BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000132
(2109 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OLS|A Chain A, The Crystal Structure Of The Phosphoenolpyruvate Synthase
From Neisseria Meningitidis
Length = 794
Score = 37.4 bits (85), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 1254 RALCDVGNSTKKGSSAGYIGRKGIGFKSVFRVTDAPEIHSNGFHVKFDTSEGQIGFVLPT 1313
RA V N + A I R+ +G +V +A E+ NG V +EG GF+
Sbjct: 408 RASAIVTNRGGRTCHAAIIARE-LGIPAVVGCGNATELLKNGQEVTVSCAEGDTGFIYAG 466
Query: 1314 LVPPFNIDMFCRLLSKDPVQLESKCWNTCIRLPFRTKFSEGIAM 1357
L+ D+ + K PV++ N + F SEGI +
Sbjct: 467 LLDVQITDVALDNMPKAPVKVMMNVGNPELAFSFANLPSEGIGL 510
>pdb|3C0E|A Chain A, Yeast Hsp82 N-Terminal Domain: Effects Of Mutants 98-99 Ks-
Aa
pdb|3C11|A Chain A, Yeast Hsp82 N-Terminal Domain-Geldanamycin Complex: Effects
Of Mutants 98-99 Ks-Aa
Length = 240
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 33/151 (21%)
Query: 1171 GLGPNISNMESNMLKKQHARLGRALHCLSQELYSQDSHFLLELVQNADDNIY-------- 1222
GL P S+M S + Q A + + + + +YS FL EL+ NA D +
Sbjct: 13 GLVPRGSHMASETFEFQ-AEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLS 71
Query: 1223 -PENVE--PTLTFI------------LQESGI-----VVLNNEQGFSAENIRALCDVGNS 1262
P+ +E P L FI +++SGI ++NN +A +A + +
Sbjct: 72 DPKQLETEPDL-FIRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAAAGTKAFME---A 127
Query: 1263 TKKGSSAGYIGRKGIGFKSVFRVTDAPEIHS 1293
G+ IG+ G+GF S+F V D ++ S
Sbjct: 128 LSAGADVSMIGQFGVGFYSLFLVADRVQVIS 158
>pdb|1ZW9|A Chain A, Yeast Hsp82 In Complex With The Novel Hsp90 Inhibitor
8-(6-Bromo-
Benzo[1,
3]dioxol-5-Ylsulfanyl)-9-(3-Isopropylamino-Propyl)-
Adenine
pdb|1ZWH|A Chain A, Yeast Hsp82 In Complex With The Novel Hsp90 Inhibitor
Radester Amine
pdb|2FXS|A Chain A, Yeast Hsp82 In Complex With The Novel Hsp90 Inhibitor
Radamide
Length = 240
Score = 34.3 bits (77), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 33/151 (21%)
Query: 1171 GLGPNISNMESNMLKKQHARLGRALHCLSQELYSQDSHFLLELVQNADDNIY-------- 1222
GL P S+M S + Q A + + + + +YS FL EL+ NA D +
Sbjct: 13 GLVPRGSHMASETFEFQ-AEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLS 71
Query: 1223 -PENVE--PTLTFI------------LQESGI-----VVLNNEQGFSAENIRALCDVGNS 1262
P+ +E P L FI +++SGI ++NN + +A + +
Sbjct: 72 DPKQLETEPDL-FIRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFME---A 127
Query: 1263 TKKGSSAGYIGRKGIGFKSVFRVTDAPEIHS 1293
G+ IG+ G+GF S+F V D ++ S
Sbjct: 128 LSAGADVSMIGQFGVGFYSLFLVADRVQVIS 158
>pdb|2IOR|A Chain A, Crystal Structure Of The N-Terminal Domain Of Htpg, The
Escherichia Coli Hsp90, Bound To Adp
Length = 235
Score = 34.3 bits (77), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 60/145 (41%), Gaps = 30/145 (20%)
Query: 1171 GLGPNISNMESNMLKKQHARLGRALHCLSQELYSQDSHFLLELVQNADD----------- 1219
GL P S+M+ + + + + LH + LYS FL EL+ NA D
Sbjct: 13 GLVPRGSHMKGQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALS 72
Query: 1220 --NIYPENVE--PTLTFILQESGIVVLNNEQGFSAENIRALCDVGNSTKKGS-------- 1267
++Y + E ++F + + + +N G + + + + +G K G+
Sbjct: 73 NPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEV--IDHLGTIAKSGTKSFLESLG 130
Query: 1268 -----SAGYIGRKGIGFKSVFRVTD 1287
+ IG+ G+GF S F V D
Sbjct: 131 SDQAKDSQLIGQFGVGFYSAFIVAD 155
>pdb|2J2M|A Chain A, Crystal Structure Analysis Of Catalase From Exiguobacterium
Oxidotolerans
pdb|2J2M|B Chain B, Crystal Structure Analysis Of Catalase From Exiguobacterium
Oxidotolerans
pdb|2J2M|C Chain C, Crystal Structure Analysis Of Catalase From Exiguobacterium
Oxidotolerans
pdb|2J2M|D Chain D, Crystal Structure Analysis Of Catalase From Exiguobacterium
Oxidotolerans
Length = 491
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 1246 QGFSAENIRALCDVGNSTKKGSSAGYIGRKGIG------FKSVFRVTDAPEI--HSNGFH 1297
+GF A + V NS KK + A ++ +G F +V T +PE GF
Sbjct: 58 RGFGAHGV---FKVKNSMKKYTKAAFLQEEGTEVPVFARFSTVIHGTHSPETLRDPRGFS 114
Query: 1298 VKFDTSEGQIGFV 1310
VKF T EG FV
Sbjct: 115 VKFYTEEGNWDFV 127
>pdb|3PEH|A Chain A, Crystal Structure Of The N-Terminal Domain Of An Hsp90 From
Plasmodium Falciparum, Pfl1070c In The Presence Of A
Thienopyrimidine Derivative
pdb|3PEH|B Chain B, Crystal Structure Of The N-Terminal Domain Of An Hsp90 From
Plasmodium Falciparum, Pfl1070c In The Presence Of A
Thienopyrimidine Derivative
pdb|3PEJ|A Chain A, Crystal Structure Of The N-Terminal Domain Of An Hsp90 From
Plasmodium Falciparum, Pfl1070c In The Presence Of
Macbecin
pdb|3PEJ|B Chain B, Crystal Structure Of The N-Terminal Domain Of An Hsp90 From
Plasmodium Falciparum, Pfl1070c In The Presence Of
Macbecin
Length = 281
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 63/155 (40%), Gaps = 29/155 (18%)
Query: 1164 SIRRDEFGLGPNISNMESNMLKKQHARLGRALHCLSQELYSQDSHFLLELVQNA------ 1217
S R + + GP S MES+ + + RL + + LY+Q FL EL+ NA
Sbjct: 9 SGRENLYFQGPTES-MESHQYQTEVTRL---MDIIVNSLYTQKEVFLRELISNAADALEK 64
Query: 1218 -------DDNIYPENVEPTLTFILQESGIVVLNNEQGFSAENIRALCDVGNSTKKGSS-- 1268
D+++ E + + + ++ + G + + ++G K G+S
Sbjct: 65 IRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTGIGMTKVDLINNLGTIAKSGTSNF 124
Query: 1269 ----------AGYIGRKGIGFKSVFRVTDAPEIHS 1293
IG+ G+GF S F V D +++
Sbjct: 125 LEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYT 159
>pdb|2XJJ|A Chain A, Structre Of Hsp90 With Small Molecule Inhibitor Bound
pdb|2XJJ|B Chain B, Structre Of Hsp90 With Small Molecule Inhibitor Bound
Length = 249
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/171 (20%), Positives = 68/171 (39%), Gaps = 39/171 (22%)
Query: 1171 GLGPNISNMESNMLKKQ------HARLGRALHCLSQELYSQDSHFLLELVQNADD----- 1219
GL P S+M+ M +++ A + + + + YS FL EL+ N+ D
Sbjct: 13 GLVPRGSHMDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKI 72
Query: 1220 -------------------NIYPENVEPTLTFILQESGIV---VLNNEQGFSAENIRALC 1257
N+ P + TLT + G+ ++NN + +A
Sbjct: 73 RYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFM 132
Query: 1258 DVGNSTKKGSSAGYIGRKGIGFKSVFRVTDAPEI---HSNGFHVKFDTSEG 1305
+ + + G+ IG+ G+GF S + V + + H++ +++S G
Sbjct: 133 E---ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDVQYAWESSAG 180
>pdb|2YGE|A Chain A, E88g-n92l Mutant Of N-term Hsp90 Complexed With Geldanamycin
Length = 220
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 38/137 (27%)
Query: 1188 HARLGRALHCLSQELYSQDSHFLLELVQNADDNIY---------PENVE--PTLTFI--- 1233
A + + + + +YS FL EL+ NA D + P+ +E P L FI
Sbjct: 9 QAEITQLMSLIINTVYSNKEIFLRELISNASDALDRIRYKSLSDPKQLETEPDL-FIRIT 67
Query: 1234 ---------LQESGIVVLNNEQGFSAENIRALCDVGNSTKK--------GSSAGYIGRKG 1276
+++SGI + AE I L + NS K G+ IG+ G
Sbjct: 68 PKPEQKVLEIRDSGIGMTK------AELINNLGTIANSGTKAFMEALSAGADVSMIGQFG 121
Query: 1277 IGFKSVFRVTDAPEIHS 1293
+GF S+F V D ++ S
Sbjct: 122 VGFYSLFLVADRVQVIS 138
>pdb|4GQT|A Chain A, N-Terminal Domain Of C. Elegans Hsp90
pdb|4GQT|B Chain B, N-Terminal Domain Of C. Elegans Hsp90
Length = 227
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 30/127 (23%)
Query: 1188 HARLGRALHCLSQELYSQDSHFLLELVQNADD------------------------NIYP 1223
A + + + + YS +L EL+ NA D I P
Sbjct: 14 QAEIAQLMSLIINTFYSNKEIYLRELISNASDALDKIRYQALTEPSELDTGKELFIKITP 73
Query: 1224 ENVEPTLTFILQESGIV---VLNNEQGFSAENIRALCDVGNSTKKGSSAGYIGRKGIGFK 1280
E TLT + G+ ++NN + +A + + + G+ IG+ G+GF
Sbjct: 74 NKEEKTLTIMDTGIGMTKADLVNNLGTIAKSGTKAFME---ALQAGADISMIGQFGVGFY 130
Query: 1281 SVFRVTD 1287
S F V D
Sbjct: 131 SAFLVAD 137
>pdb|2XJG|A Chain A, Structure Of Hsp90 With Small Molecule Inhibitor Bound
pdb|2XHX|A Chain A, Structure Of Hsp90 With Small Molecule Inhibitor Bound
Length = 249
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 59/150 (39%), Gaps = 36/150 (24%)
Query: 1171 GLGPNISNMESNMLKKQ------HARLGRALHCLSQELYSQDSHFLLELVQNADD----- 1219
GL P S+M+ M +++ A + + + + YS FL EL+ N+ D
Sbjct: 13 GLVPRGSHMDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKI 72
Query: 1220 -------------------NIYPENVEPTLTFILQESGIV---VLNNEQGFSAENIRALC 1257
N+ P + TLT + G+ ++NN + +A
Sbjct: 73 RYETLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFM 132
Query: 1258 DVGNSTKKGSSAGYIGRKGIGFKSVFRVTD 1287
+ + + G+ IG+ G+GF S + V +
Sbjct: 133 E---ALQAGADISMIGQFGVGFYSAYLVAE 159
>pdb|3FT5|A Chain A, Structure Of Hsp90 Bound With A Novel Fragment
pdb|3FT8|A Chain A, Structure Of Hsp90 Bound With A Noval Fragment.
pdb|3HYY|A Chain A, Crystal Structure Of Hsp90 With Fragment 37-D04
pdb|3HYZ|A Chain A, Crystal Structure Of Hsp90 With Fragment 42-C03
pdb|3HYZ|B Chain B, Crystal Structure Of Hsp90 With Fragment 42-C03
pdb|3HZ1|A Chain A, Crystal Structure Of Hsp90 With Fragments 37-D04 And 42-C03
pdb|3HZ5|A Chain A, Crystal Structure Of Hsp90 With Fragment Z064
pdb|2XAB|A Chain A, Structure Of Hsp90 With An Inhibitor Bound
pdb|2XAB|B Chain B, Structure Of Hsp90 With An Inhibitor Bound
pdb|2XJX|A Chain A, Structre Of Hsp90 With Small Molecule Inhibitor Bound
pdb|2XDK|A Chain A, Structure Of Hsp90 With Small Molecule Inhibitor Bound
pdb|2XDL|A Chain A, Structure Of Hsp90 With Small Molecule Inhibitor Bound
pdb|2XDS|A Chain A, Structre Of Hsp90 With Small Molecule Inhibitor Bound
pdb|2XDX|A Chain A, Structre Of Hsp90 With Small Molecule Inhibitor Bound
pdb|2XHR|A Chain A, Structure Of Hsp90 With Small Molecule Inhibitor Bound
pdb|2XHT|A Chain A, Structure Of Hsp90 With Small Molecule Inhibitor Bound
pdb|2XK2|A Chain A, Structre Of Hsp90 With Small Molecule Inhibitor Bound
Length = 249
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 59/150 (39%), Gaps = 36/150 (24%)
Query: 1171 GLGPNISNMESNMLKKQ------HARLGRALHCLSQELYSQDSHFLLELVQNADD----- 1219
GL P S+M+ M +++ A + + + + YS FL EL+ N+ D
Sbjct: 13 GLVPRGSHMDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKI 72
Query: 1220 -------------------NIYPENVEPTLTFILQESGIV---VLNNEQGFSAENIRALC 1257
N+ P + TLT + G+ ++NN + +A
Sbjct: 73 RYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFM 132
Query: 1258 DVGNSTKKGSSAGYIGRKGIGFKSVFRVTD 1287
+ + + G+ IG+ G+GF S + V +
Sbjct: 133 E---ALQAGADISMIGQFGVGFYSAYLVAE 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,983,998
Number of Sequences: 62578
Number of extensions: 2256074
Number of successful extensions: 4705
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 4658
Number of HSP's gapped (non-prelim): 48
length of query: 2109
length of database: 14,973,337
effective HSP length: 114
effective length of query: 1995
effective length of database: 7,839,445
effective search space: 15639692775
effective search space used: 15639692775
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)