BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000133
(2100 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 87/202 (43%), Gaps = 3/202 (1%)
Query: 1185 MVEAGALEALTKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGG 1244
+V+AG +E L K L+ + +EAA L I E + V LV +L
Sbjct: 40 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD 99
Query: 1245 RGARYSAAKALESLFSA-DHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSEN 1303
+ AA+AL ++ S D A V+ LV++L + Q A AL + S
Sbjct: 100 SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS-G 158
Query: 1304 PSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPL 1363
P A+ A V+ V+VL ++L+S S K A L + G T + A VE L
Sbjct: 159 PDEAIK-AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVL 217
Query: 1364 VSLLVTEFSPAQHSVVRALDKL 1385
LL + S Q RAL+ +
Sbjct: 218 QKLLTSTDSEVQKEAQRALENI 239
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 104/255 (40%), Gaps = 53/255 (20%)
Query: 187 IDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRA 246
++ LVKLLT S TQ LA + S ++ A + L+KLL S ++ V+
Sbjct: 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS-TDSEVQK 62
Query: 247 EAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANI 306
EAA AL +++ +A + I + G+ ++ + E +Q+ A ALANI
Sbjct: 63 EAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSE---------VQKEAARALANI 113
Query: 307 SGGLSNVIXXXXXXXXXXXXPAQVADTLG--ALASALMIYDSKAESTKPSDPLIVEQTLV 364
+ G I + D G L L DS+
Sbjct: 114 ASGPDEAIKA-------------IVDAGGVEVLVKLLTSTDSE----------------- 143
Query: 365 NQFKPRLPFLVQERTIEALASLYGNPLLSIK-LENSEAKRLLVGLITMATNEVQEELVRA 423
VQ+ ALA++ P +IK + ++ +LV L+T +EVQ+E RA
Sbjct: 144 ----------VQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARA 193
Query: 424 LLKLCNNEGSLWRAL 438
L + + S +A+
Sbjct: 194 LANIASGPTSAIKAI 208
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 107/239 (44%), Gaps = 17/239 (7%)
Query: 405 LVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGRXXXXXXXXXXXXXXXXXXXCSVA 464
LV L+T +E Q+E R L ++ + S +A+ +
Sbjct: 7 LVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAAR 66
Query: 465 LLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNH-SEDIRACVE 523
L +++ D++ AI AGG+ LV++L S ++ ++++A L N+ + E I+A V+
Sbjct: 67 ALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD 126
Query: 524 SADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTAT--------ISQLTALLTSDLPE 575
A V L+ LL + + ++ AA+ L ++ D A + L LLTS E
Sbjct: 127 -AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSE 185
Query: 576 SKVYVLDALKSMLS--VVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGI 632
+ AL ++ S + I+ G VE + K+L+ST E Q ++ AL I
Sbjct: 186 VQKEAARALANIASGPTSAIKAIVDAG-----GVEVLQKLLTSTDSEVQKEAQRALENI 239
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 108/240 (45%), Gaps = 10/240 (4%)
Query: 17 QLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAAT 76
+L S+ S +KE + R L E+ +A A+ + V VLV LL S V+ +AA
Sbjct: 9 KLLTSTDSETQKEAA-RDLAEIASGPASAIKAI-VDAGGVEVLVKLLTSTDSEVQKEAAR 66
Query: 77 VLGSLCKENELRVK-VXXXXXXXXXXXXXKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKI 135
L ++ + +K + S+ +E Q AA+ + ++ G + K
Sbjct: 67 ALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI---KA 123
Query: 136 FSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLT 195
G V VL + L + + + V AL N+++ + A V AGG+++LVKLLT
Sbjct: 124 IVDAGGVEVLVKLLTS---TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT 180
Query: 196 LGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSL 255
S Q LA + S ++ A + L KLL S ++ V+ EA AL+++
Sbjct: 181 STDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTS-TDSEVQKEAQRALENI 239
Score = 37.4 bits (85), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 85/180 (47%), Gaps = 3/180 (1%)
Query: 376 QERTIEALASLYGNPLLSIK-LENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSL 434
Q+ LA + P +IK + ++ +LV L+T +EVQ+E RAL + +
Sbjct: 19 QKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 78
Query: 435 WRALQGRXXXXXXXXXXXXXXXXXXXCSVALLCLLSNENDDSKWAITAAGGIPPLVQILE 494
+A+ + L +++ D++ AI AGG+ LV++L
Sbjct: 79 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT 138
Query: 495 SGSAKAKEDSASILRNLCNH-SEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHL 553
S ++ ++++A L N+ + E I+A V+ A V L+ LL + + ++ AA+ L ++
Sbjct: 139 STDSEVQKEAARALANIASGPDEAIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANI 197
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 607 VETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVE 666
VE ++K+L+ST E Q ++A ALA I + ++ + + ++KLL + E
Sbjct: 88 VEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKE 147
Query: 667 ASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANL 717
A+R LA I E + A V + LV L S EV ++A ALAN+
Sbjct: 148 AARALANIASGPDEAIK-AIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 197
Score = 30.8 bits (68), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 57/114 (50%), Gaps = 2/114 (1%)
Query: 604 NDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECI 663
ND VE ++K+L+ST ETQ ++A LA I ++ + + ++KLL +
Sbjct: 2 ND-VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEV 60
Query: 664 LVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANL 717
EA+R LA I E + A V + LV L S EV ++A ALAN+
Sbjct: 61 QKEAARALANIASGPDEAIK-AIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 113
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 38.9 bits (89), Expect = 0.033, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 20/131 (15%)
Query: 1981 LVVIIKRGNNM----KQSVGNPSVYCKLTLGNTPP----RQTKIVSTGPNPEWEESFAWS 2032
L+V+++ N+ + +P Y KL L P ++TK + + NPEW E+F +
Sbjct: 174 LIVVVRDAKNLVPMDPNGLSDP--YVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQ 231
Query: 2033 FEIPPKGQKLHIS------CKNKSKMGKSSFGKVTIQIDRV----VMLGAVAGEYTLLPE 2082
+ K ++L + MG SFG +Q V +L GEY +P
Sbjct: 232 LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFKLLSQEEGEYFNVPV 291
Query: 2083 SKSGPSRNLEI 2093
G N E+
Sbjct: 292 PPEGSEGNEEL 302
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 38.1 bits (87), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 82/168 (48%), Gaps = 9/168 (5%)
Query: 571 SDLPE-SKVYVLDALKSMLSVV-SFSDILREGSAANDAV------ETMIKILSSTKEETQ 622
S+LP+ ++ D ++ LS FS IL +G+ AV ++++LSS E+
Sbjct: 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQIL 71
Query: 623 AKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENR 682
++ AL+ I + ++ I L ++++LL +E IL EA L+ I E
Sbjct: 72 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 683 EVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAE 730
+ A + AL LV L SP ++ ++A AL+N+ ++A+ E
Sbjct: 132 Q-AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKE 178
Score = 34.7 bits (78), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 86/178 (48%), Gaps = 28/178 (15%)
Query: 468 LLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCN-HSEDIRACVESAD 526
+LS+ N+ + A+ AG +P LVQ+L S + + +++ L N+ + +E I+A ++ A
Sbjct: 39 ILSDGNEQIQ-AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID-AG 96
Query: 527 AVPAL---------------LWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTS 571
A+PAL LW L N ++ G E + D + L LL+S
Sbjct: 97 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI-------DAGALPALVQLLSS 149
Query: 572 DLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASAL 629
P ++ + +AL ++ ++ S + ++ A+E + ++ S E+ Q ++ AL
Sbjct: 150 --PNEQI-LQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 204
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 37.4 bits (85), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 84/174 (48%), Gaps = 9/174 (5%)
Query: 571 SDLPE-SKVYVLDALKSMLSVV-SFSDILREGSAANDAV------ETMIKILSSTKEETQ 622
S+LP+ ++ D ++ LS FS IL +G+ AV ++++LSS E+
Sbjct: 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQIL 71
Query: 623 AKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENR 682
++ AL+ I + ++ I L ++++LL +E IL EA L+ I E
Sbjct: 72 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 683 EVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPA 736
+ A + AL LV L SP ++ ++A AL+N+ +A+ + LPA
Sbjct: 132 Q-AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPA 184
Score = 33.9 bits (76), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 102/220 (46%), Gaps = 28/220 (12%)
Query: 468 LLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCN-HSEDIRACVESAD 526
+LS+ N+ + A+ AG +P LVQ+L S + + +++ L N+ + +E I+A ++ A
Sbjct: 39 ILSDGNEQIQ-AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID-AG 96
Query: 527 AVPAL---------------LWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTS 571
A+PAL LW L N ++ G E + D + L LL+S
Sbjct: 97 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI-------DAGALPALVQLLSS 149
Query: 572 DLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAG 631
P ++ + +AL ++ ++ S + + A+ ++++LSS E+ ++ AL+
Sbjct: 150 --PNEQI-LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 206
Query: 632 IFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCL 671
I + +++ L + +L +E I EA L
Sbjct: 207 IASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 246
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
Query: 606 AVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILV 665
A+ ++++LSS E+ ++ AL+ I + ++ I L ++++LL +E IL
Sbjct: 97 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 156
Query: 666 EASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSE 725
EA L+ I E + A + AL LV L SP ++ ++A AL+N+ +
Sbjct: 157 EALWALSNIASGGNEQIQ-AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK 215
Query: 726 KAIAE 730
+A+ E
Sbjct: 216 QAVKE 220
Score = 30.8 bits (68), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 75/170 (44%), Gaps = 6/170 (3%)
Query: 1654 LVRLLRSGSEGTVIGSLNALLVLESDDGTSAEAMAESGAIEALLELLRS--HQCEETAAR 1711
LV+LL S +E + +L AL + S +A+ ++GA+ AL++LL S Q + A
Sbjct: 59 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 118
Query: 1712 LLEVLLNNGKIRESKATKSAILP-LSQYLLDPXXXXXXXXXXXXXXXGDLFQNEGLARSA 1770
L + + G + + LP L Q L P NE +
Sbjct: 119 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQIQAVI 177
Query: 1771 DAVSACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQ 1820
DA A ALV +L P E++ A+ AL N+ K+AV EAG ++
Sbjct: 178 DA-GALPALVQLLSS-PNEQILQEALWALSNIASGGNEQKQAVKEAGALE 225
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 68/163 (41%), Gaps = 10/163 (6%)
Query: 1259 FSADHIRNAESARQAV--QPLVEILNTGLEREQHAAIAALVRLLSENPS----RALAVAD 1312
F I N E A V ++E++ + +Q +A +LLS+ P+ ++
Sbjct: 5 FHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPG 64
Query: 1313 VEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFS 1372
V V+ L R NC+++ + A L + GN+ V A V + LL +EF
Sbjct: 65 VVARFVEFLKR--KENCTLQFES-AWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE 121
Query: 1373 PAQHSVVRALDKLVDDEQLA-ELVAAHGAVIPLVGLLYGRNYM 1414
Q V AL + D + + V + PL+ L +N +
Sbjct: 122 DVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRL 164
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 68/163 (41%), Gaps = 10/163 (6%)
Query: 1259 FSADHIRNAESARQAV--QPLVEILNTGLEREQHAAIAALVRLLSENPS----RALAVAD 1312
F I N E A V ++E++ + +Q +A +LLS+ P+ ++
Sbjct: 2 FHEAQISNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPG 61
Query: 1313 VEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFS 1372
V V+ L R NC+++ + A L + GN+ V A V + LL +EF
Sbjct: 62 VVARFVEFLKR--KENCTLQFES-AWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE 118
Query: 1373 PAQHSVVRALDKLVDDEQLA-ELVAAHGAVIPLVGLLYGRNYM 1414
Q V AL + D + + V + PL+ L +N +
Sbjct: 119 DVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRL 161
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+
And Phosphatidylserine
Length = 139
Score = 35.0 bits (79), Expect = 0.42, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 2001 YCKLTL----GNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKSS 2056
Y KL L N ++TK + + NP+W ESF + + K ++L + + + ++
Sbjct: 41 YVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRTTRND 100
Query: 2057 F-GKVTIQIDRVVMLGAVAGEYTLLPESK 2084
F G ++ + ++ + A +G Y LL + +
Sbjct: 101 FMGSLSFGVSELMKMPA-SGWYKLLNQEE 128
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 35.0 bits (79), Expect = 0.42, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 2001 YCKLTL----GNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKSS 2056
Y KL L N ++TK + + NP+W ESF + + K ++L + + + ++
Sbjct: 40 YVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRTTRND 99
Query: 2057 F-GKVTIQIDRVVMLGAVAGEYTLLPESK 2084
F G ++ + ++ + A +G Y LL + +
Sbjct: 100 FMGSLSFGVSELMKMPA-SGWYKLLNQEE 127
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 35.0 bits (79), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 26/129 (20%)
Query: 1778 ALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQA 1837
ALV +L P E + AI L NL++Y K AV A G+Q ++ L+ ++P+
Sbjct: 107 ALVRMLSS-PVESVLFYAITTLHNLLLYQEGAKMAVRLADGLQKMVPLLNKNNPK----- 160
Query: 1838 AMFVKLLFSNHTIQEYASSETVRAITA--------------AIEKELWATGTVNEEYLKA 1883
F+ + + Y + E+ I A + EK LW T V LK
Sbjct: 161 --FLAITTDCLQLLAYGNQESKLIILANGGPQALVQIMRNYSYEKLLWTTSRV----LKV 214
Query: 1884 LNALFNNFP 1892
L+ +N P
Sbjct: 215 LSVCPSNKP 223
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 1178 CPSNKIVMVEAGALEALTKYLS 1199
CPSNK +VEAG ++AL K+L+
Sbjct: 218 CPSNKPAIVEAGGMQALGKHLT 239
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 35.0 bits (79), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 103/243 (42%), Gaps = 23/243 (9%)
Query: 480 ITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGS 539
+ A +P +Q+L +GS + KE + L N+ S D R V +A+ +L L +
Sbjct: 83 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNK 142
Query: 540 ANGKEIAAKTLNHLIH----KSDTATISQLTALLTSDLPESKVYVLDA---LKSMLSVVS 592
+ A TL++L + D + +SQ L +Y +D + + ++
Sbjct: 143 PSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLA-----KLIYSMDTETLVDACWAISY 197
Query: 593 FSDILREGSAANDAV---ETMIKILSSTKEETQAKSASALAGIFETRKDLR-ESSIAVKT 648
SD +E A V + ++++LS Q + A+ I T DL+ + I
Sbjct: 198 LSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV-TGNDLQTQVVINAGV 256
Query: 649 LWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAE 708
L ++ LL E I EA ++ I E + A + + + PLV L LEVAE
Sbjct: 257 LPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ-AVIDANLIPPLVKL-----LEVAE 310
Query: 709 QAT 711
T
Sbjct: 311 DKT 313
Score = 33.9 bits (76), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 111/282 (39%), Gaps = 43/282 (15%)
Query: 462 SVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKE-DSASILRNLCNHSEDIRA 520
+V +LS E+ + AG +P LV+ + + + ++A L N+ + +
Sbjct: 22 TVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK 81
Query: 521 CVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYV 580
V ADAVP + LL GS KE A L ++ D + + YV
Sbjct: 82 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNV----------------AGDSTDYRDYV 125
Query: 581 LDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLR 640
L +A+E ++ + +S K + L+ + +K
Sbjct: 126 LQC---------------------NAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP 164
Query: 641 ESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSP--LVVL 698
+ S+ + L ++ KL+ LV+A C A +LS + AV D P LV L
Sbjct: 165 DWSVVSQALPTLAKLIYSMDTETLVDA--CWAISYLSDGPQEAIQAVI-DVRIPKRLVEL 221
Query: 699 AGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVL 740
V A A+ N++ +++ + + +LPA R+L
Sbjct: 222 LSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 263
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 35.0 bits (79), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 103/243 (42%), Gaps = 23/243 (9%)
Query: 480 ITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGS 539
+ A +P +Q+L +GS + KE + L N+ S D R V +A+ +L L +
Sbjct: 82 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNK 141
Query: 540 ANGKEIAAKTLNHLIH----KSDTATISQLTALLTSDLPESKVYVLDA---LKSMLSVVS 592
+ A TL++L + D + +SQ L +Y +D + + ++
Sbjct: 142 PSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLA-----KLIYSMDTETLVDACWAISY 196
Query: 593 FSDILREGSAANDAV---ETMIKILSSTKEETQAKSASALAGIFETRKDLR-ESSIAVKT 648
SD +E A V + ++++LS Q + A+ I T DL+ + I
Sbjct: 197 LSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV-TGNDLQTQVVINAGV 255
Query: 649 LWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAE 708
L ++ LL E I EA ++ I E + A + + + PLV L LEVAE
Sbjct: 256 LPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ-AVIDANLIPPLVKL-----LEVAE 309
Query: 709 QAT 711
T
Sbjct: 310 DKT 312
Score = 34.3 bits (77), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 111/282 (39%), Gaps = 43/282 (15%)
Query: 462 SVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKE-DSASILRNLCNHSEDIRA 520
+V +LS E+ + AG +P LV+ + + + ++A L N+ + +
Sbjct: 21 TVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK 80
Query: 521 CVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYV 580
V ADAVP + LL GS KE A L ++ D + + YV
Sbjct: 81 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNV----------------AGDSTDYRDYV 124
Query: 581 LDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLR 640
L +A+E ++ + +S K + L+ + +K
Sbjct: 125 LQC---------------------NAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP 163
Query: 641 ESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSP--LVVL 698
+ S+ + L ++ KL+ LV+A C A +LS + AV D P LV L
Sbjct: 164 DWSVVSQALPTLAKLIYSMDTETLVDA--CWAISYLSDGPQEAIQAVI-DVRIPKRLVEL 220
Query: 699 AGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVL 740
V A A+ N++ +++ + + +LPA R+L
Sbjct: 221 LSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 262
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 35.0 bits (79), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 103/243 (42%), Gaps = 23/243 (9%)
Query: 480 ITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGS 539
+ A +P +Q+L +GS + KE + L N+ S D R V +A+ +L L +
Sbjct: 81 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNK 140
Query: 540 ANGKEIAAKTLNHLIH----KSDTATISQLTALLTSDLPESKVYVLDA---LKSMLSVVS 592
+ A TL++L + D + +SQ L +Y +D + + ++
Sbjct: 141 PSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLA-----KLIYSMDTETLVDACWAISY 195
Query: 593 FSDILREGSAANDAV---ETMIKILSSTKEETQAKSASALAGIFETRKDLR-ESSIAVKT 648
SD +E A V + ++++LS Q + A+ I T DL+ + I
Sbjct: 196 LSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV-TGNDLQTQVVINAGV 254
Query: 649 LWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAE 708
L ++ LL E I EA ++ I E + A + + + PLV L LEVAE
Sbjct: 255 LPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ-AVIDANLIPPLVKL-----LEVAE 308
Query: 709 QAT 711
T
Sbjct: 309 YKT 311
Score = 34.3 bits (77), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 111/282 (39%), Gaps = 43/282 (15%)
Query: 462 SVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKE-DSASILRNLCNHSEDIRA 520
+V +LS E+ + AG +P LV+ + + + ++A L N+ + +
Sbjct: 20 TVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK 79
Query: 521 CVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYV 580
V ADAVP + LL GS KE A L ++ D + + YV
Sbjct: 80 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNV----------------AGDSTDYRDYV 123
Query: 581 LDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLR 640
L +A+E ++ + +S K + L+ + +K
Sbjct: 124 LQC---------------------NAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP 162
Query: 641 ESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSP--LVVL 698
+ S+ + L ++ KL+ LV+A C A +LS + AV D P LV L
Sbjct: 163 DWSVVSQALPTLAKLIYSMDTETLVDA--CWAISYLSDGPQEAIQAVI-DVRIPKRLVEL 219
Query: 699 AGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVL 740
V A A+ N++ +++ + + +LPA R+L
Sbjct: 220 LSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 261
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 34.7 bits (78), Expect = 0.51, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 20/119 (16%)
Query: 1981 LVVIIKRGNNM----KQSVGNPSVYCKLTLGNTPP----RQTKIVSTGPNPEWEESFAWS 2032
L+V+++ N+ + +P Y KL L P ++TK + NPEW E+F +
Sbjct: 33 LIVVVRDAKNLVPMDPNGLSDP--YVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 90
Query: 2033 FEIPPKGQKLHIS------CKNKSKMGKSSFGKVTIQIDRV----VMLGAVAGEYTLLP 2081
+ K ++L + MG SFG +Q V +L GEY +P
Sbjct: 91 LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFKLLSQEEGEYFNVP 149
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 34.7 bits (78), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 103/243 (42%), Gaps = 23/243 (9%)
Query: 480 ITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGS 539
+ A +P +Q+L +GS + KE + L N+ S D R V +A+ +L L +
Sbjct: 81 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNK 140
Query: 540 ANGKEIAAKTLNHLIH----KSDTATISQLTALLTSDLPESKVYVLDA---LKSMLSVVS 592
+ A TL++L + D + +SQ L +Y +D + + ++
Sbjct: 141 PSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLA-----KLIYSMDTETLVDACWAISY 195
Query: 593 FSDILREGSAANDAV---ETMIKILSSTKEETQAKSASALAGIFETRKDLR-ESSIAVKT 648
SD +E A V + ++++LS Q + A+ I T DL+ + I
Sbjct: 196 LSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV-TGNDLQTQVVINAGV 254
Query: 649 LWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAE 708
L ++ LL E I EA ++ I E + A + + + PLV L LEVAE
Sbjct: 255 LPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ-AVIDANLIPPLVKL-----LEVAE 308
Query: 709 QAT 711
T
Sbjct: 309 YKT 311
Score = 34.3 bits (77), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 111/282 (39%), Gaps = 43/282 (15%)
Query: 462 SVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKE-DSASILRNLCNHSEDIRA 520
+V +LS E+ + AG +P LV+ + + + ++A L N+ + +
Sbjct: 20 TVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK 79
Query: 521 CVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYV 580
V ADAVP + LL GS KE A L ++ D + + YV
Sbjct: 80 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNV----------------AGDSTDYRDYV 123
Query: 581 LDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLR 640
L +A+E ++ + +S K + L+ + +K
Sbjct: 124 LQC---------------------NAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP 162
Query: 641 ESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSP--LVVL 698
+ S+ + L ++ KL+ LV+A C A +LS + AV D P LV L
Sbjct: 163 DWSVVSQALPTLAKLIYSMDTETLVDA--CWAISYLSDGPQEAIQAVI-DVRIPKRLVEL 219
Query: 699 AGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVL 740
V A A+ N++ +++ + + +LPA R+L
Sbjct: 220 LSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 261
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 34.7 bits (78), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 103/243 (42%), Gaps = 23/243 (9%)
Query: 480 ITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGS 539
+ A +P +Q+L +GS + KE + L N+ S D R V +A+ +L L +
Sbjct: 82 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNK 141
Query: 540 ANGKEIAAKTLNHLIH----KSDTATISQLTALLTSDLPESKVYVLDA---LKSMLSVVS 592
+ A TL++L + D + +SQ L +Y +D + + ++
Sbjct: 142 PSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLA-----KLIYSMDTETLVDACWAISY 196
Query: 593 FSDILREGSAANDAV---ETMIKILSSTKEETQAKSASALAGIFETRKDLR-ESSIAVKT 648
SD +E A V + ++++LS Q + A+ I T DL+ + I
Sbjct: 197 LSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV-TGNDLQTQVVINAGV 255
Query: 649 LWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAE 708
L ++ LL E I EA ++ I E + A + + + PLV L LEVAE
Sbjct: 256 LPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ-AVIDANLIPPLVKL-----LEVAE 309
Query: 709 QAT 711
T
Sbjct: 310 DKT 312
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 111/282 (39%), Gaps = 43/282 (15%)
Query: 462 SVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKE-DSASILRNLCNHSEDIRA 520
+V +LS E+ + AG +P LV+ + + + ++A L N+ + +
Sbjct: 21 TVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK 80
Query: 521 CVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYV 580
V ADAVP + LL GS KE A L ++ D + + YV
Sbjct: 81 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNV----------------AGDSTDYRDYV 124
Query: 581 LDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLR 640
L +A+E ++ + +S K + L+ + +K
Sbjct: 125 LQC---------------------NAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP 163
Query: 641 ESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSP--LVVL 698
+ S+ + L ++ KL+ LV+A C A +LS + AV D P LV L
Sbjct: 164 DWSVVSQALPTLAKLIYSMDTETLVDA--CWAISYLSDGPQEAIQAVI-DVRIPKRLVEL 220
Query: 699 AGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVL 740
V A A+ N++ +++ + + +LPA R+L
Sbjct: 221 LSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 262
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 34.7 bits (78), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 103/243 (42%), Gaps = 23/243 (9%)
Query: 480 ITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGS 539
+ A +P +Q+L +GS + KE + L N+ S D R V +A+ +L L +
Sbjct: 83 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNK 142
Query: 540 ANGKEIAAKTLNHLIH----KSDTATISQLTALLTSDLPESKVYVLDA---LKSMLSVVS 592
+ A TL++L + D + +SQ L +Y +D + + ++
Sbjct: 143 PSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLA-----KLIYSMDTETLVDACWAISY 197
Query: 593 FSDILREGSAANDAV---ETMIKILSSTKEETQAKSASALAGIFETRKDLR-ESSIAVKT 648
SD +E A V + ++++LS Q + A+ I T DL+ + I
Sbjct: 198 LSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV-TGNDLQTQVVINAGV 256
Query: 649 LWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAE 708
L ++ LL E I EA ++ I E + A + + + PLV L LEVAE
Sbjct: 257 LPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ-AVIDANLIPPLVKL-----LEVAE 310
Query: 709 QAT 711
T
Sbjct: 311 DKT 313
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 111/282 (39%), Gaps = 43/282 (15%)
Query: 462 SVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKE-DSASILRNLCNHSEDIRA 520
+V +LS E+ + AG +P LV+ + + + ++A L N+ + +
Sbjct: 22 TVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK 81
Query: 521 CVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYV 580
V ADAVP + LL GS KE A L ++ D + + YV
Sbjct: 82 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNV----------------AGDSTDYRDYV 125
Query: 581 LDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLR 640
L +A+E ++ + +S K + L+ + +K
Sbjct: 126 LQC---------------------NAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP 164
Query: 641 ESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSP--LVVL 698
+ S+ + L ++ KL+ LV+A C A +LS + AV D P LV L
Sbjct: 165 DWSVVSQALPTLAKLIYSMDTETLVDA--CWAISYLSDGPQEAIQAVI-DVRIPKRLVEL 221
Query: 699 AGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVL 740
V A A+ N++ +++ + + +LPA R+L
Sbjct: 222 LSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 263
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 34.3 bits (77), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 79/167 (47%), Gaps = 27/167 (16%)
Query: 479 AITAAGGIPPLVQILESGSAKAKEDSASILRNLCN-HSEDIRACVESADAVPAL------ 531
A+ AG +P LVQ+L S + + +++ L N+ + +E I+A ++ A A+PAL
Sbjct: 49 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSS 107
Query: 532 ---------LWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLD 582
LW L N ++ G E + D + L LL+S P ++ + +
Sbjct: 108 PNEQILQEALWALSNIASGGNEQIQAVI-------DAGALPALVQLLSS--PNEQI-LQE 157
Query: 583 ALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASAL 629
AL ++ ++ S + ++ A+E + ++ S E+ Q ++ AL
Sbjct: 158 ALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 204
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
Query: 606 AVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILV 665
A+ ++++LSS E+ ++ AL+ I + ++ I L ++++LL +E IL
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 666 EASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSE 725
EA L+ I E + A + AL LV L SP ++ ++A AL+N+ +
Sbjct: 115 EALWALSNIASGGNEQIQ-AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK 173
Query: 726 KAIAE 730
+A+ E
Sbjct: 174 QAVKE 178
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 33.9 bits (76), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 1/135 (0%)
Query: 606 AVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILV 665
A+ ++++LSS E+ ++ AL+ I + ++ I L ++++LL +E IL
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 666 EASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSE 725
EA L+ I E + A + AL LV L SP ++ ++A AL+N+ +
Sbjct: 115 EALWALSNIASGGNEQIQ-AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK 173
Query: 726 KAIAEEIILPATRVL 740
+A+ E PA L
Sbjct: 174 QAVKEAGAEPALEQL 188
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 79/170 (46%), Gaps = 27/170 (15%)
Query: 479 AITAAGGIPPLVQILESGSAKAKEDSASILRNLCN-HSEDIRACVESADAVPAL------ 531
A+ AG +P LVQ+L S + + +++ L N+ + +E I+A ++ A A+PAL
Sbjct: 49 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSS 107
Query: 532 ---------LWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLD 582
LW L N ++ G E + D + L LL+S P ++ + +
Sbjct: 108 PNEQILQEALWALSNIASGGNEQIQAVI-------DAGALPALVQLLSS--PNEQI-LQE 157
Query: 583 ALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGI 632
AL ++ ++ S + ++ A + ++ SS E+ Q ++ AL I
Sbjct: 158 ALWALSNIASGGNEQKQAVKEAGAEPALEQLQSSPNEKIQKEAQEALEKI 207
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 33.9 bits (76), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 480 ITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGS 539
+ A +P +Q+L +GS + KE + L N+ S D R V +A+ +L L +
Sbjct: 169 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNK 228
Query: 540 ANGKEIAAKTLNHLIH----KSDTATISQ 564
+ A TL++L + D + +SQ
Sbjct: 229 PSLIRTATWTLSNLCRGKKPQPDWSVVSQ 257
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 111/282 (39%), Gaps = 43/282 (15%)
Query: 462 SVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKE-DSASILRNLCNHSEDIRA 520
+V +LS E+ + AG +P LV+ + + + ++A L N+ + +
Sbjct: 108 TVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK 167
Query: 521 CVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYV 580
V ADAVP + LL GS KE A L ++ D + + YV
Sbjct: 168 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNV----------------AGDSTDYRDYV 211
Query: 581 LDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLR 640
L +A+E ++ + +S K + L+ + +K
Sbjct: 212 LQC---------------------NAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP 250
Query: 641 ESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSP--LVVL 698
+ S+ + L ++ KL+ LV+A C A +LS + AV D P LV L
Sbjct: 251 DWSVVSQALPTLAKLIYSMDTETLVDA--CWAISYLSDGPQEAIQAVI-DVRIPKRLVEL 307
Query: 699 AGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVL 740
V A A+ N++ +++ + + +LPA R+L
Sbjct: 308 LSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 349
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 38/176 (21%)
Query: 1778 ALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQA 1837
ALVN+L P + + AI L NL+++ K AV AGG+Q ++ L+ +T+V+
Sbjct: 238 ALVNMLGS-PVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN----KTNVK- 291
Query: 1838 AMFVKLLFSNHTIQEYASSETVRAI--------------TAAIEKELWATGTVNEEYLKA 1883
F+ + I Y + E+ I T EK LW T V LK
Sbjct: 292 --FLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRV----LKV 345
Query: 1884 LNALFNNFPR-----------LRATEPATLSIPHLVTALKTGSE-ATQEAALDALF 1927
L+ +N P L T+P+ + + + L+ S+ AT++ ++ L
Sbjct: 346 LSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLL 401
>pdb|3SLA|A Chain A, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|B Chain B, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|C Chain C, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|D Chain D, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|E Chain E, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
Length = 168
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 665 VEASRCLAAIFLSVRENRE--VAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSE 722
VE +RC A ++ +RE +A + LV + GSPV V A L NL+L E
Sbjct: 70 VETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE 129
Query: 723 VSEKAI 728
++ A+
Sbjct: 130 GAKMAV 135
>pdb|3SL9|A Chain A, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|B Chain B, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|E Chain E, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|G Chain G, X-Ray Structure Of Beta Catenin In Complex With Bcl9
Length = 167
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 665 VEASRCLAAIFLSVRENRE--VAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSE 722
VE +RC A ++ +RE +A + LV + GSPV V A L NL+L E
Sbjct: 70 VETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE 129
Query: 723 VSEKAI 728
++ A+
Sbjct: 130 GAKMAV 135
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 33.5 bits (75), Expect = 1.5, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 14/71 (19%)
Query: 1980 TLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKG 2039
++ V+ +G K G+ Y + +G T R TK + NP WEE+F
Sbjct: 20 SITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKR-TKTIYGNLNPVWEENF---------- 68
Query: 2040 QKLHISCKNKS 2050
H C N S
Sbjct: 69 ---HFECHNSS 76
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha
(Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 32.7 bits (73), Expect = 2.1, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 2001 YCKLTL----GNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKSS 2056
Y KL L N ++TK + + NP+W ESF + + K ++L + + + ++
Sbjct: 42 YVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRTTRND 101
Query: 2057 F-GKVTIQIDRVVMLGAVAGEYTLLPESK 2084
F G ++ + + A +G Y LL + +
Sbjct: 102 FXGSLSFGVSELXKXPA-SGWYKLLNQEE 129
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 38/176 (21%)
Query: 1778 ALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQA 1837
ALV +L P + + AI L NL+++ K AV AGG+Q ++ L+ +T+V+
Sbjct: 102 ALVKMLGS-PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN----KTNVK- 155
Query: 1838 AMFVKLLFSNHTIQEYASSETVRAI--------------TAAIEKELWATGTVNEEYLKA 1883
F+ + I Y + E+ I T EK LW T V LK
Sbjct: 156 --FLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRV----LKV 209
Query: 1884 LNALFNNFPR-----------LRATEPATLSIPHLVTALKTGSE-ATQEAALDALF 1927
L+ +N P L T+P+ + + + L+ S+ AT++ ++ L
Sbjct: 210 LSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLL 265
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled Peptide
Inhibitor
Length = 518
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 38/176 (21%)
Query: 1778 ALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQA 1837
ALV +L P + + AI L NL+++ K AV AGG+Q ++ L+ ++ +
Sbjct: 92 ALVKMLGS-PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK----- 145
Query: 1838 AMFVKLLFSNHTIQEYASSETVRAI--------------TAAIEKELWATGTVNEEYLKA 1883
F+ + I Y + E+ I T EK LW T V LK
Sbjct: 146 --FLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRV----LKV 199
Query: 1884 LNALFNNFPR-----------LRATEPATLSIPHLVTALKTGSE-ATQEAALDALF 1927
L+ +N P L T+P+ + + + L+ S+ AT++ ++ L
Sbjct: 200 LSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLL 255
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 38/176 (21%)
Query: 1778 ALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQA 1837
ALV +L P + + AI L NL+++ K AV AGG+Q ++ L+ ++ +
Sbjct: 103 ALVKMLGS-PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK----- 156
Query: 1838 AMFVKLLFSNHTIQEYASSETVRAI--------------TAAIEKELWATGTVNEEYLKA 1883
F+ + I Y + E+ I T EK LW T V LK
Sbjct: 157 --FLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRV----LKV 210
Query: 1884 LNALFNNFPR-----------LRATEPATLSIPHLVTALKTGSE-ATQEAALDALF 1927
L+ +N P L T+P+ + + + L+ S+ AT++ ++ L
Sbjct: 211 LSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLL 266
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 38/176 (21%)
Query: 1778 ALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQA 1837
ALV +L P + + AI L NL+++ K AV AGG+Q ++ L+ ++ +
Sbjct: 109 ALVKMLGS-PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK----- 162
Query: 1838 AMFVKLLFSNHTIQEYASSETVRAI--------------TAAIEKELWATGTVNEEYLKA 1883
F+ + I Y + E+ I T EK LW T V LK
Sbjct: 163 --FLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRV----LKV 216
Query: 1884 LNALFNNFPR-----------LRATEPATLSIPHLVTALKTGSE-ATQEAALDALF 1927
L+ +N P L T+P+ + + + L+ S+ AT++ ++ L
Sbjct: 217 LSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLL 272
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 38/176 (21%)
Query: 1778 ALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQA 1837
ALV +L P + + AI L NL+++ K AV AGG+Q ++ L+ ++ +
Sbjct: 90 ALVKMLGS-PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK----- 143
Query: 1838 AMFVKLLFSNHTIQEYASSETVRAI--------------TAAIEKELWATGTVNEEYLKA 1883
F+ + I Y + E+ I T EK LW T V LK
Sbjct: 144 --FLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRV----LKV 197
Query: 1884 LNALFNNFPR-----------LRATEPATLSIPHLVTALKTGSE-ATQEAALDALF 1927
L+ +N P L T+P+ + + + L+ S+ AT++ ++ L
Sbjct: 198 LSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLL 253
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 38/176 (21%)
Query: 1778 ALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQA 1837
ALV +L P + + AI L NL+++ K AV AGG+Q ++ L+ ++ +
Sbjct: 94 ALVKMLGS-PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK----- 147
Query: 1838 AMFVKLLFSNHTIQEYASSETVRAI--------------TAAIEKELWATGTVNEEYLKA 1883
F+ + I Y + E+ I T EK LW T V LK
Sbjct: 148 --FLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRV----LKV 201
Query: 1884 LNALFNNFPR-----------LRATEPATLSIPHLVTALKTGSE-ATQEAALDALF 1927
L+ +N P L T+P+ + + + L+ S+ AT++ ++ L
Sbjct: 202 LSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLL 257
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 38/176 (21%)
Query: 1778 ALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQA 1837
ALV +L P + + AI L NL+++ K AV AGG+Q ++ L+ ++ +
Sbjct: 108 ALVKMLGS-PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK----- 161
Query: 1838 AMFVKLLFSNHTIQEYASSETVRAI--------------TAAIEKELWATGTVNEEYLKA 1883
F+ + I Y + E+ I T EK LW T V LK
Sbjct: 162 --FLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRV----LKV 215
Query: 1884 LNALFNNFPR-----------LRATEPATLSIPHLVTALKTGSE-ATQEAALDALF 1927
L+ +N P L T+P+ + + + L+ S+ AT++ ++ L
Sbjct: 216 LSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLL 271
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 38/176 (21%)
Query: 1778 ALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQA 1837
ALV +L P + + AI L NL+++ K AV AGG+Q ++ L+ ++ +
Sbjct: 107 ALVKMLGS-PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK----- 160
Query: 1838 AMFVKLLFSNHTIQEYASSETVRAI--------------TAAIEKELWATGTVNEEYLKA 1883
F+ + I Y + E+ I T EK LW T V LK
Sbjct: 161 --FLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRV----LKV 214
Query: 1884 LNALFNNFPR-----------LRATEPATLSIPHLVTALKTGSE-ATQEAALDALF 1927
L+ +N P L T+P+ + + + L+ S+ AT++ ++ L
Sbjct: 215 LSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLL 270
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 38/176 (21%)
Query: 1778 ALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQA 1837
ALV +L P + + AI L NL+++ K AV AGG+Q ++ L+ ++ +
Sbjct: 105 ALVKMLGS-PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK----- 158
Query: 1838 AMFVKLLFSNHTIQEYASSETVRAI--------------TAAIEKELWATGTVNEEYLKA 1883
F+ + I Y + E+ I T EK LW T V LK
Sbjct: 159 --FLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRV----LKV 212
Query: 1884 LNALFNNFPR-----------LRATEPATLSIPHLVTALKTGSE-ATQEAALDALF 1927
L+ +N P L T+P+ + + + L+ S+ AT++ ++ L
Sbjct: 213 LSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLL 268
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 38/176 (21%)
Query: 1778 ALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQA 1837
ALV +L P + + AI L NL+++ K AV AGG+Q ++ L+ ++ +
Sbjct: 106 ALVKMLGS-PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK----- 159
Query: 1838 AMFVKLLFSNHTIQEYASSETVRAI--------------TAAIEKELWATGTVNEEYLKA 1883
F+ + I Y + E+ I T EK LW T V LK
Sbjct: 160 --FLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRV----LKV 213
Query: 1884 LNALFNNFPR-----------LRATEPATLSIPHLVTALKTGSE-ATQEAALDALF 1927
L+ +N P L T+P+ + + + L+ S+ AT++ ++ L
Sbjct: 214 LSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLL 269
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 38/176 (21%)
Query: 1778 ALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQA 1837
ALV +L P + + AI L NL+++ K AV AGG+Q ++ L+ ++ +
Sbjct: 107 ALVKMLGS-PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK----- 160
Query: 1838 AMFVKLLFSNHTIQEYASSETVRAI--------------TAAIEKELWATGTVNEEYLKA 1883
F+ + I Y + E+ I T EK LW T V LK
Sbjct: 161 --FLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRV----LKV 214
Query: 1884 LNALFNNFPR-----------LRATEPATLSIPHLVTALKTGSE-ATQEAALDALF 1927
L+ +N P L T+P+ + + + L+ S+ AT++ ++ L
Sbjct: 215 LSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLL 270
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 38/176 (21%)
Query: 1778 ALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQA 1837
ALV +L P + + AI L NL+++ K AV AGG+Q ++ L+ ++ +
Sbjct: 90 ALVKMLGS-PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK----- 143
Query: 1838 AMFVKLLFSNHTIQEYASSETVRAI--------------TAAIEKELWATGTVNEEYLKA 1883
F+ + I Y + E+ I T EK LW T V LK
Sbjct: 144 --FLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRV----LKV 197
Query: 1884 LNALFNNFPR-----------LRATEPATLSIPHLVTALKTGSE-ATQEAALDALF 1927
L+ +N P L T+P+ + + + L+ S+ AT++ ++ L
Sbjct: 198 LSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLL 253
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 38/176 (21%)
Query: 1778 ALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQA 1837
ALV +L P + + AI L NL+++ K AV AGG+Q ++ L+ ++ +
Sbjct: 103 ALVKMLGS-PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK----- 156
Query: 1838 AMFVKLLFSNHTIQEYASSETVRAI--------------TAAIEKELWATGTVNEEYLKA 1883
F+ + I Y + E+ I T EK LW T V LK
Sbjct: 157 --FLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRV----LKV 210
Query: 1884 LNALFNNFPR-----------LRATEPATLSIPHLVTALKTGSE-ATQEAALDALF 1927
L+ +N P L T+P+ + + + L+ S+ AT++ ++ L
Sbjct: 211 LSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLL 266
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 665 VEASRCLAAIFLSVRENRE--VAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSE 722
VE +RC A ++ +RE +A + LV GSPV V A L NL+L E
Sbjct: 16 VETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKXLGSPVDSVLFYAITTLHNLLLHQE 75
Query: 723 VSEKAI 728
++ A+
Sbjct: 76 GAKXAV 81
Score = 31.2 bits (69), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 25/120 (20%)
Query: 1787 PTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFVKLLFS 1846
P + + AI L NL+++ K AV AGG+Q + L+ ++ + F+ +
Sbjct: 55 PVDSVLFYAITTLHNLLLHQEGAKXAVRLAGGLQKXVALLNKTNVK-------FLAITTD 107
Query: 1847 NHTIQEYASSETVRAI--------------TAAIEKELWATGTVNEEYLKALNALFNNFP 1892
I Y + E+ I T EK LW T V LK L+ +N P
Sbjct: 108 CLQILAYGNQESKLIILASGGPQALVNIXRTYTYEKLLWTTSRV----LKVLSVCSSNKP 163
>pdb|3TT9|A Chain A, Crystal Structure Of The Stable Degradation Fragment Of
Human Plakophilin 2 Isoform A (Pkp2a) C752r Variant
Length = 233
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 1795 AIC-ALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSS-DPETSVQAAMFVKLLFSNHTIQE 1852
A+C AL+NLV NK VAE GV +L ++ + D ET Q + L SN ++
Sbjct: 71 AVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKN 130
Query: 1853 YASSETVRAITAAI 1866
+E + +T I
Sbjct: 131 LMITEALLTLTENI 144
>pdb|3L6X|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-Cadherin
pdb|3L6Y|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|C Chain C, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|E Chain E, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
Length = 584
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 462 SVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLC-NHSEDIRA 520
+ A L L ND K + GIP LV +L+ + + L+N+ +D +
Sbjct: 68 AAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI 127
Query: 521 CVESADAVPALLWLLK 536
+++ D VPAL+ LL+
Sbjct: 128 AIKNCDGVPALVRLLR 143
>pdb|1EG7|A Chain A, The Crystal Structure Of Formyltetrahydrofolate Synthetase
From Moorella Thermoacetica
pdb|1EG7|B Chain B, The Crystal Structure Of Formyltetrahydrofolate Synthetase
From Moorella Thermoacetica
Length = 557
Score = 31.6 bits (70), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 1581 IHILQQRAVKALVSIALTWPNEIAKEGGVTELSKIILQ---ADPSLPHALWESAASVLSS 1637
+++L + KA +AL+W EGG+ EL++ +LQ + PS H L+ S+
Sbjct: 392 LNLLYELCAKAGAEVALSWAK--GGEGGL-ELARKVLQTLESRPSNFHVLYNLDLSIKDK 448
Query: 1638 ILQFSSEFY 1646
I + ++E Y
Sbjct: 449 IAKIATEIY 457
>pdb|1FPM|A Chain A, Monovalent Cation Binding Sites In
N10-formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FPM|B Chain B, Monovalent Cation Binding Sites In
N10-formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FP7|A Chain A, Monovalent Cation Binding Sites In
N10-Formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FP7|B Chain B, Monovalent Cation Binding Sites In
N10-Formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|3PZX|A Chain A, Native Crystal Structure Of N10-Formyltetrahydrofolate
Synthetase
pdb|3PZX|B Chain B, Native Crystal Structure Of N10-Formyltetrahydrofolate
Synthetase
pdb|3QB6|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Folate
pdb|3QB6|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Folate
pdb|3RBO|A Chain A, Crystal Structure Of N10-Formyltetrahydrofolate Synthetase
With Adp And Formylphosphate
pdb|3RBO|B Chain B, Crystal Structure Of N10-Formyltetrahydrofolate Synthetase
With Adp And Formylphosphate
pdb|3SIN|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Zd9331 And Formylphosphate
pdb|3SIN|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Zd9331 And Formylphosphate
pdb|3QUS|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Atpgs
pdb|3QUS|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Atpgs
Length = 557
Score = 31.2 bits (69), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 1581 IHILQQRAVKALVSIALTWPNEIAKEGGVTELSKIILQ---ADPSLPHALWESAASVLSS 1637
+++L + KA +AL+W EGG+ EL++ +LQ + PS H L+ S+
Sbjct: 392 LNLLYELCAKAGAEVALSWAK--GGEGGL-ELARKVLQTLESRPSNFHVLYNLDLSIKDK 448
Query: 1638 ILQFSSEFY 1646
I + ++E Y
Sbjct: 449 IAKIATEIY 457
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,080,153
Number of Sequences: 62578
Number of extensions: 1851395
Number of successful extensions: 5455
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 5014
Number of HSP's gapped (non-prelim): 356
length of query: 2100
length of database: 14,973,337
effective HSP length: 114
effective length of query: 1986
effective length of database: 7,839,445
effective search space: 15569137770
effective search space used: 15569137770
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)