177 a~~--~~vtvll~sq~ 190 (271)
T cd01122 177 ATE--HGIHITLVSHL 190 (271)
T ss_pred HHH--hCCEEEEEecc
Confidence 554 35666666643
No 480
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=92.77 E-value=0.8 Score=58.23 Aligned_cols=25 Identities=32% Similarity=0.624 Sum_probs=18.7
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHH
Q 000129 512 DNILLCAPTGAGKTNVAVLTILQQLA 537 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~ 537 (2114)
.+++|+||+|+|||.++. .+++.+.
T Consensus 41 ~~i~I~G~~GtGKT~l~~-~~~~~l~ 65 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTK-YVMKELE 65 (365)
T ss_pred CcEEEECCCCCCHHHHHH-HHHHHHH
Confidence 579999999999998764 3444443
No 481
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=92.76 E-value=0.24 Score=52.59 Aligned_cols=17 Identities=35% Similarity=0.663 Sum_probs=14.4
Q ss_pred EEEEecCCCchHHHHHH
Q 000129 1360 VLVAAPTGSGKTICSEF 1376 (2114)
Q Consensus 1360 vli~ApTGSGKTl~~~l 1376 (2114)
+++.||+|+|||..+..
T Consensus 1 ill~G~~G~GKT~l~~~ 17 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARA 17 (132)
T ss_dssp EEEESSTTSSHHHHHHH
T ss_pred CEEECcCCCCeeHHHHH
Confidence 68999999999987643
No 482
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=92.69 E-value=0.25 Score=59.89 Aligned_cols=61 Identities=21% Similarity=0.321 Sum_probs=48.1
Q ss_pred cCCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHH
Q 000129 490 FKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (2114)
Q Consensus 490 f~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raL 562 (2114)
|-.|..+++-|.+.+..+.....|+|+|+-||||||+. ++.+...... .. ++|.+--+.+|
T Consensus 152 li~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-----LNal~~~i~~------~e-RvItiEDtaEL 212 (355)
T COG4962 152 LIIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-----LNALSGFIDS------DE-RVITIEDTAEL 212 (355)
T ss_pred HHHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-----HHHHHhcCCC------cc-cEEEEeehhhh
Confidence 34688999999999999999999999999999999964 4555444322 12 88888888776
No 483
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=92.69 E-value=0.52 Score=56.92 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=17.1
Q ss_pred CcEEEEecCCCchHHHHHHH
Q 000129 1358 DNVLVAAPTGSGKTICSEFA 1377 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~ 1377 (2114)
.++++.||+|+|||.++...
T Consensus 43 ~~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHH
Confidence 47999999999999988544
No 484
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.68 E-value=0.71 Score=60.00 Aligned_cols=31 Identities=32% Similarity=0.552 Sum_probs=22.2
Q ss_pred HHHHHHHcCC---CcEEEEccCCCchHHHHHHHH
Q 000129 502 RVYKSALSSA---DNILLCAPTGAGKTNVAVLTI 532 (2114)
Q Consensus 502 ~~i~~~l~~~---~nvlv~APTGsGKT~~a~l~i 532 (2114)
+.+..++..+ ..+|++||.|+|||.+|.+..
T Consensus 23 ~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilA 56 (491)
T PRK14964 23 RILRNAFTLNKIPQSILLVGASGVGKTTCARIIS 56 (491)
T ss_pred HHHHHHHHcCCCCceEEEECCCCccHHHHHHHHH
Confidence 3444555544 369999999999999886543
No 485
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=92.67 E-value=0.91 Score=58.44 Aligned_cols=135 Identities=14% Similarity=0.209 Sum_probs=82.4
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHH-HHHHHHHHHHHhhccCCcEEEEEeCCCccCh
Q 000129 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA-LVAEVVGNLSNRLQMYDVKVRELSGDQTLTR 592 (2114)
Q Consensus 514 vlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ra-La~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~ 592 (2114)
.+++|..|||||.++.+.++..+.... .+.+++++.|+.. |..-++..+...+..+|+....-.....+.-
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~--------~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~~i 75 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINK--------KQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSMEI 75 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcC--------CCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCccEE
Confidence 678999999999999888887776641 1347999999887 7777788888777766654222222221111
Q ss_pred hhhc-cceEEEcCH-hHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEcccc
Q 000129 593 QQIE-ETQIIVTTP-EKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670 (2114)
Q Consensus 593 ~~~~-~~~IiV~TP-ek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATl 670 (2114)
.... +..|++..- +..+.+.. ...+.++.+|||..+.. ..++.++.|+. ... ..+.+.+|.|.
T Consensus 76 ~~~~~g~~i~f~g~~d~~~~ik~-------~~~~~~~~idEa~~~~~---~~~~~l~~rlr----~~~-~~~~i~~t~NP 140 (396)
T TIGR01547 76 KILNTGKKFIFKGLNDKPNKLKS-------GAGIAIIWFEEASQLTF---EDIKELIPRLR----ETG-GKKFIIFSSNP 140 (396)
T ss_pred EecCCCeEEEeecccCChhHhhC-------cceeeeehhhhhhhcCH---HHHHHHHHHhh----ccC-CccEEEEEcCc
Confidence 1112 345666543 33222221 12368999999998753 36777776642 111 22247778884
Q ss_pred C
Q 000129 671 P 671 (2114)
Q Consensus 671 p 671 (2114)
+
T Consensus 141 ~ 141 (396)
T TIGR01547 141 E 141 (396)
T ss_pred C
Confidence 4
No 486
>PRK05973 replicative DNA helicase; Provisional
Probab=92.61 E-value=0.81 Score=53.91 Aligned_cols=131 Identities=20% Similarity=0.208 Sum_probs=69.4
Q ss_pred HcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccch
Q 000129 1354 YNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL 1433 (2114)
Q Consensus 1354 l~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~ 1433 (2114)
+..++-++|.|++|+|||+.+...+.+.... +. +++|+.--- -..|+.+++. .++ +....+
T Consensus 61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~---Ge--~vlyfSlEe-s~~~i~~R~~-s~g----~d~~~~-------- 121 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAVEAMKS---GR--TGVFFTLEY-TEQDVRDRLR-ALG----ADRAQF-------- 121 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc---CC--eEEEEEEeC-CHHHHHHHHH-HcC----CChHHh--------
Confidence 3456779999999999999887766665543 33 778875433 3466666665 332 110000
Q ss_pred hhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCC-CCchHHHHHHHHHHHHhhcCCCceEEEEccc
Q 000129 1434 KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGPVLEVIVSRMRYIASQVENKIRIVALSTS 1510 (2114)
Q Consensus 1434 ~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~-~g~~le~i~srl~~i~~~~~~~~riV~lSAT 1510 (2114)
.....+....+...+.+.++... -.+.++||||=+..+... ..+.+..++..++.+.+. .++-+|++|-.
T Consensus 122 --~~~~~~d~~d~~~~~~ii~~l~~---~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~--~gitvIl~sQl 192 (237)
T PRK05973 122 --ADLFEFDTSDAICADYIIARLAS---APRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARE--RGLIIVFISQI 192 (237)
T ss_pred --ccceEeecCCCCCHHHHHHHHHH---hhCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHh--CCCeEEEEecC
Confidence 00000111111112222333221 124689999999977432 233444445556655543 46666766543
No 487
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=92.51 E-value=1.4 Score=54.47 Aligned_cols=38 Identities=29% Similarity=0.623 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHHHHc---CCC---cEEEEccCCCchHHHHHHH
Q 000129 494 TQLNRVQSRVYKSALS---SAD---NILLCAPTGAGKTNVAVLT 531 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~~l~---~~~---nvlv~APTGsGKT~~a~l~ 531 (2114)
..++|+|..++..+.. .++ .+|++||.|.||+..+...
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~l 46 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALAL 46 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHH
Confidence 4678899888876543 322 4899999999999877543
No 488
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=92.49 E-value=0.22 Score=61.41 Aligned_cols=60 Identities=20% Similarity=0.360 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHH
Q 000129 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raL 562 (2114)
..+++.|.+.+..++..+.|++++||||||||.. +-+++..+.... ...++++|-.+.+|
T Consensus 131 g~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~~--------~~~rivtIEd~~El 190 (319)
T PRK13894 131 GIMTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQD--------PTERVFIIEDTGEI 190 (319)
T ss_pred CCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhcC--------CCceEEEEcCCCcc
Confidence 3477899999999999999999999999999954 345555432111 12378888777766
No 489
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=92.47 E-value=0.38 Score=52.10 Aligned_cols=85 Identities=20% Similarity=0.267 Sum_probs=55.5
Q ss_pred EecCCCCHHHHHHHHHHHhCCC-ceEEEechHhhhhcCCCce---EEEEecceeccCCCC-----------------ccc
Q 000129 799 IHHAGMTRGDRQLVEDLFGDGH-VQVLVSTATLAWGVNLPAH---TVIIKGTQIYNPEKG-----------------AWT 857 (2114)
Q Consensus 799 ~hHagl~~~~R~~v~~~F~~g~-i~VLVaT~tla~GVdlP~v---~vVI~~~~~yd~~~g-----------------~~~ 857 (2114)
++.-+....+...+++.|++.. ..||++|..++.|||+|+. .|||. ..||-++.. .|.
T Consensus 26 i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~-glPfp~~~d~~~~~~~~~~~~~~~~~~~~ 104 (141)
T smart00492 26 LLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIID-GLPFPYPDSPILKARLELLRDKGQIRPFD 104 (141)
T ss_pred EEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEE-ecCCCCCCCHHHHHHHHHHHHhCCCCchh
Confidence 3444555556788899998654 3799999889999999985 34454 455532221 111
Q ss_pred c----CCHHHHHHhhcccCCCCCCCceEEEEE
Q 000129 858 E----LSPLDIMQMLGRAGRPQYDSYGEGIII 885 (2114)
Q Consensus 858 ~----~s~~~~~Qr~GRAGR~g~d~~G~~iil 885 (2114)
. .....+.|.+||+-|... ..|..+++
T Consensus 105 ~~~~~~a~~~l~Qa~GR~iR~~~-D~g~i~l~ 135 (141)
T smart00492 105 FVSLPDAMRTLAQCVGRLIRGAN-DYGVVVIA 135 (141)
T ss_pred HHHHHHHHHHHHHHhCccccCcC-ceEEEEEE
Confidence 1 235678899999999654 45655444
No 490
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=92.43 E-value=0.54 Score=56.04 Aligned_cols=140 Identities=22% Similarity=0.285 Sum_probs=73.1
Q ss_pred cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcc---cHHHHHHHHHHHHHHhcCCCCcEEE-EEcCCcc
Q 000129 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP---LEALAKERYRDWEIKFGQGLGMRVV-ELTGETA 1430 (2114)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~P---tr~La~q~~~~~~~~f~~~~g~~v~-~l~G~~~ 1430 (2114)
..++-++|+|+||+|||..+...+.+..... +. +++|+.. ..+++..... ... ++... ...|...
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~--g~--~vly~s~E~~~~~~~~r~~~----~~~---~~~~~~~~~~~~~ 79 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQ--GK--PVLFFSLEMSKEQLLQRLLA----SES---GISLSKLRTGSLS 79 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhC--CC--ceEEEeCCCCHHHHHHHHHH----Hhc---CCCHHHHhcCCCC
Confidence 3467799999999999988766666555441 22 7788763 3333333221 111 11111 0111111
Q ss_pred c-c-------hhhccCCcEEE-----EChhhHHHHHhhhcccccccceeEEEecccccccCCC-----CchHHHHHHHHH
Q 000129 1431 M-D-------LKLLEKGQIII-----STPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-----GPVLEVIVSRMR 1492 (2114)
Q Consensus 1431 ~-~-------~~~l~~~~IIV-----~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~-----g~~le~i~srl~ 1492 (2114)
. . ...+....+.+ .|++.+...++..... .++++||||=++.+.... ...+..++.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~---~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~ 156 (242)
T cd00984 80 DEDWERLAEAIGELKELPIYIDDSSSLTVSDIRSRARRLKKE---HGLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLK 156 (242)
T ss_pred HHHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHh---cCCCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHH
Confidence 1 0 11122334444 2445554444442211 278999999999774321 123445667777
Q ss_pred HHHhhcCCCceEEEEccc
Q 000129 1493 YIASQVENKIRIVALSTS 1510 (2114)
Q Consensus 1493 ~i~~~~~~~~riV~lSAT 1510 (2114)
.++.++ ++-++++|-.
T Consensus 157 ~la~~~--~~~ii~~~q~ 172 (242)
T cd00984 157 LLAKEL--NVPVIALSQL 172 (242)
T ss_pred HHHHHh--CCeEEEeccc
Confidence 666543 5666776643
No 491
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.39 E-value=0.98 Score=57.31 Aligned_cols=41 Identities=22% Similarity=0.473 Sum_probs=25.1
Q ss_pred ccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEc
Q 000129 620 YTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (2114)
Q Consensus 620 ~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lS 667 (2114)
.....+++||||+|.+.. ...+. +++.++..+..+++|+.+
T Consensus 116 ~~~~~kviIIDEa~~l~~---~a~na----LLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 116 SKSRFKVYLIDEVHMLSR---HSFNA----LLKTLEEPPQHIKFILAT 156 (363)
T ss_pred ccCCceEEEEEChhhcCH---HHHHH----HHHHHhcCCCCeEEEEEc
Confidence 345678999999999853 12232 344445555566666654
No 492
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.38 E-value=0.86 Score=60.26 Aligned_cols=40 Identities=23% Similarity=0.512 Sum_probs=26.2
Q ss_pred cccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEc
Q 000129 621 TQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (2114)
Q Consensus 621 l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lS 667 (2114)
....+++||||+|+|.. ... ..+++.++....++.+|+.|
T Consensus 122 ~gr~KViIIDEah~Ls~---~Aa----NALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTN---HAF----NAMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred cCCceEEEEEChHhcCH---HHH----HHHHHhhccCCCCceEEEEe
Confidence 45678999999999863 122 33455556655667666654
No 493
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=92.37 E-value=0.25 Score=68.44 Aligned_cols=109 Identities=19% Similarity=0.123 Sum_probs=72.5
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhc-cCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000129 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA-SETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~-~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~ 1418 (2114)
..|||-|.+|+.. ...+++|.|..|||||.+..--+...+... -+.. ++++|+.|+..|.++.+++.+.++..
T Consensus 3 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~--~IL~lTFTnkAA~em~~Rl~~~~~~~- 76 (715)
T TIGR01075 3 DGLNDKQREAVAA---PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPH--SIMAVTFTNKAAAEMRHRIGALLGTS- 76 (715)
T ss_pred cccCHHHHHHHcC---CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHH--HeEeeeccHHHHHHHHHHHHHHhccc-
Confidence 4699999999864 356799999999999988766655555431 1223 89999999999999988887544310
Q ss_pred CcEEEEEcCCcccchhhccCCcEEEEChhhHH-HHHhhhcccccccceeEEEecccc
Q 000129 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWD-ALSRRWKQRKYVQQVSLFIIDELH 1474 (2114)
Q Consensus 1419 g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~-~l~r~~~~~~~l~~v~liIiDEaH 1474 (2114)
...+.|+|-..|. .++|+......+. -.+-|+|+.+
T Consensus 77 -------------------~~~~~i~TfHs~~~~iLr~~~~~~g~~-~~f~i~d~~d 113 (715)
T TIGR01075 77 -------------------ARGMWIGTFHGLAHRLLRAHHLDAGLP-QDFQILDSDD 113 (715)
T ss_pred -------------------ccCcEEEcHHHHHHHHHHHHHHHhCCC-CCCeecCHHH
Confidence 1246788888764 3555422111111 1245677765
No 494
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=92.37 E-value=0.62 Score=56.86 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=16.0
Q ss_pred cEEEEccCCCchHHHHHH
Q 000129 513 NILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 513 nvlv~APTGsGKT~~a~l 530 (2114)
++++.||+|+|||.+|..
T Consensus 60 ~vll~G~pGTGKT~lA~~ 77 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALR 77 (284)
T ss_pred eEEEEcCCCCCHHHHHHH
Confidence 699999999999998844
No 495
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=92.36 E-value=0.94 Score=58.26 Aligned_cols=38 Identities=29% Similarity=0.437 Sum_probs=25.2
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEc
Q 000129 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~ 1397 (2114)
..+++|.||+|+|||.+.- .+++.+.... ....++|+-
T Consensus 55 ~~~~lI~G~~GtGKT~l~~-~v~~~l~~~~--~~~~~v~in 92 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVK-KVFEELEEIA--VKVVYVYIN 92 (394)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHHhc--CCcEEEEEE
Confidence 3679999999999998763 4445554421 123667763
No 496
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=92.35 E-value=0.26 Score=60.64 Aligned_cols=59 Identities=24% Similarity=0.406 Sum_probs=44.1
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHH
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raL 562 (2114)
.+++.|.+.+..++..+.|+|++||||||||... -+++..+.... ...+++.+-...+|
T Consensus 128 ~~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~~--------~~~rivtiEd~~El 186 (323)
T PRK13833 128 IMTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVASA--------PEDRLVILEDTAEI 186 (323)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcCC--------CCceEEEecCCccc
Confidence 4788999999999999999999999999999864 44555543211 12377877777776
No 497
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=92.35 E-value=0.56 Score=62.61 Aligned_cols=30 Identities=30% Similarity=0.450 Sum_probs=21.1
Q ss_pred HHHHHHcCCC---cEEEEccCCCchHHHHHHHH
Q 000129 503 VYKSALSSAD---NILLCAPTGAGKTNVAVLTI 532 (2114)
Q Consensus 503 ~i~~~l~~~~---nvlv~APTGsGKT~~a~l~i 532 (2114)
.+..++..++ .+|++||.|+|||.++....
T Consensus 27 ~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLA 59 (709)
T PRK08691 27 ALQNALDEGRLHHAYLLTGTRGVGKTTIARILA 59 (709)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHH
Confidence 3444455443 58999999999999876543
No 498
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=92.34 E-value=5.6 Score=60.63 Aligned_cols=213 Identities=12% Similarity=0.168 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHh
Q 000129 495 QLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~ 573 (2114)
.|++-|.+++..++.+ +.-.+|.++.|+|||.+ +-+++..+... +.+++.++|+-.-+..+.+.....
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~~~----------G~~V~~lAPTgrAA~~L~e~~g~~ 497 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLASEQ----------GYEIQIITAGSLSAQELRQKIPRL 497 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHHhc----------CCeEEEEeCCHHHHHHHHHHhcch
Q ss_pred hccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCC----------cccccccEEEEecccccccCCchhH
Q 000129 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDR----------TYTQLVKLLIIDEIHLLHDNRGPVL 643 (2114)
Q Consensus 574 ~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~----------~~l~~v~liIiDEaH~l~d~rg~~l 643 (2114)
.. |-.+|.......... ..+..-++|||||+-++. ...+
T Consensus 498 A~----------------------------Ti~~~l~~l~~~~~~~tv~~fl~~~~~l~~~~vlIVDEAsMl~---~~~~ 546 (1960)
T TIGR02760 498 AS----------------------------TFITWVKNLFNDDQDHTVQGLLDKSSPFSNKDIFVVDEANKLS---NNEL 546 (1960)
T ss_pred hh----------------------------hHHHHHHhhcccccchhHHHhhcccCCCCCCCEEEEECCCCCC---HHHH
Q ss_pred HHHHHHHHHHHhhccccccEEEEccc--cCC--hHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHh
Q 000129 644 ESIVARTVRQIETTKEHIRLVGLSAT--LPN--YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLM 719 (2114)
Q Consensus 644 e~iv~rl~~~~~~~~~~~riv~lSAT--lpn--~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~ 719 (2114)
..++... ...+.|+|++-=+ +|. +..+-.-+..........-...-...++ .+.......+...+
T Consensus 547 ~~Ll~~a------~~~garvVlvGD~~QL~sV~aG~~f~~L~~~gv~t~~l~~i~rq~~~v-----~i~~~~~~~r~~~i 615 (1960)
T TIGR02760 547 LKLIDKA------EQHNSKLILLNDSAQRQGMSAGSAIDLLKEGGVTTYAWVDTKQQKASV-----EISEAVDKLRVDYI 615 (1960)
T ss_pred HHHHHHH------hhcCCEEEEEcChhhcCccccchHHHHHHHCCCcEEEeecccccCcce-----eeeccCchHHHHHH
Q ss_pred hHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhccccc
Q 000129 720 NDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTL 763 (2114)
Q Consensus 720 ~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l 763 (2114)
.+....... ....++|+..+.++...+...++........+
T Consensus 616 a~~y~~L~~---~r~~tliv~~t~~dr~~Ln~~iR~~L~~~G~L 656 (1960)
T TIGR02760 616 ASAWLDLTP---DRQNSQVLATTHREQQDLTQIIRNALKQEGQL 656 (1960)
T ss_pred HHHHHhccc---ccCceEEEcCCcHHHHHHHHHHHHHHHHcCCc
No 499
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=92.32 E-value=0.54 Score=60.69 Aligned_cols=44 Identities=20% Similarity=0.345 Sum_probs=29.0
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHH
Q 000129 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q 1405 (2114)
..+++.||+|+|||..+ .++.+.+....++. +++|+.. ..+..+
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~~~~~--~v~yi~~-~~~~~~ 180 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILENNPNA--KVVYVSS-EKFTND 180 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHhCCCC--cEEEEEH-HHHHHH
Confidence 35899999999999877 56666665532233 7788753 334333
No 500
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=92.31 E-value=0.78 Score=57.79 Aligned_cols=134 Identities=21% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHcCC--CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEE-cccHHHHHHHHHHHHHHhcCCCCcEEE
Q 000129 1347 TQVFTVLYNTD--DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYI-APLEALAKERYRDWEIKFGQGLGMRVV 1423 (2114)
Q Consensus 1347 ~q~~~~il~~~--~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I-~Ptr~La~q~~~~~~~~f~~~~g~~v~ 1423 (2114)
..++..++.+. .|++|-||||+|||.+. ..+++.+....... -++|| +..-.--.|++..+.+.++
T Consensus 30 ~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~-~~v~~~l~~~~~~~--~~~yINc~~~~t~~~i~~~i~~~~~-------- 98 (366)
T COG1474 30 ASFLAPALRGERPSNIIIYGPTGTGKTATV-KFVMEELEESSANV--EVVYINCLELRTPYQVLSKILNKLG-------- 98 (366)
T ss_pred HHHHHHHhcCCCCccEEEECCCCCCHhHHH-HHHHHHHHhhhccC--ceEEEeeeeCCCHHHHHHHHHHHcC--------
Q ss_pred EEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCce
Q 000129 1424 ELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIR 1503 (2114)
Q Consensus 1424 ~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~r 1503 (2114)
.-...-..+-+.+..+... .......-+||+||++.|.+..+ +.+..-++.-... ...+-
T Consensus 99 -------------~~p~~g~~~~~~~~~l~~~---~~~~~~~~IvvLDEid~L~~~~~---~~LY~L~r~~~~~-~~~v~ 158 (366)
T COG1474 99 -------------KVPLTGDSSLEILKRLYDN---LSKKGKTVIVILDEVDALVDKDG---EVLYSLLRAPGEN-KVKVS 158 (366)
T ss_pred -------------CCCCCCCchHHHHHHHHHH---HHhcCCeEEEEEcchhhhccccc---hHHHHHHhhcccc-ceeEE
Q ss_pred EEEEcccC
Q 000129 1504 IVALSTSL 1511 (2114)
Q Consensus 1504 iV~lSATl 1511 (2114)
+|+.+-++
T Consensus 159 vi~i~n~~ 166 (366)
T COG1474 159 IIAVSNDD 166 (366)
T ss_pred EEEEeccH
Done!