Query 000132
Match_columns 2109
No_of_seqs 191 out of 235
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 18:44:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000132.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000132hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yc1_A HSP 86, heat shock prot 99.6 3.9E-16 1.3E-20 177.8 5.7 187 1158-1366 22-240 (264)
2 3peh_A Endoplasmin homolog; st 99.6 2.1E-15 7.1E-20 173.0 10.0 177 1188-1385 29-240 (281)
3 3nmq_A Heat shock protein HSP 99.6 1.8E-15 6.2E-20 170.2 6.9 156 1190-1366 24-211 (239)
4 2gqp_A Endoplasmin; GRP94, HSP 99.5 3E-14 1E-18 159.8 9.0 156 1190-1366 17-209 (236)
5 3t0h_A Heat shock protein HSP 99.5 4.3E-14 1.5E-18 158.3 7.1 155 1190-1365 17-203 (228)
6 3o0i_A HSP90AA1 protein; HSP90 99.4 7.7E-14 2.6E-18 158.5 8.6 167 1190-1377 45-244 (256)
7 2wer_A ATP-dependent molecular 99.4 1.3E-13 4.4E-18 152.6 9.0 113 1190-1302 11-152 (220)
8 1qy5_A Endoplasmin; GRP94, NEC 99.4 3E-13 1E-17 154.6 6.8 106 1190-1295 13-147 (269)
9 2ior_A Chaperone protein HTPG; 99.3 8.3E-13 2.9E-17 148.0 7.2 105 1190-1294 32-162 (235)
10 1y4s_A Chaperone protein HTPG; 99.3 4.6E-12 1.6E-16 157.0 8.9 154 1190-1366 12-202 (559)
11 2ioq_A Chaperone protein HTPG; 99.2 2.5E-12 8.6E-17 161.0 5.1 154 1190-1366 12-202 (624)
12 3ied_A Heat shock protein; HSP 99.2 5E-12 1.7E-16 143.6 6.1 162 1190-1366 32-261 (272)
13 2cg9_A ATP-dependent molecular 99.2 1.9E-11 6.5E-16 153.9 10.1 156 1190-1366 11-199 (677)
14 2o1u_A Endoplasmin; GRP94, HSP 99.2 1.7E-11 5.7E-16 154.3 6.7 155 1190-1365 30-221 (666)
15 1b63_A MUTL; DNA mismatch repa 97.1 0.00024 8.2E-09 83.6 4.1 89 1199-1293 18-114 (333)
16 3h4l_A DNA mismatch repair pro 96.8 0.00063 2.1E-08 81.4 3.8 98 1199-1302 19-129 (367)
17 1h7s_A PMS1 protein homolog 2; 96.5 0.00052 1.8E-08 81.9 0.8 98 1199-1302 28-139 (365)
18 3na3_A DNA mismatch repair pro 96.3 0.0031 1.1E-07 75.1 5.7 97 1200-1302 23-133 (348)
19 1mu5_A Type II DNA topoisomera 95.3 0.0076 2.6E-07 74.3 3.6 85 1208-1293 35-132 (471)
20 2zbk_B Type 2 DNA topoisomeras 94.5 0.018 6E-07 72.1 3.8 85 1208-1293 34-131 (530)
21 2q2e_B Type 2 DNA topoisomeras 94.0 0.035 1.2E-06 70.6 5.1 93 1208-1300 40-149 (621)
22 3fv5_A DNA topoisomerase 4 sub 88.7 0.17 5.6E-06 56.2 2.4 94 1207-1301 19-128 (201)
23 1kij_A DNA gyrase subunit B; t 82.7 0.26 9E-06 59.5 0.2 95 1207-1302 34-144 (390)
24 1th8_A Anti-sigma F factor; SP 81.9 0.85 2.9E-05 46.0 3.5 78 1209-1293 43-124 (145)
25 3jz3_A Sensor protein QSEC; he 74.3 1.1 3.9E-05 47.1 1.9 72 1209-1287 121-192 (222)
26 1bxd_A ENVZ(290-450), protein 72.4 1.2 3.9E-05 45.4 1.4 72 1209-1288 51-126 (161)
27 1id0_A PHOQ histidine kinase; 71.0 2.3 7.7E-05 42.5 3.1 69 1209-1287 48-120 (152)
28 1s16_A Topoisomerase IV subuni 70.9 2 6.8E-05 52.1 3.1 95 1207-1302 33-143 (390)
29 1ysr_A Sensor-type histidine k 68.1 3.8 0.00013 41.0 4.0 70 1210-1287 51-124 (150)
30 1ei1_A DNA gyrase B, GYRB; ATP 68.0 2 6.7E-05 52.2 2.2 95 1207-1302 36-146 (391)
31 3sl2_A Sensor histidine kinase 66.1 1.7 5.6E-05 45.1 0.9 77 1209-1287 47-127 (177)
32 4emv_A DNA topoisomerase IV, B 64.2 2.5 8.6E-05 47.9 2.0 94 1208-1302 43-151 (226)
33 4duh_A DNA gyrase subunit B; s 62.3 2.6 8.8E-05 47.6 1.6 95 1207-1302 37-147 (220)
34 2c2a_A Sensor histidine kinase 61.3 3.4 0.00012 45.2 2.3 78 1209-1287 142-223 (258)
35 1i58_A Chemotaxis protein CHEA 61.1 1.4 4.8E-05 46.1 -0.7 76 1210-1287 52-164 (189)
36 3d36_A Sporulation kinase B; G 57.3 4.3 0.00015 43.3 2.2 70 1209-1287 127-200 (244)
37 3cwv_A DNA gyrase, B subunit, 55.3 15 0.00051 44.4 6.6 88 1208-1302 33-129 (369)
38 1zxm_A TOPO IIA ATPase, DNA to 54.5 3.2 0.00011 50.6 0.7 95 1208-1302 55-168 (400)
39 3a0y_A Sensor protein; ATP-LID 54.2 3.2 0.00011 41.3 0.5 68 1210-1287 52-123 (152)
40 3zxo_A Redox sensor histidine 48.0 11 0.00037 36.7 3.2 55 1208-1288 46-103 (129)
41 2e0a_A Pyruvate dehydrogenase 47.8 5.8 0.0002 47.0 1.5 78 1210-1287 235-325 (394)
42 2btz_A Pyruvate dehydrogenase 46.5 6.1 0.00021 46.8 1.4 77 1210-1287 236-325 (394)
43 2q8g_A [pyruvate dehydrogenase 43.8 6.2 0.00021 47.0 0.9 61 1227-1287 269-338 (407)
44 4ew8_A Sensor protein DIVL; si 43.7 9.8 0.00034 41.5 2.4 70 1208-1287 158-231 (268)
45 3lnu_A Topoisomerase IV subuni 39.3 9.2 0.00032 46.9 1.4 95 1207-1302 52-162 (408)
46 3a0r_A Sensor protein; four he 38.3 12 0.00042 42.0 2.2 69 1209-1287 248-320 (349)
47 1b3q_A Protein (chemotaxis pro 37.7 11 0.00037 44.9 1.7 76 1210-1287 111-223 (379)
48 1gkz_A [3-methyl-2-oxobutanoat 36.6 6.2 0.00021 46.6 -0.6 58 1209-1266 242-308 (388)
49 1r62_A Nitrogen regulation pro 33.6 4.5 0.00015 40.4 -2.1 42 1239-1287 94-135 (160)
50 1y8o_A [pyruvate dehydrogenase 29.2 9.1 0.00031 45.9 -0.9 60 1227-1287 280-349 (419)
51 2k4f_A T-cell surface glycopro 25.9 41 0.0014 30.8 2.8 26 13-39 14-39 (57)
52 1pvg_A DNA topoisomerase II; G 23.9 19 0.00066 44.2 0.6 94 1208-1302 67-180 (418)
53 3ehh_A Sensor kinase (YOCF pro 22.7 26 0.00091 36.9 1.3 56 1209-1287 134-193 (218)
54 3ehg_A Sensor kinase (YOCF pro 21.7 23 0.00077 35.0 0.5 57 1208-1287 43-103 (128)
No 1
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=99.59 E-value=3.9e-16 Score=177.80 Aligned_cols=187 Identities=18% Similarity=0.303 Sum_probs=112.2
Q ss_pred HHHHHHHHhhccCcCCCCchhhhhhHHHHHHHHHHHHHHHHHhhhcCCCCcchhhcccccccCCC--------C-----C
Q 000132 1158 AALIVESIRRDEFGLGPNISNMESNMLKKQHARLGRALHCLSQELYSQDSHFLLELVQNADDNIY--------P-----E 1224 (2109)
Q Consensus 1158 Ar~~IE~IRr~~fgIg~el~~~e~~~L~kq~~~lgrAL~~LS~eLYSsdtHFL~ELIQNADDN~Y--------~-----e 1224 (2109)
.+.+++.|||++||.+......+...+.- +..+.+.+..|+..||++...||.||||||-||.. + .
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~F-~~ei~~Ll~ll~~~lys~~~~~lrELI~NA~DA~ak~r~~~l~~~~~~~~ 100 (264)
T 1yc1_A 22 GRDLYDDDDKDRWGSDQPMEEEEVETFAF-QAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYETLTDPSKLDS 100 (264)
T ss_dssp ---------------------CCEEEEEC-CHHHHHHHHHHHHCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGGG
T ss_pred hhHHHHHHHHHhhcCCCccccccceeEEe-hHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccCccccCC
Confidence 56799999999999986643211111111 22577889999999999999999999999999864 1 1
Q ss_pred CCCCcEEEEEeC--CeEEEEeCCCCCCHhhH-HHHHhccCccccC--------CCCCcccccccccceeccccCccEEec
Q 000132 1225 NVEPTLTFILQE--SGIVVLNNEQGFSAENI-RALCDVGNSTKKG--------SSAGYIGRKGIGFKSVFRVTDAPEIHS 1293 (2109)
Q Consensus 1225 ~v~PtLsF~L~d--d~LlV~NNE~GFTeeDI-eAICsIG~STKkg--------~~~gyIGeKGIGFKSVF~VTD~P~I~S 1293 (2109)
+....+.+...+ ..|.|..||.|++++|+ .+++.+|.|.|+. .....||.|||||+|+|.++++|.|.|
T Consensus 101 ~~~i~I~i~~d~~~~~I~I~DnG~GMs~edL~~~l~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~va~~v~V~S 180 (264)
T 1yc1_A 101 GKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVIT 180 (264)
T ss_dssp CCCCCEEEEEETTTTEEEEEECSCCCCHHHHHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHHHEEEEEEEE
T ss_pred CCeEEEEEEECCCeeEEEEEECCcCCCHHHHHHHHHhhccccchhhhhhhccccchhhcCCCCCCccccccCCCEEEEEE
Confidence 123456665543 46999999999999996 8999999998753 223689999999999999999999987
Q ss_pred C-----CeEEEecCCCCccceecCcccCCCchhhhhhcccCCCcccccCCCceEEEecCccccch---hhhHhHHHHHhh
Q 000132 1294 N-----GFHVKFDTSEGQIGFVLPTLVPPFNIDMFCRLLSKDPVQLESKCWNTCIRLPFRTKFSE---GIAMNNIVDMFS 1365 (2109)
Q Consensus 1294 G-----GYsFkFD~~d~~LG~IlP~wv~P~~~~~isrils~~~~~~~~~~~~T~IrLPLRse~S~---~~~v~sI~e~F~ 1365 (2109)
. +|.|..+.+. .+.+ .|.+ ......+|+|+|.|+.+..+ ...+.++.+.+.
T Consensus 181 r~~~~~~~~w~~~~~~---~~~i----~~~~--------------~~~~~~GT~I~l~Lk~~~~e~~e~~~i~~lv~k~s 239 (264)
T 1yc1_A 181 KHNDDEQYAWESSAGG---SFTV----RTDT--------------GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHS 239 (264)
T ss_dssp ECTTSCCEEEEECSTT---EEEE----EECC--------------SSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHT
T ss_pred ecCCCceEEEEEcCCc---eEEE----eecC--------------CCCCCCCeEEEEEECCchhhhhhHHHHHHHHHHHH
Confidence 5 4666654321 1111 0000 01234589999999775322 234455555544
Q ss_pred h
Q 000132 1366 D 1366 (2109)
Q Consensus 1366 ~ 1366 (2109)
.
T Consensus 240 ~ 240 (264)
T 1yc1_A 240 Q 240 (264)
T ss_dssp T
T ss_pred h
Confidence 3
No 2
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=99.58 E-value=2.1e-15 Score=172.96 Aligned_cols=177 Identities=18% Similarity=0.301 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHhhhcCCCCcchhhcccccccCCC-------------CCCCCCcEEEEEe--CCeEEEEeCCCCCCHhh
Q 000132 1188 HARLGRALHCLSQELYSQDSHFLLELVQNADDNIY-------------PENVEPTLTFILQ--ESGIVVLNNEQGFSAEN 1252 (2109)
Q Consensus 1188 ~~~lgrAL~~LS~eLYSsdtHFL~ELIQNADDN~Y-------------~e~v~PtLsF~L~--dd~LlV~NNE~GFTeeD 1252 (2109)
++.+.+.+..|+..||++...||.||||||-||.- .......+.+... ...|.|.+||.|+|++|
T Consensus 29 qaei~~Ll~ll~~~lYsn~~ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~d~~~~tLtI~DNGiGMt~ed 108 (281)
T 3peh_A 29 QTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTGIGMTKVD 108 (281)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHH
T ss_pred hHHHHHHHHHHHHhccCChHHHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEEcCCCcEEEEEeCCCCCCHHH
Confidence 34788899999999999999999999999999842 1122345665554 35799999999999999
Q ss_pred H-HHHHhccCcccc---------CCCCCcccccccccceeccccCccEEecCC-----eEEEecCCCCccce-ecCcccC
Q 000132 1253 I-RALCDVGNSTKK---------GSSAGYIGRKGIGFKSVFRVTDAPEIHSNG-----FHVKFDTSEGQIGF-VLPTLVP 1316 (2109)
Q Consensus 1253 I-eAICsIG~STKk---------g~~~gyIGeKGIGFKSVF~VTD~P~I~SGG-----YsFkFD~~d~~LG~-IlP~wv~ 1316 (2109)
+ .+++.||.|.++ +.....||+|||||.|+|+|+|.|.|.|.. |.|.-+.+ -.| |.|.
T Consensus 109 L~~~LgtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySaf~vadkV~V~Sk~~~~~~~~Wes~g~---g~fti~~~--- 182 (281)
T 3peh_A 109 LINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNDDEQYIWESTAD---AKFTIYKD--- 182 (281)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGGGGTEEEEEEEEECTTSCCEEEEEETT---SCEEEEEC---
T ss_pred HHHHHHHHHhHhhhhHHHhhhccccccccccccCccchhhccccCEEEEEEecCCCCEEEEEECCC---ccEEEEEc---
Confidence 7 589999998754 223478999999999999999999998853 44433221 011 1110
Q ss_pred CCchhhhhhcccCCCcccccCCCceEEEecCccccch---hhhHhHHHHHhh-hcCCceeeccCCCCeEEEEE
Q 000132 1317 PFNIDMFCRLLSKDPVQLESKCWNTCIRLPFRTKFSE---GIAMNNIVDMFS-DLHPSLLLFLHRLQCIMFRN 1385 (2109)
Q Consensus 1317 P~~~~~isrils~~~~~~~~~~~~T~IrLPLRse~S~---~~~v~sI~e~F~-~L~pslLLFLRkLrrIsVr~ 1385 (2109)
+ .......||+|+|.|+.+..+ ...+.+|....+ -+.-.+.|+..+.+..++..
T Consensus 183 ~---------------~~~~~~~GT~I~L~Lked~~e~le~~~ik~ivkkys~fi~~pI~l~~~k~~~~ev~~ 240 (281)
T 3peh_A 183 P---------------RGATLKRGTRISLHLKEDATNLLNDKKLMDLISKYSQFIQFPIYLLHENVYTEEVLA 240 (281)
T ss_dssp T---------------TCSTTSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCCSCEEEEEEEEEEEEEEH
T ss_pred C---------------CCCCCCCCeEEEEEECCchhhhcCHHHHHHHHHHhhccCCcceEEeeeeeeeeccCc
Confidence 0 001345699999999875432 334555665554 46677899999999888864
No 3
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=99.56 E-value=1.8e-15 Score=170.24 Aligned_cols=156 Identities=20% Similarity=0.338 Sum_probs=110.2
Q ss_pred HHHHHHHHHHhhhcCCCCcchhhcccccccCC----C---------CCCCCCcEEEEEe--CCeEEEEeCCCCCCHhhH-
Q 000132 1190 RLGRALHCLSQELYSQDSHFLLELVQNADDNI----Y---------PENVEPTLTFILQ--ESGIVVLNNEQGFSAENI- 1253 (2109)
Q Consensus 1190 ~lgrAL~~LS~eLYSsdtHFL~ELIQNADDN~----Y---------~e~v~PtLsF~L~--dd~LlV~NNE~GFTeeDI- 1253 (2109)
.+.+.+..|+..||++...||.||||||.||. | ..+....+.+... ...|.|.+||.|||++|+
T Consensus 24 e~~~ll~ll~~~lYs~~~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~edL~ 103 (239)
T 3nmq_A 24 EIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLI 103 (239)
T ss_dssp HHHHHHHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHH
T ss_pred hHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEeCCccEEEEEeCCCCCCHHHHH
Confidence 56778999999999999999999999999983 1 2222345555554 346999999999999997
Q ss_pred HHHHhccCccccC--------CCCCcccccccccceeccccCccEEecCC-----eEEEecCCCCccceecCcccCCCch
Q 000132 1254 RALCDVGNSTKKG--------SSAGYIGRKGIGFKSVFRVTDAPEIHSNG-----FHVKFDTSEGQIGFVLPTLVPPFNI 1320 (2109)
Q Consensus 1254 eAICsIG~STKkg--------~~~gyIGeKGIGFKSVF~VTD~P~I~SGG-----YsFkFD~~d~~LG~IlP~wv~P~~~ 1320 (2109)
.+++.||.|.|+. .....||+|||||.|+|+|+|+|.|.|.. |.|.-+.+ -.|.+-
T Consensus 104 ~~LgtIA~Sgtk~f~e~~~~~~d~~~IGqFGvGfySaf~vadkv~V~Sk~~~~~~~~W~s~~~---g~fti~-------- 172 (239)
T 3nmq_A 104 NNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAG---GSFTVR-------- 172 (239)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEECST---TEEEEE--------
T ss_pred HHHHHHhcccchhhhhhhcccCCcccccccCcccccccccCCEEEEEEeeCCCceeEEEECCC---CcEEEE--------
Confidence 8899999987652 22468999999999999999999998853 44433211 111110
Q ss_pred hhhhhcccCCCcccccCCCceEEEecCccccch---hhhHhHHHHHhhh
Q 000132 1321 DMFCRLLSKDPVQLESKCWNTCIRLPFRTKFSE---GIAMNNIVDMFSD 1366 (2109)
Q Consensus 1321 ~~isrils~~~~~~~~~~~~T~IrLPLRse~S~---~~~v~sI~e~F~~ 1366 (2109)
+........+|.|+|.|+.+..+ ...+.+|.+...+
T Consensus 173 ----------~~~~~~~~~GT~I~L~lk~d~~e~l~~~~i~~lv~kys~ 211 (239)
T 3nmq_A 173 ----------ADHGEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQ 211 (239)
T ss_dssp ----------ECCSSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHCT
T ss_pred ----------ecCCCcCCCCCEEEEEECCChHHhcCHHHHHHHHHHHHh
Confidence 00011235699999999875322 3345566655554
No 4
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=99.49 E-value=3e-14 Score=159.81 Aligned_cols=156 Identities=25% Similarity=0.324 Sum_probs=104.3
Q ss_pred HHHHHHHHHHhhhcCCCCcchhhcccccccCCC-------------CCCCCCcEEEEEeC--CeEEEEeCCCCCCHhhH-
Q 000132 1190 RLGRALHCLSQELYSQDSHFLLELVQNADDNIY-------------PENVEPTLTFILQE--SGIVVLNNEQGFSAENI- 1253 (2109)
Q Consensus 1190 ~lgrAL~~LS~eLYSsdtHFL~ELIQNADDN~Y-------------~e~v~PtLsF~L~d--d~LlV~NNE~GFTeeDI- 1253 (2109)
.+.+.+..|+..||+....||.||||||-||.. ..+....+.+.+.+ ..|.|..||.|++++|+
T Consensus 17 ei~~L~~ll~~~lys~~~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d~~~~~i~I~DnG~GMt~edl~ 96 (236)
T 2gqp_A 17 EVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELV 96 (236)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHH
T ss_pred hHHHHHHHHHHhhcCCchHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEcCCCCEEEEEECCcCCCHHHHH
Confidence 566788999999999999999999999999953 11223457766654 46999999999999995
Q ss_pred HHHHhccCccccC-------------CCCCcccccccccceeccccCccEEecCC-----eEEEecCCCCccceecCccc
Q 000132 1254 RALCDVGNSTKKG-------------SSAGYIGRKGIGFKSVFRVTDAPEIHSNG-----FHVKFDTSEGQIGFVLPTLV 1315 (2109)
Q Consensus 1254 eAICsIG~STKkg-------------~~~gyIGeKGIGFKSVF~VTD~P~I~SGG-----YsFkFD~~d~~LG~IlP~wv 1315 (2109)
.+++.+|.|.|+. .....||+|||||+|+|.|+++|.|.|.. |.|..+. |.+.....
T Consensus 97 ~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~va~~v~V~Sr~~~~~~~~w~~~g-----g~~~i~~~ 171 (236)
T 2gqp_A 97 KNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-----NEFSVIAD 171 (236)
T ss_dssp HHHHCC---------------------CHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEESS-----SCEEEEEC
T ss_pred HHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhhcCCEEEEEEeCCCCceEEEEEeC-----CEEEEEec
Confidence 8999999997642 11247999999999999999999998864 4554321 21100000
Q ss_pred CCCchhhhhhcccCCCcccccCCCceEEEecCccccc---hhhhHhHHHHHhhh
Q 000132 1316 PPFNIDMFCRLLSKDPVQLESKCWNTCIRLPFRTKFS---EGIAMNNIVDMFSD 1366 (2109)
Q Consensus 1316 ~P~~~~~isrils~~~~~~~~~~~~T~IrLPLRse~S---~~~~v~sI~e~F~~ 1366 (2109)
++ ......+|+|+|+|+.+.. +...+.++.+.+..
T Consensus 172 ~~----------------~~~~~~GT~I~l~Lk~~~~~~le~~~i~~lv~~~s~ 209 (236)
T 2gqp_A 172 PR----------------GNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQ 209 (236)
T ss_dssp TT----------------CSCSSSEEEEEEEECGGGGGGGCHHHHHHHHHHHHT
T ss_pred cC----------------CCCCCCCeEEEEEECCcchhhChHHHHHHHHHHHhh
Confidence 00 0123468999999987543 23344555555543
No 5
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=99.46 E-value=4.3e-14 Score=158.25 Aligned_cols=155 Identities=19% Similarity=0.327 Sum_probs=110.3
Q ss_pred HHHHHHHHHHhhhcCCCCcchhhcccccccCCCC-------------CCCCCcEEEEEe--CCeEEEEeCCCCCCHhhH-
Q 000132 1190 RLGRALHCLSQELYSQDSHFLLELVQNADDNIYP-------------ENVEPTLTFILQ--ESGIVVLNNEQGFSAENI- 1253 (2109)
Q Consensus 1190 ~lgrAL~~LS~eLYSsdtHFL~ELIQNADDN~Y~-------------e~v~PtLsF~L~--dd~LlV~NNE~GFTeeDI- 1253 (2109)
.+.+.+..|+..||++...||.||||||-||... .+....+.+... ...|.|..||.|++++|+
T Consensus 17 ei~~ll~ll~~~lYs~~~~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d~~~~~i~V~DnG~GMs~edl~ 96 (228)
T 3t0h_A 17 EIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLI 96 (228)
T ss_dssp HHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHH
T ss_pred eHHHHHHHHHHhhcCCcHHHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEeCCeeEEEEEeCCCCCCHHHHH
Confidence 6778899999999999999999999999998421 111234555443 356999999999999998
Q ss_pred HHHHhccCccccC--------CCCCcccccccccceeccccCccEEecC-----CeEEEecCCCCccceecCcccCCCch
Q 000132 1254 RALCDVGNSTKKG--------SSAGYIGRKGIGFKSVFRVTDAPEIHSN-----GFHVKFDTSEGQIGFVLPTLVPPFNI 1320 (2109)
Q Consensus 1254 eAICsIG~STKkg--------~~~gyIGeKGIGFKSVF~VTD~P~I~SG-----GYsFkFD~~d~~LG~IlP~wv~P~~~ 1320 (2109)
.+++.+|.|.|+. .....||+|||||+|+|.|+|++.|.|. +|.|..+.+. .+.+ .|.
T Consensus 97 ~~l~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~vad~v~V~Sr~~~~~~~~w~~~g~~---~~~v----~~~-- 167 (228)
T 3t0h_A 97 NNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGG---SFTV----RTD-- 167 (228)
T ss_dssp TGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCEEEEEECSTT---EEEE----EEC--
T ss_pred HHHHhhccccchhhhhhhcccCCcccCCCCChhHHHHhccCCEEEEEEecCCCCcEEEEEcCCc---eEEE----eec--
Confidence 6899999998742 2346899999999999999999999884 3566554321 1111 000
Q ss_pred hhhhhcccCCCcccccCCCceEEEecCccccch---hhhHhHHHHHhh
Q 000132 1321 DMFCRLLSKDPVQLESKCWNTCIRLPFRTKFSE---GIAMNNIVDMFS 1365 (2109)
Q Consensus 1321 ~~isrils~~~~~~~~~~~~T~IrLPLRse~S~---~~~v~sI~e~F~ 1365 (2109)
.......||+|++.|+++..+ ...+.++.+.+.
T Consensus 168 ------------~~~~~~~GT~I~v~Lk~~~~E~~e~~~i~~iv~~~a 203 (228)
T 3t0h_A 168 ------------TGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHS 203 (228)
T ss_dssp ------------CSSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHS
T ss_pred ------------CCCCCCCCcEEEEEECCchhhhhhHHHHHHHHHHHH
Confidence 001235699999999886433 234555665555
No 6
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=99.45 E-value=7.7e-14 Score=158.50 Aligned_cols=167 Identities=19% Similarity=0.331 Sum_probs=115.4
Q ss_pred HHHHHHHHHHhhhcCCCCcchhhcccccccCCC-------------CCCCCCcEEEEEe--CCeEEEEeCCCCCCHhhH-
Q 000132 1190 RLGRALHCLSQELYSQDSHFLLELVQNADDNIY-------------PENVEPTLTFILQ--ESGIVVLNNEQGFSAENI- 1253 (2109)
Q Consensus 1190 ~lgrAL~~LS~eLYSsdtHFL~ELIQNADDN~Y-------------~e~v~PtLsF~L~--dd~LlV~NNE~GFTeeDI- 1253 (2109)
.+.+.+..|+..||+....||.||||||-||.. ..+....+.+... ...|.|..||.|+|++|+
T Consensus 45 ei~~Ll~ll~~~lYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~DnG~GMt~edl~ 124 (256)
T 3o0i_A 45 EIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLI 124 (256)
T ss_dssp HHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHH
T ss_pred eHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEcCCceEEEEecCCCCcCHHHHH
Confidence 677889999999999999999999999999842 1222334555554 346999999999999998
Q ss_pred HHHHhccCccccC--------CCCCcccccccccceeccccCccEEecC-----CeEEEecCCCCccceecCcccCCCch
Q 000132 1254 RALCDVGNSTKKG--------SSAGYIGRKGIGFKSVFRVTDAPEIHSN-----GFHVKFDTSEGQIGFVLPTLVPPFNI 1320 (2109)
Q Consensus 1254 eAICsIG~STKkg--------~~~gyIGeKGIGFKSVF~VTD~P~I~SG-----GYsFkFD~~d~~LG~IlP~wv~P~~~ 1320 (2109)
.+++.+|.|.++. .....||.|||||+|+|.|+|+|.|.|. +|.|..+.+. .+.+ .|.
T Consensus 125 ~~l~~ia~S~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f~Vadkv~V~Sr~~~~~g~~w~s~gg~---~~~v----~~~-- 195 (256)
T 3o0i_A 125 NNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGG---SFTV----RTD-- 195 (256)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCEEEEEECSTT---EEEE----EEC--
T ss_pred HHHHhhccccccchhhhhcccCCccccCCCcchHHHhhccCCeEEEEEcCCCCceEEEEEeccc---eEEE----eeC--
Confidence 6999999987752 2346899999999999999999999885 3555554321 1111 000
Q ss_pred hhhhhcccCCCcccccCCCceEEEecCccccchh---hhHhHHHHHhhh-cCCceeeccCC
Q 000132 1321 DMFCRLLSKDPVQLESKCWNTCIRLPFRTKFSEG---IAMNNIVDMFSD-LHPSLLLFLHR 1377 (2109)
Q Consensus 1321 ~~isrils~~~~~~~~~~~~T~IrLPLRse~S~~---~~v~sI~e~F~~-L~pslLLFLRk 1377 (2109)
.......||+|+|.|+....+- ..+.++.+.+.+ +.-.+.|...+
T Consensus 196 ------------~~~~~~~GT~I~l~LK~~~~e~~e~~~I~~iv~k~s~~l~~PI~~~~~~ 244 (256)
T 3o0i_A 196 ------------TGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEK 244 (256)
T ss_dssp ------------CSSCCSSEEEEEEEECGGGGGGGCHHHHHHHHHHHCTTCSSCEEECCC-
T ss_pred ------------CCCCCCCCcEEEEEEcCcchhhccHHHHHHHHHHHHhhCCCCeEEeeee
Confidence 0012356999999998764432 345566666553 33344444444
No 7
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=99.43 E-value=1.3e-13 Score=152.64 Aligned_cols=113 Identities=20% Similarity=0.357 Sum_probs=90.3
Q ss_pred HHHHHHHHHHhhhcCCCCcchhhcccccccCCCC-------------CCCCCcEEEEEeC--CeEEEEeCCCCCCHhhH-
Q 000132 1190 RLGRALHCLSQELYSQDSHFLLELVQNADDNIYP-------------ENVEPTLTFILQE--SGIVVLNNEQGFSAENI- 1253 (2109)
Q Consensus 1190 ~lgrAL~~LS~eLYSsdtHFL~ELIQNADDN~Y~-------------e~v~PtLsF~L~d--d~LlV~NNE~GFTeeDI- 1253 (2109)
.+.+.++.|+..||++...||.||||||-||... .+....+.+...+ ..|.|..||.|++++|+
T Consensus 11 ~~~~l~~ll~~~lys~~~~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~~~~~i~I~DnG~GMs~edl~ 90 (220)
T 2wer_A 11 EITQLMSLIINTVYSNKEIFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAELI 90 (220)
T ss_dssp HHHHHHHHHHHHCCSSTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGGGTEEEEEECSCCCCHHHHH
T ss_pred cHHHHHHHHHHhccCCchHHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECCCCCEEEEEEcCCCCCHHHHH
Confidence 5667889999999999999999999999998541 1122346665543 46899999999999995
Q ss_pred HHHHhccCccccC--------CCCCcccccccccceeccccCccEEecC-----CeEEEecC
Q 000132 1254 RALCDVGNSTKKG--------SSAGYIGRKGIGFKSVFRVTDAPEIHSN-----GFHVKFDT 1302 (2109)
Q Consensus 1254 eAICsIG~STKkg--------~~~gyIGeKGIGFKSVF~VTD~P~I~SG-----GYsFkFD~ 1302 (2109)
.+++.+|.|.|+. .....||+|||||.|+|.+++.+.|.|. +|.|..+.
T Consensus 91 ~~l~~ia~S~~~~f~~k~~~~~~~~~iG~fGiG~~s~~~~~~~v~v~S~~~~~~~~~~~~~~ 152 (220)
T 2wer_A 91 NNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNA 152 (220)
T ss_dssp HHTTTSCCTTHHHHHHHHTTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEECS
T ss_pred HHHHhHhcccchhHHHHhhccCCcccCCccchhHHHhhhcCCeeEEEEecCCCceeEEEeCC
Confidence 7899999987541 2235799999999999999999999886 57777654
No 8
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=99.37 E-value=3e-13 Score=154.64 Aligned_cols=106 Identities=27% Similarity=0.422 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhhhcCCCCcchhhcccccccCCC-------------CCCCCCcEEEEEeC--CeEEEEeCCCCCCHhh-H
Q 000132 1190 RLGRALHCLSQELYSQDSHFLLELVQNADDNIY-------------PENVEPTLTFILQE--SGIVVLNNEQGFSAEN-I 1253 (2109)
Q Consensus 1190 ~lgrAL~~LS~eLYSsdtHFL~ELIQNADDN~Y-------------~e~v~PtLsF~L~d--d~LlV~NNE~GFTeeD-I 1253 (2109)
.+.+.+..|+..||+....||.||||||-||.. ..+....+.+...+ ..|.|..||.|+|.+| +
T Consensus 13 ei~~Ll~li~~~lYsn~eifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~l~I~DnGiGMt~edl~ 92 (269)
T 1qy5_A 13 EVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELV 92 (269)
T ss_dssp HHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHH
T ss_pred hHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcCCceEEEEEECCCCCCHHHHH
Confidence 567788999999999999999999999999842 12223456665543 4689999999999999 5
Q ss_pred HHHHhccCccccC-------------CCCCcccccccccceeccccCccEEecCC
Q 000132 1254 RALCDVGNSTKKG-------------SSAGYIGRKGIGFKSVFRVTDAPEIHSNG 1295 (2109)
Q Consensus 1254 eAICsIG~STKkg-------------~~~gyIGeKGIGFKSVF~VTD~P~I~SGG 1295 (2109)
.+++.||.|.++. .....||.|||||.|+|+|++.|.|.|..
T Consensus 93 ~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~va~~v~V~Sk~ 147 (269)
T 1qy5_A 93 KNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKH 147 (269)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGGTEEEEEEEEEC
T ss_pred HHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhhccceEEEEEEe
Confidence 8999999995421 22357999999999999999999998864
No 9
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=99.33 E-value=8.3e-13 Score=147.96 Aligned_cols=105 Identities=26% Similarity=0.436 Sum_probs=85.5
Q ss_pred HHHHHHHHHHhhhcCCCCcchhhcccccccCCC-------------CCCCCCcEEEEEeC--CeEEEEeCCCCCCHhhH-
Q 000132 1190 RLGRALHCLSQELYSQDSHFLLELVQNADDNIY-------------PENVEPTLTFILQE--SGIVVLNNEQGFSAENI- 1253 (2109)
Q Consensus 1190 ~lgrAL~~LS~eLYSsdtHFL~ELIQNADDN~Y-------------~e~v~PtLsF~L~d--d~LlV~NNE~GFTeeDI- 1253 (2109)
.+.+.+..|+..||++...||.||||||-||.. ..+....+.+.+.+ ..|.|..||.|++++|+
T Consensus 32 ~i~~L~~~l~~~lys~~~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~~~~~i~I~DnG~GMs~edl~ 111 (235)
T 2ior_A 32 EVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVI 111 (235)
T ss_dssp HHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETTTTEEEEEECSSCCCHHHHH
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEcCCceEEEEEECCCCCCHHHHH
Confidence 466778889999999999999999999999861 11223567777653 46999999999999998
Q ss_pred HHHHhccCccccC----------CCCCcccccccccceeccccCccEEecC
Q 000132 1254 RALCDVGNSTKKG----------SSAGYIGRKGIGFKSVFRVTDAPEIHSN 1294 (2109)
Q Consensus 1254 eAICsIG~STKkg----------~~~gyIGeKGIGFKSVF~VTD~P~I~SG 1294 (2109)
.+++.+|.|.|+. .....||+|||||+|+|.+++.+.|.|.
T Consensus 112 ~~~~~ia~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~~~~~~~v~V~Sr 162 (235)
T 2ior_A 112 DHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTR 162 (235)
T ss_dssp HHHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGGGGTEEEEEEEEE
T ss_pred HHHHHHccccccchhhhhccccccccccCCCCChhHHHHHhCcCeEEEEEe
Confidence 6788999998642 1125799999999999999999999764
No 10
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=99.26 E-value=4.6e-12 Score=156.95 Aligned_cols=154 Identities=24% Similarity=0.380 Sum_probs=110.2
Q ss_pred HHHHHHHHHHhhhcCCCCcchhhcccccccCC-------------CCCCCCCcEEEEEeC--CeEEEEeCCCCCCHhh-H
Q 000132 1190 RLGRALHCLSQELYSQDSHFLLELVQNADDNI-------------YPENVEPTLTFILQE--SGIVVLNNEQGFSAEN-I 1253 (2109)
Q Consensus 1190 ~lgrAL~~LS~eLYSsdtHFL~ELIQNADDN~-------------Y~e~v~PtLsF~L~d--d~LlV~NNE~GFTeeD-I 1253 (2109)
.+.+.+..|+..||++...||.||||||-||. +..+..+.+.+.+.+ ..|.|..||.|+|++| +
T Consensus 12 ei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~DnGiGMt~edl~ 91 (559)
T 1y4s_A 12 EVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVI 91 (559)
T ss_dssp THHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTTTEEEEEECSSCCCHHHHH
T ss_pred cHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeCCCcEEEEEECCCCCCHHHHH
Confidence 34567888999999999999999999999996 222334678877754 4699999999999999 5
Q ss_pred HHHHhccCccccC----------CCCCcccccccccceeccccCccEEecCC--------eEEEecCCCCccceecCccc
Q 000132 1254 RALCDVGNSTKKG----------SSAGYIGRKGIGFKSVFRVTDAPEIHSNG--------FHVKFDTSEGQIGFVLPTLV 1315 (2109)
Q Consensus 1254 eAICsIG~STKkg----------~~~gyIGeKGIGFKSVF~VTD~P~I~SGG--------YsFkFD~~d~~LG~IlP~wv 1315 (2109)
.+++.||.|.|+. .....||.|||||.|+|.|+++|.|.|.. |.|..+.+ -.+.+
T Consensus 92 ~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~---~~~~i---- 164 (559)
T 1y4s_A 92 DHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGE---GEYTV---- 164 (559)
T ss_dssp HHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGGHHHHEEEEEEEEECSSSCGGGEEEEEECSS---SEEEE----
T ss_pred HHHhhhcccccHHHHHHhhccccccccccCCCCcchhhhhhccCeEEEEEcCCCCCCCeeEEEEEeCC---CeeEE----
Confidence 7899999998752 12467999999999999999999998753 44443221 01110
Q ss_pred CCCchhhhhhcccCCCcccccCCCceEEEecCccccch---hhhHhHHHHHhhh
Q 000132 1316 PPFNIDMFCRLLSKDPVQLESKCWNTCIRLPFRTKFSE---GIAMNNIVDMFSD 1366 (2109)
Q Consensus 1316 ~P~~~~~isrils~~~~~~~~~~~~T~IrLPLRse~S~---~~~v~sI~e~F~~ 1366 (2109)
.| ......||+|+|.|+.+..+ ...+.+|.+.+..
T Consensus 165 ~~----------------~~~~~~GT~I~L~Lk~d~~Efle~~~I~~iv~kys~ 202 (559)
T 1y4s_A 165 AD----------------ITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSD 202 (559)
T ss_dssp EE----------------ECCCSCEEEEEEEECTTCGGGSCHHHHHHHHHHHHT
T ss_pred eE----------------CCCCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhc
Confidence 00 01234689999999875433 3345666665554
No 11
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=99.24 E-value=2.5e-12 Score=160.96 Aligned_cols=154 Identities=24% Similarity=0.388 Sum_probs=105.8
Q ss_pred HHHHHHHHHHhhhcCCCCcchhhcccccccCC-------------CCCCCCCcEEEEEeC--CeEEEEeCCCCCCHhh-H
Q 000132 1190 RLGRALHCLSQELYSQDSHFLLELVQNADDNI-------------YPENVEPTLTFILQE--SGIVVLNNEQGFSAEN-I 1253 (2109)
Q Consensus 1190 ~lgrAL~~LS~eLYSsdtHFL~ELIQNADDN~-------------Y~e~v~PtLsF~L~d--d~LlV~NNE~GFTeeD-I 1253 (2109)
.+.+.+..|+..||++...||.||||||-||. +..+..+.+.+.+.+ ..|.|..||.|+|++| +
T Consensus 12 ei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~~~~~I~I~DnGiGMt~edl~ 91 (624)
T 2ioq_A 12 EVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVI 91 (624)
T ss_dssp ---CCHHHHHHHHSSCTTHHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHH
T ss_pred cHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeCCCcEEEEEECCCCCCHHHHH
Confidence 45567888999999999999999999999995 222334567777754 4699999999999999 5
Q ss_pred HHHHhccCccccC----------CCCCcccccccccceeccccCccEEecCC--------eEEEecCCCCccceecCccc
Q 000132 1254 RALCDVGNSTKKG----------SSAGYIGRKGIGFKSVFRVTDAPEIHSNG--------FHVKFDTSEGQIGFVLPTLV 1315 (2109)
Q Consensus 1254 eAICsIG~STKkg----------~~~gyIGeKGIGFKSVF~VTD~P~I~SGG--------YsFkFD~~d~~LG~IlP~wv 1315 (2109)
.+++.||.|.|+. .....||.|||||.|+|.|+|+|.|.|.. |.|..+.+ + .+.+
T Consensus 92 ~~l~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~--~-~~~i---- 164 (624)
T 2ioq_A 92 DHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGE--G-EYTV---- 164 (624)
T ss_dssp HHHHHHCC---------------CCTTHHHHHHHHHHHHHHHEEEEEEEEECTTSCGGGEEEEEECSS--S-CCEE----
T ss_pred HHHHhhcccccHHHHHHhcccccccccccCCCCccHHHHHhcCCeEEEEECCCCCCCCeeEEEEEeCC--C-eEEE----
Confidence 7899999998642 13467999999999999999999998753 44443321 0 1100
Q ss_pred CCCchhhhhhcccCCCcccccCCCceEEEecCccccch---hhhHhHHHHHhhh
Q 000132 1316 PPFNIDMFCRLLSKDPVQLESKCWNTCIRLPFRTKFSE---GIAMNNIVDMFSD 1366 (2109)
Q Consensus 1316 ~P~~~~~isrils~~~~~~~~~~~~T~IrLPLRse~S~---~~~v~sI~e~F~~ 1366 (2109)
.| ......||+|+|.|+.+..+ ...+.+|.+...+
T Consensus 165 ~~----------------~~~~~~GT~I~L~Lk~d~~Efl~~~~i~~ivkkys~ 202 (624)
T 2ioq_A 165 AD----------------ITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSD 202 (624)
T ss_dssp EE----------------ECCSSSEEEEEEEECTTCGGGGCHHHHHHHHHHHHT
T ss_pred EE----------------CCCCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhc
Confidence 00 01234689999999875433 3345566665554
No 12
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=99.23 E-value=5e-12 Score=143.61 Aligned_cols=162 Identities=19% Similarity=0.299 Sum_probs=109.9
Q ss_pred HHHHHHHHHHhhhcCCCCcchhhcccccccCCC-----------------------------------------------
Q 000132 1190 RLGRALHCLSQELYSQDSHFLLELVQNADDNIY----------------------------------------------- 1222 (2109)
Q Consensus 1190 ~lgrAL~~LS~eLYSsdtHFL~ELIQNADDN~Y----------------------------------------------- 1222 (2109)
.+.+.+..+...||++..=||.||||||-||.-
T Consensus 32 e~~~ll~li~~slYs~keiFlRELISNasDA~dK~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 111 (272)
T 3ied_A 32 EVNKVMDIIVNSLYTDKDVFLRELISNASDACDKKRIILENNKLIKDAEVVTNEEIKNETEKEKTENVNESTDKKENVEE 111 (272)
T ss_dssp HHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------------------------------
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHhhHHHHHHHHHhccChhhhhcccccccccccccccccccccccccccccccccc
Confidence 567788999999999999999999999999721
Q ss_pred --CCCCCCcEEEEEeC--CeEEEEeCCCCCCHhhHH-HHHhccCccccC---------CCCCcccccccccceeccccCc
Q 000132 1223 --PENVEPTLTFILQE--SGIVVLNNEQGFSAENIR-ALCDVGNSTKKG---------SSAGYIGRKGIGFKSVFRVTDA 1288 (2109)
Q Consensus 1223 --~e~v~PtLsF~L~d--d~LlV~NNE~GFTeeDIe-AICsIG~STKkg---------~~~gyIGeKGIGFKSVF~VTD~ 1288 (2109)
+......+.+...+ ..|.|..||.|+|++++. +|+.||.|.++. .....||+|||||.|+|+|+|.
T Consensus 112 ~~~~~~~l~I~I~~Dk~~~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVGFySaFmVAdk 191 (272)
T 3ied_A 112 EKNDIKKLIIKIKPDKEKKTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSSFLVSNR 191 (272)
T ss_dssp --CGGGGCCEEEEEETTTTEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGGGGTEEE
T ss_pred ccCCCCCcEEEEEEeCCCCEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccceeheeeccCCE
Confidence 00112346666643 469999999999999987 699999997542 2246899999999999999999
Q ss_pred cEEecCC----eEEEecCCCCccceecCcccCCCchhhhhhcccCCCcccccCCCceEEEecCccccch---hhhHhHHH
Q 000132 1289 PEIHSNG----FHVKFDTSEGQIGFVLPTLVPPFNIDMFCRLLSKDPVQLESKCWNTCIRLPFRTKFSE---GIAMNNIV 1361 (2109)
Q Consensus 1289 P~I~SGG----YsFkFD~~d~~LG~IlP~wv~P~~~~~isrils~~~~~~~~~~~~T~IrLPLRse~S~---~~~v~sI~ 1361 (2109)
|.|.|.+ |.|.-+.+ -.|.+-.-..+- .+ .......+|.|+|.|+.+..+ ...+.+|.
T Consensus 192 V~V~Sk~dd~~~~WeS~g~---gsfti~~~~~~~-----------~~-~g~~~~~GT~I~L~Lked~~e~le~~~ik~li 256 (272)
T 3ied_A 192 VEVYTKKEDQIYRWSSDLK---GSFSVNEIKKYD-----------QE-YDDIKGSGTKIILHLKEECDEYLEDYKLKELI 256 (272)
T ss_dssp EEEEEESSSCEEEEEECSS---SEEEEEECTTCT-----------TC-C--CCSSEEEEEEEECGGGGGGGSHHHHHHHH
T ss_pred EEEEEcCCCceEEEEECCC---CCEEEEECcccc-----------cc-cCCCCCCCcEEEEEECCChHHhcCHHHHHHHH
Confidence 9998852 44443321 112111000000 00 001345699999999886433 33456666
Q ss_pred HHhhh
Q 000132 1362 DMFSD 1366 (2109)
Q Consensus 1362 e~F~~ 1366 (2109)
+..++
T Consensus 257 kkys~ 261 (272)
T 3ied_A 257 KKYSE 261 (272)
T ss_dssp HHHCT
T ss_pred HHHHh
Confidence 66654
No 13
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=99.20 E-value=1.9e-11 Score=153.93 Aligned_cols=156 Identities=20% Similarity=0.308 Sum_probs=110.3
Q ss_pred HHHHHHHHHHhhhcCCCCcchhhcccccccCCC-------------CCCCCCcEEEEEeC--CeEEEEeCCCCCCHhhH-
Q 000132 1190 RLGRALHCLSQELYSQDSHFLLELVQNADDNIY-------------PENVEPTLTFILQE--SGIVVLNNEQGFSAENI- 1253 (2109)
Q Consensus 1190 ~lgrAL~~LS~eLYSsdtHFL~ELIQNADDN~Y-------------~e~v~PtLsF~L~d--d~LlV~NNE~GFTeeDI- 1253 (2109)
.+.+.+..|+..||++...||.||||||-||.- ..+..+.+.+.+.+ ..|.|..||.|.|.+|+
T Consensus 11 e~~~Ll~li~~sLYsnkeifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~~~~~I~I~DnGiGMt~edl~ 90 (677)
T 2cg9_A 11 EITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAELI 90 (677)
T ss_dssp CHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGGGTEEEEEECSCCCCHHHHH
T ss_pred hHHHHHHHHHHhCCCCchHHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeCCCCEEEEEECCCCCCHHHHH
Confidence 356678899999999999999999999999851 11223567777753 46999999999999996
Q ss_pred HHHHhccCccccC--------CCCCcccccccccceeccccCccEEecC-----CeEEEecCCCCccce-ecCcccCCCc
Q 000132 1254 RALCDVGNSTKKG--------SSAGYIGRKGIGFKSVFRVTDAPEIHSN-----GFHVKFDTSEGQIGF-VLPTLVPPFN 1319 (2109)
Q Consensus 1254 eAICsIG~STKkg--------~~~gyIGeKGIGFKSVF~VTD~P~I~SG-----GYsFkFD~~d~~LG~-IlP~wv~P~~ 1319 (2109)
.++..||.|.++. .....||+|||||.|+|.|+++|.|.|. +|.|..+.+ -.| +.|. +.
T Consensus 91 ~~l~tIA~Sgt~~f~~kl~~~~d~~~IGqFGvGFySaf~vadkV~V~Sk~~~~~~~~W~s~g~---~~~ti~~~---~~- 163 (677)
T 2cg9_A 91 NNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAG---GSFTVTLD---EV- 163 (677)
T ss_dssp GGGSSSSSCTTHHHHSCCCSSCCCCCCCCTTCTTGGGGGTEEEEEEEEECTTSCEEEEEECSS---SEEEEEEC---CS-
T ss_pred HHHHhHhccccHHHHHhhhcccchhhcCCCCchhHHHhhcCcEEEEEEccCCCceEEEEEcCC---ceEEEeec---CC-
Confidence 6899999996531 1236799999999999999999999885 355554321 111 1110 00
Q ss_pred hhhhhhcccCCCcccccCCCceEEEecCccccch---hhhHhHHHHHhhh
Q 000132 1320 IDMFCRLLSKDPVQLESKCWNTCIRLPFRTKFSE---GIAMNNIVDMFSD 1366 (2109)
Q Consensus 1320 ~~~isrils~~~~~~~~~~~~T~IrLPLRse~S~---~~~v~sI~e~F~~ 1366 (2109)
......||+|+|.|+.+..+ ...+.+|...+.+
T Consensus 164 --------------~~~~~~GT~I~L~Lk~d~~e~l~~~~i~~lvkkys~ 199 (677)
T 2cg9_A 164 --------------NERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSE 199 (677)
T ss_dssp --------------SCCCSSEEEEEEEECTTGGGGGCHHHHHHHHHHHST
T ss_pred --------------CCCCCCCeEEEEEEcchhhccccHHHHHHHHHHHHh
Confidence 01234689999999876433 3345566665554
No 14
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=99.16 E-value=1.7e-11 Score=154.31 Aligned_cols=155 Identities=25% Similarity=0.322 Sum_probs=93.7
Q ss_pred HHHHHHHHHHhhhcCCCCcchhhcccccccCC-------------CCCCCCCcEEEEEeC--CeEEEEeCCCCCCHhhH-
Q 000132 1190 RLGRALHCLSQELYSQDSHFLLELVQNADDNI-------------YPENVEPTLTFILQE--SGIVVLNNEQGFSAENI- 1253 (2109)
Q Consensus 1190 ~lgrAL~~LS~eLYSsdtHFL~ELIQNADDN~-------------Y~e~v~PtLsF~L~d--d~LlV~NNE~GFTeeDI- 1253 (2109)
.+.+.+..|+..||++...||.||||||-||. +..+....+.+.+.+ ..|.|..||.|+|.+|+
T Consensus 30 ei~~Ll~li~~sLYsn~eifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~~~~~I~I~DnGiGMt~edl~ 109 (666)
T 2o1u_A 30 EVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELV 109 (666)
T ss_dssp ----CCSSSTTTTSSSCTTHHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETTTTEEEEEECSCCCCHHHHH
T ss_pred hHHHHHHHHHHhccCCchHHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeCCCCEEEEEECCCCCCHHHHH
Confidence 56677888899999999999999999999985 111223567777654 46999999999999995
Q ss_pred HHHHhccCccccC-------------CCCCcccccccccceeccccCccEEecCC-----eEEEecCCCCccceecCccc
Q 000132 1254 RALCDVGNSTKKG-------------SSAGYIGRKGIGFKSVFRVTDAPEIHSNG-----FHVKFDTSEGQIGFVLPTLV 1315 (2109)
Q Consensus 1254 eAICsIG~STKkg-------------~~~gyIGeKGIGFKSVF~VTD~P~I~SGG-----YsFkFD~~d~~LG~IlP~wv 1315 (2109)
.++..||.|.|+. .....||.|||||.|+|.|+++|.|.|.. |.|.-+. |-+. +
T Consensus 110 ~~l~tIA~SGtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySaf~vAdkV~V~Sr~~~~~~~~W~s~g-----g~~t---i 181 (666)
T 2o1u_A 110 KNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-----NEFS---V 181 (666)
T ss_dssp HHTTC-------------------------------CTTGGGGGTEEEEEEEEECTTSCCEEEEESS-----SCCE---E
T ss_pred HHHhhhcccccHHHHHHhhhcccccccchhhccCCCcHHHhHHHhcCEEEEEEeeCCCceEEEEEeC-----CeEE---E
Confidence 7799999996542 12357999999999999999999998853 4444321 2110 0
Q ss_pred CCCchhhhhhcccCCCcccccCCCceEEEecCccccch---hhhHhHHHHHhh
Q 000132 1316 PPFNIDMFCRLLSKDPVQLESKCWNTCIRLPFRTKFSE---GIAMNNIVDMFS 1365 (2109)
Q Consensus 1316 ~P~~~~~isrils~~~~~~~~~~~~T~IrLPLRse~S~---~~~v~sI~e~F~ 1365 (2109)
.|.. .......||+|+|.|+.+..+ ...+.+|.+...
T Consensus 182 ~~~~-------------~~~~~~~GT~I~L~Lk~d~~Efle~~~I~~ivkkys 221 (666)
T 2o1u_A 182 IADP-------------RGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYS 221 (666)
T ss_dssp EECT-------------TCCSSSSEEEEEEEECTTTTTSSSTTHHHHHHHHHS
T ss_pred Eecc-------------cCCCCCCCeEEEEEEccchhhhccHHHHHHHHHHHH
Confidence 0000 001234689999999876443 344556665554
No 15
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=97.09 E-value=0.00024 Score=83.59 Aligned_cols=89 Identities=18% Similarity=0.203 Sum_probs=70.7
Q ss_pred HhhhcCCCCcchhhcccccccCCCCCCCCCcEEEEEeCC---eEEEEeCCCCCCHhhHHHHHhccCccccCC-----CCC
Q 000132 1199 SQELYSQDSHFLLELVQNADDNIYPENVEPTLTFILQES---GIVVLNNEQGFSAENIRALCDVGNSTKKGS-----SAG 1270 (2109)
Q Consensus 1199 S~eLYSsdtHFL~ELIQNADDN~Y~e~v~PtLsF~L~dd---~LlV~NNE~GFTeeDIeAICsIG~STKkg~-----~~g 1270 (2109)
|.+......++|.|||+||=||.. ..+.+.+..+ .|.|..||.|.+++|++.++.-..++|..+ ...
T Consensus 18 agevi~~~~~~v~ELi~NaidA~a-----~~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~~d~~~~~ 92 (333)
T 1b63_A 18 AGEVVERPASVVKELVENSLDAGA-----TRIDIDIERGGAKLIRIRDNGCGIKKDELALALARHATSKIASLDDLEAII 92 (333)
T ss_dssp HHHHCSSHHHHHHHHHHHHHHTTC-----SEEEEEEEGGGTSEEEEEECSCCCCGGGHHHHHSTTCCSSCCSHHHHHTCC
T ss_pred cCCchhCHHHHHHHHHHHHHHCCC-----CeEEEEEEeCCceEEEEEEcCCCcCHHHHHHhhhcccccCccccchhhhcc
Confidence 445556778899999999999753 4677777654 589999999999999999997665667532 123
Q ss_pred cccccccccceeccccCccEEec
Q 000132 1271 YIGRKGIGFKSVFRVTDAPEIHS 1293 (2109)
Q Consensus 1271 yIGeKGIGFKSVF~VTD~P~I~S 1293 (2109)
.+|.+|+|+.|++.++ .+.|.|
T Consensus 93 ~~G~~G~gl~si~~vs-~l~v~s 114 (333)
T 1b63_A 93 SLGFRGEALASISSVS-RLTLTS 114 (333)
T ss_dssp SSCCSSCHHHHHHTTS-EEEEEE
T ss_pred ccCccccchhhhhcCC-cEEEEE
Confidence 5899999999999999 788876
No 16
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=96.76 E-value=0.00063 Score=81.44 Aligned_cols=98 Identities=17% Similarity=0.237 Sum_probs=73.9
Q ss_pred HhhhcCCCCcchhhcccccccCCCCCCCCCcEEEEEeCC---eEEEEeCCCCCCHhhHHHHHhccCccccCC-----CCC
Q 000132 1199 SQELYSQDSHFLLELVQNADDNIYPENVEPTLTFILQES---GIVVLNNEQGFSAENIRALCDVGNSTKKGS-----SAG 1270 (2109)
Q Consensus 1199 S~eLYSsdtHFL~ELIQNADDN~Y~e~v~PtLsF~L~dd---~LlV~NNE~GFTeeDIeAICsIG~STKkg~-----~~g 1270 (2109)
|.+.-..-.+.|.|||+||=||.. ..+.+.+.++ .|.|..||.|.++++++.+|.-+-+||... ...
T Consensus 19 agevi~~~~~vv~eLv~NaiDA~a-----~~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~~Dl~~i~ 93 (367)
T 3h4l_A 19 SGQVITDLTTAVKELVDNSIDANA-----NQIEIIFKDYGLESIECSDNGDGIDPSNYEFLALKHYTSKIAKFQDVAKVQ 93 (367)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHTTC-----SEEEEEEETTTTSEEEEEECSCCCCGGGTTTTTCCEEC---------CCCC
T ss_pred CCCcccCHHHHHHHHHHHHHHCCC-----CEEEEEEEeCCEEEEEEEECCCCcChhHhccceeccccCcCCchhhhhhhh
Confidence 344455667899999999999852 4677777644 489999999999999999999888888754 123
Q ss_pred cccccccccceeccccCccEEecC-----CeEEEecC
Q 000132 1271 YIGRKGIGFKSVFRVTDAPEIHSN-----GFHVKFDT 1302 (2109)
Q Consensus 1271 yIGeKGIGFKSVF~VTD~P~I~SG-----GYsFkFD~ 1302 (2109)
..|..|.|+-|++.|+ .+.|.|. +|.+.|+.
T Consensus 94 t~GfrGeaL~Si~avS-~l~V~sr~~~~~~~~~~~~~ 129 (367)
T 3h4l_A 94 TLGFRGEALSSLCGIA-KLSVITTTSPPKADKLEYDM 129 (367)
T ss_dssp EEEETTHHHHHHHHSS-EEEEEEESSTTCEEEEEECT
T ss_pred ccCccchHHHHhhccC-EEEEEEEECCCCEEEEEEcC
Confidence 3599999999999999 5998662 57888864
No 17
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=96.50 E-value=0.00052 Score=81.91 Aligned_cols=98 Identities=23% Similarity=0.248 Sum_probs=70.7
Q ss_pred HhhhcCCCCcchhhcccccccCCCCCCCCCcEEEEEeCC---eEEEEeCCCCCCHhhHHHHHhccCccccCC--C---CC
Q 000132 1199 SQELYSQDSHFLLELVQNADDNIYPENVEPTLTFILQES---GIVVLNNEQGFSAENIRALCDVGNSTKKGS--S---AG 1270 (2109)
Q Consensus 1199 S~eLYSsdtHFL~ELIQNADDN~Y~e~v~PtLsF~L~dd---~LlV~NNE~GFTeeDIeAICsIG~STKkg~--~---~g 1270 (2109)
|.+....-.++|.|||.||=||.. ..+.+.+..+ .|.|..||.|.+++|++.++.-...+|... . .+
T Consensus 28 agevi~~~~~vl~eLv~NAiDA~a-----~~I~I~i~~~~~~~I~V~DnG~Gi~~~~l~~~f~~~~tsK~~~~~dl~~i~ 102 (365)
T 1h7s_A 28 SGQVVLSLSTAVKELVENSLDAGA-----TNIDLKLKDYGVDLIEVSDNGCGVEEENFEGLTLKHHTSKIQEFADLTQVE 102 (365)
T ss_dssp -CEEECCHHHHHHHHHHHHHHTTC-----SEEEEEEEGGGTSEEEEEECSCCCCGGGSGGGGC----------CCTTCSE
T ss_pred CCCchhhHHHHHHHHHHHHHHCCC-----CEEEEEEEeCCcEEEEEEECCCCcCHHHHHHHhhhccccccccccchhccc
Confidence 445556668899999999999742 4677777643 589999999999999999998877777653 1 12
Q ss_pred cccccccccceeccccCccEEecC------CeEEEecC
Q 000132 1271 YIGRKGIGFKSVFRVTDAPEIHSN------GFHVKFDT 1302 (2109)
Q Consensus 1271 yIGeKGIGFKSVF~VTD~P~I~SG------GYsFkFD~ 1302 (2109)
..|.+|+|+-|++.++ .+.|.|. +|.+.|++
T Consensus 103 s~G~rG~gl~si~~vs-~v~v~t~~~~~~~~~~~~~~~ 139 (365)
T 1h7s_A 103 TFGFRGEALSSLCALS-DVTISTCHASAKVGTRLMFDH 139 (365)
T ss_dssp EESSSSSHHHHHHHHS-EEEEEEECTTCSSCEEEEECT
T ss_pred ccCCCCchhhhhhhhc-cEEEEEccCCCcceEEEEEcC
Confidence 3699999999999999 8998652 68888874
No 18
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=96.29 E-value=0.0031 Score=75.07 Aligned_cols=97 Identities=20% Similarity=0.373 Sum_probs=75.0
Q ss_pred hhhcCCCCcchhhcccccccCCCCCCCCCcEEEEEeCCe---EEEEeCCCCCCHhhHHHHHhccCccccCCC-----CCc
Q 000132 1200 QELYSQDSHFLLELVQNADDNIYPENVEPTLTFILQESG---IVVLNNEQGFSAENIRALCDVGNSTKKGSS-----AGY 1271 (2109)
Q Consensus 1200 ~eLYSsdtHFL~ELIQNADDN~Y~e~v~PtLsF~L~dd~---LlV~NNE~GFTeeDIeAICsIG~STKkg~~-----~gy 1271 (2109)
.+.-..-.+.|.|||+||=|+.. ..+.+.+.+++ |.|..||.|.++++++.+|.-+-++|.... ...
T Consensus 23 gevi~~~~~vv~eLv~NAidA~a-----~~I~I~i~~~~~~~I~V~DnG~GI~~~~l~~~~~~~~tsK~~~~~dl~~i~s 97 (348)
T 3na3_A 23 GEVIQRPANAIKEMIENCLDAKS-----TSIQVIVKEGGLKLIQIQDNGTGIRKEDLDIVCERFTTSKLQSFEDLASIST 97 (348)
T ss_dssp HHHCCSHHHHHHHHHHHHHHTTC-----SEEEEEEEGGGTSEEEEEECSCCCCGGGGGTTTSTTCCSSCCCC--------
T ss_pred cCcccCHHHHHHHHHHHHHHcCC-----CEEEEEEEeCCEEEEEEEECCcCcChHHhhhhhccccccccCcchhhhcccc
Confidence 34445557899999999999842 46777776543 889999999999999999999999997541 123
Q ss_pred ccccccccceeccccCccEEec---C---CeEEEecC
Q 000132 1272 IGRKGIGFKSVFRVTDAPEIHS---N---GFHVKFDT 1302 (2109)
Q Consensus 1272 IGeKGIGFKSVF~VTD~P~I~S---G---GYsFkFD~ 1302 (2109)
.|.+|.|+-|+..|+ .+.|.| + +|.+.|+.
T Consensus 98 ~GfrGeaL~Si~avs-~l~v~sr~~~~~~~~~~~~~~ 133 (348)
T 3na3_A 98 YGFRGEALASISHVA-HVTITTKTADGKCAYRASYSD 133 (348)
T ss_dssp -CCTTCHHHHHHHSS-EEEEEEECTTCSSEEEEEEET
T ss_pred CCcCChHHHHhhccc-EEEEEEEECCCCceEEEEEeC
Confidence 599999999999999 788866 2 57777763
No 19
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=95.32 E-value=0.0076 Score=74.29 Aligned_cols=85 Identities=19% Similarity=0.240 Sum_probs=66.0
Q ss_pred cchhhcccccccCCCCCCCCCcEEEEEeCC-------eEEEEeCCCCCCHhhHHHHHhcc-CccccCCCCCccccccccc
Q 000132 1208 HFLLELVQNADDNIYPENVEPTLTFILQES-------GIVVLNNEQGFSAENIRALCDVG-NSTKKGSSAGYIGRKGIGF 1279 (2109)
Q Consensus 1208 HFL~ELIQNADDN~Y~e~v~PtLsF~L~dd-------~LlV~NNE~GFTeeDIeAICsIG-~STKkg~~~gyIGeKGIGF 1279 (2109)
+.|.|||.||=|+....+..|.+.+.+... .|.|.+||.|+++++++.|..-. .++|.... ...|..|+|.
T Consensus 35 qvl~nLv~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~~-~~~gg~GLGL 113 (471)
T 1mu5_A 35 QTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNR-QTRGMYGLGV 113 (471)
T ss_dssp HHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CCCCS-CCSCSCTTTH
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEEEECCCcCcEEEEEEEECCCCCCHHHHHHHhcccccccccccc-cCCCCceeeH
Confidence 356899999999876555556888877653 37899999999999999999876 56664321 3468899999
Q ss_pred ceeccccCc-----cEEec
Q 000132 1280 KSVFRVTDA-----PEIHS 1293 (2109)
Q Consensus 1280 KSVF~VTD~-----P~I~S 1293 (2109)
.+|..+++. ..|.|
T Consensus 114 ~iv~~l~~~~gG~~i~v~S 132 (471)
T 1mu5_A 114 KAAVLYSQMHQDKPIEIET 132 (471)
T ss_dssp HHHHHHHHHHCCCCEEEEE
T ss_pred HHHHHHHHHhCCCceeEEE
Confidence 999999986 77766
No 20
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=94.52 E-value=0.018 Score=72.08 Aligned_cols=85 Identities=19% Similarity=0.244 Sum_probs=66.4
Q ss_pred cchhhcccccccCCCCCCCCCcEEEEEeCC-------eEEEEeCCCCCCHhhHHHHHhcc-CccccCCCCCccccccccc
Q 000132 1208 HFLLELVQNADDNIYPENVEPTLTFILQES-------GIVVLNNEQGFSAENIRALCDVG-NSTKKGSSAGYIGRKGIGF 1279 (2109)
Q Consensus 1208 HFL~ELIQNADDN~Y~e~v~PtLsF~L~dd-------~LlV~NNE~GFTeeDIeAICsIG-~STKkg~~~gyIGeKGIGF 1279 (2109)
+.|.|||.||=|+....+..|.+.+.+..+ .|.|.+||.|+++++++.|..-. .++|.... ...|..|+|.
T Consensus 34 qvl~NLV~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~~-~~~gg~GLGL 112 (530)
T 2zbk_B 34 QTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNR-QTRGMYGLGV 112 (530)
T ss_dssp HHHHHHHHHHHTTTTTTTCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCCCCS-CCSCSSSSHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEEEEECCCcCceEEEEEEECCCCCCHHHHHHHhccccccCCcccc-cCCCCccchH
Confidence 457899999999877655556777777543 37899999999999999999887 55554321 3468899999
Q ss_pred ceeccccC-----ccEEec
Q 000132 1280 KSVFRVTD-----APEIHS 1293 (2109)
Q Consensus 1280 KSVF~VTD-----~P~I~S 1293 (2109)
-+|..+++ ...|.|
T Consensus 113 siv~~l~~~~gG~~I~V~S 131 (530)
T 2zbk_B 113 KAAVLYSQMHQDKPIEIET 131 (530)
T ss_dssp HHHHHHHHHHCCCCEEEEE
T ss_pred HHHHHHHHHhCCCceEEEE
Confidence 99999988 577765
No 21
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=94.01 E-value=0.035 Score=70.62 Aligned_cols=93 Identities=17% Similarity=0.203 Sum_probs=66.4
Q ss_pred cchhhcccccccCCCCCCCCCcEEEEEeCC-----eEEEEeCCCCCCHhhHHHHHhccCccccC-CCCCcccccccccce
Q 000132 1208 HFLLELVQNADDNIYPENVEPTLTFILQES-----GIVVLNNEQGFSAENIRALCDVGNSTKKG-SSAGYIGRKGIGFKS 1281 (2109)
Q Consensus 1208 HFL~ELIQNADDN~Y~e~v~PtLsF~L~dd-----~LlV~NNE~GFTeeDIeAICsIG~STKkg-~~~gyIGeKGIGFKS 1281 (2109)
|.|.|||.||=|+....+..+.+.+.+..+ .|.|.+||.|.++++++.|....-+|.+- .....-|..|+|..+
T Consensus 40 ~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~~~~~~~I~V~DnG~GIp~e~l~~iF~~~~atskf~~~~~s~Gg~GlGLsi 119 (621)
T 2q2e_B 40 TTVKEAVDNALDACEEAGILPDILVQVERTGPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSRGQQGIGISA 119 (621)
T ss_dssp HHHHHHHHHHHHHHTTTSCSCEEEECCEEETTTEEEEEEECCSCCCCGGGHHHHHSCCCCC--CCCCC-CCSSSSHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCcEEEEEEEECCCcEEEEEEEECCCCCCHHHHHHHhhhhccCCccccccccCCCceechhh
Confidence 457899999999876555556788776543 37899999999999999999766444331 111224889999999
Q ss_pred eccccCcc-----EEec--C----CeEEEe
Q 000132 1282 VFRVTDAP-----EIHS--N----GFHVKF 1300 (2109)
Q Consensus 1282 VF~VTD~P-----~I~S--G----GYsFkF 1300 (2109)
|..++..- .|.| + +|.|.|
T Consensus 120 v~~ls~~~gG~~I~V~S~~~gg~~g~~~~~ 149 (621)
T 2q2e_B 120 AVLYAQMTAGRHTKILSKTSPTAPAHYYEL 149 (621)
T ss_dssp HHHHHHHHTCCCCEEEEECSSSSCEEEEEC
T ss_pred hhHHHHHhCCCceeEEeeccCCccceEEEE
Confidence 99998873 6654 2 466666
No 22
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=88.68 E-value=0.17 Score=56.16 Aligned_cols=94 Identities=18% Similarity=0.397 Sum_probs=57.4
Q ss_pred CcchhhcccccccCCCCCCCCCcEEEEEeC-CeEEEEeCCCCCCHhh--------HHHH-HhccCccccCCC--CCcccc
Q 000132 1207 SHFLLELVQNADDNIYPENVEPTLTFILQE-SGIVVLNNEQGFSAEN--------IRAL-CDVGNSTKKGSS--AGYIGR 1274 (2109)
Q Consensus 1207 tHFL~ELIQNADDN~Y~e~v~PtLsF~L~d-d~LlV~NNE~GFTeeD--------IeAI-CsIG~STKkg~~--~gyIGe 1274 (2109)
.|.|+|||.||=||.-. +....+.+.+.+ +.|.|.+||+|...++ ++-| |....++|-.+. .-.-|.
T Consensus 19 ~~~v~Elv~NsiDa~~~-g~a~~I~V~i~~~g~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~hatsK~~~~~~~~s~Gf 97 (201)
T 3fv5_A 19 NHLGQEVIDNSVDEALA-GHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGL 97 (201)
T ss_dssp HHHHHHHHHHHHHHHHT-TCCSEEEEEECTTSCEEEEECSSCCCCSBCTTCSSBHHHHHHHCC-----------------
T ss_pred hhhhHHHHHHHHHHHhc-CCCcEEEEEEeCCCEEEEEECCCCcCcccccccCcchhheeeeeeccccCcCCCcccccCcc
Confidence 57999999999999332 123578888874 4689999999999988 6774 788888886541 113589
Q ss_pred cccccceeccccCccEEec--CC--eEEEec
Q 000132 1275 KGIGFKSVFRVTDAPEIHS--NG--FHVKFD 1301 (2109)
Q Consensus 1275 KGIGFKSVF~VTD~P~I~S--GG--YsFkFD 1301 (2109)
-|.|-+||-.++....|.+ +| |...|.
T Consensus 98 rGeglssinalS~~l~v~t~~~g~~~~~~~~ 128 (201)
T 3fv5_A 98 HGVGISVVNALSKRVEVNVRRDGQVYNIAFE 128 (201)
T ss_dssp ----CHHHHHTEEEEEEEEEETTEEEEEEEE
T ss_pred cceecchhhcccceEEEEEEecCceEEEEEe
Confidence 9999999999998777643 33 555664
No 23
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=82.71 E-value=0.26 Score=59.52 Aligned_cols=95 Identities=18% Similarity=0.295 Sum_probs=65.8
Q ss_pred CcchhhcccccccCCCCCCCCCcEEEEEeC-CeEEEEeCCCCCCHhhHHH--------HH-hccCccccCCC--CCcccc
Q 000132 1207 SHFLLELVQNADDNIYPENVEPTLTFILQE-SGIVVLNNEQGFSAENIRA--------LC-DVGNSTKKGSS--AGYIGR 1274 (2109)
Q Consensus 1207 tHFL~ELIQNADDN~Y~e~v~PtLsF~L~d-d~LlV~NNE~GFTeeDIeA--------IC-sIG~STKkg~~--~gyIGe 1274 (2109)
.|.|.|||-||=||.-. +..+.+.+.+.. +.|.|.+||.|...++... |. ....++|-++. ....|.
T Consensus 34 ~~~v~Elv~N~iD~a~~-~~~~~I~V~i~~~~~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~~~~~kf~~~~~~~s~G~ 112 (390)
T 1kij_A 34 HHLFKEILDNAVDEALA-GYATEILVRLNEDGSLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFEQGAYKVSGGL 112 (390)
T ss_dssp HHHHHHHHHHHHHHHHT-TSCCEEEEEECTTSCEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEESGGGGSSCCCCSCS
T ss_pred HHHHHHHHHHHHHHhhh-CCCCEEEEEEEcCCEEEEEEcCCCCCHHHhhhccccchhhheeeeeecccccCccccccCCC
Confidence 46789999999998622 224678888864 4689999999999998643 44 34444453211 113488
Q ss_pred cccccceeccccCccEEec--CC--eEEEecC
Q 000132 1275 KGIGFKSVFRVTDAPEIHS--NG--FHVKFDT 1302 (2109)
Q Consensus 1275 KGIGFKSVF~VTD~P~I~S--GG--YsFkFD~ 1302 (2109)
.|+|..+|..+++...|.+ +| |...|..
T Consensus 113 ~G~Gls~v~als~~~~v~t~~~g~~~~~~~~~ 144 (390)
T 1kij_A 113 HGVGASVVNALSEWTVVEVFREGKHHRIAFSR 144 (390)
T ss_dssp STTSHHHHHHTEEEEEEEEEETTEEEEEEEET
T ss_pred CCcceeeecccccceEEEEecCCcEEEEEEcC
Confidence 9999999999998666543 43 5666654
No 24
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=81.87 E-value=0.85 Score=45.96 Aligned_cols=78 Identities=21% Similarity=0.250 Sum_probs=51.6
Q ss_pred chhhcccccccCCCCCCCCCcEEEEE--eCCe--EEEEeCCCCCCHhhHHHHHhccCccccCCCCCcccccccccceecc
Q 000132 1209 FLLELVQNADDNIYPENVEPTLTFIL--QESG--IVVLNNEQGFSAENIRALCDVGNSTKKGSSAGYIGRKGIGFKSVFR 1284 (2109)
Q Consensus 1209 FL~ELIQNADDN~Y~e~v~PtLsF~L--~dd~--LlV~NNE~GFTeeDIeAICsIG~STKkg~~~gyIGeKGIGFKSVF~ 1284 (2109)
.+.|||.||=...+.....+.+.+.+ .++. +.|.+||.||+ +++.|..-..++|.. .+..|+|-.-|-.
T Consensus 43 il~~l~~Nai~h~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~g~~--~~~~~~~~~~~~~~~-----~~~~GlGL~iv~~ 115 (145)
T 1th8_A 43 VVSEAVTNAIIHGYNNDPNGIVSISVIIEDGVVHLTVRDEGVGIP--DIEEARQPLFTTKPE-----LERSGMGFTIMEN 115 (145)
T ss_dssp HHHHHHHHHHHTTSTTCTTSEEEEEEEEETTEEEEEEEECSSCCS--CHHHHTCCC------------CCCSCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEEEEeCCEEEEEEEECCCCcC--hHHHhhcccccCCCC-----CCCCcchHHHHHH
Confidence 35678888876655432235555544 4555 56889999999 888888887777752 2457999999999
Q ss_pred ccCccEEec
Q 000132 1285 VTDAPEIHS 1293 (2109)
Q Consensus 1285 VTD~P~I~S 1293 (2109)
+.+...|.|
T Consensus 116 ~~~~i~~~~ 124 (145)
T 1th8_A 116 FMDEVIVES 124 (145)
T ss_dssp HSSEEEEEE
T ss_pred HHheEEEEe
Confidence 999766665
No 25
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=74.27 E-value=1.1 Score=47.06 Aligned_cols=72 Identities=17% Similarity=0.246 Sum_probs=35.4
Q ss_pred chhhcccccccCCCCCCCCCcEEEEEeCCeEEEEeCCCCCCHhhHHHHHhccCccccCCCCCcccccccccceeccccC
Q 000132 1209 FLLELVQNADDNIYPENVEPTLTFILQESGIVVLNNEQGFSAENIRALCDVGNSTKKGSSAGYIGRKGIGFKSVFRVTD 1287 (2109)
Q Consensus 1209 FL~ELIQNADDN~Y~e~v~PtLsF~L~dd~LlV~NNE~GFTeeDIeAICsIG~STKkg~~~gyIGeKGIGFKSVF~VTD 1287 (2109)
.+.+||.||=...-. ...+.+.+..+.+.|.+||.|+++++++.|.+-..+++... .+..|+|-.-|-.+..
T Consensus 121 il~nLl~NAi~~~~~---~~~i~i~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~----~~g~GlGL~i~~~i~~ 192 (222)
T 3jz3_A 121 LVRNLLDNAVRYSPQ---GSVVDVTLNADNFIVRDNGPGVTPEALARIGERFYRPPGQT----ATGSGLGLSIVQRIAK 192 (222)
T ss_dssp HHHHHHHHHHHTCCT---TCEEEEEECSSEEEEECSCC------------------------------CTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC---CCeEEEEEccCeEEEEECCCCCCHHHHHHHHhhhccCCCCC----CCcccccHHHHHHHHH
Confidence 556888888876432 24588888888899999999999999999998887766432 2457999887777664
No 26
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=72.40 E-value=1.2 Score=45.44 Aligned_cols=72 Identities=18% Similarity=0.207 Sum_probs=51.5
Q ss_pred chhhcccccccCCCCCCCCCcEEEEE--eCCe--EEEEeCCCCCCHhhHHHHHhccCccccCCCCCcccccccccceecc
Q 000132 1209 FLLELVQNADDNIYPENVEPTLTFIL--QESG--IVVLNNEQGFSAENIRALCDVGNSTKKGSSAGYIGRKGIGFKSVFR 1284 (2109)
Q Consensus 1209 FL~ELIQNADDN~Y~e~v~PtLsF~L--~dd~--LlV~NNE~GFTeeDIeAICsIG~STKkg~~~gyIGeKGIGFKSVF~ 1284 (2109)
.+.+||.||=... .+.+.+.+ .++. |.|.+|+.|+++++++.|-.-..+++.... -+..|+|-.-|-.
T Consensus 51 il~nll~NAik~~-----~~~I~i~~~~~~~~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~~~~---~~g~GlGL~i~~~ 122 (161)
T 1bxd_A 51 AVANMVVNAARYG-----NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSART---ISGTGLGLAIVQR 122 (161)
T ss_dssp HHHHHHHHHHTTC-----CSCEEEEEEEETTEEEEEEEEESSCSCTTGGGCSSCCCCCCSCCCC---CCCCSCCCCTTHH
T ss_pred HHHHHHHHHHhhc-----CCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHhCCCceeCCCCCC---CCCcccCHHHHHH
Confidence 4457888886544 24555554 4444 678899999999999999888877776432 2568999988877
Q ss_pred ccCc
Q 000132 1285 VTDA 1288 (2109)
Q Consensus 1285 VTD~ 1288 (2109)
+...
T Consensus 123 ~~~~ 126 (161)
T 1bxd_A 123 IVDN 126 (161)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 27
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=71.05 E-value=2.3 Score=42.55 Aligned_cols=69 Identities=16% Similarity=0.243 Sum_probs=48.0
Q ss_pred chhhcccccccCCCCCCCCCcEEEEE--eCCe--EEEEeCCCCCCHhhHHHHHhccCccccCCCCCcccccccccceecc
Q 000132 1209 FLLELVQNADDNIYPENVEPTLTFIL--QESG--IVVLNNEQGFSAENIRALCDVGNSTKKGSSAGYIGRKGIGFKSVFR 1284 (2109)
Q Consensus 1209 FL~ELIQNADDN~Y~e~v~PtLsF~L--~dd~--LlV~NNE~GFTeeDIeAICsIG~STKkg~~~gyIGeKGIGFKSVF~ 1284 (2109)
.+.+||.||=.... +.+.+.+ .++. +.|.+||.|+++++++.|-.-..+++... +..|+|..-|-.
T Consensus 48 il~nLl~NAi~~~~-----~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~~-----~g~GlGL~i~~~ 117 (152)
T 1id0_A 48 VMGNVLDNACKYCL-----EFVEISARQTDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTLR-----PGQGVGLAVARE 117 (152)
T ss_dssp HHHHHHHHHHHHCS-----SEEEEEEEECSSCEEEEEEESSSCCCGGGTTGGGSCCCCTTCCC-----TTCCSCHHHHHH
T ss_pred HHHHHHHHHHHhCc-----CeEEEEEEecCCEEEEEEEeCCCCcCHHHHHHHhccceeccCCC-----CCcccCHHHHHH
Confidence 34477777766432 1454444 3443 67889999999999999988777766532 457999888877
Q ss_pred ccC
Q 000132 1285 VTD 1287 (2109)
Q Consensus 1285 VTD 1287 (2109)
+..
T Consensus 118 ~~~ 120 (152)
T 1id0_A 118 ITE 120 (152)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 28
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=70.86 E-value=2 Score=52.07 Aligned_cols=95 Identities=18% Similarity=0.395 Sum_probs=68.2
Q ss_pred CcchhhcccccccCCCCCCCCCcEEEEEeC-CeEEEEeCCCCCCHhh--------HHHH-HhccCccccCCCC--Ccccc
Q 000132 1207 SHFLLELVQNADDNIYPENVEPTLTFILQE-SGIVVLNNEQGFSAEN--------IRAL-CDVGNSTKKGSSA--GYIGR 1274 (2109)
Q Consensus 1207 tHFL~ELIQNADDN~Y~e~v~PtLsF~L~d-d~LlV~NNE~GFTeeD--------IeAI-CsIG~STKkg~~~--gyIGe 1274 (2109)
.|.|+|||-||=||.-. +....+.+.+.. +.|.|.+||+|-..++ ++-| +....++|-++.. -.-|.
T Consensus 33 ~~lv~ElvdNsiD~a~~-g~a~~I~V~i~~~g~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhagsKf~~~~~~~sgGl 111 (390)
T 1s16_A 33 NHLGQEVIDNSVDEALA-GHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGL 111 (390)
T ss_dssp HHHHHHHHHHHHHHHHT-TCCSEEEEEECTTSCEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEESCSSSSSCSSCSCC
T ss_pred HHHHHHHHHHHHHHHhc-CCCCEEEEEEecCCEEEEEECCCCcCcccccccCcchhhheeeeecccCCcCCCcccccCCc
Confidence 36899999999998432 234678888874 5688999999999988 6775 5557777754311 12488
Q ss_pred cccccceeccccCccEE--ecCC--eEEEecC
Q 000132 1275 KGIGFKSVFRVTDAPEI--HSNG--FHVKFDT 1302 (2109)
Q Consensus 1275 KGIGFKSVF~VTD~P~I--~SGG--YsFkFD~ 1302 (2109)
-|+|=++|=.++....| ..+| |...|..
T Consensus 112 ~GvGls~vnalS~~l~v~~~r~g~~~~~~~~~ 143 (390)
T 1s16_A 112 HGVGISVVNALSKRVEVNVRRDGQVYNIAFEN 143 (390)
T ss_dssp SSCHHHHHHHTEEEEEEEEEETTEEEEEEEET
T ss_pred cccchHHHHHhhcccEEEEEECCcEEEEEEeC
Confidence 99999999999875554 4344 5566654
No 29
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=68.09 E-value=3.8 Score=41.03 Aligned_cols=70 Identities=14% Similarity=0.166 Sum_probs=43.4
Q ss_pred hhhcccccccCCCCCCCCCcEEEEE--eCCe--EEEEeCCCCCCHhhHHHHHhccCccccCCCCCcccccccccceeccc
Q 000132 1210 LLELVQNADDNIYPENVEPTLTFIL--QESG--IVVLNNEQGFSAENIRALCDVGNSTKKGSSAGYIGRKGIGFKSVFRV 1285 (2109)
Q Consensus 1210 L~ELIQNADDN~Y~e~v~PtLsF~L--~dd~--LlV~NNE~GFTeeDIeAICsIG~STKkg~~~gyIGeKGIGFKSVF~V 1285 (2109)
+.+||.||=..... +.+.+.+ .++. +.|.+|+.|+++++.+.|-.-...++... -+..|+|..-|-.+
T Consensus 51 l~nLl~NA~~~~~~----~~I~i~~~~~~~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~~~----~~g~GlGL~i~~~~ 122 (150)
T 1ysr_A 51 VDNAIANAVKHGGA----TLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTAS----HSGSGLGLALVAQQ 122 (150)
T ss_dssp HHHHHHHHHHTTCC----SEEEEEEEEETTEEEEEEEESSSCCCGGGHHHHHTSCC---------------CCCHHHHHH
T ss_pred HHHHHHHHHhcCCC----cEEEEEEEecCCEEEEEEEECCCCCCHHHHHHHhcccccCCCCC----CCCCCcCHHHHHHH
Confidence 45788888765321 2555554 3444 67889999999999999988766543321 24579999888887
Q ss_pred cC
Q 000132 1286 TD 1287 (2109)
Q Consensus 1286 TD 1287 (2109)
..
T Consensus 123 ~~ 124 (150)
T 1ysr_A 123 AQ 124 (150)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 30
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=67.97 E-value=2 Score=52.19 Aligned_cols=95 Identities=16% Similarity=0.267 Sum_probs=68.1
Q ss_pred CcchhhcccccccCCCCCCCCCcEEEEEeC-CeEEEEeCCCCCCHhh--------HH-HHHhccCccccCCCC--Ccccc
Q 000132 1207 SHFLLELVQNADDNIYPENVEPTLTFILQE-SGIVVLNNEQGFSAEN--------IR-ALCDVGNSTKKGSSA--GYIGR 1274 (2109)
Q Consensus 1207 tHFL~ELIQNADDN~Y~e~v~PtLsF~L~d-d~LlV~NNE~GFTeeD--------Ie-AICsIG~STKkg~~~--gyIGe 1274 (2109)
.|.|+|||-||=|+.-. +-...+...+.. +.|.|.+||+|-..++ ++ ..+....++|-++.. -.-|.
T Consensus 36 ~~lv~ElvdNsiDea~~-g~a~~I~V~i~~~g~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lhagsKf~~~~~~vSgGl 114 (391)
T 1ei1_A 36 HHMVFEVVDNAIDEALA-GHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 114 (391)
T ss_dssp HHHHHHHHHHHHHHHHT-TCCCEEEEEECTTSCEEEEECSSCCCCSBCTTTSSBHHHHHHHSTTEESCSSSSSCSSCSCC
T ss_pred HHHHHHHHHhHHHHHhc-CCCCEEEEEEeCCCEEEEEECCCCcccCcccccCcchHHHhheeccccCCcCCCcccccCCc
Confidence 46899999999998422 223678888874 5688999999999888 45 456577777765421 12488
Q ss_pred cccccceeccccCccEE--ecCC--eEEEecC
Q 000132 1275 KGIGFKSVFRVTDAPEI--HSNG--FHVKFDT 1302 (2109)
Q Consensus 1275 KGIGFKSVF~VTD~P~I--~SGG--YsFkFD~ 1302 (2109)
-|+|=++|=.++....| ..+| |...|.+
T Consensus 115 ~GvGls~vnalS~~l~v~~~r~g~~~~~~~~~ 146 (391)
T 1ei1_A 115 HGVGVSVVNALSQKLELVIQREGKIHRQIYEH 146 (391)
T ss_dssp SSCHHHHHHHTEEEEEEEEEETTEEEEEEEET
T ss_pred cccchHHHHHhcCeEEEEEEeCCcEEEEEEcC
Confidence 99999999999875555 3344 5666654
No 31
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=66.09 E-value=1.7 Score=45.09 Aligned_cols=77 Identities=17% Similarity=0.211 Sum_probs=49.4
Q ss_pred chhhcccccccCCCCCCCCCcEEEEEe--CCe--EEEEeCCCCCCHhhHHHHHhccCccccCCCCCcccccccccceecc
Q 000132 1209 FLLELVQNADDNIYPENVEPTLTFILQ--ESG--IVVLNNEQGFSAENIRALCDVGNSTKKGSSAGYIGRKGIGFKSVFR 1284 (2109)
Q Consensus 1209 FL~ELIQNADDN~Y~e~v~PtLsF~L~--dd~--LlV~NNE~GFTeeDIeAICsIG~STKkg~~~gyIGeKGIGFKSVF~ 1284 (2109)
.|.+||.||=......+ ...+.+.+. ++. |.|.+||.|+++++++.|..-..+++.... ...+..|+|..-|-.
T Consensus 47 il~nLl~NAi~~~~~~~-~i~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~~~-~~~~g~GlGL~iv~~ 124 (177)
T 3sl2_A 47 VLDNIISNALKYSPEGG-HVTFSIDVNEEEELLYISVKDEGIGIPKKDVEKVFDRFYRVDKART-RKLGGTGLGLAIAKE 124 (177)
T ss_dssp HHHHHHHHHHHTCCTTC-CEEEEEEEETTTTEEEEEEECCSSCCCTTTTTTTTSTTCCCC-------CCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCC-eEEEEEEEccCCCEEEEEEEECCCCCCHHHHHHHHhhhccCCCCCC-CCCCCCCcCHHHHHH
Confidence 56678888877653321 223444333 333 678899999999999999888776665432 234568999888877
Q ss_pred ccC
Q 000132 1285 VTD 1287 (2109)
Q Consensus 1285 VTD 1287 (2109)
+..
T Consensus 125 ~~~ 127 (177)
T 3sl2_A 125 MVQ 127 (177)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 32
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=64.16 E-value=2.5 Score=47.91 Aligned_cols=94 Identities=19% Similarity=0.351 Sum_probs=63.2
Q ss_pred cchhhcccccccCCCCCCCCCcEEEEEeC-CeEEEEeCCCCCCHhh-------HHHH-HhccCccccCCC--CCcccccc
Q 000132 1208 HFLLELVQNADDNIYPENVEPTLTFILQE-SGIVVLNNEQGFSAEN-------IRAL-CDVGNSTKKGSS--AGYIGRKG 1276 (2109)
Q Consensus 1208 HFL~ELIQNADDN~Y~e~v~PtLsF~L~d-d~LlV~NNE~GFTeeD-------IeAI-CsIG~STKkg~~--~gyIGeKG 1276 (2109)
|.++|+|-||-|+.-. +....+...+.. +.+.|.+|++|...++ ++.| |..-.++|-++. .-.-|.-|
T Consensus 43 ~~v~Eiv~NaiD~~~~-g~~~~I~V~i~~~g~i~V~DnG~GIp~~~h~~~~~~~e~v~t~lhag~Kfd~~~yk~SgGlhG 121 (226)
T 4emv_A 43 HLVWEIVDNAVDEALS-GFGDRIDVTINKDGSLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHG 121 (226)
T ss_dssp HHHHHHHHHHHHHHHT-TCCSEEEEEECTTSCEEEEECSSCCCCSBCGGGCBHHHHHHHCBC--------------CGGG
T ss_pred HHHHHHHHHHHHHHhc-CCCcEEEEEEeCCCeEEEEEcCCCccccccccCceehheeEEeecccCccCccceEecccccc
Confidence 6788999999998532 234678888874 4699999999999887 8876 567777786542 12258999
Q ss_pred cccceeccccCcc--EEecCC--eEEEecC
Q 000132 1277 IGFKSVFRVTDAP--EIHSNG--FHVKFDT 1302 (2109)
Q Consensus 1277 IGFKSVF~VTD~P--~I~SGG--YsFkFD~ 1302 (2109)
+|=++|=.++... .|+.+| |...|.+
T Consensus 122 vG~svvNALS~~l~v~v~r~g~~~~q~f~~ 151 (226)
T 4emv_A 122 VGSSVVNALSSWLEVEITRDGAVYKQRFEN 151 (226)
T ss_dssp CCHHHHHHTEEEEEEEEEETTEEEEEEEET
T ss_pred ccchhhhhcccceEEEEEeCCcEEEEEECC
Confidence 9999999998754 456666 4455653
No 33
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=62.28 E-value=2.6 Score=47.56 Aligned_cols=95 Identities=17% Similarity=0.269 Sum_probs=64.4
Q ss_pred CcchhhcccccccCCCCCCCCCcEEEEEeC-CeEEEEeCCCCCCHhh--------HHHH-HhccCccccCCC--CCcccc
Q 000132 1207 SHFLLELVQNADDNIYPENVEPTLTFILQE-SGIVVLNNEQGFSAEN--------IRAL-CDVGNSTKKGSS--AGYIGR 1274 (2109)
Q Consensus 1207 tHFL~ELIQNADDN~Y~e~v~PtLsF~L~d-d~LlV~NNE~GFTeeD--------IeAI-CsIG~STKkg~~--~gyIGe 1274 (2109)
.|.|+|||-||=|+.-. +-...+...+.. +.+.|.+||+|...++ ++-| |..-.++|-++. .-.-|.
T Consensus 37 ~~lv~ElvdNsiDea~~-g~~~~I~V~i~~~g~i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lhag~Kfd~~~yk~SgGl 115 (220)
T 4duh_A 37 HHMVFEVVDNAIDEALA-GHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115 (220)
T ss_dssp HHHHHHHHHHHHHHHHH-SCCCEEEEEECTTSCEEEEECSSCCCCSEETTTTEEHHHHHHHSTTCSSCCCTTC-------
T ss_pred HHHHHHHHHHHHHHHhc-CCCCEEEEEEeCCCcEEEEECCcCcccccccccCcchhhheeeecccCCCcCCCccccccCc
Confidence 37889999999998432 224678888875 4689999999998875 5665 567777776542 122589
Q ss_pred cccccceeccccCccE--EecCC--eEEEecC
Q 000132 1275 KGIGFKSVFRVTDAPE--IHSNG--FHVKFDT 1302 (2109)
Q Consensus 1275 KGIGFKSVF~VTD~P~--I~SGG--YsFkFD~ 1302 (2109)
-|.|=++|=.++..-. |+.+| |...|.+
T Consensus 116 hGvG~svvNAlS~~l~v~v~r~g~~~~~~f~~ 147 (220)
T 4duh_A 116 HGVGVSVVNALSQKLELVIQREGKIHRQIYEH 147 (220)
T ss_dssp -CCCHHHHHHTEEEEEEEEEETTEEEEEEEET
T ss_pred cceecchhcccccceEEEEEECCEEEEEEecC
Confidence 9999999999987544 55566 4455653
No 34
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=61.30 E-value=3.4 Score=45.16 Aligned_cols=78 Identities=17% Similarity=0.253 Sum_probs=47.6
Q ss_pred chhhcccccccCCCCCCCCCcEEEEE--eCCe--EEEEeCCCCCCHhhHHHHHhccCccccCCCCCcccccccccceecc
Q 000132 1209 FLLELVQNADDNIYPENVEPTLTFIL--QESG--IVVLNNEQGFSAENIRALCDVGNSTKKGSSAGYIGRKGIGFKSVFR 1284 (2109)
Q Consensus 1209 FL~ELIQNADDN~Y~e~v~PtLsF~L--~dd~--LlV~NNE~GFTeeDIeAICsIG~STKkg~~~gyIGeKGIGFKSVF~ 1284 (2109)
.+..||.||=+..........+.+.+ .++. +.|.+||.|+++++.+.|-+-..+++.... ...+..|+|---|-.
T Consensus 142 il~NLl~NAik~~~~~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~-~~~~G~GLGL~i~~~ 220 (258)
T 2c2a_A 142 VLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLT-YEVPGTGLGLAITKE 220 (258)
T ss_dssp HHHHHHHHHHHTCCTTCTTCEEEEEEEEETTEEEEEEEECSSCCCGGGTTGGGSTTCCCC----------CCCTHHHHHH
T ss_pred HHHHHHHHHHhcCcCCCCceeEEEEEecCCCeEEEEEEecCCCCCHHHHHhhccccccCCCCCC-CCCCCcchHHHHHHH
Confidence 34467788876543322234455554 3444 568899999999999999888777665432 223457888877766
Q ss_pred ccC
Q 000132 1285 VTD 1287 (2109)
Q Consensus 1285 VTD 1287 (2109)
+..
T Consensus 221 iv~ 223 (258)
T 2c2a_A 221 IVE 223 (258)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 35
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=61.14 E-value=1.4 Score=46.10 Aligned_cols=76 Identities=29% Similarity=0.333 Sum_probs=49.6
Q ss_pred hhhcccccccCCCCC---------CCCCcEEEEE--eCCe--EEEEeCCCCCCHhhH-----------------------
Q 000132 1210 LLELVQNADDNIYPE---------NVEPTLTFIL--QESG--IVVLNNEQGFSAENI----------------------- 1253 (2109)
Q Consensus 1210 L~ELIQNADDN~Y~e---------~v~PtLsF~L--~dd~--LlV~NNE~GFTeeDI----------------------- 1253 (2109)
+.+||.||=...... ...+.+.+.+ .++. |.|.+||.|++++++
T Consensus 52 l~nLl~NAik~~~~~~~~~~~~~~~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (189)
T 1i58_A 52 LLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEI 131 (189)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHTSCSSEEEEEEEEEETTEEEEEEEECSSCCCHHHHHHHHHHTTSSCHHHHTTCCHHHH
T ss_pred HHHHHHHHHHhhhccccccccccCCCCCeEEEEEEecCCEEEEEEEeCCCCcCHHHHhhhhhhccchhhhhhcccchhhh
Confidence 678888888765432 2235566655 3444 678899999999987
Q ss_pred -HHHHhccCccccCCCCCcccccccccceeccccC
Q 000132 1254 -RALCDVGNSTKKGSSAGYIGRKGIGFKSVFRVTD 1287 (2109)
Q Consensus 1254 -eAICsIG~STKkg~~~gyIGeKGIGFKSVF~VTD 1287 (2109)
+.|-.-+-++|... ...+..|+|-.-|-.+..
T Consensus 132 ~~~if~~~~~~~~~~--~~~~g~GlGL~iv~~~~~ 164 (189)
T 1i58_A 132 LNFLFVPGFSTKEKV--SEVSGRGVGMDVVKNVVE 164 (189)
T ss_dssp HGGGGSTTCSHHHHH--HGGGTCCCHHHHHHHHHH
T ss_pred HHHhcCCcccccccC--CCCCCCccCHHHHHHHHH
Confidence 44555555555432 123457899888877665
No 36
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=57.32 E-value=4.3 Score=43.31 Aligned_cols=70 Identities=23% Similarity=0.351 Sum_probs=49.0
Q ss_pred chhhcccccccCCCCCCCCCcEEE--EEeCCe--EEEEeCCCCCCHhhHHHHHhccCccccCCCCCcccccccccceecc
Q 000132 1209 FLLELVQNADDNIYPENVEPTLTF--ILQESG--IVVLNNEQGFSAENIRALCDVGNSTKKGSSAGYIGRKGIGFKSVFR 1284 (2109)
Q Consensus 1209 FL~ELIQNADDN~Y~e~v~PtLsF--~L~dd~--LlV~NNE~GFTeeDIeAICsIG~STKkg~~~gyIGeKGIGFKSVF~ 1284 (2109)
.+.+||.||=...-. .+.+.+ ...++. |.|.+||.|+++++.+.|-.-..++|.. +..|+|..-|-.
T Consensus 127 il~nLl~NA~~~~~~---~~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~if~~~~~~~~~------~g~GlGL~i~~~ 197 (244)
T 3d36_A 127 CLLNVMKNAIEAMPN---GGTLQVYVSIDNGRVLIRIADTGVGMTKEQLERLGEPYFTTKGV------KGTGLGMMVVYR 197 (244)
T ss_dssp HHHHHHHHHHHTCTT---CEEEEEEEEEETTEEEEEEEECSSCCCHHHHHHTTSTTCCSSGG------GCCSCHHHHHHH
T ss_pred HHHHHHHHHHHhccC---CCeEEEEEEEeCCEEEEEEEecCCCCCHHHHHHHhcccccCCCC------CCcchhHHHHHH
Confidence 445777888765422 133444 445555 5688999999999999998888777632 346999988877
Q ss_pred ccC
Q 000132 1285 VTD 1287 (2109)
Q Consensus 1285 VTD 1287 (2109)
+..
T Consensus 198 i~~ 200 (244)
T 3d36_A 198 IIE 200 (244)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 37
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=55.33 E-value=15 Score=44.36 Aligned_cols=88 Identities=9% Similarity=0.058 Sum_probs=60.8
Q ss_pred cchhhcccccccCCCCCCCCCcEEEEEeC-CeEEEEeCCCCCCHhhHHHHHhccCccccCC----CCCccccccccccee
Q 000132 1208 HFLLELVQNADDNIYPENVEPTLTFILQE-SGIVVLNNEQGFSAENIRALCDVGNSTKKGS----SAGYIGRKGIGFKSV 1282 (2109)
Q Consensus 1208 HFL~ELIQNADDN~Y~e~v~PtLsF~L~d-d~LlV~NNE~GFTeeDIeAICsIG~STKkg~----~~gyIGeKGIGFKSV 1282 (2109)
|.|+|||-||=|+.-. +-...+...+.+ +.|.|.+||+|-.. +.|.....++|-++ ..-.+- | |=+||
T Consensus 33 ~~v~ElvdNsiDe~~~-g~a~~I~V~i~~~g~I~V~DnGrGIp~---e~v~~lhagsKf~~~~~~~~y~vs--G-Gls~v 105 (369)
T 3cwv_A 33 HLVYFLLDVAYEEARR-GECRDVVLEVGGDGSIALFCTSRTVTA---ENLVRVATGAGFLGRPPGDGWGWD--S-MLVVS 105 (369)
T ss_dssp HHHHHHHHHHHHHHHT-TCCSEEEEEECTTSCEEEEEEESSCCH---HHHHHHHTTTTGGGSSCCCSTTTT--S-SHHHH
T ss_pred HHHHHHHhhhHhHHhh-CCCCEEEEEEeCCCEEEEEECCCCcCH---hHeeeeecCCCcCCCccccccccc--C-HHHHH
Confidence 7899999999997422 234689999974 46889999999998 55566666777654 111122 5 88888
Q ss_pred ccccCccEEec--C--CeEEEecC
Q 000132 1283 FRVTDAPEIHS--N--GFHVKFDT 1302 (2109)
Q Consensus 1283 F~VTD~P~I~S--G--GYsFkFD~ 1302 (2109)
=.++....|.+ + +|...|..
T Consensus 106 nalSs~l~v~t~r~g~~~~~~~~~ 129 (369)
T 3cwv_A 106 LALSSRYQVDIWADGRQWRVMGEH 129 (369)
T ss_dssp HHTEEEEEEEEEETTEEEEEEEET
T ss_pred HHhhceEEEEEEECCCEEEEEEeC
Confidence 88876665533 3 36666754
No 38
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=54.52 E-value=3.2 Score=50.60 Aligned_cols=95 Identities=17% Similarity=0.165 Sum_probs=67.9
Q ss_pred cchhhcccccccCCCCCCCCCcEEEEEeC--CeEEEEeCCCCCCHhh--------HHH-HHhccCccccCCC--CCcccc
Q 000132 1208 HFLLELVQNADDNIYPENVEPTLTFILQE--SGIVVLNNEQGFSAEN--------IRA-LCDVGNSTKKGSS--AGYIGR 1274 (2109)
Q Consensus 1208 HFL~ELIQNADDN~Y~e~v~PtLsF~L~d--d~LlV~NNE~GFTeeD--------IeA-ICsIG~STKkg~~--~gyIGe 1274 (2109)
|.|+|||-||=|+.-..+-...+...+.. +.|.|.+||+|-..++ ++- ++....++|-++. .-.-|.
T Consensus 55 ~lv~EivdNsiDe~~~~g~~~~I~V~i~~~~~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsKf~~~~ykvSgGl 134 (400)
T 1zxm_A 55 KIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDDEKKVTGGR 134 (400)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEEEEETTTTEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCCCGGGCCCCSCC
T ss_pred HHHHHHHhhHHhHHhhcCCCceEEEEEECCCCEEEEEECCCcccCccccccCccchhheeeeecccCCCCCCcccccCCc
Confidence 78999999999985222334678988886 5789999999998876 554 4446667775431 012488
Q ss_pred cccccceeccccCccEEec----C--CeEEEecC
Q 000132 1275 KGIGFKSVFRVTDAPEIHS----N--GFHVKFDT 1302 (2109)
Q Consensus 1275 KGIGFKSVF~VTD~P~I~S----G--GYsFkFD~ 1302 (2109)
-|+|=++|=.++....|.+ . .|...|.+
T Consensus 135 hGvGlsvVnAlS~~l~v~v~~~~~g~~~~~~~~~ 168 (400)
T 1zxm_A 135 NGYGAKLCNIFSTKFTVETASREYKKMFKQTWMD 168 (400)
T ss_dssp SSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEET
T ss_pred cccceeeeEEeccceEEEEecCCCCcEEEEEEcc
Confidence 9999999999887776643 1 36666654
No 39
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=54.15 E-value=3.2 Score=41.25 Aligned_cols=68 Identities=19% Similarity=0.213 Sum_probs=45.4
Q ss_pred hhhcccccccCCCCCCCCCcEEEEEe--CCe--EEEEeCCCCCCHhhHHHHHhccCccccCCCCCcccccccccceeccc
Q 000132 1210 LLELVQNADDNIYPENVEPTLTFILQ--ESG--IVVLNNEQGFSAENIRALCDVGNSTKKGSSAGYIGRKGIGFKSVFRV 1285 (2109)
Q Consensus 1210 L~ELIQNADDN~Y~e~v~PtLsF~L~--dd~--LlV~NNE~GFTeeDIeAICsIG~STKkg~~~gyIGeKGIGFKSVF~V 1285 (2109)
+.+||.||=..... .+.+.+.+. ++. +.|.+|+.|+++++++.|-+-..++|. +..|+|..-|-.+
T Consensus 52 l~nll~NAi~~~~~---~~~I~i~~~~~~~~~~i~i~D~G~g~~~~~~~~~f~~~~~~~~-------~g~GlGL~i~~~~ 121 (152)
T 3a0y_A 52 LINLVQNAIEATGE---NGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFTTKT-------QGTGLGLSICRKI 121 (152)
T ss_dssp HHHHHHHHHHHHCT---TCEEEEEEEECSSEEEEEEEEESCCCCGGGTTGGGSTTCCCC---------CCCCSHHHHHHH
T ss_pred HHHHHHHHHHhcCC---CCEEEEEEEecCCEEEEEEEeCCCCcCHHHHHhHhhhhccCCC-------CCCCcCHHHHHHH
Confidence 34666776554321 245555554 333 678899999999999988877766653 2369999888776
Q ss_pred cC
Q 000132 1286 TD 1287 (2109)
Q Consensus 1286 TD 1287 (2109)
..
T Consensus 122 ~~ 123 (152)
T 3a0y_A 122 IE 123 (152)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 40
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=48.03 E-value=11 Score=36.74 Aligned_cols=55 Identities=25% Similarity=0.309 Sum_probs=37.3
Q ss_pred cchhhcccccccCCCCCCCCCcEEEEEeCC---eEEEEeCCCCCCHhhHHHHHhccCccccCCCCCcccccccccceecc
Q 000132 1208 HFLLELVQNADDNIYPENVEPTLTFILQES---GIVVLNNEQGFSAENIRALCDVGNSTKKGSSAGYIGRKGIGFKSVFR 1284 (2109)
Q Consensus 1208 HFL~ELIQNADDN~Y~e~v~PtLsF~L~dd---~LlV~NNE~GFTeeDIeAICsIG~STKkg~~~gyIGeKGIGFKSVF~ 1284 (2109)
+.+.|||.||=... . .+.+.+.+..+ .+.|.+||.||+++. .|+|-.-|-.
T Consensus 46 ~il~nll~NA~k~~--~--~~~i~i~~~~~~~~~i~v~D~G~gi~~~~----------------------~GlGL~i~~~ 99 (129)
T 3zxo_A 46 AVVREAVSNAVRHA--A--ASTLTVRVKVDDDLCIEVTDNGRGMPDEF----------------------TGSGLTNLRQ 99 (129)
T ss_dssp HHHHHHHHHCCCCS--S--CCEEEEEEEESSEEEEEEEECCCCCTTTT----------------------CSHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--C--CceEEEEEEEcCCEEEEEecCCCCCCccc----------------------CCcCHHHHHH
Confidence 45678888887754 1 24566665433 366889999998776 4788777776
Q ss_pred ccCc
Q 000132 1285 VTDA 1288 (2109)
Q Consensus 1285 VTD~ 1288 (2109)
+...
T Consensus 100 ~~~~ 103 (129)
T 3zxo_A 100 RAEQ 103 (129)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 41
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=47.79 E-value=5.8 Score=47.04 Aligned_cols=78 Identities=18% Similarity=0.137 Sum_probs=50.5
Q ss_pred hhhcccccccCCCCC----CCCCcEEEEEeCC--e--EEEEeCCCCCCHhhHHHHHhccCccccCC-----CCCcccccc
Q 000132 1210 LLELVQNADDNIYPE----NVEPTLTFILQES--G--IVVLNNEQGFSAENIRALCDVGNSTKKGS-----SAGYIGRKG 1276 (2109)
Q Consensus 1210 L~ELIQNADDN~Y~e----~v~PtLsF~L~dd--~--LlV~NNE~GFTeeDIeAICsIG~STKkg~-----~~gyIGeKG 1276 (2109)
+.+||.||=.+.... ...|.+.+.+..+ . |.|.+||.|+++++++.|-+-.-+++... .....|..|
T Consensus 235 l~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~~~~~~~~G~G 314 (394)
T 2e0a_A 235 LFELFKNAMRATVEHQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGFG 314 (394)
T ss_dssp HHHHHHHHHHHHHHHTTTSSSCCCEEEEEEECSSEEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC------CCCSSCSS
T ss_pred HHHHHHHHHHHHHhcccccCCCCCEEEEEEeCCCEEEEEEEeCCCCcCHHHHHHHhCcCccCCCCCCcCcCCCCCCCCcc
Confidence 345566664432111 1246777777543 2 67899999999999999999888887641 112345678
Q ss_pred cccceeccccC
Q 000132 1277 IGFKSVFRVTD 1287 (2109)
Q Consensus 1277 IGFKSVF~VTD 1287 (2109)
+|---|-.++.
T Consensus 315 LGL~i~~~i~~ 325 (394)
T 2e0a_A 315 YGLPISRLYAK 325 (394)
T ss_dssp CHHHHHHHHHH
T ss_pred cCHHHHHHHHH
Confidence 88776666554
No 42
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=46.47 E-value=6.1 Score=46.81 Aligned_cols=77 Identities=18% Similarity=0.178 Sum_probs=46.9
Q ss_pred hhhcccccccCCCCC----CCCCcEEEEEeCC--e--EEEEeCCCCCCHhhHHHHHhccCccccC-----CCCCcccccc
Q 000132 1210 LLELVQNADDNIYPE----NVEPTLTFILQES--G--IVVLNNEQGFSAENIRALCDVGNSTKKG-----SSAGYIGRKG 1276 (2109)
Q Consensus 1210 L~ELIQNADDN~Y~e----~v~PtLsF~L~dd--~--LlV~NNE~GFTeeDIeAICsIG~STKkg-----~~~gyIGeKG 1276 (2109)
+.+||.||=...... ...|.+.+.+..+ . |.|.+||.|+++++++.|-+-.-+++.. .. ...|..|
T Consensus 236 l~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~-~~~~G~G 314 (394)
T 2btz_A 236 LFELFKNAMRATVESHESSLILPPIKVMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGG-TPLAGFG 314 (394)
T ss_dssp HHHHHHHHHHHHHHTTTTCSCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHHHHTCTTTTCCC---------------C
T ss_pred HHHHHHHHHHHhhhccccCCCCCCEEEEEEeCCCEEEEEEEeCCCCCCHHHHHHHhcccccCCCCCCcccCC-CCCCCcc
Confidence 445666664432211 1236677777543 3 6788999999999999999888877764 21 2345678
Q ss_pred cccceeccccC
Q 000132 1277 IGFKSVFRVTD 1287 (2109)
Q Consensus 1277 IGFKSVF~VTD 1287 (2109)
+|--=|-.++.
T Consensus 315 LGL~i~~~i~~ 325 (394)
T 2btz_A 315 YGLPISRLYAK 325 (394)
T ss_dssp CHHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 88776666654
No 43
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=43.77 E-value=6.2 Score=47.02 Aligned_cols=61 Identities=15% Similarity=0.114 Sum_probs=43.2
Q ss_pred CCcEEEEEeCC--e--EEEEeCCCCCCHhhHHHHHhccCccccCC-----CCCcccccccccceeccccC
Q 000132 1227 EPTLTFILQES--G--IVVLNNEQGFSAENIRALCDVGNSTKKGS-----SAGYIGRKGIGFKSVFRVTD 1287 (2109)
Q Consensus 1227 ~PtLsF~L~dd--~--LlV~NNE~GFTeeDIeAICsIG~STKkg~-----~~gyIGeKGIGFKSVF~VTD 1287 (2109)
.|.+.+.+..+ . |.|.+||.|+++++++.|-+-.-+++... .....|..|+|--=|-.++.
T Consensus 269 ~~~I~I~~~~~~~~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~~~~~~~~G~GLGL~Ivr~i~~ 338 (407)
T 2q8g_A 269 YPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAVPLAGFGYGLPISRLYAQ 338 (407)
T ss_dssp CCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSCCSCCCSSCTTCHHHHHHHHHH
T ss_pred CCCEEEEEEeCCCEEEEEEEecCCCCCHHHHHHHhCccccCCCCCCccccCCCCCCCcCCCHHHHHHHHH
Confidence 46777777543 3 67899999999999999998888777641 11234567788766655543
No 44
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=43.73 E-value=9.8 Score=41.45 Aligned_cols=70 Identities=20% Similarity=0.209 Sum_probs=49.0
Q ss_pred cchhhcccccccCCCCCCCCCcEEEEEe--CCe--EEEEeCCCCCCHhhHHHHHhccCccccCCCCCcccccccccceec
Q 000132 1208 HFLLELVQNADDNIYPENVEPTLTFILQ--ESG--IVVLNNEQGFSAENIRALCDVGNSTKKGSSAGYIGRKGIGFKSVF 1283 (2109)
Q Consensus 1208 HFL~ELIQNADDN~Y~e~v~PtLsF~L~--dd~--LlV~NNE~GFTeeDIeAICsIG~STKkg~~~gyIGeKGIGFKSVF 1283 (2109)
+.+.+||.||=+..... +.+.+.+. ++. |.|.+||.||+++..+.|..-..++|. +..|+|..-|-
T Consensus 158 ~il~nLl~NA~~~~~~~---~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~-------~g~GlGL~i~~ 227 (268)
T 4ew8_A 158 QTLDHLVENALRQTPPG---GRVTLSARRALGEVRLDVSDTGRGVPFHVQAHIFDRFVGRDR-------GGPGLGLALVK 227 (268)
T ss_dssp HHHHHHHHHHHHHSCTT---CEEEEEEEECSSEEEEEEEESSCCCCHHHHTTTTSTTCCCSS-------CCCTTHHHHHH
T ss_pred HHHHHHHHHHHHhCCCC---CEEEEEEEecCCEEEEEEEcCCCCCCHHHHHHHHHHHhcCCC-------CCCcccHHHHH
Confidence 35667788887754321 45555553 443 678899999999999999888776664 23689987777
Q ss_pred cccC
Q 000132 1284 RVTD 1287 (2109)
Q Consensus 1284 ~VTD 1287 (2109)
.+..
T Consensus 228 ~~~~ 231 (268)
T 4ew8_A 228 ALVE 231 (268)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7664
No 45
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=39.33 E-value=9.2 Score=46.86 Aligned_cols=95 Identities=17% Similarity=0.280 Sum_probs=57.4
Q ss_pred CcchhhcccccccCCCCCCCCCcEEEEEeC-CeEEEEeCCCCCCHhh--------HHHH-HhccCccccCCC--CCcccc
Q 000132 1207 SHFLLELVQNADDNIYPENVEPTLTFILQE-SGIVVLNNEQGFSAEN--------IRAL-CDVGNSTKKGSS--AGYIGR 1274 (2109)
Q Consensus 1207 tHFL~ELIQNADDN~Y~e~v~PtLsF~L~d-d~LlV~NNE~GFTeeD--------IeAI-CsIG~STKkg~~--~gyIGe 1274 (2109)
.|.++|+|-||=|+.-. +-...+...+.. +.|.|.+||+|.-.+. ++-| |.+-.++|-++. .-.-|.
T Consensus 52 ~hlv~EivdNsiDea~a-g~~~~I~V~i~~dgsI~V~DnGrGIPv~~h~~~~~~~~e~i~t~lhaggKfd~~~ykvSgGl 130 (408)
T 3lnu_A 52 NHLAQEVIDNSVDEALA-GHAKQIEVTLYKDGSCEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKFNNRNYTFSGGL 130 (408)
T ss_dssp HHHHHHHHHHHHHHHHT-TSCCEEEEEECTTSCEEEEECSSCCCCSBCTTTCSBHHHHHHHCC-----------------
T ss_pred chhhHHHHHHHHHHhhc-CCCceEEEEEeCCCeEEEEEcCCCCCcccccccCCcchheEEEecccCCCcCCCceeecCCc
Confidence 57999999999998432 224678888874 5689999999998765 5665 577777776542 112488
Q ss_pred cccccceeccccCccE--EecCC--eEEEecC
Q 000132 1275 KGIGFKSVFRVTDAPE--IHSNG--FHVKFDT 1302 (2109)
Q Consensus 1275 KGIGFKSVF~VTD~P~--I~SGG--YsFkFD~ 1302 (2109)
-|+|=++|=.++..-. |..+| |...|.+
T Consensus 131 hGvG~svVNALS~~l~v~v~rdGk~~~q~f~~ 162 (408)
T 3lnu_A 131 HGVGVSVVNALSTKVELFIKREGSEHRMEFRD 162 (408)
T ss_dssp ---CHHHHHHTEEEEEEEEEETTEEEEEEEET
T ss_pred cccccceehhccCeEEEEEEECCEEEEEEECC
Confidence 9999999999987554 55666 4555654
No 46
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=38.34 E-value=12 Score=42.03 Aligned_cols=69 Identities=19% Similarity=0.198 Sum_probs=46.0
Q ss_pred chhhcccccccCCCCCCCCCcEEEEE--eCCe--EEEEeCCCCCCHhhHHHHHhccCccccCCCCCcccccccccceecc
Q 000132 1209 FLLELVQNADDNIYPENVEPTLTFIL--QESG--IVVLNNEQGFSAENIRALCDVGNSTKKGSSAGYIGRKGIGFKSVFR 1284 (2109)
Q Consensus 1209 FL~ELIQNADDN~Y~e~v~PtLsF~L--~dd~--LlV~NNE~GFTeeDIeAICsIG~STKkg~~~gyIGeKGIGFKSVF~ 1284 (2109)
.+.+||.||=...-. .+.+.+.+ .++. |.|.+||.|+++++.+.|-+-..++|. +..|+|-.-|-.
T Consensus 248 vl~nLl~NA~k~~~~---~~~i~i~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~f~~~~~-------~g~GlGL~i~~~ 317 (349)
T 3a0r_A 248 VLINLVQNAIEATGE---NGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFTTKT-------QGTGLGLSICRK 317 (349)
T ss_dssp HHHHHHTHHHHTTCT---TCCEEEEEEEETTEEEEEEEEESCCCCGGGGTTTSSSCCCC-------------CCCTHHHH
T ss_pred HHHHHHHHHHHhccC---CCEEEEEEEecCCEEEEEEEECCCCCChHHHhhcCCCCccCCC-------CCccchHHHHHH
Confidence 456888888776522 24455544 4454 567899999999999999888887773 236899887776
Q ss_pred ccC
Q 000132 1285 VTD 1287 (2109)
Q Consensus 1285 VTD 1287 (2109)
+..
T Consensus 318 ~v~ 320 (349)
T 3a0r_A 318 IIE 320 (349)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 47
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=37.73 E-value=11 Score=44.86 Aligned_cols=76 Identities=29% Similarity=0.333 Sum_probs=46.2
Q ss_pred hhhcccccccCCCCC---------CCCCcEEEEE--eCCe--EEEEeCCCCCCHhhH-----------------------
Q 000132 1210 LLELVQNADDNIYPE---------NVEPTLTFIL--QESG--IVVLNNEQGFSAENI----------------------- 1253 (2109)
Q Consensus 1210 L~ELIQNADDN~Y~e---------~v~PtLsF~L--~dd~--LlV~NNE~GFTeeDI----------------------- 1253 (2109)
+.+||.||=|..... ...+++.+.+ .++. |.|.+||.|++++.+
T Consensus 111 l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~~~~~~v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~~~~~~~~~~~ 190 (379)
T 1b3q_A 111 LLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEI 190 (379)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEEETTEEEEEEEECSCCCCHHHHHHHHHHSSSCCSTTTTTSCTHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEEEeCCEEEEEEEECCCCCCHHHHHHHHHHcCCCChhhhhcCCHHHH
Confidence 678888988865321 2235566555 3454 568899999999998
Q ss_pred -HHHHhccCccccCCCCCcccccccccceeccccC
Q 000132 1254 -RALCDVGNSTKKGSSAGYIGRKGIGFKSVFRVTD 1287 (2109)
Q Consensus 1254 -eAICsIG~STKkg~~~gyIGeKGIGFKSVF~VTD 1287 (2109)
+-|..-|-|||... ..++..|+|---|-.+..
T Consensus 191 ~~~iF~p~fst~~~~--~~~~G~GlGL~iv~~~v~ 223 (379)
T 1b3q_A 191 LNFLFVPGFSTKEKV--SEVSGRGVGMDVVKNVVE 223 (379)
T ss_dssp HSGGGSTTCC-------------CCCSHHHHHHHH
T ss_pred HHHhcCCCCccCCcc--CCCCCccccHHHHHHHHH
Confidence 55888888888653 235667899877766544
No 48
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=36.58 E-value=6.2 Score=46.57 Aligned_cols=58 Identities=17% Similarity=0.267 Sum_probs=40.0
Q ss_pred chhhcccccccCCCCC-----CCCCcEEEEEeCCe----EEEEeCCCCCCHhhHHHHHhccCccccC
Q 000132 1209 FLLELVQNADDNIYPE-----NVEPTLTFILQESG----IVVLNNEQGFSAENIRALCDVGNSTKKG 1266 (2109)
Q Consensus 1209 FL~ELIQNADDN~Y~e-----~v~PtLsF~L~dd~----LlV~NNE~GFTeeDIeAICsIG~STKkg 1266 (2109)
.+.+||.||=.+.... ...|.+.+.+..+. |.|.+||.|+++++++.|-+-.-++|..
T Consensus 242 il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~ 308 (388)
T 1gkz_A 242 ILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEA 308 (388)
T ss_dssp HHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEECSSEEEEEEECCSCCCCTTTTTTTTSTTCCCC--
T ss_pred HHHHHHHHHHHHhhccccCCCCCCCCEEEEEEeCCCEEEEEEEEeCCCcCHHHHHHhcCcccccCCC
Confidence 5567777776543221 12357777775433 7789999999999999998888777764
No 49
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=33.59 E-value=4.5 Score=40.37 Aligned_cols=42 Identities=24% Similarity=0.270 Sum_probs=18.2
Q ss_pred EEEEeCCCCCCHhhHHHHHhccCccccCCCCCcccccccccceeccccC
Q 000132 1239 IVVLNNEQGFSAENIRALCDVGNSTKKGSSAGYIGRKGIGFKSVFRVTD 1287 (2109)
Q Consensus 1239 LlV~NNE~GFTeeDIeAICsIG~STKkg~~~gyIGeKGIGFKSVF~VTD 1287 (2109)
+.|.+||.|+++++.+.|-+-..++|. +..|+|..-|-.+..
T Consensus 94 i~v~D~G~gi~~~~~~~lf~~~~~~~~-------~g~GlGL~i~~~~~~ 135 (160)
T 1r62_A 94 IDVEDNGPGIPPHLQDTLFYPMVSGRE-------GGTGLGLSIARNLID 135 (160)
T ss_dssp EEEEEECTTC---------------------------CHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHhhCccccCCC-------CCCccCHHHHHHHHH
Confidence 668899999999999999877776663 237899888777654
No 50
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=29.24 E-value=9.1 Score=45.95 Aligned_cols=60 Identities=15% Similarity=0.127 Sum_probs=38.2
Q ss_pred CCcEEEEEeC--Ce--EEEEeCCCCCCHhhHHHHHhccCccccC------CCCCcccccccccceeccccC
Q 000132 1227 EPTLTFILQE--SG--IVVLNNEQGFSAENIRALCDVGNSTKKG------SSAGYIGRKGIGFKSVFRVTD 1287 (2109)
Q Consensus 1227 ~PtLsF~L~d--d~--LlV~NNE~GFTeeDIeAICsIG~STKkg------~~~gyIGeKGIGFKSVF~VTD 1287 (2109)
.|.+.+.+.. +. |.|.+||.|+++++++.|-+-.-+++.. .. ...+-.|+|--=|-.+++
T Consensus 280 ~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~~~~~-~~~~G~GLGL~I~k~iv~ 349 (419)
T 1y8o_A 280 YPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRA-APLAGFGYGLPISRLYAR 349 (419)
T ss_dssp CCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCTTTC--------------CC--CTTHHHHHHHHHH
T ss_pred CCCEEEEEEeCCCEEEEEEEECCCCCCHHHHHHHhCcccccCCCCCccccCC-CCcCCeecCHHHHHHHHH
Confidence 3567777653 33 6788999999999999999888877764 11 224557888766665554
No 51
>2k4f_A T-cell surface glycoprotein CD3 epsilon chain; ITAM, TCR, membrane bound protein, bicelle, immunoglobulin domain, membrane, phosphoprotein; NMR {Mus musculus}
Probab=25.91 E-value=41 Score=30.82 Aligned_cols=26 Identities=35% Similarity=0.701 Sum_probs=16.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000132 13 GGVGGEGTGGGQPPSQPPPPHFNPNFA 39 (2109)
Q Consensus 13 ~~~~~~~~~gg~~p~~~p~~~~~~~~~ 39 (2109)
+|.|.+|+++||--..|| +-+||.|-
T Consensus 14 rg~~ag~RprgqnkerpP-PVPNPDYE 39 (57)
T 2k4f_A 14 RGTGAGSRPRGQNKERPP-PVPNPDYE 39 (57)
T ss_dssp GTCCCSSCCCCCCCCCCC-CCCSGGGC
T ss_pred cccCcCCCcccccccCCC-CCCCCCcc
Confidence 445566788887666655 56677763
No 52
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=23.93 E-value=19 Score=44.17 Aligned_cols=94 Identities=19% Similarity=0.200 Sum_probs=65.9
Q ss_pred cchhhcccccccCCCCCCCCCcEEEEEeCC--eEEEEeCCCCCCHhh--------HHH-HHhccCccccCCCCCc---cc
Q 000132 1208 HFLLELVQNADDNIYPENVEPTLTFILQES--GIVVLNNEQGFSAEN--------IRA-LCDVGNSTKKGSSAGY---IG 1273 (2109)
Q Consensus 1208 HFL~ELIQNADDN~Y~e~v~PtLsF~L~dd--~LlV~NNE~GFTeeD--------IeA-ICsIG~STKkg~~~gy---IG 1273 (2109)
|.+.|+|-||=|+.-..+-.+.+...+..+ .+.|.+||+|--.+. +|- .|.+..+.|=++. .| -|
T Consensus 67 ~lv~EivdNaiDe~~~~g~~~~I~V~i~~d~~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKfd~~-~ykvSGG 145 (418)
T 1pvg_A 67 KIFDEILVNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDD-EKKVTGG 145 (418)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEEEEETTTTEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCTT-SCCCCSC
T ss_pred HHHHHHHhCHHHHHHhcCCCCEEEEEEECCCCEEEEEECCCcccCcccccCCcccceEEEEEEecccccCCC-ceeccCC
Confidence 689999999999753223457899999865 699999999986554 333 4666677776542 12 38
Q ss_pred ccccccceeccccCccE--Ee--cCC--eEEEecC
Q 000132 1274 RKGIGFKSVFRVTDAPE--IH--SNG--FHVKFDT 1302 (2109)
Q Consensus 1274 eKGIGFKSVF~VTD~P~--I~--SGG--YsFkFD~ 1302 (2109)
.-|+|=+.|=..+..-. |. .+| |.-.|.+
T Consensus 146 LhGVG~SvVNALS~~l~V~v~r~rdGk~y~q~f~~ 180 (418)
T 1pvg_A 146 RNGYGAKLCNIFSTEFILETADLNVGQKYVQKWEN 180 (418)
T ss_dssp CSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEET
T ss_pred ccceeeeeeeeccceEEEEEEECCCCcEEEEEEEc
Confidence 89999998877777655 45 355 5556754
No 53
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=22.69 E-value=26 Score=36.94 Aligned_cols=56 Identities=21% Similarity=0.095 Sum_probs=31.8
Q ss_pred chhhcccccccCCCCCCCCCcEEEEE--eCCe--EEEEeCCCCCCHhhHHHHHhccCccccCCCCCcccccccccceecc
Q 000132 1209 FLLELVQNADDNIYPENVEPTLTFIL--QESG--IVVLNNEQGFSAENIRALCDVGNSTKKGSSAGYIGRKGIGFKSVFR 1284 (2109)
Q Consensus 1209 FL~ELIQNADDN~Y~e~v~PtLsF~L--~dd~--LlV~NNE~GFTeeDIeAICsIG~STKkg~~~gyIGeKGIGFKSVF~ 1284 (2109)
.+.|||.||-... .+ +.+.+.+ .++. |.|.+||.||++++. +..|+|-..|..
T Consensus 134 il~nll~Na~k~~--~~--~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~-------------------~g~GlGL~~~~~ 190 (218)
T 3ehh_A 134 CLKEAVTNVVKHS--QA--KTCRVDIQQLWKEVVITVSDDGTFKGEENS-------------------FSKGHGLLGMRE 190 (218)
T ss_dssp HHHHHHHHHHHHT--CC--SEEEEEEEEETTEEEEEEEESSCCCC---------------------------CHHHHHHH
T ss_pred HHHHHHHHHHHhC--CC--CEEEEEEEEeCCEEEEEEEECCcCCCCCCC-------------------CCCCCCHHHHHH
Confidence 5667788876543 21 3444444 5554 568899999999876 235788777776
Q ss_pred ccC
Q 000132 1285 VTD 1287 (2109)
Q Consensus 1285 VTD 1287 (2109)
+..
T Consensus 191 ~v~ 193 (218)
T 3ehh_A 191 RLE 193 (218)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 54
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=21.68 E-value=23 Score=34.97 Aligned_cols=57 Identities=21% Similarity=0.086 Sum_probs=36.1
Q ss_pred cchhhcccccccCCCCCCCCCcEEEEE--eCCe--EEEEeCCCCCCHhhHHHHHhccCccccCCCCCcccccccccceec
Q 000132 1208 HFLLELVQNADDNIYPENVEPTLTFIL--QESG--IVVLNNEQGFSAENIRALCDVGNSTKKGSSAGYIGRKGIGFKSVF 1283 (2109)
Q Consensus 1208 HFL~ELIQNADDN~Y~e~v~PtLsF~L--~dd~--LlV~NNE~GFTeeDIeAICsIG~STKkg~~~gyIGeKGIGFKSVF 1283 (2109)
+.+.|||.||=... .. ..+.+.+ .++. |.|.+||.||++++. +..|+|-..|-
T Consensus 43 ~il~nll~Na~k~~--~~--~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~-------------------~g~GlGL~~~~ 99 (128)
T 3ehg_A 43 MCLKEAVTNVVKHS--QA--KTCRVDIQQLWKEVVITVSDDGTFKGEENS-------------------FSKGHGLLGMR 99 (128)
T ss_dssp HHHHHHHHHHHHHT--CC--SEEEEEEEEETTEEEEEEEESSCCCSCSSC-------------------CCTTSHHHHHH
T ss_pred HHHHHHHHHHHhcC--CC--cEEEEEEEEeCCEEEEEEEECCcCcCcccC-------------------CCCCccHHHHH
Confidence 45567777776532 11 3444444 4554 568899999988765 23578887776
Q ss_pred cccC
Q 000132 1284 RVTD 1287 (2109)
Q Consensus 1284 ~VTD 1287 (2109)
.+..
T Consensus 100 ~~~~ 103 (128)
T 3ehg_A 100 ERLE 103 (128)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
Done!