Query 000132
Match_columns 2109
No_of_seqs 191 out of 235
Neff 3.8
Searched_HMMs 46136
Date Thu Mar 28 19:54:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000132.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000132hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14083 HSP90 family protein; 99.5 2.3E-14 5E-19 180.0 11.3 161 1189-1368 7-188 (601)
2 PRK05218 heat shock protein 90 99.2 8.5E-11 1.8E-15 149.0 12.3 106 1189-1294 10-141 (613)
3 PTZ00272 heat shock protein 83 99.2 1.2E-10 2.7E-15 148.6 12.1 158 1189-1367 9-198 (701)
4 PTZ00130 heat shock protein 90 99.0 1.2E-09 2.6E-14 140.4 11.9 161 1188-1367 71-263 (814)
5 COG0326 HtpG Molecular chapero 98.9 4.3E-09 9.3E-14 131.8 8.8 107 1189-1295 11-142 (623)
6 PF13589 HATPase_c_3: Histidin 98.5 1.1E-08 2.4E-13 107.3 -1.9 94 1203-1302 1-105 (137)
7 KOG0020 Endoplasmic reticulum 97.8 3.9E-05 8.6E-10 93.5 7.0 106 1189-1294 79-213 (785)
8 KOG0019 Molecular chaperone (H 97.8 8.7E-05 1.9E-09 93.2 10.0 105 1190-1294 42-169 (656)
9 PF12449 DUF3684: Protein of u 97.3 0.013 2.7E-07 79.0 21.1 503 1456-2092 207-762 (1093)
10 TIGR00585 mutl DNA mismatch re 96.2 0.0031 6.7E-08 75.2 3.6 90 1199-1294 16-113 (312)
11 PF02518 HATPase_c: Histidine 94.9 0.0047 1E-07 61.7 -1.3 78 1208-1290 8-89 (111)
12 PRK04184 DNA topoisomerase VI 93.8 0.17 3.7E-06 65.1 8.7 95 1207-1301 38-151 (535)
13 KOG1924 RhoA GTPase effector D 91.9 0.37 8E-06 63.1 7.7 26 515-540 980-1006(1102)
14 KOG1924 RhoA GTPase effector D 91.7 0.32 6.9E-06 63.6 6.8 32 634-670 954-985 (1102)
15 PF12449 DUF3684: Protein of u 91.3 4.2 9.2E-05 56.2 16.8 269 1672-2064 548-830 (1093)
16 TIGR01052 top6b DNA topoisomer 90.7 0.18 3.9E-06 64.3 3.5 86 1208-1293 31-127 (488)
17 smart00387 HATPase_c Histidine 89.7 0.54 1.2E-05 44.6 4.9 76 1208-1288 8-87 (111)
18 PRK00095 mutL DNA mismatch rep 89.7 0.42 9E-06 62.7 5.5 97 1199-1301 16-126 (617)
19 KOG2236 Uncharacterized conser 89.4 1.4 3.1E-05 55.5 9.4 6 59-64 424-429 (483)
20 KOG2199 Signal transducing ada 85.5 1.7 3.7E-05 54.0 6.9 11 77-87 421-431 (462)
21 cd00075 HATPase_c Histidine ki 84.8 1.1 2.4E-05 41.8 3.9 76 1208-1288 3-82 (103)
22 PF13388 DUF4106: Protein of u 83.8 1.5 3.2E-05 52.6 5.1 13 273-285 355-367 (422)
23 PRK14868 DNA topoisomerase VI 82.3 3.9 8.4E-05 55.0 8.6 81 1208-1288 49-134 (795)
24 KOG2199 Signal transducing ada 80.3 2.5 5.5E-05 52.6 5.6 25 75-100 401-425 (462)
25 KOG0162 Myosin class I heavy c 78.7 9.7 0.00021 50.6 10.0 15 36-50 951-965 (1106)
26 PRK05644 gyrB DNA gyrase subun 75.3 16 0.00034 49.0 11.0 95 1207-1302 39-149 (638)
27 PHA03247 large tegument protei 67.5 34 0.00073 51.4 11.8 13 11-23 2848-2860(3151)
28 PRK14867 DNA topoisomerase VI 66.9 4.1 8.8E-05 54.2 3.0 81 1208-1288 39-125 (659)
29 PRK05559 DNA topoisomerase IV 64.5 8.7 0.00019 51.1 5.4 95 1207-1302 39-149 (631)
30 KOG4849 mRNA cleavage factor I 63.9 24 0.00052 43.8 8.2 49 292-340 377-432 (498)
31 PRK15053 dpiB sensor histidine 60.7 5.8 0.00013 50.2 2.8 76 1209-1288 436-516 (545)
32 TIGR01055 parE_Gneg DNA topois 60.1 15 0.00033 49.0 6.3 95 1207-1302 32-142 (625)
33 KOG0307 Vesicle coat complex C 59.6 1.3E+02 0.0029 42.4 14.7 66 131-196 940-1007(1049)
34 TIGR01059 gyrB DNA gyrase, B s 57.4 45 0.00098 44.9 10.0 95 1207-1302 32-142 (654)
35 COG0323 MutL DNA mismatch repa 54.9 26 0.00056 47.0 7.2 99 1199-1302 17-128 (638)
36 COG5178 PRP8 U5 snRNP spliceos 54.0 11 0.00024 51.9 3.5 80 693-774 840-931 (2365)
37 PF06682 DUF1183: Protein of u 52.9 16 0.00035 45.2 4.5 15 25-39 210-224 (318)
38 PRK04069 serine-protein kinase 51.4 14 0.00031 40.6 3.5 89 1210-1301 47-140 (161)
39 PRK14939 gyrB DNA gyrase subun 50.7 26 0.00055 47.9 6.2 94 1207-1302 39-149 (756)
40 smart00433 TOP2c Topoisomerase 47.6 28 0.0006 46.3 5.8 94 1208-1302 4-113 (594)
41 PF11459 DUF2893: Protein of u 47.1 11 0.00025 37.4 1.7 61 1005-1066 1-62 (69)
42 KOG4368 Predicted RNA binding 47.0 67 0.0014 42.4 8.6 15 285-299 560-574 (757)
43 TIGR02966 phoR_proteo phosphat 45.3 16 0.00035 42.1 2.9 76 1209-1288 233-312 (333)
44 PRK11006 phoR phosphate regulo 45.3 22 0.00048 44.0 4.2 76 1209-1288 321-400 (430)
45 KOG1984 Vesicle coat complex C 45.2 70 0.0015 44.1 8.7 21 669-693 364-385 (1007)
46 PRK11086 sensory histidine kin 45.1 16 0.00035 45.8 3.1 72 1209-1288 437-512 (542)
47 COG0642 BaeS Signal transducti 44.4 27 0.00058 39.4 4.3 69 1208-1285 231-303 (336)
48 PF08549 SWI-SNF_Ssr4: Fungal 41.0 28 0.0006 46.6 4.2 85 234-339 317-410 (669)
49 PRK03660 anti-sigma F factor; 39.7 49 0.0011 35.1 5.2 77 1210-1293 44-124 (146)
50 TIGR01058 parE_Gpos DNA topois 39.5 38 0.00081 45.6 5.2 95 1207-1302 36-146 (637)
51 PRK10549 signal transduction h 39.1 23 0.0005 43.7 3.1 75 1210-1288 357-435 (466)
52 TIGR02916 PEP_his_kin putative 37.8 25 0.00054 46.7 3.3 70 1209-1288 583-657 (679)
53 KOG1985 Vesicle coat complex C 37.7 2.1E+02 0.0046 39.7 11.2 18 1156-1173 825-842 (887)
54 COG3290 CitA Signal transducti 37.6 33 0.00072 45.0 4.2 62 1212-1279 434-499 (537)
55 TIGR01925 spIIAB anti-sigma F 37.4 42 0.00092 35.3 4.3 77 1210-1293 44-124 (137)
56 KOG1830 Wiskott Aldrich syndro 37.2 1.8E+02 0.0039 37.5 10.0 152 1-155 267-462 (518)
57 TIGR01386 cztS_silS_copS heavy 35.8 45 0.00097 40.9 4.7 76 1209-1288 357-436 (457)
58 KOG4849 mRNA cleavage factor I 35.1 2.9E+02 0.0064 35.0 11.0 19 211-229 413-431 (498)
59 PRK10364 sensor protein ZraS; 33.5 44 0.00095 41.8 4.2 69 1210-1288 353-425 (457)
60 KOG2415 Electron transfer flav 33.3 19 0.0004 46.0 1.0 27 569-595 393-426 (621)
61 KOG0905 Phosphoinositide 3-kin 33.1 1.5E+02 0.0033 42.3 9.0 23 513-535 338-360 (1639)
62 PRK15319 AIDA autotransporter- 32.5 34 0.00073 50.1 3.3 8 433-440 1945-1952(2039)
63 TIGR02938 nifL_nitrog nitrogen 30.5 47 0.001 40.7 3.7 75 1209-1287 391-470 (494)
64 PRK11100 sensory histidine kin 29.5 39 0.00084 41.5 2.8 75 1209-1288 372-450 (475)
65 PRK10755 sensor protein BasS/P 28.0 44 0.00096 40.1 2.9 72 1209-1288 251-326 (356)
66 COG4191 Signal transduction hi 27.6 47 0.001 44.1 3.2 57 1209-1266 501-561 (603)
67 KOG0608 Warts/lats-like serine 27.1 2.1E+02 0.0045 39.0 8.5 109 7-133 223-342 (1034)
68 PRK10604 sensor protein RstB; 26.1 67 0.0015 40.3 4.1 58 1230-1288 341-400 (433)
69 PHA03247 large tegument protei 25.6 4.3E+02 0.0093 41.2 11.7 7 634-640 3093-3099(3151)
70 PRK09470 cpxA two-component se 23.2 88 0.0019 38.6 4.3 75 1209-1287 357-433 (461)
71 KOG1985 Vesicle coat complex C 22.7 3.6E+02 0.0079 37.6 9.7 12 1880-1891 869-880 (887)
72 KOG1076 Translation initiation 22.4 2.6E+02 0.0056 38.3 8.2 55 383-437 3-62 (843)
73 TIGR01628 PABP-1234 polyadenyl 22.2 2E+02 0.0043 37.8 7.3 116 1-138 394-509 (562)
74 KOG2045 5'-3' exonuclease XRN1 21.6 1.5E+02 0.0033 41.3 6.0 104 52-166 1320-1440(1493)
75 PRK11073 glnL nitrogen regulat 21.6 70 0.0015 38.1 2.9 42 1239-1287 283-324 (348)
76 TIGR01924 rsbW_low_gc serine-p 21.5 80 0.0017 35.0 3.2 88 1210-1300 47-139 (159)
77 KOG1923 Rac1 GTPase effector F 21.0 3.4E+02 0.0073 37.6 8.8 15 532-546 691-705 (830)
78 PRK10337 sensor protein QseC; 20.5 66 0.0014 39.8 2.5 71 1211-1288 358-428 (449)
79 KOG2675 Adenylate cyclase-asso 20.3 79 0.0017 40.8 3.0 11 193-203 365-375 (480)
80 KOG0917 Uncharacterized conser 20.2 8.8E+02 0.019 30.3 11.2 15 154-168 309-323 (338)
No 1
>PRK14083 HSP90 family protein; Provisional
Probab=99.52 E-value=2.3e-14 Score=180.00 Aligned_cols=161 Identities=24% Similarity=0.355 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHhhhcCCCCcchhhcccccccCCCC-----CCCCCcEEEEE---eCCeEEEEeCCCCCCHhhHHH-HHhc
Q 000132 1189 ARLGRALHCLSQELYSQDSHFLLELVQNADDNIYP-----ENVEPTLTFIL---QESGIVVLNNEQGFSAENIRA-LCDV 1259 (2109)
Q Consensus 1189 ~~lgrAL~~LS~eLYSsdtHFL~ELIQNADDN~Y~-----e~v~PtLsF~L---~dd~LlV~NNE~GFTeeDIeA-ICsI 1259 (2109)
+.+.+.++.|+..||++...||.||||||-||.-. .+..|.+.+.+ ....|.|..||.|+|.+++.. ++.|
T Consensus 7 ae~~~ll~ll~~~LYs~~~iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~d~~~~~l~I~DnGiGmt~eel~~~l~~i 86 (601)
T PRK14083 7 VDLRGVIDLLSRHLYSSPRVYVRELLQNAVDAITARRALDPTAPGRIRIELTDAGGGTLIVEDNGIGLTEEEVHEFLATI 86 (601)
T ss_pred HhHHHHHHHHHHhhcCCcHHHHHHHHHhHHHHHHhhhccCCCCCceEEEEEccCCCcEEEEEeCCCCCCHHHHHHHHhhh
Confidence 46778899999999999999999999999998421 23346788877 235589999999999999997 6999
Q ss_pred cCccccCC-----CCCcccccccccceeccccCccEEecCCe----EEEecCCCCccceecCcccCCCchhhhhhcccCC
Q 000132 1260 GNSTKKGS-----SAGYIGRKGIGFKSVFRVTDAPEIHSNGF----HVKFDTSEGQIGFVLPTLVPPFNIDMFCRLLSKD 1330 (2109)
Q Consensus 1260 G~STKkg~-----~~gyIGeKGIGFKSVF~VTD~P~I~SGGY----sFkFD~~d~~LG~IlP~wv~P~~~~~isrils~~ 1330 (2109)
|.|+|++. ..+.||+|||||.|||.|+|.|.|.|..+ .|.+.....+ .|-+ .+.
T Consensus 87 g~S~k~~~~~~~~~~~~IG~FGIGf~S~F~vad~v~V~Tr~~~~~~~~~W~~~~~g-~y~i----~~~------------ 149 (601)
T PRK14083 87 GRSSKRDENLGFARNDFLGQFGIGLLSCFLVADEIVVVSRSAKDGPAVEWRGKADG-TYSV----RKL------------ 149 (601)
T ss_pred ccchhhhhhhcccccccccccccceEEEEEecCEEEEEeccCCCCceEEEEECCCC-ceEE----EeC------------
Confidence 99999774 24689999999999999999999998543 3333321110 1111 100
Q ss_pred CcccccCCCceEEEecCccccch---hhhHhHHHHHhhhcC
Q 000132 1331 PVQLESKCWNTCIRLPFRTKFSE---GIAMNNIVDMFSDLH 1368 (2109)
Q Consensus 1331 ~~~~~~~~~~T~IrLPLRse~S~---~~~v~sI~e~F~~L~ 1368 (2109)
.......||.|+|.++.+..+ ...+.+|...+.++-
T Consensus 150 --~~~~~~~GT~I~L~l~~d~~~~~~~~~i~~li~~ys~~i 188 (601)
T PRK14083 150 --ETERAEPGTTVYLRPRPDAEEWLERETVEELAKKYGSLL 188 (601)
T ss_pred --CCCCCCCCCEEEEEecCchhhhccHHHHHHHHHHHhccC
Confidence 001234689999999875322 334566666666543
No 2
>PRK05218 heat shock protein 90; Provisional
Probab=99.18 E-value=8.5e-11 Score=149.05 Aligned_cols=106 Identities=27% Similarity=0.445 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHhhhcCCCCcchhhcccccccCCC-------------CCCCCCcEEEEEeC--CeEEEEeCCCCCCHhhH
Q 000132 1189 ARLGRALHCLSQELYSQDSHFLLELVQNADDNIY-------------PENVEPTLTFILQE--SGIVVLNNEQGFSAENI 1253 (2109)
Q Consensus 1189 ~~lgrAL~~LS~eLYSsdtHFL~ELIQNADDN~Y-------------~e~v~PtLsF~L~d--d~LlV~NNE~GFTeeDI 1253 (2109)
+.+.+.+..|+..||++..-||.||||||-||.. .....+.+.+.+.+ ..|.|..||.|.|.+|+
T Consensus 10 ~e~~~ll~ll~~~LYs~~~v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnG~GMt~eel 89 (613)
T PRK05218 10 AEVKQLLHLMIHSLYSNKEIFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISFDKEARTLTISDNGIGMTREEV 89 (613)
T ss_pred HhHHHHHHHHhhhhcCCchHHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEEcCCCCeEEEEECCCCCCHHHH
Confidence 3678889999999999999999999999999931 11223567766653 35899999999999998
Q ss_pred H-HHHhccCccccC----------CCCCcccccccccceeccccCccEEecC
Q 000132 1254 R-ALCDVGNSTKKG----------SSAGYIGRKGIGFKSVFRVTDAPEIHSN 1294 (2109)
Q Consensus 1254 e-AICsIG~STKkg----------~~~gyIGeKGIGFKSVF~VTD~P~I~SG 1294 (2109)
+ ++..+|.|.++. .....||.|||||.|+|.|+|.+.|.|.
T Consensus 90 ~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S~f~va~~v~V~Sr 141 (613)
T PRK05218 90 IENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYSAFMVADKVTVITR 141 (613)
T ss_pred HHHHHhhccccchhHHHHhhcccccccccccccCcCchhhhhccCEEEEEEc
Confidence 8 788999985321 1236799999999999999999999883
No 3
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=99.15 E-value=1.2e-10 Score=148.65 Aligned_cols=158 Identities=23% Similarity=0.377 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHhhhcCCCCcchhhcccccccCC----CC----C---CCCCcEEEEEe----CCeEEEEeCCCCCCHhh-
Q 000132 1189 ARLGRALHCLSQELYSQDSHFLLELVQNADDNI----YP----E---NVEPTLTFILQ----ESGIVVLNNEQGFSAEN- 1252 (2109)
Q Consensus 1189 ~~lgrAL~~LS~eLYSsdtHFL~ELIQNADDN~----Y~----e---~v~PtLsF~L~----dd~LlV~NNE~GFTeeD- 1252 (2109)
+.+.+-+..|+..||+...-||.||||||-||. |. . +..+.+.+.+. ...|.|..||.|.|++|
T Consensus 9 ae~~~Ll~lli~slYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~L~I~DnGiGMt~edl 88 (701)
T PTZ00272 9 AEINQLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENKTLTVEDNGIGMTKADL 88 (701)
T ss_pred HHHHHHHHHHHhcccCCccHhHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEcCCCCEEEEEECCCCCCHHHH
Confidence 467788999999999999999999999999983 11 0 11234455553 24589999999999999
Q ss_pred HHHHHhccCcccc--------CCCCCcccccccccceeccccCccEEecCC-----eEEEecCCCCccceecCcccCCCc
Q 000132 1253 IRALCDVGNSTKK--------GSSAGYIGRKGIGFKSVFRVTDAPEIHSNG-----FHVKFDTSEGQIGFVLPTLVPPFN 1319 (2109)
Q Consensus 1253 IeAICsIG~STKk--------g~~~gyIGeKGIGFKSVF~VTD~P~I~SGG-----YsFkFD~~d~~LG~IlP~wv~P~~ 1319 (2109)
++.+-.||+|.++ +.....||+|||||-|+|+|||.|.|.|.. |.|.-+.+ -.|.+ .+.
T Consensus 89 ~~~LgtIa~SGt~~f~~~~~~~~~~~~iGqFGvGfyS~Fmvad~V~V~Srs~~~~~~~W~s~~~---g~y~i----~~~- 160 (701)
T PTZ00272 89 VNNLGTIARSGTKAFMEALEAGGDMSMIGQFGVGFYSAYLVADRVTVTSKNNSDESYVWESSAG---GTFTI----TST- 160 (701)
T ss_pred HHHhhhhhhcchHHHHHHhhccCCccccCCCCcceEEEEEeccEEEEEEecCCCceEEEEECCC---CcEEE----EeC-
Confidence 7888899997443 112358999999999999999999999873 44443321 01111 000
Q ss_pred hhhhhhcccCCCcccccCCCceEEEecCccccc---hhhhHhHHHHHhhhc
Q 000132 1320 IDMFCRLLSKDPVQLESKCWNTCIRLPFRTKFS---EGIAMNNIVDMFSDL 1367 (2109)
Q Consensus 1320 ~~~isrils~~~~~~~~~~~~T~IrLPLRse~S---~~~~v~sI~e~F~~L 1367 (2109)
+ ......||+|+|.|+.+.. +...+.+|....+++
T Consensus 161 -----------~--~~~~~~GT~I~L~Lk~d~~ef~~~~~i~~li~kYs~f 198 (701)
T PTZ00272 161 -----------P--ESDMKRGTRITLHLKEDQMEYLEPRRLKELIKKHSEF 198 (701)
T ss_pred -----------C--CCCCCCCCEEEEEECCchHHhccHHHHHHHHHHhccc
Confidence 0 0122468999999987632 234566677666653
No 4
>PTZ00130 heat shock protein 90; Provisional
Probab=99.00 E-value=1.2e-09 Score=140.42 Aligned_cols=161 Identities=20% Similarity=0.339 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHhhhcCCCCcchhhcccccccCCC-------------CCCCCCcEEEEEe--CCeEEEEeCCCCCCHhh
Q 000132 1188 HARLGRALHCLSQELYSQDSHFLLELVQNADDNIY-------------PENVEPTLTFILQ--ESGIVVLNNEQGFSAEN 1252 (2109)
Q Consensus 1188 ~~~lgrAL~~LS~eLYSsdtHFL~ELIQNADDN~Y-------------~e~v~PtLsF~L~--dd~LlV~NNE~GFTeeD 1252 (2109)
++.+.+-+..++..||++..-||.||||||-||.- ..+..+.+.+... .+.|.|..||.|.|+++
T Consensus 71 QaEv~~Lldiii~sLYS~keIFLRELISNAsDAldKlr~~~lt~~~~~~~~~~~~I~I~~D~~~~tLtI~DnGIGMT~eE 150 (814)
T PTZ00130 71 QTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTGIGMTKED 150 (814)
T ss_pred HHHHHHHHHHHhhccCCCCCceeehHhhhHHHHHHHHHHHHcCCchhcCCCCCceEEEEECCCCCEEEEEECCCCCCHHH
Confidence 34678889999999999999999999999999841 1111234444443 44699999999999999
Q ss_pred -HHHHHhccCccccC---------CCCCcccccccccceeccccCccEEecCCeEEEecCCCCccceecCcccCC----C
Q 000132 1253 -IRALCDVGNSTKKG---------SSAGYIGRKGIGFKSVFRVTDAPEIHSNGFHVKFDTSEGQIGFVLPTLVPP----F 1318 (2109)
Q Consensus 1253 -IeAICsIG~STKkg---------~~~gyIGeKGIGFKSVF~VTD~P~I~SGGYsFkFD~~d~~LG~IlP~wv~P----~ 1318 (2109)
++.+-.||+|.++. .....||+|||||=|+|+|||.|.|.|..+. .-+++ |..- +
T Consensus 151 l~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVAdkV~V~Trs~~--------~~~~~---W~s~g~g~y 219 (814)
T PTZ00130 151 LINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNN--------DEQYI---WESTADAKF 219 (814)
T ss_pred HHHHhhhhcccccHHHHHHhhccCCCcccccccccchhheeeecCEEEEEEcCCC--------CceEE---EEECCCCcE
Confidence 56777888875322 1236899999999999999999999986421 01221 3211 1
Q ss_pred chhhhhhcccCCCcccccCCCceEEEecCccccch---hhhHhHHHHHhhhc
Q 000132 1319 NIDMFCRLLSKDPVQLESKCWNTCIRLPFRTKFSE---GIAMNNIVDMFSDL 1367 (2109)
Q Consensus 1319 ~~~~isrils~~~~~~~~~~~~T~IrLPLRse~S~---~~~v~sI~e~F~~L 1367 (2109)
.+... + .......||.|+|.|+.+..+ ...+..|....+++
T Consensus 220 ~I~e~-------~-~~~~~~rGT~I~LhLked~~efl~~~~ik~likkYS~f 263 (814)
T PTZ00130 220 TIYKD-------P-RGSTLKRGTRISLHLKEDATNLMNDKKLVDLISKYSQF 263 (814)
T ss_pred EEEEC-------C-CCCCCCCCcEEEEEECCchhhhccHHHHHHHHHHhhcc
Confidence 11000 0 001234699999999875322 34566777777664
No 5
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=4.3e-09 Score=131.81 Aligned_cols=107 Identities=26% Similarity=0.454 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHhhhcCCCCcchhhcccccccCC----C---------CCCCCCcEEEEEeC--CeEEEEeCCCCCCHhhH
Q 000132 1189 ARLGRALHCLSQELYSQDSHFLLELVQNADDNI----Y---------PENVEPTLTFILQE--SGIVVLNNEQGFSAENI 1253 (2109)
Q Consensus 1189 ~~lgrAL~~LS~eLYSsdtHFL~ELIQNADDN~----Y---------~e~v~PtLsF~L~d--d~LlV~NNE~GFTeeDI 1253 (2109)
+.+.+.+..++.-|||...=||.||||||-||. | ..+..+.+++...+ ..|.|..||.|-|.+++
T Consensus 11 ~ev~~ll~lmihSlYSnKeIFLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk~~kTLtI~DNGIGMT~~Ev 90 (623)
T COG0326 11 AEVKQLLDLMIHSLYSNKEIFLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDKDNKTLTISDNGIGMTKDEV 90 (623)
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEcccCCEEEEEeCCCCCCHHHH
Confidence 367888999999999999999999999999972 1 11123555555544 56999999999999996
Q ss_pred H-HHHhccCccccCC----C-----CCcccccccccceeccccCccEEecCC
Q 000132 1254 R-ALCDVGNSTKKGS----S-----AGYIGRKGIGFKSVFRVTDAPEIHSNG 1295 (2109)
Q Consensus 1254 e-AICsIG~STKkg~----~-----~gyIGeKGIGFKSVF~VTD~P~I~SGG 1295 (2109)
. .|--||+|.++.- + ..-||.|||||=|-|+|||+|.+.|..
T Consensus 91 ~~~LgTIAkSgT~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVAdkV~V~T~~ 142 (623)
T COG0326 91 IENLGTIAKSGTKEFLESLSEDQKDSDLIGQFGVGFYSAFMVADKVTVITRS 142 (623)
T ss_pred HHHHHHhhhccHHHHHHHhccccccccccccccchhhheeeeeeeEEEEecc
Confidence 4 5777888877631 1 244999999999999999999998853
No 6
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=98.51 E-value=1.1e-08 Score=107.31 Aligned_cols=94 Identities=32% Similarity=0.478 Sum_probs=71.5
Q ss_pred cCCCCcchhhcccccccCCCCCCCCCcEEEEEeC-----CeEEEEeCCCCCCHhhHHHHHhccCccccCC-CCCcccccc
Q 000132 1203 YSQDSHFLLELVQNADDNIYPENVEPTLTFILQE-----SGIVVLNNEQGFSAENIRALCDVGNSTKKGS-SAGYIGRKG 1276 (2109)
Q Consensus 1203 YSsdtHFL~ELIQNADDN~Y~e~v~PtLsF~L~d-----d~LlV~NNE~GFTeeDIeAICsIG~STKkg~-~~gyIGeKG 1276 (2109)
|+- .+.|.||||||-||... .+.+.+.. ..|.|..||.|++.++++..+.+|.|+|+.. ....||+||
T Consensus 1 y~~-~~al~ElI~Ns~DA~a~-----~I~I~i~~~~~~~~~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~~~~~~~G~~G 74 (137)
T PF13589_consen 1 YSP-EDALRELIDNSIDAGAT-----NIKISIDEDKKGERYIVIEDNGEGMSREDLESFFRIGRSSKKSEKDRQSIGRFG 74 (137)
T ss_dssp -SC-THHHHHHHHHHHHHHHH-----HEEEEEEEETTTTTEEEEEESSS---HHHHHHHTTCHHTHHHHHHHGGGGGGGT
T ss_pred CcH-HHHHHHHHHHHHHccCC-----EEEEEEEcCCCCCcEEEEEECCcCCCHHHHHHhccccCCCCCchhhhhcCCCcc
Confidence 444 78999999999998642 25554433 4899999999999999999999999999841 135799999
Q ss_pred cc-cceeccccCccEEecC----CeEEEecC
Q 000132 1277 IG-FKSVFRVTDAPEIHSN----GFHVKFDT 1302 (2109)
Q Consensus 1277 IG-FKSVF~VTD~P~I~SG----GYsFkFD~ 1302 (2109)
|| ..|+|.+++.+.|.|. .+.+.|+.
T Consensus 75 ~G~k~A~~~~~~~~~v~S~~~~~~~~~~~~~ 105 (137)
T PF13589_consen 75 IGLKLAIFSLGDRVEVISKTNGESFTYTIDY 105 (137)
T ss_dssp SGCGGGGGGTEEEEEEEEESTTSSSEEEEEE
T ss_pred eEHHHHHHHhcCEEEEEEEECCCCcEEEEEE
Confidence 99 6689999999999875 45555554
No 7
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=3.9e-05 Score=93.47 Aligned_cols=106 Identities=25% Similarity=0.418 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHhhhcCCCCcchhhcccccccCCC--------CC---CCCCcEEEEEeCC----eEEEEeCCCCCCHhh-
Q 000132 1189 ARLGRALHCLSQELYSQDSHFLLELVQNADDNIY--------PE---NVEPTLTFILQES----GIVVLNNEQGFSAEN- 1252 (2109)
Q Consensus 1189 ~~lgrAL~~LS~eLYSsdtHFL~ELIQNADDN~Y--------~e---~v~PtLsF~L~dd----~LlV~NNE~GFTeeD- 1252 (2109)
+.+.|..+.+..-||....-|+.|||-||-||.- +. +..+.+++.+.-+ -|-|..-|.|.|.+|
T Consensus 79 aEVnRmMklIINSLY~NKeIFLRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~Dke~klLhi~DtGiGMT~edL 158 (785)
T KOG0020|consen 79 AEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLALTDKDVLGETEELEIKIKADKEKKLLHITDTGIGMTREDL 158 (785)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEeechhhCeeeEecccCCccHHHH
Confidence 3577788888899999999999999999999831 11 2245666666532 367899999999998
Q ss_pred HHHHHhccCcccc------CC-------CCCcccccccccceeccccCccEEecC
Q 000132 1253 IRALCDVGNSTKK------GS-------SAGYIGRKGIGFKSVFRVTDAPEIHSN 1294 (2109)
Q Consensus 1253 IeAICsIG~STKk------g~-------~~gyIGeKGIGFKSVF~VTD~P~I~SG 1294 (2109)
|..+-.|++|.-. .+ ...-||.||+||=|-|.|+|.+.+.|-
T Consensus 159 i~NLGTIAkSGTs~Fl~Km~~~~~~~~~~~dlIGQFGVGFYsAfLVAD~vvVtsK 213 (785)
T KOG0020|consen 159 IKNLGTIAKSGTSEFLEKMQDSGDSEGLMNDLIGQFGVGFYSAFLVADRVVVTSK 213 (785)
T ss_pred HHhhhhhhcccHHHHHHHhhccccchhhHHHHHHhcchhhhhhhhhcceEEEEec
Confidence 4555555555322 11 124699999999999999999999875
No 8
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=8.7e-05 Score=93.15 Aligned_cols=105 Identities=28% Similarity=0.493 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhhhcCCCCcchhhcccccccCC----CCC-----CCCCcEEEEEeCC----eEEEEeCCCCCCHhh-HHH
Q 000132 1190 RLGRALHCLSQELYSQDSHFLLELVQNADDNI----YPE-----NVEPTLTFILQES----GIVVLNNEQGFSAEN-IRA 1255 (2109)
Q Consensus 1190 ~lgrAL~~LS~eLYSsdtHFL~ELIQNADDN~----Y~e-----~v~PtLsF~L~dd----~LlV~NNE~GFTeeD-IeA 1255 (2109)
.+.+-....+..+|+...-|+.|||-||-||. |.. ...|.+.+.+..+ .|.+-..|.|-|.+| +..
T Consensus 42 E~~qLm~lii~s~YS~kEvFlRELISNaSDAldKiRy~~lt~~~~~~~~l~I~i~~nk~~~tlti~DtGIGMTk~dLvnn 121 (656)
T KOG0019|consen 42 ETNQLMDIVAKSLYSHKEVFLRELISNASDALEKLRYLELKGDEKALPELEIRIITNKDKRTITIQDTGIGMTKEDLVNN 121 (656)
T ss_pred hHHhHHHHHHHHhhcchHHHHHhhhccccchHHHHHHHhhcCccccccceeEEeccCCCcceEEEEecCCCcCHHHHHhh
Confidence 45556777888999999999999999999982 321 1146778777643 488999999999998 566
Q ss_pred HHhccCcccc---------CCCCCcccccccccceeccccCccEEecC
Q 000132 1256 LCDVGNSTKK---------GSSAGYIGRKGIGFKSVFRVTDAPEIHSN 1294 (2109)
Q Consensus 1256 ICsIG~STKk---------g~~~gyIGeKGIGFKSVF~VTD~P~I~SG 1294 (2109)
+=.|++|..+ +....-||.||+||.|-|.|+|+|.+.+.
T Consensus 122 LGTIAkSGtK~Fmealkea~ad~~~IGQFGvGFYSaylVAdkV~V~tk 169 (656)
T KOG0019|consen 122 LGTIAKSGSKAFLEALKEAEAESNLIGQFGVGFYSAFMVADRVVVTTR 169 (656)
T ss_pred hhhhhhcccHHHHHHHHhcccchhhhhhcccchhhhhhhhheeEEeec
Confidence 7778887654 33345799999999999999999999764
No 9
>PF12449 DUF3684: Protein of unknown function (DUF3684) ; InterPro: IPR022155 This domain family is found in eukaryotes, and is typically between 1072 and 1090 amino acids in length.
Probab=97.29 E-value=0.013 Score=78.99 Aligned_cols=503 Identities=19% Similarity=0.211 Sum_probs=249.7
Q ss_pred CCCEEEEecCc-CCCCceEEec-CcCCCCCccccCCCC----hhhHHHHHHhHHHHHHHHH-HhhcCCC-c------cCC
Q 000132 1456 QQPVFAFLPLR-TYGLKFILQG-DFVLPSSREEVDGNS----PWNQWLLSEFPALFVSAER-SFCDLPC-F------REN 1521 (2109)
Q Consensus 1456 ~q~VFAFLPtr-~tGFpFLIQA-DFiLtSSREdId~dS----~WNq~Lle~Ip~aFV~AV~-~fc~Lp~-l------~~~ 1521 (2109)
+|+||==+||- .||+--||-| -|+.|--||+||..+ .||.-|+..-.-+..-|.. +|.++.. + ...
T Consensus 207 ~GRIFIGFpT~QTTG~~~HisAps~IPTVERESIDlnaR~V~~WN~ElLr~aGil~R~ay~~EM~~i~~~~~~~~~~~~~ 286 (1093)
T PF12449_consen 207 QGRIFIGFPTHQTTGLGAHISAPSFIPTVERESIDLNARYVRTWNIELLRAAGILCRIAYEAEMAEIKSRWKRAQSGGSK 286 (1093)
T ss_pred CceEEEecccccccccceEeccCCcCcccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 67899999996 7999999999 999999999998764 5999998773322222221 1111111 1 001
Q ss_pred CccccccccccccccCccCCcC--------CchHHHHHH----HHhhCceeeecCCCCccccccccccccccc------c
Q 000132 1522 PAKAASVYMSFVPLVGEVHGFF--------SGLPRMILS----KLRMSNCLILEGNNNQWAPPCKVLRGWNDR------A 1583 (2109)
Q Consensus 1522 Pg~a~~~w~~fLP~~~~v~~FF--------~~L~~~I~~----kL~~~piL~ses~~~~~~~P~~vlr~~~~~------~ 1583 (2109)
+......| ++|..-+.-.|| ..|-+.|.+ ..++ +.+.+-+..+ +.|+..+|...+. .
T Consensus 287 ~~~~~~~~--l~~~AlH~~k~FtF~~STPSs~Vgq~iEeaFwtc~k~-~si~vlST~G--V~~s~~VRl~~~~ls~F~~~ 361 (1093)
T PF12449_consen 287 IDKEDIEW--LLPEALHILKFFTFRESTPSSQVGQIIEEAFWTCSKN-ASIEVLSTRG--VLPSHQVRLPSEELSKFVKS 361 (1093)
T ss_pred CCHHHHHH--HHHHHHHHHhhccccCCCchHHHHHHHHHHHHhhccc-CCceeeecCC--ccccceeecCCHHHHHHhcC
Confidence 11111111 222110000111 012222222 2222 2222222221 2344444443332 2
Q ss_pred cCCCchHHHh-------hhccCCcccccccchHHHHHHhCccccChHHHHHHHHhhhcCcccccccCchhHHHHHHHHHH
Q 000132 1584 HSLLPDILLQ-------KHLGLGFLSKDIVLSDSLARALGIEEYGPKILLQIISSLCRTENGLRSMGLSWLASWLNELYT 1656 (2109)
Q Consensus 1584 r~LlpD~lL~-------~lLs~gYldkdi~ls~~L~raLGI~~lsp~~Lv~vl~slir~~s~Lr~~~~~WhSr~a~~L~l 1656 (2109)
-|.+|+.+.+ .+...| +=.+|.+.|- .+.|+-..++.+.++..++=+++.. ..-+.+ .+.....|-.
T Consensus 362 iPvlP~e~~~~a~~fv~~L~~~g-Li~~iTv~DI-~~ELesr~L~~~q~~~flkW~~~~~---~~g~~d-~~~~~~Ll~v 435 (1093)
T PF12449_consen 362 IPVLPDEVVDGAKDFVKKLRDFG-LITDITVDDI-KKELESRALTEEQMVEFLKWWGKKA---ASGELD-PSSRQRLLDV 435 (1093)
T ss_pred CCcCcHHHHhhHHHHHHHHHHcC-CcccccHHHH-HHHHhcCCCCHHHHHHHHHHHHhhc---cccccC-HHHHHHHHHH
Confidence 3667766532 222223 2245555433 3667777777777776664222110 000011 1111222221
Q ss_pred HhhcCCCCCccccCcchhHHhhccCCCeeecCC-CCeeecCCCcEEEeCCCCCCCCCCCCcccccccccccccChhhhcc
Q 000132 1657 ISFHSSGQSSLQSGVETDLIDNLQRIPFIPLSD-GTFSSVDEGTIWLHSDCSVFDGGFGLEAFPNLCAKLRTVSPALLSA 1735 (2109)
Q Consensus 1657 llf~~s~~~s~~~~~~~~l~~eLr~LpLIPLsD-GswvSa~sg~VYfPS~~~g~~ip~~Le~fP~lya~LR~Vdp~a~~~ 1735 (2109)
.+....+. .=.+=.||||++ -+|+.+..- |. ..++|.. +-|..+.
T Consensus 436 AVa~~~~~-------------~~~~~~ii~L~~I~~flnp~~i----P~---~lPlPpt-------------~lP~~~t- 481 (1093)
T PF12449_consen 436 AVATIEDP-------------GGNSGRIIPLSSIKTFLNPNRI----PP---DLPLPPT-------------TLPFAFT- 481 (1093)
T ss_pred Hhcccccc-------------CCCCCceEehhhhhcccccccC----CC---CCCCCCC-------------cCChHhh-
Confidence 22221110 011345777777 335443331 22 1233332 2233334
Q ss_pred cccCcccccccchHHHHHHHHHcCceecchHHHHHhhccccccCccc-cCCChhhHHHH----HHHHhhhccccCCCcch
Q 000132 1736 SAVDKSSLGVISVDNLNRMLLKIGVQQLSAHDIVKVHILPAISDETT-ANGDKNLMADY----LCFVMMHLEYYCPNCHV 1810 (2109)
Q Consensus 1736 s~~n~~~~~~~~a~dr~~Lf~~LGVqe~s~~~VIr~hILp~ys~~~~-~~~~~~~~~~y----L~Fl~l~l~s~~~~~~~ 1810 (2109)
++- ...=|+.+|-.+++.-.=++=.+-+....... ...+...+-.+ |.-|-.. .-++---
T Consensus 482 --k~l----------~~~~L~~lGW~eL~iv~Wl~~L~~~~~~~~~~~~e~dit~s~~fA~qVL~vLSK~---W~~Ls~~ 546 (1093)
T PF12449_consen 482 --KSL----------SANELQSLGWEELSIVPWLRFLISNAGSRGSLPVEQDITKSPKFAEQVLPVLSKN---WDNLSPS 546 (1093)
T ss_pred --ccC----------CHHHHhhcCCeeccHHHHHHHHhcCCcCCCccccccccccChhHHHHHHHHHHhc---ccCCCHH
Confidence 231 12234455999999988766666665433311 11111111122 2222222 1223344
Q ss_pred hhhhHHHHhhhcccccccccccCCCccceEeCCCCCCCcchhhhccccCceEEEeccccccCCCCCcccccchhHHHHHH
Q 000132 1811 EREFIVSELRKKAFVLTNHGFKRPSEIPIHFGKEFGNPVSVNMLIHDIDIKWYEVDITYLKHPAKESLSCGLVKWRKFFK 1890 (2109)
Q Consensus 1811 er~~i~s~lr~~a~~ltn~g~k~P~~~~Iyf~~e~gn~~~p~kLl~~~~v~w~el~~~YL~~~~p~~~~~~~~sWr~wl~ 1890 (2109)
.|..|++-|+.++++=|+.|+|+|.| -|||.= +|.+.|.|- ..+ .--=++||.
T Consensus 547 sk~~v~~lL~~~t~iPTk~GMkkP~E--aYF~sV--------~LFdDLPvv---------~~~--------~gvkEKfL~ 599 (1093)
T PF12449_consen 547 SKQTVVSLLQPKTCIPTKLGMKKPSE--AYFPSV--------KLFDDLPVV---------TGC--------NGVKEKFLV 599 (1093)
T ss_pred HHHHHHHHhccCcccccccccCCchh--hhcchh--------hhhcCcchh---------ccc--------CchHHHHHH
Confidence 78999999999999999999999986 478776 566664432 111 112368999
Q ss_pred HcCccceeEEEEcccccchhhhhccccccccccCCCCcccccCcchHHHHHHHhhhccccccchhHHHHHHhhhhccccc
Q 000132 1891 EIGITDFVQVVQVDKDVADISHTGFKNMWTKELLSPGSAAIDWESNELVHLLSLLTTNVNRQCSKHLLEILDTLWDDCYT 1970 (2109)
Q Consensus 1891 eiGVrdfvqvv~~~k~ls~~~~~~~kn~~~~~~~~~~~~~~Dwes~E~~~l~s~ls~~~~~~~c~~lLevLD~~WD~~y~ 1970 (2109)
.+|||..|-+ .=+|.+..+ .+-...+ ..+|-..||. |||-+|=|.+=..--.
T Consensus 600 ALGVRKtVeL-------~~IF~RLl~----~~~~~~~--~~~WshvdLI---------------kYLaSV~~dip~~d~~ 651 (1093)
T PF12449_consen 600 ALGVRKTVEL-------QVIFTRLLN----PSPASSD--TGKWSHVDLI---------------KYLASVRDDIPPEDIK 651 (1093)
T ss_pred HhcCcceeeH-------HHHHHHHhc----ccccccc--CCCccHHHHH---------------HHHHHhhccCCHHHHH
Confidence 9999998865 223333332 1111111 5566665543 5555554433332222
Q ss_pred c-ccceeeeccCCCCCCcccchhhhhhcccceeeccCcccCCCccccccChhhHhhhhCCCCccccccc--c--cchhhc
Q 000132 1971 D-KIMGFFKSKPTGDDRSFQSSFINCICDIQWTISSMDDELHYPKDLFHDCDAVRSILGPSAPYIVPKV--K--SEKLVC 2045 (2109)
Q Consensus 1971 ~-k~~~~~~~~~~~~~~~~~SsF~~~i~~~~Wi~ssmd~elh~p~dlf~~~~~V~slLGs~apYa~p~v--~--s~~l~~ 2045 (2109)
. |.+-+|-.+.+..+. .......++.+.|||--.|++|.| |--.=|=-.+- + --+|.-
T Consensus 652 rLr~T~~cpaE~~~~~~----------------~~~~~~~rYk~seLyEP~d~lR~L-gLPil~Wpg~~r~~S~EakFL~ 714 (1093)
T PF12449_consen 652 RLRQTAICPAEAPPGGE----------------STKPKRKRYKASELYEPKDALRAL-GLPILQWPGKWRSSSPEAKFLF 714 (1093)
T ss_pred HHHhccCcccccCCccC----------------CCCCccceecHHHhcCChhhHHhc-CCcEEeCCCCCCCCCHHHHHHH
Confidence 2 222333332110000 011345588999999999999985 32221210011 1 347889
Q ss_pred ccCcccccCHHHHHHHHHHHHhcCC---chhhHHHHHhhhhhhhhhhhcC
Q 000132 2046 DIGLKTEVTIDDILEILKVWTRLEA---PFMARYYLLVNHDVWILIVLNQ 2092 (2109)
Q Consensus 2046 ~iG~kt~Vt~~d~l~~lk~W~~s~~---~f~as~~~~~~~~v~~~~~~n~ 2092 (2109)
.+|+|.--++++.++++- ..++. -=+|--|.|-||..-.|-.-++
T Consensus 715 ~LGLr~~Ps~~~L~~l~~--~~s~D~~lr~kAm~Yfi~n~~~n~Y~~~~~ 762 (1093)
T PF12449_consen 715 SLGLRSFPSVPELLELMA--AASDDEALRDKAMTYFIDNHHSNGYAAFDP 762 (1093)
T ss_pred HcCCCCCCCHHHHHHHHh--ccCccHHHHHHHHHHHHHhccccccccccc
Confidence 999999999999999996 33321 1244456666666444444443
No 10
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.24 E-value=0.0031 Score=75.19 Aligned_cols=90 Identities=22% Similarity=0.302 Sum_probs=72.5
Q ss_pred HhhhcCCCCcchhhcccccccCCCCCCCCCcEEEEEeCC---eEEEEeCCCCCCHhhHHHHHhccCccccCC-----CCC
Q 000132 1199 SQELYSQDSHFLLELVQNADDNIYPENVEPTLTFILQES---GIVVLNNEQGFSAENIRALCDVGNSTKKGS-----SAG 1270 (2109)
Q Consensus 1199 S~eLYSsdtHFL~ELIQNADDN~Y~e~v~PtLsF~L~dd---~LlV~NNE~GFTeeDIeAICsIG~STKkg~-----~~g 1270 (2109)
|.+...+-.+.|.|||+||=||.. ..+.+.+..+ .+.|..||.|+++++++.++.-+.++|... ...
T Consensus 16 s~~~i~~~~~~l~eLi~Na~dA~a-----~~I~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsk~~~~~~~~~~~ 90 (312)
T TIGR00585 16 AGEVIERPASVVKELVENSLDAGA-----TRIDVEIEEGGLKLIEVSDNGSGIDKEDLPLACERHATSKIQSFEDLERIE 90 (312)
T ss_pred CcCchhhHHHHHHHHHHHHHHCCC-----CEEEEEEEeCCEEEEEEEecCCCCCHHHHHHHhhCCCcCCCCChhHhhccc
Confidence 345556667899999999999753 3566666544 377999999999999999999999999763 224
Q ss_pred cccccccccceeccccCccEEecC
Q 000132 1271 YIGRKGIGFKSVFRVTDAPEIHSN 1294 (2109)
Q Consensus 1271 yIGeKGIGFKSVF~VTD~P~I~SG 1294 (2109)
..|.+|.|+-|...++ .+.|.|.
T Consensus 91 ~~G~rG~al~si~~~s-~~~i~S~ 113 (312)
T TIGR00585 91 TLGFRGEALASISSVS-RLTITTK 113 (312)
T ss_pred ccCccchHHHHHHhhC-cEEEEEe
Confidence 5799999999999999 7899774
No 11
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=94.92 E-value=0.0047 Score=61.65 Aligned_cols=78 Identities=21% Similarity=0.288 Sum_probs=61.6
Q ss_pred cchhhcccccccCCCCCCCCCcEEEEEeC--Ce--EEEEeCCCCCCHhhHHHHHhccCccccCCCCCcccccccccceec
Q 000132 1208 HFLLELVQNADDNIYPENVEPTLTFILQE--SG--IVVLNNEQGFSAENIRALCDVGNSTKKGSSAGYIGRKGIGFKSVF 1283 (2109)
Q Consensus 1208 HFL~ELIQNADDN~Y~e~v~PtLsF~L~d--d~--LlV~NNE~GFTeeDIeAICsIG~STKkg~~~gyIGeKGIGFKSVF 1283 (2109)
+.+.|||+||-|..... ..+.+.+.. +. +.|.+|+.|+++++++.|..-+-+++.. ..+.+..|+|+..+.
T Consensus 8 ~il~~ll~Na~~~~~~~---~~I~i~~~~~~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~~--~~~~~g~GlGL~~~~ 82 (111)
T PF02518_consen 8 QILSELLDNAIKHSPEG---GKIDITIEEDDDHLSIEISDNGVGIPPEELEKLFEPFFTSDKS--ETSISGHGLGLYIVK 82 (111)
T ss_dssp HHHHHHHHHHHHHHHHT---SEEEEEEEEETTEEEEEEEESSSSTTHHHHHHHCSTTSHSSSS--SGGSSSSSHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC---CEEEEEEEEecCeEEEEEEeccccccccccccchhhccccccc--ccccCCCChHHHHHH
Confidence 57889999999986543 466666643 44 5688999999999999999988887763 245777999999999
Q ss_pred cccCccE
Q 000132 1284 RVTDAPE 1290 (2109)
Q Consensus 1284 ~VTD~P~ 1290 (2109)
.+++.-.
T Consensus 83 ~~~~~~~ 89 (111)
T PF02518_consen 83 QIAERHG 89 (111)
T ss_dssp HHHHHTT
T ss_pred HHHHHCC
Confidence 9988743
No 12
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=93.80 E-value=0.17 Score=65.13 Aligned_cols=95 Identities=18% Similarity=0.254 Sum_probs=66.4
Q ss_pred CcchhhcccccccCCCCCCCCCcEEEEEe----CC---eEEEEeCCCCCCHhhHHHHH-hccCccccCCCCCcccccccc
Q 000132 1207 SHFLLELVQNADDNIYPENVEPTLTFILQ----ES---GIVVLNNEQGFSAENIRALC-DVGNSTKKGSSAGYIGRKGIG 1278 (2109)
Q Consensus 1207 tHFL~ELIQNADDN~Y~e~v~PtLsF~L~----dd---~LlV~NNE~GFTeeDIeAIC-sIG~STKkg~~~gyIGeKGIG 1278 (2109)
.+.|.|||.||=|+.-..+..|.+.+.+. ++ .+.|.+||.|.+++++..+- ..-.++|-.......|..|||
T Consensus 38 ~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~~~s~G~~GLG 117 (535)
T PRK04184 38 YTTVKELVDNSLDACEEAGILPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNLRQSRGQQGIG 117 (535)
T ss_pred HHHHHHHHHHHHHHhhhcCCCceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHHhhhhhccccccccccCCCCCCcc
Confidence 34678999999998654444567777665 22 26788999999999999874 455666743211335889999
Q ss_pred cceeccccCc-----cEEecC------CeEEEec
Q 000132 1279 FKSVFRVTDA-----PEIHSN------GFHVKFD 1301 (2109)
Q Consensus 1279 FKSVF~VTD~-----P~I~SG------GYsFkFD 1301 (2109)
+.+|..++.. ..|.|. +|.|.|.
T Consensus 118 Lsiv~~isq~~~G~~I~V~S~~~~g~~~~~~~l~ 151 (535)
T PRK04184 118 ISAAVLYAQMTTGKPVRVISSTGGSKKAYYFELK 151 (535)
T ss_pred hHHHHHHHHHhcCCcEEEEEecCCCceEEEEEEE
Confidence 9999988753 556542 3666664
No 13
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=91.93 E-value=0.37 Score=63.08 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=14.9
Q ss_pred hhhHHHHHHHHHHhhccc-HHHHHHHH
Q 000132 515 ESMRMFITTWKEACKNNT-MSEVLEKM 540 (2109)
Q Consensus 515 ~~~~~fittwk~ac~e~~-~~~~~e~~ 540 (2109)
.+++.|-+.|+||-+|+- ..|..|++
T Consensus 980 aDi~tFrnaf~ea~~en~krRee~Ek~ 1006 (1102)
T KOG1924|consen 980 ADIRTFRNAFLEAVAENEKRREEEEKE 1006 (1102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777766652 33444444
No 14
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=91.72 E-value=0.32 Score=63.64 Aligned_cols=32 Identities=16% Similarity=0.422 Sum_probs=22.2
Q ss_pred cHHHHHHHhhhhhhcccccccCCCCchhhHHHHhhhh
Q 000132 634 QVEEVMKKVSKYLEFDNSILNNAQSPVTKIIILLRKL 670 (2109)
Q Consensus 634 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 670 (2109)
..+-..+.+++||-+|.+-|. +..-+.++|.+
T Consensus 954 ~M~~lye~L~eYyaFd~kkys-----mEEFFaDi~tF 985 (1102)
T KOG1924|consen 954 NMEKLYESLGEYYAFDPKKYS-----MEEFFADIRTF 985 (1102)
T ss_pred HHHHHHHHHHHHeecCcccCc-----HHHHHHHHHHH
Confidence 345667778888887776554 67667777766
No 15
>PF12449 DUF3684: Protein of unknown function (DUF3684) ; InterPro: IPR022155 This domain family is found in eukaryotes, and is typically between 1072 and 1090 amino acids in length.
Probab=91.33 E-value=4.2 Score=56.21 Aligned_cols=269 Identities=18% Similarity=0.255 Sum_probs=148.2
Q ss_pred chhHHhhccCCCeeecCCCCeeecCCCcEEEeCCCCCCCCCCCCcccccccccccccChhhhcccccCcccccccchHHH
Q 000132 1672 ETDLIDNLQRIPFIPLSDGTFSSVDEGTIWLHSDCSVFDGGFGLEAFPNLCAKLRTVSPALLSASAVDKSSLGVISVDNL 1751 (2109)
Q Consensus 1672 ~~~l~~eLr~LpLIPLsDGswvSa~sg~VYfPS~~~g~~ip~~Le~fP~lya~LR~Vdp~a~~~s~~n~~~~~~~~a~dr 1751 (2109)
...+..-|+..++||..-|- ..-...|||+- . |+-||-|| . .+++ -.
T Consensus 548 k~~v~~lL~~~t~iPTk~GM---kkP~EaYF~sV-~-------------LFdDLPvv-----~-~~~g----------vk 594 (1093)
T PF12449_consen 548 KQTVVSLLQPKTCIPTKLGM---KKPSEAYFPSV-K-------------LFDDLPVV-----T-GCNG----------VK 594 (1093)
T ss_pred HHHHHHHhccCccccccccc---CCchhhhcchh-h-------------hhcCcchh-----c-ccCc----------hH
Confidence 34567779999999999994 33467899984 1 22256555 1 1122 35
Q ss_pred HHHHHHcCceecchHHHHHhhccc-cccCccccCCC-hhhHHHHHHHHhhhccccCCCcchhhhhHHHHhhhcccccccc
Q 000132 1752 NRMLLKIGVQQLSAHDIVKVHILP-AISDETTANGD-KNLMADYLCFVMMHLEYYCPNCHVEREFIVSELRKKAFVLTNH 1829 (2109)
Q Consensus 1752 ~~Lf~~LGVqe~s~~~VIr~hILp-~ys~~~~~~~~-~~~~~~yL~Fl~l~l~s~~~~~~~er~~i~s~lr~~a~~ltn~ 1829 (2109)
.+||.+||||.--.=++|=.+++. .-.... ..+. -..+++||.=+..++... | +..||..++.
T Consensus 595 EKfL~ALGVRKtVeL~~IF~RLl~~~~~~~~-~~~WshvdLIkYLaSV~~dip~~------d----~~rLr~T~~c---- 659 (1093)
T PF12449_consen 595 EKFLVALGVRKTVELQVIFTRLLNPSPASSD-TGKWSHVDLIKYLASVRDDIPPE------D----IKRLRQTAIC---- 659 (1093)
T ss_pred HHHHHHhcCcceeeHHHHHHHHhcccccccc-CCCccHHHHHHHHHHhhccCCHH------H----HHHHHhccCc----
Confidence 679999999995444455444444 222222 2222 255788888888875442 3 4456766654
Q ss_pred cccCCCccc--eEeCCCCCCCcchhhhccc------cCceEEEeccccccCCCCCcccccchhHHHHHHHcCccceeEEE
Q 000132 1830 GFKRPSEIP--IHFGKEFGNPVSVNMLIHD------IDIKWYEVDITYLKHPAKESLSCGLVKWRKFFKEIGITDFVQVV 1901 (2109)
Q Consensus 1830 g~k~P~~~~--Iyf~~e~gn~~~p~kLl~~------~~v~w~el~~~YL~~~~p~~~~~~~~sWr~wl~eiGVrdfvqvv 1901 (2109)
|+|.+ --=++.-+.-|-+..|.+| |.++.+.- ++.-.+. +.+ -+||..+|+|.|..+
T Consensus 660 ----paE~~~~~~~~~~~~~rYk~seLyEP~d~lR~LgLPil~W-------pg~~r~~-S~E--akFL~~LGLr~~Ps~- 724 (1093)
T PF12449_consen 660 ----PAEAPPGGESTKPKRKRYKASELYEPKDALRALGLPILQW-------PGKWRSS-SPE--AKFLFSLGLRSFPSV- 724 (1093)
T ss_pred ----ccccCCccCCCCCccceecHHHhcCChhhHHhcCCcEEeC-------CCCCCCC-CHH--HHHHHHcCCCCCCCH-
Confidence 34420 0000111123334444444 66666222 2111111 111 379999999999887
Q ss_pred EcccccchhhhhccccccccccCCCCcccccCcchHHHHHHHhhhccccccchhHHH-HHHhhhhccccccccceeeecc
Q 000132 1902 QVDKDVADISHTGFKNMWTKELLSPGSAAIDWESNELVHLLSLLTTNVNRQCSKHLL-EILDTLWDDCYTDKIMGFFKSK 1980 (2109)
Q Consensus 1902 ~~~k~ls~~~~~~~kn~~~~~~~~~~~~~~Dwes~E~~~l~s~ls~~~~~~~c~~lL-evLD~~WD~~y~~k~~~~~~~~ 1980 (2109)
+|+++|+. +.+.+.+-+..=| =.|+++=-.+|.....
T Consensus 725 ----------------------------------~~L~~l~~--~~s~D~~lr~kAm~Yfi~n~~~n~Y~~~~~------ 762 (1093)
T PF12449_consen 725 ----------------------------------PELLELMA--AASDDEALRDKAMTYFIDNHHSNGYAAFDP------ 762 (1093)
T ss_pred ----------------------------------HHHHHHHh--ccCccHHHHHHHHHHHHHhccccccccccc------
Confidence 67777764 3333332222111 1122222122222111
Q ss_pred CCCCCCcccchhhhhhcccceeeccCcc---cCCCccccccChhhHhhhhCCCCcccccccccchhhcccCcccccCHHH
Q 000132 1981 PTGDDRSFQSSFINCICDIQWTISSMDD---ELHYPKDLFHDCDAVRSILGPSAPYIVPKVKSEKLVCDIGLKTEVTIDD 2057 (2109)
Q Consensus 1981 ~~~~~~~~~SsF~~~i~~~~Wi~ssmd~---elh~p~dlf~~~~~V~slLGs~apYa~p~v~s~~l~~~iG~kt~Vt~~d 2057 (2109)
-.-.+...++--.+. .|.-|...|.+-+ -.+||=. -++|.+.+ =+..+|.+-.=+..+
T Consensus 763 -------------~~~~~~~fLP~~~~~~~~~L~~P~~cftn~~--aavlGF~--iLr~dL~~--ha~KfGV~~~P~~~~ 823 (1093)
T PF12449_consen 763 -------------PSFVDKAFLPIEGSEGKKKLVTPSECFTNPG--AAVLGFP--ILRPDLHP--HASKFGVKRDPPIAE 823 (1093)
T ss_pred -------------ccccccceeeccccccchhhcChhhhhcCCC--cceeCch--hhcchhHH--HHHHhCCCCCCCHHH
Confidence 013455666665554 7999999999944 3566642 23343433 456789999999999
Q ss_pred HHHHHHH
Q 000132 2058 ILEILKV 2064 (2109)
Q Consensus 2058 ~l~~lk~ 2064 (2109)
|++.|..
T Consensus 824 cv~~L~~ 830 (1093)
T PF12449_consen 824 CVDRLIA 830 (1093)
T ss_pred HHHHHHh
Confidence 9988864
No 16
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=90.73 E-value=0.18 Score=64.31 Aligned_cols=86 Identities=20% Similarity=0.264 Sum_probs=63.4
Q ss_pred cchhhcccccccCCCCCCCCCcEEEEEeC---C--eEEEEeCCCCCCHhhHHHHHh-ccCccccCCCCCcccccccccce
Q 000132 1208 HFLLELVQNADDNIYPENVEPTLTFILQE---S--GIVVLNNEQGFSAENIRALCD-VGNSTKKGSSAGYIGRKGIGFKS 1281 (2109)
Q Consensus 1208 HFL~ELIQNADDN~Y~e~v~PtLsF~L~d---d--~LlV~NNE~GFTeeDIeAICs-IG~STKkg~~~gyIGeKGIGFKS 1281 (2109)
+.+.|||.||=|+.-..+..|.+.+.+.. + .+.|..||.|.+++++..|-. ...++|.......-|..|+|+.+
T Consensus 31 ~VlkELVeNAIDA~~~~g~~p~I~V~i~~~g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~~~~s~G~~GlGLs~ 110 (488)
T TIGR01052 31 TVIHELVTNSLDACEEAGILPDIKVEIEKIGKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHRIIQSRGQQGIGISG 110 (488)
T ss_pred HHHHHHHHHHHHHhhccCCCceEEEEEEECCCceEEEEEEECCCCCCHHHHHhhhhhccccCccccccccCCCccEehhH
Confidence 46788999999986444445677777652 3 478899999999999998854 57777754222335889999999
Q ss_pred eccccCc-----cEEec
Q 000132 1282 VFRVTDA-----PEIHS 1293 (2109)
Q Consensus 1282 VF~VTD~-----P~I~S 1293 (2109)
+..++.. .+|.|
T Consensus 111 ~~~isq~~~G~~i~V~S 127 (488)
T TIGR01052 111 AVLYSQMTTGKPVKVIS 127 (488)
T ss_pred HHHHHHHcCCceEEEEE
Confidence 9998864 66755
No 17
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=89.67 E-value=0.54 Score=44.59 Aligned_cols=76 Identities=24% Similarity=0.300 Sum_probs=54.4
Q ss_pred cchhhcccccccCCCCCCCCCcEEEEEe--CCe--EEEEeCCCCCCHhhHHHHHhccCccccCCCCCcccccccccceec
Q 000132 1208 HFLLELVQNADDNIYPENVEPTLTFILQ--ESG--IVVLNNEQGFSAENIRALCDVGNSTKKGSSAGYIGRKGIGFKSVF 1283 (2109)
Q Consensus 1208 HFL~ELIQNADDN~Y~e~v~PtLsF~L~--dd~--LlV~NNE~GFTeeDIeAICsIG~STKkg~~~gyIGeKGIGFKSVF 1283 (2109)
+.+.||+.||-+.... .+.+.+.+. ++. +.|.+|+.|++++.+..+..-+.+.+. .. .-.+..|+|++.|-
T Consensus 8 ~~~~~l~~n~~~~~~~---~~~v~i~~~~~~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~~-~~-~~~~~~g~gl~~~~ 82 (111)
T smart00387 8 QVLSNLLDNAIKYTPE---GGRITVTLERDGDHLEITVEDNGPGIPPEDLEKIFEPFFRTDG-RS-RKIGGTGLGLSIVK 82 (111)
T ss_pred HHHHHHHHHHHhcCCC---CCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHHhcCeEECCC-CC-CCCCcccccHHHHH
Confidence 4567788888887654 234444443 333 667899999999999999988776653 21 23567999999998
Q ss_pred cccCc
Q 000132 1284 RVTDA 1288 (2109)
Q Consensus 1284 ~VTD~ 1288 (2109)
.+++.
T Consensus 83 ~~~~~ 87 (111)
T smart00387 83 KLVEL 87 (111)
T ss_pred HHHHH
Confidence 87776
No 18
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=89.66 E-value=0.42 Score=62.70 Aligned_cols=97 Identities=24% Similarity=0.343 Sum_probs=73.6
Q ss_pred HhhhcCCCCcchhhcccccccCCCCCCCCCcEEEEEeCCe---EEEEeCCCCCCHhhHHHHHhccCccccCC-----CCC
Q 000132 1199 SQELYSQDSHFLLELVQNADDNIYPENVEPTLTFILQESG---IVVLNNEQGFSAENIRALCDVGNSTKKGS-----SAG 1270 (2109)
Q Consensus 1199 S~eLYSsdtHFL~ELIQNADDN~Y~e~v~PtLsF~L~dd~---LlV~NNE~GFTeeDIeAICsIG~STKkg~-----~~g 1270 (2109)
|.+.-......|+|||+||=||.. ..+.+.+.+++ +.|..||.|.+.+|++-+|.-+.++|-.. ...
T Consensus 16 AgevI~~~~svvkElveNsiDAga-----t~I~v~i~~~g~~~i~V~DnG~Gi~~~~~~~~~~~~~tsKi~~~~dl~~~~ 90 (617)
T PRK00095 16 AGEVVERPASVVKELVENALDAGA-----TRIDIEIEEGGLKLIRVRDNGCGISKEDLALALARHATSKIASLDDLEAIR 90 (617)
T ss_pred CcCcccCHHHHHHHHHHHHHhCCC-----CEEEEEEEeCCeEEEEEEEcCCCCCHHHHHHHhhccCCCCCCChhHhhccc
Confidence 455566678899999999999752 46777775444 88999999999999999999888888754 113
Q ss_pred cccccccccceeccccCccEEecC------CeEEEec
Q 000132 1271 YIGRKGIGFKSVFRVTDAPEIHSN------GFHVKFD 1301 (2109)
Q Consensus 1271 yIGeKGIGFKSVF~VTD~P~I~SG------GYsFkFD 1301 (2109)
.-|..|.|--|+=.|+ .+.|.|. ||...|.
T Consensus 91 t~GfrGeAL~sI~~vs-~l~i~s~~~~~~~~~~~~~~ 126 (617)
T PRK00095 91 TLGFRGEALPSIASVS-RLTLTSRTADAAEGWQIVYE 126 (617)
T ss_pred cCCcchhHHHhhhhce-EEEEEEecCCCCceEEEEec
Confidence 3588888888888887 5777652 4666654
No 19
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.37 E-value=1.4 Score=55.53 Aligned_cols=6 Identities=17% Similarity=0.479 Sum_probs=2.5
Q ss_pred CCCCCC
Q 000132 59 TNIPFQ 64 (2109)
Q Consensus 59 ~~~~~~ 64 (2109)
|+||++
T Consensus 424 p~f~m~ 429 (483)
T KOG2236|consen 424 PSFPMF 429 (483)
T ss_pred CCCCcc
Confidence 444443
No 20
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=85.53 E-value=1.7 Score=54.01 Aligned_cols=11 Identities=27% Similarity=0.280 Sum_probs=5.8
Q ss_pred cccCCCCCCCC
Q 000132 77 MQNANLLTQNP 87 (2109)
Q Consensus 77 ~~n~~~p~~~~ 87 (2109)
++|.+.|.|.|
T Consensus 421 ~~~~~~p~~~~ 431 (462)
T KOG2199|consen 421 NSNPATPQQQP 431 (462)
T ss_pred ccCCCCCCCCc
Confidence 45555555555
No 21
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=84.75 E-value=1.1 Score=41.78 Aligned_cols=76 Identities=21% Similarity=0.289 Sum_probs=52.9
Q ss_pred cchhhcccccccCCCCCCCCCcEEEEEeCC----eEEEEeCCCCCCHhhHHHHHhccCccccCCCCCcccccccccceec
Q 000132 1208 HFLLELVQNADDNIYPENVEPTLTFILQES----GIVVLNNEQGFSAENIRALCDVGNSTKKGSSAGYIGRKGIGFKSVF 1283 (2109)
Q Consensus 1208 HFL~ELIQNADDN~Y~e~v~PtLsF~L~dd----~LlV~NNE~GFTeeDIeAICsIG~STKkg~~~gyIGeKGIGFKSVF 1283 (2109)
+.+.|||.||=+..+.. ...+.+.+... .+.|.+++.|+++.+......-.. +.... ..-+..|+|++.+-
T Consensus 3 ~~~~~ll~Na~~~~~~~--~~~v~i~~~~~~~~~~v~i~d~g~g~~~~~~~~~~~~~~--~~~~~-~~~~~~g~gl~~~~ 77 (103)
T cd00075 3 QVLLNLLSNAIKHTPEG--GGRITISVERDGDHLEIRVEDNGPGIPEEDLERIFERFS--DGSRS-RKGGGTGLGLSIVK 77 (103)
T ss_pred HHHHHHHHHHHHhCcCC--CCeEEEEEEecCCEEEEEEEeCCCCCCHHHHHHHhhhhh--cCCCC-CCCCccccCHHHHH
Confidence 46789999998876641 24566655432 366789999999999988776541 11111 22467999999999
Q ss_pred cccCc
Q 000132 1284 RVTDA 1288 (2109)
Q Consensus 1284 ~VTD~ 1288 (2109)
.+.+.
T Consensus 78 ~~~~~ 82 (103)
T cd00075 78 KLVEL 82 (103)
T ss_pred HHHHH
Confidence 98884
No 22
>PF13388 DUF4106: Protein of unknown function (DUF4106)
Probab=83.75 E-value=1.5 Score=52.62 Aligned_cols=13 Identities=15% Similarity=0.082 Sum_probs=7.4
Q ss_pred HHHhhhccccccH
Q 000132 273 EYTDTHKAKDIKV 285 (2109)
Q Consensus 273 ~f~~~~~~~~~~~ 285 (2109)
.||.+-|.+|=+-
T Consensus 355 ~~mkrvknrdgtk 367 (422)
T PF13388_consen 355 FFMKRVKNRDGTK 367 (422)
T ss_pred hhHHhhhcCCCcc
Confidence 4666666665543
No 23
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=82.33 E-value=3.9 Score=54.99 Aligned_cols=81 Identities=20% Similarity=0.251 Sum_probs=59.0
Q ss_pred cchhhcccccccCCCCCCCCCcEEEEEe--CCe--EEEEeCCCCCCHhhHHHHHh-ccCccccCCCCCccccccccccee
Q 000132 1208 HFLLELVQNADDNIYPENVEPTLTFILQ--ESG--IVVLNNEQGFSAENIRALCD-VGNSTKKGSSAGYIGRKGIGFKSV 1282 (2109)
Q Consensus 1208 HFL~ELIQNADDN~Y~e~v~PtLsF~L~--dd~--LlV~NNE~GFTeeDIeAICs-IG~STKkg~~~gyIGeKGIGFKSV 1282 (2109)
+.|.|||.||=|+....+..|.+.+.+. ++. |.|.+||.|.+++++..|-+ ...++|-......-|..|+|=.++
T Consensus 49 tVLkNLIeNALDAs~~~gilp~I~V~Ie~~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG~rG~GLgla 128 (795)
T PRK14868 49 TAVKEAVDNALDATEEAGILPDIYVEIEEVGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRGQQGIGISAA 128 (795)
T ss_pred HHHHHHHHHHHHhCcccCCCceEEEEEEECCCEEEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCCCCceehHHH
Confidence 3577999999998765555567777765 333 78999999999999999987 444555332112247899999998
Q ss_pred ccccCc
Q 000132 1283 FRVTDA 1288 (2109)
Q Consensus 1283 F~VTD~ 1288 (2109)
..++..
T Consensus 129 i~~sql 134 (795)
T PRK14868 129 VLYSQL 134 (795)
T ss_pred HHHHHH
Confidence 877764
No 24
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=80.31 E-value=2.5 Score=52.62 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=11.2
Q ss_pred cccccCCCCCCCCCCCCCCCCCCccc
Q 000132 75 LFMQNANLLTQNPNLPPQQPPSSACN 100 (2109)
Q Consensus 75 ~~~~n~~~p~~~~~~~~~~~~~~~~~ 100 (2109)
+|.+|.|-||| +.+|.++||++++.
T Consensus 401 q~~~q~yspp~-q~~pl~~Pp~~~~~ 425 (462)
T KOG2199|consen 401 QYPSQSYSPPQ-QQQPLQQPPNSNPA 425 (462)
T ss_pred ccCcccCCChh-hcCCCCCCCccCCC
Confidence 34445554444 22333445555544
No 25
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=78.70 E-value=9.7 Score=50.56 Aligned_cols=15 Identities=27% Similarity=0.080 Sum_probs=8.9
Q ss_pred CCCCCCCCCCCCCCh
Q 000132 36 PNFAFQNPNIFFPNP 50 (2109)
Q Consensus 36 ~~~~~~~p~~~~~n~ 50 (2109)
++-++|||..|=+|.
T Consensus 951 ~r~~~~~~~~~~~~~ 965 (1106)
T KOG0162|consen 951 TRRAPQNKQAYGQNG 965 (1106)
T ss_pred CCCCCCCcccccCCC
Confidence 344466776666665
No 26
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=75.27 E-value=16 Score=48.96 Aligned_cols=95 Identities=18% Similarity=0.304 Sum_probs=65.6
Q ss_pred CcchhhcccccccCCCCCCCCCcEEEEEeCC-eEEEEeCCCCCCHh--------hHHHH-HhccCccccCCCC--Ccccc
Q 000132 1207 SHFLLELVQNADDNIYPENVEPTLTFILQES-GIVVLNNEQGFSAE--------NIRAL-CDVGNSTKKGSSA--GYIGR 1274 (2109)
Q Consensus 1207 tHFL~ELIQNADDN~Y~e~v~PtLsF~L~dd-~LlV~NNE~GFTee--------DIeAI-CsIG~STKkg~~~--gyIGe 1274 (2109)
-|.|+|||=||=|+.- .+....+.+.+.++ .|.|.+||+|...+ .++-| +-...++|-++.. -.-|.
T Consensus 39 ~~~v~ElvdNaiDe~~-ag~a~~I~V~i~~~g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~lhag~kfd~~~yk~s~G~ 117 (638)
T PRK05644 39 HHLVYEIVDNSIDEAL-AGYCDHIEVTINEDGSITVTDNGRGIPVDIHPKTGKPAVEVVLTVLHAGGKFGGGGYKVSGGL 117 (638)
T ss_pred HhhhHHhhhccccccc-CCCCCEEEEEEeCCCcEEEEEeCccccCCccCCCCCCchHHheeeecccCccCCCcccccCCc
Confidence 4788999999999642 23346788888754 68899999998764 23334 3334455554421 12589
Q ss_pred cccccceeccccCccEEec--C--CeEEEecC
Q 000132 1275 KGIGFKSVFRVTDAPEIHS--N--GFHVKFDT 1302 (2109)
Q Consensus 1275 KGIGFKSVF~VTD~P~I~S--G--GYsFkFD~ 1302 (2109)
-|+|=+||=.++....|.+ + +|...|.+
T Consensus 118 ~G~Gls~vnalS~~~~v~t~r~g~~~~~~~~~ 149 (638)
T PRK05644 118 HGVGVSVVNALSTWLEVEVKRDGKIYYQEYER 149 (638)
T ss_pred cccchhhhhheeceEEEEEEeCCcEEEEEEEC
Confidence 9999999999998666543 2 47888865
No 27
>PHA03247 large tegument protein UL36; Provisional
Probab=67.53 E-value=34 Score=51.39 Aligned_cols=13 Identities=38% Similarity=0.634 Sum_probs=5.9
Q ss_pred CCCCCCCCCCCCC
Q 000132 11 PVGGVGGEGTGGG 23 (2109)
Q Consensus 11 ~~~~~~~~~~~gg 23 (2109)
|.-.+||...+||
T Consensus 2848 P~~~~~g~~~~~~ 2860 (3151)
T PHA03247 2848 PSLPLGGSVAPGG 2860 (3151)
T ss_pred CCCCCCCccCCCC
Confidence 3334444444444
No 28
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=66.89 E-value=4.1 Score=54.23 Aligned_cols=81 Identities=21% Similarity=0.276 Sum_probs=57.9
Q ss_pred cchhhcccccccCCCCCCCCCcEEEEEeC--C-e--EEEEeCCCCCCHhhHHHHHhc-cCccccCCCCCcccccccccce
Q 000132 1208 HFLLELVQNADDNIYPENVEPTLTFILQE--S-G--IVVLNNEQGFSAENIRALCDV-GNSTKKGSSAGYIGRKGIGFKS 1281 (2109)
Q Consensus 1208 HFL~ELIQNADDN~Y~e~v~PtLsF~L~d--d-~--LlV~NNE~GFTeeDIeAICsI-G~STKkg~~~gyIGeKGIGFKS 1281 (2109)
+.+.|||.||=|+....+..|.+.+.+.. + . +.|..||.|.+++++..+-.- -.++|-......-|..|+|..+
T Consensus 39 ~VVkELVeNAIDA~~~~g~~p~I~V~I~~~g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~~qS~G~rG~GLa~ 118 (659)
T PRK14867 39 TIIHELVTNSLDACEEAEILPDIKVEIEKLGSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRLIQSRGQQGIGAAG 118 (659)
T ss_pred HHHHHHHHHHHHHhhccCCCceEEEEEEECCCcEEEEEEEeeCeeCCHHHHhhhhccccccCcccceeccCCCCcccHHH
Confidence 46789999999986544445677777753 2 2 789999999999999988765 4444532211224778999999
Q ss_pred eccccCc
Q 000132 1282 VFRVTDA 1288 (2109)
Q Consensus 1282 VF~VTD~ 1288 (2109)
|-.++..
T Consensus 119 a~~vsql 125 (659)
T PRK14867 119 VLLFSQI 125 (659)
T ss_pred HHHHHHH
Confidence 8877654
No 29
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=64.47 E-value=8.7 Score=51.13 Aligned_cols=95 Identities=18% Similarity=0.298 Sum_probs=72.2
Q ss_pred CcchhhcccccccCCCCCCCCCcEEEEEeCC-eEEEEeCCCCCCHhhHH---------HHHhccCccccCCC--CCcccc
Q 000132 1207 SHFLLELVQNADDNIYPENVEPTLTFILQES-GIVVLNNEQGFSAENIR---------ALCDVGNSTKKGSS--AGYIGR 1274 (2109)
Q Consensus 1207 tHFL~ELIQNADDN~Y~e~v~PtLsF~L~dd-~LlV~NNE~GFTeeDIe---------AICsIG~STKkg~~--~gyIGe 1274 (2109)
.|.|+|||=||=|+.-. +..+.+...+.++ .|.|.+||+|...++.. ..|.+..++|-++. .-.-|.
T Consensus 39 ~~lv~EivdNaiDe~~a-g~a~~I~V~i~~dg~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lhagsKf~~~~yk~SgGl 117 (631)
T PRK05559 39 HHLVQEVIDNSVDEALA-GHGKRIEVTLHADGSVSVRDNGRGIPVGIHPEEGKSGVEVILTKLHAGGKFSNKAYKFSGGL 117 (631)
T ss_pred hhhhhhhhccccchhhc-CCCCEEEEEEeCCCcEEEEEcCCCCCcccccccCCcchheeeeeccccCccCCccccccCcc
Confidence 57999999999998643 3457899999866 58899999999888766 46776778887642 122588
Q ss_pred cccccceeccccCccEEec--CC--eEEEecC
Q 000132 1275 KGIGFKSVFRVTDAPEIHS--NG--FHVKFDT 1302 (2109)
Q Consensus 1275 KGIGFKSVF~VTD~P~I~S--GG--YsFkFD~ 1302 (2109)
-|+|=++|=.++....|.+ +| |...|..
T Consensus 118 ~GvGls~vNalS~~l~V~s~r~g~~~~~~f~~ 149 (631)
T PRK05559 118 HGVGVSVVNALSSRLEVEVKRDGKVYRQRFEG 149 (631)
T ss_pred cccchhhhhhheeeEEEEEEeCCeEEEEEEEC
Confidence 9999999999988777644 33 6777753
No 30
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=63.90 E-value=24 Score=43.80 Aligned_cols=49 Identities=22% Similarity=0.237 Sum_probs=32.2
Q ss_pred HHhhcccccccccceEEccccchHHHHHHHHH-------hhhHHHHHHHhhhCCCC
Q 000132 292 IAKKRSLASKEQLGVRIQNLGMHINFIREARK-------SQDVTLKKFLKELQPHH 340 (2109)
Q Consensus 292 ~a~~~~v~~~e~lgvriq~l~~~i~~i~~a~~-------~e~~~~k~~~~~~~~~~ 340 (2109)
|++.-+-+|-.-.+=-|..|=+-|+.|++.|- .=.+-|+.||-..-++.
T Consensus 377 IsrAvsdASaGDy~~AiETllTAI~lIKqSrv~~DdRCrvLissL~dcLhgiesks 432 (498)
T KOG4849|consen 377 ISRAVSDASAGDYKGAIETLLTAIQLIKQSRVGHDDRCRVLISSLEDCLHGIESKS 432 (498)
T ss_pred HHHHhcccccccchhHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhccc
Confidence 44444445566666667788888888888874 34566777776655543
No 31
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=60.69 E-value=5.8 Score=50.18 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=54.6
Q ss_pred chhhcccccccCCCCC-CCCCcEEEEEe--CCe--EEEEeCCCCCCHhhHHHHHhccCccccCCCCCcccccccccceec
Q 000132 1209 FLLELVQNADDNIYPE-NVEPTLTFILQ--ESG--IVVLNNEQGFSAENIRALCDVGNSTKKGSSAGYIGRKGIGFKSVF 1283 (2109)
Q Consensus 1209 FL~ELIQNADDN~Y~e-~v~PtLsF~L~--dd~--LlV~NNE~GFTeeDIeAICsIG~STKkg~~~gyIGeKGIGFKSVF 1283 (2109)
.+.+||.||=++.... ...+.+.+.+. ++. +.|.+||.|+.+++.+.|.+=|-+||.... |..|+|-.-|.
T Consensus 436 vl~nLl~NAi~~~~~~~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk~~~~----~g~GlGL~ivk 511 (545)
T PRK15053 436 IVGNLLDNAFEASLRSDEGNKIVELFLSDEGDDVVIEVADQGCGVPESLRDKIFEQGVSTRADEP----GEHGIGLYLIA 511 (545)
T ss_pred HHHHHHHHHHHHHhhCCCCCceEEEEEEECCCEEEEEEEeCCCCcCHHHHHHHhCCCCCCCCCCC----CCceeCHHHHH
Confidence 4678888887763211 11245665554 333 678899999999999999999999886532 45699999999
Q ss_pred cccCc
Q 000132 1284 RVTDA 1288 (2109)
Q Consensus 1284 ~VTD~ 1288 (2109)
++.+.
T Consensus 512 ~iv~~ 516 (545)
T PRK15053 512 SYVTR 516 (545)
T ss_pred HHHHH
Confidence 88663
No 32
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=60.13 E-value=15 Score=48.99 Aligned_cols=95 Identities=19% Similarity=0.381 Sum_probs=69.9
Q ss_pred CcchhhcccccccCCCCCCCCCcEEEEEe-CCeEEEEeCCCCCCHhh--------HHHH-HhccCccccCCC--CCcccc
Q 000132 1207 SHFLLELVQNADDNIYPENVEPTLTFILQ-ESGIVVLNNEQGFSAEN--------IRAL-CDVGNSTKKGSS--AGYIGR 1274 (2109)
Q Consensus 1207 tHFL~ELIQNADDN~Y~e~v~PtLsF~L~-dd~LlV~NNE~GFTeeD--------IeAI-CsIG~STKkg~~--~gyIGe 1274 (2109)
.|.|+|||-||=|+.-. +..-.+...+. ++.|.|.+||+|...++ ++-+ +....++|-++. .-.-|.
T Consensus 32 ~~lv~ElvdNsiDE~~a-g~a~~I~V~i~~d~~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~lhagsK~~~~~~~~SgG~ 110 (625)
T TIGR01055 32 NHLVQEVIDNSVDEALA-GFASIIMVILHQDQSIEVFDNGRGMPVDIHPKEGVSAVEVILTTLHAGGKFSNKNYHFSGGL 110 (625)
T ss_pred ceeehhhhhcccchhhc-CCCCEEEEEEeCCCeEEEEecCCccCcccccccCCcHHHHhhhcccccCCCCCCcceecCCC
Confidence 78999999999994322 22356777886 45689999999999888 7755 477778887652 123688
Q ss_pred cccccceeccccCccEE--ecCC--eEEEecC
Q 000132 1275 KGIGFKSVFRVTDAPEI--HSNG--FHVKFDT 1302 (2109)
Q Consensus 1275 KGIGFKSVF~VTD~P~I--~SGG--YsFkFD~ 1302 (2109)
-|.|=++|=.++....| ..+| |...|..
T Consensus 111 ~GvGls~vnalS~~l~v~~~r~g~~~~~~~~~ 142 (625)
T TIGR01055 111 HGVGISVVNALSKRVKIKVYRQGKLYSIAFEN 142 (625)
T ss_pred cchhHHHHHHhcCeEEEEEEECCeEEEEEEEC
Confidence 99999999999985554 4344 6777754
No 33
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.56 E-value=1.3e+02 Score=42.38 Aligned_cols=66 Identities=14% Similarity=0.046 Sum_probs=34.4
Q ss_pred cCCcHHHHHHHHHHHHHHHHHHHHccCccchhHHHHHHHHhccc--CcccccCcccccchhHHHHHHH
Q 000132 131 QKLNKEFLERIDRAVVKARSELIMAGESVSSWKVSRSVLLKLQV--DSWSSLGFQMQEVPSLHKLMVT 196 (2109)
Q Consensus 131 ~~~~~~~~~~~~~a~~k~r~~~~~~ge~V~~~kv~~~v~~~l~v--~s~~slg~~~~~vp~L~~L~~~ 196 (2109)
.+.+.-+..++=+-+.++-...+.+--.-...|....+-+.|.+ +=+++--+.+.-+.-|++|-+.
T Consensus 940 ~~~~~P~~~~~i~~~~e~~~~r~~a~~~~~~krkl~d~~kRL~~L~~~L~~~~LSp~~~~~L~~la~~ 1007 (1049)
T KOG0307|consen 940 PKHPIPEELQIIETFLEELLQRCSARTDPQTKRKLKDVTKRLEILFDKLRDGTLSPPITDGLHQLAQS 1007 (1049)
T ss_pred cccCCchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhcCCcChHHHHHHHHHHHH
Confidence 33333344444444444433333333333333444444444443 3377778999999988887543
No 34
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=57.40 E-value=45 Score=44.88 Aligned_cols=95 Identities=18% Similarity=0.339 Sum_probs=64.0
Q ss_pred CcchhhcccccccCCCCCCCCCcEEEEEeCC-eEEEEeCCCCCCHh--------hHHHH-HhccCccccCCC--CCcccc
Q 000132 1207 SHFLLELVQNADDNIYPENVEPTLTFILQES-GIVVLNNEQGFSAE--------NIRAL-CDVGNSTKKGSS--AGYIGR 1274 (2109)
Q Consensus 1207 tHFL~ELIQNADDN~Y~e~v~PtLsF~L~dd-~LlV~NNE~GFTee--------DIeAI-CsIG~STKkg~~--~gyIGe 1274 (2109)
-|.|+|||=||=|+.- .+....+...+.++ .+.|.+||+|...+ .++-| +-...++|-++. .-.-|.
T Consensus 32 ~~vv~Elv~NaiDe~~-ag~a~~I~V~i~~~g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~l~ag~kf~~~~~k~s~G~ 110 (654)
T TIGR01059 32 HHLVYEVVDNSIDEAM-AGYCDTINVTINDDGSVTVEDNGRGIPVDIHPEEGISAVEVVLTVLHAGGKFDKDSYKVSGGL 110 (654)
T ss_pred HhhhHHhhhccccccc-cCCCCEEEEEEeCCCcEEEEEeCCCcCccccCcCCCCchHHheeeecccCccCCCcceecCCc
Confidence 4788899999999542 22246788888755 58899999999764 23333 333445554431 022589
Q ss_pred cccccceeccccCccEE--ecCC--eEEEecC
Q 000132 1275 KGIGFKSVFRVTDAPEI--HSNG--FHVKFDT 1302 (2109)
Q Consensus 1275 KGIGFKSVF~VTD~P~I--~SGG--YsFkFD~ 1302 (2109)
-|.|=+||=.++....| ..+| |...|..
T Consensus 111 ~G~gl~~inalS~~l~v~~~~~g~~~~~~~~~ 142 (654)
T TIGR01059 111 HGVGVSVVNALSEWLEVTVFRDGKIYRQEFER 142 (654)
T ss_pred cchhHHHHHHhcCeEEEEEEECCeEEEEEEeC
Confidence 99999999999985555 4344 6677754
No 35
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=54.91 E-value=26 Score=47.02 Aligned_cols=99 Identities=20% Similarity=0.261 Sum_probs=67.1
Q ss_pred HhhhcCCCCcchhhcccccccCCCCCCCCCcEEEEEeCCe---EEEEeCCCCCCHhhHHHHHhccCccccCCCCCccccc
Q 000132 1199 SQELYSQDSHFLLELVQNADDNIYPENVEPTLTFILQESG---IVVLNNEQGFSAENIRALCDVGNSTKKGSSAGYIGRK 1275 (2109)
Q Consensus 1199 S~eLYSsdtHFL~ELIQNADDN~Y~e~v~PtLsF~L~dd~---LlV~NNE~GFTeeDIeAICsIG~STKkg~~~gyIGeK 1275 (2109)
|.+.--..+-.|+|||.||=||.. ..+.+.+.+++ |.|..||.|.+++|+.-.|.=...+|-.+...---=.
T Consensus 17 AGEVIerPaSVVKELVENSlDAGA-----t~I~I~ve~gG~~~I~V~DNG~Gi~~~Dl~la~~rHaTSKI~~~~DL~~I~ 91 (638)
T COG0323 17 AGEVIERPASVVKELVENSLDAGA-----TRIDIEVEGGGLKLIRVRDNGSGIDKEDLPLALLRHATSKIASLEDLFRIR 91 (638)
T ss_pred ccceeecHHHHHHHHHhcccccCC-----CEEEEEEccCCccEEEEEECCCCCCHHHHHHHHhhhccccCCchhHHHHhh
Confidence 344445566789999999999865 46777787665 7899999999999999999999999987521100111
Q ss_pred ccccc----------eeccccCccEEecCCeEEEecC
Q 000132 1276 GIGFK----------SVFRVTDAPEIHSNGFHVKFDT 1302 (2109)
Q Consensus 1276 GIGFK----------SVF~VTD~P~I~SGGYsFkFD~ 1302 (2109)
=.||. |-..|+.+..=.+.|+.+..+.
T Consensus 92 TlGFRGEAL~SIasVsrlti~Srt~~~~~~~~~~~~g 128 (638)
T COG0323 92 TLGFRGEALASIASVSRLTITSRTAEASEGTQIYAEG 128 (638)
T ss_pred ccCccHHHHHHHHhhheeEEEeecCCcCceEEEEecC
Confidence 23443 4445555533345566666653
No 36
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=53.97 E-value=11 Score=51.86 Aligned_cols=80 Identities=15% Similarity=0.144 Sum_probs=49.3
Q ss_pred hHHHHHHHhhcc---Ch-------HHHHhhhccCCCcCCcceEeeehhh--HHHHHhhccccccccccchHHHHHHHHHh
Q 000132 693 EFFTFLEKHASM---LS-------TELQKLFTDDTIDRSSLEVSLVQHL--LVVLVSQASNNLWESEIITKQMISELLRR 760 (2109)
Q Consensus 693 ~f~~fl~~h~~~---~~-------~~l~~~l~~~~~~~~~~e~~~~~~~--~~~l~~qa~~~~~~~~~~s~~~~~~l~~~ 760 (2109)
.|..+||..+-. || +++..+-..+.-+.-+..+.+.+.+ .-+||.||-.| ...+++.=+=+.|-+|
T Consensus 840 i~v~wlesR~f~pipfPpL~yk~dtkilvLalE~lk~~yt~kirln~s~rEElal~e~Aydn--phdtl~rIKk~LLTqR 917 (2365)
T COG5178 840 ITVLWLESRMFEPIPFPPLRYKEDTKILVLALEYLKSKYTGKIRLNESTREELALLEKAYDN--PHDTLFRIKKSLLTQR 917 (2365)
T ss_pred HHHHHHHhcccCCCCCCCcCCcccchhhhhhHHHHHhhccccccCChhhHHHHHHHHHHhcC--hHHHHHHHHHHHHhhh
Confidence 567788765421 22 2343333334444455556665554 56779999553 2346666677778888
Q ss_pred hcCcceEEEeccCc
Q 000132 761 QFPLISFKIEDKGS 774 (2109)
Q Consensus 761 qf~~~~~~~~~~~~ 774 (2109)
-|-.+....|+.++
T Consensus 918 ~FKeVgit~m~~y~ 931 (2365)
T COG5178 918 SFKEVGITLMRHYD 931 (2365)
T ss_pred hhhhcceeHhhhcC
Confidence 88888888887776
No 37
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=52.90 E-value=16 Score=45.20 Aligned_cols=15 Identities=40% Similarity=0.944 Sum_probs=6.9
Q ss_pred CCCCCCCCCCCCCCC
Q 000132 25 PPSQPPPPHFNPNFA 39 (2109)
Q Consensus 25 ~p~~~p~~~~~~~~~ 39 (2109)
+++.|||+-+.+.|.
T Consensus 210 ~~~~PPPPyfks~~~ 224 (318)
T PF06682_consen 210 GYPDPPPPYFKSDFP 224 (318)
T ss_pred CCCCCCCCCCcccCC
Confidence 334444455444443
No 38
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=51.38 E-value=14 Score=40.58 Aligned_cols=89 Identities=20% Similarity=0.237 Sum_probs=55.9
Q ss_pred hhhcccccccCCCCCCCCCcEEE--EEeCCe--EEEEeCCCCCCHhhHHHHHhccCccccCCCCCcccccccccceeccc
Q 000132 1210 LLELVQNADDNIYPENVEPTLTF--ILQESG--IVVLNNEQGFSAENIRALCDVGNSTKKGSSAGYIGRKGIGFKSVFRV 1285 (2109)
Q Consensus 1210 L~ELIQNADDN~Y~e~v~PtLsF--~L~dd~--LlV~NNE~GFTeeDIeAICsIG~STKkg~~~gyIGeKGIGFKSVF~V 1285 (2109)
+-|++.||-...|.......+.+ ...++. +.|..+|.||.++.+..+-.-..-.+.... . ..-|+|.-=|-.+
T Consensus 47 v~Ea~~Nai~Hg~~~~~~~~I~I~~~~~~~~l~i~V~D~G~g~d~~~~~~~~~p~~~~~~~~~-~--~~~G~GL~li~~l 123 (161)
T PRK04069 47 VSEACTNAVQHAYKEDEVGEIHIRFEIYEDRLEIVVADNGVSFDYETLKSKLGPYDISKPIED-L--REGGLGLFLIETL 123 (161)
T ss_pred HHHHHHHHHHhccCCCCCCeEEEEEEEECCEEEEEEEECCcCCChHHhccccCCCCCCCcccc-c--CCCceeHHHHHHH
Confidence 45888888887776543444544 445666 467799999987765433221111111111 1 1348898888899
Q ss_pred cCccEEec-CCeEEEec
Q 000132 1286 TDAPEIHS-NGFHVKFD 1301 (2109)
Q Consensus 1286 TD~P~I~S-GGYsFkFD 1301 (2109)
.|.+++.+ +|..+++.
T Consensus 124 ~d~v~~~~~~G~~v~~~ 140 (161)
T PRK04069 124 MDDVTVYKDSGVTVSMT 140 (161)
T ss_pred HHhEEEEcCCCcEEEEE
Confidence 99998875 66677664
No 39
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=50.71 E-value=26 Score=47.88 Aligned_cols=94 Identities=20% Similarity=0.357 Sum_probs=66.2
Q ss_pred CcchhhcccccccCCCCCCCCCcEEEEEeC-CeEEEEeCCCCCCHh--------hHHH-HHhccCccccCCCCCc---cc
Q 000132 1207 SHFLLELVQNADDNIYPENVEPTLTFILQE-SGIVVLNNEQGFSAE--------NIRA-LCDVGNSTKKGSSAGY---IG 1273 (2109)
Q Consensus 1207 tHFL~ELIQNADDN~Y~e~v~PtLsF~L~d-d~LlV~NNE~GFTee--------DIeA-ICsIG~STKkg~~~gy---IG 1273 (2109)
-|.|+|||-||=|+.-. +-...+..++.. +.+.|.+||+|...+ -++. +|....++|-++. .| -|
T Consensus 39 hhlv~EivdNaiDE~~A-G~a~~I~V~i~~dgsIsV~DnGrGIPvd~h~~~g~~~~Elvlt~lhAggKfd~~-~ykvSgG 116 (756)
T PRK14939 39 HHMVYEVVDNAIDEALA-GHCDDITVTIHADGSVSVSDNGRGIPTDIHPEEGVSAAEVIMTVLHAGGKFDQN-SYKVSGG 116 (756)
T ss_pred hhhhhHhhccccccccc-CCCCEEEEEEcCCCeEEEEEcCCcccCCcccccCCchhhheeeeecccCCCCCC-cccccCC
Confidence 38999999999994332 223578888875 468999999999765 1233 3666677776542 22 58
Q ss_pred ccccccceeccccCccEE--ecCC--eEEEecC
Q 000132 1274 RKGIGFKSVFRVTDAPEI--HSNG--FHVKFDT 1302 (2109)
Q Consensus 1274 eKGIGFKSVF~VTD~P~I--~SGG--YsFkFD~ 1302 (2109)
.-|+|=++|=.++....| .-+| |...|.+
T Consensus 117 lhGvG~svvNAlS~~l~v~v~r~gk~~~q~f~~ 149 (756)
T PRK14939 117 LHGVGVSVVNALSEWLELTIRRDGKIHEQEFEH 149 (756)
T ss_pred ccCccceEeehccCeEEEEEEeCCeEEEEEEec
Confidence 999999999888886665 3344 6777754
No 40
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=47.59 E-value=28 Score=46.32 Aligned_cols=94 Identities=22% Similarity=0.302 Sum_probs=65.5
Q ss_pred cchhhcccccccCCCCCCCCCcEEEEEeCC-eEEEEeCCCCCCHhh--------HHHHHhcc-CccccCCC--CCccccc
Q 000132 1208 HFLLELVQNADDNIYPENVEPTLTFILQES-GIVVLNNEQGFSAEN--------IRALCDVG-NSTKKGSS--AGYIGRK 1275 (2109)
Q Consensus 1208 HFL~ELIQNADDN~Y~e~v~PtLsF~L~dd-~LlV~NNE~GFTeeD--------IeAICsIG-~STKkg~~--~gyIGeK 1275 (2109)
|.|+|||=||=|+.-. +-...+.+.+.++ .+.|.+||+|...+. ++.|..+- .|+|-++. .-.-|.-
T Consensus 4 ~~v~ElvdNAiD~~~~-g~at~I~V~i~~~g~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kfd~~~~k~s~G~~ 82 (594)
T smart00433 4 HLVDEIVDNAADEALA-GYMDTIKVTIDKDNSISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFDDDAYKVSGGLH 82 (594)
T ss_pred EEEeeehhcccchhcc-CCCCEEEEEEeCCCeEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCCCCCCccccCCcc
Confidence 7899999999998632 2246788888755 789999999886532 34443332 34454431 1135999
Q ss_pred ccccceeccccCccEEecC--C--eEEEecC
Q 000132 1276 GIGFKSVFRVTDAPEIHSN--G--FHVKFDT 1302 (2109)
Q Consensus 1276 GIGFKSVF~VTD~P~I~SG--G--YsFkFD~ 1302 (2109)
|+|=++|=.++....|.+. | |...|.+
T Consensus 83 G~Gls~vnalS~~l~v~~~~~g~~~~~~~~~ 113 (594)
T smart00433 83 GVGASVVNALSTEFEVEVARDGKEYKQSFSN 113 (594)
T ss_pred cchHHHHHHhcCceEEEEEeCCcEEEEEEeC
Confidence 9999999999987777553 3 7777764
No 41
>PF11459 DUF2893: Protein of unknwon function (DUF2893); InterPro: IPR021561 This is a bacterial family of uncharacterised proteins.
Probab=47.15 E-value=11 Score=37.36 Aligned_cols=61 Identities=26% Similarity=0.339 Sum_probs=48.4
Q ss_pred ccchhhhhhccCCCCHhHHHHHHHHHhhcccccccCchhHHHHhhcch-hhhHHHHHhhcchh
Q 000132 1005 PVASRFFLDCLGYLPSEFRSFAADVLLSGLQSTIKDAPSAILLECHQT-ELRLMLHEVGLSLG 1066 (2109)
Q Consensus 1005 ~~~~rf~ld~L~~~P~ef~~~~~~vll~~l~~~~~~~~s~~l~~c~~~-~~r~~Lh~~g~~lg 1066 (2109)
+.++|=+||||..+|...----||-|..||+..-+.--..+|..|++. .-|++| .++-..|
T Consensus 1 S~PErA~LE~l~~~p~~~s~e~a~~l~egL~nLrp~~lq~LL~~C~svKvkRLfl-~lA~~~~ 62 (69)
T PF11459_consen 1 SVPERAILELLSEVPKRQSFEEADELMEGLRNLRPRVLQELLEHCTSVKVKRLFL-YLAERAG 62 (69)
T ss_pred CcHHHHHHHHHHhCCccCCHHHHHHHHHHHhhcCHHHHHHHHHHCccHHHHHHHH-HHHHHcC
Confidence 357899999999999776556699999999999999999999999998 445544 3444444
No 42
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=47.02 E-value=67 Score=42.42 Aligned_cols=15 Identities=20% Similarity=0.268 Sum_probs=6.3
Q ss_pred HHHHHHHHHhhcccc
Q 000132 285 VDEFLDFIAKKRSLA 299 (2109)
Q Consensus 285 ~~efl~~~a~~~~v~ 299 (2109)
||+|-+=+..++.-.
T Consensus 560 veAfys~pshdrpr~ 574 (757)
T KOG4368|consen 560 VEAFYSPPSHDRPRN 574 (757)
T ss_pred HHHhhccccccCCCC
Confidence 334444444444444
No 43
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=45.30 E-value=16 Score=42.08 Aligned_cols=76 Identities=24% Similarity=0.250 Sum_probs=52.2
Q ss_pred chhhcccccccCCCCCCCCCcEEEEE--eCCe--EEEEeCCCCCCHhhHHHHHhccCccccCCCCCcccccccccceecc
Q 000132 1209 FLLELVQNADDNIYPENVEPTLTFIL--QESG--IVVLNNEQGFSAENIRALCDVGNSTKKGSSAGYIGRKGIGFKSVFR 1284 (2109)
Q Consensus 1209 FL~ELIQNADDN~Y~e~v~PtLsF~L--~dd~--LlV~NNE~GFTeeDIeAICsIG~STKkg~~~gyIGeKGIGFKSVF~ 1284 (2109)
.+.+||.||-+..-. ...+.+.+ .++. +.|.+||.|++++..+.|..-.-+++.....+ .+..|+|...|-.
T Consensus 233 vl~nll~Nai~~~~~---~~~i~i~~~~~~~~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~~~~~-~~g~glGL~~~~~ 308 (333)
T TIGR02966 233 AFSNLVSNAIKYTPE---GGTITVRWRRDGGGAEFSVTDTGIGIAPEHLPRLTERFYRVDKSRSRD-TGGTGLGLAIVKH 308 (333)
T ss_pred HHHHHHHHhheeCCC---CCeEEEEEEEcCCEEEEEEEecCCCCCHHHHhhhccCceecCcccccC-CCCCcccHHHHHH
Confidence 566788888664321 23445444 3444 67889999999999999999887666543212 3457999998888
Q ss_pred ccCc
Q 000132 1285 VTDA 1288 (2109)
Q Consensus 1285 VTD~ 1288 (2109)
++..
T Consensus 309 ~~~~ 312 (333)
T TIGR02966 309 VLSR 312 (333)
T ss_pred HHHH
Confidence 7764
No 44
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=45.30 E-value=22 Score=44.04 Aligned_cols=76 Identities=24% Similarity=0.250 Sum_probs=52.2
Q ss_pred chhhcccccccCCCCCCCCCcEEEEE--eCCe--EEEEeCCCCCCHhhHHHHHhccCccccCCCCCcccccccccceecc
Q 000132 1209 FLLELVQNADDNIYPENVEPTLTFIL--QESG--IVVLNNEQGFSAENIRALCDVGNSTKKGSSAGYIGRKGIGFKSVFR 1284 (2109)
Q Consensus 1209 FL~ELIQNADDN~Y~e~v~PtLsF~L--~dd~--LlV~NNE~GFTeeDIeAICsIG~STKkg~~~gyIGeKGIGFKSVF~ 1284 (2109)
.+.+||.||=+...+ .+.+.+.+ .++. +.|.+||.|+++++.+.|.+-.-.+++... ...|..|+|..-|..
T Consensus 321 vl~NLl~NAik~~~~---~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~-~~~~G~GLGL~ivk~ 396 (430)
T PRK11006 321 AISNLVYNAVNHTPE---GTHITVRWQRVPQGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARS-RQTGGSGLGLAIVKH 396 (430)
T ss_pred HHHHHHHHHHhcCCC---CCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHhccCcccccCCCC-CCCCCCchHHHHHHH
Confidence 355677788765432 13455544 3333 678899999999999999988876665432 234668999988887
Q ss_pred ccCc
Q 000132 1285 VTDA 1288 (2109)
Q Consensus 1285 VTD~ 1288 (2109)
+...
T Consensus 397 iv~~ 400 (430)
T PRK11006 397 ALSH 400 (430)
T ss_pred HHHH
Confidence 7654
No 45
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.19 E-value=70 Score=44.08 Aligned_cols=21 Identities=24% Similarity=0.506 Sum_probs=13.8
Q ss_pred hhccchhHHHHhhhccccccccc-hh
Q 000132 669 KLCSCETWLTEQFRIKEFKSLGY-GE 693 (2109)
Q Consensus 669 ~l~~ce~~~~~~f~~~~f~~lg~-g~ 693 (2109)
-||.|++-+- -.-|.-||| |.
T Consensus 364 n~C~~~n~vp----~~yf~~L~~~gr 385 (1007)
T KOG1984|consen 364 NFCGSKNQVP----DDYFNHLGPTGR 385 (1007)
T ss_pred cCCCccccCC----hhhcccCCCccc
Confidence 4788876544 445778888 54
No 46
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=45.10 E-value=16 Score=45.75 Aligned_cols=72 Identities=25% Similarity=0.348 Sum_probs=51.7
Q ss_pred chhhcccccccCCCCCCCCCcEEEEE--eCCe--EEEEeCCCCCCHhhHHHHHhccCccccCCCCCcccccccccceecc
Q 000132 1209 FLLELVQNADDNIYPENVEPTLTFIL--QESG--IVVLNNEQGFSAENIRALCDVGNSTKKGSSAGYIGRKGIGFKSVFR 1284 (2109)
Q Consensus 1209 FL~ELIQNADDN~Y~e~v~PtLsF~L--~dd~--LlV~NNE~GFTeeDIeAICsIG~STKkg~~~gyIGeKGIGFKSVF~ 1284 (2109)
.+.+||.||=+..... ..+.+.+.+ .++. +.|.+||.|+++++.+.|.+-+.++|.. ..|+|..-|-.
T Consensus 437 vl~nLl~NAi~~~~~~-~~~~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~iF~~~~~~~~~-------g~GlGL~iv~~ 508 (542)
T PRK11086 437 ILGNLIENALEAVGGE-EGGEISVSLHYRNGWLHCEVSDDGPGIAPDEIDAIFDKGYSTKGS-------NRGVGLYLVKQ 508 (542)
T ss_pred HHHHHHHHHHHHhhcC-CCcEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHhCCCccCCC-------CCcCcHHHHHH
Confidence 4668888887754321 123455444 4444 5688999999999999999999888742 25999999888
Q ss_pred ccCc
Q 000132 1285 VTDA 1288 (2109)
Q Consensus 1285 VTD~ 1288 (2109)
+...
T Consensus 509 iv~~ 512 (542)
T PRK11086 509 SVEN 512 (542)
T ss_pred HHHH
Confidence 7663
No 47
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=44.45 E-value=27 Score=39.42 Aligned_cols=69 Identities=23% Similarity=0.313 Sum_probs=54.4
Q ss_pred cchhhcccccccCCCCCCCCCcEEEEEeCC----eEEEEeCCCCCCHhhHHHHHhccCccccCCCCCcccccccccceec
Q 000132 1208 HFLLELVQNADDNIYPENVEPTLTFILQES----GIVVLNNEQGFSAENIRALCDVGNSTKKGSSAGYIGRKGIGFKSVF 1283 (2109)
Q Consensus 1208 HFL~ELIQNADDN~Y~e~v~PtLsF~L~dd----~LlV~NNE~GFTeeDIeAICsIG~STKkg~~~gyIGeKGIGFKSVF 1283 (2109)
+.+..||.||=++.- .+.+.+.+... .+.|..||.|.+++.++.|-+-+.++|.... .-|+|..-|.
T Consensus 231 ~vl~nLi~NAi~~~~----~~~i~i~~~~~~~~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~-----g~GlGL~i~~ 301 (336)
T COG0642 231 QVLVNLLSNAIKYTP----GGEITISVRQDDEQVTISVEDTGPGIPEEELERIFEPFFRTDKSRS-----GTGLGLAIVK 301 (336)
T ss_pred HHHHHHHHHHhccCC----CCeEEEEEEecCCeEEEEEEcCCCCCCHHHHHHhccCeeccCCCCC-----CCCccHHHHH
Confidence 456789999999765 46777777644 4789999999999999999999999997532 4678887777
Q ss_pred cc
Q 000132 1284 RV 1285 (2109)
Q Consensus 1284 ~V 1285 (2109)
.+
T Consensus 302 ~~ 303 (336)
T COG0642 302 RI 303 (336)
T ss_pred HH
Confidence 73
No 48
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=40.98 E-value=28 Score=46.57 Aligned_cols=85 Identities=27% Similarity=0.280 Sum_probs=45.8
Q ss_pred ccCCCcccc---cceeeeEecccCccc-----cccccchHHHHHHHHHHHhhhccccccHHHHHHHHHhhcccccccccc
Q 000132 234 ELELGPFLR---QPLISHYFLVKSDVD-----VVFKIATNDVIVCLSEYTDTHKAKDIKVDEFLDFIAKKRSLASKEQLG 305 (2109)
Q Consensus 234 eL~lGPll~---~Plv~~~F~~~~~~~-----~v~~i~t~dii~~l~~f~~~~~~~~~~~~efl~~~a~~~~v~~~e~lg 305 (2109)
+|||| +| -+|..-||.++...+ ..++. .| +.|.+-=+.|||-+=++|+-+-.-.|
T Consensus 317 DLGLG--rKGEL~sLTeGiF~ap~~~~~~~~~~~~~~----------~~--~gkLdp~~aeeF~kRV~~~ia~~~AE--- 379 (669)
T PF08549_consen 317 DLGLG--RKGELESLTEGIFEAPGGQSGDASKEGPKK----------PY--VGKLDPGKAEEFRKRVAKKIADMNAE--- 379 (669)
T ss_pred ccCCc--cccchhhhhcccccCCCCCCccccccCCCc----------cc--ccCCCHHHHHHHHHHHHHHHHHHHHH---
Confidence 56666 23 377888999955432 22221 22 23333337888888777765544433
Q ss_pred eEEccc-cchHHHHHHHHHhhhHHHHHHHhhhCCC
Q 000132 306 VRIQNL-GMHINFIREARKSQDVTLKKFLKELQPH 339 (2109)
Q Consensus 306 vriq~l-~~~i~~i~~a~~~e~~~~k~~~~~~~~~ 339 (2109)
|..+ .-|-+-+ ||=...++||..-+.|+..
T Consensus 380 --IekmK~~Hak~m--~k~k~~s~lk~AE~~LR~a 410 (669)
T PF08549_consen 380 --IEKMKARHAKRM--AKFKRNSLLKDAEKELRDA 410 (669)
T ss_pred --HHHHHHHHHHHH--HHHhhccHHHHHHHHHHhc
Confidence 2222 2232222 3334567777777777653
No 49
>PRK03660 anti-sigma F factor; Provisional
Probab=39.71 E-value=49 Score=35.10 Aligned_cols=77 Identities=26% Similarity=0.294 Sum_probs=45.6
Q ss_pred hhhcccccccCCCCCCCCCcEEEEE--eCCe--EEEEeCCCCCCHhhHHHHHhccCccccCCCCCcccccccccceeccc
Q 000132 1210 LLELVQNADDNIYPENVEPTLTFIL--QESG--IVVLNNEQGFSAENIRALCDVGNSTKKGSSAGYIGRKGIGFKSVFRV 1285 (2109)
Q Consensus 1210 L~ELIQNADDN~Y~e~v~PtLsF~L--~dd~--LlV~NNE~GFTeeDIeAICsIG~STKkg~~~gyIGeKGIGFKSVF~V 1285 (2109)
+.||+.||=...|.......+.+.+ .++. +.|.+|+.||++ .+.+..-..+++... ++.|+|..-+-.+
T Consensus 44 l~eli~Nai~h~~~~~~~~~i~i~~~~~~~~l~i~I~D~G~g~~~--~~~~~~~~~~~~~~~-----~~~GlGL~i~~~~ 116 (146)
T PRK03660 44 VSEAVTNAIIHGYENNPDGVVYIEVEIEEEELEITVRDEGKGIED--IEEAMQPLYTTKPEL-----ERSGMGFTVMESF 116 (146)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEEEECCCEEEEEEEEccCCCCh--HHHhhCCCcccCCCC-----CCccccHHHHHHh
Confidence 3556666665445422223444443 4455 567899999975 334444444433221 3469999888888
Q ss_pred cCccEEec
Q 000132 1286 TDAPEIHS 1293 (2109)
Q Consensus 1286 TD~P~I~S 1293 (2109)
.+..++.+
T Consensus 117 ~~~i~~~~ 124 (146)
T PRK03660 117 MDEVEVES 124 (146)
T ss_pred CCeEEEEe
Confidence 88777765
No 50
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=39.48 E-value=38 Score=45.56 Aligned_cols=95 Identities=18% Similarity=0.367 Sum_probs=62.7
Q ss_pred CcchhhcccccccCCCCCCCCCcEEEEEe-CCeEEEEeCCCCCCHh--------hHHHH-HhccCccccCCCC--Ccccc
Q 000132 1207 SHFLLELVQNADDNIYPENVEPTLTFILQ-ESGIVVLNNEQGFSAE--------NIRAL-CDVGNSTKKGSSA--GYIGR 1274 (2109)
Q Consensus 1207 tHFL~ELIQNADDN~Y~e~v~PtLsF~L~-dd~LlV~NNE~GFTee--------DIeAI-CsIG~STKkg~~~--gyIGe 1274 (2109)
-|.++|+|=||=|+.-. +....+..+++ ++.+.|.+||+|.--+ -++-| +-+-.+.|-++.. -.-|.
T Consensus 36 ~hlv~EIvdNavDE~~a-g~~~~I~V~i~~dgsitV~DnGrGIPv~~h~~~~~~~~E~v~t~LhaGgkfd~~~ykvSGGl 114 (637)
T TIGR01058 36 HHLVWEIVDNSVDEVLA-GYADNITVTLHKDNSITVQDDGRGIPTGIHQDGNISTVETVFTVLHAGGKFDQGGYKTAGGL 114 (637)
T ss_pred heehhhhhcchhhhhhc-CCCcEEEEEEcCCCeEEEEECCCcccCcccCcCCCccceeEEEEecccCcCCCCcccccCCc
Confidence 48899999999997542 33456888887 4568999999988532 12222 3333455554321 11388
Q ss_pred cccccceeccccCc--cEEecCC--eEEEecC
Q 000132 1275 KGIGFKSVFRVTDA--PEIHSNG--FHVKFDT 1302 (2109)
Q Consensus 1275 KGIGFKSVF~VTD~--P~I~SGG--YsFkFD~ 1302 (2109)
-|+|=+.|=..+.. ++|+.+| |.-.|.+
T Consensus 115 hGvG~svvNAlS~~~~V~v~r~gk~~~q~f~~ 146 (637)
T TIGR01058 115 HGVGASVVNALSSWLEVTVKRDGQIYQQRFEN 146 (637)
T ss_pred ccccccccceeeceEEEEEEECCEEEEEEEec
Confidence 99999999888884 4566677 5556654
No 51
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=39.12 E-value=23 Score=43.72 Aligned_cols=75 Identities=16% Similarity=0.254 Sum_probs=49.4
Q ss_pred hhhcccccccCCCCCCCCCcEEEEE--eCCe--EEEEeCCCCCCHhhHHHHHhccCccccCCCCCcccccccccceeccc
Q 000132 1210 LLELVQNADDNIYPENVEPTLTFIL--QESG--IVVLNNEQGFSAENIRALCDVGNSTKKGSSAGYIGRKGIGFKSVFRV 1285 (2109)
Q Consensus 1210 L~ELIQNADDN~Y~e~v~PtLsF~L--~dd~--LlV~NNE~GFTeeDIeAICsIG~STKkg~~~gyIGeKGIGFKSVF~V 1285 (2109)
+.+||.||=...-+ .+.+.+.+ .++. +.|.+||.|+++++++.|..-...++.... ...|..|+|..-|-.+
T Consensus 357 l~nll~NAi~~~~~---~~~I~i~~~~~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~~~-~~~~g~GlGL~iv~~i 432 (466)
T PRK10549 357 FNNLLENSLRYTDS---GGSLHISAEQRDKTLRLTFADSAPGVSDEQLQKLFERFYRTEGSRN-RASGGSGLGLAICLNI 432 (466)
T ss_pred HHHHHHHHHHhCCC---CCEEEEEEEEcCCEEEEEEEecCCCcCHHHHHHhccCcccCCCCcC-CCCCCCcHHHHHHHHH
Confidence 34555555443211 23445444 3454 567899999999999999988776665432 3456789999888777
Q ss_pred cCc
Q 000132 1286 TDA 1288 (2109)
Q Consensus 1286 TD~ 1288 (2109)
...
T Consensus 433 ~~~ 435 (466)
T PRK10549 433 VEA 435 (466)
T ss_pred HHH
Confidence 664
No 52
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=37.85 E-value=25 Score=46.74 Aligned_cols=70 Identities=23% Similarity=0.190 Sum_probs=51.7
Q ss_pred chhhcccccccCCCCCCCCCcEEEEEe--CCe--EEEEeCCCCCCHhh-HHHHHhccCccccCCCCCcccccccccceec
Q 000132 1209 FLLELVQNADDNIYPENVEPTLTFILQ--ESG--IVVLNNEQGFSAEN-IRALCDVGNSTKKGSSAGYIGRKGIGFKSVF 1283 (2109)
Q Consensus 1209 FL~ELIQNADDN~Y~e~v~PtLsF~L~--dd~--LlV~NNE~GFTeeD-IeAICsIG~STKkg~~~gyIGeKGIGFKSVF 1283 (2109)
.+.+||+||=+...+. +.+++.+. ++. |.|.+||.|++++. .+.|-+-..++|. +..|||-..|-
T Consensus 583 vl~nLl~NAik~~~~~---~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~~-------~G~GLGL~i~~ 652 (679)
T TIGR02916 583 VLGHLVQNALEATPGE---GRVAIRVERECGAARIEIEDSGCGMSPAFIRERLFKPFDTTKG-------AGMGIGVYECR 652 (679)
T ss_pred HHHHHHHHHHHhCCCC---CcEEEEEEEcCCEEEEEEEEcCCCcChHHHHHhcCCCCCCCCC-------CCcchhHHHHH
Confidence 6678999998865332 34555554 554 56889999999999 8888888887774 33689998888
Q ss_pred cccCc
Q 000132 1284 RVTDA 1288 (2109)
Q Consensus 1284 ~VTD~ 1288 (2109)
.+...
T Consensus 653 ~iv~~ 657 (679)
T TIGR02916 653 QYVEE 657 (679)
T ss_pred HHHHH
Confidence 87653
No 53
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.68 E-value=2.1e+02 Score=39.65 Aligned_cols=18 Identities=11% Similarity=0.217 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhhccCcCC
Q 000132 1156 EDAALIVESIRRDEFGLG 1173 (2109)
Q Consensus 1156 edAr~~IE~IRr~~fgIg 1173 (2109)
+..+++|+++|.++....
T Consensus 825 ~r~~~fI~~lR~d~~~~p 842 (887)
T KOG1985|consen 825 DRVRRFIKKLRDDRTYFP 842 (887)
T ss_pred HHHHHHHHHhhcCCcccc
Confidence 557789999997765443
No 54
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=37.62 E-value=33 Score=44.98 Aligned_cols=62 Identities=26% Similarity=0.433 Sum_probs=44.5
Q ss_pred hcccccccCCCCCCCCCcEEEEEeC--Ce--EEEEeCCCCCCHhhHHHHHhccCccccCCCCCccccccccc
Q 000132 1212 ELVQNADDNIYPENVEPTLTFILQE--SG--IVVLNNEQGFSAENIRALCDVGNSTKKGSSAGYIGRKGIGF 1279 (2109)
Q Consensus 1212 ELIQNADDN~Y~e~v~PtLsF~L~d--d~--LlV~NNE~GFTeeDIeAICsIG~STKkg~~~gyIGeKGIGF 1279 (2109)
-||-||=||.-.....-++.+.+++ +. +.|..||.|-.++-.+.|-+-|-|||. .|+-|||-
T Consensus 434 NLidNA~eA~~~~~~~k~I~l~i~~~~~~lvieV~D~G~GI~~~~~~~iFe~G~Stk~------~~~rGiGL 499 (537)
T COG3290 434 NLIDNALEALLAPEENKEIELSLSDRGDELVIEVADTGPGIPPEVRDKIFEKGVSTKN------TGGRGIGL 499 (537)
T ss_pred HHHHHHHHHhhccCCCcEEEEEEEecCCEEEEEEeCCCCCCChHHHHHHHhcCccccC------CCCCchhH
Confidence 4667777776532222356666654 43 458899999999999999999999996 35567775
No 55
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=37.41 E-value=42 Score=35.26 Aligned_cols=77 Identities=25% Similarity=0.306 Sum_probs=43.9
Q ss_pred hhhcccccccCCCCCCCCCcEEEEE--eCCe--EEEEeCCCCCCHhhHHHHHhccCccccCCCCCcccccccccceeccc
Q 000132 1210 LLELVQNADDNIYPENVEPTLTFIL--QESG--IVVLNNEQGFSAENIRALCDVGNSTKKGSSAGYIGRKGIGFKSVFRV 1285 (2109)
Q Consensus 1210 L~ELIQNADDN~Y~e~v~PtLsF~L--~dd~--LlV~NNE~GFTeeDIeAICsIG~STKkg~~~gyIGeKGIGFKSVF~V 1285 (2109)
+.||+.||=...|.....+.+.+.+ .++. +.|.+|+.||. +.+.+..-.-+++.. -+..|+|..=|..+
T Consensus 44 l~eli~Nai~h~~~~~~~~~I~v~~~~~~~~~~i~I~D~G~gi~--~~~~~~~~~~~~~~~-----~~~~GlGL~lv~~~ 116 (137)
T TIGR01925 44 VSEAVTNAIIHGYEENCEGVVYISATIEDHEVYITVRDEGIGIE--NLEEAREPLYTSKPE-----LERSGMGFTVMENF 116 (137)
T ss_pred HHHHHHHHHHhccCCCCCcEEEEEEEEeCCEEEEEEEEcCCCcC--chhHhhCCCcccCCC-----CCCCcccHHHHHHh
Confidence 4566666654344322234455544 4555 45779999997 355555444444421 24578888767666
Q ss_pred cCccEEec
Q 000132 1286 TDAPEIHS 1293 (2109)
Q Consensus 1286 TD~P~I~S 1293 (2109)
.+..++.+
T Consensus 117 ~~~l~~~~ 124 (137)
T TIGR01925 117 MDDVSVDS 124 (137)
T ss_pred CCcEEEEE
Confidence 66666654
No 56
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=37.22 E-value=1.8e+02 Score=37.55 Aligned_cols=152 Identities=22% Similarity=0.230 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCC------CCCCCCCCCCCC----CCCCC-------CCCCCCCCC-CCCCCCCC----CChhHHhhhcc
Q 000132 1 MYGNHRPRFRPVG------GVGGEGTGGGQP----PSQPP-------PPHFNPNFA-FQNPNIFF----PNPALQLLQNL 58 (2109)
Q Consensus 1 ~~~~~~~~~~~~~------~~~~~~~~gg~~----p~~~p-------~~~~~~~~~-~~~p~~~~----~n~~~~~~~~~ 58 (2109)
|-+||+|..-+-- -|||-..+.+.+ |+++| ++...| ++ ..+.-.=+ |-++=.++-++
T Consensus 267 ~~~~~pp~~~~~~~~~~~q~g~g~a~~r~~~n~~rPt~pPP~ppl~~~~g~~p-~as~~s~p~~~~d~lppPpp~~~~~s 345 (518)
T KOG1830|consen 267 MTMHHPPQPPVMPHASQGQRGGGLASARPSSNVVRPTQPPPPPPLDSPPGPDP-TASIPSTPPDPRDDLPPPPPPLLMNS 345 (518)
T ss_pred CCCCCCCCCCccccccccccCCcccCcCCCcCCCCCCCCCCCCCCCCCCCCCC-cCCCCCCCCCCccCCCCCCCcccccC
Q ss_pred CCCCCCCCCCccCCCccccccCCCCCCCCCCC--C----------CCCCCCccccc-cccCCCCCCCCCCCCCCCCCCCC
Q 000132 59 TNIPFQNPNFDIQNPNLFMQNANLLTQNPNLP--P----------QQPPSSACNQQ-RSQTQHPPGASNQQRPLTQQPQS 125 (2109)
Q Consensus 59 ~~~~~~~~~~~~~~p~~~~~n~~~p~~~~~~~--~----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 125 (2109)
|.-|..-+--++ +..-.++++.|++.+..+ + +.|.+++.+.. ++..+|+++++.+..++++-.+.
T Consensus 346 p~~pppp~pp~~--~p~~~~~a~pp~~~pl~~~~p~~a~~~~~~pphp~p~~~~~~sppPppppppppg~~~~p~~i~p~ 423 (518)
T KOG1830|consen 346 PIVPPPPSPPST--IPFVEPAAPPPTNPPLCNPFPSIAMTSFLCPPHPLPQGAFFGSPPPPPPPPPPPGPKLPPSVICPS 423 (518)
T ss_pred CCCCCCCCCCCC--CCCcccCCCCCCCCCCCCCCccccccccCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCcccCCC
Q ss_pred CCC------CCcCCcHHHHH---HHHHHHHHHHHHHHHc
Q 000132 126 LPP------QPQKLNKEFLE---RIDRAVVKARSELIMA 155 (2109)
Q Consensus 126 ~~~------~~~~~~~~~~~---~~~~a~~k~r~~~~~~ 155 (2109)
..- .++.++-.+.. .+.-++.-||.+|++|
T Consensus 424 ~S~a~g~p~~~P~~p~~~~~~~~~~lP~~sDaRsdLL~a 462 (518)
T KOG1830|consen 424 GSLAKGAPMLPPSAPVSEAKRPKPVLPPISDARSDLLAA 462 (518)
T ss_pred ccCCCCCCcCCCCCCchhccCCCCCCCCCCchHHHHHHH
No 57
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=35.76 E-value=45 Score=40.85 Aligned_cols=76 Identities=21% Similarity=0.217 Sum_probs=50.3
Q ss_pred chhhcccccccCCCCCCCCCcEEEEEeC--C--eEEEEeCCCCCCHhhHHHHHhccCccccCCCCCcccccccccceecc
Q 000132 1209 FLLELVQNADDNIYPENVEPTLTFILQE--S--GIVVLNNEQGFSAENIRALCDVGNSTKKGSSAGYIGRKGIGFKSVFR 1284 (2109)
Q Consensus 1209 FL~ELIQNADDN~Y~e~v~PtLsF~L~d--d--~LlV~NNE~GFTeeDIeAICsIG~STKkg~~~gyIGeKGIGFKSVF~ 1284 (2109)
.+.|||.||=+.... ...+.+.+.. + .|.|.+||.||+++....|-.-+-.++.... .+-+.-|+|=.-|-.
T Consensus 357 ~~~nll~Nai~~~~~---~~~I~i~~~~~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~~~-~~~~g~GlGL~i~~~ 432 (457)
T TIGR01386 357 AISNLLSNALRHTPD---GGTITVRIERRSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDPARS-NSGEGTGLGLAIVRS 432 (457)
T ss_pred HHHHHHHHHHHcCCC---CceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhccccccCCcccC-CCCCCccccHHHHHH
Confidence 466777777654322 2345665543 3 3678899999999999988877766655432 223557888887777
Q ss_pred ccCc
Q 000132 1285 VTDA 1288 (2109)
Q Consensus 1285 VTD~ 1288 (2109)
+.+.
T Consensus 433 ~~~~ 436 (457)
T TIGR01386 433 IMEA 436 (457)
T ss_pred HHHH
Confidence 6664
No 58
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=35.09 E-value=2.9e+02 Score=34.97 Aligned_cols=19 Identities=21% Similarity=0.186 Sum_probs=14.3
Q ss_pred ccccchhhhhhHHHhhcCC
Q 000132 211 RQITSLYDLEEAICKSEGI 229 (2109)
Q Consensus 211 r~i~tlydl~~~ic~~~~~ 229 (2109)
||=+.+|-||-+|+.-|.+
T Consensus 413 RCrvLissL~dcLhgiesk 431 (498)
T KOG4849|consen 413 RCRVLISSLEDCLHGIESK 431 (498)
T ss_pred HHHHHHHHHHHHHhhhhcc
Confidence 6667788888888776654
No 59
>PRK10364 sensor protein ZraS; Provisional
Probab=33.47 E-value=44 Score=41.82 Aligned_cols=69 Identities=25% Similarity=0.361 Sum_probs=49.3
Q ss_pred hhhcccccccCCCCCCCCCcEEEEE--eCCe--EEEEeCCCCCCHhhHHHHHhccCccccCCCCCcccccccccceeccc
Q 000132 1210 LLELVQNADDNIYPENVEPTLTFIL--QESG--IVVLNNEQGFSAENIRALCDVGNSTKKGSSAGYIGRKGIGFKSVFRV 1285 (2109)
Q Consensus 1210 L~ELIQNADDN~Y~e~v~PtLsF~L--~dd~--LlV~NNE~GFTeeDIeAICsIG~STKkg~~~gyIGeKGIGFKSVF~V 1285 (2109)
+..||.||=++.-. .+.+.+.+ .++. +.|.+||.|+.+++.+.|.+-+-++|.+ .-|+|-.-|-.+
T Consensus 353 l~NLl~NA~k~~~~---~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~k~~-------g~GlGL~iv~~~ 422 (457)
T PRK10364 353 LLNLYLNAIQAIGQ---HGVISVTASESGAGVKISVTDSGKGIAADQLEAIFTPYFTTKAE-------GTGLGLAVVHNI 422 (457)
T ss_pred HHHHHHHHHHhcCC---CCeEEEEEEEeCCeEEEEEEECCCCCCHHHHHHHhCccccCCCC-------CCcccHHHHHHH
Confidence 45677788775322 23455544 4444 6788999999999999999999888742 258998887776
Q ss_pred cCc
Q 000132 1286 TDA 1288 (2109)
Q Consensus 1286 TD~ 1288 (2109)
...
T Consensus 423 v~~ 425 (457)
T PRK10364 423 VEQ 425 (457)
T ss_pred HHH
Confidence 653
No 60
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=33.33 E-value=19 Score=46.02 Aligned_cols=27 Identities=30% Similarity=0.749 Sum_probs=23.3
Q ss_pred chhhhHHh-----hhhhcchh--hHHHHHHHhhh
Q 000132 569 IGLLNIAV-----TSIKRGMW--DSVYDTLQAIT 595 (2109)
Q Consensus 569 ~gllnvav-----~~~~~gm~--dsiyd~~~~~~ 595 (2109)
-|+|||+. ++||+||+ +||+++|+.-.
T Consensus 393 aGFlNVpKIKGTHtAMKSGmlAAesif~ai~~~~ 426 (621)
T KOG2415|consen 393 AGFLNVPKIKGTHTAMKSGMLAAESIFEAIKGLP 426 (621)
T ss_pred cccccccccccchhhhhcchhHHHHHHHHHhcCc
Confidence 48999986 79999998 79999998744
No 61
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=33.06 E-value=1.5e+02 Score=42.35 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=14.5
Q ss_pred chhhhHHHHHHHHHHhhcccHHH
Q 000132 513 SNESMRMFITTWKEACKNNTMSE 535 (2109)
Q Consensus 513 s~~~~~~fittwk~ac~e~~~~~ 535 (2109)
+++.|-.|-..=|+.|+.+.+..
T Consensus 338 ~~~e~a~fc~~vkklr~r~~~~d 360 (1639)
T KOG0905|consen 338 SNEELAAFCHMVKKLRKRYPIRD 360 (1639)
T ss_pred cchhHHHHHHHHHHHHhcCcccc
Confidence 35666667666666666666555
No 62
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=32.46 E-value=34 Score=50.10 Aligned_cols=8 Identities=50% Similarity=0.729 Sum_probs=4.7
Q ss_pred HHhhcccc
Q 000132 433 LKRLGLKG 440 (2109)
Q Consensus 433 ~~rlg~~~ 440 (2109)
..|||++-
T Consensus 1945 ~gRLGLR~ 1952 (2039)
T PRK15319 1945 TTRLGLRV 1952 (2039)
T ss_pred EEEEEEEE
Confidence 35666664
No 63
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=30.49 E-value=47 Score=40.68 Aligned_cols=75 Identities=17% Similarity=0.214 Sum_probs=52.7
Q ss_pred chhhcccccccCCCCCCC-CCcEEEEE--eCCe--EEEEeCCCCCCHhhHHHHHhccCccccCCCCCcccccccccceec
Q 000132 1209 FLLELVQNADDNIYPENV-EPTLTFIL--QESG--IVVLNNEQGFSAENIRALCDVGNSTKKGSSAGYIGRKGIGFKSVF 1283 (2109)
Q Consensus 1209 FL~ELIQNADDN~Y~e~v-~PtLsF~L--~dd~--LlV~NNE~GFTeeDIeAICsIG~STKkg~~~gyIGeKGIGFKSVF 1283 (2109)
.+.+||-||-+.....+. .+.+.+.+ .++. +.|..||.|++++..+.|-+-..++|... .+--|||---|-
T Consensus 391 vl~Nl~~NAik~~~~~~~~~~~i~i~~~~~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~~----~~G~GlGL~i~~ 466 (494)
T TIGR02938 391 LFKALVDNAIEAMNIKGWKRRELSITTALNGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGGS----RKHIGMGLSVAQ 466 (494)
T ss_pred HHHHHHHHHHHHhhccCCCcceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCCC----CCCCcccHHHHH
Confidence 566788888876544321 23455443 3344 67889999999999999999998888653 233788887777
Q ss_pred cccC
Q 000132 1284 RVTD 1287 (2109)
Q Consensus 1284 ~VTD 1287 (2109)
.+.+
T Consensus 467 ~iv~ 470 (494)
T TIGR02938 467 EIVA 470 (494)
T ss_pred HHHH
Confidence 7665
No 64
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=29.55 E-value=39 Score=41.52 Aligned_cols=75 Identities=20% Similarity=0.174 Sum_probs=50.3
Q ss_pred chhhcccccccCCCCCCCCCcEEEEEe--CCe--EEEEeCCCCCCHhhHHHHHhccCccccCCCCCcccccccccceecc
Q 000132 1209 FLLELVQNADDNIYPENVEPTLTFILQ--ESG--IVVLNNEQGFSAENIRALCDVGNSTKKGSSAGYIGRKGIGFKSVFR 1284 (2109)
Q Consensus 1209 FL~ELIQNADDN~Y~e~v~PtLsF~L~--dd~--LlV~NNE~GFTeeDIeAICsIG~STKkg~~~gyIGeKGIGFKSVF~ 1284 (2109)
.+.+||.||=....+ .+.+.+.+. ++. |.|.+||.||++++++.|.+-..+++.... . -+..|+|-.-|..
T Consensus 372 vl~nli~Na~~~~~~---~~~i~i~~~~~~~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~~~-~-~~~~GlGL~i~~~ 446 (475)
T PRK11100 372 ALGNLLDNAIDFSPE---GGTITLSAEVDGEQVALSVEDQGPGIPDYALPRIFERFYSLPRPAN-G-RKSTGLGLAFVRE 446 (475)
T ss_pred HHHHHHHHHHHhCCC---CCEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHHHHccCCCCCC-C-CCCcchhHHHHHH
Confidence 345666676543221 234555553 444 678899999999999999998887765321 2 2457999999888
Q ss_pred ccCc
Q 000132 1285 VTDA 1288 (2109)
Q Consensus 1285 VTD~ 1288 (2109)
+...
T Consensus 447 ~~~~ 450 (475)
T PRK11100 447 VARL 450 (475)
T ss_pred HHHH
Confidence 7653
No 65
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=27.99 E-value=44 Score=40.11 Aligned_cols=72 Identities=26% Similarity=0.412 Sum_probs=45.8
Q ss_pred chhhcccccccCCCCCCCCCcEEEEE--eCCe--EEEEeCCCCCCHhhHHHHHhccCccccCCCCCcccccccccceecc
Q 000132 1209 FLLELVQNADDNIYPENVEPTLTFIL--QESG--IVVLNNEQGFSAENIRALCDVGNSTKKGSSAGYIGRKGIGFKSVFR 1284 (2109)
Q Consensus 1209 FL~ELIQNADDN~Y~e~v~PtLsF~L--~dd~--LlV~NNE~GFTeeDIeAICsIG~STKkg~~~gyIGeKGIGFKSVF~ 1284 (2109)
.+..||.||=. |... .+.+.+.+ .++. +.|.+||.|+++++.+.|.+.+...+.+ -|..|+|-.-|-.
T Consensus 251 il~nLi~NA~k--~~~~-~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~-----~~g~GlGL~i~~~ 322 (356)
T PRK10755 251 LLRNLVENAHR--YSPE-GSTITIKLSQEDGGAVLAVEDEGPGIDESKCGELSKAFVRMDSR-----YGGIGLGLSIVSR 322 (356)
T ss_pred HHHHHHHHHHh--hCCC-CCcEEEEEEEcCCEEEEEEEECCCCCCHHHHHHhCCCeEeCCCC-----CCCcCHHHHHHHH
Confidence 34455556533 2211 23455544 3443 6788999999999999998887643321 2447899887777
Q ss_pred ccCc
Q 000132 1285 VTDA 1288 (2109)
Q Consensus 1285 VTD~ 1288 (2109)
+.+.
T Consensus 323 i~~~ 326 (356)
T PRK10755 323 ITQL 326 (356)
T ss_pred HHHH
Confidence 6664
No 66
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=27.63 E-value=47 Score=44.11 Aligned_cols=57 Identities=26% Similarity=0.281 Sum_probs=44.8
Q ss_pred chhhcccccccCCCCCCCCCcEEEEEeCC--e--EEEEeCCCCCCHhhHHHHHhccCccccC
Q 000132 1209 FLLELVQNADDNIYPENVEPTLTFILQES--G--IVVLNNEQGFSAENIRALCDVGNSTKKG 1266 (2109)
Q Consensus 1209 FL~ELIQNADDN~Y~e~v~PtLsF~L~dd--~--LlV~NNE~GFTeeDIeAICsIG~STKkg 1266 (2109)
.+--|||||=|+.-. ...|.+.+.+... . |.|..||.|+-++=...+-+==..||..
T Consensus 501 VLvNLl~NALDA~~~-~~~~~i~i~~~~~~~~v~l~VrDnGpGi~~e~~~~lFePF~TtK~~ 561 (603)
T COG4191 501 VLVNLLQNALDAMAG-QEDRRLSIRAQREGGQVVLTVRDNGPGIAPEALPHLFEPFFTTKPV 561 (603)
T ss_pred HHHHHHHHHHHHhcC-CCCCeeEEEEEecCCeEEEEEccCCCCCCHHHHHhhcCCccccCcc
Confidence 344589999999765 3457788877533 3 5688999999999999999988889863
No 67
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=27.10 E-value=2.1e+02 Score=39.01 Aligned_cols=109 Identities=19% Similarity=0.190 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCC-------CCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCChhHHhhhccCCCCCCCCCCccCCCccccc
Q 000132 7 PRFRPVGGVGGE-------GTGGGQPPSQPPPPHFNPNFAFQNPNI-FFPNPALQLLQNLTNIPFQNPNFDIQNPNLFMQ 78 (2109)
Q Consensus 7 ~~~~~~~~~~~~-------~~~gg~~p~~~p~~~~~~~~~~~~p~~-~~~n~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 78 (2109)
|+.+++|+.+.- |..+|+||++. +.+|++ +-|.+ |+|-.|.|---+..---..+++
T Consensus 223 p~k~ygg~~eav~~p~p~qg~~~g~pppp~----------p~s~~aqs~ps~------qspt~~q~s~y~ssPs~g~~~~ 286 (1034)
T KOG0608|consen 223 PPKYYGGTEEAVRPPHPIQGYRYGMPPPPY----------PMSPNAQSSPSR------QSPTPPQQSAYDSSPSNGRGTP 286 (1034)
T ss_pred CCCCCCCCcccccCCcCcccccCCCCCCCC----------CCCcccccCccc------CCCCCCCccccccCCCCCCcCC
Q ss_pred cCC---CCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCcCC
Q 000132 79 NAN---LLTQNPNLPPQQPPSSACNQQRSQTQHPPGASNQQRPLTQQPQSLPPQPQKL 133 (2109)
Q Consensus 79 n~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (2109)
+.- .||-.+..+++ +|-+.+..+++---....+.+ |.+..|++++|++.|..+
T Consensus 287 ~~tg~v~pppa~~~~p~-~pv~ka~~~~p~~lq~~ks~a-q~~~~~s~p~p~~~~s~n 342 (1034)
T KOG0608|consen 287 VGTGTVSPPPATHLHPP-HPVVKAPGPNPTMLQHNKSMA-QKPVLQSPPQPPPAPSRN 342 (1034)
T ss_pred CcCCccCCCCcccCCCC-CccccCCCCCchHhhhcccch-hccccCCCCCCCCCCccc
No 68
>PRK10604 sensor protein RstB; Provisional
Probab=26.15 E-value=67 Score=40.26 Aligned_cols=58 Identities=16% Similarity=0.265 Sum_probs=39.9
Q ss_pred EEEEEeCCe--EEEEeCCCCCCHhhHHHHHhccCccccCCCCCcccccccccceeccccCc
Q 000132 1230 LTFILQESG--IVVLNNEQGFSAENIRALCDVGNSTKKGSSAGYIGRKGIGFKSVFRVTDA 1288 (2109)
Q Consensus 1230 LsF~L~dd~--LlV~NNE~GFTeeDIeAICsIG~STKkg~~~gyIGeKGIGFKSVF~VTD~ 1288 (2109)
++....++. |.|.+||.|+++++.+.|..-.-....+.. ...|..|+|..-|-.+.+.
T Consensus 341 I~~~~~~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~~~~-~~~~g~GLGL~ivk~i~~~ 400 (433)
T PRK10604 341 VSLLLDGNQACLIVEDDGPGIPPEERERVFEPFVRLDPSRD-RATGGCGLGLAIVHSIALA 400 (433)
T ss_pred EEEEEECCEEEEEEEEcCCCCCHHHHhhcCCCCccCCCCCC-CCCCCccchHHHHHHHHHH
Confidence 444445555 568899999999999999887655443321 2235679999877776653
No 69
>PHA03247 large tegument protein UL36; Provisional
Probab=25.59 E-value=4.3e+02 Score=41.24 Aligned_cols=7 Identities=0% Similarity=0.202 Sum_probs=2.9
Q ss_pred cHHHHHH
Q 000132 634 QVEEVMK 640 (2109)
Q Consensus 634 ~~~~v~~ 640 (2109)
..+.++.
T Consensus 3093 ~a~~~l~ 3099 (3151)
T PHA03247 3093 SANAALS 3099 (3151)
T ss_pred chhhHHH
Confidence 3444443
No 70
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=23.15 E-value=88 Score=38.59 Aligned_cols=75 Identities=19% Similarity=0.244 Sum_probs=46.3
Q ss_pred chhhcccccccCCCCCCCCCcEEEEEeCCe--EEEEeCCCCCCHhhHHHHHhccCccccCCCCCcccccccccceecccc
Q 000132 1209 FLLELVQNADDNIYPENVEPTLTFILQESG--IVVLNNEQGFSAENIRALCDVGNSTKKGSSAGYIGRKGIGFKSVFRVT 1286 (2109)
Q Consensus 1209 FL~ELIQNADDN~Y~e~v~PtLsF~L~dd~--LlV~NNE~GFTeeDIeAICsIG~STKkg~~~gyIGeKGIGFKSVF~VT 1286 (2109)
.+.+||.||=.. ..+ .-.+.....++. +.|.+||.|+++++.+.|-+-.-+++.... ..-|..|||..-|=.+.
T Consensus 357 ~l~nli~NA~~~--~~~-~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~-~~~~g~GlGL~iv~~~v 432 (461)
T PRK09470 357 ALENIVRNALRY--SHT-KIEVAFSVDKDGLTITVDDDGPGVPEEEREQIFRPFYRVDEARD-RESGGTGLGLAIVENAI 432 (461)
T ss_pred HHHHHHHHHHHh--CCC-cEEEEEEEECCEEEEEEEECCCCCCHHHHHHhcCCCccCCcccC-CCCCCcchhHHHHHHHH
Confidence 344567776643 221 123444445555 568899999999999998876665554322 22356799987766554
Q ss_pred C
Q 000132 1287 D 1287 (2109)
Q Consensus 1287 D 1287 (2109)
.
T Consensus 433 ~ 433 (461)
T PRK09470 433 Q 433 (461)
T ss_pred H
Confidence 4
No 71
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.70 E-value=3.6e+02 Score=37.61 Aligned_cols=12 Identities=8% Similarity=0.224 Sum_probs=7.0
Q ss_pred ccchhHHHHHHH
Q 000132 1880 CGLVKWRKFFKE 1891 (2109)
Q Consensus 1880 ~~~~sWr~wl~e 1891 (2109)
.+..++++||++
T Consensus 869 ~~~~SY~efLq~ 880 (887)
T KOG1985|consen 869 ENSPSYYEFLQH 880 (887)
T ss_pred cCcHHHHHHHHH
Confidence 345566666664
No 72
>KOG1076 consensus Translation initiation factor 3, subunit c (eIF-3c) [Translation, ribosomal structure and biogenesis]
Probab=22.37 E-value=2.6e+02 Score=38.33 Aligned_cols=55 Identities=24% Similarity=0.226 Sum_probs=29.9
Q ss_pred EeecCCCCCCCCCccccccccCCccCccC-----CCCCcCCCcccCCCCCChHHHHHhhc
Q 000132 383 RFVSSSSEDEDSDDCTYECSNDISSNVQL-----PSQIKGSDRVSSCPYPSVTEELKRLG 437 (2109)
Q Consensus 383 ~f~s~~se~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~sscpyps~~ee~~rlg 437 (2109)
||-++.||++++.|++.|++.+.++++.+ ......++||..----+.-|||+-.+
T Consensus 3 rFf~~~sese~essse~ee~~~~n~~~~s~~~~~~d~e~d~krvv~~~kdkrfee~~~~i 62 (843)
T KOG1076|consen 3 RFFTQGSESESESSSEEEEVEEENSNKLSELDDSEDDEEDTKRVVRAAKDKRFEELTNII 62 (843)
T ss_pred cccccCcccccccchhhhhhhccccccccccccccccchhhhhhhcccccccHHHHhhhH
Confidence 67777777777777766655555333211 11134445555555555555555443
No 73
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=22.16 E-value=2e+02 Score=37.75 Aligned_cols=116 Identities=18% Similarity=0.207 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhHHhhhccCCCCCCCCCCccCCCccccccC
Q 000132 1 MYGNHRPRFRPVGGVGGEGTGGGQPPSQPPPPHFNPNFAFQNPNIFFPNPALQLLQNLTNIPFQNPNFDIQNPNLFMQNA 80 (2109)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~gg~~p~~~p~~~~~~~~~~~~p~~~~~n~~~~~~~~~~~~~~~~~~~~~~~p~~~~~n~ 80 (2109)
+|| .+|-+-|.+..+..+.|-|+++.++.+....|...++ |+.|-+.. |.+...++-+
T Consensus 394 ~~~-~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-p~~~~~~~--------------------~~~~~~~~~~ 451 (562)
T TIGR01628 394 AMG-QPPYYGQGPQQQFNGQPLGWPRMSMMPTPMGPGGPLR-PNGLAPMN--------------------AVRAPSRNAQ 451 (562)
T ss_pred ccc-CCCccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCC--------------------cCCCCCcccc
Q ss_pred CCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCcCCcHHHH
Q 000132 81 NLLTQNPNLPPQQPPSSACNQQRSQTQHPPGASNQQRPLTQQPQSLPPQPQKLNKEFL 138 (2109)
Q Consensus 81 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (2109)
+.+++.|+.++..||+-...+..++.|.++++..++.+.+-.++....-++...|+.|
T Consensus 452 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~p~~q~~~l 509 (562)
T TIGR01628 452 NAAQKPPMQPVMYPPNYQSLPLSQDLPQPQSTASQGGQNKKLAQVLASATPQMQKQVL 509 (562)
T ss_pred cccccccCCCcCCCccccCCCCCcccccccCCccccccchhHHHHHhhCCHHHHHHHH
No 74
>KOG2045 consensus 5'-3' exonuclease XRN1/KEM1/SEP1 involved in DNA strand exchange and mRNA turnover [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=21.64 E-value=1.5e+02 Score=41.29 Aligned_cols=104 Identities=25% Similarity=0.197 Sum_probs=50.0
Q ss_pred HHhhhc-cCCCCCCCCCCccCCCcccccc-CC------------CCCCCCCCCCCCC-CCCccccccccCCCCCCCCCCC
Q 000132 52 LQLLQN-LTNIPFQNPNFDIQNPNLFMQN-AN------------LLTQNPNLPPQQP-PSSACNQQRSQTQHPPGASNQQ 116 (2109)
Q Consensus 52 ~~~~~~-~~~~~~~~~~~~~~~p~~~~~n-~~------------~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 116 (2109)
|++.|| .-.+|=|+||+|. |-.|||- .. +|...||+.+.-| -||.-..+|-..|.-..-.+||
T Consensus 1320 f~~~~~q~~~~~g~~~n~P~--PP~p~~~~~~~~p~~~~va~~g~~~N~pp~~~~HP~~~hp~~~Hq~p~~~~~~~~~PP 1397 (1493)
T KOG2045|consen 1320 FALMQQQRAPFPGQMPNLPK--PPLPWQQEAQKQPALQQVAQTGAALNQPPLEWVHPRMQHPNAFHQGPNQLTEINNAPP 1397 (1493)
T ss_pred HHHHHhhcCCCCcccCCCCC--CCCchhhccCCCcchhhhhhhcccccCCCccccCcCcCCCCccccCCcccccccCCCC
Confidence 666655 4567778888887 6666322 11 2333334332111 2333333333334444445666
Q ss_pred CCCCCCCCCCCCC--CcCCcHHHHHHHHHHHHHHHHHHHHccCccchhHHHH
Q 000132 117 RPLTQQPQSLPPQ--PQKLNKEFLERIDRAVVKARSELIMAGESVSSWKVSR 166 (2109)
Q Consensus 117 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~k~r~~~~~~ge~V~~~kv~~ 166 (2109)
.-+++|-+.|+-+ |++. .|.| -|-|.++.+-++-+.-|++|
T Consensus 1398 ~~~~~~~~~~~~~~~p~~~-----n~~~----~~~r~~v~~~ks~~~~kf~~ 1440 (1493)
T KOG2045|consen 1398 RYSTIQDFVPIQAYRPKKL-----NRVQ----PAGRQDVDATKSPSRSKFLQ 1440 (1493)
T ss_pred CCccccCCCcccCCCCccc-----cccC----cccceeeccccCcccchhhc
Confidence 6677765444432 2222 2222 23344555566655555554
No 75
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=21.61 E-value=70 Score=38.12 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=33.6
Q ss_pred EEEEeCCCCCCHhhHHHHHhccCccccCCCCCcccccccccceeccccC
Q 000132 1239 IVVLNNEQGFSAENIRALCDVGNSTKKGSSAGYIGRKGIGFKSVFRVTD 1287 (2109)
Q Consensus 1239 LlV~NNE~GFTeeDIeAICsIG~STKkg~~~gyIGeKGIGFKSVF~VTD 1287 (2109)
+.|.+||.|+++++.+.|-.-+-++|. +..|+|..-|-.+..
T Consensus 283 i~v~D~G~Gi~~~~~~~iF~~~~~~~~-------~g~GlGL~i~~~iv~ 324 (348)
T PRK11073 283 IDIEDNGPGIPPHLQDTLFYPMVSGRE-------GGTGLGLSIARNLID 324 (348)
T ss_pred EEEEeCCCCCCHHHHhhccCCcccCCC-------CCccCCHHHHHHHHH
Confidence 678899999999999998877766663 236899988877765
No 76
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=21.55 E-value=80 Score=35.03 Aligned_cols=88 Identities=17% Similarity=0.268 Sum_probs=52.2
Q ss_pred hhhcccccccCCCCCCCCCc--EEEEEeCCeE--EEEeCCCCCCHhhHHHHHhccCccccCCCCCcccccccccceeccc
Q 000132 1210 LLELVQNADDNIYPENVEPT--LTFILQESGI--VVLNNEQGFSAENIRALCDVGNSTKKGSSAGYIGRKGIGFKSVFRV 1285 (2109)
Q Consensus 1210 L~ELIQNADDN~Y~e~v~Pt--LsF~L~dd~L--lV~NNE~GFTeeDIeAICsIG~STKkg~~~gyIGeKGIGFKSVF~V 1285 (2109)
+-|++.||=-..|..+..+. +.+...++.+ .|..++.||..+.+.....-....+.... . ..-|.|.-=|=.+
T Consensus 47 v~Ea~~Nai~ha~~~~~~~~I~I~~~~~~~~l~i~V~D~G~gfd~~~~~~~~~~~~~~~~~~~-~--~~~G~GL~Li~~L 123 (159)
T TIGR01924 47 VSEACTNAVKHAYKEGENGEIGISFHIYEDRLEIIVSDQGDSFDMDTFKQSLGPYDGSEPIDD-L--REGGLGLFLIETL 123 (159)
T ss_pred HHHHHHHHHHhccCCCCCCeEEEEEEEeCCEEEEEEEEcccccCchhhccccCCCCCCCCccc-C--CCCccCHHHHHHh
Confidence 55777777776665433334 4555566665 47799999987765543321111111111 1 2358999999999
Q ss_pred cCccEEec-CCeEEEe
Q 000132 1286 TDAPEIHS-NGFHVKF 1300 (2109)
Q Consensus 1286 TD~P~I~S-GGYsFkF 1300 (2109)
+|.+++.+ +|-.+++
T Consensus 124 ~D~v~~~~~~G~~l~l 139 (159)
T TIGR01924 124 MDEVEVYEDSGVTVAM 139 (159)
T ss_pred ccEEEEEeCCCEEEEE
Confidence 99888754 3344443
No 77
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=21.03 E-value=3.4e+02 Score=37.61 Aligned_cols=15 Identities=13% Similarity=0.494 Sum_probs=11.3
Q ss_pred cHHHHHHHHHhhcCC
Q 000132 532 TMSEVLEKMFQFYKP 546 (2109)
Q Consensus 532 ~~~~~~e~~~~~y~~ 546 (2109)
+-++++|...-|||.
T Consensus 691 ~A~~af~~~~~y~Ge 705 (830)
T KOG1923|consen 691 DAAEAFEDVVEYFGE 705 (830)
T ss_pred HHHHHHHhHhHhhCC
Confidence 345788888888885
No 78
>PRK10337 sensor protein QseC; Provisional
Probab=20.51 E-value=66 Score=39.83 Aligned_cols=71 Identities=17% Similarity=0.181 Sum_probs=48.6
Q ss_pred hhcccccccCCCCCCCCCcEEEEEeCCeEEEEeCCCCCCHhhHHHHHhccCccccCCCCCcccccccccceeccccCc
Q 000132 1211 LELVQNADDNIYPENVEPTLTFILQESGIVVLNNEQGFSAENIRALCDVGNSTKKGSSAGYIGRKGIGFKSVFRVTDA 1288 (2109)
Q Consensus 1211 ~ELIQNADDN~Y~e~v~PtLsF~L~dd~LlV~NNE~GFTeeDIeAICsIG~STKkg~~~gyIGeKGIGFKSVF~VTD~ 1288 (2109)
.+||.||=...-. .+.+.+.+....+.|.+||.|.++++++.|..-.-..+.. ..+..|+|..-|-.+.+.
T Consensus 358 ~Nli~NA~k~~~~---~~~i~i~~~~~~i~i~D~G~Gi~~~~~~~if~~f~~~~~~----~~~g~GlGL~iv~~i~~~ 428 (449)
T PRK10337 358 RNLLDNAIRYSPQ---GSVVDVTLNARNFTVRDNGPGVTPEALARIGERFYRPPGQ----EATGSGLGLSIVRRIAKL 428 (449)
T ss_pred HHHHHHHHhhCCC---CCeEEEEEEeeEEEEEECCCCCCHHHHHHhcccccCCCCC----CCCccchHHHHHHHHHHH
Confidence 3455555443211 2457777777789999999999999999998765433221 134589999888887764
No 79
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=20.31 E-value=79 Score=40.76 Aligned_cols=11 Identities=9% Similarity=0.380 Sum_probs=7.4
Q ss_pred HHHHhhhhcee
Q 000132 193 LMVTEARINAF 203 (2109)
Q Consensus 193 L~~~e~~in~f 203 (2109)
++++.||+|+-
T Consensus 365 ~iqIkGKvNsI 375 (480)
T KOG2675|consen 365 TIQIKGKVNSI 375 (480)
T ss_pred EEEEeceeeeE
Confidence 45667888764
No 80
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.17 E-value=8.8e+02 Score=30.34 Aligned_cols=15 Identities=33% Similarity=0.364 Sum_probs=9.9
Q ss_pred HccCccchhHHHHHH
Q 000132 154 MAGESVSSWKVSRSV 168 (2109)
Q Consensus 154 ~~ge~V~~~kv~~~v 168 (2109)
=||--|.-++|+.+|
T Consensus 309 yA~sAl~yedVstav 323 (338)
T KOG0917|consen 309 YAGSALQYEDVSTAV 323 (338)
T ss_pred HhhhhcchHHHHHHH
Confidence 356667777777666
Done!