Query 000129
Match_columns 2114
No_of_seqs 1293 out of 7539
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 18:28:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000129.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000129hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f92_B U5 small nuclear ribonu 100.0 2E-285 6E-290 3013.7 172.2 1678 418-2107 2-1724(1724)
2 4f92_B U5 small nuclear ribonu 100.0 9E-111 3E-115 1205.3 82.9 802 477-1301 906-1723(1724)
3 2va8_A SSO2462, SKI2-type heli 100.0 9.5E-81 3.3E-85 851.2 55.1 656 482-1199 15-714 (715)
4 2p6r_A Afuhel308 helicase; pro 100.0 3.6E-81 1.2E-85 852.3 49.9 653 482-1204 10-692 (702)
5 2zj8_A DNA helicase, putative 100.0 4E-80 1.4E-84 844.4 55.6 651 481-1193 7-695 (720)
6 2zj8_A DNA helicase, putative 100.0 1.1E-72 3.6E-77 771.2 52.6 625 1338-1994 20-704 (720)
7 2p6r_A Afuhel308 helicase; pro 100.0 1.2E-72 4.1E-77 768.4 50.1 616 1338-2000 22-692 (702)
8 2va8_A SSO2462, SKI2-type heli 100.0 3.5E-70 1.2E-74 746.8 56.8 622 1338-1995 27-714 (715)
9 3im1_A Protein SNU246, PRE-mRN 100.0 1.9E-62 6.6E-67 601.7 39.4 323 1780-2109 4-328 (328)
10 2q0z_X Protein Pro2281; SEC63, 100.0 7.4E-62 2.5E-66 598.6 39.0 323 1783-2112 11-333 (339)
11 2q0z_X Protein Pro2281; SEC63, 100.0 3.4E-53 1.2E-57 521.5 29.5 307 991-1303 10-329 (339)
12 3im1_A Protein SNU246, PRE-mRN 100.0 2.2E-52 7.4E-57 512.6 28.7 306 991-1302 6-326 (328)
13 3l9o_A ATP-dependent RNA helic 100.0 6.4E-42 2.2E-46 478.0 34.6 395 492-917 181-627 (1108)
14 2xgj_A ATP-dependent RNA helic 100.0 2.2E-41 7.6E-46 468.7 37.5 388 492-917 84-529 (1010)
15 3i5x_A ATP-dependent RNA helic 100.0 4.4E-41 1.5E-45 447.9 38.2 368 476-898 73-458 (563)
16 2db3_A ATP-dependent RNA helic 100.0 1.1E-39 3.9E-44 418.9 40.0 337 481-889 62-407 (434)
17 3sqw_A ATP-dependent RNA helic 100.0 1.5E-39 5.2E-44 433.3 39.2 383 460-898 6-407 (579)
18 4a4z_A Antiviral helicase SKI2 100.0 2.5E-39 8.5E-44 448.4 35.6 381 495-910 39-516 (997)
19 3i5x_A ATP-dependent RNA helic 100.0 4.8E-39 1.6E-43 428.3 34.6 368 1327-1742 79-463 (563)
20 2xgj_A ATP-dependent RNA helic 100.0 1.1E-38 3.6E-43 441.9 39.2 364 1339-1737 85-509 (1010)
21 3l9o_A ATP-dependent RNA helic 100.0 5E-39 1.7E-43 448.8 35.6 373 1339-1737 182-607 (1108)
22 2db3_A ATP-dependent RNA helic 100.0 2.8E-38 9.5E-43 406.0 39.8 334 1326-1728 62-407 (434)
23 3fht_A ATP-dependent RNA helic 100.0 3.3E-38 1.1E-42 403.4 38.7 342 481-890 31-380 (412)
24 2i4i_A ATP-dependent RNA helic 100.0 1.5E-38 5.2E-43 407.4 35.0 351 481-895 21-389 (417)
25 3fht_A ATP-dependent RNA helic 100.0 6.1E-38 2.1E-42 401.0 40.4 363 1310-1737 15-389 (412)
26 2j0s_A ATP-dependent RNA helic 100.0 4.4E-38 1.5E-42 402.2 35.4 340 481-896 43-390 (410)
27 3pey_A ATP-dependent RNA helic 100.0 1.3E-37 4.4E-42 395.4 38.6 346 482-895 12-362 (395)
28 3pey_A ATP-dependent RNA helic 100.0 2.6E-37 9E-42 392.5 39.9 357 1326-1748 11-377 (395)
29 2j0s_A ATP-dependent RNA helic 100.0 2.1E-37 7.1E-42 396.0 38.6 348 1324-1740 41-395 (410)
30 4a4z_A Antiviral helicase SKI2 100.0 7.9E-38 2.7E-42 433.5 35.5 365 1341-1737 39-503 (997)
31 1s2m_A Putative ATP-dependent 100.0 2.4E-37 8.2E-42 394.1 37.1 338 482-897 28-373 (400)
32 3fmp_B ATP-dependent RNA helic 100.0 4.6E-39 1.6E-43 419.7 21.0 349 481-895 98-452 (479)
33 2i4i_A ATP-dependent RNA helic 100.0 3.2E-37 1.1E-41 395.1 37.7 347 1327-1740 22-395 (417)
34 3fmp_B ATP-dependent RNA helic 100.0 5.9E-39 2E-43 418.7 21.7 354 1311-1729 83-447 (479)
35 3eiq_A Eukaryotic initiation f 100.0 9.4E-38 3.2E-42 399.6 29.7 340 481-897 46-395 (414)
36 1s2m_A Putative ATP-dependent 100.0 2.1E-36 7.1E-41 385.4 41.6 345 1326-1740 27-377 (400)
37 2xau_A PRE-mRNA-splicing facto 100.0 6.8E-38 2.3E-42 424.3 29.4 469 482-1052 79-564 (773)
38 1xti_A Probable ATP-dependent 100.0 7.2E-37 2.5E-41 388.3 36.3 337 481-894 14-362 (391)
39 3sqw_A ATP-dependent RNA helic 100.0 6.2E-37 2.1E-41 408.2 37.0 366 1327-1740 28-410 (579)
40 3eiq_A Eukaryotic initiation f 100.0 3.3E-37 1.1E-41 394.5 32.6 351 1324-1741 44-400 (414)
41 1hv8_A Putative ATP-dependent 100.0 9.7E-37 3.3E-41 383.2 35.4 335 482-896 13-352 (367)
42 2v1x_A ATP-dependent DNA helic 100.0 4.9E-37 1.7E-41 405.2 31.7 336 483-899 29-384 (591)
43 3fho_A ATP-dependent RNA helic 100.0 2.7E-38 9.3E-43 413.8 18.7 403 1266-1737 68-480 (508)
44 1hv8_A Putative ATP-dependent 100.0 2.7E-36 9.2E-41 379.2 35.4 339 1327-1740 13-357 (367)
45 1xti_A Probable ATP-dependent 100.0 1.8E-35 6.3E-40 375.3 41.3 341 1328-1737 16-367 (391)
46 2z0m_A 337AA long hypothetical 100.0 4.2E-36 1.4E-40 372.9 34.1 324 482-896 1-329 (337)
47 2xau_A PRE-mRNA-splicing facto 100.0 4.6E-36 1.6E-40 406.4 34.8 455 1327-1840 79-561 (773)
48 2v1x_A ATP-dependent DNA helic 100.0 3.9E-36 1.3E-40 396.6 32.3 328 1332-1737 36-383 (591)
49 3fho_A ATP-dependent RNA helic 100.0 1.8E-37 6.2E-42 406.0 18.5 338 481-889 125-470 (508)
50 1fuu_A Yeast initiation factor 100.0 2.1E-37 7.1E-42 393.6 17.5 339 481-896 27-373 (394)
51 1fuu_A Yeast initiation factor 100.0 9.2E-37 3.2E-41 387.6 18.7 343 1327-1737 28-375 (394)
52 1oyw_A RECQ helicase, ATP-depe 100.0 1.2E-35 4.1E-40 388.5 29.5 328 483-900 10-354 (523)
53 2z0m_A 337AA long hypothetical 100.0 4.3E-35 1.5E-39 363.8 32.1 315 1338-1737 13-331 (337)
54 1oyw_A RECQ helicase, ATP-depe 100.0 2.7E-35 9.1E-40 385.2 31.5 328 1332-1738 17-353 (523)
55 3oiy_A Reverse gyrase helicase 100.0 9E-35 3.1E-39 372.1 28.8 331 481-899 9-376 (414)
56 3oiy_A Reverse gyrase helicase 100.0 1.3E-33 4.6E-38 361.2 33.4 317 1339-1739 20-374 (414)
57 4a2p_A RIG-I, retinoic acid in 100.0 3.6E-33 1.2E-37 371.3 30.1 350 493-892 5-511 (556)
58 4a2p_A RIG-I, retinoic acid in 100.0 2.6E-33 8.8E-38 372.7 27.0 349 1339-1730 5-510 (556)
59 3tbk_A RIG-I helicase domain; 100.0 4.2E-33 1.4E-37 370.5 26.6 345 495-893 4-511 (555)
60 3tbk_A RIG-I helicase domain; 100.0 3.5E-32 1.2E-36 361.6 32.0 346 1341-1732 4-511 (555)
61 2ykg_A Probable ATP-dependent 100.0 4.9E-32 1.7E-36 370.1 29.8 353 491-892 9-519 (696)
62 4a2q_A RIG-I, retinoic acid in 100.0 1.9E-31 6.4E-36 367.7 34.7 348 1338-1730 245-751 (797)
63 4a2q_A RIG-I, retinoic acid in 100.0 4.5E-32 1.5E-36 373.8 26.0 345 491-891 244-751 (797)
64 2ykg_A Probable ATP-dependent 100.0 1E-31 3.5E-36 366.9 29.4 351 1338-1731 10-519 (696)
65 1gm5_A RECG; helicase, replica 100.0 2.5E-32 8.5E-37 366.7 20.4 315 491-888 365-696 (780)
66 4gl2_A Interferon-induced heli 100.0 1E-31 3.5E-36 367.1 24.9 339 495-889 7-519 (699)
67 1gm5_A RECG; helicase, replica 100.0 1E-31 3.6E-36 360.7 23.2 320 1338-1734 366-703 (780)
68 1gku_B Reverse gyrase, TOP-RG; 100.0 1.4E-31 4.7E-36 374.7 22.0 323 1338-1741 55-467 (1054)
69 4a2w_A RIG-I, retinoic acid in 100.0 2.1E-30 7.1E-35 360.4 32.1 348 1338-1730 245-751 (936)
70 1wp9_A ATP-dependent RNA helic 100.0 5.1E-30 1.7E-34 334.4 33.5 327 1341-1730 9-477 (494)
71 1wp9_A ATP-dependent RNA helic 100.0 2.1E-30 7.3E-35 337.9 29.7 327 495-891 9-477 (494)
72 4a2w_A RIG-I, retinoic acid in 100.0 1.2E-30 4.1E-35 362.7 28.7 347 491-891 244-751 (936)
73 2eyq_A TRCF, transcription-rep 100.0 6.9E-30 2.4E-34 359.3 36.6 310 491-889 600-922 (1151)
74 4ddu_A Reverse gyrase; topoiso 100.0 7.3E-31 2.5E-35 366.6 26.4 278 491-848 75-387 (1104)
75 4gl2_A Interferon-induced heli 100.0 6.3E-31 2.1E-35 359.3 24.8 339 1341-1729 7-520 (699)
76 1gku_B Reverse gyrase, TOP-RG; 100.0 9.7E-32 3.3E-36 376.3 16.8 280 491-848 54-352 (1054)
77 4ddu_A Reverse gyrase; topoiso 100.0 1.6E-30 5.5E-35 363.2 28.2 272 1338-1682 76-382 (1104)
78 2eyq_A TRCF, transcription-rep 100.0 1.5E-29 5E-34 356.0 35.4 308 1339-1729 602-923 (1151)
79 1tf5_A Preprotein translocase 100.0 3.1E-30 1.1E-34 337.5 25.2 350 491-916 80-584 (844)
80 2jlq_A Serine protease subunit 100.0 3.6E-31 1.2E-35 340.7 13.8 300 492-888 1-310 (451)
81 3rc3_A ATP-dependent RNA helic 100.0 3.1E-30 1.1E-34 341.4 21.6 298 511-906 155-462 (677)
82 2oca_A DAR protein, ATP-depend 100.0 1.6E-29 5.4E-34 332.4 26.8 306 493-876 111-444 (510)
83 2jlq_A Serine protease subunit 100.0 1.1E-30 3.9E-35 336.1 14.7 301 1338-1728 1-311 (451)
84 2oca_A DAR protein, ATP-depend 100.0 2.8E-29 9.6E-34 330.1 27.1 305 1340-1714 112-443 (510)
85 1tf5_A Preprotein translocase 100.0 4.9E-29 1.7E-33 326.3 24.4 328 1338-1729 81-546 (844)
86 2fsf_A Preprotein translocase 100.0 2.2E-28 7.7E-33 318.8 28.5 352 492-916 72-622 (853)
87 2fwr_A DNA repair protein RAD2 100.0 3.4E-29 1.2E-33 326.0 16.7 302 1341-1729 93-455 (472)
88 2whx_A Serine protease/ntpase/ 100.0 1.3E-29 4.3E-34 335.4 12.1 298 493-887 169-476 (618)
89 2z83_A Helicase/nucleoside tri 100.0 2E-29 6.9E-34 324.9 13.2 289 505-889 15-313 (459)
90 1yks_A Genome polyprotein [con 100.0 3.2E-29 1.1E-33 321.0 14.6 272 507-886 4-296 (440)
91 2fwr_A DNA repair protein RAD2 100.0 4.6E-29 1.6E-33 324.8 16.3 302 494-890 92-455 (472)
92 1nkt_A Preprotein translocase 100.0 1.5E-27 5E-32 310.8 29.8 355 491-915 108-655 (922)
93 3o8b_A HCV NS3 protease/helica 100.0 4E-29 1.4E-33 326.1 14.3 284 500-890 221-515 (666)
94 1yks_A Genome polyprotein [con 100.0 1.1E-28 3.6E-33 316.2 17.3 277 1354-1725 5-296 (440)
95 2wv9_A Flavivirin protease NS2 100.0 2.2E-29 7.5E-34 334.7 11.0 290 495-886 215-530 (673)
96 2whx_A Serine protease/ntpase/ 100.0 1E-28 3.4E-33 326.8 16.9 299 1339-1726 169-476 (618)
97 2fsf_A Preprotein translocase 100.0 1.7E-27 5.6E-32 310.7 27.2 325 1341-1729 74-584 (853)
98 2wv9_A Flavivirin protease NS2 100.0 4.7E-29 1.6E-33 331.6 12.7 296 1341-1725 215-530 (673)
99 3rc3_A ATP-dependent RNA helic 100.0 6.6E-28 2.3E-32 319.3 23.2 291 1356-1737 154-453 (677)
100 2z83_A Helicase/nucleoside tri 100.0 8.4E-29 2.9E-33 319.2 13.9 289 1351-1728 15-313 (459)
101 3h1t_A Type I site-specific re 100.0 1.3E-27 4.3E-32 319.5 25.2 327 494-885 177-555 (590)
102 2v6i_A RNA helicase; membrane, 99.9 6.5E-28 2.2E-32 308.3 17.8 281 511-887 2-289 (431)
103 1nkt_A Preprotein translocase 99.9 6.6E-27 2.3E-31 304.7 26.8 334 1338-1730 109-619 (922)
104 2v6i_A RNA helicase; membrane, 99.9 4E-27 1.4E-31 301.0 24.3 281 1357-1725 2-288 (431)
105 3h1t_A Type I site-specific re 99.9 3.5E-27 1.2E-31 315.3 22.6 329 1340-1725 177-556 (590)
106 3o8b_A HCV NS3 protease/helica 99.9 5.5E-28 1.9E-32 315.5 13.6 284 1346-1729 221-515 (666)
107 3dmq_A RNA polymerase-associat 99.9 4.5E-24 1.5E-28 297.0 30.4 328 494-890 152-616 (968)
108 1z63_A Helicase of the SNF2/RA 99.9 3.3E-23 1.1E-27 271.5 30.9 323 1340-1729 36-454 (500)
109 3dmq_A RNA polymerase-associat 99.9 1.4E-23 4.7E-28 292.1 28.3 332 1340-1729 152-616 (968)
110 1z63_A Helicase of the SNF2/RA 99.9 5.1E-23 1.7E-27 269.8 28.2 324 494-891 36-455 (500)
111 3ly5_A ATP-dependent RNA helic 99.9 9.7E-24 3.3E-28 251.9 19.2 226 1285-1519 7-251 (262)
112 3ly5_A ATP-dependent RNA helic 99.9 1.4E-23 4.7E-28 250.6 18.5 186 482-682 61-252 (262)
113 3fmo_B ATP-dependent RNA helic 99.9 5.9E-23 2E-27 249.6 21.9 195 1318-1521 90-288 (300)
114 3fe2_A Probable ATP-dependent 99.9 6.1E-23 2.1E-27 242.3 19.4 188 481-683 35-228 (242)
115 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 4.6E-22 1.6E-26 273.7 30.7 349 495-886 271-706 (1038)
116 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 6.4E-22 2.2E-26 272.3 32.2 366 1341-1743 271-722 (1038)
117 3fmo_B ATP-dependent RNA helic 99.9 5.8E-23 2E-27 249.7 18.6 186 481-683 98-288 (300)
118 3jux_A Protein translocase sub 99.9 5.9E-21 2E-25 243.4 35.3 346 495-915 75-625 (822)
119 3ber_A Probable ATP-dependent 99.9 9.9E-23 3.4E-27 241.3 17.5 182 482-682 50-237 (249)
120 3iuy_A Probable ATP-dependent 99.9 1.8E-22 6.3E-27 236.0 19.2 192 481-687 26-223 (228)
121 3dkp_A Probable ATP-dependent 99.9 1.1E-22 3.7E-27 240.7 17.1 194 481-687 35-235 (245)
122 1q0u_A Bstdead; DEAD protein, 99.9 1.2E-22 4.2E-27 235.9 17.0 188 482-689 11-208 (219)
123 1vec_A ATP-dependent RNA helic 99.9 3.7E-22 1.3E-26 229.4 20.0 183 481-683 9-198 (206)
124 2oxc_A Probable ATP-dependent 99.9 4E-22 1.4E-26 233.4 19.8 183 482-684 31-220 (230)
125 3fe2_A Probable ATP-dependent 99.9 4.1E-22 1.4E-26 235.2 19.5 185 1327-1521 36-228 (242)
126 1wrb_A DJVLGB; RNA helicase, D 99.9 4.2E-22 1.4E-26 236.8 19.1 192 482-681 30-228 (253)
127 2pl3_A Probable ATP-dependent 99.9 6.5E-22 2.2E-26 232.6 20.0 186 482-683 32-223 (236)
128 1vec_A ATP-dependent RNA helic 99.9 1.5E-21 5.1E-26 224.4 21.3 176 1327-1513 10-189 (206)
129 3iuy_A Probable ATP-dependent 99.9 9.2E-22 3.1E-26 230.0 19.2 181 1328-1519 28-217 (228)
130 2oxc_A Probable ATP-dependent 99.9 1.3E-21 4.3E-26 229.2 19.7 183 1327-1522 31-217 (230)
131 1qde_A EIF4A, translation init 99.9 1.5E-21 5E-26 227.6 19.6 179 482-681 21-205 (224)
132 1qde_A EIF4A, translation init 99.9 1.7E-21 5.9E-26 227.0 20.0 181 1327-1519 21-205 (224)
133 1q0u_A Bstdead; DEAD protein, 99.9 1.6E-21 5.6E-26 226.4 19.6 175 1327-1513 11-193 (219)
134 3dkp_A Probable ATP-dependent 99.9 8.6E-22 2.9E-26 233.0 17.5 188 1327-1522 36-229 (245)
135 3ber_A Probable ATP-dependent 99.9 1.2E-21 4.1E-26 232.0 18.4 184 1327-1521 50-238 (249)
136 3bor_A Human initiation factor 99.9 1.1E-21 3.7E-26 230.8 17.4 179 482-681 37-223 (237)
137 1wrb_A DJVLGB; RNA helicase, D 99.9 3.9E-21 1.3E-25 228.4 22.0 176 1337-1521 41-230 (253)
138 3bor_A Human initiation factor 99.9 3.2E-21 1.1E-25 226.8 18.6 181 1327-1519 37-223 (237)
139 2pl3_A Probable ATP-dependent 99.9 6.4E-21 2.2E-25 224.1 21.1 186 1327-1521 32-223 (236)
140 1t6n_A Probable ATP-dependent 99.9 5E-21 1.7E-25 222.5 20.0 184 1326-1520 20-210 (220)
141 2gxq_A Heat resistant RNA depe 99.9 4.4E-21 1.5E-25 220.6 18.6 174 482-672 8-187 (207)
142 1z3i_X Similar to RAD54-like; 99.9 1E-19 3.5E-24 243.9 34.5 328 495-890 55-529 (644)
143 1t6n_A Probable ATP-dependent 99.9 4.2E-21 1.4E-25 223.1 17.4 175 482-672 21-202 (220)
144 3mwy_W Chromo domain-containin 99.8 5.1E-20 1.7E-24 253.0 29.0 326 494-891 235-686 (800)
145 3mwy_W Chromo domain-containin 99.8 6.6E-20 2.2E-24 251.9 29.3 326 1340-1729 235-685 (800)
146 2gxq_A Heat resistant RNA depe 99.8 1.5E-20 5E-25 216.2 18.7 183 1328-1522 9-197 (207)
147 3jux_A Protein translocase sub 99.8 1.8E-19 6E-24 230.0 29.6 322 1341-1729 75-588 (822)
148 1z3i_X Similar to RAD54-like; 99.8 2.6E-19 8.9E-24 239.9 32.6 329 1340-1729 54-529 (644)
149 1c4o_A DNA nucleotide excision 99.8 2.8E-19 9.4E-24 239.2 32.3 214 1462-1734 323-556 (664)
150 1c4o_A DNA nucleotide excision 99.8 1.9E-19 6.7E-24 240.7 30.1 118 732-894 438-555 (664)
151 2ipc_A Preprotein translocase 99.8 9.1E-18 3.1E-22 217.9 32.9 131 491-636 76-215 (997)
152 2d7d_A Uvrabc system protein B 99.8 7.8E-18 2.7E-22 225.1 32.7 213 1465-1734 332-562 (661)
153 2d7d_A Uvrabc system protein B 99.8 2.3E-17 8E-22 220.5 30.6 122 727-893 438-560 (661)
154 2ipc_A Preprotein translocase 99.7 4.1E-16 1.4E-20 202.6 30.7 130 1338-1477 77-215 (997)
155 2vl7_A XPD; helicase, unknown 99.7 1.1E-16 3.9E-21 210.0 25.9 127 491-636 4-188 (540)
156 3b6e_A Interferon-induced heli 99.7 2E-17 6.9E-22 191.1 14.9 169 492-669 30-216 (216)
157 2hjv_A ATP-dependent RNA helic 99.7 6.9E-17 2.3E-21 178.2 18.1 144 697-897 7-150 (163)
158 2rb4_A ATP-dependent RNA helic 99.7 4E-17 1.4E-21 182.3 16.2 125 730-897 31-155 (175)
159 3eaq_A Heat resistant RNA depe 99.7 6.9E-17 2.4E-21 186.0 17.7 120 729-897 27-146 (212)
160 3llm_A ATP-dependent RNA helic 99.7 5.4E-17 1.8E-21 190.4 17.1 171 1341-1525 61-231 (235)
161 1rif_A DAR protein, DNA helica 99.7 2.5E-17 8.7E-22 198.8 13.2 153 495-673 113-265 (282)
162 3b6e_A Interferon-induced heli 99.7 3.3E-17 1.1E-21 189.3 13.5 167 1339-1510 31-216 (216)
163 3eaq_A Heat resistant RNA depe 99.7 2E-16 7E-21 182.1 20.0 124 1572-1742 29-152 (212)
164 1t5i_A C_terminal domain of A 99.7 5.6E-17 1.9E-21 180.5 13.0 114 729-891 27-140 (172)
165 2fz4_A DNA repair protein RAD2 99.7 1.4E-17 4.7E-22 195.3 8.5 199 427-673 25-231 (237)
166 1fuk_A Eukaryotic initiation f 99.7 1.4E-16 4.7E-21 176.2 15.5 120 729-897 26-145 (165)
167 2rb4_A ATP-dependent RNA helic 99.7 1.8E-16 6.1E-21 177.1 16.5 123 1573-1742 33-161 (175)
168 1rif_A DAR protein, DNA helica 99.7 1.4E-16 4.8E-21 192.3 16.7 154 1341-1515 113-266 (282)
169 2hjv_A ATP-dependent RNA helic 99.7 2.3E-16 8E-21 173.9 17.0 122 1572-1740 33-154 (163)
170 2jgn_A DBX, DDX3, ATP-dependen 99.7 1.6E-16 5.5E-21 178.8 13.5 143 698-896 18-160 (185)
171 1fuk_A Eukaryotic initiation f 99.7 4.1E-16 1.4E-20 172.3 14.7 123 1572-1741 28-150 (165)
172 3llm_A ATP-dependent RNA helic 99.7 9E-16 3.1E-20 180.0 17.4 168 495-683 61-230 (235)
173 2vl7_A XPD; helicase, unknown 99.7 6.1E-15 2.1E-19 193.6 27.0 126 1338-1477 5-188 (540)
174 3i32_A Heat resistant RNA depe 99.7 5.1E-16 1.7E-20 187.1 15.2 119 729-896 24-142 (300)
175 3i32_A Heat resistant RNA depe 99.6 1.4E-15 4.7E-20 183.4 18.4 124 1572-1742 26-149 (300)
176 3crv_A XPD/RAD3 related DNA he 99.6 4.7E-15 1.6E-19 195.5 24.6 341 1341-1737 3-541 (551)
177 1t5i_A C_terminal domain of A 99.6 7.4E-16 2.5E-20 171.4 14.0 119 1572-1737 29-148 (172)
178 2jgn_A DBX, DDX3, ATP-dependen 99.6 5.7E-16 1.9E-20 174.3 13.0 122 1572-1740 44-165 (185)
179 3crv_A XPD/RAD3 related DNA he 99.6 1E-14 3.5E-19 192.2 26.7 127 495-637 3-187 (551)
180 2p6n_A ATP-dependent RNA helic 99.6 1.6E-15 5.6E-20 171.3 14.9 108 733-889 54-161 (191)
181 2p6n_A ATP-dependent RNA helic 99.6 3.8E-15 1.3E-19 168.3 15.1 118 1573-1737 53-171 (191)
182 2yjt_D ATP-dependent RNA helic 99.3 2.3E-16 7.7E-21 175.3 0.0 115 732-895 29-143 (170)
183 2yjt_D ATP-dependent RNA helic 99.3 4.1E-16 1.4E-20 173.2 0.0 119 1573-1738 29-147 (170)
184 2fz4_A DNA repair protein RAD2 99.5 2.5E-14 8.5E-19 167.6 13.6 140 1340-1515 92-232 (237)
185 4a15_A XPD helicase, ATP-depen 99.5 4.4E-13 1.5E-17 177.8 22.9 82 1341-1427 3-87 (620)
186 4a15_A XPD helicase, ATP-depen 99.5 4.1E-13 1.4E-17 178.1 21.8 82 495-586 3-87 (620)
187 1z5z_A Helicase of the SNF2/RA 99.1 2.3E-10 7.9E-15 136.2 12.5 112 732-890 111-225 (271)
188 1z5z_A Helicase of the SNF2/RA 99.1 3.4E-10 1.1E-14 134.8 13.1 114 1572-1729 110-225 (271)
189 1w36_D RECD, exodeoxyribonucle 97.9 1E-05 3.6E-10 107.2 7.9 144 497-667 151-296 (608)
190 1w36_D RECD, exodeoxyribonucle 97.8 4.6E-05 1.6E-09 101.0 10.4 145 1343-1509 151-297 (608)
191 4b3f_X DNA-binding protein smu 97.6 0.00013 4.3E-09 98.0 10.7 68 494-572 188-255 (646)
192 4b3f_X DNA-binding protein smu 97.5 0.00017 5.7E-09 96.8 10.2 67 1340-1411 188-254 (646)
193 3upu_A ATP-dependent DNA helic 97.5 0.00042 1.5E-08 88.9 13.3 68 1338-1409 22-93 (459)
194 3lfu_A DNA helicase II; SF1 he 97.3 0.0035 1.2E-07 84.3 20.3 82 494-585 8-91 (647)
195 3upu_A ATP-dependent DNA helic 97.3 0.00057 2E-08 87.7 11.1 69 492-570 22-94 (459)
196 2gk6_A Regulator of nonsense t 97.2 0.001 3.6E-08 88.6 12.4 68 1339-1411 178-245 (624)
197 2xzl_A ATP-dependent helicase 97.2 0.00093 3.2E-08 90.9 11.9 71 492-573 357-427 (802)
198 2gk6_A Regulator of nonsense t 97.2 0.00084 2.9E-08 89.5 11.2 70 492-572 177-246 (624)
199 2xzl_A ATP-dependent helicase 97.1 0.0013 4.6E-08 89.4 12.4 69 1339-1412 358-426 (802)
200 3e1s_A Exodeoxyribonuclease V, 97.0 0.0023 7.8E-08 84.0 12.8 62 1341-1408 189-250 (574)
201 2wjy_A Regulator of nonsense t 97.0 0.0017 5.9E-08 88.1 11.6 70 492-572 353-422 (800)
202 2wjy_A Regulator of nonsense t 96.9 0.0022 7.6E-08 87.1 11.6 68 1339-1411 354-421 (800)
203 3e1s_A Exodeoxyribonuclease V, 96.8 0.0025 8.5E-08 83.6 11.0 64 495-570 189-252 (574)
204 3ec2_A DNA replication protein 95.8 0.035 1.2E-06 61.2 11.3 41 490-530 9-57 (180)
205 3ec2_A DNA replication protein 95.7 0.048 1.6E-06 60.0 11.8 40 1343-1383 16-63 (180)
206 3cpe_A Terminase, DNA packagin 95.5 0.068 2.3E-06 70.6 13.8 73 495-577 163-235 (592)
207 3lfu_A DNA helicase II; SF1 he 95.3 0.028 9.5E-07 75.4 9.4 93 1339-1455 7-100 (647)
208 1wcn_A Transcription elongatio 95.2 0.023 7.9E-07 52.0 5.7 56 1933-1991 7-62 (70)
209 2o0j_A Terminase, DNA packagin 95.1 0.097 3.3E-06 64.7 12.7 70 1341-1414 163-232 (385)
210 2o0j_A Terminase, DNA packagin 95.0 0.26 8.8E-06 60.9 16.2 71 495-575 163-233 (385)
211 1uaa_A REP helicase, protein ( 94.6 0.031 1.1E-06 75.2 6.9 86 495-608 2-87 (673)
212 3cpe_A Terminase, DNA packagin 94.5 0.18 6E-06 66.7 13.5 72 1341-1416 163-234 (592)
213 1pjr_A PCRA; DNA repair, DNA r 94.4 0.046 1.6E-06 74.0 8.0 110 494-633 10-120 (724)
214 3te6_A Regulatory protein SIR3 94.4 0.15 5.1E-06 61.4 11.3 130 1356-1515 44-177 (318)
215 2orw_A Thymidine kinase; TMTK, 93.9 0.21 7E-06 55.4 10.7 38 1358-1400 4-41 (184)
216 1uaa_A REP helicase, protein ( 93.8 0.062 2.1E-06 72.3 7.4 70 1341-1415 2-72 (673)
217 3te6_A Regulatory protein SIR3 93.7 0.41 1.4E-05 57.6 13.3 127 511-673 45-176 (318)
218 1pjr_A PCRA; DNA repair, DNA r 93.6 0.1 3.6E-06 70.6 8.9 110 1340-1474 10-120 (724)
219 2b8t_A Thymidine kinase; deoxy 93.5 0.066 2.2E-06 61.1 5.7 40 1356-1400 11-50 (223)
220 3i4u_A ATP-dependent RNA helic 93.4 0.05 1.7E-06 63.9 4.8 80 966-1052 14-93 (270)
221 4a1f_A DNAB helicase, replicat 93.2 0.17 5.7E-06 61.5 8.9 144 1354-1510 43-205 (338)
222 2dr3_A UPF0273 protein PH0284; 93.1 0.2 7E-06 57.8 9.4 50 1355-1410 21-70 (247)
223 2v1u_A Cell division control p 92.4 0.54 1.8E-05 58.1 12.5 21 510-530 43-63 (387)
224 2kjq_A DNAA-related protein; s 92.3 0.11 3.9E-06 55.3 5.1 21 510-530 35-55 (149)
225 2qby_B CDC6 homolog 3, cell di 92.3 0.27 9.4E-06 60.9 9.5 26 1357-1383 45-70 (384)
226 3u4q_A ATP-dependent helicase/ 92.1 0.13 4.3E-06 73.9 6.9 74 1340-1416 9-83 (1232)
227 2chg_A Replication factor C sm 92.1 0.4 1.4E-05 53.8 9.9 18 1358-1375 39-56 (226)
228 3vkw_A Replicase large subunit 92.1 0.18 6.1E-06 63.0 7.2 85 513-636 163-247 (446)
229 2q6t_A DNAB replication FORK h 92.0 0.34 1.1E-05 61.6 9.9 143 1356-1510 199-362 (444)
230 3u4q_A ATP-dependent helicase/ 91.9 0.16 5.3E-06 73.0 7.5 74 494-575 9-82 (1232)
231 3bh0_A DNAB-like replicative h 91.8 0.38 1.3E-05 58.1 9.6 142 1355-1510 66-230 (315)
232 3syl_A Protein CBBX; photosynt 91.8 0.4 1.4E-05 57.5 9.9 25 1357-1382 67-91 (309)
233 3bos_A Putative DNA replicatio 91.8 0.33 1.1E-05 55.6 8.8 32 499-530 38-71 (242)
234 1l8q_A Chromosomal replication 91.7 0.86 2.9E-05 55.1 12.8 36 1358-1398 38-73 (324)
235 2r6a_A DNAB helicase, replicat 91.6 0.31 1.1E-05 62.1 9.0 142 1355-1509 201-362 (454)
236 2z4s_A Chromosomal replication 91.6 0.92 3.2E-05 57.4 13.3 39 1358-1399 131-169 (440)
237 3h4m_A Proteasome-activating n 91.4 0.55 1.9E-05 55.5 10.4 21 509-529 49-69 (285)
238 3syl_A Protein CBBX; photosynt 91.3 0.42 1.4E-05 57.3 9.3 20 511-530 67-86 (309)
239 2qby_B CDC6 homolog 3, cell di 91.2 0.48 1.7E-05 58.6 10.0 20 511-530 45-64 (384)
240 1l8q_A Chromosomal replication 91.1 1.1 3.7E-05 54.2 12.8 24 512-536 38-61 (324)
241 1xx6_A Thymidine kinase; NESG, 91.1 0.29 9.9E-06 54.4 6.9 38 512-560 9-46 (191)
242 2w0m_A SSO2452; RECA, SSPF, un 90.9 0.84 2.9E-05 51.8 11.1 46 1464-1511 121-168 (235)
243 3bos_A Putative DNA replicatio 90.9 0.5 1.7E-05 54.0 9.1 27 1356-1383 51-77 (242)
244 2chg_A Replication factor C sm 90.7 1.9 6.5E-05 48.2 13.7 31 500-530 25-57 (226)
245 3vkw_A Replicase large subunit 90.6 0.37 1.3E-05 60.2 7.9 87 1357-1477 161-247 (446)
246 2dr3_A UPF0273 protein PH0284; 90.5 0.48 1.6E-05 54.6 8.4 52 508-571 20-71 (247)
247 2qz4_A Paraplegin; AAA+, SPG7, 90.4 0.62 2.1E-05 54.2 9.5 20 510-529 38-57 (262)
248 1njg_A DNA polymerase III subu 90.4 3.4 0.00012 46.6 15.7 31 500-530 31-64 (250)
249 1sxj_A Activator 1 95 kDa subu 90.4 0.94 3.2E-05 58.6 11.9 18 512-529 78-95 (516)
250 2kjq_A DNAA-related protein; s 90.3 0.34 1.2E-05 51.6 6.3 19 1356-1374 35-53 (149)
251 1w4r_A Thymidine kinase; type 90.3 0.72 2.4E-05 51.1 9.0 38 1357-1399 20-57 (195)
252 3vfd_A Spastin; ATPase, microt 90.2 1.4 4.8E-05 54.8 12.9 20 511-530 148-167 (389)
253 1xx6_A Thymidine kinase; NESG, 90.1 0.43 1.5E-05 53.0 7.2 38 1358-1400 9-46 (191)
254 2p65_A Hypothetical protein PF 89.9 2.7 9.1E-05 45.5 13.6 20 511-530 43-62 (187)
255 2v1u_A Cell division control p 89.9 1.4 5E-05 54.2 12.8 26 1356-1382 43-68 (387)
256 3h4m_A Proteasome-activating n 89.8 0.79 2.7E-05 54.2 9.8 21 1355-1375 49-69 (285)
257 2z4s_A Chromosomal replication 89.8 1.8 6.2E-05 54.7 13.6 24 512-536 131-154 (440)
258 3eie_A Vacuolar protein sortin 89.5 0.73 2.5E-05 55.7 9.3 19 1357-1375 51-69 (322)
259 1xwi_A SKD1 protein; VPS4B, AA 89.4 1.3 4.3E-05 53.7 11.3 46 624-669 106-156 (322)
260 2a1j_A DNA repair endonuclease 89.3 0.31 1E-05 43.6 4.2 54 1141-1195 3-57 (63)
261 3vfd_A Spastin; ATPase, microt 89.2 0.71 2.4E-05 57.5 9.1 20 1356-1375 147-166 (389)
262 3bgw_A DNAB-like replicative h 89.2 0.7 2.4E-05 58.5 9.1 142 1355-1510 195-359 (444)
263 4b4t_J 26S protease regulatory 89.2 0.79 2.7E-05 56.6 9.1 45 625-669 243-294 (405)
264 3u61_B DNA polymerase accessor 89.1 0.81 2.8E-05 55.3 9.3 29 1347-1375 35-66 (324)
265 1xp8_A RECA protein, recombina 89.0 1.2 4E-05 54.8 10.6 40 1356-1400 73-112 (366)
266 2a1j_A DNA repair endonuclease 89.0 0.31 1.1E-05 43.6 4.0 53 1933-1991 4-57 (63)
267 3hu3_A Transitional endoplasmi 89.0 0.98 3.3E-05 57.8 10.2 45 625-669 299-347 (489)
268 1w4r_A Thymidine kinase; type 88.9 0.74 2.5E-05 50.9 7.8 37 512-559 21-57 (195)
269 2j9r_A Thymidine kinase; TK1, 88.8 1.5 5E-05 49.4 10.2 39 1358-1401 29-67 (214)
270 1a5t_A Delta prime, HOLB; zinc 88.8 2.3 7.9E-05 51.6 13.0 41 1342-1383 3-49 (334)
271 1d2n_A N-ethylmaleimide-sensit 88.6 0.97 3.3E-05 53.1 9.2 19 512-530 65-83 (272)
272 2cvh_A DNA repair and recombin 88.5 1.3 4.5E-05 49.8 10.0 35 1356-1398 19-53 (220)
273 1a5t_A Delta prime, HOLB; zinc 88.5 1.1 3.7E-05 54.5 9.9 35 497-531 4-44 (334)
274 3hu3_A Transitional endoplasmi 88.4 1.6 5.6E-05 55.8 11.8 21 1355-1375 236-256 (489)
275 2p65_A Hypothetical protein PF 88.4 4.2 0.00015 43.9 13.8 25 1357-1382 43-67 (187)
276 1njg_A DNA polymerase III subu 88.4 1.4 4.8E-05 50.0 10.3 24 1358-1382 46-69 (250)
277 1u94_A RECA protein, recombina 88.3 0.67 2.3E-05 56.7 7.8 39 1356-1399 62-100 (356)
278 2kz3_A Putative uncharacterize 88.0 0.93 3.2E-05 42.8 6.6 51 1937-1990 8-58 (83)
279 2zpa_A Uncharacterized protein 88.0 0.67 2.3E-05 60.7 7.8 117 495-674 175-292 (671)
280 3u61_B DNA polymerase accessor 87.9 1.9 6.4E-05 52.0 11.4 31 499-529 33-66 (324)
281 1iqp_A RFCS; clamp loader, ext 87.9 0.88 3E-05 54.8 8.5 17 1359-1375 48-64 (327)
282 1fnn_A CDC6P, cell division co 87.8 0.85 2.9E-05 56.4 8.5 35 1359-1397 46-80 (389)
283 4b4t_K 26S protease regulatory 87.7 0.9 3.1E-05 56.8 8.5 45 625-669 267-318 (428)
284 2orv_A Thymidine kinase; TP4A 87.5 0.8 2.7E-05 52.0 7.1 39 512-561 20-58 (234)
285 2zr9_A Protein RECA, recombina 87.5 1.5 5.1E-05 53.6 10.1 39 1356-1399 60-98 (349)
286 1sxj_A Activator 1 95 kDa subu 87.4 1.3 4.3E-05 57.4 10.0 18 1358-1375 78-95 (516)
287 3eie_A Vacuolar protein sortin 87.3 0.66 2.2E-05 56.2 6.8 18 512-529 52-69 (322)
288 3kl4_A SRP54, signal recogniti 87.2 1.5 5.1E-05 55.0 10.0 122 1358-1512 98-224 (433)
289 4b4t_L 26S protease subunit RP 87.1 0.89 3E-05 57.0 7.9 46 624-669 275-327 (437)
290 3kl4_A SRP54, signal recogniti 87.0 1.3 4.6E-05 55.4 9.4 121 512-671 98-224 (433)
291 1z00_B DNA repair endonuclease 87.0 0.42 1.4E-05 45.3 3.7 53 1142-1195 18-71 (84)
292 4b4t_I 26S protease regulatory 86.9 1.2 4.2E-05 55.1 8.9 45 625-669 277-328 (437)
293 3d8b_A Fidgetin-like protein 1 86.8 0.88 3E-05 55.9 7.7 20 511-530 117-136 (357)
294 1z00_B DNA repair endonuclease 86.8 0.46 1.6E-05 45.1 3.8 53 1933-1991 18-71 (84)
295 3d8b_A Fidgetin-like protein 1 86.7 0.67 2.3E-05 57.0 6.5 20 1356-1375 116-135 (357)
296 1sxj_D Activator 1 41 kDa subu 86.5 2.1 7.2E-05 52.1 10.9 27 503-529 48-76 (353)
297 1iqp_A RFCS; clamp loader, ext 86.4 2.2 7.5E-05 51.2 10.8 32 499-530 32-65 (327)
298 3dm5_A SRP54, signal recogniti 86.4 1.5 5.2E-05 54.9 9.4 120 513-671 102-225 (443)
299 1jr3_A DNA polymerase III subu 86.4 4.3 0.00015 49.7 13.7 18 513-530 40-57 (373)
300 3b9p_A CG5977-PA, isoform A; A 86.3 2.3 7.7E-05 50.5 10.7 19 511-529 54-72 (297)
301 4a1f_A DNAB helicase, replicat 86.3 1.2 3.9E-05 54.1 8.0 144 508-669 43-205 (338)
302 2ce7_A Cell division protein F 86.2 1.8 6.1E-05 55.1 10.1 46 624-669 109-161 (476)
303 2zts_A Putative uncharacterize 86.0 0.63 2.2E-05 53.6 5.5 143 1356-1509 29-180 (251)
304 1xwi_A SKD1 protein; VPS4B, AA 85.7 1 3.5E-05 54.4 7.3 19 1357-1375 45-63 (322)
305 2qp9_X Vacuolar protein sortin 85.6 1.9 6.4E-05 52.9 9.7 19 1357-1375 84-102 (355)
306 2qz4_A Paraplegin; AAA+, SPG7, 85.5 1.9 6.4E-05 50.1 9.3 20 1356-1375 38-57 (262)
307 2zpa_A Uncharacterized protein 85.5 1.2 4E-05 58.6 8.0 116 1341-1514 175-291 (671)
308 3hgt_A HDA1 complex subunit 3; 85.5 2.9 9.8E-05 49.9 10.6 94 818-922 168-268 (328)
309 1n0w_A DNA repair protein RAD5 85.3 2 6.9E-05 49.1 9.3 42 1356-1399 23-67 (243)
310 1fnn_A CDC6P, cell division co 85.3 1.9 6.5E-05 53.2 9.8 17 513-529 46-62 (389)
311 3hr8_A Protein RECA; alpha and 85.3 1.3 4.6E-05 53.9 8.0 43 1356-1403 60-102 (356)
312 4b4t_J 26S protease regulatory 85.3 3.7 0.00013 50.6 12.0 19 1356-1374 181-199 (405)
313 1d2n_A N-ethylmaleimide-sensit 85.1 0.77 2.6E-05 54.0 5.7 19 1357-1375 64-82 (272)
314 1lv7_A FTSH; alpha/beta domain 85.1 2.7 9.4E-05 48.7 10.4 19 511-529 45-63 (257)
315 2r6a_A DNAB helicase, replicat 85.1 2.2 7.6E-05 54.1 10.4 30 508-537 200-229 (454)
316 4b4t_M 26S protease regulatory 85.1 0.96 3.3E-05 56.6 6.7 45 625-669 276-327 (434)
317 3dm5_A SRP54, signal recogniti 85.0 1.8 6.3E-05 54.1 9.2 122 1358-1512 101-225 (443)
318 3bh0_A DNAB-like replicative h 84.9 1.3 4.5E-05 53.3 7.7 52 508-571 65-116 (315)
319 3b9p_A CG5977-PA, isoform A; A 84.8 1.2 4.1E-05 53.0 7.2 20 1356-1375 53-72 (297)
320 1sxj_B Activator 1 37 kDa subu 84.8 1.2 4.2E-05 53.3 7.5 17 1359-1375 44-60 (323)
321 3io5_A Recombination and repai 84.7 1.1 3.8E-05 53.3 6.6 91 1359-1477 30-124 (333)
322 2w0m_A SSO2452; RECA, SSPF, un 84.6 5.1 0.00017 45.2 12.3 25 510-534 22-46 (235)
323 1sxj_B Activator 1 37 kDa subu 84.6 1.7 5.9E-05 52.0 8.6 29 502-530 31-61 (323)
324 2qby_A CDC6 homolog 1, cell di 84.6 2.7 9.1E-05 51.7 10.6 20 511-530 45-64 (386)
325 2orv_A Thymidine kinase; TP4A 84.5 1.8 6.2E-05 49.1 8.0 40 1357-1401 19-58 (234)
326 4b4t_H 26S protease regulatory 84.4 1.6 5.6E-05 54.6 8.3 46 624-669 303-355 (467)
327 2qby_A CDC6 homolog 1, cell di 84.0 2.6 9E-05 51.7 10.1 39 1357-1397 45-83 (386)
328 2qp9_X Vacuolar protein sortin 83.6 0.98 3.3E-05 55.4 5.9 18 512-529 85-102 (355)
329 2q6t_A DNAB replication FORK h 83.4 2.9 9.8E-05 53.0 10.3 30 508-537 197-226 (444)
330 1sxj_D Activator 1 41 kDa subu 83.4 1.6 5.6E-05 53.1 7.8 18 1358-1375 59-76 (353)
331 3cf0_A Transitional endoplasmi 83.3 1.2 4E-05 53.4 6.3 21 1355-1375 47-67 (301)
332 3cf0_A Transitional endoplasmi 83.3 1 3.5E-05 53.9 5.7 20 510-529 48-67 (301)
333 3t15_A Ribulose bisphosphate c 83.3 2.3 7.9E-05 50.6 8.8 18 1358-1375 37-54 (293)
334 2cvh_A DNA repair and recombin 83.1 3.1 0.00011 46.6 9.5 24 510-533 19-42 (220)
335 2gno_A DNA polymerase III, gam 83.1 3.9 0.00013 48.9 10.7 42 619-667 78-119 (305)
336 3e2i_A Thymidine kinase; Zn-bi 82.9 1.7 6E-05 48.7 6.9 40 1357-1401 28-67 (219)
337 1g5t_A COB(I)alamin adenosyltr 82.8 2.1 7.3E-05 47.4 7.5 41 509-560 26-66 (196)
338 1cr0_A DNA primase/helicase; R 82.1 5 0.00017 47.6 11.2 48 1461-1510 144-196 (296)
339 3cmu_A Protein RECA, recombina 82.0 1.8 6E-05 63.5 8.2 51 1350-1405 1415-1470(2050)
340 1nlf_A Regulatory protein REPA 81.8 6.7 0.00023 46.0 12.1 26 1354-1379 27-52 (279)
341 2zts_A Putative uncharacterize 81.7 3.1 0.00011 47.7 8.9 52 509-571 28-79 (251)
342 3pfi_A Holliday junction ATP-d 81.6 4.9 0.00017 48.5 11.1 19 512-530 56-74 (338)
343 2chq_A Replication factor C sm 81.4 0.61 2.1E-05 56.0 2.8 114 1343-1508 22-139 (319)
344 1u9l_A Transcription elongatio 81.3 0.81 2.8E-05 41.7 2.9 55 1935-1992 8-62 (70)
345 1sxj_C Activator 1 40 kDa subu 81.3 2.7 9.1E-05 51.1 8.5 27 1349-1375 36-64 (340)
346 1w5s_A Origin recognition comp 81.3 4.3 0.00015 50.5 10.7 20 1357-1376 50-71 (412)
347 2z43_A DNA repair and recombin 81.3 1.9 6.3E-05 52.2 7.0 131 1354-1508 104-255 (324)
348 1v5w_A DMC1, meiotic recombina 81.2 2.4 8.2E-05 51.7 8.0 39 1143-1181 26-67 (343)
349 2fna_A Conserved hypothetical 81.2 14 0.00049 44.4 15.2 30 1344-1375 19-48 (357)
350 4b4t_K 26S protease regulatory 81.2 5.5 0.00019 49.7 11.3 19 1356-1374 205-223 (428)
351 4b4t_L 26S protease subunit RP 81.1 3.1 0.00011 52.1 9.1 19 1356-1374 214-232 (437)
352 1sxj_E Activator 1 40 kDa subu 81.0 4.2 0.00015 49.4 10.3 23 1359-1382 38-60 (354)
353 1b22_A DNA repair protein RAD5 80.9 0.61 2.1E-05 46.9 2.0 56 1934-1992 24-81 (114)
354 1sxj_E Activator 1 40 kDa subu 80.7 6.3 0.00022 47.9 11.7 30 500-529 22-54 (354)
355 1xp8_A RECA protein, recombina 80.7 1.7 5.7E-05 53.4 6.4 41 510-561 73-113 (366)
356 3bgw_A DNAB-like replicative h 80.5 2.4 8.3E-05 53.5 8.0 40 508-558 194-233 (444)
357 3n70_A Transport activator; si 80.4 1 3.5E-05 47.4 3.8 23 507-529 20-42 (145)
358 3pvs_A Replication-associated 80.4 2.1 7.1E-05 54.2 7.3 18 1358-1375 51-68 (447)
359 2i1q_A DNA repair and recombin 80.4 2.1 7.3E-05 51.6 7.2 41 1143-1183 4-45 (322)
360 1jr3_A DNA polymerase III subu 80.2 3.8 0.00013 50.2 9.5 23 1359-1382 40-62 (373)
361 3e2i_A Thymidine kinase; Zn-bi 80.2 2.9 0.0001 46.9 7.4 40 511-561 28-67 (219)
362 4b4t_I 26S protease regulatory 80.0 3.3 0.00011 51.4 8.6 18 1357-1374 216-233 (437)
363 1wcn_A Transcription elongatio 79.9 1.9 6.6E-05 39.3 4.9 54 1142-1195 7-62 (70)
364 3co5_A Putative two-component 79.9 1.1 3.6E-05 47.2 3.7 22 507-528 23-44 (143)
365 3co5_A Putative two-component 79.8 1.2 4E-05 46.8 4.0 22 1353-1374 23-44 (143)
366 3n70_A Transport activator; si 79.4 1.1 3.9E-05 47.0 3.8 23 1353-1375 20-42 (145)
367 4b4t_M 26S protease regulatory 79.2 5.3 0.00018 49.9 10.2 18 1357-1374 215-232 (434)
368 1w5s_A Origin recognition comp 78.9 5.3 0.00018 49.6 10.4 20 511-530 50-71 (412)
369 2w58_A DNAI, primosome compone 78.3 3.2 0.00011 46.0 7.3 26 1358-1384 55-80 (202)
370 1g5t_A COB(I)alamin adenosyltr 78.2 3.7 0.00013 45.4 7.5 40 1356-1400 27-66 (196)
371 2zan_A Vacuolar protein sortin 77.9 2.7 9.1E-05 53.2 7.2 20 1356-1375 166-185 (444)
372 3lda_A DNA repair protein RAD5 77.5 6.6 0.00023 48.7 10.4 132 1354-1508 175-325 (400)
373 2px0_A Flagellar biosynthesis 77.2 11 0.00036 44.9 11.7 21 511-531 105-125 (296)
374 2ce7_A Cell division protein F 77.1 5 0.00017 50.9 9.3 19 1357-1375 49-67 (476)
375 1q57_A DNA primase/helicase; d 77.1 6.5 0.00022 50.5 10.6 142 1356-1510 241-403 (503)
376 1n0w_A DNA repair protein RAD5 76.8 3.7 0.00013 46.8 7.5 25 510-534 23-47 (243)
377 2gno_A DNA polymerase III, gam 76.7 5.7 0.0002 47.4 9.2 18 1359-1376 20-37 (305)
378 1u94_A RECA protein, recombina 76.5 1.4 4.7E-05 54.0 3.8 39 510-559 62-100 (356)
379 3i4u_A ATP-dependent RNA helic 76.5 2.6 8.8E-05 49.4 5.9 76 1761-1842 17-92 (270)
380 1kft_A UVRC, excinuclease ABC 76.4 1.5 5E-05 41.0 3.1 55 1932-1990 23-77 (78)
381 2dhr_A FTSH; AAA+ protein, hex 76.1 7.4 0.00025 49.7 10.5 46 624-669 124-176 (499)
382 1nlf_A Regulatory protein REPA 76.1 15 0.00051 43.0 12.6 26 508-533 27-52 (279)
383 2w58_A DNAI, primosome compone 76.1 3.7 0.00013 45.5 7.0 24 512-536 55-78 (202)
384 1ypw_A Transitional endoplasmi 76.0 6.3 0.00022 53.7 10.5 47 624-670 298-348 (806)
385 2ehv_A Hypothetical protein PH 75.8 2.3 7.9E-05 48.8 5.3 24 1355-1378 28-51 (251)
386 4b4t_H 26S protease regulatory 75.2 4.6 0.00016 50.5 8.0 19 1356-1374 242-260 (467)
387 2zr9_A Protein RECA, recombina 74.8 1.8 6E-05 53.0 4.1 39 510-559 60-98 (349)
388 2oap_1 GSPE-2, type II secreti 74.5 2.2 7.7E-05 54.8 5.1 36 1339-1374 242-277 (511)
389 2oap_1 GSPE-2, type II secreti 74.5 2 6.8E-05 55.2 4.7 35 494-528 243-277 (511)
390 3cmw_A Protein RECA, recombina 74.1 4.6 0.00016 58.5 8.6 42 510-562 33-74 (1706)
391 3cf2_A TER ATPase, transitiona 74.0 5.4 0.00019 53.7 8.8 46 624-669 298-347 (806)
392 2px0_A Flagellar biosynthesis 74.0 13 0.00045 44.1 11.3 20 1357-1376 105-124 (296)
393 3cf2_A TER ATPase, transitiona 73.4 5 0.00017 54.1 8.2 46 1465-1510 298-347 (806)
394 2i1q_A DNA repair and recombin 71.9 3.3 0.00011 49.9 5.5 55 1934-1991 4-58 (322)
395 3hr8_A Protein RECA; alpha and 71.4 4.2 0.00014 49.6 6.3 43 511-564 61-103 (356)
396 1p9r_A General secretion pathw 71.1 3.9 0.00013 51.0 6.1 40 1342-1382 151-191 (418)
397 1s5l_U Photosystem II 12 kDa e 71.1 4.3 0.00015 41.5 5.1 49 1933-1991 63-111 (134)
398 3cmu_A Protein RECA, recombina 70.9 10 0.00035 55.7 11.0 42 1356-1402 382-423 (2050)
399 2b8t_A Thymidine kinase; deoxy 70.7 2.8 9.5E-05 47.7 4.2 39 511-560 12-50 (223)
400 1z00_A DNA excision repair pro 70.7 4.4 0.00015 38.7 5.0 54 1934-1991 20-73 (89)
401 3io5_A Recombination and repai 70.6 2.8 9.4E-05 49.9 4.2 44 513-565 30-73 (333)
402 1vma_A Cell division protein F 70.4 15 0.00053 43.7 10.8 20 511-530 104-123 (306)
403 3cmw_A Protein RECA, recombina 69.5 5.7 0.00019 57.6 7.8 50 1348-1402 369-423 (1706)
404 2a1j_B DNA excision repair pro 69.2 4.5 0.00015 38.9 4.7 53 1934-1990 33-85 (91)
405 1ypw_A Transitional endoplasmi 68.0 7.8 0.00027 52.8 8.5 21 1355-1375 236-256 (806)
406 1qvr_A CLPB protein; coiled co 68.0 10 0.00034 52.2 9.6 21 511-531 191-211 (854)
407 2qgz_A Helicase loader, putati 67.4 7.2 0.00024 46.6 7.1 26 1357-1383 152-177 (308)
408 2orw_A Thymidine kinase; TMTK, 67.3 4.6 0.00016 44.4 4.9 38 512-560 4-41 (184)
409 1x2i_A HEF helicase/nuclease; 66.7 5.2 0.00018 36.6 4.5 54 1934-1991 15-68 (75)
410 1z3e_B DNA-directed RNA polyme 66.6 11 0.00039 34.5 6.4 56 1933-1992 9-64 (73)
411 2qgz_A Helicase loader, putati 66.3 7.5 0.00025 46.5 6.9 26 511-537 152-177 (308)
412 1pzn_A RAD51, DNA repair and r 66.3 7.7 0.00026 47.2 7.2 56 1933-1991 35-90 (349)
413 1e9r_A Conjugal transfer prote 65.8 5.3 0.00018 50.3 5.8 43 1357-1404 53-95 (437)
414 1qvr_A CLPB protein; coiled co 65.2 12 0.00042 51.4 9.7 22 1356-1377 190-211 (854)
415 2dhr_A FTSH; AAA+ protein, hex 65.2 13 0.00044 47.4 9.2 19 1357-1375 64-82 (499)
416 1vq8_Y 50S ribosomal protein L 64.1 1.4 4.9E-05 50.4 0.0 57 1932-1991 14-70 (241)
417 2bjv_A PSP operon transcriptio 62.8 4.3 0.00015 47.2 3.8 24 506-529 24-47 (265)
418 3mab_A Uncharacterized protein 61.6 5.8 0.0002 38.3 3.7 36 1932-1970 3-38 (93)
419 2bjv_A PSP operon transcriptio 61.0 4.8 0.00016 46.8 3.8 23 1353-1375 25-47 (265)
420 1jbk_A CLPB protein; beta barr 60.7 8.1 0.00028 41.6 5.4 20 511-530 43-62 (195)
421 3arc_U Photosystem II 12 kDa e 60.5 4.6 0.00016 39.3 2.8 49 1933-1991 26-74 (97)
422 1p9r_A General secretion pathw 60.2 6.9 0.00024 48.8 5.2 33 496-528 151-184 (418)
423 3jvv_A Twitching mobility prot 60.0 7 0.00024 47.7 5.1 29 1355-1384 121-149 (356)
424 1q57_A DNA primase/helicase; d 59.7 15 0.00053 47.0 8.6 52 508-570 239-290 (503)
425 2gza_A Type IV secretion syste 59.0 6 0.0002 48.5 4.3 25 504-528 168-192 (361)
426 1e9r_A Conjugal transfer prote 58.3 8.1 0.00028 48.6 5.5 43 511-564 53-95 (437)
427 1ofh_A ATP-dependent HSL prote 58.1 6.1 0.00021 46.9 4.1 19 511-529 50-68 (310)
428 3k4g_A DNA-directed RNA polyme 58.0 17 0.00059 34.4 6.1 55 1934-1992 13-67 (86)
429 1jbk_A CLPB protein; beta barr 57.9 9.3 0.00032 41.2 5.3 25 1357-1382 43-67 (195)
430 1ojl_A Transcriptional regulat 57.7 5.5 0.00019 47.5 3.6 22 508-529 22-43 (304)
431 3foz_A TRNA delta(2)-isopenten 57.5 4.3 0.00015 48.2 2.5 17 513-529 12-28 (316)
432 3bqs_A Uncharacterized protein 57.5 6.5 0.00022 37.9 3.3 36 1932-1970 3-38 (93)
433 2gza_A Type IV secretion syste 57.4 7 0.00024 47.9 4.5 25 1350-1374 168-192 (361)
434 2eyu_A Twitching motility prot 57.3 4.8 0.00016 46.9 2.9 22 508-529 22-43 (261)
435 3a8t_A Adenylate isopentenyltr 56.8 5.1 0.00017 48.3 3.0 18 512-529 41-58 (339)
436 3exa_A TRNA delta(2)-isopenten 56.6 4.5 0.00015 48.1 2.5 17 513-529 5-21 (322)
437 2ewv_A Twitching motility prot 56.1 8 0.00027 47.5 4.7 38 1355-1396 134-171 (372)
438 1ofh_A ATP-dependent HSL prote 56.0 11 0.00036 44.7 5.8 19 1357-1375 50-68 (310)
439 1u0j_A DNA replication protein 55.8 14 0.00047 43.0 6.3 48 1331-1380 74-126 (267)
440 1ojl_A Transcriptional regulat 55.7 6.2 0.00021 47.1 3.6 22 1353-1374 21-42 (304)
441 3trf_A Shikimate kinase, SK; a 55.5 5.1 0.00017 43.6 2.6 20 511-530 5-24 (185)
442 4ag6_A VIRB4 ATPase, type IV s 55.2 7.4 0.00025 48.2 4.3 41 1356-1401 34-74 (392)
443 2ze6_A Isopentenyl transferase 54.9 4.7 0.00016 46.7 2.3 17 513-529 3-19 (253)
444 3vaa_A Shikimate kinase, SK; s 54.9 5.4 0.00019 44.2 2.7 22 509-530 23-44 (199)
445 3hws_A ATP-dependent CLP prote 54.7 6.1 0.00021 48.4 3.4 21 510-530 50-70 (363)
446 3lw7_A Adenylate kinase relate 54.7 5 0.00017 42.9 2.3 18 513-530 3-20 (179)
447 2eyu_A Twitching motility prot 54.4 5.6 0.00019 46.3 2.8 21 1354-1374 22-42 (261)
448 3gfk_B DNA-directed RNA polyme 54.2 14 0.00049 34.3 4.9 55 1934-1992 17-71 (79)
449 1kgd_A CASK, peripheral plasma 54.2 6.9 0.00024 42.6 3.4 19 511-529 5-23 (180)
450 2pt7_A CAG-ALFA; ATPase, prote 53.6 6.1 0.00021 47.8 3.0 24 504-527 164-187 (330)
451 3hws_A ATP-dependent CLP prote 53.5 6.5 0.00022 48.1 3.4 20 1356-1375 50-69 (363)
452 3a8t_A Adenylate isopentenyltr 53.1 6.2 0.00021 47.5 2.9 17 1358-1374 41-57 (339)
453 3foz_A TRNA delta(2)-isopenten 53.0 5.5 0.00019 47.3 2.4 16 1359-1374 12-27 (316)
454 3exa_A TRNA delta(2)-isopenten 52.7 5.6 0.00019 47.3 2.4 16 1359-1374 5-20 (322)
455 3tau_A Guanylate kinase, GMP k 52.5 7 0.00024 43.7 3.2 20 1356-1375 7-26 (208)
456 1kgd_A CASK, peripheral plasma 52.4 7.7 0.00026 42.2 3.4 20 1357-1376 5-24 (180)
457 1ls1_A Signal recognition part 52.3 47 0.0016 39.1 10.5 19 1357-1375 98-116 (295)
458 3tau_A Guanylate kinase, GMP k 52.2 7.7 0.00026 43.3 3.5 20 510-529 7-26 (208)
459 3idu_A Uncharacterized protein 52.2 96 0.0033 31.6 11.2 88 1990-2096 14-102 (127)
460 2pt7_A CAG-ALFA; ATPase, prote 52.1 6.8 0.00023 47.3 3.1 25 1350-1374 164-188 (330)
461 2qmh_A HPR kinase/phosphorylas 52.0 7.2 0.00025 43.2 3.0 18 512-529 35-52 (205)
462 3crm_A TRNA delta(2)-isopenten 51.5 6.9 0.00024 46.9 3.0 17 513-529 7-23 (323)
463 2j9r_A Thymidine kinase; TK1, 51.3 12 0.00041 42.0 4.7 38 513-561 30-67 (214)
464 3jvv_A Twitching mobility prot 51.3 7.3 0.00025 47.6 3.2 21 508-528 120-140 (356)
465 1tue_A Replication protein E1; 51.2 11 0.00036 42.1 4.2 43 1339-1382 36-82 (212)
466 2ze6_A Isopentenyl transferase 51.0 5.8 0.0002 45.9 2.2 17 1359-1375 3-19 (253)
467 3vaa_A Shikimate kinase, SK; s 50.9 8.2 0.00028 42.7 3.4 21 1356-1376 24-44 (199)
468 3trf_A Shikimate kinase, SK; a 50.7 8 0.00027 42.0 3.2 20 1357-1376 5-24 (185)
469 3lw7_A Adenylate kinase relate 50.7 6.1 0.00021 42.1 2.2 18 1359-1376 3-20 (179)
470 1lvg_A Guanylate kinase, GMP k 50.2 8.2 0.00028 42.8 3.2 20 511-530 4-23 (198)
471 4ag6_A VIRB4 ATPase, type IV s 50.1 11 0.00039 46.5 4.8 41 510-561 34-74 (392)
472 1qhx_A CPT, protein (chloramph 50.0 6.5 0.00022 42.4 2.3 18 512-529 4-21 (178)
473 2ius_A DNA translocase FTSK; n 50.0 15 0.00051 46.9 5.9 42 1357-1399 167-208 (512)
474 3b85_A Phosphate starvation-in 49.8 12 0.00041 41.9 4.5 36 1339-1375 5-40 (208)
475 1ex7_A Guanylate kinase; subst 49.8 6.7 0.00023 43.2 2.3 16 513-528 3-18 (186)
476 3b85_A Phosphate starvation-in 49.3 14 0.00047 41.4 4.8 35 494-529 6-40 (208)
477 1vma_A Cell division protein F 49.3 21 0.0007 42.6 6.6 53 1357-1414 104-158 (306)
478 1kag_A SKI, shikimate kinase I 49.2 7.9 0.00027 41.5 2.8 19 511-529 4-22 (173)
479 1zp6_A Hypothetical protein AT 48.9 5.8 0.0002 43.4 1.7 21 509-529 7-27 (191)
480 2bgw_A XPF endonuclease; hydro 48.9 15 0.0005 41.5 5.1 53 1935-1991 164-216 (219)
481 2r44_A Uncharacterized protein 48.7 8.6 0.00029 46.3 3.3 26 504-529 39-64 (331)
482 3nbx_X ATPase RAVA; AAA+ ATPas 48.7 8.3 0.00029 49.3 3.3 24 505-528 35-58 (500)
483 2kz3_A Putative uncharacterize 48.7 26 0.00088 33.0 5.7 55 1145-1199 7-67 (83)
484 3d3q_A TRNA delta(2)-isopenten 48.5 8.2 0.00028 46.6 3.0 17 513-529 9-25 (340)
485 2l8b_A Protein TRAI, DNA helic 48.4 20 0.00069 38.9 5.7 63 1342-1408 35-98 (189)
486 1tue_A Replication protein E1; 48.2 13 0.00045 41.4 4.3 33 503-536 47-82 (212)
487 3crm_A TRNA delta(2)-isopenten 47.6 8.5 0.00029 46.1 2.9 16 1359-1374 7-22 (323)
488 3tr0_A Guanylate kinase, GMP k 47.6 10 0.00035 41.9 3.5 21 509-529 5-25 (205)
489 2qmh_A HPR kinase/phosphorylas 47.4 9 0.00031 42.4 2.8 18 1357-1374 34-51 (205)
490 1lvg_A Guanylate kinase, GMP k 47.4 9.5 0.00032 42.3 3.1 20 1357-1376 4-23 (198)
491 2ewv_A Twitching motility prot 47.1 8.1 0.00028 47.5 2.7 22 508-529 133-154 (372)
492 1qhx_A CPT, protein (chloramph 46.8 8.3 0.00028 41.5 2.5 18 1358-1375 4-21 (178)
493 1ly1_A Polynucleotide kinase; 46.8 7.9 0.00027 41.7 2.3 17 513-529 4-20 (181)
494 3kb2_A SPBC2 prophage-derived 46.8 7.8 0.00027 41.3 2.3 18 513-530 3-20 (173)
495 3iij_A Coilin-interacting nucl 46.6 9.1 0.00031 41.4 2.8 21 510-530 10-30 (180)
496 2qor_A Guanylate kinase; phosp 46.3 10 0.00035 42.1 3.2 22 509-530 10-31 (204)
497 2j41_A Guanylate kinase; GMP, 46.3 11 0.00037 41.6 3.5 20 510-529 5-24 (207)
498 3tr0_A Guanylate kinase, GMP k 46.1 11 0.00037 41.6 3.4 20 1356-1375 6-25 (205)
499 3ney_A 55 kDa erythrocyte memb 46.1 11 0.00039 41.7 3.4 19 511-529 19-37 (197)
500 1zp6_A Hypothetical protein AT 46.1 9 0.00031 41.8 2.7 20 1356-1375 8-27 (191)
No 1
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.9e-285 Score=3013.74 Aligned_cols=1678 Identities=63% Similarity=1.084 Sum_probs=1617.4
Q ss_pred cCccccccccccccccCCcccccccccCCCCCcccccCcceEEecCCCCCCCCCCCCCccccCCCChhhHhhcCCCCCCC
Q 000129 418 LGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLN 497 (2114)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~s~~~~~~~~eei~vp~~~~~~~~~~~~l~~i~~lp~~~~~~f~g~~~l~ 497 (2114)
.+|++.+|||++.|+||+|+|+|+|+.||+||.+..+++|||++||++...+...++.++++++||+|++.+|+||++||
T Consensus 2 ~~p~~~~dl~~l~~~~~~~~~~~~~~~lp~~s~~~~~~~~eei~vp~~~~~~~~~~~~l~~i~~Lp~~~~~~f~g~~~ln 81 (1724)
T 4f92_B 2 LAPRQVLDLEDLVFTQGSHFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLN 81 (1724)
T ss_dssp CCCCCCCCHHHHSCTTGGGCCCCCCCCCCSCCCEEECSSEEEEEECCCCCCCCCSSCCCCBTTTSCGGGSTTCTTCSBCC
T ss_pred CCccceecHhhhccccccccccCCceeCCCCCeecccCCcceEecCCCCCCCCCCcCCccchHhcCHHHHHhcCCCCCCC
Confidence 46889999999999999999999999999999999999999999999998888888999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccC
Q 000129 498 RVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMY 577 (2114)
Q Consensus 498 ~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~ 577 (2114)
++|+++++.++++++|+|+|||||||||++|+++|++.+.++....+.....++|+|||+|+||||+|+++.|+++++.+
T Consensus 82 ~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~~~ 161 (1724)
T 4f92_B 82 RIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATY 161 (1724)
T ss_dssp HHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999988766556666778899999999999999999999999999
Q ss_pred CcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhc
Q 000129 578 DVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETT 657 (2114)
Q Consensus 578 gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~ 657 (2114)
|++|+.++||.+.+++....++|+|||||+||.++|++.+..+++.+++|||||+|+++|+||+++|.+++|+++.....
T Consensus 162 gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~rl~~~~~~~ 241 (1724)
T 4f92_B 162 GITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMT 241 (1724)
T ss_dssp TCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCccHHHHHHHHHHHHHHHHhC
Confidence 99999999999988888889999999999999999998777788999999999999999999999999999999988888
Q ss_pred cccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEE
Q 000129 658 KEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVL 737 (2114)
Q Consensus 658 ~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vL 737 (2114)
+.++|+||||||+||++++++||++.+..++++|+.++||+|+.++++++.......+...+++.+++.+.+...++|+|
T Consensus 242 ~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~L 321 (1724)
T 4f92_B 242 QEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVL 321 (1724)
T ss_dssp TCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEE
T ss_pred CCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEE
Confidence 89999999999999999999999988778899999999999999999999988888888889999999888888889999
Q ss_pred EEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHh
Q 000129 738 IFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFG 817 (2114)
Q Consensus 738 VFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~ 817 (2114)
|||+||+.|+.+|+.|.+..........+........+.+........+..|++++++||++|||||++++|..||++|+
T Consensus 322 VF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~ 401 (1724)
T 4f92_B 322 VFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFA 401 (1724)
T ss_dssp EECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHH
Confidence 99999999999999999988777777777777677777788888888899999999999999999999999999999999
Q ss_pred CCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcHHHHHHh
Q 000129 818 DGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSL 897 (2114)
Q Consensus 818 ~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~~l 897 (2114)
+|.++|||||+|||||||+|+++|||++++.||+..|++.++|+.+|+||+|||||+|+|..|.+|+++++++..+|.++
T Consensus 402 ~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~l 481 (1724)
T 4f92_B 402 DKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSL 481 (1724)
T ss_dssp TTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHH
T ss_pred CCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcccchhhHhhHHHHHHHHhhccccChHHHHHHHHhhHHHHhhccCCcccCCCcccccccchhhhhhHHHHHHHHH
Q 000129 898 MNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAAT 977 (2114)
Q Consensus 898 l~~~~pies~l~~~l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~al~ 977 (2114)
++++.||||+|...+.|+||+||++|++.+.+++++||++||+|+||.+||.+|++..+....|+.+++++.++|++++.
T Consensus 482 l~~~~pieS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l~~~~~~~i~~~~~ 561 (1724)
T 4f92_B 482 LNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAAL 561 (1724)
T ss_dssp TTTCSCCCCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HcCCCcchhhccccHHHHHHHHHHHhhcCCHHHHHHHHhccHHHHHhhhChhhhccCccccccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988778889999999999999999
Q ss_pred HHhHCCCcccccCCCccccChhHHHHhhcccccccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChhHHHHHHHHhc
Q 000129 978 ILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLD 1057 (2114)
Q Consensus 978 ~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~i~s~s~ef~~i~~r~~e~~~l~~l~~ 1057 (2114)
.|+++|||.+|++++.+.+|++||+||+|||++.||+.|++.+++.+++.++|+++|+|+||+++++|++|+.+|++|++
T Consensus 562 ~L~~~~li~~d~~~~~~~~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~is~s~ef~~i~~R~~E~~~l~~l~~ 641 (1724)
T 4f92_B 562 MLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLE 641 (1724)
T ss_dssp HHHHTTSEEECTTTCBEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGTTCCCCGGGHHHHHHHHH
T ss_pred HHHHCCCeeeecCCCccccchHHHHHHHhcCCHHHHHHHHhhcCCCCCHHHHHHHHhCChhhccCCcCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHHHhcccCCCCcccchHHHHHHhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHccc
Q 000129 1058 RVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRM 1137 (2114)
Q Consensus 1058 ~~~~~~~~~~~~~~~K~~~llq~~i~~~~~~~~~l~~d~~~i~~~a~rl~~a~~ei~~~~~~~~~~~~~~~l~~~~~~~~ 1137 (2114)
++|+|+++++++++.|+|+|||+|||++++++|+|.+|+.||.|+|.||+||++|||..+||+..+.++++|||||++||
T Consensus 642 ~~~~~~~~~~~~~~~Kv~~Llq~~i~~~~~~~~~l~~D~~~i~~~a~ri~ra~~ei~~~~~~~~~~~~~l~l~k~i~~~~ 721 (1724)
T 4f92_B 642 RVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVYVTQLAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRM 721 (1724)
T ss_dssp HSSSCCCSCCSSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTS
T ss_pred cCCCCcCCCCCChHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccCCCCCHHHHHHHHhCCCchhhhccCChHHhhhhhcCchhHHHHHHHHhcCCceeEEEEEeeccCceEEEEE
Q 000129 1138 WSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVEL 1217 (2114)
Q Consensus 1138 w~~~~~l~q~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~P~~~~~~~~~~~~~~~l~~~l 1217 (2114)
|++++||+|||++|++++++|+++|++|+++.++++.++++++++|++|+.|++++++||++++++++||||+++++|++
T Consensus 722 w~~~~~L~q~~~i~~~~~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~g~~i~~~~~~~P~~~~~~~~~p~~~~~~~~~~ 801 (1724)
T 4f92_B 722 WQSMCPLRQFRKLPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVEL 801 (1724)
T ss_dssp CTTSCGGGGSTTSCHHHHHHHHTSSCCGGGGGGCCHHHHHHHHTCSTTHHHHHHHHTTSCCEEEEEEEEESSSSEEEEEE
T ss_pred CCCCCceecCCCCCHHHHHHHHhcCCCHHHHHhCCHHHHHHHHCCchHHHHHHHHHHHCCCceEEEEEEecCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCccCCCCCCccccEEEEEEeCCCCeEEEEEeeeeeecccccccEEEEEeccCCCCCCeEEEEEeccccccCcccc
Q 000129 1218 TITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVL 1297 (2114)
Q Consensus 1218 ~i~~~f~~~~~~~~~~~~~wi~v~d~~~~~i~~~~~~~l~~~~~~~~~~~~f~vp~~~p~p~~y~v~~vSD~wl~~e~~~ 1297 (2114)
+|+|+|.|++++||..|+|||||||++++.|||+++|.+++++.+++|.++|++|+.+|+||+|+|+++||+|+||++.+
T Consensus 802 ~~~~~~~w~~~~h~~~~~~~~~v~d~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~p~~~~i~~~sd~w~~~~~~~ 881 (1724)
T 4f92_B 802 TITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQL 881 (1724)
T ss_dssp EEEECSCCCTTTTTTEEEEEEEEECTTSCBEEEEEEEEEEGGGTTSCEEEEEEEECCSSCCSEEEEEEEESSSTTCEEEE
T ss_pred EEeeccccchhhcCCceeEEEEEEecCCCeEEEEEEEEeeeeccCCceEEEEEEECCCCCCCeEEEEEEEccccCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCCCCCccCCCCCCcccccChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHH
Q 000129 1298 PVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEF 1376 (2114)
Q Consensus 1298 ~is~~~l~lp~~~~~~t~lldl~p~~~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l 1376 (2114)
||+|+|+++|+++|++|+++|++|+|+++|+++.++++|. +|++|||+|++||+.+|++++|++|+||||||||++|++
T Consensus 882 ~~~~~~~~~p~~~~~~t~lldl~plp~s~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliael 961 (1724)
T 4f92_B 882 PVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEF 961 (1724)
T ss_dssp EEECTTCCCCCCCCCCCCCCCCCCCBGGGSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHH
T ss_pred eeccccccCCCCCCCCCccccCCCCCcccccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHH
Confidence 9999999999999999999999999999999999999998 699999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhh
Q 000129 1377 AILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRW 1456 (2114)
Q Consensus 1377 ~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~ 1456 (2114)
||++.+.+ .+++ ++|||+|+|+||.|++++|+++|++..|++|+.++|+...+.+.+.+++|+|||||+|+.++|+|
T Consensus 962 ail~~l~~-~~~~--kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~ 1038 (1724)
T 4f92_B 962 AILRMLLQ-SSEG--RCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRW 1038 (1724)
T ss_dssp HHHHHHHH-CTTC--CEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTT
T ss_pred HHHHHHHh-CCCC--EEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchhhcCCCCEEEECHHHHHHHHhCc
Confidence 99999987 3444 89999999999999999999999988899999999999888888888999999999999999999
Q ss_pred cccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCC
Q 000129 1457 KQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVR 1536 (2114)
Q Consensus 1457 ~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~r 1536 (2114)
..+..++++++||+||+|++++++|+.+|.++++|+++..+.+.++|+|+||||++|++++++|++.....+++|.+++|
T Consensus 1039 ~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~R 1118 (1724)
T 4f92_B 1039 KQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVR 1118 (1724)
T ss_dssp TTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGC
T ss_pred ccccccceeeEEEeechhhcCCCCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCC
Confidence 98889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccc
Q 000129 1537 PVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEV 1616 (2114)
Q Consensus 1537 pv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l 1616 (2114)
|+|++.++.+++..+...++..+.++.+..+..+ ..++|+||||+||++|+.+|..|...+........ ++....+++
T Consensus 1119 PvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~-~~~~~~~~l 1196 (1724)
T 4f92_B 1119 PVPLELHIQGFNISHTQTRLLSMAKPVYHAITKH-SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQR-FLHCTEKDL 1196 (1724)
T ss_dssp SSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHH-CSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTT-TBCSCHHHH
T ss_pred CCCeEEEEEeccCCCchhhhhhhcchHHHHHHHh-cCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhh-hhcccHHHH
Confidence 9999999999999999999999999999888777 88899999999999999999999999887777666 777888888
Q ss_pred hhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCC
Q 000129 1617 EPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHT 1696 (2114)
Q Consensus 1617 ~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~ 1696 (2114)
...+..+.+..|.+++..||++|||||++.+|..|+++|++|.++|||||++++||||+|++.|||+||++|+++.+++.
T Consensus 1197 ~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~ 1276 (1724)
T 4f92_B 1197 IPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYV 1276 (1724)
T ss_dssp HHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEE
T ss_pred HHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccC
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHHHHH---------------------------------------
Q 000129 1697 DYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFL--------------------------------------- 1737 (2114)
Q Consensus 1697 ~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~~~l--------------------------------------- 1737 (2114)
|+++.+|+||+|||||+|+|..|.|+++|++.++++|++++
T Consensus 1277 ~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~~~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~ 1356 (1724)
T 4f92_B 1277 DYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTW 1356 (1724)
T ss_dssp ECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTTSCBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTT
T ss_pred CCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHHhCCCCceeeecccchHHHHHHHHHhcccCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999987
Q ss_pred -----HhccCCCCccccCCCccchHHHHHHHHHHHHHHHHHCCCceecCCCccccCcccchhhhcccCHhHHHHHHhhcC
Q 000129 1738 -----RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLT 1812 (2114)
Q Consensus 1738 -----Rl~~nP~~y~l~~~s~~~l~~~lselve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~i~~~T~~~f~~sl~ 1812 (2114)
|+.+||+||++.+.++.+++++++++|+++++.|++++||++++++++.||++|++||+|||+|.|++.|..+++
T Consensus 1357 Tfl~~r~~~nP~~y~l~~~~~~~~~~~l~~lv~~~l~~L~~~~~I~~~~~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l~ 1436 (1724)
T 4f92_B 1357 TFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLN 1436 (1724)
T ss_dssp SSHHHHHHHSGGGTTCSCCSHHHHHHHHHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHTTCCHHHHHHHHHHCC
T ss_pred hHHHHHHhcCcccccccccchhhHHHHHHHHHHHHHHHHHHCCCEEEcCCCCEeecHHHHHHHHHCCCHHHHHHHHHhcc
Confidence 788999999999999999999999999999999999999999988889999999999999999999999999999
Q ss_pred CCCChhhHHHHHhcCccccCCCCCcchHHHHHHHHhhCCcccCCCCCCChHHHHHHHHHHHhcCCCCCCCchhhHHHHHH
Q 000129 1813 PKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLL 1892 (2114)
Q Consensus 1813 ~~~~~~~iL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~p~~~~~~~~~~~~~K~~lLLqahlsr~~lp~~l~~D~~~il~ 1892 (2114)
..+++.++|++||.|+||.++|+|++|+..+.+|++++|+++....+.+||.|+++||||||+|+++|.+|.+|+..|++
T Consensus 1437 ~~~~~~~~L~il~~a~ef~~i~~R~~E~~~l~~l~~~~~~~~~~~~~~~~~~K~~lLlqa~~~r~~l~~~~~~D~~~i~~ 1516 (1724)
T 4f92_B 1437 AKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILS 1516 (1724)
T ss_dssp TTCCHHHHHHHHHTSGGGTTCCCCTTHHHHHHHHHHHSSSCCSSCCTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHhcCCcccccccccccHHHHHHHHHhhCCCCCCccccCCHHHHHHHHHHHHHCCCcCChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHH
Q 000129 1893 SASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERR 1972 (2114)
Q Consensus 1893 ~a~rLl~a~vdi~~~~g~l~~al~~m~L~q~i~Qg~w~~~s~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~ 1972 (2114)
++.||++||+|++++.||+++++++|+|+|||+||+|++++||+|||||++.++++|.++| |+|++||+++++++++
T Consensus 1517 ~~~rl~~a~~d~~~~~g~~~~~~~~~~l~q~l~~~~w~~~~~L~qip~i~~~~ar~l~~~g---i~t~~dl~~~~~~~~~ 1593 (1724)
T 4f92_B 1517 KAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKG---VESVFDIMEMEDEERN 1593 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHTTCCTTSCGGGGSTTCCHHHHHHHHHHT---CCSHHHHHSSCHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhCCCcCCcCEecCCCCCHHHHHHHHHCC---CCCHHHHHhCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHhcCChHHHHHHHHHHhcCCceEEEEEEeccccccCCCcEEEEEEEEEcCCCCcccCccccCCCCCCccccEEEEEEEC
Q 000129 1973 ELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAKEEGWWLVVGDT 2052 (2114)
Q Consensus 1973 ~ll~~~~~~~~~i~~~~~~~P~i~v~~~v~~~~~v~~g~~~~l~v~l~r~~~~~~~~~~v~ap~fp~~k~e~Wwlvvgd~ 2052 (2114)
.+|++++.++++|++|||+||+|+|++++.+.+.+.+|++++++|+++|+++. .+.|+||+||+.|.|+||+||||.
T Consensus 1594 ~ll~~~~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~p~~k~e~w~~vvg~~ 1670 (1724)
T 4f92_B 1594 ALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLEREEEV---TGPVIAPLFPQKREEGWWVVIGDA 1670 (1724)
T ss_dssp TSSCCCHHHHHHHHHHHHHSCCEEEEEEEETSSSCCTTSEEEEEEEEEESSCC---CSCCCCTTSCSCCCCCEEEEEEET
T ss_pred HHHCCChHHHHHHHHHHHhCCceEEEEEEecCccccCCCeEEEEEEEEecCCC---CCeeecCCCCCCCccCEEEEEEEC
Confidence 99999999999999999999999999999998899999999999999996532 257999999999999999999999
Q ss_pred CCCeEEEEEEeecccccEEEEEEEecCCCCceEEEEEEEecCccccCeEEEEEEE
Q 000129 2053 KTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCDSYMGCDQEYAFTVD 2107 (2114)
Q Consensus 2053 ~~~~L~~~krv~~~~~~~~~l~f~~p~~~G~~~~~l~~~sDsY~G~D~~~~~~~~ 2107 (2114)
++|+|+++||+++.+...++++|++| .+|.|+|++|+|||||+||||||+|+++
T Consensus 1671 ~~~~l~~~kr~~~~~~~~~~l~f~~p-~~g~~~~~~~~~~d~y~g~d~~~~~~~~ 1724 (1724)
T 4f92_B 1671 KSNSLISIKRLTLQQKAKVKLDFVAP-ATGAHNYTLYFMSDAYMGCDQEYKFSVD 1724 (1724)
T ss_dssp TTTEEEEEEEECCSSEEEEEEEEECC-SSSCEEEEEEEEESSCSSCCEEEEEEEC
T ss_pred CCCeEEEEEEEecCCCceEEEEEEeC-CCCceeEEEEEEecCccccceeEEEecC
Confidence 99999999999999988999999999 7899999999999999999999999874
No 2
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=9.3e-111 Score=1205.33 Aligned_cols=802 Identities=29% Similarity=0.479 Sum_probs=731.0
Q ss_pred cccCCCCh-hhHhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEE
Q 000129 477 IKISEMPE-WAQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIV 554 (2114)
Q Consensus 477 ~~i~~lp~-~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil 554 (2114)
.+++.|+. .+...| .+|++|||+|+++|+.++++++|++++||||||||++|++||++.+.+.. +.++|
T Consensus 906 lp~s~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~---------~~kav 976 (1724)
T 4f92_B 906 LPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS---------EGRCV 976 (1724)
T ss_dssp CBGGGSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT---------TCCEE
T ss_pred CCcccccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC---------CCEEE
Confidence 46677744 445555 47999999999999999999999999999999999999999999998652 33799
Q ss_pred EEcccHHHHHHHHHHHHHhhcc-CCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccc
Q 000129 555 YVAPMKALVAEVVGNLSNRLQM-YDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIH 633 (2114)
Q Consensus 555 ~iaP~raLa~q~~~~~~~~~~~-~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH 633 (2114)
||+|+||||.|+++.|.++++. +|++|+.++|+...+.+....++|+|||||+|+.++|++....+++++++||+||+|
T Consensus 977 yi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H 1056 (1724)
T 4f92_B 977 YITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVH 1056 (1724)
T ss_dssp EECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGG
T ss_pred EEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechh
Confidence 9999999999999999988864 799999999998876666778999999999999999998877889999999999999
Q ss_pred ccccCCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchh
Q 000129 634 LLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713 (2114)
Q Consensus 634 ~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~ 713 (2114)
++++.||+.++.+++++.......+.++|+|+||||+||++++++||+... .+.+.|.+++||+|+..++.++......
T Consensus 1057 ~l~d~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~-~~~~~~~~~~RPvpL~~~i~~~~~~~~~ 1135 (1724)
T 4f92_B 1057 LIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSA-TSTFNFHPNVRPVPLELHIQGFNISHTQ 1135 (1724)
T ss_dssp GGGSTTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCS-TTEEECCGGGCSSCEEEEEEEECCCSHH
T ss_pred hcCCCCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCHHHHHHHhCCCC-CCeEEeCCCCCCCCeEEEEEeccCCCch
Confidence 999999999999999998888778889999999999999999999999874 6788999999999999999999888888
Q ss_pred HHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhc
Q 000129 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (2114)
Q Consensus 714 ~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll 793 (2114)
.++..++..++..+.....++++||||+||+.|+.+|..|............++.. ..+.+........+..|++++
T Consensus 1136 ~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~---~~~~l~~~l~~~~d~~L~~~l 1212 (1724)
T 4f92_B 1136 TRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHC---TEKDLIPYLEKLSDSTLKETL 1212 (1724)
T ss_dssp HHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCS---CHHHHHHHHTTCCCHHHHHHH
T ss_pred hhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcc---cHHHHHHHHhhcccHHHHHHH
Confidence 88888898899888888888999999999999999999998776554443344322 233444556677889999999
Q ss_pred cCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCC
Q 000129 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2114)
Q Consensus 794 ~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2114)
.+||++|||||++.+|..|+++|++|.++|||||+++|||||+|+++|||.+++.||+...++.++++.+|+||+|||||
T Consensus 1213 ~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR 1292 (1724)
T 4f92_B 1213 LNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANR 1292 (1724)
T ss_dssp HTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCC
T ss_pred hCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccC
Confidence 99999999999999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred CCCCCceEEEEEcCCCcHHHHHHhhcCCCcccchhhHhhHHHHHHHHhhccccChHHHHHHHHhhHHHHhhccCCcccCC
Q 000129 874 PQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGL 953 (2114)
Q Consensus 874 ~g~d~~G~~iil~~~~e~~~~~~ll~~~~pies~l~~~l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~ 953 (2114)
+|+|..|.|+++|...+..+|.+++++++|+||+|...+.+++|+||+.|++.+.+++++|++|||+|+|+.+||.+|++
T Consensus 1293 ~g~d~~G~avll~~~~~~~~~~~ll~~~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~~r~~~nP~~y~l 1372 (1724)
T 4f92_B 1293 PLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNL 1372 (1724)
T ss_dssp TTTCSCEEEEEEEEGGGHHHHHHHTTSCBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTTSSHHHHHHHSGGGTTC
T ss_pred CCCCCceEEEEEecchHHHHHHHHhCCCCceeeecccchHHHHHHHHHhcccCCHHHHHHHHHhhHHHHHHhcCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccchhhhhhHHHHHHHHHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHHHHhhcCCCCCHHHHHHHh
Q 000129 954 APEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLF 1033 (2114)
Q Consensus 954 ~~~~~~~~~~l~~~~~~li~~al~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~i~ 1033 (2114)
... ....+++++.++|+++++.|.++|||..++ ++.+.+|++|++||+|||+|.|++.|...+++.++..++|+++
T Consensus 1373 ~~~---~~~~~~~~l~~lv~~~l~~L~~~~~I~~~~-~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~L~il 1448 (1724)
T 4f92_B 1373 QGI---SHRHLSDHLSELVEQTLSDLEQSKCISIED-EMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEII 1448 (1724)
T ss_dssp SCC---SHHHHHHHHHHHHHHHHHHHHHTTSEEEET-TTEEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHH
T ss_pred ccc---chhhHHHHHHHHHHHHHHHHHHCCCEEEcC-CCCEeecHHHHHHHHHCCCHHHHHHHHHhccccCCHHHHHHHh
Confidence 763 445688899999999999999999999875 4679999999999999999999999999999999999999999
Q ss_pred hCCccCCCCcCChhHHHHHHHHhccCCCCCCCC-CCChhHHHHHHHHHHHhcccCCCCcccchHHHHHHhHHHHHHHHHH
Q 000129 1034 SLSEEFKYVTVRQDEKMELAKLLDRVPIPVKES-LEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFE 1112 (2114)
Q Consensus 1034 s~s~ef~~i~~r~~e~~~l~~l~~~~~~~~~~~-~~~~~~K~~~llq~~i~~~~~~~~~l~~d~~~i~~~a~rl~~a~~e 1112 (2114)
|.+.||.++++|++|+..+.+|..++|+++.+. +++|+.|+++|||||+||++++ .++.+|+..|+++|.||++|++|
T Consensus 1449 ~~a~ef~~i~~R~~E~~~l~~l~~~~~~~~~~~~~~~~~~K~~lLlqa~~~r~~l~-~~~~~D~~~i~~~~~rl~~a~~d 1527 (1724)
T 4f92_B 1449 SNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLS-AELQSDTEEILSKAIRLIQACVD 1527 (1724)
T ss_dssp HTSGGGTTCCCCTTHHHHHHHHHHHSSSCCSSCCTTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcccccccccccHHHHHHHHHhhCCCCCCccccCCHHHHHHHHHHHHHCCCcCC-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987764 7899999999999999999997 68899999999999999999999
Q ss_pred HHHHcCcHHHHHHHHHHHHHHHccccCCCCccccCCCCCHHHHHHHHhCCC-chhhhccCChHHhhhhhc-CchhHHHHH
Q 000129 1113 IVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF-AWERYYDLSPQELGELIR-FPKMGRTLH 1190 (2114)
Q Consensus 1113 i~~~~~~~~~~~~~~~l~~~~~~~~w~~~~~l~q~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~i~ 1190 (2114)
+|..+||...+..+++|+|||.+++|++++||+|+|||+++++++|.++|+ ++.++.++++++++.+++ .++++.+|+
T Consensus 1528 ~~~~~g~~~~~~~~~~l~q~l~~~~w~~~~~L~qip~i~~~~ar~l~~~gi~t~~dl~~~~~~~~~~ll~~~~~~~~~i~ 1607 (1724)
T 4f92_B 1528 VLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVA 1607 (1724)
T ss_dssp HHHHTTBHHHHHHHHHHHHHHHTTCCTTSCGGGGSTTCCHHHHHHHHHHTCCSHHHHHSSCHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHhCCCcCCcCEecCCCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHHCCChHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 789999999999999997 478899999
Q ss_pred HHHhcCCceeEEEEEeecc----CceEEEEEEEccCCccCCCCCCcc------ccEEEEEEeCCCCeEEEEEeeeeeecc
Q 000129 1191 KFVHQFPKLILAAHVQPIT----RTVLKVELTITPDFLWDDKVHGYV------EPFWVIVEDNDGEYILHHEYFMLKKQY 1260 (2114)
Q Consensus 1191 ~~~~~~P~~~~~~~~~~~~----~~~l~~~l~i~~~f~~~~~~~~~~------~~~wi~v~d~~~~~i~~~~~~~l~~~~ 1260 (2114)
+++++||++++++.+++.+ +..+.|.++++.+...+..+|++. |.||++|+|.+++.|+++++++++++
T Consensus 1608 ~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~p~~k~e~w~~vvg~~~~~~l~~~kr~~~~~~- 1686 (1724)
T 4f92_B 1608 RFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQK- 1686 (1724)
T ss_dssp HHHHHSCCEEEEEEEETSSSCCTTSEEEEEEEEEESSCCCSCCCCTTSCSCCCCCEEEEEEETTTTEEEEEEEECCSSE-
T ss_pred HHHHhCCceEEEEEEecCccccCCCeEEEEEEEEecCCCCCeeecCCCCCCCccCEEEEEEECCCCeEEEEEEEecCCC-
Confidence 9999999999999997654 567788888888777777777654 55999999999999999999998773
Q ss_pred cccccEEEEEeccCCCCCCeEEEEEeccccccCcccccccc
Q 000129 1261 IEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSF 1301 (2114)
Q Consensus 1261 ~~~~~~~~f~vp~~~p~p~~y~v~~vSD~wl~~e~~~~is~ 1301 (2114)
...+++|++| +|++++|.++++||+|+||+.+..+++
T Consensus 1687 --~~~~l~f~~p--~~g~~~~~~~~~~d~y~g~d~~~~~~~ 1723 (1724)
T 4f92_B 1687 --AKVKLDFVAP--ATGAHNYTLYFMSDAYMGCDQEYKFSV 1723 (1724)
T ss_dssp --EEEEEEEECC--SSSCEEEEEEEEESSCSSCCEEEEEEE
T ss_pred --ceEEEEEEeC--CCCceeEEEEEEecCccccceeEEEec
Confidence 4567899998 688999999999999999998776654
No 3
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=9.5e-81 Score=851.17 Aligned_cols=656 Identities=26% Similarity=0.384 Sum_probs=537.2
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
||+++++.| .||.+|+|+|.++++.++..++|++++||||||||++|.+++++.+... +.+++|++|+
T Consensus 15 l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~----------~~~il~i~P~ 84 (715)
T 2va8_A 15 LPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN----------GGKAIYVTPL 84 (715)
T ss_dssp SCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS----------CSEEEEECSC
T ss_pred CCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC----------CCeEEEEeCc
Confidence 589999988 6899999999999998677788999999999999999999999987642 2489999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-C
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N 638 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~ 638 (2114)
|+||.|++++|+ .+..+|++|+.++|+..........++|+|+|||+|+.+.+.. ..+++++++|||||+|++.+ .
T Consensus 85 r~La~q~~~~~~-~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~--~~~l~~~~~vIiDE~H~l~~~~ 161 (715)
T 2va8_A 85 RALTNEKYLTFK-DWELIGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHR--PEWLNEVNYFVLDELHYLNDPE 161 (715)
T ss_dssp HHHHHHHHHHHG-GGGGGTCCEEECCSCSSSCCGGGGGCSEEEECHHHHHHHHHHC--CGGGGGEEEEEECSGGGGGCTT
T ss_pred HHHHHHHHHHHH-HhhcCCCEEEEEeCCCCCchhhcCCCCEEEEcHHHHHHHHhCC--hhHhhccCEEEEechhhcCCcc
Confidence 999999999994 5667799999999998877666678999999999998887764 25688999999999999988 7
Q ss_pred CchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccC--------
Q 000129 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVK-------- 710 (2114)
Q Consensus 639 rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~-------- 710 (2114)
||+.++.++.++. +.|+|+||||++|.++++.|++.. .+...+||+|+...+......
T Consensus 162 ~~~~l~~i~~~~~--------~~~ii~lSATl~n~~~~~~~l~~~------~~~~~~r~~~l~~~~~~~~~~~~~~~~~~ 227 (715)
T 2va8_A 162 RGPVVESVTIRAK--------RRNLLALSATISNYKQIAKWLGAE------PVATNWRPVPLIEGVIYPERKKKEYNVIF 227 (715)
T ss_dssp THHHHHHHHHHHH--------TSEEEEEESCCTTHHHHHHHHTCE------EEECCCCSSCEEEEEEEECSSTTEEEEEE
T ss_pred cchHHHHHHHhcc--------cCcEEEEcCCCCCHHHHHHHhCCC------ccCCCCCCCCceEEEEecCCcccceeeec
Confidence 9999999988773 789999999999999999999753 356788999988765422100
Q ss_pred -c-hhHHHHHhhHHHHHHHHHH-hCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhc-----
Q 000129 711 -K-PLQRFQLMNDLCYEKVVAV-AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTD----- 782 (2114)
Q Consensus 711 -~-~~~~~~~~~~~~~~~i~~~-~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~----- 782 (2114)
. ....+. .....+..+.+. ..++++||||+|+++++.++..|.+..... ++.. .....+.....
T Consensus 228 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~-----~~~~--~~~~~~~~~~~~i~~~ 299 (715)
T 2va8_A 228 KDNTTKKVH-GDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFV-----SLDE--NALSEILKQLDDIEEG 299 (715)
T ss_dssp TTSCEEEEE-SSSHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSS-----CCCH--HHHHHHHHHHHTCCSS
T ss_pred Ccchhhhcc-cchHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhc-----cCCh--HHHHHHHHHHHHhhhc
Confidence 0 000000 001122333332 246899999999999999999998753220 1110 11111111111
Q ss_pred -ccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCc-cccCC
Q 000129 783 -MVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGA-WTELS 860 (2114)
Q Consensus 783 -~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~-~~~~s 860 (2114)
...+..|+++++.||++|||+|+..+|..+++.|++|.++|||||+++++|||+|++++||+++..||+..+. +.++|
T Consensus 300 ~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s 379 (715)
T 2va8_A 300 GSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIP 379 (715)
T ss_dssp CHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------C
T ss_pred cccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCC
Confidence 1223568888899999999999999999999999999999999999999999999999999999999964432 47889
Q ss_pred HHHHHHhhcccCCCCCCCceEEEEEcCCCc-H-HHHHHhh-cCCCcccchhhH--hhHHHHHHHHhhccccChHHHHHHH
Q 000129 861 PLDIMQMLGRAGRPQYDSYGEGIIITGHSE-L-RYYLSLM-NQQLPIESQFVS--KLADQLNAEIVLGTVQNAKEACNWI 935 (2114)
Q Consensus 861 ~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e-~-~~~~~ll-~~~~pies~l~~--~l~d~l~~ei~~~~i~~~~~~~~wl 935 (2114)
..+|+||+|||||+|+|..|.||+++++.+ . .++.+++ ..+.|++|++.. .+.++++++++.|++.+.+++.+|+
T Consensus 380 ~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l 459 (715)
T 2va8_A 380 IMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFA 459 (715)
T ss_dssp HHHHHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHH
T ss_pred HHHHHHHhhhcCCCCCCCCceEEEEeCCchHHHHHHHHHHcCCCCCceecCCchhHHHHHHHHHHhccccCCHHHHHHHH
Confidence 999999999999999999999999998876 3 3455554 578899999976 7999999999999999999999999
Q ss_pred HhhHHHHhhccCCcccCCCcccccccchhhhhhHHHHHHHHHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHH
Q 000129 936 GYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTIST 1015 (2114)
Q Consensus 936 ~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~al~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~ 1015 (2114)
++||+|+++.. ..+++|+..|.+.|+|+.+ ++.+.+|++|+++|+||++|.++++
T Consensus 460 ~~~~~~~~~~~-----------------------~~~~~al~~L~~~g~i~~~--~~~~~~t~lG~~~~~~~~~~~~~~~ 514 (715)
T 2va8_A 460 YESLLAKQLVD-----------------------VYFDRAIRWLLEHSFIKEE--GNTFALTNFGKRVADLYINPFTADI 514 (715)
T ss_dssp TTSSSCHHHHH-----------------------HHHHHHHHHHHHTTSEEEC--SSEEEECHHHHHHHHHTCCHHHHHH
T ss_pred HhhHHHhhcch-----------------------HHHHHHHHHHHHCcCEeec--CCeEeeChHHHHHHHHcCCHhHHHH
Confidence 99999876321 1278899999999999865 3568999999999999999999999
Q ss_pred HHhhcCC--CCCHHHHHHHhhCCccCCCCcCChhHHHHHHHHhcc------CCCCCCCC-CCC--hhHHHHHHHHHHHhc
Q 000129 1016 YNEHLKP--TMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDR------VPIPVKES-LEE--PSAKINVLLQAYISQ 1084 (2114)
Q Consensus 1016 ~~~~l~~--~~~~~~~l~i~s~s~ef~~i~~r~~e~~~l~~l~~~------~~~~~~~~-~~~--~~~K~~~llq~~i~~ 1084 (2114)
|+.+++. ..+..++|.++|+++||.++++|++|+.+|.+++.+ .+.|+++. +++ ++.|+++|||+|||+
T Consensus 515 ~~~~~~~~~~~~~~~~l~~i~~~~e~~~~~~r~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~ 594 (715)
T 2va8_A 515 IRKGLEGHKASCELAYLHLLAFTPDGPLVSVGRNEEEELIELLEDLDCELLIEEPYEEDEYSLYINALKVALIMKDWMDE 594 (715)
T ss_dssp HHHHHHHSCCCCHHHHHHHHHHSTTSCCCCCCHHHHHHHHHHHTTCSSCCSSCCCSSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhhccCCCHHHHHHHhhcCcccccCccChHHHHHHHHHHHhcchhhcccccccccchhhhHHHHHHHHHHHHHHcC
Confidence 9998877 478899999999999999999999999999998753 23344331 222 789999999999999
Q ss_pred ccCCC----Ccc-cchHHHHHHhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHccccCCCCccccCCCCCHHHHHHHH
Q 000129 1085 LKLEG----LSL-TSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLE 1159 (2114)
Q Consensus 1085 ~~~~~----~~l-~~d~~~i~~~a~rl~~a~~ei~~~~~~~~~~~~~~~l~~~~~~~~w~~~~~l~q~~~~~~~~~~~l~ 1159 (2114)
.+++. |++ .+|+.+++++|.||++|+++||...||...+..++.|++||++|+|++.+||+||||||+.++|+|+
T Consensus 595 ~~~~~i~~~y~~~~gdl~~l~~~a~~l~~a~~~i~~~~~~~~~~~~l~~l~~rl~~gv~~e~~~L~qlp~i~~~rar~L~ 674 (715)
T 2va8_A 595 VDEDTILSKYNIGSGDLRNMVETMDWLTYSAYHLSRELKLNEHADKLRILNLRVRDGIKEELLELVQISGVGRKRARLLY 674 (715)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCGGGHHHHTSTTCCHHHHHHHH
T ss_pred CCHHHHHHHHCCChhhHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCChhhcchhhCCCCCHHHHHHHH
Confidence 99865 888 5999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCC-chhhhccCChHHhhhhhcCchhHHHHHH-HHhcCCce
Q 000129 1160 KKDF-AWERYYDLSPQELGELIRFPKMGRTLHK-FVHQFPKL 1199 (2114)
Q Consensus 1160 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~P~~ 1199 (2114)
++|+ ++.++. .+++++.++++ ++.|++|++ +.+++|.+
T Consensus 675 ~~g~~s~~~l~-~~~~~l~~~l~-~~~~~~i~~~~~~~~~~~ 714 (715)
T 2va8_A 675 NNGIKELGDVV-MNPDKVKNLLG-QKLGEKVVQEAARLLNRF 714 (715)
T ss_dssp HTTCCSHHHHH-HCHHHHHHHHC-HHHHHHHHHHHHHHHC--
T ss_pred HcCCCCHHHHh-CCHHHHHHHhC-hhHHHHHHHHHHHhhccC
Confidence 9998 567777 79999999999 999999998 77778865
No 4
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=3.6e-81 Score=852.34 Aligned_cols=653 Identities=25% Similarity=0.368 Sum_probs=537.7
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
||+++++.| .||++|+|+|+++++.++ .++|++++||||||||++|.+++++.+..+ .+++|++|+
T Consensus 10 l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~-~~~~~lv~apTGsGKT~~~~l~il~~~~~~-----------~~~l~i~P~ 77 (702)
T 2p6r_A 10 ISSYAVGILKEEGIEELFPPQAEAVEKVF-SGKNLLLAMPTAAGKTLLAEMAMVREAIKG-----------GKSLYVVPL 77 (702)
T ss_dssp HHHHHHHHHHCC---CCCCCCHHHHHHHT-TCSCEEEECSSHHHHHHHHHHHHHHHHHTT-----------CCEEEEESS
T ss_pred cCHHHHHHHHhCCCCCCCHHHHHHHHHHh-CCCcEEEEcCCccHHHHHHHHHHHHHHHhC-----------CcEEEEeCc
Confidence 456667777 689999999999999854 567899999999999999999999987642 379999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-C
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N 638 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~ 638 (2114)
++||.|++++|+ .+..+|++|+.++|+..........++|+|+|||+|+.+.++.. .+++++++|||||+|++.+ .
T Consensus 78 r~La~q~~~~~~-~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~~~--~~l~~~~~vIiDE~H~l~~~~ 154 (702)
T 2p6r_A 78 RALAGEKYESFK-KWEKIGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRA--SWIKAVSCLVVDEIHLLDSEK 154 (702)
T ss_dssp HHHHHHHHHHHT-TTTTTTCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTC--SGGGGCCEEEETTGGGGGCTT
T ss_pred HHHHHHHHHHHH-HHHhcCCEEEEEeCCCCcchhhccCCCEEEECHHHHHHHHHcCh--hHHhhcCEEEEeeeeecCCCC
Confidence 999999999994 56677999999999987766666789999999999988887643 5688999999999999988 7
Q ss_pred CchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeecc---Cchh--
Q 000129 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQV---KKPL-- 713 (2114)
Q Consensus 639 rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~---~~~~-- 713 (2114)
||+.++.+++++.+ ..++.|+|+||||++|.++++.|++.. .+...+||+|+...+..... ....
T Consensus 155 r~~~~~~ll~~l~~----~~~~~~ii~lSATl~n~~~~~~~l~~~------~~~~~~r~~~l~~~~~~~~~~~~~~~~~~ 224 (702)
T 2p6r_A 155 RGATLEILVTKMRR----MNKALRVIGLSATAPNVTEIAEWLDAD------YYVSDWRPVPLVEGVLCEGTLELFDGAFS 224 (702)
T ss_dssp THHHHHHHHHHHHH----HCTTCEEEEEECCCTTHHHHHHHTTCE------EEECCCCSSCEEEEEECSSEEEEEETTEE
T ss_pred cccHHHHHHHHHHh----cCcCceEEEECCCcCCHHHHHHHhCCC------cccCCCCCccceEEEeeCCeeeccCcchh
Confidence 99999999988753 356899999999999999999999743 35678899998775532110 0000
Q ss_pred --HHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhh
Q 000129 714 --QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791 (2114)
Q Consensus 714 --~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ 791 (2114)
.... +...+.+.+ ..++++||||+|+++++.++..|.+.... ++..+.....++ .......+..|.+
T Consensus 225 ~~~~~~-~~~~~~~~~---~~~~~~LVF~~s~~~~~~~a~~L~~~~~~------~~~~~~~~~~i~-~~~~~~~~~~l~~ 293 (702)
T 2p6r_A 225 TSRRVK-FEELVEECV---AENGGVLVFESTRRGAEKTAVKLSAITAK------YVENEGLEKAIL-EENEGEMSRKLAE 293 (702)
T ss_dssp EEEECC-HHHHHHHHH---HTTCCEEEECSSHHHHHHHHHHHHHHHHT------TCCCSSHHHHHH-TTCCSHHHHHHHH
T ss_pred hhhhhh-HHHHHHHHH---hcCCCEEEEcCCHHHHHHHHHHHHHHHHh------hcChHHHHHHHH-hhccccccHHHHH
Confidence 0000 122222222 24789999999999999999999876422 122212112221 1222334566888
Q ss_pred hccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhccc
Q 000129 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRA 871 (2114)
Q Consensus 792 ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRA 871 (2114)
+++.|+++|||+|++++|..+++.|++|.++|||||+++++|||+|++++||+++..|| |.+.++|..+|+||+|||
T Consensus 294 ~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd---~~~~~~s~~~~~Qr~GRa 370 (702)
T 2p6r_A 294 CVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFD---GYSKRIKVSEYKQMAGRA 370 (702)
T ss_dssp HHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEES---SSEEECCHHHHHHHHTTB
T ss_pred HHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeC---CCCCcCCHHHHHHHhhhc
Confidence 88999999999999999999999999999999999999999999999999999999998 236788999999999999
Q ss_pred CCCCCCCceEEEEEcCCCcHHHHH-Hhh-cCCCcccchhhH--hhHHHHHHHHhhccccChHHHHHHHHhhHHHHhhccC
Q 000129 872 GRPQYDSYGEGIIITGHSELRYYL-SLM-NQQLPIESQFVS--KLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRN 947 (2114)
Q Consensus 872 GR~g~d~~G~~iil~~~~e~~~~~-~ll-~~~~pies~l~~--~l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~~r~~~n 947 (2114)
||+|+|..|.|+++++..+...+. +++ +.+.|++|++.. .+.++++++++.|++.+.+++.+|+++||+|+++. .
T Consensus 371 GR~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~-~ 449 (702)
T 2p6r_A 371 GRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNE-I 449 (702)
T ss_dssp SCTTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHC-C
T ss_pred CCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCceeecCcchhHHHHHHHHHHcCCCCCHHHHHHHHHhhhHHHhhh-H
Confidence 999999999999999998866544 344 578899999986 79999999999999999999999999999998753 1
Q ss_pred CcccCCCcccccccchhhhhhHHHHHHHHHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHHHHhhcCCC-CCH
Q 000129 948 PALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPT-MGD 1026 (2114)
Q Consensus 948 p~~y~~~~~~~~~~~~l~~~~~~li~~al~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~-~~~ 1026 (2114)
+..+.+++|+..|.+.|+|..+ +.+.+|++|+++|+||++|.|+++|+.+++.. .+.
T Consensus 450 -------------------~~~~~~~~al~~L~~~g~i~~~---~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (702)
T 2p6r_A 450 -------------------SLSYELERVVRQLENWGMVVEA---AHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSD 507 (702)
T ss_dssp -------------------CCHHHHHHHHHHHHHTTSEEES---SSEEECHHHHHHHHTTCCHHHHHHHHHHTTTCCCCH
T ss_pred -------------------HHHHHHHHHHHHHHHCcCeeEC---CeeccChHHHHHHHHhCCHHHHHHHHHHhhcccCCH
Confidence 1236789999999999999865 56899999999999999999999999999886 677
Q ss_pred HHHHHHhhCCccCCCCcCChhHHHHHHHHhcc-----CCCC-CCCC-CC--ChhHHHHHHHHHHHhcccCCC----Ccc-
Q 000129 1027 IELCRLFSLSEEFKYVTVRQDEKMELAKLLDR-----VPIP-VKES-LE--EPSAKINVLLQAYISQLKLEG----LSL- 1092 (2114)
Q Consensus 1027 ~~~l~i~s~s~ef~~i~~r~~e~~~l~~l~~~-----~~~~-~~~~-~~--~~~~K~~~llq~~i~~~~~~~----~~l- 1092 (2114)
.++|.++|+++||.++++|++| .++.+++.+ .++| +++. ++ .++.|+++|||+|||+.+++. |++
T Consensus 508 ~~~l~~i~~~~e~~~i~~r~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lL~~~~~~~~l~~i~~~~~~~ 586 (702)
T 2p6r_A 508 IGALHLICRTPDMERLTVRKTD-SWVEEEAFRLRKELSYYPSDFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIA 586 (702)
T ss_dssp HHHHHHHHHSTTSCCCCCCTTT-HHHHHHHHHHGGGSSCCCCTTSTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCC
T ss_pred HHHHHHhhCCcccccCCCCCch-HHHHHHHHhccccccCCcchhhhhhhhhhhhHHHHHHHHHHHcCCChHHHHHHhCCc
Confidence 8999999999999999999999 778777654 2334 2221 11 188999999999999999753 776
Q ss_pred cchHHHHHHhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHccccCCCCccccCCCCCHHHHHHHHhCCC-chhhhccC
Q 000129 1093 TSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF-AWERYYDL 1171 (2114)
Q Consensus 1093 ~~d~~~i~~~a~rl~~a~~ei~~~~~~~~~~~~~~~l~~~~~~~~w~~~~~l~q~~~~~~~~~~~l~~~~~-~~~~~~~~ 1171 (2114)
.+|+.+++++|.||++|+++||...||. .+++|++||.+|+|++.+||+|+|||+++++++|+++|+ ++.++.++
T Consensus 587 ~gdl~~i~~~a~~l~~a~~~i~~~~g~~----~l~~l~~ri~~gv~~~~~~L~qlp~v~~~~ar~l~~~g~~s~~~l~~~ 662 (702)
T 2p6r_A 587 PGDLRRIVETAEWLSNAMNRIAEEVGNT----SVSGLTERIKHGVKEELLELVRIRHIGRVRARKLYNAGIRNAEDIVRH 662 (702)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCC----SSTTHHHHHHHTCCGGGHHHHTSTTCCHHHHHHHHTTTCCSHHHHHHT
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHcCHH----HHHHHHHHHHcCCCcchHhhhcCCCCCHHHHHHHHHcCCCCHHHHHhh
Confidence 6999999999999999999999999997 778899999999999999999999999999999999998 67777777
Q ss_pred ChHHhhhhhcCchhHHHHHHHHhcCCceeEEEE
Q 000129 1172 SPQELGELIRFPKMGRTLHKFVHQFPKLILAAH 1204 (2114)
Q Consensus 1172 ~~~~~~~~~~~~~~~~~i~~~~~~~P~~~~~~~ 1204 (2114)
+ +++.++++ +++|++|++.++ +|.+++++.
T Consensus 663 ~-~~l~~ll~-~~~~~~i~~~~~-~p~~~~~~~ 692 (702)
T 2p6r_A 663 R-EKVASLIG-RGIAERVVEGIS-VKSLNPESA 692 (702)
T ss_dssp H-HHHHHHHC-HHHHHHHHHHHH-HHC------
T ss_pred h-HHHHHHhC-hhHHHHHHHhcC-CCccCcchh
Confidence 8 99999999 999999999999 999998753
No 5
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=4e-80 Score=844.40 Aligned_cols=651 Identities=25% Similarity=0.366 Sum_probs=537.8
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
.||+++++.| .||.+|+|+|.++++.++..++|++++||||||||++|.+++++.+... +.+++|++|
T Consensus 7 ~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~----------~~~~l~i~P 76 (720)
T 2zj8_A 7 RVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ----------GGKAVYIVP 76 (720)
T ss_dssp CSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH----------CSEEEEECS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC----------CCEEEEEcC
Confidence 3688999888 6899999999999998666788999999999999999999999888643 238999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-
Q 000129 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD- 637 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d- 637 (2114)
+++||.|++++|+ .+..+|++|+.++|+.....+....++|+|+|||+|+.+.+... .+++++++|||||+|++.+
T Consensus 77 ~raLa~q~~~~~~-~l~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~--~~l~~~~~vIiDE~H~l~~~ 153 (720)
T 2zj8_A 77 LKALAEEKFQEFQ-DWEKIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGS--SWIKDVKILVADEIHLIGSR 153 (720)
T ss_dssp SGGGHHHHHHHTG-GGGGGTCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHHTC--TTGGGEEEEEEETGGGGGCT
T ss_pred cHHHHHHHHHHHH-HHHhcCCEEEEecCCCCccccccCCCCEEEECHHHHHHHHHcCh--hhhhcCCEEEEECCcccCCC
Confidence 9999999999995 56667999999999988877777789999999999988887743 5688999999999999998
Q ss_pred CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEee-----ccCch
Q 000129 638 NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGI-----QVKKP 712 (2114)
Q Consensus 638 ~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~-----~~~~~ 712 (2114)
.||+.++.++.++. .++|+|+||||++|.++++.|++.. .+...+||+++...+..- .....
T Consensus 154 ~r~~~~~~ll~~l~-------~~~~ii~lSATl~n~~~~~~~l~~~------~~~~~~rp~~l~~~~~~~~~~~~~~~~~ 220 (720)
T 2zj8_A 154 DRGATLEVILAHML-------GKAQIIGLSATIGNPEELAEWLNAE------LIVSDWRPVKLRRGVFYQGFVTWEDGSI 220 (720)
T ss_dssp TTHHHHHHHHHHHB-------TTBEEEEEECCCSCHHHHHHHTTEE------EEECCCCSSEEEEEEEETTEEEETTSCE
T ss_pred cccHHHHHHHHHhh-------cCCeEEEEcCCcCCHHHHHHHhCCc------ccCCCCCCCcceEEEEeCCeeeccccch
Confidence 79999999988873 2799999999999999999999754 356788999987654321 11000
Q ss_pred hHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhh----cccCcch
Q 000129 713 LQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHT----DMVKSND 788 (2114)
Q Consensus 713 ~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~----~~~~~~~ 788 (2114)
.........+.+. ...++++||||+|+++|+.++..|.+.... ++. ......+.... ....+..
T Consensus 221 -~~~~~~~~~~~~~---~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~------~~~--~~~~~~~~~~~~~i~~~~~~~~ 288 (720)
T 2zj8_A 221 -DRFSSWEELVYDA---IRKKKGALIFVNMRRKAERVALELSKKVKS------LLT--KPEIRALNELADSLEENPTNEK 288 (720)
T ss_dssp -EECSSTTHHHHHH---HHTTCCEEEECSCHHHHHHHHHHHHHHHGG------GSC--HHHHHHHHHHHHTSCSCHHHHH
T ss_pred -hhhhHHHHHHHHH---HhCCCCEEEEecCHHHHHHHHHHHHHHHHH------hcC--hhhHHHHHHHHHHHhcccchHH
Confidence 0001111222221 124689999999999999999999876422 111 01111111111 1123345
Q ss_pred hhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhh
Q 000129 789 LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQML 868 (2114)
Q Consensus 789 L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~ 868 (2114)
|.++++.||++|||+|++.+|..+++.|++|.++|||||+++++|||+|++++||++++.|| .. ++.++|..+|+||+
T Consensus 289 l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd-~~-g~~~~s~~~~~Qr~ 366 (720)
T 2zj8_A 289 LAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYS-DF-GMERIPIIEVHQML 366 (720)
T ss_dssp HHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECC-SS-SCEECCHHHHHHHH
T ss_pred HHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeec-CC-CCccCCHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999999 22 36789999999999
Q ss_pred cccCCCCCCCceEEEEEcCCCcHHH-HHHhh-cCCCcccchhhH--hhHHHHHHHHhhccccChHHHHHHHHhhHHHHhh
Q 000129 869 GRAGRPQYDSYGEGIIITGHSELRY-YLSLM-NQQLPIESQFVS--KLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRM 944 (2114)
Q Consensus 869 GRAGR~g~d~~G~~iil~~~~e~~~-~~~ll-~~~~pies~l~~--~l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~~r~ 944 (2114)
|||||+|+|..|.||+++++.+... +.+++ +.+.|++|++.. .+.++++++++.|++.+.+++.+|+++||+|+++
T Consensus 367 GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~ 446 (720)
T 2zj8_A 367 GRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQR 446 (720)
T ss_dssp TTBCCTTTCSEEEEEEECSSSCHHHHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHC
T ss_pred hhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCcEeecCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHHhc
Confidence 9999999999999999999887654 44455 577899999976 7999999999999999999999999999999885
Q ss_pred ccCCcccCCCcccccccchhhhhhHHHHHHHHHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHHHHhhcCCC-
Q 000129 945 LRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPT- 1023 (2114)
Q Consensus 945 ~~np~~y~~~~~~~~~~~~l~~~~~~li~~al~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~- 1023 (2114)
.. ..++.+.++++++.|.+.|+|..+. ++.+.+|++|++||+||++|.|+++|+.+++..
T Consensus 447 ~~------------------~~~~~~~~~~~l~~L~~~~~i~~~~-~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~ 507 (720)
T 2zj8_A 447 KD------------------TYSLEEKIRNILYFLLENEFIEISL-EDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVV 507 (720)
T ss_dssp SC------------------CHHHHHHHHHHHHHHHHTTSEEECT-TSCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred cc------------------hHHHHHHHHHHHHHHHHCCCeeECC-CCcEeeChHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 31 1234578999999999999998322 366899999999999999999999999988773
Q ss_pred --CCHHHHHHHhhCCccCCCCcCChhHHHHHHHHhcc------CCCCCCCCCCC-------hhHHHHHHHHHHHhcccCC
Q 000129 1024 --MGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDR------VPIPVKESLEE-------PSAKINVLLQAYISQLKLE 1088 (2114)
Q Consensus 1024 --~~~~~~l~i~s~s~ef~~i~~r~~e~~~l~~l~~~------~~~~~~~~~~~-------~~~K~~~llq~~i~~~~~~ 1088 (2114)
.+..++|.++|+++||.++++|++|+.+|.+++.+ .++|++.+..+ ++.|+++|||+|||+.+++
T Consensus 508 ~~~~~~~~l~i~~~~~e~~~i~~r~~e~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~k~~llL~~~i~~~~l~ 587 (720)
T 2zj8_A 508 KDPNPIGIFHLISLTPDITPFNYSKREFERLEEEYYEFKDRLYFDDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEG 587 (720)
T ss_dssp HSCCHHHHHHHHHTSTTCCCCCCCHHHHHHHHHHHHHHGGGCSSCCTTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred cCCCHHHHHHHhccCccccccccCHHHHHHHHHHHHhccccccccccccccccchhhhhHHHHHHHHHHHHHHHhCCCHH
Confidence 67789999999999999999999999999988632 45676654233 7899999999999999974
Q ss_pred ----CCcc-cchHHHHHHhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHccccCCCCccccCCCCCHHHHHHHHhCCC
Q 000129 1089 ----GLSL-TSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF 1163 (2114)
Q Consensus 1089 ----~~~l-~~d~~~i~~~a~rl~~a~~ei~~~~~~~~~~~~~~~l~~~~~~~~w~~~~~l~q~~~~~~~~~~~l~~~~~ 1163 (2114)
+|++ .+|+.+++++|.||++|+++||...||...+..+..|++||.+++|++.+||.|+|||++.++++|+++|+
T Consensus 588 ~i~~~~~~~~gdl~~~~~~a~~l~~a~~~i~~~~g~~~~~~~l~~l~~rl~~gv~~e~~~L~qlp~v~~~rar~L~~~G~ 667 (720)
T 2zj8_A 588 EIVEKYSVEPGDIYRIVETAEWLVYSLKEIAKVLGAYEIVDYLETLRVRVKYGIREELIPLMQLPLVGRRRARALYNSGF 667 (720)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHTCCGGGGGGTTSTTCCHHHHHHHHTTTC
T ss_pred HHHHHhCCChHhHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHcCCCccchhhhhCCCCCHHHHHHHHHcCC
Confidence 4666 69999999999999999999999999986555555599999999999999999999999999999999998
Q ss_pred -chhhhccCChHHhhhhhcCchhHHHHHHHH
Q 000129 1164 -AWERYYDLSPQELGELIRFPKMGRTLHKFV 1193 (2114)
Q Consensus 1164 -~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 1193 (2114)
++.++.++++.++..+ +++|+++++.+
T Consensus 668 ~s~~dl~~~~~~~l~~~---~~~~~~i~~~~ 695 (720)
T 2zj8_A 668 RSIEDISQARPEELLKI---EGIGVKTVEAI 695 (720)
T ss_dssp CSHHHHHTCCHHHHHTS---TTCCHHHHHHH
T ss_pred CCHHHHHhCCHHHHHHh---HhHHHHHHHHH
Confidence 6788888899988877 56665555444
No 6
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.1e-72 Score=771.16 Aligned_cols=625 Identities=23% Similarity=0.333 Sum_probs=498.5
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
||..|+|+|+++++.++..++|++++||||||||++|++++++.+... ++ +++|++|+++||.|++++|+ +|...
T Consensus 20 g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~--~~l~i~P~raLa~q~~~~~~-~l~~~ 94 (720)
T 2zj8_A 20 GIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ--GG--KAVYIVPLKALAEEKFQEFQ-DWEKI 94 (720)
T ss_dssp TCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--CS--EEEEECSSGGGHHHHHHHTG-GGGGG
T ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--CC--EEEEEcCcHHHHHHHHHHHH-HHHhc
Confidence 699999999999999555688899999999999999999999988752 34 99999999999999999996 67654
Q ss_pred CCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC-CCCchHHHHHHHHHHHHh
Q 000129 1418 LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIAS 1496 (2114)
Q Consensus 1418 ~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~-~~g~~le~i~srl~~i~~ 1496 (2114)
|++++.++|+...+.+.+..++|+|+|||+|+.++++ ....++++++||+||+|++++ .+|+.++.++.+++
T Consensus 95 -g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~--~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~---- 167 (720)
T 2zj8_A 95 -GLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRH--GSSWIKDVKILVADEIHLIGSRDRGATLEVILAHML---- 167 (720)
T ss_dssp -TCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHH--TCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHB----
T ss_pred -CCEEEEecCCCCccccccCCCCEEEECHHHHHHHHHc--ChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhh----
Confidence 8999999999887766677889999999999999887 344589999999999999987 68999999988875
Q ss_pred hcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCC
Q 000129 1497 QVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKP 1576 (2114)
Q Consensus 1497 ~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 1576 (2114)
.+.|+|+||||++|++++++|++... +....||+|+...+.......+...........+..+...+.++++
T Consensus 168 ---~~~~ii~lSATl~n~~~~~~~l~~~~-----~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (720)
T 2zj8_A 168 ---GKAQIIGLSATIGNPEELAEWLNAEL-----IVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIRKKKG 239 (720)
T ss_dssp ---TTBEEEEEECCCSCHHHHHHHTTEEE-----EECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHHTTCC
T ss_pred ---cCCeEEEEcCCcCCHHHHHHHhCCcc-----cCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHhCCCC
Confidence 27999999999999999999998542 5667899998876532211111110001112223344444467899
Q ss_pred EEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhH----hhhhHHHHHHHhccceEeecCCCCHHHHHHHH
Q 000129 1577 ALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFI----DNIQEEMLKATLRHGVGYLHEGLNKTDQEVVS 1652 (2114)
Q Consensus 1577 ~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~----~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~ 1652 (2114)
+||||+|++.|+.++..|...+....... ....+.... ....+..+.+.+..||++|||+|+..+|..++
T Consensus 240 ~LVF~~sr~~~~~~a~~L~~~~~~~~~~~------~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~ 313 (720)
T 2zj8_A 240 ALIFVNMRRKAERVALELSKKVKSLLTKP------EIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVE 313 (720)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHGGGSCHH------HHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred EEEEecCHHHHHHHHHHHHHHHHHhcChh------hHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHH
Confidence 99999999999999999976543200000 000111111 11234558888899999999999999999999
Q ss_pred HHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHH
Q 000129 1653 ALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEY 1732 (2114)
Q Consensus 1653 ~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~ 1732 (2114)
+.|++|.++|||||+++++|||+|++.+||.++++|++. ...|.|..+|+||+|||||+|++..|.|++++.+.+.+.
T Consensus 314 ~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~--g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~ 391 (720)
T 2zj8_A 314 ENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDF--GMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPRE 391 (720)
T ss_dssp HHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSS--SCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHH
T ss_pred HHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCC--CCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHH
Confidence 999999999999999999999999999999999999943 357899999999999999999889999999999887443
Q ss_pred -HHHHHHhccCCCCcccc---------------C--CCccch---------------HHHHHHHHHHHHHHHHHCCCcee
Q 000129 1733 -YKKFLRLTQNPNYYNLQ---------------G--VSHRHL---------------SDHLSELVENTISDLEASKCIII 1779 (2114)
Q Consensus 1733 -~~~~lRl~~nP~~y~l~---------------~--~s~~~l---------------~~~lselve~~l~~L~~~~~I~~ 1779 (2114)
+++++.-.-.|-...+. + .+...+ ++++++.+++++..|.+.|+|.+
T Consensus 392 ~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~~ 471 (720)
T 2zj8_A 392 VMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEKIRNILYFLLENEFIEI 471 (720)
T ss_dssp HHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHCSCCHHHHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHhcCCCCCcEeecCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHHhccchHHHHHHHHHHHHHHHHCCCeeE
Confidence 44444111111111100 0 011112 23456789999999999999986
Q ss_pred cCCCccccCcccchhhhcccCHhHHHHHHhhcCCC---CChhhHHHHHhcCccccCCCCCcchHHHHHHHHhh-------
Q 000129 1780 EEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPK---TRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHH------- 1849 (2114)
Q Consensus 1780 ~~~~~~~~t~lG~i~s~y~i~~~T~~~f~~sl~~~---~~~~~iL~ils~a~Ef~~i~vR~~E~~~l~~L~~~------- 1849 (2114)
++++.+.+|++|+++|+||++|.|+++|..+++.. ....++|+++|.++||+.+++|++|+..+.++...
T Consensus 472 ~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~e~~~i~~r~~e~~~l~~~~~~~~~~~~~ 551 (720)
T 2zj8_A 472 SLEDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSKREFERLEEEYYEFKDRLYF 551 (720)
T ss_dssp CTTSCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHTSTTCCCCCCCHHHHHHHHHHHHHHGGGCSS
T ss_pred CCCCcEeeChHHHHHHHHcCCHHHHHHHHHHHHhhccCCCHHHHHHHhccCccccccccCHHHHHHHHHHHHhccccccc
Confidence 65667999999999999999999999999988764 66789999999999999999999999988887532
Q ss_pred -CCcccCCCC--CCC--hHHHHHHHHHHHhcCCCCCC------CchhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 000129 1850 -QRFSFENPK--FTD--PHVKANALLQAHFSRQQVGG------NLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAM 1918 (2114)
Q Consensus 1850 -~p~~~~~~~--~~~--~~~K~~lLLqahlsr~~lp~------~l~~D~~~il~~a~rLl~a~vdi~~~~g~l~~al~~m 1918 (2114)
.|++..... +.. +++|+++|||+|++|.+++. .+.+|+.+++++|.||++||+++|...||.. +..+|
T Consensus 552 ~~p~~~~~~~~~~~~~~~~~k~~llL~~~i~~~~l~~i~~~~~~~~gdl~~~~~~a~~l~~a~~~i~~~~g~~~-~~~~l 630 (720)
T 2zj8_A 552 DDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGDIYRIVETAEWLVYSLKEIAKVLGAYE-IVDYL 630 (720)
T ss_dssp CCTTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCGG-GHHHH
T ss_pred cccccccccchhhhhHHHHHHHHHHHHHHHhCCCHHHHHHHhCCChHhHHHHHHHHHHHHHHHHHHHHHcCcHH-HHHHH
Confidence 232221000 111 78999999999999998762 2689999999999999999999999999975 44566
Q ss_pred H-HHHHHHhccCCCCCccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhcCCc
Q 000129 1919 E-VSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPN 1994 (2114)
Q Consensus 1919 ~-L~q~i~Qg~w~~~s~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~~P~ 1994 (2114)
. |+|||.||+|++++||+|||||++.++++|+++| ++|++||++++++++..+-++++++++++..++.++|.
T Consensus 631 ~~l~~rl~~gv~~e~~~L~qlp~v~~~rar~L~~~G---~~s~~dl~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~ 704 (720)
T 2zj8_A 631 ETLRVRVKYGIREELIPLMQLPLVGRRRARALYNSG---FRSIEDISQARPEELLKIEGIGVKTVEAIFKFLGKNVK 704 (720)
T ss_dssp HHHHHHHHHTCCGGGGGGTTSTTCCHHHHHHHHTTT---CCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHC----
T ss_pred HHHHHHHHcCCCccchhhhhCCCCCHHHHHHHHHcC---CCCHHHHHhCCHHHHHHhHhHHHHHHHHHHHhcccccc
Confidence 5 9999999999999999999999999999999999 99999999999999998867999999999999999997
No 7
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.2e-72 Score=768.44 Aligned_cols=616 Identities=24% Similarity=0.364 Sum_probs=491.7
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
||.+|+|+|+++++.+++ ++|++++||||||||++|++++++.+.. ++ +++|++|+++||.|++++|+ ++...
T Consensus 22 g~~~l~~~Q~~~i~~i~~-~~~~lv~apTGsGKT~~~~l~il~~~~~---~~--~~l~i~P~r~La~q~~~~~~-~~~~~ 94 (702)
T 2p6r_A 22 GIEELFPPQAEAVEKVFS-GKNLLLAMPTAAGKTLLAEMAMVREAIK---GG--KSLYVVPLRALAGEKYESFK-KWEKI 94 (702)
T ss_dssp ---CCCCCCHHHHHHHTT-CSCEEEECSSHHHHHHHHHHHHHHHHHT---TC--CEEEEESSHHHHHHHHHHHT-TTTTT
T ss_pred CCCCCCHHHHHHHHHHhC-CCcEEEEcCCccHHHHHHHHHHHHHHHh---CC--cEEEEeCcHHHHHHHHHHHH-HHHhc
Confidence 689999999999999665 7789999999999999999999998765 44 89999999999999999995 67654
Q ss_pred CCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC-CCCchHHHHHHHHHHHHh
Q 000129 1418 LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIAS 1496 (2114)
Q Consensus 1418 ~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~-~~g~~le~i~srl~~i~~ 1496 (2114)
|++++.++|+.....+.+..++|+|+|||+|+.++++ ....++++++||+||+|.+++ .+|+.++.++.+++..
T Consensus 95 -g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~--~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~-- 169 (702)
T 2p6r_A 95 -GLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRN--RASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRM-- 169 (702)
T ss_dssp -TCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHT--TCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHH--
T ss_pred -CCEEEEEeCCCCcchhhccCCCEEEECHHHHHHHHHc--ChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhc--
Confidence 8999999999887766667889999999999999887 344589999999999999987 5899999999998865
Q ss_pred hcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHH----HhcCHHHHHHHHHHhc
Q 000129 1497 QVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARM----QAMTKPTFTAIVQHAK 1572 (2114)
Q Consensus 1497 ~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~l~ 1572 (2114)
+++.|+|+||||++|.+++++|++... +....||+|+..++.......+.... ..+. ....+...+.
T Consensus 170 --~~~~~ii~lSATl~n~~~~~~~l~~~~-----~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 240 (702)
T 2p6r_A 170 --NKALRVIGLSATAPNVTEIAEWLDADY-----YVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVK--FEELVEECVA 240 (702)
T ss_dssp --CTTCEEEEEECCCTTHHHHHHHTTCEE-----EECCCCSSCEEEEEECSSEEEEEETTEEEEEECC--HHHHHHHHHH
T ss_pred --CcCceEEEECCCcCCHHHHHHHhCCCc-----ccCCCCCccceEEEeeCCeeeccCcchhhhhhhh--HHHHHHHHHh
Confidence 568999999999999999999998542 56678999988765432211111000 0000 2334444446
Q ss_pred CCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCc--ccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHH
Q 000129 1573 NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPA--EEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEV 1650 (2114)
Q Consensus 1573 ~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~--~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~ 1650 (2114)
+++++||||++++.|+.++..|...+.. ++.... +.+........+..+.+.+..||++|||+|+.++|..
T Consensus 241 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~-------~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~ 313 (702)
T 2p6r_A 241 ENGGVLVFESTRRGAEKTAVKLSAITAK-------YVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRV 313 (702)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHHHHT-------TCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHH
T ss_pred cCCCEEEEcCCHHHHHHHHHHHHHHHHh-------hcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHH
Confidence 7899999999999999999999765432 111110 0000001122456788888899999999999999999
Q ss_pred HHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcH
Q 000129 1651 VSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRK 1730 (2114)
Q Consensus 1651 v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~ 1730 (2114)
+++.|++|.++|||||+++++|||+|++.+||.++++||+. ..|.|..+|+||+|||||+|++..|.|++++.+.+.
T Consensus 314 v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~---~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 390 (702)
T 2p6r_A 314 VEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGY---SKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDR 390 (702)
T ss_dssp HHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSS---EEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGH
T ss_pred HHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCC---CCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccH
Confidence 99999999999999999999999999999999999999933 689999999999999999998999999999998774
Q ss_pred HH-HHHHHHhccCCCC--cccc---------------C--CCccchHHHH-------------HHHHHHHHHHHHHCCCc
Q 000129 1731 EY-YKKFLRLTQNPNY--YNLQ---------------G--VSHRHLSDHL-------------SELVENTISDLEASKCI 1777 (2114)
Q Consensus 1731 ~~-~~~~lRl~~nP~~--y~l~---------------~--~s~~~l~~~l-------------selve~~l~~L~~~~~I 1777 (2114)
+. +++++ ...|.- -.+. + .+...+.+++ ++.+++++..|.+.|||
T Consensus 391 ~~~~~~~l--~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~~~~~~~~~~al~~L~~~g~i 468 (702)
T 2p6r_A 391 EIAVKRYI--FGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISLSYELERVVRQLENWGMV 468 (702)
T ss_dssp HHHHHTTT--SSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHh--cCCCCCceeecCcchhHHHHHHHHHHcCCCCCHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHCcCe
Confidence 43 22233 112211 1111 0 1122333332 46899999999999999
Q ss_pred eecCCCccccCcccchhhhcccCHhHHHHHHhhcCCC-CChhhHHHHHhcCccccCCCCCcchHHHHHHHHhh-CCcccC
Q 000129 1778 IIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPK-TRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHH-QRFSFE 1855 (2114)
Q Consensus 1778 ~~~~~~~~~~t~lG~i~s~y~i~~~T~~~f~~sl~~~-~~~~~iL~ils~a~Ef~~i~vR~~E~~~l~~L~~~-~p~~~~ 1855 (2114)
..+ +.+.+|++|+++|+||++|.|+++|..+++.. .+..++|+++|.++||..+++|++|+.....+.+. .++ .+
T Consensus 469 ~~~--~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~i~~r~~e~~~~~~~~~~~~~~-~~ 545 (702)
T 2p6r_A 469 VEA--AHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTDSWVEEEAFRLRKEL-SY 545 (702)
T ss_dssp EES--SSEEECHHHHHHHHTTCCHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCTTTHHHHHHHHHHGGGS-SC
T ss_pred eEC--CeeccChHHHHHHHHhCCHHHHHHHHHHhhcccCCHHHHHHHhhCCcccccCCCCCchHHHHHHHHhccccc-cC
Confidence 875 46899999999999999999999999988875 56679999999999999999999994444444331 232 11
Q ss_pred CCCCCC-------hHHHHHHHHHHHhcCCCCCC------CchhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000129 1856 NPKFTD-------PHVKANALLQAHFSRQQVGG------NLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQ 1922 (2114)
Q Consensus 1856 ~~~~~~-------~~~K~~lLLqahlsr~~lp~------~l~~D~~~il~~a~rLl~a~vdi~~~~g~l~~al~~m~L~q 1922 (2114)
.+.+.+ ++.|+++|||||++|.+++. .+.+|++.++++|.||++||++|+...||. .+++|+|
T Consensus 546 ~~~~~~~~~~~~~~~~k~~~lL~~~~~~~~l~~i~~~~~~~~gdl~~i~~~a~~l~~a~~~i~~~~g~~----~l~~l~~ 621 (702)
T 2p6r_A 546 YPSDFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAMNRIAEEVGNT----SVSGLTE 621 (702)
T ss_dssp CCCTTSTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCC----SSTTHHH
T ss_pred CcchhhhhhhhhhhhHHHHHHHHHHHcCCChHHHHHHhCCcHHhHHHHHHHHHHHHHHHHHHHHHcCHH----HHHHHHH
Confidence 112333 89999999999999998762 258999999999999999999999999997 6789999
Q ss_pred HHHhccCCCCCccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhcCCceEEEEE
Q 000129 1923 MVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFE 2000 (2114)
Q Consensus 1923 ~i~Qg~w~~~s~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~~P~i~v~~~ 2000 (2114)
||.||+|++++||+|||||++.++++|+++| ++|++||++++ +++..+++ +++.+.|.+.+. +|.+++++.
T Consensus 622 ri~~gv~~~~~~L~qlp~v~~~~ar~l~~~g---~~s~~~l~~~~-~~l~~ll~--~~~~~~i~~~~~-~p~~~~~~~ 692 (702)
T 2p6r_A 622 RIKHGVKEELLELVRIRHIGRVRARKLYNAG---IRNAEDIVRHR-EKVASLIG--RGIAERVVEGIS-VKSLNPESA 692 (702)
T ss_dssp HHHHTCCGGGHHHHTSTTCCHHHHHHHHTTT---CCSHHHHHHTH-HHHHHHHC--HHHHHHHHHHHH-HHC------
T ss_pred HHHcCCCcchHhhhcCCCCCHHHHHHHHHcC---CCCHHHHHhhh-HHHHHHhC--hhHHHHHHHhcC-CCccCcchh
Confidence 9999999999999999999999999999999 99999999999 88888887 899999999999 999998654
No 8
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.5e-70 Score=746.83 Aligned_cols=622 Identities=24% Similarity=0.343 Sum_probs=489.6
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
||.+|+|+|+++++.++..++|++++||||||||++|++++++.+.. .++ +++|++|+++||.|++++|+ ++...
T Consensus 27 g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~--~~~--~il~i~P~r~La~q~~~~~~-~~~~~ 101 (715)
T 2va8_A 27 GIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK--NGG--KAIYVTPLRALTNEKYLTFK-DWELI 101 (715)
T ss_dssp SCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH--SCS--EEEEECSCHHHHHHHHHHHG-GGGGG
T ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH--CCC--eEEEEeCcHHHHHHHHHHHH-HhhcC
Confidence 69999999999999966678899999999999999999999998875 244 99999999999999999995 67654
Q ss_pred CCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC-CCCchHHHHHHHHHHHHh
Q 000129 1418 LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIAS 1496 (2114)
Q Consensus 1418 ~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~-~~g~~le~i~srl~~i~~ 1496 (2114)
|++++.++|+.....+.+..++|+|+|||+|+.++++ ....++++++||+||+|.+++ .+|+.++.++.+++
T Consensus 102 -g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~--~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~---- 174 (715)
T 2va8_A 102 -GFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRH--RPEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAK---- 174 (715)
T ss_dssp -TCCEEECCSCSSSCCGGGGGCSEEEECHHHHHHHHHH--CCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHH----
T ss_pred -CCEEEEEeCCCCCchhhcCCCCEEEEcHHHHHHHHhC--ChhHhhccCEEEEechhhcCCcccchHHHHHHHhcc----
Confidence 8999999999877766667889999999999999887 344589999999999999987 57888888888776
Q ss_pred hcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccc------cchHH---HHHhcCHHHHHHH
Q 000129 1497 QVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDI------TNFEA---RMQAMTKPTFTAI 1567 (2114)
Q Consensus 1497 ~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~------~~~~~---~~~~~~~~~~~~i 1567 (2114)
+.|+|+||||++|++++++|++... +....||+|+..++..... ..+.. .........+..+
T Consensus 175 ----~~~ii~lSATl~n~~~~~~~l~~~~-----~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (715)
T 2va8_A 175 ----RRNLLALSATISNYKQIAKWLGAEP-----VATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYT 245 (715)
T ss_dssp ----TSEEEEEESCCTTHHHHHHHHTCEE-----EECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHH
T ss_pred ----cCcEEEEcCCCCCHHHHHHHhCCCc-----cCCCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHH
Confidence 6899999999999999999998542 5567899998866532110 00100 0000123345555
Q ss_pred HHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCC-CcccchhhHhh------hhHHHHHHHhccceEeec
Q 000129 1568 VQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLW-PAEEVEPFIDN------IQEEMLKATLRHGVGYLH 1640 (2114)
Q Consensus 1568 ~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~-~~~~l~~~~~~------i~d~~L~~~l~~gV~~~H 1640 (2114)
...+..++++||||+|+++|+.++..|....... ++.. ....+....+. ..+..+.+.+..||++||
T Consensus 246 ~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h 319 (715)
T 2va8_A 246 LDSLSKNGQVLVFRNSRKMAESTALKIANYMNFV------SLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHH 319 (715)
T ss_dssp HHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSS------CCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEEC
T ss_pred HHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhc------cCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEEC
Confidence 5555778999999999999999999997754320 0000 00111111111 234678888899999999
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcC-cCCCCCHhHHHHhHcccCCCCCCCce
Q 000129 1641 EGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQEN-AHTDYPVTDLLQMMGHASRPLLDNSG 1719 (2114)
Q Consensus 1641 ~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~-~~~~~s~~~~lQr~GRAGR~~~~~~G 1719 (2114)
|+|+..+|..+++.|++|.++|||||+++++|||+|++.+||.++++|+++.. ...|.|..+|+||+|||||+|++..|
T Consensus 320 ~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G 399 (715)
T 2va8_A 320 AGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIG 399 (715)
T ss_dssp TTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCE
T ss_pred CCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999994321 25799999999999999999988999
Q ss_pred EEEEEeecCcH--HHHHHHHHhccCCCC--ccccC----------------C-CccchHHHH----------HHHHHHHH
Q 000129 1720 KCVILCHAPRK--EYYKKFLRLTQNPNY--YNLQG----------------V-SHRHLSDHL----------SELVENTI 1768 (2114)
Q Consensus 1720 ~~iil~~~~~~--~~~~~~lRl~~nP~~--y~l~~----------------~-s~~~l~~~l----------selve~~l 1768 (2114)
.|++++.+.+. .++++++. ..|.- ..+.. . +...+.+++ ...+++++
T Consensus 400 ~~~~l~~~~~~~~~~~~~~l~--~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~al 477 (715)
T 2va8_A 400 ESIVVVRDKEDVDRVFKKYVL--SDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQLVDVYFDRAI 477 (715)
T ss_dssp EEEEECSCGGGHHHHHHHTTS--SCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred eEEEEeCCchHHHHHHHHHHc--CCCCCceecCCchhHHHHHHHHHHhccccCCHHHHHHHHHhhHHHhhcchHHHHHHH
Confidence 99999987763 34444441 22211 11111 0 112222322 23588999
Q ss_pred HHHHHCCCceecCCCccccCcccchhhhcccCHhHHHHHHhhcCC--CCChhhHHHHHhcCccccCCCCCcchHHHHHHH
Q 000129 1769 SDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTP--KTRMKGLLEVLASASEYAQLPIRPGEEEVVRRL 1846 (2114)
Q Consensus 1769 ~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~i~~~T~~~f~~sl~~--~~~~~~iL~ils~a~Ef~~i~vR~~E~~~l~~L 1846 (2114)
..|.+.|+|..+ ++.+.+|++|+++|+||++|.|+++|..++.. .....++|+++|.++||..+++|++|+..+.++
T Consensus 478 ~~L~~~g~i~~~-~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~~~~r~~e~~~l~~~ 556 (715)
T 2va8_A 478 RWLLEHSFIKEE-GNTFALTNFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLAFTPDGPLVSVGRNEEEELIEL 556 (715)
T ss_dssp HHHHHTTSEEEC-SSEEEECHHHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHHHHHHHHHSTTSCCCCCCHHHHHHHHHH
T ss_pred HHHHHCcCEeec-CCeEeeChHHHHHHHHcCCHhHHHHHHHHhhhccCCCHHHHHHHhhcCcccccCccChHHHHHHHHH
Confidence 999999999865 34689999999999999999999999988876 477899999999999999999999999999888
Q ss_pred Hh-hCCcccCCCCCCC-------hHHHHHHHHHHHhcCCCCCC-----Cc-hhhHHHHHHHHHHHHHHHHHHHHhcCCHH
Q 000129 1847 IH-HQRFSFENPKFTD-------PHVKANALLQAHFSRQQVGG-----NL-KLDQEEVLLSASRLLQAMVDVISSNGWLS 1912 (2114)
Q Consensus 1847 ~~-~~p~~~~~~~~~~-------~~~K~~lLLqahlsr~~lp~-----~l-~~D~~~il~~a~rLl~a~vdi~~~~g~l~ 1912 (2114)
.. +.+..+....+.. +++|+++|||+|++|.++.. .+ .+|+..++++|.||++|+.++|...||..
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~i~~~y~~~~gdl~~l~~~a~~l~~a~~~i~~~~~~~~ 636 (715)
T 2va8_A 557 LEDLDCELLIEEPYEEDEYSLYINALKVALIMKDWMDEVDEDTILSKYNIGSGDLRNMVETMDWLTYSAYHLSRELKLNE 636 (715)
T ss_dssp HTTCSSCCSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhcchhhcccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHCCChhhHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 54 3333221111222 78999999999999998752 22 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHH-HHhc
Q 000129 1913 LALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIAR-FCNR 1991 (2114)
Q Consensus 1913 ~al~~m~L~q~i~Qg~w~~~s~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~-~~~~ 1991 (2114)
.+..+++|++||.+|+|++.+||+|||||++.++++|+++| ++|+.||+ ++++++..+++ +.+.+.|++ +...
T Consensus 637 ~~~~l~~l~~rl~~gv~~e~~~L~qlp~i~~~rar~L~~~g---~~s~~~l~-~~~~~l~~~l~--~~~~~~i~~~~~~~ 710 (715)
T 2va8_A 637 HADKLRILNLRVRDGIKEELLELVQISGVGRKRARLLYNNG---IKELGDVV-MNPDKVKNLLG--QKLGEKVVQEAARL 710 (715)
T ss_dssp HHHHHHHHHHHHHHTCCGGGHHHHTSTTCCHHHHHHHHHTT---CCSHHHHH-HCHHHHHHHHC--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCChhhcchhhCCCCCHHHHHHHHHcC---CCCHHHHh-CCHHHHHHHhC--hhHHHHHHHHHHHh
Confidence 88889999999999999999999999999999999999999 99999999 99999999987 888888888 5555
Q ss_pred CCce
Q 000129 1992 FPNI 1995 (2114)
Q Consensus 1992 ~P~i 1995 (2114)
+|.+
T Consensus 711 ~~~~ 714 (715)
T 2va8_A 711 LNRF 714 (715)
T ss_dssp HC--
T ss_pred hccC
Confidence 6754
No 9
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=100.00 E-value=1.9e-62 Score=601.67 Aligned_cols=323 Identities=36% Similarity=0.678 Sum_probs=308.2
Q ss_pred cCCCccccCcccchhhhcccCHhHHHHHHhhcCCCCChhhHHHHHhcCccccCCCCCcchHHHHHHHHhhCCcccC-CCC
Q 000129 1780 EEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFE-NPK 1858 (2114)
Q Consensus 1780 ~~~~~~~~t~lG~i~s~y~i~~~T~~~f~~sl~~~~~~~~iL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~p~~~~-~~~ 1858 (2114)
++++.+.||++|+|||+|||+|.||+.|...+++.++..++|++||.|+||.++|+|++|+..|.+|++++|+++. +..
T Consensus 4 ~~~~~l~~t~lG~iaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~~~~~~~~~~ 83 (328)
T 3im1_A 4 EATEIISTLSNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKGDRALLVKLSKRLPLRFPEHTS 83 (328)
T ss_dssp CCCCCCTTSSSCBCCCCCCCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGGGSCCCTTHHHHHHHHHTTSSSCCCTTSC
T ss_pred cCCCCccCCchhHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHhccHHHHHhcccCcchHHHHHHHHHhCCCcccccCC
Confidence 4566799999999999999999999999999999999999999999999999999999999999999999998853 456
Q ss_pred CCChHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCCCCccccC
Q 000129 1859 FTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQL 1938 (2114)
Q Consensus 1859 ~~~~~~K~~lLLqahlsr~~lp~~l~~D~~~il~~a~rLl~a~vdi~~~~g~l~~al~~m~L~q~i~Qg~w~~~s~L~QL 1938 (2114)
+++|+.|+++||||||+|+++|.+|.+|+.+|+++|.||++||+||+...||+. ++++|+|+|||+||+|++++||+||
T Consensus 84 ~~~~~~K~~lLLqa~isr~~l~~~l~~D~~~V~~~a~rLl~al~di~~~~g~~~-~~~~l~L~q~i~q~~w~~~~pL~Ql 162 (328)
T 3im1_A 84 SGSVSFKVFLLLQAYFSRLELPVDFQNDLKDILEKVVPLINVVVDILSANGYLN-ATTAMDLAQMLIQGVWDVDNPLRQI 162 (328)
T ss_dssp SSSHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBTT-HHHHHHHHHHHHHTSCTTSCGGGGS
T ss_pred CCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHhhcCCCCCceeCC
Confidence 788999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred CCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhcCCceEEEEEEeccccccCCCcEEEEEE
Q 000129 1939 PHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVV 2018 (2114)
Q Consensus 1939 P~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~~P~i~v~~~v~~~~~v~~g~~~~l~v~ 2018 (2114)
|||+++++++|.++| ++|++||++++++++..++++++.++++|+++|++||+++|+++|.+++.|++|+.++|+|+
T Consensus 163 p~i~~~~~~~l~~~~---i~s~~~l~~~~~~e~~~ll~~~~~~~~~v~~~~~~~P~l~v~~~v~~~~~i~~~~~~~l~v~ 239 (328)
T 3im1_A 163 PHFNNKILEKCKEIN---VETVYDIMALEDEERDEILTLTDSQLAQVAAFVNNYPNVELTYSLNNSDSLISGVKQKITIQ 239 (328)
T ss_dssp TTCCHHHHHHHHHTT---CCSHHHHHHSCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEEETTGGGCCTTSEEEEEEE
T ss_pred CCCCHHHHHHHHhCC---CCCHHHHhcCCHHHHHhHhCCCHHHHHHHHHHHHhCCCEEEEEEecCCCcccCCCeEEEEEE
Confidence 999999999999999 99999999999999999999999999999999999999999999999889999999999999
Q ss_pred EEEcCCCCcccCccccCCCCCCccccEEEEEEECCCCeEEEEEEeeccc-ccEEEEEEEecCCCCceEEEEEEEecCccc
Q 000129 2019 LERDLEGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQR-KSRVKLDFAAPAEAGKKTYTLYFMCDSYMG 2097 (2114)
Q Consensus 2019 l~r~~~~~~~~~~v~ap~fp~~k~e~Wwlvvgd~~~~~L~~~krv~~~~-~~~~~l~f~~p~~~G~~~~~l~~~sDsY~G 2097 (2114)
++|+++. ..+.||||+||+.|.|+||++|||.++|+|+++||+++.+ .++++++|++|+ +|.|+|++|+|||||+|
T Consensus 240 l~~~~~~--~~~~~~ap~fp~~k~e~ww~~v~d~~~~~l~~~kr~~~~~~~~~~~~~f~~p~-~g~~~~~v~~vsD~ylG 316 (328)
T 3im1_A 240 LTRDVEP--ENLQVTSEKYPFDKLESWWLVLGEVSKKELYAIKKVTLNKETQQYELEFDTPT-SGKHNLTIWCVCDSYLD 316 (328)
T ss_dssp EEESSCC--SCCBCCCSSCCBCCBCCEEEEEEEGGGTEEEEEEEECCCSSEEEEEEEEECCC-SEEEEEEEEEEESSCSS
T ss_pred EEECCCC--CCCcEECCCCCCCccCCEEEEEEECCCCeEEEEeeecccccceEEEEEEEcCC-CCcEEEEEEEEecCCcc
Confidence 9997632 3468999999999999999999999999999999999975 788999999994 69999999999999999
Q ss_pred cCeEEEEEEEee
Q 000129 2098 CDQEYAFTVDVK 2109 (2114)
Q Consensus 2098 ~D~~~~~~~~V~ 2109 (2114)
||++++|+++|.
T Consensus 317 ~d~~~~~~l~V~ 328 (328)
T 3im1_A 317 ADKELSFEINVK 328 (328)
T ss_dssp CCEEEEEEEEEC
T ss_pred eeEEEEEEEEeC
Confidence 999999999984
No 10
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=100.00 E-value=7.4e-62 Score=598.59 Aligned_cols=323 Identities=57% Similarity=0.999 Sum_probs=279.7
Q ss_pred CccccCcccchhhhcccCHhHHHHHHhhcCCCCChhhHHHHHhcCccccCCCCCcchHHHHHHHHhhCCcccCCCCCCCh
Q 000129 1783 MDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDP 1862 (2114)
Q Consensus 1783 ~~~~~t~lG~i~s~y~i~~~T~~~f~~sl~~~~~~~~iL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~p~~~~~~~~~~~ 1862 (2114)
+.+.||++|+|||+|||++.|++.|...+++.++..++|++||.|+||.++|+|++|+..|.+|++++|++++.+.+++|
T Consensus 11 g~l~~t~lGriaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~EF~~i~vR~~E~~~l~~L~~~~~~~~~~~~~~~~ 90 (339)
T 2q0z_X 11 MDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDP 90 (339)
T ss_dssp --------------------------------CCHHHHHHHHHTSGGGTTCCCCTTCHHHHHHHHHHSSSCCSSCCTTCH
T ss_pred ceeccCcHHHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHHhchHHHhcCCCCcchHHHHHHHHHhCCCccccCCCCCH
Confidence 45889999999999999999999999999999999999999999999999999999999999999999998876678899
Q ss_pred HHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCCCCccccCCCCC
Q 000129 1863 HVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFM 1942 (2114)
Q Consensus 1863 ~~K~~lLLqahlsr~~lp~~l~~D~~~il~~a~rLl~a~vdi~~~~g~l~~al~~m~L~q~i~Qg~w~~~s~L~QLP~i~ 1942 (2114)
+.|+++||||||+|+++|.+|.+|+.+|+++|.||++||+||+...||+.+++++|+|+|||+||+|++++||+|||||+
T Consensus 91 ~~K~~lLLqa~isr~~l~~~l~~D~~~V~~~a~RLl~al~di~~~~g~~~~~~~~l~L~q~i~q~~w~~~~pL~Qlp~i~ 170 (339)
T 2q0z_X 91 HVKTNLLLQAHLSRMQLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFT 170 (339)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTCCTTSCGGGGSTTCC
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCceecCCCCC
Confidence 99999999999999999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhcCCceEEEEEEeccccccCCCcEEEEEEEEEc
Q 000129 1943 KDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERD 2022 (2114)
Q Consensus 1943 ~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~~P~i~v~~~v~~~~~v~~g~~~~l~v~l~r~ 2022 (2114)
++++++|.++| +.|+++|++++++++..+|++++.++++|+++|++||+++|+++|.+++.+++|+.++|+|+++|+
T Consensus 171 ~~~~~~l~~~~---i~s~~~l~~~~~~e~~~ll~l~~~~~~~i~~~~~~~P~l~v~~~v~~~~~i~~~~~~~l~v~l~~~ 247 (339)
T 2q0z_X 171 SEHIKRCTDKG---VESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLERE 247 (339)
T ss_dssp HHHHHHHHHTT---CCSHHHHHHSCHHHHHHHHCCCHHHHHHHHHHHTTSCCEEEEEEETTGGGCBTTSEEEEEEEEEEC
T ss_pred HHHHHHHHhcC---CCCHHHHHhCCHHHHHHHHCCCHHHHHHHHHHHHhCCcEEEEEEEccCccccCCCcEEEEEEEEEC
Confidence 99999999999 999999999999999999999999999999999999999999999998889999999999999996
Q ss_pred CCCCcccCccccCCCCCCccccEEEEEEECCCCeEEEEEEeecccccEEEEEEEecCCCCceEEEEEEEecCccccCeEE
Q 000129 2023 LEGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCDSYMGCDQEY 2102 (2114)
Q Consensus 2023 ~~~~~~~~~v~ap~fp~~k~e~Wwlvvgd~~~~~L~~~krv~~~~~~~~~l~f~~p~~~G~~~~~l~~~sDsY~G~D~~~ 2102 (2114)
++ ..+.||||+||+.|.|+||++|||.++|+|+++||+++.+..+++++|++| .+|.++|++++|||+|+|||+++
T Consensus 248 ~~---~~~~v~aP~fp~~k~e~wwi~v~d~~~~~ll~~~r~~l~~~~~~~l~f~~P-~~g~~~~~v~~vSD~ylG~D~~~ 323 (339)
T 2q0z_X 248 EE---VTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAP-ATGAHNYTLYFMSDAYMGCDQEY 323 (339)
T ss_dssp SS---CCSSCCCTTCSSCCCCCEEEEEEETTTTEEEEEEEECCSSEEEEEEEEECC-SSEEEEEEEEEEESSCSSCCEEE
T ss_pred CC---CCCceeCCCCCCCCCCcEEEEEEECCCCEEEEEEEEecccceEEEEEEECC-CCCCeeEEEEEEcccccCcceEE
Confidence 42 225899999999999999999999999999999999999888899999999 89999999999999999999999
Q ss_pred EEEEEeecCC
Q 000129 2103 AFTVDVKEAG 2112 (2114)
Q Consensus 2103 ~~~~~V~~~~ 2112 (2114)
+|+++|.+++
T Consensus 324 ~i~~~v~~~~ 333 (339)
T 2q0z_X 324 KFSVDVKEAE 333 (339)
T ss_dssp EEEEEEBCC-
T ss_pred EEEEEEecCc
Confidence 9999998875
No 11
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=100.00 E-value=3.4e-53 Score=521.53 Aligned_cols=307 Identities=24% Similarity=0.394 Sum_probs=258.3
Q ss_pred CCccccChhHHHHhhcccccccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChhHHHHHHHHhccCCCCCCC-CCCC
Q 000129 991 SGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKE-SLEE 1069 (2114)
Q Consensus 991 ~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~i~s~s~ef~~i~~r~~e~~~l~~l~~~~~~~~~~-~~~~ 1069 (2114)
.|.+.+|++|||||+|||+|.||+.|+..+++.++..++|++||.|.||.++++|++|+.+|.+|.+++|+|+++ .+++
T Consensus 10 ~g~l~~t~lGriaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~EF~~i~vR~~E~~~l~~L~~~~~~~~~~~~~~~ 89 (339)
T 2q0z_X 10 HMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFND 89 (339)
T ss_dssp ---------------------------------CCHHHHHHHHHTSGGGTTCCCCTTCHHHHHHHHHHSSSCCSSCCTTC
T ss_pred CceeccCcHHHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHHhchHHHhcCCCCcchHHHHHHHHHhCCCccccCCCCC
Confidence 477999999999999999999999999999999999999999999999999999999999999999999999964 5889
Q ss_pred hhHHHHHHHHHHHhcccCCCCcccchHHHHHHhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHccccCCCCccccCCC
Q 000129 1070 PSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNG 1149 (2114)
Q Consensus 1070 ~~~K~~~llq~~i~~~~~~~~~l~~d~~~i~~~a~rl~~a~~ei~~~~~~~~~~~~~~~l~~~~~~~~w~~~~~l~q~~~ 1149 (2114)
|+.|+|+||||||||++++ .+|.+|+.+|+++|.||++||+||+..+||+..+.++++|||||+||+|++++||+||||
T Consensus 90 ~~~K~~lLLqa~isr~~l~-~~l~~D~~~V~~~a~RLl~al~di~~~~g~~~~~~~~l~L~q~i~q~~w~~~~pL~Qlp~ 168 (339)
T 2q0z_X 90 PHVKTNLLLQAHLSRMQLS-AELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPH 168 (339)
T ss_dssp HHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTCCTTSCGGGGSTT
T ss_pred HHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCceecCCC
Confidence 9999999999999999998 699999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCC-chhhhccCChHHhhhhhcCch-hHHHHHHHHhcCCceeEEEEEee---c-cCceEEEEEEEccCC
Q 000129 1150 IPNEILMKLEKKDF-AWERYYDLSPQELGELIRFPK-MGRTLHKFVHQFPKLILAAHVQP---I-TRTVLKVELTITPDF 1223 (2114)
Q Consensus 1150 ~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~P~~~~~~~~~~---~-~~~~l~~~l~i~~~f 1223 (2114)
||++++++|+++|+ +++++.+++++++++++++++ .++.+++++++||++++++.++| | +++.++|.|++++++
T Consensus 169 i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~ll~l~~~~~~~i~~~~~~~P~l~v~~~v~~~~~i~~~~~~~l~v~l~~~~ 248 (339)
T 2q0z_X 169 FTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLEREE 248 (339)
T ss_dssp CCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHHCCCHHHHHHHHHHHTTSCCEEEEEEETTGGGCBTTSEEEEEEEEEECS
T ss_pred CCHHHHHHHHhcCCCCHHHHHhCCHHHHHHHHCCCHHHHHHHHHHHHhCCcEEEEEEEccCccccCCCcEEEEEEEEECC
Confidence 99999999999997 899999999999999999764 66999999999999999999996 6 478999999999999
Q ss_pred ccCCCCCCc------cccEEEEEEeCCCCeEEEEEeeeeeecccccccEEEEEeccCCCCCCeEEEEEeccccccCcccc
Q 000129 1224 LWDDKVHGY------VEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVL 1297 (2114)
Q Consensus 1224 ~~~~~~~~~------~~~~wi~v~d~~~~~i~~~~~~~l~~~~~~~~~~~~f~vp~~~p~p~~y~v~~vSD~wl~~e~~~ 1297 (2114)
+|+..+|++ .|.|||||+|++++.|++++++.++++ .++.++|++| +|++++|+++++||+|+||+...
T Consensus 249 ~~~~~v~aP~fp~~k~e~wwi~v~d~~~~~ll~~~r~~l~~~---~~~~l~f~~P--~~g~~~~~v~~vSD~ylG~D~~~ 323 (339)
T 2q0z_X 249 EVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQK---AKVKLDFVAP--ATGAHNYTLYFMSDAYMGCDQEY 323 (339)
T ss_dssp SCCSSCCCTTCSSCCCCCEEEEEEETTTTEEEEEEEECCSSE---EEEEEEEECC--SSEEEEEEEEEEESSCSSCCEEE
T ss_pred CCCCceeCCCCCCCCCCcEEEEEEECCCCEEEEEEEEecccc---eEEEEEEECC--CCCCeeEEEEEEcccccCcceEE
Confidence 999999865 466999999999999999999999873 4678999999 78999999999999999999999
Q ss_pred cccccc
Q 000129 1298 PVSFRH 1303 (2114)
Q Consensus 1298 ~is~~~ 1303 (2114)
+++|+-
T Consensus 324 ~i~~~v 329 (339)
T 2q0z_X 324 KFSVDV 329 (339)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 998763
No 12
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=100.00 E-value=2.2e-52 Score=512.62 Aligned_cols=306 Identities=24% Similarity=0.370 Sum_probs=282.5
Q ss_pred CCccccChhHHHHhhcccccccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChhHHHHHHHHhccCCCCC--CCCCC
Q 000129 991 SGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPV--KESLE 1068 (2114)
Q Consensus 991 ~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~i~s~s~ef~~i~~r~~e~~~l~~l~~~~~~~~--~~~~~ 1068 (2114)
++.+.+|++|+|||+|||+|.||+.|++.+++.++..++|+++|.|.||.++++|++|+.+|.+|..++|+|+ ++.++
T Consensus 6 ~~~l~~t~lG~iaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~~~~~~~~~~~~ 85 (328)
T 3im1_A 6 TEIISTLSNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKGDRALLVKLSKRLPLRFPEHTSSG 85 (328)
T ss_dssp CCCCTTSSSCBCCCCCCCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGGGSCCCTTHHHHHHHHHTTSSSCCCTTSCSS
T ss_pred CCCccCCchhHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHhccHHHHHhcccCcchHHHHHHHHHhCCCcccccCCCC
Confidence 5779999999999999999999999999999999999999999999999999999999999999999999986 56688
Q ss_pred ChhHHHHHHHHHHHhcccCCCCcccchHHHHHHhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHccccCCCCccccCC
Q 000129 1069 EPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFN 1148 (2114)
Q Consensus 1069 ~~~~K~~~llq~~i~~~~~~~~~l~~d~~~i~~~a~rl~~a~~ei~~~~~~~~~~~~~~~l~~~~~~~~w~~~~~l~q~~ 1148 (2114)
+|+.|+++||||||||++++. +|.+|+.+|+++|.||++||+|||..+||+. +.++++|||||+||+|++++||+|||
T Consensus 86 ~~~~K~~lLLqa~isr~~l~~-~l~~D~~~V~~~a~rLl~al~di~~~~g~~~-~~~~l~L~q~i~q~~w~~~~pL~Qlp 163 (328)
T 3im1_A 86 SVSFKVFLLLQAYFSRLELPV-DFQNDLKDILEKVVPLINVVVDILSANGYLN-ATTAMDLAQMLIQGVWDVDNPLRQIP 163 (328)
T ss_dssp SHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTBTT-HHHHHHHHHHHHHTSCTTSCGGGGST
T ss_pred CHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHhhcCCCCCceeCCC
Confidence 999999999999999999987 9999999999999999999999999999999 99999999999999999999999999
Q ss_pred CCCHHHHHHHHhCCC-chhhhccCChHHhhhhhcCc-hhHHHHHHHHhcCCceeEEEEEee---c-cCceEEEEEEEccC
Q 000129 1149 GIPNEILMKLEKKDF-AWERYYDLSPQELGELIRFP-KMGRTLHKFVHQFPKLILAAHVQP---I-TRTVLKVELTITPD 1222 (2114)
Q Consensus 1149 ~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~P~~~~~~~~~~---~-~~~~l~~~l~i~~~ 1222 (2114)
|||++++++|+++|+ +++++.++++++++++++++ +.++.+++++++||+++++++++| | +++.++|.|+++|+
T Consensus 164 ~i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~ll~~~~~~~~~v~~~~~~~P~l~v~~~v~~~~~i~~~~~~~l~v~l~~~ 243 (328)
T 3im1_A 164 HFNNKILEKCKEINVETVYDIMALEDEERDEILTLTDSQLAQVAAFVNNYPNVELTYSLNNSDSLISGVKQKITIQLTRD 243 (328)
T ss_dssp TCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEEETTGGGCCTTSEEEEEEEEEES
T ss_pred CCCHHHHHHHHhCCCCCHHHHhcCCHHHHHhHhCCCHHHHHHHHHHHHhCCCEEEEEEecCCCcccCCCeEEEEEEEEEC
Confidence 999999999999998 89999999999999999865 588999999999999999999986 7 57999999999999
Q ss_pred CccCCC-C------CCccccEEEEEEeCCCCeEEEEEeeeeeecccccccEEEEEeccCCCCCCeEEEEEeccccccCcc
Q 000129 1223 FLWDDK-V------HGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQT 1295 (2114)
Q Consensus 1223 f~~~~~-~------~~~~~~~wi~v~d~~~~~i~~~~~~~l~~~~~~~~~~~~f~vp~~~p~p~~y~v~~vSD~wl~~e~ 1295 (2114)
|.|++. + |+..|+|||||+|.++++|++.+++.+.+. ..++.++|.+| +|++++|+++++||+|+|+++
T Consensus 244 ~~~~~~~~~ap~fp~~k~e~ww~~v~d~~~~~l~~~kr~~~~~~--~~~~~~~f~~p--~~g~~~~~v~~vsD~ylG~d~ 319 (328)
T 3im1_A 244 VEPENLQVTSEKYPFDKLESWWLVLGEVSKKELYAIKKVTLNKE--TQQYELEFDTP--TSGKHNLTIWCVCDSYLDADK 319 (328)
T ss_dssp SCCSCCBCCCSSCCBCCBCCEEEEEEEGGGTEEEEEEEECCCSS--EEEEEEEEECC--CSEEEEEEEEEEESSCSSCCE
T ss_pred CCCCCCcEECCCCCCCccCCEEEEEEECCCCeEEEEeeeccccc--ceEEEEEEEcC--CCCcEEEEEEEEecCCcceeE
Confidence 999763 3 566778999999999999999999998652 23445555555 679999999999999999999
Q ss_pred ccccccc
Q 000129 1296 VLPVSFR 1302 (2114)
Q Consensus 1296 ~~~is~~ 1302 (2114)
..++.++
T Consensus 320 ~~~~~l~ 326 (328)
T 3im1_A 320 ELSFEIN 326 (328)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9888753
No 13
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-42 Score=477.97 Aligned_cols=395 Identities=25% Similarity=0.356 Sum_probs=294.2
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
++..|+|+|.++++.+..+ .++|++||||||||++|++|++..+..+ .+++|++|+++|+.|+++.|.
T Consensus 181 ~~f~ltp~Q~~AI~~i~~g-~dvLV~ApTGSGKTlva~l~i~~~l~~g-----------~rvlvl~PtraLa~Q~~~~l~ 248 (1108)
T 3l9o_A 181 YPFTLDPFQDTAISCIDRG-ESVLVSAHTSAGKTVVAEYAIAQSLKNK-----------QRVIYTSPIKALSNQKYRELL 248 (1108)
T ss_dssp CSSCCCHHHHHHHHHHTTT-CCEEEECCSSSHHHHHHHHHHHHHHHTT-----------CEEEEEESSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcC-CCEEEECCCCCChHHHHHHHHHHHHhcC-----------CeEEEEcCcHHHHHHHHHHHH
Confidence 3457999999999987554 6699999999999999999999988543 389999999999999999999
Q ss_pred HhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-CCchhHHHHHHHH
Q 000129 572 NRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVART 650 (2114)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~rl 650 (2114)
+.+. .|+.++|+.+... +++|+|+|||++..+..... ..+.++++|||||||++.+ +||..++.++..+
T Consensus 249 ~~~~----~VglltGd~~~~~----~~~IlV~Tpe~L~~~L~~~~--~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l 318 (1108)
T 3l9o_A 249 AEFG----DVGLMTGDITINP----DAGCLVMTTEILRSMLYRGS--EVMREVAWVIFDEVHYMRDKERGVVWEETIILL 318 (1108)
T ss_dssp HHTS----SEEEECSSCBCCC----SCSEEEEEHHHHHHHHHHCS--SHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHS
T ss_pred HHhC----CccEEeCccccCC----CCCEEEeChHHHHHHHHcCc--cccccCCEEEEhhhhhccccchHHHHHHHHHhc
Confidence 9875 5788999987653 58999999999844443332 4578999999999999988 6899888776543
Q ss_pred HHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccC---------ch--hHHHH-H
Q 000129 651 VRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVK---------KP--LQRFQ-L 718 (2114)
Q Consensus 651 ~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~---------~~--~~~~~-~ 718 (2114)
+..+|+|+||||+||..+++.|++.....+...+...++|+|+...++..... .. ...+. .
T Consensus 319 -------~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~ 391 (1108)
T 3l9o_A 319 -------PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKA 391 (1108)
T ss_dssp -------CTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHH
T ss_pred -------CCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHH
Confidence 67899999999999999999999876666778888889999987655421110 00 00000 0
Q ss_pred ---h------------------------------hHHHHHHHH--HHhCCCeEEEEecChHHHHHHHHHHHHHhhccccc
Q 000129 719 ---M------------------------------NDLCYEKVV--AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTL 763 (2114)
Q Consensus 719 ---~------------------------------~~~~~~~i~--~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l 763 (2114)
+ ...++..+. ...+.+++||||+|++.|..++..|...+......
T Consensus 392 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e 471 (1108)
T 3l9o_A 392 MASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDE 471 (1108)
T ss_dssp HTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC--
T ss_pred HHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHH
Confidence 0 111122111 12235699999999999999999987655443211
Q ss_pred ccccccC-chhHHHHHhhh-cccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEE
Q 000129 764 GRFLKED-SVSREILQSHT-DMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTV 841 (2114)
Q Consensus 764 ~~~l~~~-~~~~~~l~~~~-~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~v 841 (2114)
...+..- ......+.... .......+..++..||++|||+|++.+|..+++.|++|.++|||||+++++|||+|++++
T Consensus 472 ~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~ 551 (1108)
T 3l9o_A 472 KEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTV 551 (1108)
T ss_dssp --CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEE
T ss_pred HHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceE
Confidence 0000000 00000000000 001123466778899999999999999999999999999999999999999999999999
Q ss_pred EEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCC-cHHHHHHhh-cCCCcccchhhHhhHHHHH
Q 000129 842 IIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS-ELRYYLSLM-NQQLPIESQFVSKLADQLN 917 (2114)
Q Consensus 842 VI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~-e~~~~~~ll-~~~~pies~l~~~l~d~l~ 917 (2114)
||+++.+|++.. ..++|+.+|+||+|||||.|.|..|.||++++.. +...+..++ ..+.|++|+|.......+|
T Consensus 552 VI~~~~~~d~~~--~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~~~~~L~S~f~~~y~~iln 627 (1108)
T 3l9o_A 552 VFTSVRKWDGQQ--FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILN 627 (1108)
T ss_dssp EESCSEEESSSC--EEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_pred EEecCcccCccc--cccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhcCCCcccccccCCcHHHHHH
Confidence 999999999875 4578999999999999999999999999999875 455566664 4567999998764444444
No 14
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-41 Score=468.69 Aligned_cols=388 Identities=25% Similarity=0.375 Sum_probs=291.6
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
+|+ |+++|.++++.+..+ ++++++||||||||++|+++++..+..+ .++||++|+++|+.|+++.|.
T Consensus 84 ~f~-L~~~Q~eai~~l~~g-~~vLV~apTGSGKTlva~lai~~~l~~g-----------~rvL~l~PtkaLa~Q~~~~l~ 150 (1010)
T 2xgj_A 84 PFT-LDPFQDTAISCIDRG-ESVLVSAHTSAGKTVVAEYAIAQSLKNK-----------QRVIYTSPIKALSNQKYRELL 150 (1010)
T ss_dssp SSC-CCHHHHHHHHHHHHT-CEEEEECCTTSCHHHHHHHHHHHHHHTT-----------CEEEEEESSHHHHHHHHHHHH
T ss_pred CCC-CCHHHHHHHHHHHcC-CCEEEECCCCCChHHHHHHHHHHHhccC-----------CeEEEECChHHHHHHHHHHHH
Confidence 464 999999999987665 5699999999999999999999887532 389999999999999999999
Q ss_pred HhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-CCchhHHHHHHHH
Q 000129 572 NRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVART 650 (2114)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~rl 650 (2114)
+.++ +|+.++|+..... .++|+|+|||++..+..+.. ..++++++|||||||++.+ .||..++.++..+
T Consensus 151 ~~~~----~vglltGd~~~~~----~~~IvV~Tpe~L~~~L~~~~--~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l 220 (1010)
T 2xgj_A 151 AEFG----DVGLMTGDITINP----DAGCLVMTTEILRSMLYRGS--EVMREVAWVIFDEVHYMRDKERGVVWEETIILL 220 (1010)
T ss_dssp HHHS----CEEEECSSCEECT----TCSEEEEEHHHHHHHHHHTC--TTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHS
T ss_pred HHhC----CEEEEeCCCccCC----CCCEEEEcHHHHHHHHHcCc--chhhcCCEEEEechhhhcccchhHHHHHHHHhc
Confidence 9875 6888999987653 58999999999855444432 5678999999999999998 6999998776543
Q ss_pred HHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeec---------cCch------hHH
Q 000129 651 VRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQ---------VKKP------LQR 715 (2114)
Q Consensus 651 ~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~---------~~~~------~~~ 715 (2114)
+..+|+|+||||+||..+++.|+..........+...++|+|+...++... .... ...
T Consensus 221 -------~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (1010)
T 2xgj_A 221 -------PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKA 293 (1010)
T ss_dssp -------CTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHH
T ss_pred -------CCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHH
Confidence 568999999999999999999998654556777777889999877665311 0000 000
Q ss_pred HHHh------------------------------hHHHHHHH--HHHhCCCeEEEEecChHHHHHHHHHHHHHhhccccc
Q 000129 716 FQLM------------------------------NDLCYEKV--VAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTL 763 (2114)
Q Consensus 716 ~~~~------------------------------~~~~~~~i--~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l 763 (2114)
...+ ...+...+ ....+..++||||+|++.|+.++..|...+.....-
T Consensus 294 ~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e 373 (1010)
T 2xgj_A 294 MASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDE 373 (1010)
T ss_dssp HHTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHH
T ss_pred HHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHH
Confidence 0000 00111111 112235699999999999999999886533221100
Q ss_pred ccccccCchhHHHHHhhhccc--------CcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcC
Q 000129 764 GRFLKEDSVSREILQSHTDMV--------KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVN 835 (2114)
Q Consensus 764 ~~~l~~~~~~~~~l~~~~~~~--------~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVd 835 (2114)
............... ....+..++..||++|||||++.+|..+++.|++|.++|||||+++++|||
T Consensus 374 ------~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GID 447 (1010)
T 2xgj_A 374 ------KEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLN 447 (1010)
T ss_dssp ------HHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTT
T ss_pred ------HHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCC
Confidence 000000111111111 113455677899999999999999999999999999999999999999999
Q ss_pred CCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCC-cHHHHHHhh-cCCCcccchhhHhhH
Q 000129 836 LPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS-ELRYYLSLM-NQQLPIESQFVSKLA 913 (2114)
Q Consensus 836 lP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~-e~~~~~~ll-~~~~pies~l~~~l~ 913 (2114)
+|++++||++...||... +.++|+.+|+||+|||||.|.|..|.||+++++. +...+..++ ....|++|+|.....
T Consensus 448 iP~~~vVI~~~~kfd~~~--~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~~~~~~l~s~f~~~~~ 525 (1010)
T 2xgj_A 448 MPAKTVVFTSVRKWDGQQ--FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYN 525 (1010)
T ss_dssp CCBSEEEESCSEEECSSC--EEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHSCCCCCCCCCCCCCHH
T ss_pred CCCceEEEeCCcccCCcC--CccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHhCCCcccccccCCcHH
Confidence 999999999888888754 4567999999999999999999899999999875 666666664 456789999875444
Q ss_pred HHHH
Q 000129 914 DQLN 917 (2114)
Q Consensus 914 d~l~ 917 (2114)
..+|
T Consensus 526 ~iln 529 (1010)
T 2xgj_A 526 MILN 529 (1010)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 15
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=4.4e-41 Score=447.85 Aligned_cols=368 Identities=19% Similarity=0.248 Sum_probs=273.2
Q ss_pred ccccCCCChhhHhhc--CCCCCCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcE
Q 000129 476 LIKISEMPEWAQPAF--KGMTQLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYK 552 (2114)
Q Consensus 476 l~~i~~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~k 552 (2114)
+.....|++++..++ .||.+|+|+|.++++.++.+ +.++|++||||||||++|++|+++.+...... ...+++
T Consensus 73 l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~----~~~~~~ 148 (563)
T 3i5x_A 73 LLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD----SQYMVK 148 (563)
T ss_dssp HHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS----STTSCC
T ss_pred HhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc----ccCCee
Confidence 334455889988887 68999999999999999964 56899999999999999999999998875422 123468
Q ss_pred EEEEcccHHHHHHHHHHHHHhhcc----CCcEEEEEeCCCccChhh----hccceEEEcCHhHHHHHHhccCCCcccccc
Q 000129 553 IVYVAPMKALVAEVVGNLSNRLQM----YDVKVRELSGDQTLTRQQ----IEETQIIVTTPEKWDIITRKSGDRTYTQLV 624 (2114)
Q Consensus 553 il~iaP~raLa~q~~~~~~~~~~~----~gi~v~~l~Gd~~~~~~~----~~~~~IiV~TPek~d~l~r~~~~~~~l~~v 624 (2114)
+|||+||++||.|+++.+++++.. .++.+..++|+....... ...++|+|+||+++..+.++.. ...++.+
T Consensus 149 ~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~-~~~~~~~ 227 (563)
T 3i5x_A 149 AVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYS-NKFFRFV 227 (563)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH-HHHCTTC
T ss_pred EEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhcc-ccccccc
Confidence 999999999999999999986542 246688888887654432 3478999999999843333321 1356789
Q ss_pred cEEEEeccccccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCCh-HHHHHHHhccccCceEeec--CCcccc--
Q 000129 625 KLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY-EDVALFLRVNLEKGLFYFD--NSYRPV-- 698 (2114)
Q Consensus 625 ~liIiDEaH~l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~-~dva~~l~~~~~~~~~~f~--~~~rpv-- 698 (2114)
++|||||||++.+ .+++.++.++..+..........+|+++||||+|+. ..+..++...+ ....+. ....+.
T Consensus 228 ~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 305 (563)
T 3i5x_A 228 DYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKK--ECLFLDTVDKNEPEAH 305 (563)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSS--EEEEEESSCSSSCSSC
T ss_pred eEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCC--ceEEEeccCCCCcccc
Confidence 9999999999988 689999999888766554455688999999999863 33333322221 111111 111111
Q ss_pred -cceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHH
Q 000129 699 -PLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREIL 777 (2114)
Q Consensus 699 -~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l 777 (2114)
.+.+.+.... ........+...+...+.....++++||||+|++.|..++..|......
T Consensus 306 ~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~------------------ 365 (563)
T 3i5x_A 306 ERIDQSVVISE--KFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKK------------------ 365 (563)
T ss_dssp TTEEEEEEEES--STTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTT------------------
T ss_pred ccCceEEEECc--hhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccC------------------
Confidence 1222222221 1122222233333444444455789999999999999999998865211
Q ss_pred HhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccc
Q 000129 778 QSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWT 857 (2114)
Q Consensus 778 ~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~ 857 (2114)
...+..|||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ |+++.
T Consensus 366 ----------------~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~----~~~p~---- 421 (563)
T 3i5x_A 366 ----------------DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ----IGVPS---- 421 (563)
T ss_dssp ----------------TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE----ESCCS----
T ss_pred ----------------CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEE----ECCCC----
Confidence 145788999999999999999999999999999999999999999999999 55554
Q ss_pred cCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcHHHHHHhh
Q 000129 858 ELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLM 898 (2114)
Q Consensus 858 ~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~~ll 898 (2114)
+..+|+||+|||||.| ..|.|++++...+..++..+.
T Consensus 422 --s~~~y~Qr~GRagR~g--~~g~~i~~~~~~e~~~~~~l~ 458 (563)
T 3i5x_A 422 --ELANYIHRIGRTARSG--KEGSSVLFICKDELPFVRELE 458 (563)
T ss_dssp --STTHHHHHHTTSSCTT--CCEEEEEEEEGGGHHHHHHHH
T ss_pred --chhhhhhhcCccccCC--CCceEEEEEchhHHHHHHHHH
Confidence 6678999999999987 679999999998888777764
No 16
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.1e-39 Score=418.90 Aligned_cols=337 Identities=17% Similarity=0.270 Sum_probs=258.9
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
.|++++...+ .||.+|+|+|.++++.++.+ .+++++||||||||++|++|++..+...... ....++++||++|
T Consensus 62 ~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g-~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~---~~~~~~~~lil~P 137 (434)
T 2db3_A 62 DLRDIIIDNVNKSGYKIPTPIQKCSIPVISSG-RDLMACAQTGSGKTAAFLLPILSKLLEDPHE---LELGRPQVVIVSP 137 (434)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHHHHSCCC---CCTTCCSEEEECS
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CCEEEECCCCCCchHHHHHHHHHHHHhcccc---cccCCccEEEEec
Confidence 4788888887 79999999999999998876 5599999999999999999999998765321 1124568999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHH-HHHHhccCCCcccccccEEEEecccc
Q 000129 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~ 634 (2114)
|++||.|+++.+.++....++++..++|+.....+. ..+++|+|+||+++ +.+.+.. ..++++++||+||||+
T Consensus 138 treLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~---~~l~~~~~lVlDEah~ 214 (434)
T 2db3_A 138 TRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTF---ITFEDTRFVVLDEADR 214 (434)
T ss_dssp SHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTS---CCCTTCCEEEEETHHH
T ss_pred CHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCC---cccccCCeEEEccHhh
Confidence 999999999999998888889999999998765432 35789999999998 5554432 4578899999999999
Q ss_pred ccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCc--ccccceeEEEeeccCc
Q 000129 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSY--RPVPLSQQYIGIQVKK 711 (2114)
Q Consensus 635 l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~--rpv~l~~~~~~~~~~~ 711 (2114)
+.+ ++++.+..++..+ ......|++++|||+| ..+..+.........+...... ....+.+.+..+...
T Consensus 215 ~~~~gf~~~~~~i~~~~-----~~~~~~q~l~~SAT~~--~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~- 286 (434)
T 2db3_A 215 MLDMGFSEDMRRIMTHV-----TMRPEHQTLMFSATFP--EEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKY- 286 (434)
T ss_dssp HTSTTTHHHHHHHHHCT-----TSCSSCEEEEEESCCC--HHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGG-
T ss_pred hhccCcHHHHHHHHHhc-----CCCCCceEEEEeccCC--HHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcH-
Confidence 987 5777766665432 1256789999999998 4555555544333333322211 122334444333222
Q ss_pred hhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhh
Q 000129 712 PLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791 (2114)
Q Consensus 712 ~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ 791 (2114)
.+... +.+.+.. . ..++||||+|++.+..++..|...+
T Consensus 287 --~k~~~----l~~~l~~-~-~~~~lVF~~t~~~a~~l~~~L~~~~---------------------------------- 324 (434)
T 2db3_A 287 --AKRSK----LIEILSE-Q-ADGTIVFVETKRGADFLASFLSEKE---------------------------------- 324 (434)
T ss_dssp --GHHHH----HHHHHHH-C-CTTEEEECSSHHHHHHHHHHHHHTT----------------------------------
T ss_pred --HHHHH----HHHHHHh-C-CCCEEEEEeCcHHHHHHHHHHHhCC----------------------------------
Confidence 12222 2222222 2 3359999999999999999887643
Q ss_pred hccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhccc
Q 000129 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRA 871 (2114)
Q Consensus 792 ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRA 871 (2114)
..+..+||+|++.+|..+++.|++|..+|||||+++++|+|+|++++||+ ||++. +..+|+||+|||
T Consensus 325 ---~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~----~d~p~------~~~~y~qriGR~ 391 (434)
T 2db3_A 325 ---FPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVIN----YDMPS------KIDDYVHRIGRT 391 (434)
T ss_dssp ---CCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEE----SSCCS------SHHHHHHHHTTS
T ss_pred ---CCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEE----ECCCC------CHHHHHHHhccc
Confidence 34677899999999999999999999999999999999999999999999 77665 788999999999
Q ss_pred CCCCCCCceEEEEEcCCC
Q 000129 872 GRPQYDSYGEGIIITGHS 889 (2114)
Q Consensus 872 GR~g~d~~G~~iil~~~~ 889 (2114)
||.| ..|.+++++++.
T Consensus 392 gR~g--~~G~a~~~~~~~ 407 (434)
T 2db3_A 392 GRVG--NNGRATSFFDPE 407 (434)
T ss_dssp SCTT--CCEEEEEEECTT
T ss_pred ccCC--CCCEEEEEEecc
Confidence 9988 679999998854
No 17
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.5e-39 Score=433.33 Aligned_cols=383 Identities=20% Similarity=0.266 Sum_probs=275.9
Q ss_pred EecCCCCCCCCCCCCCccccCCCChhhHhhc--CCCCCCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHH
Q 000129 460 IHVPAMKHKPLDPNEKLIKISEMPEWAQPAF--KGMTQLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQL 536 (2114)
Q Consensus 460 i~vp~~~~~~~~~~~~l~~i~~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l 536 (2114)
+++|.....+...-+.+.....|++++..++ .||.+|+|+|.++++.++.+ +.+++++||||||||++|++|+++.+
T Consensus 6 ~~~~~~~~~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l 85 (579)
T 3sqw_A 6 IHVPKEDNSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHL 85 (579)
T ss_dssp EEECCCSSCCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EecCccCCCCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHH
Confidence 4555543332222223333455899999888 78999999999999999954 56799999999999999999999998
Q ss_pred HhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhc----cCCcEEEEEeCCCccChhh----hccceEEEcCHhHH
Q 000129 537 ALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ----MYDVKVRELSGDQTLTRQQ----IEETQIIVTTPEKW 608 (2114)
Q Consensus 537 ~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~----~~gi~v~~l~Gd~~~~~~~----~~~~~IiV~TPek~ 608 (2114)
...... ...++++|||+||++|+.|+++.+.+++. ...+.+..+.|+....... ...++|+|+||+++
T Consensus 86 ~~~~~~----~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l 161 (579)
T 3sqw_A 86 INTKFD----SQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRL 161 (579)
T ss_dssp HHTTTS----STTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHH
T ss_pred Hhcccc----ccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHH
Confidence 775321 12356899999999999999999998763 2346788888887654432 23689999999998
Q ss_pred -HHHHhccCCCcccccccEEEEeccccccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccC
Q 000129 609 -DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEK 686 (2114)
Q Consensus 609 -d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~ 686 (2114)
+.+.+.. ...++.+++|||||||++.+ .+++.++.++..+..........+|+++||||+++. +..+.......
T Consensus 162 ~~~l~~~~--~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~--v~~~~~~~l~~ 237 (579)
T 3sqw_A 162 IDVLEKYS--NKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDK--VQKLANNIMNK 237 (579)
T ss_dssp HHHHHHHH--HHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTH--HHHHTTTTCCS
T ss_pred HHHHHhcc--ccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChH--HHHHHHHHcCC
Confidence 4444331 13567899999999999988 588888888877755444445578999999999862 33333222222
Q ss_pred ce-EeecC--Ccccc---cceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcc
Q 000129 687 GL-FYFDN--SYRPV---PLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALEN 760 (2114)
Q Consensus 687 ~~-~~f~~--~~rpv---~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~ 760 (2114)
+. ..... ...+. .+.+.+.... . .......+...+...+.....+.++||||+|++.|..++..|......
T Consensus 238 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~- 314 (579)
T 3sqw_A 238 KECLFLDTVDKNEPEAHERIDQSVVISE-K-FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKK- 314 (579)
T ss_dssp SEEEEEESSCSSSCSSCTTEEEEEEEES-S-TTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTT-
T ss_pred CceEEEeecCccccccccccceEEEEec-c-hhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcC-
Confidence 11 11111 11111 1222222221 1 112222222333333444345779999999999999999998764211
Q ss_pred cccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceE
Q 000129 761 DTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHT 840 (2114)
Q Consensus 761 ~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~ 840 (2114)
...+..+||+|++.+|..+++.|++|.++|||||+++++|||+|+++
T Consensus 315 ---------------------------------~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~ 361 (579)
T 3sqw_A 315 ---------------------------------DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVH 361 (579)
T ss_dssp ---------------------------------TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCC
T ss_pred ---------------------------------CCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCC
Confidence 13578899999999999999999999999999999999999999999
Q ss_pred EEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcHHHHHHhh
Q 000129 841 VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLM 898 (2114)
Q Consensus 841 vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~~ll 898 (2114)
+||+ |+++. +..+|+||+|||||.| ..|.|++++...+..++..+.
T Consensus 362 ~VI~----~~~p~------s~~~y~Qr~GRagR~g--~~g~~i~~~~~~e~~~~~~l~ 407 (579)
T 3sqw_A 362 EVLQ----IGVPS------ELANYIHRIGRTARSG--KEGSSVLFICKDELPFVRELE 407 (579)
T ss_dssp EEEE----ESCCS------STTHHHHHHTTSSCTT--CCEEEEEEEEGGGHHHHHHHH
T ss_pred EEEE----cCCCC------CHHHhhhhccccccCC--CCceEEEEEcccHHHHHHHHH
Confidence 9999 55554 5668999999999987 679999999998887776653
No 18
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=2.5e-39 Score=448.44 Aligned_cols=381 Identities=26% Similarity=0.401 Sum_probs=288.8
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.|+++|.++++.++.+ ++++++||||||||++|++++...+..+ .++||++|+++|+.|++++|.+.+
T Consensus 39 ~l~~~Q~~aI~~il~g-~~vlv~apTGsGKTlv~~~~i~~~~~~g-----------~~vlvl~PtraLa~Q~~~~l~~~~ 106 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQG-DSVFVAAHTSAGKTVVAEYAIAMAHRNM-----------TKTIYTSPIKALSNQKFRDFKETF 106 (997)
T ss_dssp CCCHHHHHHHHHHHTT-CEEEEECCTTSCSHHHHHHHHHHHHHTT-----------CEEEEEESCGGGHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHcC-CCEEEEECCCCcHHHHHHHHHHHHHhcC-----------CeEEEEeCCHHHHHHHHHHHHHHc
Confidence 5899999999988776 5699999999999999999998876432 389999999999999999999876
Q ss_pred ccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-CCchhHHHHHHHHHHH
Q 000129 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQ 653 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~rl~~~ 653 (2114)
. +++++.++|+..... .++|+|+|||++....... ...+.++++|||||||++.+ ++|..++.++..
T Consensus 107 ~--~~~v~~l~G~~~~~~----~~~IlV~Tpe~L~~~l~~~--~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~---- 174 (997)
T 4a4z_A 107 D--DVNIGLITGDVQINP----DANCLIMTTEILRSMLYRG--ADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIM---- 174 (997)
T ss_dssp ----CCEEEECSSCEECT----TSSEEEEEHHHHHHHHHHT--CSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHH----
T ss_pred C--CCeEEEEeCCCccCC----CCCEEEECHHHHHHHHHhC--chhhcCCCEEEEECcccccccchHHHHHHHHHh----
Confidence 5 678999999876543 5899999999984333332 24678899999999999988 699999987654
Q ss_pred HhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEee-------ccCch--hHHHH----H--
Q 000129 654 IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGI-------QVKKP--LQRFQ----L-- 718 (2114)
Q Consensus 654 ~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~-------~~~~~--~~~~~----~-- 718 (2114)
.+..+++|+||||+||..+++.|++......++.+...+||+|+...+... ..... ...+. .
T Consensus 175 ---l~~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 251 (997)
T 4a4z_A 175 ---LPQHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILN 251 (997)
T ss_dssp ---SCTTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC
T ss_pred ---cccCCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhh
Confidence 357899999999999999999999876667788899999999998765420 00000 00000 0
Q ss_pred -------------------------------------------------------------------hhHHHHHHHH---
Q 000129 719 -------------------------------------------------------------------MNDLCYEKVV--- 728 (2114)
Q Consensus 719 -------------------------------------------------------------------~~~~~~~~i~--- 728 (2114)
.....+..+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l 331 (997)
T 4a4z_A 252 GESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYL 331 (997)
T ss_dssp -----------------------------------------------------------------CCCCTTHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHH
Confidence 0000111122
Q ss_pred HHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcc--------cCcchhhhhccCceEEe
Q 000129 729 AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDM--------VKSNDLKDLLPYGFAIH 800 (2114)
Q Consensus 729 ~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~--------~~~~~L~~ll~~gv~~h 800 (2114)
...+..++||||+|++.|+.++..|...+...... ...-.......... .....+..++..||++|
T Consensus 332 ~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e------~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~ 405 (997)
T 4a4z_A 332 RKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKE------KSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVH 405 (997)
T ss_dssp HHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHH------HHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEE
T ss_pred HhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHH------HHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeee
Confidence 22235699999999999999999886543221100 00000111111111 11234677888999999
Q ss_pred cCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCce
Q 000129 801 HAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYG 880 (2114)
Q Consensus 801 Hagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G 880 (2114)
||+|++.+|..+++.|++|.++|||||+++++|||+|+++|||.+...||+.. ..++|..+|+||+|||||.|.+..|
T Consensus 406 H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi~~~~k~dg~~--~~~~s~~~y~Qr~GRAGR~G~~~~G 483 (997)
T 4a4z_A 406 HGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNG--LRELTPGEFTQMAGRAGRRGLDSTG 483 (997)
T ss_dssp CTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEEEESCSEEEETTE--EEECCHHHHHHHHGGGCCTTTCSSE
T ss_pred cCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCceEEEeccccccCcc--CCCCCHHHHhHHhcccccCCCCcce
Confidence 99999999999999999999999999999999999999999998888888653 5688999999999999999999999
Q ss_pred EEEEEcC--CCcHHHHHHh-hcCCCcccchhhH
Q 000129 881 EGIIITG--HSELRYYLSL-MNQQLPIESQFVS 910 (2114)
Q Consensus 881 ~~iil~~--~~e~~~~~~l-l~~~~pies~l~~ 910 (2114)
.+|+++. ..+...+.++ ...+.|++|++..
T Consensus 484 ~vi~l~~~~~~~~~~~~~~i~~~~~~l~s~~~~ 516 (997)
T 4a4z_A 484 TVIVMAYNSPLSIATFKEVTMGVPTRLQSQFRL 516 (997)
T ss_dssp EEEEECCSSCCCHHHHHHHHHSCCCCCCCCCCC
T ss_pred EEEEecCCCcchHHHHHHHhcCCCccccccccc
Confidence 9999994 3455666665 4467788887754
No 19
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=4.8e-39 Score=428.31 Aligned_cols=368 Identities=17% Similarity=0.227 Sum_probs=273.7
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcC-CCcEEEEecCCCchHHHHHHHHHHHhhhccC--CCceEEEEEcccHHH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNT-DDNVLVAAPTGSGKTICSEFAILRNHQKASE--TGVMRAVYIAPLEAL 1402 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~-~~nvli~ApTGSGKTl~~~l~il~~l~~~~~--~~~~k~l~I~Ptr~L 1402 (2114)
|.....+.+.. ||..|+|+|.++++.++.+ +.+++++||||||||++|++|+++.+..... ..++++|||+||++|
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~L 158 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 158 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHH
Confidence 55666666655 7999999999999999964 5689999999999999999999999877421 123489999999999
Q ss_pred HHHHHHHHHHHhcC---CCCcEEEEEcCCcccch--hh--ccCCcEEEEChhhHHHHHhhhcccccccceeEEEeccccc
Q 000129 1403 AKERYRDWEIKFGQ---GLGMRVVELTGETAMDL--KL--LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHL 1475 (2114)
Q Consensus 1403 a~q~~~~~~~~f~~---~~g~~v~~l~G~~~~~~--~~--l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~ 1475 (2114)
|.|+++.+++.+.. ..+..+..+.|+..... .. ...++|+|+||++|..+++++. ...++++++||+||||+
T Consensus 159 a~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~-~~~~~~~~~lViDEah~ 237 (563)
T 3i5x_A 159 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYS-NKFFRFVDYKVLDEADR 237 (563)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH-HHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhcc-ccccccceEEEEeCHHH
Confidence 99999999964432 12456777788765432 12 2367999999999988887642 33578899999999999
Q ss_pred ccCC-CCchHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHHHhcCCCCcee-ecCCCCCcc---CcEEEEecccc
Q 000129 1476 IGGQ-GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLF-NFPPGVRPV---PLEIHIQGVDI 1549 (2114)
Q Consensus 1476 l~~~-~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~wl~~~~~~~~-~f~~~~rpv---~l~~~~~~~~~ 1549 (2114)
+.++ .++.++.++..+.........+.|+++||||+++. .+++.++...+..++ .......+. .+...+.. .
T Consensus 238 l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 315 (563)
T 3i5x_A 238 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVI--S 315 (563)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEE--E
T ss_pred HhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEE--C
Confidence 9875 47788888888777655556688999999999884 455555544432222 211111111 11111111 1
Q ss_pred cchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHH
Q 000129 1550 TNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLK 1629 (2114)
Q Consensus 1550 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~ 1629 (2114)
.................+... ..++++||||+|++.|..++..|.....
T Consensus 316 ~~~~~~~~~~~~~l~~~~~~~-~~~~~~iVF~~s~~~~~~l~~~L~~~~~------------------------------ 364 (563)
T 3i5x_A 316 EKFANSIFAAVEHIKKQIKER-DSNYKAIIFAPTVKFTSFLCSILKNEFK------------------------------ 364 (563)
T ss_dssp SSTTHHHHHHHHHHHHHHHHT-TTCCEEEEECSCHHHHHHHHHHHHHHHT------------------------------
T ss_pred chhHhhHHHHHHHHHHHHhhc-CCCCcEEEEcCcHHHHHHHHHHHHHhcc------------------------------
Confidence 111122211112222222222 5677899999999999999977743211
Q ss_pred HHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcc
Q 000129 1630 ATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGH 1709 (2114)
Q Consensus 1630 ~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GR 1709 (2114)
.+..+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++.+|| +++.|.+..+|+||+||
T Consensus 365 --~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI----------~~~~p~s~~~y~Qr~GR 432 (563)
T 3i5x_A 365 --KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVL----------QIGVPSELANYIHRIGR 432 (563)
T ss_dssp --TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEE----------EESCCSSTTHHHHHHTT
T ss_pred --CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEE----------EECCCCchhhhhhhcCc
Confidence 134689999999999999999999999999999999999999999999999 88899999999999999
Q ss_pred cCCCCCCCceEEEEEeecCcHHHHHHHHHhccC
Q 000129 1710 ASRPLLDNSGKCVILCHAPRKEYYKKFLRLTQN 1742 (2114)
Q Consensus 1710 AGR~~~~~~G~~iil~~~~~~~~~~~~lRl~~n 1742 (2114)
|||. +..|.|++++...+..+++.+.+...-
T Consensus 433 agR~--g~~g~~i~~~~~~e~~~~~~l~~~~~~ 463 (563)
T 3i5x_A 433 TARS--GKEGSSVLFICKDELPFVRELEDAKNI 463 (563)
T ss_dssp SSCT--TCCEEEEEEEEGGGHHHHHHHHHHHCC
T ss_pred cccC--CCCceEEEEEchhHHHHHHHHHHHhCC
Confidence 9998 678999999999998888888765443
No 20
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-38 Score=441.93 Aligned_cols=364 Identities=26% Similarity=0.431 Sum_probs=275.4
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000129 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~ 1418 (2114)
|. |+|+|.++++.+.. +++++|+||||||||++|+++++..+.. ++ ++||++|+++|+.|++++|++.|+
T Consensus 85 f~-L~~~Q~eai~~l~~-g~~vLV~apTGSGKTlva~lai~~~l~~---g~--rvL~l~PtkaLa~Q~~~~l~~~~~--- 154 (1010)
T 2xgj_A 85 FT-LDPFQDTAISCIDR-GESVLVSAHTSAGKTVVAEYAIAQSLKN---KQ--RVIYTSPIKALSNQKYRELLAEFG--- 154 (1010)
T ss_dssp SC-CCHHHHHHHHHHHH-TCEEEEECCTTSCHHHHHHHHHHHHHHT---TC--EEEEEESSHHHHHHHHHHHHHHHS---
T ss_pred CC-CCHHHHHHHHHHHc-CCCEEEECCCCCChHHHHHHHHHHHhcc---CC--eEEEECChHHHHHHHHHHHHHHhC---
Confidence 64 99999999999877 5569999999999999999999988754 44 999999999999999999997775
Q ss_pred CcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCC-CCchHHHHHHHHHHHHhh
Q 000129 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGPVLEVIVSRMRYIASQ 1497 (2114)
Q Consensus 1419 g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~-~g~~le~i~srl~~i~~~ 1497 (2114)
+++.++|+...+ ..++|+|+|||+|..++.++ ...+.++++|||||+|.+.+. +|..++.++..
T Consensus 155 --~vglltGd~~~~----~~~~IvV~Tpe~L~~~L~~~--~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~------- 219 (1010)
T 2xgj_A 155 --DVGLMTGDITIN----PDAGCLVMTTEILRSMLYRG--SEVMREVAWVIFDEVHYMRDKERGVVWEETIIL------- 219 (1010)
T ss_dssp --CEEEECSSCEEC----TTCSEEEEEHHHHHHHHHHT--CTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHH-------
T ss_pred --CEEEEeCCCccC----CCCCEEEEcHHHHHHHHHcC--cchhhcCCEEEEechhhhcccchhHHHHHHHHh-------
Confidence 588899988755 35799999999998887763 456899999999999999875 67777766543
Q ss_pred cCCCceEEEEcccCCChhHHHHHhcCCC-CceeecCCCCCccCcEEEEecccc---------------cchHHHHHhcC-
Q 000129 1498 VENKIRIVALSTSLANAKDLGEWIGATS-HGLFNFPPGVRPVPLEIHIQGVDI---------------TNFEARMQAMT- 1560 (2114)
Q Consensus 1498 ~~~~~riV~lSATl~n~~dla~wl~~~~-~~~~~f~~~~rpv~l~~~~~~~~~---------------~~~~~~~~~~~- 1560 (2114)
++...++|+||||++|..++++|++... .....+....||+|+..++..... ..+...+..+.
T Consensus 220 l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 299 (1010)
T 2xgj_A 220 LPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISN 299 (1010)
T ss_dssp SCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-
T ss_pred cCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhh
Confidence 3678999999999999999999997432 234445557788888776643110 00111111000
Q ss_pred ----------------------------HHHHHHHHHHh--cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccC
Q 000129 1561 ----------------------------KPTFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLL 1610 (2114)
Q Consensus 1561 ----------------------------~~~~~~i~~~l--~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~ 1610 (2114)
......+...+ ....++||||+|++.|+.++..|..........
T Consensus 300 ~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e------ 373 (1010)
T 2xgj_A 300 QIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDE------ 373 (1010)
T ss_dssp -----------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHH------
T ss_pred hhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHH------
Confidence 11112222222 245689999999999999997774311000000
Q ss_pred CCcccchhhHh------------hhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCc
Q 000129 1611 WPAEEVEPFID------------NIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAH 1678 (2114)
Q Consensus 1611 ~~~~~l~~~~~------------~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~ 1678 (2114)
...+..... ......+...+..||++|||+|++.+|..+++.|++|.++|||||+++++|||+|++
T Consensus 374 --~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~ 451 (1010)
T 2xgj_A 374 --KEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAK 451 (1010)
T ss_dssp --HHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBS
T ss_pred --HHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCc
Confidence 000000000 011245667788899999999999999999999999999999999999999999999
Q ss_pred EEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecC-cHHHHHHHH
Q 000129 1679 LVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP-RKEYYKKFL 1737 (2114)
Q Consensus 1679 ~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~-~~~~~~~~l 1737 (2114)
++||.++.+|++..+ .|.+..+|+||+|||||.|.+..|.|++++.+. +...+++++
T Consensus 452 ~vVI~~~~kfd~~~~--rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~ 509 (1010)
T 2xgj_A 452 TVVFTSVRKWDGQQF--RWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMV 509 (1010)
T ss_dssp EEEESCSEEECSSCE--EECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHH
T ss_pred eEEEeCCcccCCcCC--ccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHH
Confidence 999988888987643 478999999999999999888899999999876 556666665
No 21
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-39 Score=448.84 Aligned_cols=373 Identities=25% Similarity=0.395 Sum_probs=274.2
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000129 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~ 1418 (2114)
+..|+|+|.++++.+.+ +++++++||||||||++|++|++..+.. ++ +++|++|+++|+.|++++|++.++
T Consensus 182 ~f~ltp~Q~~AI~~i~~-g~dvLV~ApTGSGKTlva~l~i~~~l~~---g~--rvlvl~PtraLa~Q~~~~l~~~~~--- 252 (1108)
T 3l9o_A 182 PFTLDPFQDTAISCIDR-GESVLVSAHTSAGKTVVAEYAIAQSLKN---KQ--RVIYTSPIKALSNQKYRELLAEFG--- 252 (1108)
T ss_dssp SSCCCHHHHHHHHHHTT-TCCEEEECCSSSHHHHHHHHHHHHHHHT---TC--EEEEEESSHHHHHHHHHHHHHHTS---
T ss_pred CCCCCHHHHHHHHHHHc-CCCEEEECCCCCChHHHHHHHHHHHHhc---CC--eEEEEcCcHHHHHHHHHHHHHHhC---
Confidence 45799999999999876 4569999999999999999999998855 45 999999999999999999997665
Q ss_pred CcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCC-CCchHHHHHHHHHHHHhh
Q 000129 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGPVLEVIVSRMRYIASQ 1497 (2114)
Q Consensus 1419 g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~-~g~~le~i~srl~~i~~~ 1497 (2114)
.++.++|+.+.+ ..++|+|+||++|..++.+ ....+.++++|||||||++.+. +|..++.++. .
T Consensus 253 --~VglltGd~~~~----~~~~IlV~Tpe~L~~~L~~--~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~-------~ 317 (1108)
T 3l9o_A 253 --DVGLMTGDITIN----PDAGCLVMTTEILRSMLYR--GSEVMREVAWVIFDEVHYMRDKERGVVWEETII-------L 317 (1108)
T ss_dssp --SEEEECSSCBCC----CSCSEEEEEHHHHHHHHHH--CSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHH-------H
T ss_pred --CccEEeCccccC----CCCCEEEeChHHHHHHHHc--CccccccCCEEEEhhhhhccccchHHHHHHHHH-------h
Confidence 478899988754 4579999999999888776 3345889999999999999874 4555555443 3
Q ss_pred cCCCceEEEEcccCCChhHHHHHhcCCC-CceeecCCCCCccCcEEEEeccccc---------------chHHHHHhcC-
Q 000129 1498 VENKIRIVALSTSLANAKDLGEWIGATS-HGLFNFPPGVRPVPLEIHIQGVDIT---------------NFEARMQAMT- 1560 (2114)
Q Consensus 1498 ~~~~~riV~lSATl~n~~dla~wl~~~~-~~~~~f~~~~rpv~l~~~~~~~~~~---------------~~~~~~~~~~- 1560 (2114)
++.+.|+|+||||++|..+++.|++... .....+....+|+|+..++...... .+...+..+.
T Consensus 318 l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~ 397 (1108)
T 3l9o_A 318 LPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISN 397 (1108)
T ss_dssp SCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC--
T ss_pred cCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHh
Confidence 4678999999999999999999997643 2355566678999988766422110 0111110000
Q ss_pred ----------------------------HHHHHHHHHHh--cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccc---c
Q 000129 1561 ----------------------------KPTFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKS---A 1607 (2114)
Q Consensus 1561 ----------------------------~~~~~~i~~~l--~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~---~ 1607 (2114)
......+...+ ...+++||||+|++.|..++..|............ .
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~ 477 (1108)
T 3l9o_A 398 QIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTK 477 (1108)
T ss_dssp ---------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHH
T ss_pred hhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 11122222221 34568999999999999999887443221111000 0
Q ss_pred ccCCCcccchhhHh-hhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeee
Q 000129 1608 FLLWPAEEVEPFID-NIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQ 1686 (2114)
Q Consensus 1608 ~l~~~~~~l~~~~~-~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~ 1686 (2114)
++......+...-. ......+...+..||++|||+|++.+|..+++.|++|.++|||||+++++|||+|++++||....
T Consensus 478 ~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~ 557 (1108)
T 3l9o_A 478 IFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVR 557 (1108)
T ss_dssp HGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSE
T ss_pred HHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCc
Confidence 00000000000000 00124466778889999999999999999999999999999999999999999999999998888
Q ss_pred EecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecC-cHHHHHHHH
Q 000129 1687 YYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP-RKEYYKKFL 1737 (2114)
Q Consensus 1687 ~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~-~~~~~~~~l 1737 (2114)
.|++..+ .|.|..+|+||+|||||.|.+..|.|++++.+. ....+++++
T Consensus 558 ~~d~~~~--r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~ 607 (1108)
T 3l9o_A 558 KWDGQQF--RWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMV 607 (1108)
T ss_dssp EESSSCE--EECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHH
T ss_pred ccCcccc--ccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHh
Confidence 8887743 367999999999999999888999999999876 455566666
No 22
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=2.8e-38 Score=406.01 Aligned_cols=334 Identities=18% Similarity=0.266 Sum_probs=248.0
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccC---CCceEEEEEcccHH
Q 000129 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE---TGVMRAVYIAPLEA 1401 (2114)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~---~~~~k~l~I~Ptr~ 1401 (2114)
.|.....+.+.. ||..|+|+|.++++.++.+ ++++++||||||||++|++|++.++..... .+++++||++||++
T Consensus 62 ~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g-~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~Ptre 140 (434)
T 2db3_A 62 DLRDIIIDNVNKSGYKIPTPIQKCSIPVISSG-RDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRE 140 (434)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHH
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHH
Confidence 455556666654 7999999999999999875 459999999999999999999999876321 22458999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEEcCCcccch--h-hccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC
Q 000129 1402 LAKERYRDWEIKFGQGLGMRVVELTGETAMDL--K-LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (2114)
Q Consensus 1402 La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~--~-~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~ 1478 (2114)
||.|+++.++ ++....+++++.++|+..... . ....++|+|+||+++..++.+. ...+.+++++|+||||++.+
T Consensus 141 La~Q~~~~~~-~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~--~~~l~~~~~lVlDEah~~~~ 217 (434)
T 2db3_A 141 LAIQIFNEAR-KFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRT--FITFEDTRFVVLDEADRMLD 217 (434)
T ss_dssp HHHHHHHHHH-HHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT--SCCCTTCCEEEEETHHHHTS
T ss_pred HHHHHHHHHH-HHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhC--CcccccCCeEEEccHhhhhc
Confidence 9999999998 566666888999999877542 2 2345699999999998887763 34588999999999999887
Q ss_pred CCCchHHHHHHHHHHHHhh--cCCCceEEEEcccCCCh-hHHHH-HhcCCCCceeecCCC-CCccCcEEEEecccccchH
Q 000129 1479 QGGPVLEVIVSRMRYIASQ--VENKIRIVALSTSLANA-KDLGE-WIGATSHGLFNFPPG-VRPVPLEIHIQGVDITNFE 1553 (2114)
Q Consensus 1479 ~~g~~le~i~srl~~i~~~--~~~~~riV~lSATl~n~-~dla~-wl~~~~~~~~~f~~~-~rpv~l~~~~~~~~~~~~~ 1553 (2114)
.+ +...++.+... .....|++++|||+++. ..++. |+.. . ..+..... .....+...+.......
T Consensus 218 ~g------f~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~-~-~~i~~~~~~~~~~~i~~~~~~~~~~~-- 287 (434)
T 2db3_A 218 MG------FSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKN-Y-VFVAIGIVGGACSDVKQTIYEVNKYA-- 287 (434)
T ss_dssp TT------THHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSS-C-EEEEESSTTCCCTTEEEEEEECCGGG--
T ss_pred cC------cHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccC-C-EEEEeccccccccccceEEEEeCcHH--
Confidence 64 23333444333 25678999999999753 23332 3321 1 11111111 11112222222211111
Q ss_pred HHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhc
Q 000129 1554 ARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLR 1633 (2114)
Q Consensus 1554 ~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~ 1633 (2114)
.. .....++.. ...++||||++++.|..++..|.. .+
T Consensus 288 k~------~~l~~~l~~--~~~~~lVF~~t~~~a~~l~~~L~~-----------------------------------~~ 324 (434)
T 2db3_A 288 KR------SKLIEILSE--QADGTIVFVETKRGADFLASFLSE-----------------------------------KE 324 (434)
T ss_dssp HH------HHHHHHHHH--CCTTEEEECSSHHHHHHHHHHHHH-----------------------------------TT
T ss_pred HH------HHHHHHHHh--CCCCEEEEEeCcHHHHHHHHHHHh-----------------------------------CC
Confidence 10 111122222 234599999999999999876632 24
Q ss_pred cceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCC
Q 000129 1634 HGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRP 1713 (2114)
Q Consensus 1634 ~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~ 1713 (2114)
..+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++.+|| +++.|.+..+|+||+|||||.
T Consensus 325 ~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI----------~~d~p~~~~~y~qriGR~gR~ 394 (434)
T 2db3_A 325 FPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVI----------NYDMPSKIDDYVHRIGRTGRV 394 (434)
T ss_dssp CCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEE----------ESSCCSSHHHHHHHHTTSSCT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEE----------EECCCCCHHHHHHHhcccccC
Confidence 5689999999999999999999999999999999999999999999999 899999999999999999998
Q ss_pred CCCCceEEEEEeecC
Q 000129 1714 LLDNSGKCVILCHAP 1728 (2114)
Q Consensus 1714 ~~~~~G~~iil~~~~ 1728 (2114)
+..|.|++|+.+.
T Consensus 395 --g~~G~a~~~~~~~ 407 (434)
T 2db3_A 395 --GNNGRATSFFDPE 407 (434)
T ss_dssp --TCCEEEEEEECTT
T ss_pred --CCCCEEEEEEecc
Confidence 6799999999844
No 23
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=3.3e-38 Score=403.41 Aligned_cols=342 Identities=18% Similarity=0.220 Sum_probs=253.9
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA 557 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~ia 557 (2114)
.+++++.+.+ .||..|+|+|.++++.++.+ +.+++++||||||||++|++|+++.+.... .+.++||++
T Consensus 31 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~--------~~~~~lil~ 102 (412)
T 3fht_A 31 RLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN--------KYPQCLCLS 102 (412)
T ss_dssp TCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTS--------CSCCEEEEC
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcC--------CCCCEEEEC
Confidence 4677777776 68999999999999999986 568999999999999999999998875432 245899999
Q ss_pred ccHHHHHHHHHHHHHhhccC-CcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccc
Q 000129 558 PMKALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2114)
Q Consensus 558 P~raLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (2114)
|+++|+.|+++.+.++.... ++.+....|+..........++|+|+||+++..+.+... ...+.++++|||||||++.
T Consensus 103 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~-~~~~~~~~~iViDEah~~~ 181 (412)
T 3fht_A 103 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLK-FIDPKKIKVFVLDEADVMI 181 (412)
T ss_dssp SSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSC-SSCGGGCCEEEEETHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcC-CcChhhCcEEEEeCHHHHh
Confidence 99999999999999876643 688888999887776666678999999999854443322 2456889999999999987
Q ss_pred cC--CchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCc--ccccceeEEEeeccCch
Q 000129 637 DN--RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSY--RPVPLSQQYIGIQVKKP 712 (2114)
Q Consensus 637 d~--rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~--rpv~l~~~~~~~~~~~~ 712 (2114)
+. +...+..+ ........|++++|||+++ .+..+................ .+..+.+.+... ...
T Consensus 182 ~~~~~~~~~~~~-------~~~~~~~~~~i~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 250 (412)
T 3fht_A 182 ATQGHQDQSIRI-------QRMLPRNCQMLLFSATFED--SVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLC--SSR 250 (412)
T ss_dssp STTTTHHHHHHH-------HHTSCTTCEEEEEESCCCH--HHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEEC--SSH
T ss_pred hcCCcHHHHHHH-------HhhCCCCceEEEEEeecCH--HHHHHHHHhcCCCeEEeeccccccccCceEEEEEc--CCh
Confidence 62 22222221 2234668899999999874 333333322222222221111 112223333222 222
Q ss_pred hHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhh
Q 000129 713 LQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDL 792 (2114)
Q Consensus 713 ~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~l 792 (2114)
..+...+. .+......+++||||++++.+..++..|...+
T Consensus 251 ~~~~~~l~-----~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~----------------------------------- 290 (412)
T 3fht_A 251 DEKFQALC-----NLYGAITIAQAMIFCHTRKTASWLAAELSKEG----------------------------------- 290 (412)
T ss_dssp HHHHHHHH-----HHHHHHSSSEEEEECSSHHHHHHHHHHHHHTT-----------------------------------
T ss_pred HHHHHHHH-----HHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCC-----------------------------------
Confidence 22222222 22333457899999999999999999887642
Q ss_pred ccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccC
Q 000129 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (2114)
Q Consensus 793 l~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAG 872 (2114)
.++.++||+|+..+|..+++.|++|.++|||||+++++|||+|++++||+++.|.++. .+.|..+|+||+||||
T Consensus 291 --~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~----~~~s~~~~~Qr~GR~g 364 (412)
T 3fht_A 291 --HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKD----GNPDNETYLHRIGRTG 364 (412)
T ss_dssp --CCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSS----SSBCHHHHHHHHTTSS
T ss_pred --CeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCC----CCcchheeecccCccc
Confidence 3478899999999999999999999999999999999999999999999955444432 3458999999999999
Q ss_pred CCCCCCceEEEEEcCCCc
Q 000129 873 RPQYDSYGEGIIITGHSE 890 (2114)
Q Consensus 873 R~g~d~~G~~iil~~~~e 890 (2114)
|.| ..|.|+++++..+
T Consensus 365 R~g--~~g~~~~~~~~~~ 380 (412)
T 3fht_A 365 RFG--KRGLAVNMVDSKH 380 (412)
T ss_dssp CTT--CCEEEEEEECSHH
T ss_pred CCC--CCceEEEEEcChh
Confidence 987 6799999998765
No 24
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.5e-38 Score=407.42 Aligned_cols=351 Identities=19% Similarity=0.270 Sum_probs=254.5
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCC--------CCC--CCC
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRND--------DGS--FNH 548 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~--------~g~--~~~ 548 (2114)
.|++++...+ .||.+|+|+|.++++.++.+ ++++++||||||||++|++|+++.+...... .+. ...
T Consensus 21 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~-~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (417)
T 2i4i_A 21 EMGEIIMGNIELTRYTRPTPVQKHAIPIIKEK-RDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRK 99 (417)
T ss_dssp CCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHccC-CCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccccccccccc
Confidence 4678888877 68999999999999988765 5699999999999999999999988654211 000 011
Q ss_pred CCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHHHHHHhccCCCccccccc
Q 000129 549 SNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVK 625 (2114)
Q Consensus 549 ~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~ 625 (2114)
..+++||++|+++|+.|+++.+.++....++++..++|+.....+. ..+++|+|+||+++..+.+... ..+..++
T Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~--~~~~~~~ 177 (417)
T 2i4i_A 100 QYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK--IGLDFCK 177 (417)
T ss_dssp BCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTS--BCCTTCC
T ss_pred CCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCC--cChhhCc
Confidence 2357999999999999999999998888889999999987655432 3468999999999844443322 4577899
Q ss_pred EEEEeccccccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCC--ccccccee
Q 000129 626 LLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNS--YRPVPLSQ 702 (2114)
Q Consensus 626 liIiDEaH~l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~--~rpv~l~~ 702 (2114)
+|||||||++.+ .+++.+..++.... .......+++++|||+|+ .+..++........+..... ..+..+.+
T Consensus 178 ~iViDEah~~~~~~~~~~~~~i~~~~~---~~~~~~~~~i~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 252 (417)
T 2i4i_A 178 YLVLDEADRMLDMGFEPQIRRIVEQDT---MPPKGVRHTMMFSATFPK--EIQMLARDFLDEYIFLAVGRVGSTSENITQ 252 (417)
T ss_dssp EEEESSHHHHHHTTCHHHHHHHHTSSS---CCCBTTBEEEEEESCCCH--HHHHHHHHHCSSCEEEEEC----CCSSEEE
T ss_pred EEEEEChhHhhccCcHHHHHHHHHhcc---CCCcCCcEEEEEEEeCCH--HHHHHHHHHcCCCEEEEeCCCCCCccCceE
Confidence 999999999876 46666655543210 011236789999999874 33333322222222222111 11223333
Q ss_pred EEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhc
Q 000129 703 QYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTD 782 (2114)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~ 782 (2114)
.++..... .+.. .+.+.+.....++++||||++++.+..++..|...+
T Consensus 253 ~~~~~~~~---~~~~----~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~------------------------- 300 (417)
T 2i4i_A 253 KVVWVEES---DKRS----FLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG------------------------- 300 (417)
T ss_dssp EEEECCGG---GHHH----HHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTT-------------------------
T ss_pred EEEEeccH---hHHH----HHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCC-------------------------
Confidence 33333222 1222 222223222346799999999999999999887632
Q ss_pred ccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHH
Q 000129 783 MVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPL 862 (2114)
Q Consensus 783 ~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~ 862 (2114)
..+..+||+|+..+|..+++.|++|.++|||||+++++|+|+|++++||+ |+++. |..
T Consensus 301 ------------~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~----~~~p~------s~~ 358 (417)
T 2i4i_A 301 ------------YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVIN----FDLPS------DIE 358 (417)
T ss_dssp ------------CCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEE----SSCCS------SHH
T ss_pred ------------CCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEE----EcCCC------CHH
Confidence 34778899999999999999999999999999999999999999999998 77664 889
Q ss_pred HHHHhhcccCCCCCCCceEEEEEcCCCcHHHHH
Q 000129 863 DIMQMLGRAGRPQYDSYGEGIIITGHSELRYYL 895 (2114)
Q Consensus 863 ~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~ 895 (2114)
+|+||+|||||.| ..|.|+++++..+...+.
T Consensus 359 ~~~Qr~GR~gR~g--~~g~~~~~~~~~~~~~~~ 389 (417)
T 2i4i_A 359 EYVHRIGRTGRVG--NLGLATSFFNERNINITK 389 (417)
T ss_dssp HHHHHHTTBCC----CCEEEEEEECGGGGGGHH
T ss_pred HHHHhcCccccCC--CCceEEEEEccccHHHHH
Confidence 9999999999987 679999999887754443
No 25
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=6.1e-38 Score=400.97 Aligned_cols=363 Identities=16% Similarity=0.230 Sum_probs=267.4
Q ss_pred CCCCCccCCCCCCcccccChhHHHHHhc-CCCCCCHHHHHHHHHHHcC-CCcEEEEecCCCchHHHHHHHHHHHhhhccC
Q 000129 1310 YPPPTELLDLQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNT-DDNVLVAAPTGSGKTICSEFAILRNHQKASE 1387 (2114)
Q Consensus 1310 ~~~~t~lldl~p~~~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~-~~nvli~ApTGSGKTl~~~l~il~~l~~~~~ 1387 (2114)
..++++++++.++.-..+.....+.++. ||..|+|+|.++++.++.+ +.+++++||||||||++|++|+++.+.....
T Consensus 15 ~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~ 94 (412)
T 3fht_A 15 RDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANK 94 (412)
T ss_dssp TCTTSTTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSC
T ss_pred ccCCCCccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCC
Confidence 3456667777888777888888888876 7999999999999999986 5779999999999999999999998876433
Q ss_pred CCceEEEEEcccHHHHHHHHHHHHHHhcCC-CCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhccccccccee
Q 000129 1388 TGVMRAVYIAPLEALAKERYRDWEIKFGQG-LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVS 1466 (2114)
Q Consensus 1388 ~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~-~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~ 1466 (2114)
.+ ++||++|+++|+.|+++.+++ +... .+..+....|+...........+|+|+||+++..++++. ....+.+++
T Consensus 95 ~~--~~lil~P~~~L~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~-~~~~~~~~~ 170 (412)
T 3fht_A 95 YP--QCLCLSPTYELALQTGKVIEQ-MGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL-KFIDPKKIK 170 (412)
T ss_dssp SC--CEEEECSSHHHHHHHHHHHHH-HTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTS-CSSCGGGCC
T ss_pred CC--CEEEECCCHHHHHHHHHHHHH-HHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhc-CCcChhhCc
Confidence 33 899999999999999999984 5443 467888888877665444556799999999998877552 233568999
Q ss_pred EEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCChh-HHHHHhcCCCCceeecCCCC-CccCcEEEE
Q 000129 1467 LFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAK-DLGEWIGATSHGLFNFPPGV-RPVPLEIHI 1544 (2114)
Q Consensus 1467 liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~-dla~wl~~~~~~~~~f~~~~-rpv~l~~~~ 1544 (2114)
+||+||||++.+..+ ....+..+...++.+.|++++|||+++.. .+........ ..+...... ....+....
T Consensus 171 ~iViDEah~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 244 (412)
T 3fht_A 171 VFVLDEADVMIATQG-----HQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDP-NVIKLKREEETLDTIKQYY 244 (412)
T ss_dssp EEEEETHHHHHSTTT-----THHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSC-EEECCCGGGSSCTTEEEEE
T ss_pred EEEEeCHHHHhhcCC-----cHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCC-eEEeeccccccccCceEEE
Confidence 999999998876332 22233334445577899999999997642 3333332222 122221111 111222222
Q ss_pred ecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhh
Q 000129 1545 QGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQ 1624 (2114)
Q Consensus 1545 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~ 1624 (2114)
.... ...... .....+... ...+++||||++++.|..++..|..
T Consensus 245 ~~~~--~~~~~~-----~~l~~~~~~-~~~~~~lvf~~~~~~~~~l~~~L~~---------------------------- 288 (412)
T 3fht_A 245 VLCS--SRDEKF-----QALCNLYGA-ITIAQAMIFCHTRKTASWLAAELSK---------------------------- 288 (412)
T ss_dssp EECS--SHHHHH-----HHHHHHHHH-HSSSEEEEECSSHHHHHHHHHHHHH----------------------------
T ss_pred EEcC--ChHHHH-----HHHHHHHhh-cCCCCEEEEeCCHHHHHHHHHHHHh----------------------------
Confidence 1111 111111 111222222 3567899999999999999877632
Q ss_pred HHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCC------C
Q 000129 1625 EEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTD------Y 1698 (2114)
Q Consensus 1625 d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~------~ 1698 (2114)
.+.++.++||+|+..+|..+++.|++|+++|||||+++++|+|+|++.+|| +++.| .
T Consensus 289 -------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi----------~~~~p~~~~~~~ 351 (412)
T 3fht_A 289 -------EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVI----------NFDLPVDKDGNP 351 (412)
T ss_dssp -------TTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEE----------ESSCCBCSSSSB
T ss_pred -------CCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEE----------EECCCCCCCCCc
Confidence 245689999999999999999999999999999999999999999999999 66666 5
Q ss_pred CHhHHHHhHcccCCCCCCCceEEEEEeecCc-HHHHHHHH
Q 000129 1699 PVTDLLQMMGHASRPLLDNSGKCVILCHAPR-KEYYKKFL 1737 (2114)
Q Consensus 1699 s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~-~~~~~~~l 1737 (2114)
+..+|+||+|||||. +..|.|++++...+ ..+++.+.
T Consensus 352 s~~~~~Qr~GR~gR~--g~~g~~~~~~~~~~~~~~~~~i~ 389 (412)
T 3fht_A 352 DNETYLHRIGRTGRF--GKRGLAVNMVDSKHSMNILNRIQ 389 (412)
T ss_dssp CHHHHHHHHTTSSCT--TCCEEEEEEECSHHHHHHHHHHH
T ss_pred chheeecccCcccCC--CCCceEEEEEcChhhHHHHHHHH
Confidence 789999999999997 68899999998765 44444444
No 26
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=4.4e-38 Score=402.24 Aligned_cols=340 Identities=18% Similarity=0.295 Sum_probs=256.0
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
.|++.+...+ .||.+|+|+|.++++.++.+ .+++++||||||||++|++|+++.+.... .+.++||++|
T Consensus 43 ~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~-~~~lv~a~TGsGKT~~~~~~~~~~l~~~~--------~~~~~lil~P 113 (410)
T 2j0s_A 43 GLREDLLRGIYAYGFEKPSAIQQRAIKQIIKG-RDVIAQSQSGTGKTATFSISVLQCLDIQV--------RETQALILAP 113 (410)
T ss_dssp CCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHTCCTTS--------CSCCEEEECS
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCC-CCEEEECCCCCCchHHHHHHHHHHHhhcc--------CCceEEEEcC
Confidence 4677777776 68999999999999998876 45999999999999999999998764321 2458999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccc
Q 000129 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l 635 (2114)
+++|+.|+++.+.++....++++..++|+....... ...++|+|+||+++..+.+... ..+..+++||+||||++
T Consensus 114 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~--~~~~~~~~vViDEah~~ 191 (410)
T 2j0s_A 114 TRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRS--LRTRAIKMLVLDEADEM 191 (410)
T ss_dssp SHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTS--SCCTTCCEEEEETHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCC--ccHhheeEEEEccHHHH
Confidence 999999999999998888899999999987765432 2467999999999844433322 45678999999999998
Q ss_pred cc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecC--CcccccceeEEEeeccCch
Q 000129 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDN--SYRPVPLSQQYIGIQVKKP 712 (2114)
Q Consensus 636 ~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~--~~rpv~l~~~~~~~~~~~~ 712 (2114)
.+ .+...+..++ ...+...|++++|||+|+ .+..++......+...... ...+..+.+.+......
T Consensus 192 ~~~~~~~~~~~i~-------~~~~~~~~~i~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 260 (410)
T 2j0s_A 192 LNKGFKEQIYDVY-------RYLPPATQVVLISATLPH--EILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVERE-- 260 (410)
T ss_dssp TSTTTHHHHHHHH-------TTSCTTCEEEEEESCCCH--HHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESST--
T ss_pred HhhhhHHHHHHHH-------HhCccCceEEEEEcCCCH--HHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcH--
Confidence 76 3444333322 334568899999999874 4444444333333322211 11222333344333222
Q ss_pred hHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhh
Q 000129 713 LQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDL 792 (2114)
Q Consensus 713 ~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~l 792 (2114)
..+...+.+ +......+++||||++++.+..++..|...+
T Consensus 261 ~~k~~~l~~-----~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~----------------------------------- 300 (410)
T 2j0s_A 261 EWKFDTLCD-----LYDTLTITQAVIFCNTKRKVDWLTEKMREAN----------------------------------- 300 (410)
T ss_dssp THHHHHHHH-----HHHHHTSSEEEEECSSHHHHHHHHHHHHHTT-----------------------------------
T ss_pred HhHHHHHHH-----HHHhcCCCcEEEEEcCHHHHHHHHHHHHhCC-----------------------------------
Confidence 122222222 2233446799999999999999999887642
Q ss_pred ccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccC
Q 000129 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (2114)
Q Consensus 793 l~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAG 872 (2114)
.++..+||+|+..+|..+++.|++|.++|||||+++++|+|+|++++||+ |+++. +..+|+||+||||
T Consensus 301 --~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~----~~~p~------s~~~~~Qr~GR~g 368 (410)
T 2j0s_A 301 --FTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIIN----YDLPN------NRELYIHRIGRSG 368 (410)
T ss_dssp --CCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEE----SSCCS------SHHHHHHHHTTSS
T ss_pred --CceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEE----ECCCC------CHHHHHHhccccc
Confidence 34678899999999999999999999999999999999999999999998 77664 7889999999999
Q ss_pred CCCCCCceEEEEEcCCCcHHHHHH
Q 000129 873 RPQYDSYGEGIIITGHSELRYYLS 896 (2114)
Q Consensus 873 R~g~d~~G~~iil~~~~e~~~~~~ 896 (2114)
|.| ..|.++++++..+...+..
T Consensus 369 R~g--~~g~~~~~~~~~~~~~~~~ 390 (410)
T 2j0s_A 369 RYG--RKGVAINFVKNDDIRILRD 390 (410)
T ss_dssp GGG--CCEEEEEEEEGGGHHHHHH
T ss_pred CCC--CceEEEEEecHHHHHHHHH
Confidence 987 6799999999888665544
No 27
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.3e-37 Score=395.36 Aligned_cols=346 Identities=19% Similarity=0.297 Sum_probs=252.6
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCC-CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSA-DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~-~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
|++.+.+.+ .||.+|+|+|.++++.++.++ .+++++||||||||++|+++++..+.... .+.++||++|
T Consensus 12 l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~--------~~~~~lil~P 83 (395)
T 3pey_A 12 LAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPED--------ASPQAICLAP 83 (395)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTC--------CSCCEEEECS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCC--------CCccEEEECC
Confidence 567777766 689999999999999998873 67999999999999999999998875431 2458999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccC
Q 000129 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDN 638 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~ 638 (2114)
+++|+.|+++.+.++....++.+...+|+.... .....++|+|+||+++..+.+.. ...+.++++||+||||++.+.
T Consensus 84 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iiv~T~~~l~~~~~~~--~~~~~~~~~iIiDEah~~~~~ 160 (395)
T 3pey_A 84 SRELARQTLEVVQEMGKFTKITSQLIVPDSFEK-NKQINAQVIVGTPGTVLDLMRRK--LMQLQKIKIFVLDEADNMLDQ 160 (395)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCT-TSCBCCSEEEECHHHHHHHHHTT--CBCCTTCCEEEEETHHHHHHS
T ss_pred CHHHHHHHHHHHHHHhcccCeeEEEEecCchhh-hccCCCCEEEEcHHHHHHHHHcC--CcccccCCEEEEEChhhhcCc
Confidence 999999999999998877788888888875433 23457899999999974444332 245778999999999998763
Q ss_pred CchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEe-ec-CCcccccceeEEEeeccCchhHHH
Q 000129 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFY-FD-NSYRPVPLSQQYIGIQVKKPLQRF 716 (2114)
Q Consensus 639 rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~-f~-~~~rpv~l~~~~~~~~~~~~~~~~ 716 (2114)
.+ +...+.++ ....+...|++++|||+++ .+..+........... .. ....+..+.+.+... .....+.
T Consensus 161 ~~--~~~~~~~~---~~~~~~~~~~i~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 231 (395)
T 3pey_A 161 QG--LGDQCIRV---KRFLPKDTQLVLFSATFAD--AVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDC--KNEADKF 231 (395)
T ss_dssp TT--HHHHHHHH---HHTSCTTCEEEEEESCCCH--HHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEEC--SSHHHHH
T ss_pred cc--cHHHHHHH---HHhCCCCcEEEEEEecCCH--HHHHHHHHhCCCCeEEEccccccccccccEEEEEc--CchHHHH
Confidence 32 22222222 2334667899999999875 2333332221111111 11 111122222222222 2222222
Q ss_pred HHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCc
Q 000129 717 QLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYG 796 (2114)
Q Consensus 717 ~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~g 796 (2114)
..+ ..+......+++||||++++.+..++..|...+ ..
T Consensus 232 ~~l-----~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~-------------------------------------~~ 269 (395)
T 3pey_A 232 DVL-----TELYGLMTIGSSIIFVATKKTANVLYGKLKSEG-------------------------------------HE 269 (395)
T ss_dssp HHH-----HHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTT-------------------------------------CC
T ss_pred HHH-----HHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcC-------------------------------------Cc
Confidence 221 122333446899999999999999999887642 34
Q ss_pred eEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCC
Q 000129 797 FAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY 876 (2114)
Q Consensus 797 v~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~ 876 (2114)
+..+||+|+..+|..+++.|++|.++|||||+++++|+|+|++++||+ |+++.......|..+|+||+|||||.|
T Consensus 270 ~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~----~~~p~~~~~~~s~~~~~Qr~GR~gR~g- 344 (395)
T 3pey_A 270 VSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVN----YDLPTLANGQADPATYIHRIGRTGRFG- 344 (395)
T ss_dssp CEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEE----SSCCBCTTSSBCHHHHHHHHTTSSCTT-
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEE----cCCCCCCcCCCCHHHhhHhccccccCC-
Confidence 778899999999999999999999999999999999999999999999 665544445679999999999999987
Q ss_pred CCceEEEEEcCCCcHHHHH
Q 000129 877 DSYGEGIIITGHSELRYYL 895 (2114)
Q Consensus 877 d~~G~~iil~~~~e~~~~~ 895 (2114)
..|.+++++...+...+.
T Consensus 345 -~~g~~~~~~~~~~~~~~~ 362 (395)
T 3pey_A 345 -RKGVAISFVHDKNSFNIL 362 (395)
T ss_dssp -CCEEEEEEECSHHHHHHH
T ss_pred -CCceEEEEEechHHHHHH
Confidence 679999999876544433
No 28
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=2.6e-37 Score=392.51 Aligned_cols=357 Identities=17% Similarity=0.260 Sum_probs=260.6
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHHcCC-CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHH
Q 000129 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTD-DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403 (2114)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~-~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La 1403 (2114)
.|.....+.++. ||..|+|+|.++++.+++++ .+++++||||||||++|.++++..+.....++ ++||++|+++|+
T Consensus 11 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~--~~lil~P~~~L~ 88 (395)
T 3pey_A 11 GLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASP--QAICLAPSRELA 88 (395)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSC--CEEEECSSHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCc--cEEEECCCHHHH
Confidence 355566777766 79999999999999999863 77999999999999999999999887633333 899999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCch
Q 000129 1404 KERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483 (2114)
Q Consensus 1404 ~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~ 1483 (2114)
.|+++.++ .++...++.+...+|+..... ....++|+|+||+++..++++ ....+.++++||+||||.+.+..+
T Consensus 89 ~q~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~T~~~l~~~~~~--~~~~~~~~~~iIiDEah~~~~~~~-- 162 (395)
T 3pey_A 89 RQTLEVVQ-EMGKFTKITSQLIVPDSFEKN-KQINAQVIVGTPGTVLDLMRR--KLMQLQKIKIFVLDEADNMLDQQG-- 162 (395)
T ss_dssp HHHHHHHH-HHTTTSCCCEEEESTTSSCTT-SCBCCSEEEECHHHHHHHHHT--TCBCCTTCCEEEEETHHHHHHSTT--
T ss_pred HHHHHHHH-HHhcccCeeEEEEecCchhhh-ccCCCCEEEEcHHHHHHHHHc--CCcccccCCEEEEEChhhhcCccc--
Confidence 99999998 566666788888887654332 234679999999999887765 234588899999999998876432
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHH
Q 000129 1484 LEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKP 1562 (2114)
Q Consensus 1484 le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~ 1562 (2114)
+...+..+....+.+.+++++|||+++. ..+..++......+...........+........ ...... .
T Consensus 163 ---~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~ 232 (395)
T 3pey_A 163 ---LGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCK--NEADKF-----D 232 (395)
T ss_dssp ---HHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECS--SHHHHH-----H
T ss_pred ---cHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcC--chHHHH-----H
Confidence 3333444445567789999999999864 4555554433322221111122222222222111 111111 1
Q ss_pred HHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCC
Q 000129 1563 TFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEG 1642 (2114)
Q Consensus 1563 ~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ 1642 (2114)
....+... ...+++||||++++.|..++..|.. .+..+..+||+
T Consensus 233 ~l~~~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~-----------------------------------~~~~~~~~~~~ 276 (395)
T 3pey_A 233 VLTELYGL-MTIGSSIIFVATKKTANVLYGKLKS-----------------------------------EGHEVSILHGD 276 (395)
T ss_dssp HHHHHHTT-TTSSEEEEECSCHHHHHHHHHHHHH-----------------------------------TTCCCEEECTT
T ss_pred HHHHHHHh-ccCCCEEEEeCCHHHHHHHHHHHHh-----------------------------------cCCcEEEeCCC
Confidence 11222222 3567899999999999998876632 23468999999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCC------CHhHHHHhHcccCCCCCC
Q 000129 1643 LNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDY------PVTDLLQMMGHASRPLLD 1716 (2114)
Q Consensus 1643 ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~------s~~~~lQr~GRAGR~~~~ 1716 (2114)
|+..+|..+++.|++|+++|||||+++++|+|+|++.+|| +++.|. +..+|+||+|||||. +
T Consensus 277 ~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi----------~~~~p~~~~~~~s~~~~~Qr~GR~gR~--g 344 (395)
T 3pey_A 277 LQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVV----------NYDLPTLANGQADPATYIHRIGRTGRF--G 344 (395)
T ss_dssp SCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEE----------ESSCCBCTTSSBCHHHHHHHHTTSSCT--T
T ss_pred CCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEE----------EcCCCCCCcCCCCHHHhhHhccccccC--C
Confidence 9999999999999999999999999999999999999999 666665 999999999999997 5
Q ss_pred CceEEEEEeecCcHH-HHHHHHHhccCCCCccc
Q 000129 1717 NSGKCVILCHAPRKE-YYKKFLRLTQNPNYYNL 1748 (2114)
Q Consensus 1717 ~~G~~iil~~~~~~~-~~~~~lRl~~nP~~y~l 1748 (2114)
..|.|++++...+.. +++.+.+...++....+
T Consensus 345 ~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 377 (395)
T 3pey_A 345 RKGVAISFVHDKNSFNILSAIQKYFGDIEMTRV 377 (395)
T ss_dssp CCEEEEEEECSHHHHHHHHHHHHHTTSCCCEEC
T ss_pred CCceEEEEEechHHHHHHHHHHHHhCCceeecC
Confidence 789999999876544 44444454444544433
No 29
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2.1e-37 Score=396.04 Aligned_cols=348 Identities=14% Similarity=0.244 Sum_probs=260.1
Q ss_pred ccccChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHH
Q 000129 1324 VTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEAL 1402 (2114)
Q Consensus 1324 ~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~L 1402 (2114)
-..|.....+.+.. ||..|+|+|.++++.+++++ +++++||||||||++|++|+++.+.....+. ++||++|+++|
T Consensus 41 ~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~-~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~--~~lil~Pt~~L 117 (410)
T 2j0s_A 41 TMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGR-DVIAQSQSGTGKTATFSISVLQCLDIQVRET--QALILAPTREL 117 (410)
T ss_dssp GGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTC-CEEEECCTTSSHHHHHHHHHHHTCCTTSCSC--CEEEECSSHHH
T ss_pred hcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCC-CEEEECCCCCCchHHHHHHHHHHHhhccCCc--eEEEEcCcHHH
Confidence 34466666777765 79999999999999999854 5999999999999999999998876432333 89999999999
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEcCCcccch--h-hccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCC
Q 000129 1403 AKERYRDWEIKFGQGLGMRVVELTGETAMDL--K-LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479 (2114)
Q Consensus 1403 a~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~--~-~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~ 1479 (2114)
+.|+++.++ .++...++++..++|+..... . ....++|+|+||+++..++++. ...+.++++||+||||.+.+.
T Consensus 118 ~~q~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~--~~~~~~~~~vViDEah~~~~~ 194 (410)
T 2j0s_A 118 AVQIQKGLL-ALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR--SLRTRAIKMLVLDEADEMLNK 194 (410)
T ss_dssp HHHHHHHHH-HHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTT--SSCCTTCCEEEEETHHHHTST
T ss_pred HHHHHHHHH-HHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhC--CccHhheeEEEEccHHHHHhh
Confidence 999999998 577667889999998876542 2 2245699999999998887763 345788999999999998765
Q ss_pred CCchHHHHHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhcC---CCCceeecCCCCCccCcEEEEecccccchHHHH
Q 000129 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGA---TSHGLFNFPPGVRPVPLEIHIQGVDITNFEARM 1556 (2114)
Q Consensus 1480 ~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~---~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~ 1556 (2114)
. +...+..+...++...+++++|||+++. +.+++.. .+..+........+..+...+........ ..
T Consensus 195 ~------~~~~~~~i~~~~~~~~~~i~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--k~ 264 (410)
T 2j0s_A 195 G------FKEQIYDVYRYLPPATQVVLISATLPHE--ILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEW--KF 264 (410)
T ss_dssp T------THHHHHHHHTTSCTTCEEEEEESCCCHH--HHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTH--HH
T ss_pred h------hHHHHHHHHHhCccCceEEEEEcCCCHH--HHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHh--HH
Confidence 4 2334444555567789999999999753 2222221 11111111111111222222222211111 11
Q ss_pred HhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccce
Q 000129 1557 QAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGV 1636 (2114)
Q Consensus 1557 ~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV 1636 (2114)
..+..+... ...+++||||++++.|..++..|.. .+.++
T Consensus 265 -----~~l~~~~~~-~~~~~~lVf~~~~~~~~~l~~~L~~-----------------------------------~~~~~ 303 (410)
T 2j0s_A 265 -----DTLCDLYDT-LTITQAVIFCNTKRKVDWLTEKMRE-----------------------------------ANFTV 303 (410)
T ss_dssp -----HHHHHHHHH-HTSSEEEEECSSHHHHHHHHHHHHH-----------------------------------TTCCC
T ss_pred -----HHHHHHHHh-cCCCcEEEEEcCHHHHHHHHHHHHh-----------------------------------CCCce
Confidence 112222233 3456899999999999988876632 24568
Q ss_pred EeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCC
Q 000129 1637 GYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLD 1716 (2114)
Q Consensus 1637 ~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~ 1716 (2114)
..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++.+|| +++.|.+..+|+||+|||||. +
T Consensus 304 ~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi----------~~~~p~s~~~~~Qr~GR~gR~--g 371 (410)
T 2j0s_A 304 SSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII----------NYDLPNNRELYIHRIGRSGRY--G 371 (410)
T ss_dssp EEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEE----------ESSCCSSHHHHHHHHTTSSGG--G
T ss_pred EEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEE----------EECCCCCHHHHHHhcccccCC--C
Confidence 9999999999999999999999999999999999999999999999 788999999999999999998 5
Q ss_pred CceEEEEEeecCcHHHHHHHHHhc
Q 000129 1717 NSGKCVILCHAPRKEYYKKFLRLT 1740 (2114)
Q Consensus 1717 ~~G~~iil~~~~~~~~~~~~lRl~ 1740 (2114)
..|.|++++.+.+...++.+.+..
T Consensus 372 ~~g~~~~~~~~~~~~~~~~i~~~~ 395 (410)
T 2j0s_A 372 RKGVAINFVKNDDIRILRDIEQYY 395 (410)
T ss_dssp CCEEEEEEEEGGGHHHHHHHHHHT
T ss_pred CceEEEEEecHHHHHHHHHHHHHh
Confidence 899999999999888877776543
No 30
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=7.9e-38 Score=433.47 Aligned_cols=365 Identities=26% Similarity=0.437 Sum_probs=280.1
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.|+|+|.++++.++++ ++++++||||||||++|++++...+.. ++ +++|++|+++|+.|+++++++.|+ ++
T Consensus 39 ~l~~~Q~~aI~~il~g-~~vlv~apTGsGKTlv~~~~i~~~~~~---g~--~vlvl~PtraLa~Q~~~~l~~~~~---~~ 109 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQG-DSVFVAAHTSAGKTVVAEYAIAMAHRN---MT--KTIYTSPIKALSNQKFRDFKETFD---DV 109 (997)
T ss_dssp CCCHHHHHHHHHHHTT-CEEEEECCTTSCSHHHHHHHHHHHHHT---TC--EEEEEESCGGGHHHHHHHHHTTC-----C
T ss_pred CCCHHHHHHHHHHHcC-CCEEEEECCCCcHHHHHHHHHHHHHhc---CC--eEEEEeCCHHHHHHHHHHHHHHcC---CC
Confidence 4899999999999875 569999999999999999999887654 44 999999999999999999986553 67
Q ss_pred EEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCC-CCchHHHHHHHHHHHHhhcC
Q 000129 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGPVLEVIVSRMRYIASQVE 1499 (2114)
Q Consensus 1421 ~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~-~g~~le~i~srl~~i~~~~~ 1499 (2114)
+++.++|+...+ ..++|+|+||+++..++.+ ....+.++++|||||||++.++ +|..++.++.. ++
T Consensus 110 ~v~~l~G~~~~~----~~~~IlV~Tpe~L~~~l~~--~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~-------l~ 176 (997)
T 4a4z_A 110 NIGLITGDVQIN----PDANCLIMTTEILRSMLYR--GADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIM-------LP 176 (997)
T ss_dssp CEEEECSSCEEC----TTSSEEEEEHHHHHHHHHH--TCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHH-------SC
T ss_pred eEEEEeCCCccC----CCCCEEEECHHHHHHHHHh--CchhhcCCCEEEEECcccccccchHHHHHHHHHh-------cc
Confidence 899999987654 4579999999999877765 3446889999999999999875 68888876643 36
Q ss_pred CCceEEEEcccCCChhHHHHHhcCCC-CceeecCCCCCccCcEEEEeccccc-------------chHHHH---------
Q 000129 1500 NKIRIVALSTSLANAKDLGEWIGATS-HGLFNFPPGVRPVPLEIHIQGVDIT-------------NFEARM--------- 1556 (2114)
Q Consensus 1500 ~~~riV~lSATl~n~~dla~wl~~~~-~~~~~f~~~~rpv~l~~~~~~~~~~-------------~~~~~~--------- 1556 (2114)
.+.++|+||||++|+.++++|++... ..++.+....||+|+..++...... .+....
T Consensus 177 ~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 256 (997)
T 4a4z_A 177 QHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAK 256 (997)
T ss_dssp TTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-----
T ss_pred cCCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccc
Confidence 78999999999999999999998643 5677788889999998776421100 000000
Q ss_pred ------------------------------------------------------------HhcCHHHHHHHHHHh--cCC
Q 000129 1557 ------------------------------------------------------------QAMTKPTFTAIVQHA--KNE 1574 (2114)
Q Consensus 1557 ------------------------------------------------------------~~~~~~~~~~i~~~l--~~~ 1574 (2114)
....+..+..+...+ ...
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~ 336 (997)
T 4a4z_A 257 GAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKREL 336 (997)
T ss_dssp ------------------------------------------------------------CCCCTTHHHHHHHHHHHTTC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCC
Confidence 001122233343333 244
Q ss_pred CCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhh----Hhh--------hhHHHHHHHhccceEeecCC
Q 000129 1575 KPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPF----IDN--------IQEEMLKATLRHGVGYLHEG 1642 (2114)
Q Consensus 1575 ~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~----~~~--------i~d~~L~~~l~~gV~~~H~~ 1642 (2114)
.++||||+|++.|+.++..|.......... ...+..+ ... .....+...+..||++|||+
T Consensus 337 ~~~IVF~~sr~~~e~la~~L~~~~~~~~~e--------~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~g 408 (997)
T 4a4z_A 337 LPMVVFVFSKKRCEEYADWLEGINFCNNKE--------KSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGG 408 (997)
T ss_dssp CSEEEECSCHHHHHHHHHTTTTCCCCCHHH--------HHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTT
T ss_pred CCEEEEECCHHHHHHHHHHHhcCCCCCHHH--------HHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCC
Confidence 699999999999999997774311100000 0011111 111 12245677888999999999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEE
Q 000129 1643 LNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCV 1722 (2114)
Q Consensus 1643 ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~i 1722 (2114)
|++.+|..+++.|++|.++|||||+++++|||+|++.+|+.+...||+. .+.|.+..+|+||+|||||.|.+..|.|+
T Consensus 409 l~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi~~~~k~dg~--~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi 486 (997)
T 4a4z_A 409 LLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGN--GLRELTPGEFTQMAGRAGRRGLDSTGTVI 486 (997)
T ss_dssp SCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEEEESCSEEEETT--EEEECCHHHHHHHHGGGCCTTTCSSEEEE
T ss_pred CCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCceEEEeccccccCc--cCCCCCHHHHhHHhcccccCCCCcceEEE
Confidence 9999999999999999999999999999999999999999999999987 45689999999999999999888999999
Q ss_pred EEee--cCcHHHHHHHH
Q 000129 1723 ILCH--APRKEYYKKFL 1737 (2114)
Q Consensus 1723 il~~--~~~~~~~~~~l 1737 (2114)
+++. ..+...+++++
T Consensus 487 ~l~~~~~~~~~~~~~~i 503 (997)
T 4a4z_A 487 VMAYNSPLSIATFKEVT 503 (997)
T ss_dssp EECCSSCCCHHHHHHHH
T ss_pred EecCCCcchHHHHHHHh
Confidence 9994 33556666665
No 31
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=2.4e-37 Score=394.08 Aligned_cols=338 Identities=21% Similarity=0.302 Sum_probs=254.5
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
|++.+.+.+ .||.+|+|+|.++++.++.+. +++++||||||||++|+++++..+.... .+.+++|++|+
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~-~~li~a~TGsGKT~~~~~~~~~~~~~~~--------~~~~~lil~P~ 98 (400)
T 1s2m_A 28 LKRELLMGIFEAGFEKPSPIQEEAIPVAITGR-DILARAKNGTGKTAAFVIPTLEKVKPKL--------NKIQALIMVPT 98 (400)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTC-CEEEECCTTSCHHHHHHHHHHHHCCTTS--------CSCCEEEECSS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCC-CEEEECCCCcHHHHHHHHHHHHHHhhcc--------CCccEEEEcCC
Confidence 566666666 699999999999999988774 5999999999999999999998875421 24589999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccccc
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l 635 (2114)
++|+.|+++.+.+++...++++..++|+....... ...++|+|+||+++ +.+.+.. ..+.++++||+||||++
T Consensus 99 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~---~~~~~~~~vIiDEaH~~ 175 (400)
T 1s2m_A 99 RELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKV---ADLSDCSLFIMDEADKM 175 (400)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC---SCCTTCCEEEEESHHHH
T ss_pred HHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCC---cccccCCEEEEeCchHh
Confidence 99999999999998888899999999987654432 35789999999998 4444332 45678999999999988
Q ss_pred cc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEe-ecCCcccccceeEEEeeccCchh
Q 000129 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFY-FDNSYRPVPLSQQYIGIQVKKPL 713 (2114)
Q Consensus 636 ~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~-f~~~~rpv~l~~~~~~~~~~~~~ 713 (2114)
.+ .++..++.++ ...+...+++++|||+| ..+..++......+... .........+.+.+......
T Consensus 176 ~~~~~~~~~~~i~-------~~~~~~~~~i~lSAT~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 243 (400)
T 1s2m_A 176 LSRDFKTIIEQIL-------SFLPPTHQSLLFSATFP--LTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEER--- 243 (400)
T ss_dssp SSHHHHHHHHHHH-------TTSCSSCEEEEEESCCC--HHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECCGG---
T ss_pred hhhchHHHHHHHH-------HhCCcCceEEEEEecCC--HHHHHHHHHHcCCCeEEEeccccccCCceeEEEEechh---
Confidence 75 3333333222 23456789999999987 34555554332222211 11222222233333222221
Q ss_pred HHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhc
Q 000129 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (2114)
Q Consensus 714 ~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll 793 (2114)
.+...+. .+......+++||||++++.+..++..|...+
T Consensus 244 ~k~~~l~-----~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~------------------------------------ 282 (400)
T 1s2m_A 244 QKLHCLN-----TLFSKLQINQAIIFCNSTNRVELLAKKITDLG------------------------------------ 282 (400)
T ss_dssp GHHHHHH-----HHHHHSCCSEEEEECSSHHHHHHHHHHHHHHT------------------------------------
T ss_pred hHHHHHH-----HHHhhcCCCcEEEEEecHHHHHHHHHHHHhcC------------------------------------
Confidence 2222222 23334457899999999999999999887643
Q ss_pred cCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCC
Q 000129 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2114)
Q Consensus 794 ~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2114)
.++..+||+|+..+|..+++.|++|.++|||||+++++|+|+|++++||+ |+++. +..+|+||+|||||
T Consensus 283 -~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~----~~~p~------s~~~~~Qr~GR~gR 351 (400)
T 1s2m_A 283 -YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVIN----FDFPK------TAETYLHRIGRSGR 351 (400)
T ss_dssp -CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEE----SSCCS------SHHHHHHHHCBSSC
T ss_pred -CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEE----eCCCC------CHHHHHHhcchhcC
Confidence 34678899999999999999999999999999999999999999999998 66654 78899999999999
Q ss_pred CCCCCceEEEEEcCCCcHHHHHHh
Q 000129 874 PQYDSYGEGIIITGHSELRYYLSL 897 (2114)
Q Consensus 874 ~g~d~~G~~iil~~~~e~~~~~~l 897 (2114)
.| ..|.|+++++..+...+.++
T Consensus 352 ~g--~~g~~~~l~~~~~~~~~~~i 373 (400)
T 1s2m_A 352 FG--HLGLAINLINWNDRFNLYKI 373 (400)
T ss_dssp TT--CCEEEEEEECGGGHHHHHHH
T ss_pred CC--CCceEEEEeccchHHHHHHH
Confidence 87 67999999999887665543
No 32
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=4.6e-39 Score=419.72 Aligned_cols=349 Identities=19% Similarity=0.232 Sum_probs=143.3
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA 557 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~ia 557 (2114)
.|++.+...+ .||..|+|+|.++++.++.+ +.++|++||||||||++|++|+++.+.... .++++||++
T Consensus 98 ~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~--------~~~~~lil~ 169 (479)
T 3fmp_B 98 RLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN--------KYPQCLCLS 169 (479)
T ss_dssp TCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTS--------CSCCEEEEC
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcC--------CCCcEEEEe
Confidence 4677776666 79999999999999999876 578999999999999999999998775432 245899999
Q ss_pred ccHHHHHHHHHHHHHhhccC-CcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccc
Q 000129 558 PMKALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2114)
Q Consensus 558 P~raLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (2114)
|+++|+.|+++.+.++.... ++.+....|+..........++|+|+||+++..+.++.. ...++++++|||||+|++.
T Consensus 170 Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~-~~~~~~~~~iViDEah~~~ 248 (479)
T 3fmp_B 170 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLK-FIDPKKIKVFVLDEADVMI 248 (479)
T ss_dssp SSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSC-CCCGGGCCEEEECCHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcC-CcCcccCCEEEEECHHHHh
Confidence 99999999999998876543 678888888887776666678999999999844443322 2456899999999999987
Q ss_pred cCCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEe-ecCC-cccccceeEEEeeccCchhH
Q 000129 637 DNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFY-FDNS-YRPVPLSQQYIGIQVKKPLQ 714 (2114)
Q Consensus 637 d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~-f~~~-~rpv~l~~~~~~~~~~~~~~ 714 (2114)
+..+.. ..+ ...........|+|++|||+++ .+..+.......+... .... ..+..+.+.++..... ..
T Consensus 249 ~~~~~~--~~~---~~i~~~~~~~~~~i~~SAT~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~ 319 (479)
T 3fmp_B 249 ATQGHQ--DQS---IRIQRMLPRNCQMLLFSATFED--SVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSR--DE 319 (479)
T ss_dssp TSTTHH--HHH---HHHHTTSCTTSEEEEEESCCCH--HHHHHHHHHSSSEEEEEEC-----------------------
T ss_pred hcCCcH--HHH---HHHHhhCCccceEEEEeCCCCH--HHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCH--HH
Confidence 633221 111 1223345678999999999885 3333333222222221 1111 1111222222211110 11
Q ss_pred HHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhcc
Q 000129 715 RFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLP 794 (2114)
Q Consensus 715 ~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~ 794 (2114)
+...+.. +......+++||||++++.|..++..|...+
T Consensus 320 ~~~~l~~-----~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~------------------------------------- 357 (479)
T 3fmp_B 320 KFQALCN-----LYGAITIAQAMIFCHTRKTASWLAAELSKEG------------------------------------- 357 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHH-----HHhhccCCceEEEeCcHHHHHHHHHHHHhCC-------------------------------------
Confidence 1111111 1222335789999999999999998886532
Q ss_pred CceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCC
Q 000129 795 YGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRP 874 (2114)
Q Consensus 795 ~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~ 874 (2114)
.++.++||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+++.|.++ ..+.+..+|+||+|||||.
T Consensus 358 ~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~----~~~~s~~~~~Qr~GRagR~ 433 (479)
T 3fmp_B 358 HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDK----DGNPDNETYLHRIGRTGRF 433 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCC----ccCCCHHHHHHHhcccccC
Confidence 357788999999999999999999999999999999999999999999994444332 2345788999999999998
Q ss_pred CCCCceEEEEEcCCCcHHHHH
Q 000129 875 QYDSYGEGIIITGHSELRYYL 895 (2114)
Q Consensus 875 g~d~~G~~iil~~~~e~~~~~ 895 (2114)
| ..|.|+++++..+...+.
T Consensus 434 g--~~G~~i~~~~~~~~~~~~ 452 (479)
T 3fmp_B 434 G--KRGLAVNMVDSKHSMNIL 452 (479)
T ss_dssp ---------------------
T ss_pred C--CCceEEEEEcCcchHHHH
Confidence 7 779999999876644443
No 33
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.2e-37 Score=395.07 Aligned_cols=347 Identities=16% Similarity=0.241 Sum_probs=252.4
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCC----------------C
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASET----------------G 1389 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~----------------~ 1389 (2114)
|.....+.+.. ||..|+|+|.++++.++.+ ++++++||||||||++|++|+++.+...... .
T Consensus 22 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~-~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (417)
T 2i4i_A 22 MGEIIMGNIELTRYTRPTPVQKHAIPIIKEK-RDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQ 100 (417)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSB
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHccC-CCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccC
Confidence 44455555544 7999999999999999875 5599999999999999999999887653211 1
Q ss_pred ceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccch--h-hccCCcEEEEChhhHHHHHhhhccccccccee
Q 000129 1390 VMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL--K-LLEKGQIIISTPEKWDALSRRWKQRKYVQQVS 1466 (2114)
Q Consensus 1390 ~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~--~-~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~ 1466 (2114)
.+++||++||++|+.|+++.++ .+....++++..++|+..... + ....++|+|+||+++..++... ...+.+++
T Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~--~~~~~~~~ 177 (417)
T 2i4i_A 101 YPISLVLAPTRELAVQIYEEAR-KFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERG--KIGLDFCK 177 (417)
T ss_dssp CCSEEEECSSHHHHHHHHHHHH-HHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT--SBCCTTCC
T ss_pred CccEEEECCcHHHHHHHHHHHH-HHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcC--CcChhhCc
Confidence 2479999999999999999998 455556889999999876542 2 2345699999999998887762 34578899
Q ss_pred EEEecccccccCCCCchHHHHHHHHHHHHhh--cC--CCceEEEEcccCCCh-hHHH-HHhcCCCCceeecCC-CCCccC
Q 000129 1467 LFIIDELHLIGGQGGPVLEVIVSRMRYIASQ--VE--NKIRIVALSTSLANA-KDLG-EWIGATSHGLFNFPP-GVRPVP 1539 (2114)
Q Consensus 1467 liIiDEaH~l~~~~g~~le~i~srl~~i~~~--~~--~~~riV~lSATl~n~-~dla-~wl~~~~~~~~~f~~-~~rpv~ 1539 (2114)
+||+||||++.+.. +...+..+... .+ ...+++++|||+++. ..+. .|++.. . ...... ...+..
T Consensus 178 ~iViDEah~~~~~~------~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~ 249 (417)
T 2i4i_A 178 YLVLDEADRMLDMG------FEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEY-I-FLAVGRVGSTSEN 249 (417)
T ss_dssp EEEESSHHHHHHTT------CHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSC-E-EEEEC----CCSS
T ss_pred EEEEEChhHhhccC------cHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCC-E-EEEeCCCCCCccC
Confidence 99999999887643 22223333321 12 267899999999763 3333 344322 1 111111 111122
Q ss_pred cEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhh
Q 000129 1540 LEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPF 1619 (2114)
Q Consensus 1540 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~ 1619 (2114)
+...+........ ......+......++++||||++++.|..++..|..
T Consensus 250 i~~~~~~~~~~~~--------~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~----------------------- 298 (417)
T 2i4i_A 250 ITQKVVWVEESDK--------RSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYH----------------------- 298 (417)
T ss_dssp EEEEEEECCGGGH--------HHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHH-----------------------
T ss_pred ceEEEEEeccHhH--------HHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHH-----------------------
Confidence 2222222211111 111222333334577899999999999998876632
Q ss_pred HhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCC
Q 000129 1620 IDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYP 1699 (2114)
Q Consensus 1620 ~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s 1699 (2114)
.+..+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++.+|| +++.|.+
T Consensus 299 ------------~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi----------~~~~p~s 356 (417)
T 2i4i_A 299 ------------EGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI----------NFDLPSD 356 (417)
T ss_dssp ------------TTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEE----------ESSCCSS
T ss_pred ------------CCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEE----------EEcCCCC
Confidence 245689999999999999999999999999999999999999999999999 7889999
Q ss_pred HhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHHHHHHhc
Q 000129 1700 VTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLRLT 1740 (2114)
Q Consensus 1700 ~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~~~lRl~ 1740 (2114)
..+|+||+|||||. +..|.|++++.+.+...++.+.+.+
T Consensus 357 ~~~~~Qr~GR~gR~--g~~g~~~~~~~~~~~~~~~~l~~~~ 395 (417)
T 2i4i_A 357 IEEYVHRIGRTGRV--GNLGLATSFFNERNINITKDLLDLL 395 (417)
T ss_dssp HHHHHHHHTTBCC----CCEEEEEEECGGGGGGHHHHHHHH
T ss_pred HHHHHHhcCccccC--CCCceEEEEEccccHHHHHHHHHHH
Confidence 99999999999998 5789999999988877776666433
No 34
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=5.9e-39 Score=418.65 Aligned_cols=354 Identities=17% Similarity=0.231 Sum_probs=159.4
Q ss_pred CCCCccCCCCCCcccccChhHHHHHhc-CCCCCCHHHHHHHHHHHcC-CCcEEEEecCCCchHHHHHHHHHHHhhhccCC
Q 000129 1311 PPPTELLDLQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNT-DDNVLVAAPTGSGKTICSEFAILRNHQKASET 1388 (2114)
Q Consensus 1311 ~~~t~lldl~p~~~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~-~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~ 1388 (2114)
.++.++.++.+++...|....++.++. ||..|+|+|.++++.++.+ +.+++++||||||||++|++|+++.+......
T Consensus 83 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~ 162 (479)
T 3fmp_B 83 DPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKY 162 (479)
T ss_dssp STTSCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCS
T ss_pred CCCCCccCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCC
Confidence 455666777888888888888888877 7999999999999999975 57899999999999999999999888763333
Q ss_pred CceEEEEEcccHHHHHHHHHHHHHHhcCC-CCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeE
Q 000129 1389 GVMRAVYIAPLEALAKERYRDWEIKFGQG-LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSL 1467 (2114)
Q Consensus 1389 ~~~k~l~I~Ptr~La~q~~~~~~~~f~~~-~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~l 1467 (2114)
+++|||+|+++|+.|+++.+++ +... .+..+....|+...........+|+|+||++|..++.+.. ...++++++
T Consensus 163 --~~~lil~Pt~~La~Q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~-~~~~~~~~~ 238 (479)
T 3fmp_B 163 --PQCLCLSPTYELALQTGKVIEQ-MGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLK-FIDPKKIKV 238 (479)
T ss_dssp --CCEEEECSSHHHHHHHHHHHHH-HHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSC-CCCGGGCCE
T ss_pred --CcEEEEeChHHHHHHHHHHHHH-HHhhCCCceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcC-CcCcccCCE
Confidence 3899999999999999999884 4443 4677888888766554444456999999999988876532 345689999
Q ss_pred EEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCChh-HHHHHhcCCCCceeecCCCCC-ccCcEEEEe
Q 000129 1468 FIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAK-DLGEWIGATSHGLFNFPPGVR-PVPLEIHIQ 1545 (2114)
Q Consensus 1468 iIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~-dla~wl~~~~~~~~~f~~~~r-pv~l~~~~~ 1545 (2114)
||+||+|.+.+..+ ....+..+...++.+.|+|++|||+++.. .++..+...+ ..+....... ...+...+.
T Consensus 239 iViDEah~~~~~~~-----~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~ 312 (479)
T 3fmp_B 239 FVLDEADVMIATQG-----HQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDP-NVIKLKREEETLDTIKQYYV 312 (479)
T ss_dssp EEECCHHHHHTSTT-----HHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSE-EEEEEC--------------
T ss_pred EEEECHHHHhhcCC-----cHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCC-eEEeccccccCcCCceEEEE
Confidence 99999998876332 33444455566677899999999998742 4444332221 1111111100 000000000
Q ss_pred cccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhH
Q 000129 1546 GVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQE 1625 (2114)
Q Consensus 1546 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d 1625 (2114)
... .... .......+... ...+++||||++++.|..++..|..
T Consensus 313 ~~~--~~~~-----~~~~l~~~~~~-~~~~~~lvF~~s~~~~~~l~~~L~~----------------------------- 355 (479)
T 3fmp_B 313 LCS--SRDE-----KFQALCNLYGA-ITIAQAMIFCHTRKTASWLAAELSK----------------------------- 355 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EeC--CHHH-----HHHHHHHHHhh-ccCCceEEEeCcHHHHHHHHHHHHh-----------------------------
Confidence 000 0000 00011111222 2457899999999999888866522
Q ss_pred HHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCC------CC
Q 000129 1626 EMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTD------YP 1699 (2114)
Q Consensus 1626 ~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~------~s 1699 (2114)
.+.++.++||+|++.+|..+++.|++|+++|||||+++++|+|+|++.+|| +++.| .+
T Consensus 356 ------~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI----------~~d~p~~~~~~~s 419 (479)
T 3fmp_B 356 ------EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVI----------NFDLPVDKDGNPD 419 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------CCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEE----------EecCCCCCccCCC
Confidence 245689999999999999999999999999999999999999999999999 67776 56
Q ss_pred HhHHHHhHcccCCCCCCCceEEEEEeecCc
Q 000129 1700 VTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1700 ~~~~lQr~GRAGR~~~~~~G~~iil~~~~~ 1729 (2114)
..+|+||+|||||. +..|.|++++...+
T Consensus 420 ~~~~~Qr~GRagR~--g~~G~~i~~~~~~~ 447 (479)
T 3fmp_B 420 NETYLHRIGRTGRF--GKRGLAVNMVDSKH 447 (479)
T ss_dssp ------------------------------
T ss_pred HHHHHHHhcccccC--CCCceEEEEEcCcc
Confidence 78999999999997 68899999998765
No 35
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=9.4e-38 Score=399.59 Aligned_cols=340 Identities=19% Similarity=0.327 Sum_probs=243.4
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
.+++++.+.+ .||..|+++|.++++.++.+. +++++||||||||++|++++++.+.... .+.+++|++|
T Consensus 46 ~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~-~~lv~a~TGsGKT~~~~~~~~~~~~~~~--------~~~~~lil~P 116 (414)
T 3eiq_A 46 NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGY-DVIAQAQSGTGKTATFAISILQQIELDL--------KATQALVLAP 116 (414)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTC-CEEECCCSCSSSHHHHHHHHHHHCCTTS--------CSCCEEEECS
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCC-CEEEECCCCCcccHHHHHHHHHHHhhcC--------CceeEEEEeC
Confidence 4677777776 689999999999999988765 4999999999999999999998875431 2347999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh----hccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccc
Q 000129 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ----IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIH 633 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~----~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH 633 (2114)
+++|+.|+++.+.+++...++.+..++|+....... ...++|+|+||+++ +.+.+.. ..+..+++||+||||
T Consensus 117 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~---~~~~~~~~vViDEah 193 (414)
T 3eiq_A 117 TRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRY---LSPKYIKMFVLDEAD 193 (414)
T ss_dssp SHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTS---SCSTTCCEEEECSHH
T ss_pred hHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCC---cccccCcEEEEECHH
Confidence 999999999999998888899999999987654432 25789999999997 5555533 345678999999999
Q ss_pred cccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeec--CCcccccceeEEEeeccC
Q 000129 634 LLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFD--NSYRPVPLSQQYIGIQVK 710 (2114)
Q Consensus 634 ~l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~--~~~rpv~l~~~~~~~~~~ 710 (2114)
++.+ .++..+..++ .......|+++||||+++ .+..+............. ....+..+.+.+......
T Consensus 194 ~~~~~~~~~~~~~~~-------~~~~~~~~~i~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (414)
T 3eiq_A 194 EMLSRGFKDQIYDIF-------QKLNSNTQVVLLSATMPS--DVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVERE 264 (414)
T ss_dssp HHHHTTTHHHHHHHH-------TTSCTTCEEEEECSCCCH--HHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSS
T ss_pred HhhccCcHHHHHHHH-------HhCCCCCeEEEEEEecCH--HHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChH
Confidence 9875 4554444433 334678999999999873 444444433223322221 112222333444333222
Q ss_pred chhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhh
Q 000129 711 KPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK 790 (2114)
Q Consensus 711 ~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~ 790 (2114)
. .+...+ ..+......+++||||++++.+..++..|...+
T Consensus 265 ~--~~~~~l-----~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~--------------------------------- 304 (414)
T 3eiq_A 265 E--WKLDTL-----CDLYETLTITQAVIFINTRRKVDWLTEKMHARD--------------------------------- 304 (414)
T ss_dssp T--THHHHH-----HHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTT---------------------------------
T ss_pred H--hHHHHH-----HHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcC---------------------------------
Confidence 1 122221 123344456799999999999999998886532
Q ss_pred hhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcc
Q 000129 791 DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGR 870 (2114)
Q Consensus 791 ~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GR 870 (2114)
.++..+||+|+..+|..+++.|++|.++|||||+++++|+|+|++++||+ |+++. +..+|+||+||
T Consensus 305 ----~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~----~~~p~------s~~~~~Qr~GR 370 (414)
T 3eiq_A 305 ----FTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YDLPT------NRENYIHRIGR 370 (414)
T ss_dssp ----CCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEE----SSCCS------STHHHHHHSCC
T ss_pred ----CeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEE----eCCCC------CHHHhhhhcCc
Confidence 35778899999999999999999999999999999999999999999998 66554 67889999999
Q ss_pred cCCCCCCCceEEEEEcCCCcHHHHHHh
Q 000129 871 AGRPQYDSYGEGIIITGHSELRYYLSL 897 (2114)
Q Consensus 871 AGR~g~d~~G~~iil~~~~e~~~~~~l 897 (2114)
|||.| ..|.|+++++..+...+..+
T Consensus 371 ~gR~g--~~g~~~~~~~~~~~~~~~~~ 395 (414)
T 3eiq_A 371 GGRFG--RKGVAINMVTEEDKRTLRDI 395 (414)
T ss_dssp C---------CEEEEECSTHHHHHHHH
T ss_pred ccCCC--CCceEEEEEcHHHHHHHHHH
Confidence 99987 67999999999887666543
No 36
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=2.1e-36 Score=385.41 Aligned_cols=345 Identities=20% Similarity=0.252 Sum_probs=260.2
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHH
Q 000129 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (2114)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~ 1404 (2114)
.|.....+.++. ||..|+|+|.++++.+++++ +++++||||||||++|++|++..+.....+. ++||++|+++|+.
T Consensus 27 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~-~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~--~~lil~P~~~L~~ 103 (400)
T 1s2m_A 27 YLKRELLMGIFEAGFEKPSPIQEEAIPVAITGR-DILARAKNGTGKTAAFVIPTLEKVKPKLNKI--QALIMVPTRELAL 103 (400)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTC-CEEEECCTTSCHHHHHHHHHHHHCCTTSCSC--CEEEECSSHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCC-CEEEECCCCcHHHHHHHHHHHHHHhhccCCc--cEEEEcCCHHHHH
Confidence 355566777765 79999999999999999864 5999999999999999999998876532333 8999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcCCcccch---hhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCC
Q 000129 1405 ERYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2114)
Q Consensus 1405 q~~~~~~~~f~~~~g~~v~~l~G~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g 1481 (2114)
|+++.++ .+....++++..++|+..... .....++|+|+||+++..++.+ ....+.++++||+||||++.+..
T Consensus 104 q~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~--~~~~~~~~~~vIiDEaH~~~~~~- 179 (400)
T 1s2m_A 104 QTSQVVR-TLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASR--KVADLSDCSLFIMDEADKMLSRD- 179 (400)
T ss_dssp HHHHHHH-HHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT--TCSCCTTCCEEEEESHHHHSSHH-
T ss_pred HHHHHHH-HHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHh--CCcccccCCEEEEeCchHhhhhc-
Confidence 9999998 455556889999999876542 2235669999999999877765 23457889999999999886532
Q ss_pred chHHHHHHHHHHHHhhcCCCceEEEEcccCCCh--hHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhc
Q 000129 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAM 1559 (2114)
Q Consensus 1482 ~~le~i~srl~~i~~~~~~~~riV~lSATl~n~--~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~ 1559 (2114)
+...+..+...++...+++++|||++.. ..+..+++.. .............+...+....... ..
T Consensus 180 -----~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---k~--- 246 (400)
T 1s2m_A 180 -----FKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKP--YEINLMEELTLKGITQYYAFVEERQ---KL--- 246 (400)
T ss_dssp -----HHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSC--EEESCCSSCBCTTEEEEEEECCGGG---HH---
T ss_pred -----hHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCC--eEEEeccccccCCceeEEEEechhh---HH---
Confidence 3334445555566789999999999753 1233344322 1122222222222332222221111 00
Q ss_pred CHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEee
Q 000129 1560 TKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYL 1639 (2114)
Q Consensus 1560 ~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~ 1639 (2114)
.....+... ...+++||||++++.+..++..|.. .+.++..+
T Consensus 247 --~~l~~~~~~-~~~~~~lVf~~~~~~~~~l~~~L~~-----------------------------------~~~~~~~~ 288 (400)
T 1s2m_A 247 --HCLNTLFSK-LQINQAIIFCNSTNRVELLAKKITD-----------------------------------LGYSCYYS 288 (400)
T ss_dssp --HHHHHHHHH-SCCSEEEEECSSHHHHHHHHHHHHH-----------------------------------HTCCEEEE
T ss_pred --HHHHHHHhh-cCCCcEEEEEecHHHHHHHHHHHHh-----------------------------------cCCCeEEe
Confidence 112223333 4567899999999999988876632 24578999
Q ss_pred cCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCce
Q 000129 1640 HEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSG 1719 (2114)
Q Consensus 1640 H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G 1719 (2114)
||+|+..+|..+++.|++|+++|||||+++++|+|+|++.+|| +++.|.+..+|+||+|||||. +..|
T Consensus 289 ~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi----------~~~~p~s~~~~~Qr~GR~gR~--g~~g 356 (400)
T 1s2m_A 289 HARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVI----------NFDFPKTAETYLHRIGRSGRF--GHLG 356 (400)
T ss_dssp CTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEE----------ESSCCSSHHHHHHHHCBSSCT--TCCE
T ss_pred cCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEE----------EeCCCCCHHHHHHhcchhcCC--CCCc
Confidence 9999999999999999999999999999999999999999999 788999999999999999998 5789
Q ss_pred EEEEEeecCcHHHHHHHHHhc
Q 000129 1720 KCVILCHAPRKEYYKKFLRLT 1740 (2114)
Q Consensus 1720 ~~iil~~~~~~~~~~~~lRl~ 1740 (2114)
.|++++...+...++++.+..
T Consensus 357 ~~~~l~~~~~~~~~~~i~~~~ 377 (400)
T 1s2m_A 357 LAINLINWNDRFNLYKIEQEL 377 (400)
T ss_dssp EEEEEECGGGHHHHHHHHHHH
T ss_pred eEEEEeccchHHHHHHHHHHh
Confidence 999999999888877777543
No 37
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=6.8e-38 Score=424.26 Aligned_cols=469 Identities=15% Similarity=0.175 Sum_probs=308.3
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
+++.+...+ .+ ..|+++|+++++.++.++++++++||||||||++ +|++-...... . ..+.+++|++|+
T Consensus 79 l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtl--lp~ll~~~~~~-~-----~~g~~ilvl~P~ 149 (773)
T 2xau_A 79 FTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQ--IPQFVLFDEMP-H-----LENTQVACTQPR 149 (773)
T ss_dssp CCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHH--HHHHHHHHHCG-G-----GGTCEEEEEESC
T ss_pred CCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHH--HHHHHHHhccc-c-----CCCceEEecCch
Confidence 355566555 34 6789999999999999999999999999999994 44441111110 0 023579999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCC-CccChhhhccceEEEcCHhHHH-HHHhccCCCcccccccEEEEeccccccc
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGD-QTLTRQQIEETQIIVTTPEKWD-IITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd-~~~~~~~~~~~~IiV~TPek~d-~l~r~~~~~~~l~~v~liIiDEaH~l~d 637 (2114)
++|+.|+++++.+.++ +.++..+|. ..........++|+|+||+++. .+... ..+.++++|||||+|.
T Consensus 150 r~La~q~~~~l~~~~~---~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~----~~l~~~~~lIlDEah~--- 219 (773)
T 2xau_A 150 RVAAMSVAQRVAEEMD---VKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMED----HDLSRYSCIILDEAHE--- 219 (773)
T ss_dssp HHHHHHHHHHHHHHTT---CCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHS----TTCTTEEEEEECSGGG---
T ss_pred HHHHHHHHHHHHHHhC---CchhheecceeccccccCCCCCEEEECHHHHHHHHhhC----ccccCCCEEEecCccc---
Confidence 9999999998876553 333222221 1122222357899999999863 33332 4688899999999995
Q ss_pred CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHH
Q 000129 638 NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQ 717 (2114)
Q Consensus 638 ~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~ 717 (2114)
|+...+.++..+ +.+....++.++|+||||+ +.+.++.|++.. .++.... +..|+.+.+........ ..
T Consensus 220 -R~ld~d~~~~~l-~~l~~~~~~~~iIl~SAT~-~~~~l~~~~~~~---~vi~v~g--r~~pv~~~~~~~~~~~~---~~ 288 (773)
T 2xau_A 220 -RTLATDILMGLL-KQVVKRRPDLKIIIMSATL-DAEKFQRYFNDA---PLLAVPG--RTYPVELYYTPEFQRDY---LD 288 (773)
T ss_dssp -CCHHHHHHHHHH-HHHHHHCTTCEEEEEESCS-CCHHHHHHTTSC---CEEECCC--CCCCEEEECCSSCCSCH---HH
T ss_pred -cccchHHHHHHH-HHHHHhCCCceEEEEeccc-cHHHHHHHhcCC---CcccccC--cccceEEEEecCCchhH---HH
Confidence 222222222222 2222334678999999998 568888888632 2333333 34455554443322221 11
Q ss_pred HhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCce
Q 000129 718 LMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGF 797 (2114)
Q Consensus 718 ~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv 797 (2114)
.+...+.+ +.....++++||||+++++++.++..|....... .. ........+
T Consensus 289 ~~l~~l~~-~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l----------------~~----------~~~~~~~~v 341 (773)
T 2xau_A 289 SAIRTVLQ-IHATEEAGDILLFLTGEDEIEDAVRKISLEGDQL----------------VR----------EEGCGPLSV 341 (773)
T ss_dssp HHHHHHHH-HHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHH----------------HH----------HHCCCCEEE
T ss_pred HHHHHHHH-HHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhh----------------cc----------cccCCCeEE
Confidence 11222222 2223347899999999999999999997642110 00 000112458
Q ss_pred EEecCCCCHHHHHHHHHHHh-----CCCceEEEechHhhhhcCCCceEEEEecce----eccCCCCcc----ccCCHHHH
Q 000129 798 AIHHAGMTRGDRQLVEDLFG-----DGHVQVLVSTATLAWGVNLPAHTVIIKGTQ----IYNPEKGAW----TELSPLDI 864 (2114)
Q Consensus 798 ~~hHagl~~~~R~~v~~~F~-----~g~i~VLVaT~tla~GVdlP~v~vVI~~~~----~yd~~~g~~----~~~s~~~~ 864 (2114)
..+||+|++.+|..+++.|+ +|.++|||||+++++|||+|++++||+++. .||+..|.. .++|..+|
T Consensus 342 ~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~ 421 (773)
T 2xau_A 342 YPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASA 421 (773)
T ss_dssp EEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHH
T ss_pred EEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHH
Confidence 89999999999999999999 999999999999999999999999999644 589887644 37899999
Q ss_pred HHhhcccCCCCCCCceEEEEEcCCCcHHHHHHhhcCCCcccchhhHhhHHHHHHHHhhccccChHHHHHHHHhhHHHHhh
Q 000129 865 MQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRM 944 (2114)
Q Consensus 865 ~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~~ll~~~~pies~l~~~l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~~r~ 944 (2114)
+||+|||||. ..|.||++++..+. ...+.....| | -+...|...+.....+| +.
T Consensus 422 ~QR~GRaGR~---~~G~~~~l~~~~~~--~~~l~~~~~p-E-i~r~~L~~~~L~l~~~g-i~------------------ 475 (773)
T 2xau_A 422 QQRAGRAGRT---RPGKCFRLYTEEAF--QKELIEQSYP-E-ILRSNLSSTVLELKKLG-ID------------------ 475 (773)
T ss_dssp HHHHHGGGSS---SSEEEEESSCHHHH--HHTSCSSCCC-G-GGGSCCHHHHHHHHHTT-CC------------------
T ss_pred HhhccccCCC---CCCEEEEEecHHHh--cccccccCCC-c-cccCcHHHHHHHHHHcC-CC------------------
Confidence 9999999997 58999999975442 1222222222 1 11122222222211111 11
Q ss_pred ccCCcccCCCcccccccchhhhhhHHHHHHHHHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHHHHhhcCCCC
Q 000129 945 LRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTM 1024 (2114)
Q Consensus 945 ~~np~~y~~~~~~~~~~~~l~~~~~~li~~al~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~ 1024 (2114)
++..+ +.++.+..+.+..|+..|...|+|+.+ | .+|++|+++|.||++|.++++++.+....|
T Consensus 476 --~~~~f----------~~~~~p~~~~i~~a~~~L~~lgald~~---~--~lT~lG~~~a~~pl~p~~~~~l~~~~~~~c 538 (773)
T 2xau_A 476 --DLVHF----------DFMDPPAPETMMRALEELNYLACLDDE---G--NLTPLGRLASQFPLDPMLAVMLIGSFEFQC 538 (773)
T ss_dssp --CGGGC----------CCSSCCCHHHHHHHHHHHHHTTSBCTT---S--CBCHHHHHHTTSSSCHHHHHHHHHGGGGTC
T ss_pred --Chhhc----------cccCCCcHHHHHHHHHHHHHcCCcccC---C--CcChhhhhhccccCCHHHHHHHHhhcccCc
Confidence 11001 111222346789999999999999633 3 699999999999999999999998877666
Q ss_pred CHHHHHHHhhCCccCCCCcCChhHHHHH
Q 000129 1025 GDIELCRLFSLSEEFKYVTVRQDEKMEL 1052 (2114)
Q Consensus 1025 ~~~~~l~i~s~s~ef~~i~~r~~e~~~l 1052 (2114)
. .+++.|+|+.+ +.++.+|+.++.+.
T Consensus 539 ~-~~~l~i~a~ls-~~~~f~~~~~~~~~ 564 (773)
T 2xau_A 539 S-QEILTIVAMLS-VPNVFIRPTKDKKR 564 (773)
T ss_dssp H-HHHHHHHHHHT-SCCCBCCCTTCHHH
T ss_pred h-hHHHHHHHhcc-cCCcccCChHHHHH
Confidence 4 67777777765 46777777655443
No 38
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=7.2e-37 Score=388.25 Aligned_cols=337 Identities=20% Similarity=0.266 Sum_probs=249.3
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
.|++.+...+ .||.+|+|+|.++++.++.+ .+++++||||+|||++|+++++..+.... .+.++||++|
T Consensus 14 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~~~~~~~l~~~~--------~~~~~lil~P 84 (391)
T 1xti_A 14 LLKPELLRAIVDCGFEHPSEVQHECIPQAILG-MDVLCQAKSGMGKTAVFVLATLQQLEPVT--------GQVSVLVMCH 84 (391)
T ss_dssp CCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTT-CCEEEECSSCSSHHHHHHHHHHHHCCCCT--------TCCCEEEECS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC-CcEEEECCCCCcHHHHHHHHHHHhhcccC--------CCeeEEEECC
Confidence 3567777766 58999999999999998876 56999999999999999999998864321 2458999999
Q ss_pred cHHHHHHHHHHHHHhhccC-CcEEEEEeCCCccChhh----hccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccc
Q 000129 559 MKALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ----IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIH 633 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~----~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH 633 (2114)
+++|+.|+++.+.++.... ++++..++|+....... ...++|+|+||+++..+.+... ..+.++++||+||||
T Consensus 85 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~--~~~~~~~~vViDEaH 162 (391)
T 1xti_A 85 TRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS--LNLKHIKHFILDECD 162 (391)
T ss_dssp CHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS--SCCTTCSEEEECSHH
T ss_pred CHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCC--ccccccCEEEEeCHH
Confidence 9999999999999887655 78999999987654432 1347999999999855544432 357789999999999
Q ss_pred ccccCCchhHHHHHHHHHHHHhhccccccEEEEccccCCh-HH-HHHHHhccccCceEe-ecCCc--ccccceeEEEeec
Q 000129 634 LLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY-ED-VALFLRVNLEKGLFY-FDNSY--RPVPLSQQYIGIQ 708 (2114)
Q Consensus 634 ~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~-~d-va~~l~~~~~~~~~~-f~~~~--rpv~l~~~~~~~~ 708 (2114)
++.+.. .+...+.+ .....+...+++++|||+++. .. +..++. .+... ..... ....+.+.+....
T Consensus 163 ~~~~~~--~~~~~~~~---~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (391)
T 1xti_A 163 KMLEQL--DMRRDVQE---IFRMTPHEKQVMMFSATLSKEIRPVCRKFMQ----DPMEIFVDDETKLTLHGLQQYYVKLK 233 (391)
T ss_dssp HHTSSH--HHHHHHHH---HHHTSCSSSEEEEEESSCCSTHHHHHHHHCS----SCEEEECCCCCCCCCTTCEEEEEECC
T ss_pred HHhhcc--chHHHHHH---HHhhCCCCceEEEEEeeCCHHHHHHHHHHcC----CCeEEEecCccccCcccceEEEEEcC
Confidence 987531 12222222 223345688999999999862 22 223332 22222 22221 2223344443332
Q ss_pred cCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcch
Q 000129 709 VKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSND 788 (2114)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~ 788 (2114)
.. .+...+ .+ +.....++++||||++++.+..++..|...+
T Consensus 234 ~~---~~~~~l----~~-~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~------------------------------- 274 (391)
T 1xti_A 234 DN---EKNRKL----FD-LLDVLEFNQVVIFVKSVQRCIALAQLLVEQN------------------------------- 274 (391)
T ss_dssp GG---GHHHHH----HH-HHHHSCCSEEEEECSCHHHHHHHHHHHHHTT-------------------------------
T ss_pred ch---hHHHHH----HH-HHHhcCCCcEEEEeCcHHHHHHHHHHHHhCC-------------------------------
Confidence 22 122222 22 2233467899999999999999999887643
Q ss_pred hhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhh
Q 000129 789 LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQML 868 (2114)
Q Consensus 789 L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~ 868 (2114)
..+..+||+|+..+|..+++.|++|..+|||||+++++|+|+|++++||+ |+++. |..+|+||+
T Consensus 275 ------~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~----~~~p~------s~~~~~Qr~ 338 (391)
T 1xti_A 275 ------FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFN----YDMPE------DSDTYLHRV 338 (391)
T ss_dssp ------CCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEE----SSCCS------SHHHHHHHH
T ss_pred ------CcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEE----eCCCC------CHHHHHHhc
Confidence 23677899999999999999999999999999999999999999999998 66654 788999999
Q ss_pred cccCCCCCCCceEEEEEcCCCcHHHH
Q 000129 869 GRAGRPQYDSYGEGIIITGHSELRYY 894 (2114)
Q Consensus 869 GRAGR~g~d~~G~~iil~~~~e~~~~ 894 (2114)
|||||.| ..|.++++++..+...+
T Consensus 339 GR~~R~g--~~g~~~~~~~~~~~~~~ 362 (391)
T 1xti_A 339 ARAGRFG--TKGLAITFVSDENDAKI 362 (391)
T ss_dssp CBCSSSC--CCCEEEEEECSHHHHHH
T ss_pred ccccCCC--CceEEEEEEcccchHHH
Confidence 9999987 67999999987654433
No 39
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=6.2e-37 Score=408.17 Aligned_cols=366 Identities=17% Similarity=0.235 Sum_probs=266.5
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcC-CCcEEEEecCCCchHHHHHHHHHHHhhhcc--CCCceEEEEEcccHHH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNT-DDNVLVAAPTGSGKTICSEFAILRNHQKAS--ETGVMRAVYIAPLEAL 1402 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~-~~nvli~ApTGSGKTl~~~l~il~~l~~~~--~~~~~k~l~I~Ptr~L 1402 (2114)
|.....+.+.. ||..|+|+|.++++.++.+ +.+++++||||||||++|++|+++.+.... ...++++|||+||++|
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~L 107 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 107 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHH
Confidence 44455555544 7999999999999999953 567999999999999999999999887642 1223589999999999
Q ss_pred HHHHHHHHHHHhcC---CCCcEEEEEcCCcccch--hhc--cCCcEEEEChhhHHHHHhhhcccccccceeEEEeccccc
Q 000129 1403 AKERYRDWEIKFGQ---GLGMRVVELTGETAMDL--KLL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHL 1475 (2114)
Q Consensus 1403 a~q~~~~~~~~f~~---~~g~~v~~l~G~~~~~~--~~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~ 1475 (2114)
+.|+++.+++.+.. .....+..+.|+..... ..+ ..++|+|+||+++..++.+.. ...+..+++||+||||+
T Consensus 108 a~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~-~~~~~~~~~lViDEah~ 186 (579)
T 3sqw_A 108 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYS-NKFFRFVDYKVLDEADR 186 (579)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH-HHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcc-ccccccCCEEEEEChHH
Confidence 99999999964421 22456777777765432 222 357999999999988777642 33578899999999999
Q ss_pred ccCC-CCchHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHHHhcCCCCceee-cCCCCCc---cCcEEEEecccc
Q 000129 1476 IGGQ-GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFN-FPPGVRP---VPLEIHIQGVDI 1549 (2114)
Q Consensus 1476 l~~~-~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~wl~~~~~~~~~-f~~~~rp---v~l~~~~~~~~~ 1549 (2114)
+.++ .++.++.++..+.........+.|+++||||+++. ..++.++...+..++. ......+ ..+.......
T Consensus 187 l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-- 264 (579)
T 3sqw_A 187 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVIS-- 264 (579)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEE--
T ss_pred hhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEe--
Confidence 9876 36677777777766544445688999999999874 4555554433322221 1111111 1111111111
Q ss_pred cchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHH
Q 000129 1550 TNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLK 1629 (2114)
Q Consensus 1550 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~ 1629 (2114)
.................+... ..+.++||||+|++.|..++..|.....
T Consensus 265 ~~~~~~~~~~~~~l~~~~~~~-~~~~~~iVF~~t~~~~~~l~~~L~~~~~------------------------------ 313 (579)
T 3sqw_A 265 EKFANSIFAAVEHIKKQIKER-DSNYKAIIFAPTVKFTSFLCSILKNEFK------------------------------ 313 (579)
T ss_dssp SSTTHHHHHHHHHHHHHHHHT-TTCCEEEEECSSHHHHHHHHHHHHHHHT------------------------------
T ss_pred cchhhhHHHHHHHHHHHHhhc-CCCCcEEEECCcHHHHHHHHHHHHHhhc------------------------------
Confidence 111111111111112222221 4567899999999999999977743211
Q ss_pred HHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcc
Q 000129 1630 ATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGH 1709 (2114)
Q Consensus 1630 ~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GR 1709 (2114)
.+..+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++.+|| +++.|.+..+|+||+||
T Consensus 314 --~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI----------~~~~p~s~~~y~Qr~GR 381 (579)
T 3sqw_A 314 --KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVL----------QIGVPSELANYIHRIGR 381 (579)
T ss_dssp --TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEE----------EESCCSSTTHHHHHHTT
T ss_pred --CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEE----------EcCCCCCHHHhhhhccc
Confidence 134689999999999999999999999999999999999999999999999 88999999999999999
Q ss_pred cCCCCCCCceEEEEEeecCcHHHHHHHHHhc
Q 000129 1710 ASRPLLDNSGKCVILCHAPRKEYYKKFLRLT 1740 (2114)
Q Consensus 1710 AGR~~~~~~G~~iil~~~~~~~~~~~~lRl~ 1740 (2114)
|||. +..|.|++++...+..+++.+.+..
T Consensus 382 agR~--g~~g~~i~~~~~~e~~~~~~l~~~~ 410 (579)
T 3sqw_A 382 TARS--GKEGSSVLFICKDELPFVRELEDAK 410 (579)
T ss_dssp SSCT--TCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred cccC--CCCceEEEEEcccHHHHHHHHHHHh
Confidence 9998 5799999999998888887776543
No 40
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=3.3e-37 Score=394.47 Aligned_cols=351 Identities=17% Similarity=0.269 Sum_probs=246.2
Q ss_pred ccccChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHH
Q 000129 1324 VTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEAL 1402 (2114)
Q Consensus 1324 ~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~L 1402 (2114)
-..+.....+.+.. ||..|+|+|.++++.++++.+ ++++||||||||++|.+++++.+......+ +++|++|+++|
T Consensus 44 ~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~-~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~--~~lil~P~~~L 120 (414)
T 3eiq_A 44 DMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYD-VIAQAQSGTGKTATFAISILQQIELDLKAT--QALVLAPTREL 120 (414)
T ss_dssp GGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCC-EEECCCSCSSSHHHHHHHHHHHCCTTSCSC--CEEEECSSHHH
T ss_pred hCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCC-EEEECCCCCcccHHHHHHHHHHHhhcCCce--eEEEEeChHHH
Confidence 33455566666654 799999999999999998554 999999999999999999999887633334 89999999999
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEcCCcccchh--hc--cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC
Q 000129 1403 AKERYRDWEIKFGQGLGMRVVELTGETAMDLK--LL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (2114)
Q Consensus 1403 a~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~--~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~ 1478 (2114)
+.|+++.++ .++...+..+..+.|+...... .+ ..++|+|+||+++..++.+ ....+.++++||+||||.+.+
T Consensus 121 ~~q~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~--~~~~~~~~~~vViDEah~~~~ 197 (414)
T 3eiq_A 121 AQQIQKVVM-ALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR--RYLSPKYIKMFVLDEADEMLS 197 (414)
T ss_dssp HHHHHHHHH-HHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHH--TSSCSTTCCEEEECSHHHHHH
T ss_pred HHHHHHHHH-HHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHc--CCcccccCcEEEEECHHHhhc
Confidence 999999999 4665568888888887665421 22 4569999999998877765 234577899999999998865
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHH
Q 000129 1479 QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQ 1557 (2114)
Q Consensus 1479 ~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~ 1557 (2114)
.. +...+..+...++.+.|+|++|||+++. ..+...+......+........+..+.............
T Consensus 198 ~~------~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 267 (414)
T 3eiq_A 198 RG------FKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWK---- 267 (414)
T ss_dssp TT------THHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTH----
T ss_pred cC------cHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhH----
Confidence 43 3344455556667889999999999753 233332222221111111111222222222211111110
Q ss_pred hcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceE
Q 000129 1558 AMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637 (2114)
Q Consensus 1558 ~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~ 1637 (2114)
...+..+... ...+++||||++++.|..++..|.. .+.++.
T Consensus 268 ---~~~l~~~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~-----------------------------------~~~~~~ 308 (414)
T 3eiq_A 268 ---LDTLCDLYET-LTITQAVIFINTRRKVDWLTEKMHA-----------------------------------RDFTVS 308 (414)
T ss_dssp ---HHHHHHHHHS-SCCSSCEEECSCHHHHHHHHHHHHT-----------------------------------TTCCCE
T ss_pred ---HHHHHHHHHh-CCCCcEEEEeCCHHHHHHHHHHHHh-----------------------------------cCCeEE
Confidence 1112223333 3567899999999999998876632 245689
Q ss_pred eecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCC
Q 000129 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDN 1717 (2114)
Q Consensus 1638 ~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~ 1717 (2114)
.+||+|+..+|..+++.|++|.++|||||+++++|+|+|++.+|| +++.|.+..+|+||+|||||. +.
T Consensus 309 ~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi----------~~~~p~s~~~~~Qr~GR~gR~--g~ 376 (414)
T 3eiq_A 309 AMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI----------NYDLPTNRENYIHRIGRGGRF--GR 376 (414)
T ss_dssp EC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEE----------ESSCCSSTHHHHHHSCCC-------
T ss_pred EecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEE----------EeCCCCCHHHhhhhcCcccCC--CC
Confidence 999999999999999999999999999999999999999999999 788999999999999999997 57
Q ss_pred ceEEEEEeecCcHHHHHHHHHhcc
Q 000129 1718 SGKCVILCHAPRKEYYKKFLRLTQ 1741 (2114)
Q Consensus 1718 ~G~~iil~~~~~~~~~~~~lRl~~ 1741 (2114)
.|.|++++...+...++.+.+...
T Consensus 377 ~g~~~~~~~~~~~~~~~~~~~~~~ 400 (414)
T 3eiq_A 377 KGVAINMVTEEDKRTLRDIETFYN 400 (414)
T ss_dssp --CEEEEECSTHHHHHHHHHHHTT
T ss_pred CceEEEEEcHHHHHHHHHHHHHHc
Confidence 899999999998888887765443
No 41
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=9.7e-37 Score=383.22 Aligned_cols=335 Identities=21% Similarity=0.356 Sum_probs=252.9
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
|++++...+ .||.+|+|+|.++++.++.++.+++++||||||||++|+++++..+... .+.+++|++|+
T Consensus 13 l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~---------~~~~~lil~P~ 83 (367)
T 1hv8_A 13 LSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN---------NGIEAIILTPT 83 (367)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS---------SSCCEEEECSC
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc---------CCCcEEEEcCC
Confidence 567777776 6899999999999999998877899999999999999999998876532 24589999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCccChh--hhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d 637 (2114)
++|+.|+++.+.+.+...++++..++|+...... ....++|+|+||+++....... ...+.++++||+||||.+.+
T Consensus 84 ~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~--~~~~~~~~~iIiDEah~~~~ 161 (367)
T 1hv8_A 84 RELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRG--TLNLKNVKYFILDEADEMLN 161 (367)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTT--CSCTTSCCEEEEETHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcC--CcccccCCEEEEeCchHhhh
Confidence 9999999999999988888999999998765442 2457899999999974333332 23567899999999999876
Q ss_pred -CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHH
Q 000129 638 -NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRF 716 (2114)
Q Consensus 638 -~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~ 716 (2114)
.+...+..+ ........+++++|||+++ .+..++........+.. ...+..+.+.+...... .+.
T Consensus 162 ~~~~~~~~~~-------~~~~~~~~~~i~~SAT~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~ 227 (367)
T 1hv8_A 162 MGFIKDVEKI-------LNACNKDKRILLFSATMPR--EILNLAKKYMGDYSFIK--AKINANIEQSYVEVNEN---ERF 227 (367)
T ss_dssp TTTHHHHHHH-------HHTSCSSCEEEEECSSCCH--HHHHHHHHHCCSEEEEE--CCSSSSSEEEEEECCGG---GHH
T ss_pred hchHHHHHHH-------HHhCCCCceEEEEeeccCH--HHHHHHHHHcCCCeEEE--ecCCCCceEEEEEeChH---HHH
Confidence 333333332 2334578899999999874 23333322211212211 11222344444433322 222
Q ss_pred HHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCc
Q 000129 717 QLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYG 796 (2114)
Q Consensus 717 ~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~g 796 (2114)
..+.+. + . ..++++||||++++.+..++..|...+ .+
T Consensus 228 ~~l~~~----l-~-~~~~~~lvf~~~~~~~~~l~~~L~~~~-------------------------------------~~ 264 (367)
T 1hv8_A 228 EALCRL----L-K-NKEFYGLVFCKTKRDTKELASMLRDIG-------------------------------------FK 264 (367)
T ss_dssp HHHHHH----H-C-STTCCEEEECSSHHHHHHHHHHHHHTT-------------------------------------CC
T ss_pred HHHHHH----H-h-cCCCcEEEEECCHHHHHHHHHHHHhcC-------------------------------------CC
Confidence 222211 1 1 236789999999999999999887632 34
Q ss_pred eEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCC
Q 000129 797 FAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY 876 (2114)
Q Consensus 797 v~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~ 876 (2114)
+..+||+|+..+|..+++.|++|.++|||||+++++|+|+|++++||+ |+++. |..+|+||+|||||.|
T Consensus 265 ~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~----~~~~~------s~~~~~Q~~GR~~R~g- 333 (367)
T 1hv8_A 265 AGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVIN----YHLPQ------NPESYMHRIGRTGRAG- 333 (367)
T ss_dssp EEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEE----SSCCS------CHHHHHHHSTTTCCSS-
T ss_pred eEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEE----ecCCC------CHHHhhhcccccccCC-
Confidence 778899999999999999999999999999999999999999999998 66554 7889999999999987
Q ss_pred CCceEEEEEcCCCcHHHHHH
Q 000129 877 DSYGEGIIITGHSELRYYLS 896 (2114)
Q Consensus 877 d~~G~~iil~~~~e~~~~~~ 896 (2114)
..|.++++++..+...+..
T Consensus 334 -~~g~~~~~~~~~~~~~~~~ 352 (367)
T 1hv8_A 334 -KKGKAISIINRREYKKLRY 352 (367)
T ss_dssp -SCCEEEEEECTTSHHHHHH
T ss_pred -CccEEEEEEcHHHHHHHHH
Confidence 6799999999887765544
No 42
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=4.9e-37 Score=405.15 Aligned_cols=336 Identities=18% Similarity=0.250 Sum_probs=249.6
Q ss_pred ChhhHhhc---CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 483 PEWAQPAF---KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 483 p~~~~~~f---~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
++.+...+ .||.+|+|+|.++++.++.+. +++++||||+|||++|++|++.. +.++|||+|+
T Consensus 29 ~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~-d~lv~~pTGsGKTl~~~lpal~~--------------~g~~lVisP~ 93 (591)
T 2v1x_A 29 SGKVKDILQNVFKLEKFRPLQLETINVTMAGK-EVFLVMPTGGGKSLCYQLPALCS--------------DGFTLVICPL 93 (591)
T ss_dssp HHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTC-CEEEECCTTSCTTHHHHHHHHTS--------------SSEEEEECSC
T ss_pred CHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCC-CEEEEECCCChHHHHHHHHHHHc--------------CCcEEEEeCH
Confidence 34445444 489999999999999998875 49999999999999999999752 1289999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh---------hccceEEEcCHhHHH---HHHhccCCCcccccccEE
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---------IEETQIIVTTPEKWD---IITRKSGDRTYTQLVKLL 627 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---------~~~~~IiV~TPek~d---~l~r~~~~~~~l~~v~li 627 (2114)
++|+.|+++.+.+. |+++..++|+....... ...++|+|+|||++. .+.+.......+..+++|
T Consensus 94 ~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~i 169 (591)
T 2v1x_A 94 ISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRI 169 (591)
T ss_dssp HHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEE
Confidence 99999999999875 78899999987654321 347899999999862 232221112345678999
Q ss_pred EEeccccccc---CCchhHHHHHHHHHHHHhhccccccEEEEccccCCh--HHHHHHHhccccCceEeecCCccccccee
Q 000129 628 IIDEIHLLHD---NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY--EDVALFLRVNLEKGLFYFDNSYRPVPLSQ 702 (2114)
Q Consensus 628 IiDEaH~l~d---~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~--~dva~~l~~~~~~~~~~f~~~~rpv~l~~ 702 (2114)
||||||++.+ ++.+.+..+ ..+ ....+..++|+||||+++. .++..+++.. ....+...+....+..
T Consensus 170 ViDEAH~is~~g~dfr~~~~~l-~~l----~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~---~~~~~~~~~~r~nl~~ 241 (591)
T 2v1x_A 170 AVDEVHCCSQWGHDFRPDYKAL-GIL----KRQFPNASLIGLTATATNHVLTDAQKILCIE---KCFTFTASFNRPNLYY 241 (591)
T ss_dssp EEETGGGGSTTCTTCCGGGGGG-GHH----HHHCTTSEEEEEESSCCHHHHHHHHHHTTCC---SCEEEECCCCCTTEEE
T ss_pred EEECcccccccccccHHHHHHH-HHH----HHhCCCCcEEEEecCCCHHHHHHHHHHhCCC---CcEEEecCCCCcccEE
Confidence 9999999875 256665432 111 1234578999999998763 5667777643 2233444443334433
Q ss_pred EEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhc
Q 000129 703 QYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTD 782 (2114)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~ 782 (2114)
.+.... ....... ..+.+.+.....++++||||+|++.++.++..|...+
T Consensus 242 ~v~~~~-~~~~~~~----~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g------------------------- 291 (591)
T 2v1x_A 242 EVRQKP-SNTEDFI----EDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLG------------------------- 291 (591)
T ss_dssp EEEECC-SSHHHHH----HHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTT-------------------------
T ss_pred EEEeCC-CcHHHHH----HHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCC-------------------------
Confidence 322211 1111111 1222223223346799999999999999999987643
Q ss_pred ccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHH
Q 000129 783 MVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPL 862 (2114)
Q Consensus 783 ~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~ 862 (2114)
.++..+||+|+..+|..+++.|++|.++|||||+++++|||+|++++||+ |+++. |+.
T Consensus 292 ------------~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~----~~~p~------s~~ 349 (591)
T 2v1x_A 292 ------------IHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIH----HSMSK------SME 349 (591)
T ss_dssp ------------CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEE----SSCCS------SHH
T ss_pred ------------CCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEE----eCCCC------CHH
Confidence 34778899999999999999999999999999999999999999999999 77775 889
Q ss_pred HHHHhhcccCCCCCCCceEEEEEcCCCcHHHHHHhhc
Q 000129 863 DIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMN 899 (2114)
Q Consensus 863 ~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~~ll~ 899 (2114)
+|+||+|||||.| ..|.|+++++..+...+..++.
T Consensus 350 ~y~Qr~GRaGR~G--~~g~~i~l~~~~D~~~~~~~~~ 384 (591)
T 2v1x_A 350 NYYQESGRAGRDD--MKADCILYYGFGDIFRISSMVV 384 (591)
T ss_dssp HHHHHHTTSCTTS--SCEEEEEEECHHHHHHHHHHTT
T ss_pred HHHHHhccCCcCC--CCceEEEEEChHHHHHHHHHHh
Confidence 9999999999987 6799999999888777766654
No 43
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.7e-38 Score=413.79 Aligned_cols=403 Identities=13% Similarity=0.173 Sum_probs=218.1
Q ss_pred EEEEEeccCCCCCCeEEEEEeccccccCcccccccccccCCCCCCCCCCccCCCCCCcccccChhHHHHHhc-CCCCCCH
Q 000129 1266 SLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQ-GFKHFNP 1344 (2114)
Q Consensus 1266 ~~~f~vp~~~p~p~~y~v~~vSD~wl~~e~~~~is~~~l~lp~~~~~~t~lldl~p~~~~~L~~~~~~~l~~-gf~~~~~ 1344 (2114)
.....||+.+|+|......+.-..+...+..--....+..+-..++.+.++.++.|.. +.....+.+.. ||..|++
T Consensus 68 ~~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~---l~~~~~~~l~~~g~~~p~~ 144 (508)
T 3fho_A 68 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXK 144 (508)
T ss_dssp --------------------------------------------------------------------------CEECCC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---cccccccccccccccCcHH
Confidence 3456789989988755433322111111111001111233445555666666655543 33333344433 6889999
Q ss_pred HHHHHHHHHHcC-CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEE
Q 000129 1345 IQTQVFTVLYNT-DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVV 1423 (2114)
Q Consensus 1345 iQ~q~~~~il~~-~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~ 1423 (2114)
+|.++++.++++ +++++++||||||||++|++++++.+.....++ ++||++|+++|+.|+++++++ +....+..+.
T Consensus 145 ~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~--~vLvl~P~~~L~~Q~~~~~~~-~~~~~~~~~~ 221 (508)
T 3fho_A 145 IQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKP--QAICLAPSRELARQIMDVVTE-MGKYTEVKTA 221 (508)
T ss_dssp TTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSC--CEEEECSCHHHHHHHHHHHHH-HSTTSSCCEE
T ss_pred HHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCc--eEEEEECcHHHHHHHHHHHHH-hCCccCeeEE
Confidence 999999999987 578999999999999999999999887643333 899999999999999999995 5444455555
Q ss_pred EEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCce
Q 000129 1424 ELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIR 1503 (2114)
Q Consensus 1424 ~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~r 1503 (2114)
...++..... ....++|+|+||+++..++.+ ....+.++++||+||||.+.+..+ +..++..+...++.+.+
T Consensus 222 ~~~~~~~~~~-~~~~~~Ivv~T~~~l~~~l~~--~~~~~~~~~lIIiDEaH~~~~~~~-----~~~~~~~i~~~~~~~~~ 293 (508)
T 3fho_A 222 FGIKDSVPKG-AKIDAQIVIGTPGTVMDLMKR--RQLDARDIKVFVLDEADNMLDQQG-----LGDQSMRIKHLLPRNTQ 293 (508)
T ss_dssp C-----------CCCCSEEEECHHHHHHHHHT--TCSCCTTCCEEEECCHHHHTTC-------CHHHHHHHHHHSCTTCE
T ss_pred EEeCCccccc-ccCCCCEEEECHHHHHHHHHc--CCccccCCCEEEEechhhhcccCC-----cHHHHHHHHHhCCcCCe
Confidence 5555443322 223679999999998877665 233578899999999999876432 33444455555677899
Q ss_pred EEEEcccCCC-hhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeC
Q 000129 1504 IVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVP 1582 (2114)
Q Consensus 1504 iV~lSATl~n-~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~ 1582 (2114)
+|++|||+++ ...+..++......+........+..+...+...... .... .....+... ...+++||||+
T Consensus 294 ~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~k~-----~~l~~ll~~-~~~~~~LVF~~ 365 (508)
T 3fho_A 294 IVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSE--EHKY-----NVLVELYGL-LTIGQSIIFCK 365 (508)
T ss_dssp EEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--C--HHHH-----HHHHHHHC----CCCEEEBCS
T ss_pred EEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCch--HHHH-----HHHHHHHHh-cCCCcEEEEEC
Confidence 9999999987 4566666554432221111111111111111111100 0000 111122222 35689999999
Q ss_pred ChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceE
Q 000129 1583 SRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKV 1662 (2114)
Q Consensus 1583 sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~V 1662 (2114)
+++.|..++..|.. .+.++..+||+|+..+|..+++.|++|+++|
T Consensus 366 s~~~a~~l~~~L~~-----------------------------------~~~~v~~~hg~~~~~~R~~il~~f~~g~~~V 410 (508)
T 3fho_A 366 KKDTAEEIARRMTA-----------------------------------DGHTVACLTGNLEGAQRDAIMDSFRVGTSKV 410 (508)
T ss_dssp STTTTTHHHHHHTT-----------------------------------TTCCCCEEC-----CTTGGGTHHHHSSSCCC
T ss_pred CHHHHHHHHHHHHh-----------------------------------CCCcEEEEeCCCCHHHHHHHHHHHHCCCCeE
Confidence 99999988866621 2356899999999999999999999999999
Q ss_pred EEecCccccccCCCCcEEEEEeeeEecCCcCcCCC------CCHhHHHHhHcccCCCCCCCceEEEEEeecCc-HHHHHH
Q 000129 1663 CVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTD------YPVTDLLQMMGHASRPLLDNSGKCVILCHAPR-KEYYKK 1735 (2114)
Q Consensus 1663 LVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~------~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~-~~~~~~ 1735 (2114)
||||+++++|+|+|++.+|| +++.| .+..+|+||+|||||. +..|.|++++.+.+ ...++.
T Consensus 411 LVaT~~l~~GiDip~v~~VI----------~~~~p~~~~~~~s~~~~~Qr~GRagR~--g~~g~~i~l~~~~~~~~~~~~ 478 (508)
T 3fho_A 411 LVTTNVIARGIDVSQVNLVV----------NYDMPLDQAGRPDPQTYLHRIGRTGRF--GRVGVSINFVHDKKSWEEMNA 478 (508)
T ss_dssp CEECC-----CCCTTCCEEE----------C----CC-----CTHHHHHTTSCCC-------CEEEEEECTTTSSSSHHH
T ss_pred EEeCChhhcCCCccCCCEEE----------EECCCCcccCCCCHHHHHHHhhhcCCC--CCCcEEEEEEeChHHHHHHHH
Confidence 99999999999999999999 66666 7899999999999997 57899999998543 333343
Q ss_pred HH
Q 000129 1736 FL 1737 (2114)
Q Consensus 1736 ~l 1737 (2114)
+.
T Consensus 479 i~ 480 (508)
T 3fho_A 479 IQ 480 (508)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 44
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.7e-36 Score=379.22 Aligned_cols=339 Identities=21% Similarity=0.337 Sum_probs=258.5
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q 1405 (2114)
|.......+.. ||..|+|+|.++++.+++++.+++++||||||||++|.++++..+.. .++ .+++|++|+++|+.|
T Consensus 13 l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~-~~~--~~~lil~P~~~L~~q 89 (367)
T 1hv8_A 13 LSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE-NNG--IEAIILTPTRELAIQ 89 (367)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS-SSS--CCEEEECSCHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc-cCC--CcEEEEcCCHHHHHH
Confidence 44444555544 79999999999999999987889999999999999999999987765 223 389999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcccc--hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCch
Q 000129 1406 RYRDWEIKFGQGLGMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483 (2114)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~l~G~~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~ 1483 (2114)
+++.+++.++. .++++..++|+.... ...+..++|+|+||+++...+.+ ....+.+++++|+||||.+.+..
T Consensus 90 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~--~~~~~~~~~~iIiDEah~~~~~~--- 163 (367)
T 1hv8_A 90 VADEIESLKGN-KNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINR--GTLNLKNVKYFILDEADEMLNMG--- 163 (367)
T ss_dssp HHHHHHHHHCS-SCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHT--TCSCTTSCCEEEEETHHHHHTTT---
T ss_pred HHHHHHHHhCC-CCceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHc--CCcccccCCEEEEeCchHhhhhc---
Confidence 99999965543 478888888877643 34455789999999998877765 23457889999999999987654
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEEcccCCCh--hHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCH
Q 000129 1484 LEVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTK 1561 (2114)
Q Consensus 1484 le~i~srl~~i~~~~~~~~riV~lSATl~n~--~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~ 1561 (2114)
+...+..+....+...+++++|||+++. ..+..+++... ... ......+...........
T Consensus 164 ---~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~---------- 225 (367)
T 1hv8_A 164 ---FIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYS--FIK---AKINANIEQSYVEVNENE---------- 225 (367)
T ss_dssp ---THHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEE--EEE---CCSSSSSEEEEEECCGGG----------
T ss_pred ---hHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCe--EEE---ecCCCCceEEEEEeChHH----------
Confidence 3444555555567789999999999764 23444554321 111 111123333322221111
Q ss_pred HHHHHHHHHh-cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeec
Q 000129 1562 PTFTAIVQHA-KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLH 1640 (2114)
Q Consensus 1562 ~~~~~i~~~l-~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H 1640 (2114)
....+...+ ..++++||||++++.|..++..|.. .+.++..+|
T Consensus 226 -~~~~l~~~l~~~~~~~lvf~~~~~~~~~l~~~L~~-----------------------------------~~~~~~~~~ 269 (367)
T 1hv8_A 226 -RFEALCRLLKNKEFYGLVFCKTKRDTKELASMLRD-----------------------------------IGFKAGAIH 269 (367)
T ss_dssp -HHHHHHHHHCSTTCCEEEECSSHHHHHHHHHHHHH-----------------------------------TTCCEEEEC
T ss_pred -HHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHh-----------------------------------cCCCeEEee
Confidence 112222222 4567899999999999998876632 245689999
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceE
Q 000129 1641 EGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGK 1720 (2114)
Q Consensus 1641 ~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~ 1720 (2114)
|+++..+|..+++.|++|+.+|||||+++++|+|+|++.+|| +++.|.+..+|+||+|||||. +..|.
T Consensus 270 ~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi----------~~~~~~s~~~~~Q~~GR~~R~--g~~g~ 337 (367)
T 1hv8_A 270 GDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVI----------NYHLPQNPESYMHRIGRTGRA--GKKGK 337 (367)
T ss_dssp SSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEE----------ESSCCSCHHHHHHHSTTTCCS--SSCCE
T ss_pred CCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEE----------EecCCCCHHHhhhcccccccC--CCccE
Confidence 999999999999999999999999999999999999999999 788899999999999999998 57899
Q ss_pred EEEEeecCcHHHHHHHHHhc
Q 000129 1721 CVILCHAPRKEYYKKFLRLT 1740 (2114)
Q Consensus 1721 ~iil~~~~~~~~~~~~lRl~ 1740 (2114)
|++++.+.+...++.+.+..
T Consensus 338 ~~~~~~~~~~~~~~~i~~~~ 357 (367)
T 1hv8_A 338 AISIINRREYKKLRYIERAM 357 (367)
T ss_dssp EEEEECTTSHHHHHHHHHHH
T ss_pred EEEEEcHHHHHHHHHHHHHh
Confidence 99999998887777766543
No 45
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.8e-35 Score=375.31 Aligned_cols=341 Identities=15% Similarity=0.182 Sum_probs=252.5
Q ss_pred ChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHH
Q 000129 1328 RNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKER 1406 (2114)
Q Consensus 1328 ~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~ 1406 (2114)
.....+.+.. ||..|+|+|.++++.++.+ .+++++||||+|||++|++|++..+...... .++||++|+++|+.|+
T Consensus 16 ~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~--~~~lil~P~~~L~~q~ 92 (391)
T 1xti_A 16 KPELLRAIVDCGFEHPSEVQHECIPQAILG-MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQ--VSVLVMCHTRELAFQI 92 (391)
T ss_dssp CHHHHHHHHHHSCCSCCHHHHHHHHHHTTT-CCEEEECSSCSSHHHHHHHHHHHHCCCCTTC--CCEEEECSCHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHhcC-CcEEEECCCCCcHHHHHHHHHHHhhcccCCC--eeEEEECCCHHHHHHH
Confidence 3344455544 7999999999999999885 5599999999999999999999887653223 3899999999999999
Q ss_pred HHHHHHHhcCC-CCcEEEEEcCCcccch--hhc--cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCC
Q 000129 1407 YRDWEIKFGQG-LGMRVVELTGETAMDL--KLL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2114)
Q Consensus 1407 ~~~~~~~f~~~-~g~~v~~l~G~~~~~~--~~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g 1481 (2114)
++.+++ +... .++++..++|+..... ..+ ..++|+|+||+++..++++. ...+.++++||+||||++.++.
T Consensus 93 ~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~--~~~~~~~~~vViDEaH~~~~~~- 168 (391)
T 1xti_A 93 SKEYER-FSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK--SLNLKHIKHFILDECDKMLEQL- 168 (391)
T ss_dssp HHHHHH-HTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT--SSCCTTCSEEEECSHHHHTSSH-
T ss_pred HHHHHH-HHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcC--CccccccCEEEEeCHHHHhhcc-
Confidence 999984 5443 3789999999876442 222 23599999999998887763 3457899999999999987542
Q ss_pred chHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hH-HHHHhcCCCCceeecCCCC--CccCcEEEEecccccchHHHHH
Q 000129 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KD-LGEWIGATSHGLFNFPPGV--RPVPLEIHIQGVDITNFEARMQ 1557 (2114)
Q Consensus 1482 ~~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~d-la~wl~~~~~~~~~f~~~~--rpv~l~~~~~~~~~~~~~~~~~ 1557 (2114)
.+...+..+....+...+++++|||+++. .. +..+++... .+...... ....+...+.........
T Consensus 169 ----~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 238 (391)
T 1xti_A 169 ----DMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPM--EIFVDDETKLTLHGLQQYYVKLKDNEKN---- 238 (391)
T ss_dssp ----HHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCE--EEECCCCCCCCCTTCEEEEEECCGGGHH----
T ss_pred ----chHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCe--EEEecCccccCcccceEEEEEcCchhHH----
Confidence 13344455555566789999999999874 23 344444321 12222221 222333333222211111
Q ss_pred hcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceE
Q 000129 1558 AMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637 (2114)
Q Consensus 1558 ~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~ 1637 (2114)
.....+... ..++++||||++++.|..++..|.. .+..+.
T Consensus 239 ----~~l~~~l~~-~~~~~~lvf~~~~~~~~~l~~~L~~-----------------------------------~~~~~~ 278 (391)
T 1xti_A 239 ----RKLFDLLDV-LEFNQVVIFVKSVQRCIALAQLLVE-----------------------------------QNFPAI 278 (391)
T ss_dssp ----HHHHHHHHH-SCCSEEEEECSCHHHHHHHHHHHHH-----------------------------------TTCCEE
T ss_pred ----HHHHHHHHh-cCCCcEEEEeCcHHHHHHHHHHHHh-----------------------------------CCCcEE
Confidence 112222333 3678899999999999999877632 134588
Q ss_pred eecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCC
Q 000129 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDN 1717 (2114)
Q Consensus 1638 ~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~ 1717 (2114)
.+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++.+|| +++.|.+..+|+||+|||||. +.
T Consensus 279 ~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi----------~~~~p~s~~~~~Qr~GR~~R~--g~ 346 (391)
T 1xti_A 279 AIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF----------NYDMPEDSDTYLHRVARAGRF--GT 346 (391)
T ss_dssp EECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEE----------ESSCCSSHHHHHHHHCBCSSS--CC
T ss_pred EEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEE----------EeCCCCCHHHHHHhcccccCC--CC
Confidence 999999999999999999999999999999999999999999999 788999999999999999998 57
Q ss_pred ceEEEEEeecCcHH-HHHHHH
Q 000129 1718 SGKCVILCHAPRKE-YYKKFL 1737 (2114)
Q Consensus 1718 ~G~~iil~~~~~~~-~~~~~l 1737 (2114)
.|.|++++.+.+.. +++.+.
T Consensus 347 ~g~~~~~~~~~~~~~~~~~~~ 367 (391)
T 1xti_A 347 KGLAITFVSDENDAKILNDVQ 367 (391)
T ss_dssp CCEEEEEECSHHHHHHHHHHH
T ss_pred ceEEEEEEcccchHHHHHHHH
Confidence 99999999876543 344443
No 46
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=4.2e-36 Score=372.93 Aligned_cols=324 Identities=21% Similarity=0.311 Sum_probs=242.0
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
||+++.+.+ .||.+|+|+|.++++.++.+ ++++++||||+|||++|++++++. +.+++|++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~-~~~lv~~~TGsGKT~~~~~~~~~~--------------~~~~liv~P~ 65 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQG-KNVVVRAKTGSGKTAAYAIPILEL--------------GMKSLVVTPT 65 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHH--------------TCCEEEECSS
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CCEEEEcCCCCcHHHHHHHHHHhh--------------cCCEEEEeCC
Confidence 456666666 68999999999999988866 569999999999999999998864 1269999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCccChh--hhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d 637 (2114)
++|+.|+++.+.++....++++..++|+...... ....++|+|+||+++..+.... ...+.++++||+||||++.+
T Consensus 66 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~--~~~~~~~~~iViDEah~~~~ 143 (337)
T 2z0m_A 66 RELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKG--VIDLSSFEIVIIDEADLMFE 143 (337)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTT--SCCGGGCSEEEEESHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcC--CcchhhCcEEEEEChHHhhc
Confidence 9999999999999888888999999998765443 2456899999999984443332 23567899999999999876
Q ss_pred -CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHH
Q 000129 638 -NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRF 716 (2114)
Q Consensus 638 -~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~ 716 (2114)
.+...+..++. ......+++++|||+|+ .+..++........ .......+..+...++.+..... ..
T Consensus 144 ~~~~~~~~~~~~-------~~~~~~~~~~~SAT~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~- 211 (337)
T 2z0m_A 144 MGFIDDIKIILA-------QTSNRKITGLFSATIPE--EIRKVVKDFITNYE-EIEACIGLANVEHKFVHVKDDWR-SK- 211 (337)
T ss_dssp TTCHHHHHHHHH-------HCTTCSEEEEEESCCCH--HHHHHHHHHSCSCE-EEECSGGGGGEEEEEEECSSSSH-HH-
T ss_pred cccHHHHHHHHh-------hCCcccEEEEEeCcCCH--HHHHHHHHhcCCce-eeecccccCCceEEEEEeChHHH-HH-
Confidence 45444444433 24567788999999874 23333322211111 12222333344444444333211 11
Q ss_pred HHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCc
Q 000129 717 QLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYG 796 (2114)
Q Consensus 717 ~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~g 796 (2114)
.. ......++++||||++++.++.++..|. .
T Consensus 212 -------~~-~~~~~~~~~~lvf~~~~~~~~~l~~~l~-----------------------------------------~ 242 (337)
T 2z0m_A 212 -------VQ-ALRENKDKGVIVFVRTRNRVAKLVRLFD-----------------------------------------N 242 (337)
T ss_dssp -------HH-HHHTCCCSSEEEECSCHHHHHHHHTTCT-----------------------------------------T
T ss_pred -------HH-HHHhCCCCcEEEEEcCHHHHHHHHHHhh-----------------------------------------h
Confidence 11 1223447799999999999988765442 2
Q ss_pred eEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCC
Q 000129 797 FAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY 876 (2114)
Q Consensus 797 v~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~ 876 (2114)
+..+||+|+..+|..+++.|++|.++|||||+++++|+|+|++++||+ |+++. |..+|+||+|||||.|
T Consensus 243 ~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~----~~~~~------s~~~~~Q~~GR~gR~g- 311 (337)
T 2z0m_A 243 AIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVIN----FDAPQ------DLRTYIHRIGRTGRMG- 311 (337)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEE----SSCCS------SHHHHHHHHTTBCGGG-
T ss_pred hhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEE----ecCCC------CHHHhhHhcCccccCC-
Confidence 567899999999999999999999999999999999999999999998 66664 7889999999999987
Q ss_pred CCceEEEEEcCCCcHHHHHH
Q 000129 877 DSYGEGIIITGHSELRYYLS 896 (2114)
Q Consensus 877 d~~G~~iil~~~~e~~~~~~ 896 (2114)
..|.+++++. .+......
T Consensus 312 -~~g~~~~~~~-~~~~~~~~ 329 (337)
T 2z0m_A 312 -RKGEAITFIL-NEYWLEKE 329 (337)
T ss_dssp -CCEEEEEEES-SCHHHHHH
T ss_pred -CCceEEEEEe-CcHHHHHH
Confidence 6799999988 66555544
No 47
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=4.6e-36 Score=406.37 Aligned_cols=455 Identities=16% Similarity=0.157 Sum_probs=304.9
Q ss_pred cChhHHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHH
Q 000129 1327 LRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKER 1406 (2114)
Q Consensus 1327 L~~~~~~~l~~gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~ 1406 (2114)
+.....+.+......|+++|.++|..++.++++++++||||||||++..+.++..... .+.+.+++|++|+++|+.|+
T Consensus 79 l~~~~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~--~~~g~~ilvl~P~r~La~q~ 156 (773)
T 2xau_A 79 FTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMP--HLENTQVACTQPRRVAAMSV 156 (773)
T ss_dssp CCHHHHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCG--GGGTCEEEEEESCHHHHHHH
T ss_pred CCHHHHHHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccc--cCCCceEEecCchHHHHHHH
Confidence 3433333333223689999999999999988899999999999999433222222111 11123899999999999999
Q ss_pred HHHHHHHhcCCCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHH
Q 000129 1407 YRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEV 1486 (2114)
Q Consensus 1407 ~~~~~~~f~~~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~ 1486 (2114)
++++...++...+..++.-.. .+.......+|+++||+++...+.. ...+.++++||+||+|. ++...+.
T Consensus 157 ~~~l~~~~~~~v~~~vG~~i~---~~~~~~~~~~I~v~T~G~l~r~l~~---~~~l~~~~~lIlDEah~----R~ld~d~ 226 (773)
T 2xau_A 157 AQRVAEEMDVKLGEEVGYSIR---FENKTSNKTILKYMTDGMLLREAME---DHDLSRYSCIILDEAHE----RTLATDI 226 (773)
T ss_dssp HHHHHHHTTCCBTTTEEEEET---TEEECCTTCSEEEEEHHHHHHHHHH---STTCTTEEEEEECSGGG----CCHHHHH
T ss_pred HHHHHHHhCCchhheecceec---cccccCCCCCEEEECHHHHHHHHhh---CccccCCCEEEecCccc----cccchHH
Confidence 998886665433444432211 1112224669999999998765543 45789999999999995 2222333
Q ss_pred HHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHH
Q 000129 1487 IVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTA 1566 (2114)
Q Consensus 1487 i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 1566 (2114)
++..++.+... ..+.++|++|||+ +.+++++|++... ++... .+..|+++++.......+.... ... ...
T Consensus 227 ~~~~l~~l~~~-~~~~~iIl~SAT~-~~~~l~~~~~~~~--vi~v~--gr~~pv~~~~~~~~~~~~~~~~---l~~-l~~ 296 (773)
T 2xau_A 227 LMGLLKQVVKR-RPDLKIIIMSATL-DAEKFQRYFNDAP--LLAVP--GRTYPVELYYTPEFQRDYLDSA---IRT-VLQ 296 (773)
T ss_dssp HHHHHHHHHHH-CTTCEEEEEESCS-CCHHHHHHTTSCC--EEECC--CCCCCEEEECCSSCCSCHHHHH---HHH-HHH
T ss_pred HHHHHHHHHHh-CCCceEEEEeccc-cHHHHHHHhcCCC--ccccc--CcccceEEEEecCCchhHHHHH---HHH-HHH
Confidence 44555555433 3578999999999 6789999997543 34333 3455666655443333222111 011 111
Q ss_pred HHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHH
Q 000129 1567 IVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKT 1646 (2114)
Q Consensus 1567 i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~ 1646 (2114)
+... ...+++||||++++.|+.++..|...+.. +. ......+..|..+||+|+++
T Consensus 297 ~~~~-~~~g~iLVF~~~~~~i~~l~~~L~~~~~~----------------------l~--~~~~~~~~~v~~lhg~l~~~ 351 (773)
T 2xau_A 297 IHAT-EEAGDILLFLTGEDEIEDAVRKISLEGDQ----------------------LV--REEGCGPLSVYPLYGSLPPH 351 (773)
T ss_dssp HHHH-SCSCEEEEECSCHHHHHHHHHHHHHHHHH----------------------HH--HHHCCCCEEEEEECTTCCHH
T ss_pred HHHh-cCCCCEEEECCCHHHHHHHHHHHHHHHHh----------------------hc--ccccCCCeEEEEeCCCCCHH
Confidence 1112 35789999999999999999887542210 00 00001234589999999999
Q ss_pred HHHHHHHHHh-----cCCceEEEecCccccccCCCCcEEEEE----eeeEecCCcCcCC----CCCHhHHHHhHcccCCC
Q 000129 1647 DQEVVSALFE-----AGKIKVCVMSSSMCWGVPLTAHLVVVM----GTQYYDGQENAHT----DYPVTDLLQMMGHASRP 1713 (2114)
Q Consensus 1647 dR~~v~~~F~-----~g~i~VLVaT~~la~Gvdip~~~vVI~----gt~~yd~~~~~~~----~~s~~~~lQr~GRAGR~ 1713 (2114)
+|..+++.|+ +|.++|||||+++++|||+|++.+||. ....|+++.+... |.|..+|+||+|||||.
T Consensus 352 eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~ 431 (773)
T 2xau_A 352 QQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT 431 (773)
T ss_dssp HHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS
T ss_pred HHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC
Confidence 9999999999 999999999999999999999999994 5567888766543 89999999999999995
Q ss_pred CCCCceEEEEEeecCcHHHHHHHHHhccCCCCc--------------cccCCCc-cchHHHHHHHHHHHHHHHHHCCCce
Q 000129 1714 LLDNSGKCVILCHAPRKEYYKKFLRLTQNPNYY--------------NLQGVSH-RHLSDHLSELVENTISDLEASKCII 1778 (2114)
Q Consensus 1714 ~~~~~G~~iil~~~~~~~~~~~~lRl~~nP~~y--------------~l~~~s~-~~l~~~lselve~~l~~L~~~~~I~ 1778 (2114)
..|.|++++.+.+. .. .+.-...|... ++.++.. ..++....+.+..++..|...|+|+
T Consensus 432 ---~~G~~~~l~~~~~~--~~-~l~~~~~pEi~r~~L~~~~L~l~~~gi~~~~~f~~~~~p~~~~i~~a~~~L~~lgald 505 (773)
T 2xau_A 432 ---RPGKCFRLYTEEAF--QK-ELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLD 505 (773)
T ss_dssp ---SSEEEEESSCHHHH--HH-TSCSSCCCGGGGSCCHHHHHHHHHTTCCCGGGCCCSSCCCHHHHHHHHHHHHHTTSBC
T ss_pred ---CCCEEEEEecHHHh--cc-cccccCCCccccCcHHHHHHHHHHcCCCChhhccccCCCcHHHHHHHHHHHHHcCCcc
Confidence 79999999975432 11 11111112111 1111100 0111123578899999999999994
Q ss_pred ecCCCccccCcccchhhhcccCHhHHHHHHhhcCCCCChhhHHHHHhcCccccCCCCCcchH
Q 000129 1779 IEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEE 1840 (2114)
Q Consensus 1779 ~~~~~~~~~t~lG~i~s~y~i~~~T~~~f~~sl~~~~~~~~iL~ils~a~Ef~~i~vR~~E~ 1840 (2114)
.+ -.+|++|+++|.+|++|.++++++.+....+ ...++.|+|.-+ +.++.+|..+.
T Consensus 506 ~~----~~lT~lG~~~a~~pl~p~~~~~l~~~~~~~c-~~~~l~i~a~ls-~~~~f~~~~~~ 561 (773)
T 2xau_A 506 DE----GNLTPLGRLASQFPLDPMLAVMLIGSFEFQC-SQEILTIVAMLS-VPNVFIRPTKD 561 (773)
T ss_dssp TT----SCBCHHHHHHTTSSSCHHHHHHHHHGGGGTC-HHHHHHHHHHHT-SCCCBCCCTTC
T ss_pred cC----CCcChhhhhhccccCCHHHHHHHHhhcccCc-hhHHHHHHHhcc-cCCcccCChHH
Confidence 22 3589999999999999999999998665443 566776666544 35555665443
No 48
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=3.9e-36 Score=396.58 Aligned_cols=328 Identities=18% Similarity=0.287 Sum_probs=246.4
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHH
Q 000129 1332 YEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2114)
Q Consensus 1332 ~~~l~~gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~ 1411 (2114)
+...| ||..|+|+|.++++.++++++ +++.+|||+|||+||++|++. ..+ ++|||+|+++|+.|+++.++
T Consensus 36 L~~~f-g~~~~rp~Q~~~i~~il~g~d-~lv~~pTGsGKTl~~~lpal~------~~g--~~lVisP~~~L~~q~~~~l~ 105 (591)
T 2v1x_A 36 LQNVF-KLEKFRPLQLETINVTMAGKE-VFLVMPTGGGKSLCYQLPALC------SDG--FTLVICPLISLMEDQLMVLK 105 (591)
T ss_dssp HHHTS-CCCSCCTTHHHHHHHHHTTCC-EEEECCTTSCTTHHHHHHHHT------SSS--EEEEECSCHHHHHHHHHHHH
T ss_pred HHHHh-CCCCCCHHHHHHHHHHHcCCC-EEEEECCCChHHHHHHHHHHH------cCC--cEEEEeCHHHHHHHHHHHHH
Confidence 44444 599999999999999998655 999999999999999999973 244 99999999999999999998
Q ss_pred HHhcCCCCcEEEEEcCCcccchh---------hccCCcEEEEChhhHH---HHHhhhcccccccceeEEEecccccccCC
Q 000129 1412 IKFGQGLGMRVVELTGETAMDLK---------LLEKGQIIISTPEKWD---ALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479 (2114)
Q Consensus 1412 ~~f~~~~g~~v~~l~G~~~~~~~---------~l~~~~IIV~TPe~l~---~l~r~~~~~~~l~~v~liIiDEaH~l~~~ 1479 (2114)
+ + |+++..++|+...... .....+|+|+|||++. .++..+.....+.++++|||||||++.++
T Consensus 106 ~-~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~ 180 (591)
T 2v1x_A 106 Q-L----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQW 180 (591)
T ss_dssp H-H----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTT
T ss_pred h-c----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECccccccc
Confidence 4 4 6788899998765421 1245699999999884 34443333345678999999999999865
Q ss_pred C---CchHHHHHHHHHHHHhhcCCCceEEEEcccCCCh--hHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHH
Q 000129 1480 G---GPVLEVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEA 1554 (2114)
Q Consensus 1480 ~---g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~--~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~ 1554 (2114)
+ .+.+.. +..+... .++.++|+||||+++. .++..|++......+. .......+...+...... .
T Consensus 181 g~dfr~~~~~----l~~l~~~-~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~--~~~~r~nl~~~v~~~~~~-~-- 250 (591)
T 2v1x_A 181 GHDFRPDYKA----LGILKRQ-FPNASLIGLTATATNHVLTDAQKILCIEKCFTFT--ASFNRPNLYYEVRQKPSN-T-- 250 (591)
T ss_dssp CTTCCGGGGG----GGHHHHH-CTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEE--CCCCCTTEEEEEEECCSS-H--
T ss_pred ccccHHHHHH----HHHHHHh-CCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEe--cCCCCcccEEEEEeCCCc-H--
Confidence 3 333322 2222222 3478999999999874 5788888876543333 222222333333322110 0
Q ss_pred HHHhcCHHHHHHHHHHh---cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHH
Q 000129 1555 RMQAMTKPTFTAIVQHA---KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKAT 1631 (2114)
Q Consensus 1555 ~~~~~~~~~~~~i~~~l---~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~ 1631 (2114)
......+...+ ..++++||||+|++.|+.++..|..
T Consensus 251 ------~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~----------------------------------- 289 (591)
T 2v1x_A 251 ------EDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQN----------------------------------- 289 (591)
T ss_dssp ------HHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHH-----------------------------------
T ss_pred ------HHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHH-----------------------------------
Confidence 11122233332 2567899999999999999977632
Q ss_pred hccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccC
Q 000129 1632 LRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHAS 1711 (2114)
Q Consensus 1632 l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAG 1711 (2114)
.+.++..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++|| +++.|.++.+|+||+||||
T Consensus 290 ~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI----------~~~~p~s~~~y~Qr~GRaG 359 (591)
T 2v1x_A 290 LGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVI----------HHSMSKSMENYYQESGRAG 359 (591)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEE----------ESSCCSSHHHHHHHHTTSC
T ss_pred CCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEE----------EeCCCCCHHHHHHHhccCC
Confidence 245689999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred CCCCCCceEEEEEeecCcHHHHHHHH
Q 000129 1712 RPLLDNSGKCVILCHAPRKEYYKKFL 1737 (2114)
Q Consensus 1712 R~~~~~~G~~iil~~~~~~~~~~~~l 1737 (2114)
|. +..|.|++++...+...+..++
T Consensus 360 R~--G~~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 360 RD--DMKADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp TT--SSCEEEEEEECHHHHHHHHHHT
T ss_pred cC--CCCceEEEEEChHHHHHHHHHH
Confidence 97 6799999999876655544443
No 49
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-37 Score=405.97 Aligned_cols=338 Identities=19% Similarity=0.263 Sum_probs=213.2
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA 557 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~ia 557 (2114)
.+++++...+ .|+..|+++|.++++.++.+ +++++++||||||||++|++++++.+.... .+.++||++
T Consensus 125 ~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~--------~~~~vLvl~ 196 (508)
T 3fho_A 125 XXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASV--------PKPQAICLA 196 (508)
T ss_dssp --------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTC--------CSCCEEEEC
T ss_pred ccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCC--------CCceEEEEE
Confidence 3445555554 57889999999999999987 578999999999999999999999875532 245899999
Q ss_pred ccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHH-HHHHhccCCCcccccccEEEEecccccc
Q 000129 558 PMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2114)
Q Consensus 558 P~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (2114)
|+++|+.|+++.+++++...++.+....|+..... ....++|+|+||+++ +.+.+.. ..+.++++|||||||++.
T Consensus 197 P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Ivv~T~~~l~~~l~~~~---~~~~~~~lIIiDEaH~~~ 272 (508)
T 3fho_A 197 PSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG-AKIDAQIVIGTPGTVMDLMKRRQ---LDARDIKVFVLDEADNML 272 (508)
T ss_dssp SCHHHHHHHHHHHHHHSTTSSCCEEC-----------CCCCSEEEECHHHHHHHHHTTC---SCCTTCCEEEECCHHHHT
T ss_pred CcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc-ccCCCCEEEECHHHHHHHHHcCC---ccccCCCEEEEechhhhc
Confidence 99999999999999988777777666666543322 234789999999997 4444433 346789999999999987
Q ss_pred cC--CchhHHHHHHHHHHHHhhccccccEEEEccccCC-hHHHHHHHhccccCceEeec-CCcccccceeEEEeeccCch
Q 000129 637 DN--RGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFD-NSYRPVPLSQQYIGIQVKKP 712 (2114)
Q Consensus 637 d~--rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn-~~dva~~l~~~~~~~~~~f~-~~~rpv~l~~~~~~~~~~~~ 712 (2114)
+. ++..+..+ ........|+|++|||+++ .+.+..++...+ ...... ....+..+.+.+......
T Consensus 273 ~~~~~~~~~~~i-------~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~-- 341 (508)
T 3fho_A 273 DQQGLGDQSMRI-------KHLLPRNTQIVLFSATFSERVEKYAERFAPNA--NEIRLKTEELSVEGIKQLYMDCQSE-- 341 (508)
T ss_dssp TC--CHHHHHHH-------HHHSCTTCEEEEEESCCSTHHHHHHHHHSTTC--EEECCCCCC----CCCCEEEEC--C--
T ss_pred ccCCcHHHHHHH-------HHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCC--eEEEeccccCCcccceEEEEECCch--
Confidence 63 32222222 2234568899999999986 344444443221 111111 122222233333322211
Q ss_pred hHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhh
Q 000129 713 LQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDL 792 (2114)
Q Consensus 713 ~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~l 792 (2114)
..+...+. .+.....++++||||++++.+..++..|...
T Consensus 342 ~~k~~~l~-----~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~------------------------------------ 380 (508)
T 3fho_A 342 EHKYNVLV-----ELYGLLTIGQSIIFCKKKDTAEEIARRMTAD------------------------------------ 380 (508)
T ss_dssp HHHHHHHH-----HHHC---CCCEEEBCSSTTTTTHHHHHHTTT------------------------------------
T ss_pred HHHHHHHH-----HHHHhcCCCcEEEEECCHHHHHHHHHHHHhC------------------------------------
Confidence 11222111 1222334689999999999999999887542
Q ss_pred ccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccC
Q 000129 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (2114)
Q Consensus 793 l~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAG 872 (2114)
..++..|||+|+..+|..+++.|++|.++|||||+++++|||+|++++||+ |+++..+..+.|..+|+||+||||
T Consensus 381 -~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~----~~~p~~~~~~~s~~~~~Qr~GRag 455 (508)
T 3fho_A 381 -GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVN----YDMPLDQAGRPDPQTYLHRIGRTG 455 (508)
T ss_dssp -TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC--------CC-----CTHHHHHTTSCCC
T ss_pred -CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEE----ECCCCcccCCCCHHHHHHHhhhcC
Confidence 235788999999999999999999999999999999999999999999998 555543334468899999999999
Q ss_pred CCCCCCceEEEEEcCCC
Q 000129 873 RPQYDSYGEGIIITGHS 889 (2114)
Q Consensus 873 R~g~d~~G~~iil~~~~ 889 (2114)
|.| ..|.|++++...
T Consensus 456 R~g--~~g~~i~l~~~~ 470 (508)
T 3fho_A 456 RFG--RVGVSINFVHDK 470 (508)
T ss_dssp -------CEEEEEECTT
T ss_pred CCC--CCcEEEEEEeCh
Confidence 987 679999988753
No 50
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=2.1e-37 Score=393.56 Aligned_cols=339 Identities=20% Similarity=0.320 Sum_probs=142.9
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
.|++++...+ .||.+|+|+|.++++.++.+. +++++||||+|||++|++|+++.+.... .+.++||++|
T Consensus 27 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~-~~lv~~~TGsGKT~~~~~~~~~~l~~~~--------~~~~~lil~P 97 (394)
T 1fuu_A 27 ELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGH-DVLAQAQSGTGKTGTFSIAALQRIDTSV--------KAPQALMLAP 97 (394)
T ss_dssp CCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTC-CEEECCCSSHHHHHHHHHHHHHHCCTTC--------CSCCEEEECS
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCC-CEEEECCCCChHHHHHHHHHHHHhhccC--------CCCCEEEEcC
Confidence 4677777776 589999999999999988874 5999999999999999999998875431 2458999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChh--hhccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccccc
Q 000129 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l 635 (2114)
+++|+.|+++.+.+++...++++..++|+...... ....++|+|+||+++ +.+.+.. ..+.++++||+||||++
T Consensus 98 ~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~---~~~~~~~~vIiDEah~~ 174 (394)
T 1fuu_A 98 TRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRR---FRTDKIKMFILDEADEM 174 (394)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTS---SCCTTCCEEEEETHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCC---cchhhCcEEEEEChHHh
Confidence 99999999999999888889999999998775443 234789999999997 4444432 45678999999999998
Q ss_pred cc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEee-cC-CcccccceeEEEeeccCch
Q 000129 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYF-DN-SYRPVPLSQQYIGIQVKKP 712 (2114)
Q Consensus 636 ~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f-~~-~~rpv~l~~~~~~~~~~~~ 712 (2114)
.+ .++..+..++. ......+++++|||+++ ++..+.......+.... .. ...+..+.+.+......
T Consensus 175 ~~~~~~~~~~~~~~-------~~~~~~~~i~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 243 (394)
T 1fuu_A 175 LSSGFKEQIYQIFT-------LLPPTTQVVLLSATMPN--DVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEE-- 243 (394)
T ss_dssp HHTTCHHHHHHHHH-------HSCTTCEEEEECSSCCH--HHHHHHHHHCCSCEEEEECC--------------------
T ss_pred hCCCcHHHHHHHHH-------hCCCCceEEEEEEecCH--HHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCch--
Confidence 65 45554444433 24567899999999875 23333222111222111 11 11111222222211111
Q ss_pred hHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhh
Q 000129 713 LQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDL 792 (2114)
Q Consensus 713 ~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~l 792 (2114)
..+...+. .+.+....+++||||++++.+..++..|...+
T Consensus 244 ~~~~~~l~-----~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~----------------------------------- 283 (394)
T 1fuu_A 244 EYKYECLT-----DLYDSISVTQAVIFCNTRRKVEELTTKLRNDK----------------------------------- 283 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHH-----HHHhcCCCCcEEEEECCHHHHHHHHHHHHHcC-----------------------------------
Confidence 11111111 12223346799999999999999998886532
Q ss_pred ccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccC
Q 000129 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (2114)
Q Consensus 793 l~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAG 872 (2114)
.++..+||+|+..+|..+++.|++|.++|||||+++++|+|+|++++||+ |+++. +..+|+||+||||
T Consensus 284 --~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~----~~~p~------s~~~~~Qr~GR~~ 351 (394)
T 1fuu_A 284 --FTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVIN----YDLPA------NKENYIHRIGRGG 351 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --CeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEE----eCCCC------CHHHHHHHcCccc
Confidence 23567899999999999999999999999999999999999999999998 55443 5668999999999
Q ss_pred CCCCCCceEEEEEcCCCcHHHHHH
Q 000129 873 RPQYDSYGEGIIITGHSELRYYLS 896 (2114)
Q Consensus 873 R~g~d~~G~~iil~~~~e~~~~~~ 896 (2114)
|.| ..|.|+++++.++...+..
T Consensus 352 R~g--~~g~~~~~~~~~~~~~~~~ 373 (394)
T 1fuu_A 352 RFG--RKGVAINFVTNEDVGAMRE 373 (394)
T ss_dssp ------------------------
T ss_pred CCC--CCceEEEEEchhHHHHHHH
Confidence 987 6799999999887655544
No 51
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=9.2e-37 Score=387.59 Aligned_cols=343 Identities=17% Similarity=0.252 Sum_probs=143.1
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q 1405 (2114)
|.....+.+.. ||..|+|+|.++++.+++++ +++++||||||||++|.+|+++.+.....++ ++||++|+++|+.|
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~-~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~--~~lil~P~~~L~~q 104 (394)
T 1fuu_A 28 LDENLLRGVFGYGFEEPSAIQQRAIMPIIEGH-DVLAQAQSGTGKTGTFSIAALQRIDTSVKAP--QALMLAPTRELALQ 104 (394)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTC-CEEECCCSSHHHHHHHHHHHHHHCCTTCCSC--CEEEECSSHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCC-CEEEECCCCChHHHHHHHHHHHHhhccCCCC--CEEEEcCCHHHHHH
Confidence 44556666655 79999999999999999864 5999999999999999999998886633333 89999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcccc--hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCch
Q 000129 1406 RYRDWEIKFGQGLGMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483 (2114)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~l~G~~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~ 1483 (2114)
+++.+.+ +....++++..++|+.... ...+..++|+|+||+++...+.+ ....+.++++||+||||.+.+..
T Consensus 105 ~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~vIiDEah~~~~~~--- 178 (394)
T 1fuu_A 105 IQKVVMA-LAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQR--RRFRTDKIKMFILDEADEMLSSG--- 178 (394)
T ss_dssp HHHHHHH-HTTTSCCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEETHHHHHHTT---
T ss_pred HHHHHHH-HhccCCeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHh--CCcchhhCcEEEEEChHHhhCCC---
Confidence 9999984 5555688999999987653 33445789999999998877765 23457889999999999886543
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEEcccCCCh--hHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCH
Q 000129 1484 LEVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTK 1561 (2114)
Q Consensus 1484 le~i~srl~~i~~~~~~~~riV~lSATl~n~--~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~ 1561 (2114)
+...+..+...++...+++++|||+++. ..+..|++... .+........+..+........... ...
T Consensus 179 ---~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 247 (394)
T 1fuu_A 179 ---FKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPV-RILVKKDELTLEGIKQFYVNVEEEE-------YKY 247 (394)
T ss_dssp ---CHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCE-EEEECC-----------------------------
T ss_pred ---cHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCe-EEEecCccccCCCceEEEEEcCchh-------hHH
Confidence 2233334444556789999999999863 22334443321 1111111111101111100000000 000
Q ss_pred HHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecC
Q 000129 1562 PTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHE 1641 (2114)
Q Consensus 1562 ~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~ 1641 (2114)
.....+... ...+++||||++++.|+.++..|.. .+.++..+||
T Consensus 248 ~~l~~~~~~-~~~~~~lVf~~~~~~~~~l~~~L~~-----------------------------------~~~~~~~~~~ 291 (394)
T 1fuu_A 248 ECLTDLYDS-ISVTQAVIFCNTRRKVEELTTKLRN-----------------------------------DKFTVSAIYS 291 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhc-CCCCcEEEEECCHHHHHHHHHHHHH-----------------------------------cCCeEEEeeC
Confidence 111122222 2457899999999999888865521 1345889999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEE
Q 000129 1642 GLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKC 1721 (2114)
Q Consensus 1642 ~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~ 1721 (2114)
+|+..+|..+++.|++|..+|||||+++++|+|+|++.+|| +++.|.+..+|+||+|||||. +..|.|
T Consensus 292 ~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi----------~~~~p~s~~~~~Qr~GR~~R~--g~~g~~ 359 (394)
T 1fuu_A 292 DLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVI----------NYDLPANKENYIHRIGRGGRF--GRKGVA 359 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEE----------EeCCCCCHHHHHHHcCcccCC--CCCceE
Confidence 99999999999999999999999999999999999999999 788899999999999999997 578999
Q ss_pred EEEeecCcHHHHHHHH
Q 000129 1722 VILCHAPRKEYYKKFL 1737 (2114)
Q Consensus 1722 iil~~~~~~~~~~~~l 1737 (2114)
++++.+.+...++.+.
T Consensus 360 ~~~~~~~~~~~~~~l~ 375 (394)
T 1fuu_A 360 INFVTNEDVGAMRELE 375 (394)
T ss_dssp ----------------
T ss_pred EEEEchhHHHHHHHHH
Confidence 9999988766655544
No 52
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.2e-35 Score=388.47 Aligned_cols=328 Identities=21% Similarity=0.294 Sum_probs=244.9
Q ss_pred ChhhHhhc---CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 483 PEWAQPAF---KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 483 p~~~~~~f---~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
++.+...+ .||.+|+|+|.++++.++.++ +++++||||+|||++|++|++.. ..++|||+|+
T Consensus 10 ~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~-d~lv~apTGsGKTl~~~lp~l~~--------------~g~~lvi~P~ 74 (523)
T 1oyw_A 10 ESGAKQVLQETFGYQQFRPGQEEIIDTVLSGR-DCLVVMPTGGGKSLCYQIPALLL--------------NGLTVVVSPL 74 (523)
T ss_dssp HHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTC-CEEEECSCHHHHHHHHHHHHHHS--------------SSEEEEECSC
T ss_pred CHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCC-CEEEECCCCcHHHHHHHHHHHHh--------------CCCEEEECCh
Confidence 44444444 589999999999999998775 59999999999999999998742 1279999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh-------hccceEEEcCHhHHH--HHHhccCCCcccccccEEEEe
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWD--IITRKSGDRTYTQLVKLLIID 630 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPek~d--~l~r~~~~~~~l~~v~liIiD 630 (2114)
++|+.|+++.+.+. |+.+..++|+....... ....+|+|+|||++. .+... ....++++||||
T Consensus 75 ~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~----l~~~~~~~vViD 146 (523)
T 1oyw_A 75 ISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEH----LAHWNPVLLAVD 146 (523)
T ss_dssp HHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHH----HTTSCEEEEEES
T ss_pred HHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHH----HhhCCCCEEEEe
Confidence 99999999998764 78899998876644321 245899999999862 11111 123578999999
Q ss_pred ccccccc---CCchhHHHHHHHHHHHHhhccccccEEEEccccCCh--HHHHHHHhccccCceEeecCCcccccceeEEE
Q 000129 631 EIHLLHD---NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY--EDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI 705 (2114)
Q Consensus 631 EaH~l~d---~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~--~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~ 705 (2114)
|||++.+ .+.+.+..+. ++. ...++.++++||||+++. .++..+++.. .+........+| .+...+
T Consensus 147 EaH~i~~~g~~fr~~~~~l~-~l~----~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~--~~~~~~~~~~r~-~l~~~v- 217 (523)
T 1oyw_A 147 EAHCISQWGHDFRPEYAALG-QLR----QRFPTLPFMALTATADDTTRQDIVRLLGLN--DPLIQISSFDRP-NIRYML- 217 (523)
T ss_dssp SGGGGCTTSSCCCHHHHGGG-GHH----HHCTTSCEEEEESCCCHHHHHHHHHHHTCC--SCEEEECCCCCT-TEEEEE-
T ss_pred CccccCcCCCccHHHHHHHH-HHH----HhCCCCCEEEEeCCCCHHHHHHHHHHhCCC--CCeEEeCCCCCC-ceEEEE-
Confidence 9999975 2555554332 221 223568999999998763 5677777653 223333333333 232222
Q ss_pred eeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccC
Q 000129 706 GIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVK 785 (2114)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~ 785 (2114)
..... .... +.+.+. ...++++||||+|++.++.++..|...+
T Consensus 218 -~~~~~---~~~~----l~~~l~-~~~~~~~IVf~~sr~~~e~l~~~L~~~g---------------------------- 260 (523)
T 1oyw_A 218 -MEKFK---PLDQ----LMRYVQ-EQRGKSGIIYCNSRAKVEDTAARLQSKG---------------------------- 260 (523)
T ss_dssp -EECSS---HHHH----HHHHHH-HTTTCCEEEECSSHHHHHHHHHHHHHTT----------------------------
T ss_pred -EeCCC---HHHH----HHHHHH-hcCCCcEEEEeCCHHHHHHHHHHHHHCC----------------------------
Confidence 12111 1222 222222 2356799999999999999999987643
Q ss_pred cchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHH
Q 000129 786 SNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIM 865 (2114)
Q Consensus 786 ~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~ 865 (2114)
..+..|||+|+..+|..+++.|++|.++|||||+++++|||+|++++||+ |+++. |+.+|+
T Consensus 261 ---------~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~----~~~p~------s~~~y~ 321 (523)
T 1oyw_A 261 ---------ISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVH----FDIPR------NIESYY 321 (523)
T ss_dssp ---------CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEE----SSCCS------SHHHHH
T ss_pred ---------CCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEE----ECCCC------CHHHHH
Confidence 24788999999999999999999999999999999999999999999999 77665 889999
Q ss_pred HhhcccCCCCCCCceEEEEEcCCCcHHHHHHhhcC
Q 000129 866 QMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQ 900 (2114)
Q Consensus 866 Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~~ll~~ 900 (2114)
||+|||||.| ..|.|+++++..+...+..++.+
T Consensus 322 Qr~GRaGR~g--~~~~~~l~~~~~d~~~~~~~~~~ 354 (523)
T 1oyw_A 322 QETGRAGRDG--LPAEAMLFYDPADMAWLRRCLEE 354 (523)
T ss_dssp HHHTTSCTTS--SCEEEEEEECHHHHHHHHHHHHT
T ss_pred HHhccccCCC--CCceEEEEeCHHHHHHHHHHHhc
Confidence 9999999987 67999999998888777777665
No 53
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=4.3e-35 Score=363.84 Aligned_cols=315 Identities=19% Similarity=0.288 Sum_probs=241.1
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
||..|+|+|.++++.++++ ++++++||||||||++|.+++++. +. +++|++|+++|+.|+++.++ .+...
T Consensus 13 g~~~l~~~Q~~~i~~i~~~-~~~lv~~~TGsGKT~~~~~~~~~~------~~--~~liv~P~~~L~~q~~~~~~-~~~~~ 82 (337)
T 2z0m_A 13 GFKNFTEVQSKTIPLMLQG-KNVVVRAKTGSGKTAAYAIPILEL------GM--KSLVVTPTRELTRQVASHIR-DIGRY 82 (337)
T ss_dssp TCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHH------TC--CEEEECSSHHHHHHHHHHHH-HHTTT
T ss_pred CCCCCCHHHHHHHHHHhcC-CCEEEEcCCCCcHHHHHHHHHHhh------cC--CEEEEeCCHHHHHHHHHHHH-HHhhh
Confidence 7999999999999999875 469999999999999999998752 33 89999999999999999998 56656
Q ss_pred CCcEEEEEcCCcccc--hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHH
Q 000129 1418 LGMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIA 1495 (2114)
Q Consensus 1418 ~g~~v~~l~G~~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~ 1495 (2114)
.+.++..++|+.... ...+..++|+|+||+++..++.+ ....+.++++||+||||++.++. +...+..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~iViDEah~~~~~~------~~~~~~~~~ 154 (337)
T 2z0m_A 83 MDTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSK--GVIDLSSFEIVIIDEADLMFEMG------FIDDIKIIL 154 (337)
T ss_dssp SCCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHT--TSCCGGGCSEEEEESHHHHHHTT------CHHHHHHHH
T ss_pred cCCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHc--CCcchhhCcEEEEEChHHhhccc------cHHHHHHHH
Confidence 688899999987654 33456789999999999877665 23357889999999999987554 334445555
Q ss_pred hhcCCCceEEEEcccCCCh--hHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcC
Q 000129 1496 SQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKN 1573 (2114)
Q Consensus 1496 ~~~~~~~riV~lSATl~n~--~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 1573 (2114)
...+...+++++|||+++. ..+..|++... .+ ........+...+...... . +.....+ .. ..
T Consensus 155 ~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~-~~-~~ 219 (337)
T 2z0m_A 155 AQTSNRKITGLFSATIPEEIRKVVKDFITNYE--EI--EACIGLANVEHKFVHVKDD-W--------RSKVQAL-RE-NK 219 (337)
T ss_dssp HHCTTCSEEEEEESCCCHHHHHHHHHHSCSCE--EE--ECSGGGGGEEEEEEECSSS-S--------HHHHHHH-HT-CC
T ss_pred hhCCcccEEEEEeCcCCHHHHHHHHHhcCCce--ee--ecccccCCceEEEEEeChH-H--------HHHHHHH-Hh-CC
Confidence 5567788999999999764 24555554321 11 1112222233222222111 1 1111112 22 46
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHH
Q 000129 1574 EKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSA 1653 (2114)
Q Consensus 1574 ~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~ 1653 (2114)
++++||||++++.+..++..| .++..+||+|+..+|..+++
T Consensus 220 ~~~~lvf~~~~~~~~~l~~~l---------------------------------------~~~~~~~~~~~~~~r~~~~~ 260 (337)
T 2z0m_A 220 DKGVIVFVRTRNRVAKLVRLF---------------------------------------DNAIELRGDLPQSVRNRNID 260 (337)
T ss_dssp CSSEEEECSCHHHHHHHHTTC---------------------------------------TTEEEECTTSCHHHHHHHHH
T ss_pred CCcEEEEEcCHHHHHHHHHHh---------------------------------------hhhhhhcCCCCHHHHHHHHH
Confidence 788999999999998777332 04788999999999999999
Q ss_pred HHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHH
Q 000129 1654 LFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYY 1733 (2114)
Q Consensus 1654 ~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~ 1733 (2114)
.|++|+++|||||+++++|+|+|++.+|| +++.|.+..+|+||+|||||. +..|.|++++. .+..+.
T Consensus 261 ~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi----------~~~~~~s~~~~~Q~~GR~gR~--g~~g~~~~~~~-~~~~~~ 327 (337)
T 2z0m_A 261 AFREGEYDMLITTDVASRGLDIPLVEKVI----------NFDAPQDLRTYIHRIGRTGRM--GRKGEAITFIL-NEYWLE 327 (337)
T ss_dssp HHHTTSCSEEEECHHHHTTCCCCCBSEEE----------ESSCCSSHHHHHHHHTTBCGG--GCCEEEEEEES-SCHHHH
T ss_pred HHHcCCCcEEEEcCccccCCCccCCCEEE----------EecCCCCHHHhhHhcCccccC--CCCceEEEEEe-CcHHHH
Confidence 99999999999999999999999999999 788999999999999999998 57899999998 666666
Q ss_pred HHHH
Q 000129 1734 KKFL 1737 (2114)
Q Consensus 1734 ~~~l 1737 (2114)
+++.
T Consensus 328 ~~i~ 331 (337)
T 2z0m_A 328 KEVK 331 (337)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 6554
No 54
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=2.7e-35 Score=385.22 Aligned_cols=328 Identities=17% Similarity=0.271 Sum_probs=244.7
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHH
Q 000129 1332 YEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2114)
Q Consensus 1332 ~~~l~~gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~ 1411 (2114)
+...| ||..|+|+|.++++.+++++ ++++.+|||||||+||++|++. ..+ ++|||+|+++|+.|+++.++
T Consensus 17 l~~~~-g~~~~r~~Q~~~i~~il~g~-d~lv~apTGsGKTl~~~lp~l~------~~g--~~lvi~P~~aL~~q~~~~l~ 86 (523)
T 1oyw_A 17 LQETF-GYQQFRPGQEEIIDTVLSGR-DCLVVMPTGGGKSLCYQIPALL------LNG--LTVVVSPLISLMKDQVDQLQ 86 (523)
T ss_dssp HHHTT-CCSSCCTTHHHHHHHHHTTC-CEEEECSCHHHHHHHHHHHHHH------SSS--EEEEECSCHHHHHHHHHHHH
T ss_pred HHHHh-CCCCCCHHHHHHHHHHHcCC-CEEEECCCCcHHHHHHHHHHHH------hCC--CEEEECChHHHHHHHHHHHH
Confidence 34444 59999999999999999865 5999999999999999999873 134 89999999999999999888
Q ss_pred HHhcCCCCcEEEEEcCCcccch-----hh--ccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchH
Q 000129 1412 IKFGQGLGMRVVELTGETAMDL-----KL--LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVL 1484 (2114)
Q Consensus 1412 ~~f~~~~g~~v~~l~G~~~~~~-----~~--l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~l 1484 (2114)
+ + |+.+..++|+.+.+. .. ....+|+|+|||++... .+.......++++|||||||++.+++ ..+
T Consensus 87 ~-~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~--~~~~~l~~~~~~~vViDEaH~i~~~g-~~f 158 (523)
T 1oyw_A 87 A-N----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLD--NFLEHLAHWNPVLLAVDEAHCISQWG-HDF 158 (523)
T ss_dssp H-T----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTST--THHHHHTTSCEEEEEESSGGGGCTTS-SCC
T ss_pred H-c----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCh--HHHHHHhhCCCCEEEEeCccccCcCC-Ccc
Confidence 3 3 678888888766431 11 13469999999997421 11112234789999999999997543 222
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEcccCCCh--hHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHH
Q 000129 1485 EVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKP 1562 (2114)
Q Consensus 1485 e~i~srl~~i~~~~~~~~riV~lSATl~n~--~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~ 1562 (2114)
...+.++..+.... ++.+++++|||+++. .++..|++.....++. ....+| .+...+... .... ..
T Consensus 159 r~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~-~~~~r~-~l~~~v~~~--~~~~-------~~ 226 (523)
T 1oyw_A 159 RPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQI-SSFDRP-NIRYMLMEK--FKPL-------DQ 226 (523)
T ss_dssp CHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEE-CCCCCT-TEEEEEEEC--SSHH-------HH
T ss_pred HHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEe-CCCCCC-ceEEEEEeC--CCHH-------HH
Confidence 22233333333333 468999999999875 5788999876544443 233333 233322221 1100 11
Q ss_pred HHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCC
Q 000129 1563 TFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEG 1642 (2114)
Q Consensus 1563 ~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ 1642 (2114)
....+.. ..++++||||+|++.|+.++..|.. .+..+..|||+
T Consensus 227 l~~~l~~--~~~~~~IVf~~sr~~~e~l~~~L~~-----------------------------------~g~~~~~~h~~ 269 (523)
T 1oyw_A 227 LMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQS-----------------------------------KGISAAAYHAG 269 (523)
T ss_dssp HHHHHHH--TTTCCEEEECSSHHHHHHHHHHHHH-----------------------------------TTCCEEEECTT
T ss_pred HHHHHHh--cCCCcEEEEeCCHHHHHHHHHHHHH-----------------------------------CCCCEEEecCC
Confidence 1222222 2567999999999999999977732 23468999999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEE
Q 000129 1643 LNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCV 1722 (2114)
Q Consensus 1643 ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~i 1722 (2114)
|+.++|..+++.|++|+++|||||+++++|+|+|++++|| +++.|.++.+|+||+|||||. +..|.|+
T Consensus 270 l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI----------~~~~p~s~~~y~Qr~GRaGR~--g~~~~~~ 337 (523)
T 1oyw_A 270 LENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV----------HFDIPRNIESYYQETGRAGRD--GLPAEAM 337 (523)
T ss_dssp SCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEE----------ESSCCSSHHHHHHHHTTSCTT--SSCEEEE
T ss_pred CCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEE----------EECCCCCHHHHHHHhccccCC--CCCceEE
Confidence 9999999999999999999999999999999999999999 899999999999999999997 5789999
Q ss_pred EEeecCcHHHHHHHHH
Q 000129 1723 ILCHAPRKEYYKKFLR 1738 (2114)
Q Consensus 1723 il~~~~~~~~~~~~lR 1738 (2114)
+++...+...++.++.
T Consensus 338 l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 338 LFYDPADMAWLRRCLE 353 (523)
T ss_dssp EEECHHHHHHHHHHHH
T ss_pred EEeCHHHHHHHHHHHh
Confidence 9998877777666664
No 55
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=9e-35 Score=372.07 Aligned_cols=331 Identities=17% Similarity=0.197 Sum_probs=229.3
Q ss_pred CCChhhHhhcCCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccH
Q 000129 481 EMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMK 560 (2114)
Q Consensus 481 ~lp~~~~~~f~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~r 560 (2114)
++.++++..| |+ +|+|+|.++++.++.+. |++++||||||||++|+++++..+.. +.++||++|++
T Consensus 9 ~~~~~l~~~~-~~-~~~~~Q~~~i~~i~~~~-~~lv~apTGsGKT~~~l~~~~~~~~~-----------~~~~lil~Pt~ 74 (414)
T 3oiy_A 9 DFRSFFKKKF-GK-DLTGYQRLWAKRIVQGK-SFTMVAPTGVGKTTFGMMTALWLARK-----------GKKSALVFPTV 74 (414)
T ss_dssp HHHHHHHHHH-SS-CCCHHHHHHHHHHTTTC-CEECCSCSSSSHHHHHHHHHHHHHTT-----------TCCEEEEESSH
T ss_pred HHHHHHHHhc-CC-CCCHHHHHHHHHHhcCC-CEEEEeCCCCCHHHHHHHHHHHHhcC-----------CCEEEEEECCH
Confidence 3445566655 45 79999999999988764 69999999999999999998877622 34899999999
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEEeCCCccChh-----h--hccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccc
Q 000129 561 ALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ-----Q--IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIH 633 (2114)
Q Consensus 561 aLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~-----~--~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH 633 (2114)
+|+.|+++.+.+++. .|+++..++|+.+.... . ...++|+|+||+++....+. ..+.++++|||||||
T Consensus 75 ~L~~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~----~~~~~~~~iViDEaH 149 (414)
T 3oiy_A 75 TLVKQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK----LSQKRFDFVFVDDVD 149 (414)
T ss_dssp HHHHHHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH----HTTCCCSEEEESCHH
T ss_pred HHHHHHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH----hccccccEEEEeChH
Confidence 999999999999776 89999999999876321 1 12489999999998333332 335579999999999
Q ss_pred cccc------------CCchh-HHHHHHHHHH--HHhhc--cccccEEEEccc-cCCh---HHHHHHHhccccCceEeec
Q 000129 634 LLHD------------NRGPV-LESIVARTVR--QIETT--KEHIRLVGLSAT-LPNY---EDVALFLRVNLEKGLFYFD 692 (2114)
Q Consensus 634 ~l~d------------~rg~~-le~iv~rl~~--~~~~~--~~~~riv~lSAT-lpn~---~dva~~l~~~~~~~~~~f~ 692 (2114)
++.+ ++.+. +..++..+.. ..... ....+++++||| .|.. .-...++..... .
T Consensus 150 ~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~------~ 223 (414)
T 3oiy_A 150 AVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVG------R 223 (414)
T ss_dssp HHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSS------C
T ss_pred hhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcC------c
Confidence 8752 23333 4444443310 00011 167899999999 4432 112233322211 1
Q ss_pred CCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCch
Q 000129 693 NSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSV 772 (2114)
Q Consensus 693 ~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~ 772 (2114)
....+..+.+.+... .+ ...+ .+.+.. .++++||||++++.+..++..|...+.
T Consensus 224 ~~~~~~~i~~~~~~~--~~----~~~l----~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~-------------- 277 (414)
T 3oiy_A 224 LVSVARNITHVRISS--RS----KEKL----VELLEI--FRDGILIFAQTEEEGKELYEYLKRFKF-------------- 277 (414)
T ss_dssp CCCCCCSEEEEEESS--CC----HHHH----HHHHHH--HCSSEEEEESSHHHHHHHHHHHHHTTC--------------
T ss_pred cccccccchheeecc--CH----HHHH----HHHHHH--cCCCEEEEECCHHHHHHHHHHHHHcCC--------------
Confidence 111122333333322 11 1111 222222 258999999999999999999986532
Q ss_pred hHHHHHhhhcccCcchhhhhccCceE-EecCCCCHHHHHHHHHHHhCCCceEEEe----chHhhhhcCCCc-eEEEEecc
Q 000129 773 SREILQSHTDMVKSNDLKDLLPYGFA-IHHAGMTRGDRQLVEDLFGDGHVQVLVS----TATLAWGVNLPA-HTVIIKGT 846 (2114)
Q Consensus 773 ~~~~l~~~~~~~~~~~L~~ll~~gv~-~hHagl~~~~R~~v~~~F~~g~i~VLVa----T~tla~GVdlP~-v~vVI~~~ 846 (2114)
.+. .+||. +|. ++.|++|.++|||| |+++++|+|+|+ +++||+
T Consensus 278 -----------------------~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~-- 326 (414)
T 3oiy_A 278 -----------------------NVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIF-- 326 (414)
T ss_dssp -----------------------CEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEE--
T ss_pred -----------------------ceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEE--
Confidence 234 56774 444 99999999999999 999999999999 999998
Q ss_pred eeccCCCCccccCCHHHHHHhhcccCCCCCC--CceEEEEEcCCCc-HHHHHHhhc
Q 000129 847 QIYNPEKGAWTELSPLDIMQMLGRAGRPQYD--SYGEGIIITGHSE-LRYYLSLMN 899 (2114)
Q Consensus 847 ~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d--~~G~~iil~~~~e-~~~~~~ll~ 899 (2114)
|+++.+ .+..+|+||+|||||.|.+ +.|.+++++.+.. ...+.+.++
T Consensus 327 --~~~p~~----~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 327 --WGTPSG----PDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 376 (414)
T ss_dssp --ESCCTT----TCHHHHHHHHGGGCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred --ECCCCC----CCHHHHHHHhCccccCCCCCCcceEEEEEEccHHHHHHHHHHhc
Confidence 776621 2889999999999999876 5899999994422 234444455
No 56
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.3e-33 Score=361.17 Aligned_cols=317 Identities=15% Similarity=0.152 Sum_probs=224.2
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000129 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~ 1418 (2114)
| .|+|+|.++++.+++++ |++++||||||||++|+++++..+.. ++ ++||++|+++|+.|+++.+++ ++. .
T Consensus 20 ~-~~~~~Q~~~i~~i~~~~-~~lv~apTGsGKT~~~l~~~~~~~~~---~~--~~lil~Pt~~L~~q~~~~~~~-~~~-~ 90 (414)
T 3oiy_A 20 K-DLTGYQRLWAKRIVQGK-SFTMVAPTGVGKTTFGMMTALWLARK---GK--KSALVFPTVTLVKQTLERLQK-LAD-E 90 (414)
T ss_dssp S-CCCHHHHHHHHHHTTTC-CEECCSCSSSSHHHHHHHHHHHHHTT---TC--CEEEEESSHHHHHHHHHHHHH-HCC-S
T ss_pred C-CCCHHHHHHHHHHhcCC-CEEEEeCCCCCHHHHHHHHHHHHhcC---CC--EEEEEECCHHHHHHHHHHHHH-Hcc-C
Confidence 5 79999999999999854 69999999999999999998876633 34 899999999999999999995 666 6
Q ss_pred CcEEEEEcCCcccc-----hhhcc--CCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCC----------C
Q 000129 1419 GMRVVELTGETAMD-----LKLLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG----------G 1481 (2114)
Q Consensus 1419 g~~v~~l~G~~~~~-----~~~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~----------g 1481 (2114)
|++++.++|+.+.. ...+. .++|+|+||+++..++.. ..+.++++||+||||++.+++ |
T Consensus 91 ~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~----~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~ 166 (414)
T 3oiy_A 91 KVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK----LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVG 166 (414)
T ss_dssp SCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH----HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTT
T ss_pred CceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH----hccccccEEEEeChHhhhhccchhhhHHhhcC
Confidence 89999999988762 22232 379999999998776654 346689999999999875421 1
Q ss_pred --ch-HHHHHHHHHH--HHhhcC--CCceEEEEcccC-CCh---hHHHHHhcCCCCceeecCCCCCccCcEEEEeccccc
Q 000129 1482 --PV-LEVIVSRMRY--IASQVE--NKIRIVALSTSL-ANA---KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDIT 1550 (2114)
Q Consensus 1482 --~~-le~i~srl~~--i~~~~~--~~~riV~lSATl-~n~---~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~ 1550 (2114)
+. +..++..+.. ....++ .+.+++++|||+ +.. .-+..+++..... ....+..+...+... .
T Consensus 167 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~--~ 239 (414)
T 3oiy_A 167 IPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGR-----LVSVARNITHVRISS--R 239 (414)
T ss_dssp CCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSSC-----CCCCCCSEEEEEESS--C
T ss_pred CcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcCc-----cccccccchheeecc--C
Confidence 11 2222222210 001111 678999999994 432 1233344422111 111111222222211 1
Q ss_pred chHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHH
Q 000129 1551 NFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKA 1630 (2114)
Q Consensus 1551 ~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~ 1630 (2114)
. ......+... .++++||||++++.|..++..|..
T Consensus 240 ~---------~~~l~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~---------------------------------- 274 (414)
T 3oiy_A 240 S---------KEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKR---------------------------------- 274 (414)
T ss_dssp C---------HHHHHHHHHH--HCSSEEEEESSHHHHHHHHHHHHH----------------------------------
T ss_pred H---------HHHHHHHHHH--cCCCEEEEECCHHHHHHHHHHHHH----------------------------------
Confidence 1 1111222222 258999999999999999877632
Q ss_pred HhccceE-eecCCCCHHHHHHHHHHHhcCCceEEEe----cCccccccCCCC-cEEEEEeeeEecCCcCcCCC--CCHhH
Q 000129 1631 TLRHGVG-YLHEGLNKTDQEVVSALFEAGKIKVCVM----SSSMCWGVPLTA-HLVVVMGTQYYDGQENAHTD--YPVTD 1702 (2114)
Q Consensus 1631 ~l~~gV~-~~H~~ls~~dR~~v~~~F~~g~i~VLVa----T~~la~Gvdip~-~~vVI~gt~~yd~~~~~~~~--~s~~~ 1702 (2114)
.+..+. .+||. +|+ ++.|++|+++|||| |+++++|+|+|+ +.+|| +++.| .+..+
T Consensus 275 -~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI----------~~~~p~~~~~~~ 337 (414)
T 3oiy_A 275 -FKFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVI----------FWGTPSGPDVYT 337 (414)
T ss_dssp -TTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEE----------EESCCTTTCHHH
T ss_pred -cCCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEE----------EECCCCCCCHHH
Confidence 134566 88884 444 99999999999999 999999999999 99999 88899 89999
Q ss_pred HHHhHcccCCCCCC--CceEEEEEeecCcHHHHHHHHHh
Q 000129 1703 LLQMMGHASRPLLD--NSGKCVILCHAPRKEYYKKFLRL 1739 (2114)
Q Consensus 1703 ~lQr~GRAGR~~~~--~~G~~iil~~~~~~~~~~~~lRl 1739 (2114)
|+||+|||||.|.+ ..|.|++++ .+...++.+.+.
T Consensus 338 y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~ 374 (414)
T 3oiy_A 338 YIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTR 374 (414)
T ss_dssp HHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHH
T ss_pred HHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHH
Confidence 99999999998755 689999999 444555444433
No 57
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=3.6e-33 Score=371.28 Aligned_cols=350 Identities=19% Similarity=0.290 Sum_probs=191.5
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000129 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2114)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (2114)
..+|+|+|.++++.++.+ .+++++||||||||++|++|+++.+...... .+.++|||+|+++|+.|+++.|.+
T Consensus 5 ~~~~~~~Q~~~i~~~~~~-~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~------~~~~~lil~P~~~L~~q~~~~~~~ 77 (556)
T 4a2p_A 5 TKKARSYQIELAQPAING-KNALICAPTGSGKTFVSILICEHHFQNMPAG------RKAKVVFLATKVPVYEQQKNVFKH 77 (556)
T ss_dssp ---CCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHTCCSS------CCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHHHHHHHHHHhCccc------CCCeEEEEeCCHHHHHHHHHHHHH
Confidence 348999999999999876 5699999999999999999999998765321 245899999999999999999999
Q ss_pred hhccCCcEEEEEeCCCccChh---hhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHH
Q 000129 573 RLQMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVAR 649 (2114)
Q Consensus 573 ~~~~~gi~v~~l~Gd~~~~~~---~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r 649 (2114)
++...++++..++|+.....+ ....++|+|+||+++....+... ...+..+++|||||||++.+. ++ +..++.+
T Consensus 78 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~-~~~~~~~~~vViDEah~~~~~-~~-~~~~~~~ 154 (556)
T 4a2p_A 78 HFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT-LTSLSIFTLMIFDECHNTTGN-HP-YNVLMTR 154 (556)
T ss_dssp HHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSS-CCCSTTCSEEEEETGGGCSTT-SH-HHHHHHH
T ss_pred HhcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCc-ccccccCCEEEEECCcccCCc-ch-HHHHHHH
Confidence 998889999999998865432 23578999999999744443321 125788999999999999753 33 5555544
Q ss_pred HHHHH-hhccccccEEEEccccC--ChHHHHHHHhc------cccCceEeecCC-------cccccceeEEEeecc--Cc
Q 000129 650 TVRQI-ETTKEHIRLVGLSATLP--NYEDVALFLRV------NLEKGLFYFDNS-------YRPVPLSQQYIGIQV--KK 711 (2114)
Q Consensus 650 l~~~~-~~~~~~~riv~lSATlp--n~~dva~~l~~------~~~~~~~~f~~~-------~rpv~l~~~~~~~~~--~~ 711 (2114)
.+... ....+..++++||||++ +..++..|+.. ......+..... +.+.+... +..+.. ..
T Consensus 155 ~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 233 (556)
T 4a2p_A 155 YLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEID-VRLVKRRIHN 233 (556)
T ss_dssp HHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEE-EEECCCCSCC
T ss_pred HHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceE-EEEcCCCcCC
Confidence 43321 22245689999999984 34444444321 101011110000 00001100 000000 00
Q ss_pred hhH--------------------------------------HH-------------------------------------
Q 000129 712 PLQ--------------------------------------RF------------------------------------- 716 (2114)
Q Consensus 712 ~~~--------------------------------------~~------------------------------------- 716 (2114)
... ..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (556)
T 4a2p_A 234 PFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYND 313 (556)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHH
Confidence 000 00
Q ss_pred --------------HH-------------------------------------------hhHHHHHHHHHH---hCCCeE
Q 000129 717 --------------QL-------------------------------------------MNDLCYEKVVAV---AGKHQV 736 (2114)
Q Consensus 717 --------------~~-------------------------------------------~~~~~~~~i~~~---~~~~~v 736 (2114)
.. -...+.+.+.+. ..++++
T Consensus 314 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~ 393 (556)
T 4a2p_A 314 ALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRT 393 (556)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCE
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceE
Confidence 00 000011111122 346799
Q ss_pred EEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHH
Q 000129 737 LIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLF 816 (2114)
Q Consensus 737 LVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F 816 (2114)
||||+++..+..++..|....... ++ ....+...+...+||+|+..+|..+++.|
T Consensus 394 lVF~~~~~~~~~l~~~L~~~~~~~-----~~--------------------~~~~~~g~~~~~~~~~~~~~~R~~~~~~F 448 (556)
T 4a2p_A 394 LLFAKTRALVSALKKCMEENPILN-----YI--------------------KPGVLMGRGRRDQTTGMTLPSQKGVLDAF 448 (556)
T ss_dssp EEEESSHHHHHHHHHHHTTCSGGG-----SC--------------------CEEC-------------------------
T ss_pred EEEEccHHHHHHHHHHHHhCCCcc-----ee--------------------eeeEEEccCCcccccccCHHHHHHHHHHh
Confidence 999999999999999886531000 00 00112344566779999999999999999
Q ss_pred hC-CCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcHH
Q 000129 817 GD-GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR 892 (2114)
Q Consensus 817 ~~-g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~ 892 (2114)
++ |.++|||||+++++|||+|++++||+ ||++. ++.+|+||+|| ||. ..|.++++++..+..
T Consensus 449 ~~~g~~~vLvaT~~~~~GiDip~v~~VI~----~d~p~------s~~~~~Qr~GR-gR~---~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 449 KTSKDNRLLIATSVADEGIDIVQCNLVVL----YEYSG------NVTKMIQVRGR-GRA---AGSKCILVTSKTEVV 511 (556)
T ss_dssp -----CCEEEEEC-----------CEEEE----ETCCS------CHHHHHHC------------CCEEEEESCHHHH
T ss_pred cccCceEEEEEcCchhcCCCchhCCEEEE----eCCCC------CHHHHHHhcCC-CCC---CCceEEEEEeCcchH
Confidence 99 99999999999999999999999999 77765 88899999999 996 579999999886643
No 58
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=2.6e-33 Score=372.72 Aligned_cols=349 Identities=20% Similarity=0.246 Sum_probs=191.3
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000129 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~ 1418 (2114)
.-.|+|+|.++++.++++ .++++++|||||||++|.+|+++.+.......+.++|||+|+++|+.|+++.|++.+.. .
T Consensus 5 ~~~~~~~Q~~~i~~~~~~-~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~ 82 (556)
T 4a2p_A 5 TKKARSYQIELAQPAING-KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER-Q 82 (556)
T ss_dssp ---CCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG-G
T ss_pred CCCCCHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcc-c
Confidence 347999999999999885 55999999999999999999999888743222348999999999999999999965543 4
Q ss_pred CcEEEEEcCCcccch---hhccCCcEEEEChhhHHHHHhhhcccc-cccceeEEEecccccccCCCCchHHHHHHHHHHH
Q 000129 1419 GMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRK-YVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYI 1494 (2114)
Q Consensus 1419 g~~v~~l~G~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~-~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i 1494 (2114)
++++..++|+..... .....++|+|+||+++..++.+ ... .+.++++||+||||++.++. + +..++.++...
T Consensus 83 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~~vViDEah~~~~~~-~-~~~~~~~~~~~ 158 (556)
T 4a2p_A 83 GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED--GTLTSLSIFTLMIFDECHNTTGNH-P-YNVLMTRYLEQ 158 (556)
T ss_dssp TCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHS--SSCCCSTTCSEEEEETGGGCSTTS-H-HHHHHHHHHHH
T ss_pred CceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHh--CcccccccCCEEEEECCcccCCcc-h-HHHHHHHHHHh
Confidence 889999999876542 2335679999999999887765 223 57889999999999997654 3 55554333221
Q ss_pred -HhhcCCCceEEEEcccCC--ChhHHHHHhcCC-------CCceeecCCC---------CCccCcEEEEecccccchH--
Q 000129 1495 -ASQVENKIRIVALSTSLA--NAKDLGEWIGAT-------SHGLFNFPPG---------VRPVPLEIHIQGVDITNFE-- 1553 (2114)
Q Consensus 1495 -~~~~~~~~riV~lSATl~--n~~dla~wl~~~-------~~~~~~f~~~---------~rpv~l~~~~~~~~~~~~~-- 1553 (2114)
........++++||||++ +..++.+|+... ....+..... .+|......+.......+.
T Consensus 159 ~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (556)
T 4a2p_A 159 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 238 (556)
T ss_dssp HHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHH
T ss_pred hhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHH
Confidence 111235689999999994 344555544210 0000110000 0111111110000000000
Q ss_pred -----------------------------------HHHHh----------------------------------------
Q 000129 1554 -----------------------------------ARMQA---------------------------------------- 1558 (2114)
Q Consensus 1554 -----------------------------------~~~~~---------------------------------------- 1558 (2114)
.....
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 318 (556)
T 4a2p_A 239 ISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 318 (556)
T ss_dssp HHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00000
Q ss_pred --------------------------------------------------cCHHHHHHHH----HHh--cCCCCEEEEeC
Q 000129 1559 --------------------------------------------------MTKPTFTAIV----QHA--KNEKPALVFVP 1582 (2114)
Q Consensus 1559 --------------------------------------------------~~~~~~~~i~----~~l--~~~~~~LVFv~ 1582 (2114)
...+....+. ... ..+.++||||+
T Consensus 319 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~ 398 (556)
T 4a2p_A 319 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 398 (556)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEES
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEc
Confidence 0001111111 221 45689999999
Q ss_pred ChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhc-CCce
Q 000129 1583 SRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA-GKIK 1661 (2114)
Q Consensus 1583 sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~-g~i~ 1661 (2114)
++..+..++..|............ ...+.+...+||+|+..+|..+++.|++ |.++
T Consensus 399 ~~~~~~~l~~~L~~~~~~~~~~~~-----------------------~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~ 455 (556)
T 4a2p_A 399 TRALVSALKKCMEENPILNYIKPG-----------------------VLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR 455 (556)
T ss_dssp SHHHHHHHHHHHTTCSGGGSCCEE-----------------------C------------------------------CC
T ss_pred cHHHHHHHHHHHHhCCCcceeeee-----------------------EEEccCCcccccccCHHHHHHHHHHhcccCceE
Confidence 999999999877432110000000 0124456778999999999999999999 9999
Q ss_pred EEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcH
Q 000129 1662 VCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRK 1730 (2114)
Q Consensus 1662 VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~ 1730 (2114)
|||||+++++|+|+|++.+|| +++.|.++..|+||+|| ||. ..|.|++++...+.
T Consensus 456 vLvaT~~~~~GiDip~v~~VI----------~~d~p~s~~~~~Qr~GR-gR~---~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 456 LLIATSVADEGIDIVQCNLVV----------LYEYSGNVTKMIQVRGR-GRA---AGSKCILVTSKTEV 510 (556)
T ss_dssp EEEEEC-----------CEEE----------EETCCSCHHHHHHC------------CCEEEEESCHHH
T ss_pred EEEEcCchhcCCCchhCCEEE----------EeCCCCCHHHHHHhcCC-CCC---CCceEEEEEeCcch
Confidence 999999999999999999999 89999999999999999 994 78999999887654
No 59
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=4.2e-33 Score=370.50 Aligned_cols=345 Identities=19% Similarity=0.216 Sum_probs=214.3
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
+|+|+|.++++.++.+ .+++++||||||||++|++|+++.+...... .+.++||++|+++|+.|+++.|.+++
T Consensus 4 ~~~~~Q~~~i~~~~~~-~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~------~~~~~lil~P~~~L~~q~~~~~~~~~ 76 (555)
T 3tbk_A 4 KPRNYQLELALPAKKG-KNTIICAPTGCGKTFVSLLICEHHLKKFPCG------QKGKVVFFANQIPVYEQQATVFSRYF 76 (555)
T ss_dssp CCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHTCCSS------CCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCC-CCEEEEeCCCChHHHHHHHHHHHHHHhcccC------CCCEEEEEeCCHHHHHHHHHHHHHHh
Confidence 6999999999998876 5699999999999999999999998765321 24589999999999999999999999
Q ss_pred ccCCcEEEEEeCCCccChh---hhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHH
Q 000129 575 QMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTV 651 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~---~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~ 651 (2114)
...++++..++|+.....+ ....++|+|+||+++....+... ...+.++++|||||||++.+.. + +..++.+.+
T Consensus 77 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~-~~~~~~~~~vViDEah~~~~~~-~-~~~~~~~~~ 153 (555)
T 3tbk_A 77 ERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGA-IPSLSVFTLMIFDECHNTSKNH-P-YNQIMFRYL 153 (555)
T ss_dssp HTTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSS-SCCGGGCSEEEETTGGGCSTTC-H-HHHHHHHHH
T ss_pred ccCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCc-ccccccCCEEEEECccccCCcc-h-HHHHHHHHH
Confidence 8889999999999865432 24578999999999844443321 1257889999999999997643 3 666655544
Q ss_pred HHHhh--ccccccEEEEccccCCh--HH----------HHHHHhccccCceEeecC-------CcccccceeEEEeecc-
Q 000129 652 RQIET--TKEHIRLVGLSATLPNY--ED----------VALFLRVNLEKGLFYFDN-------SYRPVPLSQQYIGIQV- 709 (2114)
Q Consensus 652 ~~~~~--~~~~~riv~lSATlpn~--~d----------va~~l~~~~~~~~~~f~~-------~~rpv~l~~~~~~~~~- 709 (2114)
..... .....++++||||+++. .+ +..++... .+.... .+.+.+... +..+..
T Consensus 154 ~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~ 228 (555)
T 3tbk_A 154 DHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDAS----VIATVRDNVAELEQVVYKPQKI-SRKVASR 228 (555)
T ss_dssp HHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCS----EEECCCSCHHHHHTTCCCCCEE-EEECCCC
T ss_pred HhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCe----eeeccccCHHHHHhhcCCCceE-EEEecCc
Confidence 32211 12568999999998542 11 22222211 111000 000111100 000000
Q ss_pred -CchhH---------------------------------------HH---------------------------------
Q 000129 710 -KKPLQ---------------------------------------RF--------------------------------- 716 (2114)
Q Consensus 710 -~~~~~---------------------------------------~~--------------------------------- 716 (2114)
..... ..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 308 (555)
T 3tbk_A 229 TSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLR 308 (555)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHH
Confidence 00000 00
Q ss_pred -------------------------------------------------------------HHhhHHHHHHHHH---HhC
Q 000129 717 -------------------------------------------------------------QLMNDLCYEKVVA---VAG 732 (2114)
Q Consensus 717 -------------------------------------------------------------~~~~~~~~~~i~~---~~~ 732 (2114)
..-...+.+.+.+ ...
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~ 388 (555)
T 3tbk_A 309 KYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKP 388 (555)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCC
Confidence 0000001111111 123
Q ss_pred CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHH
Q 000129 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (2114)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v 812 (2114)
.+++||||+++..+..++..|...+...... ...+...+...+||+|+..+|..+
T Consensus 389 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~-------------------------~~~~~g~~~~~~~~~~~~~~R~~~ 443 (555)
T 3tbk_A 389 ETKTILFVKTRALVDALKKWIEENPALSFLK-------------------------PGILTGRGRTNRATGMTLPAQKCV 443 (555)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHCGGGTTCC-------------------------EEECCC------------------
T ss_pred CceEEEEeCcHHHHHHHHHHHhhCcCcCcee-------------------------eeEEEecCCcccccccCHHHHHHH
Confidence 5899999999999999999998754211100 011223466778999999999999
Q ss_pred HHHHhC-CCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcH
Q 000129 813 EDLFGD-GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891 (2114)
Q Consensus 813 ~~~F~~-g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~ 891 (2114)
++.|++ |.++|||||+++++|||+|++++||+++.++++. +|+||+|| ||. ..|.++++++..+.
T Consensus 444 ~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~----------~~~Qr~GR-gR~---~~g~~~~l~~~~~~ 509 (555)
T 3tbk_A 444 LEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVI----------KMIQTRGR-GRA---RDSKCFLLTSSADV 509 (555)
T ss_dssp --------CCSEEEECCCTTCCEETTSCSEEEEESCCSSCC----------CEECSSCC-CTT---TSCEEEEEESCHHH
T ss_pred HHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCCCHH----------HHHHhcCc-CcC---CCceEEEEEcCCCH
Confidence 999999 9999999999999999999999999966655554 59999999 885 67999999988765
Q ss_pred HH
Q 000129 892 RY 893 (2114)
Q Consensus 892 ~~ 893 (2114)
..
T Consensus 510 ~~ 511 (555)
T 3tbk_A 510 IE 511 (555)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 60
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=3.5e-32 Score=361.58 Aligned_cols=346 Identities=18% Similarity=0.207 Sum_probs=215.9
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.|+|+|.++++.++++ .++++++|||||||++|.+|+++.+.......+.++|||+|+++|+.|+++.|++.+.. .++
T Consensus 4 ~~~~~Q~~~i~~~~~~-~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~ 81 (555)
T 3tbk_A 4 KPRNYQLELALPAKKG-KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFER-LGY 81 (555)
T ss_dssp CCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT-TTC
T ss_pred CCcHHHHHHHHHHhCC-CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhcc-CCc
Confidence 6999999999999875 56999999999999999999999888743222348999999999999999999965544 488
Q ss_pred EEEEEcCCcccch---hhccCCcEEEEChhhHHHHHhhhcccc-cccceeEEEecccccccCCCCchHHHHHHHHHHHH-
Q 000129 1421 RVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRK-YVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIA- 1495 (2114)
Q Consensus 1421 ~v~~l~G~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~-~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~- 1495 (2114)
++..++|+..... .....++|+|+||+++..++.. ... .+.++++||+||||++.+.. .+..++.+.....
T Consensus 82 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~~vViDEah~~~~~~--~~~~~~~~~~~~~~ 157 (555)
T 3tbk_A 82 NIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNN--GAIPSLSVFTLMIFDECHNTSKNH--PYNQIMFRYLDHKL 157 (555)
T ss_dssp CEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHT--SSSCCGGGCSEEEETTGGGCSTTC--HHHHHHHHHHHHHT
T ss_pred EEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhc--CcccccccCCEEEEECccccCCcc--hHHHHHHHHHHhhh
Confidence 9999999986542 2334679999999999887765 222 57889999999999997644 2555553332221
Q ss_pred h-hcCCCceEEEEcccCCChh------------HHHHHhcCCCCceeecCC-------CCCccCcEEEEecc--cccchH
Q 000129 1496 S-QVENKIRIVALSTSLANAK------------DLGEWIGATSHGLFNFPP-------GVRPVPLEIHIQGV--DITNFE 1553 (2114)
Q Consensus 1496 ~-~~~~~~riV~lSATl~n~~------------dla~wl~~~~~~~~~f~~-------~~rpv~l~~~~~~~--~~~~~~ 1553 (2114)
. ......++++||||+++.. ++..+++... +.... .+...|........ ....+.
T Consensus 158 ~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 234 (555)
T 3tbk_A 158 GESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASV---IATVRDNVAELEQVVYKPQKISRKVASRTSNTFK 234 (555)
T ss_dssp SSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSE---EECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHH
T ss_pred ccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCee---eeccccCHHHHHhhcCCCceEEEEecCcccChHH
Confidence 1 1125689999999996531 2334444221 11000 00011111111000 000000
Q ss_pred H--------------------------------------HHHh-------------------------------------
Q 000129 1554 A--------------------------------------RMQA------------------------------------- 1558 (2114)
Q Consensus 1554 ~--------------------------------------~~~~------------------------------------- 1558 (2114)
. ....
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 314 (555)
T 3tbk_A 235 CIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDAL 314 (555)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000
Q ss_pred -----------------------------------------------------cCHHHHHHHH----HHh--cCCCCEEE
Q 000129 1559 -----------------------------------------------------MTKPTFTAIV----QHA--KNEKPALV 1579 (2114)
Q Consensus 1559 -----------------------------------------------------~~~~~~~~i~----~~l--~~~~~~LV 1579 (2114)
........+. ... ..++++||
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lV 394 (555)
T 3tbk_A 315 IISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTIL 394 (555)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred hhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEE
Confidence 0001111111 111 24589999
Q ss_pred EeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhc-C
Q 000129 1580 FVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA-G 1658 (2114)
Q Consensus 1580 Fv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~-g 1658 (2114)
||+++..+..++..|............ . ..+.+...+||+|++.+|..+++.|++ |
T Consensus 395 F~~~~~~~~~l~~~L~~~~~~~~~~~~-~----------------------~~g~~~~~~~~~~~~~~R~~~~~~F~~~g 451 (555)
T 3tbk_A 395 FVKTRALVDALKKWIEENPALSFLKPG-I----------------------LTGRGRTNRATGMTLPAQKCVLEAFRASG 451 (555)
T ss_dssp ECSSHHHHHHHHHHHHHCGGGTTCCEE-E----------------------CCC--------------------------
T ss_pred EeCcHHHHHHHHHHHhhCcCcCceeee-E----------------------EEecCCcccccccCHHHHHHHHHHHhcCC
Confidence 999999999999888653211100000 0 123456678899999999999999999 9
Q ss_pred CceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHH
Q 000129 1659 KIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEY 1732 (2114)
Q Consensus 1659 ~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~ 1732 (2114)
.++|||||+++++|+|+|++.+|| +++.|.++.+|+||+|| ||. ..|.|++|+...+.+.
T Consensus 452 ~~~vLvaT~~~~~GlDlp~v~~VI----------~~d~p~s~~~~~Qr~GR-gR~---~~g~~~~l~~~~~~~~ 511 (555)
T 3tbk_A 452 DNNILIATSVADEGIDIAECNLVI----------LYEYVGNVIKMIQTRGR-GRA---RDSKCFLLTSSADVIE 511 (555)
T ss_dssp CCSEEEECCCTTCCEETTSCSEEE----------EESCCSSCCCEECSSCC-CTT---TSCEEEEEESCHHHHH
T ss_pred CeeEEEEcchhhcCCccccCCEEE----------EeCCCCCHHHHHHhcCc-CcC---CCceEEEEEcCCCHHH
Confidence 999999999999999999999999 88999999999999999 884 7899999998765543
No 61
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=4.9e-32 Score=370.08 Aligned_cols=353 Identities=19% Similarity=0.232 Sum_probs=198.2
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.|+.+|+++|.++++.++.+ .|+|++||||+|||++|++++++.+...... .+.++||++|+++|+.|+.+.+
T Consensus 9 ~g~~~lr~~Q~~~i~~~l~g-~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~------~~~~~lvl~Pt~~L~~Q~~~~~ 81 (696)
T 2ykg_A 9 YSPFKPRNYQLELALPAMKG-KNTIICAPTGCGKTFVSLLICEHHLKKFPQG------QKGKVVFFANQIPVYEQNKSVF 81 (696)
T ss_dssp TC--CCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHHHHSCTT------CCCCEEEECSSHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHHHHHHHHHhCccC------CCCeEEEEECCHHHHHHHHHHH
Confidence 48899999999999998875 5699999999999999999999988764321 2248999999999999999999
Q ss_pred HHhhccCCcEEEEEeCCCccChh---hhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHH
Q 000129 571 SNRLQMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIV 647 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~---~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv 647 (2114)
.+++...|+++..++|+.....+ ....++|+|+||+++........ ...+..+++|||||||++.+.. .+..++
T Consensus 82 ~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~-~~~l~~~~~vViDEaH~~~~~~--~~~~i~ 158 (696)
T 2ykg_A 82 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT-IPSLSIFTLMIFDECHNTSKQH--PYNMIM 158 (696)
T ss_dssp HHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTS-SCCGGGCSEEEEETGGGCSTTC--HHHHHH
T ss_pred HHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCc-ccccccccEEEEeCCCcccCcc--cHHHHH
Confidence 99988789999999998765432 23578999999999743333221 1257889999999999987533 355555
Q ss_pred HHHHHHH--hhccccccEEEEccccCC------hHHHHHHHhcc--ccCceEeecCC---------cccccc------ee
Q 000129 648 ARTVRQI--ETTKEHIRLVGLSATLPN------YEDVALFLRVN--LEKGLFYFDNS---------YRPVPL------SQ 702 (2114)
Q Consensus 648 ~rl~~~~--~~~~~~~riv~lSATlpn------~~dva~~l~~~--~~~~~~~f~~~---------~rpv~l------~~ 702 (2114)
.+++... .......++++||||+.+ .+.+...+... .....+..... +.|... .+
T Consensus 159 ~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~ 238 (696)
T 2ykg_A 159 FNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRI 238 (696)
T ss_dssp HHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCS
T ss_pred HHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCccc
Confidence 4443321 112467899999999752 12222221110 00000000000 000000 00
Q ss_pred --------------------EE---------------------------------EeeccC-------------------
Q 000129 703 --------------------QY---------------------------------IGIQVK------------------- 710 (2114)
Q Consensus 703 --------------------~~---------------------------------~~~~~~------------------- 710 (2114)
.+ ......
T Consensus 239 ~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 318 (696)
T 2ykg_A 239 SDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRK 318 (696)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHH
Confidence 00 000000
Q ss_pred --------------------------------chhH-HHH---------------------HhhHHHHHHHHHHh---CC
Q 000129 711 --------------------------------KPLQ-RFQ---------------------LMNDLCYEKVVAVA---GK 733 (2114)
Q Consensus 711 --------------------------------~~~~-~~~---------------------~~~~~~~~~i~~~~---~~ 733 (2114)
.... .+. .....+.+.+.+.. .+
T Consensus 319 ~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~ 398 (696)
T 2ykg_A 319 YNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPE 398 (696)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTT
T ss_pred HhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCC
Confidence 0000 000 00011122222221 46
Q ss_pred CeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHH
Q 000129 734 HQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVE 813 (2114)
Q Consensus 734 ~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~ 813 (2114)
+++||||+++..+..++..|...+.... + ....+...|...+||+|+..+|..++
T Consensus 399 ~~~IIF~~~~~~~~~l~~~L~~~~~~~~-~------------------------~~~~l~G~~~~~~h~~~~~~eR~~v~ 453 (696)
T 2ykg_A 399 TITILFVKTRALVDALKNWIEGNPKLSF-L------------------------KPGILTGRGKTNQNTGMTLPAQKCIL 453 (696)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHCTTCCS-C------------------------CEEC----------------------
T ss_pred CcEEEEeCcHHHHHHHHHHHHhCCCccc-c------------------------ceeEEEccCCCccccCCCHHHHHHHH
Confidence 7999999999999999999987541100 0 00012234455669999999999999
Q ss_pred HHHhC-CCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcHH
Q 000129 814 DLFGD-GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR 892 (2114)
Q Consensus 814 ~~F~~-g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~ 892 (2114)
+.|++ |.++|||||+++++|||+|++++||+++.+.+ ..+|+||+|| ||. ..|.++++++..+..
T Consensus 454 ~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s----------~~~~~Qr~GR-GR~---~~g~~~~l~~~~~~~ 519 (696)
T 2ykg_A 454 DAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN----------VIKMIQTRGR-GRA---RGSKCFLLTSNAGVI 519 (696)
T ss_dssp -------CCSCSEEEESSCCC---CCCSEEEEESCC------------CCCC-------------CCCEEEEEESCHHHH
T ss_pred HHHHhcCCccEEEEechhhcCCcCccCCEEEEeCCCCC----------HHHHHHhhcc-CcC---CCceEEEEecCCCHH
Confidence 99998 99999999999999999999999999555444 4459999999 995 579999999886653
No 62
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.9e-31 Score=367.67 Aligned_cols=348 Identities=19% Similarity=0.245 Sum_probs=198.7
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
|+..|+|+|.++++.++++ .|+++++|||||||++|.+|+++.+.......+.++|||+|+++|+.|+++.|++.+..
T Consensus 245 g~~~l~~~Q~~~i~~~l~~-~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~- 322 (797)
T 4a2q_A 245 ETKKARSYQIELAQPAING-KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER- 322 (797)
T ss_dssp ---CCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG-
T ss_pred CCCCCCHHHHHHHHHHHhC-CCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc-
Confidence 4789999999999999875 56999999999999999999999988743222348999999999999999999965543
Q ss_pred CCcEEEEEcCCcccch---hhccCCcEEEEChhhHHHHHhhhcccc-cccceeEEEecccccccCCCCchHHHHHHHHHH
Q 000129 1418 LGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRK-YVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRY 1493 (2114)
Q Consensus 1418 ~g~~v~~l~G~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~-~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~ 1493 (2114)
.+++++.++|+..... .....++|+|+||+++...+++ ... .+.++++|||||||++.+.. .+..++.++..
T Consensus 323 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~--~~~~~~~~~~~iViDEaH~~~~~~--~~~~i~~~~~~ 398 (797)
T 4a2q_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED--GTLTSLSIFTLMIFDECHNTTGNH--PYNVLMTRYLE 398 (797)
T ss_dssp GTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHS--SSCCCGGGCSEEEETTGGGCSTTS--HHHHHHHHHHH
T ss_pred CCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHh--ccccccccCCEEEEECccccCCCc--cHHHHHHHHHH
Confidence 4889999999886542 3345779999999999887764 223 57889999999999987543 35555544332
Q ss_pred H-HhhcCCCceEEEEcccCCC--hh----------HHHHHhcCCCCceeecCC--------CCCccCcEEEEec------
Q 000129 1494 I-ASQVENKIRIVALSTSLAN--AK----------DLGEWIGATSHGLFNFPP--------GVRPVPLEIHIQG------ 1546 (2114)
Q Consensus 1494 i-~~~~~~~~riV~lSATl~n--~~----------dla~wl~~~~~~~~~f~~--------~~rpv~l~~~~~~------ 1546 (2114)
. ........++++||||+.. .. .+...++... +..... ..+|......+..
T Consensus 399 ~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~--i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 476 (797)
T 4a2q_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQA--ISTVRENIQELQRFMNKPEIDVRLVKRRIHNPF 476 (797)
T ss_dssp HHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSE--EECCCTTHHHHHHHSCCCCCEEEECCCCSCCHH
T ss_pred HhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcE--EecccccHHHHHHhcCCCceEEEecCCCCCcHH
Confidence 2 1122456899999999953 11 2333333211 000000 0011111111000
Q ss_pred -------------------------------ccccchHHHHHh-------------------------------------
Q 000129 1547 -------------------------------VDITNFEARMQA------------------------------------- 1558 (2114)
Q Consensus 1547 -------------------------------~~~~~~~~~~~~------------------------------------- 1558 (2114)
+....+......
T Consensus 477 ~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 556 (797)
T 4a2q_A 477 AAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDAL 556 (797)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 000000000000
Q ss_pred -----------------------------------------------------cCHHHHH----HHHHHh--cCCCCEEE
Q 000129 1559 -----------------------------------------------------MTKPTFT----AIVQHA--KNEKPALV 1579 (2114)
Q Consensus 1559 -----------------------------------------------------~~~~~~~----~i~~~l--~~~~~~LV 1579 (2114)
...+... .+.... ..+.++||
T Consensus 557 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLI 636 (797)
T 4a2q_A 557 IISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLL 636 (797)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEE
T ss_pred hhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEE
Confidence 0000111 111111 45688999
Q ss_pred EeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhc-C
Q 000129 1580 FVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA-G 1658 (2114)
Q Consensus 1580 Fv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~-g 1658 (2114)
||+++..+..++..|............ ...+.+...+||+|+..+|..+++.|++ |
T Consensus 637 F~~~~~~~~~L~~~L~~~~~~~~~~~~-----------------------~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g 693 (797)
T 4a2q_A 637 FAKTRALVSALKKCMEENPILNYIKPG-----------------------VLMGRGRRDQTTGMTLPSQKGVLDAFKTSK 693 (797)
T ss_dssp EESSHHHHHHHHHHHHTCSTTCSCCCE-----------------------EC----------------------------
T ss_pred EECcHHHHHHHHHHHHhCcccccccce-----------------------EEEecCCcccCCCCCHHHHHHHHHHhhccC
Confidence 999999999999887542111110000 0124456778999999999999999999 9
Q ss_pred CceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcH
Q 000129 1659 KIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRK 1730 (2114)
Q Consensus 1659 ~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~ 1730 (2114)
.++|||||+++++|||+|++.+|| +++.|.++..|+||+|| ||. ..|.|++|+...+.
T Consensus 694 ~~~vLVaT~~~~~GIDlp~v~~VI----------~yd~p~s~~~~iQr~GR-GR~---~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 694 DNRLLIATSVADEGIDIVQCNLVV----------LYEYSGNVTKMIQVRGR-GRA---AGSKCILVTSKTEV 751 (797)
T ss_dssp CCSEEEEECC-------CCCSEEE----------EESCCSCHHHHHTC-----------CCCEEEEECCHHH
T ss_pred CceEEEEcCchhcCCCchhCCEEE----------EeCCCCCHHHHHHhcCC-CCC---CCceEEEEEeCCcH
Confidence 999999999999999999999999 88999999999999999 994 78999999977654
No 63
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.98 E-value=4.5e-32 Score=373.81 Aligned_cols=345 Identities=19% Similarity=0.297 Sum_probs=196.8
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.|+..|+|+|.++++.++.+ .++|++||||||||++|++|+++.+...... .+.++|||+|+++|+.|+++.|
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~-~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~------~~~~~Lvl~Pt~~L~~Q~~~~~ 316 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAING-KNALICAPTGSGKTFVSILICEHHFQNMPAG------RKAKVVFLATKVPVYEQQKNVF 316 (797)
T ss_dssp ----CCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHTCCSS------CCCCEEEECSSHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHhC-CCEEEEeCCCChHHHHHHHHHHHHHHhcccc------CCCeEEEEeCCHHHHHHHHHHH
Confidence 47889999999999998876 5699999999999999999999998765321 2458999999999999999999
Q ss_pred HHhhccCCcEEEEEeCCCccChh---hhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHH
Q 000129 571 SNRLQMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIV 647 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~---~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv 647 (2114)
++++...++++..++|+.....+ ....++|+|+||+++....+.. ....+.++++|||||||++.+.. + +..++
T Consensus 317 ~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~-~~~~~~~~~~iViDEaH~~~~~~-~-~~~i~ 393 (797)
T 4a2q_A 317 KHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDG-TLTSLSIFTLMIFDECHNTTGNH-P-YNVLM 393 (797)
T ss_dssp HHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSS-SCCCGGGCSEEEETTGGGCSTTS-H-HHHHH
T ss_pred HHhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhc-cccccccCCEEEEECccccCCCc-c-HHHHH
Confidence 99998889999999999865432 3457899999999974433332 11267889999999999987632 2 66666
Q ss_pred HHHHHHH-hhccccccEEEEccccCC--hH-------H---HHHHHhccccCceEeecCC---------cccccceeEEE
Q 000129 648 ARTVRQI-ETTKEHIRLVGLSATLPN--YE-------D---VALFLRVNLEKGLFYFDNS---------YRPVPLSQQYI 705 (2114)
Q Consensus 648 ~rl~~~~-~~~~~~~riv~lSATlpn--~~-------d---va~~l~~~~~~~~~~f~~~---------~rpv~l~~~~~ 705 (2114)
.+..... ....+..++++||||++. .. . +...++.. .+..... .+|.. .+.
T Consensus 394 ~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~----~i~~~~~~~~~l~~~~~~~~~---~~~ 466 (797)
T 4a2q_A 394 TRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQ----AISTVRENIQELQRFMNKPEI---DVR 466 (797)
T ss_dssp HHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCS----EEECCCTTHHHHHHHSCCCCC---EEE
T ss_pred HHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCc----EEecccccHHHHHHhcCCCce---EEE
Confidence 5554322 222556899999999742 11 1 12222210 0000000 00100 000
Q ss_pred eecc-----------------------------------------------------------Cch-------------h
Q 000129 706 GIQV-----------------------------------------------------------KKP-------------L 713 (2114)
Q Consensus 706 ~~~~-----------------------------------------------------------~~~-------------~ 713 (2114)
.+.. ... .
T Consensus 467 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 546 (797)
T 4a2q_A 467 LVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICT 546 (797)
T ss_dssp ECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHH
T ss_pred ecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 0000 000 0
Q ss_pred HH-------------------HHHh-------------------------------------------hHHHHHHHHH--
Q 000129 714 QR-------------------FQLM-------------------------------------------NDLCYEKVVA-- 729 (2114)
Q Consensus 714 ~~-------------------~~~~-------------------------------------------~~~~~~~i~~-- 729 (2114)
.. ...+ ...+.+.+.+
T Consensus 547 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~ 626 (797)
T 4a2q_A 547 EHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAY 626 (797)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHh
Confidence 00 0000 0001111111
Q ss_pred -HhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHH
Q 000129 730 -VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGD 808 (2114)
Q Consensus 730 -~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~ 808 (2114)
...++++||||++++.+..++..|....... .+ ....+...+...+||+|+..+
T Consensus 627 ~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~-----~~--------------------~~~~l~G~~~~~~hg~~~~~e 681 (797)
T 4a2q_A 627 RYNPQTRTLLFAKTRALVSALKKCMEENPILN-----YI--------------------KPGVLMGRGRRDQTTGMTLPS 681 (797)
T ss_dssp HHCSSCCEEEEESSHHHHHHHHHHHHTCSTTC-----SC--------------------CCEEC----------------
T ss_pred ccCCCCeEEEEECcHHHHHHHHHHHHhCcccc-----cc--------------------cceEEEecCCcccCCCCCHHH
Confidence 1336799999999999999999887531000 00 001123455667799999999
Q ss_pred HHHHHHHHhC-CCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcC
Q 000129 809 RQLVEDLFGD-GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITG 887 (2114)
Q Consensus 809 R~~v~~~F~~-g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~ 887 (2114)
|..+++.|++ |.++|||||+++++|||+|++++||+ ||++. ++..|+||+|| ||. ..|.++++++
T Consensus 682 R~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~----yd~p~------s~~~~iQr~GR-GR~---~~g~~i~l~~ 747 (797)
T 4a2q_A 682 QKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL----YEYSG------NVTKMIQVRGR-GRA---AGSKCILVTS 747 (797)
T ss_dssp ------------CCSEEEEECC-------CCCSEEEE----ESCCS------CHHHHHTC-----------CCCEEEEEC
T ss_pred HHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEE----eCCCC------CHHHHHHhcCC-CCC---CCceEEEEEe
Confidence 9999999999 99999999999999999999999999 77765 78899999999 996 6799999998
Q ss_pred CCcH
Q 000129 888 HSEL 891 (2114)
Q Consensus 888 ~~e~ 891 (2114)
..+.
T Consensus 748 ~~~~ 751 (797)
T 4a2q_A 748 KTEV 751 (797)
T ss_dssp CHHH
T ss_pred CCcH
Confidence 8654
No 64
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.98 E-value=1e-31 Score=366.92 Aligned_cols=351 Identities=17% Similarity=0.183 Sum_probs=199.2
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
||..|+|+|.++++.++.+ .|+++++|||||||++|.+++++.+.......+.++|||+||++|+.|+++.+++ +...
T Consensus 10 g~~~lr~~Q~~~i~~~l~g-~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~-~~~~ 87 (696)
T 2ykg_A 10 SPFKPRNYQLELALPAMKG-KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSK-YFER 87 (696)
T ss_dssp C--CCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHH-HTTT
T ss_pred CCCCccHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHH-Hhcc
Confidence 6889999999999999874 5699999999999999999999988763322223899999999999999999995 4444
Q ss_pred CCcEEEEEcCCcccc---hhhccCCcEEEEChhhHHHHHhhhcccc-cccceeEEEecccccccCCCCchHHHHHHHHHH
Q 000129 1418 LGMRVVELTGETAMD---LKLLEKGQIIISTPEKWDALSRRWKQRK-YVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRY 1493 (2114)
Q Consensus 1418 ~g~~v~~l~G~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~~~~~-~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~ 1493 (2114)
.++++..++|+.... ......++|+|+||+++...+.+ ... .+.++++||+||||++.+.. .+..++.++..
T Consensus 88 ~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~--~~~~~l~~~~~vViDEaH~~~~~~--~~~~i~~~~l~ 163 (696)
T 2ykg_A 88 HGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK--GTIPSLSIFTLMIFDECHNTSKQH--PYNMIMFNYLD 163 (696)
T ss_dssp TTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHT--TSSCCGGGCSEEEEETGGGCSTTC--HHHHHHHHHHH
T ss_pred CCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhc--CcccccccccEEEEeCCCcccCcc--cHHHHHHHHHH
Confidence 588999999987543 22335679999999999887765 222 57889999999999997543 45444433322
Q ss_pred H--HhhcCCCceEEEEcccCCC---------hhHHHHHhcCCCCceeecCCCC-------CccCcEEEEe--cccc----
Q 000129 1494 I--ASQVENKIRIVALSTSLAN---------AKDLGEWIGATSHGLFNFPPGV-------RPVPLEIHIQ--GVDI---- 1549 (2114)
Q Consensus 1494 i--~~~~~~~~riV~lSATl~n---------~~dla~wl~~~~~~~~~f~~~~-------rpv~l~~~~~--~~~~---- 1549 (2114)
. ........++|+||||+.+ ...+...+.......+...... ...|...... ....
T Consensus 164 ~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs 243 (696)
T 2ykg_A 164 QKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFK 243 (696)
T ss_dssp HHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHH
T ss_pred HhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHH
Confidence 1 1122467899999999973 1122222211111111000000 0000000000 0000
Q ss_pred --------------------------------------------------------------------------------
Q 000129 1550 -------------------------------------------------------------------------------- 1549 (2114)
Q Consensus 1550 -------------------------------------------------------------------------------- 1549 (2114)
T Consensus 244 ~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 323 (696)
T 2ykg_A 244 YIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDAL 323 (696)
T ss_dssp HHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHH
Confidence
Q ss_pred ---------------------------cchHHHHHh-----------------cCHHHHHHH---HHHh---cCCCCEEE
Q 000129 1550 ---------------------------TNFEARMQA-----------------MTKPTFTAI---VQHA---KNEKPALV 1579 (2114)
Q Consensus 1550 ---------------------------~~~~~~~~~-----------------~~~~~~~~i---~~~l---~~~~~~LV 1579 (2114)
......+.. ........+ +... .+++++||
T Consensus 324 ~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~II 403 (696)
T 2ykg_A 324 IISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 403 (696)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEE
T ss_pred hccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEE
Confidence 000000000 011111111 1111 25678999
Q ss_pred EeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhc-C
Q 000129 1580 FVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA-G 1658 (2114)
Q Consensus 1580 Fv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~-g 1658 (2114)
||+++..|..++..|........-... ...+.|...+||+|+..+|..+++.|++ |
T Consensus 404 F~~~~~~~~~l~~~L~~~~~~~~~~~~-----------------------~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g 460 (696)
T 2ykg_A 404 FVKTRALVDALKNWIEGNPKLSFLKPG-----------------------ILTGRGKTNQNTGMTLPAQKCILDAFKASG 460 (696)
T ss_dssp ECSCHHHHHHHHHHHHHCTTCCSCCEE-----------------------C-----------------------------
T ss_pred EeCcHHHHHHHHHHHHhCCCcccccee-----------------------EEEccCCCccccCCCHHHHHHHHHHHHhcC
Confidence 999999999999888653210000000 0112344455889999999999999998 9
Q ss_pred CceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHH
Q 000129 1659 KIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE 1731 (2114)
Q Consensus 1659 ~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~ 1731 (2114)
.++|||||+++++|||+|++.+|| +++.|.+..+|+||+|| ||. ..|.|++++...+..
T Consensus 461 ~~~vLVaT~v~~~GiDip~v~~VI----------~~d~p~s~~~~~Qr~GR-GR~---~~g~~~~l~~~~~~~ 519 (696)
T 2ykg_A 461 DHNILIATSVADEGIDIAQCNLVI----------LYEYVGNVIKMIQTRGR-GRA---RGSKCFLLTSNAGVI 519 (696)
T ss_dssp CCSCSEEEESSCCC---CCCSEEE----------EESCC--CCCC-------------CCCEEEEEESCHHHH
T ss_pred CccEEEEechhhcCCcCccCCEEE----------EeCCCCCHHHHHHhhcc-CcC---CCceEEEEecCCCHH
Confidence 999999999999999999999999 88899999999999999 994 689999999876553
No 65
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.98 E-value=2.5e-32 Score=366.71 Aligned_cols=315 Identities=21% Similarity=0.295 Sum_probs=217.5
Q ss_pred CCCCCCCHHHHHHHHHHHcC-----CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSS-----ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE 565 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~-----~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q 565 (2114)
.+| +||++|.++++.++.+ ..|+|++||||||||++|+++++..+..+ .+++|++||++||.|
T Consensus 365 lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g-----------~qvlvlaPtr~La~Q 432 (780)
T 1gm5_A 365 LPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG-----------FQTAFMVPTSILAIQ 432 (780)
T ss_dssp SSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT-----------SCEEEECSCHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC-----------CeEEEEeCcHHHHHH
Confidence 467 8999999999998764 24799999999999999999999988653 379999999999999
Q ss_pred HHHHHHHhhccCCcEEEEEeCCCccChhh-------hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccC
Q 000129 566 VVGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDN 638 (2114)
Q Consensus 566 ~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~ 638 (2114)
+++.+.+++..+|++|..++|+.....+. ...++|+|+||+.+. . ...+.++++|||||+|+++..
T Consensus 433 ~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~---~----~~~~~~l~lVVIDEaHr~g~~ 505 (780)
T 1gm5_A 433 HYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQ---E----DVHFKNLGLVIIDEQHRFGVK 505 (780)
T ss_dssp HHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHH---H----CCCCSCCCEEEEESCCCC---
T ss_pred HHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh---h----hhhccCCceEEecccchhhHH
Confidence 99999999998899999999998755431 135899999999652 2 145778999999999997532
Q ss_pred -CchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCC-cccccceeEEEeeccCchhHHH
Q 000129 639 -RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNS-YRPVPLSQQYIGIQVKKPLQRF 716 (2114)
Q Consensus 639 -rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~-~rpv~l~~~~~~~~~~~~~~~~ 716 (2114)
+.. +.......++++||||.+ ...++..+..... ....+.. ....++...+ .....
T Consensus 506 qr~~------------l~~~~~~~~vL~mSATp~-p~tl~~~~~g~~~--~s~i~~~p~~r~~i~~~~--~~~~~----- 563 (780)
T 1gm5_A 506 QREA------------LMNKGKMVDTLVMSATPI-PRSMALAFYGDLD--VTVIDEMPPGRKEVQTML--VPMDR----- 563 (780)
T ss_dssp --CC------------CCSSSSCCCEEEEESSCC-CHHHHHHHTCCSS--CEEECCCCSSCCCCEECC--CCSST-----
T ss_pred HHHH------------HHHhCCCCCEEEEeCCCC-HHHHHHHHhCCcc--eeeeeccCCCCcceEEEE--eccch-----
Confidence 211 112345789999999953 3455444322211 1111110 0011222111 11111
Q ss_pred HHhhHHHHHHHHHHh-CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhh-hc-
Q 000129 717 QLMNDLCYEKVVAVA-GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD-LL- 793 (2114)
Q Consensus 717 ~~~~~~~~~~i~~~~-~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~-ll- 793 (2114)
...+++.+.+.. .+++++|||++..+.+.+... ..+.+. ..|.. .+
T Consensus 564 ---~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~--------------------~a~~l~--------~~L~~~~~~ 612 (780)
T 1gm5_A 564 ---VNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVK--------------------SAVEMY--------EYLSKEVFP 612 (780)
T ss_dssp ---HHHHHHHHHHHTTTSCCBCCBCCCC--------C--------------------HHHHHH--------HSGGGSCC-
T ss_pred ---HHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHH--------------------HHHHHH--------HHHHhhhcC
Confidence 112233344333 467999999988765322000 000000 01111 11
Q ss_pred cCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCC
Q 000129 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2114)
Q Consensus 794 ~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2114)
..+++.+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ |+++. .+...|.||+|||||
T Consensus 613 ~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi----~d~~r-----~~l~~l~Qr~GRaGR 683 (780)
T 1gm5_A 613 EFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVI----ENPER-----FGLAQLHQLRGRVGR 683 (780)
T ss_dssp --CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEB----CSCSS-----SCTTHHHHHHHTSCC
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEE----eCCCC-----CCHHHHHHHhcccCc
Confidence 356889999999999999999999999999999999999999999999997 66653 256789999999999
Q ss_pred CCCCCceEEEEEcCC
Q 000129 874 PQYDSYGEGIIITGH 888 (2114)
Q Consensus 874 ~g~d~~G~~iil~~~ 888 (2114)
.| ..|.|++++++
T Consensus 684 ~g--~~g~~ill~~~ 696 (780)
T 1gm5_A 684 GG--QEAYCFLVVGD 696 (780)
T ss_dssp SS--TTCEEECCCCS
T ss_pred CC--CCCEEEEEECC
Confidence 87 67999999874
No 66
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.97 E-value=1e-31 Score=367.13 Aligned_cols=339 Identities=19% Similarity=0.269 Sum_probs=213.7
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH-HHHHHHh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV-VGNLSNR 573 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~-~~~~~~~ 573 (2114)
+|+|+|.++++.++.+ .++|++||||+|||++|++++++.+...... ..+.++|||+|+++|+.|+ ++.|+++
T Consensus 7 ~l~~~Q~~~i~~il~g-~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~-----~~~~~vlvl~P~~~L~~Q~~~~~l~~~ 80 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEG-KNIIICLPTGCGKTRVAVYIAKDHLDKKKKA-----SEPGKVIVLVNKVLLVEQLFRKEFQPF 80 (699)
T ss_dssp CCCHHHHHHHHHHHSS-CCEEECCCTTSCHHHHHHHHHHHHHHHHHHH-----TCCCCBCCEESCSHHHHHHHHHTHHHH
T ss_pred CccHHHHHHHHHHHhC-CCEEEEcCCCCcHHHHHHHHHHHHHHhcccc-----CCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 7999999999999886 4699999999999999999999988765210 0124799999999999999 9999998
Q ss_pred hccCCcEEEEEeCCCccCh---hhhccceEEEcCHhHHHHHH-hcc---CCCcccccccEEEEeccccccc--CCchhHH
Q 000129 574 LQMYDVKVRELSGDQTLTR---QQIEETQIIVTTPEKWDIIT-RKS---GDRTYTQLVKLLIIDEIHLLHD--NRGPVLE 644 (2114)
Q Consensus 574 ~~~~gi~v~~l~Gd~~~~~---~~~~~~~IiV~TPek~d~l~-r~~---~~~~~l~~v~liIiDEaH~l~d--~rg~~le 644 (2114)
+.. ++++..++|+..... .....++|+|+||+++.... +.. .....+..+++|||||||++.. .....+.
T Consensus 81 ~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~ 159 (699)
T 4gl2_A 81 LKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMR 159 (699)
T ss_dssp HTT-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHH
T ss_pred cCc-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHH
Confidence 764 589999999876553 23467999999999974333 211 1234678899999999999854 2333333
Q ss_pred HHHHHHHHHHh------hccccccEEEEccccCCh---------HHHH---HHHhccccCceEeecCC------cccccc
Q 000129 645 SIVARTVRQIE------TTKEHIRLVGLSATLPNY---------EDVA---LFLRVNLEKGLFYFDNS------YRPVPL 700 (2114)
Q Consensus 645 ~iv~rl~~~~~------~~~~~~riv~lSATlpn~---------~dva---~~l~~~~~~~~~~f~~~------~rpv~l 700 (2114)
.++....+... ...+.+++|+||||+++. +++. .++... .+...... +.+.|.
T Consensus 160 ~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~---~i~~~~~~~~~l~~~~~~p~ 236 (699)
T 4gl2_A 160 HYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAF---TIKTVKENLDQLKNQIQEPC 236 (699)
T ss_dssp HHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCS---CCCCCCTTHHHHHHHSCCCE
T ss_pred HHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCC---EEEeecCchHHHhhhcCCCc
Confidence 22222111110 011567999999998751 2222 233220 00000000 000011
Q ss_pred eeEEEeeccCc--hh-HH--------------------------------------------------------------
Q 000129 701 SQQYIGIQVKK--PL-QR-------------------------------------------------------------- 715 (2114)
Q Consensus 701 ~~~~~~~~~~~--~~-~~-------------------------------------------------------------- 715 (2114)
. .+..+.... .. ..
T Consensus 237 ~-~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 315 (699)
T 4gl2_A 237 K-KFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQIND 315 (699)
T ss_dssp E-EEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHH
T ss_pred e-EEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 0 011000000 00 00
Q ss_pred ------------------------------------------HHHh---------------------hHHHHHHHHHH--
Q 000129 716 ------------------------------------------FQLM---------------------NDLCYEKVVAV-- 730 (2114)
Q Consensus 716 ------------------------------------------~~~~---------------------~~~~~~~i~~~-- 730 (2114)
+... ...+.+.+.+.
T Consensus 316 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~ 395 (699)
T 4gl2_A 316 TIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYT 395 (699)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Confidence 0000 00001111111
Q ss_pred -hC-CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCC-----
Q 000129 731 -AG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAG----- 803 (2114)
Q Consensus 731 -~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHag----- 803 (2114)
.+ ++++||||++++.++.++..|.... .+ . .....+..+||+
T Consensus 396 ~~~~~~~~IVF~~s~~~~~~l~~~L~~~~----~l---~------------------------~~g~~~~~lhg~~~~~~ 444 (699)
T 4gl2_A 396 RTEESARGIIFTKTRQSAYALSQWITENE----KF---A------------------------EVGVKAHHLIGAGHSSE 444 (699)
T ss_dssp HSSSCCCEEEECSCHHHHHHHHHHHHSSC----SC---C-----------------------------CEECCCSCCCTT
T ss_pred cCCCCCcEEEEECcHHHHHHHHHHHHhCc----cc---c------------------------ccCcceEEEECCCCccC
Confidence 12 6799999999999999999987530 00 0 011335677888
Q ss_pred ---CCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCce
Q 000129 804 ---MTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYG 880 (2114)
Q Consensus 804 ---l~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G 880 (2114)
|+..+|..+++.|++|.++|||||+++++|||+|++++||+ ||++. |+.+|+||+|||||.| +
T Consensus 445 ~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI~----~d~p~------s~~~~~Qr~GRArr~g----~ 510 (699)
T 4gl2_A 445 FKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIR----YGLVT------NEIAMVQARGRARADE----S 510 (699)
T ss_dssp CCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCCCEE----ESCCC------CHHHHHHHHTTSCSSS----C
T ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCCEEEE----eCCCC------CHHHHHHHcCCCCCCC----c
Confidence 99999999999999999999999999999999999999998 77765 7889999999998854 4
Q ss_pred EEEEEcCCC
Q 000129 881 EGIIITGHS 889 (2114)
Q Consensus 881 ~~iil~~~~ 889 (2114)
.+++++...
T Consensus 511 ~~~l~~~~~ 519 (699)
T 4gl2_A 511 TYVLVAHSG 519 (699)
T ss_dssp EEEEEEESS
T ss_pred eEEEEEeCC
Confidence 455554443
No 67
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.97 E-value=1e-31 Score=360.71 Aligned_cols=320 Identities=19% Similarity=0.293 Sum_probs=223.2
Q ss_pred CCCCCCHHHHHHHHHHHcC-----CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHH
Q 000129 1338 GFKHFNPIQTQVFTVLYNT-----DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEI 1412 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~-----~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~ 1412 (2114)
+| .||++|.++++.++++ ..|++++||||||||++|++|++..+.. +. +++|++||++||.|+++.+++
T Consensus 366 pf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---g~--qvlvlaPtr~La~Q~~~~l~~ 439 (780)
T 1gm5_A 366 PF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---GF--QTAFMVPTSILAIQHYRRTVE 439 (780)
T ss_dssp SS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---TS--CEEEECSCHHHHHHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---CC--eEEEEeCcHHHHHHHHHHHHH
Confidence 47 8999999999998763 2479999999999999999999998865 34 899999999999999999997
Q ss_pred HhcCCCCcEEEEEcCCcccchh-----hcc--CCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHH
Q 000129 1413 KFGQGLGMRVVELTGETAMDLK-----LLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLE 1485 (2114)
Q Consensus 1413 ~f~~~~g~~v~~l~G~~~~~~~-----~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le 1485 (2114)
.+.. .|++++.++|+.+...+ .+. ..+|+|+||+.+.. ...+.++++||+||+|+++...
T Consensus 440 ~~~~-~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-------~~~~~~l~lVVIDEaHr~g~~q----- 506 (780)
T 1gm5_A 440 SFSK-FNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-------DVHFKNLGLVIIDEQHRFGVKQ----- 506 (780)
T ss_dssp HHTC-SSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-------CCCCSCCCEEEEESCCCC---------
T ss_pred Hhhh-cCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-------hhhccCCceEEecccchhhHHH-----
Confidence 6654 48999999998875422 222 36999999987532 3457899999999999975321
Q ss_pred HHHHHHHHHHhhcCCCceEEEEcccCCChhHHH-HHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHH
Q 000129 1486 VIVSRMRYIASQVENKIRIVALSTSLANAKDLG-EWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTF 1564 (2114)
Q Consensus 1486 ~i~srl~~i~~~~~~~~riV~lSATl~n~~dla-~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~ 1564 (2114)
+ ..........++++||||+.. +.++ .+++.....+....+..+. ++...+... .. ....+
T Consensus 507 ----r--~~l~~~~~~~~vL~mSATp~p-~tl~~~~~g~~~~s~i~~~p~~r~-~i~~~~~~~---~~-------~~~l~ 568 (780)
T 1gm5_A 507 ----R--EALMNKGKMVDTLVMSATPIP-RSMALAFYGDLDVTVIDEMPPGRK-EVQTMLVPM---DR-------VNEVY 568 (780)
T ss_dssp -------CCCCSSSSCCCEEEEESSCCC-HHHHHHHTCCSSCEEECCCCSSCC-CCEECCCCS---ST-------HHHHH
T ss_pred ----H--HHHHHhCCCCCEEEEeCCCCH-HHHHHHHhCCcceeeeeccCCCCc-ceEEEEecc---ch-------HHHHH
Confidence 1 111122356899999999754 3333 3344333223322222221 232222111 11 12234
Q ss_pred HHHHHHhcCCCCEEEEeCChHHHHHH----HHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeec
Q 000129 1565 TAIVQHAKNEKPALVFVPSRKYVRLT----AVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLH 1640 (2114)
Q Consensus 1565 ~~i~~~l~~~~~~LVFv~sr~~a~~l----a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H 1640 (2114)
..+...+..+++++|||++...+..+ +..+.. .+... ...+.+|+.+|
T Consensus 569 ~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~-------------------------~L~~~---~~~~~~v~~lH 620 (780)
T 1gm5_A 569 EFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYE-------------------------YLSKE---VFPEFKLGLMH 620 (780)
T ss_dssp HHHHHHTTTSCCBCCBCCCC--------CHHHHHHH-------------------------SGGGS---CC---CBCCCC
T ss_pred HHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHH-------------------------HHHhh---hcCCCcEEEEe
Confidence 55556667789999999987654321 111111 11000 00135799999
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCC-CCHhHHHHhHcccCCCCCCCce
Q 000129 1641 EGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTD-YPVTDLLQMMGHASRPLLDNSG 1719 (2114)
Q Consensus 1641 ~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~-~s~~~~lQr~GRAGR~~~~~~G 1719 (2114)
|+|++.+|..+++.|++|+++|||||+++++|+|+|++++|| +++.| ++.+.|.||+|||||. +..|
T Consensus 621 G~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VI----------i~d~~r~~l~~l~Qr~GRaGR~--g~~g 688 (780)
T 1gm5_A 621 GRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMV----------IENPERFGLAQLHQLRGRVGRG--GQEA 688 (780)
T ss_dssp SSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEE----------BCSCSSSCTTHHHHHHHTSCCS--STTC
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEE----------EeCCCCCCHHHHHHHhcccCcC--CCCC
Confidence 999999999999999999999999999999999999999999 66666 4788999999999998 6789
Q ss_pred EEEEEeecCcHHHHH
Q 000129 1720 KCVILCHAPRKEYYK 1734 (2114)
Q Consensus 1720 ~~iil~~~~~~~~~~ 1734 (2114)
.|++++.+......+
T Consensus 689 ~~ill~~~~~~~~~~ 703 (780)
T 1gm5_A 689 YCFLVVGDVGEEAME 703 (780)
T ss_dssp EEECCCCSCCHHHHH
T ss_pred EEEEEECCCChHHHH
Confidence 999999844444333
No 68
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.97 E-value=1.4e-31 Score=374.74 Aligned_cols=323 Identities=14% Similarity=0.134 Sum_probs=221.8
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
||. | |+|.++++.++.+ +|++++||||||||+ |.+|++..+.. .++ ++|||+||++||.|+++.+++ +...
T Consensus 55 g~~-p-~iQ~~ai~~il~g-~dvlv~apTGSGKTl-~~lp~l~~~~~--~~~--~~lil~PtreLa~Q~~~~l~~-l~~~ 125 (1054)
T 1gku_B 55 GEP-R-AIQKMWAKRILRK-ESFAATAPTGVGKTS-FGLAMSLFLAL--KGK--RCYVIFPTSLLVIQAAETIRK-YAEK 125 (1054)
T ss_dssp CSC-C-HHHHHHHHHHHTT-CCEECCCCBTSCSHH-HHHHHHHHHHT--TSC--CEEEEESCHHHHHHHHHHHHH-HHTT
T ss_pred CCC-H-HHHHHHHHHHHhC-CCEEEEcCCCCCHHH-HHHHHHHHHhh--cCC--eEEEEeccHHHHHHHHHHHHH-HHhh
Confidence 688 9 9999999999975 569999999999998 88888877765 233 899999999999999999995 5444
Q ss_pred CCc----EEEEEcCCcccch-----hhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHH
Q 000129 1418 LGM----RVVELTGETAMDL-----KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 1488 (2114)
Q Consensus 1418 ~g~----~v~~l~G~~~~~~-----~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~ 1488 (2114)
.++ +++.++|+.+... +.+.+++|+|+||+++..++++ ++++++||+||||++.+ .|..++.++
T Consensus 126 ~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~------L~~l~~lViDEah~~l~-~~~~~~~i~ 198 (1054)
T 1gku_B 126 AGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRE------LGHFDFIFVDDVDAILK-ASKNVDKLL 198 (1054)
T ss_dssp TCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTT------SCCCSEEEESCHHHHHT-STHHHHHHH
T ss_pred cCCCccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHH------hccCCEEEEeChhhhhh-ccccHHHHH
Confidence 577 8999999887643 3344589999999998876554 66899999999999887 567777777
Q ss_pred HHHHHHH----hhcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCC-CCccCcEEEEecccccchHHHHHhcCHHH
Q 000129 1489 SRMRYIA----SQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPG-VRPVPLEIHIQGVDITNFEARMQAMTKPT 1563 (2114)
Q Consensus 1489 srl~~i~----~~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~-~rpv~l~~~~~~~~~~~~~~~~~~~~~~~ 1563 (2114)
.++.... ...+...|++++|||+++..+++.++...... +...+. .....+...+.... . . ..
T Consensus 199 ~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~-i~v~~~~~~~~~i~~~~~~~~--k--------~-~~ 266 (1054)
T 1gku_B 199 HLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLN-FDIGSSRITVRNVEDVAVNDE--S--------I-ST 266 (1054)
T ss_dssp HHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHC-CCCSCCEECCCCEEEEEESCC--C--------T-TT
T ss_pred HHhCcchhhhhhhcccCCceEEEEecCCCchhHHHHHhhcceE-EEccCcccCcCCceEEEechh--H--------H-HH
Confidence 7654211 12235678999999998764333322111100 111111 11111222222100 0 0 11
Q ss_pred HHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCC
Q 000129 1564 FTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGL 1643 (2114)
Q Consensus 1564 ~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~l 1643 (2114)
...+... .++++||||+|++.|+.++..|.. . ..+..+||+|
T Consensus 267 L~~ll~~--~~~~~LVF~~t~~~a~~l~~~L~~----------------------------------~--~~v~~lhg~~ 308 (1054)
T 1gku_B 267 LSSILEK--LGTGGIIYARTGEEAEEIYESLKN----------------------------------K--FRIGIVTATK 308 (1054)
T ss_dssp THHHHTT--SCSCEEEEESSHHHHHHHHHTTTT----------------------------------S--SCEEECTTSS
T ss_pred HHHHHhh--cCCCEEEEEcCHHHHHHHHHHHhh----------------------------------c--cCeeEEeccH
Confidence 1122222 267899999999999888855421 0 3589999998
Q ss_pred CHHHHHHHHHHHhcCCceEEEe----cCccccccCCCCc-EEEEEeeeEecCCcCcCCC---------------------
Q 000129 1644 NKTDQEVVSALFEAGKIKVCVM----SSSMCWGVPLTAH-LVVVMGTQYYDGQENAHTD--------------------- 1697 (2114)
Q Consensus 1644 s~~dR~~v~~~F~~g~i~VLVa----T~~la~Gvdip~~-~vVI~gt~~yd~~~~~~~~--------------------- 1697 (2114)
..+++.|++|+++|||| |+++++|||+|++ .+|| +++.|
T Consensus 309 -----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI----------~~~~P~~~~~~~~~~~~~~~~~~~~~ 373 (1054)
T 1gku_B 309 -----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAV----------FVGCPSFRVTIEDIDSLSPQMVKLLA 373 (1054)
T ss_dssp -----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEE----------EESCCEEEEECSCGGGSCHHHHHHHH
T ss_pred -----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEE----------EeCCCcccccccccccChHHHHHHHH
Confidence 37889999999999999 9999999999995 8887 44444
Q ss_pred --------------------------------------------------CCHhHHHHhHcccCCCCCCCceEEEEEeec
Q 000129 1698 --------------------------------------------------YPVTDLLQMMGHASRPLLDNSGKCVILCHA 1727 (2114)
Q Consensus 1698 --------------------------------------------------~s~~~~lQr~GRAGR~~~~~~G~~iil~~~ 1727 (2114)
.+..+|+||+|||||.|.+..+.++.++..
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~ 453 (1054)
T 1gku_B 374 YLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLE 453 (1054)
T ss_dssp TTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEe
Confidence 489999999999999753433235555555
Q ss_pred CcHHHHHHHHHhcc
Q 000129 1728 PRKEYYKKFLRLTQ 1741 (2114)
Q Consensus 1728 ~~~~~~~~~lRl~~ 1741 (2114)
.+...++.+.+.++
T Consensus 454 ~d~~~~~~l~~~l~ 467 (1054)
T 1gku_B 454 DDSELLSAFIERAK 467 (1054)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHh
Confidence 56666666654333
No 69
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.97 E-value=2.1e-30 Score=360.38 Aligned_cols=348 Identities=20% Similarity=0.257 Sum_probs=198.4
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
++..|+|+|.++++.++++ .++++++|||||||++|.+|+++.+.......+.++|||+|+++|+.|++..|++.+..
T Consensus 245 ~~~~~r~~Q~~ai~~il~g-~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~- 322 (936)
T 4a2w_A 245 ETKKARSYQIELAQPAING-KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER- 322 (936)
T ss_dssp ---CCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT-
T ss_pred CCCCCCHHHHHHHHHHHcC-CCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcc-
Confidence 4778999999999999885 56999999999999999999998887632211338999999999999999999965543
Q ss_pred CCcEEEEEcCCcccch---hhccCCcEEEEChhhHHHHHhhhcccc-cccceeEEEecccccccCCCCchHHHHHHHHHH
Q 000129 1418 LGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRK-YVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRY 1493 (2114)
Q Consensus 1418 ~g~~v~~l~G~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~-~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~ 1493 (2114)
.++++..++|+..... .....++|+|+||+++...+++ ... .+.++++||+||||++.+.. + +..++.++..
T Consensus 323 ~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~--~~~~~l~~~~liViDEaH~~~~~~-~-~~~i~~~~~~ 398 (936)
T 4a2w_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED--GTLTSLSIFTLMIFDECHNTTGNH-P-YNVLMTRYLE 398 (936)
T ss_dssp TTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHS--SSCCCGGGCSEEEEETGGGCSTTC-H-HHHHHHHHHH
T ss_pred cCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHc--CccccccCCCEEEEECccccCCCc-c-HHHHHHHHHH
Confidence 4889999999886542 2345679999999999887764 222 57889999999999987543 2 5555544332
Q ss_pred H-HhhcCCCceEEEEcccCCC--hh----------HHHHHhcCCCCceeecCC--------CCCccCcEEEEec------
Q 000129 1494 I-ASQVENKIRIVALSTSLAN--AK----------DLGEWIGATSHGLFNFPP--------GVRPVPLEIHIQG------ 1546 (2114)
Q Consensus 1494 i-~~~~~~~~riV~lSATl~n--~~----------dla~wl~~~~~~~~~f~~--------~~rpv~l~~~~~~------ 1546 (2114)
. ........++++||||+.. .. .+...++... +..... ..+|......+..
T Consensus 399 ~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~--i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~ 476 (936)
T 4a2w_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQA--ISTVRENIQELQRFMNKPEIDVRLVKRRIHNPF 476 (936)
T ss_dssp HHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSE--EECCCSSHHHHHHHSCCCCEEEEECCCCSCCHH
T ss_pred HhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCce--eecccccHHHHHHhccCCcceEEecccccCcHH
Confidence 2 1222456899999999953 21 2223333211 000000 0011100000000
Q ss_pred -------------------------------ccccchHHHHH--------------------------------------
Q 000129 1547 -------------------------------VDITNFEARMQ-------------------------------------- 1557 (2114)
Q Consensus 1547 -------------------------------~~~~~~~~~~~-------------------------------------- 1557 (2114)
+....+.....
T Consensus 477 ~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al 556 (936)
T 4a2w_A 477 AAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDAL 556 (936)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 00000000000
Q ss_pred ----------------h------------------------------------cCHHHHHHHHHHh------cCCCCEEE
Q 000129 1558 ----------------A------------------------------------MTKPTFTAIVQHA------KNEKPALV 1579 (2114)
Q Consensus 1558 ----------------~------------------------------------~~~~~~~~i~~~l------~~~~~~LV 1579 (2114)
. ...+....+...+ ..+.++||
T Consensus 557 ~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLI 636 (936)
T 4a2w_A 557 IISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLL 636 (936)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEE
T ss_pred hhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEE
Confidence 0 0011111111111 34678999
Q ss_pred EeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhc-C
Q 000129 1580 FVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA-G 1658 (2114)
Q Consensus 1580 Fv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~-g 1658 (2114)
||++++.+..++..|.......+.... . ..+.+...+||+|+..+|..+++.|++ |
T Consensus 637 F~~t~~~ae~L~~~L~~~~~l~~ik~~-~----------------------l~G~~~~~~hg~m~~~eR~~il~~Fr~~g 693 (936)
T 4a2w_A 637 FAKTRALVSALKKCMEENPILNYIKPG-V----------------------LMGRGRRDQTTGMTLPSQKGVLDAFKTSK 693 (936)
T ss_dssp EESSHHHHHHHHHHHHHCSTTSSCCCE-E----------------------C----------------------------
T ss_pred EeCCHHHHHHHHHHHhhCcccccccee-E----------------------EecCCCcccCCCCCHHHHHHHHHHhhccC
Confidence 999999999999888653111110000 0 123456778999999999999999999 9
Q ss_pred CceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcH
Q 000129 1659 KIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRK 1730 (2114)
Q Consensus 1659 ~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~ 1730 (2114)
.++|||||+++++|||+|++.+|| +++.|.+...|+||+|| ||. ..|.|++++.....
T Consensus 694 ~~~VLVaT~~~~eGIDlp~v~~VI----------~yD~p~s~~~~iQr~GR-GR~---~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 694 DNRLLIATSVADEGIDIVQCNLVV----------LYEYSGNVTKMIQVRGR-GRA---AGSKCILVTSKTEV 751 (936)
T ss_dssp CCSEEEEECC------CCCCSEEE----------EESCCSCSHHHHCC-----------CCCEEEEESCHHH
T ss_pred CeeEEEEeCchhcCCcchhCCEEE----------EeCCCCCHHHHHHhcCC-CCC---CCCEEEEEEeCCCH
Confidence 999999999999999999999999 88999999999999999 994 78999999877554
No 70
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=5.1e-30 Score=334.36 Aligned_cols=327 Identities=20% Similarity=0.248 Sum_probs=229.0
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.|+|+|.+++..++++ ++++++|||+|||+++.++++..+.. ..+ ++|||+|+++|+.|+++++++.++ ..+.
T Consensus 9 ~l~~~Q~~~i~~~~~~--~~ll~~~tG~GKT~~~~~~~~~~~~~--~~~--~~liv~P~~~L~~q~~~~~~~~~~-~~~~ 81 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET--NCLIVLPTGLGKTLIAMMIAEYRLTK--YGG--KVLMLAPTKPLVLQHAESFRRLFN-LPPE 81 (494)
T ss_dssp CCCHHHHHHHHHGGGS--CEEEECCTTSCHHHHHHHHHHHHHHH--SCS--CEEEECSSHHHHHHHHHHHHHHBC-SCGG
T ss_pred CccHHHHHHHHHHhhC--CEEEEcCCCCCHHHHHHHHHHHHHhc--CCC--eEEEEECCHHHHHHHHHHHHHHhC-cchh
Confidence 6999999999999986 79999999999999999999887763 344 899999999999999999995543 2245
Q ss_pred EEEEEcCCcccch--hhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhc
Q 000129 1421 RVVELTGETAMDL--KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQV 1498 (2114)
Q Consensus 1421 ~v~~l~G~~~~~~--~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~ 1498 (2114)
++..++|+..... .....++|+|+||+.+...+.+ ....+.++++||+||||++.+.. .+..+...+.. .
T Consensus 82 ~v~~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~--~~~~~~~~~~vIiDEaH~~~~~~--~~~~~~~~~~~----~ 153 (494)
T 1wp9_A 82 KIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLA--GRISLEDVSLIVFDEAHRAVGNY--AYVFIAREYKR----Q 153 (494)
T ss_dssp GEEEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHT--TSCCTTSCSEEEEETGGGCSTTC--HHHHHHHHHHH----H
T ss_pred heEEeeCCcchhhhhhhccCCCEEEecHHHHHHHHhc--CCcchhhceEEEEECCcccCCCC--cHHHHHHHHHh----c
Confidence 8899999876542 2345679999999999877664 23457889999999999987542 33334433332 2
Q ss_pred CCCceEEEEcccCCC-hh---HHHHHhcCCCCceee-cCC----CCCccCcEEEEecccccc--h---------------
Q 000129 1499 ENKIRIVALSTSLAN-AK---DLGEWIGATSHGLFN-FPP----GVRPVPLEIHIQGVDITN--F--------------- 1552 (2114)
Q Consensus 1499 ~~~~riV~lSATl~n-~~---dla~wl~~~~~~~~~-f~~----~~rpv~l~~~~~~~~~~~--~--------------- 1552 (2114)
....++++||||+.+ .. ++..+++........ ..+ ...+..........+... .
T Consensus 154 ~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (494)
T 1wp9_A 154 AKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPL 233 (494)
T ss_dssp CSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999985 23 344444432211100 000 001111111100000000 0
Q ss_pred ----------------------------------------------------------------HHHHHh----------
Q 000129 1553 ----------------------------------------------------------------EARMQA---------- 1558 (2114)
Q Consensus 1553 ----------------------------------------------------------------~~~~~~---------- 1558 (2114)
......
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 313 (494)
T 1wp9_A 234 AETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGST 313 (494)
T ss_dssp HHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccc
Confidence 000000
Q ss_pred --------------------------cCHHH----HHHHHHHh--cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccc
Q 000129 1559 --------------------------MTKPT----FTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKS 1606 (2114)
Q Consensus 1559 --------------------------~~~~~----~~~i~~~l--~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~ 1606 (2114)
...+. ...+.... ..+.++||||+++..+..++..|..
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~---------- 383 (494)
T 1wp9_A 314 KASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVK---------- 383 (494)
T ss_dssp HHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHH----------
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHH----------
Confidence 00011 11111221 3578999999999999888876632
Q ss_pred cccCCCcccchhhHhhhhHHHHHHHhccceEeecC--------CCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCc
Q 000129 1607 AFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHE--------GLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAH 1678 (2114)
Q Consensus 1607 ~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~--------~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~ 1678 (2114)
.+..+..+|| +|+..+|..+++.|++|.++|||||+++++|+|+|++
T Consensus 384 -------------------------~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~ 438 (494)
T 1wp9_A 384 -------------------------DGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEV 438 (494)
T ss_dssp -------------------------TTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTC
T ss_pred -------------------------cCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhC
Confidence 1345788888 9999999999999999999999999999999999999
Q ss_pred EEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcH
Q 000129 1679 LVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRK 1730 (2114)
Q Consensus 1679 ~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~ 1730 (2114)
.+|| +++.|.++..|+||+|||||.| .|.+++++.....
T Consensus 439 ~~Vi----------~~d~~~~~~~~~Qr~GR~~R~g---~g~~~~l~~~~t~ 477 (494)
T 1wp9_A 439 DLVV----------FYEPVPSAIRSIQRRGRTGRHM---PGRVIILMAKGTR 477 (494)
T ss_dssp CEEE----------ESSCCHHHHHHHHHHTTSCSCC---CSEEEEEEETTSH
T ss_pred CEEE----------EeCCCCCHHHHHHHHhhccCCC---CceEEEEEecCCH
Confidence 9999 7888899999999999999974 3999999987754
No 71
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=2.1e-30 Score=337.91 Aligned_cols=327 Identities=21% Similarity=0.311 Sum_probs=223.8
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.|+|+|.++++.++.+ ++++++|||+|||++++++++..+... +.++||++|+++|+.|+.+++.+.+
T Consensus 9 ~l~~~Q~~~i~~~~~~--~~ll~~~tG~GKT~~~~~~~~~~~~~~----------~~~~liv~P~~~L~~q~~~~~~~~~ 76 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET--NCLIVLPTGLGKTLIAMMIAEYRLTKY----------GGKVLMLAPTKPLVLQHAESFRRLF 76 (494)
T ss_dssp CCCHHHHHHHHHGGGS--CEEEECCTTSCHHHHHHHHHHHHHHHS----------CSCEEEECSSHHHHHHHHHHHHHHB
T ss_pred CccHHHHHHHHHHhhC--CEEEEcCCCCCHHHHHHHHHHHHHhcC----------CCeEEEEECCHHHHHHHHHHHHHHh
Confidence 7999999999999887 799999999999999999999887621 2379999999999999999999987
Q ss_pred ccCCcEEEEEeCCCccChh--hhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHH
Q 000129 575 QMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVR 652 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~ 652 (2114)
+..+.++..++|+...... ....++|+|+||+++....... ...+.++++||+||||++.+.. ....+...+
T Consensus 77 ~~~~~~v~~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~--~~~~~~~~~vIiDEaH~~~~~~--~~~~~~~~~-- 150 (494)
T 1wp9_A 77 NLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAG--RISLEDVSLIVFDEAHRAVGNY--AYVFIAREY-- 150 (494)
T ss_dssp CSCGGGEEEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTT--SCCTTSCSEEEEETGGGCSTTC--HHHHHHHHH--
T ss_pred CcchhheEEeeCCcchhhhhhhccCCCEEEecHHHHHHHHhcC--CcchhhceEEEEECCcccCCCC--cHHHHHHHH--
Confidence 5445589999998765432 2357899999999974333322 2356789999999999987531 223333322
Q ss_pred HHhhccccccEEEEccccCC-hHHHHHHHhccccCceEeecCC---cccc--cceeEEEeeccCchhHHH----------
Q 000129 653 QIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNS---YRPV--PLSQQYIGIQVKKPLQRF---------- 716 (2114)
Q Consensus 653 ~~~~~~~~~riv~lSATlpn-~~dva~~l~~~~~~~~~~f~~~---~rpv--~l~~~~~~~~~~~~~~~~---------- 716 (2114)
.......++++||||+++ .+++..++..-........... ..+. +....+...........+
T Consensus 151 --~~~~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (494)
T 1wp9_A 151 --KRQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRD 228 (494)
T ss_dssp --HHHCSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHH
T ss_pred --HhcCCCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHH
Confidence 223567899999999764 3444444432111111111000 0000 000001000000000000
Q ss_pred ----------------------------------------------------------------------HH--------
Q 000129 717 ----------------------------------------------------------------------QL-------- 718 (2114)
Q Consensus 717 ----------------------------------------------------------------------~~-------- 718 (2114)
..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 308 (494)
T 1wp9_A 229 ALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEA 308 (494)
T ss_dssp HHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhh
Confidence 00
Q ss_pred -----------------------------------hhHHHHHHHHHH---hCCCeEEEEecChHHHHHHHHHHHHHhhcc
Q 000129 719 -----------------------------------MNDLCYEKVVAV---AGKHQVLIFVHSRKETAKTARAIRDTALEN 760 (2114)
Q Consensus 719 -----------------------------------~~~~~~~~i~~~---~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~ 760 (2114)
-...+.+.+.+. ..++++||||+++..+..++..|...+.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~-- 386 (494)
T 1wp9_A 309 KAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGI-- 386 (494)
T ss_dssp HTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTC--
T ss_pred ccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCC--
Confidence 001112222222 3578999999999999999999886532
Q ss_pred cccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecC--------CCCHHHHHHHHHHHhCCCceEEEechHhhh
Q 000129 761 DTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHA--------GMTRGDRQLVEDLFGDGHVQVLVSTATLAW 832 (2114)
Q Consensus 761 ~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHa--------gl~~~~R~~v~~~F~~g~i~VLVaT~tla~ 832 (2114)
.+..+|| +|+..+|..+++.|++|.++|||||+++++
T Consensus 387 -----------------------------------~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~ 431 (494)
T 1wp9_A 387 -----------------------------------KAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEE 431 (494)
T ss_dssp -----------------------------------CEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGG
T ss_pred -----------------------------------CcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCcccc
Confidence 2455566 999999999999999999999999999999
Q ss_pred hcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcH
Q 000129 833 GVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891 (2114)
Q Consensus 833 GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~ 891 (2114)
|+|+|++++||+ |+++. ++..|+||+|||||.| . |.++++++....
T Consensus 432 Gldl~~~~~Vi~----~d~~~------~~~~~~Qr~GR~~R~g--~-g~~~~l~~~~t~ 477 (494)
T 1wp9_A 432 GLDVPEVDLVVF----YEPVP------SAIRSIQRRGRTGRHM--P-GRVIILMAKGTR 477 (494)
T ss_dssp GGGSTTCCEEEE----SSCCH------HHHHHHHHHTTSCSCC--C-SEEEEEEETTSH
T ss_pred CCCchhCCEEEE----eCCCC------CHHHHHHHHhhccCCC--C-ceEEEEEecCCH
Confidence 999999999998 55543 6778999999999987 3 999998887654
No 72
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.97 E-value=1.2e-30 Score=362.74 Aligned_cols=347 Identities=19% Similarity=0.292 Sum_probs=196.1
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.|+.+|+|+|.++++.++.+ .+++++||||||||++|++++++.+..... ..+.++|||+|+++|+.|+++.|
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g-~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~------~~~~~vLvl~Pt~~L~~Q~~~~~ 316 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAING-KNALICAPTGSGKTFVSILICEHHFQNMPA------GRKAKVVFLATKVPVYEQQKNVF 316 (936)
T ss_dssp ----CCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHTTTTTCCS------SCCCCEEEECSSHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcC-CCEEEEeCCCchHHHHHHHHHHHHHHhccc------cCCCeEEEEeCCHHHHHHHHHHH
Confidence 46789999999999999876 569999999999999999999988765421 12457999999999999999999
Q ss_pred HHhhccCCcEEEEEeCCCccCh---hhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHH
Q 000129 571 SNRLQMYDVKVRELSGDQTLTR---QQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIV 647 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~---~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv 647 (2114)
++++...++++..++|+..... .....++|+|+||+++....+... ...+..+++|||||||++.... + +..++
T Consensus 317 ~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~-~~~l~~~~liViDEaH~~~~~~-~-~~~i~ 393 (936)
T 4a2w_A 317 KHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT-LTSLSIFTLMIFDECHNTTGNH-P-YNVLM 393 (936)
T ss_dssp HHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSS-CCCGGGCSEEEEETGGGCSTTC-H-HHHHH
T ss_pred HHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCc-cccccCCCEEEEECccccCCCc-c-HHHHH
Confidence 9999888999999999985443 234578999999999844433321 1257889999999999987532 3 66666
Q ss_pred HHHHHHH-hhccccccEEEEccccCC--hHH----------HHHHHhccccCceEeecCC-------cccccceeEEEee
Q 000129 648 ARTVRQI-ETTKEHIRLVGLSATLPN--YED----------VALFLRVNLEKGLFYFDNS-------YRPVPLSQQYIGI 707 (2114)
Q Consensus 648 ~rl~~~~-~~~~~~~riv~lSATlpn--~~d----------va~~l~~~~~~~~~~f~~~-------~rpv~l~~~~~~~ 707 (2114)
.+..... ....+..++++||||++. ..+ +...+... .+..... +.+.+.. .+..+
T Consensus 394 ~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~----~i~~~~~~~~~l~~~~~~p~~-~~~~~ 468 (936)
T 4a2w_A 394 TRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQ----AISTVRENIQELQRFMNKPEI-DVRLV 468 (936)
T ss_dssp HHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCS----EEECCCSSHHHHHHHSCCCCE-EEEEC
T ss_pred HHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCc----eeecccccHHHHHHhccCCcc-eEEec
Confidence 5554322 222456899999999742 111 11222210 0000000 0000000 00000
Q ss_pred cc-----------------------------------------------------------Cch-------------hHH
Q 000129 708 QV-----------------------------------------------------------KKP-------------LQR 715 (2114)
Q Consensus 708 ~~-----------------------------------------------------------~~~-------------~~~ 715 (2114)
.. ... ...
T Consensus 469 ~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~ 548 (936)
T 4a2w_A 469 KRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEH 548 (936)
T ss_dssp CCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHH
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 00 000 000
Q ss_pred -------------------HHHhh-------------------------------------------HHHHHHHHHH---
Q 000129 716 -------------------FQLMN-------------------------------------------DLCYEKVVAV--- 730 (2114)
Q Consensus 716 -------------------~~~~~-------------------------------------------~~~~~~i~~~--- 730 (2114)
...+. ..+.+.+.+.
T Consensus 549 l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~ 628 (936)
T 4a2w_A 549 LRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRY 628 (936)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhcc
Confidence 00000 0011112221
Q ss_pred hCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHH
Q 000129 731 AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ 810 (2114)
Q Consensus 731 ~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~ 810 (2114)
..++++||||++++.+..++..|.....-.. + ....+...+...+||+|+..+|.
T Consensus 629 ~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~-i------------------------k~~~l~G~~~~~~hg~m~~~eR~ 683 (936)
T 4a2w_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNY-I------------------------KPGVLMGRGRRDQTTGMTLPSQK 683 (936)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHHHCSTTSS-C------------------------CCEEC------------------
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCccccc-c------------------------ceeEEecCCCcccCCCCCHHHHH
Confidence 2357999999999999999999986410000 0 00112234566779999999999
Q ss_pred HHHHHHhC-CCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCC
Q 000129 811 LVEDLFGD-GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889 (2114)
Q Consensus 811 ~v~~~F~~-g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~ 889 (2114)
.+++.|++ |.++|||||+++++|||+|++++||+ ||++. |+..|+||+|| ||. ..|.++++++..
T Consensus 684 ~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~----yD~p~------s~~~~iQr~GR-GR~---~~g~vi~Li~~~ 749 (936)
T 4a2w_A 684 GVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL----YEYSG------NVTKMIQVRGR-GRA---AGSKCILVTSKT 749 (936)
T ss_dssp ----------CCSEEEEECC------CCCCSEEEE----ESCCS------CSHHHHCC-----------CCCEEEEESCH
T ss_pred HHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEE----eCCCC------CHHHHHHhcCC-CCC---CCCEEEEEEeCC
Confidence 99999999 99999999999999999999999999 66654 67789999999 996 579999998876
Q ss_pred cH
Q 000129 890 EL 891 (2114)
Q Consensus 890 e~ 891 (2114)
+.
T Consensus 750 t~ 751 (936)
T 4a2w_A 750 EV 751 (936)
T ss_dssp HH
T ss_pred CH
Confidence 54
No 73
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.97 E-value=6.9e-30 Score=359.28 Aligned_cols=310 Identities=18% Similarity=0.248 Sum_probs=226.2
Q ss_pred CCCCCCCHHHHHHHHHHHcC---CC--cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSS---AD--NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE 565 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~---~~--nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q 565 (2114)
.+| ++||+|.++++.++.. +. ++|+|||||+|||.+|+++++..+.. +.+++|++||++||.|
T Consensus 600 f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~-----------g~~vlvlvPt~~La~Q 667 (1151)
T 2eyq_A 600 FPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN-----------HKQVAVLVPTTLLAQQ 667 (1151)
T ss_dssp CCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT-----------TCEEEEECSSHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh-----------CCeEEEEechHHHHHH
Confidence 355 4799999999998862 33 79999999999999999998887643 2389999999999999
Q ss_pred HHHHHHHhhccCCcEEEEEeCCCccChhh-------hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccC
Q 000129 566 VVGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDN 638 (2114)
Q Consensus 566 ~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~ 638 (2114)
++++|.+++..+++++..++|..+..... ...++|+|+||+.+ .. ...++++++|||||+|++
T Consensus 668 ~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll---~~----~~~~~~l~lvIiDEaH~~--- 737 (1151)
T 2eyq_A 668 HYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL---QS----DVKFKDLGLLIVDEEHRF--- 737 (1151)
T ss_dssp HHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH---HS----CCCCSSEEEEEEESGGGS---
T ss_pred HHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH---hC----CccccccceEEEechHhc---
Confidence 99999999988899999999876544321 13589999999853 22 135678999999999995
Q ss_pred CchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHH
Q 000129 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQL 718 (2114)
Q Consensus 639 rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~ 718 (2114)
|.....++.. ...+.++++||||++. ..+...+.... .............++...+... ...
T Consensus 738 -g~~~~~~l~~-------l~~~~~vl~lSATp~p-~~l~~~~~~~~-~~~~i~~~~~~r~~i~~~~~~~---~~~----- 799 (1151)
T 2eyq_A 738 -GVRHKERIKA-------MRANVDILTLTATPIP-RTLNMAMSGMR-DLSIIATPPARRLAVKTFVREY---DSM----- 799 (1151)
T ss_dssp -CHHHHHHHHH-------HHTTSEEEEEESSCCC-HHHHHHHTTTS-EEEECCCCCCBCBCEEEEEEEC---CHH-----
T ss_pred -ChHHHHHHHH-------hcCCCCEEEEcCCCCh-hhHHHHHhcCC-CceEEecCCCCccccEEEEecC---CHH-----
Confidence 3333333322 3457899999999543 34444333211 1111111111112222222211 111
Q ss_pred hhHHHHHHH-HHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCce
Q 000129 719 MNDLCYEKV-VAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGF 797 (2114)
Q Consensus 719 ~~~~~~~~i-~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv 797 (2114)
.+...+ .+...+++++|||++++.+..++..|..... ..++
T Consensus 800 ---~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p-----------------------------------~~~v 841 (1151)
T 2eyq_A 800 ---VVREAILREILRGGQVYYLYNDVENIQKAAERLAELVP-----------------------------------EARI 841 (1151)
T ss_dssp ---HHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCT-----------------------------------TSCE
T ss_pred ---HHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCC-----------------------------------CCeE
Confidence 111122 2334578999999999999999998876421 1358
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCC
Q 000129 798 AIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD 877 (2114)
Q Consensus 798 ~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d 877 (2114)
+++||+|+..+|..+++.|++|+++|||||+++++|||+|++++||. +++.. ++..+|.||+||+||.|
T Consensus 842 ~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi----~~~~~-----~~l~~l~Qr~GRvgR~g-- 910 (1151)
T 2eyq_A 842 AIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII----ERADH-----FGLAQLHQLRGRVGRSH-- 910 (1151)
T ss_dssp EECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEE----TTTTS-----SCHHHHHHHHTTCCBTT--
T ss_pred EEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEE----eCCCC-----CCHHHHHHHHhccCcCC--
Confidence 89999999999999999999999999999999999999999999886 55432 37889999999999987
Q ss_pred CceEEEEEcCCC
Q 000129 878 SYGEGIIITGHS 889 (2114)
Q Consensus 878 ~~G~~iil~~~~ 889 (2114)
..|.|++++..+
T Consensus 911 ~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 911 HQAYAWLLTPHP 922 (1151)
T ss_dssp BCEEEEEEECCG
T ss_pred CceEEEEEECCc
Confidence 679999998764
No 74
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.97 E-value=7.3e-31 Score=366.59 Aligned_cols=278 Identities=17% Similarity=0.156 Sum_probs=193.2
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.|| +|+|+|.++++.++.+ .+++++||||||||++|+++++..+.. +.++||++||++||.|+++.+
T Consensus 75 ~gf-~pt~iQ~~ai~~il~g-~dvlv~ApTGSGKTl~~l~~il~~~~~-----------~~~~Lil~PtreLa~Q~~~~l 141 (1104)
T 4ddu_A 75 FGK-DLTGYQRLWAKRIVQG-KSFTMVAPTGVGKTTFGMMTALWLARK-----------GKKSALVFPTVTLVKQTLERL 141 (1104)
T ss_dssp SSS-CCCHHHHHHHHHHTTT-CCEEECCSTTCCHHHHHHHHHHHHHTT-----------TCCEEEEESSHHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHHHHcC-CCEEEEeCCCCcHHHHHHHHHHHHHhc-----------CCeEEEEechHHHHHHHHHHH
Confidence 367 6999999999998876 469999999999999988888887632 347999999999999999999
Q ss_pred HHhhccCCcEEEEEeCCCccChh-----h-h-ccceEEEcCHhHH-HHHHhccCCCcccccccEEEEecccccccC----
Q 000129 571 SNRLQMYDVKVRELSGDQTLTRQ-----Q-I-EETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHDN---- 638 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~-----~-~-~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l~d~---- 638 (2114)
.++. ..++++..++|+.+...+ . . ..++|+|+||+++ +.+.+ ..++++++|||||||++.+.
T Consensus 142 ~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-----l~~~~l~~lViDEaH~l~~~~r~~ 215 (1104)
T 4ddu_A 142 QKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-----LSQKRFDFVFVDDVDAVLKASRNI 215 (1104)
T ss_dssp HTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-----HHTSCCSEEEESCHHHHTTSSHHH
T ss_pred HHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-----hcccCcCEEEEeCCCccccccccc
Confidence 9955 778999999999876332 1 1 2489999999997 44432 34568999999999987641
Q ss_pred --------Cchh-HHHHHHHHH--HHHhhcc--ccccEEEEcccc-CCh---HHHHHHHhccccCceEeecCCcccccce
Q 000129 639 --------RGPV-LESIVARTV--RQIETTK--EHIRLVGLSATL-PNY---EDVALFLRVNLEKGLFYFDNSYRPVPLS 701 (2114)
Q Consensus 639 --------rg~~-le~iv~rl~--~~~~~~~--~~~riv~lSATl-pn~---~dva~~l~~~~~~~~~~f~~~~rpv~l~ 701 (2114)
+.+. +..++..+. +...... ...|++++|||+ |.. .....++.... ......+..+.
T Consensus 216 Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v------~~~~~~~~~i~ 289 (1104)
T 4ddu_A 216 DTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTV------GRLVSVARNIT 289 (1104)
T ss_dssp HHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCC------CBCCCCCCCEE
T ss_pred hhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEe------ccCCCCcCCce
Confidence 2222 333333221 0000111 678999999994 432 11222322111 11122233344
Q ss_pred eEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhh
Q 000129 702 QQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHT 781 (2114)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~ 781 (2114)
+.++.. .+ ... +...+.. . ++++||||++++.+..++..|...+.
T Consensus 290 ~~~~~~--~k----~~~----L~~ll~~-~-~~~~LVF~~s~~~a~~l~~~L~~~g~----------------------- 334 (1104)
T 4ddu_A 290 HVRISS--RS----KEK----LVELLEI-F-RDGILIFAQTEEEGKELYEYLKRFKF----------------------- 334 (1104)
T ss_dssp EEEESC--CC----HHH----HHHHHHH-H-CSSEEEEESSSHHHHHHHHHHHHTTC-----------------------
T ss_pred eEEEec--CH----HHH----HHHHHHh-c-CCCEEEEECcHHHHHHHHHHHHhCCC-----------------------
Confidence 444332 11 111 1222222 2 58999999999999999999986542
Q ss_pred cccCcchhhhhccCceE-EecCCCCHHHHHHHHHHHhCCCceEEEe----chHhhhhcCCCc-eEEEEeccee
Q 000129 782 DMVKSNDLKDLLPYGFA-IHHAGMTRGDRQLVEDLFGDGHVQVLVS----TATLAWGVNLPA-HTVIIKGTQI 848 (2114)
Q Consensus 782 ~~~~~~~L~~ll~~gv~-~hHagl~~~~R~~v~~~F~~g~i~VLVa----T~tla~GVdlP~-v~vVI~~~~~ 848 (2114)
.+. .+|| +|+. ++.|++|.++|||| |+++++|||+|+ +++||+++.|
T Consensus 335 --------------~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P 387 (1104)
T 4ddu_A 335 --------------NVGETWSE-----FEKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTP 387 (1104)
T ss_dssp --------------CEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCC
T ss_pred --------------CeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCC
Confidence 234 5587 3555 99999999999999 999999999999 9999994444
No 75
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.97 E-value=6.3e-31 Score=359.35 Aligned_cols=339 Identities=17% Similarity=0.201 Sum_probs=218.1
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccC-CCceEEEEEcccHHHHHHH-HHHHHHHhcCCC
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE-TGVMRAVYIAPLEALAKER-YRDWEIKFGQGL 1418 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~-~~~~k~l~I~Ptr~La~q~-~~~~~~~f~~~~ 1418 (2114)
.|+|+|.++++.++++ .++++++|||||||++|.+|+++.+..... +.+.++|||+|+++|+.|+ ++.+++.+..
T Consensus 7 ~l~~~Q~~~i~~il~g-~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-- 83 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEG-KNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-- 83 (699)
T ss_dssp CCCHHHHHHHHHHHSS-CCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT--
T ss_pred CccHHHHHHHHHHHhC-CCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc--
Confidence 6999999999999985 559999999999999999999998876321 1112899999999999999 9999965543
Q ss_pred CcEEEEEcCCcccc---hhhccCCcEEEEChhhHHHHHhhh----cccccccceeEEEecccccccCCCCchHHHHHHHH
Q 000129 1419 GMRVVELTGETAMD---LKLLEKGQIIISTPEKWDALSRRW----KQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRM 1491 (2114)
Q Consensus 1419 g~~v~~l~G~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~----~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl 1491 (2114)
+++++.++|+.... .......+|+|+||+++...+.+. .....+.++++|||||||++.. ++.+..++.++
T Consensus 84 ~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~--~~~~~~i~~~~ 161 (699)
T 4gl2_A 84 WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK--EAVYNNIMRHY 161 (699)
T ss_dssp TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBT--TBSSCSHHHHH
T ss_pred CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCc--cchHHHHHHHH
Confidence 47899999987654 223467799999999998766321 1234678899999999998853 22222233322
Q ss_pred HHH-HhhcC---------CCceEEEEcccCCCh------------hHHHHHhcCCCCceeecCCC--------CCccCcE
Q 000129 1492 RYI-ASQVE---------NKIRIVALSTSLANA------------KDLGEWIGATSHGLFNFPPG--------VRPVPLE 1541 (2114)
Q Consensus 1492 ~~i-~~~~~---------~~~riV~lSATl~n~------------~dla~wl~~~~~~~~~f~~~--------~rpv~l~ 1541 (2114)
... ..... +..++|+||||+.+. .++..+++... +...... .+|....
T Consensus 162 l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~--i~~~~~~~~~l~~~~~~p~~~~ 239 (699)
T 4gl2_A 162 LMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFT--IKTVKENLDQLKNQIQEPCKKF 239 (699)
T ss_dssp HHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSC--CCCCCTTHHHHHHHSCCCEEEE
T ss_pred HHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCE--EEeecCchHHHhhhcCCCceEE
Confidence 111 11111 567999999999872 23344444411 0000000 0111100
Q ss_pred EEEecccccc----------------------------hHHHH-------------------------------------
Q 000129 1542 IHIQGVDITN----------------------------FEARM------------------------------------- 1556 (2114)
Q Consensus 1542 ~~~~~~~~~~----------------------------~~~~~------------------------------------- 1556 (2114)
..+....... +....
T Consensus 240 ~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 319 (699)
T 4gl2_A 240 AIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRM 319 (699)
T ss_dssp EEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCH
T ss_pred EEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000000 00000
Q ss_pred ------------------------------------------------------------HhcCHHHHHHHHHHhc--C-
Q 000129 1557 ------------------------------------------------------------QAMTKPTFTAIVQHAK--N- 1573 (2114)
Q Consensus 1557 ------------------------------------------------------------~~~~~~~~~~i~~~l~--~- 1573 (2114)
......+...+..... +
T Consensus 320 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~ 399 (699)
T 4gl2_A 320 IDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEE 399 (699)
T ss_dssp HHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 0000001111222111 2
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCC--------CCH
Q 000129 1574 EKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEG--------LNK 1645 (2114)
Q Consensus 1574 ~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~--------ls~ 1645 (2114)
++++||||++++.++.++..|...... ...+..+..+||+ |+.
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l-----------------------------~~~g~~~~~lhg~~~~~~~~~~~~ 450 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKF-----------------------------AEVGVKAHHLIGAGHSSEFKPMTQ 450 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSC-----------------------------C-----CEECCCSCCCTTCCCCCH
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccc-----------------------------cccCcceEEEECCCCccCCCCCCH
Confidence 789999999999999999877432000 0013457899999 999
Q ss_pred HHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEe
Q 000129 1646 TDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILC 1725 (2114)
Q Consensus 1646 ~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~ 1725 (2114)
.+|..+++.|++|.++|||||+++++|||+|++++|| +++.|.++.+|+||+|||||.| +.+++++
T Consensus 451 ~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI----------~~d~p~s~~~~~Qr~GRArr~g----~~~~l~~ 516 (699)
T 4gl2_A 451 NEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVI----------RYGLVTNEIAMVQARGRARADE----STYVLVA 516 (699)
T ss_dssp HHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCCCE----------EESCCCCHHHHHHHHTTSCSSS----CEEEEEE
T ss_pred HHHHHHHHHHhcCCCcEEEEccccccCCccccCCEEE----------EeCCCCCHHHHHHHcCCCCCCC----ceEEEEE
Confidence 9999999999999999999999999999999999999 8999999999999999988742 5555555
Q ss_pred ecCc
Q 000129 1726 HAPR 1729 (2114)
Q Consensus 1726 ~~~~ 1729 (2114)
....
T Consensus 517 ~~~~ 520 (699)
T 4gl2_A 517 HSGS 520 (699)
T ss_dssp ESSS
T ss_pred eCCc
Confidence 5443
No 76
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.97 E-value=9.7e-32 Score=376.26 Aligned_cols=280 Identities=15% Similarity=0.178 Sum_probs=196.5
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.||. | ++|.++++.++.+ .|++++||||||||+ |.+|++..+... +.++||++||++||.|+++.+
T Consensus 54 ~g~~-p-~iQ~~ai~~il~g-~dvlv~apTGSGKTl-~~lp~l~~~~~~----------~~~~lil~PtreLa~Q~~~~l 119 (1054)
T 1gku_B 54 VGEP-R-AIQKMWAKRILRK-ESFAATAPTGVGKTS-FGLAMSLFLALK----------GKRCYVIFPTSLLVIQAAETI 119 (1054)
T ss_dssp TCSC-C-HHHHHHHHHHHTT-CCEECCCCBTSCSHH-HHHHHHHHHHTT----------SCCEEEEESCHHHHHHHHHHH
T ss_pred cCCC-H-HHHHHHHHHHHhC-CCEEEEcCCCCCHHH-HHHHHHHHHhhc----------CCeEEEEeccHHHHHHHHHHH
Confidence 4898 9 9999999999876 569999999999998 888888776542 347999999999999999999
Q ss_pred HHhhccCCc----EEEEEeCCCccChh-----hhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCch
Q 000129 571 SNRLQMYDV----KVRELSGDQTLTRQ-----QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGP 641 (2114)
Q Consensus 571 ~~~~~~~gi----~v~~l~Gd~~~~~~-----~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~ 641 (2114)
++++...++ +++.++|+.+...+ ....++|+|+||+++..+.+. ++++++|||||||++.+ +|.
T Consensus 120 ~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~------L~~l~~lViDEah~~l~-~~~ 192 (1054)
T 1gku_B 120 RKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRE------LGHFDFIFVDDVDAILK-ASK 192 (1054)
T ss_dssp HHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTT------SCCCSEEEESCHHHHHT-STH
T ss_pred HHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHH------hccCCEEEEeChhhhhh-ccc
Confidence 999888888 89999999877552 233499999999987433332 56899999999999987 788
Q ss_pred hHHHHHHHHHHH----HhhccccccEEEEccccCChHHHHHHHhccccCceEeecC-CcccccceeEEEeeccCchhHHH
Q 000129 642 VLESIVARTVRQ----IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDN-SYRPVPLSQQYIGIQVKKPLQRF 716 (2114)
Q Consensus 642 ~le~iv~rl~~~----~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~-~~rpv~l~~~~~~~~~~~~~~~~ 716 (2114)
.++.++.++-.. ........|++++|||+++..++...+...+.. +.... ...+..+.+.++ ...+ .
T Consensus 193 ~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~--i~v~~~~~~~~~i~~~~~--~~~k----~ 264 (1054)
T 1gku_B 193 NVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLN--FDIGSSRITVRNVEDVAV--NDES----I 264 (1054)
T ss_dssp HHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHC--CCCSCCEECCCCEEEEEE--SCCC----T
T ss_pred cHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCchhHHHHHhhcceE--EEccCcccCcCCceEEEe--chhH----H
Confidence 888877654110 011245678999999998754333332211110 01111 111122333333 1111 1
Q ss_pred HHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCc
Q 000129 717 QLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYG 796 (2114)
Q Consensus 717 ~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~g 796 (2114)
..+.. +.... ++++||||+|++.|+.++..|... ..
T Consensus 265 ~~L~~-----ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~--------------------------------------~~ 300 (1054)
T 1gku_B 265 STLSS-----ILEKL-GTGGIIYARTGEEAEEIYESLKNK--------------------------------------FR 300 (1054)
T ss_dssp TTTHH-----HHTTS-CSCEEEEESSHHHHHHHHHTTTTS--------------------------------------SC
T ss_pred HHHHH-----HHhhc-CCCEEEEEcCHHHHHHHHHHHhhc--------------------------------------cC
Confidence 11111 11111 578999999999999988766431 24
Q ss_pred eEEecCCCCHHHHHHHHHHHhCCCceEEEe----chHhhhhcCCCce-EEEEeccee
Q 000129 797 FAIHHAGMTRGDRQLVEDLFGDGHVQVLVS----TATLAWGVNLPAH-TVIIKGTQI 848 (2114)
Q Consensus 797 v~~hHagl~~~~R~~v~~~F~~g~i~VLVa----T~tla~GVdlP~v-~vVI~~~~~ 848 (2114)
++.+||+| ..+++.|++|.++|||| |+++++|||+|++ ++||+++.|
T Consensus 301 v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 301 IGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp EEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCC
T ss_pred eeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCC
Confidence 78889998 37889999999999999 9999999999995 999995544
No 77
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.97 E-value=1.6e-30 Score=363.20 Aligned_cols=272 Identities=14% Similarity=0.141 Sum_probs=190.1
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
|| .|+|+|.++++.++++. +++++||||||||++|+++++..+.. ++ ++|||+||++||.|+++++++ |+ .
T Consensus 76 gf-~pt~iQ~~ai~~il~g~-dvlv~ApTGSGKTl~~l~~il~~~~~---~~--~~Lil~PtreLa~Q~~~~l~~-l~-~ 146 (1104)
T 4ddu_A 76 GK-DLTGYQRLWAKRIVQGK-SFTMVAPTGVGKTTFGMMTALWLARK---GK--KSALVFPTVTLVKQTLERLQK-LA-D 146 (1104)
T ss_dssp SS-CCCHHHHHHHHHHTTTC-CEEECCSTTCCHHHHHHHHHHHHHTT---TC--CEEEEESSHHHHHHHHHHHHT-TS-C
T ss_pred CC-CCCHHHHHHHHHHHcCC-CEEEEeCCCCcHHHHHHHHHHHHHhc---CC--eEEEEechHHHHHHHHHHHHH-hh-C
Confidence 46 69999999999999854 59999999999999998888877633 34 899999999999999999995 76 5
Q ss_pred CCcEEEEEcCCcccc-----hhhcc--CCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHH-
Q 000129 1418 LGMRVVELTGETAMD-----LKLLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVS- 1489 (2114)
Q Consensus 1418 ~g~~v~~l~G~~~~~-----~~~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~s- 1489 (2114)
.+++++.++|+.+.. ...+. .++|+|+||+++..++.. ..++++++||+||||++.... ..+..++.
T Consensus 147 ~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~----l~~~~l~~lViDEaH~l~~~~-r~~Dr~L~~ 221 (1104)
T 4ddu_A 147 EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK----LSQKRFDFVFVDDVDAVLKAS-RNIDTLLMM 221 (1104)
T ss_dssp TTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH----HHTSCCSEEEESCHHHHTTSS-HHHHHHHHT
T ss_pred CCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh----hcccCcCEEEEeCCCcccccc-ccchhhhHh
Confidence 688999999998752 22333 369999999998766553 346789999999999876521 11111111
Q ss_pred -----H-HHHHHhhcC-----------CCceEEEEcccC-CCh---hHHHHHhcCCCCceeecCCCCCccCcEEEEeccc
Q 000129 1490 -----R-MRYIASQVE-----------NKIRIVALSTSL-ANA---KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVD 1548 (2114)
Q Consensus 1490 -----r-l~~i~~~~~-----------~~~riV~lSATl-~n~---~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~ 1548 (2114)
. +..+...++ .+.|++++|||+ +.. ..+..+++..... ....+..+...+...
T Consensus 222 ~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v~~-----~~~~~~~i~~~~~~~- 295 (1104)
T 4ddu_A 222 VGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGR-----LVSVARNITHVRISS- 295 (1104)
T ss_dssp SSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCCCB-----CCCCCCCEEEEEESC-
T ss_pred cCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEecc-----CCCCcCCceeEEEec-
Confidence 1 223333223 678999999995 432 1234444422110 111111222222211
Q ss_pred ccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHH
Q 000129 1549 ITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEML 1628 (2114)
Q Consensus 1549 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L 1628 (2114)
.. . ......+ .. .++++||||++++.|..++..|..
T Consensus 296 -~k-~-------~~L~~ll-~~--~~~~~LVF~~s~~~a~~l~~~L~~-------------------------------- 331 (1104)
T 4ddu_A 296 -RS-K-------EKLVELL-EI--FRDGILIFAQTEEEGKELYEYLKR-------------------------------- 331 (1104)
T ss_dssp -CC-H-------HHHHHHH-HH--HCSSEEEEESSSHHHHHHHHHHHH--------------------------------
T ss_pred -CH-H-------HHHHHHH-Hh--cCCCEEEEECcHHHHHHHHHHHHh--------------------------------
Confidence 11 1 1112222 22 258999999999999999876632
Q ss_pred HHHhccceE-eecCCCCHHHHHHHHHHHhcCCceEEEe----cCccccccCCCC-cEEEE
Q 000129 1629 KATLRHGVG-YLHEGLNKTDQEVVSALFEAGKIKVCVM----SSSMCWGVPLTA-HLVVV 1682 (2114)
Q Consensus 1629 ~~~l~~gV~-~~H~~ls~~dR~~v~~~F~~g~i~VLVa----T~~la~Gvdip~-~~vVI 1682 (2114)
.+..+. .+|| +|+. ++.|++|+++|||| |+++++|||+|+ +++||
T Consensus 332 ---~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI 382 (1104)
T 4ddu_A 332 ---FKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVI 382 (1104)
T ss_dssp ---TTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEE
T ss_pred ---CCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEE
Confidence 234577 8898 3555 99999999999999 999999999999 89999
No 78
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.97 E-value=1.5e-29 Score=355.97 Aligned_cols=308 Identities=17% Similarity=0.253 Sum_probs=227.5
Q ss_pred CCCCCHHHHHHHHHHHc----CC-CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHH
Q 000129 1339 FKHFNPIQTQVFTVLYN----TD-DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIK 1413 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~----~~-~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~ 1413 (2114)
|. +||+|.++++.++. +. .+++++||||||||++|+++++..+.. +. +++|++||++||.|+++.+++.
T Consensus 602 ~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~---g~--~vlvlvPt~~La~Q~~~~~~~~ 675 (1151)
T 2eyq_A 602 FE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN---HK--QVAVLVPTTLLAQQHYDNFRDR 675 (1151)
T ss_dssp SC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT---TC--EEEEECSSHHHHHHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh---CC--eEEEEechHHHHHHHHHHHHHH
Confidence 54 69999999999886 22 379999999999999999998876654 34 9999999999999999999987
Q ss_pred hcCCCCcEEEEEcCCcccch-----hhcc--CCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHH
Q 000129 1414 FGQGLGMRVVELTGETAMDL-----KLLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEV 1486 (2114)
Q Consensus 1414 f~~~~g~~v~~l~G~~~~~~-----~~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~ 1486 (2114)
|.. .++++..++|..+... +.+. ..+|+|+||+.+. ....++++++|||||+|+++ ...
T Consensus 676 ~~~-~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-------~~~~~~~l~lvIiDEaH~~g----~~~-- 741 (1151)
T 2eyq_A 676 FAN-WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-------SDVKFKDLGLLIVDEEHRFG----VRH-- 741 (1151)
T ss_dssp STT-TTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-------SCCCCSSEEEEEEESGGGSC----HHH--
T ss_pred hhc-CCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-------CCccccccceEEEechHhcC----hHH--
Confidence 765 4788999988655431 1222 4699999997542 23457899999999999964 221
Q ss_pred HHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHh-cCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHH
Q 000129 1487 IVSRMRYIASQVENKIRIVALSTSLANAKDLGEWI-GATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFT 1565 (2114)
Q Consensus 1487 i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl-~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~ 1565 (2114)
...++. +..+.++++||||+... .+...+ +.....++...+ ....++...+..... .....
T Consensus 742 -~~~l~~----l~~~~~vl~lSATp~p~-~l~~~~~~~~~~~~i~~~~-~~r~~i~~~~~~~~~-----------~~i~~ 803 (1151)
T 2eyq_A 742 -KERIKA----MRANVDILTLTATPIPR-TLNMAMSGMRDLSIIATPP-ARRLAVKTFVREYDS-----------MVVRE 803 (1151)
T ss_dssp -HHHHHH----HHTTSEEEEEESSCCCH-HHHHHHTTTSEEEECCCCC-CBCBCEEEEEEECCH-----------HHHHH
T ss_pred -HHHHHH----hcCCCCEEEEcCCCChh-hHHHHHhcCCCceEEecCC-CCccccEEEEecCCH-----------HHHHH
Confidence 222222 24578999999998543 333333 222212222222 222344444333221 12234
Q ss_pred HHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCH
Q 000129 1566 AIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNK 1645 (2114)
Q Consensus 1566 ~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~ 1645 (2114)
.+...+..+++++|||++++.|..++..|.... .+.++..+||+|+.
T Consensus 804 ~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~---------------------------------p~~~v~~lhg~~~~ 850 (1151)
T 2eyq_A 804 AILREILRGGQVYYLYNDVENIQKAAERLAELV---------------------------------PEARIAIGHGQMRE 850 (1151)
T ss_dssp HHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHC---------------------------------TTSCEEECCSSCCH
T ss_pred HHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhC---------------------------------CCCeEEEEeCCCCH
Confidence 455555778999999999999998887664321 13579999999999
Q ss_pred HHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCC-CCCHhHHHHhHcccCCCCCCCceEEEEE
Q 000129 1646 TDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHT-DYPVTDLLQMMGHASRPLLDNSGKCVIL 1724 (2114)
Q Consensus 1646 ~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~-~~s~~~~lQr~GRAGR~~~~~~G~~iil 1724 (2114)
.+|..+++.|++|+++|||||+++++|+|+|++++|| ..+. +++..+|.||+||+||. +..|.|+++
T Consensus 851 ~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VI----------i~~~~~~~l~~l~Qr~GRvgR~--g~~g~~~ll 918 (1151)
T 2eyq_A 851 RELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII----------IERADHFGLAQLHQLRGRVGRS--HHQAYAWLL 918 (1151)
T ss_dssp HHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEE----------ETTTTSSCHHHHHHHHTTCCBT--TBCEEEEEE
T ss_pred HHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEE----------EeCCCCCCHHHHHHHHhccCcC--CCceEEEEE
Confidence 9999999999999999999999999999999998888 2333 57899999999999998 578999999
Q ss_pred eecCc
Q 000129 1725 CHAPR 1729 (2114)
Q Consensus 1725 ~~~~~ 1729 (2114)
+...+
T Consensus 919 ~~~~~ 923 (1151)
T 2eyq_A 919 TPHPK 923 (1151)
T ss_dssp ECCGG
T ss_pred ECCcc
Confidence 87653
No 79
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.97 E-value=3.1e-30 Score=337.55 Aligned_cols=350 Identities=16% Similarity=0.184 Sum_probs=235.7
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.|| .|+|+|..+++.++.++ |..|+||+|||++|.+|++..... +..++||+||++||.|.++.+
T Consensus 80 lG~-~pt~VQ~~~ip~ll~G~---Iaea~TGeGKTlaf~LP~~l~aL~-----------g~~vlVltptreLA~qd~e~~ 144 (844)
T 1tf5_A 80 TGM-FPFKVQLMGGVALHDGN---IAEMKTGEGKTLTSTLPVYLNALT-----------GKGVHVVTVNEYLASRDAEQM 144 (844)
T ss_dssp HSC-CCCHHHHHHHHHHHTTS---EEECCTTSCHHHHHHHHHHHHHTT-----------SSCEEEEESSHHHHHHHHHHH
T ss_pred cCC-CCcHHHHHhhHHHhCCC---EEEccCCcHHHHHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHH
Confidence 389 99999999999988775 999999999999999999854322 236999999999999999999
Q ss_pred HHhhccCCcEEEEEeCCCccChhh-hccceEEEcCHhHH--HHHHhccC---CCcccccccEEEEecccccc-cC-Cch-
Q 000129 571 SNRLQMYDVKVRELSGDQTLTRQQ-IEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLLH-DN-RGP- 641 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~-~~~~~IiV~TPek~--d~l~r~~~---~~~~l~~v~liIiDEaH~l~-d~-rg~- 641 (2114)
..++..+|++|+.++|+.+...+. ...++|+|+||+++ |.+..+.. ....++.+.++||||||.|+ |+ +.|
T Consensus 145 ~~l~~~lgl~v~~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tpl 224 (844)
T 1tf5_A 145 GKIFEFLGLTVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPL 224 (844)
T ss_dssp HHHHHHTTCCEEECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEE
T ss_pred HHHHhhcCCeEEEEeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccch
Confidence 999999999999999998654332 34789999999997 66655431 23456889999999999986 53 332
Q ss_pred ----------hHHHHHHHHHHHHhhcc---------ccccEE-----------------EEccccCC-hHHHHHHHhcc-
Q 000129 642 ----------VLESIVARTVRQIETTK---------EHIRLV-----------------GLSATLPN-YEDVALFLRVN- 683 (2114)
Q Consensus 642 ----------~le~iv~rl~~~~~~~~---------~~~riv-----------------~lSATlpn-~~dva~~l~~~- 683 (2114)
.+...+.++. ..++ ...+++ ++|||.|. ...+...+.+.
T Consensus 225 Iisg~~~~~~~~~~~i~~iv---~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~ 301 (844)
T 1tf5_A 225 IISGQAAKSTKLYVQANAFV---RTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHV 301 (844)
T ss_dssp EEEEEEECCCHHHHHHHHHH---TTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHH
T ss_pred hhcCCcccchhHHHHHHHHH---HhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHH
Confidence 1222223332 2222 244555 77888652 12232222110
Q ss_pred ----ccCce------Eeec-------------------------------------------------------------
Q 000129 684 ----LEKGL------FYFD------------------------------------------------------------- 692 (2114)
Q Consensus 684 ----~~~~~------~~f~------------------------------------------------------------- 692 (2114)
....+ ...+
T Consensus 302 l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~ 381 (844)
T 1tf5_A 302 AMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEE 381 (844)
T ss_dssp TCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGH
T ss_pred HhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhH
Confidence 00000 0000
Q ss_pred --------------CCccccccee--EEEeeccCchhHHHHHhhHHHHHHHHH-HhCCCeEEEEecChHHHHHHHHHHHH
Q 000129 693 --------------NSYRPVPLSQ--QYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVHSRKETAKTARAIRD 755 (2114)
Q Consensus 693 --------------~~~rpv~l~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~vLVFv~sr~~~~~~a~~L~~ 755 (2114)
+..+|+.-.. .++. .....++..+. ..+.+ +..+.++||||+|++.++.++..|..
T Consensus 382 ~e~~~iY~l~vv~IPtn~p~~r~d~~d~v~---~~~~~K~~al~----~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~ 454 (844)
T 1tf5_A 382 EEFRNIYNMQVVTIPTNRPVVRDDRPDLIY---RTMEGKFKAVA----EDVAQRYMTGQPVLVGTVAVETSELISKLLKN 454 (844)
T ss_dssp HHHHHHHCCCEEECCCSSCCCCEECCCEEE---SSHHHHHHHHH----HHHHHHHHHTCCEEEEESCHHHHHHHHHHHHT
T ss_pred HHHHHHhCCceEEecCCCCcccccCCcEEE---eCHHHHHHHHH----HHHHHHHhcCCcEEEEECCHHHHHHHHHHHHH
Confidence 0011110000 0000 01122222222 22322 23367899999999999999999987
Q ss_pred HhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcC
Q 000129 756 TALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVN 835 (2114)
Q Consensus 756 ~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVd 835 (2114)
.++. ...+||++...+|..+.+.|+.| .|+|||++++||+|
T Consensus 455 ~gi~-------------------------------------~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~D 495 (844)
T 1tf5_A 455 KGIP-------------------------------------HQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTD 495 (844)
T ss_dssp TTCC-------------------------------------CEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCC
T ss_pred CCCC-------------------------------------EEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcC
Confidence 6544 34569999999988787777766 69999999999999
Q ss_pred CC--------ceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcH-------HHHHHh---
Q 000129 836 LP--------AHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL-------RYYLSL--- 897 (2114)
Q Consensus 836 lP--------~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~-------~~~~~l--- 897 (2114)
+| +..+||+ |+.+. |...|.||+||+||.| .+|.++.+++..+. +....+
T Consensus 496 I~l~~~V~~~ggl~VIn----~d~p~------s~r~y~hr~GRTGRqG--~~G~s~~~vs~eD~l~r~f~~~~~~~~~~~ 563 (844)
T 1tf5_A 496 IKLGEGVKELGGLAVVG----TERHE------SRRIDNQLRGRSGRQG--DPGITQFYLSMEDELMRRFGAERTMAMLDR 563 (844)
T ss_dssp CCCCTTSGGGTSEEEEE----SSCCS------SHHHHHHHHTTSSGGG--CCEEEEEEEETTSSGGGSSHHHHHHHHHHH
T ss_pred ccccchhhhcCCcEEEE----ecCCC------CHHHHHhhcCccccCC--CCCeEEEEecHHHHHHHHHhHHHHHHHHHh
Confidence 99 8899999 66655 7889999999999988 78999988775431 112222
Q ss_pred --hcCCCcccchhhHhhHHHH
Q 000129 898 --MNQQLPIESQFVSKLADQL 916 (2114)
Q Consensus 898 --l~~~~pies~l~~~l~d~l 916 (2114)
+....||++.......+..
T Consensus 564 ~~~~~~~~i~~~~~~~~i~~a 584 (844)
T 1tf5_A 564 FGMDDSTPIQSKMVSRAVESS 584 (844)
T ss_dssp HTCCSSSCBCCHHHHHHHHHH
T ss_pred cCCCCccccchHHHHHHHHHH
Confidence 2334678887776654443
No 80
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.97 E-value=3.6e-31 Score=340.68 Aligned_cols=300 Identities=16% Similarity=0.156 Sum_probs=201.5
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
|+..++|+|. +++.++.++++++++||||||||++|++|++..+... +.+++|++||++||.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~----------~~~~lvl~Ptr~La~Q~~~~l~ 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR----------RLRTLILAPTRVVAAEMEEALR 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT----------TCCEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc----------CCcEEEECCCHHHHHHHHHHhc
Confidence 6788999985 7999999988889999999999999999999876542 2479999999999999998874
Q ss_pred HhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHH
Q 000129 572 NRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTV 651 (2114)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~ 651 (2114)
|..+....+... ........|.++|++.+....... ..++++++|||||||++...+...++.+..
T Consensus 70 ------g~~v~~~~~~~~--~~~~~~~~i~~~t~~~l~~~l~~~---~~l~~~~~iViDEah~~~~~~~~~~~~~~~--- 135 (451)
T 2jlq_A 70 ------GLPIRYQTPAVK--SDHTGREIVDLMCHATFTTRLLSS---TRVPNYNLIVMDEAHFTDPCSVAARGYIST--- 135 (451)
T ss_dssp ------TSCEEECCTTCS--CCCCSSCCEEEEEHHHHHHHHHHC---SCCCCCSEEEEETTTCCSHHHHHHHHHHHH---
T ss_pred ------Cceeeeeecccc--ccCCCCceEEEEChHHHHHHhhCc---ccccCCCEEEEeCCccCCcchHHHHHHHHH---
Confidence 334433222211 122345679999999863222221 457889999999999872122222222211
Q ss_pred HHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHh
Q 000129 652 RQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVA 731 (2114)
Q Consensus 652 ~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 731 (2114)
....++.|+++||||+|+ .+..++... ....... +++|.. .+ ..... .+.+
T Consensus 136 ---~~~~~~~~~i~~SAT~~~--~~~~~~~~~--~~~~~~~---~~~p~~-~~------------~~~~~----~l~~-- 186 (451)
T 2jlq_A 136 ---RVEMGEAAAIFMTATPPG--STDPFPQSN--SPIEDIE---REIPER-SW------------NTGFD----WITD-- 186 (451)
T ss_dssp ---HHHTTSCEEEEECSSCTT--CCCSSCCCS--SCEEEEE---CCCCSS-CC------------SSSCH----HHHH--
T ss_pred ---hhcCCCceEEEEccCCCc--cchhhhcCC--CceEecC---ccCCch-hh------------HHHHH----HHHh--
Confidence 123457999999999874 111111111 0111111 111110 00 00111 1111
Q ss_pred CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHH
Q 000129 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (2114)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~ 811 (2114)
..+++||||+|++.++.++..|...+ ..+..+|+.+ |..
T Consensus 187 ~~~~~lVF~~s~~~a~~l~~~L~~~g-------------------------------------~~~~~lh~~~----~~~ 225 (451)
T 2jlq_A 187 YQGKTVWFVPSIKAGNDIANCLRKSG-------------------------------------KRVIQLSRKT----FDT 225 (451)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTT-------------------------------------CCEEEECTTT----HHH
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHcC-------------------------------------CeEEECCHHH----HHH
Confidence 26799999999999999999886532 2345668865 467
Q ss_pred HHHHHhCCCceEEEechHhhhhcCCCceEEEEeccee----cc--CCCCc----cccCCHHHHHHhhcccCCCCCCCceE
Q 000129 812 VEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQI----YN--PEKGA----WTELSPLDIMQMLGRAGRPQYDSYGE 881 (2114)
Q Consensus 812 v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~----yd--~~~g~----~~~~s~~~~~Qr~GRAGR~g~d~~G~ 881 (2114)
+++.|++|+++|||||+++++|||+|+ ++||+++.. || ..... ..+.|..+|+||+|||||.|.+ .|.
T Consensus 226 ~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~-~g~ 303 (451)
T 2jlq_A 226 EYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQ-EDD 303 (451)
T ss_dssp HGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTC-CCE
T ss_pred HHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCC-Ccc
Confidence 999999999999999999999999999 999985522 11 11000 0456899999999999998842 688
Q ss_pred EEEEcCC
Q 000129 882 GIIITGH 888 (2114)
Q Consensus 882 ~iil~~~ 888 (2114)
+++++..
T Consensus 304 ~~~~~~~ 310 (451)
T 2jlq_A 304 QYVFSGD 310 (451)
T ss_dssp EEEECSC
T ss_pred EEEEeCC
Confidence 8888754
No 81
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.97 E-value=3.1e-30 Score=341.44 Aligned_cols=298 Identities=22% Similarity=0.282 Sum_probs=209.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCcc
Q 000129 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~ 590 (2114)
+++++++||||||||..++ +.+.... +.+|++|+|+||.|+++++++. |+.++.++|+...
T Consensus 155 rk~vlv~apTGSGKT~~al----~~l~~~~-----------~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~ 215 (677)
T 3rc3_A 155 RKIIFHSGPTNSGKTYHAI----QKYFSAK-----------SGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERV 215 (677)
T ss_dssp CEEEEEECCTTSSHHHHHH----HHHHHSS-----------SEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEE
T ss_pred CCEEEEEcCCCCCHHHHHH----HHHHhcC-----------CeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeE
Confidence 4579999999999998443 3333321 3599999999999999998875 7889999998654
Q ss_pred Chhh-hccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-CCchhHHHHHHHHHHHHhhccccccEEEEcc
Q 000129 591 TRQQ-IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSA 668 (2114)
Q Consensus 591 ~~~~-~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSA 668 (2114)
-... -...+++++|+|.++ ..+.+++|||||+|++.+ ++|..++.++.++ ....++++++||
T Consensus 216 iv~TpGr~~~il~~T~e~~~----------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l------~~~~i~il~~SA 279 (677)
T 3rc3_A 216 TVQPNGKQASHVSCTVEMCS----------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGL------CAEEVHLCGEPA 279 (677)
T ss_dssp CCSTTCCCCSEEEEEGGGCC----------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHC------CEEEEEEEECGG
T ss_pred EecCCCcccceeEecHhHhh----------hcccCCEEEEecceecCCccchHHHHHHHHcc------CccceEEEeccc
Confidence 2211 123678999988543 346689999999999988 6998888777654 236789999999
Q ss_pred ccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHH
Q 000129 669 TLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAK 748 (2114)
Q Consensus 669 Tlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~ 748 (2114)
|.+....+..+.+.. +.+....++.++... .. .... +. .. ....+|||+|+++++.
T Consensus 280 T~~~i~~l~~~~~~~-----~~v~~~~r~~~l~~~-----~~-~l~~---l~---------~~-~~g~iIf~~s~~~ie~ 335 (677)
T 3rc3_A 280 AIDLVMELMYTTGEE-----VEVRDYKRLTPISVL-----DH-ALES---LD---------NL-RPGDCIVCFSKNDIYS 335 (677)
T ss_dssp GHHHHHHHHHHHTCC-----EEEEECCCSSCEEEC-----SS-CCCS---GG---------GC-CTTEEEECSSHHHHHH
T ss_pred hHHHHHHHHHhcCCc-----eEEEEeeecchHHHH-----HH-HHHH---HH---------hc-CCCCEEEEcCHHHHHH
Confidence 976555555444322 122223344444321 00 0000 00 11 2345889999999999
Q ss_pred HHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhC--CCceEEEe
Q 000129 749 TARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGD--GHVQVLVS 826 (2114)
Q Consensus 749 ~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~--g~i~VLVa 826 (2114)
++..|...+ .++++|||+|++++|..+++.|++ |.++||||
T Consensus 336 la~~L~~~g-------------------------------------~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVA 378 (677)
T 3rc3_A 336 VSRQIEIRG-------------------------------------LESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVA 378 (677)
T ss_dssp HHHHHHHTT-------------------------------------CCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEE
T ss_pred HHHHHHhcC-------------------------------------CCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEe
Confidence 999887532 468899999999999999999999 99999999
Q ss_pred chHhhhhcCCCceEEEEeccee---ccCCCC-ccccCCHHHHHHhhcccCCCCCC-CceEEEEEcCCCcHHHHHHhh-cC
Q 000129 827 TATLAWGVNLPAHTVIIKGTQI---YNPEKG-AWTELSPLDIMQMLGRAGRPQYD-SYGEGIIITGHSELRYYLSLM-NQ 900 (2114)
Q Consensus 827 T~tla~GVdlP~v~vVI~~~~~---yd~~~g-~~~~~s~~~~~Qr~GRAGR~g~d-~~G~~iil~~~~e~~~~~~ll-~~ 900 (2114)
|+++++|||+ .+++||+.+.. ||+..+ +..++|..+|+||+|||||.|.+ ..|.|++++.. +...+.+++ ..
T Consensus 379 Tdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~-d~~~~~~~~~~~ 456 (677)
T 3rc3_A 379 TDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE-DLSLLKEILKRP 456 (677)
T ss_dssp CGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT-HHHHHHHHHHSC
T ss_pred CcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc-hHHHHHHHHhcC
Confidence 9999999999 67777764331 333211 24578999999999999999866 45887777655 444555554 34
Q ss_pred CCcccc
Q 000129 901 QLPIES 906 (2114)
Q Consensus 901 ~~pies 906 (2114)
..++++
T Consensus 457 ~~~i~~ 462 (677)
T 3rc3_A 457 VDPIRA 462 (677)
T ss_dssp CCCCCC
T ss_pred cchhhh
Confidence 456666
No 82
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.97 E-value=1.6e-29 Score=332.43 Aligned_cols=306 Identities=15% Similarity=0.208 Sum_probs=211.3
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000129 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2114)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (2114)
..+|+|+|.++++.++.+ .+++++||||+|||++|++++...+... +.+++||+|+++|+.|++++|.+
T Consensus 111 ~~~l~~~Q~~ai~~~~~~-~~~ll~~~tGsGKT~~~~~~~~~~~~~~----------~~~vlvl~P~~~L~~Q~~~~~~~ 179 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVN-RRRILNLPTSAGRSLIQALLARYYLENY----------EGKILIIVPTTALTTQMADDFVD 179 (510)
T ss_dssp EECCCHHHHHHHHHHHHH-SEEEEECCSTTTHHHHHHHHHHHHHHHC----------SSEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHHHHHhCC----------CCeEEEEECcHHHHHHHHHHHHH
Confidence 348999999999998876 5699999999999999999998877643 23899999999999999999988
Q ss_pred hhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHH
Q 000129 573 RLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVR 652 (2114)
Q Consensus 573 ~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~ 652 (2114)
+....++++..++|+.....+.....+|+|+||+. +.+.. ...++++++|||||+|++.. ..++.+
T Consensus 180 ~~~~~~~~v~~~~~~~~~~~~~~~~~~I~i~T~~~---l~~~~--~~~~~~~~liIiDE~H~~~~---~~~~~i------ 245 (510)
T 2oca_A 180 YRLFSHAMIKKIGGGASKDDKYKNDAPVVVGTWQT---VVKQP--KEWFSQFGMMMNDECHLATG---KSISSI------ 245 (510)
T ss_dssp TTSSCGGGEEECGGGCCTTGGGCTTCSEEEEEHHH---HTTSC--GGGGGGEEEEEEETGGGCCH---HHHHHH------
T ss_pred hhcCCccceEEEecCCccccccccCCcEEEEeHHH---Hhhch--hhhhhcCCEEEEECCcCCCc---ccHHHH------
Confidence 75555678899999877666555678999999995 33321 24677899999999999864 223322
Q ss_pred HHhhccccccEEEEccccCChH-H---HHHHHhccccCceEeecCC-----cccccceeEEEeeccC----------chh
Q 000129 653 QIETTKEHIRLVGLSATLPNYE-D---VALFLRVNLEKGLFYFDNS-----YRPVPLSQQYIGIQVK----------KPL 713 (2114)
Q Consensus 653 ~~~~~~~~~riv~lSATlpn~~-d---va~~l~~~~~~~~~~f~~~-----~rpv~l~~~~~~~~~~----------~~~ 713 (2114)
+.......++++||||+++.. + +..+++.. .+.+... -...+.....+.+... ...
T Consensus 246 -l~~~~~~~~~l~lSATp~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (510)
T 2oca_A 246 -ISGLNNCMFKFGLSGSLRDGKANIMQYVGMFGEI----FKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQ 320 (510)
T ss_dssp -GGGCTTCCEEEEEESCGGGCSSCHHHHHHHHCSE----ECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHH
T ss_pred -HHhcccCcEEEEEEeCCCCCcccHHHhHHhhCCe----EEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchH
Confidence 233456778999999986421 1 22222211 1111110 0001111111111111 001
Q ss_pred HHHHH------hhHHHHHHHHHHh--CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccC
Q 000129 714 QRFQL------MNDLCYEKVVAVA--GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVK 785 (2114)
Q Consensus 714 ~~~~~------~~~~~~~~i~~~~--~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~ 785 (2114)
..+.. -...+.+.+.... ++.++|||++ ++.+..++..|.+.+
T Consensus 321 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~---------------------------- 371 (510)
T 2oca_A 321 EEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEY---------------------------- 371 (510)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTC----------------------------
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcC----------------------------
Confidence 10000 1112233333332 2445666666 888877777776432
Q ss_pred cchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEec-hHhhhhcCCCceEEEEecceeccCCCCccccCCHHHH
Q 000129 786 SNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVST-ATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDI 864 (2114)
Q Consensus 786 ~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT-~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~ 864 (2114)
..+..+||+|+..+|..+++.|++|.++||||| +++++|+|+|++++||. ++++. |..+|
T Consensus 372 ---------~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~----~~~~~------s~~~~ 432 (510)
T 2oca_A 372 ---------DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVL----AHGVK------SKIIV 432 (510)
T ss_dssp ---------SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEE----SSCCC------SCCHH
T ss_pred ---------CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEE----eCCCC------CHHHH
Confidence 137788999999999999999999999999999 99999999999999998 45443 55689
Q ss_pred HHhhcccCCCCC
Q 000129 865 MQMLGRAGRPQY 876 (2114)
Q Consensus 865 ~Qr~GRAGR~g~ 876 (2114)
+||+|||||.|.
T Consensus 433 ~Q~~GR~gR~g~ 444 (510)
T 2oca_A 433 LQTIGRVLRKHG 444 (510)
T ss_dssp HHHHHHHHTTTC
T ss_pred HHHHhcccccCC
Confidence 999999999884
No 83
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.97 E-value=1.1e-30 Score=336.12 Aligned_cols=301 Identities=15% Similarity=0.112 Sum_probs=202.5
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
|+..++|+|. +++.+++++++++++||||||||++|++|++..+.. .+. +++|++||++||.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~--~~~--~~lvl~Ptr~La~Q~~~~l~------ 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL--RRL--RTLILAPTRVVAAEMEEALR------ 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH--TTC--CEEEEESSHHHHHHHHHHTT------
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh--cCC--cEEEECCCHHHHHHHHHHhc------
Confidence 5778999985 799999999988999999999999999999987765 233 89999999999999998764
Q ss_pred CCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhh
Q 000129 1418 LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQ 1497 (2114)
Q Consensus 1418 ~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~ 1497 (2114)
|..+....+.... .......|.++|++.+...+.+ ...+.++++||+||||++. .........+... .
T Consensus 70 -g~~v~~~~~~~~~--~~~~~~~i~~~t~~~l~~~l~~---~~~l~~~~~iViDEah~~~----~~~~~~~~~~~~~--~ 137 (451)
T 2jlq_A 70 -GLPIRYQTPAVKS--DHTGREIVDLMCHATFTTRLLS---STRVPNYNLIVMDEAHFTD----PCSVAARGYISTR--V 137 (451)
T ss_dssp -TSCEEECCTTCSC--CCCSSCCEEEEEHHHHHHHHHH---CSCCCCCSEEEEETTTCCS----HHHHHHHHHHHHH--H
T ss_pred -Cceeeeeeccccc--cCCCCceEEEEChHHHHHHhhC---cccccCCCEEEEeCCccCC----cchHHHHHHHHHh--h
Confidence 3444332222211 1223447999999997655543 3568899999999999872 2222222222111 1
Q ss_pred cCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCE
Q 000129 1498 VENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPA 1577 (2114)
Q Consensus 1498 ~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 1577 (2114)
...+.++|+||||++.. +..++.... .+.... +++| ...+. . .+..+. ...+++
T Consensus 138 ~~~~~~~i~~SAT~~~~--~~~~~~~~~-~~~~~~---~~~p---------~~~~~----~----~~~~l~---~~~~~~ 191 (451)
T 2jlq_A 138 EMGEAAAIFMTATPPGS--TDPFPQSNS-PIEDIE---REIP---------ERSWN----T----GFDWIT---DYQGKT 191 (451)
T ss_dssp HTTSCEEEEECSSCTTC--CCSSCCCSS-CEEEEE---CCCC---------SSCCS----S----SCHHHH---HCCSCE
T ss_pred cCCCceEEEEccCCCcc--chhhhcCCC-ceEecC---ccCC---------chhhH----H----HHHHHH---hCCCCE
Confidence 24579999999999652 111111100 001000 1111 11110 0 011121 236799
Q ss_pred EEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhc
Q 000129 1578 LVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA 1657 (2114)
Q Consensus 1578 LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~ 1657 (2114)
||||+|++.|+.++..|.. .+..+..+|+.+ +..+++.|++
T Consensus 192 lVF~~s~~~a~~l~~~L~~-----------------------------------~g~~~~~lh~~~----~~~~~~~f~~ 232 (451)
T 2jlq_A 192 VWFVPSIKAGNDIANCLRK-----------------------------------SGKRVIQLSRKT----FDTEYPKTKL 232 (451)
T ss_dssp EEECSSHHHHHHHHHHHHT-----------------------------------TTCCEEEECTTT----HHHHGGGGGS
T ss_pred EEEcCCHHHHHHHHHHHHH-----------------------------------cCCeEEECCHHH----HHHHHHhhcc
Confidence 9999999999999877632 134577888865 4679999999
Q ss_pred CCceEEEecCccccccCCCCcEEEE-Ee---eeEec--CCcCc----CCCCCHhHHHHhHcccCCCCCCCceEEEEEeec
Q 000129 1658 GKIKVCVMSSSMCWGVPLTAHLVVV-MG---TQYYD--GQENA----HTDYPVTDLLQMMGHASRPLLDNSGKCVILCHA 1727 (2114)
Q Consensus 1658 g~i~VLVaT~~la~Gvdip~~~vVI-~g---t~~yd--~~~~~----~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~ 1727 (2114)
|+++|||||+++++|+|+|+ .+|| .| ...|+ +.... ..|.+..+|+||+|||||.| ...|.|++++..
T Consensus 233 g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g-~~~g~~~~~~~~ 310 (451)
T 2jlq_A 233 TDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNP-AQEDDQYVFSGD 310 (451)
T ss_dssp SCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCT-TCCCEEEEECSC
T ss_pred CCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCC-CCCccEEEEeCC
Confidence 99999999999999999999 7777 11 11122 11111 27899999999999999985 337889888754
Q ss_pred C
Q 000129 1728 P 1728 (2114)
Q Consensus 1728 ~ 1728 (2114)
+
T Consensus 311 ~ 311 (451)
T 2jlq_A 311 P 311 (451)
T ss_dssp C
T ss_pred c
Confidence 3
No 84
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.96 E-value=2.8e-29 Score=330.05 Aligned_cols=305 Identities=17% Similarity=0.180 Sum_probs=215.3
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000129 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g 1419 (2114)
..|+|+|.++++.++.+ .++++++|||||||++|.+++...+.. ..+ ++|||+|+++|+.|++++++ +++...+
T Consensus 112 ~~l~~~Q~~ai~~~~~~-~~~ll~~~tGsGKT~~~~~~~~~~~~~--~~~--~vlvl~P~~~L~~Q~~~~~~-~~~~~~~ 185 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVN-RRRILNLPTSAGRSLIQALLARYYLEN--YEG--KILIIVPTTALTTQMADDFV-DYRLFSH 185 (510)
T ss_dssp ECCCHHHHHHHHHHHHH-SEEEEECCSTTTHHHHHHHHHHHHHHH--CSS--EEEEEESSHHHHHHHHHHHH-HTTSSCG
T ss_pred CCCCHHHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHHHHHhC--CCC--eEEEEECcHHHHHHHHHHHH-HhhcCCc
Confidence 37999999999999875 569999999999999999998887765 234 99999999999999999997 6665556
Q ss_pred cEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcC
Q 000129 1420 MRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVE 1499 (2114)
Q Consensus 1420 ~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~ 1499 (2114)
.++..++|+.+...+....++|+|+||+.+ .+. ....+.++++||+||+|++.. ..+..+...+.
T Consensus 186 ~~v~~~~~~~~~~~~~~~~~~I~i~T~~~l---~~~--~~~~~~~~~liIiDE~H~~~~----------~~~~~il~~~~ 250 (510)
T 2oca_A 186 AMIKKIGGGASKDDKYKNDAPVVVGTWQTV---VKQ--PKEWFSQFGMMMNDECHLATG----------KSISSIISGLN 250 (510)
T ss_dssp GGEEECGGGCCTTGGGCTTCSEEEEEHHHH---TTS--CGGGGGGEEEEEEETGGGCCH----------HHHHHHGGGCT
T ss_pred cceEEEecCCccccccccCCcEEEEeHHHH---hhc--hhhhhhcCCEEEEECCcCCCc----------ccHHHHHHhcc
Confidence 788899988776655556679999999964 322 234678899999999999863 22334445556
Q ss_pred CCceEEEEcccCCChh-H---HHHHhcCCCCceeecCCCC-----CccCcEEEEecccc----------cchHHHHHh--
Q 000129 1500 NKIRIVALSTSLANAK-D---LGEWIGATSHGLFNFPPGV-----RPVPLEIHIQGVDI----------TNFEARMQA-- 1558 (2114)
Q Consensus 1500 ~~~riV~lSATl~n~~-d---la~wl~~~~~~~~~f~~~~-----rpv~l~~~~~~~~~----------~~~~~~~~~-- 1558 (2114)
...++++||||+++.. + +..+++.. ++.+.... ...+..+....... ..+......
T Consensus 251 ~~~~~l~lSATp~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (510)
T 2oca_A 251 NCMFKFGLSGSLRDGKANIMQYVGMFGEI---FKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIIT 327 (510)
T ss_dssp TCCEEEEEESCGGGCSSCHHHHHHHHCSE---ECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHH
T ss_pred cCcEEEEEEeCCCCCcccHHHhHHhhCCe---EEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHh
Confidence 6789999999996542 2 33344322 22222210 01111111111111 112221100
Q ss_pred cC----HHHHHHHHHHhcCCC-CEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhc
Q 000129 1559 MT----KPTFTAIVQHAKNEK-PALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLR 1633 (2114)
Q Consensus 1559 ~~----~~~~~~i~~~l~~~~-~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~ 1633 (2114)
.. ......+......++ ++|||++ .+.|..++..|.. ..
T Consensus 328 ~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~-----------------------------------~~ 371 (510)
T 2oca_A 328 GLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKN-----------------------------------EY 371 (510)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHT-----------------------------------TC
T ss_pred ccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHH-----------------------------------cC
Confidence 01 112222333323344 4566665 7778777655522 11
Q ss_pred cceEeecCCCCHHHHHHHHHHHhcCCceEEEec-CccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCC
Q 000129 1634 HGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMS-SSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASR 1712 (2114)
Q Consensus 1634 ~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT-~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR 1712 (2114)
..+..+||+|+..+|..+++.|++|+++||||| +++++|+|+|++++|| .++.|.+..+|+||+|||||
T Consensus 372 ~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi----------~~~~~~s~~~~~Q~~GR~gR 441 (510)
T 2oca_A 372 DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVV----------LAHGVKSKIIVLQTIGRVLR 441 (510)
T ss_dssp SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEE----------ESSCCCSCCHHHHHHHHHHT
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEE----------EeCCCCCHHHHHHHHhcccc
Confidence 258999999999999999999999999999999 9999999999999999 77888999999999999999
Q ss_pred CC
Q 000129 1713 PL 1714 (2114)
Q Consensus 1713 ~~ 1714 (2114)
.|
T Consensus 442 ~g 443 (510)
T 2oca_A 442 KH 443 (510)
T ss_dssp TT
T ss_pred cC
Confidence 85
No 85
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.96 E-value=4.9e-29 Score=326.30 Aligned_cols=328 Identities=16% Similarity=0.131 Sum_probs=224.1
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
|| .|+|+|.++++.++.++ |..|+||+|||++|.+|++..... +. .++||+||++||.|.++.+. .+...
T Consensus 81 G~-~pt~VQ~~~ip~ll~G~---Iaea~TGeGKTlaf~LP~~l~aL~---g~--~vlVltptreLA~qd~e~~~-~l~~~ 150 (844)
T 1tf5_A 81 GM-FPFKVQLMGGVALHDGN---IAEMKTGEGKTLTSTLPVYLNALT---GK--GVHVVTVNEYLASRDAEQMG-KIFEF 150 (844)
T ss_dssp SC-CCCHHHHHHHHHHHTTS---EEECCTTSCHHHHHHHHHHHHHTT---SS--CEEEEESSHHHHHHHHHHHH-HHHHH
T ss_pred CC-CCcHHHHHhhHHHhCCC---EEEccCCcHHHHHHHHHHHHHHHc---CC--CEEEEeCCHHHHHHHHHHHH-HHHhh
Confidence 69 99999999999998865 899999999999999999844332 23 79999999999999998887 56666
Q ss_pred CCcEEEEEcCCcccchhhc-cCCcEEEEChhhH-HHHHhhhc----ccccccceeEEEeccccccc-CCC-Cch------
Q 000129 1418 LGMRVVELTGETAMDLKLL-EKGQIIISTPEKW-DALSRRWK----QRKYVQQVSLFIIDELHLIG-GQG-GPV------ 1483 (2114)
Q Consensus 1418 ~g~~v~~l~G~~~~~~~~l-~~~~IIV~TPe~l-~~l~r~~~----~~~~l~~v~liIiDEaH~l~-~~~-g~~------ 1483 (2114)
+|++|+.+.|+.+...+.. ..++|+|+||+++ ..+++... ....++.+.++|+||||.++ ++. .|.
T Consensus 151 lgl~v~~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~ 230 (844)
T 1tf5_A 151 LGLTVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQA 230 (844)
T ss_dssp TTCCEEECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEE
T ss_pred cCCeEEEEeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCc
Confidence 7999999999887654333 3579999999998 45555421 23457889999999999876 431 110
Q ss_pred --HHHHHHHHHHHHhhcC---------CCceEE-----------------EEcccCCCh-hHH-----HHHh-cCCCCce
Q 000129 1484 --LEVIVSRMRYIASQVE---------NKIRIV-----------------ALSTSLANA-KDL-----GEWI-GATSHGL 1528 (2114)
Q Consensus 1484 --le~i~srl~~i~~~~~---------~~~riV-----------------~lSATl~n~-~dl-----a~wl-~~~~~~~ 1528 (2114)
-..+...+..+..+++ +..++. ++|||.+.. ..+ +..+ ......+
T Consensus 231 ~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYi 310 (844)
T 1tf5_A 231 AKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYV 310 (844)
T ss_dssp ECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEE
T ss_pred ccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceE
Confidence 0123445555656554 345665 788886421 122 1111 1111111
Q ss_pred ee---------c--------------------------------------------------------------------
Q 000129 1529 FN---------F-------------------------------------------------------------------- 1531 (2114)
Q Consensus 1529 ~~---------f-------------------------------------------------------------------- 1531 (2114)
+. |
T Consensus 311 v~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l 390 (844)
T 1tf5_A 311 VEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNM 390 (844)
T ss_dssp EETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCC
T ss_pred EecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCC
Confidence 00 0
Q ss_pred ----CCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCccccc
Q 000129 1532 ----PPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSA 1607 (2114)
Q Consensus 1532 ----~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~ 1607 (2114)
-|..+|+.-. .............. ..+...+......+.|+||||+|++.|+.++..|..
T Consensus 391 ~vv~IPtn~p~~r~-d~~d~v~~~~~~K~----~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~----------- 454 (844)
T 1tf5_A 391 QVVTIPTNRPVVRD-DRPDLIYRTMEGKF----KAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKN----------- 454 (844)
T ss_dssp CEEECCCSSCCCCE-ECCCEEESSHHHHH----HHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHT-----------
T ss_pred ceEEecCCCCcccc-cCCcEEEeCHHHHH----HHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHH-----------
Confidence 0000110000 00000000000011 111222222224578999999999999999877632
Q ss_pred ccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCC--------CcE
Q 000129 1608 FLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLT--------AHL 1679 (2114)
Q Consensus 1608 ~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip--------~~~ 1679 (2114)
.+..+..+||++++.+|..+.+.|+.| +|+|||++++||+|++ +..
T Consensus 455 ------------------------~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl 508 (844)
T 1tf5_A 455 ------------------------KGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGL 508 (844)
T ss_dssp ------------------------TTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSE
T ss_pred ------------------------CCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCc
Confidence 234578899999999998887777666 6999999999999999 889
Q ss_pred EEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCc
Q 000129 1680 VVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1680 vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~ 1729 (2114)
+|| +++.|.+...|.||+||+||. |.+|.++.|++..+
T Consensus 509 ~VI----------n~d~p~s~r~y~hr~GRTGRq--G~~G~s~~~vs~eD 546 (844)
T 1tf5_A 509 AVV----------GTERHESRRIDNQLRGRSGRQ--GDPGITQFYLSMED 546 (844)
T ss_dssp EEE----------ESSCCSSHHHHHHHHTTSSGG--GCCEEEEEEEETTS
T ss_pred EEE----------EecCCCCHHHHHhhcCccccC--CCCCeEEEEecHHH
Confidence 999 899999999999999999998 78999999988665
No 86
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.96 E-value=2.2e-28 Score=318.82 Aligned_cols=352 Identities=16% Similarity=0.132 Sum_probs=223.0
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
|+ .|+++|..+++.++.++ |..++||+|||++|.+|++..... +..+++++||++||.|.++.+.
T Consensus 72 g~-~p~~VQ~~~i~~ll~G~---Iaem~TGsGKTlaf~LP~l~~~l~-----------g~~vlVltPTreLA~Q~~e~~~ 136 (853)
T 2fsf_A 72 GM-RHFDVQLLGGMVLNERC---IAEMRTGEGKTLTATLPAYLNALT-----------GKGVHVVTVNDYLAQRDAENNR 136 (853)
T ss_dssp SC-CCCHHHHHHHHHHHSSE---EEECCTTSCHHHHHHHHHHHHHTT-----------SSCCEEEESSHHHHHHHHHHHH
T ss_pred CC-CCChHHHhhcccccCCe---eeeecCCchHHHHHHHHHHHHHHc-----------CCcEEEEcCCHHHHHHHHHHHH
Confidence 54 89999999999988774 999999999999999999865432 2369999999999999999999
Q ss_pred HhhccCCcEEEEEeCCCccChhh-hccceEEEcCHhHH--HHHHhccC---CCcccccccEEEEecccccc-cC-Cc---
Q 000129 572 NRLQMYDVKVRELSGDQTLTRQQ-IEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLLH-DN-RG--- 640 (2114)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~~~-~~~~~IiV~TPek~--d~l~r~~~---~~~~l~~v~liIiDEaH~l~-d~-rg--- 640 (2114)
.++..+|++|+.++|+.+...+. ...++|+|+||+++ |.+..+.. ....++.++++|+||||.++ |. +.
T Consensus 137 ~l~~~lgl~v~~i~GG~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLI 216 (853)
T 2fsf_A 137 PLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLI 216 (853)
T ss_dssp HHHHHTTCCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEE
T ss_pred HHHHhcCCeEEEEeCCCCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCccccc
Confidence 99999999999999998754332 34689999999995 66655431 12456889999999999987 42 22
Q ss_pred ------------hhHHHHHHHHHHHH-------------hhccccccEE------------------------EEccccC
Q 000129 641 ------------PVLESIVARTVRQI-------------ETTKEHIRLV------------------------GLSATLP 671 (2114)
Q Consensus 641 ------------~~le~iv~rl~~~~-------------~~~~~~~riv------------------------~lSATlp 671 (2114)
..+..|+..+.... ..-....+++ ++|||.+
T Consensus 217 iSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~ 296 (853)
T 2fsf_A 217 ISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANI 296 (853)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred ccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccc
Confidence 23444544442100 0000112221 7788865
Q ss_pred C-hHHHHHHHhc-------------------------------------------------cccCc--------------
Q 000129 672 N-YEDVALFLRV-------------------------------------------------NLEKG-------------- 687 (2114)
Q Consensus 672 n-~~dva~~l~~-------------------------------------------------~~~~~-------------- 687 (2114)
. ...+...+.+ .+...
T Consensus 297 ~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y 376 (853)
T 2fsf_A 297 MLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLY 376 (853)
T ss_dssp ------------------------------------------------------------CCCCCEEEEEEEHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhh
Confidence 2 1111110000 00000
Q ss_pred -----------------------eEeecCCcccccceeE--EEeeccCchhHHHHHhhHHHHHHHHHH-hCCCeEEEEec
Q 000129 688 -----------------------LFYFDNSYRPVPLSQQ--YIGIQVKKPLQRFQLMNDLCYEKVVAV-AGKHQVLIFVH 741 (2114)
Q Consensus 688 -----------------------~~~f~~~~rpv~l~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~vLVFv~ 741 (2114)
-++.-+..+|+.-... ++. .....++.++. ..+.+. ..+.|+||||+
T Consensus 377 ~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~---~~~~~K~~al~----~~i~~~~~~gqpvLVft~ 449 (853)
T 2fsf_A 377 EKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVY---MTEAEKIQAII----EDIKERTAKGQPVLVGTI 449 (853)
T ss_dssp SEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEE---SSHHHHHHHHH----HHHHHHHTTTCCEEEEES
T ss_pred hhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEE---eCHHHHHHHHH----HHHHHHhcCCCCEEEEEC
Confidence 0001112222211110 111 11222333322 223332 34678999999
Q ss_pred ChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCc
Q 000129 742 SRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV 821 (2114)
Q Consensus 742 sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i 821 (2114)
|+..++.++..|...++.. ..+||.+...+|..+.++|+.|
T Consensus 450 sie~se~Ls~~L~~~gi~~-------------------------------------~vLnak~~~rEa~iia~agr~G-- 490 (853)
T 2fsf_A 450 SIEKSELVSNELTKAGIKH-------------------------------------NVLNAKFHANEAAIVAQAGYPA-- 490 (853)
T ss_dssp SHHHHHHHHHHHHHTTCCC-------------------------------------EECCTTCHHHHHHHHHTTTSTT--
T ss_pred cHHHHHHHHHHHHHCCCCE-------------------------------------EEecCChhHHHHHHHHhcCCCC--
Confidence 9999999999998876543 3459999999999999999988
Q ss_pred eEEEechHhhhhcCCCc--------------------------------e-----EEEEecceeccCCCCccccCCHHHH
Q 000129 822 QVLVSTATLAWGVNLPA--------------------------------H-----TVIIKGTQIYNPEKGAWTELSPLDI 864 (2114)
Q Consensus 822 ~VLVaT~tla~GVdlP~--------------------------------v-----~vVI~~~~~yd~~~g~~~~~s~~~~ 864 (2114)
.|+|||++++||+|++. + .+||+ |+.+. |...|
T Consensus 491 ~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~----te~pe------s~riy 560 (853)
T 2fsf_A 491 AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIG----TERHE------SRRID 560 (853)
T ss_dssp CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEE----SSCCS------SHHHH
T ss_pred eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEE----ccCCC------CHHHH
Confidence 69999999999999997 3 68998 66554 77899
Q ss_pred HHhhcccCCCCCCCceEEEEEcCCCcH-------HHHHHhh-----cCCCcccchhhHhhHHHH
Q 000129 865 MQMLGRAGRPQYDSYGEGIIITGHSEL-------RYYLSLM-----NQQLPIESQFVSKLADQL 916 (2114)
Q Consensus 865 ~Qr~GRAGR~g~d~~G~~iil~~~~e~-------~~~~~ll-----~~~~pies~l~~~l~d~l 916 (2114)
.||+||+||.| .+|.++.+++..+. +.+..++ ....||++....+..+..
T Consensus 561 ~qr~GRTGRqG--d~G~s~~fls~eD~l~r~f~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~a 622 (853)
T 2fsf_A 561 NQLRGRSGRQG--DAGSSRFYLSMEDALMRIFASDRVSGMMRKLGMKPGEAIEHPWVTKAIANA 622 (853)
T ss_dssp HHHHTTSSGGG--CCEEEEEEEETTSGGGGTTCCHHHHTTGGGGCCCTTCCCCCHHHHHHHHHH
T ss_pred HhhccccccCC--CCeeEEEEecccHHHHHHhhHHHHHHHHHhhCCCCccccchHHHHHHHHHH
Confidence 99999999987 78999888776541 2222222 234678888776655433
No 87
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.96 E-value=3.4e-29 Score=325.98 Aligned_cols=302 Identities=17% Similarity=0.192 Sum_probs=212.0
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.|+|+|.++++.+++++ ++++++|||||||++|+.++... ++ ++||++|+++|+.|+++++++ | |.
T Consensus 93 ~l~~~Q~~ai~~i~~~~-~~ll~~~TGsGKT~~~l~~i~~~------~~--~~Lvl~P~~~L~~Q~~~~~~~-~----~~ 158 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDK-RGCIVLPTGSGKTHVAMAAINEL------ST--PTLIVVPTLALAEQWKERLGI-F----GE 158 (472)
T ss_dssp CBCHHHHHHHHHHTTTT-EEEEECCTTSCHHHHHHHHHHHH------CS--CEEEEESSHHHHHHHHHHGGG-G----CG
T ss_pred CcCHHHHHHHHHHHhcC-CEEEEeCCCCCHHHHHHHHHHHc------CC--CEEEEECCHHHHHHHHHHHHh-C----CC
Confidence 79999999999998754 59999999999999998888753 33 899999999999999998874 5 56
Q ss_pred E-EEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcC
Q 000129 1421 R-VVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVE 1499 (2114)
Q Consensus 1421 ~-v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~ 1499 (2114)
+ ++.++|+... ..+|+|+||+.+......+ ..++++||+||+|.+.+.. +..+ ... -
T Consensus 159 ~~v~~~~g~~~~------~~~Ivv~T~~~l~~~~~~~-----~~~~~liIvDEaH~~~~~~---~~~~-------~~~-~ 216 (472)
T 2fwr_A 159 EYVGEFSGRIKE------LKPLTVSTYDSAYVNAEKL-----GNRFMLLIFDEVHHLPAES---YVQI-------AQM-S 216 (472)
T ss_dssp GGEEEBSSSCBC------CCSEEEEEHHHHHHTHHHH-----TTTCSEEEEETGGGTTSTT---THHH-------HHT-C
T ss_pred cceEEECCCcCC------cCCEEEEEcHHHHHHHHHh-----cCCCCEEEEECCcCCCChH---HHHH-------HHh-c
Confidence 7 8888887653 4689999999876544331 2458999999999987543 2221 122 2
Q ss_pred CCceEEEEcccCCChh----HHHHHhcCCCCc--eeec----CCCCCccCcEEEEeccc---------------------
Q 000129 1500 NKIRIVALSTSLANAK----DLGEWIGATSHG--LFNF----PPGVRPVPLEIHIQGVD--------------------- 1548 (2114)
Q Consensus 1500 ~~~riV~lSATl~n~~----dla~wl~~~~~~--~~~f----~~~~rpv~l~~~~~~~~--------------------- 1548 (2114)
...++++||||+.+.. .+..+++..... ...+ .+......+.+......
T Consensus 217 ~~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (472)
T 2fwr_A 217 IAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGIT 296 (472)
T ss_dssp CCSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCT
T ss_pred CCCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 4678999999997532 345555432100 0000 00111111111100000
Q ss_pred ---ccchH----------------------HHHHhcCH---HHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhcc
Q 000129 1549 ---ITNFE----------------------ARMQAMTK---PTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSM 1600 (2114)
Q Consensus 1549 ---~~~~~----------------------~~~~~~~~---~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~ 1600 (2114)
...+. ........ .....++.. ..++++||||+++..+..++..|
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~k~lvF~~~~~~~~~l~~~l------ 369 (472)
T 2fwr_A 297 LRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER-HRKDKIIIFTRHNELVYRISKVF------ 369 (472)
T ss_dssp TTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH-TSSSCBCCBCSCHHHHHHHHHHT------
T ss_pred ccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh-CCCCcEEEEECCHHHHHHHHHHh------
Confidence 00000 00000011 111222222 45789999999999987777433
Q ss_pred CCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEE
Q 000129 1601 DGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLV 1680 (2114)
Q Consensus 1601 ~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~v 1680 (2114)
++..+||+++..+|..+++.|++|.++|||||+++++|+|+|++.+
T Consensus 370 ----------------------------------~~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~ 415 (472)
T 2fwr_A 370 ----------------------------------LIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANV 415 (472)
T ss_dssp ----------------------------------TCCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSE
T ss_pred ----------------------------------CcceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcE
Confidence 3667999999999999999999999999999999999999999999
Q ss_pred EEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCC-CceEEEEEeecCc
Q 000129 1681 VVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLD-NSGKCVILCHAPR 1729 (2114)
Q Consensus 1681 VI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~-~~G~~iil~~~~~ 1729 (2114)
|| +++.|.+...|+||+|||||.|.+ ..+.++.++....
T Consensus 416 Vi----------~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t 455 (472)
T 2fwr_A 416 GV----------IMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGT 455 (472)
T ss_dssp EE----------EECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSC
T ss_pred EE----------EECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCC
Confidence 99 677889999999999999999755 5667777777653
No 88
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.96 E-value=1.3e-29 Score=335.37 Aligned_cols=298 Identities=15% Similarity=0.134 Sum_probs=202.2
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000129 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2114)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (2114)
...++|+|+.+++. +..+++++++||||||||++|++|+++.+... +.++||++|||+||.|+++.+.
T Consensus 169 ~~~~lpiq~~~i~~-l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~----------~~~vLvl~PtreLa~Qi~~~l~- 236 (618)
T 2whx_A 169 ERIGEPDYEVDEDI-FRKKRLTIMDLHPGAGKTKRILPSIVREALKR----------RLRTLILAPTRVVAAEMEEALR- 236 (618)
T ss_dssp CCCCCCCCCCCGGG-GSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT----------TCCEEEEESSHHHHHHHHHHTT-
T ss_pred cccCCCccccCHHH-HhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC----------CCeEEEEcChHHHHHHHHHHhc-
Confidence 57788998887665 45567799999999999999999999887652 2479999999999999998875
Q ss_pred hhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHH
Q 000129 573 RLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVR 652 (2114)
Q Consensus 573 ~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~ 652 (2114)
+..+. +.+.. ..........+.++|.+.+....... ..++++++|||||||++...+...+..+..++
T Consensus 237 -----~~~v~-~~~~~-l~~~~tp~~~i~~~t~~~l~~~l~~~---~~l~~~~~iViDEah~~~~~~~~~~~~i~~~l-- 304 (618)
T 2whx_A 237 -----GLPIR-YQTPA-VKSDHTGREIVDLMCHATFTTRLLSS---TRVPNYNLIVMDEAHFTDPCSVAARGYISTRV-- 304 (618)
T ss_dssp -----TSCEE-ECCTT-SSCCCCSSSCEEEEEHHHHHHHHHHC---SSCCCCSEEEEESTTCCSHHHHHHHHHHHHHH--
T ss_pred -----CCcee-Eeccc-ceeccCCCceEEEEChHHHHHHHhcc---ccccCCeEEEEECCCCCCccHHHHHHHHHHHh--
Confidence 23344 23221 11111234567778888653222221 35788999999999998323444455444433
Q ss_pred HHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhC
Q 000129 653 QIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAG 732 (2114)
Q Consensus 653 ~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 732 (2114)
...+.|+++||||+++. +..|...+ ...+..... +.... ...+. ..+.+ .
T Consensus 305 ----~~~~~q~il~SAT~~~~--~~~~~~~~--~~~~~v~~~------------~~~~~----~~~ll----~~l~~--~ 354 (618)
T 2whx_A 305 ----EMGEAAAIFMTATPPGS--TDPFPQSN--SPIEDIERE------------IPERS----WNTGF----DWITD--Y 354 (618)
T ss_dssp ----HHTSCEEEEECSSCTTC--CCSSCCCS--SCEEEEECC------------CCSSC----CSSSC----HHHHH--C
T ss_pred ----cccCccEEEEECCCchh--hhhhhccC--Cceeeeccc------------CCHHH----HHHHH----HHHHh--C
Confidence 12578999999998753 21222211 011111110 00000 01111 11222 2
Q ss_pred CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHH
Q 000129 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (2114)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v 812 (2114)
.+++||||+|++.|+.++..|...+. .+..+||. +|..+
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~g~-------------------------------------~v~~lhg~----~R~~~ 393 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKSGK-------------------------------------RVIQLSRK----TFDTE 393 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHTTC-------------------------------------CEEEECTT----THHHH
T ss_pred CCCEEEEECChhHHHHHHHHHHHcCC-------------------------------------cEEEEChH----HHHHH
Confidence 67999999999999999999886432 25667874 78889
Q ss_pred HHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCC-----CCc-----cccCCHHHHHHhhcccCCCCCCCceEE
Q 000129 813 EDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPE-----KGA-----WTELSPLDIMQMLGRAGRPQYDSYGEG 882 (2114)
Q Consensus 813 ~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~-----~g~-----~~~~s~~~~~Qr~GRAGR~g~d~~G~~ 882 (2114)
++.|++|.++|||||+++++|||+| +++||+....++|. .++ -.+.|..+|+||+|||||.|. ..|.+
T Consensus 394 l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~-~~G~a 471 (618)
T 2whx_A 394 YPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPA-QEDDQ 471 (618)
T ss_dssp TTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTT-CCCEE
T ss_pred HHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCC-CCCeE
Confidence 9999999999999999999999998 88887765544431 000 124699999999999999862 47899
Q ss_pred EEEcC
Q 000129 883 IIITG 887 (2114)
Q Consensus 883 iil~~ 887 (2114)
+++++
T Consensus 472 i~l~~ 476 (618)
T 2whx_A 472 YVFSG 476 (618)
T ss_dssp EEECS
T ss_pred EEEcc
Confidence 99987
No 89
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.96 E-value=2e-29 Score=324.93 Aligned_cols=289 Identities=16% Similarity=0.136 Sum_probs=182.9
Q ss_pred HHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEE
Q 000129 505 KSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVREL 584 (2114)
Q Consensus 505 ~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l 584 (2114)
+.++.++++++++||||||||++|++|+++.+... +.++||++|||+||.|+++.+. |..+...
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~----------~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~ 78 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ----------RLRTAVLAPTRVVAAEMAEALR------GLPVRYQ 78 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT----------TCCEEEEECSHHHHHHHHHHTT------TSCEEEC
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC----------CCcEEEECchHHHHHHHHHHhc------CceEeEE
Confidence 56678888999999999999999999999887642 2479999999999999999885 3334333
Q ss_pred eCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEE
Q 000129 585 SGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLV 664 (2114)
Q Consensus 585 ~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv 664 (2114)
.+.... .......+.++|.+.+. +.......++++++|||||||.+.......+.. +.. . ......|+|
T Consensus 79 ~~~~~~--~~t~~~~i~~~~~~~l~---~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~----~~~-~-~~~~~~~~i 147 (459)
T 2z83_A 79 TSAVQR--EHQGNEIVDVMCHATLT---HRLMSPNRVPNYNLFVMDEAHFTDPASIAARGY----IAT-K-VELGEAAAI 147 (459)
T ss_dssp C----------CCCSEEEEEHHHHH---HHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHH----HHH-H-HHTTSCEEE
T ss_pred eccccc--CCCCCcEEEEEchHHHH---HHhhccccccCCcEEEEECCccCCchhhHHHHH----HHH-H-hccCCccEE
Confidence 322111 11233457778887642 222122457889999999999752111111111 111 1 123678999
Q ss_pred EEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChH
Q 000129 665 GLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRK 744 (2114)
Q Consensus 665 ~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~ 744 (2114)
+||||+|.. +..+. ....|+.... ..+....... .. ..+.+ .++++||||+|++
T Consensus 148 l~SAT~~~~--~~~~~------------~~~~pi~~~~--~~~~~~~~~~----~~----~~l~~--~~~~~LVF~~s~~ 201 (459)
T 2z83_A 148 FMTATPPGT--TDPFP------------DSNAPIHDLQ--DEIPDRAWSS----GY----EWITE--YAGKTVWFVASVK 201 (459)
T ss_dssp EECSSCTTC--CCSSC------------CCSSCEEEEE--CCCCSSCCSS----CC----HHHHH--CCSCEEEECSCHH
T ss_pred EEEcCCCcc--hhhhc------------cCCCCeEEec--ccCCcchhHH----HH----HHHHh--cCCCEEEEeCChH
Confidence 999998742 11111 1111111000 0011111000 01 11111 2679999999999
Q ss_pred HHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEE
Q 000129 745 ETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVL 824 (2114)
Q Consensus 745 ~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VL 824 (2114)
.++.++..|...+. .+..+||. +|..+++.|++|.++||
T Consensus 202 ~~~~l~~~L~~~g~-------------------------------------~v~~lh~~----~R~~~~~~f~~g~~~iL 240 (459)
T 2z83_A 202 MGNEIAMCLQRAGK-------------------------------------KVIQLNRK----SYDTEYPKCKNGDWDFV 240 (459)
T ss_dssp HHHHHHHHHHHTTC-------------------------------------CEEEESTT----CCCCCGGGSSSCCCSEE
T ss_pred HHHHHHHHHHhcCC-------------------------------------cEEecCHH----HHHHHHhhccCCCceEE
Confidence 99999999876432 24566874 78889999999999999
Q ss_pred EechHhhhhcCCCceEEEEeccee------ccCCCC----ccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCC
Q 000129 825 VSTATLAWGVNLPAHTVIIKGTQI------YNPEKG----AWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889 (2114)
Q Consensus 825 VaT~tla~GVdlP~v~vVI~~~~~------yd~~~g----~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~ 889 (2114)
|||+++++|||+|+ ++||+.... |+.... .-.+.|..+|+||+|||||.|. ..|.+++++..+
T Consensus 241 VaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~-~~G~~~~~~~~~ 313 (459)
T 2z83_A 241 ITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPN-QVGDEYHYGGAT 313 (459)
T ss_dssp EESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTT-CCCEEEEECSCC
T ss_pred EECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCC-CCCeEEEEEccc
Confidence 99999999999999 888873311 111100 0033589999999999999872 279999998774
No 90
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.96 E-value=3.2e-29 Score=321.02 Aligned_cols=272 Identities=17% Similarity=0.160 Sum_probs=173.6
Q ss_pred HHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeC
Q 000129 507 ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSG 586 (2114)
Q Consensus 507 ~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~G 586 (2114)
++..+++++++||||||||++|++|+++.+... +.+++|++||++||.|+++.+... + +...++
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~----------~~~~lil~Ptr~La~Q~~~~l~~~----~--v~~~~~ 67 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR----------RLRTLVLAPTRVVLSEMKEAFHGL----D--VKFHTQ 67 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT----------TCCEEEEESSHHHHHHHHHHTTTS----C--EEEESS
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc----------CCeEEEEcchHHHHHHHHHHHhcC----C--eEEecc
Confidence 345667899999999999999999999977653 247999999999999999887632 2 332222
Q ss_pred CCccChhhhccceEEEcCHhHH-H-----HHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhcccc
Q 000129 587 DQTLTRQQIEETQIIVTTPEKW-D-----IITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEH 660 (2114)
Q Consensus 587 d~~~~~~~~~~~~IiV~TPek~-d-----~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~ 660 (2114)
... .|+||+++ + .+.+.......++++++|||||+|++...+...+ ..+.... ...+
T Consensus 68 ~~~-----------~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~----~~~~~~~--~~~~ 130 (440)
T 1yks_A 68 AFS-----------AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAAR----GWAAHRA--RANE 130 (440)
T ss_dssp CCC-----------CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHH----HHHHHHH--HTTS
T ss_pred cce-----------eccCCccceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHH----HHHHHHh--ccCC
Confidence 211 36677653 1 2222333334578899999999999821221111 1111111 2357
Q ss_pred ccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEe
Q 000129 661 IRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFV 740 (2114)
Q Consensus 661 ~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv 740 (2114)
.++++||||++.. +..+.. ...|+ ......+....... . +..+.+ .++++||||
T Consensus 131 ~~~l~~SAT~~~~--~~~~~~------------~~~~~--~~~~~~~~~~~~~~----~----~~~l~~--~~~~~lVF~ 184 (440)
T 1yks_A 131 SATILMTATPPGT--SDEFPH------------SNGEI--EDVQTDIPSEPWNT----G----HDWILA--DKRPTAWFL 184 (440)
T ss_dssp CEEEEECSSCTTC--CCSSCC------------CSSCE--EEEECCCCSSCCSS----S----CHHHHH--CCSCEEEEC
T ss_pred ceEEEEeCCCCch--hhhhhh------------cCCCe--eEeeeccChHHHHH----H----HHHHHh--cCCCEEEEe
Confidence 9999999998642 111111 01111 11101111111001 0 111222 267999999
Q ss_pred cChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCC
Q 000129 741 HSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGH 820 (2114)
Q Consensus 741 ~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~ 820 (2114)
+|++.++.++..|...+ ..++.+|| .+|..+++.|++|+
T Consensus 185 ~s~~~a~~l~~~L~~~~-------------------------------------~~v~~lhg----~~R~~~~~~F~~g~ 223 (440)
T 1yks_A 185 PSIRAANVMAASLRKAG-------------------------------------KSVVVLNR----KTFEREYPTIKQKK 223 (440)
T ss_dssp SCHHHHHHHHHHHHHTT-------------------------------------CCEEECCS----SSCC--------CC
T ss_pred CCHHHHHHHHHHHHHcC-------------------------------------CCEEEecc----hhHHHHHhhhcCCC
Confidence 99999999999887642 23677898 47889999999999
Q ss_pred ceEEEechHhhhhcCCCceEEEEeccee---------------ccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEE
Q 000129 821 VQVLVSTATLAWGVNLPAHTVIIKGTQI---------------YNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885 (2114)
Q Consensus 821 i~VLVaT~tla~GVdlP~v~vVI~~~~~---------------yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil 885 (2114)
++|||||+++++|||+| +++||+.... |+. +.+..+|+||+|||||.| +..|.|+++
T Consensus 224 ~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~------p~~~~~~~Qr~GR~GR~g-~~~g~~~~l 295 (440)
T 1yks_A 224 PDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPL------RISASSAAQRRGRIGRNP-NRDGDSYYY 295 (440)
T ss_dssp CSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEE------ECCHHHHHHHHTTSSCCT-TCCCEEEEE
T ss_pred ceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeecccc------ccCHHHHHHhccccCCCC-CCCceEEEE
Confidence 99999999999999999 9988863221 333 348999999999999963 257999999
Q ss_pred c
Q 000129 886 T 886 (2114)
Q Consensus 886 ~ 886 (2114)
+
T Consensus 296 ~ 296 (440)
T 1yks_A 296 S 296 (440)
T ss_dssp C
T ss_pred e
Confidence 6
No 91
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.96 E-value=4.6e-29 Score=324.75 Aligned_cols=302 Identities=20% Similarity=0.199 Sum_probs=204.7
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHh
Q 000129 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~ 573 (2114)
..|+|+|.++++.++.++ ++++++|||+|||++|+.++... . .++||++|+++|+.|++++|.+
T Consensus 92 ~~l~~~Q~~ai~~i~~~~-~~ll~~~TGsGKT~~~l~~i~~~---~-----------~~~Lvl~P~~~L~~Q~~~~~~~- 155 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDK-RGCIVLPTGSGKTHVAMAAINEL---S-----------TPTLIVVPTLALAEQWKERLGI- 155 (472)
T ss_dssp CCBCHHHHHHHHHHTTTT-EEEEECCTTSCHHHHHHHHHHHH---C-----------SCEEEEESSHHHHHHHHHHGGG-
T ss_pred CCcCHHHHHHHHHHHhcC-CEEEEeCCCCCHHHHHHHHHHHc---C-----------CCEEEEECCHHHHHHHHHHHHh-
Confidence 379999999999887764 59999999999999999988764 1 2699999999999999999988
Q ss_pred hccCCcE-EEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHH
Q 000129 574 LQMYDVK-VRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVR 652 (2114)
Q Consensus 574 ~~~~gi~-v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~ 652 (2114)
+ |++ ++.++|+... ..+|+|+||+.+...... ..+++++|||||+|.+.+.. +..++.
T Consensus 156 ~---~~~~v~~~~g~~~~------~~~Ivv~T~~~l~~~~~~-----~~~~~~liIvDEaH~~~~~~---~~~~~~---- 214 (472)
T 2fwr_A 156 F---GEEYVGEFSGRIKE------LKPLTVSTYDSAYVNAEK-----LGNRFMLLIFDEVHHLPAES---YVQIAQ---- 214 (472)
T ss_dssp G---CGGGEEEBSSSCBC------CCSEEEEEHHHHHHTHHH-----HTTTCSEEEEETGGGTTSTT---THHHHH----
T ss_pred C---CCcceEEECCCcCC------cCCEEEEEcHHHHHHHHH-----hcCCCCEEEEECCcCCCChH---HHHHHH----
Confidence 3 788 9999987653 478999999986333221 22458999999999987632 222221
Q ss_pred HHhhccccccEEEEccccCChH----HHHHHHhccccC-ceEeecCCcccccceeEEEeeccCch---------------
Q 000129 653 QIETTKEHIRLVGLSATLPNYE----DVALFLRVNLEK-GLFYFDNSYRPVPLSQQYIGIQVKKP--------------- 712 (2114)
Q Consensus 653 ~~~~~~~~~riv~lSATlpn~~----dva~~l~~~~~~-~~~~f~~~~rpv~l~~~~~~~~~~~~--------------- 712 (2114)
.....++++||||+++.+ .+..+++..... ....+...+-+ +.....+.+.....
T Consensus 215 ----~~~~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (472)
T 2fwr_A 215 ----MSIAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLA-KYTIKRIFVPLAEDERVEYEKREKVYKQF 289 (472)
T ss_dssp ----TCCCSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCC-SEEECCEEECCCHHHHHHTTTTTHHHHSC
T ss_pred ----hcCCCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCC-CeEEEEEEcCCCHHHHHHHHHHHHHHHHH
Confidence 224678899999976422 233333211000 00000000000 00000000000000
Q ss_pred ------------------------------hH---HHH-------HhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHH
Q 000129 713 ------------------------------LQ---RFQ-------LMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARA 752 (2114)
Q Consensus 713 ------------------------------~~---~~~-------~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~ 752 (2114)
.. ... .-...+.+ +.....++++||||++++.+..++..
T Consensus 290 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~-~l~~~~~~k~lvF~~~~~~~~~l~~~ 368 (472)
T 2fwr_A 290 LRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLRE-ILERHRKDKIIIFTRHNELVYRISKV 368 (472)
T ss_dssp SSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHH-HHHHTSSSCBCCBCSCHHHHHHHHHH
T ss_pred HHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHH-HHHhCCCCcEEEEECCHHHHHHHHHH
Confidence 00 000 00011222 22334578999999999998888765
Q ss_pred HHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhh
Q 000129 753 IRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAW 832 (2114)
Q Consensus 753 L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~ 832 (2114)
|. +..+||+++..+|..+++.|++|.++|||||+++++
T Consensus 369 l~------------------------------------------~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~ 406 (472)
T 2fwr_A 369 FL------------------------------------------IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDE 406 (472)
T ss_dssp TT------------------------------------------CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCS
T ss_pred hC------------------------------------------cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhc
Confidence 41 334699999999999999999999999999999999
Q ss_pred hcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCC-CceEEEEEcCCCc
Q 000129 833 GVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD-SYGEGIIITGHSE 890 (2114)
Q Consensus 833 GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d-~~G~~iil~~~~e 890 (2114)
|+|+|++++||. |+++. ++..|+||+|||||.|.+ +...+|.+++.+.
T Consensus 407 Gldlp~~~~Vi~----~~~~~------s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t 455 (472)
T 2fwr_A 407 GIDVPDANVGVI----MSGSG------SAREYIQRLGRILRPSKGKKEAVLYELISRGT 455 (472)
T ss_dssp SSCSCCBSEEEE----ECCSS------CCHHHHHHHHHSBCCCTTTCCEEEEEEEECSC
T ss_pred CcccccCcEEEE----ECCCC------CHHHHHHHHhhccCCCCCCceEEEEEEEeCCC
Confidence 999999999998 66553 678999999999999854 4555666666543
No 92
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.96 E-value=1.5e-27 Score=310.81 Aligned_cols=355 Identities=17% Similarity=0.142 Sum_probs=238.3
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.|+ .|+++|..+++.++.++ |+.|+||+|||++|.+|++.....+ ..+++|+||+.||.|.++.+
T Consensus 108 lG~-rP~~VQ~~~ip~Ll~G~---Iaem~TGeGKTLa~~LP~~l~aL~g-----------~~v~VvTpTreLA~Qdae~m 172 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALHLGN---VAEMKTGEGKTLTCVLPAYLNALAG-----------NGVHIVTVNDYLAKRDSEWM 172 (922)
T ss_dssp HSC-CCCHHHHHHHHHHHTTE---EEECCTTSCHHHHTHHHHHHHHTTT-----------SCEEEEESSHHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHhHhcCC---EEEecCCCccHHHHHHHHHHHHHhC-----------CCeEEEeCCHHHHHHHHHHH
Confidence 477 99999999999888764 9999999999999999997544322 25999999999999999999
Q ss_pred HHhhccCCcEEEEEeCCCccChhh-hccceEEEcCHhHH--HHHHhccC---CCcccccccEEEEecccccc-cC-Cch-
Q 000129 571 SNRLQMYDVKVRELSGDQTLTRQQ-IEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLLH-DN-RGP- 641 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~-~~~~~IiV~TPek~--d~l~r~~~---~~~~l~~v~liIiDEaH~l~-d~-rg~- 641 (2114)
..++..+|++|+.++|+.+...+. ...++|+|+||+++ |.+..+.. ....++.+.++||||||.++ |+ |.|
T Consensus 173 ~~l~~~lGLsv~~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPL 252 (922)
T 1nkt_A 173 GRVHRFLGLQVGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPL 252 (922)
T ss_dssp HHHHHHTTCCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCE
T ss_pred HHHHhhcCCeEEEEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccce
Confidence 999999999999999987654332 34689999999996 76665531 23456789999999999887 42 322
Q ss_pred ----------hHHHHHHHHHHHHhh------ccccccEE-----------------EEccccCC-hHHHHHHHhcc----
Q 000129 642 ----------VLESIVARTVRQIET------TKEHIRLV-----------------GLSATLPN-YEDVALFLRVN---- 683 (2114)
Q Consensus 642 ----------~le~iv~rl~~~~~~------~~~~~riv-----------------~lSATlpn-~~dva~~l~~~---- 683 (2114)
.+...+.++...+.. -....+++ ++|||.+. ...+...+.+.
T Consensus 253 iiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~ 332 (922)
T 1nkt_A 253 IISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFS 332 (922)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCC
T ss_pred eecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhh
Confidence 122233333332210 01455666 78999764 23333322210
Q ss_pred -cc-----C-ceEeec---CCcc-----------------cccce---eEEEeec-------------------------
Q 000129 684 -LE-----K-GLFYFD---NSYR-----------------PVPLS---QQYIGIQ------------------------- 708 (2114)
Q Consensus 684 -~~-----~-~~~~f~---~~~r-----------------pv~l~---~~~~~~~------------------------- 708 (2114)
.. . .+...+ ..+- .+.+. +..-.++
T Consensus 333 ~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef 412 (922)
T 1nkt_A 333 RDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAEL 412 (922)
T ss_dssp BTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHH
T ss_pred cccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHH
Confidence 00 0 000011 0000 00000 0000000
Q ss_pred ------------c--------------CchhHHHHHhhHHHHHHHHH-HhCCCeEEEEecChHHHHHHHHHHHHHhhccc
Q 000129 709 ------------V--------------KKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVHSRKETAKTARAIRDTALEND 761 (2114)
Q Consensus 709 ------------~--------------~~~~~~~~~~~~~~~~~i~~-~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~ 761 (2114)
. .....++.. +...+.+ +..+.|+||||+|+..++.++..|...++..
T Consensus 413 ~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~a----l~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~- 487 (922)
T 1nkt_A 413 HEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIA----VVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPH- 487 (922)
T ss_dssp HHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHH----HHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCC-
T ss_pred HHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHH----HHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCE-
Confidence 0 011112222 2222333 2346789999999999999999998876543
Q ss_pred ccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCce--
Q 000129 762 TLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAH-- 839 (2114)
Q Consensus 762 ~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v-- 839 (2114)
..+||.+...+|..+.+.|+.| .|+|||++++||+|++..
T Consensus 488 ------------------------------------~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~ 529 (922)
T 1nkt_A 488 ------------------------------------NVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGN 529 (922)
T ss_dssp ------------------------------------EEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCC
T ss_pred ------------------------------------EEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCC
Confidence 4559999888888888889888 699999999999999964
Q ss_pred --------------------------------------------------EEEEecceeccCCCCccccCCHHHHHHhhc
Q 000129 840 --------------------------------------------------TVIIKGTQIYNPEKGAWTELSPLDIMQMLG 869 (2114)
Q Consensus 840 --------------------------------------------------~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~G 869 (2114)
.+||+ |+.+. |...|.||+|
T Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~----te~pe------s~riy~qr~G 599 (922)
T 1nkt_A 530 VDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLG----TERHE------SRRIDNQLRG 599 (922)
T ss_dssp HHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEE----CSCCS------SHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEe----ccCCC------CHHHHHHHhc
Confidence 68998 66554 7889999999
Q ss_pred ccCCCCCCCceEEEEEcCCCcHH-------HHHHh-----hcCCCcccchhhHhhHHH
Q 000129 870 RAGRPQYDSYGEGIIITGHSELR-------YYLSL-----MNQQLPIESQFVSKLADQ 915 (2114)
Q Consensus 870 RAGR~g~d~~G~~iil~~~~e~~-------~~~~l-----l~~~~pies~l~~~l~d~ 915 (2114)
|+||.| .+|.++.+++..+.- .+..+ +....||++.+..+..+.
T Consensus 600 RTGRqG--dpG~s~fflSleD~l~r~f~~~~~~~~~~~~~~~~~~~i~~~~~~~~ie~ 655 (922)
T 1nkt_A 600 RSGRQG--DPGESRFYLSLGDELMRRFNGAALETLLTRLNLPDDVPIEAKMVTRAIKS 655 (922)
T ss_dssp TSSGGG--CCEEEEEEEETTSHHHHHTTHHHHHHHHHHTTCCTTSCCCCHHHHHHHHH
T ss_pred ccccCC--CCeeEEEEechhHHHHHHhhhHHHHHHHHHhCCCCCcccccHHHHHHHHH
Confidence 999987 789999888765421 12222 234568888877655443
No 93
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.96 E-value=4e-29 Score=326.14 Aligned_cols=284 Identities=19% Similarity=0.160 Sum_probs=191.5
Q ss_pred HHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCc
Q 000129 500 QSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDV 579 (2114)
Q Consensus 500 Q~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi 579 (2114)
|++.+..++.++++++++||||||||.+|.+++++. +.+++|++|||+||.|+++++.+.+ +.
T Consensus 221 ~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~--------------g~~vLVl~PTReLA~Qia~~l~~~~---g~ 283 (666)
T 3o8b_A 221 DNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ--------------GYKVLVLNPSVAATLGFGAYMSKAH---GI 283 (666)
T ss_dssp CCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT--------------TCCEEEEESCHHHHHHHHHHHHHHH---SC
T ss_pred HHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC--------------CCeEEEEcchHHHHHHHHHHHHHHh---CC
Confidence 444455566677889999999999999999988752 2379999999999999999887755 55
Q ss_pred EEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccc
Q 000129 580 KVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKE 659 (2114)
Q Consensus 580 ~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~ 659 (2114)
.++..+|+... ...++|+|+||+++ +.+. ...++++++|||||||++...+...+.. ++..... ..
T Consensus 284 ~vg~~vG~~~~----~~~~~IlV~TPGrL--l~~~---~l~l~~l~~lVlDEAH~l~~~~~~~l~~----Il~~l~~-~~ 349 (666)
T 3o8b_A 284 DPNIRTGVRTI----TTGAPVTYSTYGKF--LADG---GCSGGAYDIIICDECHSTDSTTILGIGT----VLDQAET-AG 349 (666)
T ss_dssp CCEEECSSCEE----CCCCSEEEEEHHHH--HHTT---SCCTTSCSEEEETTTTCCSHHHHHHHHH----HHHHTTT-TT
T ss_pred CeeEEECcEec----cCCCCEEEECcHHH--HhCC---CcccCcccEEEEccchhcCccHHHHHHH----HHHhhhh-cC
Confidence 67778887553 34689999999985 3222 2456789999999999864333333333 3322221 12
Q ss_pred cccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEE
Q 000129 660 HIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIF 739 (2114)
Q Consensus 660 ~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVF 739 (2114)
...++++|||+|+. +... ..........+.+ ...+ .... .. .+...++++|||
T Consensus 350 ~~llil~SAT~~~~------i~~~-~p~i~~v~~~~~~---~i~~---~~~~-~~-------------l~~~~~~~vLVF 402 (666)
T 3o8b_A 350 ARLVVLATATPPGS------VTVP-HPNIEEVALSNTG---EIPF---YGKA-IP-------------IEAIRGGRHLIF 402 (666)
T ss_dssp CSEEEEEESSCTTC------CCCC-CTTEEEEECBSCS---SEEE---TTEE-EC-------------GGGSSSSEEEEE
T ss_pred CceEEEECCCCCcc------cccC-CcceEEEeecccc---hhHH---HHhh-hh-------------hhhccCCcEEEE
Confidence 23378889999862 1100 0001111000000 0000 0000 00 012247899999
Q ss_pred ecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCC
Q 000129 740 VHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDG 819 (2114)
Q Consensus 740 v~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g 819 (2114)
|+|++.++.+++.|...+ ..+..+||+|++++ |+++
T Consensus 403 v~Tr~~ae~la~~L~~~g-------------------------------------~~v~~lHG~l~q~e-------r~~~ 438 (666)
T 3o8b_A 403 CHSKKKCDELAAKLSGLG-------------------------------------INAVAYYRGLDVSV-------IPTI 438 (666)
T ss_dssp CSCHHHHHHHHHHHHTTT-------------------------------------CCEEEECTTSCGGG-------SCSS
T ss_pred eCCHHHHHHHHHHHHhCC-------------------------------------CcEEEecCCCCHHH-------HHhC
Confidence 999999999999887532 23678899999875 4566
Q ss_pred CceEEEechHhhhhcCCCceEEEEecc----e--e--ccCCCCc---cccCCHHHHHHhhcccCCCCCCCceEEEEEcCC
Q 000129 820 HVQVLVSTATLAWGVNLPAHTVIIKGT----Q--I--YNPEKGA---WTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2114)
Q Consensus 820 ~i~VLVaT~tla~GVdlP~v~vVI~~~----~--~--yd~~~g~---~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2114)
..+|||||+++++|||+| +++||+.. . - |||..+. ..+.|..+|+||+||||| | ..|. |.+++.
T Consensus 439 ~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g--~~G~-i~lvt~ 513 (666)
T 3o8b_A 439 GDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-G--RRGI-YRFVTP 513 (666)
T ss_dssp SCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-S--SCEE-EEESCC
T ss_pred CCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-C--CCCE-EEEEec
Confidence 779999999999999998 88888532 0 1 4443221 145689999999999999 5 6798 888877
Q ss_pred Cc
Q 000129 889 SE 890 (2114)
Q Consensus 889 ~e 890 (2114)
.+
T Consensus 514 ~e 515 (666)
T 3o8b_A 514 GE 515 (666)
T ss_dssp CC
T ss_pred ch
Confidence 55
No 94
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.95 E-value=1.1e-28 Score=316.23 Aligned_cols=277 Identities=17% Similarity=0.169 Sum_probs=178.3
Q ss_pred HcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccch
Q 000129 1354 YNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL 1433 (2114)
Q Consensus 1354 l~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~ 1433 (2114)
+..++|++++||||||||++|++|+++.+... +. +++|++||++||.|+++.++ +..+...++...
T Consensus 5 l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~--~~--~~lil~Ptr~La~Q~~~~l~-------~~~v~~~~~~~~--- 70 (440)
T 1yks_A 5 LKKGMTTVLDFHPGAGKTRRFLPQILAECARR--RL--RTLVLAPTRVVLSEMKEAFH-------GLDVKFHTQAFS--- 70 (440)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TC--CEEEEESSHHHHHHHHHHTT-------TSCEEEESSCCC---
T ss_pred hhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc--CC--eEEEEcchHHHHHHHHHHHh-------cCCeEEecccce---
Confidence 34577899999999999999999999987662 33 89999999999999998776 223333322211
Q ss_pred hhccCCcEEEEChhhHHH------HHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEE
Q 000129 1434 KLLEKGQIIISTPEKWDA------LSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVAL 1507 (2114)
Q Consensus 1434 ~~l~~~~IIV~TPe~l~~------l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~l 1507 (2114)
.++||+++.. +.+++.....++++++||+||+|.+. ..+...+..+..+.. ..+.++++|
T Consensus 71 --------~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~----~~~~~~~~~~~~~~~--~~~~~~l~~ 136 (440)
T 1yks_A 71 --------AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLD----PASIAARGWAAHRAR--ANESATILM 136 (440)
T ss_dssp --------CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCS----HHHHHHHHHHHHHHH--TTSCEEEEE
T ss_pred --------eccCCccceeeecccchhHhhhCcccccCccEEEEECccccC----cchHHHHHHHHHHhc--cCCceEEEE
Confidence 3666665432 22333334458899999999999982 222222222222221 357999999
Q ss_pred cccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHH
Q 000129 1508 STSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYV 1587 (2114)
Q Consensus 1508 SATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a 1587 (2114)
|||++... .. +... +.++............ ...+..+. ..++++||||++++.|
T Consensus 137 SAT~~~~~--~~-----------~~~~--~~~~~~~~~~~~~~~~--------~~~~~~l~---~~~~~~lVF~~s~~~a 190 (440)
T 1yks_A 137 TATPPGTS--DE-----------FPHS--NGEIEDVQTDIPSEPW--------NTGHDWIL---ADKRPTAWFLPSIRAA 190 (440)
T ss_dssp CSSCTTCC--CS-----------SCCC--SSCEEEEECCCCSSCC--------SSSCHHHH---HCCSCEEEECSCHHHH
T ss_pred eCCCCchh--hh-----------hhhc--CCCeeEeeeccChHHH--------HHHHHHHH---hcCCCEEEEeCCHHHH
Confidence 99996431 01 1111 1111111111111110 01112222 2478999999999999
Q ss_pred HHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecC
Q 000129 1588 RLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSS 1667 (2114)
Q Consensus 1588 ~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~ 1667 (2114)
..++..|.. .+..+..+|| .+|..+++.|++|+++|||||+
T Consensus 191 ~~l~~~L~~-----------------------------------~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~ 231 (440)
T 1yks_A 191 NVMAASLRK-----------------------------------AGKSVVVLNR----KTFEREYPTIKQKKPDFILATD 231 (440)
T ss_dssp HHHHHHHHH-----------------------------------TTCCEEECCS----SSCC--------CCCSEEEESS
T ss_pred HHHHHHHHH-----------------------------------cCCCEEEecc----hhHHHHHhhhcCCCceEEEECC
Confidence 999876632 1346899999 5788999999999999999999
Q ss_pred ccccccCCCCcEEEE-EeeeE---e-cCC----cCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEe
Q 000129 1668 SMCWGVPLTAHLVVV-MGTQY---Y-DGQ----ENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILC 1725 (2114)
Q Consensus 1668 ~la~Gvdip~~~vVI-~gt~~---y-d~~----~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~ 1725 (2114)
++++|||+| +.+|| .|+.+ | +.. .+++.|.+..+|+||+|||||.| +..|.|++++
T Consensus 232 v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g-~~~g~~~~l~ 296 (440)
T 1yks_A 232 IAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNP-NRDGDSYYYS 296 (440)
T ss_dssp STTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCT-TCCCEEEEEC
T ss_pred hhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCC-CCCceEEEEe
Confidence 999999999 77776 34422 1 111 13667899999999999999964 5789999996
No 95
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.95 E-value=2.2e-29 Score=334.74 Aligned_cols=290 Identities=16% Similarity=0.162 Sum_probs=188.2
Q ss_pred CCCHHHH-----HHHHHHH-----cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHH
Q 000129 495 QLNRVQS-----RVYKSAL-----SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (2114)
Q Consensus 495 ~l~~iQ~-----~~i~~~l-----~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~ 564 (2114)
+|+++|+ ++++.++ ..++++|++||||||||++|++++++.+... +.+++|++||++||.
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~----------~~~~lilaPTr~La~ 284 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK----------RLRTAVLAPTRVVAA 284 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT----------TCCEEEEESSHHHHH
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC----------CCcEEEEccHHHHHH
Confidence 8999999 9998766 3567899999999999999999999887653 247999999999999
Q ss_pred HHHHHHHHhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHH------HHHHhccCCCcccccccEEEEecccccccC
Q 000129 565 EVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW------DIITRKSGDRTYTQLVKLLIIDEIHLLHDN 638 (2114)
Q Consensus 565 q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~------d~l~r~~~~~~~l~~v~liIiDEaH~l~d~ 638 (2114)
|+++.+..+ ++. ..++... .++||+++ ..+++.......++++++|||||+|++.
T Consensus 285 Q~~~~l~~~----~i~--~~~~~l~-----------~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~-- 345 (673)
T 2wv9_A 285 EMAEALRGL----PVR--YLTPAVQ-----------REHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTD-- 345 (673)
T ss_dssp HHHHHTTTS----CCE--ECCC--------------CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCC--
T ss_pred HHHHHHhcC----Cee--eeccccc-----------ccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccC--
Confidence 999887643 332 1111110 13444432 1223222222457889999999999972
Q ss_pred CchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHH
Q 000129 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQL 718 (2114)
Q Consensus 639 rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~ 718 (2114)
.........+.... .....++++||||++.. +..+ .....| +......+.......
T Consensus 346 --~~~~~~~~~l~~~~--~~~~~~vl~~SAT~~~~--i~~~------------~~~~~~--i~~v~~~~~~~~~~~---- 401 (673)
T 2wv9_A 346 --PASIAARGYIATRV--EAGEAAAIFMTATPPGT--SDPF------------PDTNSP--VHDVSSEIPDRAWSS---- 401 (673)
T ss_dssp --HHHHHHHHHHHHHH--HTTSCEEEEECSSCTTC--CCSS------------CCCSSC--EEEEECCCCSSCCSS----
T ss_pred --ccHHHHHHHHHHhc--cccCCcEEEEcCCCChh--hhhh------------cccCCc--eEEEeeecCHHHHHH----
Confidence 11111122222111 12578999999998732 1111 111111 111000011111000
Q ss_pred hhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceE
Q 000129 719 MNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFA 798 (2114)
Q Consensus 719 ~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~ 798 (2114)
+ +..+.+ .++++||||++++.++.++..|...+ ..++
T Consensus 402 ~----l~~l~~--~~~~~lVF~~s~~~~e~la~~L~~~g-------------------------------------~~v~ 438 (673)
T 2wv9_A 402 G----FEWITD--YAGKTVWFVASVKMSNEIAQCLQRAG-------------------------------------KRVI 438 (673)
T ss_dssp C----CHHHHS--CCSCEEEECSSHHHHHHHHHHHHTTT-------------------------------------CCEE
T ss_pred H----HHHHHh--CCCCEEEEECCHHHHHHHHHHHHhCC-------------------------------------CeEE
Confidence 1 111211 37899999999999999999887532 2367
Q ss_pred EecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEeccee------ccCCCC----ccccCCHHHHHHhh
Q 000129 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQI------YNPEKG----AWTELSPLDIMQML 868 (2114)
Q Consensus 799 ~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~------yd~~~g----~~~~~s~~~~~Qr~ 868 (2114)
.+|| ++|..+++.|++|+++|||||+++++|||+| +++||++... ||+..+ .-.+.+..+|+||+
T Consensus 439 ~lHg----~eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~ 513 (673)
T 2wv9_A 439 QLNR----KSYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRR 513 (673)
T ss_dssp EECS----SSHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHH
T ss_pred EeCh----HHHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHh
Confidence 7898 3899999999999999999999999999999 9999985422 232200 01345899999999
Q ss_pred cccCCCCCCCceEEEEEc
Q 000129 869 GRAGRPQYDSYGEGIIIT 886 (2114)
Q Consensus 869 GRAGR~g~d~~G~~iil~ 886 (2114)
|||||.+ +..|.|++++
T Consensus 514 GRaGR~~-g~~G~ai~l~ 530 (673)
T 2wv9_A 514 GRVGRNP-SQIGDEYHYG 530 (673)
T ss_dssp TTSSCCS-SCCCEEEEEC
T ss_pred hccCCCC-CCCCEEEEEE
Confidence 9999973 3679999995
No 96
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.95 E-value=1e-28 Score=326.81 Aligned_cols=299 Identities=14% Similarity=0.083 Sum_probs=201.8
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000129 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~ 1418 (2114)
...++|+|+++++.+.+ +++++++||||||||++|++|+++.+.. .+. ++||++|||+||.|+++.++
T Consensus 169 ~~~~lpiq~~~i~~l~~-g~dvlv~a~TGSGKT~~~~lpil~~l~~--~~~--~vLvl~PtreLa~Qi~~~l~------- 236 (618)
T 2whx_A 169 ERIGEPDYEVDEDIFRK-KRLTIMDLHPGAGKTKRILPSIVREALK--RRL--RTLILAPTRVVAAEMEEALR------- 236 (618)
T ss_dssp CCCCCCCCCCCGGGGST-TCEEEECCCTTSSTTTTHHHHHHHHHHH--TTC--CEEEEESSHHHHHHHHHHTT-------
T ss_pred cccCCCccccCHHHHhc-CCeEEEEcCCCCCHHHHHHHHHHHHHHh--CCC--eEEEEcChHHHHHHHHHHhc-------
Confidence 46788998887666554 6779999999999999999999988876 233 89999999999999998665
Q ss_pred CcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhc
Q 000129 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQV 1498 (2114)
Q Consensus 1419 g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~ 1498 (2114)
+..+. +.+... .........+.++|.+.+...+.. ...+.++++||+||||.+. ..+...+..+.....
T Consensus 237 ~~~v~-~~~~~l-~~~~tp~~~i~~~t~~~l~~~l~~---~~~l~~~~~iViDEah~~~----~~~~~~~~~i~~~l~-- 305 (618)
T 2whx_A 237 GLPIR-YQTPAV-KSDHTGREIVDLMCHATFTTRLLS---STRVPNYNLIVMDEAHFTD----PCSVAARGYISTRVE-- 305 (618)
T ss_dssp TSCEE-ECCTTS-SCCCCSSSCEEEEEHHHHHHHHHH---CSSCCCCSEEEEESTTCCS----HHHHHHHHHHHHHHH--
T ss_pred CCcee-Eecccc-eeccCCCceEEEEChHHHHHHHhc---cccccCCeEEEEECCCCCC----ccHHHHHHHHHHHhc--
Confidence 23444 222210 111112335778888876654433 3568899999999999872 222223333332221
Q ss_pred CCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEE
Q 000129 1499 ENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPAL 1578 (2114)
Q Consensus 1499 ~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~L 1578 (2114)
..+.|+|+||||+++.. ..+... .+..+.+.. .++.... +..+..+. ...+++|
T Consensus 306 ~~~~q~il~SAT~~~~~--~~~~~~------------~~~~~~v~~-~~~~~~~--------~~ll~~l~---~~~~~~L 359 (618)
T 2whx_A 306 MGEAAAIFMTATPPGST--DPFPQS------------NSPIEDIER-EIPERSW--------NTGFDWIT---DYQGKTV 359 (618)
T ss_dssp HTSCEEEEECSSCTTCC--CSSCCC------------SSCEEEEEC-CCCSSCC--------SSSCHHHH---HCCSCEE
T ss_pred ccCccEEEEECCCchhh--hhhhcc------------CCceeeecc-cCCHHHH--------HHHHHHHH---hCCCCEE
Confidence 25789999999997541 111111 111011110 0111110 11112222 2477999
Q ss_pred EEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcC
Q 000129 1579 VFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAG 1658 (2114)
Q Consensus 1579 VFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g 1658 (2114)
|||+|++.|+.++..|.. .+..+..+||. +|..+++.|++|
T Consensus 360 VF~~s~~~a~~l~~~L~~-----------------------------------~g~~v~~lhg~----~R~~~l~~F~~g 400 (618)
T 2whx_A 360 WFVPSIKAGNDIANCLRK-----------------------------------SGKRVIQLSRK----TFDTEYPKTKLT 400 (618)
T ss_dssp EECSSHHHHHHHHHHHHH-----------------------------------TTCCEEEECTT----THHHHTTHHHHS
T ss_pred EEECChhHHHHHHHHHHH-----------------------------------cCCcEEEEChH----HHHHHHHhhcCC
Confidence 999999999999977743 13458889984 788999999999
Q ss_pred CceEEEecCccccccCCCCcEEEEEeeeEe-----cCC----cCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEee
Q 000129 1659 KIKVCVMSSSMCWGVPLTAHLVVVMGTQYY-----DGQ----ENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCH 1726 (2114)
Q Consensus 1659 ~i~VLVaT~~la~Gvdip~~~vVI~gt~~y-----d~~----~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~ 1726 (2114)
+++|||||+++++|+|+|...||..|..+. +.. .+++.|.+..+|+||+|||||.| +..|.|++++.
T Consensus 401 ~~~VLVaTdv~~rGiDi~v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g-~~~G~ai~l~~ 476 (618)
T 2whx_A 401 DWDFVVTTDISEMGANFRAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNP-AQEDDQYVFSG 476 (618)
T ss_dssp CCSEEEECGGGGTTCCCCCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCT-TCCCEEEEECS
T ss_pred CcEEEEECcHHHcCcccCceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCC-CCCCeEEEEcc
Confidence 999999999999999999444444444322 111 36678999999999999999985 45899999986
No 97
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.95 E-value=1.7e-27 Score=310.69 Aligned_cols=325 Identities=14% Similarity=0.102 Sum_probs=208.2
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.|+|+|..+++.++.++ +..++||||||++|.+|++..... +. ++++++||++||.|.++.+. .+...+|+
T Consensus 74 ~p~~VQ~~~i~~ll~G~---Iaem~TGsGKTlaf~LP~l~~~l~---g~--~vlVltPTreLA~Q~~e~~~-~l~~~lgl 144 (853)
T 2fsf_A 74 RHFDVQLLGGMVLNERC---IAEMRTGEGKTLTATLPAYLNALT---GK--GVHVVTVNDYLAQRDAENNR-PLFEFLGL 144 (853)
T ss_dssp CCCHHHHHHHHHHHSSE---EEECCTTSCHHHHHHHHHHHHHTT---SS--CCEEEESSHHHHHHHHHHHH-HHHHHTTC
T ss_pred CCChHHHhhcccccCCe---eeeecCCchHHHHHHHHHHHHHHc---CC--cEEEEcCCHHHHHHHHHHHH-HHHHhcCC
Confidence 89999999999998765 899999999999999999865433 23 78999999999999999888 56666799
Q ss_pred EEEEEcCCcccchhhc-cCCcEEEEChhhH-HHHHhhhc----ccccccceeEEEecccccccCCCC--c------h--H
Q 000129 1421 RVVELTGETAMDLKLL-EKGQIIISTPEKW-DALSRRWK----QRKYVQQVSLFIIDELHLIGGQGG--P------V--L 1484 (2114)
Q Consensus 1421 ~v~~l~G~~~~~~~~l-~~~~IIV~TPe~l-~~l~r~~~----~~~~l~~v~liIiDEaH~l~~~~g--~------~--l 1484 (2114)
+|+.++|+.+...+.+ ..++|+|+||+++ ..+++... ....++++.++|+||||.++.+.| | . -
T Consensus 145 ~v~~i~GG~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~ 224 (853)
T 2fsf_A 145 TVGINLPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDS 224 (853)
T ss_dssp CEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC----
T ss_pred eEEEEeCCCCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccc
Confidence 9999999987654333 3579999999997 45665421 234568899999999998773221 1 0 0
Q ss_pred HHHHHHHHHHHhhcCC--------------------CceEE------------------------EEcccCCCh-hHHH-
Q 000129 1485 EVIVSRMRYIASQVEN--------------------KIRIV------------------------ALSTSLANA-KDLG- 1518 (2114)
Q Consensus 1485 e~i~srl~~i~~~~~~--------------------~~riV------------------------~lSATl~n~-~dla- 1518 (2114)
..+...+..+...++. ..++. ++|||.+.. ..+.
T Consensus 225 ~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~ 304 (853)
T 2fsf_A 225 SEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTA 304 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHH
Confidence 0111112222222211 22322 678875421 1110
Q ss_pred ----HH-h--------------------cC-----------------------CCC------------------------
Q 000129 1519 ----EW-I--------------------GA-----------------------TSH------------------------ 1526 (2114)
Q Consensus 1519 ----~w-l--------------------~~-----------------------~~~------------------------ 1526 (2114)
.. + |. ...
T Consensus 305 al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTG 384 (853)
T 2fsf_A 305 ALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTG 384 (853)
T ss_dssp ----------------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEEC
T ss_pred HHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCC
Confidence 00 0 00 000
Q ss_pred ---------------ceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHH
Q 000129 1527 ---------------GLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTA 1591 (2114)
Q Consensus 1527 ---------------~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la 1591 (2114)
.++ .-|..+|+.-.-+ ............ ..+...+......+.|+||||+|+..++.++
T Consensus 385 Ta~te~~ef~~iY~l~vv-~IPtn~p~~R~d~-~d~v~~~~~~K~----~al~~~i~~~~~~gqpvLVft~sie~se~Ls 458 (853)
T 2fsf_A 385 TADTEAFEFSSIYKLDTV-VVPTNRPMIRKDL-PDLVYMTEAEKI----QAIIEDIKERTAKGQPVLVGTISIEKSELVS 458 (853)
T ss_dssp TTCCCHHHHHHHHCCEEE-ECCCSSCCCCEEC-CCEEESSHHHHH----HHHHHHHHHHHTTTCCEEEEESSHHHHHHHH
T ss_pred CchhHHHHHHHHhCCcEE-EcCCCCCceeecC-CcEEEeCHHHHH----HHHHHHHHHHhcCCCCEEEEECcHHHHHHHH
Confidence 000 0122233221100 000000111111 1112223232246789999999999999998
Q ss_pred HHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCcccc
Q 000129 1592 VDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCW 1671 (2114)
Q Consensus 1592 ~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~ 1671 (2114)
..|.. .+..+..+||++...+|..+.+.|+.| .|+|||++++|
T Consensus 459 ~~L~~-----------------------------------~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgR 501 (853)
T 2fsf_A 459 NELTK-----------------------------------AGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGR 501 (853)
T ss_dssp HHHHH-----------------------------------TTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSS
T ss_pred HHHHH-----------------------------------CCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccC
Confidence 77733 234578899999999999999999988 69999999999
Q ss_pred ccCCCCc-------------------------------------EEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCC
Q 000129 1672 GVPLTAH-------------------------------------LVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPL 1714 (2114)
Q Consensus 1672 Gvdip~~-------------------------------------~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~ 1714 (2114)
|+|++.. .+|| +++.|.|...|.||+||+||.
T Consensus 502 GtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI----------~te~pes~riy~qr~GRTGRq- 570 (853)
T 2fsf_A 502 GTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHII----------GTERHESRRIDNQLRGRSGRQ- 570 (853)
T ss_dssp CSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEE----------ESSCCSSHHHHHHHHTTSSGG-
T ss_pred CcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEE----------EccCCCCHHHHHhhccccccC-
Confidence 9999973 7899 899999999999999999998
Q ss_pred CCCceEEEEEeecCc
Q 000129 1715 LDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1715 ~~~~G~~iil~~~~~ 1729 (2114)
|.+|.++.|++..+
T Consensus 571 -Gd~G~s~~fls~eD 584 (853)
T 2fsf_A 571 -GDAGSSRFYLSMED 584 (853)
T ss_dssp -GCCEEEEEEEETTS
T ss_pred -CCCeeEEEEecccH
Confidence 78999999988765
No 98
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.95 E-value=4.7e-29 Score=331.63 Aligned_cols=296 Identities=15% Similarity=0.126 Sum_probs=193.9
Q ss_pred CCCHHHH-----HHHHHHH-----cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHH
Q 000129 1341 HFNPIQT-----QVFTVLY-----NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDW 1410 (2114)
Q Consensus 1341 ~~~~iQ~-----q~~~~il-----~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~ 1410 (2114)
+|+|+|+ ++++.++ ..+++++++||||||||++|++|+++.+.. .+. +++|++||++||.|+++.+
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~--~~~--~~lilaPTr~La~Q~~~~l 290 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ--KRL--RTAVLAPTRVVAAEMAEAL 290 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH--TTC--CEEEEESSHHHHHHHHHHT
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh--CCC--cEEEEccHHHHHHHHHHHH
Confidence 8999999 9998776 357789999999999999999999988765 233 8999999999999999877
Q ss_pred HHHhcCCCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHH
Q 000129 1411 EIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSR 1490 (2114)
Q Consensus 1411 ~~~f~~~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~sr 1490 (2114)
+ .+ ++ ....+.... ..-...-+-+.+.+. +.+++.....++++++||+||+|++. .........
T Consensus 291 ~-~~----~i--~~~~~~l~~--v~tp~~ll~~l~~~~---l~~~l~~~~~l~~l~lvViDEaH~~~----~~~~~~~~~ 354 (673)
T 2wv9_A 291 R-GL----PV--RYLTPAVQR--EHSGNEIVDVMCHAT---LTHRLMSPLRVPNYNLFVMDEAHFTD----PASIAARGY 354 (673)
T ss_dssp T-TS----CC--EECCC---C--CCCSCCCEEEEEHHH---HHHHHHSSSCCCCCSEEEEESTTCCC----HHHHHHHHH
T ss_pred h-cC----Ce--eeecccccc--cCCHHHHHHHHHhhh---hHHHHhcccccccceEEEEeCCcccC----ccHHHHHHH
Confidence 6 22 22 221111110 000001222333333 23333334568899999999999882 222223333
Q ss_pred HHHHHhhcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHH
Q 000129 1491 MRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQH 1570 (2114)
Q Consensus 1491 l~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 1570 (2114)
+..+.. ....++++||||++.. +..+..... ++......+..... ...+..+.
T Consensus 355 l~~~~~--~~~~~vl~~SAT~~~~-------------i~~~~~~~~--~i~~v~~~~~~~~~--------~~~l~~l~-- 407 (673)
T 2wv9_A 355 IATRVE--AGEAAAIFMTATPPGT-------------SDPFPDTNS--PVHDVSSEIPDRAW--------SSGFEWIT-- 407 (673)
T ss_dssp HHHHHH--TTSCEEEEECSSCTTC-------------CCSSCCCSS--CEEEEECCCCSSCC--------SSCCHHHH--
T ss_pred HHHhcc--ccCCcEEEEcCCCChh-------------hhhhcccCC--ceEEEeeecCHHHH--------HHHHHHHH--
Confidence 333321 2578999999999643 111222111 22211111111111 01111221
Q ss_pred hcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHH
Q 000129 1571 AKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEV 1650 (2114)
Q Consensus 1571 l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~ 1650 (2114)
..++++||||++++.|+.++..|.. .+..+..+|| ++|..
T Consensus 408 -~~~~~~lVF~~s~~~~e~la~~L~~-----------------------------------~g~~v~~lHg----~eR~~ 447 (673)
T 2wv9_A 408 -DYAGKTVWFVASVKMSNEIAQCLQR-----------------------------------AGKRVIQLNR----KSYDT 447 (673)
T ss_dssp -SCCSCEEEECSSHHHHHHHHHHHHT-----------------------------------TTCCEEEECS----SSHHH
T ss_pred -hCCCCEEEEECCHHHHHHHHHHHHh-----------------------------------CCCeEEEeCh----HHHHH
Confidence 3578999999999999999877632 1345889999 48999
Q ss_pred HHHHHhcCCceEEEecCccccccCCCCcEEEE-EeeeE-----ecCC----cCcCCCCCHhHHHHhHcccCCCCCCCceE
Q 000129 1651 VSALFEAGKIKVCVMSSSMCWGVPLTAHLVVV-MGTQY-----YDGQ----ENAHTDYPVTDLLQMMGHASRPLLDNSGK 1720 (2114)
Q Consensus 1651 v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI-~gt~~-----yd~~----~~~~~~~s~~~~lQr~GRAGR~~~~~~G~ 1720 (2114)
+++.|++|+++|||||+++++|||+| +.+|| .|+.+ |+.. ..++.|.+..+|+||+|||||.+ +..|.
T Consensus 448 v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~-g~~G~ 525 (673)
T 2wv9_A 448 EYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNP-SQIGD 525 (673)
T ss_dssp HGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCS-SCCCE
T ss_pred HHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCC-CCCCE
Confidence 99999999999999999999999999 66666 33321 3322 12578999999999999999974 57899
Q ss_pred EEEEe
Q 000129 1721 CVILC 1725 (2114)
Q Consensus 1721 ~iil~ 1725 (2114)
|++++
T Consensus 526 ai~l~ 530 (673)
T 2wv9_A 526 EYHYG 530 (673)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 99996
No 99
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.95 E-value=6.6e-28 Score=319.27 Aligned_cols=291 Identities=15% Similarity=0.202 Sum_probs=206.0
Q ss_pred CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhh
Q 000129 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKL 1435 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~ 1435 (2114)
.+++++++||||||||+.+ ++.+.. .+ +++|++|||+||.|++++|++ + |++++.++|+...-...
T Consensus 154 ~rk~vlv~apTGSGKT~~a----l~~l~~---~~--~gl~l~PtR~LA~Qi~~~l~~-~----g~~v~lltG~~~~iv~T 219 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTYHA----IQKYFS---AK--SGVYCGPLKLLAHEIFEKSNA-A----GVPCDLVTGEERVTVQP 219 (677)
T ss_dssp CCEEEEEECCTTSSHHHHH----HHHHHH---SS--SEEEEESSHHHHHHHHHHHHH-T----TCCEEEECSSCEECCST
T ss_pred CCCEEEEEcCCCCCHHHHH----HHHHHh---cC--CeEEEeCHHHHHHHHHHHHHh-c----CCcEEEEECCeeEEecC
Confidence 3567999999999999844 333333 22 459999999999999999884 2 67899999987652111
Q ss_pred -ccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCC-CCchHHHHHHHHHHHHhhcCCCceEEEEcccCCC
Q 000129 1436 -LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (2114)
Q Consensus 1436 -l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~-~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n 1513 (2114)
-...+++++|++.+. ..+.++++||||+|++++. +|..++.++.++. ....+++++|||.+.
T Consensus 220 pGr~~~il~~T~e~~~----------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~------~~~i~il~~SAT~~~ 283 (677)
T 3rc3_A 220 NGKQASHVSCTVEMCS----------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLC------AEEVHLCGEPAAIDL 283 (677)
T ss_dssp TCCCCSEEEEEGGGCC----------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCC------EEEEEEEECGGGHHH
T ss_pred CCcccceeEecHhHhh----------hcccCCEEEEecceecCCccchHHHHHHHHccC------ccceEEEeccchHHH
Confidence 123589999987643 3567899999999999764 6666665554332 257899999999766
Q ss_pred hhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHH
Q 000129 1514 AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVD 1593 (2114)
Q Consensus 1514 ~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~ 1593 (2114)
...++.+.+.. +.+....|+.++........ . + . ...+..+|||+|++.|..++..
T Consensus 284 i~~l~~~~~~~----~~v~~~~r~~~l~~~~~~l~--~---------------l-~--~~~~g~iIf~~s~~~ie~la~~ 339 (677)
T 3rc3_A 284 VMELMYTTGEE----VEVRDYKRLTPISVLDHALE--S---------------L-D--NLRPGDCIVCFSKNDIYSVSRQ 339 (677)
T ss_dssp HHHHHHHHTCC----EEEEECCCSSCEEECSSCCC--S---------------G-G--GCCTTEEEECSSHHHHHHHHHH
T ss_pred HHHHHHhcCCc----eEEEEeeecchHHHHHHHHH--H---------------H-H--hcCCCCEEEEcCHHHHHHHHHH
Confidence 66666666443 22222345555443211110 0 0 0 1134568999999999988876
Q ss_pred HHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhc--CCceEEEecCcccc
Q 000129 1594 LMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA--GKIKVCVMSSSMCW 1671 (2114)
Q Consensus 1594 L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~--g~i~VLVaT~~la~ 1671 (2114)
|.. .+.+|+++||+|++++|..+++.|++ |.++|||||+++++
T Consensus 340 L~~-----------------------------------~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~ 384 (677)
T 3rc3_A 340 IEI-----------------------------------RGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGM 384 (677)
T ss_dssp HHH-----------------------------------TTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGS
T ss_pred HHh-----------------------------------cCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHC
Confidence 632 24579999999999999999999999 99999999999999
Q ss_pred ccCCCCcEEEEEeeeEec----CCcCcCCCCCHhHHHHhHcccCCCCCC-CceEEEEEeecCcHHHHHHHH
Q 000129 1672 GVPLTAHLVVVMGTQYYD----GQENAHTDYPVTDLLQMMGHASRPLLD-NSGKCVILCHAPRKEYYKKFL 1737 (2114)
Q Consensus 1672 Gvdip~~~vVI~gt~~yd----~~~~~~~~~s~~~~lQr~GRAGR~~~~-~~G~~iil~~~~~~~~~~~~l 1737 (2114)
|||++...||+.|..+|+ |+. ...|.+..+|+||+|||||.|.+ ..|.|++++.. +...+++++
T Consensus 385 GlDi~v~~VI~~~~~k~~~~~~G~~-~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~-d~~~~~~~~ 453 (677)
T 3rc3_A 385 GLNLSIRRIIFYSLIKPSINEKGER-ELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE-DLSLLKEIL 453 (677)
T ss_dssp SCCCCBSEEEESCSBC------------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT-HHHHHHHHH
T ss_pred CcCcCccEEEECCccccccccCCcc-ccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc-hHHHHHHHH
Confidence 999966666667776542 221 24589999999999999999754 46888887755 344555555
No 100
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.95 E-value=8.4e-29 Score=319.17 Aligned_cols=289 Identities=15% Similarity=0.120 Sum_probs=188.9
Q ss_pred HHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcc
Q 000129 1351 TVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETA 1430 (2114)
Q Consensus 1351 ~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~ 1430 (2114)
+.++.++++++++||||||||++|++|+++.+.. .+. ++||++||++||.|+++.++ |..+....+...
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~--~~~--~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~~~ 83 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ--QRL--RTAVLAPTRVVAAEMAEALR-------GLPVRYQTSAVQ 83 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH--TTC--CEEEEECSHHHHHHHHHHTT-------TSCEEECC----
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh--CCC--cEEEECchHHHHHHHHHHhc-------CceEeEEecccc
Confidence 4566778899999999999999999999988765 233 89999999999999998775 334443333221
Q ss_pred cchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEccc
Q 000129 1431 MDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTS 1510 (2114)
Q Consensus 1431 ~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSAT 1510 (2114)
.. ......+.++|.+.+...+ .....++++++|||||||.+.... ......+..+. ...+.|+|+||||
T Consensus 84 ~~--~t~~~~i~~~~~~~l~~~l---~~~~~l~~~~~iViDEaH~~~~~~----~~~~~~~~~~~--~~~~~~~il~SAT 152 (459)
T 2z83_A 84 RE--HQGNEIVDVMCHATLTHRL---MSPNRVPNYNLFVMDEAHFTDPAS----IAARGYIATKV--ELGEAAAIFMTAT 152 (459)
T ss_dssp ------CCCSEEEEEHHHHHHHH---HSCC-CCCCSEEEESSTTCCSHHH----HHHHHHHHHHH--HTTSCEEEEECSS
T ss_pred cC--CCCCcEEEEEchHHHHHHh---hccccccCCcEEEEECCccCCchh----hHHHHHHHHHh--ccCCccEEEEEcC
Confidence 11 1122357788888754433 334568899999999999752111 11111222221 1357999999999
Q ss_pred CCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHH
Q 000129 1511 LANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLT 1590 (2114)
Q Consensus 1511 l~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~l 1590 (2114)
++... ..+..... |+.......+...+. ..+..+. ...+++||||+|++.|+.+
T Consensus 153 ~~~~~-------------~~~~~~~~--pi~~~~~~~~~~~~~--------~~~~~l~---~~~~~~LVF~~s~~~~~~l 206 (459)
T 2z83_A 153 PPGTT-------------DPFPDSNA--PIHDLQDEIPDRAWS--------SGYEWIT---EYAGKTVWFVASVKMGNEI 206 (459)
T ss_dssp CTTCC-------------CSSCCCSS--CEEEEECCCCSSCCS--------SCCHHHH---HCCSCEEEECSCHHHHHHH
T ss_pred CCcch-------------hhhccCCC--CeEEecccCCcchhH--------HHHHHHH---hcCCCEEEEeCChHHHHHH
Confidence 97431 11111111 222211111111110 0111122 2368999999999999999
Q ss_pred HHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccc
Q 000129 1591 AVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMC 1670 (2114)
Q Consensus 1591 a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la 1670 (2114)
+..|.. .+..+..+|+. +|..+++.|++|+++|||||++++
T Consensus 207 ~~~L~~-----------------------------------~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~ 247 (459)
T 2z83_A 207 AMCLQR-----------------------------------AGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISE 247 (459)
T ss_dssp HHHHHH-----------------------------------TTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC-
T ss_pred HHHHHh-----------------------------------cCCcEEecCHH----HHHHHHhhccCCCceEEEECChHH
Confidence 877632 13457888984 788999999999999999999999
Q ss_pred cccCCCCcEEEE-Eeee-----EecCCcC----cCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecC
Q 000129 1671 WGVPLTAHLVVV-MGTQ-----YYDGQEN----AHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP 1728 (2114)
Q Consensus 1671 ~Gvdip~~~vVI-~gt~-----~yd~~~~----~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~ 1728 (2114)
+|+|+|+ .+|| .|+. .|++..+ ++.|.+..+|+||+|||||.| ...|.|++++...
T Consensus 248 ~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g-~~~G~~~~~~~~~ 313 (459)
T 2z83_A 248 MGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNP-NQVGDEYHYGGAT 313 (459)
T ss_dssp --CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCT-TCCCEEEEECSCC
T ss_pred hCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCC-CCCCeEEEEEccc
Confidence 9999999 6666 3322 1333322 568999999999999999984 2389999998775
No 101
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.95 E-value=1.3e-27 Score=319.54 Aligned_cols=327 Identities=16% Similarity=0.144 Sum_probs=189.6
Q ss_pred CCCCHHHHHHHHHHHc----CCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHH-H
Q 000129 494 TQLNRVQSRVYKSALS----SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV-G 568 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~~l~----~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~-~ 568 (2114)
..|+++|.++++.++. +.+++++++|||||||++++..+.+.+..+.... ......++|||+|+++|+.|+. +
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~--~~~~~~~vlil~P~~~L~~Q~~~~ 254 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRT--GDYRKPRILFLADRNVLVDDPKDK 254 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSS--CSSSCCCEEEEEC-----------
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccc--cccCCCeEEEEeCCHHHHHHHHHH
Confidence 4799999999998876 5677999999999999997666555544321000 0113458999999999999998 6
Q ss_pred HHHHhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhcc--CCCcccccccEEEEecccccccCCchhHHHH
Q 000129 569 NLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS--GDRTYTQLVKLLIIDEIHLLHDNRGPVLESI 646 (2114)
Q Consensus 569 ~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~--~~~~~l~~v~liIiDEaH~l~d~rg~~le~i 646 (2114)
.|.. ++..+..+.++. .....+|+|+||+++....+.. ........+++|||||||++....+..+..+
T Consensus 255 ~~~~----~~~~~~~~~~~~-----~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~~~i 325 (590)
T 3h1t_A 255 TFTP----FGDARHKIEGGK-----VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNWREI 325 (590)
T ss_dssp CCTT----TCSSEEECCC-------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------CHHH
T ss_pred HHHh----cchhhhhhhccC-----CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchHHHHHH
Confidence 5554 344455555432 2246799999999874332211 1112345689999999999875433444444
Q ss_pred HHHHHHHHhhccccccEEEEccccCCh--HHHHHHHhccccCceEeec-------CCcccccceeEEEeec---------
Q 000129 647 VARTVRQIETTKEHIRLVGLSATLPNY--EDVALFLRVNLEKGLFYFD-------NSYRPVPLSQQYIGIQ--------- 708 (2114)
Q Consensus 647 v~rl~~~~~~~~~~~riv~lSATlpn~--~dva~~l~~~~~~~~~~f~-------~~~rpv~l~~~~~~~~--------- 708 (2114)
+..+ +..++++||||..+. .+...+++. .++.+. ....| .....+...
T Consensus 326 l~~~--------~~~~~l~lTATP~~~~~~~~~~~f~~----~~~~~~~~~~i~~~~l~~--~~~~~~~~~~~~~~~~~~ 391 (590)
T 3h1t_A 326 LEYF--------EPAFQIGMTATPLREDNRDTYRYFGN----PIYTYSLRQGIDDGFLAP--YRVHRVISEVDAAGWRPS 391 (590)
T ss_dssp HHHS--------TTSEEEEEESSCSCTTTHHHHHHSCS----CSEEECHHHHHHHTSSCC--EEEEEEEETTCC------
T ss_pred HHhC--------CcceEEEeccccccccchhHHHHcCC----ceEecCHHHHhhCCccCC--cEEEEeeeeeeccccccc
Confidence 4332 346799999996542 233444432 111110 00011 111101000
Q ss_pred -----------------cCchh------HHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhccccccc
Q 000129 709 -----------------VKKPL------QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGR 765 (2114)
Q Consensus 709 -----------------~~~~~------~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~ 765 (2114)
..... .+...+.+.+.+.+......+++||||++++.|..++..|...+.....
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~--- 468 (590)
T 3h1t_A 392 KGDVDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSR--- 468 (590)
T ss_dssp -----------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHT---
T ss_pred cccccccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhc---
Confidence 00000 0111112222222223333579999999999999999999876532110
Q ss_pred ccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCce---EEEechHhhhhcCCCceEEE
Q 000129 766 FLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQ---VLVSTATLAWGVNLPAHTVI 842 (2114)
Q Consensus 766 ~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~---VLVaT~tla~GVdlP~v~vV 842 (2114)
..+..+..+||.++. +|..+++.|++|..+ |||||+++++|||+|++++|
T Consensus 469 --------------------------~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~V 521 (590)
T 3h1t_A 469 --------------------------KHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNV 521 (590)
T ss_dssp --------------------------TCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEE
T ss_pred --------------------------cCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEE
Confidence 011236677888764 799999999998876 89999999999999999999
Q ss_pred EecceeccCCCCccccCCHHHHHHhhcccCCCCCC-CceEEEEE
Q 000129 843 IKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD-SYGEGIII 885 (2114)
Q Consensus 843 I~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d-~~G~~iil 885 (2114)
|. ++++. |...|+||+|||||.+.+ ....++|+
T Consensus 522 i~----~~~~~------s~~~~~Q~iGR~~R~~~~~~k~~~~I~ 555 (590)
T 3h1t_A 522 VL----ARVVN------SMSEFKQIVGRGTRLREDYGKLWFNII 555 (590)
T ss_dssp EE----ESCCC------CHHHHHHHHTTSCCCBGGGTBSCEEEE
T ss_pred EE----EecCC------ChHHHHHHHhhhcccCccCCCCEEEEE
Confidence 98 66665 788999999999998753 23344444
No 102
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.95 E-value=6.5e-28 Score=308.34 Aligned_cols=281 Identities=17% Similarity=0.213 Sum_probs=177.5
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCcc
Q 000129 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~ 590 (2114)
++++|++||||||||++|++++++.+... +.+++|++||++||.|+++.+. |+.+..++|....
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~----------g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~ 65 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKK----------RLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS 65 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHT----------TCCEEEEESSHHHHHHHHHHTT------TSCEEEC------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhC----------CCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc
Confidence 46799999999999999999999666542 2479999999999999988774 4566666665321
Q ss_pred ChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEcccc
Q 000129 591 TRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670 (2114)
Q Consensus 591 ~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATl 670 (2114)
.......+.+.|.+.+...... ...++++++|||||+|++ ++........+.... .....++++||||+
T Consensus 66 --~~~~~~~~~~~~~~~l~~~l~~---~~~~~~l~~vViDEaH~~----~~~~~~~~~~l~~~~--~~~~~~~l~~SAT~ 134 (431)
T 2v6i_A 66 --ERTGNEIVDFMCHSTFTMKLLQ---GVRVPNYNLYIMDEAHFL----DPASVAARGYIETRV--SMGDAGAIFMTATP 134 (431)
T ss_dssp -----CCCSEEEEEHHHHHHHHHH---TCCCCCCSEEEEESTTCC----SHHHHHHHHHHHHHH--HTTSCEEEEEESSC
T ss_pred --cCCCCceEEEEchHHHHHHHhc---CccccCCCEEEEeCCccC----CccHHHHHHHHHHHh--hCCCCcEEEEeCCC
Confidence 1122455667788865221111 235778999999999986 322222233332221 24579999999998
Q ss_pred CChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHH
Q 000129 671 PNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTA 750 (2114)
Q Consensus 671 pn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a 750 (2114)
++. +.. +.....|+ ......+.... ...+ +..+.+ .++++||||++++.++.++
T Consensus 135 ~~~--~~~------------~~~~~~~i--~~~~~~~~~~~----~~~~----~~~l~~--~~~~~lVF~~~~~~~~~l~ 188 (431)
T 2v6i_A 135 PGT--TEA------------FPPSNSPI--IDEETRIPDKA----WNSG----YEWITE--FDGRTVWFVHSIKQGAEIG 188 (431)
T ss_dssp TTC--CCS------------SCCCSSCC--EEEECCCCSSC----CSSC----CHHHHS--CSSCEEEECSSHHHHHHHH
T ss_pred Ccc--hhh------------hcCCCCce--eeccccCCHHH----HHHH----HHHHHc--CCCCEEEEeCCHHHHHHHH
Confidence 741 111 11111111 10000011111 0111 111211 2579999999999999999
Q ss_pred HHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHh
Q 000129 751 RAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATL 830 (2114)
Q Consensus 751 ~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tl 830 (2114)
..|...+ ..++.+||+ +|..+++.|++|+++|||||+++
T Consensus 189 ~~L~~~~-------------------------------------~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~ 227 (431)
T 2v6i_A 189 TCLQKAG-------------------------------------KKVLYLNRK----TFESEYPKCKSEKWDFVITTDIS 227 (431)
T ss_dssp HHHHHTT-------------------------------------CCEEEESTT----THHHHTTHHHHSCCSEEEECGGG
T ss_pred HHHHHcC-------------------------------------CeEEEeCCc----cHHHHHHhhcCCCCeEEEECchH
Confidence 9887642 237788987 68889999999999999999999
Q ss_pred hhhcCCCceEEEEecceeccC---CC----CccccCCHHHHHHhhcccCCCCCCCceEEEEEcC
Q 000129 831 AWGVNLPAHTVIIKGTQIYNP---EK----GAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITG 887 (2114)
Q Consensus 831 a~GVdlP~v~vVI~~~~~yd~---~~----g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~ 887 (2114)
++|||+| +..||+....+.| .. ....+.+..+|+||+|||||.|. ..|.++++..
T Consensus 228 e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~-~~~~~~~~~~ 289 (431)
T 2v6i_A 228 EMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPE-KLGDIYAYSG 289 (431)
T ss_dssp GTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTT-CCCCEEEECS
T ss_pred HcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCC-CCCeEEEEcC
Confidence 9999999 5554432111100 00 00123488999999999999863 3466666653
No 103
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.95 E-value=6.6e-27 Score=304.74 Aligned_cols=334 Identities=15% Similarity=0.123 Sum_probs=228.3
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
|+ .|+++|..+++.++.++ |..++||+|||++|.+|++..... +. .+++|+||++||.|.++.+. .+...
T Consensus 109 G~-rP~~VQ~~~ip~Ll~G~---Iaem~TGeGKTLa~~LP~~l~aL~---g~--~v~VvTpTreLA~Qdae~m~-~l~~~ 178 (922)
T 1nkt_A 109 DQ-RPFDVQVMGAAALHLGN---VAEMKTGEGKTLTCVLPAYLNALA---GN--GVHIVTVNDYLAKRDSEWMG-RVHRF 178 (922)
T ss_dssp SC-CCCHHHHHHHHHHHTTE---EEECCTTSCHHHHTHHHHHHHHTT---TS--CEEEEESSHHHHHHHHHHHH-HHHHH
T ss_pred CC-CCCHHHHHHHHhHhcCC---EEEecCCCccHHHHHHHHHHHHHh---CC--CeEEEeCCHHHHHHHHHHHH-HHHhh
Confidence 57 99999999999998755 999999999999999999754333 23 79999999999999998887 56666
Q ss_pred CCcEEEEEcCCcccchhh-ccCCcEEEEChhhH-HHHHhhhc----ccccccceeEEEecccccccC-C-CCc-------
Q 000129 1418 LGMRVVELTGETAMDLKL-LEKGQIIISTPEKW-DALSRRWK----QRKYVQQVSLFIIDELHLIGG-Q-GGP------- 1482 (2114)
Q Consensus 1418 ~g~~v~~l~G~~~~~~~~-l~~~~IIV~TPe~l-~~l~r~~~----~~~~l~~v~liIiDEaH~l~~-~-~g~------- 1482 (2114)
+|++|+.++|+.+...+. ...++|+|+||+++ ..+++... ....++.+.++||||||.++. + +.|
T Consensus 179 lGLsv~~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~ 258 (922)
T 1nkt_A 179 LGLQVGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPA 258 (922)
T ss_dssp TTCCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEEC
T ss_pred cCCeEEEEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCC
Confidence 799999999988765333 23579999999997 45555421 234577899999999997763 2 111
Q ss_pred -hHHHHHHHHHHHHhhcC---------CCceEE-----------------EEcccCCCh-hHHHH-----H-hcCCCCce
Q 000129 1483 -VLEVIVSRMRYIASQVE---------NKIRIV-----------------ALSTSLANA-KDLGE-----W-IGATSHGL 1528 (2114)
Q Consensus 1483 -~le~i~srl~~i~~~~~---------~~~riV-----------------~lSATl~n~-~dla~-----w-l~~~~~~~ 1528 (2114)
.-..+...+..+...++ +..++. ++|||.+.. ..+.. . +......+
T Consensus 259 ~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYi 338 (922)
T 1nkt_A 259 DGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYI 338 (922)
T ss_dssp CCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEE
T ss_pred CcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhccccee
Confidence 01234455556666665 567777 889997652 22221 1 11111111
Q ss_pred ee---------cC----CCCC-------------ccCc---EEEEecccccchH-----------------HHH------
Q 000129 1529 FN---------FP----PGVR-------------PVPL---EIHIQGVDITNFE-----------------ARM------ 1556 (2114)
Q Consensus 1529 ~~---------f~----~~~r-------------pv~l---~~~~~~~~~~~~~-----------------~~~------ 1556 (2114)
+. |. +..| .+.+ ..........++. ..+
T Consensus 339 V~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l 418 (922)
T 1nkt_A 339 VRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKL 418 (922)
T ss_dssp ECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCC
T ss_pred eecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCC
Confidence 00 00 0000 0000 0011000000000 000
Q ss_pred -------------------HhcC-HHHHHH----HHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCC
Q 000129 1557 -------------------QAMT-KPTFTA----IVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWP 1612 (2114)
Q Consensus 1557 -------------------~~~~-~~~~~~----i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~ 1612 (2114)
.... ...+.. +......+.|+||||+|+..++.++..|..
T Consensus 419 ~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~---------------- 482 (922)
T 1nkt_A 419 GVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTK---------------- 482 (922)
T ss_dssp EEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHH----------------
T ss_pred CeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHH----------------
Confidence 0000 112222 222224678999999999999999877733
Q ss_pred cccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCc--------------
Q 000129 1613 AEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAH-------------- 1678 (2114)
Q Consensus 1613 ~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~-------------- 1678 (2114)
.+..+..+||++...++..+.+.|+.| .|+|||++++||+|++..
T Consensus 483 -------------------~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~ 541 (922)
T 1nkt_A 483 -------------------RRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRER 541 (922)
T ss_dssp -------------------TTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHT
T ss_pred -------------------CCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhc
Confidence 234578899999988998999988888 699999999999999964
Q ss_pred --------------------------------------EEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceE
Q 000129 1679 --------------------------------------LVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGK 1720 (2114)
Q Consensus 1679 --------------------------------------~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~ 1720 (2114)
.+|| +++.|.|...|.||+||+||. |.+|.
T Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI----------~te~pes~riy~qr~GRTGRq--GdpG~ 609 (922)
T 1nkt_A 542 GLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVL----------GTERHESRRIDNQLRGRSGRQ--GDPGE 609 (922)
T ss_dssp TCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEE----------ECSCCSSHHHHHHHHHTSSGG--GCCEE
T ss_pred cccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEE----------eccCCCCHHHHHHHhcccccC--CCCee
Confidence 6899 899999999999999999998 78999
Q ss_pred EEEEeecCcH
Q 000129 1721 CVILCHAPRK 1730 (2114)
Q Consensus 1721 ~iil~~~~~~ 1730 (2114)
++.|++..+.
T Consensus 610 s~fflSleD~ 619 (922)
T 1nkt_A 610 SRFYLSLGDE 619 (922)
T ss_dssp EEEEEETTSH
T ss_pred EEEEechhHH
Confidence 9999987653
No 104
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.95 E-value=4e-27 Score=301.04 Aligned_cols=281 Identities=16% Similarity=0.134 Sum_probs=187.8
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhhc
Q 000129 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLL 1436 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~l 1436 (2114)
+++++++||||||||++|++|+++.+.. .+. +++|++||++||.|+++.+. |..+..++|.... ..-
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~--~g~--~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~~~~--~~~ 68 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVK--KRL--RTVILAPTRVVASEMYEALR-------GEPIRYMTPAVQS--ERT 68 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHH--TTC--CEEEEESSHHHHHHHHHHTT-------TSCEEEC-----------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHh--CCC--CEEEECcHHHHHHHHHHHhC-------CCeEEEEecCccc--cCC
Confidence 5679999999999999999999976655 233 89999999999999887654 4566666664321 111
Q ss_pred cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCChhH
Q 000129 1437 EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKD 1516 (2114)
Q Consensus 1437 ~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~d 1516 (2114)
....+.++|.+.+...+. ....+.++++||+||+|+++ +........++.+. .+.+.++++||||+++.
T Consensus 69 ~~~~~~~~~~~~l~~~l~---~~~~~~~l~~vViDEaH~~~----~~~~~~~~~l~~~~--~~~~~~~l~~SAT~~~~-- 137 (431)
T 2v6i_A 69 GNEIVDFMCHSTFTMKLL---QGVRVPNYNLYIMDEAHFLD----PASVAARGYIETRV--SMGDAGAIFMTATPPGT-- 137 (431)
T ss_dssp CCCSEEEEEHHHHHHHHH---HTCCCCCCSEEEEESTTCCS----HHHHHHHHHHHHHH--HTTSCEEEEEESSCTTC--
T ss_pred CCceEEEEchHHHHHHHh---cCccccCCCEEEEeCCccCC----ccHHHHHHHHHHHh--hCCCCcEEEEeCCCCcc--
Confidence 233567788887654333 24458899999999999862 33333444444443 24579999999999752
Q ss_pred HHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHH
Q 000129 1517 LGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMT 1596 (2114)
Q Consensus 1517 la~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~ 1596 (2114)
+..+.....| +......+..... ...+..+. ..++++||||++++.|+.++..|..
T Consensus 138 -----------~~~~~~~~~~--i~~~~~~~~~~~~--------~~~~~~l~---~~~~~~lVF~~~~~~~~~l~~~L~~ 193 (431)
T 2v6i_A 138 -----------TEAFPPSNSP--IIDEETRIPDKAW--------NSGYEWIT---EFDGRTVWFVHSIKQGAEIGTCLQK 193 (431)
T ss_dssp -----------CCSSCCCSSC--CEEEECCCCSSCC--------SSCCHHHH---SCSSCEEEECSSHHHHHHHHHHHHH
T ss_pred -----------hhhhcCCCCc--eeeccccCCHHHH--------HHHHHHHH---cCCCCEEEEeCCHHHHHHHHHHHHH
Confidence 1112222122 1111111111111 11112221 2367899999999999999876632
Q ss_pred hhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCC
Q 000129 1597 YSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLT 1676 (2114)
Q Consensus 1597 ~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip 1676 (2114)
. +..++.+||+ +|..+++.|++|+++|||||+++++|+|+|
T Consensus 194 ~-----------------------------------~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip 234 (431)
T 2v6i_A 194 A-----------------------------------GKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK 234 (431)
T ss_dssp T-----------------------------------TCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC
T ss_pred c-----------------------------------CCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC
Confidence 1 3468999997 688999999999999999999999999999
Q ss_pred CcEEEEEeeeEe---c---CCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEe
Q 000129 1677 AHLVVVMGTQYY---D---GQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILC 1725 (2114)
Q Consensus 1677 ~~~vVI~gt~~y---d---~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~ 1725 (2114)
...||..|+.++ + -..+++.|.+..+|+||+|||||.| ...|.++++.
T Consensus 235 ~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g-~~~~~~~~~~ 288 (431)
T 2v6i_A 235 ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNP-EKLGDIYAYS 288 (431)
T ss_dssp CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCT-TCCCCEEEEC
T ss_pred CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCC-CCCCeEEEEc
Confidence 666554444332 1 1125678899999999999999975 3455666665
No 105
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.95 E-value=3.5e-27 Score=315.32 Aligned_cols=329 Identities=16% Similarity=0.133 Sum_probs=190.8
Q ss_pred CCCCHHHHHHHHHHHc----CCCcEEEEecCCCchHHHHHHHHHHHhhhcc----CCCceEEEEEcccHHHHHHHH-HHH
Q 000129 1340 KHFNPIQTQVFTVLYN----TDDNVLVAAPTGSGKTICSEFAILRNHQKAS----ETGVMRAVYIAPLEALAKERY-RDW 1410 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il~----~~~nvli~ApTGSGKTl~~~l~il~~l~~~~----~~~~~k~l~I~Ptr~La~q~~-~~~ 1410 (2114)
..++|+|.++++.+++ +++++++++|||||||+++..++.+.+.... .....++|||+|+++|+.|++ +.+
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 3799999999999876 6678999999999999998666555554310 002339999999999999998 655
Q ss_pred HHHhcCCCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhh--hcccccccceeEEEecccccccCCCCchHHHHH
Q 000129 1411 EIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRR--WKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 1488 (2114)
Q Consensus 1411 ~~~f~~~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~--~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~ 1488 (2114)
+ .|+ ..+..+.++. ....++|+|+||+++....+. +........+++||+||||++....+..+..++
T Consensus 257 ~-~~~----~~~~~~~~~~-----~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~~~il 326 (590)
T 3h1t_A 257 T-PFG----DARHKIEGGK-----VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNWREIL 326 (590)
T ss_dssp T-TTC----SSEEECCC-------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------CHHHH
T ss_pred H-hcc----hhhhhhhccC-----CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchHHHHHHH
Confidence 5 443 3344444432 124569999999998766532 112223567899999999998754333333333
Q ss_pred HHHHHHHhhcCCCceEEEEcccCCCh--hHHHHHhcCCCCceeecCC---CCCccCcEEEEecc----------------
Q 000129 1489 SRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPP---GVRPVPLEIHIQGV---------------- 1547 (2114)
Q Consensus 1489 srl~~i~~~~~~~~riV~lSATl~n~--~dla~wl~~~~~~~~~f~~---~~rpv~l~~~~~~~---------------- 1547 (2114)
. .++ ..++++||||+.+. .+...++|.... .+.+.. .....|........
T Consensus 327 ~-------~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~-~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (590)
T 3h1t_A 327 E-------YFE-PAFQIGMTATPLREDNRDTYRYFGNPIY-TYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDR 397 (590)
T ss_dssp H-------HST-TSEEEEEESSCSCTTTHHHHHHSCSCSE-EECHHHHHHHTSSCCEEEEEEEETTCC------------
T ss_pred H-------hCC-cceEEEeccccccccchhHHHHcCCceE-ecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccc
Confidence 2 222 47899999998764 356667764321 110000 00001111111000
Q ss_pred ----------cccchHHHH--HhcCHHHHHHHH---HHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCC
Q 000129 1548 ----------DITNFEARM--QAMTKPTFTAIV---QHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWP 1612 (2114)
Q Consensus 1548 ----------~~~~~~~~~--~~~~~~~~~~i~---~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~ 1612 (2114)
....+.... ..........+. ......+++||||++++.|..++..|......
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~------------ 465 (590)
T 3h1t_A 398 FGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSD------------ 465 (590)
T ss_dssp -----------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHH------------
T ss_pred cccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhh------------
Confidence 000110000 000111112222 22245678999999999999999888543210
Q ss_pred cccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCce---EEEecCccccccCCCCcEEEEEeeeEec
Q 000129 1613 AEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIK---VCVMSSSMCWGVPLTAHLVVVMGTQYYD 1689 (2114)
Q Consensus 1613 ~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~---VLVaT~~la~Gvdip~~~vVI~gt~~yd 1689 (2114)
........+..+||.++. +|..+++.|++|+.+ |||||+++++|+|+|++.+||
T Consensus 466 ---------------~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi------- 522 (590)
T 3h1t_A 466 ---------------LSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVV------- 522 (590)
T ss_dssp ---------------HHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEE-------
T ss_pred ---------------hhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEE-------
Confidence 000012237788998764 799999999998876 899999999999999999999
Q ss_pred CCcCcCCCCCHhHHHHhHcccCCCCCC-CceEEEEEe
Q 000129 1690 GQENAHTDYPVTDLLQMMGHASRPLLD-NSGKCVILC 1725 (2114)
Q Consensus 1690 ~~~~~~~~~s~~~~lQr~GRAGR~~~~-~~G~~iil~ 1725 (2114)
++..+.+...|+||+|||||.+.+ ....++++-
T Consensus 523 ---~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D 556 (590)
T 3h1t_A 523 ---LARVVNSMSEFKQIVGRGTRLREDYGKLWFNIID 556 (590)
T ss_dssp ---EESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEE
T ss_pred ---EEecCCChHHHHHHHhhhcccCccCCCCEEEEEe
Confidence 677889999999999999997532 333444443
No 106
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.95 E-value=5.5e-28 Score=315.49 Aligned_cols=284 Identities=15% Similarity=0.088 Sum_probs=188.1
Q ss_pred HHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEE
Q 000129 1346 QTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVEL 1425 (2114)
Q Consensus 1346 Q~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l 1425 (2114)
|++.+..++.++++++++||||||||.+|.+++++ .+. +++|++|||+||.|+++++.+.++ ..+...
T Consensus 221 ~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~------~g~--~vLVl~PTReLA~Qia~~l~~~~g----~~vg~~ 288 (666)
T 3o8b_A 221 DNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA------QGY--KVLVLNPSVAATLGFGAYMSKAHG----IDPNIR 288 (666)
T ss_dssp CCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH------TTC--CEEEEESCHHHHHHHHHHHHHHHS----CCCEEE
T ss_pred HHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH------CCC--eEEEEcchHHHHHHHHHHHHHHhC----CCeeEE
Confidence 34444455556788999999999999999998874 133 899999999999999998886664 456667
Q ss_pred cCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEE
Q 000129 1426 TGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIV 1505 (2114)
Q Consensus 1426 ~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV 1505 (2114)
+|+... ....+|+|+||+++ +++ ....++++++||+||||++.. .+...+.++...... .....++
T Consensus 289 vG~~~~----~~~~~IlV~TPGrL---l~~--~~l~l~~l~~lVlDEAH~l~~----~~~~~l~~Il~~l~~-~~~~lli 354 (666)
T 3o8b_A 289 TGVRTI----TTGAPVTYSTYGKF---LAD--GGCSGGAYDIIICDECHSTDS----TTILGIGTVLDQAET-AGARLVV 354 (666)
T ss_dssp CSSCEE----CCCCSEEEEEHHHH---HHT--TSCCTTSCSEEEETTTTCCSH----HHHHHHHHHHHHTTT-TTCSEEE
T ss_pred ECcEec----cCCCCEEEECcHHH---HhC--CCcccCcccEEEEccchhcCc----cHHHHHHHHHHhhhh-cCCceEE
Confidence 776542 24579999999996 232 234577899999999998742 222233333333221 1223478
Q ss_pred EEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChH
Q 000129 1506 ALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRK 1585 (2114)
Q Consensus 1506 ~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~ 1585 (2114)
++|||+++. +......+. .+.........+.. .... ... ...+++||||+|++
T Consensus 355 l~SAT~~~~------i~~~~p~i~-----------~v~~~~~~~i~~~~--~~~~-------l~~-~~~~~vLVFv~Tr~ 407 (666)
T 3o8b_A 355 LATATPPGS------VTVPHPNIE-----------EVALSNTGEIPFYG--KAIP-------IEA-IRGGRHLIFCHSKK 407 (666)
T ss_dssp EEESSCTTC------CCCCCTTEE-----------EEECBSCSSEEETT--EEEC-------GGG-SSSSEEEEECSCHH
T ss_pred EECCCCCcc------cccCCcceE-----------EEeecccchhHHHH--hhhh-------hhh-ccCCcEEEEeCCHH
Confidence 889999763 111110110 00000000000000 0000 011 35789999999999
Q ss_pred HHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEe
Q 000129 1586 YVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVM 1665 (2114)
Q Consensus 1586 ~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVa 1665 (2114)
.|+.++..|.. .+..+..+||+|++++ |.++..+||||
T Consensus 408 ~ae~la~~L~~-----------------------------------~g~~v~~lHG~l~q~e-------r~~~~~~VLVA 445 (666)
T 3o8b_A 408 KCDELAAKLSG-----------------------------------LGINAVAYYRGLDVSV-------IPTIGDVVVVA 445 (666)
T ss_dssp HHHHHHHHHHT-----------------------------------TTCCEEEECTTSCGGG-------SCSSSCEEEEE
T ss_pred HHHHHHHHHHh-----------------------------------CCCcEEEecCCCCHHH-------HHhCCCcEEEE
Confidence 99999977732 1346899999999886 45667799999
Q ss_pred cCccccccCCCCcEEEE-EeeeE-----e--cCCcC---cCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCc
Q 000129 1666 SSSMCWGVPLTAHLVVV-MGTQY-----Y--DGQEN---AHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1666 T~~la~Gvdip~~~vVI-~gt~~-----y--d~~~~---~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~ 1729 (2114)
|+++++|||+| +.+|| .|... | |+... ...|.+..+|+||+||||| +..|. +.|+.+.+
T Consensus 446 TdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR---g~~G~-i~lvt~~e 515 (666)
T 3o8b_A 446 TDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR---GRRGI-YRFVTPGE 515 (666)
T ss_dssp CTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS---SSCEE-EEESCCCC
T ss_pred CChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC---CCCCE-EEEEecch
Confidence 99999999998 77776 23111 1 11110 1178899999999999999 57899 88887654
No 107
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.92 E-value=4.5e-24 Score=297.01 Aligned_cols=328 Identities=17% Similarity=0.172 Sum_probs=209.0
Q ss_pred CCCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000129 494 TQLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (2114)
.+|+|+|.+++..++.. ..++|+++|||+|||.+++..+...+..+. ..+++||+|+ +|+.|+..++.+
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~---------~~rvLIVvP~-sLl~Qw~~E~~~ 221 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGA---------AERVLIIVPE-TLQHQWLVEMLR 221 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSS---------CCCEEEECCT-TTHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCC---------CCeEEEEeCH-HHHHHHHHHHHH
Confidence 47999999999988765 457999999999999999888877765542 2269999999 999999999987
Q ss_pred hhccCCcEEEEEeCCCccCh-----hhhccceEEEcCHhHHHHHHhccCC--CcccccccEEEEecccccccCC--chhH
Q 000129 573 RLQMYDVKVRELSGDQTLTR-----QQIEETQIIVTTPEKWDIITRKSGD--RTYTQLVKLLIIDEIHLLHDNR--GPVL 643 (2114)
Q Consensus 573 ~~~~~gi~v~~l~Gd~~~~~-----~~~~~~~IiV~TPek~d~l~r~~~~--~~~l~~v~liIiDEaH~l~d~r--g~~l 643 (2114)
++ |+++..++|+..... ......+|+|+|++.+ .+.... ......+++|||||||++.... ....
T Consensus 222 ~f---~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L---~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~ 295 (968)
T 3dmq_A 222 RF---NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFA---RRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSRE 295 (968)
T ss_dssp HS---CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHH---HTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHH
T ss_pred Hh---CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHH---hhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHH
Confidence 76 567777766542211 1234679999999954 222111 1223468999999999996521 1111
Q ss_pred HHHHHHHHHHHhhccccccEEEEccccCC--hHHHHH---HHhccc-------------------------cC-------
Q 000129 644 ESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVAL---FLRVNL-------------------------EK------- 686 (2114)
Q Consensus 644 e~iv~rl~~~~~~~~~~~riv~lSATlpn--~~dva~---~l~~~~-------------------------~~------- 686 (2114)
...+..+ .....++++||||... ..++.. |+.... ..
T Consensus 296 ~~~l~~L------~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~ 369 (968)
T 3dmq_A 296 YQAIEQL------AEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDE 369 (968)
T ss_dssp HHHHHHH------HTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGG
T ss_pred HHHHHHH------hhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHH
Confidence 2222222 1234568999999521 222111 111000 00
Q ss_pred --------------------------------------------ceEeecCCcccc---cce-eEEEeeccCchhHHH--
Q 000129 687 --------------------------------------------GLFYFDNSYRPV---PLS-QQYIGIQVKKPLQRF-- 716 (2114)
Q Consensus 687 --------------------------------------------~~~~f~~~~rpv---~l~-~~~~~~~~~~~~~~~-- 716 (2114)
+...+......+ |.. ...+.+.........
T Consensus 370 ~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~ 449 (968)
T 3dmq_A 370 LNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIK 449 (968)
T ss_dssp TTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHH
T ss_pred HHHHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHH
Confidence 000000000000 000 000000000000000
Q ss_pred --------------------------------------HHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhh
Q 000129 717 --------------------------------------QLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTAL 758 (2114)
Q Consensus 717 --------------------------------------~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~ 758 (2114)
..-...+.+ +.....++++||||+++..+..++..|...
T Consensus 450 ~~~~~~~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~-ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~-- 526 (968)
T 3dmq_A 450 VSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMG-YLTSHRSQKVLVICAKAATALQLEQVLRER-- 526 (968)
T ss_dssp HHHHTTCCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHH-HHHHTSSSCCCEECSSTHHHHHHHHHHHTT--
T ss_pred HHhhhhhhhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHH-HHHhCCCCCEEEEeCcHHHHHHHHHHHHHH--
Confidence 000111222 223345789999999999999998888642
Q ss_pred cccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCC--ceEEEechHhhhhcCC
Q 000129 759 ENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGH--VQVLVSTATLAWGVNL 836 (2114)
Q Consensus 759 ~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~--i~VLVaT~tla~GVdl 836 (2114)
....+..+||+|+..+|..+++.|++|. ++|||||+++++|+|+
T Consensus 527 ----------------------------------~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl 572 (968)
T 3dmq_A 527 ----------------------------------EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNF 572 (968)
T ss_dssp ----------------------------------TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCC
T ss_pred ----------------------------------cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCc
Confidence 1234778899999999999999999998 9999999999999999
Q ss_pred CceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCc
Q 000129 837 PAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890 (2114)
Q Consensus 837 P~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e 890 (2114)
|++++||+ ||++. ++..|.||+||+||.|..+....+.+.....
T Consensus 573 ~~~~~VI~----~d~p~------~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t 616 (968)
T 3dmq_A 573 QFASHMVM----FDLPF------NPDLLEQRIGRLDRIGQAHDIQIHVPYLEKT 616 (968)
T ss_dssp TTCCEEEC----SSCCS------SHHHHHHHHHTTSCSSSCSCCEEEEEEETTS
T ss_pred ccCcEEEE----ecCCC------CHHHHHHHhhccccCCCCceEEEEEecCCCh
Confidence 99999998 66653 7789999999999998554444444444443
No 108
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.91 E-value=3.3e-23 Score=271.52 Aligned_cols=323 Identities=16% Similarity=0.158 Sum_probs=206.9
Q ss_pred CCCCHHHHHHHHHHH---cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000129 1340 KHFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il---~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~ 1416 (2114)
..|+|+|.+++..+. ..+.+++++.|||+|||+++...+.. +......+ ++|||+| .+|+.|+.++++ +|..
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~-~~~~~~~~--~~LIv~P-~~l~~qw~~e~~-~~~~ 110 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSD-AKKENELT--PSLVICP-LSVLKNWEEELS-KFAP 110 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHH-HHHTTCCS--SEEEEEC-STTHHHHHHHHH-HHCT
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHH-HHhcCCCC--CEEEEcc-HHHHHHHHHHHH-HHCC
Confidence 379999999988653 45667999999999999998555444 44323334 8999999 568999999998 4543
Q ss_pred CCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHh
Q 000129 1417 GLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIAS 1496 (2114)
Q Consensus 1417 ~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~ 1496 (2114)
+.++..++|+... ......+|+|+|++.+..... .....+++||+||||.+.+.....+ ..+.
T Consensus 111 --~~~v~~~~g~~~~--~~~~~~~ivi~t~~~l~~~~~-----l~~~~~~~vIvDEaH~~kn~~~~~~----~~l~---- 173 (500)
T 1z63_A 111 --HLRFAVFHEDRSK--IKLEDYDIILTTYAVLLRDTR-----LKEVEWKYIVIDEAQNIKNPQTKIF----KAVK---- 173 (500)
T ss_dssp --TSCEEECSSSTTS--CCGGGSSEEEEEHHHHTTCHH-----HHTCCEEEEEEETGGGGSCTTSHHH----HHHH----
T ss_pred --CceEEEEecCchh--ccccCCcEEEeeHHHHhccch-----hcCCCcCEEEEeCccccCCHhHHHH----HHHH----
Confidence 4677777776532 234567999999998643222 1234689999999999975442211 1111
Q ss_pred hcCCCceEEEEcccCCC--hhHHH---HHhcCCC-------------------------------CceeecCCCC----C
Q 000129 1497 QVENKIRIVALSTSLAN--AKDLG---EWIGATS-------------------------------HGLFNFPPGV----R 1536 (2114)
Q Consensus 1497 ~~~~~~riV~lSATl~n--~~dla---~wl~~~~-------------------------------~~~~~f~~~~----r 1536 (2114)
.+ ...+.++||||+.. ..++. .|+.... ..++...... .
T Consensus 174 ~l-~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~ 252 (500)
T 1z63_A 174 EL-KSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIIN 252 (500)
T ss_dssp TS-CEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHT
T ss_pred hh-ccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhh
Confidence 22 24577999999843 22322 2221110 0011000000 0
Q ss_pred ccCcEE-EEecccccc-----hHHHHHh---------------------------c---------------C---HHHHH
Q 000129 1537 PVPLEI-HIQGVDITN-----FEARMQA---------------------------M---------------T---KPTFT 1565 (2114)
Q Consensus 1537 pv~l~~-~~~~~~~~~-----~~~~~~~---------------------------~---------------~---~~~~~ 1565 (2114)
..|-.. ......... +...... . . .....
T Consensus 253 ~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~ 332 (500)
T 1z63_A 253 DLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTME 332 (500)
T ss_dssp TSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHH
T ss_pred cCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHH
Confidence 111111 111111110 0000000 0 0 00112
Q ss_pred HHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCH
Q 000129 1566 AIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNK 1645 (2114)
Q Consensus 1566 ~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~ 1645 (2114)
.+......+.++||||+++..+..++..|. ...+.++..+||+++.
T Consensus 333 ~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~----------------------------------~~~~~~~~~~~g~~~~ 378 (500)
T 1z63_A 333 IIEEALDEGDKIAIFTQFVDMGKIIRNIIE----------------------------------KELNTEVPFLYGELSK 378 (500)
T ss_dssp HHHHHHTTTCCEEEECSCHHHHHHHHHHHH----------------------------------HHHTCCCCEEETTSCH
T ss_pred HHHHHHccCCcEEEEEehHHHHHHHHHHHH----------------------------------HhhCCCeEEEECCCCH
Confidence 233333567899999999998877765442 2235568899999999
Q ss_pred HHHHHHHHHHhcC-Cce-EEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEE
Q 000129 1646 TDQEVVSALFEAG-KIK-VCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVI 1723 (2114)
Q Consensus 1646 ~dR~~v~~~F~~g-~i~-VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~ii 1723 (2114)
.+|..+++.|++| ..+ +|+||+++++|+|+|++.+|| +++.|.++..+.||+||++|.|......++.
T Consensus 379 ~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi----------~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~ 448 (500)
T 1z63_A 379 KERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVI----------HFDRWWNPAVEDQATDRVYRIGQTRNVIVHK 448 (500)
T ss_dssp HHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEE----------ESSCCSCC---CHHHHTTTTTTTTSCEEEEE
T ss_pred HHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEE----------EeCCCCCcchHHHHHHHHHHcCCCCeeEEEE
Confidence 9999999999998 565 799999999999999999999 7889999999999999999998777777787
Q ss_pred EeecCc
Q 000129 1724 LCHAPR 1729 (2114)
Q Consensus 1724 l~~~~~ 1729 (2114)
++....
T Consensus 449 lv~~~t 454 (500)
T 1z63_A 449 LISVGT 454 (500)
T ss_dssp EEETTS
T ss_pred EEeCCC
Confidence 777654
No 109
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.91 E-value=1.4e-23 Score=292.14 Aligned_cols=332 Identities=14% Similarity=0.143 Sum_probs=213.1
Q ss_pred CCCCHHHHHHHHHHHcC-CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000129 1340 KHFNPIQTQVFTVLYNT-DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il~~-~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~ 1418 (2114)
..|+|+|.+++..++.. ..++|++++||+|||+++..++...+.. ...+ +++||+|+ +|+.|+..++.+.|
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~-g~~~--rvLIVvP~-sLl~Qw~~E~~~~f---- 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS-GAAE--RVLIIVPE-TLQHQWLVEMLRRF---- 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT-SSCC--CEEEECCT-TTHHHHHHHHHHHS----
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh-CCCC--eEEEEeCH-HHHHHHHHHHHHHh----
Confidence 37999999999988763 4579999999999999998777766655 3334 89999999 99999999998776
Q ss_pred CcEEEEEcCCcccc-----hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHH
Q 000129 1419 GMRVVELTGETAMD-----LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRY 1493 (2114)
Q Consensus 1419 g~~v~~l~G~~~~~-----~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~ 1493 (2114)
+.++..++|+.... ...+...+|+|+|++.+....... ......++++||+||||++.......- .....+..
T Consensus 224 ~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~-~~l~~~~~dlVIvDEAH~~kn~~~~~s-~~~~~l~~ 301 (968)
T 3dmq_A 224 NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRL-EHLCEAEWDLLVVDEAHHLVWSEDAPS-REYQAIEQ 301 (968)
T ss_dssp CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTT-HHHHTSCCCEEEECCSSCCCCBTTBCC-HHHHHHHH
T ss_pred CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHH-HHhhhcCCCEEEehhhHhhcCCCCcch-HHHHHHHH
Confidence 45666666654222 123345699999998764211110 112245789999999999975432210 01122222
Q ss_pred HHhhcCCCceEEEEcccCCC--hhHHH---HHhcCCCC--------------------------------------ceee
Q 000129 1494 IASQVENKIRIVALSTSLAN--AKDLG---EWIGATSH--------------------------------------GLFN 1530 (2114)
Q Consensus 1494 i~~~~~~~~riV~lSATl~n--~~dla---~wl~~~~~--------------------------------------~~~~ 1530 (2114)
+. ....++++||||+.. ..++. .++..... ..+.
T Consensus 302 L~---~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~ 378 (968)
T 3dmq_A 302 LA---EHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIG 378 (968)
T ss_dssp HH---TTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTC
T ss_pred Hh---hcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhc
Confidence 32 234579999999843 22111 11111000 0000
Q ss_pred ---------------------------------------cCC---CCCcc---CcEEEEecccccchHHHHH--------
Q 000129 1531 ---------------------------------------FPP---GVRPV---PLEIHIQGVDITNFEARMQ-------- 1557 (2114)
Q Consensus 1531 ---------------------------------------f~~---~~rpv---~l~~~~~~~~~~~~~~~~~-------- 1557 (2114)
+.. ..... .........+. .+.....
T Consensus 379 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~-~~~~~~~~~~~~~~~ 457 (968)
T 3dmq_A 379 EQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPT-QYQTAIKVSGIMGAR 457 (968)
T ss_dssp TTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCH-HHHHHHHHHHHTTCC
T ss_pred chhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCH-HHHHHHHHHhhhhhh
Confidence 000 00000 00000000000 0000000
Q ss_pred ---------------------------hcCHHHHHHHHHHh--cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccc
Q 000129 1558 ---------------------------AMTKPTFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAF 1608 (2114)
Q Consensus 1558 ---------------------------~~~~~~~~~i~~~l--~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~ 1608 (2114)
.........+...+ ..++++||||+++..+..++..|..
T Consensus 458 ~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~------------ 525 (968)
T 3dmq_A 458 KSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLRE------------ 525 (968)
T ss_dssp SSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHT------------
T ss_pred hhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHH------------
Confidence 00011122222222 4678999999999999888866632
Q ss_pred cCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCC--ceEEEecCccccccCCCCcEEEEEeee
Q 000129 1609 LLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGK--IKVCVMSSSMCWGVPLTAHLVVVMGTQ 1686 (2114)
Q Consensus 1609 l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~--i~VLVaT~~la~Gvdip~~~vVI~gt~ 1686 (2114)
..+..+..+||+|+..+|..+++.|++|+ ++|||||+++++|+|+|++.+||
T Consensus 526 ----------------------~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI---- 579 (968)
T 3dmq_A 526 ----------------------REGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMV---- 579 (968)
T ss_dssp ----------------------TTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEE----
T ss_pred ----------------------HcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEE----
Confidence 12456899999999999999999999998 99999999999999999999999
Q ss_pred EecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCc
Q 000129 1687 YYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1687 ~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~ 1729 (2114)
+++.|.++..|.||+||+||.|......++.++....
T Consensus 580 ------~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t 616 (968)
T 3dmq_A 580 ------MFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKT 616 (968)
T ss_dssp ------CSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTS
T ss_pred ------EecCCCCHHHHHHHhhccccCCCCceEEEEEecCCCh
Confidence 8999999999999999999996544445555555443
No 110
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.91 E-value=5.1e-23 Score=269.78 Aligned_cols=324 Identities=16% Similarity=0.154 Sum_probs=203.5
Q ss_pred CCCCHHHHHHHHHHH---cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 494 TQLNRVQSRVYKSAL---SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~~l---~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
..|+|+|.+++..+. ..+.++|+++|||+|||.+++..+......+ ...++|||+| .+|+.|+.+++
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~---------~~~~~LIv~P-~~l~~qw~~e~ 105 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKEN---------ELTPSLVICP-LSVLKNWEEEL 105 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTT---------CCSSEEEEEC-STTHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcC---------CCCCEEEEcc-HHHHHHHHHHH
Confidence 379999999987653 4556799999999999999866555443322 1236999999 57999999999
Q ss_pred HHhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHH
Q 000129 571 SNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVART 650 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl 650 (2114)
.+++. ++++..++|+.. .......+|+|+||+.+..... .....+++||+||||.+.+....... .+
T Consensus 106 ~~~~~--~~~v~~~~g~~~--~~~~~~~~ivi~t~~~l~~~~~-----l~~~~~~~vIvDEaH~~kn~~~~~~~-~l--- 172 (500)
T 1z63_A 106 SKFAP--HLRFAVFHEDRS--KIKLEDYDIILTTYAVLLRDTR-----LKEVEWKYIVIDEAQNIKNPQTKIFK-AV--- 172 (500)
T ss_dssp HHHCT--TSCEEECSSSTT--SCCGGGSSEEEEEHHHHTTCHH-----HHTCCEEEEEEETGGGGSCTTSHHHH-HH---
T ss_pred HHHCC--CceEEEEecCch--hccccCCcEEEeeHHHHhccch-----hcCCCcCEEEEeCccccCCHhHHHHH-HH---
Confidence 98764 467777777653 2334578999999997621111 11235789999999999753322211 11
Q ss_pred HHHHhhccccccEEEEccccC--ChHHHHH---HHhcccc-----------------------------CceEeecCCc-
Q 000129 651 VRQIETTKEHIRLVGLSATLP--NYEDVAL---FLRVNLE-----------------------------KGLFYFDNSY- 695 (2114)
Q Consensus 651 ~~~~~~~~~~~riv~lSATlp--n~~dva~---~l~~~~~-----------------------------~~~~~f~~~~- 695 (2114)
... ...+.++||||.. +..++.. |+....- .+........
T Consensus 173 ----~~l-~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~ 247 (500)
T 1z63_A 173 ----KEL-KSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYD 247 (500)
T ss_dssp ----HTS-CEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTC
T ss_pred ----Hhh-ccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccc
Confidence 122 3456799999952 2333322 2211000 0011100000
Q ss_pred ----ccccce-eEEEeeccCchhHH-HHH---------------------------hh----------------------
Q 000129 696 ----RPVPLS-QQYIGIQVKKPLQR-FQL---------------------------MN---------------------- 720 (2114)
Q Consensus 696 ----rpv~l~-~~~~~~~~~~~~~~-~~~---------------------------~~---------------------- 720 (2114)
...|-. ...+.+........ +.. +.
T Consensus 248 ~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~ 327 (500)
T 1z63_A 248 KAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKM 327 (500)
T ss_dssp HHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHH
T ss_pred cchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhH
Confidence 001111 11111111100000 000 00
Q ss_pred HHHHHHHHHHh-CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEE
Q 000129 721 DLCYEKVVAVA-GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAI 799 (2114)
Q Consensus 721 ~~~~~~i~~~~-~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~ 799 (2114)
..+.+.+.+.. .+.++||||+++..+..++..|.... ...+..
T Consensus 328 ~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~------------------------------------~~~~~~ 371 (500)
T 1z63_A 328 IRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKEL------------------------------------NTEVPF 371 (500)
T ss_dssp HHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHH------------------------------------TCCCCE
T ss_pred HHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhh------------------------------------CCCeEE
Confidence 01112222222 46799999999999988888876531 123567
Q ss_pred ecCCCCHHHHHHHHHHHhCC-Cce-EEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCC
Q 000129 800 HHAGMTRGDRQLVEDLFGDG-HVQ-VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD 877 (2114)
Q Consensus 800 hHagl~~~~R~~v~~~F~~g-~i~-VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d 877 (2114)
+||+++..+|..+++.|++| .++ +|+||+++++|+|+|++++||.++.+++|. .|.||+||++|.|..
T Consensus 372 ~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~----------~~~Q~~gR~~R~Gq~ 441 (500)
T 1z63_A 372 LYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPA----------VEDQATDRVYRIGQT 441 (500)
T ss_dssp EETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC-------------CHHHHTTTTTTTT
T ss_pred EECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcc----------hHHHHHHHHHHcCCC
Confidence 89999999999999999988 565 799999999999999999999966666554 599999999999977
Q ss_pred CceEEEEEcCCCcH
Q 000129 878 SYGEGIIITGHSEL 891 (2114)
Q Consensus 878 ~~G~~iil~~~~e~ 891 (2114)
+...++.++.....
T Consensus 442 ~~v~v~~lv~~~ti 455 (500)
T 1z63_A 442 RNVIVHKLISVGTL 455 (500)
T ss_dssp SCEEEEEEEETTSH
T ss_pred CeeEEEEEEeCCCH
Confidence 76667777666543
No 111
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.91 E-value=9.7e-24 Score=251.91 Aligned_cols=226 Identities=19% Similarity=0.195 Sum_probs=141.9
Q ss_pred EeccccccCcccccccccccCCCCCCCCCCccCCCCCCcccc------------cChhHHHHHhc-CCCCCCHHHHHHHH
Q 000129 1285 VVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTA------------LRNPLYEALYQ-GFKHFNPIQTQVFT 1351 (2114)
Q Consensus 1285 ~vSD~wl~~e~~~~is~~~l~lp~~~~~~t~lldl~p~~~~~------------L~~~~~~~l~~-gf~~~~~iQ~q~~~ 1351 (2114)
-.||.|.+.+....-+..++..|+..........++.....+ +.....+.+.. ||..|+|+|.++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~ 86 (262)
T 3ly5_A 7 HSSGVDLGTENLYFQSMNNVEKPDNDEDESEVPSLPLGLTGAFEDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIR 86 (262)
T ss_dssp ---------------------------------------CCBSGGGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHH
T ss_pred cccccCccchhHHHHhhcccCCCccccccccCCCCccccccccccCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHH
Confidence 358888888876666666665555444333332222222111 44455555554 79999999999999
Q ss_pred HHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc--CCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCc
Q 000129 1352 VLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS--ETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGET 1429 (2114)
Q Consensus 1352 ~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~--~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~ 1429 (2114)
.++.+ +|++++||||||||++|++|+++.+.... ...+.++||++||++||.|+++.+++ +....+..+..++|+.
T Consensus 87 ~~~~~-~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~-~~~~~~~~~~~~~g~~ 164 (262)
T 3ly5_A 87 PLLEG-RDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKE-LMTHHVHTYGLIMGGS 164 (262)
T ss_dssp HHHHT-CCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHH-HTTTCCSCEEEECSSS
T ss_pred HHhCC-CcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHH-HHhhcCceEEEEECCC
Confidence 99986 55999999999999999999999887521 11233899999999999999999995 5445688899999987
Q ss_pred ccchh---hccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEE
Q 000129 1430 AMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVA 1506 (2114)
Q Consensus 1430 ~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~ 1506 (2114)
..... .....+|+|+||++|..++++.. ...+.++++||+||||++.+.+ +...+..+...++...|+++
T Consensus 165 ~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~-~~~~~~l~~lViDEah~l~~~~------~~~~l~~i~~~~~~~~q~l~ 237 (262)
T 3ly5_A 165 NRSAEAQKLGNGINIIVATPGRLLDHMQNTP-GFMYKNLQCLVIDEADRILDVG------FEEELKQIIKLLPTRRQTML 237 (262)
T ss_dssp CHHHHHHHHHHCCSEEEECHHHHHHHHHHCT-TCCCTTCCEEEECSHHHHHHTT------CHHHHHHHHHHSCSSSEEEE
T ss_pred CHHHHHHHhcCCCCEEEEcHHHHHHHHHccC-CcccccCCEEEEcChHHHhhhh------HHHHHHHHHHhCCCCCeEEE
Confidence 65422 22457999999999988877632 2357889999999999987653 23334444455577899999
Q ss_pred EcccCCCh-hHHHH
Q 000129 1507 LSTSLANA-KDLGE 1519 (2114)
Q Consensus 1507 lSATl~n~-~dla~ 1519 (2114)
||||+++. .+++.
T Consensus 238 ~SAT~~~~v~~~~~ 251 (262)
T 3ly5_A 238 FSATQTRKVEDLAR 251 (262)
T ss_dssp ECSSCCHHHHHHHH
T ss_pred EEecCCHHHHHHHH
Confidence 99999863 34444
No 112
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.90 E-value=1.4e-23 Score=250.64 Aligned_cols=186 Identities=19% Similarity=0.230 Sum_probs=149.0
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
+++.+...+ .||.+|+++|.++++.++.+ ++++++||||||||++|++|+++.+...... ...+.++||++||
T Consensus 61 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~----~~~~~~~lil~Pt 135 (262)
T 3ly5_A 61 VNENTLKAIKEMGFTNMTEIQHKSIRPLLEG-RDLLAAAKTGSGKTLAFLIPAVELIVKLRFM----PRNGTGVLILSPT 135 (262)
T ss_dssp CCHHHHHHHHHTTCCBCCHHHHHHHHHHHHT-CCCEECCCTTSCHHHHHHHHHHHHHHHTTCC----GGGCCCEEEECSS
T ss_pred cCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CcEEEEccCCCCchHHHHHHHHHHHHhcccc----ccCCceEEEEeCC
Confidence 566666666 79999999999999999887 5599999999999999999999998764211 1235689999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccc
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (2114)
++||.|+++.+++++...++.+..++|+....... ..+++|+|+||++|....+.... ..++++++|||||||++.
T Consensus 136 ~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~-~~~~~l~~lViDEah~l~ 214 (262)
T 3ly5_A 136 RELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPG-FMYKNLQCLVIDEADRIL 214 (262)
T ss_dssp HHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTT-CCCTTCCEEEECSHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCC-cccccCCEEEEcChHHHh
Confidence 99999999999999988899999999987765432 24689999999998655554432 357789999999999988
Q ss_pred c-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhc
Q 000129 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV 682 (2114)
Q Consensus 637 d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~ 682 (2114)
+ ++++.++.++.+ .+...|+++||||+|+ ++..+...
T Consensus 215 ~~~~~~~l~~i~~~-------~~~~~q~l~~SAT~~~--~v~~~~~~ 252 (262)
T 3ly5_A 215 DVGFEEELKQIIKL-------LPTRRQTMLFSATQTR--KVEDLARI 252 (262)
T ss_dssp HTTCHHHHHHHHHH-------SCSSSEEEEECSSCCH--HHHHHHHH
T ss_pred hhhHHHHHHHHHHh-------CCCCCeEEEEEecCCH--HHHHHHHH
Confidence 7 577777766554 3567899999999984 45555543
No 113
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.90 E-value=5.9e-23 Score=249.65 Aligned_cols=195 Identities=16% Similarity=0.267 Sum_probs=151.6
Q ss_pred CCCCCcccccChhHHHHHhc-CCCCCCHHHHHHHHHHHcC-CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEE
Q 000129 1318 DLQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNT-DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVY 1395 (2114)
Q Consensus 1318 dl~p~~~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~-~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~ 1395 (2114)
....+.-..|.....+.+.. ||..|+|+|.++++.++.+ +.|++++||||||||++|++|+++.+.... .++++||
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~--~~~~~li 167 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN--KYPQCLC 167 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTS--CSCCEEE
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccC--CCceEEE
Confidence 33344444566666777765 7999999999999999986 477999999999999999999999887632 3348999
Q ss_pred EcccHHHHHHHHHHHHHHhcCC-CCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccc
Q 000129 1396 IAPLEALAKERYRDWEIKFGQG-LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELH 1474 (2114)
Q Consensus 1396 I~Ptr~La~q~~~~~~~~f~~~-~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH 1474 (2114)
++||++||.|+++.++ .++.. .++++..+.|+..........++|+||||+++..++.+. ....++++++||+||||
T Consensus 168 l~PtreLa~Q~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~-~~~~l~~l~~lVlDEad 245 (300)
T 3fmo_B 168 LSPTYELALQTGKVIE-QMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL-KFIDPKKIKVFVLDEAD 245 (300)
T ss_dssp ECSSHHHHHHHHHHHH-HHTTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTT-CCCCGGGCSEEEETTHH
T ss_pred EcCcHHHHHHHHHHHH-HHHhhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhc-CCCChhhceEEEEeCHH
Confidence 9999999999999998 45543 478888899887765544556799999999998877542 23457899999999999
Q ss_pred cccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHHHh
Q 000129 1475 LIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWI 1521 (2114)
Q Consensus 1475 ~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~wl 1521 (2114)
.+.+..| +...+..+...++...|++++|||+++. ..++..+
T Consensus 246 ~l~~~~~-----~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~ 288 (300)
T 3fmo_B 246 VMIATQG-----HQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKV 288 (300)
T ss_dssp HHHHSTT-----HHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHH
T ss_pred HHhhccC-----cHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHH
Confidence 9876332 4444555666677889999999999873 3455544
No 114
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.89 E-value=6.1e-23 Score=242.32 Aligned_cols=188 Identities=19% Similarity=0.193 Sum_probs=148.2
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
.+++.+...+ .||.+|+++|.++++.++.+ .+++++||||||||++|++|++..+...... ....+.++||++|
T Consensus 35 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g-~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~---~~~~~~~~lil~P 110 (242)
T 3fe2_A 35 NFPANVMDVIARQNFTEPTAIQAQGWPVALSG-LDMVGVAQTGSGKTLSYLLPAIVHINHQPFL---ERGDGPICLVLAP 110 (242)
T ss_dssp TCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHT-CCEEEEECTTSCHHHHHHHHHHHHHHTSCCC---CTTCCCSEEEECS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCcCHHHHHHHHHHHHHHHhcccc---ccCCCCEEEEEeC
Confidence 3677777776 68999999999999998876 4699999999999999999999998754311 1123568999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccc
Q 000129 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l 635 (2114)
+++|+.|+++.+.+++...++++..++|+.....+. ..+++|+|+||+++..+.+... ..++++++|||||||++
T Consensus 111 t~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~--~~~~~~~~lViDEah~l 188 (242)
T 3fe2_A 111 TRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGK--TNLRRTTYLVLDEADRM 188 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTS--CCCTTCCEEEETTHHHH
T ss_pred cHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC--CCcccccEEEEeCHHHH
Confidence 999999999999998888899999999987765432 3468999999999844433332 35788999999999998
Q ss_pred cc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhcc
Q 000129 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN 683 (2114)
Q Consensus 636 ~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~ 683 (2114)
.+ ++++.++.++.+ .++..|+++||||+|+ ++..+....
T Consensus 189 ~~~~~~~~~~~i~~~-------~~~~~q~~~~SAT~~~--~~~~~~~~~ 228 (242)
T 3fe2_A 189 LDMGFEPQIRKIVDQ-------IRPDRQTLMWSATWPK--EVRQLAEDF 228 (242)
T ss_dssp HHTTCHHHHHHHHTT-------SCSSCEEEEEESCCCH--HHHHHHHHH
T ss_pred hhhCcHHHHHHHHHh-------CCccceEEEEEeecCH--HHHHHHHHH
Confidence 87 577777666443 3568899999999984 455555433
No 115
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.89 E-value=4.6e-22 Score=273.74 Aligned_cols=349 Identities=13% Similarity=0.135 Sum_probs=195.6
Q ss_pred CCCHHHHHHHHHHHcC-------------CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHH
Q 000129 495 QLNRVQSRVYKSALSS-------------ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~-------------~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ra 561 (2114)
.|+|+|.+|++.++.. +.+.++++|||||||+++ +++++.+.... ...++|||+|+++
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~--------~~~rvLvlvpr~e 341 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELD--------FIDKVFFVVDRKD 341 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCT--------TCCEEEEEECGGG
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcC--------CCceEEEEeCcHH
Confidence 5999999999998762 356999999999999998 56665553221 1248999999999
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEeCCCccCh--hhh--ccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc
Q 000129 562 LVAEVVGNLSNRLQMYDVKVRELSGDQTLTR--QQI--EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (2114)
Q Consensus 562 La~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~--~~~--~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d 637 (2114)
|+.|+.+.|..+... . +.|..+... ..+ ...+|+|+||+++..+.+.......+....+||+||||++..
T Consensus 342 L~~Q~~~~f~~f~~~-~-----v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~ 415 (1038)
T 2w00_A 342 LDYQTMKEYQRFSPD-S-----VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF 415 (1038)
T ss_dssp CCHHHHHHHHTTSTT-C-----SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH
T ss_pred HHHHHHHHHHHhccc-c-----cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc
Confidence 999999999875432 1 123222211 112 368999999999854443322123455778999999998642
Q ss_pred CCchhHHHHHHHHHHHHhhccccccEEEEccccCCh------HHHHHHHhccccCceEeecC-----CcccccceeEEEe
Q 000129 638 NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY------EDVALFLRVNLEKGLFYFDN-----SYRPVPLSQQYIG 706 (2114)
Q Consensus 638 ~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~------~dva~~l~~~~~~~~~~f~~-----~~rpv~l~~~~~~ 706 (2114)
|..+.. +. ...++.+++|||||.... .....+++.. ++.+.- .-.-+|+...+..
T Consensus 416 --~~~~~~----I~----~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~----i~~Y~l~~AI~dg~l~p~~v~y~~ 481 (1038)
T 2w00_A 416 --GEAQKN----LK----KKFKRYYQFGFTGTPIFPENALGSETTASVFGRE----LHSYVITDAIRDEKVLKFKVDYND 481 (1038)
T ss_dssp --HHHHHH----HH----HHCSSEEEEEEESSCCCSTTCTTSCCHHHHHCSE----EEEECHHHHHHHTSSCCEEEEECC
T ss_pred --hHHHHH----HH----HhCCcccEEEEeCCccccccchhhhHHHHHhCCe----eEeecHHHHHhCCCcCCeEEEEEe
Confidence 222222 21 123568899999996532 1344444321 111100 0001122222221
Q ss_pred ecc-------C-c--------------hhHHHHHhhHHHHHHHHHHh-------CCCeEEEEecChHHHHHHHHHHHHHh
Q 000129 707 IQV-------K-K--------------PLQRFQLMNDLCYEKVVAVA-------GKHQVLIFVHSRKETAKTARAIRDTA 757 (2114)
Q Consensus 707 ~~~-------~-~--------------~~~~~~~~~~~~~~~i~~~~-------~~~~vLVFv~sr~~~~~~a~~L~~~~ 757 (2114)
+.. . . ...+...+...+........ .+.++||||+|+..|..++..|...+
T Consensus 482 v~~~~~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~ 561 (1038)
T 2w00_A 482 VRPQFKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQ 561 (1038)
T ss_dssp CCGGGHHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred ccchhhhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhh
Confidence 100 0 0 00111111111212221221 24589999999999999999998765
Q ss_pred hcc-------cccc--cccccCchhHHHHHhhhcccC---------cc----hhhhhcc-----CceEEecC-CCCHHHH
Q 000129 758 LEN-------DTLG--RFLKEDSVSREILQSHTDMVK---------SN----DLKDLLP-----YGFAIHHA-GMTRGDR 809 (2114)
Q Consensus 758 ~~~-------~~l~--~~l~~~~~~~~~l~~~~~~~~---------~~----~L~~ll~-----~gv~~hHa-gl~~~~R 809 (2114)
... ..+. ..+..+ .+.+. . ...... +. .+...+. +|-.+.+. +-....|
T Consensus 562 ~~~~~~~~~~~~~k~avv~s~~-~~~~~-~-~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R 638 (1038)
T 2w00_A 562 EEAANKSATYKPLRIATIFSFA-ANEEQ-N-AIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYY 638 (1038)
T ss_dssp HHHTTTSSSCCCCCEEEECCCC-C--------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHH
T ss_pred hhhcccccccccCcEEEEEeCC-Ccccc-c-cccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHH
Confidence 210 0000 000000 00000 0 000000 00 0000000 00000000 0012358
Q ss_pred HHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCC--CceEEEEEc
Q 000129 810 QLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD--SYGEGIIIT 886 (2114)
Q Consensus 810 ~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d--~~G~~iil~ 886 (2114)
..+.+.|++|.++|||+|+.+.+|+|+|.+.+++ +|.+. +...|+||+||+||.+.+ ..|.++-+.
T Consensus 639 ~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l~tly-----lDkpl------~~~~liQaIGRtnR~~~~~K~~G~IVdf~ 706 (1038)
T 2w00_A 639 RDLAQRVKNQDIDLLIVVGMFLTGFDAPTLNTLF-----VDKNL------RYHGLMQAFSRTNRIYDATKTFGNIVTFR 706 (1038)
T ss_dssp HHHHHHHHTTSSSEEEESSTTSSSCCCTTEEEEE-----EESCC------CHHHHHHHHHTTCCCCCTTCCSEEEEESS
T ss_pred HHHHHHHHcCCCeEEEEcchHHhCcCcccccEEE-----EccCC------CccceeehhhccCcCCCCCCCcEEEEEcc
Confidence 8999999999999999999999999999997655 55543 677899999999998753 234444443
No 116
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.89 E-value=6.4e-22 Score=272.27 Aligned_cols=366 Identities=14% Similarity=0.190 Sum_probs=213.2
Q ss_pred CCCHHHHHHHHHHHcC-------------CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHH
Q 000129 1341 HFNPIQTQVFTVLYNT-------------DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~-------------~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~ 1407 (2114)
.|+|+|.+|++.++.. +.+.+++++||||||+++ +++++.+... +...++|||+|+++|+.|+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~--~~~~rvLvlvpr~eL~~Q~~ 347 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL--DFIDKVFFVVDRKDLDYQTM 347 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC--TTCCEEEEEECGGGCCHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc--CCCceEEEEeCcHHHHHHHH
Confidence 5999999999998751 356999999999999998 6666655442 22239999999999999999
Q ss_pred HHHHHHhcCCCCcEEEEEcCCccc-c-hhhc--cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCch
Q 000129 1408 RDWEIKFGQGLGMRVVELTGETAM-D-LKLL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483 (2114)
Q Consensus 1408 ~~~~~~f~~~~g~~v~~l~G~~~~-~-~~~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~ 1483 (2114)
+.+. .|+.. . +.|..+. . ...+ ..++|+|+||+++..++........+....+||+||||+... |
T Consensus 348 ~~f~-~f~~~---~---v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~--~-- 416 (1038)
T 2w00_A 348 KEYQ-RFSPD---S---VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF--G-- 416 (1038)
T ss_dssp HHHH-TTSTT---C---SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH--H--
T ss_pred HHHH-Hhccc---c---cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc--h--
Confidence 9888 46532 1 1222221 1 1223 356999999999988765422122456789999999998642 1
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEEcccCCCh------hHHHHHhcCCCCceeecCC-----CCCccCcEEEEecccccch
Q 000129 1484 LEVIVSRMRYIASQVENKIRIVALSTSLANA------KDLGEWIGATSHGLFNFPP-----GVRPVPLEIHIQGVDITNF 1552 (2114)
Q Consensus 1484 le~i~srl~~i~~~~~~~~riV~lSATl~n~------~dla~wl~~~~~~~~~f~~-----~~rpv~l~~~~~~~~~~~~ 1552 (2114)
.....+ ...+ ++.++++||||+... .....++|.. ++.+.- ...-+|+.+....... .+
T Consensus 417 --~~~~~I---~~~~-p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~---i~~Y~l~~AI~dg~l~p~~v~y~~v~~-~~ 486 (1038)
T 2w00_A 417 --EAQKNL---KKKF-KRYYQFGFTGTPIFPENALGSETTASVFGRE---LHSYVITDAIRDEKVLKFKVDYNDVRP-QF 486 (1038)
T ss_dssp --HHHHHH---HHHC-SSEEEEEEESSCCCSTTCTTSCCHHHHHCSE---EEEECHHHHHHHTSSCCEEEEECCCCG-GG
T ss_pred --HHHHHH---HHhC-CcccEEEEeCCccccccchhhhHHHHHhCCe---eEeecHHHHHhCCCcCCeEEEEEeccc-hh
Confidence 122222 2333 357999999999753 2456666643 111110 0011233332221110 00
Q ss_pred H--------HHHHh-------cCH----HHHHHHHHHhc----------CCCCEEEEeCChHHHHHHHHHHHHhhcc---
Q 000129 1553 E--------ARMQA-------MTK----PTFTAIVQHAK----------NEKPALVFVPSRKYVRLTAVDLMTYSSM--- 1600 (2114)
Q Consensus 1553 ~--------~~~~~-------~~~----~~~~~i~~~l~----------~~~~~LVFv~sr~~a~~la~~L~~~~~~--- 1600 (2114)
. ..... ... .....+..+.. .+.++||||+|+..|..++..|......
T Consensus 487 ~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~ 566 (1038)
T 2w00_A 487 KSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAAN 566 (1038)
T ss_dssp HHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred hhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcc
Confidence 0 00000 011 11222333221 2357999999999999999988765421
Q ss_pred --CC-c-ccc-cccCCCcc-------cc-----hhh-HhhhhHHHHHHHh-----ccceEeecC-CCCHHHHHHHHHHHh
Q 000129 1601 --DG-D-QKS-AFLLWPAE-------EV-----EPF-IDNIQEEMLKATL-----RHGVGYLHE-GLNKTDQEVVSALFE 1656 (2114)
Q Consensus 1601 --~~-~-~~~-~~l~~~~~-------~l-----~~~-~~~i~d~~L~~~l-----~~gV~~~H~-~ls~~dR~~v~~~F~ 1656 (2114)
.. . .+. ...+.+.. .+ .+. ...-....+...+ .+|-.+.+. +-....|..+.+.|+
T Consensus 567 ~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk 646 (1038)
T 2w00_A 567 KSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVK 646 (1038)
T ss_dssp TSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHH
T ss_pred cccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHH
Confidence 00 0 000 01111000 00 000 0000000010000 011111000 011346899999999
Q ss_pred cCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCC--CceEEEEEeecCcHHHHH
Q 000129 1657 AGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLD--NSGKCVILCHAPRKEYYK 1734 (2114)
Q Consensus 1657 ~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~--~~G~~iil~~~~~~~~~~ 1734 (2114)
+|.++|||+|+++.+|+|+|.+.+++ .+.|.+...|+||+||++|.+.+ ..|.++-+.. ....+.
T Consensus 647 ~g~i~ILIvvd~lltGfDiP~l~tly-----------lDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~--~~~~l~ 713 (1038)
T 2w00_A 647 NQDIDLLIVVGMFLTGFDAPTLNTLF-----------VDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD--LERSTI 713 (1038)
T ss_dssp TTSSSEEEESSTTSSSCCCTTEEEEE-----------EESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC--CHHHHH
T ss_pred cCCCeEEEEcchHHhCcCcccccEEE-----------EccCCCccceeehhhccCcCCCCCCCcEEEEEccc--cHHHHH
Confidence 99999999999999999999997664 56788889999999999998642 2466665553 455566
Q ss_pred HHHHhccCC
Q 000129 1735 KFLRLTQNP 1743 (2114)
Q Consensus 1735 ~~lRl~~nP 1743 (2114)
..+++..+.
T Consensus 714 ~Al~~y~~~ 722 (1038)
T 2w00_A 714 DAITLFGDK 722 (1038)
T ss_dssp HHHHHTSCS
T ss_pred HHHHHHhCC
Confidence 666555443
No 117
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.89 E-value=5.8e-23 Score=249.72 Aligned_cols=186 Identities=18% Similarity=0.258 Sum_probs=145.0
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA 557 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~ia 557 (2114)
.|++++...+ .||.+|+++|.++++.++.+ +.|++++||||||||++|++|+++.+.... .++++||++
T Consensus 98 ~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~--------~~~~~lil~ 169 (300)
T 3fmo_B 98 RLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN--------KYPQCLCLS 169 (300)
T ss_dssp TCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTS--------CSCCEEEEC
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccC--------CCceEEEEc
Confidence 3677777766 79999999999999999886 467999999999999999999999875432 345899999
Q ss_pred ccHHHHHHHHHHHHHhhccC-CcEEEEEeCCCccChhhhccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccccc
Q 000129 558 PMKALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 558 P~raLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l 635 (2114)
||++||.|+++.+..+...+ ++.+..+.|+..........++|+|+||+++ +.+.+.. ...++++++|||||||++
T Consensus 170 PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~--~~~l~~l~~lVlDEad~l 247 (300)
T 3fmo_B 170 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLK--FIDPKKIKVFVLDEADVM 247 (300)
T ss_dssp SSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTC--CCCGGGCSEEEETTHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcC--CCChhhceEEEEeCHHHH
Confidence 99999999999999877654 7889999998887776667889999999997 4443322 245789999999999998
Q ss_pred ccCCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhcc
Q 000129 636 HDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN 683 (2114)
Q Consensus 636 ~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~ 683 (2114)
.+..| +...+.++ ....+..+|++++|||+|+ .+..+....
T Consensus 248 ~~~~~--~~~~~~~i---~~~~~~~~q~i~~SAT~~~--~v~~~a~~~ 288 (300)
T 3fmo_B 248 IATQG--HQDQSIRI---QRMLPRNCQMLLFSATFED--SVWKFAQKV 288 (300)
T ss_dssp HHSTT--HHHHHHHH---HTTSCTTCEEEEEESCCCH--HHHHHHHHH
T ss_pred hhccC--cHHHHHHH---HHhCCCCCEEEEEeccCCH--HHHHHHHHH
Confidence 86322 22222222 2334668999999999985 455555443
No 118
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.89 E-value=5.9e-21 Score=243.41 Aligned_cols=346 Identities=16% Similarity=0.178 Sum_probs=228.8
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.++++|....-.+..| . |....||+|||++|.+|++-....+ ..+.+++|+..||.+-++.+..++
T Consensus 75 r~~dvQligg~~L~~G-~--iaEM~TGEGKTLva~lp~~lnAL~G-----------~~vhVvT~ndyLA~rdae~m~~l~ 140 (822)
T 3jux_A 75 RPFDVQVMGGIALHEG-K--VAEMKTGEGKTLAATMPIYLNALIG-----------KGVHLVTVNDYLARRDALWMGPVY 140 (822)
T ss_dssp CCCHHHHHHHHHHHTT-C--EEECCTTSCHHHHTHHHHHHHHTTS-----------SCEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCC-C--hhhccCCCCccHHHHHHHHHHHhcC-----------CceEEEeccHHHHHhHHHHHHHHH
Confidence 5788998887755444 3 8899999999999999987544333 258999999999999999999999
Q ss_pred ccCCcEEEEEeCC--------------------------------------------------Cc-cChhhhccceEEEc
Q 000129 575 QMYDVKVRELSGD--------------------------------------------------QT-LTRQQIEETQIIVT 603 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd--------------------------------------------------~~-~~~~~~~~~~IiV~ 603 (2114)
..+|++|+.++.+ .+ ..++..-.++|+++
T Consensus 141 ~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItYg 220 (822)
T 3jux_A 141 LFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYG 220 (822)
T ss_dssp HHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEEE
T ss_pred HHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEEc
Confidence 9999999998872 11 11223346899999
Q ss_pred CHhHH--HHHHhcc---CCCcccccccEEEEecccccc-c-CCchh-----------HHHHHHH----------------
Q 000129 604 TPEKW--DIITRKS---GDRTYTQLVKLLIIDEIHLLH-D-NRGPV-----------LESIVAR---------------- 649 (2114)
Q Consensus 604 TPek~--d~l~r~~---~~~~~l~~v~liIiDEaH~l~-d-~rg~~-----------le~iv~r---------------- 649 (2114)
|..-+ |.|.-+. .+........+.||||||.++ | .|.|. +-..+.+
T Consensus 221 Tn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek 300 (822)
T 3jux_A 221 TNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEK 300 (822)
T ss_dssp EHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCS
T ss_pred cCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcc
Confidence 99886 6665543 223345678999999999652 2 12110 0000000
Q ss_pred ----------------------------------H---HHHHhhc-----------------------------------
Q 000129 650 ----------------------------------T---VRQIETT----------------------------------- 657 (2114)
Q Consensus 650 ----------------------------------l---~~~~~~~----------------------------------- 657 (2114)
+ ++.....
T Consensus 301 ~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQ 380 (822)
T 3jux_A 301 ARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQ 380 (822)
T ss_dssp SSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHH
T ss_pred cCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHH
Confidence 0 0000000
Q ss_pred --------------------------cccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeE-EEeeccC
Q 000129 658 --------------------------KEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ-YIGIQVK 710 (2114)
Q Consensus 658 --------------------------~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~-~~~~~~~ 710 (2114)
..-.++.|||+|+.. +-..|.... .-.+.. .+..+|+.-... ...+.
T Consensus 381 aiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~t--e~~Ef~~iY-~l~vv~-IPtnkp~~R~d~~d~vy~-- 454 (822)
T 3jux_A 381 AIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKT--EESEFVQVY-GMEVVV-IPTHKPMIRKDHDDLVFR-- 454 (822)
T ss_dssp HHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGG--GHHHHHHHS-CCCEEE-CCCSSCCCCEECCCEEES--
T ss_pred HHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCch--HHHHHHHHh-CCeEEE-ECCCCCcceeecCcEEEe--
Confidence 001268999999875 223343332 122333 344555432211 11111
Q ss_pred chhHHHHHhhHHHHHHHHHH-hCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchh
Q 000129 711 KPLQRFQLMNDLCYEKVVAV-AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDL 789 (2114)
Q Consensus 711 ~~~~~~~~~~~~~~~~i~~~-~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L 789 (2114)
....+..++.. .+.+. ..+.|+||||+|++.++.++..|...++.
T Consensus 455 t~~eK~~al~~----~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~------------------------------ 500 (822)
T 3jux_A 455 TQKEKYEKIVE----EIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIP------------------------------ 500 (822)
T ss_dssp SHHHHHHHHHH----HHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCC------------------------------
T ss_pred cHHHHHHHHHH----HHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCC------------------------------
Confidence 12233333332 23222 34679999999999999999999876543
Q ss_pred hhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCC--------ceEEEEecceeccCCCCccccCCH
Q 000129 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLP--------AHTVIIKGTQIYNPEKGAWTELSP 861 (2114)
Q Consensus 790 ~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP--------~v~vVI~~~~~yd~~~g~~~~~s~ 861 (2114)
...+||+....+|..+...|+.| .|+|||++++||+|++ +..+||+ |+.+. |.
T Consensus 501 -------~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVIn----te~Pe------s~ 561 (822)
T 3jux_A 501 -------HQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIG----TERHE------SR 561 (822)
T ss_dssp -------CEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEE----SSCCS------SH
T ss_pred -------EEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEe----cCCCC------CH
Confidence 34569998777777788888777 6999999999999998 6678998 66554 78
Q ss_pred HHHHHhhcccCCCCCCCceEEEEEcCCCcH-------HHHHHh-----hcCCCcccchhhHhhHHH
Q 000129 862 LDIMQMLGRAGRPQYDSYGEGIIITGHSEL-------RYYLSL-----MNQQLPIESQFVSKLADQ 915 (2114)
Q Consensus 862 ~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~-------~~~~~l-----l~~~~pies~l~~~l~d~ 915 (2114)
..|.||+|||||.| .+|.++.+++..+. +.+..+ +....||++.+.++..++
T Consensus 562 r~y~qriGRTGRqG--~~G~a~~fvsleD~l~r~fg~~~~~~~m~~~~~~~~~~i~~~~v~~~ie~ 625 (822)
T 3jux_A 562 RIDNQLRGRAGRQG--DPGESIFFLSLEDDLLRIFGSEQIGKVMNILKIEEGQPIQHPMLSKLIEN 625 (822)
T ss_dssp HHHHHHHTTSSCSS--CCCEEEEEEETTSHHHHHTTHHHHHHHHHHSSCCSSSCBCCHHHHHHHHH
T ss_pred HHHHHhhCccccCC--CCeeEEEEechhHHHHHhhhHHHHHHHHHHcCCCCCceeccHHHHHHHHH
Confidence 89999999999988 78999988877652 122222 234578999887765543
No 119
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.89 E-value=9.9e-23 Score=241.30 Aligned_cols=182 Identities=20% Similarity=0.231 Sum_probs=144.5
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
+++++...+ .||..|+++|.++++.++.+ .+++++||||||||++|++++++.+.... .+.++||++|+
T Consensus 50 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~-~~~lv~a~TGsGKT~~~~~~il~~l~~~~--------~~~~~lil~Pt 120 (249)
T 3ber_A 50 VTDVLCEACDQLGWTKPTKIQIEAIPLALQG-RDIIGLAETGSGKTGAFALPILNALLETP--------QRLFALVLTPT 120 (249)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHHSC--------CSSCEEEECSS
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCC-CCEEEEcCCCCCchhHhHHHHHHHHhcCC--------CCceEEEEeCC
Confidence 577777777 78999999999999998876 55999999999999999999999887642 23579999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccc
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (2114)
++|+.|+++.++++....++++..++|+.....+. ...++|+|+||+++....+.... ..+..+++||+||||++.
T Consensus 121 r~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~-~~l~~~~~lViDEah~l~ 199 (249)
T 3ber_A 121 RELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKG-FNLRALKYLVMDEADRIL 199 (249)
T ss_dssp HHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTT-CCCTTCCEEEECSHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCC-cCccccCEEEEcChhhhh
Confidence 99999999999998888899999999987654332 35789999999998444333221 347789999999999987
Q ss_pred c-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhc
Q 000129 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV 682 (2114)
Q Consensus 637 d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~ 682 (2114)
+ .++..++.++. ..+...|+++||||+++ .+.++...
T Consensus 200 ~~~~~~~l~~i~~-------~~~~~~~~l~~SAT~~~--~v~~~~~~ 237 (249)
T 3ber_A 200 NMDFETEVDKILK-------VIPRDRKTFLFSATMTK--KVQKLQRA 237 (249)
T ss_dssp HTTCHHHHHHHHH-------SSCSSSEEEEEESSCCH--HHHHHHHH
T ss_pred ccChHHHHHHHHH-------hCCCCCeEEEEeccCCH--HHHHHHHH
Confidence 6 56666665543 23567899999999984 45444443
No 120
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.88 E-value=1.8e-22 Score=235.98 Aligned_cols=192 Identities=19% Similarity=0.221 Sum_probs=140.6
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
.+++.+...+ .||.+|+++|.++++.++.+ .+++++||||||||++|++|++..+...... .....+.++||++|
T Consensus 26 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~--~~~~~~~~~lil~P 102 (228)
T 3iuy_A 26 QQYPDLLKSIIRVGILKPTPIQSQAWPIILQG-IDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS--REQRNGPGMLVLTP 102 (228)
T ss_dssp TTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHC-----------CCCSEEEECS
T ss_pred ccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCChHHHHHHHHHHHHHHhccch--hhccCCCcEEEEeC
Confidence 3566666666 68999999999999998876 5599999999999999999999887543211 01124568999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChh---hhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccc
Q 000129 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~---~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l 635 (2114)
+++|+.|+++.+.+.. ..++++..++|+.....+ ...+++|+|+||+++..+.+... ..++++++|||||||++
T Consensus 103 t~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~--~~~~~~~~lViDEah~~ 179 (228)
T 3iuy_A 103 TRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNS--VNLRSITYLVIDEADKM 179 (228)
T ss_dssp SHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTC--CCCTTCCEEEECCHHHH
T ss_pred CHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC--cCcccceEEEEECHHHH
Confidence 9999999999998864 458889999998765533 23568999999999855444332 45788999999999998
Q ss_pred cc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCc
Q 000129 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKG 687 (2114)
Q Consensus 636 ~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~ 687 (2114)
.+ +++..++.++.+ ...+.|++++|||+|+ .+..+.......+
T Consensus 180 ~~~~~~~~~~~i~~~-------~~~~~~~l~~SAT~~~--~~~~~~~~~l~~p 223 (228)
T 3iuy_A 180 LDMEFEPQIRKILLD-------VRPDRQTVMTSATWPD--TVRQLALSYLKDP 223 (228)
T ss_dssp HHTTCHHHHHHHHHH-------SCSSCEEEEEESCCCH--HHHHHHHTTCSSC
T ss_pred hccchHHHHHHHHHh-------CCcCCeEEEEEeeCCH--HHHHHHHHHCCCC
Confidence 77 577777766543 3568899999999984 5556665443333
No 121
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.88 E-value=1.1e-22 Score=240.67 Aligned_cols=194 Identities=19% Similarity=0.293 Sum_probs=146.8
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
.+++++...+ .||..|+++|.++++.++.+. +++++||||||||++|++|++..+.... ..+.++||++|
T Consensus 35 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~-~~l~~a~TGsGKT~~~~l~~l~~l~~~~-------~~~~~~lil~P 106 (245)
T 3dkp_A 35 KINSRLLQNILDAGFQMPTPIQMQAIPVMLHGR-ELLASAPTGSGKTLAFSIPILMQLKQPA-------NKGFRALIISP 106 (245)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTC-CEEEECCTTSCHHHHHHHHHHHHHCSCC-------SSSCCEEEECS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-CEEEECCCCCcHHHHHHHHHHHHHhhcc-------cCCceEEEEeC
Confidence 5677777777 699999999999999988764 5999999999999999999999885432 13458999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEeCCCccCh----hhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccc
Q 000129 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR----QQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL 634 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~----~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~ 634 (2114)
+++|+.|+++.+.+++...++++..++|+..... .....++|+|+||+++..+.+.......++++++|||||||+
T Consensus 107 t~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~ 186 (245)
T 3dkp_A 107 TRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDK 186 (245)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHH
T ss_pred CHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHH
Confidence 9999999999999998888888888887643222 123578999999999865555543335678899999999999
Q ss_pred ccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCc
Q 000129 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKG 687 (2114)
Q Consensus 635 l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~ 687 (2114)
+.+ .++...+.+. +++. .....+.|+++||||+| .++..|+......+
T Consensus 187 ~~~~~~~~~~~~~~-~i~~--~~~~~~~~~~~~SAT~~--~~v~~~~~~~l~~p 235 (245)
T 3dkp_A 187 LFEDGKTGFRDQLA-SIFL--ACTSHKVRRAMFSATFA--YDVEQWCKLNLDNV 235 (245)
T ss_dssp HHHHC--CHHHHHH-HHHH--HCCCTTCEEEEEESSCC--HHHHHHHHHHSSSC
T ss_pred hcccccccHHHHHH-HHHH--hcCCCCcEEEEEeccCC--HHHHHHHHHhCCCC
Confidence 976 3222233222 2221 12345789999999998 57778887655443
No 122
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.88 E-value=1.2e-22 Score=235.88 Aligned_cols=188 Identities=21% Similarity=0.343 Sum_probs=145.4
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
+++++.+.+ .||.+|+++|.++++.++.+ .+++++||||||||++|++++++.+.... .+.++||++|+
T Consensus 11 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~~~~l~~l~~~~--------~~~~~lil~Pt 81 (219)
T 1q0u_A 11 FQPFIIEAIKTLRFYKPTEIQERIIPGALRG-ESMVGQSQTGTGKTHAYLLPIMEKIKPER--------AEVQAVITAPT 81 (219)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHHT-CCEEEECCSSHHHHHHHHHHHHHHCCTTS--------CSCCEEEECSS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCChHHHHHHHHHHHHHHhCc--------CCceEEEEcCc
Confidence 567777777 68999999999999998876 56999999999999999999998875431 24589999999
Q ss_pred HHHHHHHHHHHHHhhccC----CcEEEEEeCCCccChhh---hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecc
Q 000129 560 KALVAEVVGNLSNRLQMY----DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEI 632 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~----gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEa 632 (2114)
++|+.|+++.+.++.... ++++..++|+....... ...++|+|+||+++..+.+... ..+..+++||+|||
T Consensus 82 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~--~~~~~~~~lViDEa 159 (219)
T 1q0u_A 82 RELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQA--LDVHTAHILVVDEA 159 (219)
T ss_dssp HHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTC--CCGGGCCEEEECSH
T ss_pred HHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCC--CCcCcceEEEEcCc
Confidence 999999999999887765 78899999987654332 2368999999999854444322 45678999999999
Q ss_pred ccccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceE
Q 000129 633 HLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLF 689 (2114)
Q Consensus 633 H~l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~ 689 (2114)
|++.+ .++..++.++. ..+...|++++|||+|+ ++.+|+......+..
T Consensus 160 h~~~~~~~~~~l~~i~~-------~~~~~~~~l~~SAT~~~--~~~~~~~~~~~~p~~ 208 (219)
T 1q0u_A 160 DLMLDMGFITDVDQIAA-------RMPKDLQMLVFSATIPE--KLKPFLKKYMENPTF 208 (219)
T ss_dssp HHHHHTTCHHHHHHHHH-------TSCTTCEEEEEESCCCG--GGHHHHHHHCSSCEE
T ss_pred hHHhhhChHHHHHHHHH-------hCCcccEEEEEecCCCH--HHHHHHHHHcCCCeE
Confidence 99876 45555554433 23567899999999984 566666654444433
No 123
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.88 E-value=3.7e-22 Score=229.42 Aligned_cols=183 Identities=20% Similarity=0.299 Sum_probs=143.6
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
.|++++...+ .||.+|+++|.++++.++.+ .+++++||||||||++|++|++..+.... .+.++||++|
T Consensus 9 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~apTGsGKT~~~~~~~~~~~~~~~--------~~~~~lil~P 79 (206)
T 1vec_A 9 CLKRELLMGIFEMGWEKPSPIQEESIPIALSG-RDILARAKNGTGKSGAYLIPLLERLDLKK--------DNIQAMVIVP 79 (206)
T ss_dssp CCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTT-CCEEEECCSSSTTHHHHHHHHHHHCCTTS--------CSCCEEEECS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHccC-CCEEEECCCCCchHHHHHHHHHHHhcccC--------CCeeEEEEeC
Confidence 3567777776 68999999999999998876 56999999999999999999998865321 3458999999
Q ss_pred cHHHHHHHHHHHHHhhccC-CcEEEEEeCCCccChhh---hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccc
Q 000129 559 MKALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL 634 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~ 634 (2114)
+++|+.|+++.+.+.+... ++++..++|+....... ...++|+|+||+++....+... ..++++++||+||||+
T Consensus 80 t~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~lViDEah~ 157 (206)
T 1vec_A 80 TRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGV--AKVDHVQMIVLDEADK 157 (206)
T ss_dssp CHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC--SCCTTCCEEEEETHHH
T ss_pred cHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCC--cCcccCCEEEEEChHH
Confidence 9999999999999988766 78999999987755432 3568999999999844443322 4577899999999999
Q ss_pred ccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhcc
Q 000129 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN 683 (2114)
Q Consensus 635 l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~ 683 (2114)
+.+ .++..++.++.. .+...|++++|||+| .++.+++...
T Consensus 158 ~~~~~~~~~l~~i~~~-------~~~~~~~l~~SAT~~--~~~~~~~~~~ 198 (206)
T 1vec_A 158 LLSQDFVQIMEDIILT-------LPKNRQILLYSATFP--LSVQKFMNSH 198 (206)
T ss_dssp HTSTTTHHHHHHHHHH-------SCTTCEEEEEESCCC--HHHHHHHHHH
T ss_pred hHhhCcHHHHHHHHHh-------CCccceEEEEEeeCC--HHHHHHHHHH
Confidence 876 566665555433 345789999999998 4566665543
No 124
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.88 E-value=4e-22 Score=233.43 Aligned_cols=183 Identities=18% Similarity=0.253 Sum_probs=144.7
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
+++++...+ .||..|+++|.++++.++.+ .+++++||||||||++|+++++..+.... .+.++||++|+
T Consensus 31 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~l~~a~TGsGKT~~~~l~~l~~l~~~~--------~~~~~lil~Pt 101 (230)
T 2oxc_A 31 LSRPVLEGLRAAGFERPSPVQLKAIPLGRCG-LDLIVQAKSGTGKTCVFSTIALDSLVLEN--------LSTQILILAPT 101 (230)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHCCTTS--------CSCCEEEECSS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCCcHHHHHHHHHHHHHHhcC--------CCceEEEEeCC
Confidence 577777776 78999999999999998876 56999999999999999999998875431 24589999999
Q ss_pred HHHHHHHHHHHHHhhccC-CcEEEEEeCCCccChh--hhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccc
Q 000129 560 KALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQ--QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (2114)
++|+.|+++.+.++.... ++++..++|+...... ...+++|+|+||+++..+.+.. ...++++++||+||||++.
T Consensus 102 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~--~~~~~~~~~lViDEah~~~ 179 (230)
T 2oxc_A 102 REIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELD--YLNPGSIRLFILDEADKLL 179 (230)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTT--SSCGGGCCEEEESSHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcC--CcccccCCEEEeCCchHhh
Confidence 999999999999887654 8899999998765443 3457899999999985444432 2456889999999999997
Q ss_pred c-C-CchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccc
Q 000129 637 D-N-RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNL 684 (2114)
Q Consensus 637 d-~-rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~ 684 (2114)
+ + ++..++.++.+ .+...|++++|||+| .++.+++....
T Consensus 180 ~~~~~~~~~~~i~~~-------~~~~~~~l~lSAT~~--~~~~~~~~~~~ 220 (230)
T 2oxc_A 180 EEGSFQEQINWIYSS-------LPASKQMLAVSATYP--EFLANALTKYM 220 (230)
T ss_dssp STTSSHHHHHHHHHH-------SCSSCEEEEEESCCC--HHHHHHHTTTC
T ss_pred cCcchHHHHHHHHHh-------CCCCCeEEEEEeccC--HHHHHHHHHHc
Confidence 6 3 66666555443 345789999999987 45777776543
No 125
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.88 E-value=4.1e-22 Score=235.23 Aligned_cols=185 Identities=17% Similarity=0.219 Sum_probs=142.8
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc---CCCceEEEEEcccHHH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS---ETGVMRAVYIAPLEAL 1402 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~---~~~~~k~l~I~Ptr~L 1402 (2114)
+.......+.. ||..|+|+|.++++.++++ .+++++||||||||++|++|++..+.... ...++++||++||++|
T Consensus 36 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g-~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L 114 (242)
T 3fe2_A 36 FPANVMDVIARQNFTEPTAIQAQGWPVALSG-LDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTREL 114 (242)
T ss_dssp CCHHHHHHHHTTTCCSCCHHHHHHHHHHHHT-CCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHH
Confidence 44555556654 7999999999999999986 45999999999999999999999887531 1223489999999999
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEcCCcccch---hhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCC
Q 000129 1403 AKERYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479 (2114)
Q Consensus 1403 a~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~ 1479 (2114)
+.|+++.+++ +....++++..++|+..... .....++|+|+||+++..++++. ...+++++++|+||||++.+.
T Consensus 115 ~~Q~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~--~~~~~~~~~lViDEah~l~~~ 191 (242)
T 3fe2_A 115 AQQVQQVAAE-YCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECG--KTNLRRTTYLVLDEADRMLDM 191 (242)
T ss_dssp HHHHHHHHHH-HHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHT--SCCCTTCCEEEETTHHHHHHT
T ss_pred HHHHHHHHHH-HHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC--CCCcccccEEEEeCHHHHhhh
Confidence 9999999984 54445889999999876542 22345799999999998888763 346889999999999998765
Q ss_pred CCchHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHHHh
Q 000129 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWI 1521 (2114)
Q Consensus 1480 ~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~wl 1521 (2114)
+ +...+..+...++.+.|++++|||+++. .+++..+
T Consensus 192 ~------~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~ 228 (242)
T 3fe2_A 192 G------FEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDF 228 (242)
T ss_dssp T------CHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHH
T ss_pred C------cHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHH
Confidence 4 3334444555667789999999999763 3444443
No 126
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.88 E-value=4.2e-22 Score=236.85 Aligned_cols=192 Identities=17% Similarity=0.248 Sum_probs=143.6
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCC-CCCCCCcEEEEEcc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDG-SFNHSNYKIVYVAP 558 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g-~~~~~~~kil~iaP 558 (2114)
|++++..++ .||.+|+++|.++++.++.+ .+++++||||||||++|++|+++.+.......+ .....++++||++|
T Consensus 30 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~-~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~P 108 (253)
T 1wrb_A 30 LDPTIRNNILLASYQRPTPIQKNAIPAILEH-RDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAP 108 (253)
T ss_dssp CCCSTTTTTTTTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEEC
Confidence 455555555 58999999999999998876 559999999999999999999998875421100 01123468999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccc
Q 000129 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l 635 (2114)
+++|+.|+++.+.++....++++..++|+.....+. ...++|+|+||+++..+.+... ..++.+++||+||||++
T Consensus 109 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~--~~~~~~~~lViDEah~~ 186 (253)
T 1wrb_A 109 TRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNK--ISLEFCKYIVLDEADRM 186 (253)
T ss_dssp SHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTS--BCCTTCCEEEEETHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCC--CChhhCCEEEEeCHHHH
Confidence 999999999999998877789999999987655432 2468999999999844444332 45678999999999998
Q ss_pred cc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHh
Q 000129 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLR 681 (2114)
Q Consensus 636 ~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~ 681 (2114)
.+ .++..+..++.++. .......|+++||||+|+ ++..+..
T Consensus 187 ~~~~~~~~~~~i~~~~~---~~~~~~~q~l~~SAT~~~--~~~~~~~ 228 (253)
T 1wrb_A 187 LDMGFEPQIRKIIEESN---MPSGINRQTLMFSATFPK--EIQKLAA 228 (253)
T ss_dssp HHTTCHHHHHHHHHSSC---CCCGGGCEEEEEESSCCH--HHHHHHH
T ss_pred HhCchHHHHHHHHhhcc---CCCCCCcEEEEEEEeCCH--HHHHHHH
Confidence 76 57777776665320 001126789999999874 4444444
No 127
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.88 E-value=6.5e-22 Score=232.58 Aligned_cols=186 Identities=17% Similarity=0.257 Sum_probs=143.1
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
+++++...+ .||..|+++|.++++.++.+ ++++++||||||||++|++|+++.+...... ...+.++||++|+
T Consensus 32 l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~-~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~----~~~~~~~lil~Pt 106 (236)
T 2pl3_A 32 LSKKTLKGLQEAQYRLVTEIQKQTIGLALQG-KDVLGAAKTGSGKTLAFLVPVLEALYRLQWT----STDGLGVLIISPT 106 (236)
T ss_dssp CCHHHHHHHHHTTCCBCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHHTTCC----GGGCCCEEEECSS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEEeCCCCcHHHHHHHHHHHHHHhhccc----ccCCceEEEEeCC
Confidence 567777776 68999999999999998876 5599999999999999999999988653211 1234589999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCccChh--hhccceEEEcCHhHH-HHHHhccCCCcccccccEEEEecccccc
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (2114)
++|+.|+++.+.+++...++++..++|+...... ...+++|+|+||+++ +.+.+.. ...+.++++||+||||++.
T Consensus 107 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~--~~~~~~~~~lViDEah~~~ 184 (236)
T 2pl3_A 107 RELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETV--SFHATDLQMLVLDEADRIL 184 (236)
T ss_dssp HHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCS--SCCCTTCCEEEETTHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcC--CcccccccEEEEeChHHHh
Confidence 9999999999999888788999999998765443 346789999999998 4444332 1346789999999999987
Q ss_pred c-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhcc
Q 000129 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN 683 (2114)
Q Consensus 637 d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~ 683 (2114)
+ .++..+..++.+ .+...|+++||||+|+ .+..+....
T Consensus 185 ~~~~~~~~~~i~~~-------~~~~~~~l~~SAT~~~--~~~~~~~~~ 223 (236)
T 2pl3_A 185 DMGFADTMNAVIEN-------LPKKRQTLLFSATQTK--SVKDLARLS 223 (236)
T ss_dssp HTTTHHHHHHHHHT-------SCTTSEEEEEESSCCH--HHHHHHHHS
T ss_pred cCCcHHHHHHHHHh-------CCCCCeEEEEEeeCCH--HHHHHHHHh
Confidence 6 466665555433 3567899999999984 444444433
No 128
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.87 E-value=1.5e-21 Score=224.36 Aligned_cols=176 Identities=21% Similarity=0.305 Sum_probs=136.5
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q 1405 (2114)
|.....+.+.. ||..|+|+|.++++.++++ .+++++||||||||++|.+|++..+.....+ +++||++|+++|+.|
T Consensus 10 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~--~~~lil~Pt~~L~~q 86 (206)
T 1vec_A 10 LKRELLMGIFEMGWEKPSPIQEESIPIALSG-RDILARAKNGTGKSGAYLIPLLERLDLKKDN--IQAMVIVPTRELALQ 86 (206)
T ss_dssp CCHHHHHHHHTTTCCSCCHHHHHHHHHHHTT-CCEEEECCSSSTTHHHHHHHHHHHCCTTSCS--CCEEEECSCHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHccC-CCEEEECCCCCchHHHHHHHHHHHhcccCCC--eeEEEEeCcHHHHHH
Confidence 44555666655 7999999999999999875 5599999999999999999999887653233 389999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcccch---hhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCc
Q 000129 1406 RYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP 1482 (2114)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~l~G~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~ 1482 (2114)
+++.+++......+.++..++|+..... .....++|+|+||+++..++.+ ....+.+++++|+||||++.+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~lViDEah~~~~~~-- 162 (206)
T 1vec_A 87 VSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKK--GVAKVDHVQMIVLDEADKLLSQD-- 162 (206)
T ss_dssp HHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT--TCSCCTTCCEEEEETHHHHTSTT--
T ss_pred HHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHc--CCcCcccCCEEEEEChHHhHhhC--
Confidence 9999985433323788999999876542 2234569999999999887765 23457889999999999887643
Q ss_pred hHHHHHHHHHHHHhhcCCCceEEEEcccCCC
Q 000129 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (2114)
Q Consensus 1483 ~le~i~srl~~i~~~~~~~~riV~lSATl~n 1513 (2114)
+...+..+...++.+.|++++|||+++
T Consensus 163 ----~~~~l~~i~~~~~~~~~~l~~SAT~~~ 189 (206)
T 1vec_A 163 ----FVQIMEDIILTLPKNRQILLYSATFPL 189 (206)
T ss_dssp ----THHHHHHHHHHSCTTCEEEEEESCCCH
T ss_pred ----cHHHHHHHHHhCCccceEEEEEeeCCH
Confidence 223334444455668999999999975
No 129
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.87 E-value=9.2e-22 Score=230.04 Aligned_cols=181 Identities=19% Similarity=0.290 Sum_probs=132.3
Q ss_pred ChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc----CCCceEEEEEcccHHH
Q 000129 1328 RNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS----ETGVMRAVYIAPLEAL 1402 (2114)
Q Consensus 1328 ~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~----~~~~~k~l~I~Ptr~L 1402 (2114)
.....+.+.. ||..|+|+|.++++.++++ ++++++||||||||++|++|++..+.... ...++++||++|+++|
T Consensus 28 ~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L 106 (228)
T 3iuy_A 28 YPDLLKSIIRVGILKPTPIQSQAWPIILQG-IDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTREL 106 (228)
T ss_dssp CHHHHHHHHHHTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHH
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHH
Confidence 3344555544 7999999999999999875 55999999999999999999998876421 1123489999999999
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEcCCcccch---hhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCC
Q 000129 1403 AKERYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479 (2114)
Q Consensus 1403 a~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~ 1479 (2114)
+.|+++.++ .+.. .+.++..++|+..... .....++|+|+||+++..++.+ ....++++++||+||||++.+.
T Consensus 107 ~~q~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~--~~~~~~~~~~lViDEah~~~~~ 182 (228)
T 3iuy_A 107 ALHVEAECS-KYSY-KGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMN--NSVNLRSITYLVIDEADKMLDM 182 (228)
T ss_dssp HHHHHHHHH-HHCC-TTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHT--TCCCCTTCCEEEECCHHHHHHT
T ss_pred HHHHHHHHH-Hhcc-cCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc--CCcCcccceEEEEECHHHHhcc
Confidence 999999998 4553 3788888888766542 2334569999999999887765 3345889999999999988765
Q ss_pred CCchHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHH
Q 000129 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGE 1519 (2114)
Q Consensus 1480 ~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~ 1519 (2114)
. +...+..+...++.+.|++++|||+++. .+++.
T Consensus 183 ~------~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~ 217 (228)
T 3iuy_A 183 E------FEPQIRKILLDVRPDRQTVMTSATWPDTVRQLAL 217 (228)
T ss_dssp T------CHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHH
T ss_pred c------hHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHH
Confidence 3 2233333344456789999999999763 33443
No 130
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.87 E-value=1.3e-21 Score=229.16 Aligned_cols=183 Identities=21% Similarity=0.296 Sum_probs=140.0
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q 1405 (2114)
+.....+.+.. ||..|+|+|.++++.++++ .|++++||||||||++|.+|++..+.....+ .++||++|+++|+.|
T Consensus 31 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~--~~~lil~Pt~~L~~q 107 (230)
T 2oxc_A 31 LSRPVLEGLRAAGFERPSPVQLKAIPLGRCG-LDLIVQAKSGTGKTCVFSTIALDSLVLENLS--TQILILAPTREIAVQ 107 (230)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHCCTTSCS--CCEEEECSSHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCCcHHHHHHHHHHHHHHhcCCC--ceEEEEeCCHHHHHH
Confidence 44445555544 7999999999999999875 5699999999999999999999988653333 389999999999999
Q ss_pred HHHHHHHHhcCC-CCcEEEEEcCCcccc--hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCc
Q 000129 1406 RYRDWEIKFGQG-LGMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP 1482 (2114)
Q Consensus 1406 ~~~~~~~~f~~~-~g~~v~~l~G~~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~ 1482 (2114)
+++.+++ +... .++++..++|+.... ...+..++|+|+||+++..++++ ....+.+++++|+||||++.+.+ .
T Consensus 108 ~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~--~~~~~~~~~~lViDEah~~~~~~-~ 183 (230)
T 2oxc_A 108 IHSVITA-IGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIEL--DYLNPGSIRLFILDEADKLLEEG-S 183 (230)
T ss_dssp HHHHHHH-HTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHT--TSSCGGGCCEEEESSHHHHHSTT-S
T ss_pred HHHHHHH-HhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhc--CCcccccCCEEEeCCchHhhcCc-c
Confidence 9999984 5443 478999999987654 34456789999999999888765 33457899999999999987643 1
Q ss_pred hHHHHHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhc
Q 000129 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIG 1522 (2114)
Q Consensus 1483 ~le~i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~ 1522 (2114)
. ...+..+...++...|++++|||+++. +.+++.
T Consensus 184 ~----~~~~~~i~~~~~~~~~~l~lSAT~~~~--~~~~~~ 217 (230)
T 2oxc_A 184 F----QEQINWIYSSLPASKQMLAVSATYPEF--LANALT 217 (230)
T ss_dssp S----HHHHHHHHHHSCSSCEEEEEESCCCHH--HHHHHT
T ss_pred h----HHHHHHHHHhCCCCCeEEEEEeccCHH--HHHHHH
Confidence 1 122333344456688999999998743 444443
No 131
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.87 E-value=1.5e-21 Score=227.65 Aligned_cols=179 Identities=23% Similarity=0.320 Sum_probs=137.3
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
+++++...+ .||..|+++|.++++.++.+ .+++++||||||||++|++++++.+.... .+.++||++|+
T Consensus 21 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~~pTGsGKT~~~~~~~l~~l~~~~--------~~~~~lil~Pt 91 (224)
T 1qde_A 21 LDENLLRGVFGYGFEEPSAIQQRAIMPIIEG-HDVLAQAQSGTGKTGTFSIAALQRIDTSV--------KAPQALMLAPT 91 (224)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHCCTTC--------CSCCEEEECSS
T ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC-CCEEEECCCCCcHHHHHHHHHHHHHhccC--------CCceEEEEECC
Confidence 677777776 58999999999999998876 56999999999999999999999875432 24589999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCccChh--hhccceEEEcCHhHH-HHHHhccCCCcccccccEEEEecccccc
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (2114)
++|+.|+++.+.+++...++++..++|+...... ....++|+|+||+++ +.+.+.. ..++++++||+||||++.
T Consensus 92 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~---~~~~~~~~iViDEah~~~ 168 (224)
T 1qde_A 92 RELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRR---FRTDKIKMFILDEADEML 168 (224)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTS---SCCTTCCEEEEETHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCC---cchhhCcEEEEcChhHHh
Confidence 9999999999999888889999999998765443 234589999999997 4444432 456789999999999987
Q ss_pred c-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHh
Q 000129 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLR 681 (2114)
Q Consensus 637 d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~ 681 (2114)
+ .++..+..++.. .+...|+++||||+|+ ++..++.
T Consensus 169 ~~~~~~~l~~i~~~-------~~~~~~~i~lSAT~~~--~~~~~~~ 205 (224)
T 1qde_A 169 SSGFKEQIYQIFTL-------LPPTTQVVLLSATMPN--DVLEVTT 205 (224)
T ss_dssp HTTCHHHHHHHHHH-------SCTTCEEEEEESSCCH--HHHHHHH
T ss_pred hhhhHHHHHHHHHh-------CCccCeEEEEEeecCH--HHHHHHH
Confidence 6 465555544432 3568899999999985 3444443
No 132
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.87 E-value=1.7e-21 Score=227.02 Aligned_cols=181 Identities=22% Similarity=0.324 Sum_probs=136.5
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q 1405 (2114)
+.....+.+.. ||..|+|+|.++++.++++ .+++++||||||||++|.+|+++.+.....+ .++||++|+++|+.|
T Consensus 21 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~--~~~lil~Pt~~L~~q 97 (224)
T 1qde_A 21 LDENLLRGVFGYGFEEPSAIQQRAIMPIIEG-HDVLAQAQSGTGKTGTFSIAALQRIDTSVKA--PQALMLAPTRELALQ 97 (224)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHCCTTCCS--CCEEEECSSHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC-CCEEEECCCCCcHHHHHHHHHHHHHhccCCC--ceEEEEECCHHHHHH
Confidence 44455555554 7999999999999999875 5599999999999999999999988663333 389999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcccc--hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCch
Q 000129 1406 RYRDWEIKFGQGLGMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483 (2114)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~l~G~~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~ 1483 (2114)
+++.++ .+....++++..++|+.... ...+..++|+|+||+++..++.+ ....+.++++||+||||++.+..
T Consensus 98 ~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~--~~~~~~~~~~iViDEah~~~~~~--- 171 (224)
T 1qde_A 98 IQKVVM-ALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQR--RRFRTDKIKMFILDEADEMLSSG--- 171 (224)
T ss_dssp HHHHHH-HHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEETHHHHHHTT---
T ss_pred HHHHHH-HHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHh--CCcchhhCcEEEEcChhHHhhhh---
Confidence 999998 46555688999999987643 33455689999999998877765 24457889999999999887543
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHH
Q 000129 1484 LEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGE 1519 (2114)
Q Consensus 1484 le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~ 1519 (2114)
+...+..+...++.+.|++++|||+++. .++..
T Consensus 172 ---~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~ 205 (224)
T 1qde_A 172 ---FKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTT 205 (224)
T ss_dssp ---CHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHH
T ss_pred ---hHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHH
Confidence 2233334444456789999999999873 34444
No 133
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.87 E-value=1.6e-21 Score=226.42 Aligned_cols=175 Identities=21% Similarity=0.304 Sum_probs=136.2
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q 1405 (2114)
+.....+.+.. ||..|+|+|.++++.++++ .+++++||||||||++|.+|+++.+.....+ .++||++|+++|+.|
T Consensus 11 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~--~~~lil~Pt~~L~~q 87 (219)
T 1q0u_A 11 FQPFIIEAIKTLRFYKPTEIQERIIPGALRG-ESMVGQSQTGTGKTHAYLLPIMEKIKPERAE--VQAVITAPTRELATQ 87 (219)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHHT-CCEEEECCSSHHHHHHHHHHHHHHCCTTSCS--CCEEEECSSHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCChHHHHHHHHHHHHHHhCcCC--ceEEEEcCcHHHHHH
Confidence 33444555544 7999999999999999986 5599999999999999999999988763223 389999999999999
Q ss_pred HHHHHHHHhcCCC----CcEEEEEcCCcccchh--hc-cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC
Q 000129 1406 RYRDWEIKFGQGL----GMRVVELTGETAMDLK--LL-EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (2114)
Q Consensus 1406 ~~~~~~~~f~~~~----g~~v~~l~G~~~~~~~--~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~ 1478 (2114)
+++.+++ +.... +.++..++|+...... .+ ..++|+|+||+++..++++ ....+.+++++|+||||.+.+
T Consensus 88 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~~~lViDEah~~~~ 164 (219)
T 1q0u_A 88 IYHETLK-ITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIRE--QALDVHTAHILVVDEADLMLD 164 (219)
T ss_dssp HHHHHHH-HHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHT--TCCCGGGCCEEEECSHHHHHH
T ss_pred HHHHHHH-HhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHc--CCCCcCcceEEEEcCchHHhh
Confidence 9999985 44433 6788888988765422 22 3569999999999887765 234578899999999999875
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCC
Q 000129 1479 QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (2114)
Q Consensus 1479 ~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n 1513 (2114)
.+ +...+..+...++.+.|++++|||+++
T Consensus 165 ~~------~~~~l~~i~~~~~~~~~~l~~SAT~~~ 193 (219)
T 1q0u_A 165 MG------FITDVDQIAARMPKDLQMLVFSATIPE 193 (219)
T ss_dssp TT------CHHHHHHHHHTSCTTCEEEEEESCCCG
T ss_pred hC------hHHHHHHHHHhCCcccEEEEEecCCCH
Confidence 43 234444555566778999999999976
No 134
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.87 E-value=8.6e-22 Score=232.96 Aligned_cols=188 Identities=24% Similarity=0.367 Sum_probs=139.7
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q 1405 (2114)
+.....+.+.. ||..|+|+|.++++.+++++ +++++||||||||++|++|++..+... ...++++||++|+++|+.|
T Consensus 36 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~-~~l~~a~TGsGKT~~~~l~~l~~l~~~-~~~~~~~lil~Pt~~L~~q 113 (245)
T 3dkp_A 36 INSRLLQNILDAGFQMPTPIQMQAIPVMLHGR-ELLASAPTGSGKTLAFSIPILMQLKQP-ANKGFRALIISPTRELASQ 113 (245)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTC-CEEEECCTTSCHHHHHHHHHHHHHCSC-CSSSCCEEEECSSHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-CEEEECCCCCcHHHHHHHHHHHHHhhc-ccCCceEEEEeCCHHHHHH
Confidence 44555666654 79999999999999999864 599999999999999999999988752 2233489999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcccch----hhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCC-
Q 000129 1406 RYRDWEIKFGQGLGMRVVELTGETAMDL----KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG- 1480 (2114)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~l~G~~~~~~----~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~- 1480 (2114)
+++.+++ +....+.++..++|+..... .....++|+|+||+++..++++......+.++++||+||||++.++.
T Consensus 114 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~ 192 (245)
T 3dkp_A 114 IHRELIK-ISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGK 192 (245)
T ss_dssp HHHHHHH-HTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC-
T ss_pred HHHHHHH-HhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhccccc
Confidence 9999994 55555788887777544321 12345699999999999988875444568899999999999987643
Q ss_pred CchHHHHHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhc
Q 000129 1481 GPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIG 1522 (2114)
Q Consensus 1481 g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~ 1522 (2114)
+...+.+...++. ..+.+.|+++||||+++ ++.+|+.
T Consensus 193 ~~~~~~~~~i~~~---~~~~~~~~~~~SAT~~~--~v~~~~~ 229 (245)
T 3dkp_A 193 TGFRDQLASIFLA---CTSHKVRRAMFSATFAY--DVEQWCK 229 (245)
T ss_dssp -CHHHHHHHHHHH---CCCTTCEEEEEESSCCH--HHHHHHH
T ss_pred ccHHHHHHHHHHh---cCCCCcEEEEEeccCCH--HHHHHHH
Confidence 2233333322222 22457899999999965 3444443
No 135
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.87 E-value=1.2e-21 Score=231.95 Aligned_cols=184 Identities=21% Similarity=0.272 Sum_probs=141.2
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q 1405 (2114)
+.....+.+.. ||..|+++|.++++.++++ ++++++||||||||++|.+|+++.+.....+ +++||++|+++|+.|
T Consensus 50 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~-~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~--~~~lil~Ptr~L~~q 126 (249)
T 3ber_A 50 VTDVLCEACDQLGWTKPTKIQIEAIPLALQG-RDIIGLAETGSGKTGAFALPILNALLETPQR--LFALVLTPTRELAFQ 126 (249)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHHSCCS--SCEEEECSSHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCC-CCEEEEcCCCCCchhHhHHHHHHHHhcCCCC--ceEEEEeCCHHHHHH
Confidence 44445555544 7999999999999999985 5599999999999999999999988773333 389999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcccch---hhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCc
Q 000129 1406 RYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP 1482 (2114)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~l~G~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~ 1482 (2114)
+++.++ .+....++++..++|+..... .....++|+|+||+++..++++.. ...+.++++||+||||++.+..
T Consensus 127 ~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~-~~~l~~~~~lViDEah~l~~~~-- 202 (249)
T 3ber_A 127 ISEQFE-ALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTK-GFNLRALKYLVMDEADRILNMD-- 202 (249)
T ss_dssp HHHHHH-HHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHST-TCCCTTCCEEEECSHHHHHHTT--
T ss_pred HHHHHH-HHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC-CcCccccCEEEEcChhhhhccC--
Confidence 999998 455555888999999876432 233567999999999988776532 2357889999999999887643
Q ss_pred hHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHHHh
Q 000129 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWI 1521 (2114)
Q Consensus 1483 ~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~wl 1521 (2114)
+...+..+...++.+.|+++||||+++. .+++.++
T Consensus 203 ----~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~ 238 (249)
T 3ber_A 203 ----FETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAA 238 (249)
T ss_dssp ----CHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHH
T ss_pred ----hHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHH
Confidence 2233444445566789999999999763 3455543
No 136
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.87 E-value=1.1e-21 Score=230.81 Aligned_cols=179 Identities=21% Similarity=0.330 Sum_probs=136.1
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
|++++.+.+ .||..|+++|.++++.++.+ .+++++||||||||++|++++++.+.... .+.++||++|+
T Consensus 37 l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~-~~~li~apTGsGKT~~~~l~~l~~l~~~~--------~~~~~lil~Pt 107 (237)
T 3bor_A 37 LKESLLRGIYAYGFEKPSAIQQRAIIPCIKG-YDVIAQAQSGTGKTATFAISILQQLEIEF--------KETQALVLAPT 107 (237)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHTT-CCEEECCCSSHHHHHHHHHHHHHHCCTTS--------CSCCEEEECSS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCCcHHHHHHHHHHHHHHhcC--------CCceEEEEECc
Confidence 577777766 68999999999999998876 55999999999999999999998875321 24589999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh----hccceEEEcCHhHH-HHHHhccCCCcccccccEEEEecccc
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ----IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~----~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~ 634 (2114)
++|+.|+++.++++....++.+..++|+.....+. ...++|+|+||+++ +.+.+.. ..+..+++||+||||+
T Consensus 108 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~---~~~~~~~~lViDEah~ 184 (237)
T 3bor_A 108 RELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRY---LSPKWIKMFVLDEADE 184 (237)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTS---SCSTTCCEEEEESHHH
T ss_pred HHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCC---cCcccCcEEEECCchH
Confidence 99999999999998877788999999987654332 12389999999997 5554433 3467799999999999
Q ss_pred ccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHh
Q 000129 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLR 681 (2114)
Q Consensus 635 l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~ 681 (2114)
+.+ .++..+..++.+ .+...|++++|||+|+ ++.+++.
T Consensus 185 ~~~~~~~~~l~~i~~~-------~~~~~~~i~~SAT~~~--~~~~~~~ 223 (237)
T 3bor_A 185 MLSRGFKDQIYEIFQK-------LNTSIQVVLLSATMPT--DVLEVTK 223 (237)
T ss_dssp HHHTTCHHHHHHHHHH-------SCTTCEEEEECSSCCH--HHHHHHH
T ss_pred hhccCcHHHHHHHHHh-------CCCCCeEEEEEEecCH--HHHHHHH
Confidence 876 465555554433 3567899999999984 3444443
No 137
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.86 E-value=3.9e-21 Score=228.43 Aligned_cols=176 Identities=16% Similarity=0.290 Sum_probs=132.8
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc-------CCCceEEEEEcccHHHHHHHHHH
Q 000129 1337 QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-------ETGVMRAVYIAPLEALAKERYRD 1409 (2114)
Q Consensus 1337 ~gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~-------~~~~~k~l~I~Ptr~La~q~~~~ 1409 (2114)
.||..|+|+|.++++.++++ .+++++||||||||++|++|+++.+.... ...++++||++|+++|+.|+++.
T Consensus 41 ~g~~~~~~~Q~~~i~~i~~~-~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 119 (253)
T 1wrb_A 41 ASYQRPTPIQKNAIPAILEH-RDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSE 119 (253)
T ss_dssp TTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCC-CCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHH
Confidence 37999999999999999885 55999999999999999999999887532 11224899999999999999999
Q ss_pred HHHHhcCCCCcEEEEEcCCcccch--h-hccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCC-CchHH
Q 000129 1410 WEIKFGQGLGMRVVELTGETAMDL--K-LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLE 1485 (2114)
Q Consensus 1410 ~~~~f~~~~g~~v~~l~G~~~~~~--~-~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~-g~~le 1485 (2114)
++ .+....++++..++|+..... + ....++|+|+||+++..++++. ...+.+++++|+||||++.+.. +..++
T Consensus 120 ~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~--~~~~~~~~~lViDEah~~~~~~~~~~~~ 196 (253)
T 1wrb_A 120 SQ-KFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKN--KISLEFCKYIVLDEADRMLDMGFEPQIR 196 (253)
T ss_dssp HH-HHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTT--SBCCTTCCEEEEETHHHHHHTTCHHHHH
T ss_pred HH-HHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcC--CCChhhCCEEEEeCHHHHHhCchHHHHH
Confidence 98 465556788888998876542 2 2245699999999998887763 3457889999999999887653 33333
Q ss_pred HHHHHHHHHHhhcCC--CceEEEEcccCCCh-hHHHHHh
Q 000129 1486 VIVSRMRYIASQVEN--KIRIVALSTSLANA-KDLGEWI 1521 (2114)
Q Consensus 1486 ~i~srl~~i~~~~~~--~~riV~lSATl~n~-~dla~wl 1521 (2114)
.++.++ ..+. +.|++++|||+++. .+++..+
T Consensus 197 ~i~~~~-----~~~~~~~~q~l~~SAT~~~~~~~~~~~~ 230 (253)
T 1wrb_A 197 KIIEES-----NMPSGINRQTLMFSATFPKEIQKLAADF 230 (253)
T ss_dssp HHHHSS-----CCCCGGGCEEEEEESSCCHHHHHHHHHH
T ss_pred HHHhhc-----cCCCCCCcEEEEEEEeCCHHHHHHHHHH
Confidence 332211 1222 68999999999763 3444433
No 138
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.86 E-value=3.2e-21 Score=226.76 Aligned_cols=181 Identities=21% Similarity=0.357 Sum_probs=133.6
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q 1405 (2114)
|.....+.+.. ||..|+|+|.++++.++++ .+++++||||||||++|.+++++.+.....+ .++||++|+++|+.|
T Consensus 37 l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~-~~~li~apTGsGKT~~~~l~~l~~l~~~~~~--~~~lil~Pt~~L~~q 113 (237)
T 3bor_A 37 LKESLLRGIYAYGFEKPSAIQQRAIIPCIKG-YDVIAQAQSGTGKTATFAISILQQLEIEFKE--TQALVLAPTRELAQQ 113 (237)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHTT-CCEEECCCSSHHHHHHHHHHHHHHCCTTSCS--CCEEEECSSHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCCcHHHHHHHHHHHHHHhcCCC--ceEEEEECcHHHHHH
Confidence 44555566654 7999999999999999985 5599999999999999999999988653233 389999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcccc--hhhcc-C-CcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCC
Q 000129 1406 RYRDWEIKFGQGLGMRVVELTGETAMD--LKLLE-K-GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2114)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~l~G~~~~~--~~~l~-~-~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g 1481 (2114)
+++.++ .++...+..+..+.|+.... ...+. . ++|+|+||+++..++.+ ....+.++++||+||||.+.+..
T Consensus 114 ~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~--~~~~~~~~~~lViDEah~~~~~~- 189 (237)
T 3bor_A 114 IQKVIL-ALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNR--RYLSPKWIKMFVLDEADEMLSRG- 189 (237)
T ss_dssp HHHHHH-HHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHT--TSSCSTTCCEEEEESHHHHHHTT-
T ss_pred HHHHHH-HHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHh--CCcCcccCcEEEECCchHhhccC-
Confidence 999998 56665678888888876543 22222 2 69999999998877765 23457889999999999886543
Q ss_pred chHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHH
Q 000129 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGE 1519 (2114)
Q Consensus 1482 ~~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~ 1519 (2114)
+...+..+...++.+.|++++|||+++. .+++.
T Consensus 190 -----~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~ 223 (237)
T 3bor_A 190 -----FKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTK 223 (237)
T ss_dssp -----CHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHH
T ss_pred -----cHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHH
Confidence 1222333444456789999999999753 34444
No 139
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.86 E-value=6.4e-21 Score=224.12 Aligned_cols=186 Identities=20% Similarity=0.279 Sum_probs=140.7
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc--CCCceEEEEEcccHHHH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS--ETGVMRAVYIAPLEALA 1403 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~--~~~~~k~l~I~Ptr~La 1403 (2114)
+.....+.+.. ||..|+|+|.++++.++++ ++++++||||||||++|++|+++.+.... ...+.++||++|+++|+
T Consensus 32 l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~-~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~ 110 (236)
T 2pl3_A 32 LSKKTLKGLQEAQYRLVTEIQKQTIGLALQG-KDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELA 110 (236)
T ss_dssp CCHHHHHHHHHTTCCBCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHH
Confidence 44455555544 7999999999999999875 55999999999999999999998876421 11233899999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEcCCcccc--hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCC
Q 000129 1404 KERYRDWEIKFGQGLGMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2114)
Q Consensus 1404 ~q~~~~~~~~f~~~~g~~v~~l~G~~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g 1481 (2114)
.|+++.++ .++...++++..++|+.... ...+..++|+|+||+++..++.+. ....+.+++++|+||||++.+..
T Consensus 111 ~q~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~-~~~~~~~~~~lViDEah~~~~~~- 187 (236)
T 2pl3_A 111 YQTFEVLR-KVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDET-VSFHATDLQMLVLDEADRILDMG- 187 (236)
T ss_dssp HHHHHHHH-HHTTTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHC-SSCCCTTCCEEEETTHHHHHHTT-
T ss_pred HHHHHHHH-HHhCCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhc-CCcccccccEEEEeChHHHhcCC-
Confidence 99999998 56655678999999987654 344567899999999998776652 12357789999999999887543
Q ss_pred chHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHHHh
Q 000129 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWI 1521 (2114)
Q Consensus 1482 ~~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~wl 1521 (2114)
+...+..+...++.+.|++++|||+++. .+++..+
T Consensus 188 -----~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~ 223 (236)
T 2pl3_A 188 -----FADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLS 223 (236)
T ss_dssp -----THHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHS
T ss_pred -----cHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHh
Confidence 2234444555567789999999999763 3555543
No 140
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.86 E-value=5e-21 Score=222.47 Aligned_cols=184 Identities=21% Similarity=0.324 Sum_probs=141.8
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHH
Q 000129 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (2114)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~ 1404 (2114)
.|.....+.+.. ||..|+|+|.++++.++++ .++++++|||||||++|.++++..+.... +++++||++|+++|+.
T Consensus 20 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~li~~~TGsGKT~~~~~~~~~~~~~~~--~~~~~lil~Pt~~L~~ 96 (220)
T 1t6n_A 20 LLKPELLRAIVDCGFEHPSEVQHECIPQAILG-MDVLCQAKSGMGKTAVFVLATLQQLEPVT--GQVSVLVMCHTRELAF 96 (220)
T ss_dssp CCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHCCCCT--TCCCEEEECSCHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCCchhhhhhHHHHHhhhccC--CCEEEEEEeCCHHHHH
Confidence 345556666654 7999999999999999986 45999999999999999999998876532 2348999999999999
Q ss_pred HHHHHHHHHhcCCC-CcEEEEEcCCcccc--hhhcc--CCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCC
Q 000129 1405 ERYRDWEIKFGQGL-GMRVVELTGETAMD--LKLLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479 (2114)
Q Consensus 1405 q~~~~~~~~f~~~~-g~~v~~l~G~~~~~--~~~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~ 1479 (2114)
|+++.++ ++.... +.++..++|+.... .+.+. ..+|+|+||+++..++++ ....+.+++++|+||||++.++
T Consensus 97 q~~~~~~-~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~lViDEah~~~~~ 173 (220)
T 1t6n_A 97 QISKEYE-RFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN--KSLNLKHIKHFILDECDKMLEQ 173 (220)
T ss_dssp HHHHHHH-HHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEESHHHHHSS
T ss_pred HHHHHHH-HHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHh--CCCCcccCCEEEEcCHHHHhcc
Confidence 9999998 455443 78999999987643 22222 359999999999888876 2345789999999999988754
Q ss_pred CCchHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHHH
Q 000129 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEW 1520 (2114)
Q Consensus 1480 ~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~w 1520 (2114)
.+ +...+..+....+.+.|++++|||+++. .++++.
T Consensus 174 ~~-----~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~ 210 (220)
T 1t6n_A 174 LD-----MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRK 210 (220)
T ss_dssp HH-----HHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHT
T ss_pred cC-----cHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHH
Confidence 21 3344455555567789999999999873 455543
No 141
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.86 E-value=4.4e-21 Score=220.56 Aligned_cols=174 Identities=22% Similarity=0.275 Sum_probs=136.3
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
+++++...+ .||..|+++|.++++.++.+ .+++++||||||||++|+++++..+..... ...+.+++|++|+
T Consensus 8 l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~-~~~li~~~TGsGKT~~~~~~~~~~l~~~~~-----~~~~~~~lil~P~ 81 (207)
T 2gxq_A 8 LKPEILEALHGRGLTTPTPIQAAALPLALEG-KDLIGQARTGTGKTLAFALPIAERLAPSQE-----RGRKPRALVLTPT 81 (207)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHCCCCCC-----TTCCCSEEEECSS
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHcCC-CCEEEECCCCChHHHHHHHHHHHHHhhccc-----cCCCCcEEEEECC
Confidence 567777776 68999999999999998876 559999999999999999999998754221 1234689999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCccChh---hhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccc
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~---~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (2114)
++|+.|+++.+.+.+.. +++..++|+...... ....++|+|+||+++..+.+.. ...++++++||+||||++.
T Consensus 82 ~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~--~~~~~~~~~iViDEah~~~ 157 (207)
T 2gxq_A 82 RELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQG--VLDLSRVEVAVLDEADEML 157 (207)
T ss_dssp HHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHT--SSCCTTCSEEEEESHHHHH
T ss_pred HHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcC--CcchhhceEEEEEChhHhh
Confidence 99999999999987654 678888888765432 2357899999999984444332 2457789999999999987
Q ss_pred c-CCchhHHHHHHHHHHHHhhccccccEEEEccccCC
Q 000129 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN 672 (2114)
Q Consensus 637 d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn 672 (2114)
+ .++..++.++. ..+...|++++|||+|+
T Consensus 158 ~~~~~~~~~~i~~-------~~~~~~~~i~~SAT~~~ 187 (207)
T 2gxq_A 158 SMGFEEEVEALLS-------ATPPSRQTLLFSATLPS 187 (207)
T ss_dssp HTTCHHHHHHHHH-------TSCTTSEEEEECSSCCH
T ss_pred ccchHHHHHHHHH-------hCCccCeEEEEEEecCH
Confidence 6 46666655443 24567899999999985
No 142
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.86 E-value=1e-19 Score=243.90 Aligned_cols=328 Identities=16% Similarity=0.192 Sum_probs=205.1
Q ss_pred CCCHHHHHHHHHHH--------cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000129 495 QLNRVQSRVYKSAL--------SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l--------~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~ 566 (2114)
.|+|+|.+++..++ .+..+.|++.+||+|||++++..+...+...... .....++|||+|+ +|+.|+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~----~p~~~~~LiV~P~-sll~qW 129 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDC----KPEIDKVIVVSPS-SLVRNW 129 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTS----SCSCSCEEEEECH-HHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccc----cCCCCcEEEEecH-HHHHHH
Confidence 69999999998775 3455799999999999999988777666543211 0112368999997 899999
Q ss_pred HHHHHHhhccCCcEEEEEeCCCccChh-h----h------ccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccc
Q 000129 567 VGNLSNRLQMYDVKVRELSGDQTLTRQ-Q----I------EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 567 ~~~~~~~~~~~gi~v~~l~Gd~~~~~~-~----~------~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l 635 (2114)
.+++.+++.. .+.+..+.|+...... . . ..++|+|+|++.+..... ......+++||+||+|.+
T Consensus 130 ~~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~----~l~~~~~~~vI~DEaH~i 204 (644)
T 1z3i_X 130 YNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE----VLHKGKVGLVICDEGHRL 204 (644)
T ss_dssp HHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT----TTTTSCCCEEEETTGGGC
T ss_pred HHHHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH----HhhcCCccEEEEECceec
Confidence 9999988764 4556666665432211 1 0 147899999997532211 122345789999999998
Q ss_pred ccCCchhHHHHHHHHHHHHhhccccccEEEEccccC-C-hHH---HHHHHhccc---------------------c----
Q 000129 636 HDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP-N-YED---VALFLRVNL---------------------E---- 685 (2114)
Q Consensus 636 ~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlp-n-~~d---va~~l~~~~---------------------~---- 685 (2114)
......... .+.. . ...+.++||||.- | ..+ +-.|+.... .
T Consensus 205 kn~~~~~~~-al~~-------l-~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~ 275 (644)
T 1z3i_X 205 KNSDNQTYL-ALNS-------M-NAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDK 275 (644)
T ss_dssp CTTCHHHHH-HHHH-------H-CCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSH
T ss_pred CChhhHHHH-HHHh-------c-ccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHH
Confidence 653222111 1111 2 2346799999932 1 111 111111000 0
Q ss_pred ----------------CceEeecCC------cccccceeEEEeeccCchh---------------------------HHH
Q 000129 686 ----------------KGLFYFDNS------YRPVPLSQQYIGIQVKKPL---------------------------QRF 716 (2114)
Q Consensus 686 ----------------~~~~~f~~~------~rpv~l~~~~~~~~~~~~~---------------------------~~~ 716 (2114)
.+ +..... .-|.... ..+.+...... ..+
T Consensus 276 ~~~~~~~~~~~L~~~l~~-~~lRR~k~~v~~~LP~k~~-~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l 353 (644)
T 1z3i_X 276 DRAAGEQKLQELISIVNR-CLIRRTSDILSKYLPVKIE-QVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSI 353 (644)
T ss_dssp HHHHHHHHHHHHHHHHHH-HEECCCGGGGGGTSCCEEE-EEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHhhHHhHhhhCCCceE-EEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHH
Confidence 00 000000 0111111 11111100000 000
Q ss_pred HHhhH-------------------------------------------HHHHHHHHH---hCCCeEEEEecChHHHHHHH
Q 000129 717 QLMND-------------------------------------------LCYEKVVAV---AGKHQVLIFVHSRKETAKTA 750 (2114)
Q Consensus 717 ~~~~~-------------------------------------------~~~~~i~~~---~~~~~vLVFv~sr~~~~~~a 750 (2114)
..+.+ .+...+... ..+.++|||++.+..+..++
T Consensus 354 ~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~ 433 (644)
T 1z3i_X 354 TSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFE 433 (644)
T ss_dssp HHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHH
Confidence 00000 011112221 23679999999999998888
Q ss_pred HHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCc---eEEEec
Q 000129 751 RAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV---QVLVST 827 (2114)
Q Consensus 751 ~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i---~VLVaT 827 (2114)
..|...+. .+..+||+++..+|..+++.|++|.. .+|+||
T Consensus 434 ~~l~~~g~-------------------------------------~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st 476 (644)
T 1z3i_X 434 KLCRNRRY-------------------------------------LYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSS 476 (644)
T ss_dssp HHHHHHTC-------------------------------------CEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEG
T ss_pred HHHHHCCC-------------------------------------CEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEec
Confidence 87765432 35667999999999999999999876 489999
Q ss_pred hHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCc
Q 000129 828 ATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890 (2114)
Q Consensus 828 ~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e 890 (2114)
.+++.|+|++++++||+ ||++- ++..+.|++||++|.|..+...++.+.....
T Consensus 477 ~a~g~Glnl~~a~~Vi~----~d~~w------np~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~t 529 (644)
T 1z3i_X 477 KAGGCGLNLIGANRLVM----FDPDW------NPANDEQAMARVWRDGQKKTCYIYRLLSTGT 529 (644)
T ss_dssp GGSCTTCCCTTEEEEEE----CSCCS------SHHHHHHHHTTSSSTTCCSCEEEEEEEETTS
T ss_pred ccccCCcccccCCEEEE----ECCCC------CccHHHHHHHhhhhcCCCCceEEEEEEECCC
Confidence 99999999999999999 55543 6678999999999999776667776766654
No 143
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.85 E-value=4.2e-21 Score=223.14 Aligned_cols=175 Identities=22% Similarity=0.271 Sum_probs=135.2
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
|++.+.+.+ .||..|+++|.++++.++.+ .+++++||||+|||++|+++++..+.... .+.++||++|+
T Consensus 21 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~li~~~TGsGKT~~~~~~~~~~~~~~~--------~~~~~lil~Pt 91 (220)
T 1t6n_A 21 LKPELLRAIVDCGFEHPSEVQHECIPQAILG-MDVLCQAKSGMGKTAVFVLATLQQLEPVT--------GQVSVLVMCHT 91 (220)
T ss_dssp CCHHHHHHHHHTTCCCCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHCCCCT--------TCCCEEEECSC
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCCchhhhhhHHHHHhhhccC--------CCEEEEEEeCC
Confidence 566666666 68999999999999998886 45999999999999999999998864321 23589999999
Q ss_pred HHHHHHHHHHHHHhhccC-CcEEEEEeCCCccChhh----hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccc
Q 000129 560 KALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ----IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL 634 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~----~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~ 634 (2114)
++|+.|+++.+.++.... ++++..++|+....... ...++|+|+||+++..+.+... ..+++++++|+||||+
T Consensus 92 ~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~lViDEah~ 169 (220)
T 1t6n_A 92 RELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS--LNLKHIKHFILDECDK 169 (220)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS--SCCTTCCEEEEESHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCC--CCcccCCEEEEcCHHH
Confidence 999999999999887665 78999999987654432 1346999999999855544432 4578899999999999
Q ss_pred cccCCchhHHHHHHHHHHHHhhccccccEEEEccccCC
Q 000129 635 LHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN 672 (2114)
Q Consensus 635 l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn 672 (2114)
+.+..+ +...+.++ ....+...|++++|||+|+
T Consensus 170 ~~~~~~--~~~~~~~i---~~~~~~~~~~i~~SAT~~~ 202 (220)
T 1t6n_A 170 MLEQLD--MRRDVQEI---FRMTPHEKQVMMFSATLSK 202 (220)
T ss_dssp HHSSHH--HHHHHHHH---HHTSCSSSEEEEEESCCCT
T ss_pred HhcccC--cHHHHHHH---HHhCCCcCeEEEEEeecCH
Confidence 875321 22222222 2334568899999999986
No 144
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.85 E-value=5.1e-20 Score=253.00 Aligned_cols=326 Identities=17% Similarity=0.196 Sum_probs=207.4
Q ss_pred CCCCHHHHHHHHHHH---cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 494 TQLNRVQSRVYKSAL---SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~~l---~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.+|+|+|.+++..++ ..+.+.|++.+||+|||++++..+...+..... ...+|||+| .+|+.|+.++|
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~--------~~~~LIV~P-~sll~qW~~E~ 305 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQ--------NGPHIIVVP-LSTMPAWLDTF 305 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSC--------CSCEEEECC-TTTHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCC--------CCCEEEEEC-chHHHHHHHHH
Confidence 379999999998554 456689999999999999987776655443321 225899999 78999999999
Q ss_pred HHhhccCCcEEEEEeCCCccChh---------------hhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccc
Q 000129 571 SNRLQMYDVKVRELSGDQTLTRQ---------------QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~---------------~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l 635 (2114)
.+++. ++++..++|+...... .....+|+|+|++.+..-... .....+++|||||||.+
T Consensus 306 ~~~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~----l~~~~w~~vIvDEaH~l 379 (800)
T 3mwy_W 306 EKWAP--DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE----LGSIKWQFMAVDEAHRL 379 (800)
T ss_dssp HHHST--TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH----HHTSEEEEEEETTGGGG
T ss_pred HHHCC--CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH----HhcCCcceeehhhhhhh
Confidence 88764 5678888887543221 123578999999976221111 11124689999999998
Q ss_pred ccCCchhHHHHHHHHHHHHhhccccccEEEEccccC--ChHHHHHHHhccccCceE------eecCC-------------
Q 000129 636 HDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP--NYEDVALFLRVNLEKGLF------YFDNS------------- 694 (2114)
Q Consensus 636 ~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlp--n~~dva~~l~~~~~~~~~------~f~~~------------- 694 (2114)
...... +... +... ...+.++||||.- +..++...+..-.. +.+ .+...
T Consensus 380 kn~~s~-~~~~-------l~~l-~~~~rl~LTgTPiqN~l~el~~ll~fL~p-~~~~~~~~~~~~~~~~~~~~~~~~L~~ 449 (800)
T 3mwy_W 380 KNAESS-LYES-------LNSF-KVANRMLITGTPLQNNIKELAALVNFLMP-GRFTIDQEIDFENQDEEQEEYIHDLHR 449 (800)
T ss_dssp CCSSSH-HHHH-------HTTS-EEEEEEEECSCCCSSCSHHHHHHHHHHCS-CCC---------CCTTHHHHHHHHHHH
T ss_pred cCchhH-HHHH-------HHHh-hhccEEEeeCCcCCCCHHHHHHHHHHhCc-cccCchhhhcccccchhHHHHHHHHHH
Confidence 643221 1111 1222 2345689999941 34444333321100 000 00000
Q ss_pred -ccc-------------ccc-eeEEEeeccCchhHH---------------------------HHHhh------------
Q 000129 695 -YRP-------------VPL-SQQYIGIQVKKPLQR---------------------------FQLMN------------ 720 (2114)
Q Consensus 695 -~rp-------------v~l-~~~~~~~~~~~~~~~---------------------------~~~~~------------ 720 (2114)
.+| .|- ....+.+........ +..+.
T Consensus 450 ~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~ 529 (800)
T 3mwy_W 450 RIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNA 529 (800)
T ss_dssp TTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSH
T ss_pred HHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcch
Confidence 000 010 111111111000000 00000
Q ss_pred -----------------------------HHHHHHHHHHh-CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccC
Q 000129 721 -----------------------------DLCYEKVVAVA-GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKED 770 (2114)
Q Consensus 721 -----------------------------~~~~~~i~~~~-~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~ 770 (2114)
..+.+.+.... .++++||||..+..+..++..|...+.
T Consensus 530 ~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~------------ 597 (800)
T 3mwy_W 530 EERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGI------------ 597 (800)
T ss_dssp HHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTC------------
T ss_pred HHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCC------------
Confidence 01111122222 367999999999998888888876542
Q ss_pred chhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCc---eEEEechHhhhhcCCCceEEEEecce
Q 000129 771 SVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV---QVLVSTATLAWGVNLPAHTVIIKGTQ 847 (2114)
Q Consensus 771 ~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i---~VLVaT~tla~GVdlP~v~vVI~~~~ 847 (2114)
.+..+||+++..+|..+++.|++|.. .+|+||.+++.|+|+|++++||.++.
T Consensus 598 -------------------------~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~ 652 (800)
T 3mwy_W 598 -------------------------NFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDS 652 (800)
T ss_dssp -------------------------CCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSC
T ss_pred -------------------------CEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecC
Confidence 35667999999999999999998654 49999999999999999999999554
Q ss_pred eccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcH
Q 000129 848 IYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891 (2114)
Q Consensus 848 ~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~ 891 (2114)
++ ++..+.|++||++|.|..+...++.+++....
T Consensus 653 ~w----------np~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~Ti 686 (800)
T 3mwy_W 653 DW----------NPQADLQAMARAHRIGQKNHVMVYRLVSKDTV 686 (800)
T ss_dssp CS----------CSHHHHHHHTTTSCSSCCSCEEEEEEEETTSH
T ss_pred CC----------ChhhHHHHHHHHHhcCCCceEEEEEEecCCCH
Confidence 44 45679999999999998777888877776543
No 145
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.84 E-value=6.6e-20 Score=251.89 Aligned_cols=326 Identities=14% Similarity=0.146 Sum_probs=210.8
Q ss_pred CCCCHHHHHHHHHHH---cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000129 1340 KHFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il---~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~ 1416 (2114)
..++|+|.+++..++ ..+.+.|++.+||+|||+++...+...+......+ .+|||+| .+|+.|+.+++. ++..
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~--~~LIV~P-~sll~qW~~E~~-~~~p 310 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNG--PHIIVVP-LSTMPAWLDTFE-KWAP 310 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCS--CEEEECC-TTTHHHHHHHHH-HHST
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCC--CEEEEEC-chHHHHHHHHHH-HHCC
Confidence 379999999998654 45678999999999999998666655544433344 7899999 788999999888 4543
Q ss_pred CCCcEEEEEcCCcccch---------------hhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCC
Q 000129 1417 GLGMRVVELTGETAMDL---------------KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2114)
Q Consensus 1417 ~~g~~v~~l~G~~~~~~---------------~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g 1481 (2114)
+.++..++|...... ......+|+|+|++.+....... .-..+++||+||||++.+...
T Consensus 311 --~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l----~~~~w~~vIvDEaH~lkn~~s 384 (800)
T 3mwy_W 311 --DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAEL----GSIKWQFMAVDEAHRLKNAES 384 (800)
T ss_dssp --TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHH----HTSEEEEEEETTGGGGCCSSS
T ss_pred --CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHH----hcCCcceeehhhhhhhcCchh
Confidence 577888888654321 12235589999999875432221 123679999999999965432
Q ss_pred chHHHHHHHHHHHHhhcCCCceEEEEcccCCC--hhHHH---HHhcCCCCc---eeecCCC--------------CC---
Q 000129 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLAN--AKDLG---EWIGATSHG---LFNFPPG--------------VR--- 1536 (2114)
Q Consensus 1482 ~~le~i~srl~~i~~~~~~~~riV~lSATl~n--~~dla---~wl~~~~~~---~~~f~~~--------------~r--- 1536 (2114)
.. ...+ ..+ ...+.++||||+-. ..++. .|+.-.... .+.+... .+
T Consensus 385 ~~----~~~l----~~l-~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~ 455 (800)
T 3mwy_W 385 SL----YESL----NSF-KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFI 455 (800)
T ss_dssp HH----HHHH----TTS-EEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGE
T ss_pred HH----HHHH----HHh-hhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHH
Confidence 11 1111 222 23456889999832 33333 333211000 0000000 00
Q ss_pred ----------ccCc-EEEEecccccch-----HHHHHh------------------------------------------
Q 000129 1537 ----------PVPL-EIHIQGVDITNF-----EARMQA------------------------------------------ 1558 (2114)
Q Consensus 1537 ----------pv~l-~~~~~~~~~~~~-----~~~~~~------------------------------------------ 1558 (2114)
..|- ...+........ ......
T Consensus 456 lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~ 535 (800)
T 3mwy_W 456 LRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQ 535 (800)
T ss_dssp EECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCC
T ss_pred hhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHH
Confidence 0111 111111110000 000000
Q ss_pred -----------------cCH---HHHHHH-HHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccch
Q 000129 1559 -----------------MTK---PTFTAI-VQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVE 1617 (2114)
Q Consensus 1559 -----------------~~~---~~~~~i-~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~ 1617 (2114)
... .....+ ......+.++|||+..+..+..++..|.
T Consensus 536 ~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~---------------------- 593 (800)
T 3mwy_W 536 KFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLS---------------------- 593 (800)
T ss_dssp CC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHH----------------------
T ss_pred hcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHH----------------------
Confidence 000 001111 2222456789999999988777665542
Q ss_pred hhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCc---eEEEecCccccccCCCCcEEEEEeeeEecCCcCc
Q 000129 1618 PFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKI---KVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENA 1694 (2114)
Q Consensus 1618 ~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i---~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~ 1694 (2114)
..+..+..+||+++..+|..+++.|++|.. .+|++|.+++.|+|+++..+|| ++
T Consensus 594 -------------~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI----------~~ 650 (800)
T 3mwy_W 594 -------------IKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVV----------IF 650 (800)
T ss_dssp -------------HHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEE----------ES
T ss_pred -------------hCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEE----------Ee
Confidence 124568899999999999999999998655 4999999999999999999999 78
Q ss_pred CCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCc
Q 000129 1695 HTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1695 ~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~ 1729 (2114)
+.+.++..+.|++||++|.|......++.++....
T Consensus 651 D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~T 685 (800)
T 3mwy_W 651 DSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDT 685 (800)
T ss_dssp SCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTS
T ss_pred cCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCC
Confidence 99999999999999999998778888888887764
No 146
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.84 E-value=1.5e-20 Score=216.22 Aligned_cols=183 Identities=21% Similarity=0.283 Sum_probs=137.6
Q ss_pred ChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc-CCCceEEEEEcccHHHHHH
Q 000129 1328 RNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1328 ~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~-~~~~~k~l~I~Ptr~La~q 1405 (2114)
.....+.+.. ||..|+|+|.++++.++++ .++++++|||||||++|.+++++.+.... ...+++++|++|+++|+.|
T Consensus 9 ~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~-~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q 87 (207)
T 2gxq_A 9 KPEILEALHGRGLTTPTPIQAAALPLALEG-KDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQ 87 (207)
T ss_dssp CHHHHHHHHHTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHH
T ss_pred CHHHHHHHHHcCCCCCCHHHHHHHHHHcCC-CCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHH
Confidence 3344455544 7999999999999999885 55999999999999999999999876421 1223489999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcccc---hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCc
Q 000129 1406 RYRDWEIKFGQGLGMRVVELTGETAMD---LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP 1482 (2114)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~l~G~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~ 1482 (2114)
+++.+++ +.. +.++..++|+.... ......++|+|+||+++..++++ ....+.+++++|+||||++.+..
T Consensus 88 ~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~iViDEah~~~~~~-- 160 (207)
T 2gxq_A 88 VASELTA-VAP--HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ--GVLDLSRVEVAVLDEADEMLSMG-- 160 (207)
T ss_dssp HHHHHHH-HCT--TSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHH--TSSCCTTCSEEEEESHHHHHHTT--
T ss_pred HHHHHHH-Hhh--cceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHc--CCcchhhceEEEEEChhHhhccc--
Confidence 9999995 433 36788888876643 22335679999999999887765 34467889999999999886543
Q ss_pred hHHHHHHHHHHHHhhcCCCceEEEEcccCCC-hhHHHHHhc
Q 000129 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIG 1522 (2114)
Q Consensus 1483 ~le~i~srl~~i~~~~~~~~riV~lSATl~n-~~dla~wl~ 1522 (2114)
+...+..+....+.+.|++++|||+++ ..++++++.
T Consensus 161 ----~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 197 (207)
T 2gxq_A 161 ----FEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYM 197 (207)
T ss_dssp ----CHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHC
T ss_pred ----hHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHc
Confidence 222333344455678999999999986 345665543
No 147
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.84 E-value=1.8e-19 Score=230.01 Aligned_cols=322 Identities=16% Similarity=0.141 Sum_probs=210.4
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.++++|-..--.+..| + |....||+|||++|.+|++-.... +. .+.+++|++.||.+-++.+. .+...+|+
T Consensus 75 r~~dvQligg~~L~~G-~--iaEM~TGEGKTLva~lp~~lnAL~---G~--~vhVvT~ndyLA~rdae~m~-~l~~~Lgl 145 (822)
T 3jux_A 75 RPFDVQVMGGIALHEG-K--VAEMKTGEGKTLAATMPIYLNALI---GK--GVHLVTVNDYLARRDALWMG-PVYLFLGL 145 (822)
T ss_dssp CCCHHHHHHHHHHHTT-C--EEECCTTSCHHHHTHHHHHHHHTT---SS--CEEEEESSHHHHHHHHHHHH-HHHHHTTC
T ss_pred CCcHHHHHHHHHHhCC-C--hhhccCCCCccHHHHHHHHHHHhc---CC--ceEEEeccHHHHHhHHHHHH-HHHHHhCC
Confidence 5777777776666543 3 889999999999999998744333 33 68899999999999888777 45556799
Q ss_pred EEEEEcCC--------------------------------------------------cccc-hhhccCCcEEEEChhhH
Q 000129 1421 RVVELTGE--------------------------------------------------TAMD-LKLLEKGQIIISTPEKW 1449 (2114)
Q Consensus 1421 ~v~~l~G~--------------------------------------------------~~~~-~~~l~~~~IIV~TPe~l 1449 (2114)
+|++++.+ .+.. .+..-.+||+++|..-|
T Consensus 146 svg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItYgTn~Ef 225 (822)
T 3jux_A 146 RVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYGTNNEF 225 (822)
T ss_dssp CEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEEEEHHHH
T ss_pred EEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEEccCcch
Confidence 99998872 1111 22223469999999886
Q ss_pred H-HHHhh-hc---ccccccceeEEEeccccccc-C-CC------Cch--HHHHHHHHHHHHhhc----------------
Q 000129 1450 D-ALSRR-WK---QRKYVQQVSLFIIDELHLIG-G-QG------GPV--LEVIVSRMRYIASQV---------------- 1498 (2114)
Q Consensus 1450 ~-~l~r~-~~---~~~~l~~v~liIiDEaH~l~-~-~~------g~~--le~i~srl~~i~~~~---------------- 1498 (2114)
- ..+|. .. .........+.||||+|.++ + .+ |+. -..+..++..+...+
T Consensus 226 gFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~~v~ 305 (822)
T 3jux_A 226 GFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKARTII 305 (822)
T ss_dssp HHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSSCEE
T ss_pred hhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcccCeEE
Confidence 2 23443 11 12234568999999999542 1 11 110 000111111110000
Q ss_pred ----------------------------------------CC--------------------------------------
Q 000129 1499 ----------------------------------------EN-------------------------------------- 1500 (2114)
Q Consensus 1499 ----------------------------------------~~-------------------------------------- 1500 (2114)
..
T Consensus 306 lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaK 385 (822)
T 3jux_A 306 LTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAIEAK 385 (822)
T ss_dssp ECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHHHHH
T ss_pred ECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHHHHHH
Confidence 00
Q ss_pred -----------------------CceEEEEcccCCCh-hHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHH
Q 000129 1501 -----------------------KIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARM 1556 (2114)
Q Consensus 1501 -----------------------~~riV~lSATl~n~-~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~ 1556 (2114)
=.++.|||+|+... .++.+..+.. ++.. |..+|..-... ............
T Consensus 386 Egv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~---vv~I-Ptnkp~~R~d~-~d~vy~t~~eK~ 460 (822)
T 3jux_A 386 EGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME---VVVI-PTHKPMIRKDH-DDLVFRTQKEKY 460 (822)
T ss_dssp HSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC---EEEC-CCSSCCCCEEC-CCEEESSHHHHH
T ss_pred cCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe---EEEE-CCCCCcceeec-CcEEEecHHHHH
Confidence 13488999998663 3555555543 3333 44455322211 000001111111
Q ss_pred HhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccce
Q 000129 1557 QAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGV 1636 (2114)
Q Consensus 1557 ~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV 1636 (2114)
..+...+......+.|+||||+|++.|+.++..|.. .+..+
T Consensus 461 ----~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~-----------------------------------~Gi~~ 501 (822)
T 3jux_A 461 ----EKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKK-----------------------------------KGIPH 501 (822)
T ss_dssp ----HHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHT-----------------------------------TTCCC
T ss_pred ----HHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHH-----------------------------------CCCCE
Confidence 122233333324678999999999999999877732 23347
Q ss_pred EeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCC--------CcEEEEEeeeEecCCcCcCCCCCHhHHHHhHc
Q 000129 1637 GYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLT--------AHLVVVMGTQYYDGQENAHTDYPVTDLLQMMG 1708 (2114)
Q Consensus 1637 ~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip--------~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~G 1708 (2114)
..+||+....+|..+...++.| .|+|||++++||+|++ +..+|| +++.|.+...|.||+|
T Consensus 502 ~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVI----------nte~Pes~r~y~qriG 569 (822)
T 3jux_A 502 QVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCII----------GTERHESRRIDNQLRG 569 (822)
T ss_dssp EEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEE----------ESSCCSSHHHHHHHHT
T ss_pred EEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEE----------ecCCCCCHHHHHHhhC
Confidence 8899998777777777777776 6999999999999998 667899 8999999999999999
Q ss_pred ccCCCCCCCceEEEEEeecCc
Q 000129 1709 HASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1709 RAGR~~~~~~G~~iil~~~~~ 1729 (2114)
||||. +.+|.++.|++..+
T Consensus 570 RTGRq--G~~G~a~~fvsleD 588 (822)
T 3jux_A 570 RAGRQ--GDPGESIFFLSLED 588 (822)
T ss_dssp TSSCS--SCCCEEEEEEETTS
T ss_pred ccccC--CCCeeEEEEechhH
Confidence 99998 78999999998776
No 148
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.84 E-value=2.6e-19 Score=239.92 Aligned_cols=329 Identities=15% Similarity=0.148 Sum_probs=207.7
Q ss_pred CCCCHHHHHHHHHHH--------cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCC--CceEEEEEcccHHHHHHHHHH
Q 000129 1340 KHFNPIQTQVFTVLY--------NTDDNVLVAAPTGSGKTICSEFAILRNHQKASET--GVMRAVYIAPLEALAKERYRD 1409 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il--------~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~--~~~k~l~I~Ptr~La~q~~~~ 1409 (2114)
..++|+|.+++..++ .++.+.|++.+||+|||+.+...+...+...... ...++|||+|+ +|+.|+.++
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E 132 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNE 132 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHH
Confidence 379999999999876 3456799999999999999977766655542111 11268999997 899999999
Q ss_pred HHHHhcCCCCcEEEEEcCCcccch-----hhc------cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC
Q 000129 1410 WEIKFGQGLGMRVVELTGETAMDL-----KLL------EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (2114)
Q Consensus 1410 ~~~~f~~~~g~~v~~l~G~~~~~~-----~~l------~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~ 1478 (2114)
+.+.++. .+.+..+.|+..... ..+ ...+|+|+|++.+...... ..-..+++||+||+|++.+
T Consensus 133 ~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~----l~~~~~~~vI~DEaH~ikn 206 (644)
T 1z3i_X 133 VGKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEV----LHKGKVGLVICDEGHRLKN 206 (644)
T ss_dssp HHHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTT----TTTSCCCEEEETTGGGCCT
T ss_pred HHHHcCC--CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHH----hhcCCccEEEEECceecCC
Confidence 9854433 355666666543321 111 1368999999986543221 1234678999999999975
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCChh--------------------HHHHHhcCC------CC------
Q 000129 1479 QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAK--------------------DLGEWIGAT------SH------ 1526 (2114)
Q Consensus 1479 ~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~--------------------dla~wl~~~------~~------ 1526 (2114)
.....+ ..++.+ ...+.++||||+-... .+.+++... ..
T Consensus 207 ~~~~~~----~al~~l-----~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~ 277 (644)
T 1z3i_X 207 SDNQTY----LALNSM-----NAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDR 277 (644)
T ss_dssp TCHHHH----HHHHHH-----CCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHH
T ss_pred hhhHHH----HHHHhc-----ccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHH
Confidence 432111 112222 2457799999974321 122222100 00
Q ss_pred ----------------ceeecC----CCCCccCcEEEE-eccccc---chHHH-------------------HHh-----
Q 000129 1527 ----------------GLFNFP----PGVRPVPLEIHI-QGVDIT---NFEAR-------------------MQA----- 1558 (2114)
Q Consensus 1527 ----------------~~~~f~----~~~rpv~l~~~~-~~~~~~---~~~~~-------------------~~~----- 1558 (2114)
.++.-. ...-|...+..+ ...... .|... +..
T Consensus 278 ~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lr 357 (644)
T 1z3i_X 278 AAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLK 357 (644)
T ss_dssp HHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHH
Confidence 000000 000111111111 000000 00000 000
Q ss_pred ---------------------------------------cC-H-HHHHHHHHHh--cCCCCEEEEeCChHHHHHHHHHHH
Q 000129 1559 ---------------------------------------MT-K-PTFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLM 1595 (2114)
Q Consensus 1559 ---------------------------------------~~-~-~~~~~i~~~l--~~~~~~LVFv~sr~~a~~la~~L~ 1595 (2114)
.. + .....++..+ ..+.++|||++.+..+..++..|.
T Consensus 358 k~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~ 437 (644)
T 1z3i_X 358 KLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCR 437 (644)
T ss_dssp HHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHH
Confidence 00 0 0111222221 246789999999988876665442
Q ss_pred HhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCce---EEEecCccccc
Q 000129 1596 TYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIK---VCVMSSSMCWG 1672 (2114)
Q Consensus 1596 ~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~---VLVaT~~la~G 1672 (2114)
..+..+..+||+++..+|..+++.|++|... +|++|.+++.|
T Consensus 438 -----------------------------------~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~G 482 (644)
T 1z3i_X 438 -----------------------------------NRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCG 482 (644)
T ss_dssp -----------------------------------HHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTT
T ss_pred -----------------------------------HCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCC
Confidence 1245678899999999999999999998764 89999999999
Q ss_pred cCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCc
Q 000129 1673 VPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1673 vdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~ 1729 (2114)
+|++++.+|| +++.|.++..+.|++||++|.|......++.++....
T Consensus 483 lnl~~a~~Vi----------~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~t 529 (644)
T 1z3i_X 483 LNLIGANRLV----------MFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGT 529 (644)
T ss_dssp CCCTTEEEEE----------ECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTS
T ss_pred cccccCCEEE----------EECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCC
Confidence 9999999999 8999999999999999999998777777887777653
No 149
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.84 E-value=2.8e-19 Score=239.20 Aligned_cols=214 Identities=16% Similarity=0.167 Sum_probs=140.9
Q ss_pred ccceeEEEecccccccCCCCchHHHHHHHHHHHHhh------------------cCCCceEEEEcccCCChhHHHHHhcC
Q 000129 1462 VQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQ------------------VENKIRIVALSTSLANAKDLGEWIGA 1523 (2114)
Q Consensus 1462 l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~------------------~~~~~riV~lSATl~n~~dla~wl~~ 1523 (2114)
+.+-.+||+||+|.+.+..+..+.....+...+... .+...+++++|||+++.. +.. .
T Consensus 323 l~~~~llVlDEah~~~~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~~SAT~~~~~-~~~--~- 398 (664)
T 1c4o_A 323 FPEDFLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSALDNRPLRFEEFLERVSQVVFVSATPGPFE-LAH--S- 398 (664)
T ss_dssp SCTTCEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSSCCCHHHHHHTCSEEEEEESSCCHHH-HHH--C-
T ss_pred HhhccEEEEecccccHHHHHHHHHHHHHHHHHHHHccccchhhhhcCcccHHHHHhhcCCEEEEecCCCHHH-HHh--h-
Confidence 344569999999987643333444444333322210 013578999999986432 221 0
Q ss_pred CCCceeec--CCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccC
Q 000129 1524 TSHGLFNF--PPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMD 1601 (2114)
Q Consensus 1524 ~~~~~~~f--~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~ 1601 (2114)
..+... .+.....|. +.+..+. ... ......+......+.++||||+|++.|+.++..|..
T Consensus 399 --~~~~~~~~r~~~l~~p~-i~v~~~~-----~~~----~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~----- 461 (664)
T 1c4o_A 399 --GRVVEQIIRPTGLLDPL-VRVKPTE-----NQI----LDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVE----- 461 (664)
T ss_dssp --SEEEEECSCTTCCCCCE-EEEECST-----THH----HHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHH-----
T ss_pred --hCeeeeeeccCCCCCCe-EEEeccc-----chH----HHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHh-----
Confidence 111111 111111221 2222221 111 122344445545788999999999999999876632
Q ss_pred CcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEE
Q 000129 1602 GDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVV 1681 (2114)
Q Consensus 1602 ~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vV 1681 (2114)
.+..+.++||+|++.+|..+++.|++|.++|||||+++++|+|+|++.+|
T Consensus 462 ------------------------------~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lV 511 (664)
T 1c4o_A 462 ------------------------------HGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLV 511 (664)
T ss_dssp ------------------------------TTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEE
T ss_pred ------------------------------cCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEE
Confidence 13457889999999999999999999999999999999999999999988
Q ss_pred EEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHH
Q 000129 1682 VMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYK 1734 (2114)
Q Consensus 1682 I~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~ 1734 (2114)
| .|+.. .+..|.+..+|+||+|||||. ..|.|++++...+....+
T Consensus 512 I----~~d~d-~~G~p~s~~~~iQr~GRagR~---~~G~~i~~~~~~~~~~~~ 556 (664)
T 1c4o_A 512 A----ILDAD-KEGFLRSERSLIQTIGRAARN---ARGEVWLYADRVSEAMQR 556 (664)
T ss_dssp E----ETTTT-SCSGGGSHHHHHHHHGGGTTS---TTCEEEEECSSCCHHHHH
T ss_pred E----EeCCc-ccCCCCCHHHHHHHHCccCcC---CCCEEEEEEcCCCHHHHH
Confidence 8 12111 122378999999999999996 489999999887655443
No 150
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.84 E-value=1.9e-19 Score=240.66 Aligned_cols=118 Identities=18% Similarity=0.227 Sum_probs=99.7
Q ss_pred CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHH
Q 000129 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (2114)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~ 811 (2114)
.+.++||||+|++.++.++..|.+.+. .+.++||+|++.+|..
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi-------------------------------------~~~~lh~~~~~~~R~~ 480 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGI-------------------------------------RARYLHHELDAFKRQA 480 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTC-------------------------------------CEEEECTTCCHHHHHH
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCC-------------------------------------CceeecCCCCHHHHHH
Confidence 467999999999999999999987542 3567799999999999
Q ss_pred HHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcH
Q 000129 812 VEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891 (2114)
Q Consensus 812 v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~ 891 (2114)
+++.|++|.++|||||+++++|+|+|++++||+ |+.+..++ +.|..+|+||+|||||.+ .|.++++++..+.
T Consensus 481 ~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~----~d~d~~G~-p~s~~~~iQr~GRagR~~---~G~~i~~~~~~~~ 552 (664)
T 1c4o_A 481 LIRDLRLGHYDCLVGINLLREGLDIPEVSLVAI----LDADKEGF-LRSERSLIQTIGRAARNA---RGEVWLYADRVSE 552 (664)
T ss_dssp HHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEE----TTTTSCSG-GGSHHHHHHHHGGGTTST---TCEEEEECSSCCH
T ss_pred HHHHhhcCCceEEEccChhhcCccCCCCCEEEE----eCCcccCC-CCCHHHHHHHHCccCcCC---CCEEEEEEcCCCH
Confidence 999999999999999999999999999999998 55432111 338889999999999974 7999999987665
Q ss_pred HHH
Q 000129 892 RYY 894 (2114)
Q Consensus 892 ~~~ 894 (2114)
...
T Consensus 553 ~~~ 555 (664)
T 1c4o_A 553 AMQ 555 (664)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 151
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.80 E-value=9.1e-18 Score=217.88 Aligned_cols=131 Identities=18% Similarity=0.108 Sum_probs=108.4
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.|+ .|+++|..+++.++.++ |.+|+||+|||++|.+|++.....+ ..+++++||+.||.|.++.+
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~---IaeakTGeGKTLvf~Lp~~L~aL~G-----------~qv~VvTPTreLA~Qdae~m 140 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK---IAEMKTGEGKTLVATLAVALNALTG-----------KGVHVVTVNDYLARRDAEWM 140 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS---EEECCSTHHHHHHHHHHHHHHHTTC-----------SCCEEEESSHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc---eeeccCCCchHHHHHHHHHHHHHhC-----------CCEEEEeCCHHHHHHHHHHH
Confidence 478 89999999999988775 9999999999999999996544322 26999999999999999999
Q ss_pred HHhhccCCcEEEEEeCCCccChh-hhccceEEEcCHhHH--HHHHhcc---CCCcccc---cccEEEEecccccc
Q 000129 571 SNRLQMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW--DIITRKS---GDRTYTQ---LVKLLIIDEIHLLH 636 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~-~~~~~~IiV~TPek~--d~l~r~~---~~~~~l~---~v~liIiDEaH~l~ 636 (2114)
..++..+|++|+.++|+.+...+ ....++|+|+||+++ |.+..+. .....++ .++++||||+|.++
T Consensus 141 ~~l~~~lGLsv~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 141 GPVYRGLGLSVGVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HHHHHTTTCCEEECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HHHHHhcCCeEEEEeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 99999999999999998764332 235789999999996 6666653 1224566 89999999999875
No 152
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.80 E-value=7.8e-18 Score=225.08 Aligned_cols=213 Identities=16% Similarity=0.166 Sum_probs=139.3
Q ss_pred eeEEEecccccccCCCCchHHHHHHHHHHHHhh------------------cCCCceEEEEcccCCChhHHHHHhcCCCC
Q 000129 1465 VSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQ------------------VENKIRIVALSTSLANAKDLGEWIGATSH 1526 (2114)
Q Consensus 1465 v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~------------------~~~~~riV~lSATl~n~~dla~wl~~~~~ 1526 (2114)
-.+||+||+|.+.+..+..++.+.++....... .+...+++++|||++... +.. ....
T Consensus 332 ~~llVlDEa~~~l~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~~SAT~~~~~-~~~--~~~~- 407 (661)
T 2d7d_A 332 DFMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYE-IEH--TDEM- 407 (661)
T ss_dssp SCEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSCCCCHHHHHHTCSEEEEECSSCCHHH-HHH--CSSC-
T ss_pred CcEEEEecHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhcccccHHHHhccCCCEEEEecCCChhH-HHh--hhCe-
Confidence 358999999987543333333333333222111 113578999999985432 211 1110
Q ss_pred ceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccc
Q 000129 1527 GLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKS 1606 (2114)
Q Consensus 1527 ~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~ 1606 (2114)
.-....+.....|. +.+..+. ... ...+..+......+.++||||+|++.|+.++..|..
T Consensus 408 ~~~~~r~~~l~~p~-i~v~~~~-----~~~----~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~---------- 467 (661)
T 2d7d_A 408 VEQIIRPTGLLDPL-IDVRPIE-----GQI----DDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKE---------- 467 (661)
T ss_dssp EEECCCTTCCCCCE-EEEECST-----THH----HHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHH----------
T ss_pred eeeeecccCCCCCe-EEEeccc-----chH----HHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHh----------
Confidence 01111121122222 2222221 111 122344555545778999999999999999876632
Q ss_pred cccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeee
Q 000129 1607 AFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQ 1686 (2114)
Q Consensus 1607 ~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~ 1686 (2114)
.+..+.++||++++.+|..+++.|++|.++|||||+++++|+|+|++.+||
T Consensus 468 -------------------------~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi---- 518 (661)
T 2d7d_A 468 -------------------------IGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVA---- 518 (661)
T ss_dssp -------------------------TTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEE----
T ss_pred -------------------------cCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEE----
Confidence 134578899999999999999999999999999999999999999999888
Q ss_pred EecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHH
Q 000129 1687 YYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYK 1734 (2114)
Q Consensus 1687 ~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~ 1734 (2114)
.|+.. .+..|.+..+|+||+|||||. ..|.|++++...+....+
T Consensus 519 ~~d~d-~~G~p~s~~~~iQr~GRagR~---~~G~~i~~~~~~~~~~~~ 562 (661)
T 2d7d_A 519 ILDAD-KEGFLRSERSLIQTIGRAARN---AEGRVIMYADKITKSMEI 562 (661)
T ss_dssp ETTTT-CCTTTTSHHHHHHHHHTTTTS---TTCEEEEECSSCCHHHHH
T ss_pred EeCcc-cccCCCCHHHHHHHhCcccCC---CCCEEEEEEeCCCHHHHH
Confidence 11111 122388999999999999995 689999999887655433
No 153
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.78 E-value=2.3e-17 Score=220.49 Aligned_cols=122 Identities=18% Similarity=0.269 Sum_probs=101.0
Q ss_pred HHHHh-CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCC
Q 000129 727 VVAVA-GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMT 805 (2114)
Q Consensus 727 i~~~~-~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~ 805 (2114)
+.... .+.++||||+|++.++.++..|.+.+. .+.++||+|+
T Consensus 438 l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi-------------------------------------~~~~lh~~~~ 480 (661)
T 2d7d_A 438 IQARIERNERVLVTTLTKKMSEDLTDYLKEIGI-------------------------------------KVNYLHSEIK 480 (661)
T ss_dssp HHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTC-------------------------------------CEEEECTTCC
T ss_pred HHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCC-------------------------------------CeEEEeCCCC
Confidence 44433 467999999999999999999987542 2566799999
Q ss_pred HHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEE
Q 000129 806 RGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885 (2114)
Q Consensus 806 ~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil 885 (2114)
+.+|..+++.|++|.++|||||+++++|+|+|++++||+ |+.+..++ +.|..+|+||+|||||. ..|.++++
T Consensus 481 ~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~----~d~d~~G~-p~s~~~~iQr~GRagR~---~~G~~i~~ 552 (661)
T 2d7d_A 481 TLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAI----LDADKEGF-LRSERSLIQTIGRAARN---AEGRVIMY 552 (661)
T ss_dssp HHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEE----TTTTCCTT-TTSHHHHHHHHHTTTTS---TTCEEEEE
T ss_pred HHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEE----eCcccccC-CCCHHHHHHHhCcccCC---CCCEEEEE
Confidence 999999999999999999999999999999999999998 55432111 23889999999999996 57999999
Q ss_pred cCCCcHHH
Q 000129 886 TGHSELRY 893 (2114)
Q Consensus 886 ~~~~e~~~ 893 (2114)
++..+...
T Consensus 553 ~~~~~~~~ 560 (661)
T 2d7d_A 553 ADKITKSM 560 (661)
T ss_dssp CSSCCHHH
T ss_pred EeCCCHHH
Confidence 98866543
No 154
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.73 E-value=4.1e-16 Score=202.63 Aligned_cols=130 Identities=18% Similarity=0.139 Sum_probs=105.2
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
|+ .|+++|..+++.++.++ +..++||||||++|.+|++..... +. .+++++||++||.|.+..+. .+...
T Consensus 77 G~-~Pt~VQ~~~ip~LlqG~---IaeakTGeGKTLvf~Lp~~L~aL~---G~--qv~VvTPTreLA~Qdae~m~-~l~~~ 146 (997)
T 2ipc_A 77 GM-RHFDVQLIGGAVLHEGK---IAEMKTGEGKTLVATLAVALNALT---GK--GVHVVTVNDYLARRDAEWMG-PVYRG 146 (997)
T ss_dssp CC-CCCHHHHHHHHHHHTTS---EEECCSTHHHHHHHHHHHHHHHTT---CS--CCEEEESSHHHHHHHHHHHH-HHHHT
T ss_pred CC-CCcHHHHhhcccccCCc---eeeccCCCchHHHHHHHHHHHHHh---CC--CEEEEeCCHHHHHHHHHHHH-HHHHh
Confidence 58 89999999999998865 899999999999999999644333 23 78999999999999999888 55566
Q ss_pred CCcEEEEEcCCcccchh-hccCCcEEEEChhhH-HHHHhhhc----cccccc---ceeEEEeccccccc
Q 000129 1418 LGMRVVELTGETAMDLK-LLEKGQIIISTPEKW-DALSRRWK----QRKYVQ---QVSLFIIDELHLIG 1477 (2114)
Q Consensus 1418 ~g~~v~~l~G~~~~~~~-~l~~~~IIV~TPe~l-~~l~r~~~----~~~~l~---~v~liIiDEaH~l~ 1477 (2114)
+|++|+.++|+.+...+ ....++|+|+||+.+ ..+++... ....++ ++.++|+||+|.++
T Consensus 147 lGLsv~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 147 LGLSVGVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp TTCCEEECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred cCCeEEEEeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 79999999998876533 334679999999998 56666532 123466 89999999999765
No 155
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.73 E-value=1.1e-16 Score=209.99 Aligned_cols=127 Identities=24% Similarity=0.229 Sum_probs=86.0
Q ss_pred CCCCCCCHHHHHHHHHH---HcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSA---LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~---l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~ 567 (2114)
.|| +++|+|.+++..+ +..+.++++.||||+|||++|++|++.. +.+++|++||++|+.|+.
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~--------------~~~~~~~~~t~~l~~q~~ 68 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL--------------KKKVLIFTRTHSQLDSIY 68 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH--------------TCEEEEEESCHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC--------------CCcEEEEcCCHHHHHHHH
Confidence 467 8999999987643 4566789999999999999999998653 138999999999999999
Q ss_pred HHHHHhhccCCcEEEEEeCCCcc--------------------------------------------------Chhhhcc
Q 000129 568 GNLSNRLQMYDVKVRELSGDQTL--------------------------------------------------TRQQIEE 597 (2114)
Q Consensus 568 ~~~~~~~~~~gi~v~~l~Gd~~~--------------------------------------------------~~~~~~~ 597 (2114)
+.+.++ ++++..+.|.... .+.....
T Consensus 69 ~~~~~l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~ 144 (540)
T 2vl7_A 69 KNAKLL----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKD 144 (540)
T ss_dssp HHHGGG----TCCEEEC---------------------------------------------------------CTTGGG
T ss_pred HHHHhc----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhc
Confidence 887662 4555555542210 0111356
Q ss_pred ceEEEcCHhHH-HHHHhcc-C---CCcccccccEEEEecccccc
Q 000129 598 TQIIVTTPEKW-DIITRKS-G---DRTYTQLVKLLIIDEIHLLH 636 (2114)
Q Consensus 598 ~~IiV~TPek~-d~l~r~~-~---~~~~l~~v~liIiDEaH~l~ 636 (2114)
++|||+|+..+ +...++. . ....+....++||||||.|.
T Consensus 145 adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 145 KDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp CSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred CCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 79999999986 4344332 1 01134567899999999983
No 156
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=191.11 Aligned_cols=169 Identities=26% Similarity=0.327 Sum_probs=114.7
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHH-HHHHH
Q 000129 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE-VVGNL 570 (2114)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q-~~~~~ 570 (2114)
+...|+++|.++++.++.+ .+++++||||+|||++|++++++.+...... ..+.++||++|+++|+.| +.+.+
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~-~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~-----~~~~~~lil~p~~~L~~q~~~~~~ 103 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEG-KNIIICLPTGSGKTRVAVYIAKDHLDKKKKA-----SEPGKVIVLVNKVLLVEQLFRKEF 103 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTT-CCEEEECSCHHHHHHHHHHHHHHHHHHHHHT-----TCCCCEEEEESSHHHHHHHHHHTH
T ss_pred CCCCchHHHHHHHHHHhcC-CCEEEEcCCCCCHHHHHHHHHHHHHhhcccc-----cCCCcEEEEECHHHHHHHHHHHHH
Confidence 3458999999999998875 5699999999999999999999877654211 123479999999999999 66667
Q ss_pred HHhhccCCcEEEEEeCCCccCh---hhhccceEEEcCHhHHHHHHhccCC----CcccccccEEEEecccccccCCchhH
Q 000129 571 SNRLQMYDVKVRELSGDQTLTR---QQIEETQIIVTTPEKWDIITRKSGD----RTYTQLVKLLIIDEIHLLHDNRGPVL 643 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~---~~~~~~~IiV~TPek~d~l~r~~~~----~~~l~~v~liIiDEaH~l~d~rg~~l 643 (2114)
.++.. .++++..++|+..... .....++|+|+||+++......... ...+..+++|||||||++.+. ..+
T Consensus 104 ~~~~~-~~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~--~~~ 180 (216)
T 3b6e_A 104 QPFLK-KWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKE--AVY 180 (216)
T ss_dssp HHHHT-TTSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC---------CH
T ss_pred HHHhc-cCceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccC--CcH
Confidence 66544 3788999999876543 2235789999999998544443321 135678999999999998642 234
Q ss_pred HHHHHHHHHHH-hhc---------cccccEEEEccc
Q 000129 644 ESIVARTVRQI-ETT---------KEHIRLVGLSAT 669 (2114)
Q Consensus 644 e~iv~rl~~~~-~~~---------~~~~riv~lSAT 669 (2114)
..++.+++... ... .+..++|+||||
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 181 NNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 44444433221 111 157899999998
No 157
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.72 E-value=6.9e-17 Score=178.19 Aligned_cols=144 Identities=22% Similarity=0.395 Sum_probs=115.2
Q ss_pred cccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHH
Q 000129 697 PVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREI 776 (2114)
Q Consensus 697 pv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~ 776 (2114)
+..+.+.++.+... .++..+.++ +....++++||||++++.+..++..|...+
T Consensus 7 ~~~i~~~~~~~~~~---~K~~~L~~l-----l~~~~~~~~lVF~~~~~~~~~l~~~L~~~~------------------- 59 (163)
T 2hjv_A 7 TRNIEHAVIQVREE---NKFSLLKDV-----LMTENPDSCIIFCRTKEHVNQLTDELDDLG------------------- 59 (163)
T ss_dssp CCCEEEEEEECCGG---GHHHHHHHH-----HHHHCCSSEEEECSSHHHHHHHHHHHHHTT-------------------
T ss_pred cccceEEEEECChH---HHHHHHHHH-----HHhcCCCcEEEEECCHHHHHHHHHHHHHcC-------------------
Confidence 33466666655432 233333322 233457799999999999999999887642
Q ss_pred HHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCcc
Q 000129 777 LQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAW 856 (2114)
Q Consensus 777 l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~ 856 (2114)
..+..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ |+++.
T Consensus 60 ------------------~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~----~~~p~--- 114 (163)
T 2hjv_A 60 ------------------YPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVIN----YDLPL--- 114 (163)
T ss_dssp ------------------CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEE----SSCCS---
T ss_pred ------------------CcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCchhcCCEEEE----eCCCC---
Confidence 34778899999999999999999999999999999999999999999999 66654
Q ss_pred ccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcHHHHHHh
Q 000129 857 TELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSL 897 (2114)
Q Consensus 857 ~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~~l 897 (2114)
+..+|+||+|||||.| ..|.++++++..+..++.++
T Consensus 115 ---~~~~~~qr~GR~~R~g--~~g~~~~~~~~~~~~~~~~i 150 (163)
T 2hjv_A 115 ---EKESYVHRTGRTGRAG--NKGKAISFVTAFEKRFLADI 150 (163)
T ss_dssp ---SHHHHHHHTTTSSCTT--CCEEEEEEECGGGHHHHHHH
T ss_pred ---CHHHHHHhccccCcCC--CCceEEEEecHHHHHHHHHH
Confidence 7889999999999987 67999999998887766654
No 158
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=4e-17 Score=182.33 Aligned_cols=125 Identities=18% Similarity=0.250 Sum_probs=102.7
Q ss_pred HhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHH
Q 000129 730 VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDR 809 (2114)
Q Consensus 730 ~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R 809 (2114)
....+++||||++++.+..++..|...+ .++..+||+|++.+|
T Consensus 31 ~~~~~~~lVF~~~~~~~~~l~~~L~~~~-------------------------------------~~~~~~~g~~~~~~R 73 (175)
T 2rb4_A 31 SITIGQAIIFCQTRRNAKWLTVEMIQDG-------------------------------------HQVSLLSGELTVEQR 73 (175)
T ss_dssp TSCCSEEEEECSCHHHHHHHHHHHHTTT-------------------------------------CCEEEECSSCCHHHH
T ss_pred hCCCCCEEEEECCHHHHHHHHHHHHHcC-------------------------------------CcEEEEeCCCCHHHH
Confidence 3456799999999999999998886532 357889999999999
Q ss_pred HHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCC
Q 000129 810 QLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889 (2114)
Q Consensus 810 ~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~ 889 (2114)
..+++.|++|.++|||||+++++|+|+|++++||+++.|+++. .+.+..+|+||+|||||.| ..|.++++++..
T Consensus 74 ~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~----~~~~~~~~~qr~GR~gR~g--~~g~~~~~~~~~ 147 (175)
T 2rb4_A 74 ASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQG----EEPDYETYLHRIGRTGRFG--KKGLAFNMIEVD 147 (175)
T ss_dssp HHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--C----CSCCHHHHHHHHCBC------CCEEEEEEECGG
T ss_pred HHHHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCcc----ccCCHHHHHHHhcccccCC--CCceEEEEEccc
Confidence 9999999999999999999999999999999999955554432 3468999999999999987 679999999988
Q ss_pred cHHHHHHh
Q 000129 890 ELRYYLSL 897 (2114)
Q Consensus 890 e~~~~~~l 897 (2114)
+...+..+
T Consensus 148 ~~~~~~~i 155 (175)
T 2rb4_A 148 ELPSLMKI 155 (175)
T ss_dssp GHHHHHHH
T ss_pred hHHHHHHH
Confidence 87665543
No 159
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.71 E-value=6.9e-17 Score=186.03 Aligned_cols=120 Identities=25% Similarity=0.409 Sum_probs=104.2
Q ss_pred HHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHH
Q 000129 729 AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGD 808 (2114)
Q Consensus 729 ~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~ 808 (2114)
....++++||||++++.+..++..|...+ .++..+||+|++.+
T Consensus 27 ~~~~~~~~lVF~~~~~~~~~l~~~L~~~~-------------------------------------~~~~~lhg~~~~~~ 69 (212)
T 3eaq_A 27 YVASPDRAMVFTRTKAETEEIAQGLLRLG-------------------------------------HPAQALHGDLSQGE 69 (212)
T ss_dssp HHHCCSCEEEECSSHHHHHHHHHHHHHHT-------------------------------------CCEEEECSSSCHHH
T ss_pred HhCCCCeEEEEeCCHHHHHHHHHHHHHcC-------------------------------------CCEEEEECCCCHHH
Confidence 34457899999999999999999887643 34678899999999
Q ss_pred HHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCC
Q 000129 809 RQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2114)
Q Consensus 809 R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2114)
|..+++.|++|.++|||||+++++|+|+|++++||+ |+++. +..+|+||+|||||.| ..|.|+++++.
T Consensus 70 r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~----~~~p~------~~~~~~qr~GR~gR~g--~~g~~~~l~~~ 137 (212)
T 3eaq_A 70 RERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVH----YRLPD------RAEAYQHRSGRTGRAG--RGGRVVLLYGP 137 (212)
T ss_dssp HHHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEEE----SSCCS------SHHHHHHHHTTBCCCC----BEEEEEECG
T ss_pred HHHHHHHHHCCCCeEEEecChhhcCCCCccCcEEEE----CCCCc------CHHHHHHHhcccCCCC--CCCeEEEEEch
Confidence 999999999999999999999999999999999999 67664 7889999999999987 67999999998
Q ss_pred CcHHHHHHh
Q 000129 889 SELRYYLSL 897 (2114)
Q Consensus 889 ~e~~~~~~l 897 (2114)
.+...+..+
T Consensus 138 ~~~~~~~~i 146 (212)
T 3eaq_A 138 RERRDVEAL 146 (212)
T ss_dssp GGHHHHHHH
T ss_pred hHHHHHHHH
Confidence 886665543
No 160
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.71 E-value=5.4e-17 Score=190.41 Aligned_cols=171 Identities=15% Similarity=0.165 Sum_probs=128.0
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.++++|.++++.+..+ ++++++||||||||+++.+++++..........++++|++|+++|+.|+++.+...++...|.
T Consensus 61 p~~~~q~~~i~~i~~g-~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~ 139 (235)
T 3llm_A 61 PVKKFESEILEAISQN-SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGK 139 (235)
T ss_dssp GGGGGHHHHHHHHHHC-SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTS
T ss_pred ChHHHHHHHHHHHhcC-CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCc
Confidence 5789999999999874 569999999999999999999887765333234589999999999999999998777655555
Q ss_pred EEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCC
Q 000129 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVEN 1500 (2114)
Q Consensus 1421 ~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~ 1500 (2114)
.++.-..... ......++|+|+||+++..+++. .++++++||+||||.+ +.........++.+.... +
T Consensus 140 ~~g~~~~~~~--~~~~~~~~Ivv~Tpg~l~~~l~~-----~l~~~~~lVlDEah~~----~~~~~~~~~~l~~i~~~~-~ 207 (235)
T 3llm_A 140 SCGYSVRFES--ILPRPHASIMFCTVGVLLRKLEA-----GIRGISHVIVDEIHER----DINTDFLLVVLRDVVQAY-P 207 (235)
T ss_dssp SEEEEETTEE--ECCCSSSEEEEEEHHHHHHHHHH-----CCTTCCEEEECCTTSC----CHHHHHHHHHHHHHHHHC-T
T ss_pred eEEEeechhh--ccCCCCCeEEEECHHHHHHHHHh-----hhcCCcEEEEECCccC----CcchHHHHHHHHHHHhhC-C
Confidence 5554222111 11114568999999998877764 3889999999999963 233334445566655543 5
Q ss_pred CceEEEEcccCCChhHHHHHhcCCC
Q 000129 1501 KIRIVALSTSLANAKDLGEWIGATS 1525 (2114)
Q Consensus 1501 ~~riV~lSATl~n~~dla~wl~~~~ 1525 (2114)
+.|++++|||+++.. +++|++..+
T Consensus 208 ~~~~il~SAT~~~~~-~~~~~~~~p 231 (235)
T 3llm_A 208 EVRIVLMSATIDTSM-FCEYFFNCP 231 (235)
T ss_dssp TSEEEEEECSSCCHH-HHHHTTSCC
T ss_pred CCeEEEEecCCCHHH-HHHHcCCCC
Confidence 789999999997665 999997653
No 161
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.70 E-value=2.5e-17 Score=198.81 Aligned_cols=153 Identities=18% Similarity=0.290 Sum_probs=119.9
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
+|+++|.++++.++.+ .+.+++||||+|||+++++++...+..+ ..+++|++|+++|+.|+.+++.+++
T Consensus 113 ~l~~~Q~~ai~~~l~~-~~~ll~~~tGsGKT~~~~~~~~~~~~~~----------~~~~lil~Pt~~L~~q~~~~l~~~~ 181 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVN-RRRILNLPTSAGRSLIQALLARYYLENY----------EGKILIIVPTTALTTQMADDFVDYR 181 (282)
T ss_dssp CCCHHHHHHHHHHHHH-SEEEECCCTTSCHHHHHHHHHHHHHHHC----------SSEEEEECSSHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHhc-CCeEEEcCCCCCcHHHHHHHHHHHHHcC----------CCeEEEEECCHHHHHHHHHHHHHhc
Confidence 7999999999998887 4588899999999999988888776543 2389999999999999999999887
Q ss_pred ccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHH
Q 000129 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQI 654 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~ 654 (2114)
...+..+..++|+...........+|+|+||+. +.+.. ...+.++++||+||||++. ++.++.++.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~---l~~~~--~~~~~~~~~vIiDEaH~~~---~~~~~~il~------ 247 (282)
T 1rif_A 182 LFSHAMIKKIGGGASKDDKYKNDAPVVVGTWQT---VVKQP--KEWFSQFGMMMNDECHLAT---GKSISSIIS------ 247 (282)
T ss_dssp SCCGGGEEECSTTCSSTTCCCTTCSEEEECHHH---HTTSC--GGGGGGEEEEEEETGGGCC---HHHHHHHTT------
T ss_pred ccccceEEEEeCCCcchhhhccCCcEEEEchHH---HHhhH--HHHHhhCCEEEEECCccCC---cccHHHHHH------
Confidence 655677888888766544444678999999985 33332 2457789999999999986 334444433
Q ss_pred hhccccccEEEEccccCCh
Q 000129 655 ETTKEHIRLVGLSATLPNY 673 (2114)
Q Consensus 655 ~~~~~~~riv~lSATlpn~ 673 (2114)
......++++||||+++.
T Consensus 248 -~~~~~~~~l~lSATp~~~ 265 (282)
T 1rif_A 248 -GLNNCMFKFGLSGSLRDG 265 (282)
T ss_dssp -TCTTCCEEEEECSSCCTT
T ss_pred -HhhcCCeEEEEeCCCCCc
Confidence 234578999999998864
No 162
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.70 E-value=3.3e-17 Score=189.30 Aligned_cols=167 Identities=22% Similarity=0.304 Sum_probs=114.8
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc-CCCceEEEEEcccHHHHHH-HHHHHHHHhcC
Q 000129 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAKE-RYRDWEIKFGQ 1416 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~-~~~~~k~l~I~Ptr~La~q-~~~~~~~~f~~ 1416 (2114)
...|+|+|.++++.++++ .++++++|||+|||++|.+++++.+.... ...+.++||++|+++|+.| +.+.+. .+..
T Consensus 31 ~~~l~~~Q~~~i~~~~~~-~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~-~~~~ 108 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPALEG-KNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQ-PFLK 108 (216)
T ss_dssp CCCCCHHHHHHHHHHHTT-CCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHH-HHHT
T ss_pred CCCchHHHHHHHHHHhcC-CCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHH-HHhc
Confidence 458999999999999874 56999999999999999999998776532 1112389999999999999 555565 5554
Q ss_pred CCCcEEEEEcCCcccch---hhccCCcEEEEChhhHHHHHhhhcc----cccccceeEEEecccccccCCCCchHHHHHH
Q 000129 1417 GLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQ----RKYVQQVSLFIIDELHLIGGQGGPVLEVIVS 1489 (2114)
Q Consensus 1417 ~~g~~v~~l~G~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~----~~~l~~v~liIiDEaH~l~~~~g~~le~i~s 1489 (2114)
. +.++..++|+..... .....++|+|+||+++...+..... ...+.++++||+||||++.+. ..++.++.
T Consensus 109 ~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~--~~~~~~~~ 185 (216)
T 3b6e_A 109 K-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKE--AVYNNIMR 185 (216)
T ss_dssp T-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC---------CHHHHHH
T ss_pred c-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccC--CcHHHHHH
Confidence 3 678888888765442 2334679999999999887776432 145788999999999998632 34444444
Q ss_pred HHHHHH-hh---------cCCCceEEEEccc
Q 000129 1490 RMRYIA-SQ---------VENKIRIVALSTS 1510 (2114)
Q Consensus 1490 rl~~i~-~~---------~~~~~riV~lSAT 1510 (2114)
++.... .. .....++|+||||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 186 HYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHhcccccccccccCCCCcceEEEeecC
Confidence 332211 11 1157899999998
No 163
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.70 E-value=2e-16 Score=182.10 Aligned_cols=124 Identities=20% Similarity=0.288 Sum_probs=109.8
Q ss_pred cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHH
Q 000129 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2114)
Q Consensus 1572 ~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v 1651 (2114)
..++++||||+++..+..++..|.. .+.++..+||+|++.+|..+
T Consensus 29 ~~~~~~lVF~~~~~~~~~l~~~L~~-----------------------------------~~~~~~~lhg~~~~~~r~~~ 73 (212)
T 3eaq_A 29 ASPDRAMVFTRTKAETEEIAQGLLR-----------------------------------LGHPAQALHGDLSQGERERV 73 (212)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHH-----------------------------------HTCCEEEECSSSCHHHHHHH
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHH-----------------------------------cCCCEEEEECCCCHHHHHHH
Confidence 4678999999999999988866632 24578999999999999999
Q ss_pred HHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHH
Q 000129 1652 SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE 1731 (2114)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~ 1731 (2114)
++.|++|.++|||||+++++|+|+|++.+|| +++.|.+..+|+||+|||||. +..|.|++++...+..
T Consensus 74 ~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi----------~~~~p~~~~~~~qr~GR~gR~--g~~g~~~~l~~~~~~~ 141 (212)
T 3eaq_A 74 LGAFRQGEVRVLVATDVAARGLDIPQVDLVV----------HYRLPDRAEAYQHRSGRTGRA--GRGGRVVLLYGPRERR 141 (212)
T ss_dssp HHHHHSSSCCEEEECTTTTCSSSCCCBSEEE----------ESSCCSSHHHHHHHHTTBCCC--C--BEEEEEECGGGHH
T ss_pred HHHHHCCCCeEEEecChhhcCCCCccCcEEE----------ECCCCcCHHHHHHHhcccCCC--CCCCeEEEEEchhHHH
Confidence 9999999999999999999999999999999 889999999999999999998 5789999999999888
Q ss_pred HHHHHHHhccC
Q 000129 1732 YYKKFLRLTQN 1742 (2114)
Q Consensus 1732 ~~~~~lRl~~n 1742 (2114)
.++.+.+....
T Consensus 142 ~~~~i~~~~~~ 152 (212)
T 3eaq_A 142 DVEALERAVGR 152 (212)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHHhcC
Confidence 88877766554
No 164
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.69 E-value=5.6e-17 Score=180.45 Aligned_cols=114 Identities=22% Similarity=0.302 Sum_probs=100.8
Q ss_pred HHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHH
Q 000129 729 AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGD 808 (2114)
Q Consensus 729 ~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~ 808 (2114)
.....+++||||++++.+..++..|...+ .++..+||+|++.+
T Consensus 27 ~~~~~~~~lVF~~~~~~~~~l~~~L~~~~-------------------------------------~~~~~~hg~~~~~~ 69 (172)
T 1t5i_A 27 DVLEFNQVVIFVKSVQRCIALAQLLVEQN-------------------------------------FPAIAIHRGMPQEE 69 (172)
T ss_dssp HHSCCSSEEEECSSHHHHHHHHHHHHHTT-------------------------------------CCEEEECTTSCHHH
T ss_pred HhCCCCcEEEEECCHHHHHHHHHHHHhcC-------------------------------------CCEEEEECCCCHHH
Confidence 34457799999999999999999887642 34778899999999
Q ss_pred HHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCC
Q 000129 809 RQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2114)
Q Consensus 809 R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2114)
|..+++.|++|.++|||||+++++|+|+|++++||+ ||++. +..+|+||+|||||.| ..|.++++++.
T Consensus 70 r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~----~d~p~------~~~~~~qr~GR~~R~g--~~g~~~~~~~~ 137 (172)
T 1t5i_A 70 RLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFN----YDMPE------DSDTYLHRVARAGRFG--TKGLAITFVSD 137 (172)
T ss_dssp HHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEE----SSCCS------SHHHHHHHHHHHTGGG--CCCEEEEEECS
T ss_pred HHHHHHHHHCCCCcEEEECCchhcCcchhhCCEEEE----ECCCC------CHHHHHHHhcccccCC--CCcEEEEEEcC
Confidence 999999999999999999999999999999999999 66664 7889999999999987 67999999987
Q ss_pred CcH
Q 000129 889 SEL 891 (2114)
Q Consensus 889 ~e~ 891 (2114)
.+.
T Consensus 138 ~~~ 140 (172)
T 1t5i_A 138 END 140 (172)
T ss_dssp HHH
T ss_pred hhH
Confidence 643
No 165
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.69 E-value=1.4e-17 Score=195.30 Aligned_cols=199 Identities=22% Similarity=0.270 Sum_probs=135.7
Q ss_pred cccccccCCcccccccccCCC-------CCcccccCcceEEecCCCCCCCCCCCCCccccCCCChhhHhhcCCCCCCCHH
Q 000129 427 DTLAFQQGGLFMANRKCDLPE-------GSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRV 499 (2114)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~lp~-------~s~~~~~~~~eei~vp~~~~~~~~~~~~l~~i~~lp~~~~~~f~g~~~l~~i 499 (2114)
..++|++|.++++ .++.+|. ++++...+.|+++. +......++..+.......+| .+.....|+++
T Consensus 25 ~~~~~~~g~~~~~-~~~~l~~~~w~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~~~~~~~p-----~~~~~~~l~~~ 97 (237)
T 2fz4_A 25 AEIYYERGTIVVK-GDAHVPHAKFDSRSGTYRALAFRYRDII-EYFESNGIEFVDNAADPIPTP-----YFDAEISLRDY 97 (237)
T ss_dssp EEEEEETTEEEEE-SCSCCTTCEEETTTTEEEEEGGGHHHHH-HHHHHTTCCEEEESCCCCCCC-----CCCCCCCCCHH
T ss_pred eEEEEecceEEEe-ccccCCCceeccccchhhcchhhHHHHH-HHHHHcCCCccccccccCCCc-----cccCCCCcCHH
Confidence 4689999999985 6778888 55555555555443 221122222111111222232 22334589999
Q ss_pred HHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCc
Q 000129 500 QSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDV 579 (2114)
Q Consensus 500 Q~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi 579 (2114)
|.+++..++.+ .++++++|||+|||.+++.++... +.+++|++|+++|+.|+.+.+.+ + ++
T Consensus 98 Q~~ai~~~~~~-~~~ll~~~tG~GKT~~a~~~~~~~--------------~~~~liv~P~~~L~~q~~~~~~~-~---~~ 158 (237)
T 2fz4_A 98 QEKALERWLVD-KRGCIVLPTGSGKTHVAMAAINEL--------------STPTLIVVPTLALAEQWKERLGI-F---GE 158 (237)
T ss_dssp HHHHHHHHTTT-SEEEEEESSSTTHHHHHHHHHHHS--------------CSCEEEEESSHHHHHHHHHHHGG-G---CG
T ss_pred HHHHHHHHHhC-CCEEEEeCCCCCHHHHHHHHHHHc--------------CCCEEEEeCCHHHHHHHHHHHHh-C---CC
Confidence 99999988766 459999999999999998877653 12699999999999999999887 3 67
Q ss_pred E-EEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhcc
Q 000129 580 K-VRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTK 658 (2114)
Q Consensus 580 ~-v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~ 658 (2114)
+ +..++|+... ..+|+|+||+.+...... ....+++|||||+|++.+. .++.++. ..
T Consensus 159 ~~v~~~~g~~~~------~~~i~v~T~~~l~~~~~~-----~~~~~~llIiDEaH~l~~~---~~~~i~~--------~~ 216 (237)
T 2fz4_A 159 EYVGEFSGRIKE------LKPLTVSTYDSAYVNAEK-----LGNRFMLLIFDEVHHLPAE---SYVQIAQ--------MS 216 (237)
T ss_dssp GGEEEESSSCBC------CCSEEEEEHHHHHHTHHH-----HTTTCSEEEEECSSCCCTT---THHHHHH--------TC
T ss_pred CeEEEEeCCCCC------cCCEEEEeHHHHHhhHHH-----hcccCCEEEEECCccCCCh---HHHHHHH--------hc
Confidence 7 8889887653 578999999975322221 2245899999999998753 2333222 22
Q ss_pred ccccEEEEccccCCh
Q 000129 659 EHIRLVGLSATLPNY 673 (2114)
Q Consensus 659 ~~~riv~lSATlpn~ 673 (2114)
...++++||||+++.
T Consensus 217 ~~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 217 IAPFRLGLTATFERE 231 (237)
T ss_dssp CCSEEEEEEESCC--
T ss_pred cCCEEEEEecCCCCC
Confidence 366789999997653
No 166
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.69 E-value=1.4e-16 Score=176.20 Aligned_cols=120 Identities=19% Similarity=0.374 Sum_probs=99.6
Q ss_pred HHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHH
Q 000129 729 AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGD 808 (2114)
Q Consensus 729 ~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~ 808 (2114)
+....+++||||++++.+..++..|...+ .++..+||+|++.+
T Consensus 26 ~~~~~~~~lVF~~~~~~~~~l~~~L~~~~-------------------------------------~~~~~~~~~~~~~~ 68 (165)
T 1fuk_A 26 DSISVTQAVIFCNTRRKVEELTTKLRNDK-------------------------------------FTVSAIYSDLPQQE 68 (165)
T ss_dssp HHTTCSCEEEEESSHHHHHHHHHHHHHTT-------------------------------------CCEEEECTTSCHHH
T ss_pred HhCCCCCEEEEECCHHHHHHHHHHHHHcC-------------------------------------CCEEEEECCCCHHH
Confidence 33457899999999999999999887532 34778899999999
Q ss_pred HHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCC
Q 000129 809 RQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2114)
Q Consensus 809 R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2114)
|..+++.|++|.++|||||+++++|+|+|++++||+ |+++. +..+|+||+|||||.| ..|.++++++.
T Consensus 69 r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~----~~~p~------~~~~~~qr~GR~gR~g--~~g~~~~~~~~ 136 (165)
T 1fuk_A 69 RDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVIN----YDLPA------NKENYIHRIGRGGRFG--RKGVAINFVTN 136 (165)
T ss_dssp HHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEE----SSCCS------SGGGGGGSSCSCC-------CEEEEEEET
T ss_pred HHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEEE----eCCCC------CHHHHHHHhcccccCC--CCceEEEEEcc
Confidence 999999999999999999999999999999999999 55543 5667999999999987 67999999998
Q ss_pred CcHHHHHHh
Q 000129 889 SELRYYLSL 897 (2114)
Q Consensus 889 ~e~~~~~~l 897 (2114)
.+...+..+
T Consensus 137 ~~~~~~~~~ 145 (165)
T 1fuk_A 137 EDVGAMREL 145 (165)
T ss_dssp TTHHHHHHH
T ss_pred hHHHHHHHH
Confidence 887665543
No 167
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.69 E-value=1.8e-16 Score=177.08 Aligned_cols=123 Identities=18% Similarity=0.242 Sum_probs=106.2
Q ss_pred CCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHH
Q 000129 1573 NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVS 1652 (2114)
Q Consensus 1573 ~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~ 1652 (2114)
..+++||||+++..|..++..|.. .+.++..+||+|++.+|..++
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~-----------------------------------~~~~~~~~~g~~~~~~R~~~~ 77 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQ-----------------------------------DGHQVSLLSGELTVEQRASII 77 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHT-----------------------------------TTCCEEEECSSCCHHHHHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHH-----------------------------------cCCcEEEEeCCCCHHHHHHHH
Confidence 467899999999999999876632 245699999999999999999
Q ss_pred HHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCC------CCHhHHHHhHcccCCCCCCCceEEEEEee
Q 000129 1653 ALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTD------YPVTDLLQMMGHASRPLLDNSGKCVILCH 1726 (2114)
Q Consensus 1653 ~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~------~s~~~~lQr~GRAGR~~~~~~G~~iil~~ 1726 (2114)
+.|++|.++|||||+++++|+|+|++.+|| +++.| .+..+|+||+|||||. +..|.|++++.
T Consensus 78 ~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi----------~~d~p~~~~~~~~~~~~~qr~GR~gR~--g~~g~~~~~~~ 145 (175)
T 2rb4_A 78 QRFRDGKEKVLITTNVCARGIDVKQVTIVV----------NFDLPVKQGEEPDYETYLHRIGRTGRF--GKKGLAFNMIE 145 (175)
T ss_dssp HHHHTTSCSEEEECCSCCTTTCCTTEEEEE----------ESSCCC--CCSCCHHHHHHHHCBC------CCEEEEEEEC
T ss_pred HHHHcCCCeEEEEecchhcCCCcccCCEEE----------EeCCCCCccccCCHHHHHHHhcccccC--CCCceEEEEEc
Confidence 999999999999999999999999999999 77788 8999999999999998 57899999999
Q ss_pred cCcHHHHHHHHHhccC
Q 000129 1727 APRKEYYKKFLRLTQN 1742 (2114)
Q Consensus 1727 ~~~~~~~~~~lRl~~n 1742 (2114)
..+..+++++.+....
T Consensus 146 ~~~~~~~~~i~~~~~~ 161 (175)
T 2rb4_A 146 VDELPSLMKIQDHFNS 161 (175)
T ss_dssp GGGHHHHHHHHHHHTC
T ss_pred cchHHHHHHHHHHhcC
Confidence 9988888887765543
No 168
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.69 E-value=1.4e-16 Score=192.29 Aligned_cols=154 Identities=18% Similarity=0.233 Sum_probs=119.5
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.|+|+|.++++.++.+ .+.++++|||||||+++.+++...+.. ..+ ++||++|+++|+.|++++++ ++....+.
T Consensus 113 ~l~~~Q~~ai~~~l~~-~~~ll~~~tGsGKT~~~~~~~~~~~~~--~~~--~~lil~Pt~~L~~q~~~~l~-~~~~~~~~ 186 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVN-RRRILNLPTSAGRSLIQALLARYYLEN--YEG--KILIIVPTTALTTQMADDFV-DYRLFSHA 186 (282)
T ss_dssp CCCHHHHHHHHHHHHH-SEEEECCCTTSCHHHHHHHHHHHHHHH--CSS--EEEEECSSHHHHHHHHHHHH-HHTSCCGG
T ss_pred CccHHHHHHHHHHHhc-CCeEEEcCCCCCcHHHHHHHHHHHHHc--CCC--eEEEEECCHHHHHHHHHHHH-Hhcccccc
Confidence 7999999999999885 558889999999999998888776654 234 89999999999999999998 56554456
Q ss_pred EEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCC
Q 000129 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVEN 1500 (2114)
Q Consensus 1421 ~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~ 1500 (2114)
.+..+.|+..........++|+|+||+.+. +. ....+.++++||+||||++.+ + .+..+...+..
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~---~~--~~~~~~~~~~vIiDEaH~~~~---~-------~~~~il~~~~~ 251 (282)
T 1rif_A 187 MIKKIGGGASKDDKYKNDAPVVVGTWQTVV---KQ--PKEWFSQFGMMMNDECHLATG---K-------SISSIISGLNN 251 (282)
T ss_dssp GEEECSTTCSSTTCCCTTCSEEEECHHHHT---TS--CGGGGGGEEEEEEETGGGCCH---H-------HHHHHTTTCTT
T ss_pred eEEEEeCCCcchhhhccCCcEEEEchHHHH---hh--HHHHHhhCCEEEEECCccCCc---c-------cHHHHHHHhhc
Confidence 777787776554444467799999998742 22 223578899999999999862 2 33344445556
Q ss_pred CceEEEEcccCCChh
Q 000129 1501 KIRIVALSTSLANAK 1515 (2114)
Q Consensus 1501 ~~riV~lSATl~n~~ 1515 (2114)
..++++||||+++..
T Consensus 252 ~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 252 CMFKFGLSGSLRDGK 266 (282)
T ss_dssp CCEEEEECSSCCTTS
T ss_pred CCeEEEEeCCCCCcc
Confidence 899999999998754
No 169
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.69 E-value=2.3e-16 Score=173.91 Aligned_cols=122 Identities=18% Similarity=0.281 Sum_probs=110.0
Q ss_pred cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHH
Q 000129 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2114)
Q Consensus 1572 ~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v 1651 (2114)
...+++||||+++..|..++..|.. .+.++..+||+|++.+|..+
T Consensus 33 ~~~~~~lVF~~~~~~~~~l~~~L~~-----------------------------------~~~~~~~~hg~~~~~~r~~~ 77 (163)
T 2hjv_A 33 ENPDSCIIFCRTKEHVNQLTDELDD-----------------------------------LGYPCDKIHGGMIQEDRFDV 77 (163)
T ss_dssp HCCSSEEEECSSHHHHHHHHHHHHH-----------------------------------TTCCEEEECTTSCHHHHHHH
T ss_pred cCCCcEEEEECCHHHHHHHHHHHHH-----------------------------------cCCcEEEEeCCCCHHHHHHH
Confidence 4567999999999999999876632 24568999999999999999
Q ss_pred HHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHH
Q 000129 1652 SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE 1731 (2114)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~ 1731 (2114)
++.|++|.++|||||+++++|+|+|++.+|| +++.|.+..+|+||+||+||. +..|.|++++...+..
T Consensus 78 ~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi----------~~~~p~~~~~~~qr~GR~~R~--g~~g~~~~~~~~~~~~ 145 (163)
T 2hjv_A 78 MNEFKRGEYRYLVATDVAARGIDIENISLVI----------NYDLPLEKESYVHRTGRTGRA--GNKGKAISFVTAFEKR 145 (163)
T ss_dssp HHHHHTTSCSEEEECGGGTTTCCCSCCSEEE----------ESSCCSSHHHHHHHTTTSSCT--TCCEEEEEEECGGGHH
T ss_pred HHHHHcCCCeEEEECChhhcCCchhcCCEEE----------EeCCCCCHHHHHHhccccCcC--CCCceEEEEecHHHHH
Confidence 9999999999999999999999999999999 889999999999999999998 5789999999999988
Q ss_pred HHHHHHHhc
Q 000129 1732 YYKKFLRLT 1740 (2114)
Q Consensus 1732 ~~~~~lRl~ 1740 (2114)
+++++.+..
T Consensus 146 ~~~~i~~~~ 154 (163)
T 2hjv_A 146 FLADIEEYI 154 (163)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877544
No 170
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.67 E-value=1.6e-16 Score=178.81 Aligned_cols=143 Identities=17% Similarity=0.286 Sum_probs=98.8
Q ss_pred ccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHH
Q 000129 698 VPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREIL 777 (2114)
Q Consensus 698 v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l 777 (2114)
..+.+.++.+... .+...+. +.+.....++++||||++++.+..++..|...+
T Consensus 18 ~~i~q~~~~v~~~---~K~~~L~----~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g-------------------- 70 (185)
T 2jgn_A 18 ENITQKVVWVEES---DKRSFLL----DLLNATGKDSLTLVFVETKKGADSLEDFLYHEG-------------------- 70 (185)
T ss_dssp TTEEEEEEECCGG---GHHHHHH----HHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTT--------------------
T ss_pred CCceEEEEEeCcH---HHHHHHH----HHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcC--------------------
Confidence 3456666655433 2333222 223233346799999999999999999887532
Q ss_pred HhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccc
Q 000129 778 QSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWT 857 (2114)
Q Consensus 778 ~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~ 857 (2114)
.++..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ ||++.
T Consensus 71 -----------------~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~----~d~p~---- 125 (185)
T 2jgn_A 71 -----------------YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVIN----FDLPS---- 125 (185)
T ss_dssp -----------------CCEEEEC--------CHHHHHHHHTSSSEEEEEC------CCCSBSEEEE----SSCCS----
T ss_pred -----------------CceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEE----eCCCC----
Confidence 34778899999999999999999999999999999999999999999999 67664
Q ss_pred cCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcHHHHHH
Q 000129 858 ELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLS 896 (2114)
Q Consensus 858 ~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~~ 896 (2114)
+..+|+||+|||||.| ..|.++++++..+...+..
T Consensus 126 --s~~~~~Qr~GR~~R~g--~~g~~~~~~~~~~~~~~~~ 160 (185)
T 2jgn_A 126 --DIEEYVHRIGRTGRVG--NLGLATSFFNERNINITKD 160 (185)
T ss_dssp --SHHHHHHHHTTBCCTT--SCEEEEEEECGGGGGGHHH
T ss_pred --CHHHHHHHccccCCCC--CCcEEEEEEchhhHHHHHH
Confidence 7889999999999987 6799999998876554443
No 171
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.66 E-value=4.1e-16 Score=172.34 Aligned_cols=123 Identities=12% Similarity=0.233 Sum_probs=105.9
Q ss_pred cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHH
Q 000129 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2114)
Q Consensus 1572 ~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v 1651 (2114)
...+++||||+++..|..++..|.. .+.++..+||+|++.+|..+
T Consensus 28 ~~~~~~lVF~~~~~~~~~l~~~L~~-----------------------------------~~~~~~~~~~~~~~~~r~~~ 72 (165)
T 1fuk_A 28 ISVTQAVIFCNTRRKVEELTTKLRN-----------------------------------DKFTVSAIYSDLPQQERDTI 72 (165)
T ss_dssp TTCSCEEEEESSHHHHHHHHHHHHH-----------------------------------TTCCEEEECTTSCHHHHHHH
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHH-----------------------------------cCCCEEEEECCCCHHHHHHH
Confidence 3568899999999999998876632 24568999999999999999
Q ss_pred HHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHH
Q 000129 1652 SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE 1731 (2114)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~ 1731 (2114)
++.|++|.++|||||+++++|+|+|++.+|| +++.|.+..+|+||+|||||. +..|.|++++.+.+..
T Consensus 73 ~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi----------~~~~p~~~~~~~qr~GR~gR~--g~~g~~~~~~~~~~~~ 140 (165)
T 1fuk_A 73 MKEFRSGSSRILISTDLLARGIDVQQVSLVI----------NYDLPANKENYIHRIGRGGRF--GRKGVAINFVTNEDVG 140 (165)
T ss_dssp HHHHHTTSCSEEEEEGGGTTTCCCCSCSEEE----------ESSCCSSGGGGGGSSCSCC-------CEEEEEEETTTHH
T ss_pred HHHHHcCCCEEEEEcChhhcCCCcccCCEEE----------EeCCCCCHHHHHHHhcccccC--CCCceEEEEEcchHHH
Confidence 9999999999999999999999999999999 788999999999999999998 5789999999999888
Q ss_pred HHHHHHHhcc
Q 000129 1732 YYKKFLRLTQ 1741 (2114)
Q Consensus 1732 ~~~~~lRl~~ 1741 (2114)
.++.+.+...
T Consensus 141 ~~~~~~~~~~ 150 (165)
T 1fuk_A 141 AMRELEKFYS 150 (165)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHHHc
Confidence 8887775443
No 172
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.65 E-value=9e-16 Score=179.97 Aligned_cols=168 Identities=15% Similarity=0.126 Sum_probs=117.6
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.++++|.++++.+..+ ++++++||||||||+++.++++........ ....+++|++|+++|+.|+++++...+
T Consensus 61 p~~~~q~~~i~~i~~g-~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~------~~~~~~l~~~p~~~la~q~~~~~~~~~ 133 (235)
T 3llm_A 61 PVKKFESEILEAISQN-SVVIIRGATGCGKTTQVPQFILDDFIQNDR------AAECNIVVTQPRRISAVSVAERVAFER 133 (235)
T ss_dssp GGGGGHHHHHHHHHHC-SEEEEECCTTSSHHHHHHHHHHHHHHHTTC------GGGCEEEEEESSHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHhcC-CEEEEEeCCCCCcHHhHHHHHhcchhhcCC------CCceEEEEeccchHHHHHHHHHHHHHh
Confidence 5789999999987765 569999999999999999998887655321 134589999999999999999998766
Q ss_pred c-cCCcEEEEEeCCCccChhhhccceEEEcCHhHH-HHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHH
Q 000129 575 Q-MYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVR 652 (2114)
Q Consensus 575 ~-~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~ 652 (2114)
. ..|..++.-..... ......++|+|+||+++ +.+.+ .++++++|||||||.+ +...+.....+..
T Consensus 134 ~~~~~~~~g~~~~~~~--~~~~~~~~Ivv~Tpg~l~~~l~~------~l~~~~~lVlDEah~~----~~~~~~~~~~l~~ 201 (235)
T 3llm_A 134 GEEPGKSCGYSVRFES--ILPRPHASIMFCTVGVLLRKLEA------GIRGISHVIVDEIHER----DINTDFLLVVLRD 201 (235)
T ss_dssp TCCTTSSEEEEETTEE--ECCCSSSEEEEEEHHHHHHHHHH------CCTTCCEEEECCTTSC----CHHHHHHHHHHHH
T ss_pred ccccCceEEEeechhh--ccCCCCCeEEEECHHHHHHHHHh------hhcCCcEEEEECCccC----CcchHHHHHHHHH
Confidence 5 33444543222111 11124689999999997 44433 3678999999999974 2222222222222
Q ss_pred HHhhccccccEEEEccccCChHHHHHHHhcc
Q 000129 653 QIETTKEHIRLVGLSATLPNYEDVALFLRVN 683 (2114)
Q Consensus 653 ~~~~~~~~~riv~lSATlpn~~dva~~l~~~ 683 (2114)
. ....++.|++++|||+++.. +++|+...
T Consensus 202 i-~~~~~~~~~il~SAT~~~~~-~~~~~~~~ 230 (235)
T 3llm_A 202 V-VQAYPEVRIVLMSATIDTSM-FCEYFFNC 230 (235)
T ss_dssp H-HHHCTTSEEEEEECSSCCHH-HHHHTTSC
T ss_pred H-HhhCCCCeEEEEecCCCHHH-HHHHcCCC
Confidence 2 22345789999999998754 88888643
No 173
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.65 E-value=6.1e-15 Score=193.60 Aligned_cols=126 Identities=17% Similarity=0.162 Sum_probs=85.7
Q ss_pred CCCCCCHHHHHHHHHHH---cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHh
Q 000129 1338 GFKHFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKF 1414 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il---~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f 1414 (2114)
|| .++|+|.+++..++ ..+.++++.||||+|||++|++|++.. .+ +++|++||++|+.|+++++.. +
T Consensus 5 ~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~------~~--~~~~~~~t~~l~~q~~~~~~~-l 74 (540)
T 2vl7_A 5 KL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL------KK--KVLIFTRTHSQLDSIYKNAKL-L 74 (540)
T ss_dssp -----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH------TC--EEEEEESCHHHHHHHHHHHGG-G
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC------CC--cEEEEcCCHHHHHHHHHHHHh-c
Confidence 46 79999999877543 456789999999999999999998742 33 999999999999999988773 3
Q ss_pred cCCCCcEEEEEcCCccc--------------------------------------------------chhhccCCcEEEE
Q 000129 1415 GQGLGMRVVELTGETAM--------------------------------------------------DLKLLEKGQIIIS 1444 (2114)
Q Consensus 1415 ~~~~g~~v~~l~G~~~~--------------------------------------------------~~~~l~~~~IIV~ 1444 (2114)
+.++..+.|.... ..+....++|||+
T Consensus 75 ----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~ 150 (540)
T 2vl7_A 75 ----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAM 150 (540)
T ss_dssp ----TCCEEEC---------------------------------------------------------CTTGGGCSEEEE
T ss_pred ----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEE
Confidence 3444444432100 0122356699999
Q ss_pred ChhhHHH-HHhhhcc----cccccceeEEEeccccccc
Q 000129 1445 TPEKWDA-LSRRWKQ----RKYVQQVSLFIIDELHLIG 1477 (2114)
Q Consensus 1445 TPe~l~~-l~r~~~~----~~~l~~v~liIiDEaH~l~ 1477 (2114)
|+..+.. ..++... ...+....++||||||.+.
T Consensus 151 n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 151 TYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp ETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred ChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 9999754 3332111 1134677899999999884
No 174
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.65 E-value=5.1e-16 Score=187.13 Aligned_cols=119 Identities=25% Similarity=0.407 Sum_probs=98.7
Q ss_pred HHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHH
Q 000129 729 AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGD 808 (2114)
Q Consensus 729 ~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~ 808 (2114)
....++++||||++++.+..++..|...+ .++..+||+|++.+
T Consensus 24 ~~~~~~~~LVF~~t~~~~~~l~~~L~~~g-------------------------------------~~~~~lhg~l~~~~ 66 (300)
T 3i32_A 24 YVASPDRAMVFTRTKAETEEIAQGLLRLG-------------------------------------HPAQALHGDMSQGE 66 (300)
T ss_dssp HHHCCSSEEEECSSHHHHHHHHHHHHTTT-------------------------------------CCEEEECSCCCTHH
T ss_pred HhcCCCCEEEEECCHHHHHHHHHHHHhCC-------------------------------------CCEEEEeCCCCHHH
Confidence 33447899999999999999998886532 35778899999999
Q ss_pred HHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCC
Q 000129 809 RQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2114)
Q Consensus 809 R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2114)
|..+++.|++|.++|||||+++++|+|+|++++||+ |+.+. +..+|+||+|||||.| ..|.|+++++.
T Consensus 67 r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~----~d~p~------s~~~y~Qr~GRagR~g--~~G~~i~l~~~ 134 (300)
T 3i32_A 67 RERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVH----YRMPD------RAEAYQHRSGRTGRAG--RGGRVVLLYGP 134 (300)
T ss_dssp HHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEE----SSCCS------STTHHHHHHTCCC-------CEEEEEECS
T ss_pred HHHHHHHhhcCCceEEEEechhhcCccccceeEEEE----cCCCC------CHHHHHHHccCcCcCC--CCceEEEEeCh
Confidence 999999999999999999999999999999999999 45443 5567999999999987 66999999999
Q ss_pred CcHHHHHH
Q 000129 889 SELRYYLS 896 (2114)
Q Consensus 889 ~e~~~~~~ 896 (2114)
.+..++..
T Consensus 135 ~e~~~~~~ 142 (300)
T 3i32_A 135 RERRDVEA 142 (300)
T ss_dssp STHHHHHH
T ss_pred HHHHHHHH
Confidence 88666554
No 175
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.65 E-value=1.4e-15 Score=183.35 Aligned_cols=124 Identities=19% Similarity=0.288 Sum_probs=107.0
Q ss_pred cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHH
Q 000129 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2114)
Q Consensus 1572 ~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v 1651 (2114)
..++++||||++++.+..++..|.. .+..+..+||+|++.+|..+
T Consensus 26 ~~~~~~LVF~~t~~~~~~l~~~L~~-----------------------------------~g~~~~~lhg~l~~~~r~~~ 70 (300)
T 3i32_A 26 ASPDRAMVFTRTKAETEEIAQGLLR-----------------------------------LGHPAQALHGDMSQGERERV 70 (300)
T ss_dssp HCCSSEEEECSSHHHHHHHHHHHHT-----------------------------------TTCCEEEECSCCCTHHHHHH
T ss_pred cCCCCEEEEECCHHHHHHHHHHHHh-----------------------------------CCCCEEEEeCCCCHHHHHHH
Confidence 3578999999999999988876632 24568999999999999999
Q ss_pred HHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHH
Q 000129 1652 SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE 1731 (2114)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~ 1731 (2114)
++.|++|.++|||||+++++|+|+|++.+|| +++.|.+..+|+||+|||||. +..|.|++++...+..
T Consensus 71 ~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI----------~~d~p~s~~~y~Qr~GRagR~--g~~G~~i~l~~~~e~~ 138 (300)
T 3i32_A 71 MGAFRQGEVRVLVATDVAARGLDIPQVDLVV----------HYRMPDRAEAYQHRSGRTGRA--GRGGRVVLLYGPRERR 138 (300)
T ss_dssp HHHHHHTSCCEEEECSTTTCSTTCCCCSEEE----------ESSCCSSTTHHHHHHTCCC-------CEEEEEECSSTHH
T ss_pred HHHhhcCCceEEEEechhhcCccccceeEEE----------EcCCCCCHHHHHHHccCcCcC--CCCceEEEEeChHHHH
Confidence 9999999999999999999999999999999 889999999999999999998 5689999999999888
Q ss_pred HHHHHHHhccC
Q 000129 1732 YYKKFLRLTQN 1742 (2114)
Q Consensus 1732 ~~~~~lRl~~n 1742 (2114)
+++.+.+..+.
T Consensus 139 ~~~~ie~~~~~ 149 (300)
T 3i32_A 139 DVEALERAVGR 149 (300)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhCC
Confidence 88877765544
No 176
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.64 E-value=4.7e-15 Score=195.48 Aligned_cols=341 Identities=19% Similarity=0.184 Sum_probs=204.2
Q ss_pred CCCHHHHHHHHHHH---cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1341 HFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il---~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
.++|.|.+++..++ ..+.++++.||||+|||++|++|++. . .. +++|++||++|+.|+.+++. .+.+.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~---~---~~--~v~i~~pt~~l~~q~~~~~~-~l~~~ 73 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE---V---KP--KVLFVVRTHNEFYPIYRDLT-KIREK 73 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH---H---CS--EEEEEESSGGGHHHHHHHHT-TCCCS
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh---C---CC--eEEEEcCCHHHHHHHHHHHH-HHhhh
Confidence 68999999877654 45678999999999999999999996 2 33 99999999999999998887 56665
Q ss_pred CCcEEEEEcCCcccc------------------------------------------------------hhhccCCcEEE
Q 000129 1418 LGMRVVELTGETAMD------------------------------------------------------LKLLEKGQIII 1443 (2114)
Q Consensus 1418 ~g~~v~~l~G~~~~~------------------------------------------------------~~~l~~~~IIV 1443 (2114)
.++++..+.|..... .+....++|||
T Consensus 74 ~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV 153 (551)
T 3crv_A 74 RNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIA 153 (551)
T ss_dssp SCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEE
T ss_pred cCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEE
Confidence 678888888732210 11234679999
Q ss_pred EChhhHHHHHhhhcccccccceeEEEecccccccCCCCc-----------------------------------------
Q 000129 1444 STPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP----------------------------------------- 1482 (2114)
Q Consensus 1444 ~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~----------------------------------------- 1482 (2114)
+|+..+.....+.. ........++||||||.+.+ -..
T Consensus 154 ~~~~~l~~~~~~~~-~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~ 231 (551)
T 3crv_A 154 LTYPYFFIDRYREF-IDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPD 231 (551)
T ss_dssp EETHHHHCHHHHTT-SCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSC
T ss_pred eCchHhcCHHHHHh-cCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999765432211 11224678999999998765 100
Q ss_pred ------------hH---HHHHH---------------------HH----HHHHh------------------------hc
Q 000129 1483 ------------VL---EVIVS---------------------RM----RYIAS------------------------QV 1498 (2114)
Q Consensus 1483 ------------~l---e~i~s---------------------rl----~~i~~------------------------~~ 1498 (2114)
.. ..+.. .+ ..+.. .+
T Consensus 232 ~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~ 311 (551)
T 3crv_A 232 EKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLL 311 (551)
T ss_dssp SSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGG
T ss_pred ccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHH
Confidence 00 00110 00 00000 11
Q ss_pred CCC-ceEEEEcccCCChhHHHHHhcCCCCc-----eeecCCCCCccCcEEEEec-ccccchHHHHHhcCHHHHHHHHHHh
Q 000129 1499 ENK-IRIVALSTSLANAKDLGEWIGATSHG-----LFNFPPGVRPVPLEIHIQG-VDITNFEARMQAMTKPTFTAIVQHA 1571 (2114)
Q Consensus 1499 ~~~-~riV~lSATl~n~~dla~wl~~~~~~-----~~~f~~~~rpv~l~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~l 1571 (2114)
... ..+|++|||++....+...+|..... .+.++..+ +-...+.+.. .+.+ +..+...+.......+...+
T Consensus 312 ~~~~~svIltSaTL~~~~~~~~~lGl~~~~~~~~~~~~~~spf-~~~~~l~v~~~~~~~-~~~r~~~~~~~l~~~i~~l~ 389 (551)
T 3crv_A 312 NDNELSIILMSGTLPPREYMEKVWGIKRNMLYLDVEREIQKRV-SGSYECYIGVDVTSK-YDMRSDNMWKRYADYLLKIY 389 (551)
T ss_dssp GCTTCEEEEEESSCCCHHHHHHTSCCCSCEEEEEHHHHTTSCC-SCEEEEEEECSCCCC-TTTCCHHHHHHHHHHHHHHH
T ss_pred hccCceEEEEeeCCCcHHHHHHHhCCCCccccccceeecCCcC-CCceEEEEeCCCCCc-cccCCHHHHHHHHHHHHHHH
Confidence 123 68999999999877788888876322 22333333 2223333321 2111 11000001112222222221
Q ss_pred -cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHH
Q 000129 1572 -KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEV 1650 (2114)
Q Consensus 1572 -~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~ 1650 (2114)
...+.++||++|.+..+.++.. ....|..-..+++ +..
T Consensus 390 ~~~~g~~lvlF~Sy~~l~~v~~~--------------------------------------~~~~v~~q~~~~~---~~~ 428 (551)
T 3crv_A 390 FQAKANVLVVFPSYEIMDRVMSR--------------------------------------ISLPKYVESEDSS---VED 428 (551)
T ss_dssp HHCSSEEEEEESCHHHHHHHHTT--------------------------------------CCSSEEECCSSCC---HHH
T ss_pred HhCCCCEEEEecCHHHHHHHHHh--------------------------------------cCCcEEEcCCCCC---HHH
Confidence 2456899999999887766620 1112333333444 345
Q ss_pred HHHHHhcCCceEEEec--CccccccCCC---C---cEEEEEeeeEecC----------------CcCc----CCCCCHhH
Q 000129 1651 VSALFEAGKIKVCVMS--SSMCWGVPLT---A---HLVVVMGTQYYDG----------------QENA----HTDYPVTD 1702 (2114)
Q Consensus 1651 v~~~F~~g~i~VLVaT--~~la~Gvdip---~---~~vVI~gt~~yd~----------------~~~~----~~~~s~~~ 1702 (2114)
+++.|+.+.-.||+|| ..+..|||+| + ..|||.|.++-.. +..+ ..| -...
T Consensus 429 ~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~p-a~~~ 507 (551)
T 3crv_A 429 LYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIP-ALVT 507 (551)
T ss_dssp HHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHH-HHHH
T ss_pred HHHHHHhcCCeEEEEEecceecccccccccCCcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHH-HHHH
Confidence 6777754334899998 5889999999 3 5566666554322 1011 112 3556
Q ss_pred HHHhHcccCCCCCCCceEEEEEeecCcHHHHHHHH
Q 000129 1703 LLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFL 1737 (2114)
Q Consensus 1703 ~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~~~l 1737 (2114)
+.|-+||+-|.. +..|.++++-..-....|.+.+
T Consensus 508 l~Qa~GRlIR~~-~D~G~v~llD~R~~~~~~~~~~ 541 (551)
T 3crv_A 508 IKQAIGRAIRDV-NDKCNVWLLDKRFESLYWKKNL 541 (551)
T ss_dssp HHHHHHTTCCST-TCEEEEEEESGGGGSHHHHHHT
T ss_pred HHHHhccCccCC-CccEEEEEeehhcccchhhhhc
Confidence 779999999964 4577666654443444555554
No 177
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.64 E-value=7.4e-16 Score=171.39 Aligned_cols=119 Identities=13% Similarity=0.124 Sum_probs=103.8
Q ss_pred cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHH
Q 000129 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2114)
Q Consensus 1572 ~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v 1651 (2114)
...+++||||+++..|..++..|.. .+.++..+||+|++.+|..+
T Consensus 29 ~~~~~~lVF~~~~~~~~~l~~~L~~-----------------------------------~~~~~~~~hg~~~~~~r~~~ 73 (172)
T 1t5i_A 29 LEFNQVVIFVKSVQRCIALAQLLVE-----------------------------------QNFPAIAIHRGMPQEERLSR 73 (172)
T ss_dssp SCCSSEEEECSSHHHHHHHHHHHHH-----------------------------------TTCCEEEECTTSCHHHHHHH
T ss_pred CCCCcEEEEECCHHHHHHHHHHHHh-----------------------------------cCCCEEEEECCCCHHHHHHH
Confidence 3567999999999999999876632 24568999999999999999
Q ss_pred HHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcH-
Q 000129 1652 SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRK- 1730 (2114)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~- 1730 (2114)
++.|++|.++|||||+++++|+|+|++.+|| +++.|.+..+|+||+|||||. +..|.|++++.+.+.
T Consensus 74 ~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi----------~~d~p~~~~~~~qr~GR~~R~--g~~g~~~~~~~~~~~~ 141 (172)
T 1t5i_A 74 YQQFKDFQRRILVATNLFGRGMDIERVNIAF----------NYDMPEDSDTYLHRVARAGRF--GTKGLAITFVSDENDA 141 (172)
T ss_dssp HHHHHTTSCSEEEESSCCSTTCCGGGCSEEE----------ESSCCSSHHHHHHHHHHHTGG--GCCCEEEEEECSHHHH
T ss_pred HHHHHCCCCcEEEECCchhcCcchhhCCEEE----------EECCCCCHHHHHHHhcccccC--CCCcEEEEEEcChhHH
Confidence 9999999999999999999999999999999 899999999999999999998 578999999987543
Q ss_pred HHHHHHH
Q 000129 1731 EYYKKFL 1737 (2114)
Q Consensus 1731 ~~~~~~l 1737 (2114)
.+++.+.
T Consensus 142 ~~~~~l~ 148 (172)
T 1t5i_A 142 KILNDVQ 148 (172)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344443
No 178
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.64 E-value=5.7e-16 Score=174.35 Aligned_cols=122 Identities=19% Similarity=0.226 Sum_probs=94.9
Q ss_pred cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHH
Q 000129 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2114)
Q Consensus 1572 ~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v 1651 (2114)
..++++||||+++..|..++..|.. .+.++..+||+|++.+|..+
T Consensus 44 ~~~~k~lVF~~~~~~~~~l~~~L~~-----------------------------------~g~~~~~lhg~~~~~~r~~~ 88 (185)
T 2jgn_A 44 GKDSLTLVFVETKKGADSLEDFLYH-----------------------------------EGYACTSIHGDRSQRDREEA 88 (185)
T ss_dssp -CCSCEEEEESCHHHHHHHHHHHHH-----------------------------------TTCCEEEEC--------CHH
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHH-----------------------------------cCCceEEEeCCCCHHHHHHH
Confidence 4678899999999999998876632 24568999999999999999
Q ss_pred HHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHH
Q 000129 1652 SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE 1731 (2114)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~ 1731 (2114)
++.|++|.++|||||+++++|+|+|++.+|| +++.|.+..+|+||+|||||. +..|.|++++...+..
T Consensus 89 ~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI----------~~d~p~s~~~~~Qr~GR~~R~--g~~g~~~~~~~~~~~~ 156 (185)
T 2jgn_A 89 LHQFRSGKSPILVATAVAARGLDISNVKHVI----------NFDLPSDIEEYVHRIGRTGRV--GNLGLATSFFNERNIN 156 (185)
T ss_dssp HHHHHHTSSSEEEEEC------CCCSBSEEE----------ESSCCSSHHHHHHHHTTBCCT--TSCEEEEEEECGGGGG
T ss_pred HHHHHcCCCeEEEEcChhhcCCCcccCCEEE----------EeCCCCCHHHHHHHccccCCC--CCCcEEEEEEchhhHH
Confidence 9999999999999999999999999999999 789999999999999999998 5789999999988887
Q ss_pred HHHHHHHhc
Q 000129 1732 YYKKFLRLT 1740 (2114)
Q Consensus 1732 ~~~~~lRl~ 1740 (2114)
.++++.+..
T Consensus 157 ~~~~l~~~l 165 (185)
T 2jgn_A 157 ITKDLLDLL 165 (185)
T ss_dssp GHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777544
No 179
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.64 E-value=1e-14 Score=192.24 Aligned_cols=127 Identities=20% Similarity=0.223 Sum_probs=97.1
Q ss_pred CCCHHHHHHHHHH---HcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 495 QLNRVQSRVYKSA---LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~---l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
+++|.|.+++..+ +..+.++++.||||+|||++|++|++.. +.+++|++||++|+.|+.+.+.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~--------------~~~v~i~~pt~~l~~q~~~~~~ 68 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV--------------KPKVLFVVRTHNEFYPIYRDLT 68 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH--------------CSEEEEEESSGGGHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC--------------CCeEEEEcCCHHHHHHHHHHHH
Confidence 6899999977654 4566789999999999999999999971 2389999999999999999998
Q ss_pred HhhccCCcEEEEEeCCCccC------------------------------------------------------hhhhcc
Q 000129 572 NRLQMYDVKVRELSGDQTLT------------------------------------------------------RQQIEE 597 (2114)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~------------------------------------------------------~~~~~~ 597 (2114)
.+....++++..+.|..+.- +.....
T Consensus 69 ~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~ 148 (551)
T 3crv_A 69 KIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYK 148 (551)
T ss_dssp TCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGG
T ss_pred HHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhc
Confidence 77666688888888743210 111246
Q ss_pred ceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccccccc
Q 000129 598 TQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (2114)
Q Consensus 598 ~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l~d 637 (2114)
++|||+|+..+ +...+... .......++||||||.|.+
T Consensus 149 adIVV~~~~~l~~~~~~~~~--~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 149 ADVIALTYPYFFIDRYREFI--DIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp CSEEEEETHHHHCHHHHTTS--CCCSTTEEEEETTGGGGGG
T ss_pred CCEEEeCchHhcCHHHHHhc--CCCcCCeEEEEecccchHH
Confidence 89999999986 44444432 2224568999999998865
No 180
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.63 E-value=1.6e-15 Score=171.32 Aligned_cols=108 Identities=20% Similarity=0.328 Sum_probs=94.9
Q ss_pred CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHH
Q 000129 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (2114)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v 812 (2114)
++++||||++++.+..++..|...+ ..+..+||+|++.+|..+
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~g-------------------------------------~~~~~lhg~~~~~~R~~~ 96 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLKG-------------------------------------VEAVAIHGGKDQEERTKA 96 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHHT-------------------------------------CCEEEECTTSCHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcC-------------------------------------CcEEEEeCCCCHHHHHHH
Confidence 5689999999999999999987643 236778999999999999
Q ss_pred HHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCC
Q 000129 813 EDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889 (2114)
Q Consensus 813 ~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~ 889 (2114)
++.|++|.++|||||+++++|+|+|++++||+ ||++. +..+|+||+|||||.| ..|.++++++..
T Consensus 97 l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~----~d~p~------~~~~~~qr~GR~gR~g--~~g~~i~l~~~~ 161 (191)
T 2p6n_A 97 IEAFREGKKDVLVATDVASKGLDFPAIQHVIN----YDMPE------EIENYVHRIGRTGCSG--NTGIATTFINKA 161 (191)
T ss_dssp HHHHHHTSCSEEEECHHHHTTCCCCCCSEEEE----SSCCS------SHHHHHHHHTTSCC-----CCEEEEEECTT
T ss_pred HHHHhcCCCEEEEEcCchhcCCCcccCCEEEE----eCCCC------CHHHHHHHhCccccCC--CCcEEEEEEcCc
Confidence 99999999999999999999999999999999 66664 7889999999999987 679999998875
No 181
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.60 E-value=3.8e-15 Score=168.33 Aligned_cols=118 Identities=16% Similarity=0.227 Sum_probs=100.8
Q ss_pred CCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHH
Q 000129 1573 NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVS 1652 (2114)
Q Consensus 1573 ~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~ 1652 (2114)
.++++||||+++..+..++..|.. .+..+..+||+|++.+|..++
T Consensus 53 ~~~~~lVF~~~~~~~~~l~~~L~~-----------------------------------~g~~~~~lhg~~~~~~R~~~l 97 (191)
T 2p6n_A 53 TPPPVLIFAEKKADVDAIHEYLLL-----------------------------------KGVEAVAIHGGKDQEERTKAI 97 (191)
T ss_dssp SCSCEEEECSCHHHHHHHHHHHHH-----------------------------------HTCCEEEECTTSCHHHHHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHH-----------------------------------cCCcEEEEeCCCCHHHHHHHH
Confidence 356899999999999998876632 245689999999999999999
Q ss_pred HHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecC-cHH
Q 000129 1653 ALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP-RKE 1731 (2114)
Q Consensus 1653 ~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~-~~~ 1731 (2114)
+.|++|.++|||||+++++|+|+|++.+|| +++.|.+..+|+||+|||||. +..|.|++++... +..
T Consensus 98 ~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI----------~~d~p~~~~~~~qr~GR~gR~--g~~g~~i~l~~~~~~~~ 165 (191)
T 2p6n_A 98 EAFREGKKDVLVATDVASKGLDFPAIQHVI----------NYDMPEEIENYVHRIGRTGCS--GNTGIATTFINKACDES 165 (191)
T ss_dssp HHHHHTSCSEEEECHHHHTTCCCCCCSEEE----------ESSCCSSHHHHHHHHTTSCC-----CCEEEEEECTTSCHH
T ss_pred HHHhcCCCEEEEEcCchhcCCCcccCCEEE----------EeCCCCCHHHHHHHhCccccC--CCCcEEEEEEcCchhHH
Confidence 999999999999999999999999999999 889999999999999999998 5789999999876 444
Q ss_pred HHHHHH
Q 000129 1732 YYKKFL 1737 (2114)
Q Consensus 1732 ~~~~~l 1737 (2114)
+.+.+.
T Consensus 166 ~~~~l~ 171 (191)
T 2p6n_A 166 VLMDLK 171 (191)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 182
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.34 E-value=2.3e-16 Score=175.31 Aligned_cols=115 Identities=20% Similarity=0.290 Sum_probs=98.8
Q ss_pred CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHH
Q 000129 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (2114)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~ 811 (2114)
.++++||||++++.+..++..|...+ .++..+||+|++.+|..
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~~-------------------------------------~~~~~~~g~~~~~~r~~ 71 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREAG-------------------------------------INNCYLEGEMVQGKRNE 71 (170)
Confidence 46789999999999999998886542 23567799999999999
Q ss_pred HHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcH
Q 000129 812 VEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891 (2114)
Q Consensus 812 v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~ 891 (2114)
+++.|++|.++|||||+++++|+|+|++++||+++.++ +..+|+||+|||||.| ..|.++++++..+.
T Consensus 72 ~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~----------~~~~~~qr~GR~~R~g--~~g~~~~~~~~~~~ 139 (170)
T 2yjt_D 72 AIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPR----------SGDTYLHRIGRTARAG--RKGTAISLVEAHDH 139 (170)
Confidence 99999999999999999999999999999999944443 5567999999999987 67999999988775
Q ss_pred HHHH
Q 000129 892 RYYL 895 (2114)
Q Consensus 892 ~~~~ 895 (2114)
..+.
T Consensus 140 ~~~~ 143 (170)
T 2yjt_D 140 LLLG 143 (170)
Confidence 5544
No 183
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.31 E-value=4.1e-16 Score=173.23 Aligned_cols=119 Identities=19% Similarity=0.217 Sum_probs=105.0
Q ss_pred CCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHH
Q 000129 1573 NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVS 1652 (2114)
Q Consensus 1573 ~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~ 1652 (2114)
.++++||||+++..|..++..|.. .+.++..+||+|++.+|..++
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~-----------------------------------~~~~~~~~~g~~~~~~r~~~~ 73 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLRE-----------------------------------AGINNCYLEGEMVQGKRNEAI 73 (170)
Confidence 457899999999999888865521 244688999999999999999
Q ss_pred HHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHH
Q 000129 1653 ALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEY 1732 (2114)
Q Consensus 1653 ~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~ 1732 (2114)
+.|++|.++|||||+++++|+|+|++.+|| +++.|.+..+|+||+|||||. +..|.|++++...+...
T Consensus 74 ~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi----------~~~~p~~~~~~~qr~GR~~R~--g~~g~~~~~~~~~~~~~ 141 (170)
T 2yjt_D 74 KRLTEGRVNVLVATDVAARGIDIPDVSHVF----------NFDMPRSGDTYLHRIGRTARA--GRKGTAISLVEAHDHLL 141 (170)
Confidence 999999999999999999999999999999 889999999999999999997 57899999998887776
Q ss_pred HHHHHH
Q 000129 1733 YKKFLR 1738 (2114)
Q Consensus 1733 ~~~~lR 1738 (2114)
++++.+
T Consensus 142 ~~~~~~ 147 (170)
T 2yjt_D 142 LGKVGR 147 (170)
Confidence 665554
No 184
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.53 E-value=2.5e-14 Score=167.61 Aligned_cols=140 Identities=21% Similarity=0.226 Sum_probs=105.9
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000129 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g 1419 (2114)
..++++|.+++..+++++ ++++++|||+|||.++..++... ++ +++|++|+++|+.|+++.+++ | +
T Consensus 92 ~~l~~~Q~~ai~~~~~~~-~~ll~~~tG~GKT~~a~~~~~~~------~~--~~liv~P~~~L~~q~~~~~~~-~----~ 157 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDK-RGCIVLPTGSGKTHVAMAAINEL------ST--PTLIVVPTLALAEQWKERLGI-F----G 157 (237)
T ss_dssp CCCCHHHHHHHHHHTTTS-EEEEEESSSTTHHHHHHHHHHHS------CS--CEEEEESSHHHHHHHHHHHGG-G----C
T ss_pred CCcCHHHHHHHHHHHhCC-CEEEEeCCCCCHHHHHHHHHHHc------CC--CEEEEeCCHHHHHHHHHHHHh-C----C
Confidence 479999999999988754 59999999999999998776642 33 899999999999999988874 4 5
Q ss_pred cE-EEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhc
Q 000129 1420 MR-VVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQV 1498 (2114)
Q Consensus 1420 ~~-v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~ 1498 (2114)
.+ +..++|+... ..+|+|+||+.+...... ....+++|||||+|++.+.. ++.++ ..+
T Consensus 158 ~~~v~~~~g~~~~------~~~i~v~T~~~l~~~~~~-----~~~~~~llIiDEaH~l~~~~---~~~i~-------~~~ 216 (237)
T 2fz4_A 158 EEYVGEFSGRIKE------LKPLTVSTYDSAYVNAEK-----LGNRFMLLIFDEVHHLPAES---YVQIA-------QMS 216 (237)
T ss_dssp GGGEEEESSSCBC------CCSEEEEEHHHHHHTHHH-----HTTTCSEEEEECSSCCCTTT---HHHHH-------HTC
T ss_pred CCeEEEEeCCCCC------cCCEEEEeHHHHHhhHHH-----hcccCCEEEEECCccCCChH---HHHHH-------Hhc
Confidence 67 8888887642 568999999986544432 12458999999999997543 32222 222
Q ss_pred CCCceEEEEcccCCChh
Q 000129 1499 ENKIRIVALSTSLANAK 1515 (2114)
Q Consensus 1499 ~~~~riV~lSATl~n~~ 1515 (2114)
...++++||||+.+.+
T Consensus 217 -~~~~~l~LSATp~r~D 232 (237)
T 2fz4_A 217 -IAPFRLGLTATFERED 232 (237)
T ss_dssp -CCSEEEEEEESCC---
T ss_pred -cCCEEEEEecCCCCCC
Confidence 3678899999997654
No 185
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.50 E-value=4.4e-13 Score=177.81 Aligned_cols=82 Identities=18% Similarity=0.326 Sum_probs=64.5
Q ss_pred CCCHHHHHHHHHHH---cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1341 HFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il---~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
.++|.|.+....++ ..+.++++.||||+|||++|++|++..+... +. +++|++||++|+.|+.+++. ++...
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~--~~--kvli~t~T~~l~~Qi~~el~-~l~~~ 77 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER--KL--KVLYLVRTNSQEEQVIKELR-SLSST 77 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH--TC--EEEEEESSHHHHHHHHHHHH-HHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc--CC--eEEEECCCHHHHHHHHHHHH-HHhhc
Confidence 57999999987653 4567799999999999999999999987652 33 99999999999999999988 45443
Q ss_pred CCcEEEEEcC
Q 000129 1418 LGMRVVELTG 1427 (2114)
Q Consensus 1418 ~g~~v~~l~G 1427 (2114)
.++++..+.|
T Consensus 78 ~~~~~~~l~g 87 (620)
T 4a15_A 78 MKIRAIPMQG 87 (620)
T ss_dssp SCCCEEECCC
T ss_pred cCeEEEEEEC
Confidence 3556655544
No 186
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.49 E-value=4.1e-13 Score=178.05 Aligned_cols=82 Identities=21% Similarity=0.302 Sum_probs=66.6
Q ss_pred CCCHHHHHHHHHH---HcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 495 QLNRVQSRVYKSA---LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~---l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
+++|.|.+.+..+ +..+.++++.||||+|||++|++|++..+... +.+++|++||++|+.|+.+.+.
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~----------~~kvli~t~T~~l~~Qi~~el~ 72 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER----------KLKVLYLVRTNSQEEQVIKELR 72 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH----------TCEEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc----------CCeEEEECCCHHHHHHHHHHHH
Confidence 5799999988744 45567899999999999999999999987643 2389999999999999999998
Q ss_pred HhhccCCcEEEEEeC
Q 000129 572 NRLQMYDVKVRELSG 586 (2114)
Q Consensus 572 ~~~~~~gi~v~~l~G 586 (2114)
......++++..++|
T Consensus 73 ~l~~~~~~~~~~l~g 87 (620)
T 4a15_A 73 SLSSTMKIRAIPMQG 87 (620)
T ss_dssp HHHHHSCCCEEECCC
T ss_pred HHhhccCeEEEEEEC
Confidence 766555677766665
No 187
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.10 E-value=2.3e-10 Score=136.22 Aligned_cols=112 Identities=14% Similarity=0.138 Sum_probs=81.3
Q ss_pred CCCeEEEEecChHHHHHHHHHHHHH-hhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHH
Q 000129 732 GKHQVLIFVHSRKETAKTARAIRDT-ALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ 810 (2114)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~-~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~ 810 (2114)
.+.++||||+++..+..++..|... + ..+..+||+++..+|.
T Consensus 111 ~~~kvlIFs~~~~~~~~l~~~L~~~~g-------------------------------------~~~~~l~G~~~~~~R~ 153 (271)
T 1z5z_A 111 EGDKIAIFTQFVDMGKIIRNIIEKELN-------------------------------------TEVPFLYGELSKKERD 153 (271)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHHC-------------------------------------SCCCEECTTSCHHHHH
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhcC-------------------------------------CcEEEEECCCCHHHHH
Confidence 4789999999999999888888653 2 2245679999999999
Q ss_pred HHHHHHhCC-Cce-EEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCC
Q 000129 811 LVEDLFGDG-HVQ-VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2114)
Q Consensus 811 ~v~~~F~~g-~i~-VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2114)
.+++.|++| .++ +|+||.++++|+|++++++||+++.+++|.. |.|++||++|.|..+...++.+...
T Consensus 154 ~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~----------~~Q~~gR~~R~Gq~~~v~v~~li~~ 223 (271)
T 1z5z_A 154 DIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAV----------EDQATDRVYRIGQTRNVIVHKLISV 223 (271)
T ss_dssp HHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTT----------C--------------CCEEEEEEET
T ss_pred HHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEEECCCCChhH----------HHHHHHhccccCCCCceEEEEEeeC
Confidence 999999998 777 7899999999999999999999777777764 9999999999996666566666665
Q ss_pred Cc
Q 000129 889 SE 890 (2114)
Q Consensus 889 ~e 890 (2114)
..
T Consensus 224 ~T 225 (271)
T 1z5z_A 224 GT 225 (271)
T ss_dssp TS
T ss_pred CC
Confidence 54
No 188
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.09 E-value=3.4e-10 Score=134.81 Aligned_cols=114 Identities=13% Similarity=0.096 Sum_probs=84.5
Q ss_pred cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHH
Q 000129 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2114)
Q Consensus 1572 ~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v 1651 (2114)
..+.++||||+++..+..++..|.. ..+..+..+||+++..+|..+
T Consensus 110 ~~~~kvlIFs~~~~~~~~l~~~L~~----------------------------------~~g~~~~~l~G~~~~~~R~~~ 155 (271)
T 1z5z_A 110 DEGDKIAIFTQFVDMGKIIRNIIEK----------------------------------ELNTEVPFLYGELSKKERDDI 155 (271)
T ss_dssp HTTCCEEEEESCHHHHHHHHHHHHH----------------------------------HHCSCCCEECTTSCHHHHHHH
T ss_pred hCCCeEEEEeccHHHHHHHHHHHHH----------------------------------hcCCcEEEEECCCCHHHHHHH
Confidence 4688999999999988777755421 134567889999999999999
Q ss_pred HHHHhcC-Cce-EEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCc
Q 000129 1652 SALFEAG-KIK-VCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1652 ~~~F~~g-~i~-VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~ 1729 (2114)
++.|++| .++ +|+||+++++|+|++++.+|| +++.|.++..+.|++||++|.|......++.++....
T Consensus 156 i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI----------~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~T 225 (271)
T 1z5z_A 156 ISKFQNNPSVKFIVLSVKAGGFGINLTSANRVI----------HFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 225 (271)
T ss_dssp HHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEE----------ECSCCSCTTTC--------------CCEEEEEEETTS
T ss_pred HHHhcCCCCCCEEEEehhhhcCCcCcccCCEEE----------EECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCC
Confidence 9999999 777 799999999999999999999 8999999999999999999997666666777776653
No 189
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.90 E-value=1e-05 Score=107.20 Aligned_cols=144 Identities=18% Similarity=0.256 Sum_probs=80.9
Q ss_pred CHHHHHHHHHHHcCCCcEEEEccCCCchH--HHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 497 NRVQSRVYKSALSSADNILLCAPTGAGKT--NVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 497 ~~iQ~~~i~~~l~~~~nvlv~APTGsGKT--~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
++.|.++++.++.+ ..++++||+|+||| ..++++.+..+... .+.++++++||..+|.++.+.+....
T Consensus 151 ~~~Q~~Ai~~~l~~-~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~---------~~~~vll~APTg~AA~~L~e~~~~~~ 220 (608)
T 1w36_D 151 INWQKVAAAVALTR-RISVISGGPGTGKTTTVAKLLAALIQMADG---------ERCRIRLAAPTGKAAARLTESLGKAL 220 (608)
T ss_dssp CCHHHHHHHHHHTB-SEEEEECCTTSTHHHHHHHHHHHHHHTCSS---------CCCCEEEEBSSHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHhcC-CCEEEEeCCCCCHHHHHHHHHHHHHHhhhc---------CCCeEEEEeCChhHHHHHHHHHHHHH
Confidence 78999999998864 56999999999999 45556665543211 23479999999999999988877655
Q ss_pred ccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHH
Q 000129 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQI 654 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~ 654 (2114)
..+++...... ........ -..++-.+|+... + +.... .. ..+++|||||++++. .+.++.++.
T Consensus 221 ~~l~l~~~~~~-~~~~~~~T--ih~ll~~~~~~~~-~-~~~~~-~~-l~~d~lIIDEAsml~---~~~~~~Ll~------ 284 (608)
T 1w36_D 221 RQLPLTDEQKK-RIPEDAST--LHRLLGAQPGSQR-L-RHHAG-NP-LHLDVLVVDEASMID---LPMMSRLID------ 284 (608)
T ss_dssp HHSSCCSCCCC-SCSCCCBT--TTSCC-------------CTT-SC-CSCSEEEECSGGGCB---HHHHHHHHH------
T ss_pred hcCCCCHHHHh-ccchhhhh--hHhhhccCCCchH-H-HhccC-CC-CCCCEEEEechhhCC---HHHHHHHHH------
Confidence 44443211100 00000000 0122223343211 1 11111 11 268999999999764 223333332
Q ss_pred hhccccccEEEEc
Q 000129 655 ETTKEHIRLVGLS 667 (2114)
Q Consensus 655 ~~~~~~~riv~lS 667 (2114)
..+...|+|++.
T Consensus 285 -~l~~~~~liLvG 296 (608)
T 1w36_D 285 -ALPDHARVIFLG 296 (608)
T ss_dssp -TCCTTCEEEEEE
T ss_pred -hCCCCCEEEEEc
Confidence 235567777764
No 190
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.75 E-value=4.6e-05 Score=101.04 Aligned_cols=145 Identities=17% Similarity=0.170 Sum_probs=80.4
Q ss_pred CHHHHHHHHHHHcCCCcEEEEecCCCchH--HHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1343 NPIQTQVFTVLYNTDDNVLVAAPTGSGKT--ICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1343 ~~iQ~q~~~~il~~~~nvli~ApTGSGKT--l~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
++.|.+++..++. +..+++.||+||||| +.+.++.+..+.. ..+.++++++||..+|.++.+.+...... +++
T Consensus 151 ~~~Q~~Ai~~~l~-~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~---~~~~~vll~APTg~AA~~L~e~~~~~~~~-l~l 225 (608)
T 1w36_D 151 INWQKVAAAVALT-RRISVISGGPGTGKTTTVAKLLAALIQMAD---GERCRIRLAAPTGKAAARLTESLGKALRQ-LPL 225 (608)
T ss_dssp CCHHHHHHHHHHT-BSEEEEECCTTSTHHHHHHHHHHHHHHTCS---SCCCCEEEEBSSHHHHHHHHHHHTHHHHH-SSC
T ss_pred CHHHHHHHHHHhc-CCCEEEEeCCCCCHHHHHHHHHHHHHHhhh---cCCCeEEEEeCChhHHHHHHHHHHHHHhc-CCC
Confidence 7899999999986 566999999999999 4455555554322 22338999999999999988776532221 222
Q ss_pred EEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCC
Q 000129 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVEN 1500 (2114)
Q Consensus 1421 ~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~ 1500 (2114)
..... .........+ ..++-.+|+... .+.. ......++++||||++++.. ..+..+...++.
T Consensus 226 ~~~~~-~~~~~~~~Ti--h~ll~~~~~~~~--~~~~--~~~~l~~d~lIIDEAsml~~----------~~~~~Ll~~l~~ 288 (608)
T 1w36_D 226 TDEQK-KRIPEDASTL--HRLLGAQPGSQR--LRHH--AGNPLHLDVLVVDEASMIDL----------PMMSRLIDALPD 288 (608)
T ss_dssp CSCCC-CSCSCCCBTT--TSCC-------------C--TTSCCSCSEEEECSGGGCBH----------HHHHHHHHTCCT
T ss_pred CHHHH-hccchhhhhh--HhhhccCCCchH--HHhc--cCCCCCCCEEEEechhhCCH----------HHHHHHHHhCCC
Confidence 11000 0000000000 022223343211 1111 11123789999999997741 122233344567
Q ss_pred CceEEEEcc
Q 000129 1501 KIRIVALST 1509 (2114)
Q Consensus 1501 ~~riV~lSA 1509 (2114)
..|+|++.-
T Consensus 289 ~~~liLvGD 297 (608)
T 1w36_D 289 HARVIFLGD 297 (608)
T ss_dssp TCEEEEEEC
T ss_pred CCEEEEEcc
Confidence 788888763
No 191
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.57 E-value=0.00013 Score=98.01 Aligned_cols=68 Identities=31% Similarity=0.388 Sum_probs=57.3
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000129 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (2114)
..||+-|.+|+..++..++-.||.||.|+|||.+..-.|.+.+..+ .+|++++||..-|.++.+++..
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~-----------~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQG-----------LKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTT-----------CCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCC-----------CeEEEEcCchHHHHHHHHHHHh
Confidence 4689999999999998777789999999999998766666555432 3799999999999999988865
No 192
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.49 E-value=0.00017 Score=96.80 Aligned_cols=67 Identities=15% Similarity=0.210 Sum_probs=56.7
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHH
Q 000129 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~ 1411 (2114)
..+|+-|.+|+..++..++-.||.||+|||||.+..-.|.+.+.. +. ++++++||..-|+++..++.
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~---~~--~ILv~a~TN~AvD~i~erL~ 254 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQ---GL--KVLCCAPSNIAVDNLVERLA 254 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHT---TC--CEEEEESSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhC---CC--eEEEEcCchHHHHHHHHHHH
Confidence 479999999999999877778999999999998876555555543 34 89999999999999998876
No 193
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.48 E-value=0.00042 Score=88.93 Aligned_cols=68 Identities=19% Similarity=0.272 Sum_probs=51.9
Q ss_pred CCCCCCHHHHHHHHHHHcC----CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHH
Q 000129 1338 GFKHFNPIQTQVFTVLYNT----DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~----~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~ 1409 (2114)
.|..+|+-|.+++..++.. +.+++|.||.|||||.+. ..++..+... ... ++++++||...+..+...
T Consensus 22 ~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~-~~~--~il~~a~T~~Aa~~l~~~ 93 (459)
T 3upu_A 22 TFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIST-GET--GIILAAPTHAAKKILSKL 93 (459)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHT-TCC--CEEEEESSHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhc-CCc--eEEEecCcHHHHHHHHhh
Confidence 3889999999999987543 458999999999999776 4555556552 222 689999999888776553
No 194
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.34 E-value=0.0035 Score=84.29 Aligned_cols=82 Identities=24% Similarity=0.269 Sum_probs=63.2
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHh
Q 000129 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~ 573 (2114)
..||+-|.+++. ..+.+++|.|+.|||||.+..--+.+.+..+.. .+.+++++++|+..+.++.+++.+.
T Consensus 8 ~~Ln~~Q~~av~---~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~-------~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 8 DSLNDKQREAVA---APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENC-------SPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TTCCHHHHHHHT---CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCC-------CGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHh---CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCC-------ChhhEEEEeccHHHHHHHHHHHHHH
Confidence 479999999997 345679999999999999987777776654321 2347999999999999999999987
Q ss_pred hcc--CCcEEEEEe
Q 000129 574 LQM--YDVKVRELS 585 (2114)
Q Consensus 574 ~~~--~gi~v~~l~ 585 (2114)
++. .++.|..++
T Consensus 78 ~~~~~~~~~v~Tfh 91 (647)
T 3lfu_A 78 MGTSQGGMWVGTFH 91 (647)
T ss_dssp HCSCCTTCEEEEHH
T ss_pred hccccCCcEEEcHH
Confidence 653 345555544
No 195
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.29 E-value=0.00057 Score=87.72 Aligned_cols=69 Identities=17% Similarity=0.277 Sum_probs=51.8
Q ss_pred CCCCCCHHHHHHHHHHHcC----CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHH
Q 000129 492 GMTQLNRVQSRVYKSALSS----ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (2114)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~----~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~ 567 (2114)
.|..||+-|.+++..++.. +.+++|.||.|+|||.+.. .++..+.... ...+++++||...+.++.
T Consensus 22 ~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~-~~~~~l~~~~---------~~~il~~a~T~~Aa~~l~ 91 (459)
T 3upu_A 22 TFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTK-FIIEALISTG---------ETGIILAAPTHAAKKILS 91 (459)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHH-HHHHHHHHTT---------CCCEEEEESSHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHH-HHHHHHHhcC---------CceEEEecCcHHHHHHHH
Confidence 5789999999999976543 4489999999999997664 4444444321 125899999999888776
Q ss_pred HHH
Q 000129 568 GNL 570 (2114)
Q Consensus 568 ~~~ 570 (2114)
+.+
T Consensus 92 ~~~ 94 (459)
T 3upu_A 92 KLS 94 (459)
T ss_dssp HHH
T ss_pred hhh
Confidence 654
No 196
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.19 E-value=0.001 Score=88.56 Aligned_cols=68 Identities=19% Similarity=0.282 Sum_probs=54.0
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHH
Q 000129 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~ 1411 (2114)
+..+|+.|.+|+..++. +..++|.||+|||||.+..- ++..+.. ..+. ++++++||...+.++..++.
T Consensus 178 ~~~ln~~Q~~av~~~l~-~~~~li~GppGTGKT~~~~~-~i~~l~~-~~~~--~ilv~a~tn~A~~~l~~~l~ 245 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQ-RPLSLIQGPPGTGKTVTSAT-IVYHLAR-QGNG--PVLVCAPSNIAVDQLTEKIH 245 (624)
T ss_dssp SCCCCHHHHHHHHHHHT-CSEEEEECCTTSCHHHHHHH-HHHHHHT-SSSC--CEEEEESSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhc-CCCeEEECCCCCCHHHHHHH-HHHHHHH-cCCC--eEEEEeCcHHHHHHHHHHHH
Confidence 56799999999999886 55689999999999987643 3344443 1234 89999999999999988776
No 197
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.18 E-value=0.00093 Score=90.90 Aligned_cols=71 Identities=24% Similarity=0.338 Sum_probs=55.5
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
.+..||+.|.+|+..++. +..++|.||.|+|||.+..-.+.+.+... +.++++++||...|.++.+++.
T Consensus 357 ~~~~Ln~~Q~~Av~~~l~-~~~~lI~GppGTGKT~~i~~~i~~l~~~~----------~~~ILv~a~tn~A~d~l~~rL~ 425 (802)
T 2xzl_A 357 NFAQLNSSQSNAVSHVLQ-RPLSLIQGPPGTGKTVTSATIVYHLSKIH----------KDRILVCAPSNVAVDHLAAKLR 425 (802)
T ss_dssp TSCCCCHHHHHHHHHHTT-CSEEEEECSTTSSHHHHHHHHHHHHHHHH----------CCCEEEEESSHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHhc-CCCEEEECCCCCCHHHHHHHHHHHHHhCC----------CCeEEEEcCcHHHHHHHHHHHH
Confidence 456899999999998875 45689999999999988655444333221 2379999999999999999887
Q ss_pred Hh
Q 000129 572 NR 573 (2114)
Q Consensus 572 ~~ 573 (2114)
+.
T Consensus 426 ~~ 427 (802)
T 2xzl_A 426 DL 427 (802)
T ss_dssp HT
T ss_pred hh
Confidence 64
No 198
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.17 E-value=0.00084 Score=89.46 Aligned_cols=70 Identities=26% Similarity=0.370 Sum_probs=54.5
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
....+|+.|.+|+..++.+ ..++|.||+|+|||.+..-.+ ..+... .+.++++++||...|.++.+++.
T Consensus 177 ~~~~ln~~Q~~av~~~l~~-~~~li~GppGTGKT~~~~~~i-~~l~~~---------~~~~ilv~a~tn~A~~~l~~~l~ 245 (624)
T 2gk6_A 177 GLPDLNHSQVYAVKTVLQR-PLSLIQGPPGTGKTVTSATIV-YHLARQ---------GNGPVLVCAPSNIAVDQLTEKIH 245 (624)
T ss_dssp TSCCCCHHHHHHHHHHHTC-SEEEEECCTTSCHHHHHHHHH-HHHHTS---------SSCCEEEEESSHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHhcC-CCeEEECCCCCCHHHHHHHHH-HHHHHc---------CCCeEEEEeCcHHHHHHHHHHHH
Confidence 3567999999999998864 568999999999998765443 333321 12379999999999999988876
Q ss_pred H
Q 000129 572 N 572 (2114)
Q Consensus 572 ~ 572 (2114)
+
T Consensus 246 ~ 246 (624)
T 2gk6_A 246 Q 246 (624)
T ss_dssp T
T ss_pred h
Confidence 5
No 199
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.11 E-value=0.0013 Score=89.37 Aligned_cols=69 Identities=19% Similarity=0.271 Sum_probs=54.7
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHH
Q 000129 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEI 1412 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~ 1412 (2114)
+..+|+.|.+|+..++. +..++|.||+|||||.+..-.+...+.. .+. ++++++||...+.++..++.+
T Consensus 358 ~~~Ln~~Q~~Av~~~l~-~~~~lI~GppGTGKT~~i~~~i~~l~~~--~~~--~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQ-RPLSLIQGPPGTGKTVTSATIVYHLSKI--HKD--RILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp SCCCCHHHHHHHHHHTT-CSEEEEECSTTSSHHHHHHHHHHHHHHH--HCC--CEEEEESSHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHhc-CCCEEEECCCCCCHHHHHHHHHHHHHhC--CCC--eEEEEcCcHHHHHHHHHHHHh
Confidence 56899999999999986 4568999999999998764444333322 234 899999999999999998873
No 200
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.01 E-value=0.0023 Score=83.95 Aligned_cols=62 Identities=18% Similarity=0.131 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHH
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYR 1408 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~ 1408 (2114)
.+++.|.+++..++. +..++|.||.|||||.+. ..++..+.. .+. ++++++||...+..+.+
T Consensus 189 ~L~~~Q~~Av~~~~~-~~~~~I~G~pGTGKTt~i-~~l~~~l~~--~g~--~Vl~~ApT~~Aa~~L~e 250 (574)
T 3e1s_A 189 GLSEEQASVLDQLAG-HRLVVLTGGPGTGKSTTT-KAVADLAES--LGL--EVGLCAPTGKAARRLGE 250 (574)
T ss_dssp TCCHHHHHHHHHHTT-CSEEEEECCTTSCHHHHH-HHHHHHHHH--TTC--CEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-CCEEEEEcCCCCCHHHHH-HHHHHHHHh--cCC--eEEEecCcHHHHHHhHh
Confidence 689999999999886 567999999999999875 445555554 233 89999999998877654
No 201
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.98 E-value=0.0017 Score=88.15 Aligned_cols=70 Identities=27% Similarity=0.386 Sum_probs=54.2
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
....||+.|.+|+..++.+ ..++|.||.|+|||.+..- ++..+... .+.++++++||...|.++.+++.
T Consensus 353 ~~~~Ln~~Q~~Av~~~l~~-~~~lI~GppGTGKT~ti~~-~i~~l~~~---------~~~~ilv~a~tn~A~~~l~~~l~ 421 (800)
T 2wjy_A 353 GLPDLNHSQVYAVKTVLQR-PLSLIQGPPGTGKTVTSAT-IVYHLARQ---------GNGPVLVCAPSNIAVDQLTEKIH 421 (800)
T ss_dssp TSCCCCHHHHHHHHHHHTS-SEEEEECCTTSCHHHHHHH-HHHHHHTT---------CSSCEEEEESSHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHhccC-CeEEEEcCCCCCHHHHHHH-HHHHHHHc---------CCCcEEEEcCcHHHHHHHHHHHH
Confidence 3457999999999998864 5689999999999987643 33444331 12379999999999999988876
Q ss_pred H
Q 000129 572 N 572 (2114)
Q Consensus 572 ~ 572 (2114)
+
T Consensus 422 ~ 422 (800)
T 2wjy_A 422 Q 422 (800)
T ss_dssp T
T ss_pred H
Confidence 5
No 202
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.91 E-value=0.0022 Score=87.09 Aligned_cols=68 Identities=19% Similarity=0.296 Sum_probs=53.9
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHH
Q 000129 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~ 1411 (2114)
...+|+.|.+|+..++. +..++|.||+|+|||.+.. .++..+.. ..+. ++++++||...+.++..++.
T Consensus 354 ~~~Ln~~Q~~Av~~~l~-~~~~lI~GppGTGKT~ti~-~~i~~l~~-~~~~--~ilv~a~tn~A~~~l~~~l~ 421 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQ-RPLSLIQGPPGTGKTVTSA-TIVYHLAR-QGNG--PVLVCAPSNIAVDQLTEKIH 421 (800)
T ss_dssp SCCCCHHHHHHHHHHHT-SSEEEEECCTTSCHHHHHH-HHHHHHHT-TCSS--CEEEEESSHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHhcc-CCeEEEEcCCCCCHHHHHH-HHHHHHHH-cCCC--cEEEEcCcHHHHHHHHHHHH
Confidence 56799999999999886 4568999999999998764 34444443 1233 89999999999999888776
No 203
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.84 E-value=0.0025 Score=83.60 Aligned_cols=64 Identities=14% Similarity=0.143 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.|++.|.+++..++. +..++|.||.|+|||.+.. .++..+... +.++++++||...+..+.+..
T Consensus 189 ~L~~~Q~~Av~~~~~-~~~~~I~G~pGTGKTt~i~-~l~~~l~~~----------g~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 189 GLSEEQASVLDQLAG-HRLVVLTGGPGTGKSTTTK-AVADLAESL----------GLEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp TCCHHHHHHHHHHTT-CSEEEEECCTTSCHHHHHH-HHHHHHHHT----------TCCEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-CCEEEEEcCCCCCHHHHHH-HHHHHHHhc----------CCeEEEecCcHHHHHHhHhhh
Confidence 689999999998875 4679999999999998743 344444332 237999999999888776543
No 204
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.83 E-value=0.035 Score=61.18 Aligned_cols=41 Identities=22% Similarity=0.303 Sum_probs=30.1
Q ss_pred cCCCCCCCHHHHHHHHHHH--------cCCCcEEEEccCCCchHHHHHH
Q 000129 490 FKGMTQLNRVQSRVYKSAL--------SSADNILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 490 f~g~~~l~~iQ~~~i~~~l--------~~~~nvlv~APTGsGKT~~a~l 530 (2114)
|.+|..-++.|.+++..+. ..+++++++||+|+|||..+..
T Consensus 9 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~ 57 (180)
T 3ec2_A 9 LDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVA 57 (180)
T ss_dssp SSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHH
T ss_pred cccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHH
Confidence 4445444678888887664 2457899999999999987643
No 205
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.71 E-value=0.048 Score=60.05 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHH--------cCCCcEEEEecCCCchHHHHHHHHHHHhh
Q 000129 1343 NPIQTQVFTVLY--------NTDDNVLVAAPTGSGKTICSEFAILRNHQ 1383 (2114)
Q Consensus 1343 ~~iQ~q~~~~il--------~~~~nvli~ApTGSGKTl~~~l~il~~l~ 1383 (2114)
++.|.+++..+. ..+.++++.||+|+|||..+. ++...+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~-~i~~~~~ 63 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV-ATLKAIY 63 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH-HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH-HHHHHHH
Confidence 567888877653 246789999999999998773 4444443
No 206
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=95.46 E-value=0.068 Score=70.63 Aligned_cols=73 Identities=19% Similarity=0.219 Sum_probs=56.5
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.|+|+|...+..+. +...+++.+|-|+|||.+....++..+... .+..+++++|++..|.++...++..+
T Consensus 163 ~l~p~Q~~i~~~l~-~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~---------~~~~i~~va~t~~qA~~~~~~i~~~i 232 (592)
T 3cpe_A 163 QLRDYQRDMLKIMS-SKRMTVCNLSRQLGKTTVVAIFLAHFVCFN---------KDKAVGILAHKGSMSAEVLDRTKQAI 232 (592)
T ss_dssp CCCHHHHHHHHHHH-HCSEEEEEECSSSCHHHHHHHHHHHHHHTS---------SSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhc-cccEEEEEEcCccChHHHHHHHHHHHHHhC---------CCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 58999999998763 345588999999999998766555555433 13479999999999999998888776
Q ss_pred ccC
Q 000129 575 QMY 577 (2114)
Q Consensus 575 ~~~ 577 (2114)
...
T Consensus 233 ~~~ 235 (592)
T 3cpe_A 233 ELL 235 (592)
T ss_dssp TTS
T ss_pred HhC
Confidence 543
No 207
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=95.27 E-value=0.028 Score=75.42 Aligned_cols=93 Identities=20% Similarity=0.167 Sum_probs=68.1
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000129 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~ 1418 (2114)
+..+|+-|.+++. ..+.+++|.|+.|||||.+..--+...+.... ...-+++++++|+..+.++.+++.+.++..
T Consensus 7 ~~~Ln~~Q~~av~---~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~-~~~~~iL~ltft~~aa~e~~~rl~~~~~~~- 81 (647)
T 3lfu_A 7 LDSLNDKQREAVA---APRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN-CSPYSIMAVTFTNKAAAEMRHRIGQLMGTS- 81 (647)
T ss_dssp HTTCCHHHHHHHT---CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSC-CCGGGEEEEESSHHHHHHHHHHHHHHHCSC-
T ss_pred hhcCCHHHHHHHh---CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCC-CChhhEEEEeccHHHHHHHHHHHHHHhccc-
Confidence 3579999999997 34677999999999999987666665555421 112289999999999999999988655421
Q ss_pred CcEEEEEcCCcccchhhccCCcEEEEChhhHHH-HHhh
Q 000129 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDA-LSRR 1455 (2114)
Q Consensus 1419 g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~-l~r~ 1455 (2114)
...+-|+|...|.. +++.
T Consensus 82 -------------------~~~~~v~Tfhs~~~~il~~ 100 (647)
T 3lfu_A 82 -------------------QGGMWVGTFHGLAHRLLRA 100 (647)
T ss_dssp -------------------CTTCEEEEHHHHHHHHHHH
T ss_pred -------------------cCCcEEEcHHHHHHHHHHH
Confidence 13577888887643 4443
No 208
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=95.23 E-value=0.023 Score=51.99 Aligned_cols=56 Identities=21% Similarity=0.186 Sum_probs=52.0
Q ss_pred CccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhc
Q 000129 1933 SMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNR 1991 (2114)
Q Consensus 1933 s~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~ 1991 (2114)
.+|.+|||++...+.+|.++| |.|+.+|..+..++...+.++++.+..++...++.
T Consensus 7 ~~l~~L~Gi~~~~~~kL~e~G---i~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr~ 62 (70)
T 1wcn_A 7 DDLLNLEGVDRDLAFKLAARG---VCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARN 62 (70)
T ss_dssp HHHHSSTTCCHHHHHHHHTTT---CCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred hHHHHcCCCCHHHHHHHHHcC---CCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHH
Confidence 468899999999999999999 99999999999999999999999999999888775
No 209
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=95.11 E-value=0.097 Score=64.67 Aligned_cols=70 Identities=9% Similarity=0.050 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHh
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKF 1414 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f 1414 (2114)
.++|+|...+..+.. .+.+++..+-+.|||.++...++..+.. .++. .+++++|++..|..+++.++..+
T Consensus 163 ~L~p~Qk~il~~l~~-~R~~vi~~sRq~GKT~l~a~~~l~~a~~-~~g~--~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSS-KRMTVCNLSRQLGKTTVVAIFLAHFVCF-NKDK--AVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp CCCHHHHHHHHHHHH-SSEEEEEECSSSCHHHHHHHHHHHHHHS-SSSC--EEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhcc-CcEEEEEEcCcCChhHHHHHHHHHHHHh-CCCC--eEEEEeCCHHHHHHHHHHHHHHH
Confidence 689999999988753 4558999999999998876655543333 2333 89999999999998887777544
No 210
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=95.04 E-value=0.26 Score=60.89 Aligned_cols=71 Identities=20% Similarity=0.212 Sum_probs=54.9
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.|+|+|...+..+.. ...+++..+-+.|||.++...++..+... .+..+++++|++.-|.++++.+...+
T Consensus 163 ~L~p~Qk~il~~l~~-~R~~vi~~sRq~GKT~l~a~~~l~~a~~~---------~g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSS-KRMTVCNLSRQLGKTTVVAIFLAHFVCFN---------KDKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp CCCHHHHHHHHHHHH-SSEEEEEECSSSCHHHHHHHHHHHHHHSS---------SSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhcc-CcEEEEEEcCcCChhHHHHHHHHHHHHhC---------CCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 789999999986543 34588999999999998776666544332 23479999999999999988887765
Q ss_pred c
Q 000129 575 Q 575 (2114)
Q Consensus 575 ~ 575 (2114)
.
T Consensus 233 ~ 233 (385)
T 2o0j_A 233 E 233 (385)
T ss_dssp H
T ss_pred H
Confidence 4
No 211
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=94.55 E-value=0.031 Score=75.21 Aligned_cols=86 Identities=19% Similarity=0.157 Sum_probs=65.6
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.||+-|.+++.. .+.+++|.|+.|||||.+..--+.+.+..... ...++++|+.|+..|.++.+++.+.+
T Consensus 2 ~L~~~Q~~av~~---~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~-------~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY-------QARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHC---CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCC-------CGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhC---CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCC-------CHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 589999999874 35679999999999999887777776655311 22379999999999999999998875
Q ss_pred ccCCcEEEEEeCCCccChhhhccceEEEcCHhHH
Q 000129 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW 608 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~ 608 (2114)
+..+ ...+-|+|-..|
T Consensus 72 ~~~~------------------~~~~~v~Tfhs~ 87 (673)
T 1uaa_A 72 GRKE------------------ARGLMISTFHTL 87 (673)
T ss_dssp CTTT------------------TTTSEEEEHHHH
T ss_pred Cccc------------------ccCCEEEeHHHH
Confidence 4311 124678888876
No 212
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=94.45 E-value=0.18 Score=66.66 Aligned_cols=72 Identities=8% Similarity=0.038 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~ 1416 (2114)
.++|+|...+..+.. ...+++.+|-|+|||.+....++..+.. .++. ++++++|++..|.+++..++..+..
T Consensus 163 ~l~p~Q~~i~~~l~~-~r~~~i~~~Rq~GKS~~~a~~~l~~~~~-~~~~--~i~~va~t~~qA~~~~~~i~~~i~~ 234 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSS-KRMTVCNLSRQLGKTTVVAIFLAHFVCF-NKDK--AVGILAHKGSMSAEVLDRTKQAIEL 234 (592)
T ss_dssp CCCHHHHHHHHHHHH-CSEEEEEECSSSCHHHHHHHHHHHHHHT-SSSC--EEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHhhcc-ccEEEEEEcCccChHHHHHHHHHHHHHh-CCCC--eEEEEECCHHHHHHHHHHHHHHHHh
Confidence 589999999988743 4558999999999998876544444443 2333 8999999999999999888755543
No 213
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=94.39 E-value=0.046 Score=74.04 Aligned_cols=110 Identities=20% Similarity=0.223 Sum_probs=74.9
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHh
Q 000129 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~ 573 (2114)
..||+-|.+++.. .+.+++|.|+.|||||.+..--+.+.+..... ...++++|+.|+..|.++.+++.+.
T Consensus 10 ~~Ln~~Q~~av~~---~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~-------~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 10 AHLNKEQQEAVRT---TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHV-------APWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TTSCHHHHHHHHC---CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCC-------CGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC---CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCC-------CHHHeEEEeccHHHHHHHHHHHHHH
Confidence 4799999999874 35679999999999999987777776654211 2347999999999999999999887
Q ss_pred hccCCcEEEEEeCCCccChhhhccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccc
Q 000129 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIH 633 (2114)
Q Consensus 574 ~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH 633 (2114)
++.. ...+-|+|-..| ..+.|......-+ .-++-|+|+.+
T Consensus 80 l~~~-------------------~~~~~v~Tfhs~~~~ilr~~~~~~g~-~~~f~i~d~~d 120 (724)
T 1pjr_A 80 LGGA-------------------AEDVWISTFHSMCVRILRRDIDRIGI-NRNFSILDPTD 120 (724)
T ss_dssp HGGG-------------------GTTSEEEEHHHHHHHHHHHHGGGGTC-CTTCEECCHHH
T ss_pred hccc-------------------ccCcEEeeHHHHHHHHHHHHHHHhCC-CCCCEECCHHH
Confidence 5420 123578888876 3334432111100 11356777665
No 214
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.36 E-value=0.15 Score=61.40 Aligned_cols=130 Identities=12% Similarity=0.135 Sum_probs=64.8
Q ss_pred CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCC---ceEEEEEcccH-HHHHHHHHHHHHHhcCCCCcEEEEEcCCccc
Q 000129 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETG---VMRAVYIAPLE-ALAKERYRDWEIKFGQGLGMRVVELTGETAM 1431 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~---~~k~l~I~Ptr-~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~ 1431 (2114)
...+++|.||+|+|||.++- .+++.+......+ .+..++|--.. .--.+.+..+.+.+. |.++ +++.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~-~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~---g~~~---~~~~-- 114 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVN-DVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAIS---KENL---CGDI-- 114 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHH-HHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHS---CCC-----CCC--
T ss_pred CCCeEEEECCCCCCHHHHHH-HHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhc---CCCC---CchH--
Confidence 45689999999999998874 4455554422111 34666664221 111233333333442 2111 0100
Q ss_pred chhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccC
Q 000129 1432 DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSL 1511 (2114)
Q Consensus 1432 ~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl 1511 (2114)
+-+.+..++.... ..-...-+|++||+|.+.+.. .+.. +-.+......++-+|+.++|+
T Consensus 115 -------------~~~~L~~~f~~~~--~~~~~~~ii~lDE~d~l~~q~-----~L~~-l~~~~~~~~s~~~vI~i~n~~ 173 (318)
T 3te6_A 115 -------------SLEALNFYITNVP--KAKKRKTLILIQNPENLLSEK-----ILQY-FEKWISSKNSKLSIICVGGHN 173 (318)
T ss_dssp -------------CHHHHHHHHHHSC--GGGSCEEEEEEECCSSSCCTH-----HHHH-HHHHHHCSSCCEEEEEECCSS
T ss_pred -------------HHHHHHHHHHHhh--hccCCceEEEEecHHHhhcch-----HHHH-HHhcccccCCcEEEEEEecCc
Confidence 1122333333210 112346799999999987221 2222 222222223467788899998
Q ss_pred CChh
Q 000129 1512 ANAK 1515 (2114)
Q Consensus 1512 ~n~~ 1515 (2114)
.+..
T Consensus 174 d~~~ 177 (318)
T 3te6_A 174 VTIR 177 (318)
T ss_dssp CCCH
T ss_pred ccch
Confidence 6643
No 215
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.93 E-value=0.21 Score=55.35 Aligned_cols=38 Identities=16% Similarity=0.055 Sum_probs=26.9
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccH
Q 000129 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLE 1400 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr 1400 (2114)
.-.++.||.|+|||+.+.-.+.+.... +. +++++.|..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~---g~--~v~~~~~~~ 41 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLG---KK--KVAVFKPKI 41 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT---TC--EEEEEEEC-
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC---CC--eEEEEeecc
Confidence 457899999999998875444444333 33 889998984
No 216
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=93.82 E-value=0.062 Score=72.35 Aligned_cols=70 Identities=23% Similarity=0.192 Sum_probs=55.4
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc-CCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~-~~~~~k~l~I~Ptr~La~q~~~~~~~~f~ 1415 (2114)
.+||-|.+++.. .+.+++|.|+.|||||.+..--+...+.... +.. ++++|+.|+..|.++.+++.+.++
T Consensus 2 ~L~~~Q~~av~~---~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~--~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQAR--HIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHC---CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGG--GEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhC---CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHH--HeEEEeccHHHHHHHHHHHHHHcC
Confidence 589999999974 3677999999999999887666666555421 223 899999999999999998886554
No 217
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=93.67 E-value=0.41 Score=57.58 Aligned_cols=127 Identities=9% Similarity=0.132 Sum_probs=62.9
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccH-----HHHHHHHHHHHHhhccCCcEEEEEe
Q 000129 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMK-----ALVAEVVGNLSNRLQMYDVKVRELS 585 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~r-----aLa~q~~~~~~~~~~~~gi~v~~l~ 585 (2114)
..+++++||+|+|||.++-. +++.+...... .....+..++|--+. .+..++++.+ . |.++ +
T Consensus 45 ~~~lli~GpPGTGKT~~v~~-v~~~L~~~~~~---~~~~~~~~v~INc~~~~t~~~~~~~I~~~L----~--g~~~---~ 111 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVND-VMDELITSSAR---KELPIFDYIHIDALELAGMDALYEKIWFAI----S--KENL---C 111 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHH-HHHHHHHTTTT---TSSCCEEEEEEETTCCC--HHHHHHHHHHH----S--CCC-----
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHHHhhh---ccCCceEEEEEeccccCCHHHHHHHHHHHh----c--CCCC---C
Confidence 45899999999999988754 44555432111 012246677765222 2223333332 1 1111 1
Q ss_pred CCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEE
Q 000129 586 GDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVG 665 (2114)
Q Consensus 586 Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~ 665 (2114)
++. +-+.+..+..... ..-...-+|++||+|.+.+ .. ++-.+.+........+-+|+
T Consensus 112 ~~~---------------~~~~L~~~f~~~~--~~~~~~~ii~lDE~d~l~~--q~----~L~~l~~~~~~~~s~~~vI~ 168 (318)
T 3te6_A 112 GDI---------------SLEALNFYITNVP--KAKKRKTLILIQNPENLLS--EK----ILQYFEKWISSKNSKLSIIC 168 (318)
T ss_dssp CCC---------------CHHHHHHHHHHSC--GGGSCEEEEEEECCSSSCC--TH----HHHHHHHHHHCSSCCEEEEE
T ss_pred chH---------------HHHHHHHHHHHhh--hccCCceEEEEecHHHhhc--ch----HHHHHHhcccccCCcEEEEE
Confidence 110 1122322222110 0112346899999999872 12 22333333333344567888
Q ss_pred EccccCCh
Q 000129 666 LSATLPNY 673 (2114)
Q Consensus 666 lSATlpn~ 673 (2114)
.++|+.+.
T Consensus 169 i~n~~d~~ 176 (318)
T 3te6_A 169 VGGHNVTI 176 (318)
T ss_dssp ECCSSCCC
T ss_pred EecCcccc
Confidence 89997653
No 218
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=93.56 E-value=0.1 Score=70.60 Aligned_cols=110 Identities=22% Similarity=0.182 Sum_probs=74.1
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000129 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g 1419 (2114)
..+||-|.+++.. .+.+++|.|+.|||||.+..--+...+.... -..-++++|+.|+..|.++.+++.+.++..
T Consensus 10 ~~Ln~~Q~~av~~---~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~-~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~-- 83 (724)
T 1pjr_A 10 AHLNKEQQEAVRT---TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH-VAPWNILAITFTNKAAREMRERVQSLLGGA-- 83 (724)
T ss_dssp TTSCHHHHHHHHC---CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC-CCGGGEEEEESSHHHHHHHHHHHHHHHGGG--
T ss_pred hhCCHHHHHHHhC---CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcC-CCHHHeEEEeccHHHHHHHHHHHHHHhccc--
Confidence 5799999999874 4567999999999999887666666665421 112279999999999999999888655421
Q ss_pred cEEEEEcCCcccchhhccCCcEEEEChhhHH-HHHhhhcccccccceeEEEecccc
Q 000129 1420 MRVVELTGETAMDLKLLEKGQIIISTPEKWD-ALSRRWKQRKYVQQVSLFIIDELH 1474 (2114)
Q Consensus 1420 ~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~-~l~r~~~~~~~l~~v~liIiDEaH 1474 (2114)
...+-|+|-..|. .++++......+ .-++-|+|+.+
T Consensus 84 ------------------~~~~~v~Tfhs~~~~ilr~~~~~~g~-~~~f~i~d~~d 120 (724)
T 1pjr_A 84 ------------------AEDVWISTFHSMCVRILRRDIDRIGI-NRNFSILDPTD 120 (724)
T ss_dssp ------------------GTTSEEEEHHHHHHHHHHHHGGGGTC-CTTCEECCHHH
T ss_pred ------------------ccCcEEeeHHHHHHHHHHHHHHHhCC-CCCCEECCHHH
Confidence 1236788877764 344442221111 11345777765
No 219
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.50 E-value=0.066 Score=61.13 Aligned_cols=40 Identities=15% Similarity=0.009 Sum_probs=28.6
Q ss_pred CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccH
Q 000129 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLE 1400 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr 1400 (2114)
.+.-+++.||+|+|||+.+.-.+.+.... +. +++++.|..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~---g~--kVli~~~~~ 50 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYA---DV--KYLVFKPKI 50 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHT---TC--CEEEEEECC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhc---CC--EEEEEEecc
Confidence 34567889999999999876555544433 33 788888865
No 220
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=93.44 E-value=0.05 Score=63.93 Aligned_cols=80 Identities=18% Similarity=0.130 Sum_probs=62.9
Q ss_pred hhhHHHHHHHHHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCC
Q 000129 966 ERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVR 1045 (2114)
Q Consensus 966 ~~~~~li~~al~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~i~s~s~ef~~i~~r 1045 (2114)
.+..+.+..|+..|...|+|+.+ | .+|++|+.+|.++++|...+++..+...+|. .+++.|.|+-++ .++.+|
T Consensus 14 pP~~~~l~~A~~~L~~LgAld~~---g--~lT~lG~~ma~lPl~P~lakmLl~a~~~~c~-~~~l~iaA~Ls~-~~~f~~ 86 (270)
T 3i4u_A 14 GSPMETLITAMEQLYTLGALDDE---G--LLTRLGRRMAEFPLEPMLCKMLIMSVHLGCS-EEMLTIVSMLSV-QNVFYR 86 (270)
T ss_dssp CCHHHHHHHHHHHHHHHTSBCTT---S--CBCHHHHHHTTSCSCHHHHHHHHHHHHTTCH-HHHHHHHHHHTS-SCCBCC
T ss_pred CcCHHHHHHHHHHHHHcCCcCCC---C--CccHHHHHHHhCCCCHHHHHHHHHhhhcCCH-HHHHHHHHHHCC-CccccC
Confidence 34456789999999999999733 3 7999999999999999999999988776665 677777776554 577788
Q ss_pred hhHHHHH
Q 000129 1046 QDEKMEL 1052 (2114)
Q Consensus 1046 ~~e~~~l 1052 (2114)
+.++.+.
T Consensus 87 p~~~~~~ 93 (270)
T 3i4u_A 87 PKDKQAL 93 (270)
T ss_dssp CGGGHHH
T ss_pred CchhHHH
Confidence 7765543
No 221
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.18 E-value=0.17 Score=61.46 Aligned_cols=144 Identities=17% Similarity=0.204 Sum_probs=80.4
Q ss_pred HcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEE-EcCCcccc
Q 000129 1354 YNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVE-LTGETAMD 1432 (2114)
Q Consensus 1354 l~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~-l~G~~~~~ 1432 (2114)
+..++-++|+|++|+|||..+...+...... +. +++|+..- .-..|+..++....... .... ..|..+..
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~---g~--~Vl~fSlE-ms~~ql~~Rlls~~~~v---~~~~l~~g~Ls~~ 113 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALND---DR--GVAVFSLE-MSAEQLALRALSDLTSI---NMHDLESGRLDDD 113 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---TC--EEEEEESS-SCHHHHHHHHHHHHHCC---CHHHHHHTCCCHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---CC--eEEEEeCC-CCHHHHHHHHHHHhhCC---CHHHHhcCCCCHH
Confidence 3457779999999999998776555544432 33 77777543 22344454443222211 1100 11222211
Q ss_pred -h-------hhccCCcEEE-ECh----hhHHHHHhhhcccccccceeEEEecccccccCC-----CCchHHHHHHHHHHH
Q 000129 1433 -L-------KLLEKGQIII-STP----EKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-----GGPVLEVIVSRMRYI 1494 (2114)
Q Consensus 1433 -~-------~~l~~~~IIV-~TP----e~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~-----~g~~le~i~srl~~i 1494 (2114)
+ ..+...++.| -+| ..+...++++... ...+++||||-++++... +...+..+...++.+
T Consensus 114 e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~--~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~l 191 (338)
T 4a1f_A 114 QWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQ--HKELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTL 191 (338)
T ss_dssp HHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHH--CTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHh--cCCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHH
Confidence 1 1223345555 333 3444445543221 116899999999988642 334566677778877
Q ss_pred HhhcCCCceEEEEccc
Q 000129 1495 ASQVENKIRIVALSTS 1510 (2114)
Q Consensus 1495 ~~~~~~~~riV~lSAT 1510 (2114)
+..+ ++.+|++|-.
T Consensus 192 Akel--~vpVi~lsQl 205 (338)
T 4a1f_A 192 AREL--EIPIIALVQL 205 (338)
T ss_dssp HHHH--TSCEEEEEEC
T ss_pred HHHc--CCeEEEEEec
Confidence 7654 6778888764
No 222
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.13 E-value=0.2 Score=57.77 Aligned_cols=50 Identities=22% Similarity=0.278 Sum_probs=31.8
Q ss_pred cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHH
Q 000129 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDW 1410 (2114)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~ 1410 (2114)
..++.++|.||+|+|||..+...+...... ++ +++|+.-.. -..++.+++
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~---~~--~v~~~~~e~-~~~~~~~~~ 70 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKM---GE--PGIYVALEE-HPVQVRQNM 70 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHT---TC--CEEEEESSS-CHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhc---CC--eEEEEEccC-CHHHHHHHH
Confidence 456789999999999998875554444432 34 677776432 234444443
No 223
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=92.43 E-value=0.54 Score=58.11 Aligned_cols=21 Identities=52% Similarity=0.621 Sum_probs=17.3
Q ss_pred CCCcEEEEccCCCchHHHHHH
Q 000129 510 SADNILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l 530 (2114)
...+++++||+|+|||..+..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~ 63 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARL 63 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHH
Confidence 345799999999999987643
No 224
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=92.27 E-value=0.11 Score=55.34 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=17.1
Q ss_pred CCCcEEEEccCCCchHHHHHH
Q 000129 510 SADNILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l 530 (2114)
.++.+++++|+|+|||..+-.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~ 55 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQA 55 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 456799999999999986543
No 225
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.26 E-value=0.27 Score=60.90 Aligned_cols=26 Identities=31% Similarity=0.298 Sum_probs=19.4
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHhh
Q 000129 1357 DDNVLVAAPTGSGKTICSEFAILRNHQ 1383 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l~il~~l~ 1383 (2114)
..+++|.||+|+|||.++ ..+.+.+.
T Consensus 45 ~~~vll~G~~G~GKT~la-~~l~~~~~ 70 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS-KYIFNEIE 70 (384)
T ss_dssp CCEEEEEECTTSSHHHHH-HHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHH-HHHHHHHH
Confidence 457999999999999887 34444443
No 226
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=92.13 E-value=0.13 Score=73.90 Aligned_cols=74 Identities=23% Similarity=0.204 Sum_probs=58.3
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc-CCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000129 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~-~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~ 1416 (2114)
..+|+-|.+++.. .+.|++|.|..|||||.+..--+++.+.... +-..-+++++++|++.|.++.+++...++.
T Consensus 9 ~~~t~eQ~~~i~~---~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~~ 83 (1232)
T 3u4q_A 9 STWTDDQWNAIVS---TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALEK 83 (1232)
T ss_dssp -CCCHHHHHHHHC---CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhC---CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHHH
Confidence 3689999999874 3678999999999999988777777766532 011127999999999999999999876653
No 227
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.08 E-value=0.4 Score=53.84 Aligned_cols=18 Identities=33% Similarity=0.615 Sum_probs=15.6
Q ss_pred CcEEEEecCCCchHHHHH
Q 000129 1358 DNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~ 1375 (2114)
.++++.||+|+|||.++.
T Consensus 39 ~~~ll~G~~G~GKT~l~~ 56 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAI 56 (226)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 369999999999998764
No 228
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.06 E-value=0.18 Score=63.03 Aligned_cols=85 Identities=19% Similarity=0.205 Sum_probs=52.4
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccCh
Q 000129 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR 592 (2114)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~ 592 (2114)
-.++.|+.|||||.... +.+.. .+.++++||++++.++.+++.+. |. .
T Consensus 163 v~~I~G~aGsGKTt~I~----~~~~~------------~~~lVlTpT~~aa~~l~~kl~~~----~~--------~---- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEIL----SRVNF------------EEDLILVPGRQAAEMIRRRANAS----GI--------I---- 210 (446)
T ss_dssp EEEEEECTTSCHHHHHH----HHCCT------------TTCEEEESCHHHHHHHHHHHTTT----SC--------C----
T ss_pred EEEEEcCCCCCHHHHHH----HHhcc------------CCeEEEeCCHHHHHHHHHHhhhc----Cc--------c----
Confidence 46799999999998642 22211 13699999999998887776432 10 0
Q ss_pred hhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccc
Q 000129 593 QQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2114)
Q Consensus 593 ~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (2114)
.....-|.|-+++ +.+... ...-..++|||||+-+++
T Consensus 211 ---~~~~~~V~T~dsf--L~~~~~--~~~~~~d~liiDE~sm~~ 247 (446)
T 3vkw_A 211 ---VATKDNVRTVDSF--LMNYGK--GARCQFKRLFIDEGLMLH 247 (446)
T ss_dssp ---CCCTTTEEEHHHH--HHTTTS--SCCCCCSEEEEETGGGSC
T ss_pred ---ccccceEEEeHHh--hcCCCC--CCCCcCCEEEEeCcccCC
Confidence 0122346677753 222211 111237899999999774
No 229
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.01 E-value=0.34 Score=61.59 Aligned_cols=143 Identities=24% Similarity=0.182 Sum_probs=75.3
Q ss_pred CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccc-h-
Q 000129 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD-L- 1433 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~-~- 1433 (2114)
.++-++|+|++|+|||..+...+.+.... .+. +++|+... .-..|+..++..........++ ..|..+.. +
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~--~g~--~vl~~slE-~~~~~l~~R~~~~~~~i~~~~l--~~g~l~~~~~~ 271 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK--EGV--GVGIYSLE-MPAAQLTLRMMCSEARIDMNRV--RLGQLTDRDFS 271 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT--TCC--CEEEEESS-SCHHHHHHHHHHHHTTCCTTTC--CGGGCCHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCC--eEEEEECC-CCHHHHHHHHHHHHcCCCHHHH--hCCCCCHHHHH
Confidence 46779999999999998776555554432 123 67776543 2233444444322221100000 12322211 1
Q ss_pred ------hhccCCcEEEE-----ChhhHHHHHhhhcccccccceeEEEecccccccCC--C---Cc---hHHHHHHHHHHH
Q 000129 1434 ------KLLEKGQIIIS-----TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ--G---GP---VLEVIVSRMRYI 1494 (2114)
Q Consensus 1434 ------~~l~~~~IIV~-----TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~--~---g~---~le~i~srl~~i 1494 (2114)
..+....+.+- |++.+...++++... ..+++||||.++.+... . .. .+..+...++.+
T Consensus 272 ~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~~---~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~l 348 (444)
T 2q6t_A 272 RLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLVSQ---NQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKAL 348 (444)
T ss_dssp HHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHHH---SCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHH---cCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHH
Confidence 12234456553 344444444443322 25899999999988643 1 11 234455666666
Q ss_pred HhhcCCCceEEEEccc
Q 000129 1495 ASQVENKIRIVALSTS 1510 (2114)
Q Consensus 1495 ~~~~~~~~riV~lSAT 1510 (2114)
...+ ++.+|++|-.
T Consensus 349 Ake~--~v~vi~lsql 362 (444)
T 2q6t_A 349 AREL--GIPIIALSQL 362 (444)
T ss_dssp HHHH--TSCEEEEEEC
T ss_pred HHHh--CCeEEEEecC
Confidence 6543 5777877753
No 230
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=91.95 E-value=0.16 Score=72.97 Aligned_cols=74 Identities=23% Similarity=0.310 Sum_probs=58.8
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHh
Q 000129 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~ 573 (2114)
..+|+-|.+++.. .+.+++|.|.-|||||.+..--+++.+..+.. ..+.-+++++++|++.|.++.+++...
T Consensus 9 ~~~t~eQ~~~i~~---~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~-----~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 9 STWTDDQWNAIVS---TGQDILVAAAAGSGKTAVLVERMIRKITAEEN-----PIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp -CCCHHHHHHHHC---CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSS-----CCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhC---CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCC-----CCCccceEEEeccHHHHHHHHHHHHHH
Confidence 3689999999874 36689999999999999988777777765321 112337999999999999999999886
Q ss_pred hc
Q 000129 574 LQ 575 (2114)
Q Consensus 574 ~~ 575 (2114)
+.
T Consensus 81 l~ 82 (1232)
T 3u4q_A 81 LE 82 (1232)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 231
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=91.79 E-value=0.38 Score=58.07 Aligned_cols=142 Identities=18% Similarity=0.180 Sum_probs=75.6
Q ss_pred cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEE-cCC--ccc
Q 000129 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVEL-TGE--TAM 1431 (2114)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l-~G~--~~~ 1431 (2114)
..++-++|+|++|+|||..+...+.+...+ +. +++|+.-- .-..|+..++..... ++....+ .|. .+.
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~---g~--~vl~~slE-~s~~~l~~R~~~~~~---~i~~~~l~~~~~~l~~ 136 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDN---DD--VVNLHSLE-MGKKENIKRLIVTAG---SINAQKIKAARRDFAS 136 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTT---TC--EEEEEESS-SCHHHHHHHHHHHHT---TCCHHHHHSCHHHHCS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---CC--eEEEEECC-CCHHHHHHHHHHHHc---CCCHHHHhcCCCCCCH
Confidence 457779999999999998776655554433 23 78887643 333444444443222 1111000 111 000
Q ss_pred -c-------hhhccCCcEEEE-----ChhhHHHHHhhhccccccccee--EEEecccccccCCC--C---chHHHHHHHH
Q 000129 1432 -D-------LKLLEKGQIIIS-----TPEKWDALSRRWKQRKYVQQVS--LFIIDELHLIGGQG--G---PVLEVIVSRM 1491 (2114)
Q Consensus 1432 -~-------~~~l~~~~IIV~-----TPe~l~~l~r~~~~~~~l~~v~--liIiDEaH~l~~~~--g---~~le~i~srl 1491 (2114)
+ ...+....+.+. |++.+...++++... ..++ +||||-++.+.... . ..+..+...+
T Consensus 137 ~~~~~l~~a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l~~~---~~~~~~lVVID~l~~l~~~~~~~~r~~~i~~~~~~L 213 (315)
T 3bh0_A 137 EDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRK---NPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDL 213 (315)
T ss_dssp SCHHHHHHHHHHHHTSCEEEECCSCCBHHHHHHHHHHHHHT---SSSCCEEEEEECGGGSBCSCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHHHHh---cCCCCeEEEEeCchhcCCCCCCCCHHHHHHHHHHHH
Confidence 0 112223456553 334444444443222 2578 99999999886421 1 2334556666
Q ss_pred HHHHhhcCCCceEEEEccc
Q 000129 1492 RYIASQVENKIRIVALSTS 1510 (2114)
Q Consensus 1492 ~~i~~~~~~~~riV~lSAT 1510 (2114)
+.++..+ ++.++++|-.
T Consensus 214 k~lAk~~--~i~vi~lsql 230 (315)
T 3bh0_A 214 KKMAREL--DVVVIALSQL 230 (315)
T ss_dssp HHHHHHH--TCEEEEEECC
T ss_pred HHHHHHh--CCeEEEEeec
Confidence 6666543 5677777653
No 232
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.78 E-value=0.4 Score=57.50 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=18.7
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHh
Q 000129 1357 DDNVLVAAPTGSGKTICSEFAILRNH 1382 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l~il~~l 1382 (2114)
..++++.||+|+|||.++. ++.+.+
T Consensus 67 ~~~vll~G~~GtGKT~la~-~la~~l 91 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVAL-KMAGLL 91 (309)
T ss_dssp CCEEEEEECTTSSHHHHHH-HHHHHH
T ss_pred CceEEEECCCCCCHHHHHH-HHHHHH
Confidence 4479999999999998874 333333
No 233
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=91.77 E-value=0.33 Score=55.55 Aligned_cols=32 Identities=28% Similarity=0.310 Sum_probs=22.2
Q ss_pred HHHHHHHHHHc--CCCcEEEEccCCCchHHHHHH
Q 000129 499 VQSRVYKSALS--SADNILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 499 iQ~~~i~~~l~--~~~nvlv~APTGsGKT~~a~l 530 (2114)
...+.+..+.. ...+++++||+|+|||..+..
T Consensus 38 ~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~ 71 (242)
T 3bos_A 38 ELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHA 71 (242)
T ss_dssp HHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHH
Confidence 33444444443 356899999999999987643
No 234
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=91.71 E-value=0.86 Score=55.09 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=24.5
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcc
Q 000129 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP 1398 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~P 1398 (2114)
.++++.||+|+|||.++. ++.+.+... +. .++|+..
T Consensus 38 ~~lll~G~~GtGKT~la~-~i~~~~~~~--~~--~~~~i~~ 73 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQ-AAGNEAKKR--GY--RVIYSSA 73 (324)
T ss_dssp SSEEEECSSSSSHHHHHH-HHHHHHHHT--TC--CEEEEEH
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHC--CC--EEEEEEH
Confidence 579999999999998873 444555441 22 5666653
No 235
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.64 E-value=0.31 Score=62.12 Aligned_cols=142 Identities=23% Similarity=0.270 Sum_probs=73.3
Q ss_pred cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEE-EcCCccc-c
Q 000129 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVE-LTGETAM-D 1432 (2114)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~-l~G~~~~-~ 1432 (2114)
..++-++|.|++|+|||..+...+...... .+. +++|+...-. ..|+..++..... |+.... ..|.... +
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~--~g~--~Vl~~s~E~s-~~~l~~r~~~~~~---~~~~~~l~~g~l~~~~ 272 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATK--TNE--NVAIFSLEMS-AQQLVMRMLCAEG---NINAQNLRTGKLTPED 272 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHH--SSC--CEEEEESSSC-HHHHHHHHHHHHH---TCCHHHHHTSCCCHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHh--CCC--cEEEEECCCC-HHHHHHHHHHHHc---CCCHHHHhcCCCCHHH
Confidence 357779999999999998876555544433 122 5777653321 2344444321111 111000 1122211 1
Q ss_pred h-------hhccCCcEEEE-----ChhhHHHHHhhhcccccccceeEEEecccccccCCC------CchHHHHHHHHHHH
Q 000129 1433 L-------KLLEKGQIIIS-----TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG------GPVLEVIVSRMRYI 1494 (2114)
Q Consensus 1433 ~-------~~l~~~~IIV~-----TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~------g~~le~i~srl~~i 1494 (2114)
. ..+...++.+. |++.+....++.... .++++||||+.+.+.... ...+..+...++.+
T Consensus 273 ~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~---~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~l 349 (454)
T 2r6a_A 273 WGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQE---SGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKAL 349 (454)
T ss_dssp HHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTT---TCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHH---cCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHH
Confidence 1 11233456554 344444444443221 368999999999886421 12334455666666
Q ss_pred HhhcCCCceEEEEcc
Q 000129 1495 ASQVENKIRIVALST 1509 (2114)
Q Consensus 1495 ~~~~~~~~riV~lSA 1509 (2114)
...+ ++.+|++|-
T Consensus 350 Ake~--~i~vi~~sq 362 (454)
T 2r6a_A 350 AREL--EVPVIALSQ 362 (454)
T ss_dssp HHHH--TCCEEEEEC
T ss_pred HHHh--CCeEEEEec
Confidence 5543 566777764
No 236
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=91.63 E-value=0.92 Score=57.39 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=26.1
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEccc
Q 000129 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPL 1399 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Pt 1399 (2114)
.++++.||+|+|||..+ -++.+.+....++. +++|+...
T Consensus 131 ~~lll~Gp~G~GKTtLa-~aia~~l~~~~~~~--~v~~v~~~ 169 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLL-QSIGNYVVQNEPDL--RVMYITSE 169 (440)
T ss_dssp CCEEEECSSSSSHHHHH-HHHHHHHHHHCCSS--CEEEEEHH
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHhCCCC--eEEEeeHH
Confidence 57999999999999887 34555554422233 66666543
No 237
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=91.39 E-value=0.55 Score=55.54 Aligned_cols=21 Identities=43% Similarity=0.643 Sum_probs=17.3
Q ss_pred cCCCcEEEEccCCCchHHHHH
Q 000129 509 SSADNILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 509 ~~~~nvlv~APTGsGKT~~a~ 529 (2114)
....+++++||+|+|||..+-
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHH
Confidence 345679999999999998763
No 238
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.26 E-value=0.42 Score=57.32 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=16.7
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 000129 511 ADNILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l 530 (2114)
..+++++||+|+|||.++..
T Consensus 67 ~~~vll~G~~GtGKT~la~~ 86 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALK 86 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 34799999999999988743
No 239
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.17 E-value=0.48 Score=58.62 Aligned_cols=20 Identities=35% Similarity=0.295 Sum_probs=16.6
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 000129 511 ADNILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l 530 (2114)
..+++++||+|+|||..+..
T Consensus 45 ~~~vll~G~~G~GKT~la~~ 64 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKY 64 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHH
Confidence 34799999999999988743
No 240
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=91.12 E-value=1.1 Score=54.17 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=18.2
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHH
Q 000129 512 DNILLCAPTGAGKTNVAVLTILQQL 536 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l 536 (2114)
.+++++||+|+|||..+-. +.+.+
T Consensus 38 ~~lll~G~~GtGKT~la~~-i~~~~ 61 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQA-AGNEA 61 (324)
T ss_dssp SSEEEECSSSSSHHHHHHH-HHHHH
T ss_pred CeEEEECCCCCcHHHHHHH-HHHHH
Confidence 4799999999999987643 33443
No 241
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=91.06 E-value=0.29 Score=54.44 Aligned_cols=38 Identities=18% Similarity=0.132 Sum_probs=27.6
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccH
Q 000129 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMK 560 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~r 560 (2114)
.-.+++||.|||||..++-.+.+....+ .+++++.|.+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g-----------~kV~v~k~~~ 46 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAK-----------QKIQVFKPEI 46 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTT-----------CCEEEEEEC-
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCC-----------CEEEEEEecc
Confidence 3467899999999988776655554332 3789999984
No 242
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.94 E-value=0.84 Score=51.85 Aligned_cols=46 Identities=13% Similarity=0.073 Sum_probs=27.5
Q ss_pred cee--EEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccC
Q 000129 1464 QVS--LFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSL 1511 (2114)
Q Consensus 1464 ~v~--liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl 1511 (2114)
+.+ ++|+||...+..........++..++.+... .+.-+|+.|-..
T Consensus 121 ~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~--~~~~vi~~~h~~ 168 (235)
T 2w0m_A 121 GYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNK--WNFTIYATSQYA 168 (235)
T ss_dssp CSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHH--TTEEEEEEEC--
T ss_pred CCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHh--CCCeEEEEeccC
Confidence 567 9999999977532223445566666666443 245566665554
No 243
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=90.86 E-value=0.5 Score=53.99 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=19.9
Q ss_pred CCCcEEEEecCCCchHHHHHHHHHHHhh
Q 000129 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQ 1383 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~l~il~~l~ 1383 (2114)
...++++.||+|+|||..+. .+.+.+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~-~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIH-AACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHH-HHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 36789999999999998773 3333333
No 244
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=90.75 E-value=1.9 Score=48.15 Aligned_cols=31 Identities=26% Similarity=0.432 Sum_probs=21.1
Q ss_pred HHHHHHHHHcCC--CcEEEEccCCCchHHHHHH
Q 000129 500 QSRVYKSALSSA--DNILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 500 Q~~~i~~~l~~~--~nvlv~APTGsGKT~~a~l 530 (2114)
..+.+...+... .+++++||+|+|||..+..
T Consensus 25 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~ 57 (226)
T 2chg_A 25 VIQRLKGYVERKNIPHLLFSGPPGTGKTATAIA 57 (226)
T ss_dssp HHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHH
Confidence 334444444443 3699999999999987643
No 245
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=90.56 E-value=0.37 Score=60.22 Aligned_cols=87 Identities=18% Similarity=0.134 Sum_probs=51.9
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhhc
Q 000129 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLL 1436 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~l 1436 (2114)
..-.+|.|+.|||||.... +.+. .. +.++++||++++.++.+++. .. |. .
T Consensus 161 ~~v~~I~G~aGsGKTt~I~----~~~~----~~--~~lVlTpT~~aa~~l~~kl~----~~-~~--------~------- 210 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEIL----SRVN----FE--EDLILVPGRQAAEMIRRRAN----AS-GI--------I------- 210 (446)
T ss_dssp SEEEEEEECTTSCHHHHHH----HHCC----TT--TCEEEESCHHHHHHHHHHHT----TT-SC--------C-------
T ss_pred ccEEEEEcCCCCCHHHHHH----HHhc----cC--CeEEEeCCHHHHHHHHHHhh----hc-Cc--------c-------
Confidence 3456889999999997652 2221 12 56999999999877665443 21 11 0
Q ss_pred cCCcEEEEChhhHHHHHhhhcccccccceeEEEeccccccc
Q 000129 1437 EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (2114)
Q Consensus 1437 ~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~ 1477 (2114)
.....-|.|-+++. .+.. ....-..+++||||+-++.
T Consensus 211 ~~~~~~V~T~dsfL---~~~~-~~~~~~~d~liiDE~sm~~ 247 (446)
T 3vkw_A 211 VATKDNVRTVDSFL---MNYG-KGARCQFKRLFIDEGLMLH 247 (446)
T ss_dssp CCCTTTEEEHHHHH---HTTT-SSCCCCCSEEEEETGGGSC
T ss_pred ccccceEEEeHHhh---cCCC-CCCCCcCCEEEEeCcccCC
Confidence 01123367766543 2211 1112247899999999773
No 246
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.46 E-value=0.48 Score=54.59 Aligned_cols=52 Identities=23% Similarity=0.305 Sum_probs=32.7
Q ss_pred HcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 508 l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
+..++.++++||+|+|||..++..+......+ .+++|+.-... ..++.+++.
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~-----------~~v~~~~~e~~-~~~~~~~~~ 71 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKMG-----------EPGIYVALEEH-PVQVRQNMA 71 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHHTT-----------CCEEEEESSSC-HHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhcC-----------CeEEEEEccCC-HHHHHHHHH
Confidence 34567789999999999998766555554322 15777754322 344444443
No 247
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=90.44 E-value=0.62 Score=54.25 Aligned_cols=20 Identities=40% Similarity=0.551 Sum_probs=16.7
Q ss_pred CCCcEEEEccCCCchHHHHH
Q 000129 510 SADNILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~ 529 (2114)
...+++++||+|+|||..+-
T Consensus 38 ~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 34579999999999998764
No 248
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=90.40 E-value=3.4 Score=46.64 Aligned_cols=31 Identities=29% Similarity=0.372 Sum_probs=20.8
Q ss_pred HHHHHHHHHcCCC---cEEEEccCCCchHHHHHH
Q 000129 500 QSRVYKSALSSAD---NILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 500 Q~~~i~~~l~~~~---nvlv~APTGsGKT~~a~l 530 (2114)
..+.+..++..+. .++++||+|+|||..+..
T Consensus 31 ~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~ 64 (250)
T 1njg_A 31 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARL 64 (250)
T ss_dssp HHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHH
Confidence 3344444444333 689999999999987643
No 249
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.36 E-value=0.94 Score=58.63 Aligned_cols=18 Identities=39% Similarity=0.597 Sum_probs=16.0
Q ss_pred CcEEEEccCCCchHHHHH
Q 000129 512 DNILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~ 529 (2114)
..++++||+|+|||.++.
T Consensus 78 ~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 579999999999998764
No 250
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=90.27 E-value=0.34 Score=51.61 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=16.6
Q ss_pred CCCcEEEEecCCCchHHHH
Q 000129 1356 TDDNVLVAAPTGSGKTICS 1374 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~ 1374 (2114)
.++.+++.||+|+|||..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677999999999999876
No 251
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=90.25 E-value=0.72 Score=51.06 Aligned_cols=38 Identities=16% Similarity=0.049 Sum_probs=28.1
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEccc
Q 000129 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPL 1399 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Pt 1399 (2114)
..-.++.||.|||||.-.+-++-+.... +. +++|+.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~---~~--kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIA---QY--KCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT---TC--CEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHc---CC--eEEEEccc
Confidence 3457889999999997766666555444 33 88999887
No 252
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=90.18 E-value=1.4 Score=54.78 Aligned_cols=20 Identities=45% Similarity=0.640 Sum_probs=16.9
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 000129 511 ADNILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l 530 (2114)
..++|++||+|+|||.++-.
T Consensus 148 ~~~vLL~GppGtGKT~la~a 167 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKA 167 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 45899999999999987643
No 253
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=90.12 E-value=0.43 Score=53.01 Aligned_cols=38 Identities=18% Similarity=0.038 Sum_probs=26.9
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccH
Q 000129 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLE 1400 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr 1400 (2114)
.-.++.||.|||||+.++-.+.+.... +. +++++.|..
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~---g~--kV~v~k~~~ 46 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIA---KQ--KIQVFKPEI 46 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHT---TC--CEEEEEEC-
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC---CC--EEEEEEecc
Confidence 457889999999998876555444333 33 889999984
No 254
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=89.92 E-value=2.7 Score=45.54 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=16.9
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 000129 511 ADNILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l 530 (2114)
..+++++||+|+|||..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~ 62 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEG 62 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHH
Confidence 45899999999999987653
No 255
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=89.91 E-value=1.4 Score=54.16 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=19.4
Q ss_pred CCCcEEEEecCCCchHHHHHHHHHHHh
Q 000129 1356 TDDNVLVAAPTGSGKTICSEFAILRNH 1382 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~l~il~~l 1382 (2114)
...+++|.||+|+|||.++. .+.+.+
T Consensus 43 ~~~~vll~G~~G~GKT~l~~-~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVAR-LVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHH-HHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHH-HHHHHH
Confidence 45689999999999998774 333444
No 256
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=89.80 E-value=0.79 Score=54.18 Aligned_cols=21 Identities=29% Similarity=0.637 Sum_probs=17.6
Q ss_pred cCCCcEEEEecCCCchHHHHH
Q 000129 1355 NTDDNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~~~ 1375 (2114)
....++++.||+|+|||.++.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHH
Confidence 346679999999999998773
No 257
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=89.79 E-value=1.8 Score=54.67 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=18.3
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHH
Q 000129 512 DNILLCAPTGAGKTNVAVLTILQQL 536 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l 536 (2114)
.+++++||+|+|||..+.. +.+.+
T Consensus 131 ~~lll~Gp~G~GKTtLa~a-ia~~l 154 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQS-IGNYV 154 (440)
T ss_dssp CCEEEECSSSSSHHHHHHH-HHHHH
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHH
Confidence 4799999999999987643 34444
No 258
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=89.46 E-value=0.73 Score=55.73 Aligned_cols=19 Identities=26% Similarity=0.620 Sum_probs=16.4
Q ss_pred CCcEEEEecCCCchHHHHH
Q 000129 1357 DDNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~ 1375 (2114)
..++++.||+|+|||.++.
T Consensus 51 ~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCEEEEECSSSSCHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4579999999999998873
No 259
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=89.44 E-value=1.3 Score=53.67 Aligned_cols=46 Identities=24% Similarity=0.307 Sum_probs=27.2
Q ss_pred ccEEEEecccccccCCc----hhHHHHHHHHHHHHhhcc-ccccEEEEccc
Q 000129 624 VKLLIIDEIHLLHDNRG----PVLESIVARTVRQIETTK-EHIRLVGLSAT 669 (2114)
Q Consensus 624 v~liIiDEaH~l~d~rg----~~le~iv~rl~~~~~~~~-~~~riv~lSAT 669 (2114)
..+|+|||+|.+...++ .....++..++..+.... ...+++.+.||
T Consensus 106 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~at 156 (322)
T 1xwi_A 106 PSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGAT 156 (322)
T ss_dssp SEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEE
T ss_pred CcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEec
Confidence 46999999999865332 234455555555554332 23455666666
No 260
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=89.30 E-value=0.31 Score=43.64 Aligned_cols=54 Identities=20% Similarity=0.232 Sum_probs=46.5
Q ss_pred CCccccCCCCCHHHHHHHHhCCCchhhhccCChHHhhhhhcCchh-HHHHHHHHhc
Q 000129 1141 QTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKM-GRTLHKFVHQ 1195 (2114)
Q Consensus 1141 ~~~l~q~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~ 1195 (2114)
.+.|..+||||+...++|-++==+++.+...+.+||.++++ ++. ++.|++++|.
T Consensus 3 ~s~L~~IpGIG~kr~~~LL~~Fgs~~~i~~As~eeL~~vig-~~~~A~~I~~~l~~ 57 (63)
T 2a1j_A 3 QDFLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILG-NAANAKQLYDFIHT 57 (63)
T ss_dssp CHHHHTSTTCCHHHHHHHHHHCSSHHHHHTCCHHHHHHHHS-CHHHHHHHHHHHHC
T ss_pred HhHHHcCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHHcC-chHHHHHHHHHHhc
Confidence 46788999999999999887644789999999999999988 566 9999999974
No 261
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=89.25 E-value=0.71 Score=57.48 Aligned_cols=20 Identities=30% Similarity=0.609 Sum_probs=17.1
Q ss_pred CCCcEEEEecCCCchHHHHH
Q 000129 1356 TDDNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~ 1375 (2114)
...++++.||+|+|||.++.
T Consensus 147 ~~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 34689999999999998774
No 262
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=89.19 E-value=0.7 Score=58.46 Aligned_cols=142 Identities=18% Similarity=0.172 Sum_probs=77.0
Q ss_pred cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEE-EcCC--ccc
Q 000129 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVE-LTGE--TAM 1431 (2114)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~-l~G~--~~~ 1431 (2114)
..++-++|+|++|+|||..++..+.+.... +. +++|+.-- .-..|+..++..... |+.... ..|. ...
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~--~vl~fSlE-ms~~ql~~R~~~~~~---~i~~~~l~~g~~~l~~ 265 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDN---DD--VVNLHSLE-MGKKENIKRLIVTAG---SINAQKIKAARRDFAS 265 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHT---TC--EEEEECSS-SCTTHHHHHHHHHHS---CCCHHHHHHTGGGTCC
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHc---CC--EEEEEECC-CCHHHHHHHHHHHHc---CCCHHHHhcccCCCCH
Confidence 356779999999999998876666555443 33 78887543 223344444332222 111100 1122 111
Q ss_pred -c-------hhhccCCcEEEE-----ChhhHHHHHhhhccccccccee--EEEecccccccCCC--Cc---hHHHHHHHH
Q 000129 1432 -D-------LKLLEKGQIIIS-----TPEKWDALSRRWKQRKYVQQVS--LFIIDELHLIGGQG--GP---VLEVIVSRM 1491 (2114)
Q Consensus 1432 -~-------~~~l~~~~IIV~-----TPe~l~~l~r~~~~~~~l~~v~--liIiDEaH~l~~~~--g~---~le~i~srl 1491 (2114)
+ ...+...++.|- |++.+...++++... ..++ +||||=++.+.... .. .+..+...+
T Consensus 266 ~~~~~l~~a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l~~~---~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~L 342 (444)
T 3bgw_A 266 EDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRK---NPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDL 342 (444)
T ss_dssp SCHHHHHHHHHHHHTSCEEEECCSSCBHHHHHHHHHHHHHH---SCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHH---hCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHH
Confidence 1 112234456552 444555455554322 2578 99999999886432 11 233455566
Q ss_pred HHHHhhcCCCceEEEEccc
Q 000129 1492 RYIASQVENKIRIVALSTS 1510 (2114)
Q Consensus 1492 ~~i~~~~~~~~riV~lSAT 1510 (2114)
+.+...+ ++.+|++|-.
T Consensus 343 k~lAke~--~v~vi~lsql 359 (444)
T 3bgw_A 343 KKMAREL--DVVVIALSQL 359 (444)
T ss_dssp HHHHHHH--TCEEEEEEEC
T ss_pred HHHHHHh--CCeEEEEecC
Confidence 6665543 6778887764
No 263
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.16 E-value=0.79 Score=56.61 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=29.7
Q ss_pred cEEEEecccccccCCc-------hhHHHHHHHHHHHHhhccccccEEEEccc
Q 000129 625 KLLIIDEIHLLHDNRG-------PVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2114)
Q Consensus 625 ~liIiDEaH~l~d~rg-------~~le~iv~rl~~~~~~~~~~~riv~lSAT 669 (2114)
.+|+|||+|.+...|+ .....++..++..+......-.++.+-||
T Consensus 243 ~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaAT 294 (405)
T 4b4t_J 243 SIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMAT 294 (405)
T ss_dssp EEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEE
T ss_pred ceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEecc
Confidence 5889999999864321 23455666666666655555666677777
No 264
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=89.14 E-value=0.81 Score=55.28 Aligned_cols=29 Identities=21% Similarity=0.422 Sum_probs=18.7
Q ss_pred HHHHHHHHcCC---CcEEEEecCCCchHHHHH
Q 000129 1347 TQVFTVLYNTD---DNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1347 ~q~~~~il~~~---~nvli~ApTGSGKTl~~~ 1375 (2114)
.+.+..++..+ ..+++++|+|+|||.++.
T Consensus 35 ~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 35 KETFKSITSKGKIPHIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp HHHHHHHHHTTCCCSEEEECSSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHH
Confidence 34444444433 345777889999998773
No 265
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=89.03 E-value=1.2 Score=54.78 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=28.3
Q ss_pred CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccH
Q 000129 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLE 1400 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr 1400 (2114)
.++.++|.||+|+|||..++..+.+.... ++ +++|+..-.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~---g~--~vlyi~~E~ 112 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKA---GG--TCAFIDAEH 112 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT---TC--CEEEEESSC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHC---CC--eEEEEECCC
Confidence 46779999999999998876555544332 34 788886544
No 266
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=89.00 E-value=0.31 Score=43.63 Aligned_cols=53 Identities=13% Similarity=0.335 Sum_probs=44.8
Q ss_pred CccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHH-HHHHHHHHhc
Q 000129 1933 SMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQ-LLDIARFCNR 1991 (2114)
Q Consensus 1933 s~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~-~~~i~~~~~~ 1991 (2114)
+.|..|||||+.+.++|-++ +.|+.++.+++.++..++ ++... .+.|.++++.
T Consensus 4 s~L~~IpGIG~kr~~~LL~~----Fgs~~~i~~As~eeL~~v--ig~~~~A~~I~~~l~~ 57 (63)
T 2a1j_A 4 DFLLKMPGVNAKNCRSLMHH----VKNIAELAALSQDELTSI--LGNAANAKQLYDFIHT 57 (63)
T ss_dssp HHHHTSTTCCHHHHHHHHHH----CSSHHHHHTCCHHHHHHH--HSCHHHHHHHHHHHHC
T ss_pred hHHHcCCCCCHHHHHHHHHH----cCCHHHHHHCCHHHHHHH--cCchHHHHHHHHHHhc
Confidence 56889999999999997654 569999999999999998 55666 7889998864
No 267
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=88.96 E-value=0.98 Score=57.82 Aligned_cols=45 Identities=24% Similarity=0.456 Sum_probs=32.0
Q ss_pred cEEEEecccccccCC----chhHHHHHHHHHHHHhhccccccEEEEccc
Q 000129 625 KLLIIDEIHLLHDNR----GPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2114)
Q Consensus 625 ~liIiDEaH~l~d~r----g~~le~iv~rl~~~~~~~~~~~riv~lSAT 669 (2114)
.+|+|||+|.+...+ +..-..++..+++.+........++.+.||
T Consensus 299 ~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaT 347 (489)
T 3hu3_A 299 AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAAT 347 (489)
T ss_dssp EEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEE
T ss_pred cEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEec
Confidence 689999999987533 444556667777777665556667777777
No 268
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=88.94 E-value=0.74 Score=50.94 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=27.9
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
.-.+++||.|||||.-.+-.+-+....+ .+++|+.|.
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~-----------~kvl~~kp~ 57 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQ-----------YKCLVIKYA 57 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTT-----------CCEEEEEET
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcC-----------CeEEEEccc
Confidence 3468899999999987766666655443 378999887
No 269
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=88.79 E-value=1.5 Score=49.39 Aligned_cols=39 Identities=15% Similarity=0.019 Sum_probs=27.2
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHH
Q 000129 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEA 1401 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~ 1401 (2114)
.-.++.||-|||||+.++-.+.+.... +. +++++.|.+.
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~---g~--kVli~k~~~d 67 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFA---KQ--HAIVFKPCID 67 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHT---TC--CEEEEECC--
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC---CC--EEEEEEeccC
Confidence 345688999999998876665555443 33 8899999864
No 270
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=88.76 E-value=2.3 Score=51.60 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHH---cCC---CcEEEEecCCCchHHHHHHHHHHHhh
Q 000129 1342 FNPIQTQVFTVLY---NTD---DNVLVAAPTGSGKTICSEFAILRNHQ 1383 (2114)
Q Consensus 1342 ~~~iQ~q~~~~il---~~~---~nvli~ApTGSGKTl~~~l~il~~l~ 1383 (2114)
+.|+|.+++..+. .++ ..+++.||.|+|||.++. .+.+.+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~-~la~~l~ 49 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY-ALSRYLL 49 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH-HHHHHHT
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH-HHHHHHh
Confidence 3577877766553 232 348999999999998874 3444443
No 271
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=88.59 E-value=0.97 Score=53.12 Aligned_cols=19 Identities=37% Similarity=0.496 Sum_probs=16.3
Q ss_pred CcEEEEccCCCchHHHHHH
Q 000129 512 DNILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l 530 (2114)
.+++++||+|+|||.++..
T Consensus 65 ~~vLl~G~~GtGKT~la~~ 83 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAK 83 (272)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 4799999999999988743
No 272
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=88.53 E-value=1.3 Score=49.79 Aligned_cols=35 Identities=23% Similarity=0.180 Sum_probs=24.9
Q ss_pred CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcc
Q 000129 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP 1398 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~P 1398 (2114)
.++-++|.||+|+|||..+...+. .. ++ +++|+.-
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~~---~~--~v~~i~~ 53 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---LS---GK--KVAYVDT 53 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---HH---CS--EEEEEES
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---Hc---CC--cEEEEEC
Confidence 466789999999999987755443 22 34 7787753
No 273
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=88.49 E-value=1.1 Score=54.49 Aligned_cols=35 Identities=11% Similarity=0.130 Sum_probs=24.3
Q ss_pred CHHHHHHHHHH---HcCCC---cEEEEccCCCchHHHHHHH
Q 000129 497 NRVQSRVYKSA---LSSAD---NILLCAPTGAGKTNVAVLT 531 (2114)
Q Consensus 497 ~~iQ~~~i~~~---l~~~~---nvlv~APTGsGKT~~a~l~ 531 (2114)
.|+|.+++..+ +.+++ .+|++||.|+|||..+...
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~l 44 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYAL 44 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHH
Confidence 46666665543 33332 4899999999999887543
No 274
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=88.43 E-value=1.6 Score=55.75 Aligned_cols=21 Identities=29% Similarity=0.616 Sum_probs=17.7
Q ss_pred cCCCcEEEEecCCCchHHHHH
Q 000129 1355 NTDDNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~~~ 1375 (2114)
....++++.||+|+|||+++-
T Consensus 236 ~~~~~vLL~GppGtGKT~lAr 256 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIAR 256 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHHH
Confidence 445679999999999998773
No 275
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=88.40 E-value=4.2 Score=43.87 Aligned_cols=25 Identities=24% Similarity=0.334 Sum_probs=18.9
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHh
Q 000129 1357 DDNVLVAAPTGSGKTICSEFAILRNH 1382 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l~il~~l 1382 (2114)
..++++.||+|+|||.++. .+.+.+
T Consensus 43 ~~~vll~G~~G~GKT~la~-~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE-GLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH-HHHHHH
T ss_pred CCceEEECCCCCCHHHHHH-HHHHHH
Confidence 5689999999999998774 333333
No 276
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=88.35 E-value=1.4 Score=49.95 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=17.8
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHh
Q 000129 1358 DNVLVAAPTGSGKTICSEFAILRNH 1382 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~il~~l 1382 (2114)
..++|.||+|+|||.++. .+.+.+
T Consensus 46 ~~~ll~G~~G~GKT~l~~-~~~~~~ 69 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIAR-LLAKGL 69 (250)
T ss_dssp SEEEEECSTTSCHHHHHH-HHHHHH
T ss_pred eEEEEECCCCCCHHHHHH-HHHHHh
Confidence 368999999999998764 333433
No 277
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=88.29 E-value=0.67 Score=56.74 Aligned_cols=39 Identities=21% Similarity=0.217 Sum_probs=28.5
Q ss_pred CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEccc
Q 000129 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPL 1399 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Pt 1399 (2114)
.+..++|.||+|+|||..++..+...... ++ +++|+...
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~---g~--~vlyid~E 100 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---GK--TCAFIDAE 100 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT---TC--CEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC---CC--eEEEEeCC
Confidence 46779999999999999886655544433 34 78888764
No 278
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=88.02 E-value=0.93 Score=42.77 Aligned_cols=51 Identities=22% Similarity=0.268 Sum_probs=44.5
Q ss_pred cCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHh
Q 000129 1937 QLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCN 1990 (2114)
Q Consensus 1937 QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~ 1990 (2114)
-.|++++..++.|.++| |.|+.|++.+++.+..++++++-+...++.+.+.
T Consensus 8 ~~p~Lse~~~~~L~~~~---I~Tv~Dfl~~d~~eL~~~~~ls~~~v~~l~r~l~ 58 (83)
T 2kz3_A 8 LCPGLTEEMIQLLRSHR---IKTVVDLVSADLEEVAQKCGLSYKALVALRRVLL 58 (83)
T ss_dssp SSTTCCHHHHHHHHHTT---CCCHHHHTTSCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHCC---CCCHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34999999999999999 9999999999999999999999887766655443
No 279
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=87.96 E-value=0.67 Score=60.75 Aligned_cols=117 Identities=20% Similarity=0.301 Sum_probs=75.5
Q ss_pred CCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHh
Q 000129 495 QLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~ 573 (2114)
.+|.-|.+++..++.- ....++.|+-|.|||.+.-+.+-... . .+++.+|+.+-+....+ |...
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~--~------------~~~vtAP~~~a~~~l~~-~~~~ 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA--G------------RAIVTAPAKASTDVLAQ-FAGE 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS--S------------CEEEECSSCCSCHHHHH-HHGG
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH--h------------CcEEECCCHHHHHHHHH-HhhC
Confidence 6899999999987763 23578999999999977666554331 1 36899999986654332 2110
Q ss_pred hccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHH
Q 000129 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQ 653 (2114)
Q Consensus 574 ~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~ 653 (2114)
.|-+..|+. +.. .....+++|||||=.+. -+.+..++
T Consensus 240 -------------------------~i~~~~Pd~---~~~------~~~~~dlliVDEAAaIp---~pll~~ll------ 276 (671)
T 2zpa_A 240 -------------------------KFRFIAPDA---LLA------SDEQADWLVVDEAAAIP---APLLHQLV------ 276 (671)
T ss_dssp -------------------------GCCBCCHHH---HHH------SCCCCSEEEEETGGGSC---HHHHHHHH------
T ss_pred -------------------------CeEEeCchh---hhh------CcccCCEEEEEchhcCC---HHHHHHHH------
Confidence 133445653 221 12347999999998875 33333222
Q ss_pred HhhccccccEEEEccccCChH
Q 000129 654 IETTKEHIRLVGLSATLPNYE 674 (2114)
Q Consensus 654 ~~~~~~~~riv~lSATlpn~~ 674 (2114)
.....|.||.|+..|+
T Consensus 277 -----~~~~~v~~~tTv~GYE 292 (671)
T 2zpa_A 277 -----SRFPRTLLTTTVQGYE 292 (671)
T ss_dssp -----TTSSEEEEEEEBSSTT
T ss_pred -----hhCCeEEEEecCCcCC
Confidence 1334588999988776
No 280
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=87.94 E-value=1.9 Score=52.04 Aligned_cols=31 Identities=35% Similarity=0.447 Sum_probs=20.3
Q ss_pred HHHHHHHHHHcCCC---cEEEEccCCCchHHHHH
Q 000129 499 VQSRVYKSALSSAD---NILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 499 iQ~~~i~~~l~~~~---nvlv~APTGsGKT~~a~ 529 (2114)
...+.+..++..+. .+|+.+|+|+|||.++.
T Consensus 33 ~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 33 FDKETFKSITSKGKIPHIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp HHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHH
T ss_pred HHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHH
Confidence 34455555555433 35777889999998764
No 281
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=87.94 E-value=0.88 Score=54.75 Aligned_cols=17 Identities=41% Similarity=0.663 Sum_probs=15.3
Q ss_pred cEEEEecCCCchHHHHH
Q 000129 1359 NVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1359 nvli~ApTGSGKTl~~~ 1375 (2114)
++++.||+|+|||.++.
T Consensus 48 ~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 69999999999998773
No 282
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=87.81 E-value=0.85 Score=56.40 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=23.2
Q ss_pred cEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEc
Q 000129 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397 (2114)
Q Consensus 1359 nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~ 1397 (2114)
+++|.||+|+|||.++. .+.+.+.. ..+..++++.
T Consensus 46 ~~li~G~~G~GKTtl~~-~l~~~~~~---~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR-KLWELYKD---KTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHH-HHHHHHTT---SCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHhh---hcCeeEEEEe
Confidence 79999999999998773 34444433 1022666665
No 283
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.70 E-value=0.9 Score=56.80 Aligned_cols=45 Identities=18% Similarity=0.324 Sum_probs=28.8
Q ss_pred cEEEEecccccccCC-------chhHHHHHHHHHHHHhhccccccEEEEccc
Q 000129 625 KLLIIDEIHLLHDNR-------GPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2114)
Q Consensus 625 ~liIiDEaH~l~d~r-------g~~le~iv~rl~~~~~~~~~~~riv~lSAT 669 (2114)
.+++|||+|.+...| ......++..++..+........++.+-||
T Consensus 267 ~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aT 318 (428)
T 4b4t_K 267 SIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMAT 318 (428)
T ss_dssp EEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEE
T ss_pred CeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEec
Confidence 588999999886432 234455666666666655455556666666
No 284
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=87.55 E-value=0.8 Score=51.98 Aligned_cols=39 Identities=15% Similarity=0.172 Sum_probs=29.4
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHH
Q 000129 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ra 561 (2114)
.-.+++||-|||||..++-.+.+....+ .+++++.|.+.
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g-----------~kvli~kp~~D 58 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQ-----------YKCLVIKYAKD 58 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTT-----------CCEEEEEETTC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCC-----------CeEEEEeecCC
Confidence 3467899999999998877766665432 37899999864
No 285
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=87.49 E-value=1.5 Score=53.58 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=28.4
Q ss_pred CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEccc
Q 000129 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPL 1399 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Pt 1399 (2114)
.+..++|.||+|||||..+...+...... ++ +++|+.-.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~---g~--~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA---GG--IAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT---TC--CEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC---CC--eEEEEECC
Confidence 46779999999999999876655544433 44 78887644
No 286
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.44 E-value=1.3 Score=57.41 Aligned_cols=18 Identities=28% Similarity=0.530 Sum_probs=16.0
Q ss_pred CcEEEEecCCCchHHHHH
Q 000129 1358 DNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~ 1375 (2114)
..++++||+|+|||.++.
T Consensus 78 ~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 579999999999998874
No 287
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=87.27 E-value=0.66 Score=56.16 Aligned_cols=18 Identities=44% Similarity=0.744 Sum_probs=15.9
Q ss_pred CcEEEEccCCCchHHHHH
Q 000129 512 DNILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~ 529 (2114)
.++|++||+|+|||.++-
T Consensus 52 ~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CEEEEECSSSSCHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 479999999999998764
No 288
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=87.21 E-value=1.5 Score=54.96 Aligned_cols=122 Identities=14% Similarity=0.135 Sum_probs=63.8
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEc--ccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhh
Q 000129 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA--PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKL 1435 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~--Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~ 1435 (2114)
..++++||+|+|||+.+.-.+ ..+.. .++ +++++. +.|.-+.+....|.... |+.+.. .....
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA-~~l~~--~G~--kVllv~~D~~r~~a~eqL~~~~~~~----gv~~~~--~~~~~---- 162 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLA-YFYKK--RGY--KVGLVAADVYRPAAYDQLLQLGNQI----GVQVYG--EPNNQ---- 162 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHH-HHHHH--TTC--CEEEEEECCSCHHHHHHHHHHHHTT----TCCEEC--CTTCS----
T ss_pred eEEEEECCCCCCHHHHHHHHH-HHHHH--cCC--eEEEEecCccchhHHHHHHHHHHhc----CCceee--ccccC----
Confidence 357888999999998764333 23333 234 555544 55666666566555332 333321 11111
Q ss_pred ccCCcEEEEChhhHH-HHHhhhcccccccceeEEEeccccccc--CCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCC
Q 000129 1436 LEKGQIIISTPEKWD-ALSRRWKQRKYVQQVSLFIIDELHLIG--GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512 (2114)
Q Consensus 1436 l~~~~IIV~TPe~l~-~l~r~~~~~~~l~~v~liIiDEaH~l~--~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~ 1512 (2114)
.|..+. ..+.. ....+.+++|||++-++. .+. .++..+..+.....++.-++.++|+..
T Consensus 163 ---------dp~~i~~~al~~----a~~~~~DvvIIDTaGr~~~~~d~-----~lm~el~~i~~~~~pd~vlLVlDa~~g 224 (433)
T 3kl4_A 163 ---------NPIEIAKKGVDI----FVKNKMDIIIVDTAGRHGYGEET-----KLLEEMKEMYDVLKPDDVILVIDASIG 224 (433)
T ss_dssp ---------CHHHHHHHHHHH----TTTTTCSEEEEEECCCSSSCCTT-----HHHHHHHHHHHHHCCSEEEEEEEGGGG
T ss_pred ---------CHHHHHHHHHHH----HHhcCCCEEEEECCCCccccCCH-----HHHHHHHHHHHhhCCcceEEEEeCccc
Confidence 122221 11221 112468999999997654 222 234444444444445566677777753
No 289
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.08 E-value=0.89 Score=56.98 Aligned_cols=46 Identities=13% Similarity=0.178 Sum_probs=27.5
Q ss_pred ccEEEEecccccccCC-------chhHHHHHHHHHHHHhhccccccEEEEccc
Q 000129 624 VKLLIIDEIHLLHDNR-------GPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2114)
Q Consensus 624 v~liIiDEaH~l~d~r-------g~~le~iv~rl~~~~~~~~~~~riv~lSAT 669 (2114)
-.+|+|||+|.+...| .......+..++..+......-+++.+-||
T Consensus 275 P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~AT 327 (437)
T 4b4t_L 275 PCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMAT 327 (437)
T ss_dssp SEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEE
T ss_pred CceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEec
Confidence 3688999999886432 223445555666655544444444555566
No 290
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=86.97 E-value=1.3 Score=55.38 Aligned_cols=121 Identities=17% Similarity=0.178 Sum_probs=61.1
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc--ccHHHHHHHHHHHHHhhccCCcEEEEEeCCCc
Q 000129 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA--PMKALVAEVVGNLSNRLQMYDVKVRELSGDQT 589 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~ia--P~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~ 589 (2114)
..++++||+|+|||+.+.-.+.. +... +.+++++. +.+.-+.++...+... .|+.+. .....
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~-l~~~----------G~kVllv~~D~~r~~a~eqL~~~~~~---~gv~~~--~~~~~ 161 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYF-YKKR----------GYKVGLVAADVYRPAAYDQLLQLGNQ---IGVQVY--GEPNN 161 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHH-HHHT----------TCCEEEEEECCSCHHHHHHHHHHHHT---TTCCEE--CCTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-HHHc----------CCeEEEEecCccchhHHHHHHHHHHh---cCCcee--ecccc
Confidence 35788999999999876543332 2221 12455544 5566565655555543 344332 11111
Q ss_pred cChhhhccceEEEcCHhHH--HHHHhccCCCcccccccEEEEecccccc--cCCchhHHHHHHHHHHHHhhccccccEEE
Q 000129 590 LTRQQIEETQIIVTTPEKW--DIITRKSGDRTYTQLVKLLIIDEIHLLH--DNRGPVLESIVARTVRQIETTKEHIRLVG 665 (2114)
Q Consensus 590 ~~~~~~~~~~IiV~TPek~--d~l~r~~~~~~~l~~v~liIiDEaH~l~--d~rg~~le~iv~rl~~~~~~~~~~~riv~ 665 (2114)
..|..+ +.+.. ......+++|||++-+++ ... .+ +..+........+..-++.
T Consensus 162 -------------~dp~~i~~~al~~-----a~~~~~DvvIIDTaGr~~~~~d~--~l---m~el~~i~~~~~pd~vlLV 218 (433)
T 3kl4_A 162 -------------QNPIEIAKKGVDI-----FVKNKMDIIIVDTAGRHGYGEET--KL---LEEMKEMYDVLKPDDVILV 218 (433)
T ss_dssp -------------SCHHHHHHHHHHH-----TTTTTCSEEEEEECCCSSSCCTT--HH---HHHHHHHHHHHCCSEEEEE
T ss_pred -------------CCHHHHHHHHHHH-----HHhcCCCEEEEECCCCccccCCH--HH---HHHHHHHHHhhCCcceEEE
Confidence 123321 12221 112457999999998765 221 11 1222222222344556677
Q ss_pred EccccC
Q 000129 666 LSATLP 671 (2114)
Q Consensus 666 lSATlp 671 (2114)
++|+..
T Consensus 219 lDa~~g 224 (433)
T 3kl4_A 219 IDASIG 224 (433)
T ss_dssp EEGGGG
T ss_pred EeCccc
Confidence 888754
No 291
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=86.95 E-value=0.42 Score=45.32 Aligned_cols=53 Identities=19% Similarity=0.219 Sum_probs=46.2
Q ss_pred CccccCCCCCHHHHHHHHhCCCchhhhccCChHHhhhhhcCchh-HHHHHHHHhc
Q 000129 1142 TPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKM-GRTLHKFVHQ 1195 (2114)
Q Consensus 1142 ~~l~q~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~ 1195 (2114)
+.|..+||||+...++|-++==+++.+...+.+||.++++ .+. ++.|++++|.
T Consensus 18 s~L~~IpGIG~kr~~~LL~~FgSl~~i~~AS~eEL~~vig-~~~~A~~I~~~l~~ 71 (84)
T 1z00_B 18 DFLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILG-NAANAKQLYDFIHT 71 (84)
T ss_dssp HHHHTCSSCCHHHHHHHHHHSSCHHHHHHSCHHHHHHHHS-CHHHHHHHHHHHTS
T ss_pred HHHHhCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHHhC-chHHHHHHHHHHHh
Confidence 5689999999999999987644789999999999999998 556 9999999974
No 292
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.92 E-value=1.2 Score=55.12 Aligned_cols=45 Identities=18% Similarity=0.274 Sum_probs=28.5
Q ss_pred cEEEEecccccccCC-------chhHHHHHHHHHHHHhhccccccEEEEccc
Q 000129 625 KLLIIDEIHLLHDNR-------GPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2114)
Q Consensus 625 ~liIiDEaH~l~d~r-------g~~le~iv~rl~~~~~~~~~~~riv~lSAT 669 (2114)
.+|+|||+|.+...| .......+..++..+......-.++.+-||
T Consensus 277 ~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaAT 328 (437)
T 4b4t_I 277 SIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMAT 328 (437)
T ss_dssp EEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEE
T ss_pred cEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeC
Confidence 589999999886533 123445555666555554455566667677
No 293
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=86.81 E-value=0.88 Score=55.89 Aligned_cols=20 Identities=40% Similarity=0.625 Sum_probs=16.9
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 000129 511 ADNILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l 530 (2114)
..++|++||+|+|||.++-.
T Consensus 117 ~~~vLl~GppGtGKT~la~a 136 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKC 136 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 45799999999999987743
No 294
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=86.75 E-value=0.46 Score=45.07 Aligned_cols=53 Identities=13% Similarity=0.335 Sum_probs=44.7
Q ss_pred CccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHH-HHHHHHHHhc
Q 000129 1933 SMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQ-LLDIARFCNR 1991 (2114)
Q Consensus 1933 s~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~-~~~i~~~~~~ 1991 (2114)
+.|..|||||+.+.++|-++ +.|+.+|.+++.++...+ ++.+. .+.|.+|++.
T Consensus 18 s~L~~IpGIG~kr~~~LL~~----FgSl~~i~~AS~eEL~~v--ig~~~~A~~I~~~l~~ 71 (84)
T 1z00_B 18 DFLLKMPGVNAKNCRSLMHH----VKNIAELAALSQDELTSI--LGNAANAKQLYDFIHT 71 (84)
T ss_dssp HHHHTCSSCCHHHHHHHHHH----SSCHHHHHHSCHHHHHHH--HSCHHHHHHHHHHHTS
T ss_pred HHHHhCCCCCHHHHHHHHHH----cCCHHHHHHCCHHHHHHH--hCchHHHHHHHHHHHh
Confidence 45889999999999997764 679999999999999999 45666 7889999863
No 295
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=86.69 E-value=0.67 Score=56.95 Aligned_cols=20 Identities=30% Similarity=0.647 Sum_probs=17.1
Q ss_pred CCCcEEEEecCCCchHHHHH
Q 000129 1356 TDDNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~ 1375 (2114)
...++++.||+|+|||.++.
T Consensus 116 ~~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 35689999999999998774
No 296
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.45 E-value=2.1 Score=52.06 Aligned_cols=27 Identities=41% Similarity=0.668 Sum_probs=19.6
Q ss_pred HHHHHHcCC--CcEEEEccCCCchHHHHH
Q 000129 503 VYKSALSSA--DNILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 503 ~i~~~l~~~--~nvlv~APTGsGKT~~a~ 529 (2114)
.+..++..+ .+++++||+|+|||..+.
T Consensus 48 ~l~~~l~~~~~~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 48 VLKKTLKSANLPHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp HHHHHTTCTTCCCEEEECSTTSSHHHHHH
T ss_pred HHHHHHhcCCCCEEEEECCCCCCHHHHHH
Confidence 344444444 569999999999998764
No 297
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=86.41 E-value=2.2 Score=51.22 Aligned_cols=32 Identities=25% Similarity=0.442 Sum_probs=21.8
Q ss_pred HHHHHHHHHHcCCC--cEEEEccCCCchHHHHHH
Q 000129 499 VQSRVYKSALSSAD--NILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 499 iQ~~~i~~~l~~~~--nvlv~APTGsGKT~~a~l 530 (2114)
-..+.+..++.++. +++++||+|+|||.++..
T Consensus 32 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~ 65 (327)
T 1iqp_A 32 HIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALA 65 (327)
T ss_dssp HHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHH
Confidence 33444444554433 699999999999987643
No 298
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=86.36 E-value=1.5 Score=54.85 Aligned_cols=120 Identities=16% Similarity=0.210 Sum_probs=62.4
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc--ccHHHHHHHHHHHHHhhccCCcEEEEEeCCCcc
Q 000129 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA--PMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590 (2114)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~ia--P~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~ 590 (2114)
.+++++|+|+|||+++.-.+. .+... +.+++++. |.|+-+.++...+... .|+.+... +..
T Consensus 102 vIlivG~~G~GKTTt~~kLA~-~l~~~----------G~kVllv~~D~~R~aa~eqL~~~~~~---~gvpv~~~--~~~- 164 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLAR-YFQKR----------GYKVGVVCSDTWRPGAYHQLRQLLDR---YHIEVFGN--PQE- 164 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHH-HHHTT----------TCCEEEEECCCSSTHHHHHHHHHHGG---GTCEEECC--TTC-
T ss_pred EEEEECcCCCCHHHHHHHHHH-HHHHC----------CCeEEEEeCCCcchhHHHHHHHHHHh---cCCcEEec--CCC-
Confidence 588999999999988654332 23221 22555554 6777677766666554 35544321 111
Q ss_pred ChhhhccceEEEcCHhHH--HHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEcc
Q 000129 591 TRQQIEETQIIVTTPEKW--DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSA 668 (2114)
Q Consensus 591 ~~~~~~~~~IiV~TPek~--d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSA 668 (2114)
..|..+ +.+... .-..++++|||.+=.++.. +.++..+........+..-++.++|
T Consensus 165 ------------~dp~~i~~~al~~a-----~~~~~DvVIIDTaGrl~~d-----~~lm~el~~i~~~~~pd~vlLVvDA 222 (443)
T 3dm5_A 165 ------------KDAIKLAKEGVDYF-----KSKGVDIIIVDTAGRHKED-----KALIEEMKQISNVIHPHEVILVIDG 222 (443)
T ss_dssp ------------CCHHHHHHHHHHHH-----HHTTCSEEEEECCCCSSCC-----HHHHHHHHHHHHHHCCSEEEEEEEG
T ss_pred ------------CCHHHHHHHHHHHH-----HhCCCCEEEEECCCcccch-----HHHHHHHHHHHHhhcCceEEEEEeC
Confidence 123321 122111 1123789999999654321 1122222222222344556777888
Q ss_pred ccC
Q 000129 669 TLP 671 (2114)
Q Consensus 669 Tlp 671 (2114)
|..
T Consensus 223 ~~g 225 (443)
T 3dm5_A 223 TIG 225 (443)
T ss_dssp GGG
T ss_pred CCc
Confidence 864
No 299
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=86.36 E-value=4.3 Score=49.70 Aligned_cols=18 Identities=39% Similarity=0.610 Sum_probs=15.3
Q ss_pred cEEEEccCCCchHHHHHH
Q 000129 513 NILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 513 nvlv~APTGsGKT~~a~l 530 (2114)
.++++||+|+|||..+..
T Consensus 40 ~~ll~G~~G~GKT~la~~ 57 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARL 57 (373)
T ss_dssp EEEEESCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 479999999999987743
No 300
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=86.29 E-value=2.3 Score=50.54 Aligned_cols=19 Identities=47% Similarity=0.690 Sum_probs=16.5
Q ss_pred CCcEEEEccCCCchHHHHH
Q 000129 511 ADNILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~ 529 (2114)
..+++++||+|+|||..+-
T Consensus 54 ~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 4679999999999998764
No 301
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=86.25 E-value=1.2 Score=54.12 Aligned_cols=144 Identities=13% Similarity=0.176 Sum_probs=72.5
Q ss_pred HcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCC
Q 000129 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGD 587 (2114)
Q Consensus 508 l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd 587 (2114)
+..++-++|.|++|+|||..++-.+.+.... +.+++|+..--. ..|+..++.......+..- ...|.
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~-----------g~~Vl~fSlEms-~~ql~~Rlls~~~~v~~~~-l~~g~ 109 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALND-----------DRGVAVFSLEMS-AEQLALRALSDLTSINMHD-LESGR 109 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHT-----------TCEEEEEESSSC-HHHHHHHHHHHHHCCCHHH-HHHTC
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-----------CCeEEEEeCCCC-HHHHHHHHHHHhhCCCHHH-HhcCC
Confidence 4556778999999999998876666555442 126777754322 3444444433221111100 01122
Q ss_pred CccCh-h-------hhccceEEE-cCH----hHHHHHHhccCCCcccc-cccEEEEeccccccc-----CCchhHHHHHH
Q 000129 588 QTLTR-Q-------QIEETQIIV-TTP----EKWDIITRKSGDRTYTQ-LVKLLIIDEIHLLHD-----NRGPVLESIVA 648 (2114)
Q Consensus 588 ~~~~~-~-------~~~~~~IiV-~TP----ek~d~l~r~~~~~~~l~-~v~liIiDEaH~l~d-----~rg~~le~iv~ 648 (2114)
.+... + ......+.| .+| +.+....|+.. .-. .+++||||-+++|.. .+...+..+..
T Consensus 110 Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~---~~~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr 186 (338)
T 4a1f_A 110 LDDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLK---SQHKELGIAFIDYLQLMSGSKATKERHEQIAEISR 186 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHH---HHCTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHH---HhcCCCCEEEEechHHhcCCCCCCChHHHHHHHHH
Confidence 11110 0 112334544 344 33322222211 111 589999999999854 23344555555
Q ss_pred HHHHHHhhccccccEEEEccc
Q 000129 649 RTVRQIETTKEHIRLVGLSAT 669 (2114)
Q Consensus 649 rl~~~~~~~~~~~riv~lSAT 669 (2114)
.+..... ..++.+|++|-.
T Consensus 187 ~LK~lAk--el~vpVi~lsQl 205 (338)
T 4a1f_A 187 ELKTLAR--ELEIPIIALVQL 205 (338)
T ss_dssp HHHHHHH--HHTSCEEEEEEC
T ss_pred HHHHHHH--HcCCeEEEEEec
Confidence 5543333 246777777765
No 302
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=86.18 E-value=1.8 Score=55.05 Aligned_cols=46 Identities=20% Similarity=0.310 Sum_probs=26.5
Q ss_pred ccEEEEecccccccCCch-------hHHHHHHHHHHHHhhccccccEEEEccc
Q 000129 624 VKLLIIDEIHLLHDNRGP-------VLESIVARTVRQIETTKEHIRLVGLSAT 669 (2114)
Q Consensus 624 v~liIiDEaH~l~d~rg~-------~le~iv~rl~~~~~~~~~~~riv~lSAT 669 (2114)
..+|+|||+|.+...++. ..+..+..++..+........++.+.||
T Consensus 109 p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaT 161 (476)
T 2ce7_A 109 PCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAAT 161 (476)
T ss_dssp SEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEE
T ss_pred CCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEec
Confidence 469999999998764432 2234455555544433334456666666
No 303
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=86.00 E-value=0.63 Score=53.62 Aligned_cols=143 Identities=13% Similarity=0.107 Sum_probs=66.0
Q ss_pred CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC-------CCcEEEEEcCC
Q 000129 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG-------LGMRVVELTGE 1428 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~-------~g~~v~~l~G~ 1428 (2114)
.+..++|+|++|+|||..+...+.+.+... +. +++|+.-. .-..++.+++. .++.. ..+.+......
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~--~~--~v~~~s~E-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~ 102 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GE--PGVFVTLE-ERARDLRREMA-SFGWDFEKYEKEGKIAIVDGVSS 102 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHH--CC--CEEEEESS-SCHHHHHHHHH-TTTCCHHHHHHTTSEEEEC----
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhc--CC--Cceeeccc-CCHHHHHHHHH-HcCCChHHHHhcCcchhhhhHHH
Confidence 467899999999999988766555544441 23 56776533 22344444443 12110 01111111000
Q ss_pred cccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC--CCCchHHHHHHHHHHHHhhcCCCceEEE
Q 000129 1429 TAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG--QGGPVLEVIVSRMRYIASQVENKIRIVA 1506 (2114)
Q Consensus 1429 ~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~--~~g~~le~i~srl~~i~~~~~~~~riV~ 1506 (2114)
..............-.+++.+....+.. ..-...+++|+|-...+.. .....+..++..++.+.... ++.+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~--~i~vi~ 177 (251)
T 2zts_A 103 VVGLPSEEKFVLEDRFNVDNFLRYIYRV---VKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEM--GVTTIL 177 (251)
T ss_dssp ---------------CCHHHHHHHHHHH---HHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHH--CCEEEE
T ss_pred HhhcccchhccccccccHHHHHHHHHHH---HHhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHc--CCCeEE
Confidence 0000000000001112223332222221 1223568999999986642 23344555666666665543 566666
Q ss_pred Ecc
Q 000129 1507 LST 1509 (2114)
Q Consensus 1507 lSA 1509 (2114)
++-
T Consensus 178 ~~q 180 (251)
T 2zts_A 178 TTE 180 (251)
T ss_dssp EEC
T ss_pred EEE
Confidence 654
No 304
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=85.66 E-value=1 Score=54.43 Aligned_cols=19 Identities=26% Similarity=0.513 Sum_probs=16.3
Q ss_pred CCcEEEEecCCCchHHHHH
Q 000129 1357 DDNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~ 1375 (2114)
...+++.||+|+|||..+.
T Consensus 45 ~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 3579999999999998773
No 305
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=85.62 E-value=1.9 Score=52.90 Aligned_cols=19 Identities=26% Similarity=0.620 Sum_probs=16.4
Q ss_pred CCcEEEEecCCCchHHHHH
Q 000129 1357 DDNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~ 1375 (2114)
..++++.||+|+|||.++-
T Consensus 84 ~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCEEEECSTTSCHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 4579999999999998873
No 306
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=85.53 E-value=1.9 Score=50.09 Aligned_cols=20 Identities=30% Similarity=0.596 Sum_probs=16.9
Q ss_pred CCCcEEEEecCCCchHHHHH
Q 000129 1356 TDDNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~ 1375 (2114)
...++++.||+|+|||.++.
T Consensus 38 ~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 45679999999999998774
No 307
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=85.51 E-value=1.2 Score=58.57 Aligned_cols=116 Identities=22% Similarity=0.289 Sum_probs=74.6
Q ss_pred CCCHHHHHHHHHHHcC-CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000129 1341 HFNPIQTQVFTVLYNT-DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~-~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g 1419 (2114)
.+|.-|.+++..++.- ....+|.|+-|.|||.+.-+++-. +. + ++++.+|+.+-+....+ +. +.
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~-~~-----~--~~~vtAP~~~a~~~l~~-~~---~~--- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISR-IA-----G--RAIVTAPAKASTDVLAQ-FA---GE--- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHH-SS-----S--CEEEECSSCCSCHHHHH-HH---GG---
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHH-HH-----h--CcEEECCCHHHHHHHHH-Hh---hC---
Confidence 6899999999998762 345789999999999766555542 21 2 46999999887764433 21 10
Q ss_pred cEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcC
Q 000129 1420 MRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVE 1499 (2114)
Q Consensus 1420 ~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~ 1499 (2114)
.|-+..|..+ .. .....+++|||||=.+. +..++.+..
T Consensus 240 --------------------~i~~~~Pd~~---~~------~~~~~dlliVDEAAaIp----------~pll~~ll~--- 277 (671)
T 2zpa_A 240 --------------------KFRFIAPDAL---LA------SDEQADWLVVDEAAAIP----------APLLHQLVS--- 277 (671)
T ss_dssp --------------------GCCBCCHHHH---HH------SCCCCSEEEEETGGGSC----------HHHHHHHHT---
T ss_pred --------------------CeEEeCchhh---hh------CcccCCEEEEEchhcCC----------HHHHHHHHh---
Confidence 1334456542 11 23458999999999885 222333322
Q ss_pred CCceEEEEcccCCCh
Q 000129 1500 NKIRIVALSTSLANA 1514 (2114)
Q Consensus 1500 ~~~riV~lSATl~n~ 1514 (2114)
....|+||.|+...
T Consensus 278 -~~~~v~~~tTv~GY 291 (671)
T 2zpa_A 278 -RFPRTLLTTTVQGY 291 (671)
T ss_dssp -TSSEEEEEEEBSST
T ss_pred -hCCeEEEEecCCcC
Confidence 34458888888543
No 308
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=85.45 E-value=2.9 Score=49.94 Aligned_cols=94 Identities=11% Similarity=0.066 Sum_probs=52.7
Q ss_pred CCCceEEEechHhhhhcC-----CCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCC--CCCceEEEEEcCCCc
Q 000129 818 DGHVQVLVSTATLAWGVN-----LPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQ--YDSYGEGIIITGHSE 890 (2114)
Q Consensus 818 ~g~i~VLVaT~tla~GVd-----lP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g--~d~~G~~iil~~~~e 890 (2114)
+....+.+.|+...-|+| +-+.++||-++.-+||.. +.+|.+-||-|.| ..+.-.+|.+++...
T Consensus 168 ~~~~~i~Lltsag~~gin~~~~nl~~aD~VI~~DsdwNp~~---------d~iQa~~r~~R~~~gq~k~v~V~RLvt~~T 238 (328)
T 3hgt_A 168 DFSCTVHLFSSEGINFTKYPIKSKARFDMLICLDTTVDTSQ---------KDIQYLLQYKRERKGLERYAPIVRLVAINS 238 (328)
T ss_dssp CCSEEEEEEESSCCCTTTSCCCCCSCCSEEEECSTTCCTTS---------HHHHHHHCCC---------CCEEEEEETTS
T ss_pred cCCceEEEEECCCCCCcCcccccCCCCCEEEEECCCCCCCC---------hHHHHHHHHhhhccCCCCcceEEEEeCCCC
Confidence 455566565766666676 566777887666666654 5677666776653 245667888888776
Q ss_pred HHHHHHhhcCCCcccchhhHhhHHHHHHHHhh
Q 000129 891 LRYYLSLMNQQLPIESQFVSKLADQLNAEIVL 922 (2114)
Q Consensus 891 ~~~~~~ll~~~~pies~l~~~l~d~l~~ei~~ 922 (2114)
.+...-.+... .++.-...+...+++-+++
T Consensus 239 iEh~~l~~~~~--~~~~~~~~l~k~i~a~v~l 268 (328)
T 3hgt_A 239 IDHCRLFFGKK--FDKNSREYLENVTAAMVIL 268 (328)
T ss_dssp HHHHHHHHHHH--TCTTCHHHHHHHHHHHHHG
T ss_pred HHHHHHHccCC--CCcchHHHHHHHHHHHHHH
Confidence 66554333221 1233334555666665544
No 309
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=85.34 E-value=2 Score=49.12 Aligned_cols=42 Identities=19% Similarity=0.164 Sum_probs=27.0
Q ss_pred CCCcEEEEecCCCchHHHHHHHHHHHhhhcc---CCCceEEEEEccc
Q 000129 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKAS---ETGVMRAVYIAPL 1399 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~l~il~~l~~~~---~~~~~k~l~I~Pt 1399 (2114)
.++.++|.||+|+|||..+...+...+.... ..+ .++|+.-.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~--~~~~i~~~ 67 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEG--KAMYIDTE 67 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSS--EEEEEESS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCC--eEEEEECC
Confidence 4677999999999999887554443222100 123 67887543
No 310
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=85.34 E-value=1.9 Score=53.22 Aligned_cols=17 Identities=29% Similarity=0.286 Sum_probs=15.3
Q ss_pred cEEEEccCCCchHHHHH
Q 000129 513 NILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 513 nvlv~APTGsGKT~~a~ 529 (2114)
+++++||+|+|||..+-
T Consensus 46 ~~li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR 62 (389)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 69999999999998764
No 311
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=85.30 E-value=1.3 Score=53.92 Aligned_cols=43 Identities=33% Similarity=0.288 Sum_probs=29.2
Q ss_pred CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHH
Q 000129 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La 1403 (2114)
.+..++|.+|+|||||..+...+.. +.. .++ +++|+.....+-
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~-~~~--~gg--~VlyId~E~s~~ 102 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE-AQK--MGG--VAAFIDAEHALD 102 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH-HHH--TTC--CEEEEESSCCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH-HHh--cCC--eEEEEecccccc
Confidence 3567899999999999877544433 332 244 788887655443
No 312
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.28 E-value=3.7 Score=50.62 Aligned_cols=19 Identities=32% Similarity=0.649 Sum_probs=16.4
Q ss_pred CCCcEEEEecCCCchHHHH
Q 000129 1356 TDDNVLVAAPTGSGKTICS 1374 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~ 1374 (2114)
....+|+.||+|+|||+.+
T Consensus 181 ~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CCCCEEEESCSSSSHHHHH
T ss_pred CCCceEEeCCCCCCHHHHH
Confidence 3456999999999999876
No 313
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=85.12 E-value=0.77 Score=53.96 Aligned_cols=19 Identities=37% Similarity=0.410 Sum_probs=16.4
Q ss_pred CCcEEEEecCCCchHHHHH
Q 000129 1357 DDNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~ 1375 (2114)
..++++.||+|+|||.++.
T Consensus 64 ~~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEEECSTTSSHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 4579999999999998874
No 314
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=85.11 E-value=2.7 Score=48.67 Aligned_cols=19 Identities=37% Similarity=0.672 Sum_probs=16.2
Q ss_pred CCcEEEEccCCCchHHHHH
Q 000129 511 ADNILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~ 529 (2114)
..+++++||+|+|||..+-
T Consensus 45 ~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 4579999999999998764
No 315
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=85.08 E-value=2.2 Score=54.13 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=23.0
Q ss_pred HcCCCcEEEEccCCCchHHHHHHHHHHHHH
Q 000129 508 LSSADNILLCAPTGAGKTNVAVLTILQQLA 537 (2114)
Q Consensus 508 l~~~~nvlv~APTGsGKT~~a~l~il~~l~ 537 (2114)
+..++-++|.||+|+|||..++..+.....
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~ 229 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVAT 229 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 445677899999999999887666655544
No 316
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.06 E-value=0.96 Score=56.61 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=27.7
Q ss_pred cEEEEecccccccCCc-------hhHHHHHHHHHHHHhhccccccEEEEccc
Q 000129 625 KLLIIDEIHLLHDNRG-------PVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2114)
Q Consensus 625 ~liIiDEaH~l~d~rg-------~~le~iv~rl~~~~~~~~~~~riv~lSAT 669 (2114)
.+|+|||+|.+...|+ ......+..++..+......-+++.+-||
T Consensus 276 ~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaT 327 (434)
T 4b4t_M 276 TIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAAT 327 (434)
T ss_dssp EEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEEC
T ss_pred eEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeC
Confidence 5899999998865331 23344555566655554455556666666
No 317
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=85.05 E-value=1.8 Score=54.13 Aligned_cols=122 Identities=16% Similarity=0.195 Sum_probs=65.3
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEc--ccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhh
Q 000129 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA--PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKL 1435 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~--Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~ 1435 (2114)
..++++|++|+|||+.+.- +...+.. .+. +++++. |.|.-+.++...|.... |+.+.... ..
T Consensus 101 ~vIlivG~~G~GKTTt~~k-LA~~l~~--~G~--kVllv~~D~~R~aa~eqL~~~~~~~----gvpv~~~~--~~----- 164 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAK-LARYFQK--RGY--KVGVVCSDTWRPGAYHQLRQLLDRY----HIEVFGNP--QE----- 164 (443)
T ss_dssp EEEEEECCTTSSHHHHHHH-HHHHHHT--TTC--CEEEEECCCSSTHHHHHHHHHHGGG----TCEEECCT--TC-----
T ss_pred eEEEEECcCCCCHHHHHHH-HHHHHHH--CCC--eEEEEeCCCcchhHHHHHHHHHHhc----CCcEEecC--CC-----
Confidence 3578899999999987633 2333433 233 555554 66777777677666432 44443211 11
Q ss_pred ccCCcEEEEChhhHH-HHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCC
Q 000129 1436 LEKGQIIISTPEKWD-ALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512 (2114)
Q Consensus 1436 l~~~~IIV~TPe~l~-~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~ 1512 (2114)
..|..+. ..+.... -..++++|||.+=.+..+ +.+...++.+.....+..-++.++||..
T Consensus 165 --------~dp~~i~~~al~~a~----~~~~DvVIIDTaGrl~~d-----~~lm~el~~i~~~~~pd~vlLVvDA~~g 225 (443)
T 3dm5_A 165 --------KDAIKLAKEGVDYFK----SKGVDIIIVDTAGRHKED-----KALIEEMKQISNVIHPHEVILVIDGTIG 225 (443)
T ss_dssp --------CCHHHHHHHHHHHHH----HTTCSEEEEECCCCSSCC-----HHHHHHHHHHHHHHCCSEEEEEEEGGGG
T ss_pred --------CCHHHHHHHHHHHHH----hCCCCEEEEECCCcccch-----HHHHHHHHHHHHhhcCceEEEEEeCCCc
Confidence 1232221 1222211 134789999998544321 1244444444444445566777888764
No 318
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=84.95 E-value=1.3 Score=53.32 Aligned_cols=52 Identities=15% Similarity=0.052 Sum_probs=33.4
Q ss_pred HcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 508 l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
+..++-++|+|++|+|||..++..+.+...++ .+++|+.-- .-..|+..++.
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g-----------~~vl~~slE-~s~~~l~~R~~ 116 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDND-----------DVVNLHSLE-MGKKENIKRLI 116 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT-----------CEEEEEESS-SCHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC-----------CeEEEEECC-CCHHHHHHHHH
Confidence 44567799999999999988776665554332 268888643 22344444443
No 319
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=84.80 E-value=1.2 Score=53.01 Aligned_cols=20 Identities=30% Similarity=0.614 Sum_probs=17.1
Q ss_pred CCCcEEEEecCCCchHHHHH
Q 000129 1356 TDDNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~ 1375 (2114)
...++++.||+|+|||.++.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHH
Confidence 35689999999999998773
No 320
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.77 E-value=1.2 Score=53.35 Aligned_cols=17 Identities=24% Similarity=0.471 Sum_probs=15.1
Q ss_pred cEEEEecCCCchHHHHH
Q 000129 1359 NVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1359 nvli~ApTGSGKTl~~~ 1375 (2114)
++++.||+|+|||.++.
T Consensus 44 ~~ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVH 60 (323)
T ss_dssp CEEEECSTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 59999999999998774
No 321
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=84.66 E-value=1.1 Score=53.33 Aligned_cols=91 Identities=11% Similarity=0.126 Sum_probs=55.0
Q ss_pred cEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhhccC
Q 000129 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEK 1438 (2114)
Q Consensus 1359 nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~l~~ 1438 (2114)
.++|.+|+|+|||..++..+.+.... ..++ +++|+....++.... ++ +++ +. .
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~-g~g~--~vlyId~E~s~~~~r---a~-~lG----vd----------------~ 82 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ-YPDA--VCLFYDSEFGITPAY---LR-SMG----VD----------------P 82 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH-CTTC--EEEEEESSCCCCHHH---HH-HTT----CC----------------G
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc-CCCc--eEEEEeccchhhHHH---HH-HhC----CC----------------H
Confidence 58999999999999987776665543 2244 899998776664332 22 443 21 0
Q ss_pred CcEEEEChhhHHHH----HhhhcccccccceeEEEeccccccc
Q 000129 1439 GQIIISTPEKWDAL----SRRWKQRKYVQQVSLFIIDELHLIG 1477 (2114)
Q Consensus 1439 ~~IIV~TPe~l~~l----~r~~~~~~~l~~v~liIiDEaH~l~ 1477 (2114)
.+++++.|.....+ ...... ..-..+++||||=+..+.
T Consensus 83 d~llv~~~~~~E~~~l~i~~~l~~-i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 83 ERVIHTPVQSLEQLRIDMVNQLDA-IERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp GGEEEEECSBHHHHHHHHHHHHHT-CCTTCCEEEEEECSTTCB
T ss_pred HHeEEEcCCCHHHHHHHHHHHHHH-hhccCceEEEEecccccc
Confidence 13555555444333 222100 111358999999999774
No 322
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=84.64 E-value=5.1 Score=45.20 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=19.0
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHH
Q 000129 510 SADNILLCAPTGAGKTNVAVLTILQ 534 (2114)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l~il~ 534 (2114)
.++.+++.||+|||||..+...+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4567899999999999876554433
No 323
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.58 E-value=1.7 Score=52.04 Aligned_cols=29 Identities=14% Similarity=0.227 Sum_probs=20.3
Q ss_pred HHHHHHHcCC--CcEEEEccCCCchHHHHHH
Q 000129 502 RVYKSALSSA--DNILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 502 ~~i~~~l~~~--~nvlv~APTGsGKT~~a~l 530 (2114)
+.+..++..+ .+++++||+|+|||..+..
T Consensus 31 ~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~ 61 (323)
T 1sxj_B 31 DRLQQIAKDGNMPHMIISGMPGIGKTTSVHC 61 (323)
T ss_dssp HHHHHHHHSCCCCCEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHcCCCCeEEEECcCCCCHHHHHHH
Confidence 3444445443 3599999999999987643
No 324
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=84.57 E-value=2.7 Score=51.67 Aligned_cols=20 Identities=40% Similarity=0.639 Sum_probs=16.8
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 000129 511 ADNILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l 530 (2114)
..+++++||+|+|||..+..
T Consensus 45 ~~~vli~G~~G~GKTtl~~~ 64 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKF 64 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 45799999999999987644
No 325
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=84.54 E-value=1.8 Score=49.09 Aligned_cols=40 Identities=15% Similarity=0.054 Sum_probs=29.0
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHH
Q 000129 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEA 1401 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~ 1401 (2114)
+.-.++.||-|||||+.++-.+.+.... +. +++++.|.+.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~---g~--kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIA---QY--KCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTT---TC--CEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHC---CC--eEEEEeecCC
Confidence 3446788999999998876666655433 33 8899998764
No 326
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.42 E-value=1.6 Score=54.57 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=28.0
Q ss_pred ccEEEEecccccccCCc-------hhHHHHHHHHHHHHhhccccccEEEEccc
Q 000129 624 VKLLIIDEIHLLHDNRG-------PVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2114)
Q Consensus 624 v~liIiDEaH~l~d~rg-------~~le~iv~rl~~~~~~~~~~~riv~lSAT 669 (2114)
-.+|+|||++.+...|+ ......+..++..+......-.++.+-||
T Consensus 303 P~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaAT 355 (467)
T 4b4t_H 303 ACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFAT 355 (467)
T ss_dssp SEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEEC
T ss_pred CceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCC
Confidence 36899999998865331 22333444555555544455567777777
No 327
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=83.96 E-value=2.6 Score=51.72 Aligned_cols=39 Identities=31% Similarity=0.502 Sum_probs=24.6
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEc
Q 000129 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~ 1397 (2114)
..+++|.||+|+|||..+.. +.+.+...... +..++++.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~-l~~~~~~~~~~-~~~~~~i~ 83 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKF-VLSKLHKKFLG-KFKHVYIN 83 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHH-HHHHHHHHTCS-SCEEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHHHhcC-CceEEEEE
Confidence 56799999999999987743 44444331110 22566665
No 328
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=83.62 E-value=0.98 Score=55.45 Aligned_cols=18 Identities=44% Similarity=0.744 Sum_probs=15.9
Q ss_pred CcEEEEccCCCchHHHHH
Q 000129 512 DNILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~ 529 (2114)
.++|++||+|+|||.++-
T Consensus 85 ~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCEEEECSTTSCHHHHHH
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 469999999999998874
No 329
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=83.44 E-value=2.9 Score=52.95 Aligned_cols=30 Identities=20% Similarity=0.197 Sum_probs=22.8
Q ss_pred HcCCCcEEEEccCCCchHHHHHHHHHHHHH
Q 000129 508 LSSADNILLCAPTGAGKTNVAVLTILQQLA 537 (2114)
Q Consensus 508 l~~~~nvlv~APTGsGKT~~a~l~il~~l~ 537 (2114)
+..++-++|+|++|+|||..++..+.....
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~ 226 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAAL 226 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 445677899999999999877666655544
No 330
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.38 E-value=1.6 Score=53.10 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=15.7
Q ss_pred CcEEEEecCCCchHHHHH
Q 000129 1358 DNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~ 1375 (2114)
.++++.||+|+|||.++.
T Consensus 59 ~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 459999999999998773
No 331
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=83.35 E-value=1.2 Score=53.37 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=17.6
Q ss_pred cCCCcEEEEecCCCchHHHHH
Q 000129 1355 NTDDNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~~~ 1375 (2114)
.....+++.||+|+|||.++-
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHH
Confidence 345679999999999998773
No 332
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=83.32 E-value=1 Score=53.90 Aligned_cols=20 Identities=35% Similarity=0.635 Sum_probs=17.0
Q ss_pred CCCcEEEEccCCCchHHHHH
Q 000129 510 SADNILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~ 529 (2114)
....++++||+|+|||..+-
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHH
Confidence 45679999999999998764
No 333
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=83.30 E-value=2.3 Score=50.57 Aligned_cols=18 Identities=22% Similarity=0.178 Sum_probs=15.6
Q ss_pred CcEEEEecCCCchHHHHH
Q 000129 1358 DNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~ 1375 (2114)
..+++.||+|+|||..+.
T Consensus 37 ~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp SEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999998774
No 334
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=83.11 E-value=3.1 Score=46.63 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=19.0
Q ss_pred CCCcEEEEccCCCchHHHHHHHHH
Q 000129 510 SADNILLCAPTGAGKTNVAVLTIL 533 (2114)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l~il 533 (2114)
.++-+++.||+|+|||..+...+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999988765544
No 335
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=83.06 E-value=3.9 Score=48.88 Aligned_cols=42 Identities=12% Similarity=0.093 Sum_probs=26.4
Q ss_pred cccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEc
Q 000129 619 TYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (2114)
Q Consensus 619 ~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lS 667 (2114)
......+++||||+|.|.. ... ..+++.++..++...+|+.+
T Consensus 78 p~~~~~kvviIdead~lt~---~a~----naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 78 PELYTRKYVIVHDCERMTQ---QAA----NAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp CSSSSSEEEEETTGGGBCH---HHH----HHTHHHHHSCCTTEEEEEEE
T ss_pred cccCCceEEEeccHHHhCH---HHH----HHHHHHHhCCCCCeEEEEEE
Confidence 3445679999999999852 222 23445556555566666654
No 336
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=82.87 E-value=1.7 Score=48.68 Aligned_cols=40 Identities=15% Similarity=-0.028 Sum_probs=26.5
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHH
Q 000129 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEA 1401 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~ 1401 (2114)
+.-.++.||-|||||+..+-.+.+.... +. +++++.|...
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~---g~--kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYA---KQ--KVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT---TC--CEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc---CC--ceEEEEeccC
Confidence 4557889999999998665444443322 33 7899999764
No 337
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=82.85 E-value=2.1 Score=47.38 Aligned_cols=41 Identities=22% Similarity=0.219 Sum_probs=32.8
Q ss_pred cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccH
Q 000129 509 SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMK 560 (2114)
Q Consensus 509 ~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~r 560 (2114)
....++++..++|.|||.+|+-..++.+..+ .+++++.-.+
T Consensus 26 ~~~g~i~v~tG~GkGKTTaA~GlalRA~g~G-----------~rV~~vQF~K 66 (196)
T 1g5t_A 26 EERGIIIVFTGNGKGKTTAAFGTAARAVGHG-----------KNVGVVQFIK 66 (196)
T ss_dssp -CCCCEEEEESSSSCHHHHHHHHHHHHHHTT-----------CCEEEEESSC
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHHHCC-----------CeEEEEEeeC
Confidence 3456899999999999999998888888764 3788886555
No 338
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=82.06 E-value=5 Score=47.59 Aligned_cols=48 Identities=8% Similarity=0.251 Sum_probs=26.4
Q ss_pred cccceeEEEecccccccCC-----CCchHHHHHHHHHHHHhhcCCCceEEEEccc
Q 000129 1461 YVQQVSLFIIDELHLIGGQ-----GGPVLEVIVSRMRYIASQVENKIRIVALSTS 1510 (2114)
Q Consensus 1461 ~l~~v~liIiDEaH~l~~~-----~g~~le~i~srl~~i~~~~~~~~riV~lSAT 1510 (2114)
...+.++||+||...+.+. .......+...++.+.... ++-+|++|-.
T Consensus 144 ~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~--~~~vi~vsh~ 196 (296)
T 1cr0_A 144 SGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKST--GVVLVVICHL 196 (296)
T ss_dssp HTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHH--CCEEEEEEEC
T ss_pred HhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHh--CCeEEEEEec
Confidence 3457899999999976421 1133445666666664432 4556666554
No 339
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=82.04 E-value=1.8 Score=63.51 Aligned_cols=51 Identities=20% Similarity=0.216 Sum_probs=36.3
Q ss_pred HHHHHc-----CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHH
Q 000129 1350 FTVLYN-----TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1350 ~~~il~-----~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q 1405 (2114)
++.++. .+.++++++|+|+|||..+...+...... +. +++|+.....+...
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~---G~--~v~Fi~~e~~~~~l 1470 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GK--TCAFIDAEHALDPI 1470 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT---TC--CEEEECTTSCCCHH
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc---CC--cEEEEEcccccCHH
Confidence 666655 57899999999999999886555544432 44 88998876544333
No 340
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=81.80 E-value=6.7 Score=46.02 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=20.4
Q ss_pred HcCCCcEEEEecCCCchHHHHHHHHH
Q 000129 1354 YNTDDNVLVAAPTGSGKTICSEFAIL 1379 (2114)
Q Consensus 1354 l~~~~nvli~ApTGSGKTl~~~l~il 1379 (2114)
+..++.++|.||+|||||+.+...+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 34577799999999999988755444
No 341
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=81.66 E-value=3.1 Score=47.70 Aligned_cols=52 Identities=21% Similarity=0.241 Sum_probs=33.2
Q ss_pred cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 509 SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 509 ~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
..+..++++|++|+|||..++..+.+...... .+++|+.-.-. ..++.+++.
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~----------~~v~~~s~E~~-~~~~~~~~~ 79 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG----------EPGVFVTLEER-ARDLRREMA 79 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC----------CCEEEEESSSC-HHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcC----------CCceeecccCC-HHHHHHHHH
Confidence 34677999999999999988776666554431 14777653322 344444443
No 342
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=81.57 E-value=4.9 Score=48.54 Aligned_cols=19 Identities=47% Similarity=0.836 Sum_probs=16.3
Q ss_pred CcEEEEccCCCchHHHHHH
Q 000129 512 DNILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l 530 (2114)
.+++++||+|+|||.++..
T Consensus 56 ~~vll~G~~GtGKT~la~~ 74 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANI 74 (338)
T ss_dssp CCEEEECSTTSSHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHH
Confidence 4799999999999987643
No 343
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=81.43 E-value=0.61 Score=55.96 Aligned_cols=114 Identities=11% Similarity=0.163 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHcCCC--cEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1343 NPIQTQVFTVLYNTDD--NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1343 ~~iQ~q~~~~il~~~~--nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.+...+.+...+..+. ++++.||+|+|||.++ ..+.+.+....... ..+.+.+..
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la-~~l~~~l~~~~~~~--~~~~~~~~~-------------------- 78 (319)
T 2chq_A 22 QDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATA-IALARDLFGENWRD--NFIEMNASD-------------------- 78 (319)
T ss_dssp CHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHH-HHHHHHHHTTCHHH--HCEEEETTS--------------------
T ss_pred CHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHH-HHHHHHhcCCcccC--CeEEEeCcc--------------------
Q ss_pred EEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccc--cceeEEEecccccccCCCCchHHHHHHHHHHHHhhc
Q 000129 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYV--QQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQV 1498 (2114)
Q Consensus 1421 ~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l--~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~ 1498 (2114)
....+.+............+ ....++|+||+|.+... ....+..+....
T Consensus 79 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-------~~~~L~~~le~~ 129 (319)
T 2chq_A 79 ----------------------ERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-------AQAALRRTMEMY 129 (319)
T ss_dssp ----------------------TTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHH-------HHHTTGGGTSSS
T ss_pred ----------------------ccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHH-------HHHHHHHHHHhc
Q ss_pred CCCceEEEEc
Q 000129 1499 ENKIRIVALS 1508 (2114)
Q Consensus 1499 ~~~~riV~lS 1508 (2114)
+...++|+.+
T Consensus 130 ~~~~~~i~~~ 139 (319)
T 2chq_A 130 SKSCRFILSC 139 (319)
T ss_dssp SSSEEEEEEE
T ss_pred CCCCeEEEEe
No 344
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=81.35 E-value=0.81 Score=41.71 Aligned_cols=55 Identities=13% Similarity=0.089 Sum_probs=49.0
Q ss_pred cccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhcC
Q 000129 1935 LLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRF 1992 (2114)
Q Consensus 1935 L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~~ 1992 (2114)
|.+.+||+...+++|...| +.|+.++...+.++...+-++++....++.+.++.+
T Consensus 8 f~~~lgI~e~~a~~L~~~G---f~tve~vA~~~~~eL~~I~G~dE~~a~~l~~~A~~~ 62 (70)
T 1u9l_A 8 FTKYLDIDEDFATVLVEEG---FSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNA 62 (70)
T ss_dssp HHHHHTCCHHHHHHHHHTT---CCCHHHHHHSCHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHcC---cCcHHHHHcCCHHHHhhccCCCHHHHHHHHHHHHHH
Confidence 5677899999999999999 999999999999988888889999999988777643
No 345
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.29 E-value=2.7 Score=51.13 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=19.3
Q ss_pred HHHHHHcCCC--cEEEEecCCCchHHHHH
Q 000129 1349 VFTVLYNTDD--NVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1349 ~~~~il~~~~--nvli~ApTGSGKTl~~~ 1375 (2114)
.+...+..++ ++++.||+|+|||.++.
T Consensus 36 ~L~~~i~~g~~~~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 36 TVRKFVDEGKLPHLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp HHHHHHHTTCCCCEEEECSSSSSHHHHHH
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHH
Confidence 3444444443 38999999999998774
No 346
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=81.28 E-value=4.3 Score=50.47 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=16.3
Q ss_pred CCcEEE--EecCCCchHHHHHH
Q 000129 1357 DDNVLV--AAPTGSGKTICSEF 1376 (2114)
Q Consensus 1357 ~~nvli--~ApTGSGKTl~~~l 1376 (2114)
..+++| .||+|+|||.++..
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~ 71 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKF 71 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHH
Confidence 457888 89999999987743
No 347
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=81.26 E-value=1.9 Score=52.22 Aligned_cols=131 Identities=16% Similarity=0.155 Sum_probs=0.0
Q ss_pred HcCCCcEEEEecCCCchHHHHHHHHHHHhhhccC-----CCceEEEEEcccHHHHHHHHHHHHHHhcCCC-----CcEEE
Q 000129 1354 YNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE-----TGVMRAVYIAPLEALAKERYRDWEIKFGQGL-----GMRVV 1423 (2114)
Q Consensus 1354 l~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~-----~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~-----g~~v~ 1423 (2114)
+..+..++|.||+|||||..+...+...... . ++ +++|+.-...+-.+....+.++++-.. .+.+
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~~~~--~~~gg~~~--~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~- 178 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNVQLP--PEKGGLSG--KAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYY- 178 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSC--GGGTCCSC--EEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEE-
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHHhcc--cccCCCCC--eEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEE-
Q ss_pred EEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccc-cceeEEEecccccccC----------CCCchHHHHHHHHH
Q 000129 1424 ELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYV-QQVSLFIIDELHLIGG----------QGGPVLEVIVSRMR 1492 (2114)
Q Consensus 1424 ~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l-~~v~liIiDEaH~l~~----------~~g~~le~i~srl~ 1492 (2114)
.-..+.+.+..++........- .++++||||.+..+.. .+...+..++..++
T Consensus 179 -----------------~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~ 241 (324)
T 2z43_A 179 -----------------IRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLT 241 (324)
T ss_dssp -----------------EECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHH
T ss_pred -----------------EeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHH
Q ss_pred HHHhhcCCCceEEEEc
Q 000129 1493 YIASQVENKIRIVALS 1508 (2114)
Q Consensus 1493 ~i~~~~~~~~riV~lS 1508 (2114)
.+.... ++-+|+.+
T Consensus 242 ~la~~~--~~~Vi~~n 255 (324)
T 2z43_A 242 RLAEVY--DIAVIITN 255 (324)
T ss_dssp HHHHHH--TCEEEEEE
T ss_pred HHHHHh--CCEEEEEc
No 348
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=81.18 E-value=2.4 Score=51.66 Aligned_cols=39 Identities=13% Similarity=0.104 Sum_probs=0.0
Q ss_pred ccccCC--CCCHHHHHHHHhCCC-chhhhccCChHHhhhhhc
Q 000129 1143 PLRQFN--GIPNEILMKLEKKDF-AWERYYDLSPQELGELIR 1181 (2114)
Q Consensus 1143 ~l~q~~--~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~ 1181 (2114)
|+.+++ |+++..+.+|.++|+ +++++...++.+|.++.+
T Consensus 26 ~~~~l~~~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~ 67 (343)
T 1v5w_A 26 DIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVKG 67 (343)
T ss_dssp ------------------------------------------
T ss_pred cHHHHhhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhC
Confidence 677777 899999999999997 566666667777666544
No 349
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=81.18 E-value=14 Score=44.38 Aligned_cols=30 Identities=13% Similarity=0.082 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHcCCCcEEEEecCCCchHHHHH
Q 000129 1344 PIQTQVFTVLYNTDDNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1344 ~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~ 1375 (2114)
.-+.+.+.. +.. ..++|.||.|+|||....
T Consensus 19 ~~el~~L~~-l~~-~~v~i~G~~G~GKT~L~~ 48 (357)
T 2fna_A 19 EKEIEKLKG-LRA-PITLVLGLRRTGKSSIIK 48 (357)
T ss_dssp HHHHHHHHH-TCS-SEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHHH-hcC-CcEEEECCCCCCHHHHHH
Confidence 334444445 554 579999999999997664
No 350
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.15 E-value=5.5 Score=49.74 Aligned_cols=19 Identities=37% Similarity=0.616 Sum_probs=16.3
Q ss_pred CCCcEEEEecCCCchHHHH
Q 000129 1356 TDDNVLVAAPTGSGKTICS 1374 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~ 1374 (2114)
....+|+.||+|+|||+.+
T Consensus 205 ~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CCCEEEEESCTTTTHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3456999999999999877
No 351
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.07 E-value=3.1 Score=52.05 Aligned_cols=19 Identities=37% Similarity=0.672 Sum_probs=16.4
Q ss_pred CCCcEEEEecCCCchHHHH
Q 000129 1356 TDDNVLVAAPTGSGKTICS 1374 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~ 1374 (2114)
....+|+.||+|+|||+.+
T Consensus 214 ~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCCeEEEECCCCCcHHHHH
Confidence 3467999999999999877
No 352
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.00 E-value=4.2 Score=49.44 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=17.3
Q ss_pred cEEEEecCCCchHHHHHHHHHHHh
Q 000129 1359 NVLVAAPTGSGKTICSEFAILRNH 1382 (2114)
Q Consensus 1359 nvli~ApTGSGKTl~~~l~il~~l 1382 (2114)
++++.||+|+|||..+- .+...+
T Consensus 38 ~~ll~Gp~G~GKTtl~~-~la~~l 60 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCM-ALLESI 60 (354)
T ss_dssp CEEEECSTTSSHHHHHH-THHHHH
T ss_pred eEEEECCCCCCHHHHHH-HHHHHH
Confidence 49999999999998763 344433
No 353
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=80.86 E-value=0.61 Score=46.88 Aligned_cols=56 Identities=14% Similarity=0.095 Sum_probs=51.6
Q ss_pred ccccCC--CCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhcC
Q 000129 1934 MLLQLP--HFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRF 1992 (2114)
Q Consensus 1934 ~L~QLP--~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~~ 1992 (2114)
++-.|| ||++..+++|.++| +.|+.++..+++.+...+-++++....+|.+.++.+
T Consensus 24 ~I~~L~~~GIg~~~i~kL~eAG---~~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA~kl 81 (114)
T 1b22_A 24 PISRLEQCGINANDVKKLEEAG---FHTVEAVAYAPKKELINIKGISEAKADKILAEAAKL 81 (114)
T ss_dssp CHHHHHHTTCSHHHHHHHHTTC---CSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHHHH
T ss_pred cHHHHHhcCCCHHHHHHHHHcC---cCcHHHHHhCCHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 566777 99999999999999 999999999999998888999999999999999875
No 354
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=80.75 E-value=6.3 Score=47.88 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=20.3
Q ss_pred HHHHHHHHH-cCC--CcEEEEccCCCchHHHHH
Q 000129 500 QSRVYKSAL-SSA--DNILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 500 Q~~~i~~~l-~~~--~nvlv~APTGsGKT~~a~ 529 (2114)
..+.+..++ ..+ .+++++||+|+|||..+-
T Consensus 22 ~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 22 LTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCM 54 (354)
T ss_dssp HHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHH
Confidence 334444444 332 359999999999998764
No 355
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=80.74 E-value=1.7 Score=53.43 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=28.5
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHH
Q 000129 510 SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (2114)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ra 561 (2114)
.+..++|.||+|+|||..++..+......+ .+++|+..-.+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g-----------~~vlyi~~E~s 113 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAG-----------GTCAFIDAEHA 113 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTT-----------CCEEEEESSCC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCC-----------CeEEEEECCCC
Confidence 456789999999999988776665554322 25788765443
No 356
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=80.55 E-value=2.4 Score=53.50 Aligned_cols=40 Identities=15% Similarity=0.095 Sum_probs=29.9
Q ss_pred HcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 508 l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
+..++-++|+|++|+|||..++..+.+....+ .+++|++-
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~g-----------~~vl~fSl 233 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDND-----------DVVNLHSL 233 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHHTT-----------CEEEEECS
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHcC-----------CEEEEEEC
Confidence 45567799999999999998877776665432 26888764
No 357
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=80.44 E-value=1 Score=47.42 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=19.3
Q ss_pred HHcCCCcEEEEccCCCchHHHHH
Q 000129 507 ALSSADNILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 507 ~l~~~~nvlv~APTGsGKT~~a~ 529 (2114)
+...+.++++.||+|+|||.++-
T Consensus 20 ~a~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 20 LSETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp HTTCCSCEEEESSTTSSHHHHHH
T ss_pred HhCCCCCEEEECCCCCCHHHHHH
Confidence 34567789999999999998874
No 358
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=80.44 E-value=2.1 Score=54.19 Aligned_cols=18 Identities=33% Similarity=0.650 Sum_probs=15.9
Q ss_pred CcEEEEecCCCchHHHHH
Q 000129 1358 DNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~ 1375 (2114)
.++++.||+|+|||.++.
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 479999999999998874
No 359
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=80.35 E-value=2.1 Score=51.57 Aligned_cols=41 Identities=15% Similarity=0.230 Sum_probs=36.3
Q ss_pred ccccCCCCCHHHHHHHHhCCC-chhhhccCChHHhhhhhcCc
Q 000129 1143 PLRQFNGIPNEILMKLEKKDF-AWERYYDLSPQELGELIRFP 1183 (2114)
Q Consensus 1143 ~l~q~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~ 1183 (2114)
+|..++|+++..+++|.++|+ +++++...++.+|.++.+.+
T Consensus 4 ~~~~l~gi~~~~~~kL~~~gi~t~~~~~~~~~~~L~~~~gis 45 (322)
T 2i1q_A 4 NLTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGIS 45 (322)
T ss_dssp -CTTSTTCCHHHHHHHHHHTCCSHHHHHTCCHHHHHTSTTCC
T ss_pred cHhhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhCcC
Confidence 688899999999999999998 78999999999999887754
No 360
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=80.21 E-value=3.8 Score=50.22 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=17.4
Q ss_pred cEEEEecCCCchHHHHHHHHHHHh
Q 000129 1359 NVLVAAPTGSGKTICSEFAILRNH 1382 (2114)
Q Consensus 1359 nvli~ApTGSGKTl~~~l~il~~l 1382 (2114)
.+++.||+|+|||.++. .+.+.+
T Consensus 40 ~~ll~G~~G~GKT~la~-~la~~l 62 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIAR-LLAKGL 62 (373)
T ss_dssp EEEEESCTTSSHHHHHH-HHHHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHHHh
Confidence 48999999999998874 334444
No 361
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=80.20 E-value=2.9 Score=46.91 Aligned_cols=40 Identities=13% Similarity=0.077 Sum_probs=26.8
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHH
Q 000129 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ra 561 (2114)
+.-.++++|-|||||...+-.+.+.... +.+++++.|.+.
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~-----------g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYA-----------KQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT-----------TCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc-----------CCceEEEEeccC
Confidence 3446889999999998766555444332 236899999764
No 362
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.04 E-value=3.3 Score=51.39 Aligned_cols=18 Identities=28% Similarity=0.551 Sum_probs=16.0
Q ss_pred CCcEEEEecCCCchHHHH
Q 000129 1357 DDNVLVAAPTGSGKTICS 1374 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~ 1374 (2114)
...+|+.||+|+|||+.+
T Consensus 216 prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CSEEEEESSTTTTHHHHH
T ss_pred CCCCceECCCCchHHHHH
Confidence 466999999999999876
No 363
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=79.94 E-value=1.9 Score=39.30 Aligned_cols=54 Identities=13% Similarity=0.250 Sum_probs=43.7
Q ss_pred CccccCCCCCHHHHHHHHhCCC-chhhhccCChHHhhhhhcCch-hHHHHHHHHhc
Q 000129 1142 TPLRQFNGIPNEILMKLEKKDF-AWERYYDLSPQELGELIRFPK-MGRTLHKFVHQ 1195 (2114)
Q Consensus 1142 ~~l~q~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~ 1195 (2114)
-+|.+++|+++..+.+|..+|+ +++++...++++|..+.+++. .+..|...++.
T Consensus 7 ~~l~~L~Gi~~~~~~kL~e~Gi~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr~ 62 (70)
T 1wcn_A 7 DDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARN 62 (70)
T ss_dssp HHHHSSTTCCHHHHHHHHTTTCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred hHHHHcCCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHH
Confidence 3588999999999999999998 899999999999999888643 34555555543
No 364
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=79.87 E-value=1.1 Score=47.19 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=18.5
Q ss_pred HHcCCCcEEEEccCCCchHHHH
Q 000129 507 ALSSADNILLCAPTGAGKTNVA 528 (2114)
Q Consensus 507 ~l~~~~nvlv~APTGsGKT~~a 528 (2114)
+...+.+++++||+|+|||.++
T Consensus 23 ~~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 23 AAKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HHTCSSCEEEEEETTCCHHHHH
T ss_pred HhCCCCcEEEECCCCccHHHHH
Confidence 3456778999999999999875
No 365
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=79.79 E-value=1.2 Score=46.85 Aligned_cols=22 Identities=14% Similarity=0.146 Sum_probs=18.6
Q ss_pred HHcCCCcEEEEecCCCchHHHH
Q 000129 1353 LYNTDDNVLVAAPTGSGKTICS 1374 (2114)
Q Consensus 1353 il~~~~nvli~ApTGSGKTl~~ 1374 (2114)
+..++.++++.||+|+|||.++
T Consensus 23 ~~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 23 AAKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HHTCSSCEEEEEETTCCHHHHH
T ss_pred HhCCCCcEEEECCCCccHHHHH
Confidence 3456788999999999999876
No 366
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=79.40 E-value=1.1 Score=47.04 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=19.5
Q ss_pred HHcCCCcEEEEecCCCchHHHHH
Q 000129 1353 LYNTDDNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1353 il~~~~nvli~ApTGSGKTl~~~ 1375 (2114)
+..++.++++.||+|+|||.++.
T Consensus 20 ~a~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 20 LSETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp HTTCCSCEEEESSTTSSHHHHHH
T ss_pred HhCCCCCEEEECCCCCCHHHHHH
Confidence 34577889999999999998874
No 367
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.18 E-value=5.3 Score=49.93 Aligned_cols=18 Identities=33% Similarity=0.643 Sum_probs=16.1
Q ss_pred CCcEEEEecCCCchHHHH
Q 000129 1357 DDNVLVAAPTGSGKTICS 1374 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~ 1374 (2114)
...+|+.||+|+|||+.+
T Consensus 215 prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CCeeEEECcCCCCHHHHH
Confidence 567999999999999876
No 368
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=78.92 E-value=5.3 Score=49.58 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=16.3
Q ss_pred CCcEEE--EccCCCchHHHHHH
Q 000129 511 ADNILL--CAPTGAGKTNVAVL 530 (2114)
Q Consensus 511 ~~nvlv--~APTGsGKT~~a~l 530 (2114)
..+++| +||.|+|||..+..
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~ 71 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKF 71 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHH
Confidence 346888 99999999987654
No 369
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=78.28 E-value=3.2 Score=46.03 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=19.9
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHhhh
Q 000129 1358 DNVLVAAPTGSGKTICSEFAILRNHQK 1384 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~il~~l~~ 1384 (2114)
.++++.||+|+|||..+. ++...+..
T Consensus 55 ~~~~l~G~~GtGKT~la~-~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA-AIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHH-HHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHH
Confidence 689999999999998763 44554443
No 370
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=78.25 E-value=3.7 Score=45.41 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=31.2
Q ss_pred CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccH
Q 000129 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLE 1400 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr 1400 (2114)
...+++|..++|.|||.++.=..++.+.. +. +++++.-.+
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~---G~--rV~~vQF~K 66 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGH---GK--NVGVVQFIK 66 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHT---TC--CEEEEESSC
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHC---CC--eEEEEEeeC
Confidence 45689999999999999997777777766 33 788875444
No 371
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=77.85 E-value=2.7 Score=53.21 Aligned_cols=20 Identities=25% Similarity=0.489 Sum_probs=16.9
Q ss_pred CCCcEEEEecCCCchHHHHH
Q 000129 1356 TDDNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~ 1375 (2114)
...++++.||+|+|||.++.
T Consensus 166 ~~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 34679999999999998773
No 372
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=77.53 E-value=6.6 Score=48.69 Aligned_cols=132 Identities=14% Similarity=0.111 Sum_probs=0.0
Q ss_pred HcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc----CCCceEEEEEcccHHHHHHHHHHHHHHhcCCC-----CcEEEE
Q 000129 1354 YNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS----ETGVMRAVYIAPLEALAKERYRDWEIKFGQGL-----GMRVVE 1424 (2114)
Q Consensus 1354 l~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~----~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~-----g~~v~~ 1424 (2114)
+..++.+.|.||+|||||..+...++..+.. . ..+ +++|+.-...+-......+.++++-.. .+.+
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~~~~~p-~~~Gg~~~--~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~-- 249 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAVTCQIP-LDIGGGEG--KCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAY-- 249 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSC-GGGTCCSS--EEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEE--
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHHHhccC-cccCCCCC--cEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEE--
Q ss_pred EcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCc----------hHHHHHHHHHHH
Q 000129 1425 LTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP----------VLEVIVSRMRYI 1494 (2114)
Q Consensus 1425 l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~----------~le~i~srl~~i 1494 (2114)
.-..+.+....++.+......-..+++||+||.-.+....-. .+..++..++.+
T Consensus 250 ----------------~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~l 313 (400)
T 3lda_A 250 ----------------ARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRL 313 (400)
T ss_dssp ----------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHH
T ss_pred ----------------eccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHH
Q ss_pred HhhcCCCceEEEEc
Q 000129 1495 ASQVENKIRIVALS 1508 (2114)
Q Consensus 1495 ~~~~~~~~riV~lS 1508 (2114)
.... ++-+|+.+
T Consensus 314 ake~--gitVIlv~ 325 (400)
T 3lda_A 314 ADQF--GVAVVVTN 325 (400)
T ss_dssp HHHH--CCEEEEEE
T ss_pred HHHc--CCEEEEEE
No 373
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=77.23 E-value=11 Score=44.88 Aligned_cols=21 Identities=38% Similarity=0.476 Sum_probs=16.7
Q ss_pred CCcEEEEccCCCchHHHHHHH
Q 000129 511 ADNILLCAPTGAGKTNVAVLT 531 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~ 531 (2114)
+..+++++|+|+|||+.+...
T Consensus 105 g~vi~lvG~~GsGKTTl~~~L 125 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKL 125 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 456889999999999876443
No 374
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=77.12 E-value=5 Score=50.94 Aligned_cols=19 Identities=32% Similarity=0.712 Sum_probs=16.2
Q ss_pred CCcEEEEecCCCchHHHHH
Q 000129 1357 DDNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~ 1375 (2114)
...+++.||+|+|||+++-
T Consensus 49 p~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp CSEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4569999999999998773
No 375
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=77.06 E-value=6.5 Score=50.52 Aligned_cols=142 Identities=8% Similarity=0.083 Sum_probs=72.0
Q ss_pred CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEE----EEcCCccc
Q 000129 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVV----ELTGETAM 1431 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~----~l~G~~~~ 1431 (2114)
.++-++|+|++|+|||..++..+.+.... .+. +++|+.-- .-..|+..++..... |+... ...|....
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~--~g~--~vl~~s~E-~s~~~l~~r~~~~~~---~~~~~~~~~~~~g~l~~ 312 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA--MGK--KVGLAMLE-ESVEETAEDLIGLHN---RVRLRQSDSLKREIIEN 312 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT--SCC--CEEEEESS-SCHHHHHHHHHHHHT---TSCCTTCHHHHHHHHHT
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh--cCC--cEEEEecc-CCHHHHHHHHHHHHc---CCChhhccccccCCCCH
Confidence 46779999999999998876655554432 123 67777543 223455554432221 11110 00111110
Q ss_pred c-h-----hhccCCcEEEE-C-----hhhHHHHHhhhcccccccceeEEEecccccccCCC---C--chHHHHHHHHHHH
Q 000129 1432 D-L-----KLLEKGQIIIS-T-----PEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG---G--PVLEVIVSRMRYI 1494 (2114)
Q Consensus 1432 ~-~-----~~l~~~~IIV~-T-----Pe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~---g--~~le~i~srl~~i 1494 (2114)
+ . ..+...++.+. + ++.+...+++... -..+++||||=++.+.... + ..+..++..++.+
T Consensus 313 ~~~~~~~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~~---~~~~~lvVID~l~~l~~~~~~~~~~~~~~~~~~~Lk~l 389 (503)
T 1q57_A 313 GKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRS---GLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGF 389 (503)
T ss_dssp SHHHHHHHHHHTTTCEEEECCC---CHHHHHHHHHHHHH---TTCCSEEEEECTTCCCSCCSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHH---hcCCCEEEEccchhcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 0 0 01123455543 3 3333333333221 1358999999998775321 1 1233456666666
Q ss_pred HhhcCCCceEEEEccc
Q 000129 1495 ASQVENKIRIVALSTS 1510 (2114)
Q Consensus 1495 ~~~~~~~~riV~lSAT 1510 (2114)
...+ ++.+|++|-.
T Consensus 390 ak~~--~i~vi~~~q~ 403 (503)
T 1q57_A 390 AKST--GVVLVVICHL 403 (503)
T ss_dssp HHHH--TCEEEEEEEC
T ss_pred HHHH--CCeEEEEEcC
Confidence 5543 5667776654
No 376
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=76.79 E-value=3.7 Score=46.81 Aligned_cols=25 Identities=12% Similarity=0.118 Sum_probs=19.7
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHH
Q 000129 510 SADNILLCAPTGAGKTNVAVLTILQ 534 (2114)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l~il~ 534 (2114)
.++.+++.||+|+|||..+...+..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4577899999999999987655443
No 377
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=76.66 E-value=5.7 Score=47.40 Aligned_cols=18 Identities=17% Similarity=-0.060 Sum_probs=15.3
Q ss_pred cEEEEecCCCchHHHHHH
Q 000129 1359 NVLVAAPTGSGKTICSEF 1376 (2114)
Q Consensus 1359 nvli~ApTGSGKTl~~~l 1376 (2114)
.+++.||.|+|||.++..
T Consensus 20 ~~Lf~Gp~G~GKtt~a~~ 37 (305)
T 2gno_A 20 SILINGEDLSYPREVSLE 37 (305)
T ss_dssp EEEEECSSSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 689999999999987643
No 378
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=76.52 E-value=1.4 Score=54.00 Aligned_cols=39 Identities=13% Similarity=0.211 Sum_probs=28.4
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 510 SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
.+..++|.||+|+|||..++..+......+ .+++|+..-
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g-----------~~vlyid~E 100 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREG-----------KTCAFIDAE 100 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTT-----------CCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC-----------CeEEEEeCC
Confidence 456789999999999998876666554332 257888653
No 379
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=76.48 E-value=2.6 Score=49.38 Aligned_cols=76 Identities=11% Similarity=0.065 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHCCCceecCCCccccCcccchhhhcccCHhHHHHHHhhcCCCCChhhHHHHHhcCccccCCCCCcchH
Q 000129 1761 SELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEE 1840 (2114)
Q Consensus 1761 selve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~i~~~T~~~f~~sl~~~~~~~~iL~ils~a~Ef~~i~vR~~E~ 1840 (2114)
.+.+..++..|...|+++- +-..|++|+.++.++++|...+++..+....+ ...++.|.|.-++ .++.+|+.++
T Consensus 17 ~~~l~~A~~~L~~LgAld~----~g~lT~lG~~ma~lPl~P~lakmLl~a~~~~c-~~~~l~iaA~Ls~-~~~f~~p~~~ 90 (270)
T 3i4u_A 17 METLITAMEQLYTLGALDD----EGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGC-SEEMLTIVSMLSV-QNVFYRPKDK 90 (270)
T ss_dssp HHHHHHHHHHHHHHTSBCT----TSCBCHHHHHHTTSCSCHHHHHHHHHHHHTTC-HHHHHHHHHHHTS-SCCBCCCGGG
T ss_pred HHHHHHHHHHHHHcCCcCC----CCCccHHHHHHHhCCCCHHHHHHHHHhhhcCC-HHHHHHHHHHHCC-CccccCCchh
Confidence 4778999999999999942 23689999999999999999999987654433 4555555554332 4566666554
Q ss_pred HH
Q 000129 1841 EV 1842 (2114)
Q Consensus 1841 ~~ 1842 (2114)
..
T Consensus 91 ~~ 92 (270)
T 3i4u_A 91 QA 92 (270)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 380
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=76.36 E-value=1.5 Score=40.99 Aligned_cols=55 Identities=11% Similarity=-0.062 Sum_probs=45.9
Q ss_pred CCccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHh
Q 000129 1932 DSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCN 1990 (2114)
Q Consensus 1932 ~s~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~ 1990 (2114)
.+.|.++||||+..+++|.+. +.++.++.+++.++...+-++++.....|..+++
T Consensus 23 ~~~L~~I~gIG~~~A~~Ll~~----fgsl~~l~~a~~eeL~~i~GIG~~~a~~I~~~~~ 77 (78)
T 1kft_A 23 TSSLETIEGVGPKRRQMLLKY----MGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 77 (78)
T ss_dssp CCGGGGCTTCSSSHHHHHHHH----HSCHHHHHHCCHHHHTTSSSTTSHHHHHHHHHHT
T ss_pred HHHHhcCCCCCHHHHHHHHHH----cCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHh
Confidence 456889999999999998764 4589999999888877777799998888888765
No 381
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=76.11 E-value=7.4 Score=49.70 Aligned_cols=46 Identities=22% Similarity=0.331 Sum_probs=27.1
Q ss_pred ccEEEEecccccccCCc-------hhHHHHHHHHHHHHhhccccccEEEEccc
Q 000129 624 VKLLIIDEIHLLHDNRG-------PVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2114)
Q Consensus 624 v~liIiDEaH~l~d~rg-------~~le~iv~rl~~~~~~~~~~~riv~lSAT 669 (2114)
..+++|||+|.+...++ ...+..+..++..+........++.+.||
T Consensus 124 p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAat 176 (499)
T 2dhr_A 124 PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAAT 176 (499)
T ss_dssp SCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECC
T ss_pred CCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEec
Confidence 46899999998865332 23344555555544433334445666666
No 382
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=76.11 E-value=15 Score=43.01 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=20.8
Q ss_pred HcCCCcEEEEccCCCchHHHHHHHHH
Q 000129 508 LSSADNILLCAPTGAGKTNVAVLTIL 533 (2114)
Q Consensus 508 l~~~~nvlv~APTGsGKT~~a~l~il 533 (2114)
+..++.++|.||+|||||..+...+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 45567799999999999998766554
No 383
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=76.09 E-value=3.7 Score=45.55 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=18.5
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHH
Q 000129 512 DNILLCAPTGAGKTNVAVLTILQQL 536 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l 536 (2114)
.+++++||+|+|||..+. ++...+
T Consensus 55 ~~~~l~G~~GtGKT~la~-~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA-AIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHH-HHHHHH
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHH
Confidence 689999999999998764 344444
No 384
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=75.99 E-value=6.3 Score=53.71 Aligned_cols=47 Identities=23% Similarity=0.403 Sum_probs=29.4
Q ss_pred ccEEEEecccccccCC----chhHHHHHHHHHHHHhhccccccEEEEcccc
Q 000129 624 VKLLIIDEIHLLHDNR----GPVLESIVARTVRQIETTKEHIRLVGLSATL 670 (2114)
Q Consensus 624 v~liIiDEaH~l~d~r----g~~le~iv~rl~~~~~~~~~~~riv~lSATl 670 (2114)
..++++||+|.+...+ +.....++..++..+........++.+.||-
T Consensus 298 p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn 348 (806)
T 1ypw_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATN 348 (806)
T ss_dssp SEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECS
T ss_pred CcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccC
Confidence 4689999999887532 3444455566655555444445566666663
No 385
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=75.78 E-value=2.3 Score=48.82 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=19.2
Q ss_pred cCCCcEEEEecCCCchHHHHHHHH
Q 000129 1355 NTDDNVLVAAPTGSGKTICSEFAI 1378 (2114)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~~~l~i 1378 (2114)
..++.+.|.||+|||||+.+-..+
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 457789999999999998765443
No 386
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.16 E-value=4.6 Score=50.55 Aligned_cols=19 Identities=37% Similarity=0.894 Sum_probs=16.7
Q ss_pred CCCcEEEEecCCCchHHHH
Q 000129 1356 TDDNVLVAAPTGSGKTICS 1374 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~ 1374 (2114)
....+|+.||+|+|||+.+
T Consensus 242 pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CCSEEEECSCTTSSHHHHH
T ss_pred CCCceEeeCCCCCcHHHHH
Confidence 4567999999999999876
No 387
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=74.80 E-value=1.8 Score=52.95 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=28.0
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 510 SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
.++.++|.||+|+|||..++..+......+ .+++|+.--
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g-----------~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAG-----------GIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTT-----------CCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC-----------CeEEEEECC
Confidence 456789999999999998877665554332 257777643
No 388
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=74.53 E-value=2.2 Score=54.75 Aligned_cols=36 Identities=17% Similarity=0.029 Sum_probs=29.1
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHH
Q 000129 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICS 1374 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~ 1374 (2114)
+..+++.+.+-+......+.+++|+||||||||+..
T Consensus 242 ~G~~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL 277 (511)
T 2oap_1 242 KGTVPSGVLAYLWLAIEHKFSAIVVGETASGKTTTL 277 (511)
T ss_dssp TTSSCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHH
T ss_pred cCCCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 445777777777777777888999999999999764
No 389
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=74.45 E-value=2 Score=55.20 Aligned_cols=35 Identities=14% Similarity=0.060 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHH
Q 000129 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVA 528 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a 528 (2114)
..+++.+.+-+...+..+.+++++||||||||+..
T Consensus 243 G~~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL 277 (511)
T 2oap_1 243 GTVPSGVLAYLWLAIEHKFSAIVVGETASGKTTTL 277 (511)
T ss_dssp TSSCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 35677777777777788889999999999999754
No 390
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=74.13 E-value=4.6 Score=58.54 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=31.9
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHH
Q 000129 510 SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (2114)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raL 562 (2114)
.+.++++++|+|+|||..++..+...+..+ .+++|+.-....
T Consensus 33 ~G~i~lI~G~pGsGKT~LAlqla~~~~~~G-----------~~vlYI~te~~~ 74 (1706)
T 3cmw_A 33 MGRIVEIYGPESSGKTTLTLQVIAAAQREG-----------KTCAFIDAEHAL 74 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTT-----------CCEEEECTTSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhCC-----------CceEEEEecCcc
Confidence 356899999999999999888777766543 268888765443
No 391
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=74.00 E-value=5.4 Score=53.74 Aligned_cols=46 Identities=22% Similarity=0.403 Sum_probs=31.4
Q ss_pred ccEEEEecccccccC----CchhHHHHHHHHHHHHhhccccccEEEEccc
Q 000129 624 VKLLIIDEIHLLHDN----RGPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2114)
Q Consensus 624 v~liIiDEaH~l~d~----rg~~le~iv~rl~~~~~~~~~~~riv~lSAT 669 (2114)
-.+|+|||+|.+... .+..-..+++.++..+.......+++.+-||
T Consensus 298 PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaT 347 (806)
T 3cf2_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAAT 347 (806)
T ss_dssp SEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEEC
T ss_pred CeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEec
Confidence 368999999998642 3444556777776666655555667777777
No 392
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=73.98 E-value=13 Score=44.07 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=16.4
Q ss_pred CCcEEEEecCCCchHHHHHH
Q 000129 1357 DDNVLVAAPTGSGKTICSEF 1376 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l 1376 (2114)
+..+++.||+|+|||+.+..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~ 124 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAK 124 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 55788999999999987643
No 393
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=73.39 E-value=5 Score=54.10 Aligned_cols=46 Identities=22% Similarity=0.421 Sum_probs=26.5
Q ss_pred eeEEEecccccccCCC----CchHHHHHHHHHHHHhhcCCCceEEEEccc
Q 000129 1465 VSLFIIDELHLIGGQG----GPVLEVIVSRMRYIASQVENKIRIVALSTS 1510 (2114)
Q Consensus 1465 v~liIiDEaH~l~~~~----g~~le~i~srl~~i~~~~~~~~riV~lSAT 1510 (2114)
-.+|+|||+|.+...+ +..-..+++.+......+....+++.+.||
T Consensus 298 PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaT 347 (806)
T 3cf2_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAAT 347 (806)
T ss_dssp SEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEEC
T ss_pred CeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEec
Confidence 4689999999887532 333334444444333333444456666666
No 394
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=71.86 E-value=3.3 Score=49.88 Aligned_cols=55 Identities=13% Similarity=0.073 Sum_probs=48.9
Q ss_pred ccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhc
Q 000129 1934 MLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNR 1991 (2114)
Q Consensus 1934 ~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~ 1991 (2114)
+|..|||+++..+++|.++| |.|+.+++....++..++.+++++...++...+..
T Consensus 4 ~~~~l~gi~~~~~~kL~~~g---i~t~~~~~~~~~~~L~~~~gis~~~a~~~i~~a~~ 58 (322)
T 2i1q_A 4 NLTDLPGVGPSTAEKLVEAG---YIDFMKIATATVGELTDIEGISEKAAAKMIMGARD 58 (322)
T ss_dssp -CTTSTTCCHHHHHHHHHHT---CCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred cHhhcCCCCHHHHHHHHHcC---CCcHHHHHhCCHHHHHHhhCcCHHHHHHHHHHHHH
Confidence 68899999999999999999 99999999999999888888999988887776654
No 395
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=71.43 E-value=4.2 Score=49.56 Aligned_cols=43 Identities=16% Similarity=0.224 Sum_probs=28.8
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHH
Q 000129 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~ 564 (2114)
+..++|.+|+|+|||..+...+......+ .+++|+..-.++-.
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~g-----------g~VlyId~E~s~~~ 103 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMG-----------GVAAFIDAEHALDP 103 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTT-----------CCEEEEESSCCCCH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcC-----------CeEEEEecccccch
Confidence 45788999999999987765554433221 26888876554433
No 396
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=71.11 E-value=3.9 Score=51.04 Aligned_cols=40 Identities=30% Similarity=0.435 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHc-CCCcEEEEecCCCchHHHHHHHHHHHh
Q 000129 1342 FNPIQTQVFTVLYN-TDDNVLVAAPTGSGKTICSEFAILRNH 1382 (2114)
Q Consensus 1342 ~~~iQ~q~~~~il~-~~~nvli~ApTGSGKTl~~~l~il~~l 1382 (2114)
+.+-+.+++..++. .+..++|.||||||||+.. -+++..+
T Consensus 151 ~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL-~allg~l 191 (418)
T 1p9r_A 151 MTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTL-YAGLQEL 191 (418)
T ss_dssp CCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHH-HHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHhhc
Confidence 34556667776654 3456899999999999864 3444444
No 397
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=71.10 E-value=4.3 Score=41.47 Aligned_cols=49 Identities=18% Similarity=0.201 Sum_probs=38.9
Q ss_pred CccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhc
Q 000129 1933 SMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNR 1991 (2114)
Q Consensus 1933 s~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~ 1991 (2114)
..|.|||||++..++++.++| ++++++||.+. -++++++.+.+.+...+
T Consensus 63 ~eL~~LpGiGp~~A~~II~~G--pF~svedL~~V--------~GIg~k~~e~l~~~~~~ 111 (134)
T 1s5l_U 63 AAFIQYRGLYPTLAKLIVKNA--PYESVEDVLNI--------PGLTERQKQILRENLEH 111 (134)
T ss_dssp GGGGGSTTCTHHHHHHHHHTC--CCSSGGGGGGC--------TTCCHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCHHHHHHHHHcC--CCCCHHHHHhC--------CCCCHHHHHHHHHhhcc
Confidence 358999999999999988887 68999999864 34788777777665553
No 398
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=70.90 E-value=10 Score=55.75 Aligned_cols=42 Identities=24% Similarity=0.256 Sum_probs=30.3
Q ss_pred CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHH
Q 000129 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEAL 1402 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~L 1402 (2114)
.++-++|.||+|+|||..++..+.+.... ++ +++|+.--..+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~---G~--~vlyis~E~s~ 423 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---GK--TCAFIDAEHAL 423 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT---TC--CEEEECTTSCC
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhc---CC--eEEEEEcCCCH
Confidence 56779999999999999886666554433 34 78888655433
No 399
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=70.73 E-value=2.8 Score=47.67 Aligned_cols=39 Identities=18% Similarity=0.097 Sum_probs=29.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccH
Q 000129 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMK 560 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~r 560 (2114)
+.-++++||+|+|||+.++-.+.+....+ .+++|+.|..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g-----------~kVli~~~~~ 50 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYAD-----------VKYLVFKPKI 50 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTT-----------CCEEEEEECC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcC-----------CEEEEEEecc
Confidence 44578899999999998876666655432 3688888876
No 400
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=70.66 E-value=4.4 Score=38.73 Aligned_cols=54 Identities=6% Similarity=0.006 Sum_probs=46.0
Q ss_pred ccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhc
Q 000129 1934 MLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNR 1991 (2114)
Q Consensus 1934 ~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~ 1991 (2114)
.|..+||+|+..++++.+. +.++.++.+++.++...+-++++.....|..+++.
T Consensus 20 ~L~~IpgIG~~~A~~Ll~~----fgsl~~l~~a~~~eL~~i~GIG~~~a~~I~~~l~~ 73 (89)
T 1z00_A 20 CLTTVKSVNKTDSQTLLTT----FGSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 73 (89)
T ss_dssp HHTTSSSCCHHHHHHHHHH----TCBHHHHHHCCHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred HHHcCCCCCHHHHHHHHHH----CCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 4778999999999997764 45899999999988888888999999999998864
No 401
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=70.65 E-value=2.8 Score=49.95 Aligned_cols=44 Identities=9% Similarity=0.151 Sum_probs=32.7
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHH
Q 000129 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE 565 (2114)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q 565 (2114)
.++|.+|.|+|||..++..+......+. +.+++|+..--++...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~---------g~~vlyId~E~s~~~~ 73 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYP---------DAVCLFYDSEFGITPA 73 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCT---------TCEEEEEESSCCCCHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCC---------CceEEEEeccchhhHH
Confidence 5889999999999998887776664421 2389999877666443
No 402
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=70.42 E-value=15 Score=43.66 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 000129 511 ADNILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l 530 (2114)
...+++++|+|+|||+.+..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~ 123 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGK 123 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHH
Confidence 34578999999999976543
No 403
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=69.52 E-value=5.7 Score=57.63 Aligned_cols=50 Identities=20% Similarity=0.226 Sum_probs=35.8
Q ss_pred HHHHHHHc-----CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHH
Q 000129 1348 QVFTVLYN-----TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEAL 1402 (2114)
Q Consensus 1348 q~~~~il~-----~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~L 1402 (2114)
..++.++. .+..++|+||+|+|||..++..+.+.... ++ +++|+.---.+
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~---G~--~vlyis~E~s~ 423 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GK--TCAFIDAEHAL 423 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT---TC--CEEEECTTSCC
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh---CC--CeEEEEccCch
Confidence 34666665 56779999999999999887766665543 44 78888655443
No 404
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=69.20 E-value=4.5 Score=38.91 Aligned_cols=53 Identities=6% Similarity=0.004 Sum_probs=45.1
Q ss_pred ccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHh
Q 000129 1934 MLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCN 1990 (2114)
Q Consensus 1934 ~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~ 1990 (2114)
.|..+||+|+..+++|.+. +.++.++++++.++...+-++++.....|..+++
T Consensus 33 ~L~~IpgIG~~~A~~Ll~~----fgs~~~l~~as~~eL~~i~GIG~~~a~~I~~~l~ 85 (91)
T 2a1j_B 33 CLTTVKSVNKTDSQTLLTT----FGSLEQLIAASREDLALCPGLGPQKARRLFDVLH 85 (91)
T ss_dssp HHTTSTTCCHHHHHHHHHH----HSSHHHHHSCCHHHHHTSSSCCSHHHHHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHH----CCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHh
Confidence 4778999999999998764 4589999999988888877899999999988875
No 405
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=68.01 E-value=7.8 Score=52.79 Aligned_cols=21 Identities=29% Similarity=0.616 Sum_probs=17.5
Q ss_pred cCCCcEEEEecCCCchHHHHH
Q 000129 1355 NTDDNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~~~ 1375 (2114)
..+.++++.||+|||||+++-
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLar 256 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIAR 256 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHH
Confidence 346689999999999998763
No 406
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=67.97 E-value=10 Score=52.25 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=17.3
Q ss_pred CCcEEEEccCCCchHHHHHHH
Q 000129 511 ADNILLCAPTGAGKTNVAVLT 531 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~ 531 (2114)
..|++++||+|+|||.++...
T Consensus 191 ~~~vlL~G~pG~GKT~la~~l 211 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGL 211 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHH
Confidence 457999999999999876543
No 407
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=67.44 E-value=7.2 Score=46.64 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=20.3
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHhh
Q 000129 1357 DDNVLVAAPTGSGKTICSEFAILRNHQ 1383 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l~il~~l~ 1383 (2114)
..++++.||||+|||..+. ++.+.+.
T Consensus 152 ~~~lll~G~~GtGKT~La~-aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA-AMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH-HHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH-HHHHHHH
Confidence 5789999999999998774 4555554
No 408
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=67.29 E-value=4.6 Score=44.38 Aligned_cols=38 Identities=16% Similarity=0.086 Sum_probs=27.2
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccH
Q 000129 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMK 560 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~r 560 (2114)
.-.+++||.|+|||..++-.+.+....+ .+++++.|..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g-----------~~v~~~~~~~ 41 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGK-----------KKVAVFKPKI 41 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT-----------CEEEEEEEC-
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC-----------CeEEEEeecc
Confidence 3478999999999998765555544332 3788998985
No 409
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=66.70 E-value=5.2 Score=36.64 Aligned_cols=54 Identities=19% Similarity=0.223 Sum_probs=45.1
Q ss_pred ccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhc
Q 000129 1934 MLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNR 1991 (2114)
Q Consensus 1934 ~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~ 1991 (2114)
.|.++||+|...+++|.+. +.++.++...+.++...+-++++.....|..+++.
T Consensus 15 ~L~~i~giG~~~a~~Ll~~----fgs~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~~ 68 (75)
T 1x2i_A 15 IVEGLPHVSATLARRLLKH----FGSVERVFTASVAELMKVEGIGEKIAKEIRRVITA 68 (75)
T ss_dssp HHTTSTTCCHHHHHHHHHH----HCSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHHHS
T ss_pred HHcCCCCCCHHHHHHHHHH----cCCHHHHHhCCHHHHhcCCCCCHHHHHHHHHHHhC
Confidence 4789999999999998763 56899999988887777777999999999888764
No 410
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=66.57 E-value=11 Score=34.52 Aligned_cols=56 Identities=11% Similarity=0.133 Sum_probs=46.2
Q ss_pred CccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhcC
Q 000129 1933 SMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRF 1992 (2114)
Q Consensus 1933 s~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~~ 1992 (2114)
.|+-+| .++......|.++| |.|+.||+....++..++-+++.+-+++|.+.+..+
T Consensus 9 ~~Ie~L-~LS~Ra~NcLkrag---I~Tv~dL~~~s~~dLlki~n~G~kSl~EI~~~L~~~ 64 (73)
T 1z3e_B 9 MTIEEL-DLSVRSYNCLKRAG---INTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEEL 64 (73)
T ss_dssp CBGGGS-CCBHHHHHHHHHTT---CCBHHHHHTSCHHHHHTSTTCCHHHHHHHHHHHHHT
T ss_pred CcHHHh-CCCHHHHHHHHHcC---CCcHHHHHcCCHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 345555 46666666678999 999999999999988888889999999999998875
No 411
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=66.35 E-value=7.5 Score=46.49 Aligned_cols=26 Identities=19% Similarity=0.395 Sum_probs=19.6
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHH
Q 000129 511 ADNILLCAPTGAGKTNVAVLTILQQLA 537 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~ 537 (2114)
..+++++||||+|||..+.. +...+.
T Consensus 152 ~~~lll~G~~GtGKT~La~a-ia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAA-MAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH-HHHHHH
Confidence 47899999999999987653 334443
No 412
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=66.33 E-value=7.7 Score=47.25 Aligned_cols=56 Identities=18% Similarity=0.184 Sum_probs=49.4
Q ss_pred CccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhc
Q 000129 1933 SMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNR 1991 (2114)
Q Consensus 1933 s~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~ 1991 (2114)
.+|-+|||+++..+++|.++| +.|+.+++.+++.+..++.++++....++.+.+..
T Consensus 35 ~~l~~l~Gi~~~~~~kL~~ag---~~t~~~~~~~~~~~L~~~~~~s~~~~~~~l~~~~~ 90 (349)
T 1pzn_A 35 RSIEDLPGVGPATAEKLREAG---YDTLEAIAVASPIELKEVAGISEGTALKIIQAARK 90 (349)
T ss_dssp CCSSCCTTCCHHHHHHHHTTT---CCSHHHHHTCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccHHHcCCCCHHHHHHHHHcC---CCcHHHHHhCCHHHHHhhcCCCHHHHHHHHHHHhh
Confidence 368899999999999999999 99999999999999999999998887777666543
No 413
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=65.78 E-value=5.3 Score=50.29 Aligned_cols=43 Identities=21% Similarity=0.319 Sum_probs=31.0
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHH
Q 000129 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~ 1404 (2114)
..|++|.|+||||||.... .++..+.. .+. .++++=|..++..
T Consensus 53 ~~h~~i~G~tGsGKs~~~~-~li~~~~~--~g~--~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLR-ELAYTGLL--RGD--RMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHHHH-HHHHHHHH--TTC--EEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHHHH-HHHHHHHH--CCC--cEEEEeCCCchhH
Confidence 4579999999999999753 33433333 134 7899999988854
No 414
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=65.23 E-value=12 Score=51.35 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=17.8
Q ss_pred CCCcEEEEecCCCchHHHHHHH
Q 000129 1356 TDDNVLVAAPTGSGKTICSEFA 1377 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~l~ 1377 (2114)
...|+++.||+|+|||.++...
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~l 211 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGL 211 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHH
T ss_pred CCCceEEEcCCCCCHHHHHHHH
Confidence 3457999999999999877443
No 415
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=65.17 E-value=13 Score=47.44 Aligned_cols=19 Identities=37% Similarity=0.587 Sum_probs=15.9
Q ss_pred CCcEEEEecCCCchHHHHH
Q 000129 1357 DDNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~ 1375 (2114)
...+++.||+|+|||+.+-
T Consensus 64 p~GvLL~GppGtGKTtLar 82 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLAR 82 (499)
T ss_dssp CSEEEEECSSSSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3459999999999998763
No 416
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=64.10 E-value=1.4 Score=50.37 Aligned_cols=57 Identities=12% Similarity=0.071 Sum_probs=0.0
Q ss_pred CCccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhc
Q 000129 1932 DSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNR 1991 (2114)
Q Consensus 1932 ~s~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~ 1991 (2114)
.+.|.+|||||+..+++|.+.| +.|+.+|...+.++...+-++++...+.|...++.
T Consensus 14 ~~~L~~IpGIGpk~a~~Ll~~g---f~sve~L~~a~~~eL~~v~GIG~ktAe~I~~~l~~ 70 (241)
T 1vq8_Y 14 YTELTDISGVGPSKAESLREAG---FESVEDVRGADQSALADVSGIGNALAARIKADVGG 70 (241)
T ss_dssp ------------------------------------------------------------
T ss_pred hhHHhcCCCCCHHHHHHHHHcC---CCCHHHHHhCCHHHHHhccCCCHHHHHHHHHHHHH
Confidence 3679999999999999998888 99999999888888888888888888777766653
No 417
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=62.78 E-value=4.3 Score=47.23 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=19.1
Q ss_pred HHHcCCCcEEEEccCCCchHHHHH
Q 000129 506 SALSSADNILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 506 ~~l~~~~nvlv~APTGsGKT~~a~ 529 (2114)
.+...+.+++++||+|+|||.++-
T Consensus 24 ~~~~~~~~vll~G~~GtGKt~la~ 47 (265)
T 2bjv_A 24 HLAPLDKPVLIIGERGTGKELIAS 47 (265)
T ss_dssp HHTTSCSCEEEECCTTSCHHHHHH
T ss_pred HHhCCCCCEEEECCCCCcHHHHHH
Confidence 334556789999999999998763
No 418
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=61.56 E-value=5.8 Score=38.25 Aligned_cols=36 Identities=25% Similarity=0.273 Sum_probs=32.7
Q ss_pred CCccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHH
Q 000129 1932 DSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDE 1970 (2114)
Q Consensus 1932 ~s~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~ 1970 (2114)
-+.|..||++|+...+.|.+.| |.|+.+|..+...+
T Consensus 3 m~~L~dLPNig~~~e~~L~~~G---I~t~~~Lr~~Ga~~ 38 (93)
T 3mab_A 3 LANLSELPNIGKVLEQDLIKAG---IKTPVELKDVGSKE 38 (93)
T ss_dssp CCCGGGSTTCCHHHHHHHHHTT---CCSHHHHHHHCHHH
T ss_pred HHHHhhCCCCCHHHHHHHHHcC---CCCHHHHHhCCHHH
Confidence 3679999999999999999999 99999999887765
No 419
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=61.00 E-value=4.8 Score=46.84 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=18.9
Q ss_pred HHcCCCcEEEEecCCCchHHHHH
Q 000129 1353 LYNTDDNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1353 il~~~~nvli~ApTGSGKTl~~~ 1375 (2114)
+...+.++++.||+|+|||.++.
T Consensus 25 ~~~~~~~vll~G~~GtGKt~la~ 47 (265)
T 2bjv_A 25 LAPLDKPVLIIGERGTGKELIAS 47 (265)
T ss_dssp HTTSCSCEEEECCTTSCHHHHHH
T ss_pred HhCCCCCEEEECCCCCcHHHHHH
Confidence 34567789999999999998763
No 420
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=60.67 E-value=8.1 Score=41.65 Aligned_cols=20 Identities=30% Similarity=0.391 Sum_probs=16.8
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 000129 511 ADNILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l 530 (2114)
..+++++||+|+|||..+..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~ 62 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEG 62 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHH
Confidence 35799999999999987643
No 421
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=60.51 E-value=4.6 Score=39.28 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=39.0
Q ss_pred CccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhc
Q 000129 1933 SMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNR 1991 (2114)
Q Consensus 1933 s~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~ 1991 (2114)
..|.+||||++..++++.++| +++++.||.+ +-+++++.++.+...+..
T Consensus 26 ~eL~~lpGIG~~~A~~IV~~G--pF~s~edL~~--------V~Gig~~~~e~l~~~l~~ 74 (97)
T 3arc_U 26 AAFIQYRGLYPTLAKLIVKNA--PYESVEDVLN--------IPGLTERQKQILRENLEH 74 (97)
T ss_dssp GGGGGSTTCTTHHHHHHHHHC--CCSSGGGGGG--------CTTCCHHHHHHHHHTGGG
T ss_pred HHHhHCCCCCHHHHHHHHHcC--CCCCHHHHHh--------ccCCCHHHHHHHHHHhce
Confidence 468899999999999987766 5899999975 345788887777776664
No 422
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=60.22 E-value=6.9 Score=48.82 Aligned_cols=33 Identities=21% Similarity=0.430 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHH
Q 000129 496 LNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVA 528 (2114)
Q Consensus 496 l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a 528 (2114)
+.+-+..++..++.. ++.++|+||||||||+..
T Consensus 151 ~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 151 MTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp CCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 455667777776543 456889999999999864
No 423
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=60.00 E-value=7 Score=47.70 Aligned_cols=29 Identities=38% Similarity=0.439 Sum_probs=20.7
Q ss_pred cCCCcEEEEecCCCchHHHHHHHHHHHhhh
Q 000129 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQK 1384 (2114)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~~~l~il~~l~~ 1384 (2114)
..+..++|+||||||||+.. -+++..+..
T Consensus 121 ~~~g~i~I~GptGSGKTTlL-~~l~g~~~~ 149 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTL-AAMLDYLNN 149 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHH-HHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH-HHHHhcccC
Confidence 44567999999999999865 344454444
No 424
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=59.75 E-value=15 Score=46.99 Aligned_cols=52 Identities=15% Similarity=0.105 Sum_probs=32.9
Q ss_pred HcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 508 l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
+..++-++|.|++|+|||..++..+.+....+ +.+++|+.---. ..|+..++
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~----------g~~vl~~s~E~s-~~~l~~r~ 290 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAM----------GKKVGLAMLEES-VEETAEDL 290 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTS----------CCCEEEEESSSC-HHHHHHHH
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHhc----------CCcEEEEeccCC-HHHHHHHH
Confidence 44566789999999999998877666654331 125777754222 33444444
No 425
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=59.00 E-value=6 Score=48.48 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=20.3
Q ss_pred HHHHHcCCCcEEEEccCCCchHHHH
Q 000129 504 YKSALSSADNILLCAPTGAGKTNVA 528 (2114)
Q Consensus 504 i~~~l~~~~nvlv~APTGsGKT~~a 528 (2114)
+...+..+++++++||||||||+..
T Consensus 168 l~~~i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 168 LRRAVQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHHHHHTTCCEEEEESSSSCHHHHH
T ss_pred HHHHHhcCCEEEEECCCCCCHHHHH
Confidence 4445667889999999999999754
No 426
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=58.28 E-value=8.1 Score=48.57 Aligned_cols=43 Identities=21% Similarity=0.333 Sum_probs=30.2
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHH
Q 000129 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~ 564 (2114)
+.|++|.||||||||... ..++..+... +..++++=|-.++..
T Consensus 53 ~~h~~i~G~tGsGKs~~~-~~li~~~~~~----------g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL-RELAYTGLLR----------GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHHH-HHHHHHHHHT----------TCEEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHHH-HHHHHHHHHC----------CCcEEEEeCCCchhH
Confidence 457999999999999975 3344444332 236888889888753
No 427
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=58.13 E-value=6.1 Score=46.87 Aligned_cols=19 Identities=53% Similarity=0.847 Sum_probs=16.6
Q ss_pred CCcEEEEccCCCchHHHHH
Q 000129 511 ADNILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~ 529 (2114)
..+++++||+|+|||.++-
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5679999999999998764
No 428
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=57.96 E-value=17 Score=34.36 Aligned_cols=55 Identities=16% Similarity=0.094 Sum_probs=46.2
Q ss_pred ccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhcC
Q 000129 1934 MLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRF 1992 (2114)
Q Consensus 1934 ~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~~ 1992 (2114)
|+-+| .++......|.++| |.|+.||+....++..++-+++.+-+.+|.+.+..+
T Consensus 13 ~I~~L-~LSvRa~NcLkrag---I~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L~~~ 67 (86)
T 3k4g_A 13 PVDDL-ELTVRSANCLXAEA---IHYIGDLVQRTEVELLXTPNLGXXSLTEIXDVLASR 67 (86)
T ss_dssp BGGGG-CCCHHHHHHHHHTT---CCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHHTT
T ss_pred cHHHh-CCCHHHHHHHHHcC---CCcHHHHHhCCHHHHhhccccCcccHHHHHHHHHHc
Confidence 44455 56666667788999 999999999999988888789999999999999876
No 429
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=57.91 E-value=9.3 Score=41.16 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=18.9
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHh
Q 000129 1357 DDNVLVAAPTGSGKTICSEFAILRNH 1382 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l~il~~l 1382 (2114)
..++++.||+|+|||.++. .+.+.+
T Consensus 43 ~~~~ll~G~~G~GKT~l~~-~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVE-GLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHH-HHHHHH
T ss_pred CCceEEECCCCCCHHHHHH-HHHHHH
Confidence 4679999999999998774 334444
No 430
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=57.66 E-value=5.5 Score=47.52 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=18.4
Q ss_pred HcCCCcEEEEccCCCchHHHHH
Q 000129 508 LSSADNILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 508 l~~~~nvlv~APTGsGKT~~a~ 529 (2114)
...+.+++++||||+|||.++-
T Consensus 22 a~~~~~vLi~Ge~GtGKt~lAr 43 (304)
T 1ojl_A 22 APSDATVLIHGDSGTGKELVAR 43 (304)
T ss_dssp CSTTSCEEEESCTTSCHHHHHH
T ss_pred hCCCCcEEEECCCCchHHHHHH
Confidence 3566789999999999998763
No 431
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=57.48 E-value=4.3 Score=48.23 Aligned_cols=17 Identities=47% Similarity=0.790 Sum_probs=14.3
Q ss_pred cEEEEccCCCchHHHHH
Q 000129 513 NILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 513 nvlv~APTGsGKT~~a~ 529 (2114)
-++|+||||||||..+.
T Consensus 12 ~i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 12 AIFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 47789999999998763
No 432
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=57.46 E-value=6.5 Score=37.92 Aligned_cols=36 Identities=25% Similarity=0.273 Sum_probs=32.0
Q ss_pred CCccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHH
Q 000129 1932 DSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDE 1970 (2114)
Q Consensus 1932 ~s~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~ 1970 (2114)
...|..||+||+...+.|.+.| |.|+.||..+.+.+
T Consensus 3 ~~~L~~LPNiG~~~e~~L~~vG---I~s~e~L~~~Ga~~ 38 (93)
T 3bqs_A 3 LANLSELPNIGKVLEQDLIKAG---IKTPVELKDVGSKE 38 (93)
T ss_dssp CSCGGGSTTCCHHHHHHHHHTT---CCSHHHHHHHHHHH
T ss_pred hHHhhcCCCCCHHHHHHHHHcC---CCCHHHHHhCCHHH
Confidence 3568999999999999999999 99999999876654
No 433
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=57.40 E-value=7 Score=47.88 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=20.0
Q ss_pred HHHHHcCCCcEEEEecCCCchHHHH
Q 000129 1350 FTVLYNTDDNVLVAAPTGSGKTICS 1374 (2114)
Q Consensus 1350 ~~~il~~~~nvli~ApTGSGKTl~~ 1374 (2114)
+......+.+++|+||||||||+..
T Consensus 168 l~~~i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 168 LRRAVQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHHHHHTTCCEEEEESSSSCHHHHH
T ss_pred HHHHHhcCCEEEEECCCCCCHHHHH
Confidence 3444567888999999999999865
No 434
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=57.30 E-value=4.8 Score=46.92 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=17.9
Q ss_pred HcCCCcEEEEccCCCchHHHHH
Q 000129 508 LSSADNILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 508 l~~~~nvlv~APTGsGKT~~a~ 529 (2114)
+..++.++++||||||||+..-
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~ 43 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIA 43 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHH
Confidence 4556779999999999998653
No 435
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=56.84 E-value=5.1 Score=48.26 Aligned_cols=18 Identities=28% Similarity=0.617 Sum_probs=15.3
Q ss_pred CcEEEEccCCCchHHHHH
Q 000129 512 DNILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~ 529 (2114)
..++|+||||||||.++.
T Consensus 41 ~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 368899999999998763
No 436
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=56.59 E-value=4.5 Score=48.11 Aligned_cols=17 Identities=35% Similarity=0.599 Sum_probs=14.3
Q ss_pred cEEEEccCCCchHHHHH
Q 000129 513 NILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 513 nvlv~APTGsGKT~~a~ 529 (2114)
-++|+||||||||.++.
T Consensus 5 ~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCcCCHHHHHH
Confidence 47789999999998763
No 437
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=56.06 E-value=8 Score=47.55 Aligned_cols=38 Identities=24% Similarity=0.381 Sum_probs=24.5
Q ss_pred cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEE
Q 000129 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYI 1396 (2114)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I 1396 (2114)
..+..++|+||||||||+..- .++..+.. ...+ +++++
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~-~l~~~~~~-~~~g--~I~~~ 171 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIA-SMIDYINQ-TKSY--HIITI 171 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHH-HHHHHHHH-HSCC--EEEEE
T ss_pred cCCCEEEEECCCCCCHHHHHH-HHHhhcCc-CCCc--EEEEe
Confidence 456779999999999998653 34444433 1134 66554
No 438
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=56.02 E-value=11 Score=44.68 Aligned_cols=19 Identities=42% Similarity=0.662 Sum_probs=16.7
Q ss_pred CCcEEEEecCCCchHHHHH
Q 000129 1357 DDNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~ 1375 (2114)
..++++.||+|+|||.++.
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5689999999999998774
No 439
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=55.79 E-value=14 Score=43.00 Aligned_cols=48 Identities=21% Similarity=0.319 Sum_probs=33.4
Q ss_pred HHHHHhcCCCCCCHHHHH-HHHHHHcCC---C-cEEEEecCCCchHHHHHHHHHH
Q 000129 1331 LYEALYQGFKHFNPIQTQ-VFTVLYNTD---D-NVLVAAPTGSGKTICSEFAILR 1380 (2114)
Q Consensus 1331 ~~~~l~~gf~~~~~iQ~q-~~~~il~~~---~-nvli~ApTGSGKTl~~~l~il~ 1380 (2114)
.+-.++. ++..+|++-. ++..++++. . .+++.||.|+|||..+. ++.+
T Consensus 74 ~i~~~l~-~qg~~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~-ala~ 126 (267)
T 1u0j_A 74 RIYKILE-LNGYDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE-AIAH 126 (267)
T ss_dssp HHHHHHH-HTTCCHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH-HHHH
T ss_pred HHHHHHH-HcCCCHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH-HHHh
Confidence 3445554 7778898854 466677654 3 49999999999998874 4443
No 440
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=55.66 E-value=6.2 Score=47.09 Aligned_cols=22 Identities=27% Similarity=0.573 Sum_probs=18.7
Q ss_pred HHcCCCcEEEEecCCCchHHHH
Q 000129 1353 LYNTDDNVLVAAPTGSGKTICS 1374 (2114)
Q Consensus 1353 il~~~~nvli~ApTGSGKTl~~ 1374 (2114)
+..++.++++.||||+|||.++
T Consensus 21 ~a~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 21 VAPSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp HCSTTSCEEEESCTTSCHHHHH
T ss_pred HhCCCCcEEEECCCCchHHHHH
Confidence 3356778999999999999877
No 441
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=55.48 E-value=5.1 Score=43.62 Aligned_cols=20 Identities=45% Similarity=0.511 Sum_probs=16.9
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 000129 511 ADNILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l 530 (2114)
..+++++||+|||||.++-.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 35799999999999998754
No 442
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=55.23 E-value=7.4 Score=48.19 Aligned_cols=41 Identities=27% Similarity=0.466 Sum_probs=29.2
Q ss_pred CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHH
Q 000129 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEA 1401 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~ 1401 (2114)
.+.|++|.||||||||...-..+.+.... ++ +++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~---~~--~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQ---GS--RVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTT---TC--CEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHC---CC--EEEEEeCCcC
Confidence 46679999999999998775544443322 34 7788888765
No 443
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=54.92 E-value=4.7 Score=46.70 Aligned_cols=17 Identities=41% Similarity=0.636 Sum_probs=14.6
Q ss_pred cEEEEccCCCchHHHHH
Q 000129 513 NILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 513 nvlv~APTGsGKT~~a~ 529 (2114)
.++|+||||||||..+.
T Consensus 3 li~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 47899999999998764
No 444
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=54.90 E-value=5.4 Score=44.19 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=17.6
Q ss_pred cCCCcEEEEccCCCchHHHHHH
Q 000129 509 SSADNILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 509 ~~~~nvlv~APTGsGKT~~a~l 530 (2114)
.....++++||+|||||+++-.
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~ 44 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKA 44 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHH
Confidence 3456799999999999998744
No 445
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=54.70 E-value=6.1 Score=48.37 Aligned_cols=21 Identities=52% Similarity=0.695 Sum_probs=17.4
Q ss_pred CCCcEEEEccCCCchHHHHHH
Q 000129 510 SADNILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l 530 (2114)
...+++++||+|+|||.++-.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ 70 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAET 70 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 345799999999999997743
No 446
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=54.68 E-value=5 Score=42.88 Aligned_cols=18 Identities=39% Similarity=0.575 Sum_probs=15.3
Q ss_pred cEEEEccCCCchHHHHHH
Q 000129 513 NILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 513 nvlv~APTGsGKT~~a~l 530 (2114)
.++++||+|||||.++-.
T Consensus 3 ~I~l~G~~GsGKsT~a~~ 20 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKL 20 (179)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999998753
No 447
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=54.40 E-value=5.6 Score=46.32 Aligned_cols=21 Identities=38% Similarity=0.496 Sum_probs=17.5
Q ss_pred HcCCCcEEEEecCCCchHHHH
Q 000129 1354 YNTDDNVLVAAPTGSGKTICS 1374 (2114)
Q Consensus 1354 l~~~~nvli~ApTGSGKTl~~ 1374 (2114)
...++.++|.||||||||+..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 355677999999999999865
No 448
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=54.23 E-value=14 Score=34.32 Aligned_cols=55 Identities=11% Similarity=0.144 Sum_probs=44.8
Q ss_pred ccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhcC
Q 000129 1934 MLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRF 1992 (2114)
Q Consensus 1934 ~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~~ 1992 (2114)
++-+| .++......|.++| |.|+.||+....++..++-+++.+-+.+|.+.+..+
T Consensus 17 ~Ie~L-~LS~Ra~NcLk~ag---I~Tv~dL~~~se~dLlki~n~G~kSl~EI~~~L~e~ 71 (79)
T 3gfk_B 17 TIEEL-DLSVRSYNCLKRAG---INTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEEL 71 (79)
T ss_dssp BGGGS-CCBHHHHHHHHHTT---CCBHHHHTTCCHHHHTTSTTCHHHHHHHHHHHHHHT
T ss_pred cHHHh-CCCHHHHHHHHHhC---CCCHHHHHhCCHHHHHHcCCCCHhHHHHHHHHHHHc
Confidence 34455 56666667788999 999999999999887777779999999999888765
No 449
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=54.19 E-value=6.9 Score=42.57 Aligned_cols=19 Identities=16% Similarity=0.448 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchHHHHH
Q 000129 511 ADNILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~ 529 (2114)
++-++++||+|||||..+-
T Consensus 5 g~~i~i~GpsGsGKSTL~~ 23 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKN 23 (180)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3458899999999998753
No 450
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=53.64 E-value=6.1 Score=47.77 Aligned_cols=24 Identities=33% Similarity=0.700 Sum_probs=19.2
Q ss_pred HHHHHcCCCcEEEEccCCCchHHH
Q 000129 504 YKSALSSADNILLCAPTGAGKTNV 527 (2114)
Q Consensus 504 i~~~l~~~~nvlv~APTGsGKT~~ 527 (2114)
+...+..+++++++||||||||+.
T Consensus 164 l~~~i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 164 IKDGIAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHHHHHTCCEEEEESTTSCHHHH
T ss_pred hhhhccCCCEEEEECCCCCCHHHH
Confidence 444456678899999999999974
No 451
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=53.52 E-value=6.5 Score=48.14 Aligned_cols=20 Identities=50% Similarity=0.825 Sum_probs=17.2
Q ss_pred CCCcEEEEecCCCchHHHHH
Q 000129 1356 TDDNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~ 1375 (2114)
...++++.||+|+|||.++.
T Consensus 50 ~~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 45689999999999999873
No 452
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=53.09 E-value=6.2 Score=47.51 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=15.0
Q ss_pred CcEEEEecCCCchHHHH
Q 000129 1358 DNVLVAAPTGSGKTICS 1374 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~ 1374 (2114)
..++|+||||||||.++
T Consensus 41 ~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLS 57 (339)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46899999999999876
No 453
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=53.00 E-value=5.5 Score=47.32 Aligned_cols=16 Identities=38% Similarity=0.632 Sum_probs=14.0
Q ss_pred cEEEEecCCCchHHHH
Q 000129 1359 NVLVAAPTGSGKTICS 1374 (2114)
Q Consensus 1359 nvli~ApTGSGKTl~~ 1374 (2114)
-++|+||||||||..+
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4788999999999876
No 454
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=52.73 E-value=5.6 Score=47.34 Aligned_cols=16 Identities=44% Similarity=0.509 Sum_probs=14.0
Q ss_pred cEEEEecCCCchHHHH
Q 000129 1359 NVLVAAPTGSGKTICS 1374 (2114)
Q Consensus 1359 nvli~ApTGSGKTl~~ 1374 (2114)
-++|+||||||||.++
T Consensus 5 ~i~i~GptgsGKt~la 20 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCcCCHHHHH
Confidence 4788999999999876
No 455
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=52.48 E-value=7 Score=43.67 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=16.6
Q ss_pred CCCcEEEEecCCCchHHHHH
Q 000129 1356 TDDNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~ 1375 (2114)
.+.-++++||+|||||+++-
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 45668899999999998764
No 456
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=52.36 E-value=7.7 Score=42.21 Aligned_cols=20 Identities=10% Similarity=0.262 Sum_probs=16.2
Q ss_pred CCcEEEEecCCCchHHHHHH
Q 000129 1357 DDNVLVAAPTGSGKTICSEF 1376 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l 1376 (2114)
+.-++|+||+|||||+..-.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~ 24 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNT 24 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 45688999999999987633
No 457
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=52.30 E-value=47 Score=39.15 Aligned_cols=19 Identities=26% Similarity=0.344 Sum_probs=14.7
Q ss_pred CCcEEEEecCCCchHHHHH
Q 000129 1357 DDNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~ 1375 (2114)
+..+.+.+++|+|||+.+.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~ 116 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAA 116 (295)
T ss_dssp SEEEEEECCTTTTHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3457788999999997653
No 458
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=52.24 E-value=7.7 Score=43.32 Aligned_cols=20 Identities=35% Similarity=0.494 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCchHHHHH
Q 000129 510 SADNILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~ 529 (2114)
.+.-++++||+|||||.++-
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 34568899999999998753
No 459
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=52.19 E-value=96 Score=31.62 Aligned_cols=88 Identities=17% Similarity=0.196 Sum_probs=55.7
Q ss_pred hcCCceEEEEEEeccccccCCCcEEEEEEEEEcCCCCcccCccccCCCCCCccccEEEEEEECCCCeEEEEEEeeccccc
Q 000129 1990 NRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKS 2069 (2114)
Q Consensus 1990 ~~~P~i~v~~~v~~~~~v~~g~~~~l~v~l~r~~~~~~~~~~v~ap~fp~~k~e~Wwlvvgd~~~~~L~~~krv~~~~~~ 2069 (2114)
...|.+.+ ++.....+.+|+.++++|+++.. +. .-++-|. -.|+ + .|+++.-+.++|....
T Consensus 14 ~~~pDL~V--~is~P~~v~~G~~~ti~vtV~N~--G~-----~~a~~~~----V~ly--v----ng~~v~t~~v~La~G~ 74 (127)
T 3idu_A 14 FEFPDLTV--EIKGPDVVGVNKLAEYEVHVKNL--GG-----IGVPSTK----VRVY--I----NGTLYKNWTVSLGPKE 74 (127)
T ss_dssp CSSCCEEE--EEESCSEECTTCCEEEEEEEEEC--SS-----SCEEEEE----EEEE--E----TTEEEEEEEEEECTTC
T ss_pred ccCCCeEE--EecCCCcccCCCEEEEEEEEEEC--CC-----CccCCcE----EEEE--E----CCEEEeeEEeccCCCC
Confidence 44677766 55566679999999999999873 31 1121111 1222 2 5677776667777655
Q ss_pred EEEEEEEe-cCCCCceEEEEEEEecCcc
Q 000129 2070 RVKLDFAA-PAEAGKKTYTLYFMCDSYM 2096 (2114)
Q Consensus 2070 ~~~l~f~~-p~~~G~~~~~l~~~sDsY~ 2096 (2114)
+..+.|.. |..+|.|.+++.+-++.-+
T Consensus 75 s~tv~f~~~~~~~G~~~v~AvVD~~n~I 102 (127)
T 3idu_A 75 EKVLTFNWTPTQEGMYRINATVDEENTV 102 (127)
T ss_dssp EEEEEEEECCSSCEEEEEEEEESTTCCS
T ss_pred eEEEEEEEEcCCCcEEEEEEEEcCCCcE
Confidence 55555554 4458888888877776654
No 460
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=52.10 E-value=6.8 Score=47.34 Aligned_cols=25 Identities=36% Similarity=0.352 Sum_probs=19.3
Q ss_pred HHHHHcCCCcEEEEecCCCchHHHH
Q 000129 1350 FTVLYNTDDNVLVAAPTGSGKTICS 1374 (2114)
Q Consensus 1350 ~~~il~~~~nvli~ApTGSGKTl~~ 1374 (2114)
+......+++++|.||||||||+..
T Consensus 164 l~~~i~~g~~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 164 IKDGIAIGKNVIVCGGTGSGKTTYI 188 (330)
T ss_dssp HHHHHHHTCCEEEEESTTSCHHHHH
T ss_pred hhhhccCCCEEEEECCCCCCHHHHH
Confidence 3334456778999999999999854
No 461
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=52.00 E-value=7.2 Score=43.23 Aligned_cols=18 Identities=28% Similarity=0.560 Sum_probs=14.9
Q ss_pred CcEEEEccCCCchHHHHH
Q 000129 512 DNILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~ 529 (2114)
.-++++||||+|||..+.
T Consensus 35 ~~ilI~GpsGsGKStLA~ 52 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETAL 52 (205)
T ss_dssp EEEEEECCCTTTTHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 348999999999997653
No 462
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=51.45 E-value=6.9 Score=46.88 Aligned_cols=17 Identities=53% Similarity=0.835 Sum_probs=14.8
Q ss_pred cEEEEccCCCchHHHHH
Q 000129 513 NILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 513 nvlv~APTGsGKT~~a~ 529 (2114)
.++|+||||||||.++.
T Consensus 7 ~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58899999999998763
No 463
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=51.32 E-value=12 Score=41.99 Aligned_cols=38 Identities=11% Similarity=0.167 Sum_probs=28.0
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHH
Q 000129 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (2114)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ra 561 (2114)
-.++++|-|||||..++-.+.+....+ .+++++.|.+.
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~g-----------~kVli~k~~~d 67 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFAK-----------QHAIVFKPCID 67 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTT-----------CCEEEEECC--
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCC-----------CEEEEEEeccC
Confidence 356899999999998877776665543 37999999874
No 464
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=51.30 E-value=7.3 Score=47.55 Aligned_cols=21 Identities=29% Similarity=0.465 Sum_probs=17.0
Q ss_pred HcCCCcEEEEccCCCchHHHH
Q 000129 508 LSSADNILLCAPTGAGKTNVA 528 (2114)
Q Consensus 508 l~~~~nvlv~APTGsGKT~~a 528 (2114)
...+..++|+||||||||+..
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHH
T ss_pred hCCCCEEEEECCCCCCHHHHH
Confidence 344567999999999999864
No 465
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=51.18 E-value=11 Score=42.10 Aligned_cols=43 Identities=9% Similarity=0.298 Sum_probs=26.9
Q ss_pred CCCCCHHH-HHHHHHHHcC---CCcEEEEecCCCchHHHHHHHHHHHh
Q 000129 1339 FKHFNPIQ-TQVFTVLYNT---DDNVLVAAPTGSGKTICSEFAILRNH 1382 (2114)
Q Consensus 1339 f~~~~~iQ-~q~~~~il~~---~~nvli~ApTGSGKTl~~~l~il~~l 1382 (2114)
|+..++++ -..+..++++ ..++++.||.|+|||..+ .++.+.+
T Consensus 36 yq~~~~~~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~l 82 (212)
T 1tue_A 36 YQQIEFITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHFI 82 (212)
T ss_dssp HTTCCHHHHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHHH
T ss_pred HcCcCHHHHHHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHHh
Confidence 33344443 3445555553 235999999999999876 5555544
No 466
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=51.04 E-value=5.8 Score=45.94 Aligned_cols=17 Identities=41% Similarity=0.329 Sum_probs=14.7
Q ss_pred cEEEEecCCCchHHHHH
Q 000129 1359 NVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1359 nvli~ApTGSGKTl~~~ 1375 (2114)
.++|+||||||||+.+.
T Consensus 3 li~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 47899999999998774
No 467
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=50.95 E-value=8.2 Score=42.69 Aligned_cols=21 Identities=19% Similarity=0.263 Sum_probs=17.7
Q ss_pred CCCcEEEEecCCCchHHHHHH
Q 000129 1356 TDDNVLVAAPTGSGKTICSEF 1376 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~l 1376 (2114)
...++++.||+|||||+++-.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~ 44 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKA 44 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHH
Confidence 456799999999999998743
No 468
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=50.73 E-value=8 Score=41.99 Aligned_cols=20 Identities=25% Similarity=0.297 Sum_probs=17.0
Q ss_pred CCcEEEEecCCCchHHHHHH
Q 000129 1357 DDNVLVAAPTGSGKTICSEF 1376 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l 1376 (2114)
..+++++||+|||||+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 45799999999999998754
No 469
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=50.69 E-value=6.1 Score=42.14 Aligned_cols=18 Identities=28% Similarity=0.514 Sum_probs=15.4
Q ss_pred cEEEEecCCCchHHHHHH
Q 000129 1359 NVLVAAPTGSGKTICSEF 1376 (2114)
Q Consensus 1359 nvli~ApTGSGKTl~~~l 1376 (2114)
.++++||+|||||+++..
T Consensus 3 ~I~l~G~~GsGKsT~a~~ 20 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKL 20 (179)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999998753
No 470
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=50.23 E-value=8.2 Score=42.76 Aligned_cols=20 Identities=30% Similarity=0.589 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 000129 511 ADNILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l 530 (2114)
+..+.++||+|||||...-+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~ 23 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKK 23 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 35589999999999987643
No 471
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=50.14 E-value=11 Score=46.51 Aligned_cols=41 Identities=22% Similarity=0.412 Sum_probs=28.3
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHH
Q 000129 510 SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (2114)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ra 561 (2114)
.+.|++|+||||||||...-..+.+.... +.+++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~-----------~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQ-----------GSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTT-----------TCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHC-----------CCEEEEEeCCcC
Confidence 45689999999999998765544444321 235777777655
No 472
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=50.01 E-value=6.5 Score=42.38 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=15.4
Q ss_pred CcEEEEccCCCchHHHHH
Q 000129 512 DNILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~ 529 (2114)
..++++||.|||||.++-
T Consensus 4 ~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 358899999999999874
No 473
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=49.98 E-value=15 Score=46.88 Aligned_cols=42 Identities=33% Similarity=0.370 Sum_probs=26.5
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEccc
Q 000129 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPL 1399 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Pt 1399 (2114)
..+++|.|+||||||.+.-..++..+....+ +.++.+++=|.
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p-~~v~l~liDpK 208 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSMLYKAQP-EDVRFIMIDPK 208 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHHHTTCCT-TTEEEEEECCS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhCCC-ceEEEEEECCc
Confidence 4569999999999999875555554544222 33344444443
No 474
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=49.84 E-value=12 Score=41.94 Aligned_cols=36 Identities=25% Similarity=0.239 Sum_probs=27.1
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHH
Q 000129 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~ 1375 (2114)
+.-.+.-|..++..+- .++.+.|.||.|||||+..-
T Consensus 5 i~pk~~g~~~~l~~i~-~Ge~~~liG~nGsGKSTLl~ 40 (208)
T 3b85_A 5 IRPKTLGQKHYVDAID-TNTIVFGLGPAGSGKTYLAM 40 (208)
T ss_dssp CCCCSHHHHHHHHHHH-HCSEEEEECCTTSSTTHHHH
T ss_pred cccCCHhHHHHHHhcc-CCCEEEEECCCCCCHHHHHH
Confidence 3444556778888874 46668999999999998753
No 475
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=49.80 E-value=6.7 Score=43.17 Aligned_cols=16 Identities=31% Similarity=0.771 Sum_probs=13.9
Q ss_pred cEEEEccCCCchHHHH
Q 000129 513 NILLCAPTGAGKTNVA 528 (2114)
Q Consensus 513 nvlv~APTGsGKT~~a 528 (2114)
-++|+||+|+|||.+.
T Consensus 3 pIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLL 18 (186)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4899999999999864
No 476
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=49.34 E-value=14 Score=41.44 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHH
Q 000129 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~ 529 (2114)
.--+.-|..++..+ ..++.+.+.+|.|||||+.+-
T Consensus 6 ~pk~~g~~~~l~~i-~~Ge~~~liG~nGsGKSTLl~ 40 (208)
T 3b85_A 6 RPKTLGQKHYVDAI-DTNTIVFGLGPAGSGKTYLAM 40 (208)
T ss_dssp CCCSHHHHHHHHHH-HHCSEEEEECCTTSSTTHHHH
T ss_pred ccCCHhHHHHHHhc-cCCCEEEEECCCCCCHHHHHH
Confidence 33455677788775 556768899999999998653
No 477
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=49.29 E-value=21 Score=42.57 Aligned_cols=53 Identities=23% Similarity=0.268 Sum_probs=29.7
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEc--ccHHHHHHHHHHHHHHh
Q 000129 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA--PLEALAKERYRDWEIKF 1414 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~--Ptr~La~q~~~~~~~~f 1414 (2114)
...+++.+|+|+|||+.+.... ..+.. .++ +++++. +.|.-+.+....|.++.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA-~~l~~--~g~--kV~lv~~D~~r~~a~eqL~~~~~~~ 158 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLA-KMFVD--EGK--SVVLAAADTFRAAAIEQLKIWGERV 158 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH-HHHHH--TTC--CEEEEEECTTCHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHH-HHHHh--cCC--EEEEEccccccHHHHHHHHHHHHHc
Confidence 3457899999999997653322 22222 233 555443 44554545555565443
No 478
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=49.17 E-value=7.9 Score=41.49 Aligned_cols=19 Identities=42% Similarity=0.754 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCchHHHHH
Q 000129 511 ADNILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~ 529 (2114)
+..++++||.|||||+++-
T Consensus 4 ~~~i~l~G~~GsGKSTl~~ 22 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGR 22 (173)
T ss_dssp CCCEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3569999999999998763
No 479
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=48.95 E-value=5.8 Score=43.39 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=16.8
Q ss_pred cCCCcEEEEccCCCchHHHHH
Q 000129 509 SSADNILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 509 ~~~~nvlv~APTGsGKT~~a~ 529 (2114)
..++.++++||.|||||+.+-
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~ 27 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAE 27 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 345678899999999998753
No 480
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=48.90 E-value=15 Score=41.53 Aligned_cols=53 Identities=13% Similarity=0.176 Sum_probs=46.2
Q ss_pred cccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhc
Q 000129 1935 LLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNR 1991 (2114)
Q Consensus 1935 L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~ 1991 (2114)
|.++||+|+..++++.++ +.|+.++++++.++...+.++++...+.+.++++.
T Consensus 164 L~~i~gVg~~~a~~Ll~~----fgs~~~l~~a~~e~L~~v~GiG~~~a~~i~~~~~~ 216 (219)
T 2bgw_A 164 LQSFPGIGRRTAERILER----FGSLERFFTASKAEISKVEGIGEKRAEEIKKILMT 216 (219)
T ss_dssp HHTSTTCCHHHHHHHHHH----HSSHHHHTTCCHHHHHHSTTCCHHHHHHHHHHHHS
T ss_pred HhcCCCCCHHHHHHHHHH----cCCHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHhc
Confidence 668999999999998764 56899999999998888888999999999998864
No 481
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=48.73 E-value=8.6 Score=46.27 Aligned_cols=26 Identities=23% Similarity=0.208 Sum_probs=19.7
Q ss_pred HHHHHcCCCcEEEEccCCCchHHHHH
Q 000129 504 YKSALSSADNILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 504 i~~~l~~~~nvlv~APTGsGKT~~a~ 529 (2114)
+..++..+.++++.||+|+|||..+-
T Consensus 39 l~~~l~~~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 39 LLIGICTGGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HHHHHHHTCCEEEESCCCHHHHHHHH
T ss_pred HHHHHHcCCeEEEECCCCCcHHHHHH
Confidence 33344456789999999999998764
No 482
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=48.70 E-value=8.3 Score=49.26 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=19.1
Q ss_pred HHHHcCCCcEEEEccCCCchHHHH
Q 000129 505 KSALSSADNILLCAPTGAGKTNVA 528 (2114)
Q Consensus 505 ~~~l~~~~nvlv~APTGsGKT~~a 528 (2114)
..++.++.+++++||+|+|||..+
T Consensus 35 ~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 35 LLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHhcCCeeEeecCchHHHHHHH
Confidence 334455678999999999999875
No 483
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=48.67 E-value=26 Score=33.01 Aligned_cols=55 Identities=15% Similarity=0.161 Sum_probs=41.9
Q ss_pred ccCCCCCHHHHHHHHhCCC-chhhhccCChHHhhhhhcCchh-----HHHHHHHHhcCCce
Q 000129 1145 RQFNGIPNEILMKLEKKDF-AWERYYDLSPQELGELIRFPKM-----GRTLHKFVHQFPKL 1199 (2114)
Q Consensus 1145 ~q~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~P~~ 1199 (2114)
.-.|++++..+++|.++|| ++.++...++.++.++.+.+-. .+.+.+.+.-+|.-
T Consensus 7 ~~~p~Lse~~~~~L~~~~I~Tv~Dfl~~d~~eL~~~~~ls~~~v~~l~r~l~~~~s~~~~~ 67 (83)
T 2kz3_A 7 GLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQFSAFPVN 67 (83)
T ss_dssp TSSTTCCHHHHHHHHHTTCCCHHHHTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHCSSCCC
T ss_pred ccCCCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCcCc
Confidence 3458999999999999998 7899999999999999876422 24455555555543
No 484
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=48.54 E-value=8.2 Score=46.55 Aligned_cols=17 Identities=35% Similarity=0.726 Sum_probs=14.7
Q ss_pred cEEEEccCCCchHHHHH
Q 000129 513 NILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 513 nvlv~APTGsGKT~~a~ 529 (2114)
.++|+||||||||.++.
T Consensus 9 lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCcCcHHHHHH
Confidence 57899999999998763
No 485
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=48.43 E-value=20 Score=38.92 Aligned_cols=63 Identities=10% Similarity=0.003 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHcC-CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHH
Q 000129 1342 FNPIQTQVFTVLYNT-DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYR 1408 (2114)
Q Consensus 1342 ~~~iQ~q~~~~il~~-~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~ 1408 (2114)
-++.|..++..++.+ +.-.+|.++-|++||....-.++..... .+. ++.+++|+..-.....+
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~--~Gr--~V~vLAp~~~s~~~l~~ 98 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE--QGR--EVQIIAADRRSQMNMKQ 98 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH--TTC--CEEEECSTTHHHHHHSC
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh--cCe--EEEEEcCchHHHHHHHh
Confidence 347899999998764 4556788999999998754444443333 233 89999999877665433
No 486
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=48.15 E-value=13 Score=41.40 Aligned_cols=33 Identities=21% Similarity=0.571 Sum_probs=22.1
Q ss_pred HHHHHHcCC---CcEEEEccCCCchHHHHHHHHHHHH
Q 000129 503 VYKSALSSA---DNILLCAPTGAGKTNVAVLTILQQL 536 (2114)
Q Consensus 503 ~i~~~l~~~---~nvlv~APTGsGKT~~a~l~il~~l 536 (2114)
++...+.+- .++++.||.|+|||..+ .++.+.+
T Consensus 47 ~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~l 82 (212)
T 1tue_A 47 ALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHFI 82 (212)
T ss_dssp HHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHHH
T ss_pred HHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHHh
Confidence 344444442 25999999999999876 4455544
No 487
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=47.58 E-value=8.5 Score=46.10 Aligned_cols=16 Identities=31% Similarity=0.547 Sum_probs=14.5
Q ss_pred cEEEEecCCCchHHHH
Q 000129 1359 NVLVAAPTGSGKTICS 1374 (2114)
Q Consensus 1359 nvli~ApTGSGKTl~~ 1374 (2114)
.++|+||||||||.++
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999876
No 488
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=47.55 E-value=10 Score=41.86 Aligned_cols=21 Identities=38% Similarity=0.681 Sum_probs=16.7
Q ss_pred cCCCcEEEEccCCCchHHHHH
Q 000129 509 SSADNILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 509 ~~~~nvlv~APTGsGKT~~a~ 529 (2114)
..++-+.+.||+|||||+.+-
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~ 25 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVR 25 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHH
Confidence 345668899999999998754
No 489
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=47.38 E-value=9 Score=42.44 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=15.0
Q ss_pred CCcEEEEecCCCchHHHH
Q 000129 1357 DDNVLVAAPTGSGKTICS 1374 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~ 1374 (2114)
+.-++|.||||+|||.++
T Consensus 34 g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TEEEEEECCCTTTTHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 345899999999999766
No 490
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=47.35 E-value=9.5 Score=42.27 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=15.9
Q ss_pred CCcEEEEecCCCchHHHHHH
Q 000129 1357 DDNVLVAAPTGSGKTICSEF 1376 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l 1376 (2114)
+..+.|+||+|||||+..-+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~ 23 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKK 23 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 45689999999999987643
No 491
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=47.08 E-value=8.1 Score=47.50 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=17.8
Q ss_pred HcCCCcEEEEccCCCchHHHHH
Q 000129 508 LSSADNILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 508 l~~~~nvlv~APTGsGKT~~a~ 529 (2114)
+..++.++++||||||||+..-
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~ 154 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIA 154 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHH
Confidence 3556679999999999998653
No 492
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=46.85 E-value=8.3 Score=41.52 Aligned_cols=18 Identities=11% Similarity=0.222 Sum_probs=15.6
Q ss_pred CcEEEEecCCCchHHHHH
Q 000129 1358 DNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~ 1375 (2114)
..++++|+.|||||+++-
T Consensus 4 ~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999998873
No 493
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=46.79 E-value=7.9 Score=41.68 Aligned_cols=17 Identities=35% Similarity=0.346 Sum_probs=14.7
Q ss_pred cEEEEccCCCchHHHHH
Q 000129 513 NILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 513 nvlv~APTGsGKT~~a~ 529 (2114)
.++++||.|||||.++-
T Consensus 4 ~I~i~G~~GsGKST~a~ 20 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAR 20 (181)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEecCCCCCHHHHHH
Confidence 47899999999998764
No 494
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=46.77 E-value=7.8 Score=41.33 Aligned_cols=18 Identities=33% Similarity=0.283 Sum_probs=15.4
Q ss_pred cEEEEccCCCchHHHHHH
Q 000129 513 NILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 513 nvlv~APTGsGKT~~a~l 530 (2114)
.++++||.|||||+++-.
T Consensus 3 ~i~l~G~~GsGKsT~~~~ 20 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAK 20 (173)
T ss_dssp EEEEECSSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999998753
No 495
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=46.63 E-value=9.1 Score=41.41 Aligned_cols=21 Identities=38% Similarity=0.466 Sum_probs=17.3
Q ss_pred CCCcEEEEccCCCchHHHHHH
Q 000129 510 SADNILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l 530 (2114)
...+++++||.|||||.++-.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~ 30 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKE 30 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHH
Confidence 345799999999999998753
No 496
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=46.31 E-value=10 Score=42.12 Aligned_cols=22 Identities=23% Similarity=0.593 Sum_probs=17.7
Q ss_pred cCCCcEEEEccCCCchHHHHHH
Q 000129 509 SSADNILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 509 ~~~~nvlv~APTGsGKT~~a~l 530 (2114)
..+..++++||+|||||.++-.
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~ 31 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKK 31 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHH
Confidence 3456789999999999987643
No 497
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=46.28 E-value=11 Score=41.63 Aligned_cols=20 Identities=35% Similarity=0.503 Sum_probs=16.4
Q ss_pred CCCcEEEEccCCCchHHHHH
Q 000129 510 SADNILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~ 529 (2114)
.+..+.++||+|||||+++-
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~ 24 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRK 24 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45568899999999998764
No 498
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=46.14 E-value=11 Score=41.61 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=16.5
Q ss_pred CCCcEEEEecCCCchHHHHH
Q 000129 1356 TDDNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~ 1375 (2114)
.+..+.+.||+|||||+..-
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~ 25 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVR 25 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 45668899999999998763
No 499
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=46.09 E-value=11 Score=41.73 Aligned_cols=19 Identities=16% Similarity=0.517 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchHHHHH
Q 000129 511 ADNILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~ 529 (2114)
++-++++||+|+|||...-
T Consensus 19 g~~ivl~GPSGaGKsTL~~ 37 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKN 37 (197)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHH
Confidence 4558899999999998653
No 500
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=46.07 E-value=9 Score=41.79 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=16.6
Q ss_pred CCCcEEEEecCCCchHHHHH
Q 000129 1356 TDDNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~ 1375 (2114)
.+..+++.||.|||||+.+-
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~ 27 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAE 27 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45678999999999998763
Done!