Query 000133
Match_columns 2100
No_of_seqs 869 out of 3877
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 19:57:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000133.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000133hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 2E-262 3E-267 2617.5 190.5 2096 1-2100 5-2102(2102)
2 PLN03200 cellulose synthase-in 100.0 2E-119 5E-124 1222.7 137.7 1626 55-1977 14-1845(2102)
3 COG5064 SRP1 Karyopherin (impo 100.0 9E-36 2E-40 327.0 27.7 417 402-857 73-498 (526)
4 KOG0166 Karyopherin (importin) 100.0 5.8E-35 1.2E-39 352.4 36.3 415 402-857 68-488 (514)
5 KOG4224 Armadillo repeat prote 100.0 1.4E-29 3.1E-34 280.8 26.5 442 91-676 43-493 (550)
6 KOG4224 Armadillo repeat prote 100.0 3.3E-28 7.2E-33 270.1 31.5 442 224-763 44-496 (550)
7 KOG0166 Karyopherin (importin) 100.0 1.9E-27 4.2E-32 287.5 38.6 406 187-759 68-485 (514)
8 COG5064 SRP1 Karyopherin (impo 100.0 1.2E-27 2.6E-32 263.4 26.1 422 96-635 72-497 (526)
9 KOG1824 TATA-binding protein-i 100.0 1.6E-24 3.4E-29 266.1 53.9 1025 404-1599 9-1188(1233)
10 PF05804 KAP: Kinesin-associat 99.9 4E-18 8.6E-23 219.6 48.3 526 6-642 120-657 (708)
11 PF05804 KAP: Kinesin-associat 99.8 3.6E-18 7.8E-23 220.0 37.2 392 58-557 254-651 (708)
12 KOG1048 Neural adherens juncti 99.8 8.7E-19 1.9E-23 218.6 25.1 421 54-557 233-686 (717)
13 KOG4199 Uncharacterized conser 99.8 2.9E-16 6.3E-21 174.6 27.8 363 11-472 61-445 (461)
14 KOG2122 Beta-catenin-binding p 99.7 6.9E-16 1.5E-20 196.7 25.0 372 58-516 201-604 (2195)
15 KOG2171 Karyopherin (importin) 99.7 1.4E-12 3.1E-17 168.7 54.7 856 56-985 6-984 (1075)
16 KOG1048 Neural adherens juncti 99.7 5.9E-15 1.3E-19 184.8 25.0 378 372-754 246-678 (717)
17 KOG2122 Beta-catenin-binding p 99.6 1.2E-14 2.6E-19 185.6 24.0 387 99-557 201-603 (2195)
18 KOG4500 Rho/Rac GTPase guanine 99.6 7.1E-13 1.5E-17 152.3 32.5 426 374-804 57-517 (604)
19 KOG2171 Karyopherin (importin) 99.6 1.3E-09 2.9E-14 141.7 64.1 485 187-789 6-529 (1075)
20 KOG4199 Uncharacterized conser 99.6 1.9E-12 4.1E-17 144.7 29.9 332 183-556 102-445 (461)
21 KOG4500 Rho/Rac GTPase guanine 99.6 2.3E-12 5.1E-17 148.1 29.8 448 64-555 52-519 (604)
22 KOG1824 TATA-binding protein-i 99.5 4.8E-08 1E-12 122.9 65.0 771 54-899 47-885 (1233)
23 PRK09687 putative lyase; Provi 99.5 8.1E-13 1.8E-17 156.8 21.9 252 442-757 23-279 (280)
24 PRK09687 putative lyase; Provi 99.5 2.6E-12 5.6E-17 152.5 22.0 253 401-715 24-278 (280)
25 KOG1242 Protein containing ada 99.4 3.4E-12 7.4E-17 156.5 20.6 383 359-765 97-488 (569)
26 KOG1293 Proteins containing ar 99.4 4.3E-10 9.4E-15 137.6 37.7 493 194-761 18-534 (678)
27 PRK13800 putative oxidoreducta 99.4 1.6E-11 3.5E-16 170.1 28.1 278 1229-1594 619-896 (897)
28 PRK13800 putative oxidoreducta 99.4 2.3E-11 4.9E-16 168.7 28.0 276 399-756 620-895 (897)
29 PF10508 Proteasom_PSMB: Prote 99.4 2E-09 4.4E-14 139.5 39.2 368 363-739 43-441 (503)
30 PF01602 Adaptin_N: Adaptin N 99.3 1E-09 2.2E-14 146.4 35.9 495 23-632 18-522 (526)
31 PF10508 Proteasom_PSMB: Prote 99.3 1.1E-08 2.4E-13 132.7 41.2 390 57-543 41-450 (503)
32 KOG1241 Karyopherin (importin) 99.2 3.2E-07 6.8E-12 114.2 46.1 766 22-901 12-856 (859)
33 PF01602 Adaptin_N: Adaptin N 99.2 5.1E-09 1.1E-13 139.7 33.4 400 402-853 116-522 (526)
34 KOG1222 Kinesin associated pro 99.2 5.9E-09 1.3E-13 121.6 27.2 380 1289-1687 280-672 (791)
35 KOG2023 Nuclear transport rece 99.2 8E-08 1.7E-12 117.0 36.8 586 185-853 128-855 (885)
36 PF04826 Arm_2: Armadillo-like 99.2 8.9E-10 1.9E-14 127.7 19.6 227 438-709 8-252 (254)
37 cd08391 C2A_C2C_Synaptotagmin_ 99.1 8.3E-11 1.8E-15 123.0 7.5 113 1979-2097 1-121 (121)
38 KOG1241 Karyopherin (importin) 99.1 2.6E-06 5.7E-11 106.2 47.2 479 187-721 4-532 (859)
39 KOG1293 Proteins containing ar 99.1 3.3E-08 7.2E-13 121.5 30.3 497 104-727 18-541 (678)
40 cd04036 C2_cPLA2 C2 domain pre 99.1 2.4E-10 5.3E-15 118.8 8.0 111 1980-2095 1-115 (119)
41 KOG1222 Kinesin associated pro 99.1 1.1E-07 2.5E-12 111.2 30.3 406 9-522 260-672 (791)
42 PF04826 Arm_2: Armadillo-like 99.1 5.5E-09 1.2E-13 121.2 19.7 192 358-556 12-206 (254)
43 KOG2023 Nuclear transport rece 99.1 2.1E-07 4.4E-12 113.5 32.7 627 95-764 128-821 (885)
44 cd08678 C2_C21orf25-like C2 do 99.0 4.1E-10 8.9E-15 118.3 8.5 116 1981-2098 1-120 (126)
45 cd08681 C2_fungal_Inn1p-like C 99.0 4.6E-10 1E-14 116.7 7.3 103 1979-2083 1-106 (118)
46 PTZ00429 beta-adaptin; Provisi 99.0 1.9E-06 4.2E-11 114.3 41.7 467 402-954 70-546 (746)
47 cd04015 C2_plant_PLD C2 domain 99.0 8.4E-10 1.8E-14 119.9 8.5 106 1979-2086 7-144 (158)
48 cd00020 ARM Armadillo/beta-cat 99.0 5.8E-09 1.3E-13 108.8 14.0 117 438-554 3-119 (120)
49 cd04016 C2_Tollip C2 domain pr 99.0 1.5E-09 3.2E-14 111.5 8.8 102 1978-2082 1-106 (121)
50 COG5215 KAP95 Karyopherin (imp 99.0 5.2E-06 1.1E-10 99.7 39.2 470 196-723 16-533 (858)
51 cd04044 C2A_Tricalbin-like C2 98.9 1.6E-09 3.5E-14 113.8 8.0 116 1979-2099 2-124 (124)
52 cd08378 C2B_MCTP_PRT_plant C2 98.9 2.9E-09 6.3E-14 110.5 9.1 99 1981-2083 2-105 (121)
53 cd00020 ARM Armadillo/beta-cat 98.9 1.1E-08 2.3E-13 106.9 13.1 118 396-513 3-120 (120)
54 cd04010 C2B_RasA3 C2 domain se 98.9 2.7E-09 5.9E-14 113.8 8.6 105 1981-2085 2-127 (148)
55 PTZ00429 beta-adaptin; Provisi 98.9 4E-05 8.7E-10 102.0 48.6 470 185-763 32-510 (746)
56 cd04024 C2A_Synaptotagmin-like 98.9 3.4E-09 7.4E-14 112.0 8.3 117 1979-2097 1-128 (128)
57 cd04050 C2B_Synaptotagmin-like 98.9 2.1E-09 4.6E-14 108.9 6.4 97 1980-2080 1-101 (105)
58 cd08379 C2D_MCTP_PRT_plant C2 98.9 3.1E-09 6.7E-14 109.9 7.4 103 1981-2086 2-116 (126)
59 cd08373 C2A_Ferlin C2 domain f 98.9 5.1E-09 1.1E-13 110.3 8.7 112 1986-2098 3-116 (127)
60 cd08394 C2A_Munc13 C2 domain f 98.9 3E-09 6.5E-14 108.0 6.0 105 1979-2088 2-110 (127)
61 cd04028 C2B_RIM1alpha C2 domai 98.9 5.6E-09 1.2E-13 110.5 8.3 103 1978-2082 28-139 (146)
62 cd04022 C2A_MCTP_PRT_plant C2 98.8 4E-09 8.7E-14 111.0 7.0 115 1981-2097 2-123 (127)
63 cd04032 C2_Perforin C2 domain 98.8 6.6E-09 1.4E-13 107.6 8.2 100 1977-2081 26-127 (127)
64 cd08400 C2_Ras_p21A1 C2 domain 98.8 8.5E-09 1.9E-13 108.0 8.9 116 1980-2098 5-123 (126)
65 cd08381 C2B_PI3K_class_II C2 d 98.8 5.9E-09 1.3E-13 108.4 6.6 102 1978-2079 12-121 (122)
66 KOG0213 Splicing factor 3b, su 98.8 3.7E-05 8E-10 95.1 39.4 542 105-717 563-1140(1172)
67 cd08685 C2_RGS-like C2 domain 98.8 3.6E-09 7.8E-14 109.3 4.8 101 1979-2079 12-119 (119)
68 cd08376 C2B_MCTP_PRT C2 domain 98.8 6.5E-09 1.4E-13 107.7 6.7 111 1980-2097 1-114 (116)
69 KOG1030 Predicted Ca2+-depende 98.8 4.2E-09 9.1E-14 109.4 5.1 93 1978-2073 5-100 (168)
70 COG5215 KAP95 Karyopherin (imp 98.8 0.00043 9.4E-09 83.9 46.7 623 22-788 16-692 (858)
71 cd08682 C2_Rab11-FIP_classI C2 98.8 1.3E-08 2.8E-13 107.0 8.2 101 1981-2082 1-110 (126)
72 cd08675 C2B_RasGAP C2 domain s 98.8 1.2E-08 2.6E-13 108.3 7.9 103 1981-2083 1-122 (137)
73 cd08375 C2_Intersectin C2 doma 98.8 8.6E-09 1.9E-13 109.1 6.6 89 1979-2069 15-106 (136)
74 cd04042 C2A_MCTP_PRT C2 domain 98.7 1.9E-08 4.1E-13 104.9 8.2 114 1981-2096 2-118 (121)
75 cd08401 C2A_RasA2_RasA3 C2 dom 98.7 2.5E-08 5.5E-13 103.5 8.6 106 1980-2087 1-110 (121)
76 KOG0168 Putative ubiquitin fus 98.7 4.3E-06 9.4E-11 105.1 28.4 254 403-659 170-438 (1051)
77 TIGR02270 conserved hypothetic 98.7 7.7E-07 1.7E-11 110.7 22.1 245 1271-1599 53-298 (410)
78 KOG0213 Splicing factor 3b, su 98.7 0.0001 2.2E-09 91.3 39.0 471 375-899 569-1064(1172)
79 cd00256 VATPase_H VATPase_H, r 98.7 8.9E-06 1.9E-10 100.5 30.6 347 53-430 52-426 (429)
80 cd00256 VATPase_H VATPase_H, r 98.7 2.8E-06 6.1E-11 104.9 26.2 336 357-719 52-425 (429)
81 cd04049 C2_putative_Elicitor-r 98.7 2E-08 4.3E-13 105.3 6.5 103 1979-2082 1-109 (124)
82 cd04029 C2A_SLP-4_5 C2 domain 98.7 1.9E-08 4.2E-13 105.0 6.2 102 1978-2079 14-124 (125)
83 cd04030 C2C_KIAA1228 C2 domain 98.7 1.7E-08 3.6E-13 106.5 5.6 101 1979-2079 16-126 (127)
84 cd04052 C2B_Tricalbin-like C2 98.7 1.7E-08 3.6E-13 103.4 5.2 102 1993-2099 8-110 (111)
85 cd04045 C2C_Tricalbin-like C2 98.7 2.1E-08 4.5E-13 103.9 6.0 102 1979-2083 1-105 (120)
86 cd04025 C2B_RasA1_RasA4 C2 dom 98.7 2.7E-08 5.8E-13 104.2 6.8 100 1981-2082 2-104 (123)
87 cd08382 C2_Smurf-like C2 domai 98.7 4.9E-08 1.1E-12 102.0 8.8 101 1981-2084 2-108 (123)
88 cd04014 C2_PKC_epsilon C2 doma 98.7 2.9E-08 6.2E-13 105.3 6.9 112 1978-2098 3-129 (132)
89 cd04041 C2A_fungal C2 domain f 98.7 2.3E-08 4.9E-13 102.4 5.6 92 1979-2071 1-101 (111)
90 KOG0168 Putative ubiquitin fus 98.7 1.6E-05 3.6E-10 100.1 30.9 408 198-700 181-653 (1051)
91 cd04038 C2_ArfGAP C2 domain pr 98.7 2E-08 4.4E-13 106.8 4.9 92 1979-2073 2-95 (145)
92 KOG1242 Protein containing ada 98.6 1.8E-05 3.9E-10 98.6 31.0 377 360-764 57-448 (569)
93 KOG1789 Endocytosis protein RM 98.6 0.0061 1.3E-07 78.4 52.4 506 178-701 1420-2141(2235)
94 cd08688 C2_KIAA0528-like C2 do 98.6 3E-08 6.5E-13 101.3 5.8 99 1981-2080 1-108 (110)
95 KOG0946 ER-Golgi vesicle-tethe 98.6 0.00012 2.5E-09 92.1 36.7 356 1272-1702 22-418 (970)
96 cd04039 C2_PSD C2 domain prese 98.6 3.8E-08 8.3E-13 99.6 5.7 90 1979-2069 1-97 (108)
97 cd08393 C2A_SLP-1_2 C2 domain 98.6 5.4E-08 1.2E-12 101.8 6.6 102 1978-2079 14-124 (125)
98 cd08392 C2A_SLP-3 C2 domain fi 98.6 4.3E-08 9.2E-13 102.6 5.7 91 1978-2068 14-113 (128)
99 cd08387 C2A_Synaptotagmin-8 C2 98.6 5.3E-08 1.1E-12 102.1 6.5 102 1978-2079 15-122 (124)
100 cd08389 C2A_Synaptotagmin-14_1 98.6 5.1E-08 1.1E-12 101.8 6.2 102 1979-2081 16-124 (124)
101 cd08521 C2A_SLP C2 domain firs 98.6 6E-08 1.3E-12 101.7 6.4 102 1978-2079 13-123 (123)
102 cd04033 C2_NEDD4_NEDD4L C2 dom 98.6 1E-07 2.2E-12 101.4 8.0 106 1980-2087 1-121 (133)
103 TIGR02270 conserved hypothetic 98.6 3.8E-06 8.3E-11 104.6 22.8 244 1230-1557 53-297 (410)
104 cd04011 C2B_Ferlin C2 domain s 98.6 8E-08 1.7E-12 98.5 6.5 96 1981-2079 6-108 (111)
105 cd08386 C2A_Synaptotagmin-7 C2 98.6 8.7E-08 1.9E-12 100.7 6.7 102 1979-2080 16-124 (125)
106 KOG0946 ER-Golgi vesicle-tethe 98.6 4.1E-05 9E-10 96.0 30.5 370 227-701 22-418 (970)
107 cd08385 C2A_Synaptotagmin-1-5- 98.5 8.8E-08 1.9E-12 100.5 6.2 102 1978-2079 15-122 (124)
108 cd04019 C2C_MCTP_PRT_plant C2 98.5 1.7E-07 3.7E-12 100.8 8.2 102 1980-2083 1-110 (150)
109 cd08390 C2A_Synaptotagmin-15-1 98.5 1.2E-07 2.6E-12 99.4 6.3 103 1978-2080 13-122 (123)
110 cd04026 C2_PKC_alpha_gamma C2 98.5 1.3E-07 2.8E-12 100.3 6.4 108 1978-2087 12-126 (131)
111 cd04043 C2_Munc13_fungal C2 do 98.5 1.9E-07 4.1E-12 98.3 7.6 112 1980-2098 2-121 (126)
112 cd08677 C2A_Synaptotagmin-13 C 98.5 1.2E-07 2.6E-12 95.6 5.4 87 1978-2067 13-106 (118)
113 cd04031 C2A_RIM1alpha C2 domai 98.5 2.1E-07 4.6E-12 97.8 7.5 91 1978-2068 15-114 (125)
114 KOG1062 Vesicle coat complex A 98.5 0.0021 4.5E-08 82.0 42.8 94 157-263 121-214 (866)
115 cd08383 C2A_RasGAP C2 domain ( 98.5 2.4E-07 5.2E-12 96.2 7.4 101 1980-2083 1-102 (117)
116 cd08377 C2C_MCTP_PRT C2 domain 98.5 2E-07 4.3E-12 97.1 6.7 100 1979-2083 1-103 (119)
117 cd04018 C2C_Ferlin C2 domain t 98.5 1.5E-07 3.2E-12 100.7 5.7 92 1980-2072 1-109 (151)
118 cd04054 C2A_Rasal1_RasA4 C2 do 98.5 3.1E-07 6.8E-12 95.6 7.9 101 1980-2082 1-105 (121)
119 cd04009 C2B_Munc13-like C2 dom 98.5 1.5E-07 3.3E-12 99.8 5.7 95 1979-2073 16-122 (133)
120 cd04020 C2B_SLP_1-2-3-4 C2 dom 98.5 2.1E-07 4.5E-12 101.7 6.7 104 1977-2080 25-137 (162)
121 cd04040 C2D_Tricalbin-like C2 98.4 3.6E-07 7.7E-12 94.5 7.6 103 1981-2084 1-106 (115)
122 cd08680 C2_Kibra C2 domain fou 98.4 2E-07 4.4E-12 96.5 5.5 101 1979-2079 14-124 (124)
123 cd04046 C2_Calpain C2 domain p 98.4 3.8E-07 8.3E-12 95.7 7.6 97 1979-2080 3-101 (126)
124 cd08690 C2_Freud-1 C2 domain f 98.4 5.9E-07 1.3E-11 95.9 8.8 115 1981-2096 6-135 (155)
125 cd08388 C2A_Synaptotagmin-4-11 98.4 2.7E-07 5.8E-12 96.9 5.9 93 1978-2070 15-115 (128)
126 cd04037 C2E_Ferlin C2 domain f 98.4 4.8E-07 1E-11 94.5 7.3 89 1980-2069 1-93 (124)
127 cd04051 C2_SRC2_like C2 domain 98.4 4.9E-07 1.1E-11 95.0 7.4 102 1980-2081 1-114 (125)
128 COG5181 HSH155 U2 snRNP splice 98.4 0.00024 5.2E-09 86.5 30.4 328 357-718 603-945 (975)
129 KOG2160 Armadillo/beta-catenin 98.4 1.3E-05 2.9E-10 94.0 19.5 200 8-213 78-281 (342)
130 cd04021 C2_E3_ubiquitin_ligase 98.4 4.8E-07 1E-11 94.7 7.0 87 1981-2070 4-92 (125)
131 cd08395 C2C_Munc13 C2 domain t 98.4 4.1E-07 9E-12 93.3 6.3 102 1981-2082 2-113 (120)
132 COG1413 FOG: HEAT repeat [Ener 98.4 6.1E-05 1.3E-09 94.2 26.0 277 1231-1593 43-331 (335)
133 KOG0212 Uncharacterized conser 98.4 3E-05 6.6E-10 94.0 21.4 417 406-855 6-444 (675)
134 KOG2160 Armadillo/beta-catenin 98.3 5.3E-05 1.2E-09 89.1 22.5 178 411-589 94-282 (342)
135 cd08686 C2_ABR C2 domain in th 98.3 1.1E-06 2.3E-11 88.4 7.0 80 1981-2066 1-92 (118)
136 cd08691 C2_NEDL1-like C2 domai 98.3 1.3E-06 2.9E-11 92.0 8.0 89 1980-2071 2-108 (137)
137 cd08405 C2B_Synaptotagmin-7 C2 98.3 5.5E-07 1.2E-11 96.1 5.2 90 1978-2067 14-111 (136)
138 cd08407 C2B_Synaptotagmin-13 C 98.3 6.9E-07 1.5E-11 94.1 5.4 87 1979-2065 15-111 (138)
139 COG1413 FOG: HEAT repeat [Ener 98.3 0.00016 3.5E-09 90.4 26.4 248 400-718 43-303 (335)
140 cd08409 C2B_Synaptotagmin-15 C 98.3 8.7E-07 1.9E-11 94.3 5.1 85 1979-2063 15-106 (137)
141 cd08676 C2A_Munc13-like C2 dom 98.2 1.3E-06 2.8E-11 93.6 6.0 97 1978-2079 27-153 (153)
142 cd08384 C2B_Rabphilin_Doc2 C2 98.2 1.2E-06 2.7E-11 93.1 5.7 89 1978-2066 12-108 (133)
143 cd00276 C2B_Synaptotagmin C2 d 98.2 6.6E-07 1.4E-11 95.4 3.4 102 1979-2082 14-123 (134)
144 cd04027 C2B_Munc13 C2 domain s 98.2 2.2E-06 4.7E-11 90.2 7.1 100 1981-2085 3-116 (127)
145 PF00168 C2: C2 domain; Inter 98.2 7.5E-07 1.6E-11 86.4 3.3 80 1981-2061 1-85 (85)
146 PF03224 V-ATPase_H_N: V-ATPas 98.2 2.5E-05 5.5E-10 95.8 17.3 226 444-709 57-304 (312)
147 cd04048 C2A_Copine C2 domain f 98.2 1.2E-06 2.6E-11 91.2 4.9 85 1994-2079 17-112 (120)
148 KOG3678 SARM protein (with ste 98.2 8.8E-05 1.9E-09 87.2 20.4 272 435-758 173-450 (832)
149 cd08410 C2B_Synaptotagmin-17 C 98.2 1.5E-06 3.2E-11 92.4 5.6 86 1979-2064 14-107 (135)
150 PF03224 V-ATPase_H_N: V-ATPas 98.2 2.8E-05 6.1E-10 95.4 17.6 221 54-280 55-293 (312)
151 KOG2759 Vacuolar H+-ATPase V1 98.2 0.00069 1.5E-08 80.6 27.6 347 53-430 64-439 (442)
152 cd04035 C2A_Rabphilin_Doc2 C2 98.2 1.9E-06 4.1E-11 90.3 6.0 94 1978-2071 14-115 (123)
153 cd08402 C2B_Synaptotagmin-1 C2 98.2 1.4E-06 3.1E-11 92.9 5.1 89 1978-2066 14-110 (136)
154 cd08406 C2B_Synaptotagmin-12 C 98.2 1.9E-06 4.2E-11 90.9 5.6 88 1978-2065 14-109 (136)
155 cd00275 C2_PLC_like C2 domain 98.1 5.1E-06 1.1E-10 87.8 8.3 100 1980-2083 3-112 (128)
156 KOG1060 Vesicle coat complex A 98.1 0.0015 3.3E-08 82.5 30.3 422 9-549 38-527 (968)
157 KOG3678 SARM protein (with ste 98.1 0.00013 2.8E-09 85.8 19.8 275 179-513 174-452 (832)
158 cd08403 C2B_Synaptotagmin-3-5- 98.1 2.7E-06 5.9E-11 90.5 5.2 88 1978-2065 13-108 (134)
159 KOG1062 Vesicle coat complex A 98.1 0.0016 3.5E-08 82.9 29.7 416 407-931 114-564 (866)
160 KOG2759 Vacuolar H+-ATPase V1 98.1 0.00074 1.6E-08 80.4 25.3 346 358-719 65-438 (442)
161 PLN03008 Phospholipase D delta 98.1 6.3E-06 1.4E-10 106.7 8.6 86 1996-2083 75-160 (868)
162 KOG0212 Uncharacterized conser 98.1 0.00022 4.8E-09 86.7 20.8 321 1356-1682 82-410 (675)
163 PF05536 Neurochondrin: Neuroc 98.1 0.0093 2E-07 78.0 37.5 241 6-257 2-261 (543)
164 cd04017 C2D_Ferlin C2 domain f 98.1 1.2E-05 2.5E-10 85.6 9.0 82 1981-2063 3-95 (135)
165 cd08404 C2B_Synaptotagmin-4 C2 98.1 4.3E-06 9.3E-11 89.2 5.5 89 1978-2066 14-110 (136)
166 KOG0211 Protein phosphatase 2A 98.0 0.0034 7.3E-08 83.1 32.4 565 64-718 92-663 (759)
167 KOG1059 Vesicle coat complex A 98.0 0.0027 5.8E-08 79.7 29.0 400 404-853 148-575 (877)
168 KOG1059 Vesicle coat complex A 98.0 0.0074 1.6E-07 76.0 32.6 254 142-514 146-402 (877)
169 KOG4413 26S proteasome regulat 98.0 0.0042 9E-08 70.8 27.9 347 1271-1679 81-440 (524)
170 KOG1060 Vesicle coat complex A 98.0 0.0068 1.5E-07 77.0 32.2 393 361-809 38-461 (968)
171 COG5181 HSH155 U2 snRNP splice 98.0 0.011 2.4E-07 72.7 32.5 261 402-679 606-873 (975)
172 cd08408 C2B_Synaptotagmin-14_1 98.0 7E-06 1.5E-10 87.2 5.1 88 1978-2065 14-110 (138)
173 PRK14707 hypothetical protein; 98.0 0.31 6.8E-06 68.8 82.3 584 114-761 97-698 (2710)
174 KOG0211 Protein phosphatase 2A 97.9 0.0053 1.1E-07 81.3 31.5 560 1232-1843 83-661 (759)
175 KOG4646 Uncharacterized conser 97.8 0.00014 3E-09 72.5 10.8 131 400-536 16-147 (173)
176 smart00239 C2 Protein kinase C 97.8 2.4E-05 5.2E-10 78.3 6.0 91 1980-2071 1-96 (101)
177 KOG4413 26S proteasome regulat 97.8 0.018 3.8E-07 66.0 28.7 279 187-513 84-377 (524)
178 KOG0567 HEAT repeat-containing 97.8 0.001 2.2E-08 74.5 18.8 258 1233-1556 5-280 (289)
179 cd08692 C2B_Tac2-N C2 domain s 97.8 2.7E-05 5.9E-10 80.8 5.7 88 1978-2066 13-109 (135)
180 PF05536 Neurochondrin: Neuroc 97.8 0.016 3.4E-07 75.9 32.2 238 1145-1386 5-260 (543)
181 cd04047 C2B_Copine C2 domain s 97.8 2.6E-05 5.7E-10 79.9 5.0 83 1985-2068 6-99 (110)
182 cd04013 C2_SynGAP_like C2 doma 97.8 5.5E-05 1.2E-09 80.1 7.4 104 1977-2085 9-117 (146)
183 KOG1061 Vesicle coat complex A 97.8 0.015 3.2E-07 74.9 29.7 472 402-960 51-534 (734)
184 cd00030 C2 C2 domain. The C2 d 97.7 7.4E-05 1.6E-09 74.6 6.3 94 1981-2075 1-98 (102)
185 KOG4151 Myosin assembly protei 97.6 0.0013 2.9E-08 84.4 18.2 243 516-760 494-741 (748)
186 KOG2259 Uncharacterized conser 97.6 0.00046 9.9E-09 85.4 13.4 242 1363-1624 203-463 (823)
187 KOG0567 HEAT repeat-containing 97.6 0.0041 8.8E-08 69.9 18.9 255 1191-1511 5-278 (289)
188 PRK14707 hypothetical protein; 97.5 1.4 3E-05 62.8 84.3 366 1190-1566 794-1170(2710)
189 KOG4646 Uncharacterized conser 97.5 0.00056 1.2E-08 68.3 9.1 123 359-482 17-139 (173)
190 KOG1943 Beta-tubulin folding c 97.4 1 2.2E-05 60.6 40.0 214 54-283 341-595 (1133)
191 KOG1789 Endocytosis protein RM 97.4 0.038 8.2E-07 71.6 26.3 323 416-744 1741-2143(2235)
192 KOG1061 Vesicle coat complex A 97.3 0.059 1.3E-06 69.6 27.3 179 53-260 12-192 (734)
193 COG5240 SEC21 Vesicle coat com 97.3 0.81 1.8E-05 56.8 38.0 273 361-674 267-553 (898)
194 PF00514 Arm: Armadillo/beta-c 97.3 0.00027 5.9E-09 57.6 4.1 41 473-513 1-41 (41)
195 COG5240 SEC21 Vesicle coat com 97.3 0.75 1.6E-05 57.0 33.5 294 1498-1826 278-578 (898)
196 KOG2259 Uncharacterized conser 97.2 0.0049 1.1E-07 76.7 15.3 246 528-793 200-463 (823)
197 KOG0915 Uncharacterized conser 97.2 0.14 3E-06 70.2 29.7 452 1165-1646 837-1350(1702)
198 KOG4535 HEAT and armadillo rep 97.2 0.0041 8.9E-08 74.3 14.0 181 457-674 406-601 (728)
199 KOG1077 Vesicle coat complex A 97.2 0.54 1.2E-05 59.8 32.1 309 364-729 152-498 (938)
200 PF14664 RICTOR_N: Rapamycin-i 97.2 0.068 1.5E-06 66.6 24.7 230 444-717 27-267 (371)
201 KOG2973 Uncharacterized conser 97.1 0.029 6.3E-07 64.5 19.2 275 1318-1600 5-318 (353)
202 PF13646 HEAT_2: HEAT repeats; 97.1 0.0015 3.4E-08 63.7 8.1 87 1233-1342 1-88 (88)
203 PF00514 Arm: Armadillo/beta-c 97.1 0.0009 1.9E-08 54.6 5.1 41 515-555 1-41 (41)
204 PLN02270 phospholipase D alpha 97.0 0.0011 2.3E-08 86.8 7.6 105 1978-2084 7-132 (808)
205 KOG2734 Uncharacterized conser 97.0 0.14 3E-06 61.8 23.8 258 74-451 104-370 (536)
206 PF13646 HEAT_2: HEAT repeats; 97.0 0.0018 4E-08 63.1 7.5 86 528-630 1-88 (88)
207 PF14664 RICTOR_N: Rapamycin-i 97.0 0.063 1.4E-06 66.8 22.5 223 1330-1556 38-269 (371)
208 KOG1943 Beta-tubulin folding c 97.0 2.9 6.3E-05 56.5 49.3 460 364-853 385-879 (1133)
209 KOG2973 Uncharacterized conser 97.0 0.088 1.9E-06 60.8 20.8 260 445-718 6-313 (353)
210 KOG2062 26S proteasome regulat 96.8 0.035 7.7E-07 70.3 18.0 281 419-752 398-688 (929)
211 KOG1517 Guanine nucleotide bin 96.8 0.041 8.9E-07 72.1 18.9 199 440-638 510-736 (1387)
212 KOG1078 Vesicle coat complex C 96.8 1.9 4.2E-05 56.1 32.9 426 1321-1803 69-531 (865)
213 COG5369 Uncharacterized conser 96.8 0.0075 1.6E-07 73.3 11.3 311 417-758 406-739 (743)
214 KOG1028 Ca2+-dependent phospho 96.7 0.0031 6.7E-08 79.7 7.7 101 1979-2079 167-273 (421)
215 KOG1077 Vesicle coat complex A 96.6 0.23 5.1E-06 62.9 22.8 295 1317-1637 112-433 (938)
216 KOG0915 Uncharacterized conser 96.6 6.4 0.00014 55.2 38.1 416 1229-1681 859-1309(1702)
217 KOG1078 Vesicle coat complex C 96.4 4 8.6E-05 53.3 32.0 138 607-759 393-531 (865)
218 KOG1517 Guanine nucleotide bin 96.4 0.093 2E-06 69.0 17.9 237 486-762 474-734 (1387)
219 COG5369 Uncharacterized conser 96.3 0.019 4.2E-07 69.9 10.8 306 162-512 408-740 (743)
220 PLN02952 phosphoinositide phos 96.3 0.0089 1.9E-07 77.2 8.6 117 1978-2098 469-599 (599)
221 PF12348 CLASP_N: CLASP N term 96.3 0.061 1.3E-06 63.1 15.2 151 607-764 55-210 (228)
222 PF10165 Ric8: Guanine nucleot 96.3 0.17 3.6E-06 65.1 20.1 272 165-471 3-337 (446)
223 PF13513 HEAT_EZ: HEAT-like re 96.3 0.0067 1.5E-07 53.2 5.1 55 704-758 1-55 (55)
224 KOG2062 26S proteasome regulat 96.3 0.26 5.6E-06 62.9 20.2 183 363-576 489-681 (929)
225 PF12348 CLASP_N: CLASP N term 96.3 0.031 6.6E-07 65.7 12.1 186 452-638 17-210 (228)
226 PF09759 Atx10homo_assoc: Spin 96.2 0.014 3E-07 57.4 7.4 66 459-524 3-70 (102)
227 KOG2734 Uncharacterized conser 96.2 0.62 1.3E-05 56.4 21.7 249 424-678 108-402 (536)
228 KOG4535 HEAT and armadillo rep 96.1 1.4 3E-05 53.8 24.1 189 616-807 360-560 (728)
229 PF10165 Ric8: Guanine nucleot 96.1 0.31 6.7E-06 62.7 20.7 252 381-636 3-339 (446)
230 PF12460 MMS19_C: RNAPII trans 96.1 2.6 5.6E-05 54.2 29.1 347 375-739 18-414 (415)
231 cd08374 C2F_Ferlin C2 domain s 95.8 0.017 3.7E-07 60.3 6.3 89 1981-2069 2-123 (133)
232 PLN02223 phosphoinositide phos 95.7 0.024 5.1E-07 71.8 8.0 115 1978-2098 408-537 (537)
233 smart00185 ARM Armadillo/beta- 95.7 0.018 3.9E-07 46.8 4.8 39 474-512 2-40 (41)
234 PF09759 Atx10homo_assoc: Spin 95.7 0.027 6E-07 55.4 6.6 68 417-484 3-72 (102)
235 KOG1240 Protein kinase contain 95.5 0.39 8.4E-06 64.7 18.2 313 359-702 423-747 (1431)
236 PF12460 MMS19_C: RNAPII trans 95.5 6 0.00013 50.9 29.1 345 403-763 2-397 (415)
237 PF13513 HEAT_EZ: HEAT-like re 95.5 0.02 4.3E-07 50.2 4.6 55 456-511 1-55 (55)
238 smart00185 ARM Armadillo/beta- 95.3 0.036 7.7E-07 45.1 5.3 40 516-555 2-41 (41)
239 KOG0696 Serine/threonine prote 95.3 0.0056 1.2E-07 72.0 0.5 100 1980-2080 181-287 (683)
240 KOG1028 Ca2+-dependent phospho 95.2 0.021 4.5E-07 72.4 5.4 87 1978-2064 297-391 (421)
241 PLN02222 phosphoinositide phos 95.1 0.045 9.7E-07 70.7 7.8 116 1979-2098 452-581 (581)
242 KOG1058 Vesicle coat complex C 95.1 2.4 5.3E-05 54.7 22.3 317 401-763 135-466 (948)
243 KOG1058 Vesicle coat complex C 95.0 3.8 8.3E-05 53.0 23.5 393 1234-1684 23-431 (948)
244 COG5096 Vesicle coat complex, 94.8 12 0.00026 50.3 28.4 277 1281-1596 28-311 (757)
245 COG5038 Ca2+-dependent lipid-b 94.7 0.045 9.7E-07 73.3 6.4 114 1979-2097 436-556 (1227)
246 COG5096 Vesicle coat complex, 94.6 0.8 1.7E-05 60.8 17.4 166 451-675 28-194 (757)
247 KOG0169 Phosphoinositide-speci 94.6 0.07 1.5E-06 68.9 7.5 119 1977-2100 615-746 (746)
248 KOG1240 Protein kinase contain 94.6 0.93 2E-05 61.3 17.7 289 403-718 425-724 (1431)
249 COG5231 VMA13 Vacuolar H+-ATPa 94.6 1.4 3E-05 51.2 16.8 249 451-718 158-427 (432)
250 KOG2025 Chromosome condensatio 94.4 15 0.00032 47.7 26.4 204 442-674 85-292 (892)
251 PF05004 IFRD: Interferon-rela 94.2 1.3 2.9E-05 54.0 17.1 201 8-213 42-256 (309)
252 PLN02230 phosphoinositide phos 94.2 0.064 1.4E-06 69.4 6.0 114 1978-2097 468-597 (598)
253 PF12755 Vac14_Fab1_bd: Vacuol 94.1 0.22 4.8E-06 49.1 8.4 70 1357-1427 26-95 (97)
254 KOG1031 Predicted Ca2+-depende 94.1 0.056 1.2E-06 65.5 4.9 101 1978-2079 2-118 (1169)
255 PLN02352 phospholipase D epsil 94.1 0.095 2.1E-06 69.1 7.4 99 1978-2084 9-115 (758)
256 PF12755 Vac14_Fab1_bd: Vacuol 93.9 0.28 6.1E-06 48.4 8.7 94 664-760 3-96 (97)
257 COG5116 RPN2 26S proteasome re 93.9 0.59 1.3E-05 57.8 12.8 148 405-575 521-677 (926)
258 PRK09169 hypothetical protein; 93.9 58 0.0013 48.7 45.8 219 1142-1368 160-384 (2316)
259 KOG0414 Chromosome condensatio 93.7 0.66 1.4E-05 62.7 14.0 178 607-809 921-1105(1251)
260 KOG1020 Sister chromatid cohes 93.7 47 0.001 47.2 31.5 145 401-559 817-964 (1692)
261 PF11841 DUF3361: Domain of un 93.5 1 2.2E-05 48.2 12.4 122 435-557 4-133 (160)
262 COG5116 RPN2 26S proteasome re 93.5 1 2.2E-05 55.8 13.8 153 565-746 521-677 (926)
263 PF05004 IFRD: Interferon-rela 93.1 3.5 7.7E-05 50.4 18.1 186 486-675 45-256 (309)
264 COG5231 VMA13 Vacuolar H+-ATPa 92.8 3.2 7E-05 48.4 15.8 254 408-674 157-426 (432)
265 cd08689 C2_fungal_Pkc1p C2 dom 92.8 0.16 3.5E-06 49.9 4.8 80 1982-2067 4-86 (109)
266 KOG4151 Myosin assembly protei 92.7 1.5 3.2E-05 57.6 14.5 238 434-715 496-737 (748)
267 KOG1991 Nuclear transport rece 91.7 67 0.0015 43.9 45.7 609 66-718 16-756 (1010)
268 PLN02228 Phosphoinositide phos 91.5 0.27 5.8E-06 63.6 6.1 90 1978-2068 430-533 (567)
269 PF04078 Rcd1: Cell differenti 91.4 3.3 7.2E-05 48.0 13.9 144 1292-1439 70-228 (262)
270 KOG1020 Sister chromatid cohes 91.4 89 0.0019 44.7 36.5 141 53-215 815-961 (1692)
271 PF12717 Cnd1: non-SMC mitotic 90.5 6.3 0.00014 44.1 15.3 95 455-559 1-96 (178)
272 KOG0414 Chromosome condensatio 90.5 93 0.002 43.5 39.5 515 1357-1914 540-1104(1251)
273 KOG2956 CLIP-associating prote 90.4 9.1 0.0002 47.5 16.9 186 1206-1429 284-478 (516)
274 PF11841 DUF3361: Domain of un 90.3 6.8 0.00015 42.2 14.1 116 179-304 5-127 (160)
275 KOG2025 Chromosome condensatio 90.2 5.4 0.00012 51.5 15.3 104 1316-1424 85-189 (892)
276 COG5038 Ca2+-dependent lipid-b 89.5 0.58 1.3E-05 63.3 6.7 110 1968-2079 1030-1142(1227)
277 PF02985 HEAT: HEAT repeat; I 89.5 0.39 8.5E-06 36.4 3.1 29 1401-1429 2-30 (31)
278 PF12717 Cnd1: non-SMC mitotic 89.4 18 0.00039 40.5 17.7 89 497-590 1-93 (178)
279 KOG2059 Ras GTPase-activating 89.2 0.31 6.7E-06 62.0 3.7 82 2000-2082 153-254 (800)
280 KOG2032 Uncharacterized conser 89.1 35 0.00075 43.0 20.5 144 410-555 268-415 (533)
281 KOG2032 Uncharacterized conser 88.8 6 0.00013 49.3 13.9 142 1281-1427 267-415 (533)
282 PF08569 Mo25: Mo25-like; Int 88.7 16 0.00034 45.1 17.8 203 601-808 72-285 (335)
283 PF11698 V-ATPase_H_C: V-ATPas 88.3 1.1 2.4E-05 45.6 6.2 70 401-470 44-114 (119)
284 KOG2274 Predicted importin 9 [ 88.3 34 0.00074 46.0 20.7 223 1369-1601 461-693 (1005)
285 PRK09169 hypothetical protein; 88.2 1.9E+02 0.0041 43.8 44.7 229 1144-1382 122-356 (2316)
286 PF08569 Mo25: Mo25-like; Int 87.9 32 0.00069 42.5 19.7 210 522-765 72-288 (335)
287 KOG2274 Predicted importin 9 [ 87.7 19 0.00042 48.1 18.1 200 65-273 502-705 (1005)
288 KOG3036 Protein involved in ce 87.4 21 0.00045 40.8 15.7 142 1292-1437 99-255 (293)
289 PF02985 HEAT: HEAT repeat; I 87.2 1 2.2E-05 34.2 4.0 29 607-635 2-30 (31)
290 PF08045 CDC14: Cell division 86.8 3.8 8.2E-05 47.9 10.3 98 416-513 107-207 (257)
291 PF05918 API5: Apoptosis inhib 86.8 4 8.6E-05 52.9 11.4 133 11-165 22-155 (556)
292 KOG1248 Uncharacterized conser 86.6 1.6E+02 0.0035 41.4 51.4 215 1244-1465 667-893 (1176)
293 KOG4653 Uncharacterized conser 86.6 13 0.00029 49.3 15.7 186 56-258 729-919 (982)
294 PF11701 UNC45-central: Myosin 86.4 4.1 8.9E-05 44.5 10.0 134 572-716 17-156 (157)
295 PF12719 Cnd3: Nuclear condens 86.1 15 0.00032 45.0 15.7 171 527-703 27-210 (298)
296 PF05918 API5: Apoptosis inhib 85.9 2.9 6.3E-05 54.1 9.6 125 659-804 34-160 (556)
297 PF11698 V-ATPase_H_C: V-ATPas 85.9 1.9 4.1E-05 43.9 6.3 73 604-676 42-115 (119)
298 PF12719 Cnd3: Nuclear condens 85.5 6.2 0.00013 48.3 12.1 164 567-744 34-210 (298)
299 PF08045 CDC14: Cell division 85.4 9.2 0.0002 44.8 12.5 83 201-283 107-189 (257)
300 KOG1328 Synaptic vesicle prote 85.1 0.35 7.6E-06 61.1 0.9 74 2003-2076 979-1056(1103)
301 KOG3036 Protein involved in ce 84.5 35 0.00076 39.1 15.6 136 385-522 105-255 (293)
302 KOG2059 Ras GTPase-activating 83.7 1.7 3.6E-05 55.8 5.9 99 1980-2082 6-108 (800)
303 PF13764 E3_UbLigase_R4: E3 ub 83.6 1E+02 0.0022 42.6 22.7 243 53-304 116-405 (802)
304 KOG2956 CLIP-associating prote 83.5 45 0.00097 41.8 17.4 175 456-634 301-477 (516)
305 KOG1832 HIV-1 Vpr-binding prot 83.5 28 0.00062 46.0 16.3 102 413-527 675-786 (1516)
306 PF13764 E3_UbLigase_R4: E3 ub 82.9 1.1E+02 0.0025 42.1 22.8 181 438-620 113-334 (802)
307 KOG4653 Uncharacterized conser 82.5 45 0.00097 44.7 17.8 218 492-717 735-962 (982)
308 KOG1832 HIV-1 Vpr-binding prot 82.4 1.3E+02 0.0027 40.5 21.3 161 436-644 595-782 (1516)
309 KOG1967 DNA repair/transcripti 82.4 21 0.00045 48.0 14.9 149 604-754 866-1018(1030)
310 KOG2999 Regulator of Rac1, req 81.1 40 0.00086 42.8 15.8 156 54-214 83-242 (713)
311 PF14225 MOR2-PAG1_C: Cell mor 80.6 1.3E+02 0.0029 35.8 19.9 166 497-674 75-252 (262)
312 KOG1820 Microtubule-associated 80.3 29 0.00064 47.5 16.0 176 405-590 258-444 (815)
313 PF07814 WAPL: Wings apart-lik 80.3 43 0.00094 42.1 16.8 90 362-452 25-116 (361)
314 PF07814 WAPL: Wings apart-lik 80.0 62 0.0013 40.7 18.0 93 142-237 23-116 (361)
315 KOG1967 DNA repair/transcripti 79.9 19 0.00041 48.3 13.4 150 1440-1593 866-1020(1030)
316 PF01347 Vitellogenin_N: Lipop 79.2 37 0.00081 46.4 17.3 202 6-248 392-613 (618)
317 cd08683 C2_C2cd3 C2 domain fou 79.0 2.2 4.8E-05 43.5 3.7 80 1998-2077 33-141 (143)
318 PF04063 DUF383: Domain of unk 78.8 14 0.0003 41.7 10.4 94 1316-1409 52-157 (192)
319 PF11701 UNC45-central: Myosin 78.4 5.4 0.00012 43.6 7.0 146 607-757 5-156 (157)
320 KOG1991 Nuclear transport rece 78.4 2.9E+02 0.0062 38.3 49.0 129 658-809 15-159 (1010)
321 KOG4464 Signaling protein RIC- 77.9 67 0.0014 39.4 15.9 101 158-258 112-232 (532)
322 PF04078 Rcd1: Cell differenti 77.2 1.6E+02 0.0034 34.8 18.2 200 413-644 8-227 (262)
323 PF13251 DUF4042: Domain of un 77.1 36 0.00077 38.0 12.9 108 608-719 42-174 (182)
324 PLN02964 phosphatidylserine de 76.5 1.6 3.5E-05 57.6 2.7 117 1964-2087 40-159 (644)
325 KOG1566 Conserved protein Mo25 76.4 1.8E+02 0.0039 35.0 18.6 202 600-805 74-285 (342)
326 smart00638 LPD_N Lipoprotein N 76.1 38 0.00083 45.8 15.8 200 6-246 354-567 (574)
327 KOG2999 Regulator of Rac1, req 75.2 36 0.00078 43.2 13.1 152 402-555 85-242 (713)
328 PF12530 DUF3730: Protein of u 74.1 1E+02 0.0022 36.2 16.6 133 408-556 9-152 (234)
329 PF10363 DUF2435: Protein of u 73.9 10 0.00023 37.1 6.8 71 692-763 5-75 (92)
330 COG5218 YCG1 Chromosome conden 73.8 1.3E+02 0.0028 38.7 17.4 173 442-635 91-267 (885)
331 KOG1788 Uncharacterized conser 73.6 3.6E+02 0.0078 37.1 28.1 293 166-554 665-981 (2799)
332 KOG1820 Microtubule-associated 72.9 64 0.0014 44.5 16.0 185 1482-1677 253-442 (815)
333 PF01347 Vitellogenin_N: Lipop 72.3 28 0.00061 47.6 13.3 176 1412-1618 377-569 (618)
334 COG5218 YCG1 Chromosome conden 72.1 2.8E+02 0.0061 35.9 19.6 171 1359-1554 92-264 (885)
335 KOG1243 Protein kinase [Genera 72.0 10 0.00022 49.6 7.9 224 432-674 283-513 (690)
336 PF06371 Drf_GBD: Diaphanous G 71.5 17 0.00036 41.1 9.1 109 402-512 68-186 (187)
337 PF14668 RICTOR_V: Rapamycin-i 71.1 15 0.00033 34.2 6.8 68 1288-1358 3-70 (73)
338 smart00638 LPD_N Lipoprotein N 69.6 2.3E+02 0.005 38.3 20.9 93 1569-1674 443-541 (574)
339 PF11865 DUF3385: Domain of un 66.5 42 0.00092 36.8 10.4 146 1230-1385 9-155 (160)
340 PF12530 DUF3730: Protein of u 66.5 2.7E+02 0.0058 32.7 18.1 135 487-635 3-152 (234)
341 PF10363 DUF2435: Protein of u 66.0 13 0.00027 36.5 5.5 73 1529-1602 5-77 (92)
342 PF12031 DUF3518: Domain of un 65.5 21 0.00046 40.9 7.8 87 373-459 138-233 (257)
343 PF14225 MOR2-PAG1_C: Cell mor 64.9 3E+02 0.0066 32.8 19.4 204 1364-1583 13-243 (262)
344 PF04063 DUF383: Domain of unk 64.8 32 0.00069 38.8 9.2 97 29-125 13-133 (192)
345 cd08696 C2_Dock-C C2 domains f 64.8 19 0.00042 39.9 7.3 71 2006-2079 45-129 (179)
346 KOG1243 Protein kinase [Genera 64.7 50 0.0011 43.5 11.9 221 1268-1510 289-512 (690)
347 PF08623 TIP120: TATA-binding 64.2 5.2 0.00011 43.7 2.8 105 1484-1596 30-146 (169)
348 PF14668 RICTOR_V: Rapamycin-i 63.7 25 0.00054 32.8 6.6 67 1374-1441 3-70 (73)
349 PF06371 Drf_GBD: Diaphanous G 63.0 11 0.00024 42.5 5.4 78 136-213 103-186 (187)
350 COG5209 RCD1 Uncharacterized p 61.6 79 0.0017 35.6 11.0 142 1292-1437 120-276 (315)
351 KOG1788 Uncharacterized conser 61.1 6.1E+02 0.013 35.1 25.8 249 421-675 663-981 (2799)
352 KOG1264 Phospholipase C [Lipid 60.5 7.9 0.00017 50.3 3.8 67 2012-2079 1104-1179(1267)
353 PF10358 NT-C2: N-terminal C2 60.2 21 0.00046 38.2 6.7 113 1981-2097 9-134 (143)
354 KOG2611 Neurochondrin/leucine- 59.1 1.8E+02 0.0039 36.6 14.4 132 1277-1411 16-164 (698)
355 cd08693 C2_PI3K_class_I_beta_d 58.9 10 0.00022 42.1 4.0 86 1981-2066 10-119 (173)
356 KOG0301 Phospholipase A2-activ 58.5 2.9E+02 0.0062 36.6 16.6 169 572-746 556-731 (745)
357 KOG2611 Neurochondrin/leucine- 57.2 3.6E+02 0.0079 34.1 16.4 158 601-763 52-228 (698)
358 PF15627 CEP76-C2: CEP76 C2 do 55.5 27 0.00059 37.6 6.2 117 1981-2098 11-152 (156)
359 KOG1328 Synaptic vesicle prote 55.4 7.2 0.00016 50.1 2.2 83 1999-2083 162-285 (1103)
360 cd08380 C2_PI3K_like C2 domain 54.5 18 0.00039 39.5 5.0 67 2000-2066 32-106 (156)
361 COG5098 Chromosome condensatio 53.6 67 0.0015 41.8 10.0 137 608-759 895-1036(1128)
362 PF11707 Npa1: Ribosome 60S bi 53.3 4E+02 0.0087 33.1 17.1 159 402-560 58-242 (330)
363 PF11791 Aconitase_B_N: Aconit 53.0 71 0.0015 34.0 8.5 61 1886-1961 85-147 (154)
364 KOG1992 Nuclear export recepto 52.7 7.8E+02 0.017 33.7 35.4 122 66-204 17-145 (960)
365 cd03569 VHS_Hrs_Vps27p VHS dom 52.2 92 0.002 33.4 9.7 108 9-124 3-114 (142)
366 KOG2933 Uncharacterized conser 51.9 1.5E+02 0.0032 35.6 11.7 99 607-718 131-233 (334)
367 KOG0905 Phosphoinositide 3-kin 51.5 9.8 0.00021 51.8 2.6 100 1978-2079 1523-1633(1639)
368 KOG3665 ZYG-1-like serine/thre 51.5 6.1E+02 0.013 35.0 19.5 153 382-535 494-676 (699)
369 PF06025 DUF913: Domain of Unk 50.9 6.3E+02 0.014 32.1 20.9 193 503-703 3-209 (379)
370 PF06685 DUF1186: Protein of u 50.5 1.9E+02 0.0042 34.1 12.6 79 1353-1439 68-153 (249)
371 PF13251 DUF4042: Domain of un 50.4 1.4E+02 0.0031 33.3 11.1 57 416-472 2-70 (182)
372 cd03561 VHS VHS domain family; 49.9 1.2E+02 0.0026 32.1 10.1 105 12-124 2-112 (133)
373 PF08506 Cse1: Cse1; InterPro 49.8 1.9E+02 0.004 36.6 13.4 158 1432-1592 201-370 (370)
374 PF10274 ParcG: Parkin co-regu 49.8 89 0.0019 34.8 9.2 76 1357-1432 37-113 (183)
375 COG5098 Chromosome condensatio 49.5 49 0.0011 43.0 7.9 105 1360-1469 301-414 (1128)
376 PF03130 HEAT_PBS: PBS lyase H 48.5 10 0.00022 27.7 1.3 27 1247-1283 1-27 (27)
377 KOG2137 Protein kinase [Signal 47.6 4.4E+02 0.0094 35.5 16.1 133 606-746 390-523 (700)
378 KOG1949 Uncharacterized conser 47.0 7.4E+02 0.016 33.2 17.4 182 1234-1426 177-368 (1005)
379 KOG1992 Nuclear export recepto 46.9 9.4E+02 0.02 33.0 29.6 100 1359-1473 289-394 (960)
380 PF08324 PUL: PUL domain; Int 46.6 97 0.0021 37.2 10.1 112 617-729 122-241 (268)
381 cd03568 VHS_STAM VHS domain fa 46.6 1.4E+02 0.0029 32.2 9.9 90 1335-1429 19-111 (144)
382 PF08324 PUL: PUL domain; Int 45.5 1.3E+02 0.0027 36.3 10.8 135 412-547 122-266 (268)
383 cd03567 VHS_GGA VHS domain fam 44.9 1.8E+02 0.0039 31.0 10.4 88 1337-1429 22-117 (139)
384 PF11865 DUF3385: Domain of un 43.6 1.2E+02 0.0027 33.2 9.3 34 1528-1561 11-45 (160)
385 cd03561 VHS VHS domain family; 43.1 1.9E+02 0.004 30.7 10.3 74 1356-1429 35-113 (133)
386 smart00288 VHS Domain present 41.8 1.3E+02 0.0029 31.8 8.9 106 12-124 2-111 (133)
387 KOG4464 Signaling protein RIC- 41.4 7E+02 0.015 31.2 15.3 155 1318-1472 47-230 (532)
388 PF12031 DUF3518: Domain of un 41.4 66 0.0014 37.1 6.7 83 457-540 139-230 (257)
389 PF14500 MMS19_N: Dos2-interac 41.2 3.3E+02 0.0071 32.6 13.0 218 609-852 3-234 (262)
390 PF12054 DUF3535: Domain of un 41.1 4.4E+02 0.0096 34.2 15.1 81 660-747 289-370 (441)
391 cd03567 VHS_GGA VHS domain fam 41.1 2.1E+02 0.0046 30.6 10.2 107 11-124 2-116 (139)
392 cd03568 VHS_STAM VHS domain fa 40.9 1.8E+02 0.0038 31.3 9.7 105 13-124 3-110 (144)
393 PF14500 MMS19_N: Dos2-interac 40.8 7.1E+02 0.015 29.8 15.8 212 1447-1675 5-234 (262)
394 cd08684 C2A_Tac2-N C2 domain f 40.4 25 0.00055 33.5 2.7 82 1984-2066 4-91 (103)
395 PF06025 DUF913: Domain of Unk 40.3 5.9E+02 0.013 32.3 15.8 94 444-538 108-208 (379)
396 COG5656 SXM1 Importin, protein 39.6 1.1E+03 0.025 31.9 27.2 157 1121-1283 384-553 (970)
397 PF08167 RIX1: rRNA processing 39.0 2.3E+02 0.0049 31.3 10.6 112 648-764 26-147 (165)
398 PF08506 Cse1: Cse1; InterPro 39.0 1.7E+02 0.0036 37.0 10.6 153 438-629 206-370 (370)
399 PF12416 DUF3668: Cep120 prote 37.6 64 0.0014 39.8 6.4 86 1980-2067 1-94 (340)
400 PF13983 YsaB: YsaB-like lipop 37.4 23 0.0005 31.5 1.9 20 2025-2046 57-76 (77)
401 cd03569 VHS_Hrs_Vps27p VHS dom 37.3 2.8E+02 0.006 29.8 10.5 74 1356-1429 39-115 (142)
402 KOG2933 Uncharacterized conser 37.1 1.4E+02 0.003 35.8 8.6 139 402-553 90-232 (334)
403 PF11707 Npa1: Ribosome 60S bi 36.3 9.3E+02 0.02 29.9 19.0 158 1401-1600 58-240 (330)
404 PF14631 FancD2: Fanconi anaem 36.2 1.1E+03 0.025 35.4 19.5 130 613-749 443-572 (1426)
405 PF00790 VHS: VHS domain; Int 36.0 2.4E+02 0.0052 30.1 9.9 90 1335-1429 24-119 (140)
406 KOG2038 CAATT-binding transcri 35.9 1.3E+03 0.028 31.4 25.3 91 1353-1453 299-390 (988)
407 PF08167 RIX1: rRNA processing 35.1 3.2E+02 0.0069 30.2 10.9 120 689-810 24-147 (165)
408 smart00567 EZ_HEAT E-Z type HE 35.0 37 0.0008 25.3 2.5 28 1246-1283 2-29 (30)
409 KOG1011 Neurotransmitter relea 34.9 72 0.0016 40.7 6.2 111 1980-2095 298-421 (1283)
410 PLN03076 ARF guanine nucleotid 34.8 1.2E+03 0.026 35.9 19.3 260 573-853 1150-1487(1780)
411 smart00288 VHS Domain present 34.2 2.9E+02 0.0062 29.3 10.0 74 1356-1429 35-112 (133)
412 PF12830 Nipped-B_C: Sister ch 33.8 4.9E+02 0.011 29.4 12.4 141 563-718 11-166 (187)
413 PF11864 DUF3384: Domain of un 32.8 1.2E+03 0.027 30.3 21.9 169 624-806 153-330 (464)
414 PF00790 VHS: VHS domain; Int 31.1 3.1E+02 0.0067 29.3 9.7 108 9-124 4-118 (140)
415 PF06685 DUF1186: Protein of u 31.0 9.6E+02 0.021 28.4 17.2 75 1269-1349 70-145 (249)
416 PF14429 DOCK-C2: C2 domain in 30.9 44 0.00095 37.6 3.4 61 2016-2081 65-134 (184)
417 KOG2137 Protein kinase [Signal 30.5 3.9E+02 0.0084 35.9 11.9 127 569-707 398-525 (700)
418 PF14726 RTTN_N: Rotatin, an a 30.3 2.3E+02 0.0051 28.2 7.7 54 1397-1451 28-81 (98)
419 KOG3665 ZYG-1-like serine/thre 30.1 1.7E+03 0.036 30.9 18.8 93 628-721 494-589 (699)
420 PF12830 Nipped-B_C: Sister ch 30.0 5.9E+02 0.013 28.7 12.3 125 402-537 10-141 (187)
421 PF11864 DUF3384: Domain of un 29.8 1.4E+03 0.03 29.9 18.1 82 365-452 35-117 (464)
422 smart00567 EZ_HEAT E-Z type HE 29.0 58 0.0013 24.3 2.7 28 1414-1452 2-29 (30)
423 PF11791 Aconitase_B_N: Aconit 28.9 1E+02 0.0022 33.0 5.2 45 1500-1556 79-123 (154)
424 KOG3837 Uncharacterized conser 28.6 99 0.0022 38.0 5.8 128 1968-2096 352-501 (523)
425 KOG1566 Conserved protein Mo25 27.9 1.2E+03 0.025 28.5 20.9 205 522-761 75-287 (342)
426 COG5209 RCD1 Uncharacterized p 27.3 4.6E+02 0.01 29.9 10.0 138 383-522 124-276 (315)
427 PF15573 Imm27: Immunity prote 27.3 3.8E+02 0.0083 30.4 9.4 94 27-152 28-123 (259)
428 PF10274 ParcG: Parkin co-regu 27.1 1.9E+02 0.0041 32.3 7.2 73 606-678 39-111 (183)
429 PF08216 CTNNBL: Catenin-beta- 26.9 1.2E+02 0.0026 30.6 5.1 79 1331-1416 26-104 (108)
430 KOG1949 Uncharacterized conser 26.8 1.2E+03 0.026 31.3 14.9 177 529-718 177-369 (1005)
431 cd08695 C2_Dock-B C2 domains f 26.1 94 0.002 34.9 4.8 46 2016-2064 59-111 (189)
432 PLN00094 aconitate hydratase 2 26.1 3.8E+02 0.0082 37.1 10.9 83 1886-1989 157-243 (938)
433 TIGR00117 acnB aconitate hydra 25.8 3.5E+02 0.0075 37.4 10.6 82 1887-1988 89-174 (844)
434 PF10521 DUF2454: Protein of u 25.4 3.4E+02 0.0074 32.9 10.0 31 527-557 120-150 (282)
435 PF12054 DUF3535: Domain of un 23.8 3.3E+02 0.0073 35.3 9.9 79 414-496 101-180 (441)
436 cd08397 C2_PI3K_class_III C2 d 23.4 92 0.002 34.1 4.1 65 2002-2066 36-106 (159)
437 smart00142 PI3K_C2 Phosphoinos 23.3 1.2E+02 0.0025 30.4 4.5 70 1981-2050 13-91 (100)
438 cd08694 C2_Dock-A C2 domains f 23.2 1.2E+02 0.0026 34.1 4.9 63 2002-2064 41-113 (196)
439 cd08398 C2_PI3K_class_I_alpha 22.8 87 0.0019 34.2 3.7 64 2002-2066 32-105 (158)
440 KOG1248 Uncharacterized conser 22.7 2.5E+03 0.054 30.5 56.1 220 614-853 663-896 (1176)
441 KOG0891 DNA-dependent protein 22.6 8.6E+02 0.019 38.2 14.6 264 1329-1601 493-767 (2341)
442 PF08216 CTNNBL: Catenin-beta- 22.6 77 0.0017 31.9 2.9 41 72-112 64-104 (108)
443 PF00792 PI3K_C2: Phosphoinosi 22.2 80 0.0017 33.8 3.3 64 2003-2066 9-84 (142)
444 KOG2676 Uncharacterized conser 22.2 84 0.0018 37.8 3.6 64 419-482 375-440 (478)
445 KOG1327 Copine [Signal transdu 21.9 88 0.0019 40.4 4.0 64 2004-2067 165-234 (529)
446 KOG1410 Nuclear transport rece 20.2 2E+03 0.042 29.3 14.8 144 1317-1469 6-156 (1082)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.6e-262 Score=2617.54 Aligned_cols=2096 Identities=68% Similarity=0.988 Sum_probs=2000.1
Q ss_pred CCCcchhHHHHHHHHHHHHccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhcCCHHHHHHHHHHHHh
Q 000133 1 MEDPDGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGS 80 (2100)
Q Consensus 1 ~~~~~~~~~~v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~~~~~v~~~aa~~L~~ 80 (2100)
|+||+++..+|..++++|+..++++++|+.|+..|..|++++++.|..++.+.|++|.|+.+|++++..+|.+++.+|.+
T Consensus 5 ~~~~~~~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~n 84 (2102)
T PLN03200 5 MDDPDGTLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGV 84 (2102)
T ss_pred ccCccchHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 89999999999999999999888899999999999999999999999998889999999999999999999999999999
Q ss_pred hhccchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHH
Q 000133 81 LCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVD 160 (2100)
Q Consensus 81 L~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~ 160 (2100)
++.+++++.+++..|++|+|+.+|++++.+.|+.|+.+|++|+.+...++.+..+++..|++|+|++++++++..+..++
T Consensus 85 LS~~e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~ 164 (2102)
T PLN03200 85 LCKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVE 164 (2102)
T ss_pred HhcCHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHH
Confidence 99999999999999999999999999999999999999999998543344455778899999999999999877777788
Q ss_pred HHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCC
Q 000133 161 NLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGN 240 (2100)
Q Consensus 161 ~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~ 240 (2100)
+.++.+|+|||...++.++.+++.|+||.++.+|+++++..+.+|+.+|.+++..+++.+..+++.|++|.|+++|++++
T Consensus 165 ~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~ 244 (2102)
T PLN03200 165 GLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGN 244 (2102)
T ss_pred HHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCC
Confidence 88999999999999889898999999999999999999999999999999999887778999999999999999998877
Q ss_pred CHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhcccc
Q 000133 241 EASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQS 320 (2100)
Q Consensus 241 ~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~ 320 (2100)
+..+|.+|+|+|++|+.++++++..+++.||+|.|+.++.+++++++++.....++++++|+|.|+|++....+.+|++.
T Consensus 245 ~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~l 324 (2102)
T PLN03200 245 EVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGEL 324 (2102)
T ss_pred ChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHh
Confidence 67899999999999999999999999999999999999999988998888889999999999999999999999999999
Q ss_pred ccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccc
Q 000133 321 LESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSE 400 (2100)
Q Consensus 321 ~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g 400 (2100)
+++++....+.+..|+++|+++.++++.+....+++..+.+.|++++++..+..+++++.++|+.++.|+.++..+.+.+
T Consensus 325 l~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~d 404 (2102)
T PLN03200 325 SESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAE 404 (2102)
T ss_pred hcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcc
Confidence 99999999999999999999999997666666788889999999999999888889999999999999999999999999
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHH
Q 000133 401 AKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAI 480 (2100)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i 480 (2100)
+++.|+.|+...+.++|..++++|++|+.++.+.++.+.+.|++|.|+++|++++..+|+.|+++|+|++.++++++..+
T Consensus 405 aik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aI 484 (2102)
T PLN03200 405 AKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAI 484 (2102)
T ss_pred chhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999989999999999999999999999999999999999999998888899999
Q ss_pred HhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCC
Q 000133 481 TAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTA 560 (2100)
Q Consensus 481 ~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~ 560 (2100)
.++|+||+|+++|.+++.++|+.|+|+|.|++.++++++..+.++|++|+|+++|+++++++++.|+++|.++..++++.
T Consensus 485 ieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~ 564 (2102)
T PLN03200 485 TAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA 564 (2102)
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh
Confidence 99999999999999999999999999999999987788888889999999999999999999999999999999999999
Q ss_pred cHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhH
Q 000133 561 TISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLR 640 (2100)
Q Consensus 561 ~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~ 640 (2100)
.+++++.+|.++++..+.+++++++++....+..+..+..+...+|++.|+++++++++.+++.|+|+|.+++.++++++
T Consensus 565 ~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~ 644 (2102)
T PLN03200 565 TISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLC 644 (2102)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHH
Confidence 99999999999999999999999999988887776566666678999999999999999999999999999999999999
Q ss_pred HHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcC
Q 000133 641 ESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD 720 (2100)
Q Consensus 641 ~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~ 720 (2100)
+.++..|++|+|+.+|++++.+++++++++|.+++.+..+.++..+++.|++++|++++++++.++++.|+.+|.||+.+
T Consensus 645 ~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~ 724 (2102)
T PLN03200 645 ESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSD 724 (2102)
T ss_pred HHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999877777888889999999999999999999999999999999999
Q ss_pred cHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcc-cccchHhHHH
Q 000133 721 SEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESAS-GSVATSEALD 799 (2100)
Q Consensus 721 ~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~-~~v~~~~al~ 799 (2100)
++.+.++...+++++|++++++++++.|++|+|+|.+|.++.+.++.+.++++++|++.+++++|++.+ +.+...++++
T Consensus 725 ~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~ 804 (2102)
T PLN03200 725 PEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALE 804 (2102)
T ss_pred chHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHH
Confidence 999999999999999999999999999999999999999999999889999999999999999999999 5555578999
Q ss_pred HHHHHHHcCCCCCCCCcccceeeccCCCchhhhhhhccCChhHHHHHHHHHHHHhcCCcccchhcccccccchHHHHHHH
Q 000133 800 ALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRV 879 (2100)
Q Consensus 800 ~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~g~~~~~~~~~~~~~~~~~ 879 (2100)
+|..+++.+.+.+|.+|+|...++.|.+++||++||++++|.+|++|+++|++||+|||..+|++|....+|+.|+++|+
T Consensus 805 ~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 884 (2102)
T PLN03200 805 ALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQPVVLGDLIANASKCISSLADRI 884 (2102)
T ss_pred HHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccChhHHHHHHhcccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCcceecchhhHHHHHhhhchhhHHhhhhccccchhhHHHHHHHHhhhcCCCCcCCCCChhHHHHHhhhhcccccCC
Q 000133 880 ISCTNPKVKIGGAALLICAAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAISIYRYTSEEARNG 959 (2100)
Q Consensus 880 l~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Lv~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 959 (2100)
++|+++++|+||+..+||+||.|+++++++++++++.+..|..||+|+++.... .+-....+.--.+.... --.+..
T Consensus 885 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~ 961 (2102)
T PLN03200 885 INSSSLEVKIGGTALLICAAKEHRQLVMEALDESGYLKLLIQALVDMLKQNSKK--ESLSIEIQTPRGFLESN-LFADGD 961 (2102)
T ss_pred hhcCCceEEecchhhhhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHhccCcc--cccceeecCCccchhhh-hhccCC
Confidence 999999999999999999999999999999999999999999999999987644 11000001111111110 011233
Q ss_pred CCCCCCcceecCchhHHHHHHHHhccCccchhhhhhccchhhhhhhhhhccccccccccccCchhHHHHHHHHHHhcchh
Q 000133 960 GESESSTAVIFGENLAIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQMDYKEDSSIWICALLLAILFQDRD 1039 (2100)
Q Consensus 960 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 1039 (2100)
.|..+.|.++.+.++..|++++..+++.+||+++||||++|++++|+++|.+. +|++++|++++|++++|+++||||++
T Consensus 962 ~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~k~~~~e~~~~~~~~~~~~~~~~~-~q~~~~d~~~~~~~~~ll~~lf~~~~ 1040 (2102)
T PLN03200 962 DFEVPDPATILGGTVALWLLSVIASHDAKSKLAIMEAGGIEVLTEKLASYTSN-RQAEFEDSESIWISALLLAILFQDRD 1040 (2102)
T ss_pred cccCCCCCccCcchHHHHHHHHHHcCCccchhhhhhcccHHHHHHHHHhhccC-ccccccccHHHHHHHHHHHHHcCChh
Confidence 47778899999999999999999999999999999999999999999999666 99999999999999999999999999
Q ss_pred hhhhhhhhchHHHHHHhhcchhHHhhHhHHHHHHHHHhcCCCCchhhhhccccchhhHHhhcccccchhhHHhhhHhhhh
Q 000133 1040 IIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGAAGGLISLLGCADADVQDLLDLSEEFAL 1119 (2100)
Q Consensus 1040 ~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~l 1119 (2100)
|+++++++++||.|+.++++||.+|||||||++++++|+|+|++..++||+++++|++.|+|+.++|..++++|++||+|
T Consensus 1041 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~a~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~e~~l 1120 (2102)
T PLN03200 1041 VVRAPATMRAIPSLANLLKSEETIDRYFAAQALASLVCNGSRGTLLAVANSGAVGGLISLLGCAESDISNLVALSEEFSL 1120 (2102)
T ss_pred hhcCHhHHHHhHHHHhhhhhHHHHHHHHHHHHHHHHHHcCCcchhhhhhcccccchhhhhhhhhhhhHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHhhhhhcccccCccccccHHHHHHhcCCCCCCCCchHHHHHHHHHHhhcCchhhhHHHhcCcHHHHHHHHh
Q 000133 1120 VRYPDQVALERLFRVEDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLS 1199 (2100)
Q Consensus 1120 ~~~~~~~~~~~L~~~~~~~~~~~~~~~i~~Lv~~l~~~~~~~~~~~~Al~~L~~la~~~~~~r~~i~e~G~i~~L~~~L~ 1199 (2100)
+++|++.+++.||++++++.+++.+..||.||++|++.+++++++..|++.|+.|+++++.||.+|+++|+++.|+.+++
T Consensus 1121 ~~~~~~~~le~lf~~~~ir~~~~a~~~Ip~Lv~lL~~~~~r~~~~~~AL~kLr~LA~EserNR~~maeaGAle~L~kvLS 1200 (2102)
T PLN03200 1121 VRNPDQVALERLFRVEDIRVGATARKAIPLLVDLLKPIPDRPGAPPLALGLLTQLAEGSDVNKLAMAEAGALDALTKYLS 1200 (2102)
T ss_pred cccHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cCCcchHHHHHHHHHHHhhcCHHHHhhhcccCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcchhhhhhhhhcCChHHHHH
Q 000133 1200 LGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVE 1279 (2100)
Q Consensus 1200 s~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~al~~Li~~L~~~~~~~r~~Aa~aL~~L~~~~~~~~~i~~~~~i~~Lv~ 1279 (2100)
..+.+..+.++++++++++.|++.+......+++++|+++|+.|+...|++|+.+|.+++..+++|+.+...|+||||+.
T Consensus 1201 l~~s~s~e~a~~ElL~IL~~~~e~~~~l~a~~~v~~Lv~vL~~Gs~~aR~~Aa~aL~~L~~~~~~~~~~~a~~ai~pLv~ 1280 (2102)
T PLN03200 1201 LGPQDSTEEAASELLRILFSSPELRRHESAFGAVNQLVAVLRLGSRSARYSAARALQELFSAEHIRDSELARQAVQPLVE 1280 (2102)
T ss_pred hcCccchhHHHHHHHHHHhCCHHHHHHhhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhhhhhhhccchHHHH
Confidence 98777778889999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred hhccCChhhHHHHHHHHHHhhcCCchhhHHHHhhhcchhHHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHhhcC
Q 000133 1280 ILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARC 1359 (2100)
Q Consensus 1280 lL~~~~~~~~~~A~~aL~~La~~~~~~~~~~~~v~~gal~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~~~~~~~ 1359 (2100)
+|..+....+..++.+|.++..++.+++..+.+|++++++.++++|++.++.+++..+..++.+++.+..+|......++
T Consensus 1281 ll~~~~~~~~~~a~~ALvkL~kd~is~~a~~~~~~~a~L~~l~~iL~~~~~~~l~~~l~~Lc~~l~~~~~~R~~~v~aga 1360 (2102)
T PLN03200 1281 MLNTGSESEQHAAIGALIKLSSGNPSKALAIADVEGNALENLCKILSSDSSLELKEDAAELCRVLFTNTRIRSTPAAARC 1360 (2102)
T ss_pred HhcccchhhhHHHHHHHHHHHcCCCChHhHhhcccchhHHHHHHhcccccchhHHHHHHHHhHHhcCChHHHhhHHHhCC
Confidence 99999999999999999999999988888887889999999999999988889999999999999999999999999999
Q ss_pred hHHHHHHHhcCCchHHHHHHHHHHHhcccHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCchhhHHHHh
Q 000133 1360 VEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVK 1439 (2100)
Q Consensus 1360 i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k~~i~~ 1439 (2100)
+++|+.+|.++...+.+.|+.+|..||+.++.|+.+..++++.+++..+-..+....+.|+.+|..++++.+.++.+|++
T Consensus 1361 V~~LIeLL~de~~~~~E~Al~vLd~Lc~~eegre~~~~h~a~vplV~~ilrvS~~a~E~AV~aL~kl~~~~~~v~~Emv~ 1440 (2102)
T PLN03200 1361 IEPLISLLVSESSTAQEAGVCALDRLLDDEQLAELVAAHGAVVPLVGLVVGTNYVLHEAAISALIKLGKDRPPCKLDMVK 1440 (2102)
T ss_pred HHHHHHHHhccCchHHHHHHHHHHHHhcCHhhHHHHHHcCChhhHHHHHHcCCHHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 99999999996666699999999999999999999999999988888888889999999999999999999999999999
Q ss_pred cCcHHHHHHHhccCChhHHHHHHHHHHHHHhccCCcccccccCchHHHHHHhccCCCCchhHhHHHHHHHHhhcCCCccc
Q 000133 1440 AGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRA 1519 (2100)
Q Consensus 1440 ~~~i~~lv~~L~~~~~~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~~~~~~~~~A~~~L~nL~~~~~~~~ 1519 (2100)
.|+++.++-+|...++..++.++++|+.|.+++.+.+.....++++|++..|.+++.+.+.|+.|+++|.|+.+.+++..
T Consensus 1441 ~G~~~kllllLQ~c~~~lkekAaeLLrlL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~~l~~i~e~~~~~~ 1520 (2102)
T PLN03200 1441 AGIIERVLDILPEAPDSLCSAIAELLRILTNNSSIAKGQSAAKVVEPLFLLLTRPDLGTWGQHSALQALVNILEKPQCLA 1520 (2102)
T ss_pred hCHHHHHHHHHHcCCHHHHHHHHHHHHHhccchhhccccchhhhhHHHHHHHhccCcceecHHHHHHHHHHHHhCcchhh
Confidence 99999999999988888999999999999999999888889999999999999999999999999999999999999999
Q ss_pred ccccccCCChHhhhhccCCCCHHHHHHHHHHHHHhhccccccccccccCchHHHHHHhccCCHHHHHHHHHHHHHhhcCC
Q 000133 1520 DYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTW 1599 (2100)
Q Consensus 1520 ~~~~~~~~~l~~Lv~~L~~~~~~vq~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~lL~s~~~~vr~~Al~AL~~Ls~~~ 1599 (2100)
.+++...++++||+.+|.+.++.+|+.+++.|+.+...+.+|+++...++|+||+++|+++++..|+.|++||.+.+..|
T Consensus 1521 ~~~~~~~~~i~~Li~lL~s~~~~vqe~aa~ll~~l~~~~~~~~~~~~~~aI~pLv~~l~~~~~~~~~~A~~aL~~~~~~w 1600 (2102)
T PLN03200 1521 SLTLTPSQAIEPLIPLLESPSQAVQQLAAELLSHLLAEEHFQQDITTQNAVVPLVRLAGIGILSLQQRAVKALESISLSW 1600 (2102)
T ss_pred hhhcCccchHHHHHHHHcCCcHHHHHHHHHHHHHHhcchHHhhhhhcccchHHHHHHhcCCChhHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhccChHHHHHHhcccCCCchHHHHHHHHHHHHhhhcccchhhhcccHHHHHHHhhcCCHHHHHHHHHHHHHhccC
Q 000133 1600 PNEIAKEGGVTELSKIILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSEGTVIGSLNALLVLESD 1679 (2100)
Q Consensus 1600 ~n~l~~~G~i~~Ll~lL~~~~~~~~~~l~e~a~~~L~~i~~~~~~~~~~~~v~~Lv~ll~~~~~~~~~~a~~aL~~L~~~ 1679 (2100)
|+.+.++|+|..|.+++.+.||+.+.++|+.|+.+|+|+.+++++++..-+++.|++|++++++.++..++.+|..+++.
T Consensus 1601 ~~~v~~~ggv~~l~~~~~~~d~~~~~~l~~~a~~vl~n~~~~~~~~~~~v~~~~lvkl~~s~~e~~~~~a~~~l~~~~~~ 1680 (2102)
T PLN03200 1601 PKAVADAGGIFELSKVILQADPQPPHALWESAASVLSNILRFSSEYYFEVPVAVLVKLLRSTSESTVVVALNALLVLERD 1680 (2102)
T ss_pred HHHHHHccCHHHHHHHHHccCCCCchhhHHHHHHHHHHHhccCceeEEEeeHHHHHHHHhccchhHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999998866666999999999999999999999999999999
Q ss_pred ChhhHHHHHHcccHHHHHHHHhccCcHHHHHHHHHHHhcCchhhhhhhchhhhhhhhhhccChhhHHHHHHHHHHHHhcc
Q 000133 1680 DGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNGKIRESKATKSAILPLSQYLLDPQTQAQQARLLATLALGD 1759 (2100)
Q Consensus 1680 ~~~~~~~i~~~g~i~~Li~lL~s~~~~~~a~~lL~~L~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~~~~A~~~l~~ 1759 (2100)
|.+.++.|.++|+|+.|+++|+||+|++.+.++|+.|.|+..+|+.++++..|.||.+|+.+|++..|+++.+|+.++|+
T Consensus 1681 d~~~~~~~~~~g~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1760 (2102)
T PLN03200 1681 DSSSAEQMAESGAIEALLELLRSHQCEEAAARLLEALFNNVKVREMKATKYAIAPLSQYLLDPQTRSQQARLLAALALGD 1760 (2102)
T ss_pred chhHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHhcCcchhhhhhHHHhcCcHHHHhcCcccccHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHhhhhhchHHHHHHhhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhhCCHHHHHHHhCCCCccchHHHHH
Q 000133 1760 LFQNEGLARSADAVSACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAM 1839 (2100)
Q Consensus 1760 ~~~~~~l~~~~~~~~a~~~Lv~lL~~~~~~~~~~~A~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~s~~~~~~~~aa~ 1839 (2100)
++++|++.+..+..++++.|+++|++.|+++|+..|++||.+|.++++++++.++|+|++.++++|+.|+++++..+||+
T Consensus 1761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1840 (2102)
T PLN03200 1761 LFQHEGLARSTDAVSACRALVSLLEDQPTEEMKMVAICALQNLVMHSRTNKRAVAEAGGVQVVQELLLSSNPDTSGQAAL 1840 (2102)
T ss_pred chhhhhhhhccCcHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhccchHHHHHHccchhHHHHHHcCCCccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccchhhhcchhhHHHHHHHHhhccccCCCCcHHHHHHHhhhhccCCCccccCCCccChHHHHHhhccCCHhHH
Q 000133 1840 FVKLLFSNHTIQEYASSETVRAITAAIEKELWATGTVNEEYLKALNALFNNFPRLRATEPATLSIPHLVTALKTGSEATQ 1919 (2100)
Q Consensus 1840 ~l~~L~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~c~~l~~~~~~~h~g~cs~~~tfci~~Lv~~L~~~~~~~~ 1919 (2100)
+++.||||+++|+|+|+|++|.++..+++++|.++++++++.++||.+|+.||+.+.|+.+|+|||+||+.|+.+++.+|
T Consensus 1841 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1920 (2102)
T PLN03200 1841 LIKLLFSNHTIQEYASSELIRALTAALEKDLWSTATVNEEVLRALNVLFSNFPKLRATEAATLCIPHLVGALKSGSEAAQ 1920 (2102)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHhcCccccccchHHhhHHHHHHHhccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCchhhhhHHHHHhcCcHHHHHHHHhCCchhHHHHHHHHhhcCCCceeeeeccchhhhhhCCCc
Q 000133 1920 EAALDALFLLRQAWSACPAEVSKAQSVAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPS 1999 (2100)
Q Consensus 1920 eaal~aL~tL~~~~~~~~~~~~~~~~l~~a~~i~~i~~~~~~~~~~~~~~a~~~le~i~~~~~~~~~r~~~~~~~~~~~~ 1999 (2100)
|+|||+||+|.++|..+|+|++|+|.+++|+|||.++++|+++||+|||||..++||+||+|+|||+|++|+++++|.++
T Consensus 1921 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~V~V~~a~nl~~~~~~sd 2000 (2102)
T PLN03200 1921 EAALDTLFLLRQSWSAMPAEVARAQAMAAAEAIPVLQMLMKSGPPRFHERAESLLQCLPGSLTVTIKRGNNLKQSMGNTN 2000 (2102)
T ss_pred HHHHHHHHHHHHhhccCcHHHHHHHHHHHhhhhHHHHHHHHhCCccHHHHHHHHHhhCCcceEEEEeeccccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCcccceEEEEEeeEEeecccccceee
Q 000133 2000 VYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVAGEYTL 2079 (2100)
Q Consensus 2000 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2079 (2100)
-||.+++||+++|+||||++|.||+|||+|+|+|+.||+||++||+||||++|||+++|+|+|+|++|+++|+|+|.|+|
T Consensus 2001 Pyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~kd~~G~~~i~l~~vv~~~~~~~~~~L 2080 (2102)
T PLN03200 2001 AFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGKSSLGKVTIQIDRVVMEGTYSGEYSL 2080 (2102)
T ss_pred CeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCCCCCceEEEEHHHHhcCceeeeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC-CCCCCCcceEEEEEecCC
Q 000133 2080 LPE-SKSGPSRNLEIEFLWSNK 2100 (2100)
Q Consensus 2080 ~~~-~~~~~~~~~~~~~~~~~~ 2100 (2100)
.++ +|+|++|||+|||+|+||
T Consensus 2081 ~~~~~k~G~~~~~~~e~~w~~~ 2102 (2102)
T PLN03200 2081 NPESNKDGSSRTLEIEFQWSNR 2102 (2102)
T ss_pred CcccccCCCcceEEEEEEecCC
Confidence 988 789999999999999997
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=2.2e-119 Score=1222.68 Aligned_cols=1626 Identities=25% Similarity=0.288 Sum_probs=1341.1
Q ss_pred chHHHHHHHhcC--CHHHHHHHHHHHHhhhccch-hhHHHHh-cCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCc
Q 000133 55 AVPVLVSLLRSG--SLAVKIQAATVLGSLCKENE-LRVKVLL-GGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDY 130 (2100)
Q Consensus 55 ~v~~L~~lL~~~--~~~v~~~aa~~L~~L~~~~~-~~~~i~~-~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~ 130 (2100)
.+..++.-|+++ +.+.|..++..|..+++.++ +|..+.. .|++|.|+.+|++++..++..|+.+|.+++. +.
T Consensus 14 ~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~----~e 89 (2102)
T PLN03200 14 SVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCK----EE 89 (2102)
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc----CH
Confidence 467788888877 77889999999999997665 4666664 7999999999999999999999999999998 45
Q ss_pred ccccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCC--hhhHHH-HHhcCCHHHHHHhHccCC---HHHHHH
Q 000133 131 VGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTST--EGFWAA-TVQAGGIDILVKLLTLGQ---SSTQAH 204 (2100)
Q Consensus 131 ~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~--~~~~~~-i~~~g~v~~Lv~lL~s~~---~~v~~~ 204 (2100)
.++..++..|++|+|+++|+++ +...+..+..+|.+|+... +.++.. +++.|+||.|+.++++++ ..++..
T Consensus 90 ~nk~~Iv~~GaIppLV~LL~sG---s~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~ 166 (2102)
T PLN03200 90 DLRVKVLLGGCIPPLLSLLKSG---SAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGL 166 (2102)
T ss_pred HHHHHHHHcCChHHHHHHHHCC---CHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHH
Confidence 5577788899999999999875 3558889999999999765 555533 568999999999999874 346788
Q ss_pred HHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCc
Q 000133 205 VCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSK 284 (2100)
Q Consensus 205 a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~ 284 (2100)
++.+|.+|+...+.....+++.|+++.|+++|.+++ ..++..|+++|.+++.++++.+..+++.|+||.|+.++.+.+
T Consensus 167 Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d-~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~- 244 (2102)
T PLN03200 167 LTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGN-SDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGN- 244 (2102)
T ss_pred HHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCC-
Confidence 899999999887766677789999999999999854 689999999999999877889999999999999999996532
Q ss_pred chhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCC--C----------
Q 000133 285 EFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAEST--K---------- 352 (2100)
Q Consensus 285 e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~--~---------- 352 (2100)
+..++++|+++|.|++.+.+ +.+..+.+ .|+++.++..+....... .
T Consensus 245 -------~~~VRE~AA~AL~nLAs~s~-------------e~r~~Iv~-aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~A 303 (2102)
T PLN03200 245 -------EVSVRAEAAGALEALSSQSK-------------EAKQAIAD-AGGIPALINATVAPSKEFMQGEFAQALQENA 303 (2102)
T ss_pred -------ChHHHHHHHHHHHHHhcCCH-------------HHHHHHHH-CCCHHHHHHHHhCcchhhhccccchHHHHHH
Confidence 35789999999999998532 23333333 577777776665211100 0
Q ss_pred -------CCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHH---hCCCcc-chhhhccccHHHHHHhhcCCCHH-HHHHH
Q 000133 353 -------PSDPLIVEQTLVNQFKPRLPFLVQERTIEALASL---YGNPLL-SIKLENSEAKRLLVGLITMATNE-VQEEL 420 (2100)
Q Consensus 353 -------~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L---~~~~~~-~~~l~~~g~i~~Lv~lL~~~~~~-v~~~A 420 (2100)
.-+...+++.|.+++.+..+..+...++.+++.+ ...+.. ...+....+.+.|+.+++++++. +++.+
T Consensus 304 vwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V 383 (2102)
T PLN03200 304 MGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERI 383 (2102)
T ss_pred HHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHH
Confidence 0111234444444444332322233344444444 222211 12223345568899999987655 58899
Q ss_pred HHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHH
Q 000133 421 VRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKA 500 (2100)
Q Consensus 421 ~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v 500 (2100)
..+|+.+..+ +..++.+.+.++++.|+.++...+.++|..++++|.+|+.++.+.++.+.+.|++|.|+++|.+++.++
T Consensus 384 ~eALasl~gN-~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~i 462 (2102)
T PLN03200 384 IEALASLYGN-AYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQ 462 (2102)
T ss_pred HHHHHHhcCC-hHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHH
Confidence 9999888776 677888889999999999999999999999999999999888899999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHH
Q 000133 501 KEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYV 580 (2100)
Q Consensus 501 re~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a 580 (2100)
|+.|+++|.+++..+++++..+.++|++|+|+++|.+++.++++.|+|+|+|++.+++.
T Consensus 463 Q~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~q--------------------- 521 (2102)
T PLN03200 463 QEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSED--------------------- 521 (2102)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHH---------------------
Confidence 99999999999988888999999999999999999999999999999999999874321
Q ss_pred HHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCC
Q 000133 581 LDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGS 660 (2100)
Q Consensus 581 ~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~ 660 (2100)
++..+...|++|.|+++|+++++++|+.|+++|.++..+.+. ..+++|+.+|.+.+
T Consensus 522 ----------------ir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~--------~~I~~Lv~LLlsdd 577 (2102)
T PLN03200 522 ----------------IRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA--------ATISQLTALLLGDL 577 (2102)
T ss_pred ----------------HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch--------hHHHHHHHHhcCCC
Confidence 344566778999999999999999999999999999876432 24588999999999
Q ss_pred HHHHHHHHHHHHHHhcCCch--hHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcC-cHHHHHHHHcCcHHHHH
Q 000133 661 ECILVEASRCLAAIFLSVRE--NREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD-SEVSEKAIAEEIILPAT 737 (2100)
Q Consensus 661 ~~v~~~aa~aL~~L~~~~~~--~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~-~~~~~~~v~~~~v~~L~ 737 (2100)
+.++..+..+++++...... ..+......|+++.|+++++++++++++.|+|+|++++.+ ++....++..+++++|+
T Consensus 578 ~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV 657 (2102)
T PLN03200 578 PESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCI 657 (2102)
T ss_pred hhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHH
Confidence 99999999999998653322 2333344679999999999999999999999999999955 66778889999999999
Q ss_pred HHHccCChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcccccchHhHHHHHHHHHHcCCCCCCCCcc
Q 000133 738 RVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPA 817 (2100)
Q Consensus 738 ~ll~~~~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~~~~al~~L~~L~~~~~~~~~~~~~ 817 (2100)
.++++++.+++++++|+|.+++++....+ ...+...|++++|++++++.+.++. +.++.+|.++++.++.
T Consensus 658 ~LLss~~~~v~keAA~AL~nL~~~~~~~q--~~~~v~~GaV~pL~~LL~~~d~~v~-e~Al~ALanLl~~~e~------- 727 (2102)
T PLN03200 658 KLLTNNTEAVATQSARALAALSRSIKENR--KVSYAAEDAIKPLIKLAKSSSIEVA-EQAVCALANLLSDPEV------- 727 (2102)
T ss_pred HHHhcCChHHHHHHHHHHHHHHhCCCHHH--HHHHHHcCCHHHHHHHHhCCChHHH-HHHHHHHHHHHcCchH-------
Confidence 99999999999999999999998554332 2233569999999999999888888 9999999999877765
Q ss_pred cceeeccCCCchhhhhhhccCChhHHHHHHHHHHHHhcCCcccchhcccccccchHHHHHHHhhcCCcceecchhhHHHH
Q 000133 818 WQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGAALLIC 897 (2100)
Q Consensus 818 ~~~~~~~~~~l~~L~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~g~~~~~~~~~~~~~~~~~l~s~~~~~r~~~~~~~~~ 897 (2100)
...+...+.+++|++.|++|++.+|+.|..+|.+||.
T Consensus 728 -~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~------------------------------------------ 764 (2102)
T PLN03200 728 -AAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLK------------------------------------------ 764 (2102)
T ss_pred -HHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHh------------------------------------------
Confidence 3445567889999999999999999999999999943
Q ss_pred HhhhchhhHHhhhhccccchhhHHHHHHHHhhhcCCCCcCCCCChhHHHHHhhhhcccccCCCCCCCCccee--cCchhH
Q 000133 898 AAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAISIYRYTSEEARNGGESESSTAVI--FGENLA 975 (2100)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~v~~Lv~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~--~~~~~~ 975 (2100)
+++..+++.++..+.+.+.+|+++|...+ .+...+.+++.+|+.|+|++++.+|+.++|.++ .|+++.
T Consensus 765 -----~~~~~~~~~~~~~~~g~v~~l~~~L~~~~-----~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~ 834 (2102)
T PLN03200 765 -----HFPVDDVLKDSVQCRGTVLALVDLLNSTD-----LDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLE 834 (2102)
T ss_pred -----CCChhHHHHHHHHHhCcHHHHHHHHhcCC-----cchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchH
Confidence 33445556667778999999999999877 567788999999999999999999999999999 999999
Q ss_pred HHHHHHHhccCccchhhhhhccchhhhhhhhhhccccccccccccCchhHHHHHHHHHHhcchhhhhhhhhhchHHHHHH
Q 000133 976 IWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQMDYKEDSSIWICALLLAILFQDRDIIRAHATMKAIPILAN 1055 (2100)
Q Consensus 976 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~L~~ 1055 (2100)
+++.|+..++| ..|| |+|++|++
T Consensus 835 ~l~~~l~~~~p-----------------------------------------------~~~~----------kai~il~~ 857 (2102)
T PLN03200 835 PLVRCLAEGHP-----------------------------------------------LVQD----------KAIEILSR 857 (2102)
T ss_pred HHHHHHHcCCh-----------------------------------------------HHHH----------HHHHHHHH
Confidence 99999976666 5778 99999999
Q ss_pred hhcchhHHhhHhHHHHHHHHHhcCCCCchhhhhccccc--------hhhHHhhcccccchhhHHhhhHhhhhccCCcHHH
Q 000133 1056 LLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGAA--------GGLISLLGCADADVQDLLDLSEEFALVRYPDQVA 1127 (2100)
Q Consensus 1056 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~g~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 1127 (2100)
+|+|+ ++++|.....+++++.++|+++++ ||++.|+|+++.+.+..
T Consensus 858 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 911 (2102)
T PLN03200 858 LCRDQ---------PVVLGDLIANASKCISSLADRIINSSSLEVKIGGTALLICAAKEHRQLV----------------- 911 (2102)
T ss_pred HhccC---------hhHHHHHHhcccchHHHHHHHHhhcCCceEEecchhhhhhhhhhhHHHH-----------------
Confidence 99999 999999999999999999999987 99999999999999887
Q ss_pred HHhhhhhcccccCccccccHHHHHHhcCC--------------------------------CCCCCCchHHHHHHHHHHh
Q 000133 1128 LERLFRVEDIRVGATSRKAIPALVDLLKP--------------------------------IPDRPGAPFLALGFLIQLA 1175 (2100)
Q Consensus 1128 ~~~L~~~~~~~~~~~~~~~i~~Lv~~l~~--------------------------------~~~~~~~~~~Al~~L~~la 1175 (2100)
++.+..++..+..|.+||+|++. +|+++++++.|+|+|+.|+
T Consensus 912 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ll~~~~ 985 (2102)
T PLN03200 912 ------MEALDESGYLKLLIQALVDMLKQNSKKESLSIEIQTPRGFLESNLFADGDDFEVPDPATILGGTVALWLLSVIA 985 (2102)
T ss_pred ------HHHHHhhccHHHHHHHHHHHHhccCcccccceeecCCccchhhhhhccCCcccCCCCCccCcchHHHHHHHHHH
Confidence 77778889999999999999972 3778999999999999999
Q ss_pred hcCchhhhHHHhcCcHHHHHH----HHhcCCc----chHHHHHHH-HHHHhhcCHHHHhhhcccCcHHHHHHHHhcCCHH
Q 000133 1176 KDCPSNKIVMVEAGALEALTK----YLSLGPQ----DATEEAATD-LLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRG 1246 (2100)
Q Consensus 1176 ~~~~~~r~~i~e~G~i~~L~~----~L~s~~~----~~~~~~~~~-ll~~l~~~~~~~~~~~~~~al~~Li~~L~~~~~~ 1246 (2100)
++++.||..|+|+|++++|.+ |++. ++ |..+.++.+ +|++||+|++++++....+++|.|..+|++++..
T Consensus 986 ~~~~~~k~~~~e~~~~~~~~~~~~~~~~~-~q~~~~d~~~~~~~~~ll~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1064 (2102)
T PLN03200 986 SHDAKSKLAIMEAGGIEVLTEKLASYTSN-RQAEFEDSESIWISALLLAILFQDRDVVRAPATMRAIPSLANLLKSEETI 1064 (2102)
T ss_pred cCCccchhhhhhcccHHHHHHHHHhhccC-ccccccccHHHHHHHHHHHHHcCChhhhcCHhHHHHhHHHHhhhhhHHHH
Confidence 999999999999999999999 5544 44 667778877 9999999999999999999999999999999888
Q ss_pred HHHHHHHH--------------------------------------------------------HHHhhcchhhhhhhhh
Q 000133 1247 ARYSAAKA--------------------------------------------------------LESLFSADHIRNAESA 1270 (2100)
Q Consensus 1247 ~r~~Aa~a--------------------------------------------------------L~~L~~~~~~~~~i~~ 1270 (2100)
+||+||++ |.+||+.+++|.....
T Consensus 1065 ~~~~~~q~~a~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~e~~l~~~~~~~~le~lf~~~~ir~~~~a 1144 (2102)
T PLN03200 1065 DRYFAAQALASLVCNGSRGTLLAVANSGAVGGLISLLGCAESDISNLVALSEEFSLVRNPDQVALERLFRVEDIRVGATA 1144 (2102)
T ss_pred HHHHHHHHHHHHHHcCCcchhhhhhcccccchhhhhhhhhhhhHHHHHHHHHHhhccccHHHHHHHHHhhhhhhcchHHH
Confidence 99999887 5566777888888888
Q ss_pred cCChHHHHHhhccCCh--hhHHHHHHHHHHhhcCCchhhHHHHhhhcchhHHHHHHHhhcCChhhHHHHHHHHHHHhcCc
Q 000133 1271 RQAVQPLVEILNTGLE--REQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNT 1348 (2100)
Q Consensus 1271 ~~~i~~Lv~lL~~~~~--~~~~~A~~aL~~La~~~~~~~~~~~~v~~gal~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~ 1348 (2100)
+++||+||++|++.++ ..+..|+..|..++.+++.++..|+ +.|+++.|.++++..........+..+|..++.++
T Consensus 1145 ~~~Ip~Lv~lL~~~~~r~~~~~~AL~kLr~LA~EserNR~~ma--eaGAle~L~kvLSl~~s~s~e~a~~ElL~IL~~~~ 1222 (2102)
T PLN03200 1145 RKAIPLLVDLLKPIPDRPGAPPLALGLLTQLAEGSDVNKLAMA--EAGALDALTKYLSLGPQDSTEEAASELLRILFSSP 1222 (2102)
T ss_pred HHHHHHHHHHhccccccccchHHHHHHHHHHHhcCHHHHHHHH--HcCCHHHHHHHHHhcCccchhHHHHHHHHHHhCCH
Confidence 9999999999998876 4488899999999988877666664 88999999999987655566778889999999999
Q ss_pred chHHHHHhhcChHHHHHHHhcCCchHHHHHHHHHHHhcccHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhc
Q 000133 1349 RIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGK 1428 (2100)
Q Consensus 1349 ~~r~~~~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~ 1428 (2100)
+.+......+++++|+.+|++++...|.+|+.+|.+++..+.++......|+|++|+.++.++....++.++.+|.++.+
T Consensus 1223 e~~~~l~a~~~v~~Lv~vL~~Gs~~aR~~Aa~aL~~L~~~~~~~~~~~a~~ai~pLv~ll~~~~~~~~~~a~~ALvkL~k 1302 (2102)
T PLN03200 1223 ELRRHESAFGAVNQLVAVLRLGSRSARYSAARALQELFSAEHIRDSELARQAVQPLVEMLNTGSESEQHAAIGALIKLSS 1302 (2102)
T ss_pred HHHHHhhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhhhhhhhccchHHHHHhcccchhhhHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred CCchhhHHH--HhcCcHHHHHHHhccC-ChhHHHHHHHHHHHHHhccCCcccccccCchHHHHHHhccCCCCchhHhHHH
Q 000133 1429 DRPSCKLEM--VKAGVIESVLDILHEA-PDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSAL 1505 (2100)
Q Consensus 1429 ~~~~~k~~i--~~~~~i~~lv~~L~~~-~~~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~~~~~~~~~A~ 1505 (2100)
++...+..+ ++.+.+..++++|.+. +.+.+..++++|+.|++++.++..
T Consensus 1303 d~is~~a~~~~~~~a~L~~l~~iL~~~~~~~l~~~l~~Lc~~l~~~~~~R~~---------------------------- 1354 (2102)
T PLN03200 1303 GNPSKALAIADVEGNALENLCKILSSDSSLELKEDAAELCRVLFTNTRIRST---------------------------- 1354 (2102)
T ss_pred CCCChHhHhhcccchhHHHHHHhcccccchhHHHHHHHHhHHhcCChHHHhh----------------------------
Confidence 987777777 7899999999999876 556677677777555444443311
Q ss_pred HHHHHhhcCCCcccccccccCCChHhhhhccCCCCHHHHHHHHHHHHHhhccccccccccccCchHHHHHHhccCCHHHH
Q 000133 1506 QVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQ 1585 (2100)
Q Consensus 1506 ~~L~nL~~~~~~~~~~~~~~~~~l~~Lv~~L~~~~~~vq~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~lL~s~~~~vr 1585 (2100)
+...|.+++||.+|.++...+++.|+.+|.+|...++.++.+..++++-|++.++-..++...
T Consensus 1355 -----------------~v~agaV~~LIeLL~de~~~~~E~Al~vLd~Lc~~eegre~~~~h~a~vplV~~ilrvS~~a~ 1417 (2102)
T PLN03200 1355 -----------------PAAARCIEPLISLLVSESSTAQEAGVCALDRLLDDEQLAELVAAHGAVVPLVGLVVGTNYVLH 1417 (2102)
T ss_pred -----------------HHHhCCHHHHHHHHhccCchHHHHHHHHHHHHhcCHhhHHHHHHcCChhhHHHHHHcCCHHHH
Confidence 245567777777777766677899999999999999999999999999888888888899999
Q ss_pred HHHHHHHHHhhcCChh---HHHhccChHHHHHHhcccCCCchHHHHHHHHHHHHhhhcccchh-----hhcccHHHHHHH
Q 000133 1586 QRAVKALVSIALTWPN---EIAKEGGVTELSKIILQADPSLPHALWESAASVLSSILQFSSEF-----YLEVPVAVLVRL 1657 (2100)
Q Consensus 1586 ~~Al~AL~~Ls~~~~n---~l~~~G~i~~Ll~lL~~~~~~~~~~l~e~a~~~L~~i~~~~~~~-----~~~~~v~~Lv~l 1657 (2100)
+.|+++|.++++.+++ .|++.|+++.++-+|.. .+..+|+.|+.+|.-+.. +..+ ..+-+.|.|+.|
T Consensus 1418 E~AV~aL~kl~~~~~~v~~Emv~~G~~~kllllLQ~----c~~~lkekAaeLLrlL~~-~~~~~~~~~~~~~~~~~~~~l 1492 (2102)
T PLN03200 1418 EAAISALIKLGKDRPPCKLDMVKAGIIERVLDILPE----APDSLCSAIAELLRILTN-NSSIAKGQSAAKVVEPLFLLL 1492 (2102)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHhCHHHHHHHHHHc----CCHHHHHHHHHHHHHhcc-chhhccccchhhhhHHHHHHH
Confidence 9999999999988888 38899999999999987 456778877777533332 2222 223355667777
Q ss_pred hhcCC-HHHHHHHHHHHH-HhccCChhhHHHHHHcccHHHHHHHHhcc--CcHHHHHHHHHHHhcCchhhhhhhchhhhh
Q 000133 1658 LRSGS-EGTVIGSLNALL-VLESDDGTSAEAMAESGAIEALLELLRSH--QCEETAARLLEVLLNNGKIRESKATKSAIL 1733 (2100)
Q Consensus 1658 l~~~~-~~~~~~a~~aL~-~L~~~~~~~~~~i~~~g~i~~Li~lL~s~--~~~~~a~~lL~~L~~~~~~~~~~~~~~~i~ 1733 (2100)
++++. ..-+..|+++|. .+++++......+..++++++|+.+|+|+ .+|+.++++|++|..++.||+.++++++|.
T Consensus 1493 ~~~~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~i~~Li~lL~s~~~~vqe~aa~ll~~l~~~~~~~~~~~~~~aI~ 1572 (2102)
T PLN03200 1493 TRPDLGTWGQHSALQALVNILEKPQCLASLTLTPSQAIEPLIPLLESPSQAVQQLAAELLSHLLAEEHFQQDITTQNAVV 1572 (2102)
T ss_pred hccCcceecHHHHHHHHHHHHhCcchhhhhhcCccchHHHHHHHHcCCcHHHHHHHHHHHHHHhcchHHhhhhhcccchH
Confidence 76553 356677888888 67888888899999999999999999997 689999999999999999999999999999
Q ss_pred hhhhhccChhhHHHHHHHHHHHHhcchhhhh-----hHHHhhhhh--------------------------------chH
Q 000133 1734 PLSQYLLDPQTQAQQARLLATLALGDLFQNE-----GLARSADAV--------------------------------SAC 1776 (2100)
Q Consensus 1734 ~L~~~l~~~~~~~~~~~~~A~~~l~~~~~~~-----~l~~~~~~~--------------------------------~a~ 1776 (2100)
||++++.++....++.++.|++..++.|++. ++++.++.. -.+
T Consensus 1573 pLv~~l~~~~~~~~~~A~~aL~~~~~~w~~~v~~~ggv~~l~~~~~~~d~~~~~~l~~~a~~vl~n~~~~~~~~~~~v~~ 1652 (2102)
T PLN03200 1573 PLVRLAGIGILSLQQRAVKALESISLSWPKAVADAGGIFELSKVILQADPQPPHALWESAASVLSNILRFSSEYYFEVPV 1652 (2102)
T ss_pred HHHHHhcCCChhHHHHHHHHHHHhhcccHHHHHHccCHHHHHHHHHccCCCCchhhHHHHHHHHHHHhccCceeEEEeeH
Confidence 9999999999999999999999999999766 343322110 146
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhhCCHHHHHHHhCCCCccchHHHHHHHHHHhcccchhhhcch
Q 000133 1777 RALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFVKLLFSNHTIQEYASS 1856 (2100)
Q Consensus 1777 ~~Lv~lL~~~~~~~~~~~A~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~s~~~~~~~~aa~~l~~L~s~~~~~~~~~~ 1856 (2100)
+.|++++++. ++..+.+|+.+|..+...|...++.|++.|+|+.|+++|+||.++.. +|.+|+.|++|..+|+.-..
T Consensus 1653 ~~lvkl~~s~-~e~~~~~a~~~l~~~~~~d~~~~~~~~~~g~i~~l~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 1729 (2102)
T PLN03200 1653 AVLVKLLRST-SESTVVVALNALLVLERDDSSSAEQMAESGAIEALLELLRSHQCEEA--AARLLEALFNNVKVREMKAT 1729 (2102)
T ss_pred HHHHHHHhcc-chhHHHHHHHHHHHHHhcchhHHHHHHHhhhHHHHHHHHHhccchhH--HHHHHHHHhcCcchhhhhhH
Confidence 6788888875 88899999999999998999999999999999999999999999965 99999999999887554322
Q ss_pred hh-HHHHHHHHhhccccCCCCcH---HHHHHH--hhhhccCCCccccCCCcc-ChHHHHHhhccC-CHhHHHHHHHHHHH
Q 000133 1857 ET-VRAITAAIEKELWATGTVNE---EYLKAL--NALFNNFPRLRATEPATL-SIPHLVTALKTG-SEATQEAALDALFL 1928 (2100)
Q Consensus 1857 ~~-~~~~~~l~~~~~~~~~~~~~---~~c~~l--~~~~~~~h~g~cs~~~tf-ci~~Lv~~L~~~-~~~~~eaal~aL~t 1928 (2100)
.+ +.|+ .+-+.+. ..+. .....| +.+|. |.|.+-..... --..||..||+. .++..--|+-||-+
T Consensus 1730 ~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1802 (2102)
T PLN03200 1730 KYAIAPL----SQYLLDP-QTRSQQARLLAALALGDLFQ--HEGLARSTDAVSACRALVSLLEDQPTEEMKMVAICALQN 1802 (2102)
T ss_pred HHhcCcH----HHHhcCc-ccccHHHHHHHHHHhccchh--hhhhhhccCcHHHHHHHHHHhccCchHHHHHHHHHHHHH
Confidence 11 1111 2222233 2222 233333 77766 67666422222 257899999987 57888899999999
Q ss_pred HHHHHhcCCchhhhhHHHHHhcCcHHHHHHHHhCCchhHHHHHHHHhhc
Q 000133 1929 LRQAWSACPAEVSKAQSVAAADAIPLLQYLIQSGPPRFQEKAEFLLQCL 1977 (2100)
Q Consensus 1929 L~~~~~~~~~~~~~~~~l~~a~~i~~i~~~~~~~~~~~~~~a~~~le~i 1977 (2100)
|+|..... =++++||+||..++.++.+.+|..--.|-.++.-+
T Consensus 1803 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1845 (2102)
T PLN03200 1803 LVMHSRTN------KRAVAEAGGVQVVQELLLSSNPDTSGQAALLIKLL 1845 (2102)
T ss_pred HHHhccch------HHHHHHccchhHHHHHHcCCCccHHHHHHHHHHHH
Confidence 99955444 49999999999999999998777666666666655
No 3
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=9e-36 Score=326.99 Aligned_cols=417 Identities=18% Similarity=0.200 Sum_probs=369.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHh-hccCccchHHHHhCCcHHHHHHhhC-CCCHHHHHHHHHHHHHhccCCcccHHH
Q 000133 402 KRLLVGLITMATNEVQEELVRALLKL-CNNEGSLWRALQGREGIQLLISLLG-LSSEQQQECSVALLCLLSNENDDSKWA 479 (2100)
Q Consensus 402 i~~Lv~lL~~~~~~v~~~A~~aL~~L-~~~~~~~~~~i~~~g~i~~Lv~lL~-s~~~~v~~~A~~aL~nLs~~~~~~~~~ 479 (2100)
+|.|..-+-+.|-+.|..|..-++.+ +.......+.++++|.+|.++++++ ....-.+.+|+|+|.|++++.......
T Consensus 73 lp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkv 152 (526)
T COG5064 73 LPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKV 152 (526)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEE
Confidence 46666777788888888888888874 5444556788899999999999995 556677899999999999998888999
Q ss_pred HHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCCh--hHHHHHHHHHHHHhcCC
Q 000133 480 ITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSA--NGKEIAAKTLNHLIHKS 557 (2100)
Q Consensus 480 i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~--~~~~~Aa~aL~~L~~~~ 557 (2100)
++++|++|.++++|.+++.+++++++|+|+|++.+++.+|+.+...|++.+++.++.++.. ...+.+.|+|.|||+..
T Consensus 153 Vvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGk 232 (526)
T COG5064 153 VVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGK 232 (526)
T ss_pred EEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCC
Confidence 9999999999999999999999999999999999999999999999999999999998766 67899999999999866
Q ss_pred CCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCh
Q 000133 558 DTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRK 637 (2100)
Q Consensus 558 ~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~ 637 (2100)
.|. .++.. + ..++|.|.+++.+.++++--.|+|++.+|+.++.
T Consensus 233 nP~-----------P~w~~--------------------i------sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~ 275 (526)
T COG5064 233 NPP-----------PDWSN--------------------I------SQALPILAKLIYSRDPEVLVDACWAISYLSDGPN 275 (526)
T ss_pred CCC-----------CchHH--------------------H------HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcH
Confidence 541 11111 1 1248999999999999999999999999999999
Q ss_pred hhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHH
Q 000133 638 DLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANL 717 (2100)
Q Consensus 638 ~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L 717 (2100)
+..+++...|..+.|+.+|.+++..++..+.+.++|+..+. +.+...++.+|+++.+..+|.++...+|.+|||++.|+
T Consensus 276 E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~-D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNI 354 (526)
T COG5064 276 EKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGS-DDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNI 354 (526)
T ss_pred HHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecC-ccceehheecccHHHHHHHhcChhhhhhhhhheeeccc
Confidence 99999999999999999999999999999999999998775 46777799999999999999999999999999999999
Q ss_pred hcC-cHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcccccchHh
Q 000133 718 ILD-SEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSE 796 (2100)
Q Consensus 718 ~~~-~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~~~~ 796 (2100)
..+ .++.+.+++.+++|+|+.++.+.+-.++.+|.||+.+...+.-...++..++...|++++|+++|...+..+. +.
T Consensus 355 TAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkii-ev 433 (526)
T COG5064 355 TAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKII-EV 433 (526)
T ss_pred ccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccch-hh
Confidence 976 5667777899999999999999999999999999999999888888899999999999999999999999888 89
Q ss_pred HHHHHHHHHHcCCCCC--CCC--cccceeeccCCCchhhhhhhccCChhHHHHHHHHHHHHhcCC
Q 000133 797 ALDALAILSRSGGASG--HVK--PAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQ 857 (2100)
Q Consensus 797 al~~L~~L~~~~~~~~--~~~--~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~a~~~L~~L~~~~ 857 (2100)
+++++.+.++.++..+ +.+ +.+...++.+++++.+..|+..+|..++++|..|++.+|++.
T Consensus 434 ~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFgee 498 (526)
T COG5064 434 ALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEE 498 (526)
T ss_pred hHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHcccc
Confidence 9999999999887422 222 245678888999999999999999999999999999998654
No 4
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.8e-35 Score=352.37 Aligned_cols=415 Identities=20% Similarity=0.230 Sum_probs=367.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhccCc-cchHHHHhCCcHHHHHHhhC-CCCHHHHHHHHHHHHHhccCCcccHHH
Q 000133 402 KRLLVGLITMATNEVQEELVRALLKLCNNEG-SLWRALQGREGIQLLISLLG-LSSEQQQECSVALLCLLSNENDDSKWA 479 (2100)
Q Consensus 402 i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~-s~~~~v~~~A~~aL~nLs~~~~~~~~~ 479 (2100)
.+.++..+.+.++..+..+...++.+-+... .....++..|.+|.+|.++. +.++.+|.+|+|+|.|++++..+....
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 5567778888899889999999998765433 33455666799999999997 556999999999999999999999999
Q ss_pred HHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCCh-hHHHHHHHHHHHHhcCCC
Q 000133 480 ITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSA-NGKEIAAKTLNHLIHKSD 558 (2100)
Q Consensus 480 i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~Aa~aL~~L~~~~~ 558 (2100)
++++|++|.+++++.+++.+++++|+|+|+|++.+++.+|..+.+.|++++|+.++...++ ...+.+.|+|.|||++.+
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999999998776 788999999999999775
Q ss_pred CCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChh
Q 000133 559 TATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKD 638 (2100)
Q Consensus 559 ~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~ 638 (2100)
|. |.. +.+ ..++|.|..++.+.++++...|+|+|.+|+.+..+
T Consensus 228 P~-------------P~~------------------~~v------~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne 270 (514)
T KOG0166|consen 228 PS-------------PPF------------------DVV------APILPALLRLLHSTDEEVLTDACWALSYLTDGSNE 270 (514)
T ss_pred CC-------------CcH------------------HHH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChH
Confidence 41 110 001 12489999999999999999999999999999999
Q ss_pred hHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhC-CCCHHHHHHHHHHHHHH
Q 000133 639 LRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAG-SPVLEVAEQATCALANL 717 (2100)
Q Consensus 639 ~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~-~~~~evr~~aa~aL~~L 717 (2100)
..+.+++.|++|.|+.+|.+.+..++..|+++++|++.+. +.++..++..|+++.|..++. ++...+|++|+|++.|+
T Consensus 271 ~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~-d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNI 349 (514)
T KOG0166|consen 271 KIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGS-DEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNI 349 (514)
T ss_pred HHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeecc-HHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999997775 578888999999999999999 56666999999999999
Q ss_pred hcC-cHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcccccchHh
Q 000133 718 ILD-SEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSE 796 (2100)
Q Consensus 718 ~~~-~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~~~~ 796 (2100)
..+ .++...+++.+++|.|+.+++..+.++|.+|+||+.|+..+.. .....|++..|++++++++|...+..+. ..
T Consensus 350 tAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~--~~qi~yLv~~giI~plcdlL~~~D~~ii-~v 426 (514)
T KOG0166|consen 350 TAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT--PEQIKYLVEQGIIKPLCDLLTCPDVKII-LV 426 (514)
T ss_pred hcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC--HHHHHHHHHcCCchhhhhcccCCChHHH-HH
Confidence 977 5577788899999999999999999999999999999997666 5678889999999999999988888886 99
Q ss_pred HHHHHHHHHHcCCCCCC-CCcccceeeccCCCchhhhhhhccCChhHHHHHHHHHHHHhcCC
Q 000133 797 ALDALAILSRSGGASGH-VKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQ 857 (2100)
Q Consensus 797 al~~L~~L~~~~~~~~~-~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~a~~~L~~L~~~~ 857 (2100)
++++|.++++..+.... ..+++...++..++++++..+..++|..++++|..|+.+||+++
T Consensus 427 ~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e 488 (514)
T KOG0166|consen 427 ALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEE 488 (514)
T ss_pred HHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCC
Confidence 99999999988876221 11788999999999999999999999999999999999998765
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.4e-29 Score=280.80 Aligned_cols=442 Identities=19% Similarity=0.214 Sum_probs=362.7
Q ss_pred HHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHh
Q 000133 91 VLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNL 170 (2100)
Q Consensus 91 i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL 170 (2100)
+-.++-+..+.-+--+++.+.+..|+-+...+...+. + -+......+++.++++ +++.++..+..+++|+
T Consensus 43 fyS~~plraltvL~ySDnlnlqrsaalafAeitek~v-----r--~Vsres~epvl~llqs---~d~~Iq~aa~~alGnl 112 (550)
T KOG4224|consen 43 FYSASPLRALTVLKYSDNLNLQRSAALAFAEITEKGV-----R--RVSRESNEPVLALLQS---CDKCIQCAAGEALGNL 112 (550)
T ss_pred ccCCCccchheeeeeccccccchHHHHHHHHHHHHHH-----H--HhhhhhhhHHHHHHhC---cchhhhhhhhhhhccc
Confidence 3344446666655567778877777777777766211 1 1233456667777776 5667888899999999
Q ss_pred ccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHH
Q 000133 171 STSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAG 250 (2100)
Q Consensus 171 ~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~ 250 (2100)
+... +++..|++.+|++.|+.-+-++..++|.++.+++++|+..+. ++.++...|++.++.+ |....|..+|+++.+
T Consensus 113 AVn~-enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~-nk~kiA~sGaL~pltr-Lakskdirvqrnatg 189 (550)
T KOG4224|consen 113 AVNM-ENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDS-NKVKIARSGALEPLTR-LAKSKDIRVQRNATG 189 (550)
T ss_pred eecc-CCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhcccc-chhhhhhccchhhhHh-hcccchhhHHHHHHH
Confidence 9655 555668899999999998889999999999999999998754 8899999999999999 455566789999999
Q ss_pred HHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhh
Q 000133 251 ALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQV 330 (2100)
Q Consensus 251 aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~ 330 (2100)
+|.|++. +.++|+.++.+||+|.|+.++.+.+ .++|++++.++.|+..+
T Consensus 190 aLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d---------~dvqyycttaisnIaVd--------------------- 238 (550)
T KOG4224|consen 190 ALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGD---------LDVQYYCTTAISNIAVD--------------------- 238 (550)
T ss_pred HHHHhhh-hhhhhhhhhccCCchhhhhhhccCC---------hhHHHHHHHHhhhhhhh---------------------
Confidence 9999997 8899999999999999999998765 78889999988887742
Q ss_pred hhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccc--cHHHHHHh
Q 000133 331 ADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSE--AKRLLVGL 408 (2100)
Q Consensus 331 ~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g--~i~~Lv~l 408 (2100)
...++.+.+.+ .++.|+.+
T Consensus 239 -----------------------------------------------------------~~~Rk~Laqaep~lv~~Lv~L 259 (550)
T KOG4224|consen 239 -----------------------------------------------------------RRARKILAQAEPKLVPALVDL 259 (550)
T ss_pred -----------------------------------------------------------HHHHHHHHhcccchHHHHHHH
Confidence 11122333334 78899999
Q ss_pred hcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHH
Q 000133 409 ITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPP 488 (2100)
Q Consensus 409 L~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~ 488 (2100)
+++++++++..|..+|+||+.+ ..|+..|+++|++|.++++++++.-....+.+.+++|++- ++.+...|.++|.+.+
T Consensus 260 md~~s~kvkcqA~lALrnlasd-t~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisi-hplNe~lI~dagfl~p 337 (550)
T KOG4224|consen 260 MDDGSDKVKCQAGLALRNLASD-TEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISI-HPLNEVLIADAGFLRP 337 (550)
T ss_pred HhCCChHHHHHHHHHHhhhccc-chhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccc-ccCcccceecccchhH
Confidence 9999999999999999999998 6788899999999999999999988888889999999995 8999999999999999
Q ss_pred HHHhccCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHH
Q 000133 489 LVQILESG-SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTA 567 (2100)
Q Consensus 489 Lv~lL~~~-~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~ 567 (2100)
|+.+|+-+ ++++|-+|..+|+||+..++.++..|.+.|++|.|..++.++.-.++.....++..|+...+.
T Consensus 338 LVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~-------- 409 (550)
T KOG4224|consen 338 LVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDND-------- 409 (550)
T ss_pred HHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcccc--------
Confidence 99999977 667999999999999998889999999999999999999999999999888888888764322
Q ss_pred HhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--
Q 000133 568 LLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIA-- 645 (2100)
Q Consensus 568 lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~-- 645 (2100)
+..+-+.|.+|.|+.++.+.+.+++-+|+.+|.|++.+-+++. .+.+
T Consensus 410 ------------------------------k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~Ya-rviEaw 458 (550)
T KOG4224|consen 410 ------------------------------KEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYA-RVIEAW 458 (550)
T ss_pred ------------------------------HHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHH-HHHHHh
Confidence 2234456779999999999999999999999999998755432 2222
Q ss_pred ----cCchHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 000133 646 ----VKTLWSVMKLLDVGSECILVEASRCLAAIFL 676 (2100)
Q Consensus 646 ----~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~ 676 (2100)
.|+=..|++.+.++......-+.+++..|..
T Consensus 459 d~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle 493 (550)
T KOG4224|consen 459 DHPVQGIQGRLARFLASHELTFRHIARWTIQQLLE 493 (550)
T ss_pred cCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 2556678888888877778888888887743
No 6
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.3e-28 Score=270.07 Aligned_cols=442 Identities=21% Similarity=0.228 Sum_probs=361.0
Q ss_pred hhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHH
Q 000133 224 LAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCAL 303 (2100)
Q Consensus 224 ~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL 303 (2100)
...+-++.+--+--+++ .+.+..|+-+...+... ..+ -+....+.++..++++.+ ..+|..+..++
T Consensus 44 yS~~plraltvL~ySDn-lnlqrsaalafAeitek--~vr--~Vsres~epvl~llqs~d---------~~Iq~aa~~al 109 (550)
T KOG4224|consen 44 YSASPLRALTVLKYSDN-LNLQRSAALAFAEITEK--GVR--RVSRESNEPVLALLQSCD---------KCIQCAAGEAL 109 (550)
T ss_pred cCCCccchheeeeeccc-cccchHHHHHHHHHHHH--HHH--HhhhhhhhHHHHHHhCcc---------hhhhhhhhhhh
Confidence 33444555544433433 56778887777666542 111 133456777788887764 67888999999
Q ss_pred HHhhCC--CcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHH
Q 000133 304 ANISGG--LSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIE 381 (2100)
Q Consensus 304 ~nl~~~--~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~ 381 (2100)
.|++.. ++.+|..|+ +..+++.+.+..+.. +|..+..
T Consensus 110 GnlAVn~enk~liv~l~---------------------------------------Gl~~Li~qmmtd~ve--vqcnaVg 148 (550)
T KOG4224|consen 110 GNLAVNMENKGLIVSLL---------------------------------------GLDLLILQMMTDGVE--VQCNAVG 148 (550)
T ss_pred ccceeccCCceEEEecc---------------------------------------ChHHHHHHhcCCCcE--EEeeehh
Confidence 998873 344444432 223333344433333 6889999
Q ss_pred HHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHH
Q 000133 382 ALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQEC 461 (2100)
Q Consensus 382 aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~ 461 (2100)
|+.+|+..++++..+...|++.++.++-++++..+|+++..+|.|+... .++++.++.+|++|.|+.++++.+.++|++
T Consensus 149 CitnLaT~d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs-~EnRr~LV~aG~lpvLVsll~s~d~dvqyy 227 (550)
T KOG4224|consen 149 CITNLATFDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHS-RENRRVLVHAGGLPVLVSLLKSGDLDVQYY 227 (550)
T ss_pred hhhhhhccccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhh-hhhhhhhhccCCchhhhhhhccCChhHHHH
Confidence 9999988899999999999999999988999999999999999999988 567888999999999999999999999999
Q ss_pred HHHHHHHhccCCcccHHHHHhcC--ChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCC
Q 000133 462 SVALLCLLSNENDDSKWAITAAG--GIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGS 539 (2100)
Q Consensus 462 A~~aL~nLs~~~~~~~~~i~~~g--~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~ 539 (2100)
++.+++|++- ....++.+.+.+ .+|.|++++.+++++++-+|..+|.||+.+ .+++..|+++|.+|.++++++++.
T Consensus 228 cttaisnIaV-d~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasd-t~Yq~eiv~ag~lP~lv~Llqs~~ 305 (550)
T KOG4224|consen 228 CTTAISNIAV-DRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASD-TEYQREIVEAGSLPLLVELLQSPM 305 (550)
T ss_pred HHHHhhhhhh-hHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhccc-chhhhHHHhcCCchHHHHHHhCcc
Confidence 9999999994 677888899888 999999999999999999999999999985 688889999999999999999877
Q ss_pred hhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCC-C
Q 000133 540 ANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSST-K 618 (2100)
Q Consensus 540 ~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~-~ 618 (2100)
....-....++.|++.+.-+ ...+.+.|-+++|+.+|+.+ +
T Consensus 306 ~plilasVaCIrnisihplN--------------------------------------e~lI~dagfl~pLVrlL~~~dn 347 (550)
T KOG4224|consen 306 GPLILASVACIRNISIHPLN--------------------------------------EVLIADAGFLRPLVRLLRAGDN 347 (550)
T ss_pred hhHHHHHHHHHhhcccccCc--------------------------------------ccceecccchhHHHHHHhcCCc
Confidence 66666667777777765432 11355677799999999875 5
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHH
Q 000133 619 EETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVL 698 (2100)
Q Consensus 619 ~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~l 698 (2100)
+++|-+|...|+||+..+.+++..+...|+||.|..++.+..-.++..-..|+..|+.. +..+..+.+.|.++.|+++
T Consensus 348 EeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~--d~~k~~lld~gi~~iLIp~ 425 (550)
T KOG4224|consen 348 EEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN--DNDKEALLDSGIIPILIPW 425 (550)
T ss_pred hhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc--cccHHHHhhcCCcceeecc
Confidence 67999999999999998888999999999999999999999999999988999888665 3677789999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHhcCcHHHHHHH------HcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCc
Q 000133 699 AGSPVLEVAEQATCALANLILDSEVSEKAI------AEEIILPATRVLCEGTISGKTLAAAAIARLLHSRK 763 (2100)
Q Consensus 699 l~~~~~evr~~aa~aL~~L~~~~~~~~~~v------~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~ 763 (2100)
+.+.+.|++.+|+.||.|++.+.+....++ ..++-..|.+++.++..-.+.-+.|.+.+++....
T Consensus 426 t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~ 496 (550)
T KOG4224|consen 426 TGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDHD 496 (550)
T ss_pred cCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999998866555554 25777889999999999999999999999997554
No 7
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.9e-27 Score=287.52 Aligned_cols=406 Identities=17% Similarity=0.183 Sum_probs=331.5
Q ss_pred HHHHHHhHccCCHHHHHHHHHHHHHHhhcCc-chhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHH
Q 000133 187 IDILVKLLTLGQSSTQAHVCFLLACMMEEDV-SVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARRE 265 (2100)
Q Consensus 187 v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~ 265 (2100)
.+.++..+.++++..+..+...++.+.+... +....++..|.+|.|++.|....++.++.+|+|+|.|+++++.+..+.
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 6778888899999888888888877764433 356677778999999999987776789999999999999988777666
Q ss_pred HHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhc
Q 000133 266 IAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYD 345 (2100)
Q Consensus 266 i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~ 345 (2100)
++++|++|.++.++.
T Consensus 148 vv~agavp~fi~Ll~----------------------------------------------------------------- 162 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLS----------------------------------------------------------------- 162 (514)
T ss_pred cccCCchHHHHHHhc-----------------------------------------------------------------
Confidence 666666666665554
Q ss_pred cccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHH
Q 000133 346 SKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALL 425 (2100)
Q Consensus 346 ~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~ 425 (2100)
+++.++++.|+++|+
T Consensus 163 -----------------------------------------------------------------s~~~~v~eQavWALg 177 (514)
T KOG0166|consen 163 -----------------------------------------------------------------SPSADVREQAVWALG 177 (514)
T ss_pred -----------------------------------------------------------------CCcHHHHHHHHHHHh
Confidence 445566677777777
Q ss_pred HhhccCccchHHHHhCCcHHHHHHhhCCCCH-HHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHH
Q 000133 426 KLCNNEGSLWRALQGREGIQLLISLLGLSSE-QQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDS 504 (2100)
Q Consensus 426 ~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~-~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A 504 (2100)
|++.+++.++..+.+.|++++|+.++..++. ...+.+.|+|.|||++....-..-.-..++|.|..++.+.++++...|
T Consensus 178 NIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da 257 (514)
T KOG0166|consen 178 NIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDA 257 (514)
T ss_pred ccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 7777777788888899999999999987765 778889999999998763333333334589999999999999999999
Q ss_pred HHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHH
Q 000133 505 ASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDAL 584 (2100)
Q Consensus 505 ~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL 584 (2100)
+|+|.+|+.++++.-..+.+.|++|.|+++|.+.++.++..|.++++|++..++.
T Consensus 258 ~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~------------------------- 312 (514)
T KOG0166|consen 258 CWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDE------------------------- 312 (514)
T ss_pred HHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHH-------------------------
Confidence 9999999988888889999999999999999999888888888888887654332
Q ss_pred HHHHhccCchhHHHHhhhccchHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHH
Q 000133 585 KSMLSVVSFSDILREGSAANDAVETMIKILS-STKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECI 663 (2100)
Q Consensus 585 ~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~-s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v 663 (2100)
....+.+.+++|.|..++. +..+.+++.|||++.||+.++++..++++.+|.+|.|+.++...+.++
T Consensus 313 ------------QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~ 380 (514)
T KOG0166|consen 313 ------------QTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDI 380 (514)
T ss_pred ------------HHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHH
Confidence 1235667889999999998 667779999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhc-----C----cHHHHHHHHcCcHH
Q 000133 664 LVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLIL-----D----SEVSEKAIAEEIIL 734 (2100)
Q Consensus 664 ~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~-----~----~~~~~~~v~~~~v~ 734 (2100)
+++|+++|.|++.+....+-.-+++.|.+++|+.+|.-.+..+...+..+|.||.. . ++....+-+.+.+.
T Consensus 381 rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggld 460 (514)
T KOG0166|consen 381 RKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLD 460 (514)
T ss_pred HHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChh
Confidence 99999999999998877676679999999999999988899999999999999961 1 23334444678888
Q ss_pred HHHHHHccCChhHHHHHHHHHHHHH
Q 000133 735 PATRVLCEGTISGKTLAAAAIARLL 759 (2100)
Q Consensus 735 ~L~~ll~~~~~~~~~~Aa~aL~~l~ 759 (2100)
.+-.+-.+++.++-..|..-+..-.
T Consensus 461 kiE~LQ~hen~~Iy~~A~~II~~yf 485 (514)
T KOG0166|consen 461 KIENLQSHENEEIYKKAYKIIDTYF 485 (514)
T ss_pred HHHHhhccccHHHHHHHHHHHHHhc
Confidence 7766655556567666665554444
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.96 E-value=1.2e-27 Score=263.42 Aligned_cols=422 Identities=18% Similarity=0.184 Sum_probs=342.7
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCCh
Q 000133 96 CIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTE 175 (2100)
Q Consensus 96 ~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~ 175 (2100)
.+|.|..-|.|+|.+.+..|..-++.+-+ ..++.....+++.|+||.+++++... +....+-.+.|+|.|+++...
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS--~E~~PPIq~VIdaGvVpRfvefm~~~--q~~mlqfEAaWalTNiaSGtt 147 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLS--KETSPPIQPVIDAGVVPRFVEFMDEI--QRDMLQFEAAWALTNIASGTT 147 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhc--cccCCCchhHHhccccHHHHHHHHhc--chhHHHHHHHHHHhhhccCcc
Confidence 57999999999999998888877776655 23444456689999999999999653 223366678999999998887
Q ss_pred hhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCC-CHHHHHHHHHHHHH
Q 000133 176 GFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGN-EASVRAEAAGALKS 254 (2100)
Q Consensus 176 ~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~v~~~Aa~aL~~ 254 (2100)
...+.++++|+||.++++|.+++.++++++.++|+|++.+++..+..+...|++.+++.++.++. +..+.+++.|.|+|
T Consensus 148 ~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSN 227 (526)
T COG5064 148 QQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSN 227 (526)
T ss_pred cceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHH
Confidence 77777899999999999999999999999999999999999988999999999999999998754 36899999999999
Q ss_pred hhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhh
Q 000133 255 LSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTL 334 (2100)
Q Consensus 255 Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 334 (2100)
|+.+..-.-..-.-..++|.|..++.+.+ +++.-.|+||+..++.+..
T Consensus 228 lcRGknP~P~w~~isqalpiL~KLiys~D---------~evlvDA~WAiSYlsDg~~----------------------- 275 (526)
T COG5064 228 LCRGKNPPPDWSNISQALPILAKLIYSRD---------PEVLVDACWAISYLSDGPN----------------------- 275 (526)
T ss_pred hhCCCCCCCchHHHHHHHHHHHHHHhhcC---------HHHHHHHHHHHHHhccCcH-----------------------
Confidence 99863211111111235778888876654 5666777888776665310
Q ss_pred hhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCH
Q 000133 335 GALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATN 414 (2100)
Q Consensus 335 gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~ 414 (2100)
+-...+.+.|..+.|+++|.+++.
T Consensus 276 --------------------------------------------------------E~i~avld~g~~~RLvElLs~~sa 299 (526)
T COG5064 276 --------------------------------------------------------EKIQAVLDVGIPGRLVELLSHESA 299 (526)
T ss_pred --------------------------------------------------------HHHHHHHhcCCcHHHHHHhcCccc
Confidence 011234567888889999999999
Q ss_pred HHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhcc
Q 000133 415 EVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILE 494 (2100)
Q Consensus 415 ~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~ 494 (2100)
.+|..|++.++|+..+++...+.++++|+++.+..+|.++...++.+|||.++|++.++.+..+++++.+.+|+|+.+|.
T Consensus 300 ~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls 379 (526)
T COG5064 300 KIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLS 379 (526)
T ss_pred cccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHH
Confidence 99999999999999998888889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcCC---hhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhc
Q 000133 495 SGSAKAKEDSASILRNLCNHS---EDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTS 571 (2100)
Q Consensus 495 ~~~~~vre~A~~aL~~L~~~~---~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~ 571 (2100)
..+-.++..|||++.|.+.+. |+.-+.+++.|.+.+|.++|.-.+.++.+.+..++.|+...++. -.+.
T Consensus 380 ~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~------d~~~-- 451 (526)
T COG5064 380 SAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQ------DRLR-- 451 (526)
T ss_pred HHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhH------HHHh--
Confidence 999999999999999998753 45666778899999999999988888888888888887654321 0000
Q ss_pred CCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 000133 572 DLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFET 635 (2100)
Q Consensus 572 ~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~ 635 (2100)
...+.+.....+.++||+..+..+-.+.+..+-..|-..+-..+..
T Consensus 452 ------------------~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFge 497 (526)
T COG5064 452 ------------------YGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGE 497 (526)
T ss_pred ------------------ccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHccc
Confidence 1112223445677789999999999999999999999888888754
No 9
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.96 E-value=1.6e-24 Score=266.11 Aligned_cols=1025 Identities=17% Similarity=0.147 Sum_probs=632.1
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHH-hhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHh
Q 000133 404 LLVGLITMATNEVQEELVRALLK-LCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITA 482 (2100)
Q Consensus 404 ~Lv~lL~~~~~~v~~~A~~aL~~-L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~ 482 (2100)
.|++-+.+.|.+.|..|+.-|.+ |-.+. ..-+.=-+...+..++++|.+.+.+||..|+.+|+-|++..++.+-.-
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkds-i~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~-- 85 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDS-IKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLET-- 85 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhh-hhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHH--
Confidence 46666778888899888877765 22221 000000134578999999999999999999999999986444432221
Q ss_pred cCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcH
Q 000133 483 AGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATI 562 (2100)
Q Consensus 483 ~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i 562 (2100)
.+..|..-+-++.++.|.-+.-.|...-..-+..........+.+.+...+..... ..
T Consensus 86 --~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~--------------~q------ 143 (1233)
T KOG1824|consen 86 --IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAIS--------------KQ------ 143 (1233)
T ss_pred --HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhh--------------hc------
Confidence 34555555555667777666555554443222221122223334444433332110 00
Q ss_pred HHHHHHhhcCCcchHHHHHHHHHHHHhccC--chhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhH
Q 000133 563 SQLTALLTSDLPESKVYVLDALKSMLSVVS--FSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLR 640 (2100)
Q Consensus 563 ~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~--~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~ 640 (2100)
.+...++..+.+.++.+....+ .++ .+.++ ...+..-+.+....+|+.|+.+|+.++...+..
T Consensus 144 --------e~~sai~~e~lDil~d~lsr~g~ll~~-fh~~i-----l~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~- 208 (1233)
T KOG1824|consen 144 --------EDVSAIKCEVLDILADVLSRFGTLLPN-FHLSI-----LKCLLPQLQSPRLAVRKKAITALGHLASSCNRD- 208 (1233)
T ss_pred --------ccchhhHHHHHHHHHHHHHhhcccCcc-hHHHH-----HHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH-
Confidence 0111123333333333322111 111 23333 556666677888899999999999998764322
Q ss_pred HHHHhcCchHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHh---CCCCHHHHHHHHHHHHH
Q 000133 641 ESSIAVKTLWSVMKLLDVG-SECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLA---GSPVLEVAEQATCALAN 716 (2100)
Q Consensus 641 ~~~~~~g~v~~Lv~lL~~~-~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll---~~~~~evr~~aa~aL~~ 716 (2100)
.-.+.+..|++.|..+ .....+.-.++|+.+++... .|..-.-...+|.+.++. ...++|.|+.+..++..
T Consensus 209 ---ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag--~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~ 283 (1233)
T KOG1824|consen 209 ---LYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAG--HRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALES 283 (1233)
T ss_pred ---HHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhc--chhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence 2235788888888544 45566777788888876543 222223345677788888 67899999999999999
Q ss_pred HhcCcHHHHHHHHcCcHHHHHHHHccCCh----------------------------------hHHHHHHHHHHHHHhcC
Q 000133 717 LILDSEVSEKAIAEEIILPATRVLCEGTI----------------------------------SGKTLAAAAIARLLHSR 762 (2100)
Q Consensus 717 L~~~~~~~~~~v~~~~v~~L~~ll~~~~~----------------------------------~~~~~Aa~aL~~l~~~~ 762 (2100)
+..+++.......+.++..+...+.++++ .+|+.|++++..+..+.
T Consensus 284 fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR 363 (1233)
T KOG1824|consen 284 FLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSR 363 (1233)
T ss_pred HHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhcc
Confidence 99887776666677888888888866322 38999999999988766
Q ss_pred ccchhHhhhhhccCcHHHHHHhhhhcccccchHhHHHHHHHHHHcCCCCCCCCcccceeeccCCCchhhhhhhccCCh--
Q 000133 763 KIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATP-- 840 (2100)
Q Consensus 763 ~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~~~~al~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~-- 840 (2100)
... +.... ...=+.+|...+.- ++.++.+.+.++..++++.+.. .-....++.++ ..|.+
T Consensus 364 ~E~--L~~~~--q~l~p~lI~RfkER-EEnVk~dvf~~yi~ll~qt~~~-------~~~~~d~d~~e------~~g~~s~ 425 (1233)
T KOG1824|consen 364 LEM--LPDFY--QTLGPALISRFKER-EENVKADVFHAYIALLKQTRPV-------IEVLADNDAME------QGGTPSD 425 (1233)
T ss_pred HHH--HHHHH--HHhCHHHHHHHHHH-hhhHHHHHHHHHHHHHHcCCCC-------cccccCchhhh------ccCCccc
Confidence 542 11100 11224556655543 4444499999999999888741 11111223333 12222
Q ss_pred --hHHHHHHHHHHHHhcCCcccchhcccccccchHHHHHHHhhcCCcceecchhhHHHHHhhhchhhHHhhhhc--cccc
Q 000133 841 --LLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGAALLICAAKVNHQRIVEDLNH--SNSC 916 (2100)
Q Consensus 841 --~~~~~a~~~L~~L~~~~~~~~g~~~~~~~~~~~~~~~~~l~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 916 (2100)
.+++....++.-+ .+.+.+.....|.+.--.+..+... +++ ..+-
T Consensus 426 ~~~L~~~~~~iVkai-----------------------~~qlr~ks~kt~~~cf~lL~eli~~--------lp~~l~~~~ 474 (1233)
T KOG1824|consen 426 LSMLSDQVPLIVKAI-----------------------QKQLREKSVKTRQGCFLLLTELINV--------LPGALAQHI 474 (1233)
T ss_pred hHHHHhhhHHHHHHH-----------------------HHHHhhccccchhhHHHHHHHHHHh--------Ccchhhhcc
Confidence 3333333333222 2233444444555443333333322 211 1112
Q ss_pred hhhHHHHHHHHhhhcCCCCcCCCCChhHHHHHhhhhcccccCCCCCCCCccee---cCchhHHHHHHHHhccCccchhhh
Q 000133 917 APLIQSLVTMLSVVEASPLRNQGNDDKEAISIYRYTSEEARNGGESESSTAVI---FGENLAIWLLCVLACHDEKCKIVI 993 (2100)
Q Consensus 917 ~~~v~~Lv~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~ 993 (2100)
.-.+...+..|...+ +.+...++++.++-+ ....+++.+| ++-..++...++.+.++ |++
T Consensus 475 ~slvpgI~~~l~DkS-----sss~~ki~~L~fl~~--------~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fy---Kis- 537 (1233)
T KOG1824|consen 475 PSLVPGIIYSLNDKS-----SSSNLKIDALVFLYS--------ALISHPPEVFHPHLSALSPPVVAAVGDPFY---KIS- 537 (1233)
T ss_pred cccchhhhhhcCCcc-----chHHHHHHHHHHHHH--------HHhcCChhhcccchhhhhhHHHHHhcCchH---hhh-
Confidence 223444444444333 345567778877775 4445666666 77788889999999888 333
Q ss_pred hhccchhhhhhhhhhccccccccccccCchhHHHHHHHHHH------hcchhh-----------------hhhhhhhchH
Q 000133 994 MEAGAMDVLTDRISDSLSQFTQMDYKEDSSIWICALLLAIL------FQDRDI-----------------IRAHATMKAI 1050 (2100)
Q Consensus 994 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~-----------------~~~~~~~~~i 1050 (2100)
+-|+-+.-+.+..- -+ .++-..=+..-+++.++..++ .+|.+| ........+.
T Consensus 538 --aEAL~v~~~lvkvi-rp-l~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L 613 (1233)
T KOG1824|consen 538 --AEALLVCQQLVKVI-RP-LQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTL 613 (1233)
T ss_pred --HHHHHHHHHHHHHh-cc-cCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 22232222221110 11 011111344556777777776 666777 2234556778
Q ss_pred HHHHHhhcchhHHhhHhHHHHHHHHHhcCCCCchhhhhccccchhhHHhhcccccchhhHHhhhHhhhhccCCcHHHHHh
Q 000133 1051 PILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGAAGGLISLLGCADADVQDLLDLSEEFALVRYPDQVALER 1130 (2100)
Q Consensus 1051 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 1130 (2100)
|+|...++++ +.|-.|+.|+.-+...+..=....+. ..++..+....+++.+.+ +.+.+..
T Consensus 614 ~il~eRl~nE--iTRl~AvkAlt~Ia~S~l~i~l~~~l----~~il~~l~~flrK~~r~l-------------r~~~l~a 674 (1233)
T KOG1824|consen 614 PILLERLGNE--ITRLTAVKALTLIAMSPLDIDLSPVL----TEILPELASFLRKNQRAL-------------RLATLTA 674 (1233)
T ss_pred HHHHHHHhch--hHHHHHHHHHHHHHhccceeehhhhH----HHHHHHHHHHHHHHHHHH-------------HHHHHHH
Confidence 8888888877 88888888888777666543222211 155778888888998888 7777888
Q ss_pred hhhhcccccCccccccHHHHHHhcCCC--CCCCCchHHHHHHHHHHhhcCchhhhHHHhcCcHHHHHHHHhcCCcchHHH
Q 000133 1131 LFRVEDIRVGATSRKAIPALVDLLKPI--PDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDATEE 1208 (2100)
Q Consensus 1131 L~~~~~~~~~~~~~~~i~~Lv~~l~~~--~~~~~~~~~Al~~L~~la~~~~~~r~~i~e~G~i~~L~~~L~s~~~~~~~~ 1208 (2100)
+..+...+.+...+..++.++..+.+- ....+....|+..|+.++..-+..- .-...-.++.++.+++|+.- |..
T Consensus 675 ~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l-~~~~~~iL~~ii~ll~Spll--qg~ 751 (1233)
T KOG1824|consen 675 LDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSL-LKISNPILDEIIRLLRSPLL--QGG 751 (1233)
T ss_pred HHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHH-HHHhhhhHHHHHHHhhCccc--cch
Confidence 888888888888899998888877543 1122345678888888887666432 22334578888888888632 333
Q ss_pred HHHHHHHHh----h-cCHHH--------------------------------Hhhhc------ccCcHHHHHHHHhcC--
Q 000133 1209 AATDLLGIL----F-SSAEI--------------------------------RRHES------AFAAVSQLVAVLRLG-- 1243 (2100)
Q Consensus 1209 ~~~~ll~~l----~-~~~~~--------------------------------~~~~~------~~~al~~Li~~L~~~-- 1243 (2100)
+...++..+ . .+++. ...+. +......|+.=+++.
T Consensus 752 al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s 831 (1233)
T KOG1824|consen 752 ALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKS 831 (1233)
T ss_pred HHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCC
Confidence 333322210 0 00100 00000 011122233323322
Q ss_pred CHHHHHHHHHHHHHhhcchhhhhhhhhcCChHHHHHhhccCChhhHHHHHHHHHHhhcCCchh--hHHHHhhhcc-----
Q 000133 1244 GRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSR--ALAVADVEMN----- 1316 (2100)
Q Consensus 1244 ~~~~r~~Aa~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~La~~~~~~--~~~~~~v~~g----- 1316 (2100)
++..|.+|.-.|+.+ +...+.....+....+++.+++++++++.+|..||++++.++... +.+...++..
T Consensus 832 ~~~ikvfa~LslGEl---gr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~Qy 908 (1233)
T KOG1824|consen 832 SDSIKVFALLSLGEL---GRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQY 908 (1233)
T ss_pred chhHHHHHHhhhhhh---ccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHH
Confidence 345566664444444 333334444556678889999999999999999999999987655 4444333443
Q ss_pred -hhHHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHH---------------HhhcChHHHHHHHhcCCchHHHHHHH
Q 000133 1317 -AVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTV---------------AAARCVEPLVSLLVTEFSPAQHSVVR 1380 (2100)
Q Consensus 1317 -al~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~~---------------~~~~~i~~Lv~lL~~~~~~~~~~A~~ 1380 (2100)
.+++|.+.+.+.+-+..+..+.++|+.|+.+.++..+- -....+|.|-..++++++..|..++.
T Consensus 909 LLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvs 988 (1233)
T KOG1824|consen 909 LLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVS 988 (1233)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhh
Confidence 57888888887766688999999999999875543211 12335677777888889988988888
Q ss_pred HHHHhcccHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCchhhHHHHhcCcHHHHHHHhccCChhHHHH
Q 000133 1381 ALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSA 1460 (2100)
Q Consensus 1381 aL~~L~~~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k~~i~~~~~i~~lv~~L~~~~~~~~~~ 1460 (2100)
+....-.+............|...+.+++++|.+||+.|+.++...+++.|..... .++.++..|++++...++.
T Consensus 989 avKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrD-----llpeLLp~Ly~eTkvrkel 1063 (1233)
T KOG1824|consen 989 AVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRD-----LLPELLPLLYSETKVRKEL 1063 (1233)
T ss_pred eeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHH-----HHHHHHHHHHHhhhhhHhh
Confidence 87655543333333344556889999999999999999999999999987665444 6778888888776554443
Q ss_pred HHHHHHHHHhccCCcccccccCchHHHHHHhccCCCCchhHhHHHHHHHHhhcCCCcccccccccCCChHhhhhccCCCC
Q 000133 1461 FAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPA 1540 (2100)
Q Consensus 1461 aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~~~~~~~~l~~Lv~~L~~~~ 1540 (2100)
+.+. -++|+-+.++ +|-+.++.|-++++.|.+....+ .....++..+..-|++.
T Consensus 1064 IreV------------------eMGPFKH~VD---dgLd~RKaaFEcmytLLdscld~----~dit~Fl~~~~~GL~Dh- 1117 (1233)
T KOG1824|consen 1064 IREV------------------EMGPFKHTVD---DGLDLRKAAFECMYTLLDSCLDR----LDITEFLNHVEDGLEDH- 1117 (1233)
T ss_pred hhhh------------------cccCcccccc---chHHHHHHHHHHHHHHHHhhhhh----ccHHHHHHHHHhhcchh-
Confidence 3222 3788888777 88999999999999997654433 24455677777777665
Q ss_pred HHHHHHHHHHHHHhhccccccccccccCchHHHHHHhc------------cCCHHHHHHHHHHHHHhhcCC
Q 000133 1541 PAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLG------------SGIHILQQRAVKALVSIALTW 1599 (2100)
Q Consensus 1541 ~~vq~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~lL~------------s~~~~vr~~Al~AL~~Ls~~~ 1599 (2100)
-++|+.....|.+++.-........-+..++||-+..+ ....++++.|++|+..+.+-|
T Consensus 1118 ydiKmlt~l~l~rLa~lcPs~VlqrlD~l~EpLr~t~~~k~k~~svKqE~ek~~eLkRSAlRav~~L~~ip 1188 (1233)
T KOG1824|consen 1118 YDIKMLTFLMLARLADLCPSAVLQRLDRLVEPLRKTCTLKVKANSVKQEFEKQDELKRSALRAVAALLTIP 1188 (1233)
T ss_pred hHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhcccccchHhHhHHHHHHHHHHHHHHHHHHhccc
Confidence 78999999999999875555444444456677776663 255789999999999986554
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.86 E-value=4e-18 Score=219.62 Aligned_cols=526 Identities=16% Similarity=0.116 Sum_probs=376.5
Q ss_pred hhHHHHHHHHHHHHccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhcC---CHHHHHHHHHHHHhhh
Q 000133 6 GTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSG---SLAVKIQAATVLGSLC 82 (2100)
Q Consensus 6 ~~~~~v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~~---~~~v~~~aa~~L~~L~ 82 (2100)
...+++...+|.+=+. -.+|.++...++.|++..++...++.. ...+..|.+.|+++ +.+.-.+...++-.++
T Consensus 120 a~~~~~d~yiE~lYe~---~~ek~~~~~~il~La~~~~NL~~l~~n-e~l~~aL~RvLred~~ks~~l~tnI~~iF~~fS 195 (708)
T PF05804_consen 120 ASINDLDEYIELLYED---IPEKIRGTSLILQLARNPENLEELVQN-ETLMSALARVLREDWKKSVELATNIIYIFFCFS 195 (708)
T ss_pred CCHHHHHHHHHHHhcc---cHHHHHHHHHHHHHhCCcchHHHHHHh-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 4588899999988753 367999999999999999988887654 46788899999764 3356666666666666
Q ss_pred ccchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhc---cCCCCcccccchhccCChHHHHHHhhccCCCcchH
Q 000133 83 KENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQ---GGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVV 159 (2100)
Q Consensus 83 ~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~---~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v 159 (2100)
.-.+-..-+.....-...++++. -+.+++-.+ ...+.. ........++.+.+ ....+-.+++. ++ .+
T Consensus 196 ~f~~fH~~l~~~kiG~l~m~iie---~Elkr~~~w-~~~l~~~~~~~~~~~~~~~~~~~--~~kk~~~l~~k---Qe-qL 265 (708)
T PF05804_consen 196 NFSQFHPILAHYKIGSLCMEIIE---HELKRHDLW-QEELRKKKKAAEEKPEAKKDYEK--ELKKLQTLIRK---QE-QL 265 (708)
T ss_pred hHHHHHHHHHhccHHHHHHHHHH---HHHHHHHHH-HHHHHhhhhhhccchhhhhhHHH--HHHHHHHHHHH---HH-HH
Confidence 54444444444433333344433 233332211 111111 00000000110111 12223333332 22 34
Q ss_pred HHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCC
Q 000133 160 DNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSG 239 (2100)
Q Consensus 160 ~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~ 239 (2100)
...+...|.|++.+. .....|+..|+|+.|+++|.+++.++...+..+|.+|+...+ ++..+.+.|.++.|++++.+.
T Consensus 266 lrv~~~lLlNLAed~-~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~E-NK~~m~~~giV~kL~kLl~s~ 343 (708)
T PF05804_consen 266 LRVAFYLLLNLAEDP-RVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKE-NKDEMAESGIVEKLLKLLPSE 343 (708)
T ss_pred HHHHHHHHHHHhcCh-HHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-HHHHHHHcCCHHHHHHHhcCC
Confidence 446778899999666 444558999999999999999999999999999999987766 889999999999999999986
Q ss_pred CCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccc
Q 000133 240 NEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQ 319 (2100)
Q Consensus 240 ~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~ 319 (2100)
+ .+++..+.++|.|||. +++.|..+++.|.+|.|+.++..++ .+..+...|.|+|...+.
T Consensus 344 ~-~~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~~-----------~~~val~iLy~LS~dd~~------- 403 (708)
T PF05804_consen 344 N-EDLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDPN-----------FREVALKILYNLSMDDEA------- 403 (708)
T ss_pred C-HHHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCCc-----------hHHHHHHHHHHhccCHhh-------
Confidence 6 5899999999999998 7899999999999999999997542 456788999999974321
Q ss_pred cccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhcc
Q 000133 320 SLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENS 399 (2100)
Q Consensus 320 ~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~ 399 (2100)
+. + |...+.++.+++++-.++.+.++..++..+.+|+.++.+...+.+.
T Consensus 404 -------r~-~-----------------------f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g 452 (708)
T PF05804_consen 404 -------RS-M-----------------------FAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEG 452 (708)
T ss_pred -------HH-H-----------------------HhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhc
Confidence 11 1 1112344555565555555445666677777889999999999999
Q ss_pred ccHHHHHHhhc-CCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCC-CCHHHHHHHHHHHHHhccCCcccH
Q 000133 400 EAKRLLVGLIT-MATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGL-SSEQQQECSVALLCLLSNENDDSK 477 (2100)
Q Consensus 400 g~i~~Lv~lL~-~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~v~~~A~~aL~nLs~~~~~~~ 477 (2100)
++++.|+...- ..++- ....++|++.+.+..+..+. +.|..|+.++.. ++++...++.++|+||...+.+..
T Consensus 453 ~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~ 526 (708)
T PF05804_consen 453 NGLQSLMKRALKTRDPL----LLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWA 526 (708)
T ss_pred CcHHHHHHHHHhcccHH----HHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHH
Confidence 99999987654 34432 34699999999766666554 578888888876 477888999999999986444444
Q ss_pred HHHHhcCChHHHHHhccCC--CHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcC--ChhHHHHHHHHHHHH
Q 000133 478 WAITAAGGIPPLVQILESG--SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNG--SANGKEIAAKTLNHL 553 (2100)
Q Consensus 478 ~~i~~~g~i~~Lv~lL~~~--~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~Aa~aL~~L 553 (2100)
..+.+.+.+|.|.++|..+ .+++...++..++.++. ++.+...+.+.|.++.|+.+|+.. +.+..-....++.+|
T Consensus 527 ~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~l 605 (708)
T PF05804_consen 527 QLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQL 605 (708)
T ss_pred HHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHH
Confidence 4455679999999999866 56788889999999997 478888899999999999999874 456677777777777
Q ss_pred hcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 000133 554 IHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIF 633 (2100)
Q Consensus 554 ~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~ 633 (2100)
..|.+. ....+...+++..|+.++.+.++++|+-|-.+|--++
T Consensus 606 l~h~~t-------------------------------------r~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~ 648 (708)
T PF05804_consen 606 LFHEET-------------------------------------REVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIA 648 (708)
T ss_pred HcChHH-------------------------------------HHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 665432 1112334556788999999999999999999999888
Q ss_pred cCChhhHHH
Q 000133 634 ETRKDLRES 642 (2100)
Q Consensus 634 ~~~~~~~~~ 642 (2100)
..+++....
T Consensus 649 e~d~~w~~r 657 (708)
T PF05804_consen 649 EYDEEWAER 657 (708)
T ss_pred HhCHHHHHH
Confidence 876554333
No 11
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.83 E-value=3.6e-18 Score=220.01 Aligned_cols=392 Identities=19% Similarity=0.180 Sum_probs=310.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchh
Q 000133 58 VLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFS 137 (2100)
Q Consensus 58 ~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~ 137 (2100)
.+-.+++.. +..-.-+...|.+++.+.....++...|+++.|+++|.+++.+....+...|.+||. ...++..|.
T Consensus 254 k~~~l~~kQ-eqLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi----~~ENK~~m~ 328 (708)
T PF05804_consen 254 KLQTLIRKQ-EQLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSI----FKENKDEMA 328 (708)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC----CHHHHHHHH
Confidence 334444443 333345677899999999999999999999999999999999999999999999998 334577799
Q ss_pred ccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCc
Q 000133 138 TEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDV 217 (2100)
Q Consensus 138 ~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~ 217 (2100)
+.|++|.|..++.+.+ ..+...+++.|.||++++ ..+..|++.|++|.|+.+|.++ ..+..+..+|.+++..++
T Consensus 329 ~~giV~kL~kLl~s~~---~~l~~~aLrlL~NLSfd~-~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~ 402 (708)
T PF05804_consen 329 ESGIVEKLLKLLPSEN---EDLVNVALRLLFNLSFDP-ELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDE 402 (708)
T ss_pred HcCCHHHHHHHhcCCC---HHHHHHHHHHHHHhCcCH-HHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHh
Confidence 9999999999998743 346778999999999766 5678899999999999999854 566778999988887654
Q ss_pred chhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHH
Q 000133 218 SVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQE 297 (2100)
Q Consensus 218 ~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~ 297 (2100)
.+..+...+++|.+++++...++..+...++..+.||+. ++.+.+.+.+.||++.|+....... ++-
T Consensus 403 -~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~-~~rnaqlm~~g~gL~~L~~ra~~~~--------D~l--- 469 (708)
T PF05804_consen 403 -ARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLAL-NKRNAQLMCEGNGLQSLMKRALKTR--------DPL--- 469 (708)
T ss_pred -hHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhc-CHHHHHHHHhcCcHHHHHHHHHhcc--------cHH---
Confidence 888898899999999998876666778889999999998 6788889999999999988764321 111
Q ss_pred HHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHH
Q 000133 298 NAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQE 377 (2100)
Q Consensus 298 ~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~ 377 (2100)
....++|++.+..
T Consensus 470 -LlKlIRNiS~h~~------------------------------------------------------------------ 482 (708)
T PF05804_consen 470 -LLKLIRNISQHDG------------------------------------------------------------------ 482 (708)
T ss_pred -HHHHHHHHHhcCc------------------------------------------------------------------
Confidence 1235566654210
Q ss_pred HHHHHHHHHhCCCccchhhhccccHHHHHHhhcC-CCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCC--
Q 000133 378 RTIEALASLYGNPLLSIKLENSEAKRLLVGLITM-ATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLS-- 454 (2100)
Q Consensus 378 ~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~-- 454 (2100)
..+..+ .+.+..|+..+.. .+++....+..+|+||...+.+..+.+.+.+.+|.|..+|..+
T Consensus 483 -------------~~k~~f--~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~ 547 (708)
T PF05804_consen 483 -------------PLKELF--VDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGAS 547 (708)
T ss_pred -------------hHHHHH--HHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCC
Confidence 111111 1234445555553 4678889999999999987666555566778999999999754
Q ss_pred CHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCC--CHHHHHHHHHHHHHHhcCChhhHHHHHh-CCcHHHH
Q 000133 455 SEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG--SAKAKEDSASILRNLCNHSEDIRACVES-ADAVPAL 531 (2100)
Q Consensus 455 ~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~vre~A~~aL~~L~~~~~~~~~~i~~-~g~i~~L 531 (2100)
.++++.+++..++.++. ++.....+.+.|.++.|+.+|... +.+..-+.+++++.+..| ++.|..+.+ .+++..|
T Consensus 548 ~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h-~~tr~~ll~~~~~~~yl 625 (708)
T PF05804_consen 548 EDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFH-EETREVLLKETEIPAYL 625 (708)
T ss_pred ChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC-hHHHHHHHhccchHHHH
Confidence 56788899999999995 788889999999999999999865 789999999999999998 566666655 7788999
Q ss_pred HHHhhcCChhHHHHHHHHHHHHhcCC
Q 000133 532 LWLLKNGSANGKEIAAKTLNHLIHKS 557 (2100)
Q Consensus 532 v~lL~~~~~~~~~~Aa~aL~~L~~~~ 557 (2100)
++++++.++.+++.|-.+|--++..+
T Consensus 626 idL~~d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 626 IDLMHDKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence 99999999999999998887776644
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.82 E-value=8.7e-19 Score=218.58 Aligned_cols=421 Identities=20% Similarity=0.209 Sum_probs=306.9
Q ss_pred CchHHHHHHHhcCCHHHHHHHHHHHHhhhccch-hhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCccc
Q 000133 54 QAVPVLVSLLRSGSLAVKIQAATVLGSLCKENE-LRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVG 132 (2100)
Q Consensus 54 g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~-~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~ 132 (2100)
--+|..+.+|.+.++.++.+|+..+.++|..+. .|..+.+.|+||.||.+|.+.+.+++..|+.||+||.++...
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~---- 308 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKST---- 308 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCC----
Confidence 347888999999999999999999999996554 678888999999999999999999999999999999984221
Q ss_pred ccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHcc-CCHHHHHHHHHHHHH
Q 000133 133 SKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTL-GQSSTQAHVCFLLAC 211 (2100)
Q Consensus 133 ~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s-~~~~v~~~a~~~L~~ 211 (2100)
+.++-+|.+.+||+.++++|+. .|.+++++.+.+|+|
T Consensus 309 ------------------------------------------~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWN 346 (717)
T KOG1048|consen 309 ------------------------------------------DSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWN 346 (717)
T ss_pred ------------------------------------------cccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 1233447788999999999987 788999999999999
Q ss_pred HhhcCcchhhHHhhhchHHHHHHHhcCCC-------------CHHHHHHHHHHHHHhhcCChHhHHHHHhC-CChHHHHH
Q 000133 212 MMEEDVSVCSRVLAADATKQLLKLLGSGN-------------EASVRAEAAGALKSLSDHCKDARREIAGS-NGIPAMIN 277 (2100)
Q Consensus 212 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-------------~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~-g~i~~Lv~ 277 (2100)
|++.+. ....+-..++..|..-+-.+. +.++-.+++++|+|+++...+.|+.+.++ |.|..|+.
T Consensus 347 LSS~D~--lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~ 424 (717)
T KOG1048|consen 347 LSSNDA--LKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLF 424 (717)
T ss_pred ccchhH--HHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHH
Confidence 988743 333344455666655442211 24688999999999999888999999877 66899998
Q ss_pred hhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhcc-ccccCCC---ChhhhhhhhhhhHHHHHHhccccCCCCC
Q 000133 278 ATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLG-QSLESCS---SPAQVADTLGALASALMIYDSKAESTKP 353 (2100)
Q Consensus 278 ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~-~~~~~~~---~~~~~~~~~gal~~ll~~l~~~~~~~~~ 353 (2100)
.++.. ...+..+..-+|++++.|+|++......+..-- +.+.... ...+..+..|+..
T Consensus 425 ~iq~~---i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~--------------- 486 (717)
T KOG1048|consen 425 SIQTA---IQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFG--------------- 486 (717)
T ss_pred HHHHH---HHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCccccccccc---------------
Confidence 88642 234556778899999999999986443222100 0000000 0000000011110
Q ss_pred CCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhc-CCCHHHHHHHHHHHHHhhccCc
Q 000133 354 SDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLIT-MATNEVQEELVRALLKLCNNEG 432 (2100)
Q Consensus 354 ~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~~L~~~~~ 432 (2100)
..+.+..+..-.-.+......|....++.....+.....++. +.++.+.+.++.+|-||+....
T Consensus 487 ---------------~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~ 551 (717)
T KOG1048|consen 487 ---------------FKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW 551 (717)
T ss_pred ---------------chhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence 000000000000000011233444556777777777666665 6688999999999999998765
Q ss_pred cc----hHHH-HhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCC------CHHHH
Q 000133 433 SL----WRAL-QGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG------SAKAK 501 (2100)
Q Consensus 433 ~~----~~~i-~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~------~~~vr 501 (2100)
.. +..+ .+..+.++|+++|+.+++.+.+.++.+|+||+. +..++..|. .++++.|++.|..+ +.++.
T Consensus 552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~-d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv 629 (717)
T KOG1048|consen 552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSR-DIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTV 629 (717)
T ss_pred cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhcc-Cchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHH
Confidence 43 3334 567889999999999999999999999999995 677777776 78999999999765 36888
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcC-ChhHHHHHHHHHHHHhcCC
Q 000133 502 EDSASILRNLCNHSEDIRACVESADAVPALLWLLKNG-SANGKEIAAKTLNHLIHKS 557 (2100)
Q Consensus 502 e~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~Aa~aL~~L~~~~ 557 (2100)
..++.+|.|+...+..+...+.+.++++.|+.+.++. +++.-+.|+..|..|+.+.
T Consensus 630 ~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~ 686 (717)
T KOG1048|consen 630 RAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYK 686 (717)
T ss_pred HHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHH
Confidence 8899999999988888888899999999999999874 6688899999998887644
No 13
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=2.9e-16 Score=174.64 Aligned_cols=363 Identities=17% Similarity=0.217 Sum_probs=271.5
Q ss_pred HHHHHHHHHccCCChhHHHHHHHHHHHHhhcch--hhhhhhhccCCchHHHHHHHhc---CCHHHHHHHHHHHHhhhccc
Q 000133 11 VAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRE--NAFSAVGSHSQAVPVLVSLLRS---GSLAVKIQAATVLGSLCKEN 85 (2100)
Q Consensus 11 v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~--~~~~~i~~~~g~v~~L~~lL~~---~~~~v~~~aa~~L~~L~~~~ 85 (2100)
+.++...++.+-. +.-+.....|-.|+.+++ .+.++.+.+.|+.+.++.++.. ++..+-..+..+|..+.
T Consensus 61 i~~~~~~i~e~i~--~~~~E~s~ll~~l~d~ck~~~A~r~la~~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt--- 135 (461)
T KOG4199|consen 61 INETVDKIKEHIG--QKLEETTELLEQLADECKKSLAHRVLAGKNGAHDALITLLELAESPNESVLKKSLEAINSLT--- 135 (461)
T ss_pred HHHhHHHHHHHHH--hhhHHHHHHHHHHHHHHhhhHHHHHHhccCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhh---
Confidence 5555555554332 112334444444544543 6788888889999988887753 34455566666676665
Q ss_pred hhhHHHHhcCChHHHHHhhc--CCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHHHHH
Q 000133 86 ELRVKVLLGGCIPPLLGLLK--SSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLL 163 (2100)
Q Consensus 86 ~~~~~i~~~g~i~~Lv~lL~--s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a 163 (2100)
..+..+....++..++++|. +++.++-......+..-+. .++.+++.|++.++.|.+...|....+. ..++ .+
T Consensus 136 ~~qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~---~hE~nrQ~~m~~~il~Li~~~l~~~gk~-~~VR-el 210 (461)
T KOG4199|consen 136 HKQPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACI---MHEVNRQLFMELKILELILQVLNREGKT-RTVR-EL 210 (461)
T ss_pred cCCcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHH---HhHHHHHHHHHhhHHHHHHHHHcccCcc-HHHH-HH
Confidence 34556777888999999995 4455555444444544444 5888899999999999999888876655 3355 46
Q ss_pred HHHHHHhccCCh---------hhHHHHHhcCCHHHHHHhHcc-CCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHH
Q 000133 164 TGALRNLSTSTE---------GFWAATVQAGGIDILVKLLTL-GQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLL 233 (2100)
Q Consensus 164 ~~aL~nL~~~~~---------~~~~~i~~~g~v~~Lv~lL~s-~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv 233 (2100)
.++++.|..++| ++.+.+...|++..|++.++- -+|++...++.+|..++..++ .|..+.+.||+..|+
T Consensus 211 ~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E-~C~~I~e~GGl~tl~ 289 (461)
T KOG4199|consen 211 YDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDE-ICKSIAESGGLDTLL 289 (461)
T ss_pred HHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHH-HHHHHHHccCHHHHH
Confidence 889999987765 466668899999999999986 368899999999999998877 899999999999999
Q ss_pred HHhcCCCCHHH---HHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCC
Q 000133 234 KLLGSGNEASV---RAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGL 310 (2100)
Q Consensus 234 ~lL~~~~~~~v---~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~ 310 (2100)
.++.++++... .+.++..|+.|+. ++++|..|++.||.+.++.++...+ .++.+.+.++.++.-+|.
T Consensus 290 ~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii~l~~~h~-------~~p~Vi~~~~a~i~~l~L-- 359 (461)
T KOG4199|consen 290 RCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKIITLALRHS-------DDPLVIQEVMAIISILCL-- 359 (461)
T ss_pred HHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHHHHHHHcC-------CChHHHHHHHHHHHHHHh--
Confidence 99999777544 4778888999986 7899999999999999999985432 345555555555544432
Q ss_pred cchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCC
Q 000133 311 SNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNP 390 (2100)
Q Consensus 311 ~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~ 390 (2100)
+.|
T Consensus 360 -----------------------------------------------------------------------------R~p 362 (461)
T KOG4199|consen 360 -----------------------------------------------------------------------------RSP 362 (461)
T ss_pred -----------------------------------------------------------------------------cCc
Confidence 345
Q ss_pred ccchhhhccccHHHHHHhhcCC--CHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHH
Q 000133 391 LLSIKLENSEAKRLLVGLITMA--TNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCL 468 (2100)
Q Consensus 391 ~~~~~l~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~n 468 (2100)
++...+.+.|+-...++.|+.. ...+|++||+.++|+...+.++++.+.. .|++.|+...+..++.+...+-.+|+.
T Consensus 363 dhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~-~GiE~Li~~A~~~h~tce~~akaALRD 441 (461)
T KOG4199|consen 363 DHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLA-NGIEKLIRTAKANHETCEAAAKAALRD 441 (461)
T ss_pred chHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHh-ccHHHHHHHHHhcCccHHHHHHHHHHh
Confidence 5555666777777777777743 4579999999999999998888877765 678888888888899999999999999
Q ss_pred hccC
Q 000133 469 LSNE 472 (2100)
Q Consensus 469 Ls~~ 472 (2100)
|.++
T Consensus 442 LGc~ 445 (461)
T KOG4199|consen 442 LGCD 445 (461)
T ss_pred cCcc
Confidence 9864
No 14
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.71 E-value=6.9e-16 Score=196.66 Aligned_cols=372 Identities=18% Similarity=0.196 Sum_probs=272.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhhcCC---CHHHHHHHHHHHHHHhccCCCCccccc
Q 000133 58 VLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSS---SAEGQIAAAKTIYAVSQGGAKDYVGSK 134 (2100)
Q Consensus 58 ~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~s~---~~~~~~~A~~aL~~Ls~~~~~~~~~~~ 134 (2100)
.|+.+|... .+.++++.|..+..+++.+..+++.||+|.|+.+|... +.+.+..|-.||+||-.....+..+++
T Consensus 201 sllsml~t~---D~ee~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RR 277 (2195)
T KOG2122|consen 201 SLLSMLGTD---DEEEMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRR 277 (2195)
T ss_pred HHhhhcccC---CHHHHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHH
Confidence 456666655 45688999999999999999999999999999999754 456788899999999884332222333
Q ss_pred chhccCChH-------HHHHHhhccCC--CcchHHH---HHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccC-----
Q 000133 135 IFSTEGVVP-------VLWEQLKNGLK--SGNVVDN---LLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLG----- 197 (2100)
Q Consensus 135 ~~~~~g~vp-------~L~~lL~~~~~--~~~~v~~---~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~----- 197 (2100)
.+.-.-++. .+|.++..+.. .+..++. .|+.+|..+++ +++++++|-+.|+++.+-+|+.-.
T Consensus 278 E~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhg 356 (2195)
T KOG2122|consen 278 EKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHG 356 (2195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 222122222 24445544321 1111222 34555666664 568999999999999999988631
Q ss_pred -------CHHHHHHHHHHHHHHhhcCcchhhHHh-hhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHH-HHHh
Q 000133 198 -------QSSTQAHVCFLLACMMEEDVSVCSRVL-AADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARR-EIAG 268 (2100)
Q Consensus 198 -------~~~v~~~a~~~L~~L~~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~-~i~~ 268 (2100)
.-.+|.++..+|.||.+++..++..+. ..|.+..+|..|.+.. .++...-+.+|+||+++-+.+-+ .+.+
T Consensus 357 p~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~p-eeL~QV~AsvLRNLSWRAD~nmKkvLrE 435 (2195)
T KOG2122|consen 357 PETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAP-EELLQVYASVLRNLSWRADSNMKKVLRE 435 (2195)
T ss_pred CCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcCh-HHHHHHHHHHHHhccccccccHHHHHHh
Confidence 235789999999999999998888775 4689999999999876 48999999999999997766554 5556
Q ss_pred CCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhcccc
Q 000133 269 SNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKA 348 (2100)
Q Consensus 269 ~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~ 348 (2100)
.|-+..|..+.-...+ +......+.||+||+.+ +..+...+.+..|+|++++.+|.
T Consensus 436 ~GsVtaLa~~al~~~k--------EsTLKavLSALWNLSAH-------------cteNKA~iCaVDGALaFLVg~LS--- 491 (2195)
T KOG2122|consen 436 TGSVTALAACALRNKK--------ESTLKAVLSALWNLSAH-------------CTENKAEICAVDGALAFLVGTLS--- 491 (2195)
T ss_pred hhhHHHHHHHHHHhcc--------cchHHHHHHHHhhhhhc-------------ccccchhhhcccchHHHHHhhcc---
Confidence 7888888876644332 23456677888888874 23455566666666666555433
Q ss_pred CCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 000133 349 ESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLC 428 (2100)
Q Consensus 349 ~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~ 428 (2100)
|..+. ..-.+.+.+-.+|+|.+
T Consensus 492 --------------------------------------Y~~qs--------------------~tLaIIEsaGGILRNVS 513 (2195)
T KOG2122|consen 492 --------------------------------------YEGQS--------------------NTLAIIESAGGILRNVS 513 (2195)
T ss_pred --------------------------------------ccCCc--------------------chhhhhhcCccHHHHHH
Confidence 00000 11122333344444433
Q ss_pred ---ccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHH
Q 000133 429 ---NNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSA 505 (2100)
Q Consensus 429 ---~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~ 505 (2100)
..++.+++.++++..+..|+..|++++-.+.-++|++|+||+..+++.++.+.+.|+++.|.+++.+.+..+-+.++
T Consensus 514 S~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSa 593 (2195)
T KOG2122|consen 514 SLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSA 593 (2195)
T ss_pred hHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHH
Confidence 34577889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCh
Q 000133 506 SILRNLCNHSE 516 (2100)
Q Consensus 506 ~aL~~L~~~~~ 516 (2100)
.+|.||..+-+
T Consensus 594 aALrNLln~RP 604 (2195)
T KOG2122|consen 594 AALRNLLNFRP 604 (2195)
T ss_pred HHHHHHhcCCc
Confidence 99999987643
No 15
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=1.4e-12 Score=168.70 Aligned_cols=856 Identities=13% Similarity=0.103 Sum_probs=470.3
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhccCCCCccccc
Q 000133 56 VPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLK-SSSAEGQIAAAKTIYAVSQGGAKDYVGSK 134 (2100)
Q Consensus 56 v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~ 134 (2100)
+..|+.-|.+.+.++|.+|-++|.++...+. ..|.|..++. +.++++|..|+.-++.+... ...+-.
T Consensus 6 l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~---------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~---~w~~l~ 73 (1075)
T KOG2171|consen 6 LEQLLQQLLSPDNEVRRQAEEALETLAKTEP---------LLPALAHILATSADPQVRQLAAVLLRKLLTK---HWSRLS 73 (1075)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhhcccc---------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHH---HhhcCC
Confidence 4567777788888999999999998875443 5777888885 56788999999999988872 111111
Q ss_pred chhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCC-hhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHh
Q 000133 135 IFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTST-EGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMM 213 (2100)
Q Consensus 135 ~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~-~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~ 213 (2100)
.-.++..-..|+..+.+. ..+.++...+..+..++... ++.|.. .++.|.+..+|+++..|+.|..+|+.+.
T Consensus 74 ~e~~~siks~lL~~~~~E--~~~~vr~k~~dviAeia~~~l~e~WPe-----ll~~L~q~~~S~~~~~rE~al~il~s~~ 146 (1075)
T KOG2171|consen 74 AEVQQSIKSSLLEIIQSE--TEPSVRHKLADVIAEIARNDLPEKWPE-----LLQFLFQSTKSPNPSLRESALLILSSLP 146 (1075)
T ss_pred HHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHhccccchHH-----HHHHHHHHhcCCCcchhHHHHHHHHhhh
Confidence 112233334455555442 33446666666666665432 235764 4778899999999999999999998887
Q ss_pred hcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhC-CChHHHHHhhcCCCcchhhhhhh
Q 000133 214 EEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGS-NGIPAMINATIAPSKEFMQGEYA 292 (2100)
Q Consensus 214 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~-g~i~~Lv~ll~~~~~e~~~~~~~ 292 (2100)
...+.....+ -....+.|.+.+..+.+. +|..|+.++..++...+.++...... .-+|.++..+.... +.+ +
T Consensus 147 ~~~~~~~~~~-~~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i----~~~-d 219 (1075)
T KOG2171|consen 147 ETFGNTLQPH-LDDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVI----QDG-D 219 (1075)
T ss_pred hhhccccchh-HHHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhh----hcc-c
Confidence 5554321211 112345555666666655 99999999999887554333333222 34666776664332 111 1
Q ss_pred HHHHHHHHHHHHHhhCCCcc--------hhhhccccccCCCChhhhhhhhhhhHHHHHHhcccc---CCCCCCCchhhHH
Q 000133 293 QALQENAMCALANISGGLSN--------VISSLGQSLESCSSPAQVADTLGALASALMIYDSKA---ESTKPSDPLIVEQ 361 (2100)
Q Consensus 293 ~~l~~~a~~aL~nl~~~~~~--------~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~---~~~~~~~~~~i~~ 361 (2100)
......+..+|..+....+. .+...-+...+......++ .-++..++...+... .....+.+ .+.+
T Consensus 220 ~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R--~~ALe~ivs~~e~Ap~~~k~~~~~~~-~lv~ 296 (1075)
T KOG2171|consen 220 DDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIR--HLALEFLVSLSEYAPAMCKKLALLGH-TLVP 296 (1075)
T ss_pred hHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHH--HHHHHHHHHHHHhhHHHhhhchhhhc-cHHH
Confidence 22223333444333321111 1111111112222222222 123443333333100 00000111 1222
Q ss_pred HHHhhcCCCC---------------ChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000133 362 TLVNQFKPRL---------------PFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLK 426 (2100)
Q Consensus 362 ~Lv~lL~~~~---------------~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~ 426 (2100)
.+...+.... .+.....|.++|-.++.+=.-+. .-.-.++.+-.++++.++.-|.++..+|..
T Consensus 297 ~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~--v~p~~~~~l~~~l~S~~w~~R~AaL~Als~ 374 (1075)
T KOG2171|consen 297 VLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQ--VLPPLFEALEAMLQSTEWKERHAALLALSV 374 (1075)
T ss_pred HHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhh--ehHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 2222222111 01234455666665543211000 011234456678889999999999999999
Q ss_pred hhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCC-CHHHHHHHH
Q 000133 427 LCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG-SAKAKEDSA 505 (2100)
Q Consensus 427 L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~vre~A~ 505 (2100)
++.+..+.-.... ...++..+..|+++++.||..|+.+++.++.+.....+.-.....+|.|+..+.+. +++++.+|+
T Consensus 375 i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa 453 (1075)
T KOG2171|consen 375 IAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAA 453 (1075)
T ss_pred HHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHH
Confidence 9998766433322 24678888899999999999999999999987776666666777888999998876 789999999
Q ss_pred HHHHHHhcCChhhHHHHHhCCcHH-HHHHHhhcCChhHHHHHHHHHHHHhcCCCC-------CcHHHHHHHhhcCC-c--
Q 000133 506 SILRNLCNHSEDIRACVESADAVP-ALLWLLKNGSANGKEIAAKTLNHLIHKSDT-------ATISQLTALLTSDL-P-- 574 (2100)
Q Consensus 506 ~aL~~L~~~~~~~~~~i~~~g~i~-~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~-------~~i~~L~~lL~~~~-~-- 574 (2100)
.++-|++...+...-.-.-.+.+. .|..+++++++.+++.+..+++..+..... ..+|.|...|...+ .
T Consensus 454 ~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~ 533 (1075)
T KOG2171|consen 454 AALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDL 533 (1075)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhh
Confidence 999999875433221111133444 333455678899999999999999876543 44555666665444 2
Q ss_pred -chHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHH---hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchH
Q 000133 575 -ESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKI---LSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLW 650 (2100)
Q Consensus 575 -~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~l---L~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~ 650 (2100)
..|....+|++-++...+.... ..- ....+..+..+ -.+.++..+..-..+.+++|+.-.+. -.....-++|
T Consensus 534 r~LrgktmEcisli~~AVGke~F-~~~--a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~-F~p~L~~Vmp 609 (1075)
T KOG2171|consen 534 RELRGKTMECLSLIARAVGKEKF-LPL--AEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDD-FAPFLPVVMP 609 (1075)
T ss_pred HHHHhhHHHHHHHHHHHhhhhhh-hHh--HHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchh-hHhHHHHHhH
Confidence 3666677888876654432221 110 01114444444 22345667777777777777642211 1233344667
Q ss_pred HHHHhhcCC---------CH---------------------------HHHHHHHHHHHHHhcCCchhHHHHHHhCCChH-
Q 000133 651 SVMKLLDVG---------SE---------------------------CILVEASRCLAAIFLSVRENREVAAVARDALS- 693 (2100)
Q Consensus 651 ~Lv~lL~~~---------~~---------------------------~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~- 693 (2100)
+|.+-.+-. +. .-+..|+.+|+.++....+. .. ..-..+++
T Consensus 610 pl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~-F~-pYve~v~~l 687 (1075)
T KOG2171|consen 610 PLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEA-FA-PYVEQVVEL 687 (1075)
T ss_pred HHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhh-hh-hHHHHHHHH
Confidence 776543210 00 13566888888887654321 11 11123444
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhc-------CcHHHHHHHHcCcHHHHHHHHccCChh-HHHHHHHHHHHHHhcCccc
Q 000133 694 PLVVLAGSPVLEVAEQATCALANLIL-------DSEVSEKAIAEEIILPATRVLCEGTIS-GKTLAAAAIARLLHSRKID 765 (2100)
Q Consensus 694 ~Lv~ll~~~~~evr~~aa~aL~~L~~-------~~~~~~~~v~~~~v~~L~~ll~~~~~~-~~~~Aa~aL~~l~~~~~~~ 765 (2100)
.+..+....+..||+.|+.++++++. +.+.....+...+.+.++..+..+... +...-..++.+.....+..
T Consensus 688 ~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~ 767 (1075)
T KOG2171|consen 688 MVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDN 767 (1075)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcc
Confidence 23344456888999999999999962 333344455678888888888877654 5555555555555533321
Q ss_pred ----hhHhhhhhccCcHHHHHHhhhhc----------ccccch------------HhHHHHHHHHHHcCCCCCCCCcccc
Q 000133 766 ----YTITDCVNRAGTVLALVSFLESA----------SGSVAT------------SEALDALAILSRSGGASGHVKPAWQ 819 (2100)
Q Consensus 766 ----~~~~~~~~~~g~l~~li~~l~s~----------~~~v~~------------~~al~~L~~L~~~~~~~~~~~~~~~ 819 (2100)
+.+.. ...+....+..-.+.. +..... ..+.+++..+++...+ .|..
T Consensus 768 ~L~~~~~~~--~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~-~f~p---- 840 (1075)
T KOG2171|consen 768 CLNEDGLEA--LLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALKG-SFLP---- 840 (1075)
T ss_pred cCCcHHHHH--HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccc-cccH----
Confidence 00111 0011111111100000 111111 2233344445444433 1111
Q ss_pred eeeccCCCchhhhhhhccCChhHHHHHHHHHHHHhcCCcccchhcccccccch-------HHHHHHHhhcCCcceecchh
Q 000133 820 VLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCI-------SSIARRVISCTNPKVKIGGA 892 (2100)
Q Consensus 820 ~~~~~~~~l~~L~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~g~~~~~~~~~~-------~~~~~~~l~s~~~~~r~~~~ 892 (2100)
-+.+..+-++..+..+.+.-|+-|.-++.-+ |-..|.=. ..++...++++++++|-.|+
T Consensus 841 ---~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~-----------ie~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAs 906 (1075)
T KOG2171|consen 841 ---FFENFLPLIVKLLKSKKTVARQWAVCIFDDL-----------IEGCGEASAKYKERFLPLVLEALQDSDPEVRQAAA 906 (1075)
T ss_pred ---HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH-----------HHhcccccchHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 1222333344455555554466666655444 33333222 23444558899999999999
Q ss_pred hHHHHHhhhchhhHHhhhhccccchhhHHHHHHHHhhhcCCCCcCCCCChhHHHHHhhhhcccccCCCCCCCCcceecCc
Q 000133 893 ALLICAAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAISIYRYTSEEARNGGESESSTAVIFGE 972 (2100)
Q Consensus 893 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Lv~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 972 (2100)
|.++++|...... =.+.+......|+.+++....- ...+...+-.+..+++. + +..++..+.+..
T Consensus 907 YGiGvlaq~~g~~------y~~v~~~~l~~L~~~iq~~~ar-~Ee~~~ateNa~gaiak---i-----~~~~~~~i~vdq 971 (1075)
T KOG2171|consen 907 YGMGVLAQFGGED------YAPVCSEALPLLVQVLQPPLAR-TEENRRATENAIGAIAK---I-----LLFNPNRIPVDQ 971 (1075)
T ss_pred HHHHHHHHHcCcc------hHHHHHHHHHHHHHHHcChhhh-hHHHhHHHHHHHHHHHH---H-----HHhCCccCcHHH
Confidence 9999999774322 1223444555555555533311 00122233334444442 2 222232333667
Q ss_pred hhHHHHHHHHhcc
Q 000133 973 NLAIWLLCVLACH 985 (2100)
Q Consensus 973 ~~~~~l~~~~~~~ 985 (2100)
.++.|+..+.-..
T Consensus 972 vl~~~l~~LPl~~ 984 (1075)
T KOG2171|consen 972 VLPAWLSWLPLKE 984 (1075)
T ss_pred HHHHHHHhCCCcc
Confidence 7788887665433
No 16
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.66 E-value=5.9e-15 Score=184.76 Aligned_cols=378 Identities=17% Similarity=0.162 Sum_probs=279.4
Q ss_pred ChHHHHHHHHHHHHH-hCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCcc--chHHHHhCCcHHHHH
Q 000133 372 PFLVQERTIEALASL-YGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGS--LWRALQGREGIQLLI 448 (2100)
Q Consensus 372 ~~~vq~~aa~aL~~L-~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~--~~~~i~~~g~i~~Lv 448 (2100)
...+|-.|+--+..+ +++.+.+..+.+.|+|+.|+.++++...++|.+||++|+||..++.. ++-.|.+.+||+.++
T Consensus 246 ~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~ 325 (717)
T KOG1048|consen 246 DPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLV 325 (717)
T ss_pred ChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHH
Confidence 344788888888888 78888999999999999999999999999999999999999988776 888999999999999
Q ss_pred HhhCC-CCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCC--------------CHHHHHHHHHHHHHHhc
Q 000133 449 SLLGL-SSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG--------------SAKAKEDSASILRNLCN 513 (2100)
Q Consensus 449 ~lL~s-~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~--------------~~~vre~A~~aL~~L~~ 513 (2100)
++|+. .|.++++....+|+||++ ++..+..++. .++..|-.-+-.+ ..++-.++..+|.|++.
T Consensus 326 ~~Lr~t~D~ev~e~iTg~LWNLSS-~D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs 403 (717)
T KOG1048|consen 326 RLLRHTQDDEVRELITGILWNLSS-NDALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSS 403 (717)
T ss_pred HHHHhhcchHHHHHHHHHHhcccc-hhHHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccc
Confidence 99996 799999999999999996 4555554443 3666666544211 14456789999999999
Q ss_pred CChhhHHHHHh-CCcHHHHHHHhhc------CChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCC--cchHH--HHHH
Q 000133 514 HSEDIRACVES-ADAVPALLWLLKN------GSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDL--PESKV--YVLD 582 (2100)
Q Consensus 514 ~~~~~~~~i~~-~g~i~~Lv~lL~~------~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~--~~~~~--~a~~ 582 (2100)
.+.+.|+.+.+ .|.|..|+..+++ .+.+..+.+..+|.||++.-+.+.-+.....+.... +.... ....
T Consensus 404 ~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~g 483 (717)
T KOG1048|consen 404 AGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVG 483 (717)
T ss_pred hhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccc
Confidence 88888888877 7889999998874 466788999999999998665433232222221110 00000 1112
Q ss_pred HHHHHHhc-------cCchhHHH-----HhhhccchHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCChh----hHHHH-H
Q 000133 583 ALKSMLSV-------VSFSDILR-----EGSAANDAVETMIKIL-SSTKEETQAKSASALAGIFETRKD----LRESS-I 644 (2100)
Q Consensus 583 aL~~l~~~-------~~~~~~~~-----~~i~~~~~i~~Lv~lL-~s~~~~~~~~Aa~aL~~L~~~~~~----~~~~~-~ 644 (2100)
|++....- .+.++... +.......|.....+| .+.++.+.++++.+|.|++.+... ++..+ .
T Consensus 484 cf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~ 563 (717)
T KOG1048|consen 484 CFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFR 563 (717)
T ss_pred cccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhh
Confidence 22211111 00111000 0011223355555555 467899999999999999987643 34444 6
Q ss_pred hcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCC------CHHHHHHHHHHHHHHh
Q 000133 645 AVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSP------VLEVAEQATCALANLI 718 (2100)
Q Consensus 645 ~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~------~~evr~~aa~aL~~L~ 718 (2100)
+..++|+|+++|+.++..+.+.++.+|+||+.+. .++. ++...+++.|+..+..+ .+++-..++.+|+|++
T Consensus 564 kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~--rnk~-ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv 640 (717)
T KOG1048|consen 564 KEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI--RNKE-LIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIV 640 (717)
T ss_pred hccCccHHHHHHhcCCchHHHHHHHHHhhhccCc--hhhh-hhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHH
Confidence 7789999999999999999999999999998765 4555 45689999999999764 3678889999999999
Q ss_pred -cCcHHHHHHHHcCcHHHHHHHHccCChh-HHHHHHHH
Q 000133 719 -LDSEVSEKAIAEEIILPATRVLCEGTIS-GKTLAAAA 754 (2100)
Q Consensus 719 -~~~~~~~~~v~~~~v~~L~~ll~~~~~~-~~~~Aa~a 754 (2100)
.+...+..+...+.++.|+-+.++..+. .-+.|..-
T Consensus 641 ~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~v 678 (717)
T KOG1048|consen 641 RKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSV 678 (717)
T ss_pred HHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHH
Confidence 5577889999999999999999985553 33344333
No 17
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.64 E-value=1.2e-14 Score=185.63 Aligned_cols=387 Identities=17% Similarity=0.130 Sum_probs=290.9
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCChhhH
Q 000133 99 PLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFW 178 (2100)
Q Consensus 99 ~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~ 178 (2100)
.|+.+|...|.+- -++.|.+++. ....+.++...|-+|.|+.+|-...+.+...+..+-.+|.|+.++.++.+
T Consensus 201 sllsml~t~D~ee---~ar~fLemSs----s~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~k 273 (2195)
T KOG2122|consen 201 SLLSMLGTDDEEE---MARTFLEMSS----SPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEK 273 (2195)
T ss_pred HHhhhcccCCHHH---HHHHHHHhcc----CchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchh
Confidence 4555555555443 3567788887 33446778999999999999988777778888889999999998876655
Q ss_pred HHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHh-hcCcchhhHHhhhchHHHHHHHhcCCCCHHHHH-HHHHHHHHhh
Q 000133 179 AATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMM-EEDVSVCSRVLAADATKQLLKLLGSGNEASVRA-EAAGALKSLS 256 (2100)
Q Consensus 179 ~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~-~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~-~Aa~aL~~Ls 256 (2100)
+.-++..+++.|-+ ++.++- .++... ...+.. .... .+-+. .|..+|..++
T Consensus 274 r~RRE~kvL~lLeQ--------IraYC~-~~~~~lqar~~~~-----------------apa~-~~H~lcaA~~~lMK~S 326 (2195)
T KOG2122|consen 274 RGRREKKVLHLLEQ--------IRAYCE-TCWTWLQARGPAI-----------------APAS-DEHQLCAALCTLMKLS 326 (2195)
T ss_pred hhHHHHHHHHHHHH--------HHHHHH-HHHHHHHhcCCCC-----------------CCcc-cchhhHHHHHHHHHhh
Confidence 54444443433322 222222 221111 111100 0011 23333 6677888888
Q ss_pred cCChHhHHHHHhCCChHHHHHhhcCCC---cchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhh
Q 000133 257 DHCKDARREIAGSNGIPAMINATIAPS---KEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADT 333 (2100)
Q Consensus 257 ~~~~~~~~~i~~~g~i~~Lv~ll~~~~---~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~ 333 (2100)
. +.+.|.++.+.||+.++-++++-.. +....++.+..+++++..+|.||.+|+.+.-.+|
T Consensus 327 F-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~L---------------- 389 (2195)
T KOG2122|consen 327 F-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATL---------------- 389 (2195)
T ss_pred c-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhh----------------
Confidence 7 7899999999999999888775432 1112345678999999999999999865333332
Q ss_pred hhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCC--CccchhhhccccHHHHHHh-hc
Q 000133 334 LGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGN--PLLSIKLENSEAKRLLVGL-IT 410 (2100)
Q Consensus 334 ~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~--~~~~~~l~~~g~i~~Lv~l-L~ 410 (2100)
+...++++.+|..|.+.++++ ++-.+..|.||..+ ...++.+.+.|-+..|+.+ ++
T Consensus 390 --------------------Cs~rgfMeavVAQL~s~peeL-~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~ 448 (2195)
T KOG2122|consen 390 --------------------CSQRGFMEAVVAQLISAPEEL-LQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALR 448 (2195)
T ss_pred --------------------hhhhhHHHHHHHHHhcChHHH-HHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHH
Confidence 223467888888888877665 55677889999644 3457888899998888764 55
Q ss_pred CCCHHHHHHHHHHHHHhhccCccchHHHHhC-CcHHHHHHhhCCC----CHHHHHHHHHHHHHhccC---CcccHHHHHh
Q 000133 411 MATNEVQEELVRALLKLCNNEGSLWRALQGR-EGIQLLISLLGLS----SEQQQECSVALLCLLSNE---NDDSKWAITA 482 (2100)
Q Consensus 411 ~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~-g~i~~Lv~lL~s~----~~~v~~~A~~aL~nLs~~---~~~~~~~i~~ 482 (2100)
..........+.+||||+.++.+++..|... |++..|+.+|.-. .-.+.+.+-++|.|.+.. .++.++.+.+
T Consensus 449 ~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~ 528 (2195)
T KOG2122|consen 449 NKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRR 528 (2195)
T ss_pred hcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHH
Confidence 6677888999999999999999999999775 5589999999743 456788888999987643 5677999999
Q ss_pred cCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCC
Q 000133 483 AGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKS 557 (2100)
Q Consensus 483 ~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~ 557 (2100)
++.+..|+++|++.+-.+..++|.+||||...+++.+.++.+.|+++.|..++++.+..+-+.++.+|.||..+.
T Consensus 529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997754
No 18
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.61 E-value=7.1e-13 Score=152.30 Aligned_cols=426 Identities=15% Similarity=0.108 Sum_probs=319.5
Q ss_pred HHHHHHHHHHHHHhCCCccch----hhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHH
Q 000133 374 LVQERTIEALASLYGNPLLSI----KLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLIS 449 (2100)
Q Consensus 374 ~vq~~aa~aL~~L~~~~~~~~----~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~ 449 (2100)
.+......|++..+.++.-|. +-..++.+.+|.+...+++.++..+++++|+|+|..+.+.|..+.+.||-..+++
T Consensus 57 tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid 136 (604)
T KOG4500|consen 57 TVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVID 136 (604)
T ss_pred hhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHh
Confidence 456667778887765544333 3345677888888888889999999999999999999999999999999777777
Q ss_pred hhCC----CC---HHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCC--CHHHHHHHHHHHHHHhcC-ChhhH
Q 000133 450 LLGL----SS---EQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG--SAKAKEDSASILRNLCNH-SEDIR 519 (2100)
Q Consensus 450 lL~s----~~---~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~vre~A~~aL~~L~~~-~~~~~ 519 (2100)
.|+. .+ .+...-+.+.|.|...++++.+..+.+.|.++.|...+.-+ +....+.......||..- ++...
T Consensus 137 ~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~ 216 (604)
T KOG4500|consen 137 VLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLY 216 (604)
T ss_pred hhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhh
Confidence 7763 22 34444567889999888899999999999999999988655 666677777777776542 12223
Q ss_pred HHHHhCCcHHHHHHHhhcC-ChhHHHHHHHHHHHHhcCC-------CCCcHHHHHHHhhcC-CcchHHHHHHHHHHHHh-
Q 000133 520 ACVESADAVPALLWLLKNG-SANGKEIAAKTLNHLIHKS-------DTATISQLTALLTSD-LPESKVYVLDALKSMLS- 589 (2100)
Q Consensus 520 ~~i~~~g~i~~Lv~lL~~~-~~~~~~~Aa~aL~~L~~~~-------~~~~i~~L~~lL~~~-~~~~~~~a~~aL~~l~~- 589 (2100)
....+......+++++.+. .++..+.....|...+..+ ..+-+..+..+++.- +..-+.....-+...+.
T Consensus 217 ~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el 296 (604)
T KOG4500|consen 217 PFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAEL 296 (604)
T ss_pred hhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhH
Confidence 4444566778888998874 5567777778888777654 235666777776652 21122222222221111
Q ss_pred ---ccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhc-----CCCH
Q 000133 590 ---VVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLD-----VGSE 661 (2100)
Q Consensus 590 ---~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~-----~~~~ 661 (2100)
+..-.+..+.....+..+..++.++.|.+...+..++-+++|+++. ++++-.+++.+.+..|+..+. +++-
T Consensus 297 ~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~-D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV 375 (604)
T KOG4500|consen 297 DVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARR-DDICIQLVQKDFLNKLISCLMQEKDVDGNV 375 (604)
T ss_pred hhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 1122333455555555788899999999999999999999999997 678888999999999999983 3556
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcH-HHHHHH-HcCcHHHHHHH
Q 000133 662 CILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSE-VSEKAI-AEEIILPATRV 739 (2100)
Q Consensus 662 ~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~-~~~~~v-~~~~v~~L~~l 739 (2100)
+.+.+++.+|+|+.... .++..+...|..+.++..++...|.+...-..+|.-+..+.+ .+.+.. ....++.|+.+
T Consensus 376 ~~qhA~lsALRnl~IPv--~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~W 453 (604)
T KOG4500|consen 376 ERQHACLSALRNLMIPV--SNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDW 453 (604)
T ss_pred hhHHHHHHHHHhccccC--CchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHh
Confidence 78999999999998765 677778999999999999999999999888888887776655 455554 56899999999
Q ss_pred HccCChh-HHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcccccchHhHHHHHHHH
Q 000133 740 LCEGTIS-GKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAIL 804 (2100)
Q Consensus 740 l~~~~~~-~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~~~~al~~L~~L 804 (2100)
.++.+.. +..++-+-|.-+.++.... ++..++...|++...+.++.+.+.-.. .+|+-+|..+
T Consensus 454 sks~D~aGv~gESnRll~~lIkHs~~k-dv~~tvpksg~ik~~Vsm~t~~hi~mq-nEalVal~~~ 517 (604)
T KOG4500|consen 454 SKSPDFAGVAGESNRLLLGLIKHSKYK-DVILTVPKSGGIKEKVSMFTKNHINMQ-NEALVALLST 517 (604)
T ss_pred hhCCccchhhhhhhHHHHHHHHhhHhh-hhHhhccccccHHHHHHHHHHhhHHHh-HHHHHHHHHH
Confidence 9999988 7888889999888886653 455567779999999999988776666 7777777655
No 19
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=1.3e-09 Score=141.74 Aligned_cols=485 Identities=16% Similarity=0.155 Sum_probs=314.8
Q ss_pred HHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHH
Q 000133 187 IDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREI 266 (2100)
Q Consensus 187 v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i 266 (2100)
+..|+.-|.++|.+++..|-.++.++.... ...+.|..++..+.++++|..|+-.++.+..+.
T Consensus 6 l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~----------~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~------- 68 (1075)
T KOG2171|consen 6 LEQLLQQLLSPDNEVRRQAEEALETLAKTE----------PLLPALAHILATSADPQVRQLAAVLLRKLLTKH------- 68 (1075)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhhccc----------chHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-------
Confidence 445666677788889999999996554332 268899999999888999999999999887630
Q ss_pred HhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhcc
Q 000133 267 AGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDS 346 (2100)
Q Consensus 267 ~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~ 346 (2100)
+..++ .++|..
T Consensus 69 --w~~l~-------------------~e~~~s------------------------------------------------ 79 (1075)
T KOG2171|consen 69 --WSRLS-------------------AEVQQS------------------------------------------------ 79 (1075)
T ss_pred --hhcCC-------------------HHHHHH------------------------------------------------
Confidence 11111 111111
Q ss_pred ccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000133 347 KAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLK 426 (2100)
Q Consensus 347 ~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~ 426 (2100)
+.+.|.....+.+...||...+..++.++++.-.. .-++.++.|++..+++++..|+.|...|.+
T Consensus 80 ------------iks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e---~WPell~~L~q~~~S~~~~~rE~al~il~s 144 (1075)
T KOG2171|consen 80 ------------IKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE---KWPELLQFLFQSTKSPNPSLRESALLILSS 144 (1075)
T ss_pred ------------HHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHhcCCCcchhHHHHHHHHh
Confidence 11112222223444557788888888886552211 335667888889999999999999999999
Q ss_pred hhccCccc-hHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHH-hcCChHHHHHhcc----CCCHHH
Q 000133 427 LCNNEGSL-WRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAIT-AAGGIPPLVQILE----SGSAKA 500 (2100)
Q Consensus 427 L~~~~~~~-~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~-~~g~i~~Lv~lL~----~~~~~v 500 (2100)
+...-++. +..+. ...+.+.+-+.+++..++..++.++..++...+.++.... -..-+|.++..+. .++.+.
T Consensus 145 ~~~~~~~~~~~~~~--~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~ 222 (1075)
T KOG2171|consen 145 LPETFGNTLQPHLD--DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDA 222 (1075)
T ss_pred hhhhhccccchhHH--HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHH
Confidence 87653321 11111 2345566667777777999999999988765543322222 2235666666554 456666
Q ss_pred HHHHHHHHHHHhcCChhh-HHHHHhCCcHHHHHHHhhcC--ChhHHHHHHHHHHHHhcCCC----------CCcHHHHHH
Q 000133 501 KEDSASILRNLCNHSEDI-RACVESADAVPALLWLLKNG--SANGKEIAAKTLNHLIHKSD----------TATISQLTA 567 (2100)
Q Consensus 501 re~A~~aL~~L~~~~~~~-~~~i~~~g~i~~Lv~lL~~~--~~~~~~~Aa~aL~~L~~~~~----------~~~i~~L~~ 567 (2100)
-..+..+|..|....+.. +..+. .++.--+.+.++. ++.+|..|...|..++.... ...++.++.
T Consensus 223 a~~~l~~l~El~e~~pk~l~~~l~--~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~ 300 (1075)
T KOG2171|consen 223 AKSALEALIELLESEPKLLRPHLS--QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLA 300 (1075)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHH--HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHH
Confidence 667888888888654432 22221 2344444444443 56688888888877765421 134555666
Q ss_pred HhhcCC----------------cchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000133 568 LLTSDL----------------PESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAG 631 (2100)
Q Consensus 568 lL~~~~----------------~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~ 631 (2100)
++.+.. ......|.++|-.+++.-+... .-....+.+-.++.+.+..-|.+|..+|+.
T Consensus 301 ~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~------v~p~~~~~l~~~l~S~~w~~R~AaL~Als~ 374 (1075)
T KOG2171|consen 301 MMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQ------VLPPLFEALEAMLQSTEWKERHAALLALSV 374 (1075)
T ss_pred hcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhh------ehHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 554321 1145567888887776544221 112236667778899999999999999999
Q ss_pred HhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCC-CHHHHHHH
Q 000133 632 IFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSP-VLEVAEQA 710 (2100)
Q Consensus 632 L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~-~~evr~~a 710 (2100)
++.+..+.... .-..+++..+.+|++++++|+..|+.+++.++.+....-.. ....-.++.|+..+.++ ++.|+.+|
T Consensus 375 i~EGc~~~m~~-~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk-~~~e~l~~aL~~~ld~~~~~rV~ahA 452 (1075)
T KOG2171|consen 375 IAEGCSDVMIG-NLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQK-KHHERLPPALIALLDSTQNVRVQAHA 452 (1075)
T ss_pred HHcccHHHHHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHH-HHHHhccHHHHHHhcccCchHHHHHH
Confidence 99998776444 33468999999999999999999999999998765432111 23345666788887764 66899999
Q ss_pred HHHHHHHhcC--cHHHHHHHHcCcHH-HHHHHHccCChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhh
Q 000133 711 TCALANLILD--SEVSEKAIAEEIIL-PATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLES 787 (2100)
Q Consensus 711 a~aL~~L~~~--~~~~~~~v~~~~v~-~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s 787 (2100)
+.||-|++.+ ++.... .-++++. .|..++.+++..++++++.++..+...... ++.. ..+-.++.|...+.+
T Consensus 453 a~al~nf~E~~~~~~l~p-YLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~--~F~p--Y~d~~Mp~L~~~L~n 527 (1075)
T KOG2171|consen 453 AAALVNFSEECDKSILEP-YLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQE--KFIP--YFDRLMPLLKNFLQN 527 (1075)
T ss_pred HHHHHHHHHhCcHHHHHH-HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh--hhHh--HHHHHHHHHHHHHhC
Confidence 9999999844 333333 3455666 566666777777999999999988865443 2333 123344444455555
Q ss_pred cc
Q 000133 788 AS 789 (2100)
Q Consensus 788 ~~ 789 (2100)
.+
T Consensus 528 ~~ 529 (1075)
T KOG2171|consen 528 AD 529 (1075)
T ss_pred CC
Confidence 44
No 20
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=1.9e-12 Score=144.73 Aligned_cols=332 Identities=15% Similarity=0.118 Sum_probs=255.0
Q ss_pred hcCCHHHHHHhHc---cCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCC-HHHHHHHHHHHHHhhcC
Q 000133 183 QAGGIDILVKLLT---LGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNE-ASVRAEAAGALKSLSDH 258 (2100)
Q Consensus 183 ~~g~v~~Lv~lL~---s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~v~~~Aa~aL~~Ls~~ 258 (2100)
..|+.+.++.++. +++..+...+..+|..+... .+.+.+..++..++++|....+ .++.......+..-+-+
T Consensus 102 ~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~----qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~ 177 (461)
T KOG4199|consen 102 KNGAHDALITLLELAESPNESVLKKSLEAINSLTHK----QPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIM 177 (461)
T ss_pred cCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcC----CcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 4566676666554 56777777888888666543 3567888999999999976443 56777777788777777
Q ss_pred ChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhH
Q 000133 259 CKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALA 338 (2100)
Q Consensus 259 ~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~ 338 (2100)
+..+|+.+.+.+.++.+...+....+ ..+.+...++++-+..+++-.+++ .. +..
T Consensus 178 hE~nrQ~~m~~~il~Li~~~l~~~gk--------~~~VRel~~a~r~l~~dDDiRV~f--------------g~---ah~ 232 (461)
T KOG4199|consen 178 HEVNRQLFMELKILELILQVLNREGK--------TRTVRELYDAIRALLTDDDIRVVF--------------GQ---AHG 232 (461)
T ss_pred hHHHHHHHHHhhHHHHHHHHHcccCc--------cHHHHHHHHHHHHhcCCCceeeec--------------ch---hhH
Confidence 88999999999999999988866542 357778888888877765433332 11 111
Q ss_pred HHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcC-CCHHHH
Q 000133 339 SALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITM-ATNEVQ 417 (2100)
Q Consensus 339 ~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~-~~~~v~ 417 (2100)
+.-++.+ .++...|+..++.+-+..+-.....+|..|+-+.+.++.+.+.|++..|++++.+ ++...+
T Consensus 233 hAr~ia~-----------e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r 301 (461)
T KOG4199|consen 233 HARTIAK-----------EGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNR 301 (461)
T ss_pred HHHHHHH-----------hhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHH
Confidence 2222211 2455666666665544445667788899999999999999999999999999986 444444
Q ss_pred ---HHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhC--CCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHh
Q 000133 418 ---EELVRALLKLCNNEGSLWRALQGREGIQLLISLLG--LSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQI 492 (2100)
Q Consensus 418 ---~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~--s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~l 492 (2100)
+.++..|+.|+.+ ++.+..|++.||.+.++.++. +.+|.+.++++.+++.|+-..|++...+++.|+-...++.
T Consensus 302 ~l~k~~lslLralAG~-DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqA 380 (461)
T KOG4199|consen 302 TLAKTCLSLLRALAGS-DSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQA 380 (461)
T ss_pred HHHHHHHHHHHHHhCC-CchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHH
Confidence 4667777777766 678899999999999999775 4578888999999999999999999999999999999999
Q ss_pred ccCC--CHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcC
Q 000133 493 LESG--SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHK 556 (2100)
Q Consensus 493 L~~~--~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~ 556 (2100)
++.. ...+|.++||.+.|+..++.+++..+.. .+++.|+..-+..++.....+-.+|..|..+
T Consensus 381 mkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~-~GiE~Li~~A~~~h~tce~~akaALRDLGc~ 445 (461)
T KOG4199|consen 381 MKAHPVAAQVQRNACNMIRNIVVRSAENRTILLA-NGIEKLIRTAKANHETCEAAAKAALRDLGCD 445 (461)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHh-ccHHHHHHHHHhcCccHHHHHHHHHHhcCcc
Confidence 9865 5788999999999999988888877665 4578888888888888888888888888654
No 21
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.56 E-value=2.3e-12 Score=148.13 Aligned_cols=448 Identities=14% Similarity=0.054 Sum_probs=311.0
Q ss_pred hcCCHHHHHHHHHHHHhhhccchhhHHHHhc----CChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhcc
Q 000133 64 RSGSLAVKIQAATVLGSLCKENELRVKVLLG----GCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTE 139 (2100)
Q Consensus 64 ~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~----g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~ 139 (2100)
...+..++...+.+++..++++..|..++.. +.+.+|.....|++.++...+.+||+|+++. ++.+|..+.+.
T Consensus 52 ~~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCyd---n~E~R~a~~~l 128 (604)
T KOG4500|consen 52 MTASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYD---NNENRAAFFNL 128 (604)
T ss_pred eeccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhcc---CchhHHHHHhc
Confidence 3445678888999999999998888877655 5567777777889999999999999999993 55678999999
Q ss_pred CChHHHHHHhhccCCCcc----hHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccC--CHHHHHHHHHHHHHHh
Q 000133 140 GVVPVLWEQLKNGLKSGN----VVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLG--QSSTQAHVCFLLACMM 213 (2100)
Q Consensus 140 g~vp~L~~lL~~~~~~~~----~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~--~~~v~~~a~~~L~~L~ 213 (2100)
|+-..+++.|++....|. ..-....+.|.|...+.++.+.+..+.|.++.|...+.-+ +.+..+.......++.
T Consensus 129 gGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nll 208 (604)
T KOG4500|consen 129 GGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLL 208 (604)
T ss_pred CCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHH
Confidence 998888899887644433 2333456778898889999999999999999999988654 3344444433333444
Q ss_pred hcCcch-hhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhh
Q 000133 214 EEDVSV-CSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYA 292 (2100)
Q Consensus 214 ~~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~ 292 (2100)
+-...+ .+...+....-.+++++.+....+.+..+..+|...+. ++..+-.+++.|-+..++.+++.-. .+......
T Consensus 209 s~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~ae-nd~Vkl~la~~gl~e~~~~lv~~~k-~~t~k~d~ 286 (604)
T KOG4500|consen 209 SFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAE-NDLVKLSLAQNGLLEDSIDLVRNMK-DFTKKTDM 286 (604)
T ss_pred HHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhc-CcceeeehhhcchHHHHHHHHHhcc-cccchHHH
Confidence 222212 22334556667778888765556788899999999987 7788888999999999999886521 11100111
Q ss_pred HHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCC
Q 000133 293 QALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLP 372 (2100)
Q Consensus 293 ~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~ 372 (2100)
-.+...++.-..-+..|+ .+.+..|...++...+..++.+.+.
T Consensus 287 ~~l~k~~~el~vllltGD-------------------------------------eSMq~L~~~p~~l~~~~sw~~S~d~ 329 (604)
T KOG4500|consen 287 LNLFKRIAELDVLLLTGD-------------------------------------ESMQKLHADPQFLDFLESWFRSDDS 329 (604)
T ss_pred HHHHHhhhhHhhhhhcCc-------------------------------------hHHHHHhcCcHHHHHHHHHhcCCch
Confidence 111111111111111111 1111122233577888889988877
Q ss_pred hHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhc-----CCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHH
Q 000133 373 FLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLIT-----MATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLL 447 (2100)
Q Consensus 373 ~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~-----~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~L 447 (2100)
.. +..+.-+++++++++.++..+.+.+.+..|++++. +++.++|.+++.+|+|+.-. ..++..+..+|..+.+
T Consensus 330 ~l-~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP-v~nka~~~~aGvteaI 407 (604)
T KOG4500|consen 330 NL-ITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP-VSNKAHFAPAGVTEAI 407 (604)
T ss_pred hH-HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc-CCchhhccccchHHHH
Confidence 64 77788899999999999999999999999999885 35778999999999999988 4567788889999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHH-hcCChHHHHHhccCCCHH-HHHHHHHHHHHHhcCC--hhhHHHHH
Q 000133 448 ISLLGLSSEQQQECSVALLCLLSNENDDSKWAIT-AAGGIPPLVQILESGSAK-AKEDSASILRNLCNHS--EDIRACVE 523 (2100)
Q Consensus 448 v~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~-vre~A~~aL~~L~~~~--~~~~~~i~ 523 (2100)
+..++...+.++..-.+.|+-+....+.....+. .-.-+..|+..-++++-. +--..-+.+.-+..|+ .+.-..+.
T Consensus 408 L~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvp 487 (604)
T KOG4500|consen 408 LLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVP 487 (604)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhcc
Confidence 9999999999988877777766532221111221 112456667766666433 4444555566665552 23334455
Q ss_pred hCCcHHHHHHHhhcCChhHHHHHHHHHHHHhc
Q 000133 524 SADAVPALLWLLKNGSANGKEIAAKTLNHLIH 555 (2100)
Q Consensus 524 ~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~ 555 (2100)
+.|+++.+|..+....-..+..|..+|..+..
T Consensus 488 ksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~ 519 (604)
T KOG4500|consen 488 KSGGIKEKVSMFTKNHINMQNEALVALLSTES 519 (604)
T ss_pred ccccHHHHHHHHHHhhHHHhHHHHHHHHHHHH
Confidence 68888888888887777777777777766543
No 22
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.52 E-value=4.8e-08 Score=122.93 Aligned_cols=771 Identities=15% Similarity=0.123 Sum_probs=408.2
Q ss_pred CchHHHHHHHhcCCHHHHHHHHHHHHhhh-ccchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCccc
Q 000133 54 QAVPVLVSLLRSGSLAVKIQAATVLGSLC-KENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVG 132 (2100)
Q Consensus 54 g~v~~L~~lL~~~~~~v~~~aa~~L~~L~-~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~ 132 (2100)
..+..++++|.+.+.+|+..|.++++-+. |-++.+.+ ..+..|..-+-++....|-.+..+|...-.. .+..
T Consensus 47 kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le----~~ve~L~~~~~s~keq~rdissi~Lktvi~n-l~P~-- 119 (1233)
T KOG1824|consen 47 KVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLE----TIVENLCSNMLSGKEQLRDISSIGLKTVIAN-LPPS-- 119 (1233)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHH----HHHHHHhhhhccchhhhccHHHHHHHHHHhc-CCCc--
Confidence 46789999999999999999999999887 22222221 1233444444455556666666666644431 1111
Q ss_pred ccchhccCChHHHHHHhhccCCCcch---HHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHH
Q 000133 133 SKIFSTEGVVPVLWEQLKNGLKSGNV---VDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLL 209 (2100)
Q Consensus 133 ~~~~~~~g~vp~L~~lL~~~~~~~~~---v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L 209 (2100)
...+....+.+.+...+......... ++-.++..+..+-+...+.-.. .+.+.+..++.-+.++...++..|+.+|
T Consensus 120 ~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l 198 (1233)
T KOG1824|consen 120 SSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITAL 198 (1233)
T ss_pred cccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHH
Confidence 22245566677777776654322222 3333333333332211111010 2334455666666778888999999999
Q ss_pred HHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHh--CCChHHHHHhhcCCCcchh
Q 000133 210 ACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAG--SNGIPAMINATIAPSKEFM 287 (2100)
Q Consensus 210 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~--~g~i~~Lv~ll~~~~~e~~ 287 (2100)
+.++..-+ ...-.+.+..|++-|.........+.-..+|..++.. ....+.. ...+|.+.......
T Consensus 199 ~~la~~~~----~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~---ag~r~~~h~~~ivp~v~~y~~~~----- 266 (1233)
T KOG1824|consen 199 GHLASSCN----RDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQ---AGHRFGSHLDKIVPLVADYCNKI----- 266 (1233)
T ss_pred HHHHHhcC----HHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHH---hcchhhcccchhhHHHHHHhccc-----
Confidence 99986443 2333456777777777665555555666677776652 1112211 23466666666332
Q ss_pred hhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhc---ccc----CCCC--CCCchh
Q 000133 288 QGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYD---SKA----ESTK--PSDPLI 358 (2100)
Q Consensus 288 ~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~---~~~----~~~~--~~~~~~ 358 (2100)
...+.+++|++..++.-+-... |+...|.... .+...+..+. ... ++.. ..+...
T Consensus 267 -e~~dDELrE~~lQale~fl~rc-------------p~ei~p~~pe--i~~l~l~yisYDPNy~yd~~eDed~~~~ed~e 330 (1233)
T KOG1824|consen 267 -EEDDDELREYCLQALESFLRRC-------------PKEILPHVPE--IINLCLSYISYDPNYNYDTEEDEDAMFLEDEE 330 (1233)
T ss_pred -ccCcHHHHHHHHHHHHHHHHhC-------------hhhhcccchH--HHHHHHHHhccCCCCCCCCccchhhhhhhccc
Confidence 1234678888888876543311 1111111100 0111111111 000 0000 000000
Q ss_pred hHHHHHhhcC--CCCChHHHHHHHHHHHHH-hCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccch
Q 000133 359 VEQTLVNQFK--PRLPFLVQERTIEALASL-YGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLW 435 (2100)
Q Consensus 359 i~~~Lv~lL~--~~~~~~vq~~aa~aL~~L-~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~ 435 (2100)
-.+. -.-.. ..-++.||+.|+.|+..+ .+..+.-..+.+. .-|.++.-++...+.|+.....+...+-..-+...
T Consensus 331 Dde~-~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~-l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~ 408 (1233)
T KOG1824|consen 331 DDEQ-DDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQT-LGPALISRFKEREENVKADVFHAYIALLKQTRPVI 408 (1233)
T ss_pred cchh-ccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHH-hCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCc
Confidence 0000 00011 112467999999999988 5554443332221 23455666665555555554444444332211110
Q ss_pred H------HHHhCCc---------------HHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhcc
Q 000133 436 R------ALQGREG---------------IQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILE 494 (2100)
Q Consensus 436 ~------~i~~~g~---------------i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~ 494 (2100)
. .+. .|| ++.+-+.+++.+...+..+...|..+....++. -.-..-..+|.++.-|.
T Consensus 409 ~~~~d~d~~e-~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~-l~~~~~slvpgI~~~l~ 486 (1233)
T KOG1824|consen 409 EVLADNDAME-QGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGA-LAQHIPSLVPGIIYSLN 486 (1233)
T ss_pred ccccCchhhh-ccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcch-hhhcccccchhhhhhcC
Confidence 0 111 121 233333445555555555666666665433322 11112235777888887
Q ss_pred CC--CHHHHHHHHHHHHHHh-cCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCC---C-------CCc
Q 000133 495 SG--SAKAKEDSASILRNLC-NHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKS---D-------TAT 561 (2100)
Q Consensus 495 ~~--~~~vre~A~~aL~~L~-~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~---~-------~~~ 561 (2100)
+. +...+..+...|.++- .++++. -.-...-..|+++....++-+++-..|..+...++..- . +.-
T Consensus 487 DkSsss~~ki~~L~fl~~~L~s~~p~~-fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~ 565 (1233)
T KOG1824|consen 487 DKSSSSNLKIDALVFLYSALISHPPEV-FHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPY 565 (1233)
T ss_pred CccchHHHHHHHHHHHHHHHhcCChhh-cccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChh
Confidence 65 4556666666665544 333321 10011234566666667777777777777776666411 1 111
Q ss_pred HHH----HHHHhh--cCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHH-Hh-cCCCHHHHHHHHHHHHHHh
Q 000133 562 ISQ----LTALLT--SDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIK-IL-SSTKEETQAKSASALAGIF 633 (2100)
Q Consensus 562 i~~----L~~lL~--~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~-lL-~s~~~~~~~~Aa~aL~~L~ 633 (2100)
+.+ .+..|+ +.+.++|+.|+.|+|.+..... |..+.. +|.... ++ +-+++.+|-.|+.|+..++
T Consensus 566 v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fg--D~l~~e------L~~~L~il~eRl~nEiTRl~AvkAlt~Ia 637 (1233)
T KOG1824|consen 566 VKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFG--DFLGNE------LPRTLPILLERLGNEITRLTAVKALTLIA 637 (1233)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHh--hhhhhh------hHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 222 223333 5677899999999998765433 211111 333333 22 3367889999999999999
Q ss_pred cCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHH
Q 000133 634 ETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCA 713 (2100)
Q Consensus 634 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~a 713 (2100)
...-+.--......+++.|...++......+.....++-.|..+..+.-..... .-.+..+-.++..++-.+-+.|...
T Consensus 638 ~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~-e~vL~el~~Lisesdlhvt~~a~~~ 716 (1233)
T KOG1824|consen 638 MSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELL-EAVLVELPPLISESDLHVTQLAVAF 716 (1233)
T ss_pred hccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH-HHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 875443323444567888888886655555666666666664432221111011 1234444456666777788899999
Q ss_pred HHHHhcCcHHHHHHHHcCcHHHHHHHHccCChhH-HHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhccccc
Q 000133 714 LANLILDSEVSEKAIAEEIILPATRVLCEGTISG-KTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSV 792 (2100)
Q Consensus 714 L~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~~-~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v 792 (2100)
|..++...+...-.+.+.+++.++++++++.-.. ...+..-+...+...... +..+..++..+.....+.
T Consensus 717 L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~---------~l~y~~l~s~lt~PV~~~ 787 (1233)
T KOG1824|consen 717 LTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEP---------DLDYISLLSLLTAPVYEQ 787 (1233)
T ss_pred HHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCC---------CccHHHHHHHHcCCcccc
Confidence 9999888887777788999999999999987553 334444444333322222 223667777777765222
Q ss_pred c----hHhHHHHHHHHHHcCCCCCCCCcccceeeccCCCchhhhhhhccC--ChhHHHHHHHHHHHHhcCCcccchhccc
Q 000133 793 A----TSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADA--TPLLQDKAIEILSRLCRDQPAVLGDEVT 866 (2100)
Q Consensus 793 ~----~~~al~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~--~~~~~~~a~~~L~~L~~~~~~~~g~~~~ 866 (2100)
+ ..+|+..++.-...--. .-+-..+.....|+.-+... +..++..|.=.|.++ ||-+-
T Consensus 788 ~~~~l~kqa~~siA~cvA~Lt~--------~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGEl--------gr~~~ 851 (1233)
T KOG1824|consen 788 VTDGLHKQAYYSIAKCVAALTC--------ACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGEL--------GRRKD 851 (1233)
T ss_pred cccchhHHHHHHHHHHHHHHHH--------hccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhh--------ccCCC
Confidence 2 14555555532110000 00011122334444445533 455666666666666 44222
Q ss_pred cc-ccchHHHHHHHhhcCCcceecchhhHHHHHh
Q 000133 867 GA-SGCISSIARRVISCTNPKVKIGGAALLICAA 899 (2100)
Q Consensus 867 ~~-~~~~~~~~~~~l~s~~~~~r~~~~~~~~~~~ 899 (2100)
-. ..-....+...++|+.+++|..|+++++-++
T Consensus 852 ~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~ 885 (1233)
T KOG1824|consen 852 LSPQNELKDTIIEAFNSPSEDVKSAASYALGSLA 885 (1233)
T ss_pred CCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhh
Confidence 11 1223346666789999999999999988887
No 23
>PRK09687 putative lyase; Provisional
Probab=99.51 E-value=8.1e-13 Score=156.79 Aligned_cols=252 Identities=19% Similarity=0.105 Sum_probs=206.8
Q ss_pred CcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 000133 442 EGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRAC 521 (2100)
Q Consensus 442 g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~ 521 (2100)
-.++.|+.+|.+++..++..++++|..+.. +. .++.+..++.++++.+|..++++|+.|... +..
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~--~~---------~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~-~~~--- 87 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG--QD---------VFRLAIELCSSKNPIERDIGADILSQLGMA-KRC--- 87 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc--ch---------HHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-ccc---
Confidence 457889999999999999999999998863 22 678889999999999999999999999753 111
Q ss_pred HHhCCcHHHHHHH-hhcCChhHHHHHHHHHHHHhcCCC---CCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHH
Q 000133 522 VESADAVPALLWL-LKNGSANGKEIAAKTLNHLIHKSD---TATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDIL 597 (2100)
Q Consensus 522 i~~~g~i~~Lv~l-L~~~~~~~~~~Aa~aL~~L~~~~~---~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~ 597 (2100)
....++.|..+ +++.++.++..|+.+|++++.... +..++.+...+.++++.+|..+..+|+.+
T Consensus 88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~---------- 155 (280)
T PRK09687 88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVI---------- 155 (280)
T ss_pred --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc----------
Confidence 12356888877 677889999999999999965332 34567777888899999999999999832
Q ss_pred HHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 000133 598 REGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLS 677 (2100)
Q Consensus 598 ~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~ 677 (2100)
.+..+++.|+.+|+++++.+|..|+.+|+++...++ .+++.|+.++.+.+..++..|+.+|+.+-
T Consensus 156 ----~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~~-- 220 (280)
T PRK09687 156 ----NDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALRK-- 220 (280)
T ss_pred ----CCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHccC--
Confidence 234569999999999999999999999999954333 46888999999999999999999999862
Q ss_pred CchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHc-cCChhHHHHHHHHHH
Q 000133 678 VRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLC-EGTISGKTLAAAAIA 756 (2100)
Q Consensus 678 ~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~-~~~~~~~~~Aa~aL~ 756 (2100)
...+++.|++.+.+++ ++..++.||+++-. +..++.|.++++ .++..++..|.++|.
T Consensus 221 ----------~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~----------~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 221 ----------DKRVLSVLIKELKKGT--VGDLIIEAAGELGD----------KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred ----------ChhHHHHHHHHHcCCc--hHHHHHHHHHhcCC----------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 1358999999999876 67889999998764 468999999997 666669999998886
Q ss_pred H
Q 000133 757 R 757 (2100)
Q Consensus 757 ~ 757 (2100)
+
T Consensus 279 ~ 279 (280)
T PRK09687 279 R 279 (280)
T ss_pred c
Confidence 4
No 24
>PRK09687 putative lyase; Provisional
Probab=99.47 E-value=2.6e-12 Score=152.50 Aligned_cols=253 Identities=19% Similarity=0.119 Sum_probs=204.8
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHH
Q 000133 401 AKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAI 480 (2100)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i 480 (2100)
.++.|+.+|.+.+..+|..++.+|..+... ..++.+..+++++++.+|..++++|+.|.. ....
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~-----------~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~-~~~~---- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGGQ-----------DVFRLAIELCSSKNPIERDIGADILSQLGM-AKRC---- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCcc-----------hHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-Cccc----
Confidence 356788899999999999999999876532 567888899999999999999999999973 2111
Q ss_pred HhcCChHHHHHh-ccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC
Q 000133 481 TAAGGIPPLVQI-LESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT 559 (2100)
Q Consensus 481 ~~~g~i~~Lv~l-L~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~ 559 (2100)
....++.|..+ ++++++.+|..|+.+|++++...... ...+++.+...+.+.++.++..++.+|+++. ++
T Consensus 88 -~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~---~~ 158 (280)
T PRK09687 88 -QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN---DE 158 (280)
T ss_pred -hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC---CH
Confidence 12357788877 67889999999999999997532111 1224566778888889999999999998763 46
Q ss_pred CcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhh
Q 000133 560 ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDL 639 (2100)
Q Consensus 560 ~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~ 639 (2100)
.+++.|+.+|.+.++.+|..|..+||.+.. ....+++.|+.+|.+.++.+|..|+++|+++...
T Consensus 159 ~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~------------~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~---- 222 (280)
T PRK09687 159 AAIPLLINLLKDPNGDVRNWAAFALNSNKY------------DNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDK---- 222 (280)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhcCCC------------CCHHHHHHHHHHhcCCChHHHHHHHHHHHccCCh----
Confidence 799999999999999999999999996511 1234588999999999999999999999986532
Q ss_pred HHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhC-CCCHHHHHHHHHHHH
Q 000133 640 RESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAG-SPVLEVAEQATCALA 715 (2100)
Q Consensus 640 ~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~-~~~~evr~~aa~aL~ 715 (2100)
.++|+|++.+.+++ ++..++.+|+.+.. ..++|.|.+++. ++++.++..+.++|.
T Consensus 223 -------~av~~Li~~L~~~~--~~~~a~~ALg~ig~------------~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 223 -------RVLSVLIKELKKGT--VGDLIIEAAGELGD------------KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred -------hHHHHHHHHHcCCc--hHHHHHHHHHhcCC------------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 57999999999877 57789999998832 258999999996 889999999988875
No 25
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=3.4e-12 Score=156.54 Aligned_cols=383 Identities=15% Similarity=0.096 Sum_probs=271.9
Q ss_pred hHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHH
Q 000133 359 VEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRAL 438 (2100)
Q Consensus 359 i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i 438 (2100)
++..+..-+. ++++.+|+....|+..+....+.. ......+.+.+++...+..-+..+...++.+..+.. ...+
T Consensus 97 ~~~~~~~~~~-tps~~~q~~~~~~l~~~~~~~~~~---~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~~~ 170 (569)
T KOG1242|consen 97 IIEILLEELD-TPSKSVQRAVSTCLPPLVVLSKGL---SGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG--IESL 170 (569)
T ss_pred HHHHHHHhcC-CCcHHHHHHHHHHhhhHHHHhhcc---CHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--Hhhh
Confidence 4444444443 445678999999998773221111 112235567888888889999999999999998754 3455
Q ss_pred HhCCcHHHHHHhhCCCCHHHHHH-HHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChh
Q 000133 439 QGREGIQLLISLLGLSSEQQQEC-SVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSED 517 (2100)
Q Consensus 439 ~~~g~i~~Lv~lL~s~~~~v~~~-A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~ 517 (2100)
.+.+.+..|-..+++.+...+++ +..+.-... .+-..-.+.+-...+|.++.-+.+..+.+|+.|..+...+...-+.
T Consensus 171 ~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~-~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~ 249 (569)
T KOG1242|consen 171 KEFGFLDNLSKAIIDKKSALNREAALLAFEAAQ-GNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA 249 (569)
T ss_pred hhhhHHHHHHHHhcccchhhcHHHHHHHHHHHH-HhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc
Confidence 66778888888888876655554 221111111 1111112222223455566666677889998887777666543222
Q ss_pred hHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC-------CCcHHHHHHHhhcCCcchHHHHHHHHHHHHhc
Q 000133 518 IRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD-------TATISQLTALLTSDLPESKVYVLDALKSMLSV 590 (2100)
Q Consensus 518 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~-------~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~ 590 (2100)
..- .-.+|+++.-+.+..|+.+..+...|+.|+...+ +..+|.+.+.|.+.++++|..+.+|+-.++.+
T Consensus 250 ~aV----K~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~sv 325 (569)
T KOG1242|consen 250 YAV----KLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSV 325 (569)
T ss_pred chh----hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 110 1245677766666699999999999999988663 47899999999999999999999999999999
Q ss_pred cCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHH
Q 000133 591 VSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRC 670 (2100)
Q Consensus 591 ~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~a 670 (2100)
..+++ ++.. +|.|++.+.+++..+.+ +...|..-... +..+....+-.+|.|.+.+..++..+.++++.+
T Consensus 326 idN~d-I~~~------ip~Lld~l~dp~~~~~e-~~~~L~~ttFV--~~V~~psLalmvpiL~R~l~eRst~~kr~t~~I 395 (569)
T KOG1242|consen 326 IDNPD-IQKI------IPTLLDALADPSCYTPE-CLDSLGATTFV--AEVDAPSLALMVPILKRGLAERSTSIKRKTAII 395 (569)
T ss_pred hccHH-HHHH------HHHHHHHhcCcccchHH-HHHhhcceeee--eeecchhHHHHHHHHHHHHhhccchhhhhHHHH
Confidence 98888 4433 89999999888755543 23333332222 234445556689999999999999999999999
Q ss_pred HHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCChh-HHH
Q 000133 671 LAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTIS-GKT 749 (2100)
Q Consensus 671 L~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~-~~~ 749 (2100)
+.|++.-.++.+...-.-...+|.|-..+.++.||+|..++.||+.+..+-..... ++.+|.+.+.++++... .+.
T Consensus 396 idNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f---~d~~p~l~e~~~~~k~~~~~~ 472 (569)
T KOG1242|consen 396 IDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF---DDLIPELSETLTSEKSLVDRS 472 (569)
T ss_pred HHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc---cccccHHHHhhccchhhhhhH
Confidence 99999887777777555555666666777788999999999999988744222211 78999999999999887 588
Q ss_pred HHHHHHHHHHhcCccc
Q 000133 750 LAAAAIARLLHSRKID 765 (2100)
Q Consensus 750 ~Aa~aL~~l~~~~~~~ 765 (2100)
++++.|.++++.....
T Consensus 473 g~aq~l~evl~~~~v~ 488 (569)
T KOG1242|consen 473 GAAQDLSEVLAGLGVE 488 (569)
T ss_pred HHhhhHHHHHhcccch
Confidence 9999999999877764
No 26
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.43 E-value=4.3e-10 Score=137.62 Aligned_cols=493 Identities=11% Similarity=0.060 Sum_probs=309.3
Q ss_pred HccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCC-HHHHHHHHHHHHHhhcCChHhHHHHHhCCCh
Q 000133 194 LTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNE-ASVRAEAAGALKSLSDHCKDARREIAGSNGI 272 (2100)
Q Consensus 194 L~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i 272 (2100)
+-+.+++....+..-..+++.++.+....+++.|+++.|+.+++..++ .+.+...+.++..+..+.......+.+.+-+
T Consensus 18 L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~l 97 (678)
T KOG1293|consen 18 LLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIEL 97 (678)
T ss_pred hhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhH
Confidence 345566666667777778888888888889999999999999987554 5677788888888888777788889999999
Q ss_pred HHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCC
Q 000133 273 PAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTK 352 (2100)
Q Consensus 273 ~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~ 352 (2100)
+.|+.++..++ ...+.+...++++++-.-.++. ...+.
T Consensus 98 l~Ll~LLs~sD--------~~~~le~~l~~lR~Ifet~~~q-------------~~~~s--------------------- 135 (678)
T KOG1293|consen 98 LKLLQLLSESD--------SLNVLEKTLRCLRTIFETSKYQ-------------DKKMS--------------------- 135 (678)
T ss_pred HHHHHHhcCcc--------hHhHHHHHHHHHHHHHhccccc-------------ccchh---------------------
Confidence 99999998764 2567788888888776532110 00000
Q ss_pred CCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHH---Hhhc
Q 000133 353 PSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALL---KLCN 429 (2100)
Q Consensus 353 ~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~---~L~~ 429 (2100)
.....+++.+..++..... .+.+.-+.-.+.+.+.++.+..+.+.|..+.+.-++..-+...|..|..+++ ++..
T Consensus 136 -~~~~sIi~~~s~l~s~~lk-~~~~l~~~~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~ 213 (678)
T KOG1293|consen 136 -LHLKSIIVKFSLLYSIELK-YISRLDVSRAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILR 213 (678)
T ss_pred -hhHHHHHHHHHHHHhhhhh-hhhhhhhhhhccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeee
Confidence 1112333334333331211 1112112222223444556667778888888877777778899999999999 7777
Q ss_pred cCccchHH----HHhCCcHH--HHHHhhCCCCHHHHHHHHHHHHHhccCCcc----cHHHHHhcCChHHH-----HHhcc
Q 000133 430 NEGSLWRA----LQGREGIQ--LLISLLGLSSEQQQECSVALLCLLSNENDD----SKWAITAAGGIPPL-----VQILE 494 (2100)
Q Consensus 430 ~~~~~~~~----i~~~g~i~--~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~----~~~~i~~~g~i~~L-----v~lL~ 494 (2100)
+++..... +.+.|..+ .+-+++++++...+..++.++.++...+-+ .++.+.-..|=..+ +.++.
T Consensus 214 Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~ 293 (678)
T KOG1293|consen 214 NNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMN 293 (678)
T ss_pred cCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeec
Confidence 76654332 23344444 455678888888888888888887654311 12222222221112 22223
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCc
Q 000133 495 SGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLP 574 (2100)
Q Consensus 495 ~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~ 574 (2100)
++-...-..++...+.++..-...+....+...++.+++++..+.. .++. .+
T Consensus 294 ~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~s----l~a~------------------------~~ 345 (678)
T KOG1293|consen 294 DPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICAS----LAAS------------------------DE 345 (678)
T ss_pred CCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHH----Hhhc------------------------ch
Confidence 3322222233444444443223344444456667777777654211 0000 00
Q ss_pred chHHHHHHH---HHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHH
Q 000133 575 ESKVYVLDA---LKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWS 651 (2100)
Q Consensus 575 ~~~~~a~~a---L~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~ 651 (2100)
+.+.-++.- +..++..... + .+..+-.......+-......+.....+|+.++.++++.-...+..+....+..+
T Consensus 346 ~~~~i~l~e~~i~~~~~~~~~i-~-~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~p 423 (678)
T KOG1293|consen 346 KYRLILLNETLILNHLEYGLEI-S-LKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQP 423 (678)
T ss_pred hhhHHHhhhhhhhhhhhhhcch-h-HHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHH
Confidence 110000000 0000000000 0 1111111101112222334567788888999999988876656666677789999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCc--HHHHHHHH
Q 000133 652 VMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDS--EVSEKAIA 729 (2100)
Q Consensus 652 Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~--~~~~~~v~ 729 (2100)
|+.++.+++..++..+.++|+|++...+ ..+..+++.|+++.|.+++.++++.+|..+.|+|.+++.+. ....+...
T Consensus 424 lvqll~dp~~~i~~~~lgai~NlVmefs-~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ 502 (678)
T KOG1293|consen 424 LVQLLMDPEIMIMGITLGAICNLVMEFS-NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLA 502 (678)
T ss_pred HHHHhhCcchhHHHHHHHHHHHHHhhcc-cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 9999999999999999999999988765 56667999999999999999999999999999999999553 34444444
Q ss_pred cCcHHHHHHHHccCChhHHHHHHHHHHHHHhc
Q 000133 730 EEIILPATRVLCEGTISGKTLAAAAIARLLHS 761 (2100)
Q Consensus 730 ~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~ 761 (2100)
.--...+..+..+++..+++++.+-|.|+...
T Consensus 503 ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 503 KIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 44455666777788888999999999998854
No 27
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.42 E-value=1.6e-11 Score=170.13 Aligned_cols=278 Identities=19% Similarity=0.145 Sum_probs=223.9
Q ss_pred ccCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcchhhhhhhhhcCChHHHHHhhccCChhhHHHHHHHHHHhhcCCchhhH
Q 000133 1229 AFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRAL 1308 (2100)
Q Consensus 1229 ~~~al~~Li~~L~~~~~~~r~~Aa~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~La~~~~~~~~ 1308 (2100)
....++.|+..|.+++...|..|+.+|..+ +.+.+++.|+.+|++.+..++..|+.+|.++...
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~----------~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~------ 682 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTET----------TPPGFGPALVAALGDGAAAVRRAAAEGLRELVEV------ 682 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhh----------cchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc------
Confidence 345788999999999999999999999875 3566899999999999999999999999988621
Q ss_pred HHHhhhcchhHHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHhhcChHHHHHHHhcCCchHHHHHHHHHHHhccc
Q 000133 1309 AVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDD 1388 (2100)
Q Consensus 1309 ~~~~v~~gal~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~~~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~ 1388 (2100)
....+.|...|.+ ++..++..+...|..+.. +....|+..|.++++.+|..|+.+|..+.
T Consensus 683 ------~~~~~~L~~~L~~-~d~~VR~~A~~aL~~~~~-----------~~~~~l~~~L~D~d~~VR~~Av~aL~~~~-- 742 (897)
T PRK13800 683 ------LPPAPALRDHLGS-PDPVVRAAALDVLRALRA-----------GDAALFAAALGDPDHRVRIEAVRALVSVD-- 742 (897)
T ss_pred ------cCchHHHHHHhcC-CCHHHHHHHHHHHHhhcc-----------CCHHHHHHHhcCCCHHHHHHHHHHHhccc--
Confidence 1234567777776 578999999998887631 12346788999999999999999998863
Q ss_pred HHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCchhhHHHHhcCcHHHHHHHhccCChhHHHHHHHHHHHH
Q 000133 1389 EQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRIL 1468 (2100)
Q Consensus 1389 ~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k~~i~~~~~i~~lv~~L~~~~~~~~~~aa~lL~~L 1468 (2100)
..+.|..++.++++.||..+..+|+.+....+ ..++.+..++.+++..+|..++..|..+
T Consensus 743 -----------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~ 802 (897)
T PRK13800 743 -----------DVESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAEL 802 (897)
T ss_pred -----------CcHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 23557888999999999999999999987641 1378889999999999999888776444
Q ss_pred HhccCCcccccccCchHHHHHHhccCCCCchhHhHHHHHHHHhhcCCCcccccccccCCChHhhhhccCCCCHHHHHHHH
Q 000133 1469 TNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAA 1548 (2100)
Q Consensus 1469 s~~~~~~~~~~~~~~v~~Ll~ll~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~~~~~~~~l~~Lv~~L~~~~~~vq~~a~ 1548 (2100)
.... .....++..+.+++ +.++..|.++|..+ .....+++|+.+|++++..||..++
T Consensus 803 g~~~---------~~~~~l~~aL~d~d--~~VR~~Aa~aL~~l------------~~~~a~~~L~~~L~D~~~~VR~~A~ 859 (897)
T PRK13800 803 GCPP---------DDVAAATAALRASA--WQVRQGAARALAGA------------AADVAVPALVEALTDPHLDVRKAAV 859 (897)
T ss_pred CCcc---------hhHHHHHHHhcCCC--hHHHHHHHHHHHhc------------cccchHHHHHHHhcCCCHHHHHHHH
Confidence 3221 12366788888766 88999999999874 4566789999999999999999999
Q ss_pred HHHHHhhccccccccccccCchHHHHHHhccCCHHHHHHHHHHHHH
Q 000133 1549 ELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVS 1594 (2100)
Q Consensus 1549 ~aL~~l~~~~~~~~~l~~~g~i~~Lv~lL~s~~~~vr~~Al~AL~~ 1594 (2100)
.+|+++..+ ..+.+.|...+++.+.+||..|.+||..
T Consensus 860 ~aL~~~~~~---------~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 860 LALTRWPGD---------PAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHhccCCC---------HHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 999997332 2457889999999999999999999963
No 28
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.40 E-value=2.3e-11 Score=168.68 Aligned_cols=276 Identities=17% Similarity=0.104 Sum_probs=224.7
Q ss_pred cccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHH
Q 000133 399 SEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKW 478 (2100)
Q Consensus 399 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~ 478 (2100)
...++.|+..|.++++.+|+.|+..|..+.. .+.++.|+.+|+++++.++..|+.+|..+....+
T Consensus 620 ~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~---- 684 (897)
T PRK13800 620 APSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP---- 684 (897)
T ss_pred chhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC----
Confidence 3456788999999999999999999988643 2578999999999999999999999998853111
Q ss_pred HHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC
Q 000133 479 AITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD 558 (2100)
Q Consensus 479 ~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~ 558 (2100)
..+.|...|.++++.+|..|+.+|..+... -...|+..|++.++.++..|+.+|..+-
T Consensus 685 ------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~------------~~~~l~~~L~D~d~~VR~~Av~aL~~~~---- 742 (897)
T PRK13800 685 ------PAPALRDHLGSPDPVVRAAALDVLRALRAG------------DAALFAAALGDPDHRVRIEAVRALVSVD---- 742 (897)
T ss_pred ------chHHHHHHhcCCCHHHHHHHHHHHHhhccC------------CHHHHHHHhcCCCHHHHHHHHHHHhccc----
Confidence 236788889999999999999999887532 2346788899999999999999998762
Q ss_pred CCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChh
Q 000133 559 TATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKD 638 (2100)
Q Consensus 559 ~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~ 638 (2100)
..+.|..++.++++++|..+..+|+.+... ...+++.|..+++++++.+|..|+.+|.++... +
T Consensus 743 --~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~------------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~-~- 806 (897)
T PRK13800 743 --DVESVAGAATDENREVRIAVAKGLATLGAG------------GAPAGDAVRALTGDPDPLVRAAALAALAELGCP-P- 806 (897)
T ss_pred --CcHHHHHHhcCCCHHHHHHHHHHHHHhccc------------cchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-c-
Confidence 245688889999999999999999855321 123478899999999999999999999998653 1
Q ss_pred hHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 000133 639 LRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLI 718 (2100)
Q Consensus 639 ~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~ 718 (2100)
..++.+...|.+++..++..|+.+|+.+.. ...++.|+.++.++++.||..|+.+|..+-
T Consensus 807 --------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~------------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~ 866 (897)
T PRK13800 807 --------DDVAAATAALRASAWQVRQGAARALAGAAA------------DVAVPALVEALTDPHLDVRKAAVLALTRWP 866 (897)
T ss_pred --------hhHHHHHHHhcCCChHHHHHHHHHHHhccc------------cchHHHHHHHhcCCCHHHHHHHHHHHhccC
Confidence 124668888999999999999999988721 356799999999999999999999999862
Q ss_pred cCcHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHH
Q 000133 719 LDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIA 756 (2100)
Q Consensus 719 ~~~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~ 756 (2100)
. + +...+.|...+++++..+|..|+++|.
T Consensus 867 ~-~--------~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 867 G-D--------PAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred C-C--------HHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 2 1 245778889999999999999999985
No 29
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.35 E-value=2e-09 Score=139.49 Aligned_cols=368 Identities=16% Similarity=0.140 Sum_probs=272.6
Q ss_pred HHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCC
Q 000133 363 LVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGRE 442 (2100)
Q Consensus 363 Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g 442 (2100)
+...|...+.+.+ ..++..|..+......... ..+..+.|...|.++++.+|..+++.|.++..++....+.+.+.+
T Consensus 43 lf~~L~~~~~e~v-~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~ 119 (503)
T PF10508_consen 43 LFDCLNTSNREQV-ELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNE 119 (503)
T ss_pred HHHHHhhcChHHH-HHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence 5555555544443 4455666666443322222 345677889999999999999999999999988777677778889
Q ss_pred cHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 000133 443 GIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACV 522 (2100)
Q Consensus 443 ~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i 522 (2100)
.++.++.++.+++..+...|..+|.+++. ++.....+...+.++.|.+++...++.+|-++..++.+++..+++....+
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~-~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~ 198 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLAS-HPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAV 198 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhC-CchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999999999999999999999996 66777778899999999999998889999999999999999999999999
Q ss_pred HhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCC-------CCCcHHHHHHHhhcCCcchHHH------HHHHHHHHHh
Q 000133 523 ESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKS-------DTATISQLTALLTSDLPESKVY------VLDALKSMLS 589 (2100)
Q Consensus 523 ~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~-------~~~~i~~L~~lL~~~~~~~~~~------a~~aL~~l~~ 589 (2100)
.+.|.++.++..+++.+.-++..+..+|..|+... ..+.++.|..++.+...+.+.. .....|+++.
T Consensus 199 ~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~ 278 (503)
T PF10508_consen 199 VNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLAR 278 (503)
T ss_pred HhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHh
Confidence 99999999999999988889999999999999854 2478899999987654333111 2244444544
Q ss_pred ccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHH-Hhc-CchHHHHH----hhcCCCHHH
Q 000133 590 VVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESS-IAV-KTLWSVMK----LLDVGSECI 663 (2100)
Q Consensus 590 ~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~-~~~-g~v~~Lv~----lL~~~~~~v 663 (2100)
. ....... .. ...+..+.+++.+.++..+..|..+++.++.. .+....+ ... +.++..++ ...+...++
T Consensus 279 ~-~~~~v~~-~~--p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~l 353 (503)
T PF10508_consen 279 V-SPQEVLE-LY--PAFLERLFSMLESQDPTIREVAFDTLGQIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTEL 353 (503)
T ss_pred c-ChHHHHH-HH--HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhcCCchHH
Confidence 4 2222111 11 12244455566788999999999999999976 4544444 332 34444444 446677789
Q ss_pred HHHHHHHHHHHhcCCch--hHHHH--------HHhCCChH-HHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHH-HcC
Q 000133 664 LVEASRCLAAIFLSVRE--NREVA--------AVARDALS-PLVVLAGSPVLEVAEQATCALANLILDSEVSEKAI-AEE 731 (2100)
Q Consensus 664 ~~~aa~aL~~L~~~~~~--~~~~~--------~~~~~~l~-~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v-~~~ 731 (2100)
+..+..++.++....++ .++.. ....+... .++.+++.|=+|+|..+...|..|+..+-....+. .+|
T Consensus 354 k~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~g 433 (503)
T PF10508_consen 354 KLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPG 433 (503)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCcc
Confidence 99999999999654443 22221 22334444 77899999999999999999999998877666665 456
Q ss_pred cHHHHHHH
Q 000133 732 IILPATRV 739 (2100)
Q Consensus 732 ~v~~L~~l 739 (2100)
.++.|+.-
T Consensus 434 fie~lldr 441 (503)
T PF10508_consen 434 FIEYLLDR 441 (503)
T ss_pred HHhhhcCC
Confidence 66665543
No 30
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.33 E-value=1e-09 Score=146.44 Aligned_cols=495 Identities=16% Similarity=0.161 Sum_probs=340.4
Q ss_pred CChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhcCCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHH
Q 000133 23 SSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLG 102 (2100)
Q Consensus 23 ~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~ 102 (2100)
.+..+|.+++..|..+.-.+... ..+.+.++.++.+.+...|.-+=-++..+...++.-..+ ++..+.+
T Consensus 18 ~~~~~~~~~l~kli~~~~~G~~~-------~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l----~~n~l~k 86 (526)
T PF01602_consen 18 IDISKKKEALKKLIYLMMLGYDI-------SFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL----IINSLQK 86 (526)
T ss_dssp THHHHHHHHHHHHHHHHHTT----------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH----HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCC-------chHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH----HHHHHHH
Confidence 45678888999999887766533 246788899999999999888877788777555441111 5778888
Q ss_pred hhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCChhhHHHHH
Q 000133 103 LLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATV 182 (2100)
Q Consensus 103 lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~ 182 (2100)
-|.++++..|..|+.+|.++.. .. + -.-++|.+..++.+ ..+.|+..|+.++..+....++. +.
T Consensus 87 dl~~~n~~~~~lAL~~l~~i~~----~~-----~-~~~l~~~v~~ll~~---~~~~VRk~A~~~l~~i~~~~p~~---~~ 150 (526)
T PF01602_consen 87 DLNSPNPYIRGLALRTLSNIRT----PE-----M-AEPLIPDVIKLLSD---PSPYVRKKAALALLKIYRKDPDL---VE 150 (526)
T ss_dssp HHCSSSHHHHHHHHHHHHHH-S----HH-----H-HHHHHHHHHHHHHS---SSHHHHHHHHHHHHHHHHHCHCC---HH
T ss_pred hhcCCCHHHHHHHHhhhhhhcc----cc-----h-hhHHHHHHHHHhcC---CchHHHHHHHHHHHHHhccCHHH---HH
Confidence 9999999999999999999886 22 1 23357777777775 45679999999999987554433 22
Q ss_pred hcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHh
Q 000133 183 QAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDA 262 (2100)
Q Consensus 183 ~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~ 262 (2100)
.. .++.+.+++.++++.++..|+.++..+ ...++... -.-...+..|.+++... ++-.+......|..++...+..
T Consensus 151 ~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-~~~~~~~~~L~~~l~~~-~~~~q~~il~~l~~~~~~~~~~ 226 (526)
T PF01602_consen 151 DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-SLIPKLIRILCQLLSDP-DPWLQIKILRLLRRYAPMEPED 226 (526)
T ss_dssp GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-THHHHHHHHHHHHHTCC-SHHHHHHHHHHHTTSTSSSHHH
T ss_pred HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-hhHHHHHHHhhhccccc-chHHHHHHHHHHHhcccCChhh
Confidence 22 689999999999999999999999777 22221111 12233455555555554 4678999999999998766554
Q ss_pred HHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHH
Q 000133 263 RREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALM 342 (2100)
Q Consensus 263 ~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~ 342 (2100)
... ...++.+..++.+. ...++..++.++.++..... .
T Consensus 227 ~~~---~~~i~~l~~~l~s~---------~~~V~~e~~~~i~~l~~~~~------------------~------------ 264 (526)
T PF01602_consen 227 ADK---NRIIEPLLNLLQSS---------SPSVVYEAIRLIIKLSPSPE------------------L------------ 264 (526)
T ss_dssp HHH---HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHSSSHH------------------H------------
T ss_pred hhH---HHHHHHHHHHhhcc---------ccHHHHHHHHHHHHhhcchH------------------H------------
Confidence 411 23466777777532 36777888888776553210 0
Q ss_pred HhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhc-CCCHHHHHHHH
Q 000133 343 IYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLIT-MATNEVQEELV 421 (2100)
Q Consensus 343 ~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~-~~~~~v~~~A~ 421 (2100)
...+.+.|.+++. .++..+|..+..+|..+.... ...+. .....+..+. +++..++..++
T Consensus 265 -------------~~~~~~~L~~lL~-s~~~nvr~~~L~~L~~l~~~~--~~~v~---~~~~~~~~l~~~~d~~Ir~~~l 325 (526)
T PF01602_consen 265 -------------LQKAINPLIKLLS-SSDPNVRYIALDSLSQLAQSN--PPAVF---NQSLILFFLLYDDDPSIRKKAL 325 (526)
T ss_dssp -------------HHHHHHHHHHHHT-SSSHHHHHHHHHHHHHHCCHC--HHHHG---THHHHHHHHHCSSSHHHHHHHH
T ss_pred -------------HHhhHHHHHHHhh-cccchhehhHHHHHHHhhccc--chhhh---hhhhhhheecCCCChhHHHHHH
Confidence 0135566778887 445557999999999884432 22222 1222233444 88999999999
Q ss_pred HHHHHhhccCccchHHHHhCCcHHHHHHhh-CCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHH
Q 000133 422 RALLKLCNNEGSLWRALQGREGIQLLISLL-GLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKA 500 (2100)
Q Consensus 422 ~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL-~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v 500 (2100)
..|..++.. .+.. ..++.|...+ ..++++++..++..++.++...+..... .+..+++++..++..+
T Consensus 326 ~lL~~l~~~--~n~~-----~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~-----~v~~l~~ll~~~~~~~ 393 (526)
T PF01602_consen 326 DLLYKLANE--SNVK-----EILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEW-----YVDTLLKLLEISGDYV 393 (526)
T ss_dssp HHHHHH--H--HHHH-----HHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHH-----HHHHHHHHHHCTGGGC
T ss_pred HHHhhcccc--cchh-----hHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHH-----HHHHHHHhhhhccccc
Confidence 999999975 2222 2567788888 5558889999999999998655444333 3578999999887788
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhc-CChhHHHHHHHHHHHHhcCCCC-----CcHHHHHHHhhcCCc
Q 000133 501 KEDSASILRNLCNHSEDIRACVESADAVPALLWLLKN-GSANGKEIAAKTLNHLIHKSDT-----ATISQLTALLTSDLP 574 (2100)
Q Consensus 501 re~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~Aa~aL~~L~~~~~~-----~~i~~L~~lL~~~~~ 574 (2100)
...+...+.++....++.+.. .+..|++.+.+ .++..+..++|.++..+...+. ..+..+.......++
T Consensus 394 ~~~~~~~i~~ll~~~~~~~~~-----~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~ 468 (526)
T PF01602_consen 394 SNEIINVIRDLLSNNPELREK-----ILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESP 468 (526)
T ss_dssp HCHHHHHHHHHHHHSTTTHHH-----HHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHH
T ss_pred cchHHHHHHHHhhcChhhhHH-----HHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccH
Confidence 888888899988766666654 47888988887 6778999999999988765443 334445555666777
Q ss_pred chHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhc--CCCHHHHHHHHHHHHHH
Q 000133 575 ESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILS--STKEETQAKSASALAGI 632 (2100)
Q Consensus 575 ~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~--s~~~~~~~~Aa~aL~~L 632 (2100)
++|.....++..+....+..+. +.. .++.+..+.. +.++++|..|...+.=+
T Consensus 469 ~vk~~ilt~~~Kl~~~~~~~~~-~~~-----i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 469 EVKLQILTALAKLFKRNPENEV-QNE-----ILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HHHHHHHHHHHHHHHHSCSTTH-HHH-----HHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCchhh-HHH-----HHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 8999999999888776554331 112 2556666777 78999999999876544
No 31
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.29 E-value=1.1e-08 Score=132.67 Aligned_cols=390 Identities=15% Similarity=0.154 Sum_probs=276.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccch
Q 000133 57 PVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIF 136 (2100)
Q Consensus 57 ~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~ 136 (2100)
+.+...|++.+.+.-..++.+|..+-...... ....+..+.|...|.++++.+|..++.+|.++... .......+
T Consensus 41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~--~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~---~~~~~~~~ 115 (503)
T PF10508_consen 41 PVLFDCLNTSNREQVELICDILKRLLSALSPD--SLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARH---SEGAAQLL 115 (503)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhccCHH--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC---CHHHHHHh
Confidence 34778888887776677777787766433222 22456789999999999999999999999998862 22224557
Q ss_pred hccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcC
Q 000133 137 STEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEED 216 (2100)
Q Consensus 137 ~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~ 216 (2100)
.+.++++.++..+.. .+..+...|..+|.+++....+. ..+++.+.++.|..++..+++.+|..+..++.+++..+
T Consensus 116 ~~~~l~~~i~~~L~~---~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S 191 (503)
T PF10508_consen 116 VDNELLPLIIQCLRD---PDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHS 191 (503)
T ss_pred cCccHHHHHHHHHcC---CcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcC
Confidence 789999999999976 44558889999999999766544 55888888999999999989999999999999999888
Q ss_pred cchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHH
Q 000133 217 VSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQ 296 (2100)
Q Consensus 217 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~ 296 (2100)
+.....+.+.|.++.+++.+.+ +|.=++.+|+.+|..|+. .+++.+.+.+.|.++.|...+.....+. + . ..+.
T Consensus 192 ~~~~~~~~~sgll~~ll~eL~~-dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp-~--~-~~~~ 265 (503)
T PF10508_consen 192 PEAAEAVVNSGLLDLLLKELDS-DDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDP-R--L-SSLL 265 (503)
T ss_pred HHHHHHHHhccHHHHHHHHhcC-ccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCC-c--c-cchh
Confidence 8888888999999999999998 777899999999999999 7889999999999999999997653110 0 0 0000
Q ss_pred HHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHH
Q 000133 297 ENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQ 376 (2100)
Q Consensus 297 ~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq 376 (2100)
- .|.+
T Consensus 266 l------------------------------------~g~~--------------------------------------- 270 (503)
T PF10508_consen 266 L------------------------------------PGRM--------------------------------------- 270 (503)
T ss_pred h------------------------------------hhHH---------------------------------------
Confidence 0 0000
Q ss_pred HHHHHHHHHHhCC-C-ccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHH-HhCC-cH----HHHH
Q 000133 377 ERTIEALASLYGN-P-LLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRAL-QGRE-GI----QLLI 448 (2100)
Q Consensus 377 ~~aa~aL~~L~~~-~-~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i-~~~g-~i----~~Lv 448 (2100)
...++++.. | ..... -+..+..+..++.+.|+..+..|..+++.++..... +..+ ...+ .+ ...-
T Consensus 271 ----~f~g~la~~~~~~v~~~--~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G-~~~L~~~~~~~~~~~l~~~~ 343 (503)
T PF10508_consen 271 ----KFFGNLARVSPQEVLEL--YPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEG-KQLLLQKQGPAMKHVLKAIG 343 (503)
T ss_pred ----HHHHHHHhcChHHHHHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHH-HHHHHhhcchHHHHHHHHHH
Confidence 011111110 0 00000 012344567788899999999999999999977544 4444 3333 33 4444
Q ss_pred HhhCCCCHHHHHHHHHHHHHhccCCcc-c----------HHHHHhcCChH-HHHHhccCCCHHHHHHHHHHHHHHhcCCh
Q 000133 449 SLLGLSSEQQQECSVALLCLLSNENDD-S----------KWAITAAGGIP-PLVQILESGSAKAKEDSASILRNLCNHSE 516 (2100)
Q Consensus 449 ~lL~s~~~~v~~~A~~aL~nLs~~~~~-~----------~~~i~~~g~i~-~Lv~lL~~~~~~vre~A~~aL~~L~~~~~ 516 (2100)
...++...+++..+..+|.++.....+ . +......+... .++.+++.+=+++|..+...|..|+.+..
T Consensus 344 ~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~W 423 (503)
T PF10508_consen 344 DAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPW 423 (503)
T ss_pred HHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHH
Confidence 455667889999999999999322222 1 11222333344 66777877779999999999999999855
Q ss_pred hhHHHHHhCCcHHHHHHHhhcCChhHH
Q 000133 517 DIRACVESADAVPALLWLLKNGSANGK 543 (2100)
Q Consensus 517 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~ 543 (2100)
..+..+...|.++.|++--...+...+
T Consensus 424 g~~~i~~~~gfie~lldr~~E~~K~~k 450 (503)
T PF10508_consen 424 GQREICSSPGFIEYLLDRSTETTKEGK 450 (503)
T ss_pred HHHHHHhCccHHhhhcCCCCCCCHHHH
Confidence 556555556666666554333343333
No 32
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=3.2e-07 Score=114.20 Aligned_cols=766 Identities=13% Similarity=0.073 Sum_probs=397.7
Q ss_pred CCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhcC--CHHHHHHHHHHHHh-hh-ccchhhHHHHhc-CC
Q 000133 22 SSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSG--SLAVKIQAATVLGS-LC-KENELRVKVLLG-GC 96 (2100)
Q Consensus 22 ~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~~--~~~v~~~aa~~L~~-L~-~~~~~~~~i~~~-g~ 96 (2100)
|.+..++..|-..|..++...= .+.+..|...|.+. +...|+-|.-.|.+ |+ ++++.+....+. -.
T Consensus 12 SpD~n~~~~Ae~~l~~~~~~nf---------~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~ 82 (859)
T KOG1241|consen 12 SPDQNVRKRAEKQLEQAQSQNF---------PQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQ 82 (859)
T ss_pred CCCcchHHHHHHHHHHHHhccH---------HHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHc
Confidence 4455666777777776664211 12334445555543 33555555556655 44 344333322211 01
Q ss_pred h---------HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhcc-CCCcc-hHHHHHHH
Q 000133 97 I---------PPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNG-LKSGN-VVDNLLTG 165 (2100)
Q Consensus 97 i---------~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~-~~~~~-~v~~~a~~ 165 (2100)
+ .-+++-|.+..+.....|+.++..++.-. ...+.-|.|+..|.+. ....+ .+++..+.
T Consensus 83 l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~E----------lP~n~wp~li~~lv~nv~~~~~~~~k~~sle 152 (859)
T KOG1241|consen 83 LPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIE----------LPQNQWPELIVTLVSNVGEEQASMVKESSLE 152 (859)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhh----------CchhhCHHHHHHHHHhcccccchHHHHHHHH
Confidence 1 12344455566666667777777777622 2345567777777553 22222 37888999
Q ss_pred HHHHhccCChhhHHHHHhcCCHHHHHHhHcc--CCHHHHHHHHHHHHHHhhcCcchhhHHhhhch-HHHHHHHhcCCCCH
Q 000133 166 ALRNLSTSTEGFWAATVQAGGIDILVKLLTL--GQSSTQAHVCFLLACMMEEDVSVCSRVLAADA-TKQLLKLLGSGNEA 242 (2100)
Q Consensus 166 aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s--~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~-i~~Lv~lL~~~~~~ 242 (2100)
+|+.+|.+-+.....--...++..++.-++. ++..+|-.|..+|.+-......+...=.+.+. +...++. ..++|.
T Consensus 153 alGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEa-tq~~d~ 231 (859)
T KOG1241|consen 153 ALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEA-TQSPDE 231 (859)
T ss_pred HHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeec-ccCCcH
Confidence 9999997654331111233556666666554 56788999999986543221111111111111 2222332 344678
Q ss_pred HHHHHHHHHHHHhhcCChHh-HHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccc
Q 000133 243 SVRAEAAGALKSLSDHCKDA-RREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSL 321 (2100)
Q Consensus 243 ~v~~~Aa~aL~~Ls~~~~~~-~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~ 321 (2100)
+++..|..+|-.+.+-.-+. ...+.+ .-.+.-+..+.+.+ .++.-.+..-=.++|...-.+....++..
T Consensus 232 ~i~~aa~~ClvkIm~LyY~~m~~yM~~-alfaitl~amks~~---------deValQaiEFWsticeEEiD~~~e~~e~~ 301 (859)
T KOG1241|consen 232 EIQVAAFQCLVKIMSLYYEFMEPYMEQ-ALFAITLAAMKSDN---------DEVALQAIEFWSTICEEEIDLAIEYGEAV 301 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCc---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999998876521111 111111 11122233343332 33333333333344431100000001100
Q ss_pred cCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhcccc
Q 000133 322 ESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEA 401 (2100)
Q Consensus 322 ~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~ 401 (2100)
+.+.+ + .-...+-.++. +.
T Consensus 302 d~~~~---------------------------------------------p-~~~~fa~~a~~---------------~v 320 (859)
T KOG1241|consen 302 DQGLP---------------------------------------------P-SSKYFARQALQ---------------DV 320 (859)
T ss_pred hcCCC---------------------------------------------c-hhhHHHHHHHh---------------Hh
Confidence 10000 0 01122222222 44
Q ss_pred HHHHHHhhcC-------CCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCc
Q 000133 402 KRLLVGLITM-------ATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNEND 474 (2100)
Q Consensus 402 i~~Lv~lL~~-------~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~ 474 (2100)
+|.|+++|.. ++...-..|..||.-++....+ .|+. -.+|.+-.-+++++..-++.|+.+++.+-.+-+
T Consensus 321 ~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D---~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~ 396 (859)
T KOG1241|consen 321 VPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGD---DIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPE 396 (859)
T ss_pred hHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcc---cchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCc
Confidence 6667776643 2345667777777766654333 2222 345555556778999999999999999987666
Q ss_pred ccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHH-HhCCcHHHHHHHhhcCChhHHHHHHHHHHHH
Q 000133 475 DSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACV-ESADAVPALLWLLKNGSANGKEIAAKTLNHL 553 (2100)
Q Consensus 475 ~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i-~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L 553 (2100)
..+......+++|.++.++.+++..+++.++|.|+.++.+.++.+.-. ...+.++.|++.|.+ .|++-.++||++-+|
T Consensus 397 ~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~L 475 (859)
T KOG1241|consen 397 PDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISL 475 (859)
T ss_pred hhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHH
Confidence 777778888999999999999999999999999999998766443221 224455666666654 688999999999999
Q ss_pred hcCC----------CC------CcHHHHHHHhhc---CCcchHHHHHHHHHHHHhccCchh--HHHHhhhccchHHHHHH
Q 000133 554 IHKS----------DT------ATISQLTALLTS---DLPESKVYVLDALKSMLSVVSFSD--ILREGSAANDAVETMIK 612 (2100)
Q Consensus 554 ~~~~----------~~------~~i~~L~~lL~~---~~~~~~~~a~~aL~~l~~~~~~~~--~~~~~i~~~~~i~~Lv~ 612 (2100)
+.+. ++ ..+..|++.-.. .....|..+.+||+.+-...+..- .++... .-....|-+
T Consensus 476 aea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~--l~il~kl~q 553 (859)
T KOG1241|consen 476 AEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLT--LVILEKLDQ 553 (859)
T ss_pred HHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHH--HHHHHHHHH
Confidence 8421 01 122233333221 233578889999998876655321 111100 000111111
Q ss_pred Hhc-----CC----CHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCchhH
Q 000133 613 ILS-----ST----KEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDV-GSECILVEASRCLAAIFLSVRENR 682 (2100)
Q Consensus 613 lL~-----s~----~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~-~~~~v~~~aa~aL~~L~~~~~~~~ 682 (2100)
.+. .. -.++|-.-|.+|..+.+....-+... ...++..+++.+.+ ++..+...|..+++.++.+...
T Consensus 554 ~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~-~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~-- 630 (859)
T KOG1241|consen 554 TISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREV-SDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGK-- 630 (859)
T ss_pred HHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhH-HHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhH--
Confidence 222 11 13455556666666655433321111 22356667777766 5556788888999888765432
Q ss_pred HHHHHhCCChHHHHHHhCCC-CHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCChh--HHHHHHHHHHHHH
Q 000133 683 EVAAVARDALSPLVVLAGSP-VLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTIS--GKTLAAAAIARLL 759 (2100)
Q Consensus 683 ~~~~~~~~~l~~Lv~ll~~~-~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~--~~~~Aa~aL~~l~ 759 (2100)
+..-.-..+.|.|..-|+.. +-.|-..|....+.|+-.-+...-...++++..|+..|.++.-. ++-.-..+...+.
T Consensus 631 ~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIA 710 (859)
T KOG1241|consen 631 GFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIA 710 (859)
T ss_pred hHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHH
Confidence 11111134556666666432 22233444444444442222222334678888999999887643 3333333333332
Q ss_pred hcCccchhHhhhhhccCcHHHHHHhhhhcc------------cccchHhHHHHHHHH---HHcCCCCCCCCcccceeecc
Q 000133 760 HSRKIDYTITDCVNRAGTVLALVSFLESAS------------GSVATSEALDALAIL---SRSGGASGHVKPAWQVLAEF 824 (2100)
Q Consensus 760 ~~~~~~~~~~~~~~~~g~l~~li~~l~s~~------------~~v~~~~al~~L~~L---~~~~~~~~~~~~~~~~~~~~ 824 (2100)
-..+.+ +..| -+.+.++++...+.. ++.. +.++++.... ++++.... .++-.+
T Consensus 711 laIg~~--F~~Y---l~~vm~llq~as~~~~d~~~~~~~dYvd~LR-e~~leay~gi~qglk~~~~~~------~~~p~v 778 (859)
T KOG1241|consen 711 LAIGAD--FEPY---LEMVMPLLQQASSVQTDPADDSMVDYVDELR-EGILEAYTGIIQGLKTHADVM------LVQPYV 778 (859)
T ss_pred HHHHHh--HHHH---HHHHHHHHHHHHhccCCCCcccHHHHHHHHH-HHHHHHHHHHHHHhhcccchh------hhhcch
Confidence 211111 1111 112333333333211 1122 3344433322 22222211 222333
Q ss_pred CCCchhhhhhhccCC--hhHHHHHHHHHHHHhcCCcccchhcccccccchHHHHHHHhhcCCcceecchhhHHHHHhhh
Q 000133 825 PKSITPIVSSIADAT--PLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGAALLICAAKV 901 (2100)
Q Consensus 825 ~~~l~~L~~~l~~~~--~~~~~~a~~~L~~L~~~~~~~~g~~~~~~~~~~~~~~~~~l~s~~~~~r~~~~~~~~~~~~~ 901 (2100)
+.++.-+.+.=.++. ..+-..|..++.-|+..-+...++++... ..+..++.+...|+...+|-.|.|+.-.+-|.
T Consensus 779 ~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~~~~~~-~~i~~~L~~~~k~~~~~tK~~A~wa~e~ikr~ 856 (859)
T KOG1241|consen 779 PHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIKLFLDE-DWIKDFLNEGRKSSTQKTKDLARWATEEIKRQ 856 (859)
T ss_pred HHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhhhhcch-HHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 444443333333332 45566666677666554444444444432 34445666677899999999999997665544
No 33
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.22 E-value=5.1e-09 Score=139.74 Aligned_cols=400 Identities=17% Similarity=0.138 Sum_probs=273.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHH
Q 000133 402 KRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAIT 481 (2100)
Q Consensus 402 i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~ 481 (2100)
.+.+..++.++++.||+.|+.++..+....++. +... .++.+..++.++++.++..|+.++..+ ..+++... -.
T Consensus 116 ~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-~~ 189 (526)
T PF01602_consen 116 IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-SL 189 (526)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-TH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-hh
Confidence 455777888899999999999999998876663 2222 588899999999999999999999998 22222211 11
Q ss_pred hcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC--C
Q 000133 482 AAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD--T 559 (2100)
Q Consensus 482 ~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~--~ 559 (2100)
-...+..|.+++...++-.+..+...|..++...+..... ...++.+..++++.++.+.-.++.++.++..... .
T Consensus 190 ~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~ 266 (526)
T PF01602_consen 190 IPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPELLQ 266 (526)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHH
T ss_pred HHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchHHHH
Confidence 1113445555567789999999999999888754444311 3467888888888888899999999988765443 2
Q ss_pred CcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCChh
Q 000133 560 ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILS-STKEETQAKSASALAGIFETRKD 638 (2100)
Q Consensus 560 ~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~-s~~~~~~~~Aa~aL~~L~~~~~~ 638 (2100)
..+++|..++.+.++++|..+.++|..++... +. .+. .....+..+. +++..+|..+...|.+++.. .
T Consensus 267 ~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~----~v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~--~ 335 (526)
T PF01602_consen 267 KAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PP----AVF---NQSLILFFLLYDDDPSIRKKALDLLYKLANE--S 335 (526)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HH----HHG---THHHHHHHHHCSSSHHHHHHHHHHHHHH--H--H
T ss_pred hhHHHHHHHhhcccchhehhHHHHHHHhhccc--ch----hhh---hhhhhhheecCCCChhHHHHHHHHHhhcccc--c
Confidence 56888999999888889988888888776543 11 111 1233344555 88999999999999999953 4
Q ss_pred hHHHHHhcCchHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHH
Q 000133 639 LRESSIAVKTLWSVMKLL-DVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANL 717 (2100)
Q Consensus 639 ~~~~~~~~g~v~~Lv~lL-~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L 717 (2100)
+... +++.|...+ ...+++++..++..++.++...+... ...++.+++++....+.+...+...+.++
T Consensus 336 n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~------~~~v~~l~~ll~~~~~~~~~~~~~~i~~l 404 (526)
T PF01602_consen 336 NVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDA------EWYVDTLLKLLEISGDYVSNEIINVIRDL 404 (526)
T ss_dssp HHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSH------HHHHHHHHHHHHCTGGGCHCHHHHHHHHH
T ss_pred chhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchH------HHHHHHHHHhhhhccccccchHHHHHHHH
Confidence 4333 678888888 45578899999999999975432111 23678899999988888888889999998
Q ss_pred hcCcHHHHHHHHcCcHHHHHHHHccC-ChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcccccchHh
Q 000133 718 ILDSEVSEKAIAEEIILPATRVLCEG-TISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSE 796 (2100)
Q Consensus 718 ~~~~~~~~~~v~~~~v~~L~~ll~~~-~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~~~~ 796 (2100)
+.+.+... ..++..|.+.+.+- ++..+..++|.+++........... ...+..++......+..+. ..
T Consensus 405 l~~~~~~~----~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~------~~~~~~l~~~~~~~~~~vk-~~ 473 (526)
T PF01602_consen 405 LSNNPELR----EKILKKLIELLEDISSPEALAAAIWILGEYGELIENTESA------PDILRSLIENFIEESPEVK-LQ 473 (526)
T ss_dssp HHHSTTTH----HHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHH------HHHHHHHHHHHTTSHHHHH-HH
T ss_pred hhcChhhh----HHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccH------HHHHHHHHHhhccccHHHH-HH
Confidence 85433322 24588888888874 4458899999999987654431001 1122233444333334455 88
Q ss_pred HHHHHHHHHHcCCCCCCCCcccceeeccCCCchhhhhhhc--cCChhHHHHHHHHHHHH
Q 000133 797 ALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIA--DATPLLQDKAIEILSRL 853 (2100)
Q Consensus 797 al~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~--~~~~~~~~~a~~~L~~L 853 (2100)
.+.++..+....+.... -+..+..+.+... +.++.+|+.|.+.+.-|
T Consensus 474 ilt~~~Kl~~~~~~~~~----------~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 474 ILTALAKLFKRNPENEV----------QNEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HHHHHHHHHHHSCSTTH----------HHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCchhh----------HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 89999988765543110 0134555555666 56899999999988765
No 34
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=5.9e-09 Score=121.57 Aligned_cols=380 Identities=16% Similarity=0.103 Sum_probs=286.2
Q ss_pred HHHHHHHHHHhhcCCchhhHHHHhhhcchhHHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHhhcChHHHHHHHh
Q 000133 1289 QHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLV 1368 (2100)
Q Consensus 1289 ~~~A~~aL~~La~~~~~~~~~~~~v~~gal~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~~~~~~~i~~Lv~lL~ 1368 (2100)
.+.|...|.|++.+-...-.+ +..+++.-|++.|... +.++.......|..|+-..+.+..+...+.++.|+++..
T Consensus 280 Lrva~ylLlNlAed~~~ElKM---rrkniV~mLVKaLdr~-n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp 355 (791)
T KOG1222|consen 280 LRVAVYLLLNLAEDISVELKM---RRKNIVAMLVKALDRS-NSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFP 355 (791)
T ss_pred HHHHHHHHHHHhhhhhHHHHH---HHHhHHHHHHHHHccc-chHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcC
Confidence 345889999999766555444 4678999999999875 567888888999999988898999999999999999999
Q ss_pred cCCchHHHHHHHHHHHhcccHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCchhhHHHHhcCcHHHHHH
Q 000133 1369 TEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLD 1448 (2100)
Q Consensus 1369 ~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k~~i~~~~~i~~lv~ 1448 (2100)
..+++-+...+.-|.+++.+...|..+++.|.+|.|..++++... ..-|+..|..++-+ ++.|..+..+++|+.+.+
T Consensus 356 ~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~d-D~~K~MfayTdci~~lmk 432 (791)
T KOG1222|consen 356 IQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCD-DDAKAMFAYTDCIKLLMK 432 (791)
T ss_pred CCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccC-cHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987654 23578888888887 489999999999999988
Q ss_pred HhccCCh-hHHHHHHHHHHHHHhccCCcccccccCchHHHHHHhccCCCCchhHhHHHHHHHHhhcCCCcccccccccCC
Q 000133 1449 ILHEAPD-FLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQ 1527 (2100)
Q Consensus 1449 ~L~~~~~-~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~~~~~~~ 1527 (2100)
.+-...+ ++-.+...+|.+|+-+.++......|.++..|...--.+. +.. -.+.+.|++++....+.. .-.
T Consensus 433 ~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~---D~l--LmK~vRniSqHeg~tqn~---Fid 504 (791)
T KOG1222|consen 433 DVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSR---DLL--LMKVVRNISQHEGATQNM---FID 504 (791)
T ss_pred HHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhccc---chH--HHHHHHHhhhccchHHHH---HHH
Confidence 8755433 3444556688899988877765666777776665433222 111 256778887776544331 224
Q ss_pred ChHhhhhccC-CCCHHHHHHHHHHHHHhhc-cccccccccccCchHHHHHHhcc--CCHHHHHHHHHHHHHhhcCChhH-
Q 000133 1528 AIEPLIPLLD-SPAPAVQQLAAELLSHLLL-EEQLQKDPVTQQVIGPLIRVLGS--GIHILQQRAVKALVSIALTWPNE- 1602 (2100)
Q Consensus 1528 ~l~~Lv~~L~-~~~~~vq~~a~~aL~~l~~-~~~~~~~l~~~g~i~~Lv~lL~s--~~~~vr~~Al~AL~~Ls~~~~n~- 1602 (2100)
+++-|...++ +++++.-.++..+|+++.. +-++...+.+...+|.+-.-|.. ...++....+.+++..+.+...+
T Consensus 505 yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~ 584 (791)
T KOG1222|consen 505 YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCAR 584 (791)
T ss_pred HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHH
Confidence 5677777777 5567788899999999976 45566777777888888888843 44568888888899888877664
Q ss_pred -HHhccChHHHHHHhcc--cCCCchHHHHHHHHHHHHhhhc--ccchhhhc--ccHHHHHHHhhcCCHHHHHHHHHHHHH
Q 000133 1603 -IAKEGGVTELSKIILQ--ADPSLPHALWESAASVLSSILQ--FSSEFYLE--VPVAVLVRLLRSGSEGTVIGSLNALLV 1675 (2100)
Q Consensus 1603 -l~~~G~i~~Ll~lL~~--~~~~~~~~l~e~a~~~L~~i~~--~~~~~~~~--~~v~~Lv~ll~~~~~~~~~~a~~aL~~ 1675 (2100)
+..+|+|+.++++|.. +|+.... +...+.-.+.. .+..++.+ +.-..++.+.++.+.++|.-.-.+|-.
T Consensus 585 Lla~a~~i~tlieLL~a~QeDDEfV~----QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdI 660 (791)
T KOG1222|consen 585 LLAPAKLIDTLIELLQACQEDDEFVV----QIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDI 660 (791)
T ss_pred HhCccccHHHHHHHHHhhcccchHHH----HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHH
Confidence 7788999999999976 4543322 33444433332 23334433 456789999999999999999888887
Q ss_pred hccCChhhHHHH
Q 000133 1676 LESDDGTSAEAM 1687 (2100)
Q Consensus 1676 L~~~~~~~~~~i 1687 (2100)
++..+..=+..|
T Consensus 661 iae~d~EWAKrI 672 (791)
T KOG1222|consen 661 IAEHDKEWAKRI 672 (791)
T ss_pred HHHhhHHHHHHH
Confidence 777666544333
No 35
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=8e-08 Score=116.96 Aligned_cols=586 Identities=14% Similarity=0.088 Sum_probs=330.3
Q ss_pred CCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhh----hchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCh
Q 000133 185 GGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLA----ADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCK 260 (2100)
Q Consensus 185 g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~----~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~ 260 (2100)
.++|.|.++|.+++...++.|.++|..++.+.......-+. .-.+|.+++..++++ +.+|..|..++-.+--..+
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~s-pkiRs~A~~cvNq~i~~~~ 206 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPS-PKIRSHAVGCVNQFIIIQT 206 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCC-hhHHHHHHhhhhheeecCc
Confidence 45899999999999999999999999998655432211000 135889999999876 5899999999877654222
Q ss_pred HhHHHHHhC-CChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCC-CcchhhhccccccCCCChhhhhhhhhhhH
Q 000133 261 DARREIAGS-NGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGG-LSNVISSLGQSLESCSSPAQVADTLGALA 338 (2100)
Q Consensus 261 ~~~~~i~~~-g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~-~~~~i~~l~~~~~~~~~~~~~~~~~gal~ 338 (2100)
+.....- .-++.+..+-.. .++.++.+.+.+|..+..- .+.++.. ..+.++
T Consensus 207 --qal~~~iD~Fle~lFalanD---------~~~eVRk~vC~alv~Llevr~dkl~ph----------------l~~Ive 259 (885)
T KOG2023|consen 207 --QALYVHIDKFLEILFALAND---------EDPEVRKNVCRALVFLLEVRPDKLVPH----------------LDNIVE 259 (885)
T ss_pred --HHHHHHHHHHHHHHHHHccC---------CCHHHHHHHHHHHHHHHHhcHHhcccc----------------hHHHHH
Confidence 1111111 123333333322 2478999999998876541 1111111 134455
Q ss_pred HHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhc--cccHHHHHHhhcCC----
Q 000133 339 SALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLEN--SEAKRLLVGLITMA---- 412 (2100)
Q Consensus 339 ~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~--~g~i~~Lv~lL~~~---- 412 (2100)
|+++..+. .++.|.-.|++-...++.+|..+..+.. ...+|.|+.-+...
T Consensus 260 yML~~tqd------------------------~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~ 315 (885)
T KOG2023|consen 260 YMLQRTQD------------------------VDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDI 315 (885)
T ss_pred HHHHHccC------------------------cchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccH
Confidence 55554441 1223455555555555555533222221 11233333222100
Q ss_pred ----------------------------------------------------CHHHHHHHHHHHHHhhccCccchHHHHh
Q 000133 413 ----------------------------------------------------TNEVQEELVRALLKLCNNEGSLWRALQG 440 (2100)
Q Consensus 413 ----------------------------------------------------~~~v~~~A~~aL~~L~~~~~~~~~~i~~ 440 (2100)
+...|+..+.+|-.|+.-- ++.+..
T Consensus 316 ~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf---~~elL~ 392 (885)
T KOG2023|consen 316 ILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVF---GDELLP 392 (885)
T ss_pred HHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhh---HHHHHH
Confidence 0234544444444444321 112211
Q ss_pred CCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCC--hhh
Q 000133 441 REGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHS--EDI 518 (2100)
Q Consensus 441 ~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~--~~~ 518 (2100)
-.+|.|-+.|.++...+++.++.+|+.++.+.-+. ..-.--..||.|+++|.+..+-+|.-+||+|...+..- +..
T Consensus 393 -~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g-~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~ 470 (885)
T KOG2023|consen 393 -ILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQG-FVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSR 470 (885)
T ss_pred -HHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhh-cccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCCh
Confidence 23566666777889999999999999998542211 00011125788999999999999999999999887531 111
Q ss_pred HHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhc-------CCcchHHHHHHHHHHHHhcc
Q 000133 519 RACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTS-------DLPESKVYVLDALKSMLSVV 591 (2100)
Q Consensus 519 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~-------~~~~~~~~a~~aL~~l~~~~ 591 (2100)
...+. .++..|+..+-+++.++++.||.+..-+-....++-+|-|-.+|.. .......-...|+|.++...
T Consensus 471 ~~~f~--pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsv 548 (885)
T KOG2023|consen 471 DEYFK--PVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSV 548 (885)
T ss_pred HhhhH--HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHH
Confidence 12221 2444555555568899999999999999777666666655444432 22222223456677666533
Q ss_pred ----CchhHHHHhhhccchHHHHHH---HhcCCC-------------------------HHHHHHHHHHHHH----HhcC
Q 000133 592 ----SFSDILREGSAANDAVETMIK---ILSSTK-------------------------EETQAKSASALAG----IFET 635 (2100)
Q Consensus 592 ----~~~~~~~~~i~~~~~i~~Lv~---lL~s~~-------------------------~~~~~~Aa~aL~~----L~~~ 635 (2100)
+.+.-++-. +|+|++ ++++++ +++-..+...+.+ ++..
T Consensus 549 g~~Ln~~~YiqiL------mPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~ 622 (885)
T KOG2023|consen 549 GHALNKPAYIQIL------MPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKV 622 (885)
T ss_pred HHhcCcHHHHHHh------ccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhc
Confidence 222212211 344443 222222 3344444444442 2221
Q ss_pred Ch----------------------------hhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHH
Q 000133 636 RK----------------------------DLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAV 687 (2100)
Q Consensus 636 ~~----------------------------~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~ 687 (2100)
.. +....+...+....+..-+.+..++++..+-.-|+-++....+ ++...
T Consensus 623 ~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~--~v~p~ 700 (885)
T KOG2023|consen 623 QQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFE--HVIPN 700 (885)
T ss_pred cCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH--hccch
Confidence 11 0111134445555556666788888888888888888665422 22111
Q ss_pred hCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCChh--HHHHHHHHHHHHHhcCccc
Q 000133 688 ARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTIS--GKTLAAAAIARLLHSRKID 765 (2100)
Q Consensus 688 ~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~--~~~~Aa~aL~~l~~~~~~~ 765 (2100)
-.++++.|-.-+......+--+|+||++.|+..-....+..-..++..|...++..... +-++.|-.+.++....+..
T Consensus 701 ~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~ 780 (885)
T KOG2023|consen 701 LADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEE 780 (885)
T ss_pred HHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHh
Confidence 12344444433444555677999999999984422222233456777787777766554 6888898999988766542
Q ss_pred hhHhhhhhccCcHHHHHHhhhhcccccchHhHHHHHHHHHHcCCCCCCCCcccceeeccCCCchhhhhhhcc---CChhH
Q 000133 766 YTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIAD---ATPLL 842 (2100)
Q Consensus 766 ~~~~~~~~~~g~l~~li~~l~s~~~~v~~~~al~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~---~~~~~ 842 (2100)
. .. .-+..+.+-+..++..++..-++.|+..+-++.+..+. .+-.++.-++.++++ ....+
T Consensus 781 v--Ap--~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~------------~vv~~~~f~c~aiAsw~np~~~l 844 (885)
T KOG2023|consen 781 V--AP--HLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPS------------GVVSSFIFICDAIASWSNPEDDL 844 (885)
T ss_pred c--ch--hHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCch------------hhhhhhHHHHHHHhcccChHHHH
Confidence 1 11 12446677777777776444447777777776544432 111222223333333 33678
Q ss_pred HHHHHHHHHHH
Q 000133 843 QDKAIEILSRL 853 (2100)
Q Consensus 843 ~~~a~~~L~~L 853 (2100)
|+...++|..+
T Consensus 845 ~~~f~kiL~g~ 855 (885)
T KOG2023|consen 845 RDEFYKILQGF 855 (885)
T ss_pred HHHHHHHHHHH
Confidence 88888888877
No 36
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.17 E-value=8.9e-10 Score=127.71 Aligned_cols=227 Identities=19% Similarity=0.202 Sum_probs=175.2
Q ss_pred HHhCCcHHHHHHhhCC-CCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCCh
Q 000133 438 LQGREGIQLLISLLGL-SSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSE 516 (2100)
Q Consensus 438 i~~~g~i~~Lv~lL~s-~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~ 516 (2100)
+.+.+.++.|+.+|+. .++.+++.+..+++|.+ .++.++..+.+.||++.+..++.++++.+|+.|.++|.|++. +.
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~a-af~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~-~~ 85 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSA-AFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSV-ND 85 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhc-cChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCC-Ch
Confidence 3566788999999995 68999999999999998 489999999999999999999999999999999999999997 46
Q ss_pred hhHHHHHhCCcHHHHHHHhhcC--ChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCch
Q 000133 517 DIRACVESADAVPALLWLLKNG--SANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFS 594 (2100)
Q Consensus 517 ~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~ 594 (2100)
+++..+.. .++.+++...+. +..++..+.++|.||+...+.
T Consensus 86 en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~----------------------------------- 128 (254)
T PF04826_consen 86 ENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY----------------------------------- 128 (254)
T ss_pred hhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch-----------------------------------
Confidence 77777654 467777665553 446777777777777543221
Q ss_pred hHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCC-CHHHHHHHHHHHHH
Q 000133 595 DILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVG-SECILVEASRCLAA 673 (2100)
Q Consensus 595 ~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~-~~~v~~~aa~aL~~ 673 (2100)
+..+. +.++.++.+|.+++..+|..+..+|.||+.+ +.+...+..++++..++.++..+ +.++...+...+.|
T Consensus 129 ---~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n-p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~n 202 (254)
T PF04826_consen 129 ---HHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN-PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFEN 202 (254)
T ss_pred ---hhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhccC-HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHH
Confidence 11221 2489999999999999999999999999997 77778888889999999999664 67889999999999
Q ss_pred HhcCCchhHH-------------HHHHhCC-ChHHHHHHhCCCCHHHHHH
Q 000133 674 IFLSVRENRE-------------VAAVARD-ALSPLVVLAGSPVLEVAEQ 709 (2100)
Q Consensus 674 L~~~~~~~~~-------------~~~~~~~-~l~~Lv~ll~~~~~evr~~ 709 (2100)
+..+...... ..+.+.+ ..+.|..+..++++|||++
T Consensus 203 i~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~ 252 (254)
T PF04826_consen 203 INENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQ 252 (254)
T ss_pred HHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhh
Confidence 9654432211 1122222 4455566666777777764
No 37
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.13 E-value=8.3e-11 Score=123.01 Aligned_cols=113 Identities=20% Similarity=0.389 Sum_probs=97.1
Q ss_pred CCceeeeeccchhhhhh--------CCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCC
Q 000133 1979 GTLVVIIKRGNNMKQSV--------GNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKS 2050 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2050 (2100)
|+|.|+|++..++...- |.+.-|+.+.+|+ ...+|++++++.+|+|+|.|.|.+. ++.++.+.|+|++++
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~-~~~kT~~~~~t~~P~W~e~f~~~v~-~~~~~~l~i~v~d~~ 78 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA-QTFKSKVIKENLNPKWNEVYEAVVD-EVPGQELEIELFDED 78 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECC-EeEEccccCCCCCCcccceEEEEeC-CCCCCEEEEEEEecC
Confidence 88999999999997642 4567899999976 7889999999999999999999886 457899999999999
Q ss_pred ccCCcccceEEEEEeeEEeecccccceeecCCCCCCCCcceEEEEEe
Q 000133 2051 KMGKSSFGKVTIQIDRVVMLGAVAGEYTLLPESKSGPSRNLEIEFLW 2097 (2100)
Q Consensus 2051 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2097 (2100)
.++.+.+|+++|+++++...|....-|.|.+. ++|+. .++++|
T Consensus 79 ~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~-~~G~~---~~~~~~ 121 (121)
T cd08391 79 PDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDV-KSGRL---HLKLEW 121 (121)
T ss_pred CCCCCcEEEEEEEHHHhcccCccceEEECcCC-CCceE---EEEEeC
Confidence 99666789999999999999999999999543 56764 588988
No 38
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=2.6e-06 Score=106.25 Aligned_cols=479 Identities=15% Similarity=0.138 Sum_probs=285.2
Q ss_pred HHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCC-HHHHHHHHHHHHH-hhcCChHhHH
Q 000133 187 IDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNE-ASVRAEAAGALKS-LSDHCKDARR 264 (2100)
Q Consensus 187 v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~v~~~Aa~aL~~-Ls~~~~~~~~ 264 (2100)
++.|.. --++|+.++.+|-.-|.++...+ ...| +..|.+.|.+.+. ...|..|--.|.| |..++++.++
T Consensus 4 ~~~le~-tlSpD~n~~~~Ae~~l~~~~~~n---f~~F-----~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~ 74 (859)
T KOG1241|consen 4 LELLEK-TLSPDQNVRKRAEKQLEQAQSQN---FPQF-----LVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQ 74 (859)
T ss_pred HHHHHH-HcCCCcchHHHHHHHHHHHHhcc---HHHH-----HHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHH
Confidence 344444 45678888888888887666442 2333 5566666665443 5677777777877 4444555444
Q ss_pred HHHhC-CChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHH
Q 000133 265 EIAGS-NGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMI 343 (2100)
Q Consensus 265 ~i~~~-g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~ 343 (2100)
...+. =+++. +..+.+..++.++|. .. -|+.+...+...++++.+
T Consensus 75 ~~~qRWl~l~~---------------e~reqVK~~il~tL~---~~-------------ep~~~s~Aaq~va~IA~~--- 120 (859)
T KOG1241|consen 75 QYQQRWLQLPA---------------EIREQVKNNILRTLG---SP-------------EPRRPSSAAQCVAAIACI--- 120 (859)
T ss_pred HHHHHHHcCCH---------------HHHHHHHHHHHHHcC---CC-------------CCCccchHHHHHHHHHHh---
Confidence 43321 12221 112334444444443 10 122222222233333221
Q ss_pred hccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhc-cccHHHHHHhhc--CCCHHHHHHH
Q 000133 344 YDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLEN-SEAKRLLVGLIT--MATNEVQEEL 420 (2100)
Q Consensus 344 l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~-~g~i~~Lv~lL~--~~~~~v~~~A 420 (2100)
+ -....-| +++..|+.-.....+..+|+...++++.+...-+-...... ...+..++.-++ .++..+|..|
T Consensus 121 -E----lP~n~wp-~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa 194 (859)
T KOG1241|consen 121 -E----LPQNQWP-ELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAA 194 (859)
T ss_pred -h----CchhhCH-HHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHH
Confidence 1 0000011 34445555555555557899999999988654222221111 223444555554 3577899999
Q ss_pred HHHHHHhh-ccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHH
Q 000133 421 VRALLKLC-NNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAK 499 (2100)
Q Consensus 421 ~~aL~~L~-~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 499 (2100)
..+|.|-- ..+.++....-..-.++...+.-.+++.+++..|..+|..+..-.-+.-..-......+.-+..+.+.+++
T Consensus 195 ~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~de 274 (859)
T KOG1241|consen 195 LNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDE 274 (859)
T ss_pred HHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH
Confidence 99998732 21112211211112356777778889999999999999988753333222222333444455667788999
Q ss_pred HHHHHHHHHHHHhcCChhhH------HH-----------HHh---CCcHHHHHHHhhc-------CChhHHHHHHHHHHH
Q 000133 500 AKEDSASILRNLCNHSEDIR------AC-----------VES---ADAVPALLWLLKN-------GSANGKEIAAKTLNH 552 (2100)
Q Consensus 500 vre~A~~aL~~L~~~~~~~~------~~-----------i~~---~g~i~~Lv~lL~~-------~~~~~~~~Aa~aL~~ 552 (2100)
+.-++..--.++|.. ++- .. +.+ .+++|.|+++|.. .+|..-+.|..+|.-
T Consensus 275 ValQaiEFWsticeE--EiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l 352 (859)
T KOG1241|consen 275 VALQAIEFWSTICEE--EIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLML 352 (859)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHH
Confidence 998888887778753 211 11 111 3677899999865 245677778788877
Q ss_pred HhcCCCCCcHHHHHHH----hhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHH
Q 000133 553 LIHKSDTATISQLTAL----LTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASA 628 (2100)
Q Consensus 553 L~~~~~~~~i~~L~~l----L~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~a 628 (2100)
++..-.+..+|+.+.. ++++++..|+.+..++|++..-. .++..... -.+++|.++.++.+++-.++..++|+
T Consensus 353 ~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp-~~~~Lt~i--V~qalp~ii~lm~D~sl~VkdTaAwt 429 (859)
T KOG1241|consen 353 FAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGP-EPDKLTPI--VIQALPSIINLMSDPSLWVKDTAAWT 429 (859)
T ss_pred HHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCC-chhhhhHH--HhhhhHHHHHHhcCchhhhcchHHHH
Confidence 7765566677776665 55788889999999988765432 22222222 35679999999999999999999999
Q ss_pred HHHHhcCChhhH-HHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHH----HHhCCChHHHH-HHhCC-
Q 000133 629 LAGIFETRKDLR-ESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVA----AVARDALSPLV-VLAGS- 701 (2100)
Q Consensus 629 L~~L~~~~~~~~-~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~----~~~~~~l~~Lv-~ll~~- 701 (2100)
|+.++...++.+ ........++.|+..|.+. +++...+|+++.+|+.+..+..... +.+ ...+.++ .|++.
T Consensus 430 lgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De-Prva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~t 507 (859)
T KOG1241|consen 430 LGRIADFLPEAIINQELLQSKLSALLEGLNDE-PRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVT 507 (859)
T ss_pred HHHHHhhchhhcccHhhhhHHHHHHHHHhhhC-chHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhc
Confidence 999998766432 2233445777888888765 5799999999999974332211110 111 2333444 34432
Q ss_pred -----CCHHHHHHHHHHHHHHhcCc
Q 000133 702 -----PVLEVAEQATCALANLILDS 721 (2100)
Q Consensus 702 -----~~~evr~~aa~aL~~L~~~~ 721 (2100)
.....|..|-.||..|+...
T Consensus 508 dr~dgnqsNLR~AAYeALmElIk~s 532 (859)
T KOG1241|consen 508 DRADGNQSNLRSAAYEALMELIKNS 532 (859)
T ss_pred cccccchhhHHHHHHHHHHHHHHcC
Confidence 34458899999999998553
No 39
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.12 E-value=3.3e-08 Score=121.54 Aligned_cols=497 Identities=14% Similarity=0.080 Sum_probs=291.6
Q ss_pred hcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHh
Q 000133 104 LKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQ 183 (2100)
Q Consensus 104 L~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~ 183 (2100)
+-+.+++....|..-..|...+. ...+..+++.|++|.|..+++..+.... .+......+..+..........+.+
T Consensus 18 L~~~dpe~lvrai~~~kN~vig~---~~~K~~~ik~GAv~~Ll~L~s~e~~s~~-~k~~~~~llns~f~~eqd~v~svL~ 93 (678)
T KOG1293|consen 18 LLHLDPEQLVRAIYMSKNLVIGF---TDNKETNIKLGAVELLLALLSLEDGSTE-LKNGFAVLLNSLFLGEQDKVDSVLR 93 (678)
T ss_pred hhcCCHHHHHHHHHHhcchhhcC---CCccchhhhhcchHHHHhhccccCCchh-hhhhHHHHHHhHHhhccchHHHHHH
Confidence 34556666555666666766642 2224458899999999999987654433 3333445566666666677778999
Q ss_pred cCCHHHHHHhHccCC-HHHHHHHHHHHHHHhhcCcc--hhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCh
Q 000133 184 AGGIDILVKLLTLGQ-SSTQAHVCFLLACMMEEDVS--VCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCK 260 (2100)
Q Consensus 184 ~g~v~~Lv~lL~s~~-~~v~~~a~~~L~~L~~~~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~ 260 (2100)
++-++.|.+++.++| ..++....+++..+-..++. ..........++.+.-++....+ .....-+....+++. .+
T Consensus 94 ~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk-~~~~l~~~~~a~~s~-~~ 171 (678)
T KOG1293|consen 94 IIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELK-YISRLDVSRAAHLSS-TK 171 (678)
T ss_pred HhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhh-hhhhhhhhhhccccc-cc
Confidence 999999999999999 77899999999887755431 22222334455555555552332 344444455555655 45
Q ss_pred HhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHH---HhhCCCcchhhhccccccCCCChhhhhhhhhhh
Q 000133 261 DARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALA---NISGGLSNVISSLGQSLESCSSPAQVADTLGAL 337 (2100)
Q Consensus 261 ~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~---nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal 337 (2100)
+.+.....+|..+.+.-++...+ ..++..+..+++ ++... .|
T Consensus 172 ~hq~Il~Na~i~ekI~~l~~~~s---------~~~RlaaL~~~sr~~~iL~N-------------n~------------- 216 (678)
T KOG1293|consen 172 DHQLILCNAGILEKINILLMYLS---------SKLRLAALLCLSRGDRILRN-------------NP------------- 216 (678)
T ss_pred hhhheeccccchhhHHHHHHhhh---------HHHHHHHHHHhhccceeeec-------------Cc-------------
Confidence 77777778888777666554322 345555555444 11110 00
Q ss_pred HHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHH--HHHHhhcCCCHH
Q 000133 338 ASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKR--LLVGLITMATNE 415 (2100)
Q Consensus 338 ~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~--~Lv~lL~~~~~~ 415 (2100)
.....++. .+...|..+ .+-+++++++..
T Consensus 217 --------------------~~sm~~l~-----------------------------~L~d~~v~~r~~v~rL~k~~~~s 247 (678)
T KOG1293|consen 217 --------------------LGSMFLLG-----------------------------LLKDKGVNIRCVVTRLLKDPDFS 247 (678)
T ss_pred --------------------hhHHHHHH-----------------------------HHhccccchhhhhhhhhhCCCcc
Confidence 00000111 111222222 234456677777
Q ss_pred HHHHHHHHHHHhhccCccc-----hHHHHhCCc--HH--HHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCCh
Q 000133 416 VQEELVRALLKLCNNEGSL-----WRALQGREG--IQ--LLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGI 486 (2100)
Q Consensus 416 v~~~A~~aL~~L~~~~~~~-----~~~i~~~g~--i~--~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i 486 (2100)
.+..++.++.+++..+-++ +..+.+.|- +- ..+.+...+-......++...|-++..-...+...++...+
T Consensus 248 ~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~ 327 (678)
T KOG1293|consen 248 ERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATL 327 (678)
T ss_pred HHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhh
Confidence 8888888988888765221 122233331 11 11112222221222233334444443233444555556666
Q ss_pred HHHHHhccCC------CHHHHHHHHHH---HHHHhcCC-hhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcC
Q 000133 487 PPLVQILESG------SAKAKEDSASI---LRNLCNHS-EDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHK 556 (2100)
Q Consensus 487 ~~Lv~lL~~~------~~~vre~A~~a---L~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~ 556 (2100)
+.+++++... .++.|.-++.- +..++... -..++.+.+......+..+...
T Consensus 328 ~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~------------------- 388 (678)
T KOG1293|consen 328 KTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPI------------------- 388 (678)
T ss_pred hhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHcccccc-------------------
Confidence 6666666432 22222111110 00011000 0112222221111111111111
Q ss_pred CCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Q 000133 557 SDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETR 636 (2100)
Q Consensus 557 ~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~ 636 (2100)
.+...+..+..++.++.... ...+.+..+.++...|++++..++-.++..+..+|+|+.-..
T Consensus 389 ---------------kd~~~~aaa~l~~~s~srsV---~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmef 450 (678)
T KOG1293|consen 389 ---------------KDHDFVAAALLCLKSFSRSV---SALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEF 450 (678)
T ss_pred ---------------ccHHHHHHHHHHHHHHHHHH---HHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhc
Confidence 22233333444444333211 113445667788999999999999999999999999999888
Q ss_pred hhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHH
Q 000133 637 KDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALAN 716 (2100)
Q Consensus 637 ~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~ 716 (2100)
.+.+..+...|+|..+...+.+.++.++..+.++|+++.-...+..+......=.-..+..+..+++++|++++...|.|
T Consensus 451 s~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRN 530 (678)
T KOG1293|consen 451 SNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRN 530 (678)
T ss_pred ccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999776655444444444456677789999999999999999999
Q ss_pred HhcCcHHHHHH
Q 000133 717 LILDSEVSEKA 727 (2100)
Q Consensus 717 L~~~~~~~~~~ 727 (2100)
+.+++.....+
T Consensus 531 l~c~~~~svdf 541 (678)
T KOG1293|consen 531 LTCNSRKSVDF 541 (678)
T ss_pred hhcCcHHHHHH
Confidence 99886544333
No 40
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.07 E-value=2.4e-10 Score=118.76 Aligned_cols=111 Identities=23% Similarity=0.453 Sum_probs=92.1
Q ss_pred Cceeeeeccchhhhh--hCCCcceEEEecCC--CCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCc
Q 000133 1980 TLVVIIKRGNNMKQS--VGNPSVYCKLTLGN--TPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKS 2055 (2100)
Q Consensus 1980 ~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2055 (2100)
.|+|+|.+..+++.. +|.+.-++.+.+++ +..++|||++++.||+|||.|.|.+. ++..++|.|+|+++++|+.+
T Consensus 1 ~L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~-~~~~~~l~v~v~d~d~~~~~ 79 (119)
T cd04036 1 LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQ-SQVKNVLELTVMDEDYVMDD 79 (119)
T ss_pred CeEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeC-cccCCEEEEEEEECCCCCCc
Confidence 489999999999765 45566788888874 46689999999999999999999887 45678999999999999888
Q ss_pred ccceEEEEEeeEEeecccccceeecCCCCCCCCcceEEEE
Q 000133 2056 SFGKVTIQIDRVVMLGAVAGEYTLLPESKSGPSRNLEIEF 2095 (2100)
Q Consensus 2056 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2095 (2100)
.+|++.|+++++.....+...|.|.+. +.|. |.|||
T Consensus 80 ~iG~~~~~l~~l~~g~~~~~~~~L~~~-~~g~---l~~~~ 115 (119)
T cd04036 80 HLGTVLFDVSKLKLGEKVRVTFSLNPQ-GKEE---LEVEF 115 (119)
T ss_pred ccEEEEEEHHHCCCCCcEEEEEECCCC-CCce---EEEEE
Confidence 889999999999888888999999553 3555 44555
No 41
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=1.1e-07 Score=111.16 Aligned_cols=406 Identities=14% Similarity=0.130 Sum_probs=264.1
Q ss_pred HHHHHHHHHHHccCCCh-hHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhcCCHHHHHHHHHHHHhhhccchh
Q 000133 9 ASVAQCIEQLRQSSSSV-QEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENEL 87 (2100)
Q Consensus 9 ~~v~~~~~~l~~~~~~~-~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~ 87 (2100)
.++.++.++++...... +--+.|+..|..+++.-..--++.. ...|..|++.|.-.+.+.-.-+...|..|+--.++
T Consensus 260 ~e~dr~~kklk~~~~KQeqLLrva~ylLlNlAed~~~ElKMrr--kniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eN 337 (791)
T KOG1222|consen 260 EEIDRLNKKLKTAIRKQEQLLRVAVYLLLNLAEDISVELKMRR--KNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDEN 337 (791)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH--HhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccc
Confidence 44556666655432111 1124567778888887652222111 25789999999999898888999999999977888
Q ss_pred hHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHHHHHHHHH
Q 000133 88 RVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGAL 167 (2100)
Q Consensus 88 ~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL 167 (2100)
+..+.+.|.+..|+++....+++.+.+....|+|+|. +...+..|+..|.+|.|..+|.+.+.. +.|...|
T Consensus 338 K~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSF----D~glr~KMv~~GllP~l~~ll~~d~~~-----~iA~~~l 408 (791)
T KOG1222|consen 338 KIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSF----DSGLRPKMVNGGLLPHLASLLDSDTKH-----GIALNML 408 (791)
T ss_pred hHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccc----cccccHHHhhccchHHHHHHhCCcccc-----hhhhhhh
Confidence 9999999999999999999999999999999999999 566688899999999999999875433 2456678
Q ss_pred HHhccCChhhHHHHHhcCCHHHHHHhHccC-CHHHHHH-HHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHH
Q 000133 168 RNLSTSTEGFWAATVQAGGIDILVKLLTLG-QSSTQAH-VCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVR 245 (2100)
Q Consensus 168 ~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~-~~~v~~~-a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~ 245 (2100)
+.++.++ ..+.-+.-..+|+.+.+.+-++ +.++-.. .+.++ +++.... +...+.+..++..|++.--.+.|.
T Consensus 409 Yh~S~dD-~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ci-Nl~lnkR-NaQlvceGqgL~~LM~ra~k~~D~--- 482 (791)
T KOG1222|consen 409 YHLSCDD-DAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCI-NLCLNKR-NAQLVCEGQGLDLLMERAIKSRDL--- 482 (791)
T ss_pred hhhccCc-HHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHH-HHHhccc-cceEEecCcchHHHHHHHhcccch---
Confidence 8887665 3444355668899888866553 3344322 22333 6665433 556667778888888876555552
Q ss_pred HHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCC-cchhhhccccccCC
Q 000133 246 AEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGL-SNVISSLGQSLESC 324 (2100)
Q Consensus 246 ~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~-~~~i~~l~~~~~~~ 324 (2100)
.-..+++|++.+....+..+.+. +..|...+...+ .+.+.-.+.++|+|+...+ ++
T Consensus 483 -lLmK~vRniSqHeg~tqn~Fidy--vgdLa~i~~nd~--------~E~F~~EClGtlanL~v~dldw------------ 539 (791)
T KOG1222|consen 483 -LLMKVVRNISQHEGATQNMFIDY--VGDLAGIAKNDN--------SESFGLECLGTLANLKVTDLDW------------ 539 (791)
T ss_pred -HHHHHHHHhhhccchHHHHHHHH--HHHHHHHhhcCc--------hHHHHHHHHHHHhhcccCCCCH------------
Confidence 23457889998655455555554 333444343322 2345556666777665421 00
Q ss_pred CChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHH
Q 000133 325 SSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRL 404 (2100)
Q Consensus 325 ~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~ 404 (2100)
+. +++ ....+|.+...|.++..+
T Consensus 540 -------------~~---ilq----------~~~LvPw~k~~L~pga~e------------------------------- 562 (791)
T KOG1222|consen 540 -------------AK---ILQ----------SENLVPWMKTQLQPGADE------------------------------- 562 (791)
T ss_pred -------------HH---HHh----------hccccHHHHHhhcCCccc-------------------------------
Confidence 00 000 012333333333333221
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCC--CCHHHHHHHHHHHHHhccCCcccHHH-HH
Q 000133 405 LVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGL--SSEQQQECSVALLCLLSNENDDSKWA-IT 481 (2100)
Q Consensus 405 Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s--~~~~v~~~A~~aL~nLs~~~~~~~~~-i~ 481 (2100)
.+.+...+-+++.++.+ ......+..++.|+.|+++|+. .+++...+...++..+..+ ...+.. +.
T Consensus 563 ---------ddLvL~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~H-e~tr~~mik 631 (791)
T KOG1222|consen 563 ---------DDLVLQIVIACGTMARD-LDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKH-ELTRRLMIK 631 (791)
T ss_pred ---------hhhhhHHHHHhhhhhhh-hHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 12333333344444443 2333455567899999999985 3667777777777777764 444444 44
Q ss_pred hcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 000133 482 AAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACV 522 (2100)
Q Consensus 482 ~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i 522 (2100)
+...-..|+.++.+.+.++|+-|-.+|--++.++.+-...|
T Consensus 632 et~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWAKrI 672 (791)
T KOG1222|consen 632 ETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWAKRI 672 (791)
T ss_pred hccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 55555679999999999999999999999998766654444
No 42
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.06 E-value=5.5e-09 Score=121.17 Aligned_cols=192 Identities=21% Similarity=0.212 Sum_probs=160.6
Q ss_pred hhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHH
Q 000133 358 IVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRA 437 (2100)
Q Consensus 358 ~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~ 437 (2100)
+-.+-|+.+|+...+..+|+.+..++++.+..|.++..+.+.|+++.+..++.++++.++..|+.+|.|++.+. +++..
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~-en~~~ 90 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVND-ENQEQ 90 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCCh-hhHHH
Confidence 33466777888777777899999999999999999999999999999999999999999999999999999884 44555
Q ss_pred HHhCCcHHHHHHhhCCC--CHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCC
Q 000133 438 LQGREGIQLLISLLGLS--SEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHS 515 (2100)
Q Consensus 438 i~~~g~i~~Lv~lL~s~--~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~ 515 (2100)
+. ..++.+.+.+.+. +..+|..+..+|.||+. .++.+..+. +.++.++.+|..++..+|.++.++|.||+. +
T Consensus 91 Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv-~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~-n 164 (254)
T PF04826_consen 91 IK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTV-TNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSE-N 164 (254)
T ss_pred HH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCC-CcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhcc-C
Confidence 53 3566666654443 78999999999999985 555556654 479999999999999999999999999998 4
Q ss_pred hhhHHHHHhCCcHHHHHHHhhcC-ChhHHHHHHHHHHHHhcC
Q 000133 516 EDIRACVESADAVPALLWLLKNG-SANGKEIAAKTLNHLIHK 556 (2100)
Q Consensus 516 ~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~Aa~aL~~L~~~ 556 (2100)
+.....+...+++..++.+++.. +.+....+.....|+..+
T Consensus 165 p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 165 PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 77777777888999999999986 566788888888888653
No 43
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=2.1e-07 Score=113.53 Aligned_cols=627 Identities=13% Similarity=0.084 Sum_probs=338.8
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhc---cCChHHHHHHhhccCCCcchHHHHHHHHHHHhc
Q 000133 95 GCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFST---EGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLS 171 (2100)
Q Consensus 95 g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~---~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~ 171 (2100)
..+|.|..+|.+++...++-|..||..++.+.. +...+. +.+ +-.+|.+++..+.. .+.++..+..|+-.+.
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa-~~lds~-~~~rpl~~mipkfl~f~~h~---spkiRs~A~~cvNq~i 202 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSA-QFLDSD-VLTRPLNIMIPKFLQFFKHP---SPKIRSHAVGCVNQFI 202 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhH-HHHhhh-cccCchHHhHHHHHHHHhCC---ChhHHHHHHhhhhhee
Confidence 357889999999998999999999999998422 110010 001 12377788777664 4558888887776654
Q ss_pred cCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHH
Q 000133 172 TSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGA 251 (2100)
Q Consensus 172 ~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~a 251 (2100)
-.....-. ..=...++.+..+-...+++||.+.|..|..|..-.++..... -.+.+...++.-+. .|.++-.+|+.-
T Consensus 203 ~~~~qal~-~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~ph-l~~IveyML~~tqd-~dE~VALEACEF 279 (885)
T KOG2023|consen 203 IIQTQALY-VHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPH-LDNIVEYMLQRTQD-VDENVALEACEF 279 (885)
T ss_pred ecCcHHHH-HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccc-hHHHHHHHHHHccC-cchhHHHHHHHH
Confidence 33221111 1112346677777788999999999999987775444221111 13456666665555 456899999999
Q ss_pred HHHhhcCChHhHHHHHhC--CChHHHHHhhcCCCcchh-hh---------hhhHHHH--HHHHHHHHHhhCCCcchhhhc
Q 000133 252 LKSLSDHCKDARREIAGS--NGIPAMINATIAPSKEFM-QG---------EYAQALQ--ENAMCALANISGGLSNVISSL 317 (2100)
Q Consensus 252 L~~Ls~~~~~~~~~i~~~--g~i~~Lv~ll~~~~~e~~-~~---------~~~~~l~--~~a~~aL~nl~~~~~~~i~~l 317 (2100)
...++. .+..+..+... .-+|.|+.-|..++.+.. -+ ..+++++ .+-. .....
T Consensus 280 wla~ae-qpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhks------------k~~~~ 346 (885)
T KOG2023|consen 280 WLALAE-QPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKS------------KEHGN 346 (885)
T ss_pred HHHHhc-CcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhc------------hhccC
Confidence 999987 44555554432 456777666554431110 00 0000000 0000 00000
Q ss_pred ccc--ccCCCCh-----hhhhh-h-hhhhHHHHHHhccccCCCCCCCchhh----HHHHHhhcCCCCChHHHHHHHHHHH
Q 000133 318 GQS--LESCSSP-----AQVAD-T-LGALASALMIYDSKAESTKPSDPLIV----EQTLVNQFKPRLPFLVQERTIEALA 384 (2100)
Q Consensus 318 ~~~--~~~~~~~-----~~~~~-~-~gal~~ll~~l~~~~~~~~~~~~~~i----~~~Lv~lL~~~~~~~vq~~aa~aL~ 384 (2100)
+.. -++.... ....+ + ..+.+..+.++.. +-+..+ .|.|.+.|.+ ....+|+.+.-+++
T Consensus 347 ~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan-------vf~~elL~~l~PlLk~~L~~-~~W~vrEagvLAlG 418 (885)
T KOG2023|consen 347 GEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN-------VFGDELLPILLPLLKEHLSS-EEWKVREAGVLALG 418 (885)
T ss_pred ccccccccccccccccccccccccHhhccHHHHHHHHH-------hhHHHHHHHHHHHHHHHcCc-chhhhhhhhHHHHH
Confidence 000 0000000 00000 0 0112222222220 111234 4444444444 45678999999999
Q ss_pred HHhC--CCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCc--cchHHHHhCCcHHHHHHhhCCCCHHHHH
Q 000133 385 SLYG--NPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEG--SLWRALQGREGIQLLISLLGLSSEQQQE 460 (2100)
Q Consensus 385 ~L~~--~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~--~~~~~i~~~g~i~~Lv~lL~s~~~~v~~ 460 (2100)
.++. .......+. ..+|.|+.+|.++.+-||.-.||.|...+.--. ...+.+. ..+..|+..+-+++..||+
T Consensus 419 AIAEGcM~g~~p~Lp--eLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~--pvL~~ll~~llD~NK~VQE 494 (885)
T KOG2023|consen 419 AIAEGCMQGFVPHLP--ELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK--PVLEGLLRRLLDSNKKVQE 494 (885)
T ss_pred HHHHHHhhhcccchH--HHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH--HHHHHHHHHHhcccHHHHH
Confidence 8853 233344444 358889999999999999999999987654211 1111111 2334444444578999999
Q ss_pred HHHHHHHHhccCCcccHHHHHhcCChHHHHHhccC---CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHh--
Q 000133 461 CSVALLCLLSNENDDSKWAITAAGGIPPLVQILES---GSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLL-- 535 (2100)
Q Consensus 461 ~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~---~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL-- 535 (2100)
+|+.++..+-.. ....-..+-...+..|+..++. .+.-+...|..+|.+=+.+.-..+..+ +=.+|||++-.
T Consensus 495 AAcsAfAtleE~-A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~Yi--qiLmPPLi~KW~~ 571 (885)
T KOG2023|consen 495 AACSAFATLEEE-AGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYI--QILMPPLIEKWEL 571 (885)
T ss_pred HHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHH--HHhccHHHHHHHh
Confidence 999999988532 2111111122233444444432 244455667777766554311111111 12457776433
Q ss_pred -hcCChhHHHHHHHHHHHHhcC---C-CC---CcHHHHHHHh--------hcCC--------cchHHHHHHHHHHHHh-c
Q 000133 536 -KNGSANGKEIAAKTLNHLIHK---S-DT---ATISQLTALL--------TSDL--------PESKVYVLDALKSMLS-V 590 (2100)
Q Consensus 536 -~~~~~~~~~~Aa~aL~~L~~~---~-~~---~~i~~L~~lL--------~~~~--------~~~~~~a~~aL~~l~~-~ 590 (2100)
.+.+.+. ---..+|..++.. + -| ........++ +... .+.-.-+..-+..++. .
T Consensus 572 lsd~DKdL-fPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegL 650 (885)
T KOG2023|consen 572 LSDSDKDL-FPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGL 650 (885)
T ss_pred cCcccchH-HHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHh
Confidence 3333221 1111111111110 0 00 0111111111 1111 1111112222222222 1
Q ss_pred cCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHH
Q 000133 591 VSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRC 670 (2100)
Q Consensus 591 ~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~a 670 (2100)
.+ .++..+...+....+..++.+.-+++|+.|...|+.++....+.. ...-+..+|.+-.-+......+...|+++
T Consensus 651 g~---~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v-~p~~~~fl~~lg~Nl~~~~isv~nNA~WA 726 (885)
T KOG2023|consen 651 GS---HIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHV-IPNLADFLPILGANLNPENISVCNNAIWA 726 (885)
T ss_pred hh---chHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHhhcCChhhchHHHHHHHH
Confidence 11 123345556667788889999999999999999999987543211 11222345555555566666789999999
Q ss_pred HHHHhcCCchhHHHHHHhCCChHHHHHHhCCC--CHHHHHHHHHHHHHHhc-CcHHHHHHHHcCcHHHHHHHHccCChhH
Q 000133 671 LAAIFLSVRENREVAAVARDALSPLVVLAGSP--VLEVAEQATCALANLIL-DSEVSEKAIAEEIILPATRVLCEGTISG 747 (2100)
Q Consensus 671 L~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~--~~evr~~aa~aL~~L~~-~~~~~~~~v~~~~v~~L~~ll~~~~~~~ 747 (2100)
+|-++.......+. .-...+..|+..++.+ ..++-++.+.+++.|.. .++.....++.-.-|+...+-.-++++.
T Consensus 727 iGeia~k~g~~~~~--~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneE 804 (885)
T KOG2023|consen 727 IGEIALKMGLKMKQ--YVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEE 804 (885)
T ss_pred HHHHHHHhchhhhh--HHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchh
Confidence 99997654322221 2233556666666654 44577999999999984 3444444555566666666666777888
Q ss_pred HHHHHHHHHHHHhcCcc
Q 000133 748 KTLAAAAIARLLHSRKI 764 (2100)
Q Consensus 748 ~~~Aa~aL~~l~~~~~~ 764 (2100)
+..|-+.++++..-.+.
T Consensus 805 K~sAFrG~c~mi~vNp~ 821 (885)
T KOG2023|consen 805 KESAFRGLCNMINVNPS 821 (885)
T ss_pred HHHHHHHHHHheeeCch
Confidence 99999999999875554
No 44
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.04 E-value=4.1e-10 Score=118.25 Aligned_cols=116 Identities=21% Similarity=0.402 Sum_probs=95.7
Q ss_pred ceeeeeccchhhhhhCCCcceEEEecCC-CCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCc-ccc
Q 000133 1981 LVVIIKRGNNMKQSVGNPSVYCKLTLGN-TPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKS-SFG 2058 (2100)
Q Consensus 1981 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 2058 (2100)
|+|+|.+..++...+|.+.-||.+.+++ ...++|+|++++.||+|+|.|.|.+ ++.++.|.|+|++++.+|++ .+|
T Consensus 1 l~v~v~~A~~L~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~--~~~~~~l~~~v~d~~~~~~~~~lG 78 (126)
T cd08678 1 LLVKNIKANGLSEAAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFEL--SPNSKELLFEVYDNGKKSDSKFLG 78 (126)
T ss_pred CEEEEEEecCCCCCCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEe--CCCCCEEEEEEEECCCCCCCceEE
Confidence 6899999999988666688999999975 5668999999999999999998876 46688999999999999754 569
Q ss_pred eEEEEEeeEEeecccccceeecCCC-C-CCCCcceEEEEEec
Q 000133 2059 KVTIQIDRVVMLGAVAGEYTLLPES-K-SGPSRNLEIEFLWS 2098 (2100)
Q Consensus 2059 ~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~ 2098 (2100)
++.|+++.+...+.....|.|.+.. + ....-+|.++++|-
T Consensus 79 ~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~ 120 (126)
T cd08678 79 LAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFM 120 (126)
T ss_pred EEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEe
Confidence 9999999999988888899997652 1 22344577888874
No 45
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.01 E-value=4.6e-10 Score=116.66 Aligned_cols=103 Identities=23% Similarity=0.465 Sum_probs=88.5
Q ss_pred CCceeeeeccchhhh--hhCCCcceEEEecCCCCCcccccccc-CCCccccccceeccccCCCCCeEEEEeecCCccCCc
Q 000133 1979 GTLVVIIKRGNNMKQ--SVGNPSVYCKLTLGNTPPRQTKIVST-GPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKS 2055 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2055 (2100)
|.|.|+|.+..++.. .+|.+.-++.+.+|+ ..++|+++.+ +.||+|+|.|.|.+. ++..+.|.|+|++++.+|.+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-~~~kT~~~~~~~~nP~Wne~f~f~v~-~~~~~~l~i~v~d~~~~~~~ 78 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG-VTKKTKTDFRGGQHPEWDEELRFEIT-EDKKPILKVAVFDDDKRKPD 78 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECC-CccccccccCCCCCCccCceEEEEec-CCCCCEEEEEEEeCCCCCCc
Confidence 789999999999864 456677899999986 6678998865 689999999999887 44678999999999999988
Q ss_pred ccceEEEEEeeEEeecccccceeecCCC
Q 000133 2056 SFGKVTIQIDRVVMLGAVAGEYTLLPES 2083 (2100)
Q Consensus 2056 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2083 (2100)
.+|++.|++++++..+.....|.|...+
T Consensus 79 ~iG~~~~~l~~~~~~~~~~~w~~L~~~~ 106 (118)
T cd08681 79 LIGDTEVDLSPALKEGEFDDWYELTLKG 106 (118)
T ss_pred ceEEEEEecHHHhhcCCCCCcEEeccCC
Confidence 8999999999998887889999997654
No 46
>PTZ00429 beta-adaptin; Provisional
Probab=99.00 E-value=1.9e-06 Score=114.31 Aligned_cols=467 Identities=12% Similarity=0.092 Sum_probs=298.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHH
Q 000133 402 KRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAIT 481 (2100)
Q Consensus 402 i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~ 481 (2100)
.+-++.++.+++..+++-+.-.+.+.+..+++. .+ -++..|.+=+.++++-+|..|..+|+++-. ++....
T Consensus 70 F~dVvk~~~S~d~elKKLvYLYL~~ya~~~pel--al---LaINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~-- 140 (746)
T PTZ00429 70 FVDVVKLAPSTDLELKKLVYLYVLSTARLQPEK--AL---LAVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEY-- 140 (746)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcccChHH--HH---HHHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHH--
Confidence 445677888999999999999998887765542 12 356778888889999999999999888852 332222
Q ss_pred hcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC--
Q 000133 482 AAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT-- 559 (2100)
Q Consensus 482 ~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~-- 559 (2100)
.++++.+.+.+.++-||..|+.++.++...+++ .+.+.|.++.|.++|.+.++.+...|..+|..+......
T Consensus 141 ---l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l 214 (746)
T PTZ00429 141 ---TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI 214 (746)
T ss_pred ---HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh
Confidence 456788889999999999999999999875553 344577889999999999999999999999999764421
Q ss_pred ----CcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 000133 560 ----ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFET 635 (2100)
Q Consensus 560 ----~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~ 635 (2100)
..+..|+..+.+-++-.+...++.|.. ..+..+ .. ....+..+...|++.++.+...|+.++.++...
T Consensus 215 ~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~---y~P~~~--~e---~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 215 ESSNEWVNRLVYHLPECNEWGQLYILELLAA---QRPSDK--ES---AETLLTRVLPRMSHQNPAVVMGAIKVVANLASR 286 (746)
T ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHh---cCCCCc--HH---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence 334445555555444455555665543 222111 00 123477788889999999999999999999864
Q ss_pred C-hhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHH
Q 000133 636 R-KDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCAL 714 (2100)
Q Consensus 636 ~-~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL 714 (2100)
. ++....+ -....++|+.++ +++++++--+++.|.-+....+. +... .+..+.-...++. .+|......|
T Consensus 287 ~~~~~~~~~-~~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~~P~-----lf~~-~~~~Ff~~~~Dp~-yIK~~KLeIL 357 (746)
T PTZ00429 287 CSQELIERC-TVRVNTALLTLS-RRDAETQYIVCKNIHALLVIFPN-----LLRT-NLDSFYVRYSDPP-FVKLEKLRLL 357 (746)
T ss_pred CCHHHHHHH-HHHHHHHHHHhh-CCCccHHHHHHHHHHHHHHHCHH-----HHHH-HHHhhhcccCCcH-HHHHHHHHHH
Confidence 3 2322222 123447788775 45668898999888777554321 1111 2444444444444 4899999999
Q ss_pred HHHhcCcHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcccccch
Q 000133 715 ANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVAT 794 (2100)
Q Consensus 715 ~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~~ 794 (2100)
..|+..... . .++.-|.++..+.+.+.++.+.+++.++....+. ....++..|++++.. +.++.
T Consensus 358 ~~Lane~Nv-~-----~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~--------~a~~cV~~Ll~ll~~-~~~~v- 421 (746)
T PTZ00429 358 LKLVTPSVA-P-----EILKELAEYASGVDMVFVVEVVRAIASLAIKVDS--------VAPDCANLLLQIVDR-RPELL- 421 (746)
T ss_pred HHHcCcccH-H-----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH--------HHHHHHHHHHHHhcC-CchhH-
Confidence 988754332 2 3567778888888888999999999999864443 124556677777764 33455
Q ss_pred HhHHHHHHHHHHcCCCCCCCCcccceeeccCCCchhhhhhh---ccCChhHHHHHHHHHHHHhcCCcccchhcccccccc
Q 000133 795 SEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSI---ADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGC 871 (2100)
Q Consensus 795 ~~al~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l---~~~~~~~~~~a~~~L~~L~~~~~~~~g~~~~~~~~~ 871 (2100)
.+++.++.++.+..+.. ..+..|+..+ .-.++..+....+++.+|+. .|..+...
T Consensus 422 ~e~i~vik~IlrkyP~~--------------~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~--------~I~~a~~~ 479 (746)
T PTZ00429 422 PQVVTAAKDIVRKYPEL--------------LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCD--------FIENGKDI 479 (746)
T ss_pred HHHHHHHHHHHHHCccH--------------HHHHHHHHhhcccccccHHHHHHHHHHHHhhHh--------hHhhHHHH
Confidence 57888999987755430 1233333322 12357788888889988843 33332223
Q ss_pred hHHHHHHHhhcCCcceecchhhHHHHHhhhchhhHHhhhhccccchhhHHHHHHHHhhhcCCCCcCCCCChhHHHHHhhh
Q 000133 872 ISSIARRVISCTNPKVKIGGAALLICAAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAISIYRY 951 (2100)
Q Consensus 872 ~~~~~~~~l~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Lv~~l~~~~~~~~~~~~~~~~~~~~~l~~ 951 (2100)
...+++.|.+ ++.++|...--+.+++.-... ......+..++..+.... .++|.+..|.-..+.
T Consensus 480 L~~~i~~f~~-E~~~VqlqlLta~vKlfl~~p----------~~~~~~l~~vL~~~t~~~-----~d~DVRDRA~~Y~rL 543 (746)
T PTZ00429 480 IQRFIDTIME-HEQRVQLAILSAAVKMFLRDP----------QGMEPQLNRVLETVTTHS-----DDPDVRDRAFAYWRL 543 (746)
T ss_pred HHHHHhhhcc-CCHHHHHHHHHHHHHHHhcCc----------HHHHHHHHHHHHHHHhcC-----CChhHHHHHHHHHHH
Confidence 3333444433 456677654444444432210 011222333333332222 456777777777776
Q ss_pred hcc
Q 000133 952 TSE 954 (2100)
Q Consensus 952 l~~ 954 (2100)
|+.
T Consensus 544 Ls~ 546 (746)
T PTZ00429 544 LSK 546 (746)
T ss_pred HcC
Confidence 543
No 47
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=98.99 E-value=8.4e-10 Score=119.92 Aligned_cols=106 Identities=21% Similarity=0.365 Sum_probs=89.4
Q ss_pred CCceeeeeccchhhh--------------------------------hhCCCcceEEEecCCCCCccccccccCCCcccc
Q 000133 1979 GTLVVIIKRGNNMKQ--------------------------------SVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWE 2026 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026 (2100)
|+|-|+||+.+++.+ ..|.+..++.+++|+..-.+|||++++.||+||
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~Wn 86 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWN 86 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCccc
Confidence 788889998887754 344567899999987655689999999999999
Q ss_pred ccceeccccCCCCCeEEEEeecCCccCCcccceEEEEEeeEEeecccccceeecCCCCCC
Q 000133 2027 ESFAWSFEIPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVAGEYTLLPESKSG 2086 (2100)
Q Consensus 2027 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2086 (2100)
|.|.|.+. ..++.|.+.|||++.||.+.+|+++|+++++...+.+...|.|...++++
T Consensus 87 E~F~~~~~--~~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~ 144 (158)
T cd04015 87 ESFHIYCA--HYASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKP 144 (158)
T ss_pred eEEEEEcc--CCCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCC
Confidence 99998764 44689999999999999999999999999999888889999997664443
No 48
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.98 E-value=5.8e-09 Score=108.85 Aligned_cols=117 Identities=33% Similarity=0.407 Sum_probs=110.0
Q ss_pred HHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChh
Q 000133 438 LQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSED 517 (2100)
Q Consensus 438 i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~ 517 (2100)
+.+.|+++.|++++.++++.++..++++|.+++...++....+.+.|+++.|++++.+++++++..++++|++|+...+.
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 55779999999999999999999999999999987788999999999999999999999999999999999999998777
Q ss_pred hHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHh
Q 000133 518 IRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLI 554 (2100)
Q Consensus 518 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~ 554 (2100)
.+..+.+.|+++.|++++.+.+.++++.++++|++|+
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 8888889999999999999999999999999999986
No 49
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=98.97 E-value=1.5e-09 Score=111.48 Aligned_cols=102 Identities=17% Similarity=0.319 Sum_probs=84.7
Q ss_pred CCCceeeeeccchhhhh-hCCCcceEEEecCCCCCcccccccc-CCCccccccceeccccCCCCCeEEEEeecCCccCCc
Q 000133 1978 PGTLVVIIKRGNNMKQS-VGNPSVYCKLTLGNTPPRQTKIVST-GPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKS 2055 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2055 (2100)
.|+|.|+|....+++.. +|.+.-+|.+++|+. ..+|||+.+ +.||+|||.|.+.+. +..+.|+++++|++.||++
T Consensus 1 ~g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~-~~kT~v~~~~~~nP~WNe~F~f~v~--~~~~~l~~~V~d~d~~~~d 77 (121)
T cd04016 1 VGRLSITVVQAKLVKNYGLTRMDPYCRIRVGHA-VYETPTAYNGAKNPRWNKTIQCTLP--EGVDSIYIEIFDERAFTMD 77 (121)
T ss_pred CcEEEEEEEEccCCCcCCCCCCCceEEEEECCE-EEEeEEccCCCCCCccCeEEEEEec--CCCcEEEEEEEeCCCCcCC
Confidence 38999999999887644 477889999999874 457999876 699999999999865 3457899999999999985
Q ss_pred -ccceEEEEEeeEEeecc-cccceeecCC
Q 000133 2056 -SFGKVTIQIDRVVMLGA-VAGEYTLLPE 2082 (2100)
Q Consensus 2056 -~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 2082 (2100)
.+|++.|++.+.+..|. +.+-|.|.+.
T Consensus 78 d~iG~~~i~l~~~~~~g~~~~~W~~L~~~ 106 (121)
T cd04016 78 ERIAWTHITIPESVFNGETLDDWYSLSGK 106 (121)
T ss_pred ceEEEEEEECchhccCCCCccccEeCcCc
Confidence 67999999987676665 7888999764
No 50
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.97 E-value=5.2e-06 Score=99.73 Aligned_cols=470 Identities=13% Similarity=0.074 Sum_probs=265.3
Q ss_pred cCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCC-HHHHHHHHHHHHHhh-cCChHhHHHHHh-CCCh
Q 000133 196 LGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNE-ASVRAEAAGALKSLS-DHCKDARREIAG-SNGI 272 (2100)
Q Consensus 196 s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~v~~~Aa~aL~~Ls-~~~~~~~~~i~~-~g~i 272 (2100)
++|+.++.++-.-|.++..++ ...+ +..+++.+-+.+. .+.|..|.-+|.|-- .++++-++...+ +-++
T Consensus 16 spD~n~rl~aE~ql~~l~~~d---F~qf-----~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~ 87 (858)
T COG5215 16 SPDPNARLRAEAQLLELQSGD---FEQF-----ISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGM 87 (858)
T ss_pred CCCCCccccHHHHHHHhcccc---HHHH-----HHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccC
Confidence 467777766666665665443 2232 4455555544332 578888888887743 333333333222 1112
Q ss_pred HHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCC
Q 000133 273 PAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTK 352 (2100)
Q Consensus 273 ~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~ 352 (2100)
+ .+..+.+...+.++|. . --|++....+...++++. ++ -..
T Consensus 88 ~---------------~E~k~qvK~~al~aL~---s-------------~epr~~~~Aaql~aaIA~----~E----lp~ 128 (858)
T COG5215 88 R---------------HESKEQVKGMALRALK---S-------------PEPRFCTMAAQLLAAIAR----ME----LPN 128 (858)
T ss_pred C---------------HHHHHHHHHHHHHHhc---C-------------CccHHHHHHHHHHHHHHH----hh----Ccc
Confidence 1 1222444455555543 1 013333333333344332 11 000
Q ss_pred CCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccH-HHH-HHhhc-CCCHHHHHHHHHHHHH-hh
Q 000133 353 PSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAK-RLL-VGLIT-MATNEVQEELVRALLK-LC 428 (2100)
Q Consensus 353 ~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i-~~L-v~lL~-~~~~~v~~~A~~aL~~-L~ 428 (2100)
..- .++...++.-...+.+...+..+...+++......-...+.....+ -.+ ...++ .++..+|..|+.+|.+ +-
T Consensus 129 ~~w-p~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~ 207 (858)
T COG5215 129 SLW-PGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLM 207 (858)
T ss_pred ccc-hHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH
Confidence 001 1344445555555666667777777777663322112222222221 112 22233 3467899999999988 32
Q ss_pred ccCccchHHHHhCC-cHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHH
Q 000133 429 NNEGSLWRALQGRE-GIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASI 507 (2100)
Q Consensus 429 ~~~~~~~~~i~~~g-~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~a 507 (2100)
.-...+... .+.+ .++...+.-+.++.++|..|-.+|+.+..-.-..-+...+.--.....+.+.+.++++.-+|..-
T Consensus 208 fv~~nf~~E-~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEf 286 (858)
T COG5215 208 FVQGNFCYE-EERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEF 286 (858)
T ss_pred HHHHhhcch-hhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence 211111100 0112 35667777788899999999999998864333333333333333445567788899998888877
Q ss_pred HHHHhcCChhhHHHH------------------HhCCcHHHHHHHhhc-------CChhHHHHHHHHHHHHhcCCCCCcH
Q 000133 508 LRNLCNHSEDIRACV------------------ESADAVPALLWLLKN-------GSANGKEIAAKTLNHLIHKSDTATI 562 (2100)
Q Consensus 508 L~~L~~~~~~~~~~i------------------~~~g~i~~Lv~lL~~-------~~~~~~~~Aa~aL~~L~~~~~~~~i 562 (2100)
-..+|.. ++-... .-..++|.|+.+|.. .+|..-..|..+|.-.+....+..+
T Consensus 287 WsticeE--eid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~ 364 (858)
T COG5215 287 WSTICEE--EIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIM 364 (858)
T ss_pred HHHHHHH--HhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhH
Confidence 6677753 111100 013378999999976 2466777788888777665556677
Q ss_pred HHHHHH----hhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChh
Q 000133 563 SQLTAL----LTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKD 638 (2100)
Q Consensus 563 ~~L~~l----L~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~ 638 (2100)
.+.++. ++++++..|+.+..++|++..- ++.+.....+ ..++|.+...+.++.-.++..++||++.|+..-+
T Consensus 365 ~pVl~FvEqni~~~~w~nreaavmAfGSvm~g-p~~~~lT~~V--~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va- 440 (858)
T COG5215 365 RPVLGFVEQNIRSESWANREAAVMAFGSVMHG-PCEDCLTKIV--PQALPGIENEMSDSCLWVKSTTAWCFGAIADHVA- 440 (858)
T ss_pred HHHHHHHHHhccCchhhhHHHHHHHhhhhhcC-ccHHHHHhhH--HhhhHHHHHhcccceeehhhHHHHHHHHHHHHHH-
Confidence 776665 6678888999999999976532 2333333333 4568999999998888999999999999996533
Q ss_pred hHHHHHhcCchHHHHHhh---cCCCHHHHHHHHHHHHHHhcCCchhHH--HHHHhCCChHHHH-HHhC-----CCCHHHH
Q 000133 639 LRESSIAVKTLWSVMKLL---DVGSECILVEASRCLAAIFLSVRENRE--VAAVARDALSPLV-VLAG-----SPVLEVA 707 (2100)
Q Consensus 639 ~~~~~~~~g~v~~Lv~lL---~~~~~~v~~~aa~aL~~L~~~~~~~~~--~~~~~~~~l~~Lv-~ll~-----~~~~evr 707 (2100)
+.+.-.|-+++.+..+ -.+++.+...+++...|++.+.+...+ ..++ ...-+.++ .|++ ......|
T Consensus 441 --~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l-~~fY~ai~~~Lv~~t~~~~Ne~n~R 517 (858)
T COG5215 441 --MIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFL-AKFYLAILNALVKGTELALNESNLR 517 (858)
T ss_pred --HhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchh-HHHHHHHHHHHHHHHHhhccchhHH
Confidence 3343444444444332 123457888999999999877654221 1111 12223333 2222 2344578
Q ss_pred HHHHHHHHHHhcCcHH
Q 000133 708 EQATCALANLILDSEV 723 (2100)
Q Consensus 708 ~~aa~aL~~L~~~~~~ 723 (2100)
..+-.||+.|+.-.++
T Consensus 518 ~s~fsaLgtli~~~~d 533 (858)
T COG5215 518 VSLFSALGTLILICPD 533 (858)
T ss_pred HHHHHHHHHHHhhcch
Confidence 8888999998755443
No 51
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=98.94 E-value=1.6e-09 Score=113.79 Aligned_cols=116 Identities=20% Similarity=0.326 Sum_probs=93.7
Q ss_pred CCceeeeeccchhhh-h-h-CCCcceEEEecCC-CCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCC
Q 000133 1979 GTLVVIIKRGNNMKQ-S-V-GNPSVYCKLTLGN-TPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGK 2054 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~-~-~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2054 (2100)
|+|.|+|++..+++. . . |...-++.+.+++ ....+|++++++.+|+|+|.|.|.+. +.++.|.++|++++.|++
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~--~~~~~l~~~v~d~~~~~~ 79 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVN--SLTEPLNLTVYDFNDKRK 79 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeC--CCCCEEEEEEEecCCCCC
Confidence 889999999999983 3 2 3467899999988 58899999999999999999998766 678999999999999966
Q ss_pred -cccceEEEEEeeEEeecccccc-eeecCCCC-CCCCcceEEEEEecC
Q 000133 2055 -SSFGKVTIQIDRVVMLGAVAGE-YTLLPESK-SGPSRNLEIEFLWSN 2099 (2100)
Q Consensus 2055 -~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~ 2099 (2100)
+.+|++.++++++...+.+.+. +.+..++| .| .|.+++.|-+
T Consensus 80 d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G---~i~~~l~~~p 124 (124)
T cd04044 80 DKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVG---ELNYDLRFFP 124 (124)
T ss_pred CceeEEEEEEHHHhccCccccCcchhhhcCCccce---EEEEEEEeCC
Confidence 4569999999999988887643 44433333 33 4668888853
No 52
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=98.92 E-value=2.9e-09 Score=110.46 Aligned_cols=99 Identities=24% Similarity=0.367 Sum_probs=85.8
Q ss_pred ceeeeeccchhhhhhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCcccceE
Q 000133 1981 LVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKSSFGKV 2060 (2100)
Q Consensus 1981 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2060 (2100)
|+|+|.+..++... .+.-|+.+++|+ ..++|||++++.||+|||.|.|... .|.++.|.++|+++++++.+.+|++
T Consensus 2 L~V~Vi~a~~L~~~--~~Dpyv~v~l~~-~~~kT~v~~~t~nP~Wne~F~f~~~-~~~~~~L~~~v~d~d~~~~~~lG~~ 77 (121)
T cd08378 2 LYVRVVKARGLPAN--SNDPVVEVKLGN-YKGSTKAIERTSNPEWNQVFAFSKD-RLQGSTLEVSVWDKDKAKDDFLGGV 77 (121)
T ss_pred EEEEEEEecCCCcc--cCCCEEEEEECC-ccccccccCCCCCCccceEEEEEcC-CCcCCEEEEEEEeCCCCcCceeeeE
Confidence 78999999999888 566799999986 6889999999999999999999976 5578899999999999988899999
Q ss_pred EEEEeeEEeecc-----cccceeecCCC
Q 000133 2061 TIQIDRVVMLGA-----VAGEYTLLPES 2083 (2100)
Q Consensus 2061 ~~~~~~~~~~~~-----~~~~~~~~~~~ 2083 (2100)
+|.++++...+. .+.-|.|.+..
T Consensus 78 ~i~l~~l~~~~~~~~~~~~~W~~L~~~~ 105 (121)
T cd08378 78 CFDLSEVPTRVPPDSPLAPQWYRLEDKK 105 (121)
T ss_pred EEEhHhCcCCCCCCCCCCcceEEccCCC
Confidence 999999876442 56789996553
No 53
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.91 E-value=1.1e-08 Score=106.88 Aligned_cols=118 Identities=25% Similarity=0.374 Sum_probs=109.4
Q ss_pred hhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcc
Q 000133 396 LENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDD 475 (2100)
Q Consensus 396 l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~ 475 (2100)
+.+.|+++.++.++.+.++.++..++.+|.+++.+.+.....+.+.|+++.+++++.++++.++..++++|+||+...+.
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 34678999999999999999999999999999999888888888999999999999999999999999999999986667
Q ss_pred cHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 000133 476 SKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCN 513 (2100)
Q Consensus 476 ~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~ 513 (2100)
....+.+.|+++.|++++.+.+.++++.++++|.+|+.
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 78888999999999999999999999999999999973
No 54
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=98.91 E-value=2.7e-09 Score=113.77 Aligned_cols=105 Identities=25% Similarity=0.384 Sum_probs=87.4
Q ss_pred ceeeeeccchhhhhhCCCcceEEEecCCC----CCccccccccCCCccccccceeccccC----------C----CCCeE
Q 000133 1981 LVVIIKRGNNMKQSVGNPSVYCKLTLGNT----PPRQTKIVSTGPNPEWEESFAWSFEIP----------P----KGQKL 2042 (2100)
Q Consensus 1981 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~----~~~~~ 2042 (2100)
|+|+|.+..++....|...-|+.++++.+ ..++|||++++.||+|||.|.|.+..+ | ....|
T Consensus 2 L~V~Vi~ArnL~~~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L 81 (148)
T cd04010 2 LSVRVIECSDLALKNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLEL 81 (148)
T ss_pred EEEEEEeCcCCCCCCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEEE
Confidence 78999999999887777778888888754 577899999999999999999998521 2 23479
Q ss_pred EEEeecCCccCCcc-cceEEEEEeeEEee-cccccceeecCC-CCC
Q 000133 2043 HISCKNKSKMGKSS-FGKVTIQIDRVVML-GAVAGEYTLLPE-SKS 2085 (2100)
Q Consensus 2043 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~ 2085 (2100)
.|.||+++.|+++. +|++.|++..+-.. +...+-|.|.+. +++
T Consensus 82 ~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~ 127 (148)
T cd04010 82 RVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKS 127 (148)
T ss_pred EEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCccccc
Confidence 99999999997665 69999999998876 678899999766 444
No 55
>PTZ00429 beta-adaptin; Provisional
Probab=98.90 E-value=4e-05 Score=102.02 Aligned_cols=470 Identities=14% Similarity=0.074 Sum_probs=302.4
Q ss_pred CCHHHHHHhHccCCHHHHHHHHH-HHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhH
Q 000133 185 GGIDILVKLLTLGQSSTQAHVCF-LLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDAR 263 (2100)
Q Consensus 185 g~v~~Lv~lL~s~~~~v~~~a~~-~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~ 263 (2100)
|=+..|-..|.+.+...+..+.+ +++.++.+.. . ....+..++++.+. |.++|+.+--.|.+.+..+++.-
T Consensus 32 ge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~D-v------S~LF~dVvk~~~S~-d~elKKLvYLYL~~ya~~~pela 103 (746)
T PTZ00429 32 GEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRD-V------SYLFVDVVKLAPST-DLELKKLVYLYVLSTARLQPEKA 103 (746)
T ss_pred chHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC-c------hHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcccChHHH
Confidence 44566777788877766655554 5554444432 2 22356666777764 57899999999999887655431
Q ss_pred HHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHH
Q 000133 264 REIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMI 343 (2100)
Q Consensus 264 ~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~ 343 (2100)
.. .+..+..=+.+++ +-++..|+++|.++... ..++
T Consensus 104 lL-----aINtl~KDl~d~N---------p~IRaLALRtLs~Ir~~-------------------------~i~e----- 139 (746)
T PTZ00429 104 LL-----AVNTFLQDTTNSS---------PVVRALAVRTMMCIRVS-------------------------SVLE----- 139 (746)
T ss_pred HH-----HHHHHHHHcCCCC---------HHHHHHHHHHHHcCCcH-------------------------HHHH-----
Confidence 11 2455555555443 66777777777754431 0111
Q ss_pred hccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhC-CCccchhhhccccHHHHHHhhcCCCHHHHHHHHH
Q 000133 344 YDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYG-NPLLSIKLENSEAKRLLVGLITMATNEVQEELVR 422 (2100)
Q Consensus 344 l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~-~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~ 422 (2100)
.+.+.+.+.+.+. +..||..|+.|+..++. +|+ .+.+.+.++.|.+++.+.++.|+.+|+.
T Consensus 140 --------------~l~~~lkk~L~D~-~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~ 201 (746)
T PTZ00429 140 --------------YTLEPLRRAVADP-DPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAA 201 (746)
T ss_pred --------------HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHH
Confidence 1233345555443 45689999999999965 343 3344567788999999999999999999
Q ss_pred HHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHH
Q 000133 423 ALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKE 502 (2100)
Q Consensus 423 aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre 502 (2100)
+|..++..++..... ..+.+..|+..+..-++-.|.....+|.... +...... ...+..+...|.+.++.|.-
T Consensus 202 aL~eI~~~~~~~l~l--~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~---P~~~~e~--~~il~~l~~~Lq~~N~AVVl 274 (746)
T PTZ00429 202 IVCEVNDYGSEKIES--SNEWVNRLVYHLPECNEWGQLYILELLAAQR---PSDKESA--ETLLTRVLPRMSHQNPAVVM 274 (746)
T ss_pred HHHHHHHhCchhhHH--HHHHHHHHHHHhhcCChHHHHHHHHHHHhcC---CCCcHHH--HHHHHHHHHHhcCCCHHHHH
Confidence 999998765442222 2355677778787777878877777775533 2222211 23567788888889999999
Q ss_pred HHHHHHHHHhcCC-hhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHh---hcCCcchHH
Q 000133 503 DSASILRNLCNHS-EDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALL---TSDLPESKV 578 (2100)
Q Consensus 503 ~A~~aL~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL---~~~~~~~~~ 578 (2100)
.|+.++.++.... ++....+. ....++|+.++ +++++++-.+...+..+.... +..+.+-...+ .++...+|.
T Consensus 275 ~Aik~il~l~~~~~~~~~~~~~-~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~~-P~lf~~~~~~Ff~~~~Dp~yIK~ 351 (746)
T PTZ00429 275 GAIKVVANLASRCSQELIERCT-VRVNTALLTLS-RRDAETQYIVCKNIHALLVIF-PNLLRTNLDSFYVRYSDPPFVKL 351 (746)
T ss_pred HHHHHHHHhcCcCCHHHHHHHH-HHHHHHHHHhh-CCCccHHHHHHHHHHHHHHHC-HHHHHHHHHhhhcccCCcHHHHH
Confidence 9999999998642 22221111 11336777774 567889988888887776543 33333333322 233445777
Q ss_pred HHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcC
Q 000133 579 YVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDV 658 (2100)
Q Consensus 579 ~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~ 658 (2100)
..++.|..++...+..+ .+..|.++..+.+.+.++.+..++++++...+.. ....+..|+.++..
T Consensus 352 ~KLeIL~~Lane~Nv~~----------IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~-----a~~cV~~Ll~ll~~ 416 (746)
T PTZ00429 352 EKLRLLLKLVTPSVAPE----------ILKELAEYASGVDMVFVVEVVRAIASLAIKVDSV-----APDCANLLLQIVDR 416 (746)
T ss_pred HHHHHHHHHcCcccHHH----------HHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHH-----HHHHHHHHHHHhcC
Confidence 77777776665444322 2566777888889999999999999999764432 33567888899876
Q ss_pred CCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHh---CCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHH
Q 000133 659 GSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLA---GSPVLEVAEQATCALANLILDSEVSEKAIAEEIILP 735 (2100)
Q Consensus 659 ~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll---~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~ 735 (2100)
+.. +..++...+.++.+..++. ..++.|+..+ .-.+++.|...+|.++.....-+. ..+.+..
T Consensus 417 ~~~-~v~e~i~vik~IlrkyP~~--------~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~-----a~~~L~~ 482 (746)
T PTZ00429 417 RPE-LLPQVVTAAKDIVRKYPEL--------LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN-----GKDIIQR 482 (746)
T ss_pred Cch-hHHHHHHHHHHHHHHCccH--------HHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh-----HHHHHHH
Confidence 543 5567888888886654321 1245555433 235677777778888876532111 2345555
Q ss_pred HHHHHccCChhHHHHHHHHHHHHHhcCc
Q 000133 736 ATRVLCEGTISGKTLAAAAIARLLHSRK 763 (2100)
Q Consensus 736 L~~ll~~~~~~~~~~Aa~aL~~l~~~~~ 763 (2100)
++.-...++..+|.+...+...+.-..+
T Consensus 483 ~i~~f~~E~~~VqlqlLta~vKlfl~~p 510 (746)
T PTZ00429 483 FIDTIMEHEQRVQLAILSAAVKMFLRDP 510 (746)
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHhcCc
Confidence 5555566777799999999888887655
No 56
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=98.89 E-value=3.4e-09 Score=112.03 Aligned_cols=117 Identities=20% Similarity=0.354 Sum_probs=93.3
Q ss_pred CCceeeeeccchhhh--h--hCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCC
Q 000133 1979 GTLVVIIKRGNNMKQ--S--VGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGK 2054 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2054 (2100)
|+|.|+|++..++.. . .|.+.-|+.+.+| +...+|++++++.+|.|+|.|.|.... +.++.|.|+|+++..+|+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~-~~~~kT~~~~~t~~P~Wne~f~~~~~~-~~~~~l~i~v~d~~~~~~ 78 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVG-AQRFKTQTIPNTLNPKWNYWCEFPIFS-AQNQLLKLILWDKDRFAG 78 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEEC-CEEEecceecCCcCCccCCcEEEEecC-CCCCEEEEEEEECCCCCC
Confidence 899999999999864 3 4567788899886 457899999999999999999998874 678999999999999965
Q ss_pred -cccceEEEEEeeEEe---ecccccceeecCCCCC---CCCcceEEEEEe
Q 000133 2055 -SSFGKVTIQIDRVVM---LGAVAGEYTLLPESKS---GPSRNLEIEFLW 2097 (2100)
Q Consensus 2055 -~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 2097 (2100)
+.+|+++|+++++.. .+....-|.|.+.+.. ...=.+.++|.|
T Consensus 79 ~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 79 KDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 556999999999983 4556777898766211 123346688888
No 57
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=98.89 E-value=2.1e-09 Score=108.88 Aligned_cols=97 Identities=26% Similarity=0.506 Sum_probs=84.7
Q ss_pred Cceeeeeccchhhhh--hCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCccc
Q 000133 1980 TLVVIIKRGNNMKQS--VGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKSSF 2057 (2100)
Q Consensus 1980 ~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2057 (2100)
.|+|+|.+..++... .|.+.-|+.+++|+ .+++|+|++++.||+|||.|.|.+. +|..+.|.|+|+++++ .+.+
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-~~~kT~v~~~t~nP~Wne~f~f~v~-~~~~~~l~v~v~d~~~--~~~i 76 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGK-TTQKSKVKERTNNPVWEEGFTFLVR-NPENQELEIEVKDDKT--GKSL 76 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECC-EEEeCccccCCCCCcccceEEEEeC-CCCCCEEEEEEEECCC--CCcc
Confidence 489999999999764 34577999999986 7889999999999999999999998 5678899999999887 6789
Q ss_pred ceEEEEEeeEEeec--ccccceeec
Q 000133 2058 GKVTIQIDRVVMLG--AVAGEYTLL 2080 (2100)
Q Consensus 2058 ~~~~~~~~~~~~~~--~~~~~~~~~ 2080 (2100)
|+++|+++++...+ ...+-|.|.
T Consensus 77 G~~~i~l~~l~~~~~~~~~~w~~L~ 101 (105)
T cd04050 77 GSLTLPLSELLKEPDLTLDQPFPLD 101 (105)
T ss_pred EEEEEEHHHhhccccceeeeeEecC
Confidence 99999999998754 678888884
No 58
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=98.88 E-value=3.1e-09 Score=109.88 Aligned_cols=103 Identities=26% Similarity=0.424 Sum_probs=86.8
Q ss_pred ceeeeeccch---hhhh--hCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCcc---
Q 000133 1981 LVVIIKRGNN---MKQS--VGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKM--- 2052 (2100)
Q Consensus 1981 ~~~~~~r~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 2052 (2100)
|.|+|.+..+ ++.. .|.+.-|+.+++|+..- +||+++++.||+|||.|.|.+..+. +.|.|.|+|++.+
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~-rTk~~~~~~nP~WnE~f~f~v~~~~--~~l~v~V~d~d~~~~~ 78 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWV-RTRTVEDSSNPRWNEQYTWPVYDPC--TVLTVGVFDNSQSHWK 78 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECCEEe-EcCcccCCCCCcceeEEEEEecCCC--CEEEEEEEECCCcccc
Confidence 7899998887 6543 46677999999987644 6999999999999999999987433 4899999999987
Q ss_pred ----CCcccceEEEEEeeEEeecccccceeecCCCCCC
Q 000133 2053 ----GKSSFGKVTIQIDRVVMLGAVAGEYTLLPESKSG 2086 (2100)
Q Consensus 2053 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2086 (2100)
+.+.+|++.|++..+...+.+...|.|...++.|
T Consensus 79 ~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~ 116 (126)
T cd08379 79 EAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSG 116 (126)
T ss_pred ccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCC
Confidence 7788899999999999999999999998654333
No 59
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.87 E-value=5.1e-09 Score=110.26 Aligned_cols=112 Identities=21% Similarity=0.381 Sum_probs=89.4
Q ss_pred eccchhhhhhCCCcceEEEecCCCCCccccccccCCCccccccceeccccC-CCCCeEEEEeecCCccCC-cccceEEEE
Q 000133 1986 KRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIP-PKGQKLHISCKNKSKMGK-SSFGKVTIQ 2063 (2100)
Q Consensus 1986 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 2063 (2100)
....++...+|.+.-++.+.++. .+++|+|++++.||+|+|.|.|.+..+ ..+++|.++|++++.+|+ +.+|++++.
T Consensus 3 i~a~~L~~~~g~~Dpyv~v~~~~-~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~ 81 (127)
T cd08373 3 VSLKNLPGLKGKGDRIAKVTFRG-VKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATVS 81 (127)
T ss_pred EEeeCCcccCCCCCCEEEEEECC-EeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEEE
Confidence 34445555677788899999964 568999999999999999999999866 467899999999999987 556999999
Q ss_pred EeeEEeecccccceeecCCCCCCCCcceEEEEEec
Q 000133 2064 IDRVVMLGAVAGEYTLLPESKSGPSRNLEIEFLWS 2098 (2100)
Q Consensus 2064 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2098 (2100)
++++...+.....|.|...++++....+.+++.+.
T Consensus 82 l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~ 116 (127)
T cd08373 82 LQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQ 116 (127)
T ss_pred hhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEe
Confidence 99999999999999997664443334566666553
No 60
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=98.85 E-value=3e-09 Score=107.98 Aligned_cols=105 Identities=23% Similarity=0.265 Sum_probs=86.6
Q ss_pred CCceeeeeccchhhhhhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCcccc
Q 000133 1979 GTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKSSFG 2058 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2058 (2100)
|.|.|+|.+..++... |...-++.+++|+. ...|++++. .||+|||.|.|..+. .+++|.|+++||+.++.+.+|
T Consensus 2 ~~L~V~Vv~Ar~L~~~-~~~dPYV~Ik~g~~-k~kT~v~~~-~nP~WnE~F~F~~~~--~~~~L~v~V~dkd~~~DD~lG 76 (127)
T cd08394 2 SLLCVLVKKAKLDGAP-DKFNTYVTLKVQNV-KSTTIAVRG-SQPCWEQDFMFEINR--LDLGLVIELWNKGLIWDTLVG 76 (127)
T ss_pred ceEEEEEEEeeCCCCC-CCCCCeEEEEECCE-EeEeeECCC-CCCceeeEEEEEEcC--CCCEEEEEEEeCCCcCCCceE
Confidence 5789999999999653 44456999999874 458889987 599999999999873 333499999999999999999
Q ss_pred eEEEEEeeEEeeccc--ccceeecCC--CCCCCC
Q 000133 2059 KVTIQIDRVVMLGAV--AGEYTLLPE--SKSGPS 2088 (2100)
Q Consensus 2059 ~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~ 2088 (2100)
+|+|++.+|...... -.-|.|.|+ +++|..
T Consensus 77 ~v~i~L~~v~~~~~~~~~~Wy~L~~~~~~~~~~~ 110 (127)
T cd08394 77 TVWIPLSTIRQSNEEGPGEWLTLDSEVNMKNGQI 110 (127)
T ss_pred EEEEEhHHcccCCCCCCCccEecChHHhccCCeE
Confidence 999999999987655 566999998 777753
No 61
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=98.85 E-value=5.6e-09 Score=110.53 Aligned_cols=103 Identities=25% Similarity=0.417 Sum_probs=86.3
Q ss_pred CCCceeeeeccchhhhh---hCCCcceEEEecCCC----CCccccccccCCCccccccceeccccCCCCCeEEEEee-cC
Q 000133 1978 PGTLVVIIKRGNNMKQS---VGNPSVYCKLTLGNT----PPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCK-NK 2049 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 2049 (2100)
.|.|+|+|.+..|+.-. .|.+.-|.++.+... ..|+|||++++.||+|||.|.|.+. +.+..|.|+|+ ++
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~--l~~~~L~v~V~~d~ 105 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS--PTGKTLQVIVWGDY 105 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc--CCCCEEEEEEEeCC
Confidence 48899999999999753 455667777777433 4789999999999999999999887 78889999999 57
Q ss_pred CccCCc-ccceEEEEEeeEEeecccccceeecCC
Q 000133 2050 SKMGKS-SFGKVTIQIDRVVMLGAVAGEYTLLPE 2082 (2100)
Q Consensus 2050 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2082 (2100)
+.|+++ .+|.+.|+++++-..+.+..-|.|.+.
T Consensus 106 ~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 106 GRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 777554 569999999998778889999999887
No 62
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=98.85 E-value=4e-09 Score=111.02 Aligned_cols=115 Identities=24% Similarity=0.362 Sum_probs=91.0
Q ss_pred ceeeeeccchhhh--hhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCC--CCeEEEEeecCCccC--C
Q 000133 1981 LVVIIKRGNNMKQ--SVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPK--GQKLHISCKNKSKMG--K 2054 (2100)
Q Consensus 1981 ~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~ 2054 (2100)
|+|+|.+..++.. ..|.+.-++.+.+|+ ..++|+|+.++.||.|||.|.|.+..|.. .+.|.|.|++++.|+ .
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDG-QKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECC-EEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 7899999999964 456677899999985 56789999999999999999999986554 469999999999985 6
Q ss_pred cccceEEEEEeeEEee-cccccceeecCCCCCCCCcceEEEEEe
Q 000133 2055 SSFGKVTIQIDRVVML-GAVAGEYTLLPESKSGPSRNLEIEFLW 2097 (2100)
Q Consensus 2055 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2097 (2100)
+.+|+|.|.++.+... ..-..-|+|...++.++.| =||.+.+
T Consensus 81 ~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~-G~l~l~~ 123 (127)
T cd04022 81 SFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVR-GEIGLKV 123 (127)
T ss_pred CeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCcc-EEEEEEE
Confidence 6779999999999843 3446678996555555555 3666654
No 63
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=98.84 E-value=6.6e-09 Score=107.59 Aligned_cols=100 Identities=18% Similarity=0.279 Sum_probs=81.8
Q ss_pred cCCCceeeeeccchhhh-hhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCc
Q 000133 1977 LPGTLVVIIKRGNNMKQ-SVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKS 2055 (2100)
Q Consensus 1977 i~~~~~~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2055 (2100)
-.|.|.|+|.+..++.. ..|.+.-|+++.+|+. .++|||++++.||+|+|.|.+....++.++.|.|+|+++++||++
T Consensus 26 ~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~-~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~d 104 (127)
T cd04032 26 GLATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQ-EKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDD 104 (127)
T ss_pred CcEEEEEEEEECCCCCcCcCCCCCeEEEEEECCc-cccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCC
Confidence 35889999999999974 3345668888998754 889999999999999999999755466889999999999999766
Q ss_pred c-cceEEEEEeeEEeecccccceeecC
Q 000133 2056 S-FGKVTIQIDRVVMLGAVAGEYTLLP 2081 (2100)
Q Consensus 2056 ~-~~~~~~~~~~~~~~~~~~~~~~~~~ 2081 (2100)
. +|++.|.++-.. -+.+|+++|
T Consensus 105 d~IG~~~i~l~~~~----~~~~~~~~~ 127 (127)
T cd04032 105 DLLGTCSVVPEAGV----HEDSCQLNH 127 (127)
T ss_pred CeeEEEEEEecCCc----eeeeeecCC
Confidence 6 599999999444 337788754
No 64
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=98.83 E-value=8.5e-09 Score=108.00 Aligned_cols=116 Identities=28% Similarity=0.472 Sum_probs=92.6
Q ss_pred CceeeeeccchhhhhhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCcc-cc
Q 000133 1980 TLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKSS-FG 2058 (2100)
Q Consensus 1980 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 2058 (2100)
.|+|+|....++... |.+.-+|++.+|+....+||| +++.||.|||.|.|.. .+|.-+.++|.|++++.||++. +|
T Consensus 5 ~L~V~Vi~A~~L~~~-~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~-~~~~~~~l~v~v~d~~~~~~d~~iG 81 (126)
T cd08400 5 SLQLNVLEAHKLPVK-HVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDD-LPPDVNSFTISLSNKAKRSKDSEIA 81 (126)
T ss_pred EEEEEEEEeeCCCCC-CCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEec-CCCCcCEEEEEEEECCCCCCCCeEE
Confidence 489999999999864 667789999998766678997 4689999999999864 3565578999999999998876 59
Q ss_pred eEEEEEeeEEeecccccceeecCCCC--CCCCcceEEEEEec
Q 000133 2059 KVTIQIDRVVMLGAVAGEYTLLPESK--SGPSRNLEIEFLWS 2098 (2100)
Q Consensus 2059 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 2098 (2100)
+++|++.++...+.+..-|.|.+.++ .+..-.|.+.+.+.
T Consensus 82 ~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~ 123 (126)
T cd08400 82 EVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYS 123 (126)
T ss_pred EEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEE
Confidence 99999999999999999999988743 22223344555553
No 65
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=98.81 E-value=5.9e-09 Score=108.36 Aligned_cols=102 Identities=24% Similarity=0.344 Sum_probs=83.3
Q ss_pred CCCceeeeeccchhhhhh-CCCcceEEEecCC----CCCccccccccCCCccccccceecc-c-cCCCCCeEEEEeecCC
Q 000133 1978 PGTLVVIIKRGNNMKQSV-GNPSVYCKLTLGN----TPPRQTKIVSTGPNPEWEESFAWSF-E-IPPKGQKLHISCKNKS 2050 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~ 2050 (2100)
.|.|+|+|.+..++.... |.+.-|+++.++. ...++|||++++.||+|||+|.|.. . .......|+++|++++
T Consensus 12 ~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d 91 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHD 91 (122)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCC
Confidence 578999999999996544 3466888888874 3467899999999999999999986 2 2345679999999999
Q ss_pred ccCCcc-cceEEEEEeeEEeecccccceee
Q 000133 2051 KMGKSS-FGKVTIQIDRVVMLGAVAGEYTL 2079 (2100)
Q Consensus 2051 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 2079 (2100)
.|+++. +|+|.|.+.++...+...+-|.|
T Consensus 92 ~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 92 SLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 998655 59999999999877777777766
No 66
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.80 E-value=3.7e-05 Score=95.06 Aligned_cols=542 Identities=12% Similarity=0.118 Sum_probs=305.9
Q ss_pred cCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHhc
Q 000133 105 KSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQA 184 (2100)
Q Consensus 105 ~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~ 184 (2100)
.+++..+|.-++.+|..++...- .+ |.. .-..++.+||+-.+.+... ... .-+.++..|+...+.........
T Consensus 563 ~De~qkVR~itAlalsalaeaa~-Py-gie--~fDsVlkpLwkgir~hrgk--~la-afLkAigyliplmd~eya~yyTr 635 (1172)
T KOG0213|consen 563 KDEQQKVRTITALALSALAEAAT-PY-GIE--QFDSVLKPLWKGIRQHRGK--ELA-AFLKAIGYLIPLMDAEYASYYTR 635 (1172)
T ss_pred cccchhhhhHHHHHHHHHHHhcC-Cc-chH--HHHHHHHHHHHHHHHccCh--HHH-HHHHHHhhccccccHHHHHHhHH
Confidence 45666778888888877776321 11 222 2245677888887765433 222 34567777776655544444444
Q ss_pred CCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcC-------CCCHHHHHHHHHHHHH---
Q 000133 185 GGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGS-------GNEASVRAEAAGALKS--- 254 (2100)
Q Consensus 185 g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~-------~~~~~v~~~Aa~aL~~--- 254 (2100)
..+-.+.+=..++|.+.+.-..+++.+.+..++ .-.+......+|.++...-. .+...+...+..+-..
T Consensus 636 evmlil~rEf~sPDeemkkivLKVv~qcc~t~G-v~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~ 714 (1172)
T KOG0213|consen 636 EVMLILIREFGSPDEEMKKIVLKVVKQCCATDG-VEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGS 714 (1172)
T ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHHHhcccC-CCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCc
Confidence 556677777788999999999999988886655 44555556666666554321 1111111122111111
Q ss_pred ----------hhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCC
Q 000133 255 ----------LSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESC 324 (2100)
Q Consensus 255 ----------Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~ 324 (2100)
+-..++..|+.. .+.+..++..+...+ .+..+.+.-...+.+--. ++.
T Consensus 715 ~~~v~R~v~~lkde~e~yrkm~--~etv~ri~~~lg~~d-------iderleE~lidgil~Afq-------------eqt 772 (1172)
T KOG0213|consen 715 DPIVSRVVLDLKDEPEQYRKMV--AETVSRIVGRLGAAD-------IDERLEERLIDGILYAFQ-------------EQT 772 (1172)
T ss_pred hHHHHHHhhhhccccHHHHHHH--HHHHHHHHhcccccc-------ccHHHHHHHHHHHHHHHH-------------hcc
Confidence 111111122111 122334444443322 112222222222221110 000
Q ss_pred CChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccc---hhhhcccc
Q 000133 325 SSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLS---IKLENSEA 401 (2100)
Q Consensus 325 ~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~---~~l~~~g~ 401 (2100)
.....+....|++.. -+.+ ..+.+-| .+.......|++.++. +|+.|+..++.++---..+ +.+..-|
T Consensus 773 t~d~vml~gfg~V~~---~lg~---r~kpylp-qi~stiL~rLnnksa~-vRqqaadlis~la~Vlktc~ee~~m~~lG- 843 (1172)
T KOG0213|consen 773 TEDSVMLLGFGTVVN---ALGG---RVKPYLP-QICSTILWRLNNKSAK-VRQQAADLISSLAKVLKTCGEEKLMGHLG- 843 (1172)
T ss_pred cchhhhhhhHHHHHH---HHhh---ccccchH-HHHHHHHHHhcCCChh-HHHHHHHHHHHHHHHHHhccHHHHHHHhh-
Confidence 000111111222221 1110 0112232 5666677777776664 7999999988873211111 1122211
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhccCcc--chHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCccc---
Q 000133 402 KRLLVGLITMATNEVQEELVRALLKLCNNEGS--LWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDS--- 476 (2100)
Q Consensus 402 i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~--~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~--- 476 (2100)
..|.+-|...++++.-..+.+|..++..-.- ...-+ .+.+|.|..+|++....+++++...++.++...++.
T Consensus 844 -vvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi--~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~a 920 (1172)
T KOG0213|consen 844 -VVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPI--KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSA 920 (1172)
T ss_pred -HHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCCh--hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCH
Confidence 2356677778888887777777666543210 11111 367899999999999999999999999998766653
Q ss_pred HHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcC
Q 000133 477 KWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHK 556 (2100)
Q Consensus 477 ~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~ 556 (2100)
++-.. +--.|+.+|...+.++|..|...++.++.- |.-+.++..|++-|+......+....-++.-.+..
T Consensus 921 REWMR---IcfeLlelLkahkK~iRRaa~nTfG~Iaka-------IGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~ 990 (1172)
T KOG0213|consen 921 REWMR---ICFELLELLKAHKKEIRRAAVNTFGYIAKA-------IGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAET 990 (1172)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHHh-------cCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhh
Confidence 11111 223588889989999999999999998853 22234566666666654444343444444444433
Q ss_pred CC-CCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 000133 557 SD-TATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFET 635 (2100)
Q Consensus 557 ~~-~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~ 635 (2100)
.. -..+|.|+.--+.....++..++++++.+-.....-. ...+ ....|.|.+.|.+.+..-|.-|+.++..++-+
T Consensus 991 c~pFtVLPalmneYrtPe~nVQnGVLkalsf~Feyigems--kdYi--yav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 991 CGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMS--KDYI--YAVTPLLEDALMDRDLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred cCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHh--hhHH--HHhhHHHHHhhccccHHHHHHHHHHHHHHhcC
Confidence 32 2566777665556666788889999887755332111 1111 12367777788899999999999999999987
Q ss_pred ChhhHHHHHhcCchHH---HHHhh----cCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHH
Q 000133 636 RKDLRESSIAVKTLWS---VMKLL----DVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAE 708 (2100)
Q Consensus 636 ~~~~~~~~~~~g~v~~---Lv~lL----~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~ 708 (2100)
... .|.... |++++ -+.++.++.....++..+..... . ...+...++-|.+|...||+
T Consensus 1067 ~~g-------~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg-~-------~~~~~Y~~QGLFHParkVR~ 1131 (1172)
T KOG0213|consen 1067 VPG-------TGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALG-P-------QAMLKYCLQGLFHPARKVRK 1131 (1172)
T ss_pred CCC-------cCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhc-h-------HHHHHHHHHhccCcHHHHHH
Confidence 432 243333 44443 46677788887777777743321 1 22356677888999998987
Q ss_pred HHHHHHHHH
Q 000133 709 QATCALANL 717 (2100)
Q Consensus 709 ~aa~aL~~L 717 (2100)
.-...+.++
T Consensus 1132 ~yw~vyn~m 1140 (1172)
T KOG0213|consen 1132 RYWTVYNSM 1140 (1172)
T ss_pred HHHHHHHhH
Confidence 655444444
No 67
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=98.80 E-value=3.6e-09 Score=109.26 Aligned_cols=101 Identities=19% Similarity=0.352 Sum_probs=82.6
Q ss_pred CCceeeeeccchhhhh-hCCCcceEEEecCCCC----CccccccccCCCccccccceeccccCCCCCeEEEEeecCCccC
Q 000133 1979 GTLVVIIKRGNNMKQS-VGNPSVYCKLTLGNTP----PRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMG 2053 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2053 (2100)
|.|+|+|.+..++... .|.+.-++++.++.++ .++|||+.++.||+|||.|.|.+.....+..+++.+++++.++
T Consensus 12 ~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~~ 91 (119)
T cd08685 12 RKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSKS 91 (119)
T ss_pred CEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCCc
Confidence 6799999999998543 3446788888887543 4579999999999999999998864445568999999999875
Q ss_pred --CcccceEEEEEeeEEeecccccceee
Q 000133 2054 --KSSFGKVTIQIDRVVMLGAVAGEYTL 2079 (2100)
Q Consensus 2054 --~~~~~~~~~~~~~~~~~~~~~~~~~~ 2079 (2100)
++-+|++.|++++++..+.+.+-|.|
T Consensus 92 ~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 92 RDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCCEEEEEEEecHHHhccCccccceEeC
Confidence 45789999999999976668888876
No 68
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=98.80 E-value=6.5e-09 Score=107.70 Aligned_cols=111 Identities=23% Similarity=0.328 Sum_probs=91.3
Q ss_pred Cceeeeeccchhhhh--hCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCc-c
Q 000133 1980 TLVVIIKRGNNMKQS--VGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKS-S 2056 (2100)
Q Consensus 1980 ~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 2056 (2100)
+++|+|++..++... .|.+.-++++.+|+ ..++|+++.++.||.|+|.|.|... ++.++.|.|+|+|++.||++ .
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~-~~~kT~v~~~t~nP~Wne~f~f~~~-~~~~~~l~v~v~d~~~~~~~~~ 78 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGN-EKYKSKVCSKTLNPQWLEQFDLHLF-DDQSQILEIEVWDKDTGKKDEF 78 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECC-EeEecccccCCCCCceeEEEEEEec-CCCCCEEEEEEEECCCCCCCCe
Confidence 589999999999665 45577889999964 5688999999999999999998876 45688999999999999764 5
Q ss_pred cceEEEEEeeEEeecccccceeecCCCCCCCCcceEEEEEe
Q 000133 2057 FGKVTIQIDRVVMLGAVAGEYTLLPESKSGPSRNLEIEFLW 2097 (2100)
Q Consensus 2057 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2097 (2100)
+|++.|+++++...+.+...|.|.+. .|+.+ +++.|
T Consensus 79 iG~~~~~l~~l~~~~~~~~w~~L~~~--~G~~~---~~~~~ 114 (116)
T cd08376 79 IGRCEIDLSALPREQTHSLELELEDG--EGSLL---LLLTL 114 (116)
T ss_pred EEEEEEeHHHCCCCCceEEEEEccCC--CcEEE---EEEEe
Confidence 59999999999888888888888654 36654 55554
No 69
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.80 E-value=4.2e-09 Score=109.42 Aligned_cols=93 Identities=28% Similarity=0.534 Sum_probs=78.3
Q ss_pred CCCceeeeeccchhhh-hh-CCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCc
Q 000133 1978 PGTLVVIIKRGNNMKQ-SV-GNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKS 2055 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2055 (2100)
-|.|-|+|+|+.+++. .+ |.+--|+.+++|+ ...||+||++|.||+|||.|+|.+..| +..|.+.|+||++|..+
T Consensus 5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~-q~lkT~~v~~n~NPeWNe~ltf~v~d~--~~~lkv~VyD~D~fs~d 81 (168)
T KOG1030|consen 5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGN-QKLKTRVVYKNLNPEWNEELTFTVKDP--NTPLKVTVYDKDTFSSD 81 (168)
T ss_pred ceEEEEEEEeecCeeeeccccCCCCeEEEEECC-eeeeeeeecCCCCCcccceEEEEecCC--CceEEEEEEeCCCCCcc
Confidence 4899999999999865 45 6677999999985 467888999999999999999998744 67899999999999665
Q ss_pred c-cceEEEEEeeEEeeccc
Q 000133 2056 S-FGKVTIQIDRVVMLGAV 2073 (2100)
Q Consensus 2056 ~-~~~~~~~~~~~~~~~~~ 2073 (2100)
- +|+++|+|..++..+..
T Consensus 82 D~mG~A~I~l~p~~~~~~~ 100 (168)
T KOG1030|consen 82 DFMGEATIPLKPLLEAQKM 100 (168)
T ss_pred cccceeeeccHHHHHHhhh
Confidence 5 59999999888764443
No 70
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.79 E-value=0.00043 Score=83.87 Aligned_cols=623 Identities=14% Similarity=0.059 Sum_probs=310.9
Q ss_pred CCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhcCC--HHHHHHHHHHHHh-hhccchhh-HHHHhc-CC
Q 000133 22 SSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGS--LAVKIQAATVLGS-LCKENELR-VKVLLG-GC 96 (2100)
Q Consensus 22 ~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~~~--~~v~~~aa~~L~~-L~~~~~~~-~~i~~~-g~ 96 (2100)
+.++.-+..|-.+|.++.+..= ...+..+++.|.+.+ +..|+-+.-+|.+ +..+++.+ ....+. -+
T Consensus 16 spD~n~rl~aE~ql~~l~~~dF---------~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~ 86 (858)
T COG5215 16 SPDPNARLRAEAQLLELQSGDF---------EQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLG 86 (858)
T ss_pred CCCCCccccHHHHHHHhccccH---------HHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhcc
Confidence 4555566667777777665221 123456666666544 3666666666665 33333322 222211 01
Q ss_pred hH---------HHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhcc--CCCcchHHHHHHH
Q 000133 97 IP---------PLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNG--LKSGNVVDNLLTG 165 (2100)
Q Consensus 97 i~---------~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~--~~~~~~v~~~a~~ 165 (2100)
+| ..+.-|++..+.....|+.++..++.- -...|.-|-|++.+... ..+.......+++
T Consensus 87 ~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~----------Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~ 156 (858)
T COG5215 87 MRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARM----------ELPNSLWPGLMEEMVRNVGDEQPVSGKCESLG 156 (858)
T ss_pred CCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh----------hCccccchHHHHHHHHhccccCchHhHHHHHH
Confidence 11 234556777788888888888888872 13567788888877553 2333336677889
Q ss_pred HHHHhccCChhhHHHHHh-cCCHHHHHH-hHcc-CCHHHHHHHHHHHHH-HhhcCcchhhHHhhhchHHHHHHHh---cC
Q 000133 166 ALRNLSTSTEGFWAATVQ-AGGIDILVK-LLTL-GQSSTQAHVCFLLAC-MMEEDVSVCSRVLAADATKQLLKLL---GS 238 (2100)
Q Consensus 166 aL~nL~~~~~~~~~~i~~-~g~v~~Lv~-lL~s-~~~~v~~~a~~~L~~-L~~~~~~~~~~i~~~g~i~~Lv~lL---~~ 238 (2100)
+++++|.+.+.. ..+-. ..++-.++. .++. ++..+|..+..+|.+ +.. .+..+..++-...+++.. ..
T Consensus 157 ~~gy~ces~~Pe-~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~f----v~~nf~~E~erNy~mqvvceatq 231 (858)
T COG5215 157 ICGYHCESEAPE-DLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMF----VQGNFCYEEERNYFMQVVCEATQ 231 (858)
T ss_pred HHHHHhhccCHH-HHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHH----HHHhhcchhhhchhheeeehhcc
Confidence 999999665431 11111 122223333 3333 456788888888876 321 122222233333333322 34
Q ss_pred CCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHH-HHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhC---CCcchh
Q 000133 239 GNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPA-MINATIAPSKEFMQGEYAQALQENAMCALANISG---GLSNVI 314 (2100)
Q Consensus 239 ~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~-Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~---~~~~~i 314 (2100)
++|.+++..|.++|..+-.-.-.--+...+ .++-. ....+.+++ .++.-.++.--.-+|. +....+
T Consensus 232 ~~d~e~q~aafgCl~kim~LyY~fm~~ymE-~aL~alt~~~mks~n---------d~va~qavEfWsticeEeid~~~e~ 301 (858)
T COG5215 232 GNDEELQHAAFGCLNKIMMLYYKFMQSYME-NALAALTGRFMKSQN---------DEVAIQAVEFWSTICEEEIDGEMED 301 (858)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCcc---------hHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 577899999999998876422111111111 12222 222333332 1222222221111221 000000
Q ss_pred hhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccch
Q 000133 315 SSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSI 394 (2100)
Q Consensus 315 ~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~ 394 (2100)
.++ |+ .|. .+.| .| +.
T Consensus 302 ~~~------pe--~p~-qn~~------------------------------------------fa-------------~a 317 (858)
T COG5215 302 KYL------PE--VPA-QNHG------------------------------------------FA-------------RA 317 (858)
T ss_pred hhc------cc--Cch-hhcc------------------------------------------hH-------------HH
Confidence 000 00 000 0000 00 00
Q ss_pred hhhccccHHHHHHhhcC-------CCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHH
Q 000133 395 KLENSEAKRLLVGLITM-------ATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLC 467 (2100)
Q Consensus 395 ~l~~~g~i~~Lv~lL~~-------~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~ 467 (2100)
. -.+.+|.|+.+|.. ++..+-..|..||.-.+....+ .|.+ ..+..+-.-+++++..-++.|+.+++
T Consensus 318 a--v~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd---~i~~-pVl~FvEqni~~~~w~nreaavmAfG 391 (858)
T COG5215 318 A--VADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD---KIMR-PVLGFVEQNIRSESWANREAAVMAFG 391 (858)
T ss_pred H--HHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh---HhHH-HHHHHHHHhccCchhhhHHHHHHHhh
Confidence 0 11345566666642 2345667777777665554322 1221 23344444567889999999999999
Q ss_pred HhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhc---CChhHHH
Q 000133 468 LLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKN---GSANGKE 544 (2100)
Q Consensus 468 nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~---~~~~~~~ 544 (2100)
.+-.+..+....-+-..++|.+...+.++.-.+++.++|+++.++.+.+. .+-..|-++..++.+-- ..|....
T Consensus 392 Svm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~---~i~p~~Hl~~~vsa~liGl~D~p~~~~ 468 (858)
T COG5215 392 SVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAM---IISPCGHLVLEVSASLIGLMDCPFRSI 468 (858)
T ss_pred hhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHH---hcCccccccHHHHHHHhhhhccchHHh
Confidence 99865455555555667999999999999999999999999999875332 23335555544443332 3567778
Q ss_pred HHHHHHHHHhcCCCC----------CcHHHHHHHh------hcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHH
Q 000133 545 IAAKTLNHLIHKSDT----------ATISQLTALL------TSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVE 608 (2100)
Q Consensus 545 ~Aa~aL~~L~~~~~~----------~~i~~L~~lL------~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~ 608 (2100)
.++|..-||..|-.+ ...+.++..| ...+...|....++||.+-...+..- .+
T Consensus 469 ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V-----------~~ 537 (858)
T COG5215 469 NCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAV-----------SD 537 (858)
T ss_pred hhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhH-----------HH
Confidence 888988888765321 0011111110 01111223333333333222211100 00
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHh
Q 000133 609 TMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVA 688 (2100)
Q Consensus 609 ~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~ 688 (2100)
.+..+..-...++ ..+...+.++-. +-.-+. -++.+-.-+..|..+.+..+. .+.-++
T Consensus 538 ~~a~~~~~~~~kl-~~~isv~~q~l~-----------------~eD~~~--~~elqSN~~~vl~aiir~~~~--~ie~v~ 595 (858)
T COG5215 538 ILAGFYDYTSKKL-DECISVLGQILA-----------------TEDQLL--VEELQSNYIGVLEAIIRTRRR--DIEDVE 595 (858)
T ss_pred HHHHHHHHHHHHH-HHHHHHhhhhhh-----------------hHHHHH--HHHHHHHHHHHHHHHHHhcCC--CcccHH
Confidence 1111000000000 001111111111 000000 123444445555554332211 000112
Q ss_pred CCChHHHHHHhCCCCHHHH-HHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCccchh
Q 000133 689 RDALSPLVVLAGSPVLEVA-EQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYT 767 (2100)
Q Consensus 689 ~~~l~~Lv~ll~~~~~evr-~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~~~~~ 767 (2100)
...+..++++|.+.++.+. .....++.+|+.+-+..-+...+..+|.|.+-++..+..+-.-|..-...+.+...++..
T Consensus 596 D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~ 675 (858)
T COG5215 596 DQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFN 675 (858)
T ss_pred HHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHH
Confidence 2246667788877655544 556677777776544444445688999999999666665666666666666665555422
Q ss_pred HhhhhhccCcHHHHHHhhhhc
Q 000133 768 ITDCVNRAGTVLALVSFLESA 788 (2100)
Q Consensus 768 ~~~~~~~~g~l~~li~~l~s~ 788 (2100)
. .+...+..|++.+++.
T Consensus 676 ~----y~d~~ms~LvQ~lss~ 692 (858)
T COG5215 676 I----YADVLMSSLVQCLSSE 692 (858)
T ss_pred H----HHHHHHHHHHHHhcCh
Confidence 2 2244455666666665
No 71
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=98.78 E-value=1.3e-08 Score=107.00 Aligned_cols=101 Identities=15% Similarity=0.285 Sum_probs=83.6
Q ss_pred ceeeeeccchhhh--hhCCCcceEEEecCCCCCccccccccCCCccccccceeccccC----CCCCeEEEEeecCCccCC
Q 000133 1981 LVVIIKRGNNMKQ--SVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIP----PKGQKLHISCKNKSKMGK 2054 (2100)
Q Consensus 1981 ~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 2054 (2100)
+.|+|.+..++.. ..|...-|+.+.+|+ ..++|||++++.||+|||.|.|.+... +.++.|.+.|++++.||+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~-~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~ 79 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGK-EKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGL 79 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECC-eeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCC
Confidence 4689999999964 345577899999974 567899999999999999999988653 567899999999999985
Q ss_pred -cccceEEEEEeeEE--eecccccceeecCC
Q 000133 2055 -SSFGKVTIQIDRVV--MLGAVAGEYTLLPE 2082 (2100)
Q Consensus 2055 -~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 2082 (2100)
+.+|++.|+++.+. ..+....-|.|.+.
T Consensus 80 d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~ 110 (126)
T cd08682 80 DKFLGQVSIPLNDLDEDKGRRRTRWFKLESK 110 (126)
T ss_pred CceeEEEEEEHHHhhccCCCcccEEEECcCC
Confidence 55699999999997 45567788999653
No 72
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=98.78 E-value=1.2e-08 Score=108.27 Aligned_cols=103 Identities=21% Similarity=0.356 Sum_probs=89.4
Q ss_pred ceeeeeccchhhhh-hCCCcceEEEecCC---CCCccccccccCCCccccccceeccccCC--------------CCCeE
Q 000133 1981 LVVIIKRGNNMKQS-VGNPSVYCKLTLGN---TPPRQTKIVSTGPNPEWEESFAWSFEIPP--------------KGQKL 2042 (2100)
Q Consensus 1981 ~~~~~~r~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~ 2042 (2100)
|+|+|++..++... .|...-|.++.+++ +..++|+++.++.+|.|+|.|.|.+..+. ..+.+
T Consensus 1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l 80 (137)
T cd08675 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSEL 80 (137)
T ss_pred CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEE
Confidence 68999999999877 45567888888885 67789999999999999999999988553 56699
Q ss_pred EEEeecCCccCCcc-cceEEEEEeeEEeecccccceeecCCC
Q 000133 2043 HISCKNKSKMGKSS-FGKVTIQIDRVVMLGAVAGEYTLLPES 2083 (2100)
Q Consensus 2043 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2083 (2100)
.|+|++++.||+.. +|++.|+++++...|....-|.|.+.+
T Consensus 81 ~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 81 RVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 99999999997666 699999999999889999999998874
No 73
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=98.77 E-value=8.6e-09 Score=109.12 Aligned_cols=89 Identities=25% Similarity=0.547 Sum_probs=77.6
Q ss_pred CCceeeeeccchhhhh--hCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCC-c
Q 000133 1979 GTLVVIIKRGNNMKQS--VGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGK-S 2055 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 2055 (2100)
|.|+|+|.+..++... .|...-|+.+.+|+ ....|+|++++.||+|||.|.|... +|..+.+.|+|+|++.||+ +
T Consensus 15 G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~-~~~kT~vi~~t~nP~Wne~f~f~v~-~~~~~~l~i~V~D~d~~~~d~ 92 (136)
T cd08375 15 GRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGS-QEHKTKVVSDTLNPKWNSSMQFFVK-DLEQDVLCITVFDRDFFSPDD 92 (136)
T ss_pred EEEEEEEEEeeCCCCCCCCCCcCcEEEEEECC-EeeeccccCCCCCCccCceEEEEec-CccCCEEEEEEEECCCCCCCC
Confidence 8899999999999653 55577899999975 4678999999999999999999886 5677899999999999986 5
Q ss_pred ccceEEEEEeeEEe
Q 000133 2056 SFGKVTIQIDRVVM 2069 (2100)
Q Consensus 2056 ~~~~~~~~~~~~~~ 2069 (2100)
.+|+++|+|..++.
T Consensus 93 ~lG~~~i~l~~l~~ 106 (136)
T cd08375 93 FLGRTEIRVADILK 106 (136)
T ss_pred eeEEEEEEHHHhcc
Confidence 66999999999987
No 74
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=98.75 E-value=1.9e-08 Score=104.95 Aligned_cols=114 Identities=18% Similarity=0.260 Sum_probs=90.4
Q ss_pred ceeeeeccchhh--hhhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCC-ccc
Q 000133 1981 LVVIIKRGNNMK--QSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGK-SSF 2057 (2100)
Q Consensus 1981 ~~~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 2057 (2100)
|+|+|.+..++. ...|...-|+.+..++....+|+++.++.||+|+|.|.|.+.. ..+.+.++|+|++.+|+ +.+
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~--~~~~l~~~v~D~d~~~~~~~i 79 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIED--VTQPLYIKVFDYDRGLTDDFM 79 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecC--CCCeEEEEEEeCCCCCCCcce
Confidence 689999999985 3456677889999976677899999999999999999998763 36899999999999955 556
Q ss_pred ceEEEEEeeEEeecccccceeecCCCCCCCCcceEEEEE
Q 000133 2058 GKVTIQIDRVVMLGAVAGEYTLLPESKSGPSRNLEIEFL 2096 (2100)
Q Consensus 2058 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2096 (2100)
|++.|++..+...+.....|.|.+.+++...=+|.+.+.
T Consensus 80 G~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~ 118 (121)
T cd04042 80 GSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVT 118 (121)
T ss_pred EEEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEE
Confidence 999999999998888888999965543222223445443
No 75
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=98.74 E-value=2.5e-08 Score=103.50 Aligned_cols=106 Identities=19% Similarity=0.265 Sum_probs=88.6
Q ss_pred Cceeeeeccchhhhh-h--CCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCcc
Q 000133 1980 TLVVIIKRGNNMKQS-V--GNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKSS 2056 (2100)
Q Consensus 1980 ~~~~~~~r~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2056 (2100)
.|+|+|+...++... . |.+.-+|.+.+++....+|+|+.++.||.|+|.|.|.+. +....|++.|++++.|+++.
T Consensus 1 ~l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~--~~~~~l~~~v~d~~~~~~~~ 78 (121)
T cd08401 1 SLKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIP--RTFRHLSFYIYDRDVLRRDS 78 (121)
T ss_pred CeEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcC--CCCCEEEEEEEECCCCCCCc
Confidence 478999999999875 2 456789999998766788999999999999999998764 33579999999999997755
Q ss_pred -cceEEEEEeeEEeecccccceeecCCCCCCC
Q 000133 2057 -FGKVTIQIDRVVMLGAVAGEYTLLPESKSGP 2087 (2100)
Q Consensus 2057 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2087 (2100)
+|+|.|+++.+-..+.+...|.|.+..++++
T Consensus 79 ~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~ 110 (121)
T cd08401 79 VIGKVAIKKEDLHKYYGKDTWFPLQPVDADSE 110 (121)
T ss_pred eEEEEEEEHHHccCCCCcEeeEEEEccCCCCc
Confidence 6999999999988889999999988644433
No 76
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=4.3e-06 Score=105.06 Aligned_cols=254 Identities=15% Similarity=0.100 Sum_probs=195.1
Q ss_pred HHHHHhhcCC-CHHHHHHHHHHHHH-hhccCccchHHHHhCCcHHHHHHhhCC-CCHHHHHHHHHHHHHhccCCcccHHH
Q 000133 403 RLLVGLITMA-TNEVQEELVRALLK-LCNNEGSLWRALQGREGIQLLISLLGL-SSEQQQECSVALLCLLSNENDDSKWA 479 (2100)
Q Consensus 403 ~~Lv~lL~~~-~~~v~~~A~~aL~~-L~~~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~v~~~A~~aL~nLs~~~~~~~~~ 479 (2100)
+.|++-++.. ++..|..++.-|.. |+..+++.-.-+--.-.+|.|+.+|++ .+.+++..|+++|.+|+..-|.....
T Consensus 170 kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~ 249 (1051)
T KOG0168|consen 170 KKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAI 249 (1051)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhe
Confidence 3455555544 77777666655553 555554432222222457999999986 48999999999999999888999999
Q ss_pred HHhcCChHHHHHhcc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC
Q 000133 480 ITAAGGIPPLVQILE-SGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD 558 (2100)
Q Consensus 480 i~~~g~i~~Lv~lL~-~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~ 558 (2100)
++++++||.|+.-|. -..-++-|++..+|..|+.. .-..+.++|++...+..|.--+-.+++.|..+..|+|..-.
T Consensus 250 vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~---H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 250 VVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR---HPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred eecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh---ccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999997554 45788999999999999873 34567799999999999998888999999999999997432
Q ss_pred C-------CcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCC----CHHHHHHHHH
Q 000133 559 T-------ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSST----KEETQAKSAS 627 (2100)
Q Consensus 559 ~-------~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~----~~~~~~~Aa~ 627 (2100)
+ +++|-|..+|...+...-+.+.-|+..+.+-..+..-.-..+...+-|....+++.-. +..+..--..
T Consensus 327 sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIr 406 (1051)
T KOG0168|consen 327 SDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIR 406 (1051)
T ss_pred CccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHH
Confidence 2 6789999999988888889999999988886654332333456677788888877543 4456667788
Q ss_pred HHHHHhcCChhhHHHHHhcCchHHHHHhhcCC
Q 000133 628 ALAGIFETRKDLRESSIAVKTLWSVMKLLDVG 659 (2100)
Q Consensus 628 aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~ 659 (2100)
.|..++.+.+.....+...++...|..+|...
T Consensus 407 mls~msS~~pl~~~tl~k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 407 MLSLMSSGSPLLFRTLLKLDIADTLKRILQGY 438 (1051)
T ss_pred HHHHHccCChHHHHHHHHhhHHHHHHHHHhcc
Confidence 88889998888888888889999999888543
No 77
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.71 E-value=7.7e-07 Score=110.75 Aligned_cols=245 Identities=16% Similarity=0.027 Sum_probs=185.7
Q ss_pred cCChHHHHHhhc-cCChhhHHHHHHHHHHhhcCCchhhHHHHhhhcchhHHHHHHHhhcCChhhHHHHHHHHHHHhcCcc
Q 000133 1271 RQAVQPLVEILN-TGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTR 1349 (2100)
Q Consensus 1271 ~~~i~~Lv~lL~-~~~~~~~~~A~~aL~~La~~~~~~~~~~~~v~~gal~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~ 1349 (2100)
+.+++.|+..|. +.+.+.+..++.+|.... ...+++.|++.|.+. ++.++..+.+.|+++
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~-------------~~~~~~~L~~~L~d~-~~~vr~aaa~ALg~i----- 113 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQE-------------DALDLRSVLAVLQAG-PEGLCAGIQAALGWL----- 113 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhccC-------------ChHHHHHHHHHhcCC-CHHHHHHHHHHHhcC-----
Confidence 567999999995 455555555555554222 122489999999875 677999999999865
Q ss_pred hHHHHHhhcChHHHHHHHhcCCchHHHHHHHHHHHhcccHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcC
Q 000133 1350 IRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKD 1429 (2100)
Q Consensus 1350 ~r~~~~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~ 1429 (2100)
....+.+.|+.+|.+.++.+|..++.++... ..+..+.|..+|++.++.||..|+.+|+.+...
T Consensus 114 -----~~~~a~~~L~~~L~~~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~ 177 (410)
T TIGR02270 114 -----GGRQAEPWLEPLLAASEPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDALVRAAALRALGELPRR 177 (410)
T ss_pred -----CchHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhccc
Confidence 4556778899999999999999999887763 234567899999999999999999999999877
Q ss_pred CchhhHHHHhcCcHHHHHHHhccCChhHHHHHHHHHHHHHhccCCcccccccCchHHHHHHhccCCCCchhHhHHHHHHH
Q 000133 1430 RPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLV 1509 (2100)
Q Consensus 1430 ~~~~k~~i~~~~~i~~lv~~L~~~~~~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~~~~~~~~~A~~~L~ 1509 (2100)
. .++.|...+.+.+++++..++..+..+.. . ....+++.....++ ......+..++.
T Consensus 178 ~-----------a~~~L~~al~d~~~~VR~aA~~al~~lG~---~-------~A~~~l~~~~~~~g--~~~~~~l~~~la 234 (410)
T TIGR02270 178 L-----------SESTLRLYLRDSDPEVRFAALEAGLLAGS---R-------LAWGVCRRFQVLEG--GPHRQRLLVLLA 234 (410)
T ss_pred c-----------chHHHHHHHcCCCHHHHHHHHHHHHHcCC---H-------hHHHHHHHHHhccC--ccHHHHHHHHHH
Confidence 5 78889999999999999998877644322 1 13566666555433 554444444444
Q ss_pred HhhcCCCcccccccccCCChHhhhhccCCCCHHHHHHHHHHHHHhhccccccccccccCchHHHHHHhccCCHHHHHHHH
Q 000133 1510 NILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAV 1589 (2100)
Q Consensus 1510 nL~~~~~~~~~~~~~~~~~l~~Lv~~L~~~~~~vq~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~lL~s~~~~vr~~Al 1589 (2100)
.. .....++.|+.++.++. +|..++.+|+.+... .++++|+..+++.. +++.|.
T Consensus 235 l~------------~~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p----------~av~~L~~~l~d~~--~aR~A~ 288 (410)
T TIGR02270 235 VA------------GGPDAQAWLRELLQAAA--TRREALRAVGLVGDV----------EAAPWCLEAMREPP--WARLAG 288 (410)
T ss_pred hC------------CchhHHHHHHHHhcChh--hHHHHHHHHHHcCCc----------chHHHHHHHhcCcH--HHHHHH
Confidence 32 34467889999998755 999999999999773 78899999997543 999999
Q ss_pred HHHHHhhcCC
Q 000133 1590 KALVSIALTW 1599 (2100)
Q Consensus 1590 ~AL~~Ls~~~ 1599 (2100)
.++.++.-.+
T Consensus 289 eA~~~ItG~~ 298 (410)
T TIGR02270 289 EAFSLITGMD 298 (410)
T ss_pred HHHHHhhCCC
Confidence 9999999654
No 78
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.71 E-value=0.0001 Score=91.26 Aligned_cols=471 Identities=13% Similarity=0.105 Sum_probs=270.6
Q ss_pred HHHHHHHHHHHHhC--CCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhC
Q 000133 375 VQERTIEALASLYG--NPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLG 452 (2100)
Q Consensus 375 vq~~aa~aL~~L~~--~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~ 452 (2100)
||.-++.+|+.|+. .|--...+.. .+.+|..-++.........-+.+++.|+...............+-.+++=..
T Consensus 569 VR~itAlalsalaeaa~Pygie~fDs--VlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~ 646 (1172)
T KOG0213|consen 569 VRTITALALSALAEAATPYGIEQFDS--VLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFG 646 (1172)
T ss_pred hhhHHHHHHHHHHHhcCCcchHHHHH--HHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhC
Confidence 67788888888843 3433333222 2445555444444445555566777777554332223333345666777778
Q ss_pred CCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCC-------C-HHHHHHHHHHHHHHhcCChhhHHHHHh
Q 000133 453 LSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG-------S-AKAKEDSASILRNLCNHSEDIRACVES 524 (2100)
Q Consensus 453 s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~-------~-~~vre~A~~aL~~L~~~~~~~~~~i~~ 524 (2100)
+++++++.....++..+|. .+...........+|.+...+-.. + .++.+.+...-..+ ..
T Consensus 647 sPDeemkkivLKVv~qcc~-t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~Kv-----------G~ 714 (1172)
T KOG0213|consen 647 SPDEEMKKIVLKVVKQCCA-TDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKV-----------GS 714 (1172)
T ss_pred CChHHHHHHHHHHHHHHhc-ccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHh-----------Cc
Confidence 9999999998999998884 565566666677888877765322 1 11222222111111 11
Q ss_pred CCcHHHHHHHhhcCChhHHHHHHHHHHHHhc----CC-CC----CcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchh
Q 000133 525 ADAVPALLWLLKNGSANGKEIAAKTLNHLIH----KS-DT----ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSD 595 (2100)
Q Consensus 525 ~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~----~~-~~----~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~ 595 (2100)
...+..++.=+++..+.-++..+.+..++.. .+ +. .-+..++-.+..++.+.. --...++.+.....
T Consensus 715 ~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg--- 790 (1172)
T KOG0213|consen 715 DPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALG--- 790 (1172)
T ss_pred hHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHh---
Confidence 2234455555666666655555555544432 11 11 122222333333333221 11122222221100
Q ss_pred HHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHH--HHhcCchHHHHHhhcCCCHHHHHHHHHHHHH
Q 000133 596 ILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRES--SIAVKTLWSVMKLLDVGSECILVEASRCLAA 673 (2100)
Q Consensus 596 ~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~--~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~ 673 (2100)
.+-.-.-...+..+++.|++.++.+|..|+..++.|+..-+...+. +...|+ .|...|....+++.-..++|+.+
T Consensus 791 -~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAika 867 (1172)
T KOG0213|consen 791 -GRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKA 867 (1172)
T ss_pred -hccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHH
Confidence 0000011223667778899999999999999999988642211111 222233 47788899999999888888888
Q ss_pred HhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHH-HHcCcHHHHHHHHccCChhHHHHHH
Q 000133 674 IFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKA-IAEEIILPATRVLCEGTISGKTLAA 752 (2100)
Q Consensus 674 L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~-v~~~~v~~L~~ll~~~~~~~~~~Aa 752 (2100)
++.... ..++...-.+.+|.|..+|++.+..+++++...++.++.+.+..... --=.+.--|+++|+++..++|+.|.
T Consensus 868 I~nvig-m~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~ 946 (1172)
T KOG0213|consen 868 IVNVIG-MTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAV 946 (1172)
T ss_pred HHHhcc-ccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 865331 22222334688999999999999999999999999998553321111 1125667788999999999999999
Q ss_pred HHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcc--cccchHhHHHHHHHHHHcCCCCCCCCcccceeeccCC-Cch
Q 000133 753 AAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESAS--GSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPK-SIT 829 (2100)
Q Consensus 753 ~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~--~~v~~~~al~~L~~L~~~~~~~~~~~~~~~~~~~~~~-~l~ 829 (2100)
..+.-+.+..+.. .++..|+..|+... ..+....|+.+.+.. +.|+ +++
T Consensus 947 nTfG~IakaIGPq----------dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~------------------c~pFtVLP 998 (1172)
T KOG0213|consen 947 NTFGYIAKAIGPQ----------DVLATLLNNLKVQERQNRVCTTVAIAIVAET------------------CGPFTVLP 998 (1172)
T ss_pred hhhhHHHHhcCHH----------HHHHHHHhcchHHHHHhchhhhhhhhhhhhh------------------cCchhhhH
Confidence 9999888765553 23445777777654 555555555555543 1122 233
Q ss_pred hhhhhhccCChhHHHHHHHHHHHHhcCCcccchhcccccccchHHHHHHHhhcCCcceecchhhHHHHHh
Q 000133 830 PIVSSIADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGAALLICAA 899 (2100)
Q Consensus 830 ~L~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~g~~~~~~~~~~~~~~~~~l~s~~~~~r~~~~~~~~~~~ 899 (2100)
+|..--...+..+|....+.|+-+|.. .|.+=.+-=-....+++..+-+.|+..|..|+..+--++
T Consensus 999 almneYrtPe~nVQnGVLkalsf~Fey----igemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~ 1064 (1172)
T KOG0213|consen 999 ALMNEYRTPEANVQNGVLKALSFMFEY----IGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLA 1064 (1172)
T ss_pred HHHhhccCchhHHHHhHHHHHHHHHHH----HHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHh
Confidence 333333345678888888888777431 111000000012235566677778888877766644333
No 79
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.70 E-value=8.9e-06 Score=100.51 Aligned_cols=347 Identities=15% Similarity=0.108 Sum_probs=224.0
Q ss_pred CCchHHHHHHHhc-CCHHHHHHHHHHHHhhhccchhhHHH-Hh-----cCChHHHHHhhcCCCHHHHHHHHHHHHHHhcc
Q 000133 53 SQAVPVLVSLLRS-GSLAVKIQAATVLGSLCKENELRVKV-LL-----GGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQG 125 (2100)
Q Consensus 53 ~g~v~~L~~lL~~-~~~~v~~~aa~~L~~L~~~~~~~~~i-~~-----~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~ 125 (2100)
..++..++.+|+. ..+++.......+..|..+++.+... .. .+...+++.+|.+++.-....|+..|..+...
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhc
Confidence 3577889999976 45578888888999998877766543 32 25678888999988888888888888888763
Q ss_pred CCCCcccccchhccCChHHHH----HHhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccC--CH
Q 000133 126 GAKDYVGSKIFSTEGVVPVLW----EQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLG--QS 199 (2100)
Q Consensus 126 ~~~~~~~~~~~~~~g~vp~L~----~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~--~~ 199 (2100)
+... ......+.+. .+++.. .+...+..+..+|.+|... +.+|..+.+.++++.|+++|+.. +.
T Consensus 132 ~~~~-------~~~~~l~~~~~~l~~~l~~~--~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~~~~~~ 201 (429)
T cd00256 132 GLAK-------MEGSDLDYYFNWLKEQLNNI--TNNDYVQTAARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSNATLGF 201 (429)
T ss_pred Cccc-------cchhHHHHHHHHHHHHhhcc--CCcchHHHHHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhhccccH
Confidence 2211 1122343343 444432 1233455667888888744 47888788899999999999863 45
Q ss_pred HHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCh------HhHHHHHhCCChH
Q 000133 200 STQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCK------DARREIAGSNGIP 273 (2100)
Q Consensus 200 ~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~------~~~~~i~~~g~i~ 273 (2100)
..+.+++.+++.|+...+ ....+...+.++.|+++++....+++.+.+..+|.||...+. .....+++.|.+
T Consensus 202 Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~- 279 (429)
T cd00256 202 QLQYQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVL- 279 (429)
T ss_pred HHHHHHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChH-
Confidence 788999999988876655 555666789999999999998778899999999999997421 233455665554
Q ss_pred HHHHhhcCCCcchhhhhhhHHHHHHH-------HHHHHHhhCCCcchhhhccccc-cCCCChhhhhhhhhhhHHHHHHhc
Q 000133 274 AMINATIAPSKEFMQGEYAQALQENA-------MCALANISGGLSNVISSLGQSL-ESCSSPAQVADTLGALASALMIYD 345 (2100)
Q Consensus 274 ~Lv~ll~~~~~e~~~~~~~~~l~~~a-------~~aL~nl~~~~~~~i~~l~~~~-~~~~~~~~~~~~~gal~~ll~~l~ 345 (2100)
+++..|.... -.++++.+.- -.....++.=+.|..+-....+ =+|-.... .+|+
T Consensus 280 ~~l~~L~~rk------~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se------------~FW~ 341 (429)
T cd00256 280 KTLQSLEQRK------YDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSE------------KFWR 341 (429)
T ss_pred HHHHHHhcCC------CCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCc------------hHHH
Confidence 4555554321 1122332211 1111112221111111111111 11211000 0111
Q ss_pred cccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHH-hCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHH
Q 000133 346 SKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASL-YGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRAL 424 (2100)
Q Consensus 346 ~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L-~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL 424 (2100)
.+...- .-+.-.+...|+++|+..++..+..-|+.-++.+ -..|..+..+.+.|+...+++++.++|++|+.+|..|+
T Consensus 342 EN~~kf-~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~av 420 (429)
T cd00256 342 ENADRL-NEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAV 420 (429)
T ss_pred HHHHHH-HhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence 000000 0133467888999997555555556667777777 46688899999999999999999999999999999999
Q ss_pred HHhhcc
Q 000133 425 LKLCNN 430 (2100)
Q Consensus 425 ~~L~~~ 430 (2100)
..|..+
T Consensus 421 Qklm~~ 426 (429)
T cd00256 421 QKLMVH 426 (429)
T ss_pred HHHHHh
Confidence 887654
No 80
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.70 E-value=2.8e-06 Score=104.85 Aligned_cols=336 Identities=13% Similarity=0.059 Sum_probs=217.4
Q ss_pred hhhHHHHHhhcCCCCChHHHHHHHHHHHHH-hCCCccchhhhc-----cccHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 000133 357 LIVEQTLVNQFKPRLPFLVQERTIEALASL-YGNPLLSIKLEN-----SEAKRLLVGLITMATNEVQEELVRALLKLCNN 430 (2100)
Q Consensus 357 ~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L-~~~~~~~~~l~~-----~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~ 430 (2100)
.....+++.++...+...+.+.+..-+..+ ..+|.....+.+ .+...+++.++..++.-++..++..|..+...
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhc
Confidence 356667777777666655666666666666 344443333332 34566777889888999999999999998765
Q ss_pred CccchHHHHhCCcHHHHHHhhCCC-CHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCC--CHHHHHHHHHH
Q 000133 431 EGSLWRALQGREGIQLLISLLGLS-SEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG--SAKAKEDSASI 507 (2100)
Q Consensus 431 ~~~~~~~i~~~g~i~~Lv~lL~s~-~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~vre~A~~a 507 (2100)
+..........-...-|...+++. +...+..++.+|..|.. .++.|..+.+.+|++.|+.+|+.. +.+.+.+++.+
T Consensus 132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~ 210 (429)
T cd00256 132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC 210 (429)
T ss_pred CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence 443211100001223445555543 46777788899999985 788999999999999999999764 56889999999
Q ss_pred HHHHhcCChhhHHHHHhCCcHHHHHHHhhcC-ChhHHHHHHHHHHHHhcCCCCC-------------cHHHHHHHhhcCC
Q 000133 508 LRNLCNHSEDIRACVESADAVPALLWLLKNG-SANGKEIAAKTLNHLIHKSDTA-------------TISQLTALLTSDL 573 (2100)
Q Consensus 508 L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~Aa~aL~~L~~~~~~~-------------~i~~L~~lL~~~~ 573 (2100)
+|-|+-. ++........+.++.|+++++.. ..++.+-+..+|.||...+... .+++++..|....
T Consensus 211 lWlLSF~-~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk 289 (429)
T cd00256 211 IWLLTFN-PHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRK 289 (429)
T ss_pred HHHHhcc-HHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCC
Confidence 9999985 55555666789999999999974 5678899999999998744211 2222222222211
Q ss_pred cchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCC----CHHHHHHHHHHHHHHhcCChh--------hHH
Q 000133 574 PESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSST----KEETQAKSASALAGIFETRKD--------LRE 641 (2100)
Q Consensus 574 ~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~----~~~~~~~Aa~aL~~L~~~~~~--------~~~ 641 (2100)
. +.+|+... +..|-+.|... +.-=++.+----++|.+++.+ +..
T Consensus 290 ~-----------------~DedL~ed-------l~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~ 345 (429)
T cd00256 290 Y-----------------DDEDLTDD-------LKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENAD 345 (429)
T ss_pred C-----------------CcHHHHHH-------HHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHH
Confidence 1 11111111 22222222111 000001111111233443322 222
Q ss_pred HHHhcC--chHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 000133 642 SSIAVK--TLWSVMKLL-DVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLI 718 (2100)
Q Consensus 642 ~~~~~g--~v~~Lv~lL-~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~ 718 (2100)
.+-+.+ ++..|+++| .+.++.+..-||.=|+.++.+.|... ..+-+-|+=..++++|.+++++||.+|..|+..|+
T Consensus 346 kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr-~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 346 RLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGK-DVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred HHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHH-HHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 233322 688999999 46677788889999999999876443 43667888888999999999999999999998876
Q ss_pred c
Q 000133 719 L 719 (2100)
Q Consensus 719 ~ 719 (2100)
.
T Consensus 425 ~ 425 (429)
T cd00256 425 V 425 (429)
T ss_pred H
Confidence 3
No 81
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=98.70 E-value=2e-08 Score=105.34 Aligned_cols=103 Identities=26% Similarity=0.531 Sum_probs=86.9
Q ss_pred CCceeeeeccchhhhh--hCCCcceEEEecCCCCCcccccccc-CCCccccccceeccccCC--CCCeEEEEeecCCccC
Q 000133 1979 GTLVVIIKRGNNMKQS--VGNPSVYCKLTLGNTPPRQTKIVST-GPNPEWEESFAWSFEIPP--KGQKLHISCKNKSKMG 2053 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 2053 (2100)
|.|.|+|++..+++.. .|...-++++..++ ..+.|+++.+ +.+|.|+|.|.|.+..++ ..+.|.|+|+++..|+
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~-~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~ 79 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRT-QERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFS 79 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECC-EeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCC
Confidence 7899999999999753 44566888888864 4678888875 899999999999998553 3579999999999997
Q ss_pred Ccc-cceEEEEEeeEEeecccccceeecCC
Q 000133 2054 KSS-FGKVTIQIDRVVMLGAVAGEYTLLPE 2082 (2100)
Q Consensus 2054 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 2082 (2100)
++. +|++.|+++++...|...+.|.|.|.
T Consensus 80 ~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~ 109 (124)
T cd04049 80 DDDFIGEATIHLKGLFEEGVEPGTAELVPA 109 (124)
T ss_pred CCCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence 655 59999999999999999999999875
No 82
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=98.69 E-value=1.9e-08 Score=104.99 Aligned_cols=102 Identities=22% Similarity=0.296 Sum_probs=83.0
Q ss_pred CCCceeeeeccchhhhh---hCCCcceEEEecCC----CCCccccccccCCCccccccceeccccCCC-CCeEEEEeecC
Q 000133 1978 PGTLVVIIKRGNNMKQS---VGNPSVYCKLTLGN----TPPRQTKIVSTGPNPEWEESFAWSFEIPPK-GQKLHISCKNK 2049 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 2049 (2100)
-|.|+|+|.+..++... .|...-|.++.+.. ...|+|+|++++.||+|||.|.|.+..+.. +..|.+.|+++
T Consensus 14 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~ 93 (125)
T cd04029 14 TQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHY 93 (125)
T ss_pred CCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEEC
Confidence 47899999999999754 35566777766642 346789999999999999999998764443 45899999999
Q ss_pred CccCCcc-cceEEEEEeeEEeecccccceee
Q 000133 2050 SKMGKSS-FGKVTIQIDRVVMLGAVAGEYTL 2079 (2100)
Q Consensus 2050 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 2079 (2100)
+.||++. +|.+.|.++.+-..+.+.+-|.|
T Consensus 94 ~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 94 DRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred CCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 9998874 69999999999888888877766
No 83
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=98.69 E-value=1.7e-08 Score=106.52 Aligned_cols=101 Identities=23% Similarity=0.405 Sum_probs=83.5
Q ss_pred CCceeeeeccchhhhhh--CCCcceEEEecCC----CCCccccccccCCCccccccceeccccCC-CCCeEEEEeecCCc
Q 000133 1979 GTLVVIIKRGNNMKQSV--GNPSVYCKLTLGN----TPPRQTKIVSTGPNPEWEESFAWSFEIPP-KGQKLHISCKNKSK 2051 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 2051 (2100)
|.|+|+|.+..++...- |.+..|+++.++. ...++|+|++++.||+|||.|.|.+..+. .+..|+|.|++++.
T Consensus 16 ~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~ 95 (127)
T cd04030 16 QKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKS 95 (127)
T ss_pred CEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCc
Confidence 77999999999997543 5577888888864 45778999999999999999999986432 35699999999998
Q ss_pred c--C-CcccceEEEEEeeEEeecccccceee
Q 000133 2052 M--G-KSSFGKVTIQIDRVVMLGAVAGEYTL 2079 (2100)
Q Consensus 2052 ~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 2079 (2100)
| | .+.+|++.|+++++...+...+-|.|
T Consensus 96 ~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 96 FLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred ccCCCCceEEEEEEecccccccCCccceEEC
Confidence 7 4 45679999999999877788888876
No 84
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=98.68 E-value=1.7e-08 Score=103.37 Aligned_cols=102 Identities=19% Similarity=0.340 Sum_probs=84.3
Q ss_pred hhhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCcccceEEEEEeeEEee-c
Q 000133 1993 QSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVML-G 2071 (2100)
Q Consensus 1993 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 2071 (2100)
...|.+.-++.+++|+...++|+++.++.||+|+|.|.+.+. .+..+.|.|.|+++.+|+.+.+|++.|+|.++... +
T Consensus 8 ~~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~-~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~ 86 (111)
T cd04052 8 SKTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVT-DRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATS 86 (111)
T ss_pred ccCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEec-CcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhh
Confidence 345667789999998877889999999999999999999886 45688999999999999888899999999999764 4
Q ss_pred ccccceeecCCCCCCCCcceEEEEEecC
Q 000133 2072 AVAGEYTLLPESKSGPSRNLEIEFLWSN 2099 (2100)
Q Consensus 2072 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2099 (2100)
...+-|.|.+ .+.|. |.++++|-+
T Consensus 87 ~~~~w~~L~~-~~~G~---i~~~~~~~p 110 (111)
T cd04052 87 VGQQWFPLSG-NGQGR---IRISALWKP 110 (111)
T ss_pred ccceeEECCC-CCCCE---EEEEEEEec
Confidence 5577888854 44555 558899864
No 85
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=98.68 E-value=2.1e-08 Score=103.94 Aligned_cols=102 Identities=25% Similarity=0.451 Sum_probs=86.4
Q ss_pred CCceeeeeccchhhhh--hCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCc-
Q 000133 1979 GTLVVIIKRGNNMKQS--VGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKS- 2055 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 2055 (2100)
|+|.|+|.+..+++.. +|...-++.+.+++....+|++++++.+|+|+|.|.|... +..+.|.|+|++++.||++
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~--~~~~~L~v~v~d~~~~~~d~ 78 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVT--SPNQKITLEVMDYEKVGKDR 78 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEec--CCCCEEEEEEEECCCCCCCC
Confidence 7899999999988774 4556688999997667788999999999999999887655 3368999999999999886
Q ss_pred ccceEEEEEeeEEeecccccceeecCCC
Q 000133 2056 SFGKVTIQIDRVVMLGAVAGEYTLLPES 2083 (2100)
Q Consensus 2056 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2083 (2100)
.+|++++.+.+++.. ...|.|.|..++
T Consensus 79 ~IG~~~~~l~~l~~~-~~~~~~~~~~~~ 105 (120)
T cd04045 79 SLGSVEINVSDLIKK-NEDGKYVEYDDE 105 (120)
T ss_pred eeeEEEEeHHHhhCC-CCCceEEecCCC
Confidence 569999999998765 789999995555
No 86
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=98.68 E-value=2.7e-08 Score=104.23 Aligned_cols=100 Identities=18% Similarity=0.336 Sum_probs=85.3
Q ss_pred ceeeeeccchhhhh--hCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCc-cc
Q 000133 1981 LVVIIKRGNNMKQS--VGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKS-SF 2057 (2100)
Q Consensus 1981 ~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 2057 (2100)
|+|+|++..++... .|.+.-|+.+.+|+ ...+|+++.++.||+|+|.|.|.+.. +.++.|.|+|++++.||+. .+
T Consensus 2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~-~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~~l~~~v~d~~~~~~~~~i 79 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNG-QTLETSVVKKSCYPRWNEVFEFELME-GADSPLSVEVWDWDLVSKNDFL 79 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCcCceEEEEECC-EEEeceeecCCCCCccCcEEEEEcCC-CCCCEEEEEEEECCCCCCCcEe
Confidence 68999999998654 34466889999975 45789999999999999999999874 3478999999999999875 56
Q ss_pred ceEEEEEeeEEeecccccceeecCC
Q 000133 2058 GKVTIQIDRVVMLGAVAGEYTLLPE 2082 (2100)
Q Consensus 2058 ~~~~~~~~~~~~~~~~~~~~~~~~~ 2082 (2100)
|++.+++..+...+...+-|.|.+.
T Consensus 80 G~~~~~l~~l~~~~~~~~w~~L~~~ 104 (123)
T cd04025 80 GKVVFSIQTLQQAKQEEGWFRLLPD 104 (123)
T ss_pred EEEEEEHHHcccCCCCCCEEECCCC
Confidence 9999999999888888999999875
No 87
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=98.68 E-value=4.9e-08 Score=101.97 Aligned_cols=101 Identities=18% Similarity=0.315 Sum_probs=83.3
Q ss_pred ceeeeeccchhhh--hhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCC---c
Q 000133 1981 LVVIIKRGNNMKQ--SVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGK---S 2055 (2100)
Q Consensus 1981 ~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 2055 (2100)
|.|+|.+..++.. .+|.+.-|+.+.+++....+|+|++++.||+|||.|.|.+. + ++.|.|+|+++++||+ +
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~--~-~~~l~i~V~d~~~~~~~~d~ 78 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVG--P-SSIITIQVFDQKKFKKKDQG 78 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeC--C-CCEEEEEEEECCCCCCCCCc
Confidence 6789999888864 35667789999997677889999999999999999999985 2 8899999999999986 4
Q ss_pred ccceEEEEEeeEEeeccc-ccceeecCCCC
Q 000133 2056 SFGKVTIQIDRVVMLGAV-AGEYTLLPESK 2084 (2100)
Q Consensus 2056 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 2084 (2100)
.+|++.|++++++..+.. ...|.|.+.++
T Consensus 79 ~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~ 108 (123)
T cd08382 79 FLGCVRIRANAVLPLKDTGYQRLDLRKLKK 108 (123)
T ss_pred eEeEEEEEHHHccccCCCccceeEeecCCC
Confidence 689999999999876554 55777754444
No 88
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.67 E-value=2.9e-08 Score=105.30 Aligned_cols=112 Identities=20% Similarity=0.331 Sum_probs=91.8
Q ss_pred CCCceeeeeccchhhhhh------------CCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEE
Q 000133 1978 PGTLVVIIKRGNNMKQSV------------GNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHIS 2045 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2045 (2100)
.|.|.|+|++..+++..- |....++.+.+|+....+|++.+++.+|.|||.|++.+. .+..+.|.
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~---~~~~l~~~ 79 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH---NGRNLELT 79 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC---CCCEEEEE
Confidence 689999999999996432 356789999998777789999999999999999998874 46799999
Q ss_pred eecCCccCCc-ccceEEEEEeeEEe--ecccccceeecCCCCCCCCcceEEEEEec
Q 000133 2046 CKNKSKMGKS-SFGKVTIQIDRVVM--LGAVAGEYTLLPESKSGPSRNLEIEFLWS 2098 (2100)
Q Consensus 2046 ~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2098 (2100)
|++++.++++ .+|++.|+++.+.. .+.....|.|.+ .|. +.+++.|.
T Consensus 80 v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~---~G~---l~l~~~~~ 129 (132)
T cd04014 80 VFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLEP---QGK---LHVKIELK 129 (132)
T ss_pred EEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEccC---CcE---EEEEEEEe
Confidence 9999998774 56999999999988 566777888863 454 44777774
No 89
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=98.67 E-value=2.3e-08 Score=102.44 Aligned_cols=92 Identities=24% Similarity=0.457 Sum_probs=75.4
Q ss_pred CCceeeeeccchhhh--hh-CCCcceEEEecC-C-CCCccccccccCCCccccccceeccccCC---CCCeEEEEeecCC
Q 000133 1979 GTLVVIIKRGNNMKQ--SV-GNPSVYCKLTLG-N-TPPRQTKIVSTGPNPEWEESFAWSFEIPP---KGQKLHISCKNKS 2050 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~--~~-~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 2050 (2100)
|+|+|+|.+..++.. .. |...-|+.+.++ + ....+|+|++++.||+|+|.|.+.+. ++ ..+.|.++|++++
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~-~~~~~~~~~l~~~V~d~d 79 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVT-PDEVKAGERLSCRLWDSD 79 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeC-chhccCCCEEEEEEEeCC
Confidence 899999999999864 33 566788888774 2 35679999999999999999997765 44 4579999999999
Q ss_pred ccCC-cccceEEEEEeeEEeec
Q 000133 2051 KMGK-SSFGKVTIQIDRVVMLG 2071 (2100)
Q Consensus 2051 ~~~~-~~~~~~~~~~~~~~~~~ 2071 (2100)
.||+ +.+|++.|.+.++...+
T Consensus 80 ~~~~dd~lG~~~i~l~~l~~~~ 101 (111)
T cd04041 80 RFTADDRLGRVEIDLKELIEDR 101 (111)
T ss_pred CCCCCCcceEEEEEHHHHhcCC
Confidence 9986 56699999999987543
No 90
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=1.6e-05 Score=100.08 Aligned_cols=408 Identities=15% Similarity=0.125 Sum_probs=248.4
Q ss_pred CHHHHHHHHHHHHHH-hhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHH
Q 000133 198 QSSTQAHVCFLLACM-MEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMI 276 (2100)
Q Consensus 198 ~~~v~~~a~~~L~~L-~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv 276 (2100)
|+..|..++.=|..+ .+..++....|--...+|.|+++|+..++.++...|+.+|.+|+.-.|.....+++.++||.|+
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~ 260 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLL 260 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHH
Confidence 555555554444333 3555555555555677999999999988889999999999999988888888999999999999
Q ss_pred HhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCc
Q 000133 277 NATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDP 356 (2100)
Q Consensus 277 ~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~ 356 (2100)
.-|..-. .-++.|+++.||-.|+...+.
T Consensus 261 ~kL~~Ie--------yiDvAEQ~LqALE~iSR~H~~-------------------------------------------- 288 (1051)
T KOG0168|consen 261 EKLLTIE--------YIDVAEQSLQALEKISRRHPK-------------------------------------------- 288 (1051)
T ss_pred Hhhhhhh--------hhHHHHHHHHHHHHHHhhccH--------------------------------------------
Confidence 8886532 246778888888777753221
Q ss_pred hhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCcc-ch
Q 000133 357 LIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGS-LW 435 (2100)
Q Consensus 357 ~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~-~~ 435 (2100)
.+-++|++-..+..++-=+..+|+.|+....|.|..=.. --
T Consensus 289 --------------------------------------AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f 330 (1051)
T KOG0168|consen 289 --------------------------------------AILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEF 330 (1051)
T ss_pred --------------------------------------HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 112234444444444433456788888888888865322 12
Q ss_pred HHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccC---CcccHHHHHhcCChHHHHHhccCC----CHHHHHHHHHHH
Q 000133 436 RALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNE---NDDSKWAITAAGGIPPLVQILESG----SAKAKEDSASIL 508 (2100)
Q Consensus 436 ~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~---~~~~~~~i~~~g~i~~Lv~lL~~~----~~~vre~A~~aL 508 (2100)
..+. .++|.|..+|...+....+.++.+++.++.. .++.-+.+...|-|....+|+.-. +..+.......|
T Consensus 331 ~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrml 408 (1051)
T KOG0168|consen 331 HFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRML 408 (1051)
T ss_pred hHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHH
Confidence 2333 6899999999999999999999888888643 455677788889898888888654 334455667788
Q ss_pred HHHhcCChhhHHHHHhCCcHHHHHHHhhcCCh--------------hHHHHHHHHHHHHhcCCCC---------------
Q 000133 509 RNLCNHSEDIRACVESADAVPALLWLLKNGSA--------------NGKEIAAKTLNHLIHKSDT--------------- 559 (2100)
Q Consensus 509 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~--------------~~~~~Aa~aL~~L~~~~~~--------------- 559 (2100)
..+|..++.......+.+....|-.+|...+. .-.-.....+..|..-.+.
T Consensus 409 s~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~ 488 (1051)
T KOG0168|consen 409 SLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIV 488 (1051)
T ss_pred HHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccc
Confidence 88888878888888888888888888865221 1000000000000000000
Q ss_pred ----Cc-----------------HHHHHHHhhcCCcchHHHHHHHHH---HHHhccCchhHHHHhhhccchHHHHHHHhc
Q 000133 560 ----AT-----------------ISQLTALLTSDLPESKVYVLDALK---SMLSVVSFSDILREGSAANDAVETMIKILS 615 (2100)
Q Consensus 560 ----~~-----------------i~~L~~lL~~~~~~~~~~a~~aL~---~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~ 615 (2100)
+. ...++.-.+++....+.. .+-+. .-..+.+.+++.+.-+ ...+|.|++...
T Consensus 489 n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~-~dkl~~~~r~~~l~nqpel~q~F~--~~llpVLveVYs 565 (1051)
T KOG0168|consen 489 NLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQ-QDKLNGSAREGLLKNQPELLQSFG--KDLLPVLVEVYS 565 (1051)
T ss_pred cccccccccCccccccccccchhhhhhhhhhccCcccchhh-hhhcCCchhhhhhhcCHHHHHHHH--HHHHHHHHHHHh
Confidence 00 001111111111100000 00000 0111234455544433 334889999775
Q ss_pred -CCCHHHHHHHHHHHHHHhcCC-hhhHHHHHhcC-chHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCCh
Q 000133 616 -STKEETQAKSASALAGIFETR-KDLRESSIAVK-TLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDAL 692 (2100)
Q Consensus 616 -s~~~~~~~~Aa~aL~~L~~~~-~~~~~~~~~~g-~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l 692 (2100)
+.++.+|+.+..+|..+.... .+....+.... +-..+--.|.+.+..+...|++...-|+...++.--..|...|.+
T Consensus 566 SsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~ 645 (1051)
T KOG0168|consen 566 SSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVF 645 (1051)
T ss_pred ccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHH
Confidence 569999999999999986543 33444444333 333444445666666666666666666555444433335555555
Q ss_pred HHHHHHhC
Q 000133 693 SPLVVLAG 700 (2100)
Q Consensus 693 ~~Lv~ll~ 700 (2100)
...-+|..
T Consensus 646 ~~v~~L~~ 653 (1051)
T KOG0168|consen 646 HAVKQLSV 653 (1051)
T ss_pred HHHHHHhc
Confidence 55555544
No 91
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=98.65 E-value=2e-08 Score=106.84 Aligned_cols=92 Identities=28% Similarity=0.490 Sum_probs=78.4
Q ss_pred CCceeeeeccchhhh-hhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCC-cc
Q 000133 1979 GTLVVIIKRGNNMKQ-SVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGK-SS 2056 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 2056 (2100)
|.|+|+|.|..++.. ..+.+.-|+.+.+|+ .+.+|+|++++.||+|+|.|+|.+..| .+.+.++|+++++||+ +.
T Consensus 2 G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~-~~~kT~vvk~t~nP~WnE~f~f~i~~~--~~~l~~~V~D~d~~~~dd~ 78 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDFTSSDPYVVLTLGN-QKVKTRVIKKNLNPVWNEELTLSVPNP--MAPLKLEVFDKDTFSKDDS 78 (145)
T ss_pred eEEEEEEEeeECCCCCCCCCcCcEEEEEECC-EEEEeeeEcCCCCCeecccEEEEecCC--CCEEEEEEEECCCCCCCCE
Confidence 889999999999943 335667889999975 578999999999999999999998744 8899999999999987 55
Q ss_pred cceEEEEEeeEEeeccc
Q 000133 2057 FGKVTIQIDRVVMLGAV 2073 (2100)
Q Consensus 2057 ~~~~~~~~~~~~~~~~~ 2073 (2100)
+|++.+.++.++.....
T Consensus 79 iG~a~i~l~~l~~~~~~ 95 (145)
T cd04038 79 MGEAEIDLEPLVEAAKL 95 (145)
T ss_pred EEEEEEEHHHhhhhhhh
Confidence 69999999998875443
No 92
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=1.8e-05 Score=98.57 Aligned_cols=377 Identities=15% Similarity=0.101 Sum_probs=247.4
Q ss_pred HHHHHhhcCCCCChHHHHHHHHHHHHHhCC-CccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHH
Q 000133 360 EQTLVNQFKPRLPFLVQERTIEALASLYGN-PLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRAL 438 (2100)
Q Consensus 360 ~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~-~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i 438 (2100)
.+.+-+.|.+.....++.....-...++.+ +.....+. ..+..++.-+..+++.+|+....||..+........
T Consensus 57 ~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~--~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~--- 131 (569)
T KOG1242|consen 57 KPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPI--SIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLS--- 131 (569)
T ss_pred HHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchh--HHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccC---
Confidence 344444555554555666666666666322 22222221 235567777888899999999999998776543321
Q ss_pred HhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCC-HHHHHHHHHHHHHHhcCChh
Q 000133 439 QGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGS-AKAKEDSASILRNLCNHSED 517 (2100)
Q Consensus 439 ~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~vre~A~~aL~~L~~~~~~ 517 (2100)
.....+.+.++++..+...+..+++.+..+.. ......+.+.+.+..|-....+.. ...|+.+.-+....+.+...
T Consensus 132 -~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~--g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~ 208 (569)
T KOG1242|consen 132 -GEYVLELLLELLTSTKIAERAGAAYGLAGLVN--GLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGP 208 (569)
T ss_pred -HHHHHHHHHHHhccccHHHHhhhhHHHHHHHc--CcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCC
Confidence 11345778888998888899999999999985 345566777788888888888774 44444444444444432221
Q ss_pred hHHHHHhCCcHHHHHHHhh---cCChhHHHHHHHHHHHHhcCCCC----CcHHHHHHHhhcCCcchHHHHHHHHHHHHhc
Q 000133 518 IRACVESADAVPALLWLLK---NGSANGKEIAAKTLNHLIHKSDT----ATISQLTALLTSDLPESKVYVLDALKSMLSV 590 (2100)
Q Consensus 518 ~~~~i~~~g~i~~Lv~lL~---~~~~~~~~~Aa~aL~~L~~~~~~----~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~ 590 (2100)
. .+...++.+-.++. +..+.+++.|..+...+-..-.+ ..+|+++.-+.+..+..+.++++.+|.++..
T Consensus 209 ~----~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ 284 (569)
T KOG1242|consen 209 P----FEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADC 284 (569)
T ss_pred C----CCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 1 13344454445544 45667887777777665543333 4566666667777889999999999999888
Q ss_pred cCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHH
Q 000133 591 VSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRC 670 (2100)
Q Consensus 591 ~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~a 670 (2100)
++..- ...-...+|.+.+.|.+.++++|+.+..+|-+++..-+ +-+ -...+|.|++.+.+++.. ..++...
T Consensus 285 ap~qL----s~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svid-N~d---I~~~ip~Lld~l~dp~~~-~~e~~~~ 355 (569)
T KOG1242|consen 285 APKQL----SLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVID-NPD---IQKIIPTLLDALADPSCY-TPECLDS 355 (569)
T ss_pred chHHH----HHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhc-cHH---HHHHHHHHHHHhcCcccc-hHHHHHh
Confidence 77432 23335569999999999999999999999999987522 211 124688999999887732 2333333
Q ss_pred HHHHhcCCchhHHHHHHhCCChHHHHHH----hCCCCHHHHHHHHHHHHHHh--cCcHHHHHHHHcCcHHHHHHHHccCC
Q 000133 671 LAAIFLSVRENREVAAVARDALSPLVVL----AGSPVLEVAEQATCALANLI--LDSEVSEKAIAEEIILPATRVLCEGT 744 (2100)
Q Consensus 671 L~~L~~~~~~~~~~~~~~~~~l~~Lv~l----l~~~~~evr~~aa~aL~~L~--~~~~~~~~~v~~~~v~~L~~ll~~~~ 744 (2100)
|+.-.. +..++...+..++.+ +...+.+++..++...+|++ ...+......-+.++|.|-..+....
T Consensus 356 L~~ttF-------V~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~ 428 (569)
T KOG1242|consen 356 LGATTF-------VAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAV 428 (569)
T ss_pred hcceee-------eeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCC
Confidence 332210 012333444444444 44567778899999999998 32344444455788888888888888
Q ss_pred hhHHHHHHHHHHHHHhcCcc
Q 000133 745 ISGKTLAAAAIARLLHSRKI 764 (2100)
Q Consensus 745 ~~~~~~Aa~aL~~l~~~~~~ 764 (2100)
+++|.-+++||..+.+....
T Consensus 429 PEvR~vaarAL~~l~e~~g~ 448 (569)
T KOG1242|consen 429 PEVRAVAARALGALLERLGE 448 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHh
Confidence 89999999999888875544
No 93
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=0.0061 Score=78.41 Aligned_cols=506 Identities=14% Similarity=0.141 Sum_probs=311.7
Q ss_pred HHHHHhcCCHHHHHHhHcc-----------CCH--HHHHHHHHHHHHHhhcCcchhhHHhh-hchHHHHHHHhcCCCCHH
Q 000133 178 WAATVQAGGIDILVKLLTL-----------GQS--STQAHVCFLLACMMEEDVSVCSRVLA-ADATKQLLKLLGSGNEAS 243 (2100)
Q Consensus 178 ~~~i~~~g~v~~Lv~lL~s-----------~~~--~v~~~a~~~L~~L~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~ 243 (2100)
...++..||++.|..+++. .++ .+..+.+.+++- +...+..+..+.+ ...|.-|++++.-++-+.
T Consensus 1420 aEELrRdnGle~L~tafSRCv~Vvt~~s~p~dmav~vc~~v~~c~SV-aaQFE~cR~~~~EmPSiI~Dl~r~l~f~~vPr 1498 (2235)
T KOG1789|consen 1420 AEELRRDNGLEALVTAFSRCVPVVTMSSLPDDMAVRVCIHVCDCFSV-AAQFEACRQRLMEMPSIIGDLTRLLQFSNLPR 1498 (2235)
T ss_pred HHHHhhcccHHHHHHHHhhhheeeccccCCCcchhhHHHHHHHHHHH-HHHHHHHHHHHhhhhHHHHHHHHHHHhccccH
Confidence 3557888999999998863 233 344677777743 3445557777765 466777888877655456
Q ss_pred HHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCC-----------cchhhhhhhHHHHHHHHHHHHHhhCCCcc
Q 000133 244 VRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPS-----------KEFMQGEYAQALQENAMCALANISGGLSN 312 (2100)
Q Consensus 244 v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~-----------~e~~~~~~~~~l~~~a~~aL~nl~~~~~~ 312 (2100)
+...|+.+++.++- ++..+-.+.++|.+=.|+.+|..-+ .+..+......+...++.+|..+.+-
T Consensus 1499 ~~~aa~qci~~~aV-d~~LQ~~LfqAG~LWYlLp~Lf~YDyTlEESg~q~Se~~n~Q~~aNslA~~s~~ALSRL~G~--- 1574 (2235)
T KOG1789|consen 1499 LSTAAAQCIRAMAV-DTLLQFQLFQAGVLWYLLPHLFHYDYTLEESGVQHSEDSNKQSLANSLARSSCEALSRLAGF--- 1574 (2235)
T ss_pred HHHHHHHHHHHHhh-hHHHHHHHHHhhhHHHHHHHHhcccccccccCccccccchHHHHHHHHHHHHHHHHHHHhcc---
Confidence 77888889999987 7888899999999988887775432 11122223344555666777665541
Q ss_pred hhhhccccccCCCChhhhhhhhhhh------------------------------------HHHHHHhcc------cc--
Q 000133 313 VISSLGQSLESCSSPAQVADTLGAL------------------------------------ASALMIYDS------KA-- 348 (2100)
Q Consensus 313 ~i~~l~~~~~~~~~~~~~~~~~gal------------------------------------~~ll~~l~~------~~-- 348 (2100)
+++....|.+........|.+ +-++.+++. +.
T Consensus 1575 ----~AdE~~TP~N~T~~~sL~alLTPyiAr~Lk~e~~~~iLk~LNsN~E~Py~IWNn~TRaELLeFve~Qracq~~~G~ 1650 (2235)
T KOG1789|consen 1575 ----RADEENTPDNDTVQASLRALLTPYIARCLKLETNDMVLKTLNSNMENPYMIWNNGTRAELLEFVERQRACQTSNGP 1650 (2235)
T ss_pred ----ccccccCCCChhHHHHHHHhccHHHHHHHHHHHHHHHHHHhhcCCCCceeeecCccHHHHHHHHHHHHhccCCCCC
Confidence 111111222222211111111 111111110 00
Q ss_pred -------------CCCC------------------CCCchhhHHHHHhhcCC----------------------------
Q 000133 349 -------------ESTK------------------PSDPLIVEQTLVNQFKP---------------------------- 369 (2100)
Q Consensus 349 -------------~~~~------------------~~~~~~i~~~Lv~lL~~---------------------------- 369 (2100)
-.+| .-.|..+-..|+...++
T Consensus 1651 ~D~~yg~eF~Ys~h~KEliVG~ifirVYNeqPtf~l~ePk~Fa~~LlDyI~S~~~~l~~~~~~~~~s~d~ie~~~~V~sE 1730 (2235)
T KOG1789|consen 1651 TDELYGAEFEYSVHKKELIVGDIFIRVYNEQPTFALHEPKKFAIDLLDYIKSHSAELTGAPKPKAISDDLIEIDWGVGSE 1730 (2235)
T ss_pred chhhccceeeehhhccceeeeeEEEEeecCCCchhhcCcHHHHHHHHHHHHHhHHHhcCCCCccccccchhhhhcccchh
Confidence 0000 01222222222222111
Q ss_pred --C---CChHHHHHHHHHHHHH-hCCCccchhhh----ccccHHHHHHhhc-CCCHHHHHHHHHHHHHhhccCccchHHH
Q 000133 370 --R---LPFLVQERTIEALASL-YGNPLLSIKLE----NSEAKRLLVGLIT-MATNEVQEELVRALLKLCNNEGSLWRAL 438 (2100)
Q Consensus 370 --~---~~~~vq~~aa~aL~~L-~~~~~~~~~l~----~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~~L~~~~~~~~~~i 438 (2100)
+ +.+.--+.+..+|.|+ ..+|+....+. -.|-.+.++..+. .+++.++.-|...+..+..+ .+.-..+
T Consensus 1731 ~HgD~lPs~~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan-~~Cv~~~ 1809 (2235)
T KOG1789|consen 1731 AHGDSLPTETKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATAN-KECVTDL 1809 (2235)
T ss_pred hhcCCCChHHHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc-cHHHHHH
Confidence 0 1112234577888888 67786644333 2355667777776 45788999999988877776 4455677
Q ss_pred HhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCC-CHHHHHHHHHHHHHHhcCC--
Q 000133 439 QGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG-SAKAKEDSASILRNLCNHS-- 515 (2100)
Q Consensus 439 ~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~vre~A~~aL~~L~~~~-- 515 (2100)
...+.+..|+.+|.+ -+..++.+...|..|++ +++..++..++||+.-+..++... ++++|.+++..|+.|..+.
T Consensus 1810 a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S-~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~ 1887 (2235)
T KOG1789|consen 1810 ATCNVLTTLLTLLHS-QPSMRARVLDVLYALSS-NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLT 1887 (2235)
T ss_pred HhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhc-CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhcccc
Confidence 788888888888865 47888899999999996 788888899999998888877654 7899999999999998641
Q ss_pred -hhhHH-----------HHHhCCcHHHHHHHhhcC--------ChhHHHHHHHHHHHHhcCC------C-----------
Q 000133 516 -EDIRA-----------CVESADAVPALLWLLKNG--------SANGKEIAAKTLNHLIHKS------D----------- 558 (2100)
Q Consensus 516 -~~~~~-----------~i~~~g~i~~Lv~lL~~~--------~~~~~~~Aa~aL~~L~~~~------~----------- 558 (2100)
|..+. .+.+. +-++.|..++.. ++..+......+..|...- +
T Consensus 1888 GPrV~ITL~kFLP~~f~d~~RD-~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqs 1966 (2235)
T KOG1789|consen 1888 GPRVTITLIKFLPEIFADSLRD-SPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQS 1966 (2235)
T ss_pred CCceeeehHHhchHHHHHHHhc-CHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhh
Confidence 11111 11111 225566666542 2334444455555554310 0
Q ss_pred -----------------------C------------CcHHHHHHHhhcCCcchHHH--HHHHHHHHHhccCchhHHHHhh
Q 000133 559 -----------------------T------------ATISQLTALLTSDLPESKVY--VLDALKSMLSVVSFSDILREGS 601 (2100)
Q Consensus 559 -----------------------~------------~~i~~L~~lL~~~~~~~~~~--a~~aL~~l~~~~~~~~~~~~~i 601 (2100)
| +.+++++.++...+++...- -..|+-.+.. -++. ....+
T Consensus 1967 Ag~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r--~hP~-LADqi 2043 (2235)
T KOG1789|consen 1967 AGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVR--HHPN-LADQL 2043 (2235)
T ss_pred cchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHH--hCcc-hhhhC
Confidence 0 33555666676666653222 1122222222 2222 23356
Q ss_pred hccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchh
Q 000133 602 AANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVREN 681 (2100)
Q Consensus 602 ~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~ 681 (2100)
..-|-+|.++..+...+..+-..|.+.|..|+.+ .-..+++.....+.+++.++...- ...--|+.+|..+.....+.
T Consensus 2044 p~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen-~~C~~AMA~l~~i~~~m~~mkK~~-~~~GLA~EalkR~~~r~~~e 2121 (2235)
T KOG1789|consen 2044 PSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSEN-QFCCDAMAQLPCIDGIMKSMKKQP-SLMGLAAEALKRLMKRNTGE 2121 (2235)
T ss_pred CCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhc-cHHHHHHhccccchhhHHHHHhcc-hHHHHHHHHHHHHHHHhHHH
Confidence 6778899999988776666668899999999986 566777888888888888886543 34557888888887755544
Q ss_pred HHHHHHhCCChHHHHHHhCC
Q 000133 682 REVAAVARDALSPLVVLAGS 701 (2100)
Q Consensus 682 ~~~~~~~~~~l~~Lv~ll~~ 701 (2100)
--......|.+|.|++++..
T Consensus 2122 LVAQ~LK~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2122 LVAQMLKCGLVPYLLQLLDS 2141 (2235)
T ss_pred HHHHHhccCcHHHHHHHhcc
Confidence 44446789999999999975
No 94
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=98.64 E-value=3e-08 Score=101.34 Aligned_cols=99 Identities=17% Similarity=0.408 Sum_probs=84.0
Q ss_pred ceeeeeccchhhhh---hCCCcceEEEecCCCCCccccccccCCCccc-cccceeccccCC-CCCeEEEEeecCCccCCc
Q 000133 1981 LVVIIKRGNNMKQS---VGNPSVYCKLTLGNTPPRQTKIVSTGPNPEW-EESFAWSFEIPP-KGQKLHISCKNKSKMGKS 2055 (2100)
Q Consensus 1981 ~~~~~~r~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 2055 (2100)
|+|+|.+..++... .|...-|+.+.+|+ ..++|+|++++.||+| +|.|+|.+..+. ..+.|.|+|++++.||++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~-~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~ 79 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGS-TTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAN 79 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECC-eeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCC
Confidence 68999999998642 34566899999987 7888999999999999 999999886544 357999999999999886
Q ss_pred -ccceEEEEEeeEEe---ecccccceeec
Q 000133 2056 -SFGKVTIQIDRVVM---LGAVAGEYTLL 2080 (2100)
Q Consensus 2056 -~~~~~~~~~~~~~~---~~~~~~~~~~~ 2080 (2100)
.+|++.+.++.+.. .+.+++-|.|.
T Consensus 80 ~~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 80 DAIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred CceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 57999999999999 56799999983
No 95
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=0.00012 Score=92.11 Aligned_cols=356 Identities=14% Similarity=0.168 Sum_probs=224.9
Q ss_pred CChHHHHHhhcc-CChhhHHHHHHHHHHhhcCCchhhHHHHhhhcchhHHHHHHHhhc-CChhhHHHHHHHHHHHhcCcc
Q 000133 1272 QAVQPLVEILNT-GLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSN-CSMELKGDAAELCGVLFGNTR 1349 (2100)
Q Consensus 1272 ~~i~~Lv~lL~~-~~~~~~~~A~~aL~~La~~~~~~~~~~~~v~~gal~~L~~lL~~~-~~~~~~~~a~~~L~~L~~~~~ 1349 (2100)
..|+.|++=+.+ .-.+-|+.|+.+|-.++ ...|.. |.+.++++|+..|... .|.+....++..+.+++++.+
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~s--rkYR~~----Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd 95 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFS--RKYREE----VGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDD 95 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHH--HHHHHH----HHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc
Confidence 346777765543 34567888998888877 122222 4667899999999654 778899999999999988764
Q ss_pred h-------H-----------HHHHhhcChHHHHHHHhcCCchHHHHHHHHHHHhcc--cHHHHH-HHHhcCCHHHHHHhh
Q 000133 1350 I-------R-----------STVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVD--DEQLAE-LVAAHGAVIPLVGLL 1408 (2100)
Q Consensus 1350 ~-------r-----------~~~~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~--~~~~~~-~~~~~g~i~~L~~lL 1408 (2100)
. + .-+-..+.|..|+..+...|-.+|..++.-|..+.. ..+.+. .+..+-.|..|+.+|
T Consensus 96 ~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL 175 (970)
T KOG0946|consen 96 SPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL 175 (970)
T ss_pred chhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH
Confidence 1 1 122345678888888888999999999999999983 334444 345567899999999
Q ss_pred cCCChhHHHHHHHHHHHhhcCCchhhHHHHhcCcHHHHHHHhccCChhHHHHHHHHHHHHHhccCCcccccccCchHHHH
Q 000133 1409 YGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLF 1488 (2100)
Q Consensus 1409 ~~~~~~vr~~A~~aL~~La~~~~~~k~~i~~~~~i~~lv~~L~~~~~~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll 1488 (2100)
.+.-..+|..++-.|..++++++.....++-.++.+.+..++..+. .
T Consensus 176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEG-------------------g-------------- 222 (970)
T KOG0946|consen 176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEG-------------------G-------------- 222 (970)
T ss_pred hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcC-------------------C--------------
Confidence 9999999999999999999998544444333444444444433221 0
Q ss_pred HHhccCCCCchhHhHHHHHHHHhhcCCCcccccccccCCChHhhhhccC---CCCHHHHHHHHHHHHHhhcccccccccc
Q 000133 1489 LLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLD---SPAPAVQQLAAELLSHLLLEEQLQKDPV 1565 (2100)
Q Consensus 1489 ~ll~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~~~~~~~~l~~Lv~~L~---~~~~~vq~~a~~aL~~l~~~~~~~~~l~ 1565 (2100)
.+|..+..+|+..|.||..+..+.+.+ +.+.++++.|..+|. .++.++-.-...-..++-
T Consensus 223 ------~dGgIVveDCL~ll~NLLK~N~SNQ~~-FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~---------- 285 (970)
T KOG0946|consen 223 ------LDGGIVVEDCLILLNNLLKNNISNQNF-FREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVI---------- 285 (970)
T ss_pred ------CCCcchHHHHHHHHHHHHhhCcchhhH-HhccccHHHHHhhcCcccccCcccccccHHHHHHHH----------
Confidence 055678888999999999998888776 688899999997775 222211000000000000
Q ss_pred ccCchHHHHHHhccCCHHHHHHHHHHHHHhhcCChhHHHhccChHHHHHHhcccCCCchHHHHHHHHHHHHhhhcccch-
Q 000133 1566 TQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVTELSKIILQADPSLPHALWESAASVLSSILQFSSE- 1644 (2100)
Q Consensus 1566 ~~g~i~~Lv~lL~s~~~~vr~~Al~AL~~Ls~~~~n~l~~~G~i~~Ll~lL~~~~~~~~~~l~e~a~~~L~~i~~~~~~- 1644 (2100)
-++..+-.+...+++.--.++..+ .|...+++..|..++.+ ++++..+.-.+..+.++.+++...
T Consensus 286 --~~Lqivr~lVsP~Nt~~~~~q~qk----------~l~ss~ll~~Lc~il~~--~~vp~dIltesiitvAevVRgn~~n 351 (970)
T KOG0946|consen 286 --EALQIVRSLVSPGNTSSITHQNQK----------ALVSSHLLDVLCTILMH--PGVPADILTESIITVAEVVRGNARN 351 (970)
T ss_pred --HHHHHHHHhcCCCCcHHHHHHHHH----------HHHHcchHHHHHHHHcC--CCCcHhHHHHHHHHHHHHHHhchHH
Confidence 011111111222333222222211 26677788999999987 337777777688888888876543
Q ss_pred ---hh------hcccHHHHH----HHhh-cCCHHHHHHHHHHHHHhccCChhhHHHHHHcccHHHHHHHHhc
Q 000133 1645 ---FY------LEVPVAVLV----RLLR-SGSEGTVIGSLNALLVLESDDGTSAEAMAESGAIEALLELLRS 1702 (2100)
Q Consensus 1645 ---~~------~~~~v~~Lv----~ll~-~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Li~lL~s 1702 (2100)
|. .+.+.+.++ .+.. ......|++.+.++-.....+..... ..+..|++.-.+
T Consensus 352 Q~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~-----~~l~tllp~~~n 418 (970)
T KOG0946|consen 352 QDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQR-----KFLKTLLPSSTN 418 (970)
T ss_pred HHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHH-----HHHHHHhhhhcc
Confidence 11 111233332 3333 33357888888888766655543322 334555555433
No 96
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=98.62 E-value=3.8e-08 Score=99.64 Aligned_cols=90 Identities=14% Similarity=0.247 Sum_probs=74.5
Q ss_pred CCceeeeeccchhhhh--h---C-CCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCcc
Q 000133 1979 GTLVVIIKRGNNMKQS--V---G-NPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKM 2052 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~--~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2052 (2100)
|+|.|+|.+..++... + | ...-|+.+.+|+ ...+|+|++++.||+|+|.|.|.+.....++.|.++|++++.|
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~-~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~ 79 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGR-RVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKF 79 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECC-EeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCC
Confidence 8999999999999753 1 1 245688888874 4568999999999999999999887555566999999999999
Q ss_pred CCcc-cceEEEEEeeEEe
Q 000133 2053 GKSS-FGKVTIQIDRVVM 2069 (2100)
Q Consensus 2053 ~~~~-~~~~~~~~~~~~~ 2069 (2100)
|++. +|++.|.+.++..
T Consensus 80 ~~dd~IG~~~l~L~~l~~ 97 (108)
T cd04039 80 SFNDYVATGSLSVQELLN 97 (108)
T ss_pred CCCcceEEEEEEHHHHHh
Confidence 7755 5999999988765
No 97
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=98.61 E-value=5.4e-08 Score=101.82 Aligned_cols=102 Identities=18% Similarity=0.247 Sum_probs=79.2
Q ss_pred CCCceeeeeccchhhhhh---CCCcceEEEecCC----CCCccccccccCCCccccccceeccccCC-CCCeEEEEeecC
Q 000133 1978 PGTLVVIIKRGNNMKQSV---GNPSVYCKLTLGN----TPPRQTKIVSTGPNPEWEESFAWSFEIPP-KGQKLHISCKNK 2049 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 2049 (2100)
.|.|+|+|.+..++...- |...-|.++.+.. ...++|||++++.||+|||.|.|.+.... .+..|.+.|+++
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~ 93 (125)
T cd08393 14 LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHR 93 (125)
T ss_pred CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeC
Confidence 367999999999996543 4566777777743 34578999999999999999999876433 345899999999
Q ss_pred CccCCc-ccceEEEEEeeEEeecccccceee
Q 000133 2050 SKMGKS-SFGKVTIQIDRVVMLGAVAGEYTL 2079 (2100)
Q Consensus 2050 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 2079 (2100)
+.||++ .+|.+.|++.++-..+....-|.|
T Consensus 94 ~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 94 DSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred CCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence 999876 569999999998655554444544
No 98
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=98.61 E-value=4.3e-08 Score=102.56 Aligned_cols=91 Identities=20% Similarity=0.261 Sum_probs=73.6
Q ss_pred CCCceeeeeccchhhhh---hCCCcceEEEecCCC----CCccccccccCCCccccccceeccccCCC-CCeEEEEeecC
Q 000133 1978 PGTLVVIIKRGNNMKQS---VGNPSVYCKLTLGNT----PPRQTKIVSTGPNPEWEESFAWSFEIPPK-GQKLHISCKNK 2049 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 2049 (2100)
.|.|+|+|.+..++... .|...-|+++.+..+ ..|+|||+.++.||+|||.|.|.+..... +..|++.|+++
T Consensus 14 ~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~ 93 (128)
T cd08392 14 TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHS 93 (128)
T ss_pred CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeC
Confidence 36799999999999654 266778888877533 37789999999999999999998653333 34999999999
Q ss_pred CccCCc-ccceEEEEEeeEE
Q 000133 2050 SKMGKS-SFGKVTIQIDRVV 2068 (2100)
Q Consensus 2050 ~~~~~~-~~~~~~~~~~~~~ 2068 (2100)
+.|+++ .+|.|.|++.++-
T Consensus 94 ~~~~~~~~lG~~~i~L~~~~ 113 (128)
T cd08392 94 RTLKRRVFLGEVLIPLADWD 113 (128)
T ss_pred CCCcCcceEEEEEEEcCCcc
Confidence 998665 5599999998873
No 99
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=98.61 E-value=5.3e-08 Score=102.14 Aligned_cols=102 Identities=22% Similarity=0.365 Sum_probs=82.6
Q ss_pred CCCceeeeeccchhhhh--hCCCcceEEEec--CCCCCccccccccCCCccccccceeccccCC-CCCeEEEEeecCCcc
Q 000133 1978 PGTLVVIIKRGNNMKQS--VGNPSVYCKLTL--GNTPPRQTKIVSTGPNPEWEESFAWSFEIPP-KGQKLHISCKNKSKM 2052 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 2052 (2100)
.|.|+|+|++..++... .|...-++++.+ ++...++|+|++++.+|+|+|.|.|.+...- .++.|.|+|++++.|
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~ 94 (124)
T cd08387 15 MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQF 94 (124)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCC
Confidence 37899999999999643 444667888887 4466789999999999999999999765222 356999999999999
Q ss_pred CCc-ccceEEEEEeeEEeecccccceee
Q 000133 2053 GKS-SFGKVTIQIDRVVMLGAVAGEYTL 2079 (2100)
Q Consensus 2053 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 2079 (2100)
|++ .+|++.|++.++...+....-|.|
T Consensus 95 ~~~~~iG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08387 95 SRDECIGVVELPLAEVDLSEKLDLWRKI 122 (124)
T ss_pred CCCceeEEEEEecccccCCCCcceEEEC
Confidence 866 569999999999877777766666
No 100
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=98.60 E-value=5.1e-08 Score=101.78 Aligned_cols=102 Identities=24% Similarity=0.354 Sum_probs=78.5
Q ss_pred CCceeeeeccchhhhhh--CCCcceEEEec--CCCCCccccccccCCCccccccceec-cccC-CCCCeEEEEeecCCcc
Q 000133 1979 GTLVVIIKRGNNMKQSV--GNPSVYCKLTL--GNTPPRQTKIVSTGPNPEWEESFAWS-FEIP-PKGQKLHISCKNKSKM 2052 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~ 2052 (2100)
+.|+|+|.+..++...- |...-+.++-+ ++...++|||++. .||+|||+|.|. +... ..+..|++.|++++.|
T Consensus 16 ~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~ 94 (124)
T cd08389 16 RKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERM 94 (124)
T ss_pred CEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCc
Confidence 56899999999997654 33444444333 3467889999987 999999999997 4422 2455899999999999
Q ss_pred CCcc-cceEEEEEeeEEeecccccceeecC
Q 000133 2053 GKSS-FGKVTIQIDRVVMLGAVAGEYTLLP 2081 (2100)
Q Consensus 2053 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 2081 (2100)
|++. +|++.|++.++-..+....-|.|.|
T Consensus 95 ~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p 124 (124)
T cd08389 95 RKERLIGEKVVPLSQLNLEGETTVWLTLEP 124 (124)
T ss_pred ccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence 8665 5999999999977777777777754
No 101
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=98.59 E-value=6e-08 Score=101.71 Aligned_cols=102 Identities=23% Similarity=0.360 Sum_probs=81.1
Q ss_pred CCCceeeeeccchhhhh---hCCCcceEEEecCCC----CCccccccccCCCccccccceeccccCC-CCCeEEEEeecC
Q 000133 1978 PGTLVVIIKRGNNMKQS---VGNPSVYCKLTLGNT----PPRQTKIVSTGPNPEWEESFAWSFEIPP-KGQKLHISCKNK 2049 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 2049 (2100)
.|.|+|+|++..++... .|....|+++.+..+ ..++|+|++++.+|+|||.|.|.+..+. .+..|.|+|+++
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~ 92 (123)
T cd08521 13 TGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHH 92 (123)
T ss_pred CCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeC
Confidence 58899999999999753 345667787766422 4578999999999999999998876332 256899999999
Q ss_pred CccCCc-ccceEEEEEeeEEeecccccceee
Q 000133 2050 SKMGKS-SFGKVTIQIDRVVMLGAVAGEYTL 2079 (2100)
Q Consensus 2050 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 2079 (2100)
+.||++ .+|++.|+++++...+...+-|.|
T Consensus 93 ~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 93 DRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred CCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 999876 459999999999777777766654
No 102
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.58 E-value=1e-07 Score=101.38 Aligned_cols=106 Identities=22% Similarity=0.424 Sum_probs=83.8
Q ss_pred Cceeeeeccchhhhh--hCCCcceEEEecCCC------CCccccccccCCCccccccceeccccCCCCCeEEEEeecCCc
Q 000133 1980 TLVVIIKRGNNMKQS--VGNPSVYCKLTLGNT------PPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSK 2051 (2100)
Q Consensus 1980 ~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2051 (2100)
+|+|+|.+..++... .|.+.-++++.+++. ...+|++++++.||+|||.|.|.+ ++.++.|.++|++++.
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~--~~~~~~l~~~v~d~~~ 78 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRV--NPREHRLLFEVFDENR 78 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEE--cCCCCEEEEEEEECCC
Confidence 489999999998654 455678888888754 246899999999999999998875 4557899999999999
Q ss_pred cCCc-ccceEEEEEeeEEeeccc------ccceeecCCCCCCC
Q 000133 2052 MGKS-SFGKVTIQIDRVVMLGAV------AGEYTLLPESKSGP 2087 (2100)
Q Consensus 2052 ~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 2087 (2100)
||++ .+|++.|+++.+...+.. ...|.|.+-++.|+
T Consensus 79 ~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 121 (133)
T cd04033 79 LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSR 121 (133)
T ss_pred CCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCc
Confidence 9865 559999999999986553 36788875443443
No 103
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.58 E-value=3.8e-06 Score=104.61 Aligned_cols=244 Identities=19% Similarity=0.058 Sum_probs=183.4
Q ss_pred cCcHHHHHHHHh-cCCHHHHHHHHHHHHHhhcchhhhhhhhhcCChHHHHHhhccCChhhHHHHHHHHHHhhcCCchhhH
Q 000133 1230 FAAVSQLVAVLR-LGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRAL 1308 (2100)
Q Consensus 1230 ~~al~~Li~~L~-~~~~~~r~~Aa~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~La~~~~~~~~ 1308 (2100)
+.+++.|+..|. +++...+..++.+|... ....++..|+..|.+.++.++..++.+|+.+.
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~----------~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~-------- 114 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQ----------EDALDLRSVLAVLQAGPEGLCAGIQAALGWLG-------- 114 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhcc----------CChHHHHHHHHHhcCCCHHHHHHHHHHHhcCC--------
Confidence 568999999996 45556666666555432 11224899999999988889999999999876
Q ss_pred HHHhhhcchhHHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHhhcChHHHHHHHhcCCchHHHHHHHHHHHhccc
Q 000133 1309 AVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDD 1388 (2100)
Q Consensus 1309 ~~~~v~~gal~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~~~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~ 1388 (2100)
...+.+.|+.+|.+. +..++..+..++... .....+.++.+|++.++.++..|+++|..+.
T Consensus 115 -----~~~a~~~L~~~L~~~-~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~-- 175 (410)
T TIGR02270 115 -----GRQAEPWLEPLLAAS-EPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDALVRAAALRALGELP-- 175 (410)
T ss_pred -----chHHHHHHHHHhcCC-ChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhc--
Confidence 456788899999764 677888887777652 2234678999999999999999999999986
Q ss_pred HHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCchhhHHHHhcCcHHHHHHHhccCChhHHHHHHHHHHHH
Q 000133 1389 EQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRIL 1468 (2100)
Q Consensus 1389 ~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k~~i~~~~~i~~lv~~L~~~~~~~~~~aa~lL~~L 1468 (2100)
...+++.|...+.+.++.||+.|+.+|..++... ++..+..+...........++.+ +
T Consensus 176 --------~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~~~-----------A~~~l~~~~~~~g~~~~~~l~~~---l 233 (410)
T TIGR02270 176 --------RRLSESTLRLYLRDSDPEVRFAALEAGLLAGSRL-----------AWGVCRRFQVLEGGPHRQRLLVL---L 233 (410)
T ss_pred --------cccchHHHHHHHcCCCHHHHHHHHHHHHHcCCHh-----------HHHHHHHHHhccCccHHHHHHHH---H
Confidence 3356788999999999999999999999997654 56677764544333333333322 2
Q ss_pred HhccCCcccccccCchHHHHHHhccCCCCchhHhHHHHHHHHhhcCCCcccccccccCCChHhhhhccCCCCHHHHHHHH
Q 000133 1469 TNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAA 1548 (2100)
Q Consensus 1469 s~~~~~~~~~~~~~~v~~Ll~ll~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~~~~~~~~l~~Lv~~L~~~~~~vq~~a~ 1548 (2100)
+..... ..+..|..++.. +.++..+..+|+.+ .....+++|+..+.+.. ++..|.
T Consensus 234 al~~~~-------~a~~~L~~ll~d----~~vr~~a~~AlG~l------------g~p~av~~L~~~l~d~~--~aR~A~ 288 (410)
T TIGR02270 234 AVAGGP-------DAQAWLRELLQA----AATRREALRAVGLV------------GDVEAAPWCLEAMREPP--WARLAG 288 (410)
T ss_pred HhCCch-------hHHHHHHHHhcC----hhhHHHHHHHHHHc------------CCcchHHHHHHHhcCcH--HHHHHH
Confidence 222221 368888888874 34888899999884 77789999999997655 999999
Q ss_pred HHHHHhhcc
Q 000133 1549 ELLSHLLLE 1557 (2100)
Q Consensus 1549 ~aL~~l~~~ 1557 (2100)
+++..|+.-
T Consensus 289 eA~~~ItG~ 297 (410)
T TIGR02270 289 EAFSLITGM 297 (410)
T ss_pred HHHHHhhCC
Confidence 999999874
No 104
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=98.57 E-value=8e-08 Score=98.51 Aligned_cols=96 Identities=17% Similarity=0.240 Sum_probs=79.9
Q ss_pred ceeeeeccchhhhhhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCC---CCCeEEEEeecCCccCC-cc
Q 000133 1981 LVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPP---KGQKLHISCKNKSKMGK-SS 2056 (2100)
Q Consensus 1981 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~ 2056 (2100)
|.|+|.+..++. .|...-++++++|+ ..++|++++++.||.|+|.|.|.+..|+ .++.|.|.|+++++||+ +.
T Consensus 6 l~V~v~~a~~L~--~~~~dpyv~v~~~~-~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~ 82 (111)
T cd04011 6 VRVRVIEARQLV--GGNIDPVVKVEVGG-QKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDTL 82 (111)
T ss_pred EEEEEEEcccCC--CCCCCCEEEEEECC-EeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccCCc
Confidence 688999999998 56677899999985 5788999999999999999999987666 35799999999999987 55
Q ss_pred cceEEEEEeeEEee---cccccceee
Q 000133 2057 FGKVTIQIDRVVML---GAVAGEYTL 2079 (2100)
Q Consensus 2057 ~~~~~~~~~~~~~~---~~~~~~~~~ 2079 (2100)
+|+++|.+..+... +.+..-|.|
T Consensus 83 iG~~~i~l~~v~~~~~~~~~~~w~~L 108 (111)
T cd04011 83 IGSFKLDVGTVYDQPDHAFLRKWLLL 108 (111)
T ss_pred cEEEEECCccccCCCCCcceEEEEEe
Confidence 69999999998764 334445555
No 105
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=98.56 E-value=8.7e-08 Score=100.75 Aligned_cols=102 Identities=18% Similarity=0.277 Sum_probs=80.3
Q ss_pred CCceeeeeccchhhhh--hCCCcceEEEecC--CCCCccccccccCCCccccccceeccc--cCCCCCeEEEEeecCCcc
Q 000133 1979 GTLVVIIKRGNNMKQS--VGNPSVYCKLTLG--NTPPRQTKIVSTGPNPEWEESFAWSFE--IPPKGQKLHISCKNKSKM 2052 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 2052 (2100)
+.|+|+|++..++... .|...-++.+.+. ++..++|+|++++.||+|||.|.|... .....+.|.++|++++.|
T Consensus 16 ~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~ 95 (125)
T cd08386 16 STLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRF 95 (125)
T ss_pred CEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCC
Confidence 5789999999999653 4556678888773 566789999999999999999998632 113456899999999999
Q ss_pred CCcc-cceEEEEEeeEEeecccccceeec
Q 000133 2053 GKSS-FGKVTIQIDRVVMLGAVAGEYTLL 2080 (2100)
Q Consensus 2053 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 2080 (2100)
|++. +|++.|.+.++-..+..+.-|.|.
T Consensus 96 ~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 96 SRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred cCCcEeeEEEEecccccCCCCcceEEecC
Confidence 8765 699999999987766655555553
No 106
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=4.1e-05 Score=95.96 Aligned_cols=370 Identities=18% Similarity=0.185 Sum_probs=251.3
Q ss_pred chHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHh
Q 000133 227 DATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANI 306 (2100)
Q Consensus 227 g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl 306 (2100)
..|+.|+.-+.++.-.+-|+.|+..|..+++ ..|.. +.+-|+++++..|+.. ..+++...++..++.++
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~-Vga~Gmk~li~vL~~D-------~~D~E~ik~~LdTl~il 90 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREE-VGAQGMKPLIQVLQRD-------YMDPEIIKYALDTLLIL 90 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHH-HHHcccHHHHHHHhhc-------cCCHHHHHHHHHHHHHH
Confidence 3477777777776667889999999999987 45444 4556899999999653 45688899999999988
Q ss_pred hCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 000133 307 SGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASL 386 (2100)
Q Consensus 307 ~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L 386 (2100)
....+. | ..+.+ + +.+...=.+-++.
T Consensus 91 ~~~dd~-----------~---~v~dd-----------------------s-------------~qsdd~g~~iae~---- 116 (970)
T KOG0946|consen 91 TSHDDS-----------P---EVMDD-----------------------S-------------TQSDDLGLWIAEQ---- 116 (970)
T ss_pred HhcCcc-----------h---hhccc-----------------------c-------------hhhhHHHHHHHHH----
Confidence 764220 0 00000 0 0000001111111
Q ss_pred hCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCc-cchHHHHhC-CcHHHHHHhhCCCCHHHHHHHHH
Q 000133 387 YGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEG-SLWRALQGR-EGIQLLISLLGLSSEQQQECSVA 464 (2100)
Q Consensus 387 ~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~-~~~~~i~~~-g~i~~Lv~lL~s~~~~v~~~A~~ 464 (2100)
.+...+-+..++..+...|..||..++..|.++-...+ ..+.++... -||..|+.+|.+..+.+|..+..
T Consensus 117 --------fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iL 188 (970)
T KOG0946|consen 117 --------FIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAIL 188 (970)
T ss_pred --------HHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHH
Confidence 23345667788888888899999999999999766554 455666544 57999999999999999999999
Q ss_pred HHHHhccCCcccHHHHHhcCChHHHHHhccCC----CHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhc---
Q 000133 465 LLCLLSNENDDSKWAITAAGGIPPLVQILESG----SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKN--- 537 (2100)
Q Consensus 465 aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~----~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~--- 537 (2100)
.|+.|+++++..+..+.=.++...|..+++.. ..-+.+.|...|.||-..+..++..|.+.+-+|.|..+|..
T Consensus 189 lL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~ 268 (970)
T KOG0946|consen 189 LLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEF 268 (970)
T ss_pred HHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccc
Confidence 99999998888888888888999999999754 23578899999999999888999999999999999988864
Q ss_pred CC-----hhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHH
Q 000133 538 GS-----ANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIK 612 (2100)
Q Consensus 538 ~~-----~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~ 612 (2100)
++ |..++.+. ....| +++..+-+...... ...-.++.+...+++..|..
T Consensus 269 ~d~Ev~~W~~Qrv~N-v~~~L----------qivr~lVsP~Nt~~---------------~~~q~qk~l~ss~ll~~Lc~ 322 (970)
T KOG0946|consen 269 GDGEVFGWSTQRVQN-VIEAL----------QIVRSLVSPGNTSS---------------ITHQNQKALVSSHLLDVLCT 322 (970)
T ss_pred cCcccccccHHHHHH-HHHHH----------HHHHHhcCCCCcHH---------------HHHHHHHHHHHcchHHHHHH
Confidence 22 22222111 11000 11111111111100 00113445666778899999
Q ss_pred HhcCC--CHHHHHHHHHHHHHHhcCChhhHHHHHhcC------chHHHHHhh-----cCCCHHHHHHHHHHHHHHhcCCc
Q 000133 613 ILSST--KEETQAKSASALAGIFETRKDLRESSIAVK------TLWSVMKLL-----DVGSECILVEASRCLAAIFLSVR 679 (2100)
Q Consensus 613 lL~s~--~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g------~v~~Lv~lL-----~~~~~~v~~~aa~aL~~L~~~~~ 679 (2100)
++.++ ..+++..+.-++++..+++..+++.+.... -.|.++-++ .......+-+++.++.+....+.
T Consensus 323 il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~ 402 (970)
T KOG0946|consen 323 ILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDND 402 (970)
T ss_pred HHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcch
Confidence 77665 567999999999999999888888876543 123333332 33455788888999999887765
Q ss_pred hhHHHHHHhCCChHHHHHHhCC
Q 000133 680 ENREVAAVARDALSPLVVLAGS 701 (2100)
Q Consensus 680 ~~~~~~~~~~~~l~~Lv~ll~~ 701 (2100)
+.++. ++..+++.-.+
T Consensus 403 ~gq~~------~l~tllp~~~n 418 (970)
T KOG0946|consen 403 DGQRK------FLKTLLPSSTN 418 (970)
T ss_pred hhHHH------HHHHHhhhhcc
Confidence 54443 45666655443
No 107
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=98.55 E-value=8.8e-08 Score=100.52 Aligned_cols=102 Identities=20% Similarity=0.230 Sum_probs=79.6
Q ss_pred CCCceeeeeccchhhh--hhCCCcceEEEecCC--CCCccccccccCCCccccccceeccccCC-CCCeEEEEeecCCcc
Q 000133 1978 PGTLVVIIKRGNNMKQ--SVGNPSVYCKLTLGN--TPPRQTKIVSTGPNPEWEESFAWSFEIPP-KGQKLHISCKNKSKM 2052 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 2052 (2100)
.|.|+|+|.+..++.. ..|....|+++.+.+ ...++|++++++.||+|||.|.|....+. .+..|.++|++++.|
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~ 94 (124)
T cd08385 15 SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRF 94 (124)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCC
Confidence 3789999999999864 345566777777653 34668999999999999999999875332 356899999999999
Q ss_pred CCc-ccceEEEEEeeEEeecccccceee
Q 000133 2053 GKS-SFGKVTIQIDRVVMLGAVAGEYTL 2079 (2100)
Q Consensus 2053 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 2079 (2100)
|++ .+|++.|.++.+........-|.|
T Consensus 95 ~~~~~lG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08385 95 SKHDLIGEVRVPLLTVDLGHVTEEWRDL 122 (124)
T ss_pred CCCceeEEEEEecCcccCCCCcceEEEc
Confidence 765 569999999998765555555554
No 108
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=98.54 E-value=1.7e-07 Score=100.78 Aligned_cols=102 Identities=20% Similarity=0.325 Sum_probs=82.4
Q ss_pred Cceeeeeccchhh--hhhCCCcceEEEecCCCCCcccccccc-CCCccccccceeccccCCCCCeEEEEeecCCcc-CCc
Q 000133 1980 TLVVIIKRGNNMK--QSVGNPSVYCKLTLGNTPPRQTKIVST-GPNPEWEESFAWSFEIPPKGQKLHISCKNKSKM-GKS 2055 (2100)
Q Consensus 1980 ~~~~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 2055 (2100)
.|.|+|.+..++. ..+|.+.-|+.+.+|+ ...+||++++ +.||+|||.|+|... .|..+.+.|.|+++..+ +++
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~-~~~kTk~~~~~t~nP~WNE~F~f~v~-~~~~~~l~v~V~d~~~~~~dd 78 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGN-QVLRTRPSQTRNGNPSWNEELMFVAA-EPFEDHLILSVEDRVGPNKDE 78 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECC-EEeeeEeccCCCCCCcccCcEEEEec-CccCCeEEEEEEEecCCCCCC
Confidence 3789999999993 4456677899999986 6678999876 699999999999886 45678999999998887 456
Q ss_pred ccceEEEEEeeEEee----cccccceeecCCC
Q 000133 2056 SFGKVTIQIDRVVML----GAVAGEYTLLPES 2083 (2100)
Q Consensus 2056 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 2083 (2100)
.+|+|.|.+.++... .....-|.|...+
T Consensus 79 ~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~ 110 (150)
T cd04019 79 PLGRAVIPLNDIERRVDDRPVPSRWFSLERPG 110 (150)
T ss_pred eEEEEEEEHHHCcccCCCCccCCceEECcCCC
Confidence 679999999997542 3467789997664
No 109
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=98.52 E-value=1.2e-07 Score=99.43 Aligned_cols=103 Identities=17% Similarity=0.269 Sum_probs=81.4
Q ss_pred CCCceeeeeccchhhhh---hCCCcceEEEecC--CCCCccccccccCCCccccccceeccccCCCC-CeEEEEeecCCc
Q 000133 1978 PGTLVVIIKRGNNMKQS---VGNPSVYCKLTLG--NTPPRQTKIVSTGPNPEWEESFAWSFEIPPKG-QKLHISCKNKSK 2051 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 2051 (2100)
.|.|+|+|++..++... .|...-++++.+. +...++|++++++.+|+|||.|+|.+...... ..|.|+|++++.
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~ 92 (123)
T cd08390 13 EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDR 92 (123)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCc
Confidence 36799999999999764 4455667777763 45667899999999999999999987644333 489999999999
Q ss_pred cCC-cccceEEEEEeeEEeecccccceeec
Q 000133 2052 MGK-SSFGKVTIQIDRVVMLGAVAGEYTLL 2080 (2100)
Q Consensus 2052 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 2080 (2100)
+|+ ..+|++.|.++.+...+....-|.|.
T Consensus 93 ~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 93 FSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred CCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 875 55699999999999877666666653
No 110
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=98.51 E-value=1.3e-07 Score=100.27 Aligned_cols=108 Identities=22% Similarity=0.434 Sum_probs=86.5
Q ss_pred CCCceeeeeccchhhhh--hCCCcceEEEecCC----CCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCc
Q 000133 1978 PGTLVVIIKRGNNMKQS--VGNPSVYCKLTLGN----TPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSK 2051 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2051 (2100)
+|.|+|+|++..++... .|...-++.+.+++ ....+|+++.++.+|.|+|.|.|.+..+...+.+.+.|+++..
T Consensus 12 ~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~ 91 (131)
T cd04026 12 DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDR 91 (131)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCC
Confidence 47899999999999763 34455677777653 4567899999999999999999998755567899999999999
Q ss_pred cCCcc-cceEEEEEeeEEeecccccceeecCCCCCCC
Q 000133 2052 MGKSS-FGKVTIQIDRVVMLGAVAGEYTLLPESKSGP 2087 (2100)
Q Consensus 2052 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2087 (2100)
+|++. +|++.|.++++... ...+-|.| .+.+.|.
T Consensus 92 ~~~~~~iG~~~~~l~~l~~~-~~~~w~~L-~~~~~~~ 126 (131)
T cd04026 92 TTRNDFMGSLSFGVSELIKM-PVDGWYKL-LNQEEGE 126 (131)
T ss_pred CCCcceeEEEEEeHHHhCcC-ccCceEEC-cCccccc
Confidence 87655 59999999999754 67788888 5555664
No 111
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=98.51 E-value=1.9e-07 Score=98.31 Aligned_cols=112 Identities=20% Similarity=0.262 Sum_probs=83.6
Q ss_pred Cceeeeeccchhhhh--hCCCcceEEEecCCC--CCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCc
Q 000133 1980 TLVVIIKRGNNMKQS--VGNPSVYCKLTLGNT--PPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKS 2055 (2100)
Q Consensus 1980 ~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2055 (2100)
.|+|+|++..++... .|....++.+..+++ ...+|++++++.+|.|+|.|.|.+.. +..+.|.|+|++++.+|++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~-~~~~~L~i~v~d~d~~~~~ 80 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPA-GEPLWISATVWDRSFVGKH 80 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCC-CCCCEEEEEEEECCCCCCC
Confidence 379999999999754 344557888877654 45799999999999999999999874 3567999999999999766
Q ss_pred c-cceEEEEEeeEEeec---ccccceeecCCCCCCCCcceEEEEEec
Q 000133 2056 S-FGKVTIQIDRVVMLG---AVAGEYTLLPESKSGPSRNLEIEFLWS 2098 (2100)
Q Consensus 2056 ~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2098 (2100)
. +|+++|+++.+.... ...-.|.|.+ .|+ +.+.+.|.
T Consensus 81 ~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~---~g~---i~l~~~~~ 121 (126)
T cd04043 81 DLCGRASLKLDPKRFGDDGLPREIWLDLDT---QGR---LLLRVSME 121 (126)
T ss_pred ceEEEEEEecCHHHcCCCCCCceEEEEcCC---CCe---EEEEEEEe
Confidence 5 599999998765432 2233456643 454 34666654
No 112
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=98.50 E-value=1.2e-07 Score=95.56 Aligned_cols=87 Identities=17% Similarity=0.330 Sum_probs=71.3
Q ss_pred CCCceeeeeccchhhhhhCCCcceEEEecCC---CCCccccccccCCCccccccceeccccCCC---CCeEEEEeecCCc
Q 000133 1978 PGTLVVIIKRGNNMKQSVGNPSVYCKLTLGN---TPPRQTKIVSTGPNPEWEESFAWSFEIPPK---GQKLHISCKNKSK 2051 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 2051 (2100)
-|.|+|+|++..+++ ..|.+.-+.++.+.. ...+||+|.++..||+|||.|.|.+ |+. +..|++.|++.+.
T Consensus 13 ~~~L~V~vikA~~L~-~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v--~~~~l~~~tL~~~V~d~Dr 89 (118)
T cd08677 13 KAELHVNILEAENIS-VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPL--PEEESLDGTLTLTLRCCDR 89 (118)
T ss_pred CCEEEEEEEEecCCC-CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeC--CHHHhCCcEEEEEEEeCCC
Confidence 378999999999999 456666777777753 2578899999999999999999864 432 2269999999999
Q ss_pred cCCcc-cceEEEEEeeE
Q 000133 2052 MGKSS-FGKVTIQIDRV 2067 (2100)
Q Consensus 2052 ~~~~~-~~~~~~~~~~~ 2067 (2100)
||+.. +|+|.+.+..|
T Consensus 90 fs~~d~IG~v~l~l~~~ 106 (118)
T cd08677 90 FSRHSTLGELRLKLADV 106 (118)
T ss_pred CCCCceEEEEEEccccc
Confidence 98877 59999999886
No 113
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=98.50 E-value=2.1e-07 Score=97.83 Aligned_cols=91 Identities=23% Similarity=0.386 Sum_probs=73.2
Q ss_pred CCCceeeeeccchhhhh--hCCCcceEEEecCC----CCCccccccccCCCccccccceeccccC--CCCCeEEEEeecC
Q 000133 1978 PGTLVVIIKRGNNMKQS--VGNPSVYCKLTLGN----TPPRQTKIVSTGPNPEWEESFAWSFEIP--PKGQKLHISCKNK 2049 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 2049 (2100)
+|.|+|+|.+..++... .|.+..|+++.+++ ...++|+|+.++.||.|||.|.|..-.+ .....|.++|+++
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~ 94 (125)
T cd04031 15 TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDY 94 (125)
T ss_pred CCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeC
Confidence 57899999999998653 34466788887764 3578899999999999999999975322 2467999999999
Q ss_pred CccCCc-ccceEEEEEeeEE
Q 000133 2050 SKMGKS-SFGKVTIQIDRVV 2068 (2100)
Q Consensus 2050 ~~~~~~-~~~~~~~~~~~~~ 2068 (2100)
+.|+++ .+|++.|++++..
T Consensus 95 ~~~~~~~~iG~~~i~l~~~~ 114 (125)
T cd04031 95 DRDGENDFLGEVVIDLADAL 114 (125)
T ss_pred CCCCCCcEeeEEEEeccccc
Confidence 999764 5699999999833
No 114
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=0.0021 Score=82.01 Aligned_cols=94 Identities=16% Similarity=0.100 Sum_probs=63.3
Q ss_pred chHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHh
Q 000133 157 NVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLL 236 (2100)
Q Consensus 157 ~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL 236 (2100)
..+...|+.+|+++++. +-. + ...|.+.++|++.++.+|..|+.+..++....++..+.+ ++...++|
T Consensus 121 q~vVglAL~alg~i~s~-Ema-r-----dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f-----~~~~~~lL 188 (866)
T KOG1062|consen 121 QYVVGLALCALGNICSP-EMA-R-----DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHF-----VIAFRKLL 188 (866)
T ss_pred eeehHHHHHHhhccCCH-HHh-H-----HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHh-----hHHHHHHH
Confidence 34677888889998742 222 2 246788889999999999999999988887776443333 55666666
Q ss_pred cCCCCHHHHHHHHHHHHHhhcCChHhH
Q 000133 237 GSGNEASVRAEAAGALKSLSDHCKDAR 263 (2100)
Q Consensus 237 ~~~~~~~v~~~Aa~aL~~Ls~~~~~~~ 263 (2100)
...+. .+-..+...+..++..+++.-
T Consensus 189 ~ek~h-GVL~~~l~l~~e~c~~~~~~l 214 (866)
T KOG1062|consen 189 CEKHH-GVLIAGLHLITELCKISPDAL 214 (866)
T ss_pred hhcCC-ceeeeHHHHHHHHHhcCHHHH
Confidence 65442 455666666666666555443
No 115
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=98.48 E-value=2.4e-07 Score=96.18 Aligned_cols=101 Identities=21% Similarity=0.321 Sum_probs=80.2
Q ss_pred CceeeeeccchhhhhhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCC-CeEEEEeecCCccCCcccc
Q 000133 1980 TLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKG-QKLHISCKNKSKMGKSSFG 2058 (2100)
Q Consensus 1980 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 2058 (2100)
.|+|+|.+..++... |....++.+.+++...++||++++ .+|.|+|.|.|.....-.+ ..+.|.++++..+++. .|
T Consensus 1 ~L~v~vi~a~~l~~~-~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~-~~ 77 (117)
T cd08383 1 SLRLRILEAKNLPSK-GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRD-IV 77 (117)
T ss_pred CeEEEEEEecCCCcC-CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCe-eE
Confidence 378999999999988 888899999998766789999999 9999999998866422112 3788888998877543 46
Q ss_pred eEEEEEeeEEeecccccceeecCCC
Q 000133 2059 KVTIQIDRVVMLGAVAGEYTLLPES 2083 (2100)
Q Consensus 2059 ~~~~~~~~~~~~~~~~~~~~~~~~~ 2083 (2100)
..+|+|+..-..+.....|.|.+.+
T Consensus 78 ~g~v~l~~~~~~~~~~~w~~L~~~~ 102 (117)
T cd08383 78 IGKVALSKLDLGQGKDEWFPLTPVD 102 (117)
T ss_pred EEEEEecCcCCCCcceeEEECccCC
Confidence 6667777777788888999997753
No 116
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=98.48 E-value=2e-07 Score=97.14 Aligned_cols=100 Identities=26% Similarity=0.409 Sum_probs=80.0
Q ss_pred CCceeeeeccchhhh--hhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCcc
Q 000133 1979 GTLVVIIKRGNNMKQ--SVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKSS 2056 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2056 (2100)
|.|.|+|++..++.. ..|...-++.+.+++. ..+|++++++.||.|+|.|.+.+. ..++.++++|+++..+|++.
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~~~~~--~~~~~l~~~v~d~~~~~~~~ 77 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNA-RLQTHTIYKTLNPEWNKIFTFPIK--DIHDVLEVTVYDEDKDKKPE 77 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCE-eeecceecCCcCCccCcEEEEEec--CcCCEEEEEEEECCCCCCCc
Confidence 789999999999864 3344667888888643 468999999999999999988764 34789999999999987655
Q ss_pred -cceEEEEEeeEEeecccccceeecCCC
Q 000133 2057 -FGKVTIQIDRVVMLGAVAGEYTLLPES 2083 (2100)
Q Consensus 2057 -~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2083 (2100)
+|++.++++++.. | ....|.|.+..
T Consensus 78 ~iG~~~~~l~~~~~-~-~~~~~~l~~~~ 103 (119)
T cd08377 78 FLGKVAIPLLSIKN-G-ERKWYALKDKK 103 (119)
T ss_pred eeeEEEEEHHHCCC-C-CceEEECcccC
Confidence 6999999999753 3 35688886553
No 117
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.48 E-value=1.5e-07 Score=100.66 Aligned_cols=92 Identities=18% Similarity=0.411 Sum_probs=76.5
Q ss_pred Cceeeeeccchhhhh----------------hCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEE
Q 000133 1980 TLVVIIKRGNNMKQS----------------VGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLH 2043 (2100)
Q Consensus 1980 ~~~~~~~r~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2043 (2100)
.|.|||+|.+++... .|...-++++.+|+. +.+|+|++++.||+|||.|.+....|+..+.+.
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~-~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~ 79 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQ-KVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIK 79 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCE-eeecceEcCCCCCCcceEEEEEeeCCCcCCEEE
Confidence 378999999887652 234567889999764 568999999999999999999987788889999
Q ss_pred EEeecCCccCCcc-cceEEEEEeeEEeecc
Q 000133 2044 ISCKNKSKMGKSS-FGKVTIQIDRVVMLGA 2072 (2100)
Q Consensus 2044 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 2072 (2100)
|+|+|++.+|++. +|++.|++.++...|.
T Consensus 80 ~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~ 109 (151)
T cd04018 80 IQIRDWDRVGNDDVIGTHFIDLSKISNSGD 109 (151)
T ss_pred EEEEECCCCCCCCEEEEEEEeHHHhccCCc
Confidence 9999999996655 6999999999887653
No 118
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=98.47 E-value=3.1e-07 Score=95.62 Aligned_cols=101 Identities=20% Similarity=0.351 Sum_probs=82.6
Q ss_pred Cceeeeeccchhh--hhhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCc-c
Q 000133 1980 TLVVIIKRGNNMK--QSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKS-S 2056 (2100)
Q Consensus 1980 ~~~~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 2056 (2100)
.|.|+|.+..++. ..+|...-++.+.+++....+|+++.++.||+|+|.|.|.+. +..+.+.+.|++++.+|++ .
T Consensus 1 ~l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~--~~~~~l~v~v~d~~~~~~d~~ 78 (121)
T cd04054 1 SLYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLP--PGFHTVSFYVLDEDTLSRDDV 78 (121)
T ss_pred CEEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeC--CCCCEEEEEEEECCCCCCCCE
Confidence 4789999999886 445667789999997655679999999999999999999763 4457999999999999984 5
Q ss_pred cceEEEEEeeEEee-cccccceeecCC
Q 000133 2057 FGKVTIQIDRVVML-GAVAGEYTLLPE 2082 (2100)
Q Consensus 2057 ~~~~~~~~~~~~~~-~~~~~~~~~~~~ 2082 (2100)
+|++.|+++..... +....-|.|.+-
T Consensus 79 iG~~~~~~~~~~~~~~~~~~W~~L~~~ 105 (121)
T cd04054 79 IGKVSLTREVISAHPRGIDGWMNLTEV 105 (121)
T ss_pred EEEEEEcHHHhccCCCCCCcEEECeee
Confidence 59999999888654 346778888764
No 119
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=98.47 E-value=1.5e-07 Score=99.77 Aligned_cols=95 Identities=19% Similarity=0.283 Sum_probs=77.0
Q ss_pred CCceeeeeccchhhhh--hCCCcceEEEecCC------CCCccccccccCCCccccccceeccccCC---CCCeEEEEee
Q 000133 1979 GTLVVIIKRGNNMKQS--VGNPSVYCKLTLGN------TPPRQTKIVSTGPNPEWEESFAWSFEIPP---KGQKLHISCK 2047 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 2047 (2100)
+.|+|+|++..++... .|...-++++.++. ...++|+|++++.||+|||.|.|.+.... .+..++|+|+
T Consensus 16 ~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~ 95 (133)
T cd04009 16 QSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVK 95 (133)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEE
Confidence 5689999999999753 35566778887762 45789999999999999999999987532 4569999999
Q ss_pred cCCccCC-cccceEEEEEeeEEeeccc
Q 000133 2048 NKSKMGK-SSFGKVTIQIDRVVMLGAV 2073 (2100)
Q Consensus 2048 ~~~~~~~-~~~~~~~~~~~~~~~~~~~ 2073 (2100)
+++.||+ +.+|++.|.++++...++-
T Consensus 96 d~d~~~~d~~iG~~~i~l~~l~~~~~~ 122 (133)
T cd04009 96 DYDLLGSNDFEGEAFLPLNDIPGVEDT 122 (133)
T ss_pred ecCCCCCCcEeEEEEEeHHHCCccccc
Confidence 9999985 5559999999998865543
No 120
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=98.47 E-value=2.1e-07 Score=101.69 Aligned_cols=104 Identities=19% Similarity=0.295 Sum_probs=81.6
Q ss_pred cCCCceeeeeccchhhhhh--CCCcceEEEecC----CCCCccccccccCCCccccccceeccccC--CCCCeEEEEeec
Q 000133 1977 LPGTLVVIIKRGNNMKQSV--GNPSVYCKLTLG----NTPPRQTKIVSTGPNPEWEESFAWSFEIP--PKGQKLHISCKN 2048 (2100)
Q Consensus 1977 i~~~~~~~~~r~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 2048 (2100)
-.|.|+|+|.+..++...- |.+.-|+++.+. ....++|+|+.++.||.|||.|.|..-.+ -.+..|.|+|+|
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d 104 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD 104 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence 3589999999999996543 456678877663 23567899999999999999999864322 234589999999
Q ss_pred CCccCC-cccceEEEEEeeEEeecccccceeec
Q 000133 2049 KSKMGK-SSFGKVTIQIDRVVMLGAVAGEYTLL 2080 (2100)
Q Consensus 2049 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 2080 (2100)
++.||+ +.+|+|.|.+..+...|.-..-|.|.
T Consensus 105 ~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~ 137 (162)
T cd04020 105 HDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDST 137 (162)
T ss_pred CCCCCCCceEEEEEEeCCccccCCCccccccCC
Confidence 999985 55699999999998888777767664
No 121
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=98.45 E-value=3.6e-07 Score=94.54 Aligned_cols=103 Identities=19% Similarity=0.246 Sum_probs=83.0
Q ss_pred ceeeeeccchhhhh--hCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCc-cc
Q 000133 1981 LVVIIKRGNNMKQS--VGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKS-SF 2057 (2100)
Q Consensus 1981 ~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 2057 (2100)
|+|+|....++... .|...-++.+.+++....+|+++.++.+|.|+|.|.|.... +..+.+.++|++++.||++ .+
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~-~~~~~l~~~v~d~~~~~~~~~i 79 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPS-RVRAVLKVEVYDWDRGGKDDLL 79 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEecc-CCCCEEEEEEEeCCCCCCCCce
Confidence 57888888877543 34466788888866566799999999999999999999763 3678999999999999866 55
Q ss_pred ceEEEEEeeEEeecccccceeecCCCC
Q 000133 2058 GKVTIQIDRVVMLGAVAGEYTLLPESK 2084 (2100)
Q Consensus 2058 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2084 (2100)
|++.+.++++...+.+...+.|.+.++
T Consensus 80 G~~~~~l~~l~~~~~~~~~~~L~~~g~ 106 (115)
T cd04040 80 GSAYIDLSDLEPEETTELTLPLDGQGG 106 (115)
T ss_pred EEEEEEHHHcCCCCcEEEEEECcCCCC
Confidence 999999999988777777777765544
No 122
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=98.44 E-value=2e-07 Score=96.50 Aligned_cols=101 Identities=17% Similarity=0.232 Sum_probs=75.0
Q ss_pred CCceeeeeccchhhhhh--CCCcceEEEec--CC---CCCccccccccCCCccccccceeccccCC-CCCeEEEEeecCC
Q 000133 1979 GTLVVIIKRGNNMKQSV--GNPSVYCKLTL--GN---TPPRQTKIVSTGPNPEWEESFAWSFEIPP-KGQKLHISCKNKS 2050 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~~--~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 2050 (2100)
|.|+|+|.|..|++..- |.+.-+.++.+ ++ ...++|+|+.++.||+|||.|.|.+...- .+-.|++.|++++
T Consensus 14 ~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~ 93 (124)
T cd08680 14 SSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVG 93 (124)
T ss_pred CEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCC
Confidence 67999999999997653 33555555443 23 24789999999999999999998754222 3449999999999
Q ss_pred ccCCcc-cceEEEEEeeEEee-cccccceee
Q 000133 2051 KMGKSS-FGKVTIQIDRVVML-GAVAGEYTL 2079 (2100)
Q Consensus 2051 ~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~ 2079 (2100)
.||++- +|.|.|.+.++-.. +.+..-|.|
T Consensus 94 ~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 94 PDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred CCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 997655 69999999998443 335555543
No 123
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=98.44 E-value=3.8e-07 Score=95.72 Aligned_cols=97 Identities=11% Similarity=0.151 Sum_probs=80.8
Q ss_pred CCceeeeeccchhhhh--hCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCcc
Q 000133 1979 GTLVVIIKRGNNMKQS--VGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKSS 2056 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2056 (2100)
++++|+|.+..++... .|...-|+.+..|+. ...|+|++++.+|+|+|.|.|.+.. .++.|.|+|+|++.++.+.
T Consensus 3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~-~~kT~v~~~t~nP~Wne~f~f~~~~--~~~~l~i~V~d~~~~~d~~ 79 (126)
T cd04046 3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGE-SVRSPVQKDTLSPEFDTQAIFYRKK--PRSPIKIQVWNSNLLCDEF 79 (126)
T ss_pred EEEEEEEEeCcCCCCCCCCCCcCccEEEEECCE-EEEeCccCCCCCCcccceEEEEecC--CCCEEEEEEEECCCCCCCc
Confidence 4789999999988753 566778999998754 6789999999999999999997753 3779999999999999999
Q ss_pred cceEEEEEeeEEeecccccceeec
Q 000133 2057 FGKVTIQIDRVVMLGAVAGEYTLL 2080 (2100)
Q Consensus 2057 ~~~~~~~~~~~~~~~~~~~~~~~~ 2080 (2100)
+|++.+.++.. . +.....|.|.
T Consensus 80 lG~~~~~l~~~-~-~~~~~~~~l~ 101 (126)
T cd04046 80 LGQATLSADPN-D-SQTLRTLPLR 101 (126)
T ss_pred eEEEEEecccC-C-CcCceEEEcc
Confidence 99999999864 3 4445668884
No 124
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=98.43 E-value=5.9e-07 Score=95.95 Aligned_cols=115 Identities=15% Similarity=0.262 Sum_probs=81.1
Q ss_pred ceeeeeccchhhhhhCC--CcceEEEec----CCCCCccccccccCCCccccccceeccccC-------CCCCeEEEEee
Q 000133 1981 LVVIIKRGNNMKQSVGN--PSVYCKLTL----GNTPPRQTKIVSTGPNPEWEESFAWSFEIP-------PKGQKLHISCK 2047 (2100)
Q Consensus 1981 ~~~~~~r~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 2047 (2100)
|+|..-|..++-..+++ ..-|.+|.+ ......+|+|++++.||+|||+|+|.+... =+.+.|.++|+
T Consensus 6 l~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~ 85 (155)
T cd08690 6 LTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVY 85 (155)
T ss_pred EEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEEE
Confidence 34444444445565543 346777764 345678899999999999999999887433 12468999999
Q ss_pred cCCccC--CcccceEEEEEeeEEeecccccceeecCCCCCCCCcceEEEEE
Q 000133 2048 NKSKMG--KSSFGKVTIQIDRVVMLGAVAGEYTLLPESKSGPSRNLEIEFL 2096 (2100)
Q Consensus 2048 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2096 (2100)
|++.|+ .+.+|+|.|.++.+.........|.|. ++++..-=.||+++.
T Consensus 86 d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~-~~~k~~Gg~l~v~ir 135 (155)
T cd08690 86 HKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLM-DGRKATGGKLEVKVR 135 (155)
T ss_pred eCCCcccCCCeeEEEEEEcccccccCcceEEEEhh-hCCCCcCCEEEEEEE
Confidence 999984 477799999999998887888899885 433222223666553
No 125
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=98.42 E-value=2.7e-07 Score=96.90 Aligned_cols=93 Identities=19% Similarity=0.340 Sum_probs=72.4
Q ss_pred CCCceeeeeccchhhhh--h-CCCcceEEEecC--CCCCccccccccCCCcccccccee-ccccC-CCCCeEEEEeecCC
Q 000133 1978 PGTLVVIIKRGNNMKQS--V-GNPSVYCKLTLG--NTPPRQTKIVSTGPNPEWEESFAW-SFEIP-PKGQKLHISCKNKS 2050 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~--~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~ 2050 (2100)
.+.|+|+|.+..++... . |...-|+++.++ ....++|||++++.||+|||.|.| .++.. .....|++.|++++
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d 94 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFD 94 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcC
Confidence 36799999999999753 3 446688888876 344568999999999999999999 34311 23348999999999
Q ss_pred ccCCccc-ceEEEEEeeEEee
Q 000133 2051 KMGKSSF-GKVTIQIDRVVML 2070 (2100)
Q Consensus 2051 ~~~~~~~-~~~~~~~~~~~~~ 2070 (2100)
.||++.+ |++.|++.++-..
T Consensus 95 ~~~~d~~lG~~~i~L~~l~~~ 115 (128)
T cd08388 95 RYSRDDVIGEVVCPLAGADLL 115 (128)
T ss_pred CCCCCceeEEEEEeccccCCC
Confidence 9976655 9999999887553
No 126
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.41 E-value=4.8e-07 Score=94.53 Aligned_cols=89 Identities=20% Similarity=0.363 Sum_probs=74.2
Q ss_pred Cceeeeeccchhhh--hhCCCcceEEEecCCCCC-ccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCC-c
Q 000133 1980 TLVVIIKRGNNMKQ--SVGNPSVYCKLTLGNTPP-RQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGK-S 2055 (2100)
Q Consensus 1980 ~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 2055 (2100)
+|.|+|.+..++.. ..|.+.-++++.+|+... .+|++++++.||+|||.|.|... .|.++.|.|+|++++.||+ +
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~-~~~~~~L~~~V~d~d~~~~dd 79 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEAT-LPGNSILKISVMDYDLLGSDD 79 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEec-CCCCCEEEEEEEECCCCCCCc
Confidence 47899999999864 445577899999987655 46889999999999999999876 4678999999999999965 5
Q ss_pred ccceEEEEEeeEEe
Q 000133 2056 SFGKVTIQIDRVVM 2069 (2100)
Q Consensus 2056 ~~~~~~~~~~~~~~ 2069 (2100)
.+|++.|+++++.-
T Consensus 80 ~iG~~~i~l~~~~~ 93 (124)
T cd04037 80 LIGETVIDLEDRFF 93 (124)
T ss_pred eeEEEEEeeccccc
Confidence 56999999998854
No 127
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=98.40 E-value=4.9e-07 Score=95.03 Aligned_cols=102 Identities=19% Similarity=0.283 Sum_probs=83.4
Q ss_pred Cceeeeeccchhhhh--hCCCcceEEEecCCCCCccccccc-cCCCccccccceeccccCC---CCCeEEEEeecCCccC
Q 000133 1980 TLVVIIKRGNNMKQS--VGNPSVYCKLTLGNTPPRQTKIVS-TGPNPEWEESFAWSFEIPP---KGQKLHISCKNKSKMG 2053 (2100)
Q Consensus 1980 ~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 2053 (2100)
+|.|+|....+++.. +|...-++.+.+++....+|+++. .+.+|+|||.|.|.+..+. ..+.|.++|++++.||
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 478999999988754 566778999999876788999986 4799999999999887442 2679999999999977
Q ss_pred Cc-ccceEEEEEeeEEeeccc-----ccceeecC
Q 000133 2054 KS-SFGKVTIQIDRVVMLGAV-----AGEYTLLP 2081 (2100)
Q Consensus 2054 ~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 2081 (2100)
++ .+|++.|.+.++...+.- ...|.|..
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~ 114 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRR 114 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeEC
Confidence 65 569999999999987763 46688854
No 128
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.40 E-value=0.00024 Score=86.51 Aligned_cols=328 Identities=11% Similarity=0.085 Sum_probs=210.2
Q ss_pred hhhHHHHHhhcCCCCChHHHHHHHHHHHHHhC----CCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCc
Q 000133 357 LIVEQTLVNQFKPRLPFLVQERTIEALASLYG----NPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEG 432 (2100)
Q Consensus 357 ~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~----~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~ 432 (2100)
+.+.+....+|++.++. +|++|+..++.|.- +.+. +.+..- -..|.+-+...++++.-....++..+.....
T Consensus 603 ~~ivStiL~~L~~k~p~-vR~~aadl~~sl~~vlk~c~e~-~~l~kl--g~iLyE~lge~ypEvLgsil~Ai~~I~sv~~ 678 (975)
T COG5181 603 SMIVSTILKLLRSKPPD-VRIRAADLMGSLAKVLKACGET-KELAKL--GNILYENLGEDYPEVLGSILKAICSIYSVHR 678 (975)
T ss_pred HHHHHHHHHHhcCCCcc-HHHHHHHHHHHHHHHHHhcchH-HHHHHH--hHHHHHhcCcccHHHHHHHHHHHHHHhhhhc
Confidence 36777888888888775 69999998887731 1111 111111 1235566667788888777777776665421
Q ss_pred c--chHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCccc---HHHHHhcCChHHHHHhccCCCHHHHHHHHHH
Q 000133 433 S--LWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDS---KWAITAAGGIPPLVQILESGSAKAKEDSASI 507 (2100)
Q Consensus 433 ~--~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~---~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~a 507 (2100)
- .+.-+ .|.+|.|..+|++....++......++.++...++. ++-.. +--.|+.+|.+.+.++|..|...
T Consensus 679 ~~~mqpPi--~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A~~t 753 (975)
T COG5181 679 FRSMQPPI--SGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRNATET 753 (975)
T ss_pred ccccCCch--hhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHhhhhh
Confidence 1 11111 377899999999999999999999999998766653 11111 12358888999999999999999
Q ss_pred HHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCC-CCCcHHHHHHHhhcCCcchHHHHHHHHHH
Q 000133 508 LRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKS-DTATISQLTALLTSDLPESKVYVLDALKS 586 (2100)
Q Consensus 508 L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~-~~~~i~~L~~lL~~~~~~~~~~a~~aL~~ 586 (2100)
++.++.- |.-+.++..|++-|+......+...+-+++-.+... .-..+|.|+.--+.....++...+++++.
T Consensus 754 fG~Is~a-------iGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~f 826 (975)
T COG5181 754 FGCISRA-------IGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCF 826 (975)
T ss_pred hhhHHhh-------cCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHH
Confidence 9998753 112335566666666544444444444444444332 22566666665555666788889999887
Q ss_pred HHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhh----cCCCHH
Q 000133 587 MLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLL----DVGSEC 662 (2100)
Q Consensus 587 l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL----~~~~~~ 662 (2100)
+-....+.. ...+ ....|.|.+.|.+.++.-|.-|...+..|+-+.+.. ....+.-+|++++ -+.++.
T Consensus 827 mFeyig~~s--~dYv--y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gt----g~eda~IHLlNllwpNIle~sPh 898 (975)
T COG5181 827 MFEYIGQAS--LDYV--YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGT----GDEDAAIHLLNLLWPNILEPSPH 898 (975)
T ss_pred HHHHHHHHH--HHHH--HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCc----ccHHHHHHHHHHhhhhccCCCcH
Confidence 765433221 1111 122567777889999999999999999998875432 1112334455555 466777
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHhCC-ChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 000133 663 ILVEASRCLAAIFLSVRENREVAAVARD-ALSPLVVLAGSPVLEVAEQATCALANLI 718 (2100)
Q Consensus 663 v~~~aa~aL~~L~~~~~~~~~~~~~~~~-~l~~Lv~ll~~~~~evr~~aa~aL~~L~ 718 (2100)
++...-..+..++.. +..| ....+.+-|.+|...||.. -|+..|.+
T Consensus 899 vi~~~~Eg~e~~~~~---------lg~g~~m~Yv~qGLFHPs~~VRk~-ywtvyn~m 945 (975)
T COG5181 899 VIQSFDEGMESFATV---------LGSGAMMKYVQQGLFHPSSTVRKR-YWTVYNIM 945 (975)
T ss_pred HHHHHHHHHHHHHHH---------hccHHHHHHHHHhccCchHHHHHH-HHHHHhhh
Confidence 777777777666432 2233 3456678899999988754 66777665
No 129
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.3e-05 Score=94.00 Aligned_cols=200 Identities=20% Similarity=0.190 Sum_probs=155.4
Q ss_pred HHHHHHH--HHHHHccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhcCCHHHHHHHHHHHHhhhccc
Q 000133 8 LASVAQC--IEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKEN 85 (2100)
Q Consensus 8 ~~~v~~~--~~~l~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~ 85 (2100)
...+.+| +..+..++.+.++|+.|+.+|..++..-+++..++. .|+..+++..|.+++.++|..|+.+++...+|+
T Consensus 78 ~~~~~~~~~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~--~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNN 155 (342)
T KOG2160|consen 78 ISDVMSMIPIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLIS--LGGLVPLLGYLENSDAELRELAARVIGTAVQNN 155 (342)
T ss_pred HHHHHHhhhhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhh--ccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcC
Confidence 3445555 444556788889999999999999999999988764 688888899999999999999999999999655
Q ss_pred h-hhHHHHhcCChHHHHHhhcCCCHH-HHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHHHHH
Q 000133 86 E-LRVKVLLGGCIPPLLGLLKSSSAE-GQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLL 163 (2100)
Q Consensus 86 ~-~~~~i~~~g~i~~Lv~lL~s~~~~-~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a 163 (2100)
+ .+..++..|+.+.|+..|.++++. +|..|..|+..+-. +...|...|...++...|.+.+.+.+.. .-.+..+
T Consensus 156 P~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIR---n~~~g~~~fl~~~G~~~L~~vl~~~~~~-~~lkrK~ 231 (342)
T KOG2160|consen 156 PKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIR---NNKPGQDEFLKLNGYQVLRDVLQSNNTS-VKLKRKA 231 (342)
T ss_pred HHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHh---cCcHHHHHHHhcCCHHHHHHHHHcCCcc-hHHHHHH
Confidence 5 788999999999999999876655 56788888887776 4556667788888899999999885433 2356667
Q ss_pred HHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHh
Q 000133 164 TGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMM 213 (2100)
Q Consensus 164 ~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~ 213 (2100)
+..+..+..........+-..|....+..+....+.++++.+..++..+.
T Consensus 232 ~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 232 LFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred HHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 77777777655444444456677777777777778888888777765444
No 130
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=98.39 E-value=4.8e-07 Score=94.69 Aligned_cols=87 Identities=16% Similarity=0.398 Sum_probs=71.0
Q ss_pred ceeeeeccchhhh-hhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCcc-cc
Q 000133 1981 LVVIIKRGNNMKQ-SVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKSS-FG 2058 (2100)
Q Consensus 1981 ~~~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 2058 (2100)
|.|+|...+.... .+|...-|+.+..|+....+|+|++++.+|+|+|.|.|.+. .++.+.|+|++++.+|++. +|
T Consensus 4 L~V~i~~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~---~~~~l~~~V~d~~~~~~~~~iG 80 (125)
T cd04021 4 LQITVESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT---PQSTLEFKVWSHHTLKADVLLG 80 (125)
T ss_pred EEEEEEeeECCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC---CCCEEEEEEEeCCCCCCCcEEE
Confidence 6788887763322 24456788999998666899999999999999999998864 4789999999999997654 59
Q ss_pred eEEEEEeeEEee
Q 000133 2059 KVTIQIDRVVML 2070 (2100)
Q Consensus 2059 ~~~~~~~~~~~~ 2070 (2100)
++.|+++++...
T Consensus 81 ~~~i~l~~l~~~ 92 (125)
T cd04021 81 EASLDLSDILKN 92 (125)
T ss_pred EEEEEHHHhHhh
Confidence 999999998764
No 131
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=98.39 E-value=4.1e-07 Score=93.32 Aligned_cols=102 Identities=21% Similarity=0.299 Sum_probs=81.1
Q ss_pred ceeeeeccchhhhhh-CCCcceEEEec-C----CC-CCccccccccCCCccccccceecccc--CCCCCeEEEEeecCCc
Q 000133 1981 LVVIIKRGNNMKQSV-GNPSVYCKLTL-G----NT-PPRQTKIVSTGPNPEWEESFAWSFEI--PPKGQKLHISCKNKSK 2051 (2100)
Q Consensus 1981 ~~~~~~r~~~~~~~~-~~~~~~~~~~~-~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 2051 (2100)
|+|+|.+..++...- |.+.-|+++.+ | +. ..++|||+.++.||.|||.|.|.+.. .+....|.+.|+++..
T Consensus 2 L~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~ 81 (120)
T cd08395 2 VTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYCF 81 (120)
T ss_pred EEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEecc
Confidence 789999999996643 55667888885 4 21 12479999999999999999999863 2455689999999987
Q ss_pred cCCc-ccceEEEEEeeEEeecccccceeecCC
Q 000133 2052 MGKS-SFGKVTIQIDRVVMLGAVAGEYTLLPE 2082 (2100)
Q Consensus 2052 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2082 (2100)
+|++ .+|++++++..|...|...--|.|.+.
T Consensus 82 ~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~ 113 (120)
T cd08395 82 ARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR 113 (120)
T ss_pred cCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence 7766 579999999999999988888887543
No 132
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.36 E-value=6.1e-05 Score=94.18 Aligned_cols=277 Identities=27% Similarity=0.239 Sum_probs=177.5
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHhhcchhhhhhhhhcCChHHHHHhhccCChhhHHHHHHHHHHhhcCCchhhHHH
Q 000133 1231 AAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAV 1310 (2100)
Q Consensus 1231 ~al~~Li~~L~~~~~~~r~~Aa~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~La~~~~~~~~~~ 1310 (2100)
..++.++..+.+.+...|..|+..|+.+ ....++++|..+|.+.+...+..|+.+|+++.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~----------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~---------- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGEL----------GSEEAVPLLRELLSDEDPRVRDAAADALGELG---------- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhh----------chHHHHHHHHHHhcCCCHHHHHHHHHHHHccC----------
Confidence 5788999999999889999999887764 45668999999999999999999999999887
Q ss_pred HhhhcchhHHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHhhcChHHHHHHHhcCCc------------hHHHHH
Q 000133 1311 ADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFS------------PAQHSV 1378 (2100)
Q Consensus 1311 ~~v~~gal~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~~~~~~~i~~Lv~lL~~~~~------------~~~~~A 1378 (2100)
...+++.|++++....+..++..+...|+.+ ....++.+++..+.+... .+|..+
T Consensus 103 ---~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~----------~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 103 ---DPEAVPPLVELLENDENEGVRAAAARALGKL----------GDERALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred ---ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhc----------CchhhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 3457899999998656889999999988866 344457888888888662 356666
Q ss_pred HHHHHHhcccHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCchhhHHHHhcCcHHHHHHHhccCChhHH
Q 000133 1379 VRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLC 1458 (2100)
Q Consensus 1379 ~~aL~~L~~~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k~~i~~~~~i~~lv~~L~~~~~~~~ 1458 (2100)
+.+|..+.. ...++.+..++.+.+..+|..|..+|+.+..++ ......+.+.+.++...++
T Consensus 170 ~~~l~~~~~----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr 230 (335)
T COG1413 170 AEALGELGD----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVR 230 (335)
T ss_pred HHHHHHcCC----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHH
Confidence 666666542 234677777777777788888888887777663 1244566666666666666
Q ss_pred HHHHHHHHHHHhccCCcccccccCchHHHHHHhccCCCCchhHhHHHHHHHHhhcCCCcccccccccCCChHhhhhccCC
Q 000133 1459 SAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDS 1538 (2100)
Q Consensus 1459 ~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~~~~~~~~l~~Lv~~L~~ 1538 (2100)
..+...+ +..... .....+...+...+ +.....+...+.. ........++...+.+
T Consensus 231 ~~~~~~l---~~~~~~-------~~~~~l~~~l~~~~--~~~~~~~~~~~~~------------~~~~~~~~~l~~~~~~ 286 (335)
T COG1413 231 KAALLAL---GEIGDE-------EAVDALAKALEDED--VILALLAAAALGA------------LDLAEAALPLLLLLID 286 (335)
T ss_pred HHHHHHh---cccCcc-------hhHHHHHHHHhccc--hHHHHHHHHHhcc------------cCchhhHHHHHHHhhc
Confidence 6555443 222222 13455555555333 3222222222210 1222334455555555
Q ss_pred CCHHHHHHHHHHHHHhhccccccccccccCchHHHHHHhccCCHHHHHHHHHHHH
Q 000133 1539 PAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALV 1593 (2100)
Q Consensus 1539 ~~~~vq~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~lL~s~~~~vr~~Al~AL~ 1593 (2100)
....++..++..++..... .....+.....+++..++..+...+.
T Consensus 287 ~~~~~~~~~~~~l~~~~~~----------~~~~a~~~~~~~~~~~~~~~~~~~~~ 331 (335)
T COG1413 287 EANAVRLEAALALGQIGQE----------KAVAALLLALEDGDADVRKAALILLE 331 (335)
T ss_pred chhhHHHHHHHHHHhhccc----------chHHHHHHHhcCCchhhHHHHHHHHH
Confidence 5666666666666665542 22333444445555555555554443
No 133
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=3e-05 Score=93.96 Aligned_cols=417 Identities=16% Similarity=0.145 Sum_probs=254.8
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhccCcc--chHHHHhCCcHHHHH-HhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHh
Q 000133 406 VGLITMATNEVQEELVRALLKLCNNEGS--LWRALQGREGIQLLI-SLLGLSSEQQQECSVALLCLLSNENDDSKWAITA 482 (2100)
Q Consensus 406 v~lL~~~~~~v~~~A~~aL~~L~~~~~~--~~~~i~~~g~i~~Lv-~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~ 482 (2100)
.+-+.++-++-|++|+.-+.++..+--. ....|. ..|..|. ++..+++...+..+...+...+- .-......+-
T Consensus 6 ~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~--k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~i-aLg~~~~~Y~ 82 (675)
T KOG0212|consen 6 ARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIR--KVISELAGDYAYSPHANMRKGGLIGLAAVAI-ALGIKDAGYL 82 (675)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHH--HHHHHHHHHhccCcccccccchHHHHHHHHH-HhccccHHHH
Confidence 3445566677788888777777653211 111121 2333222 24445554444433322222210 0111122266
Q ss_pred cCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--CCcHHHHHHHhhcCChhHHHHHHHHHHHHhc----C
Q 000133 483 AGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVES--ADAVPALLWLLKNGSANGKEIAAKTLNHLIH----K 556 (2100)
Q Consensus 483 ~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~----~ 556 (2100)
++.+++.+..+.+.+.++|..||..|.|++.. .|..+.. ......|.++..+.+..++. ++..|-.+.. .
T Consensus 83 ~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv---~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVte 158 (675)
T KOG0212|consen 83 EKIVPPVLNCFSDQDSQVRYYACESLYNIAKV---AKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVTE 158 (675)
T ss_pred HHhhHHHHHhccCccceeeeHhHHHHHHHHHH---hccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhccc
Confidence 77899999999999999999999999999853 2211111 22335556666665555554 3444443332 2
Q ss_pred CC-----CCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000133 557 SD-----TATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAG 631 (2100)
Q Consensus 557 ~~-----~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~ 631 (2100)
.. ++.+|-|..-+...++..|.+...-|..+-.....+ .+. .-....+.|..+|.++++++|.-+-.+|.+
T Consensus 159 ~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~-m~~---yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~ 234 (675)
T KOG0212|consen 159 SASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLE-MIS---YLPSLLDGLFNMLSDSSDEVRTLTDTLLSE 234 (675)
T ss_pred cccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHH-HHh---cchHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 22 234455555555678889998888877665444322 111 112346778888999999999877776665
Q ss_pred Hh----cCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCH-HH
Q 000133 632 IF----ETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVL-EV 706 (2100)
Q Consensus 632 L~----~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~-ev 706 (2100)
+- .. +.. +-....++.++.-+.++.+.++..|...+.-+..-. .......-.|.+..+++.+.+..+ .+
T Consensus 235 fL~eI~s~-P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~--g~~~l~~~s~il~~iLpc~s~~e~~~i 308 (675)
T KOG0212|consen 235 FLAEIRSS-PSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIP--GRDLLLYLSGILTAILPCLSDTEEMSI 308 (675)
T ss_pred HHHHHhcC-ccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCC--CcchhhhhhhhhhhcccCCCCCccccH
Confidence 43 22 211 122357888999999999999999999988775432 222223445667777777776555 35
Q ss_pred HHHHHHHHHHHh--cC-cHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHH
Q 000133 707 AEQATCALANLI--LD-SEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVS 783 (2100)
Q Consensus 707 r~~aa~aL~~L~--~~-~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~ 783 (2100)
++.+...=..|. .+ .....++--..+++.|.+.+.++..+.|-.+..=+..+....++.--. .....++.+..
T Consensus 309 ~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~----h~~~if~tLL~ 384 (675)
T KOG0212|consen 309 KEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLV----HNDSIFLTLLK 384 (675)
T ss_pred HHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhh----hccHHHHHHHH
Confidence 555444332232 22 222222223478899999999999998888877776666655542111 23567788999
Q ss_pred hhhhcccccchHhHHHHHHHHHHcCCCCCCCCcccceeeccCCCchhhhhhhccCChhHHHHHHHHHHHHhc
Q 000133 784 FLESASGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCR 855 (2100)
Q Consensus 784 ~l~s~~~~v~~~~al~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~a~~~L~~L~~ 855 (2100)
.|.+.+++++ ..++..+++++..+.+.++ -.-+-.|.....+.+..++..+.-|+.+||.
T Consensus 385 tLsd~sd~vv-l~~L~lla~i~~s~~~~~~-----------~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 385 TLSDRSDEVV-LLALSLLASICSSSNSPNL-----------RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCL 444 (675)
T ss_pred hhcCchhHHH-HHHHHHHHHHhcCcccccH-----------HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Confidence 9999889999 9999999999887776322 2234456666677777788888888888854
No 134
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=5.3e-05 Score=89.11 Aligned_cols=178 Identities=20% Similarity=0.164 Sum_probs=149.6
Q ss_pred CCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHH
Q 000133 411 MATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLV 490 (2100)
Q Consensus 411 ~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv 490 (2100)
+.+.+-++.|..-|..++.+ -++...+...||+.+++..+++.+..+|+.|+++++.++..+|..+..+.+.|+.+.|+
T Consensus 94 s~~le~ke~ald~Le~lve~-iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVED-IDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHh-hhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 34677888888888888877 66778888999999999999999999999999999999999999999999999999999
Q ss_pred HhccCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhc--CChhHHHHHHHHHHHHhcCCCC--------
Q 000133 491 QILESG-SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKN--GSANGKEIAAKTLNHLIHKSDT-------- 559 (2100)
Q Consensus 491 ~lL~~~-~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~Aa~aL~~L~~~~~~-------- 559 (2100)
..|.+. +..+|..|..|++.+-.+++.....+...++...|...+++ .+.+.+.++...+..+......
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~ 252 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSL 252 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHh
Confidence 999865 67788999999999999999999999999999999999999 5667899999999988764421
Q ss_pred CcHHHHHHHhhcCCcchHHHHHHHHHHHHh
Q 000133 560 ATISQLTALLTSDLPESKVYVLDALKSMLS 589 (2100)
Q Consensus 560 ~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~ 589 (2100)
+....+..+....+.++++++..++..+..
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 223334455556677788887777766554
No 135
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=98.32 E-value=1.1e-06 Score=88.38 Aligned_cols=80 Identities=30% Similarity=0.596 Sum_probs=65.6
Q ss_pred ceeeeeccchhhhhhCCCcceEEEecCC----CCCccccccccCCCccccccceeccccCCCCCeEEEEeecC-------
Q 000133 1981 LVVIIKRGNNMKQSVGNPSVYCKLTLGN----TPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNK------- 2049 (2100)
Q Consensus 1981 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 2049 (2100)
|.|+|....+++ |...-++.|.+.. ....+||++.++.||+|||+|++.++ ..+.|.+.|+++
T Consensus 1 L~V~V~~A~~L~---~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~---~s~~L~~~v~d~~~~~~~~ 74 (118)
T cd08686 1 LNVIVHSAQGFK---QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE---GSQTLRILCYEKCYSKVKL 74 (118)
T ss_pred CEEEEEeCCCCC---CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC---CCCEEEEEEEEcccccccc
Confidence 689999999997 4577788886643 24578999999999999999999876 367999999997
Q ss_pred CccCCccc-ceEEEEEee
Q 000133 2050 SKMGKSSF-GKVTIQIDR 2066 (2100)
Q Consensus 2050 ~~~~~~~~-~~~~~~~~~ 2066 (2100)
+.+|++.+ |+..|++|.
T Consensus 75 d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 75 DGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred cccCcccEEEEEEEEECH
Confidence 46677555 999999974
No 136
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=98.31 E-value=1.3e-06 Score=92.01 Aligned_cols=89 Identities=25% Similarity=0.363 Sum_probs=71.7
Q ss_pred Cceeeeeccchhh-hhhCCCcceEEEecCC------------CCCccccccccCCCccc-cccceeccccCCCCCeEEEE
Q 000133 1980 TLVVIIKRGNNMK-QSVGNPSVYCKLTLGN------------TPPRQTKIVSTGPNPEW-EESFAWSFEIPPKGQKLHIS 2045 (2100)
Q Consensus 1980 ~~~~~~~r~~~~~-~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 2045 (2100)
+.+|++++..+++ ..+|.+.-|+++.++. +..++|+|++++.||+| +|.|.|... .++.|.|+
T Consensus 2 ~~~~~~~~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~---~~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL---PTDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCCCccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC---CCCEEEEE
Confidence 4688999999985 4456677777777743 23689999999999999 999999873 56899999
Q ss_pred eecCCccC----CcccceEEEEEeeEEeec
Q 000133 2046 CKNKSKMG----KSSFGKVTIQIDRVVMLG 2071 (2100)
Q Consensus 2046 ~~~~~~~~----~~~~~~~~~~~~~~~~~~ 2071 (2100)
|+|+...| ++.+|+++|++..+...+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~ 108 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERH 108 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhcccc
Confidence 99976654 478899999999997643
No 137
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=98.31 E-value=5.5e-07 Score=96.07 Aligned_cols=90 Identities=22% Similarity=0.358 Sum_probs=72.3
Q ss_pred CCCceeeeeccchhhh--hhCCCcceEEEecC--C--CCCccccccccCCCccccccceeccccCCC-CCeEEEEeecCC
Q 000133 1978 PGTLVVIIKRGNNMKQ--SVGNPSVYCKLTLG--N--TPPRQTKIVSTGPNPEWEESFAWSFEIPPK-GQKLHISCKNKS 2050 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 2050 (2100)
+|.|+|+|.+..++.. ..|....|++++++ + ...++|+|++++.||+|||.|.|.+..... ...|.++|++++
T Consensus 14 ~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~ 93 (136)
T cd08405 14 ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKD 93 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECC
Confidence 5889999999999864 34456678887773 2 235689999999999999999998653333 458999999999
Q ss_pred ccCCcc-cceEEEEEeeE
Q 000133 2051 KMGKSS-FGKVTIQIDRV 2067 (2100)
Q Consensus 2051 ~~~~~~-~~~~~~~~~~~ 2067 (2100)
.||++. +|++.|.++.+
T Consensus 94 ~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 94 RLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred CCCCCcEeEEEEECCccC
Confidence 998754 69999999875
No 138
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=98.29 E-value=6.9e-07 Score=94.13 Aligned_cols=87 Identities=21% Similarity=0.359 Sum_probs=69.4
Q ss_pred CCceeeeeccchhhhhh----CCCcceEEEecCCCC----CccccccccCCCccccccceeccccCCC-CCeEEEEeecC
Q 000133 1979 GTLVVIIKRGNNMKQSV----GNPSVYCKLTLGNTP----PRQTKIVSTGPNPEWEESFAWSFEIPPK-GQKLHISCKNK 2049 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~~----~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 2049 (2100)
|.|+|+|++..|+...- ++..-|.++.++.+. .|+|+|++++.||+|||.|+|.+...-. .-.|.++|+++
T Consensus 15 ~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~ 94 (138)
T cd08407 15 NRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQ 94 (138)
T ss_pred CeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeC
Confidence 67999999999998653 446778888877554 4589999999999999999997542222 23899999999
Q ss_pred CccCCcc-cceEEEEEe
Q 000133 2050 SKMGKSS-FGKVTIQID 2065 (2100)
Q Consensus 2050 ~~~~~~~-~~~~~~~~~ 2065 (2100)
..||++. +|+|.|.+.
T Consensus 95 d~~~~~d~iG~v~lg~~ 111 (138)
T cd08407 95 DSPGQSLPLGRCSLGLH 111 (138)
T ss_pred CCCcCcceeceEEecCc
Confidence 9998764 499999885
No 139
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.26 E-value=0.00016 Score=90.35 Aligned_cols=248 Identities=25% Similarity=0.275 Sum_probs=156.8
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHH
Q 000133 400 EAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWA 479 (2100)
Q Consensus 400 g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~ 479 (2100)
..++.++..+.+++..++..+...+..+... ..++.+..++.+.++.++..|+.+|+.+- ++.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~~---- 105 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDPRVRDAAADALGELG--DPE---- 105 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHccC--Chh----
Confidence 4577788899998999999999886554332 67899999999999999999999999986 343
Q ss_pred HHhcCChHHHHHhcc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCCh------------hHHHHH
Q 000133 480 ITAAGGIPPLVQILE-SGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSA------------NGKEIA 546 (2100)
Q Consensus 480 i~~~g~i~~Lv~lL~-~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~------------~~~~~A 546 (2100)
.++.|+.++. +++..+|..|+++|..+-.. ..+.+|+..+++... .++..+
T Consensus 106 -----a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 106 -----AVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred -----HHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 7899999999 58999999999999998642 247888888887552 234444
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHH
Q 000133 547 AKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSA 626 (2100)
Q Consensus 547 a~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa 626 (2100)
..+|+.+ +++..++.+...+.+....+|..+..+|+.+.... ..+.+.+...+.+.+..+|..++
T Consensus 170 ~~~l~~~---~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------------~~~~~~l~~~~~~~~~~vr~~~~ 234 (335)
T COG1413 170 AEALGEL---GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN------------VEAADLLVKALSDESLEVRKAAL 234 (335)
T ss_pred HHHHHHc---CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------------hhHHHHHHHHhcCCCHHHHHHHH
Confidence 4444444 34455556666666655566666666555332111 12245555555666666666666
Q ss_pred HHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHH
Q 000133 627 SALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEV 706 (2100)
Q Consensus 627 ~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~ev 706 (2100)
.+|..+... ..++.+...+.+.+..+...+..+.... ........+...+.+....+
T Consensus 235 ~~l~~~~~~-----------~~~~~l~~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~~~~~~~~~~~ 291 (335)
T COG1413 235 LALGEIGDE-----------EAVDALAKALEDEDVILALLAAAALGAL------------DLAEAALPLLLLLIDEANAV 291 (335)
T ss_pred HHhcccCcc-----------hhHHHHHHHHhccchHHHHHHHHHhccc------------CchhhHHHHHHHhhcchhhH
Confidence 555555433 2345555555555544444444333311 01223444455555555555
Q ss_pred HHHHHHHHHHHh
Q 000133 707 AEQATCALANLI 718 (2100)
Q Consensus 707 r~~aa~aL~~L~ 718 (2100)
+..++.++..+.
T Consensus 292 ~~~~~~~l~~~~ 303 (335)
T COG1413 292 RLEAALALGQIG 303 (335)
T ss_pred HHHHHHHHHhhc
Confidence 555555555443
No 140
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=98.25 E-value=8.7e-07 Score=94.26 Aligned_cols=85 Identities=25% Similarity=0.436 Sum_probs=68.7
Q ss_pred CCceeeeeccchhhhh-hCCCcceEEEecCCC----CCccccccccCCCccccccceeccccCCCCC-eEEEEeecCCcc
Q 000133 1979 GTLVVIIKRGNNMKQS-VGNPSVYCKLTLGNT----PPRQTKIVSTGPNPEWEESFAWSFEIPPKGQ-KLHISCKNKSKM 2052 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 2052 (2100)
+.|+|+|.+..|+... .|..+.|.++.+..+ .+|+|||++++.||+|||.|.|.+...+..+ .|+++|++++.+
T Consensus 15 ~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~~ 94 (137)
T cd08409 15 NRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGGV 94 (137)
T ss_pred CeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCCC
Confidence 5689999999999643 455677887776532 4778999999999999999999987555664 899999999988
Q ss_pred CCcc-cceEEEE
Q 000133 2053 GKSS-FGKVTIQ 2063 (2100)
Q Consensus 2053 ~~~~-~~~~~~~ 2063 (2100)
+++. +|+|.|.
T Consensus 95 ~~~~~lG~v~ig 106 (137)
T cd08409 95 RKSKLLGRVVLG 106 (137)
T ss_pred CCcceEEEEEEC
Confidence 7664 4999876
No 141
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=98.24 E-value=1.3e-06 Score=93.59 Aligned_cols=97 Identities=21% Similarity=0.343 Sum_probs=77.8
Q ss_pred CCCceeeeeccchhhh--hhCCCcceEEEecCCC----------------------------CCccccccccCCCccccc
Q 000133 1978 PGTLVVIIKRGNNMKQ--SVGNPSVYCKLTLGNT----------------------------PPRQTKIVSTGPNPEWEE 2027 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~ 2027 (2100)
.|.|+|+|++..++.. ..|...-|+.+.+++. ...+|+|++++.||+|||
T Consensus 27 ~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE 106 (153)
T cd08676 27 IFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNE 106 (153)
T ss_pred eEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcccc
Confidence 3789999999999864 3455678888887643 236899999999999999
Q ss_pred cceeccccCCCCCeEEEEeecCCccCCcccceEEEEEeeEEeecccccceee
Q 000133 2028 SFAWSFEIPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVAGEYTL 2079 (2100)
Q Consensus 2028 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2079 (2100)
.|.|.+.. +.++.|.|+|++++ .+.+|++.|.++.+...| +.+-|.|
T Consensus 107 ~F~f~v~~-~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~~~-~d~W~~L 153 (153)
T cd08676 107 TFRFEVED-VSNDQLHLDIWDHD---DDFLGCVNIPLKDLPSCG-LDSWFKL 153 (153)
T ss_pred EEEEEecc-CCCCEEEEEEEecC---CCeEEEEEEEHHHhCCCC-CCCeEeC
Confidence 99999874 45789999999997 778899999999998433 4555544
No 142
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=98.23 E-value=1.2e-06 Score=93.07 Aligned_cols=89 Identities=22% Similarity=0.308 Sum_probs=72.3
Q ss_pred CCCceeeeeccchhhh--hhCCCcceEEEecCC----CCCccccccccCCCccccccceeccccCCC-CCeEEEEeecCC
Q 000133 1978 PGTLVVIIKRGNNMKQ--SVGNPSVYCKLTLGN----TPPRQTKIVSTGPNPEWEESFAWSFEIPPK-GQKLHISCKNKS 2050 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 2050 (2100)
+|.|+|+|.+..++.. ..|.+.-|+++.+++ ...++|+|++++.||+|||.|.|.+..+.. +..|.++|++++
T Consensus 12 ~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d 91 (133)
T cd08384 12 RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKD 91 (133)
T ss_pred CCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCC
Confidence 5889999999999964 345566788887753 346789999999999999999998764433 468999999999
Q ss_pred ccCC-cccceEEEEEee
Q 000133 2051 KMGK-SSFGKVTIQIDR 2066 (2100)
Q Consensus 2051 ~~~~-~~~~~~~~~~~~ 2066 (2100)
.+++ +.+|+|.|.++.
T Consensus 92 ~~~~~~~lG~~~i~l~~ 108 (133)
T cd08384 92 IGKSNDYIGGLQLGINA 108 (133)
T ss_pred CCCCccEEEEEEEecCC
Confidence 9876 456999999985
No 143
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=98.22 E-value=6.6e-07 Score=95.41 Aligned_cols=102 Identities=21% Similarity=0.329 Sum_probs=80.9
Q ss_pred CCceeeeeccchhhhh--hCCCcceEEEecCCC----CCccccccccCCCccccccceeccccCC-CCCeEEEEeecCCc
Q 000133 1979 GTLVVIIKRGNNMKQS--VGNPSVYCKLTLGNT----PPRQTKIVSTGPNPEWEESFAWSFEIPP-KGQKLHISCKNKSK 2051 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 2051 (2100)
|.|+|+|.+..++... .|....|+++.+++. ...+|+++.++.+|.|||.|.|.+..+. .++.|.|+|+++..
T Consensus 14 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~ 93 (134)
T cd00276 14 ERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDS 93 (134)
T ss_pred CEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCC
Confidence 7899999999998764 556778998888654 3568999999999999999998765332 26799999999999
Q ss_pred cCCcc-cceEEEEEeeEEeecccccceeecCC
Q 000133 2052 MGKSS-FGKVTIQIDRVVMLGAVAGEYTLLPE 2082 (2100)
Q Consensus 2052 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 2082 (2100)
|+++. +|++.|+++. .......-|.|...
T Consensus 94 ~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 123 (134)
T cd00276 94 VGRNEVIGQVVLGPDS--GGEELEHWNEMLAS 123 (134)
T ss_pred CCCCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence 87655 5999999999 55556666777443
No 144
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=98.22 E-value=2.2e-06 Score=90.16 Aligned_cols=100 Identities=15% Similarity=0.377 Sum_probs=79.1
Q ss_pred ceeeeeccchhhh--hhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCcc------
Q 000133 1981 LVVIIKRGNNMKQ--SVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKM------ 2052 (2100)
Q Consensus 1981 ~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 2052 (2100)
|+|+|.+..++.. ..|.+.-|+.+..|+ ...+|+++.++.+|+|+|.|.|....+ .+.+.|+|++++.+
T Consensus 3 L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~~v~~t~~P~Wne~f~f~~~~~--~~~l~i~v~d~d~~~~~~~~ 79 (127)
T cd04027 3 ISITVVCAQGLIAKDKTGTSDPYVTVQVGK-TKKRTKTIPQNLNPVWNEKFHFECHNS--SDRIKVRVWDEDDDIKSRLK 79 (127)
T ss_pred EEEEEEECcCCcCCCCCCCcCcEEEEEECC-EeeecceecCCCCCccceEEEEEecCC--CCEEEEEEEECCCCcccccc
Confidence 7899999998864 345566889999975 467899999999999999999876532 57899999998753
Q ss_pred ------CCcccceEEEEEeeEEeecccccceeecCCCCC
Q 000133 2053 ------GKSSFGKVTIQIDRVVMLGAVAGEYTLLPESKS 2085 (2100)
Q Consensus 2053 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2085 (2100)
+.+.+|++.|+++.+ .+....-|.|.+.++.
T Consensus 80 ~~~~~~~~~~iG~~~i~l~~~--~~~~~~w~~L~~~~~~ 116 (127)
T cd04027 80 QKFTRESDDFLGQTIIEVRTL--SGEMDVWYNLEKRTDK 116 (127)
T ss_pred eeccccCCCcceEEEEEhHHc--cCCCCeEEECccCCCC
Confidence 456789999999985 4666778888765543
No 145
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=98.22 E-value=7.5e-07 Score=86.41 Aligned_cols=80 Identities=26% Similarity=0.536 Sum_probs=68.8
Q ss_pred ceeeeeccchhhh--hhCCCcceEEEecCCCCC--ccccccccCCCccccccceeccccCCCCCeEEEEeecCCccC-Cc
Q 000133 1981 LVVIIKRGNNMKQ--SVGNPSVYCKLTLGNTPP--RQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMG-KS 2055 (2100)
Q Consensus 1981 ~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 2055 (2100)
|+|+|++..++.. ..+....++.+.++..+. ..|++++++.+|.|+|.|.|.+..++..+ |+|++++++.|| +.
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~-l~~~V~~~~~~~~~~ 79 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDS-LSFEVWDKDSFGKDE 79 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTE-EEEEEEEETSSSSEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccc-eEEEEEECCCCCCCC
Confidence 6899999999987 566677999999987766 99999999999999999999988555555 999999999999 56
Q ss_pred ccceEE
Q 000133 2056 SFGKVT 2061 (2100)
Q Consensus 2056 ~~~~~~ 2061 (2100)
.+|+|+
T Consensus 80 ~iG~~~ 85 (85)
T PF00168_consen 80 LIGEVK 85 (85)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 669875
No 146
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.21 E-value=2.5e-05 Score=95.84 Aligned_cols=226 Identities=17% Similarity=0.156 Sum_probs=153.1
Q ss_pred HHHHHHhhC--CCCHHHHHHHHHHHHHhccCCcccHHHHHh------cCChHHHHHhccCCCHHHHHHHHHHHHHHhcCC
Q 000133 444 IQLLISLLG--LSSEQQQECSVALLCLLSNENDDSKWAITA------AGGIPPLVQILESGSAKAKEDSASILRNLCNHS 515 (2100)
Q Consensus 444 i~~Lv~lL~--s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~------~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~ 515 (2100)
...++.+|+ ++++++..+....+..+...++.....+.. .....++++++..++..++..|+..|..+....
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~ 136 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG 136 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 445555554 468889999999999998877776666665 235789999999999999999999999999875
Q ss_pred hhhHHHHHhCCcHHHHHHHhhcC----ChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhcc
Q 000133 516 EDIRACVESADAVPALLWLLKNG----SANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVV 591 (2100)
Q Consensus 516 ~~~~~~i~~~g~i~~Lv~lL~~~----~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~ 591 (2100)
+....... .+.++.+++.+.+. +...+..+..+|.+|.. ..
T Consensus 137 ~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~----------------------------------~~ 181 (312)
T PF03224_consen 137 PKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR----------------------------------SK 181 (312)
T ss_dssp TT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT----------------------------------SH
T ss_pred CccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC----------------------------------cc
Confidence 54333221 45667777777652 11233444444444432 21
Q ss_pred CchhHHHHhhhccchHHHHHHHh------c-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhc-CCCHHH
Q 000133 592 SFSDILREGSAANDAVETMIKIL------S-STKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLD-VGSECI 663 (2100)
Q Consensus 592 ~~~~~~~~~i~~~~~i~~Lv~lL------~-s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~-~~~~~v 663 (2100)
..|..+.+.++++.+..++ . ..+..+++.++.+++-|+.+ ++..+.+...+.+|.|+++++ ...+.+
T Consensus 182 ----~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKv 256 (312)
T PF03224_consen 182 ----EYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFE-PEIAEELNKKYLIPLLADILKDSIKEKV 256 (312)
T ss_dssp ----HHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHH
T ss_pred ----hhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcC-HHHHHHHhccchHHHHHHHHHhcccchH
Confidence 1455667788999999988 2 34678999999999999997 788888989999999999995 456789
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCC--CCHHHHHH
Q 000133 664 LVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGS--PVLEVAEQ 709 (2100)
Q Consensus 664 ~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~--~~~evr~~ 709 (2100)
.+-+..++.|+.....+.....++..+.++.+-.+... +++|+.+-
T Consensus 257 vRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~ed 304 (312)
T PF03224_consen 257 VRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTED 304 (312)
T ss_dssp HHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHH
Confidence 99999999999877655456667888888777777653 67777643
No 147
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=98.21 E-value=1.2e-06 Score=91.24 Aligned_cols=85 Identities=12% Similarity=0.202 Sum_probs=70.8
Q ss_pred hhCCCcceEEEecCCCC------CccccccccCCCccccccceeccccCCCCCeEEEEeecCCc----cCCc-ccceEEE
Q 000133 1994 SVGNPSVYCKLTLGNTP------PRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSK----MGKS-SFGKVTI 2062 (2100)
Q Consensus 1994 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~ 2062 (2100)
.+|.+.-|+++.++..+ .++|+|++++.||+|+|+|.|.+. .+..+.|.++|++++. +|++ .+|+|+|
T Consensus 17 ~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~-~~~~~~l~~~V~d~d~~~~~~~~~d~iG~~~i 95 (120)
T cd04048 17 VLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYY-FEEVQKLRFEVYDVDSKSKDLSDHDFLGEAEC 95 (120)
T ss_pred CCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEE-eEeeeEEEEEEEEecCCcCCCCCCcEEEEEEE
Confidence 35666778888887654 489999999999999999999865 4567899999999987 6554 4699999
Q ss_pred EEeeEEeecccccceee
Q 000133 2063 QIDRVVMLGAVAGEYTL 2079 (2100)
Q Consensus 2063 ~~~~~~~~~~~~~~~~~ 2079 (2100)
+++++.......-.|.|
T Consensus 96 ~l~~l~~~~~~~~~~~l 112 (120)
T cd04048 96 TLGEIVSSPGQKLTLPL 112 (120)
T ss_pred EHHHHhcCCCcEEEEEc
Confidence 99999987777778888
No 148
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.21 E-value=8.8e-05 Score=87.19 Aligned_cols=272 Identities=16% Similarity=0.124 Sum_probs=179.8
Q ss_pred hHHHHhCCcHHHHHHhhCCCCHH--HHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccC-CCHHHHHHHHHHHHHH
Q 000133 435 WRALQGREGIQLLISLLGLSSEQ--QQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILES-GSAKAKEDSASILRNL 511 (2100)
Q Consensus 435 ~~~i~~~g~i~~Lv~lL~s~~~~--v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~vre~A~~aL~~L 511 (2100)
+.++...|++..|++++..++.+ ++.+|...|-.+. ..+++..+...| ...++.+-+. ..++.+...+..|.++
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~--~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL--VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH--hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 34677789999999999998755 4888999999887 367888888776 6666666543 3678888899999999
Q ss_pred hcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhcc
Q 000133 512 CNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVV 591 (2100)
Q Consensus 512 ~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~ 591 (2100)
-.|+++.+..++..|++..++-..+..+|...+.++-+|+|.+-+.-. +
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~---------------a---------------- 298 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQ---------------A---------------- 298 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchh---------------H----------------
Confidence 999999999999999999999888988999999999999998764421 1
Q ss_pred CchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHH
Q 000133 592 SFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCL 671 (2100)
Q Consensus 592 ~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL 671 (2100)
.+..+....+-+.|..+-.+.++-+|.+||.+++.|+.+ ++.-..+...|-+...--++.+.++..- ++--
T Consensus 299 -----~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~-KE~E~~VrkS~TlaLVEPlva~~DP~~F---ARD~ 369 (832)
T KOG3678|consen 299 -----VQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATN-KEVEREVRKSGTLALVEPLVASLDPGRF---ARDA 369 (832)
T ss_pred -----HHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhh-hhhhHHHhhccchhhhhhhhhccCcchh---hhhh
Confidence 122333333455566666777888999999999999986 6665666666643333333333343210 0100
Q ss_pred HHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhc--CcHHH-HHHHHcCcHHHHHHHHccCChhHH
Q 000133 672 AAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLIL--DSEVS-EKAIAEEIILPATRVLCEGTISGK 748 (2100)
Q Consensus 672 ~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~--~~~~~-~~~v~~~~v~~L~~ll~~~~~~~~ 748 (2100)
..-+.+ ...++++.|+.+|.+...|.|..++.-++.=.. ..... .-+-+-++|..|-++..+.+.-..
T Consensus 370 hd~aQG---------~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaa 440 (832)
T KOG3678|consen 370 HDYAQG---------RGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAA 440 (832)
T ss_pred hhhhcc---------CChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHH
Confidence 011111 124688999999998777766555544432211 11111 111244666666666665444444
Q ss_pred HHHHHHHHHH
Q 000133 749 TLAAAAIARL 758 (2100)
Q Consensus 749 ~~Aa~aL~~l 758 (2100)
.-|..||--+
T Consensus 441 kfAseALtvi 450 (832)
T KOG3678|consen 441 KFASEALTVI 450 (832)
T ss_pred HHHHHHHHHh
Confidence 4555555433
No 149
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=98.21 E-value=1.5e-06 Score=92.38 Aligned_cols=86 Identities=20% Similarity=0.297 Sum_probs=67.3
Q ss_pred CCceeeeeccchhhh--hhCCCcceEEEecCCC----CCccccccccCCCccccccceeccccCCCCC-eEEEEeecCCc
Q 000133 1979 GTLVVIIKRGNNMKQ--SVGNPSVYCKLTLGNT----PPRQTKIVSTGPNPEWEESFAWSFEIPPKGQ-KLHISCKNKSK 2051 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 2051 (2100)
|.|+|+|.+..++.. ..|...-|+++.+.++ .+++|+|++++.||+|||.|.|.+......+ .+.+.|++++.
T Consensus 14 ~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~ 93 (135)
T cd08410 14 GRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNV 93 (135)
T ss_pred CeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCC
Confidence 789999999999964 3455677888876432 4679999999999999999999875333333 69999999999
Q ss_pred cCCccc-ceEEEEE
Q 000133 2052 MGKSSF-GKVTIQI 2064 (2100)
Q Consensus 2052 ~~~~~~-~~~~~~~ 2064 (2100)
++++.+ |++.|..
T Consensus 94 ~~~~~~iG~~~l~~ 107 (135)
T cd08410 94 KSSNDFIGRIVIGQ 107 (135)
T ss_pred CCCCcEEEEEEEcC
Confidence 876665 9988653
No 150
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.21 E-value=2.8e-05 Score=95.41 Aligned_cols=221 Identities=17% Similarity=0.171 Sum_probs=153.4
Q ss_pred CchHHHHHHHhc--CCHHHHHHHHHHHHhhhccchhhHHHHhc-------CChHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 000133 54 QAVPVLVSLLRS--GSLAVKIQAATVLGSLCKENELRVKVLLG-------GCIPPLLGLLKSSSAEGQIAAAKTIYAVSQ 124 (2100)
Q Consensus 54 g~v~~L~~lL~~--~~~~v~~~aa~~L~~L~~~~~~~~~i~~~-------g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~ 124 (2100)
++...++.+|+. .++++...+...+..+..+++.+...... ..+.++++++.++|.-.+..|+..|..+..
T Consensus 55 ~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 55 QYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLS 134 (312)
T ss_dssp -------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 556777787765 47789999999999999877766554332 368899999999999999999999999887
Q ss_pred cCCCCcccccchhccCChHHHHHHhhccCCC-cchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhH-----cc--
Q 000133 125 GGAKDYVGSKIFSTEGVVPVLWEQLKNGLKS-GNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLL-----TL-- 196 (2100)
Q Consensus 125 ~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~-~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL-----~s-- 196 (2100)
.+.... .....+.++.+++.+++.... +..++..+..+|.+|. ..+.++..+.+.|+++.+.+++ .+
T Consensus 135 ~~~~~~----~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL-~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~ 209 (312)
T PF03224_consen 135 QGPKRS----EKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL-RSKEYRQVFWKSNGVSPLFDILRKQATNSNS 209 (312)
T ss_dssp STTT------HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH-TSHHHHHHHHTHHHHHHHHHHHH--------
T ss_pred cCCccc----cchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh-CcchhHHHHHhcCcHHHHHHHHHhhcccCCC
Confidence 332111 111257789999998874322 2235677889999998 5668889899999999999999 22
Q ss_pred CCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChH-hHHHHHhCCChHHH
Q 000133 197 GQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKD-ARREIAGSNGIPAM 275 (2100)
Q Consensus 197 ~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~-~~~~i~~~g~i~~L 275 (2100)
.+..++.+++.+++.|+... .....+...+.++.|+++++....+++.+.+..+|+||....++ +...++..|+++.+
T Consensus 210 ~~~Ql~Y~~ll~lWlLSF~~-~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l 288 (312)
T PF03224_consen 210 SGIQLQYQALLCLWLLSFEP-EIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTL 288 (312)
T ss_dssp -HHHHHHHHHHHHHHHTTSH-HHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHH
T ss_pred CchhHHHHHHHHHHHHhcCH-HHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHH
Confidence 34567899999998777654 47788888889999999999988889999999999999986554 66777777666665
Q ss_pred HHhhc
Q 000133 276 INATI 280 (2100)
Q Consensus 276 v~ll~ 280 (2100)
-.+..
T Consensus 289 ~~L~~ 293 (312)
T PF03224_consen 289 QNLSE 293 (312)
T ss_dssp HHHHS
T ss_pred HHHhc
Confidence 55543
No 151
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.20 E-value=0.00069 Score=80.64 Aligned_cols=347 Identities=14% Similarity=0.102 Sum_probs=222.9
Q ss_pred CCchHHHHHHHhcC-CHHHHHHHHHHHHhhhccchhhHHHHh------c-CChHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 000133 53 SQAVPVLVSLLRSG-SLAVKIQAATVLGSLCKENELRVKVLL------G-GCIPPLLGLLKSSSAEGQIAAAKTIYAVSQ 124 (2100)
Q Consensus 53 ~g~v~~L~~lL~~~-~~~v~~~aa~~L~~L~~~~~~~~~i~~------~-g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~ 124 (2100)
+.++..++.++... .++....+...+..+-.++..|..+.. . -..++.+.+|...+.-........+..++.
T Consensus 64 ~~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~ 143 (442)
T KOG2759|consen 64 AQYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLAC 143 (442)
T ss_pred HHHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 45688899999764 445667777777777766666654331 1 348999999999888777666677776666
Q ss_pred cCCCCcccccchhccCChHH----HHHHhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHcc--CC
Q 000133 125 GGAKDYVGSKIFSTEGVVPV----LWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTL--GQ 198 (2100)
Q Consensus 125 ~~~~~~~~~~~~~~~g~vp~----L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s--~~ 198 (2100)
-+... ++.+.... |-.++++....+ ....+.+||..+... +++|-.++.+.|+..++..+.+ .+
T Consensus 144 ~g~~~-------~~~~e~~~~~~~l~~~l~~~~~~~--~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~~ 213 (442)
T KOG2759|consen 144 FGNCK-------MELSELDVYKGFLKEQLQSSTNND--YIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKCG 213 (442)
T ss_pred hcccc-------ccchHHHHHHHHHHHHHhccCCCc--hHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCcc
Confidence 32211 11122222 334445433333 233567788888754 4788889999999999999954 45
Q ss_pred HHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCh------HhHHHHHhCCCh
Q 000133 199 SSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCK------DARREIAGSNGI 272 (2100)
Q Consensus 199 ~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~------~~~~~i~~~g~i 272 (2100)
-.+|.+.+.+++.|..... ..+.+...+.++.|.++++.+....+-+-++.+++|+....+ +....++.++..
T Consensus 214 ~QlQYqsifciWlLtFn~~-~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~ 292 (442)
T KOG2759|consen 214 FQLQYQSIFCIWLLTFNPH-AAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVL 292 (442)
T ss_pred hhHHHHHHHHHHHhhcCHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCch
Confidence 6788999999988776543 556677789999999999988778899999999999987654 333445555554
Q ss_pred HHHHHhhcCCCcchhhhhhhHHHHHHHH---HHHH----HhhCCCcchhhhc-cccccCCCChhhhhhhhhhhHHHHHHh
Q 000133 273 PAMINATIAPSKEFMQGEYAQALQENAM---CALA----NISGGLSNVISSL-GQSLESCSSPAQVADTLGALASALMIY 344 (2100)
Q Consensus 273 ~~Lv~ll~~~~~e~~~~~~~~~l~~~a~---~aL~----nl~~~~~~~i~~l-~~~~~~~~~~~~~~~~~gal~~ll~~l 344 (2100)
+. +..|... .-.++++.+.-- ..|. .+|.-+.+.-+-. |.+.-||-....- +|
T Consensus 293 k~-l~~L~~r------kysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~------------FW 353 (442)
T KOG2759|consen 293 KT-LQSLEER------KYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEK------------FW 353 (442)
T ss_pred HH-HHHHHhc------CCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccc------------hH
Confidence 44 4545321 112233322211 1111 1222112222211 1111222111100 11
Q ss_pred ccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHH-hCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHH
Q 000133 345 DSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASL-YGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRA 423 (2100)
Q Consensus 345 ~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L-~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~a 423 (2100)
+. +..+-.-+...+...|+++|+...+..+-.-|+.-++.. -+.|+.+..+.+.|+...++.++.++|++|+.+|..|
T Consensus 354 ~e-Na~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALla 432 (442)
T KOG2759|consen 354 RE-NADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLA 432 (442)
T ss_pred HH-hHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHH
Confidence 10 000001245578999999999888766666677777776 6779999999999999999999999999999999999
Q ss_pred HHHhhcc
Q 000133 424 LLKLCNN 430 (2100)
Q Consensus 424 L~~L~~~ 430 (2100)
+..|..+
T Consensus 433 vQ~lm~~ 439 (442)
T KOG2759|consen 433 VQKLMVH 439 (442)
T ss_pred HHHHHhh
Confidence 8876554
No 152
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=98.19 E-value=1.9e-06 Score=90.29 Aligned_cols=94 Identities=21% Similarity=0.300 Sum_probs=73.8
Q ss_pred CCCceeeeeccchhhhh--hCCCcceEEEecCC----CCCccccccccCCCccccccceeccccC--CCCCeEEEEeecC
Q 000133 1978 PGTLVVIIKRGNNMKQS--VGNPSVYCKLTLGN----TPPRQTKIVSTGPNPEWEESFAWSFEIP--PKGQKLHISCKNK 2049 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 2049 (2100)
++.|+|+|.+..++... .|....|+++.+.. ....+|+++.++.+|+|||.|.|..-.+ ..++.+.++|+++
T Consensus 14 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~ 93 (123)
T cd04035 14 NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDE 93 (123)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEc
Confidence 46799999999998642 34566778777632 3467899999999999999999852212 2357999999999
Q ss_pred CccCCcccceEEEEEeeEEeec
Q 000133 2050 SKMGKSSFGKVTIQIDRVVMLG 2071 (2100)
Q Consensus 2050 ~~~~~~~~~~~~~~~~~~~~~~ 2071 (2100)
+.|+.+.+|++.|+++++...+
T Consensus 94 ~~~~~~~iG~~~i~l~~l~~~~ 115 (123)
T cd04035 94 DRFGNDFLGETRIPLKKLKPNQ 115 (123)
T ss_pred CCcCCeeEEEEEEEcccCCCCc
Confidence 9997788899999999987654
No 153
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=98.19 E-value=1.4e-06 Score=92.86 Aligned_cols=89 Identities=26% Similarity=0.426 Sum_probs=69.8
Q ss_pred CCCceeeeeccchhhhh--hCCCcceEEEecCC-C---CCccccccccCCCccccccceeccccCCCC-CeEEEEeecCC
Q 000133 1978 PGTLVVIIKRGNNMKQS--VGNPSVYCKLTLGN-T---PPRQTKIVSTGPNPEWEESFAWSFEIPPKG-QKLHISCKNKS 2050 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 2050 (2100)
.|.|+|+|.+..++... .|...-|+++.++. + ..++|+|++++.||+|||.|.|.+..+... ..|.++|++++
T Consensus 14 ~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~ 93 (136)
T cd08402 14 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYD 93 (136)
T ss_pred CCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCC
Confidence 47899999999998643 34466788888753 2 356799999999999999999987532222 37999999999
Q ss_pred ccCCcc-cceEEEEEee
Q 000133 2051 KMGKSS-FGKVTIQIDR 2066 (2100)
Q Consensus 2051 ~~~~~~-~~~~~~~~~~ 2066 (2100)
.||++. +|+|.|.+..
T Consensus 94 ~~~~~~~iG~~~i~~~~ 110 (136)
T cd08402 94 RIGKNDPIGKVVLGCNA 110 (136)
T ss_pred CCCCCceeEEEEECCcc
Confidence 999865 6999999864
No 154
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=98.17 E-value=1.9e-06 Score=90.93 Aligned_cols=88 Identities=18% Similarity=0.306 Sum_probs=67.1
Q ss_pred CCCceeeeeccchhhhhh--CCCcceEEEecCCC----CCccccccccCCCccccccceeccccCC-CCCeEEEEeecCC
Q 000133 1978 PGTLVVIIKRGNNMKQSV--GNPSVYCKLTLGNT----PPRQTKIVSTGPNPEWEESFAWSFEIPP-KGQKLHISCKNKS 2050 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 2050 (2100)
.+.|+|+|.+..|+...- |.+.-|.++.+-.. ..++|+|++++.||+|||.|.|.+...- ....|.++|++++
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d 93 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAEST 93 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCC
Confidence 357999999999997653 44667777777422 2568999999999999999999864322 2348999999999
Q ss_pred ccCCcc-cceEEEEEe
Q 000133 2051 KMGKSS-FGKVTIQID 2065 (2100)
Q Consensus 2051 ~~~~~~-~~~~~~~~~ 2065 (2100)
.||++. +|+|.|...
T Consensus 94 ~~~~~~~iG~v~lg~~ 109 (136)
T cd08406 94 EDGKTPNVGHVIIGPA 109 (136)
T ss_pred CCCCCCeeEEEEECCC
Confidence 886654 599988543
No 155
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=98.15 E-value=5.1e-06 Score=87.80 Aligned_cols=100 Identities=20% Similarity=0.354 Sum_probs=78.6
Q ss_pred Cceeeeeccchhhhh----hCCCcceEEEecCC-----CCCccccccccCC-CccccccceeccccCCCCCeEEEEeecC
Q 000133 1980 TLVVIIKRGNNMKQS----VGNPSVYCKLTLGN-----TPPRQTKIVSTGP-NPEWEESFAWSFEIPPKGQKLHISCKNK 2049 (2100)
Q Consensus 1980 ~~~~~~~r~~~~~~~----~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 (2100)
.|+|+|.+..++... .|...-++.+.+.+ .....|++++++. +|+|+|.|.|... .|..+.|.++|+++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~-~~~~~~l~~~V~d~ 81 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVT-VPELAFLRFVVYDE 81 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEe-CCCeEEEEEEEEeC
Confidence 479999999999763 45566777777642 3457899998887 9999999999988 55567899999999
Q ss_pred CccCCcccceEEEEEeeEEeecccccceeecCCC
Q 000133 2050 SKMGKSSFGKVTIQIDRVVMLGAVAGEYTLLPES 2083 (2100)
Q Consensus 2050 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2083 (2100)
+.++...+|.+.+.++++ ..|. ..|+|...+
T Consensus 82 ~~~~~~~iG~~~~~l~~l-~~g~--~~~~l~~~~ 112 (128)
T cd00275 82 DSGDDDFLGQACLPLDSL-RQGY--RHVPLLDSK 112 (128)
T ss_pred CCCCCcEeEEEEEEhHHh-cCce--EEEEecCCC
Confidence 988777789999999987 3343 568886553
No 156
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.0015 Score=82.52 Aligned_cols=422 Identities=17% Similarity=0.146 Sum_probs=236.1
Q ss_pred HHHHHHHHHHHccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhcCCHHHHHHHHHHHHhhhccchhh
Q 000133 9 ASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELR 88 (2100)
Q Consensus 9 ~~v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~~ 88 (2100)
.++.+|++ +..+.+|..|.+.+..+.-..++.- ..+|.+++-..+.+.++|.-+--+|...+.+.++
T Consensus 38 ~dL~~lLd-----Snkd~~KleAmKRIia~iA~G~dvS-------~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpd- 104 (968)
T KOG1060|consen 38 DDLKQLLD-----SNKDSLKLEAMKRIIALIAKGKDVS-------LLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPD- 104 (968)
T ss_pred HHHHHHHh-----ccccHHHHHHHHHHHHHHhcCCcHH-------HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCC-
Confidence 34555555 5566889999999999887776543 3679999999999999999999999988854432
Q ss_pred HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhc-cCCCcchHHHHHHHHH
Q 000133 89 VKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKN-GLKSGNVVDNLLTGAL 167 (2100)
Q Consensus 89 ~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~-~~~~~~~v~~~a~~aL 167 (2100)
.. .=.|..+-+-|+++|+..|. .||+-++.-. -.-+.|.++-.++. ..+..+.|+..|+.++
T Consensus 105 --LA-LLSIntfQk~L~DpN~LiRa---sALRvlSsIR-----------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AI 167 (968)
T KOG1060|consen 105 --LA-LLSINTFQKALKDPNQLIRA---SALRVLSSIR-----------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAI 167 (968)
T ss_pred --ce-eeeHHHHHhhhcCCcHHHHH---HHHHHHHhcc-----------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 21 13477888899999999994 5566556511 11123444333333 3445566888888888
Q ss_pred HHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcch----------------------------
Q 000133 168 RNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSV---------------------------- 219 (2100)
Q Consensus 168 ~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~---------------------------- 219 (2100)
-.|-+-+.+...++ ++.+-.||.+.++-|.-.|+.++-..+-..-+.
T Consensus 168 pKLYsLd~e~k~qL-----~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~ 242 (968)
T KOG1060|consen 168 PKLYSLDPEQKDQL-----EEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLT 242 (968)
T ss_pred HHHhcCChhhHHHH-----HHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHH
Confidence 88766555555544 335555666665555544444443222110000
Q ss_pred ---hhHHhh------------------------------hchHHHHHH----HhcCCCCHHHHHHHHHHHHHhhcCChHh
Q 000133 220 ---CSRVLA------------------------------ADATKQLLK----LLGSGNEASVRAEAAGALKSLSDHCKDA 262 (2100)
Q Consensus 220 ---~~~i~~------------------------------~g~i~~Lv~----lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~ 262 (2100)
+..+.+ .--+..|++ +|.+.+ ..+...+|.+.+.++-.+ +.
T Consensus 243 RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n-~sVVmA~aql~y~lAP~~-~~ 320 (968)
T KOG1060|consen 243 RYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRN-PSVVMAVAQLFYHLAPKN-QV 320 (968)
T ss_pred HHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCC-cHHHHHHHhHHHhhCCHH-HH
Confidence 000000 001122222 222222 356667777777776421 11
Q ss_pred HHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHH
Q 000133 263 RREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALM 342 (2100)
Q Consensus 263 ~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~ 342 (2100)
. ..+.+|+++|.++. .+|.-.+..+.-++..
T Consensus 321 ~------~i~kaLvrLLrs~~----------~vqyvvL~nIa~~s~~--------------------------------- 351 (968)
T KOG1060|consen 321 T------KIAKALVRLLRSNR----------EVQYVVLQNIATISIK--------------------------------- 351 (968)
T ss_pred H------HHHHHHHHHHhcCC----------cchhhhHHHHHHHHhc---------------------------------
Confidence 1 12556777775542 3334334444333321
Q ss_pred HhccccCCCCCCCchhhHHHHHhhcCCC-CChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHH
Q 000133 343 IYDSKAESTKPSDPLIVEQTLVNQFKPR-LPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELV 421 (2100)
Q Consensus 343 ~l~~~~~~~~~~~~~~i~~~Lv~lL~~~-~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~ 421 (2100)
+|.-+.|.+..++-.. ++..++..-.+-|.+|+........+.+ +-..+.+.+.++-..++
T Consensus 352 ------------~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE------~q~YI~s~d~~faa~aV 413 (968)
T KOG1060|consen 352 ------------RPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRE------LQTYIKSSDRSFAAAAV 413 (968)
T ss_pred ------------chhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHH------HHHHHhcCchhHHHHHH
Confidence 2233444454444422 3334455555566666443333333222 33344566666677777
Q ss_pred HHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCC-CHHH
Q 000133 422 RALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG-SAKA 500 (2100)
Q Consensus 422 ~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v 500 (2100)
.+|+..+...... ....+.-|+.++++++..+..+++..+..|...++..... .+..|.+++.+- -+..
T Consensus 414 ~AiGrCA~~~~sv-----~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~-----ii~~La~lldti~vp~A 483 (968)
T KOG1060|consen 414 KAIGRCASRIGSV-----TDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLE-----ILFQLARLLDTILVPAA 483 (968)
T ss_pred HHHHHHHHhhCch-----hhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHH-----HHHHHHHHhhhhhhhhh
Confidence 7777766553322 2245778899999999999999999999888654443322 345677777543 4566
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHH
Q 000133 501 KEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKT 549 (2100)
Q Consensus 501 re~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~a 549 (2100)
|....|.++..|..-+... -.+++.+.+-+.+..+.+|-.....
T Consensus 484 RA~IiWLige~~e~vpri~-----PDVLR~laksFs~E~~evKlQILnL 527 (968)
T KOG1060|consen 484 RAGIIWLIGEYCEIVPRIA-----PDVLRKLAKSFSDEGDEVKLQILNL 527 (968)
T ss_pred hceeeeeehhhhhhcchhc-----hHHHHHHHHhhccccchhhHHHHHh
Confidence 7777777777665422221 2233444444444444444443333
No 157
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.14 E-value=0.00013 Score=85.84 Aligned_cols=275 Identities=17% Similarity=0.179 Sum_probs=183.0
Q ss_pred HHHHhcCCHHHHHHhHccCCHHH--HHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q 000133 179 AATVQAGGIDILVKLLTLGQSST--QAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLS 256 (2100)
Q Consensus 179 ~~i~~~g~v~~Lv~lL~s~~~~v--~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls 256 (2100)
..++..|+++.|++++.+++-+. +..|+++|-.+.... ++..+..-| ...++.+.+.....+..+..+++|.++-
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~ae--N~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAE--NRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF 250 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhh--hhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence 34778899999999999998765 889999997665432 556665554 5555555555555789999999999999
Q ss_pred cCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhh
Q 000133 257 DHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGA 336 (2100)
Q Consensus 257 ~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~ga 336 (2100)
.++.+....++..||++.++--.... ++.+.++++-+|.|+.......+.
T Consensus 251 KHSeet~~~Lvaa~~lD~vl~~~rRt---------~P~lLRH~ALAL~N~~L~~~~a~q--------------------- 300 (832)
T KOG3678|consen 251 KHSEETCQRLVAAGGLDAVLYWCRRT---------DPALLRHCALALGNCALHGGQAVQ--------------------- 300 (832)
T ss_pred hhhHHHHHHHHhhcccchheeecccC---------CHHHHHHHHHHhhhhhhhchhHHH---------------------
Confidence 99999999999999999988777654 388999999999998763110000
Q ss_pred hHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHH
Q 000133 337 LASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEV 416 (2100)
Q Consensus 337 l~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v 416 (2100)
-.+.+ ..+.+-|.- |....++..+..|+.+.+.|+.+.+.-..+...|.+...--++.+.||..
T Consensus 301 ----rrmve-----------Kr~~EWLF~-LA~skDel~R~~AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~ 364 (832)
T KOG3678|consen 301 ----RRMVE-----------KRAAEWLFP-LAFSKDELLRLHACLAVAVLATNKEVEREVRKSGTLALVEPLVASLDPGR 364 (832)
T ss_pred ----HHHHH-----------hhhhhhhhh-hhcchHHHHHHHHHHHHhhhhhhhhhhHHHhhccchhhhhhhhhccCcch
Confidence 01111 111222222 23344777899999999999999888888888777665544555545431
Q ss_pred HHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhcc--CCcccHHHHHhcCChHHHHHhcc
Q 000133 417 QEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSN--ENDDSKWAITAAGGIPPLVQILE 494 (2100)
Q Consensus 417 ~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~--~~~~~~~~i~~~g~i~~Lv~lL~ 494 (2100)
- +.+..++.+ =...+-++.|+.+|++..-+.|..++.-|+.=+. ........+-+.|+|..|-++..
T Consensus 365 F----------ARD~hd~aQ-G~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaS 433 (832)
T KOG3678|consen 365 F----------ARDAHDYAQ-GRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVAS 433 (832)
T ss_pred h----------hhhhhhhhc-cCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhc
Confidence 1 111111100 0011347889999997766666666555543221 11223455667889999988888
Q ss_pred CCCHHHHHHHHHHHHHHhc
Q 000133 495 SGSAKAKEDSASILRNLCN 513 (2100)
Q Consensus 495 ~~~~~vre~A~~aL~~L~~ 513 (2100)
+.+...-..|..+|.-+..
T Consensus 434 S~d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 434 SPDEVAAKFASEALTVIGE 452 (832)
T ss_pred CchHHHHHHHHHHHHHhcc
Confidence 7666555667777776654
No 158
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=98.11 E-value=2.7e-06 Score=90.47 Aligned_cols=88 Identities=19% Similarity=0.339 Sum_probs=70.4
Q ss_pred CCCceeeeeccchhhh--hhCCCcceEEEecCC----CCCccccccccCCCccccccceeccccCCCC-CeEEEEeecCC
Q 000133 1978 PGTLVVIIKRGNNMKQ--SVGNPSVYCKLTLGN----TPPRQTKIVSTGPNPEWEESFAWSFEIPPKG-QKLHISCKNKS 2050 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 2050 (2100)
.|.|+|+|.+..++.. ..|....++++.+++ ...++|+|++++.||.|+|.|.|.+...... ..|.++|++++
T Consensus 13 ~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~ 92 (134)
T cd08403 13 AGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYD 92 (134)
T ss_pred CCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECC
Confidence 3789999999999864 346677888888753 2467899999999999999999987533332 37999999999
Q ss_pred ccCCcc-cceEEEEEe
Q 000133 2051 KMGKSS-FGKVTIQID 2065 (2100)
Q Consensus 2051 ~~~~~~-~~~~~~~~~ 2065 (2100)
.+|++. +|++.|.+.
T Consensus 93 ~~~~~~~IG~~~l~~~ 108 (134)
T cd08403 93 RVGHNELIGVCRVGPN 108 (134)
T ss_pred CCCCCceeEEEEECCC
Confidence 998655 599999887
No 159
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=0.0016 Score=82.91 Aligned_cols=416 Identities=14% Similarity=0.094 Sum_probs=231.4
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCCh
Q 000133 407 GLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGI 486 (2100)
Q Consensus 407 ~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i 486 (2100)
.=|++.+.-++-.|+.+|++++.. +.. ....|.+.++++++++-++..|+.|+..+-...|+.... .+
T Consensus 114 nDL~s~nq~vVglAL~alg~i~s~--Ema-----rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~-----f~ 181 (866)
T KOG1062|consen 114 NDLNSSNQYVVGLALCALGNICSP--EMA-----RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH-----FV 181 (866)
T ss_pred hhccCCCeeehHHHHHHhhccCCH--HHh-----HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH-----hh
Confidence 345567777888899999998875 221 145677888999999999999999988887656654333 35
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhc---------------CChhHHHHHHHHHH
Q 000133 487 PPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKN---------------GSANGKEIAAKTLN 551 (2100)
Q Consensus 487 ~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~---------------~~~~~~~~Aa~aL~ 551 (2100)
+...++|.+.+..+--.....+..+|..+++.-..+.+ .++.||..|++ ++|=.+-...+.|
T Consensus 182 ~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlL- 258 (866)
T KOG1062|consen 182 IAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLL- 258 (866)
T ss_pred HHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHH-
Confidence 66778888888777777888888888877766555554 67777777765 1122333333333
Q ss_pred HHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHh-cCCCHHHHHHHHHHHH
Q 000133 552 HLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKIL-SSTKEETQAKSASALA 630 (2100)
Q Consensus 552 ~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL-~s~~~~~~~~Aa~aL~ 630 (2100)
.+|..++++....-...|+.++.......-.-..+ -.+.+...+ -.++..+|..|+.+|+
T Consensus 259 ---------------riLGq~d~daSd~M~DiLaqvatntdsskN~GnAI----LYE~V~TI~~I~~~~~LrvlainiLg 319 (866)
T KOG1062|consen 259 ---------------RILGQNDADASDLMNDILAQVATNTDSSKNAGNAI----LYECVRTIMDIRSNSGLRVLAINILG 319 (866)
T ss_pred ---------------HHhcCCCccHHHHHHHHHHHHHhcccccccchhHH----HHHHHHHHHhccCCchHHHHHHHHHH
Confidence 33334444444444444444443221100000000 011111111 1234455555555555
Q ss_pred HHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHH
Q 000133 631 GIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQA 710 (2100)
Q Consensus 631 ~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~a 710 (2100)
.+-.+++.+... =++..|.+....+...+++ +=..++..+++++..+|.+|
T Consensus 320 kFL~n~d~NirY----vaLn~L~r~V~~d~~avqr-------------------------Hr~tIleCL~DpD~SIkrra 370 (866)
T KOG1062|consen 320 KFLLNRDNNIRY----VALNMLLRVVQQDPTAVQR-------------------------HRSTILECLKDPDVSIKRRA 370 (866)
T ss_pred HHhcCCccceee----eehhhHHhhhcCCcHHHHH-------------------------HHHHHHHHhcCCcHHHHHHH
Confidence 555443332211 1233344444333322222 23345566788899999998
Q ss_pred HHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcC-ccchhHhhhhhccCcHHHHHHhhhhcc
Q 000133 711 TCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSR-KIDYTITDCVNRAGTVLALVSFLESAS 789 (2100)
Q Consensus 711 a~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~-~~~~~~~~~~~~~g~l~~li~~l~s~~ 789 (2100)
..-+..|.-.+... ..+..|+.+|...+++.+...+.-+..+.... +++.+..+ .+.+.+....
T Consensus 371 lELs~~lvn~~Nv~------~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~id---------tml~Vl~~aG 435 (866)
T KOG1062|consen 371 LELSYALVNESNVR------VMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHID---------TMLKVLKTAG 435 (866)
T ss_pred HHHHHHHhccccHH------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHH---------HHHHHHHhcc
Confidence 88888777555443 35677888888888888888888888777644 33433333 3333333333
Q ss_pred cccchHhHHHHHHHHHHcCCCCCCCCcccceeeccCCCchhhhhhhcc------CChhHHHHHHHHHHHHhcCCcccchh
Q 000133 790 GSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIAD------ATPLLQDKAIEILSRLCRDQPAVLGD 863 (2100)
Q Consensus 790 ~~v~~~~al~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~------~~~~~~~~a~~~L~~L~~~~~~~~g~ 863 (2100)
.-|. .+++..|..|..+.... ...+.+..|...+.. ..+.+.+-|.+++..| |+
T Consensus 436 ~~V~-~dv~~nll~LIa~~~~e-----------~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEY--------Gd 495 (866)
T KOG1062|consen 436 DFVN-DDVVNNLLRLIANAFQE-----------LHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEY--------GD 495 (866)
T ss_pred cccc-hhhHHHHHHHHhcCCcc-----------hhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhh--------hH
Confidence 3333 45555555554443210 011122222222222 2455567778888888 55
Q ss_pred ccccc----------ccchHHHHHHHhhc--CCcceecchhhHHHHHhhhchhhHHhhhhccccchhhHHHHHHHHhhhc
Q 000133 864 EVTGA----------SGCISSIARRVISC--TNPKVKIGGAALLICAAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVE 931 (2100)
Q Consensus 864 ~~~~~----------~~~~~~~~~~~l~s--~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Lv~~l~~~~ 931 (2100)
+++.. .--+...++.++.+ .+..+|..|-+++.+|+-- ...+.+-|+.++....++.
T Consensus 496 lll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr-----------~~s~~~ri~~lI~~~~~s~ 564 (866)
T KOG1062|consen 496 LLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSR-----------FHSSSERIKQLISSYKSSL 564 (866)
T ss_pred HhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhh-----------ccccHHHHHHHHHHhcccc
Confidence 55442 12233455556554 4688888888887777632 1222455666665555433
No 160
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.10 E-value=0.00074 Score=80.38 Aligned_cols=346 Identities=16% Similarity=0.109 Sum_probs=213.8
Q ss_pred hhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhc-------cccHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 000133 358 IVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLEN-------SEAKRLLVGLITMATNEVQEELVRALLKLCNN 430 (2100)
Q Consensus 358 ~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~-------~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~ 430 (2100)
.....++.++.+...+...+.+..-+..+.+....+..+.. .-.-...+.++...+.-+.....+.+..++..
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~ 144 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACF 144 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 34445556665544333344455555555444333322221 11244567888888888888888888888776
Q ss_pred CccchHHHHhCCc-HHHHHHhhCC-CCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCC--CHHHHHHHHH
Q 000133 431 EGSLWRALQGREG-IQLLISLLGL-SSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG--SAKAKEDSAS 506 (2100)
Q Consensus 431 ~~~~~~~i~~~g~-i~~Lv~lL~s-~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~vre~A~~ 506 (2100)
....-.. .+... ...|..++.+ .+.+....++.+|..+.. .++.+..++.++|+..++..+.+. +-++|.+.+.
T Consensus 145 g~~~~~~-~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsif 222 (442)
T KOG2759|consen 145 GNCKMEL-SELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIF 222 (442)
T ss_pred ccccccc-hHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc-CcchhheeeecCcchhhHHHHhccCcchhHHHHHHH
Confidence 5432110 00011 2344555555 566777778999999995 899999999999999999998432 7789999999
Q ss_pred HHHHHhcCChhhHHHHHhCCcHHHHHHHhhcC-ChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHH
Q 000133 507 ILRNLCNHSEDIRACVESADAVPALLWLLKNG-SANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALK 585 (2100)
Q Consensus 507 aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~ 585 (2100)
++|-|+-. +...+.+...+.++.|.++++.. ..++.+-++.++.|++..++..-...-... +-+...+..++.
T Consensus 223 ciWlLtFn-~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~-----~mv~~~v~k~l~ 296 (442)
T KOG2759|consen 223 CIWLLTFN-PHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIAS-----QMVLCKVLKTLQ 296 (442)
T ss_pred HHHHhhcC-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHH-----HHHhcCchHHHH
Confidence 99999974 66667777889999999999975 457888888999999876632111110000 001111222222
Q ss_pred HHHhcc-CchhHHHHhhhccchHHHHHHHhcCCCHHH----HHHHHHHHHHHhcCChh--------hHHHHHhc--CchH
Q 000133 586 SMLSVV-SFSDILREGSAANDAVETMIKILSSTKEET----QAKSASALAGIFETRKD--------LRESSIAV--KTLW 650 (2100)
Q Consensus 586 ~l~~~~-~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~----~~~Aa~aL~~L~~~~~~--------~~~~~~~~--g~v~ 650 (2100)
.|-... +.+|+... +..|-+-|.....++ .+.+---.+.|.+++.+ +.+.+-+. .++.
T Consensus 297 ~L~~rkysDEDL~~d-------i~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellk 369 (442)
T KOG2759|consen 297 SLEERKYSDEDLVDD-------IEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLK 369 (442)
T ss_pred HHHhcCCCcHHHHHH-------HHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHH
Confidence 222211 11121111 222222222111000 11111122334444322 22223322 2789
Q ss_pred HHHHhhcCC-CHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhc
Q 000133 651 SVMKLLDVG-SECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLIL 719 (2100)
Q Consensus 651 ~Lv~lL~~~-~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~ 719 (2100)
.|+.+|..+ ++.+.--||.=|+...++.|+.+.. +.+.|+=+.++.++.+++++||.+|..|+..|+.
T Consensus 370 iL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~v-v~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 370 ILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAV-VEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHH-HHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 999999655 4777888999999999988855554 8889999999999999999999999999988763
No 161
>PLN03008 Phospholipase D delta
Probab=98.08 E-value=6.3e-06 Score=106.69 Aligned_cols=86 Identities=19% Similarity=0.362 Sum_probs=75.0
Q ss_pred CCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCcccceEEEEEeeEEeeccccc
Q 000133 1996 GNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVAG 2075 (2100)
Q Consensus 1996 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2075 (2100)
+.+-.+..+.+|+.+--+|||++++.||+|+|.|++.+..| ...|.+.|||++.||.+.+|++.|++.++.....+.+
T Consensus 75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~--~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~ 152 (868)
T PLN03008 75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHP--FAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISG 152 (868)
T ss_pred CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCC--CceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEE
Confidence 34557889999876555899999999999999999998854 3589999999999999999999999999888778899
Q ss_pred ceeecCCC
Q 000133 2076 EYTLLPES 2083 (2100)
Q Consensus 2076 ~~~~~~~~ 2083 (2100)
-|.|..++
T Consensus 153 Wl~Ll~~~ 160 (868)
T PLN03008 153 WFPVLGAS 160 (868)
T ss_pred EEEccccC
Confidence 99997774
No 162
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=0.00022 Score=86.74 Aligned_cols=321 Identities=13% Similarity=0.094 Sum_probs=202.2
Q ss_pred hhcChHHHHHHHhcCCchHHHHHHHHHHHhcccHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCchhhH
Q 000133 1356 AARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKL 1435 (2100)
Q Consensus 1356 ~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k~ 1435 (2100)
-.+.+++++..+.+.+..+|+.|++.|++++.-.......+-..+...|+.+..+.+..||..| +.|-.+-++-.--+.
T Consensus 82 ~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~~ 160 (675)
T KOG0212|consen 82 LEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTESA 160 (675)
T ss_pred HHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhccccc
Confidence 3457889999999999999999999999999543333334445567889999999988887665 445555444100000
Q ss_pred -HHHhcCcHHHHHHHhccCChhHHHHHHHHHHHHHhccCCcccccccCchHHHHHHhccCCCCchhHhHHHHHHHHhhcC
Q 000133 1436 -EMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEH 1514 (2100)
Q Consensus 1436 -~i~~~~~i~~lv~~L~~~~~~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~~~~~~~~~A~~~L~nL~~~ 1514 (2100)
.+.=.+.++.+-.-++.-.+..|....+-++.|-..+...-........+.|+..|.++. ++++.-+.-+|.++...
T Consensus 161 ~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s--~eVr~~~~t~l~~fL~e 238 (675)
T KOG0212|consen 161 STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSS--DEVRTLTDTLLSEFLAE 238 (675)
T ss_pred cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCc--HHHHHHHHHHHHHHHHH
Confidence 111133455555555566677788777777777666654422335667888888888655 77776666677776433
Q ss_pred CCcccccccccCCChHhhhhccCCCCHHHHHHHHHHHHHhhccccccccccccCchHHHHHHhccCCH-HHHHHHHHHH-
Q 000133 1515 PQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIH-ILQQRAVKAL- 1592 (2100)
Q Consensus 1515 ~~~~~~~~~~~~~~l~~Lv~~L~~~~~~vq~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~lL~s~~~-~vr~~Al~AL- 1592 (2100)
-.+.... +.-.+.++.++..+.+.++++|..|..-+........-.......|++..+...+.++.+ .++..|...=
T Consensus 239 I~s~P~s-~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~ 317 (675)
T KOG0212|consen 239 IRSSPSS-MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNG 317 (675)
T ss_pred HhcCccc-cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHH
Confidence 2222221 245567899999999999999999999998887654444444445655556666655444 4565554433
Q ss_pred --HHhhcCChh-HHHhcc-ChHHHHHHhcccCCCchHHHHHHHHHHHHhhhcccchhh-hcccHHHHHHHhhcCCHHHHH
Q 000133 1593 --VSIALTWPN-EIAKEG-GVTELSKIILQADPSLPHALWESAASVLSSILQFSSEFY-LEVPVAVLVRLLRSGSEGTVI 1667 (2100)
Q Consensus 1593 --~~Ls~~~~n-~l~~~G-~i~~Ll~lL~~~~~~~~~~l~e~a~~~L~~i~~~~~~~~-~~~~v~~Lv~ll~~~~~~~~~ 1667 (2100)
.++-..... .=++-| ++..|.+.++++....+.+......-...+.- ++-+. .+...++|++-+++.++++..
T Consensus 318 ~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p--~ql~~h~~~if~tLL~tLsd~sd~vvl 395 (675)
T KOG0212|consen 318 LLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAP--GQLLVHNDSIFLTLLKTLSDRSDEVVL 395 (675)
T ss_pred HHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCc--chhhhhccHHHHHHHHhhcCchhHHHH
Confidence 233222211 112322 35566666666443444444442222222211 11222 234678899999999999999
Q ss_pred HHHHHHHHhccCChh
Q 000133 1668 GSLNALLVLESDDGT 1682 (2100)
Q Consensus 1668 ~a~~aL~~L~~~~~~ 1682 (2100)
.++..|.+++++...
T Consensus 396 ~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 396 LALSLLASICSSSNS 410 (675)
T ss_pred HHHHHHHHHhcCccc
Confidence 999999999887664
No 163
>PF05536 Neurochondrin: Neurochondrin
Probab=98.08 E-value=0.0093 Score=78.02 Aligned_cols=241 Identities=24% Similarity=0.266 Sum_probs=163.1
Q ss_pred hhHHHHHHHHHHHHccCCChhHHHHHHHHHHHHhhcch---hhhhhhhccCCchHHHHHHHhcC-------CHHHHHHHH
Q 000133 6 GTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRE---NAFSAVGSHSQAVPVLVSLLRSG-------SLAVKIQAA 75 (2100)
Q Consensus 6 ~~~~~v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~---~~~~~i~~~~g~v~~L~~lL~~~-------~~~v~~~aa 75 (2100)
+....+.+|+..|+... +++|..++..+-.+.+..+ ..++.+....| ...+-++|+++ ....+.-+.
T Consensus 2 ~~~~~l~~c~~lL~~~~--D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig-~~Fl~RLL~t~~~~~~~~~~~~~~Lav 78 (543)
T PF05536_consen 2 GQSASLEKCLSLLKSAD--DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIG-FKFLDRLLRTGSVPSDCPPEEYLSLAV 78 (543)
T ss_pred CchHHHHHHHHHhccCC--cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcC-hhHHHHHhcCCCCCCCCCHHHHHHHHH
Confidence 34678999999887654 6889999988888888765 23334444344 67888889883 346677788
Q ss_pred HHHHhhhccchhhHHHHhcCChHHHHHhhcCCCH-HHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCC
Q 000133 76 TVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSA-EGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLK 154 (2100)
Q Consensus 76 ~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~s~~~-~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~ 154 (2100)
.+|..+|..++....---.+.||.|++.+.+.+. +....|..+|..++. ...|.+.+.+.|++|.|.+.+..+
T Consensus 79 svL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias----~~~G~~aLl~~g~v~~L~ei~~~~-- 152 (543)
T PF05536_consen 79 SVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS----SPEGAKALLESGAVPALCEIIPNQ-- 152 (543)
T ss_pred HHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc----CcHhHHHHHhcCCHHHHHHHHHhC--
Confidence 9999999877754433334779999999987777 888899999999997 677899999999999999999872
Q ss_pred CcchHHHHHHHHHHHhccCCh-hhHHH--HHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcc-----hhhHHhhh
Q 000133 155 SGNVVDNLLTGALRNLSTSTE-GFWAA--TVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVS-----VCSRVLAA 226 (2100)
Q Consensus 155 ~~~~v~~~a~~aL~nL~~~~~-~~~~~--i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~-----~~~~i~~~ 226 (2100)
+...+.+...+.+++...+ ..|.. -.-...++.+....+......+-..+..|..+....+. ....-.-.
T Consensus 153 --~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~ 230 (543)
T PF05536_consen 153 --SFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLS 230 (543)
T ss_pred --cchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHH
Confidence 3345667788888875443 11110 00113345555555555666677778888777655421 11111223
Q ss_pred chHHHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q 000133 227 DATKQLLKLLGSGNEASVRAEAAGALKSLSD 257 (2100)
Q Consensus 227 g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~ 257 (2100)
.....+-.+|++....+-|..+......+..
T Consensus 231 ~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 231 DLRKGLRDILQSRLTPSQRDPALNLAASLLD 261 (543)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3455556667766556666666665555543
No 164
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=98.06 E-value=1.2e-05 Score=85.63 Aligned_cols=82 Identities=12% Similarity=0.301 Sum_probs=66.2
Q ss_pred ceeeeeccchhh--hhhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCC--------CCCeEEEEeecCC
Q 000133 1981 LVVIIKRGNNMK--QSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPP--------KGQKLHISCKNKS 2050 (2100)
Q Consensus 1981 ~~~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 2050 (2100)
|.|+|++..++. ..+|...-++++.+|+ ..++|++++++.||.|+|.|.|..-..+ ..+++.++|++++
T Consensus 3 l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~-~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 3 LRAYIYQARDLLAADKSGLSDPFARVSFLN-QSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEeecCcCCCCCCCCCCEEEEEECC-eeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 678999999884 4566677899999974 5788999999999999999999743221 2258999999999
Q ss_pred ccCCc-ccceEEEE
Q 000133 2051 KMGKS-SFGKVTIQ 2063 (2100)
Q Consensus 2051 ~~~~~-~~~~~~~~ 2063 (2100)
.+|++ .+|++.|.
T Consensus 82 ~~~~d~~iG~~~i~ 95 (135)
T cd04017 82 SVGKDEFLGRSVAK 95 (135)
T ss_pred CCCCCccceEEEee
Confidence 99875 66999974
No 165
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=98.06 E-value=4.3e-06 Score=89.18 Aligned_cols=89 Identities=16% Similarity=0.316 Sum_probs=70.5
Q ss_pred CCCceeeeeccchhhh--hhCCCcceEEEecCCC----CCccccccccCCCccccccceeccccCC-CCCeEEEEeecCC
Q 000133 1978 PGTLVVIIKRGNNMKQ--SVGNPSVYCKLTLGNT----PPRQTKIVSTGPNPEWEESFAWSFEIPP-KGQKLHISCKNKS 2050 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 2050 (2100)
.+.|+|+|.+..++.. ..|.+.-|+++.+..+ ..++|+|++++.||+|+|.|.|.+..+. .+..|.|+|++++
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d 93 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSD 93 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECC
Confidence 3679999999999864 3556677888877432 2568999999999999999998864222 3447889999999
Q ss_pred ccCCccc-ceEEEEEee
Q 000133 2051 KMGKSSF-GKVTIQIDR 2066 (2100)
Q Consensus 2051 ~~~~~~~-~~~~~~~~~ 2066 (2100)
.||++.+ |++.|.++.
T Consensus 94 ~~~~~~~iG~~~~~~~~ 110 (136)
T cd08404 94 RVTKNEVIGRLVLGPKA 110 (136)
T ss_pred CCCCCccEEEEEECCcC
Confidence 9976655 999999998
No 166
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.04 E-value=0.0034 Score=83.11 Aligned_cols=565 Identities=14% Similarity=0.107 Sum_probs=326.2
Q ss_pred hcCCHHHHHHHHHHHHhhhc-cchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCCh
Q 000133 64 RSGSLAVKIQAATVLGSLCK-ENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVV 142 (2100)
Q Consensus 64 ~~~~~~v~~~aa~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~v 142 (2100)
...+-.-+.+...-+.+++. ..+.+. +.-.+|.+-... .++.++...++.-+.++.. . +|-+.+ ..-..
T Consensus 92 ~~~di~~r~~~~~~l~~~a~~~~~~~t---r~~lipf~~e~~-~~~dev~~~~a~~~~~~~~----~-v~~~~~-~~~ll 161 (759)
T KOG0211|consen 92 SNTDIQLRLNSGRKLSNLALALGVERT---RLELIPFLTEAE-DDEDEVLLDLAEQLGTFLP----D-VGGPEY-AHMLL 161 (759)
T ss_pred Cchhhhhhhhhhccccchhhhcccchh---hhhhhhHHHHhc-cchhHHHHHHHHHhcccch----h-ccchhH-HHHhh
Confidence 33333455666666666552 111111 334467777776 6667777766666665554 1 111111 11122
Q ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhH
Q 000133 143 PVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSR 222 (2100)
Q Consensus 143 p~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~ 222 (2100)
|++-.+. . .....++..+...+...+...+.... ....++.+-.+-...-...+..+|+++.......++ .
T Consensus 162 ~~le~l~-~--~eet~vr~k~ve~l~~v~~~~~~~~~---~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~---~ 232 (759)
T KOG0211|consen 162 PPLELLA-T--VEETGVREKAVESLLKVAVGLPKEKL---REHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPD---D 232 (759)
T ss_pred HHHHhhh-H--HHHHHHHHHHHHHHHHHHHhcChHHH---HHHHHHHHHHccchhhhhcchhhhhhhHHhccCCCh---H
Confidence 2222222 2 12233566666666666543322111 122233333322221123456677777666543331 1
Q ss_pred HhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHH
Q 000133 223 VLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCA 302 (2100)
Q Consensus 223 i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~a 302 (2100)
.+... ++...+-+-.+..+.+|..++.-+.+++.. .....+..+.++.+..+..... ..+++.|..+
T Consensus 233 ~vk~e-lr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~---~~~~~~~s~v~~~~~~L~~Ddq---------dsVr~~a~~~ 299 (759)
T KOG0211|consen 233 AVKRE-LRPIVQSLCQDDTPMVRRAVASNLGNIAKV---LESEIVKSEVLPTLIQLLRDDQ---------DSVREAAVES 299 (759)
T ss_pred HHHHH-HHHHHHhhccccchhhHHHHHhhhHHHHHH---HHHHHHHhhccHHHhhhhhcch---------hhHHHHHHHH
Confidence 22222 233333333334468999999999998863 3347777888888888886542 5677777777
Q ss_pred HHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHH
Q 000133 303 LANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEA 382 (2100)
Q Consensus 303 L~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~a 382 (2100)
+.++..- ++++. +. ...+.+.+++..+.+. +.++...+..
T Consensus 300 ~~~l~~l-----------~~~~~------d~----------------------~~~~~~~l~~~~~d~~-~~v~~~~~~~ 339 (759)
T KOG0211|consen 300 LVSLLDL-----------LDDDD------DV----------------------VKSLTESLVQAVEDGS-WRVSYMVADK 339 (759)
T ss_pred HHHHHHh-----------cCCch------hh----------------------hhhhhHHHHHHhcChh-HHHHHHHhhh
Confidence 6655431 11110 00 0123334444443332 2345554444
Q ss_pred HHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCc-cchHHHHhCCcHHHHHHhhCCCCHHHHHH
Q 000133 383 LASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEG-SLWRALQGREGIQLLISLLGLSSEQQQEC 461 (2100)
Q Consensus 383 L~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~ 461 (2100)
...|+..-. .......-.++...++++...+++..++.-...++..-. .....+.....+|.+..+..+.+..++..
T Consensus 340 ~~~L~~~~~--~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a 417 (759)
T KOG0211|consen 340 FSELSSAVG--PSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSA 417 (759)
T ss_pred hhhHHHHhc--cccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHH
Confidence 444422100 011222335566667777777777777766666654422 12233444456788888888999999988
Q ss_pred HHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChh
Q 000133 462 SVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSAN 541 (2100)
Q Consensus 462 A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 541 (2100)
.+....++.-..+.. .- -..-.|.++..+++..+.++.+..+.+..+-..++.........-.+|.++.+-.+..|+
T Consensus 418 ~a~~~~~~~p~~~k~--~t-i~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wR 494 (759)
T KOG0211|consen 418 LASVITGLSPILPKE--RT-ISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWR 494 (759)
T ss_pred HhccccccCccCCcC--cC-ccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHH
Confidence 887777774322210 00 012456777788888999999988877666555555555555667789999988888899
Q ss_pred HHHHHHHHHHHHhcCCCCC-cHHHHHHH----hhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcC
Q 000133 542 GKEIAAKTLNHLIHKSDTA-TISQLTAL----LTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSS 616 (2100)
Q Consensus 542 ~~~~Aa~aL~~L~~~~~~~-~i~~L~~l----L~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s 616 (2100)
++....+.+..++....-. ..+.+..+ +.+...+++.++...+..++...+.+- .+... ++.+.....+
T Consensus 495 vr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w-~~~~~-----i~k~L~~~~q 568 (759)
T KOG0211|consen 495 VRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEW-ARLEE-----IPKLLAMDLQ 568 (759)
T ss_pred HHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcch-hHHHh-----hHHHHHHhcC
Confidence 9999988888887654311 12223333 444455788888888888877665222 12222 6777777666
Q ss_pred CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHH
Q 000133 617 TKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLV 696 (2100)
Q Consensus 617 ~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv 696 (2100)
++-..|.....++..++. -.-..+.....+|++..+..+..+.++..+|..+-.+...... ...+....|.+.
T Consensus 569 ~~y~~R~t~l~si~~la~---v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~----~~~~~~v~pll~ 641 (759)
T KOG0211|consen 569 DNYLVRMTTLFSIHELAE---VLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDE----SVRDEEVLPLLE 641 (759)
T ss_pred cccchhhHHHHHHHHHHH---HhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcch----HHHHHHHHHHHH
Confidence 677777766666665542 1222355556899999999999999999999999888543321 234455677777
Q ss_pred HHhCCCCHHHHHHHHHHHHHHh
Q 000133 697 VLAGSPVLEVAEQATCALANLI 718 (2100)
Q Consensus 697 ~ll~~~~~evr~~aa~aL~~L~ 718 (2100)
.+..+++.++|..|..|...+.
T Consensus 642 ~L~~d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 642 TLSSDQELDVRYRAILAFGSIE 663 (759)
T ss_pred HhccCcccchhHHHHHHHHHHH
Confidence 8888889999988888877664
No 167
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=0.0027 Score=79.70 Aligned_cols=400 Identities=12% Similarity=0.082 Sum_probs=238.9
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhc
Q 000133 404 LLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAA 483 (2100)
Q Consensus 404 ~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~ 483 (2100)
-++.+|.+.-+-+|..|+..+..++..-++ ++. ..+|.|++-|+++++.++.+|+.++|.|++.+|.+.-.+
T Consensus 148 Dv~tLL~sskpYvRKkAIl~lykvFLkYPe---Alr--~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L--- 219 (877)
T KOG1059|consen 148 DVFTLLNSSKPYVRKKAILLLYKVFLKYPE---ALR--PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL--- 219 (877)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHhhhH---hHh--hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc---
Confidence 477889999999999999999998876443 454 678999999999999999999999999999888764332
Q ss_pred CChHHHHHhccCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCCh-hHHHHHHHHHH--HHhcC-CC
Q 000133 484 GGIPPLVQILESG-SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSA-NGKEIAAKTLN--HLIHK-SD 558 (2100)
Q Consensus 484 g~i~~Lv~lL~~~-~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~Aa~aL~--~L~~~-~~ 558 (2100)
-|.+.++|-++ +.-+.-.....+++|+-.-|... ...+++|.+++++... .....+..++- +|... ++
T Consensus 220 --AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLg-----KKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d 292 (877)
T KOG1059|consen 220 --APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLG-----KKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSD 292 (877)
T ss_pred --cHHHHHHHhccCCCeehHHHHHHHhhccccCchhh-----hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCC
Confidence 47778887655 45555566777777775534333 3478999999988543 34444444432 33332 22
Q ss_pred C-----CcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 000133 559 T-----ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIF 633 (2100)
Q Consensus 559 ~-----~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~ 633 (2100)
. -.+..|-.++.++++..|--+.-|++.++.- ++..+++. -..++.+|.+.++.+|-.|...|..+.
T Consensus 293 ~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~kt--Hp~~Vqa~------kdlIlrcL~DkD~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 293 HSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKT--HPKAVQAH------KDLILRCLDDKDESIRLRALDLLYGMV 364 (877)
T ss_pred cHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhh--CHHHHHHh------HHHHHHHhccCCchhHHHHHHHHHHHh
Confidence 2 2355566678889999888777777766543 33323322 456788999999999999999999888
Q ss_pred cCChhhHHHHHhcCchHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCC-ChHHHHHHhCCCCHHHHHHHH
Q 000133 634 ETRKDLRESSIAVKTLWSVMKLLD-VGSECILVEASRCLAAIFLSVRENREVAAVARD-ALSPLVVLAGSPVLEVAEQAT 711 (2100)
Q Consensus 634 ~~~~~~~~~~~~~g~v~~Lv~lL~-~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~-~l~~Lv~ll~~~~~evr~~aa 711 (2100)
.. ++... ++..|+.-+. .+....+-.-+.-+..+|+... ..-+.+-. .+..|+.+.+-+..+.-..-+
T Consensus 365 sk--kNl~e-----IVk~LM~~~~~ae~t~yrdell~~II~iCS~sn---Y~~ItdFEWYlsVlveLa~l~~~~~G~~I~ 434 (877)
T KOG1059|consen 365 SK--KNLME-----IVKTLMKHVEKAEGTNYRDELLTRIISICSQSN---YQYITDFEWYLSVLVELARLEGTRHGSLIA 434 (877)
T ss_pred hh--hhHHH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhhhhh---hhhhhhHHHHHHHHHHHHhccccchhhHHH
Confidence 53 44332 3555665553 2333566666666777766542 22233323 456666776654432222233
Q ss_pred HHHHHHhcCc-HHHHHHHHcCcHHHHHHHHc---------cC--ChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHH
Q 000133 712 CALANLILDS-EVSEKAIAEEIILPATRVLC---------EG--TISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVL 779 (2100)
Q Consensus 712 ~aL~~L~~~~-~~~~~~v~~~~v~~L~~ll~---------~~--~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~ 779 (2100)
.-+.+++.+- ..+...+ .....++. .. -.++-..|+|++++.+....+. .+++.
T Consensus 435 eQi~Dv~iRV~~iR~fsV-----~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ven~---------~~~le 500 (877)
T KOG1059|consen 435 EQIIDVAIRVPSIRPFSV-----SQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVENP---------NDTLE 500 (877)
T ss_pred HHHHHHheechhhhHhHH-----HHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHhhCH---------HHHHH
Confidence 3344444332 2222111 11111111 11 1236779999999988776654 23333
Q ss_pred HHHHhhhh----cccccchHhHHHHHHHHHHcCCCCCCCCcccceeeccCCCchhhhhhhccCChhHHHHHHHHHHHH
Q 000133 780 ALVSFLES----ASGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRL 853 (2100)
Q Consensus 780 ~li~~l~s----~~~~v~~~~al~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~a~~~L~~L 853 (2100)
.+.+--.+ .-..+.......++..++.+.+-.. ...........+++.|-.......-++|+.|.+++.-+
T Consensus 501 amlrpr~~~lp~~iq~vyvqni~Klfc~~~~~~ee~~---~~e~~~sL~~~i~~~l~qf~~s~d~EvQERA~~~~~li 575 (877)
T KOG1059|consen 501 AMLRPRSDLLPGHIQAVYVQNIVKLFCSWCSQFEETK---DFEGIVSLVNLILSFLEQFSGSSDLEVQERASEVLELI 575 (877)
T ss_pred HHhcCccccCchHHHHHHHHHHHHHHHHHHhhcCccc---chhHHHHHHHHHHHHhhcccCccchhHHHHHHHHHHHH
Confidence 33321110 0134443555566666554433210 00011111122333333333445679999999988766
No 168
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.0074 Score=75.97 Aligned_cols=254 Identities=13% Similarity=0.100 Sum_probs=163.7
Q ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhh
Q 000133 142 VPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCS 221 (2100)
Q Consensus 142 vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~ 221 (2100)
.+-++.+|.+ +.++++..|...++.+....++.-+ .++|.|++=|..+|+.++..|..+++.|+..++.+.-
T Consensus 146 a~Dv~tLL~s---skpYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL 217 (877)
T KOG1059|consen 146 ADDVFTLLNS---SKPYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL 217 (877)
T ss_pred HHHHHHHHhc---CchHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc
Confidence 4556777766 4577888888888777644333322 3589999999999999999999999999998887766
Q ss_pred HHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHH
Q 000133 222 RVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMC 301 (2100)
Q Consensus 222 ~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~ 301 (2100)
.+ .|.+.++|.++.+.-+-.-....+++|+--.|--.+ .-+++|..++.+.+ .-.+...++.
T Consensus 218 ~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT~--------AmSLlYECvN 279 (877)
T KOG1059|consen 218 QL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMESTV--------AMSLLYECVN 279 (877)
T ss_pred cc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhhH--------HHHHHHHHHH
Confidence 65 688889988765434566666777777754443322 34788888886643 1223333333
Q ss_pred HHH--HhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHH
Q 000133 302 ALA--NISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERT 379 (2100)
Q Consensus 302 aL~--nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~a 379 (2100)
++. |++.|. ++.. |
T Consensus 280 TVVa~s~s~g~------------------------------------------------------------~d~~----a 295 (877)
T KOG1059|consen 280 TVVAVSMSSGM------------------------------------------------------------SDHS----A 295 (877)
T ss_pred HheeehhccCC------------------------------------------------------------CCcH----H
Confidence 221 111110 0000 0
Q ss_pred HHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHH
Q 000133 380 IEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQ 459 (2100)
Q Consensus 380 a~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~ 459 (2100)
..-| ++..|-.++.+.|+..+.-++-++..+...++.. +. .--..++++|.+.++.+|
T Consensus 296 siqL-----------------CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~---Vq--a~kdlIlrcL~DkD~SIR 353 (877)
T KOG1059|consen 296 SIQL-----------------CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKA---VQ--AHKDLILRCLDDKDESIR 353 (877)
T ss_pred HHHH-----------------HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHH---HH--HhHHHHHHHhccCCchhH
Confidence 0000 2334555667888888988999998888776542 22 123457788999999999
Q ss_pred HHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCH-HHHHHHHHHHHHHhcC
Q 000133 460 ECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSA-KAKEDSASILRNLCNH 514 (2100)
Q Consensus 460 ~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~vre~A~~aL~~L~~~ 514 (2100)
..|...|..+. +.++..+| +..|+..+...+. ..|..-+.-+-.+|..
T Consensus 354 lrALdLl~gmV--skkNl~eI-----Vk~LM~~~~~ae~t~yrdell~~II~iCS~ 402 (877)
T KOG1059|consen 354 LRALDLLYGMV--SKKNLMEI-----VKTLMKHVEKAEGTNYRDELLTRIISICSQ 402 (877)
T ss_pred HHHHHHHHHHh--hhhhHHHH-----HHHHHHHHHhccchhHHHHHHHHHHHHhhh
Confidence 99999999998 35665555 4456666654433 5565555555556643
No 169
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=0.0042 Score=70.81 Aligned_cols=347 Identities=14% Similarity=0.133 Sum_probs=222.1
Q ss_pred cCChHHHHHhhccCChhhHHHHHHHHHHhhcCCchhh--HHHHhhhcchhHHHHHHHhhcCChhhHHHHHHHHHHHhcCc
Q 000133 1271 RQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRA--LAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNT 1348 (2100)
Q Consensus 1271 ~~~i~~Lv~lL~~~~~~~~~~A~~aL~~La~~~~~~~--~~~~~v~~gal~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~ 1348 (2100)
++..|-|-.-|..++..++.-+..-++.+-.+.+++. .+..-|.+++++.++..+... |+++...+.+.+..++..+
T Consensus 81 pnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgge-ddeVAkAAiesikrialfp 159 (524)
T KOG4413|consen 81 PNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGE-DDEVAKAAIESIKRIALFP 159 (524)
T ss_pred hhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCC-cHHHHHHHHHHHHHHHhcH
Confidence 3445555556666777777778888888877766442 221115788888888888774 7899999999999999999
Q ss_pred chHHHHHhhcChHHHH--HHHhcCCchHHHHHHHHHHHhcc-cHHHHHHHHhcCCHHHHHHhhcC-CChhHHHHHHHHHH
Q 000133 1349 RIRSTVAAARCVEPLV--SLLVTEFSPAQHSVVRALDKLVD-DEQLAELVAAHGAVIPLVGLLYG-RNYMLHEAISRALV 1424 (2100)
Q Consensus 1349 ~~r~~~~~~~~i~~Lv--~lL~~~~~~~~~~A~~aL~~L~~-~~~~~~~~~~~g~i~~L~~lL~~-~~~~vr~~A~~aL~ 1424 (2100)
+....+..+....++- .+--.-++-+|...+.-+.+++. .+.........|.+..|..-|+. .|.-|+-+.++...
T Consensus 160 aaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvt 239 (524)
T KOG4413|consen 160 AALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVT 239 (524)
T ss_pred HHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHH
Confidence 8888888777665543 23333456678888888888885 77777777889999988877775 88889999999999
Q ss_pred HhhcCCchhhHHHHhcCcHHHHHHHhccCChhHHHHHHHHHHHHHhccCCcccccccCchHHHHHHhccCCC-CchhHhH
Q 000133 1425 KLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEF-GPDGQHS 1503 (2100)
Q Consensus 1425 ~La~~~~~~k~~i~~~~~i~~lv~~L~~~~~~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~~-~~~~~~~ 1503 (2100)
.++... ..++-+...|.|+.+..++...+..--+....+ ..+.+++..... +...+ .
T Consensus 240 eLaete-HgreflaQeglIdlicnIIsGadsdPfekfral--------------------mgfgkffgkeaimdvsee-a 297 (524)
T KOG4413|consen 240 ELAETE-HGREFLAQEGLIDLICNIISGADSDPFEKFRAL--------------------MGFGKFFGKEAIMDVSEE-A 297 (524)
T ss_pred HHHHHh-hhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHH--------------------HHHHHHhcchHHhhcCHH-H
Confidence 998874 788888889999999988865433222222111 111122221110 00001 1
Q ss_pred HHHHHHHhhcCCCcccccccccCCChHhhhhccCCCCHHHHHHHHHHHHHhhccccccccccccCc--hHH-HHHHhccC
Q 000133 1504 ALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQV--IGP-LIRVLGSG 1580 (2100)
Q Consensus 1504 A~~~L~nL~~~~~~~~~~~~~~~~~l~~Lv~~L~~~~~~vq~~a~~aL~~l~~~~~~~~~l~~~g~--i~~-Lv~lL~s~ 1580 (2100)
.++++-. +++.........+++.+..|..++|.|..+.+-+..+.+.|- -.. |.+..+.+
T Consensus 298 icealii-----------------aidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqn 360 (524)
T KOG4413|consen 298 ICEALII-----------------AIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQN 360 (524)
T ss_pred HHHHHHH-----------------HHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhccc
Confidence 1222211 133344556778899999999999999887666655554332 222 33333444
Q ss_pred CHHHHHHHHHHHHHhhcC---ChhHHHhccChHHHHHHhcccCCCchHHHHHHHHHHHHhhhcccchhhhcccHHHHHHH
Q 000133 1581 IHILQQRAVKALVSIALT---WPNEIAKEGGVTELSKIILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRL 1657 (2100)
Q Consensus 1581 ~~~vr~~Al~AL~~Ls~~---~~n~l~~~G~i~~Ll~lL~~~~~~~~~~l~e~a~~~L~~i~~~~~~~~~~~~v~~Lv~l 1657 (2100)
...-++.++.||.+++.. +++++.+......+-.+.++ ..+++.. -.+...+...
T Consensus 361 ahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifd------------------aaaqstk----ldPleLFlgi 418 (524)
T KOG4413|consen 361 AHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFD------------------AAAQSTK----LDPLELFLGI 418 (524)
T ss_pred ccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHH------------------HHhhccC----CChHHHHHHH
Confidence 445577888888888853 44455443233333333333 1111110 1355666777
Q ss_pred hhcCCHHHHHHHHHHHHHhccC
Q 000133 1658 LRSGSEGTVIGSLNALLVLESD 1679 (2100)
Q Consensus 1658 l~~~~~~~~~~a~~aL~~L~~~ 1679 (2100)
++...++++.++...+..+...
T Consensus 419 lqQpfpEihcAalktfTAiaaq 440 (524)
T KOG4413|consen 419 LQQPFPEIHCAALKTFTAIAAQ 440 (524)
T ss_pred HcCCChhhHHHHHHHHHHHHcC
Confidence 7777899999999888766543
No 170
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.0068 Score=76.97 Aligned_cols=393 Identities=16% Similarity=0.103 Sum_probs=210.0
Q ss_pred HHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHh
Q 000133 361 QTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQG 440 (2100)
Q Consensus 361 ~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~ 440 (2100)
.-|.++|++..+....++.-.-++-+++..+... ..|..|.-..+.+.++++-.---|..-+..+++. +
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~dvS~------~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdL--A--- 106 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKDVSL------LFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDL--A--- 106 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCcHHH------HHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCc--e---
Confidence 3466777777665433333333333344433222 2444566666677777766555555545444432 0
Q ss_pred CCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHH
Q 000133 441 REGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRA 520 (2100)
Q Consensus 441 ~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~ 520 (2100)
.=-|..+-+-|+++++-+|.-|..+|..+=- +-. .-| .+-.+-+...+.++-+|..|+.|+-.|-...++.+.
T Consensus 107 LLSIntfQk~L~DpN~LiRasALRvlSsIRv--p~I-aPI----~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~ 179 (968)
T KOG1060|consen 107 LLSINTFQKALKDPNQLIRASALRVLSSIRV--PMI-API----MLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKD 179 (968)
T ss_pred eeeHHHHHhhhcCCcHHHHHHHHHHHHhcch--hhH-HHH----HHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHH
Confidence 1135666677778887777755555554421 110 000 111222344566788888888888877766555554
Q ss_pred HHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC---CcHHHHHHHhhcCCcchHHHHHHHHHHHHhc---cC--
Q 000133 521 CVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT---ATISQLTALLTSDLPESKVYVLDALKSMLSV---VS-- 592 (2100)
Q Consensus 521 ~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~---~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~---~~-- 592 (2100)
. .+..+-.||.+.++.+...|..+.-..|-+.-. +....|..++.+-+.=-+...+..|-.-+.. .+
T Consensus 180 q-----L~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~ 254 (968)
T KOG1060|consen 180 Q-----LEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTV 254 (968)
T ss_pred H-----HHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccc
Confidence 3 234444566677777777776666665543211 2223333333221111112222222221110 00
Q ss_pred -------------chh---HHHHhhhccchHHHHH----HHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHH
Q 000133 593 -------------FSD---ILREGSAANDAVETMI----KILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSV 652 (2100)
Q Consensus 593 -------------~~~---~~~~~i~~~~~i~~Lv----~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~L 652 (2100)
.++ .++.-+....-+..|+ .++.+.++.+-.++|.+.+.++..++ ..+++.+|
T Consensus 255 ~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~-------~~~i~kaL 327 (968)
T KOG1060|consen 255 VDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ-------VTKIAKAL 327 (968)
T ss_pred cccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH-------HHHHHHHH
Confidence 000 0000001111133333 46788899999999999999996532 22568999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHH-HH-hCCCCHH-HHHHHHHHHHHHhcCcHHHHHHHH
Q 000133 653 MKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLV-VL-AGSPVLE-VAEQATCALANLILDSEVSEKAIA 729 (2100)
Q Consensus 653 v~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv-~l-l~~~~~e-vr~~aa~aL~~L~~~~~~~~~~v~ 729 (2100)
+++|++.. .++.-.++.+..++...+ +.+.+-+ .. +.+.++. ++..-...|.+|+......
T Consensus 328 vrLLrs~~-~vqyvvL~nIa~~s~~~~----------~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~----- 391 (968)
T KOG1060|consen 328 VRLLRSNR-EVQYVVLQNIATISIKRP----------TLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNIS----- 391 (968)
T ss_pred HHHHhcCC-cchhhhHHHHHHHHhcch----------hhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHH-----
Confidence 99998876 478888888888764332 2222222 21 2334443 4555666777776433322
Q ss_pred cCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcccccchHhHHHHHHHHHHcCC
Q 000133 730 EEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGG 809 (2100)
Q Consensus 730 ~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~~~~al~~L~~L~~~~~ 809 (2100)
.++.-|-.+.++.+......+.+|+.+....... ...-++..|+.++++.++.|+ .++...+-.|+....
T Consensus 392 -~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s--------v~~tCL~gLv~Llsshde~Vv-~eaV~vIk~Llq~~p 461 (968)
T KOG1060|consen 392 -EILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS--------VTDTCLNGLVQLLSSHDELVV-AEAVVVIKRLLQKDP 461 (968)
T ss_pred -HHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc--------hhhHHHHHHHHHHhcccchhH-HHHHHHHHHHHhhCh
Confidence 3566677777777776666666777666543332 224567778888887766666 666665555554444
No 171
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.99 E-value=0.011 Score=72.68 Aligned_cols=261 Identities=13% Similarity=0.121 Sum_probs=171.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcc---CccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHH
Q 000133 402 KRLLVGLITMATNEVQEELVRALLKLCNN---EGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKW 478 (2100)
Q Consensus 402 i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~---~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~ 478 (2100)
+..++.+|+++++.+|.+|+...+.|..- +.+ .+.+...|. .|.+-|....+++.-....+++.+.+...-...
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e-~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGE-TKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcch-HHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence 44567788999999999998887776532 111 123333333 366778888888887777777777543322222
Q ss_pred HHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhh---HHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhc
Q 000133 479 AITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDI---RACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIH 555 (2100)
Q Consensus 479 ~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~---~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~ 555 (2100)
..--.|.+|.|.-.|++...+++++....++.+|..+++. |+-+ ..---|++.|++.+.++++.|..+++.++.
T Consensus 683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWM---RIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWM---RICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 2223578999999999999999999999999999876652 1111 012357888899999999999999999876
Q ss_pred CCCC-CcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 000133 556 KSDT-ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFE 634 (2100)
Q Consensus 556 ~~~~-~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~ 634 (2100)
.-.| ..+..|+.-|+..+...|....-+++.++.... ....+|.|..=-..+...+|.-...+++.++.
T Consensus 760 aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg----------pfsVlP~lm~dY~TPe~nVQnGvLkam~fmFe 829 (975)
T COG5181 760 AIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCG----------PFSVLPTLMSDYETPEANVQNGVLKAMCFMFE 829 (975)
T ss_pred hcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC----------chhhHHHHHhcccCchhHHHHhHHHHHHHHHH
Confidence 4322 333334444444444455554445554443221 11235666555556778888888888888775
Q ss_pred CChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc
Q 000133 635 TRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVR 679 (2100)
Q Consensus 635 ~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~ 679 (2100)
.-.. ...=.-..+.|.|-..+.++++..+..|+..+..|+-+.+
T Consensus 830 yig~-~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~ 873 (975)
T COG5181 830 YIGQ-ASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP 873 (975)
T ss_pred HHHH-HHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence 4211 1111122468888899999999999999999998876543
No 172
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=97.97 E-value=7e-06 Score=87.22 Aligned_cols=88 Identities=31% Similarity=0.487 Sum_probs=68.8
Q ss_pred CCCceeeeeccchhhhhh--CCCcceEEEecCC--C---CCccccccccCCCccccccceeccccC-CCCCeEEEEeecC
Q 000133 1978 PGTLVVIIKRGNNMKQSV--GNPSVYCKLTLGN--T---PPRQTKIVSTGPNPEWEESFAWSFEIP-PKGQKLHISCKNK 2049 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~~--~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 2049 (2100)
.|.|+|+|.+..|+...- |....|.++.+.. + ..++|+|+.++.||+|||.|.|.+... .....|++.|+++
T Consensus 14 ~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~ 93 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNK 93 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEEC
Confidence 378999999999998643 3466788887753 2 257899999999999999999887532 2344999999999
Q ss_pred CccCCccc-ceEEEEEe
Q 000133 2050 SKMGKSSF-GKVTIQID 2065 (2100)
Q Consensus 2050 ~~~~~~~~-~~~~~~~~ 2065 (2100)
+.|+++.+ |.|.|.+.
T Consensus 94 ~~~~~~~~iG~v~l~~~ 110 (138)
T cd08408 94 RKMKRKEMIGWFSLGLN 110 (138)
T ss_pred CCCCCCcEEEEEEECCc
Confidence 88876654 99888765
No 173
>PRK14707 hypothetical protein; Provisional
Probab=97.96 E-value=0.31 Score=68.81 Aligned_cols=584 Identities=17% Similarity=0.131 Sum_probs=284.9
Q ss_pred HHHHHHHHHhccCCCCcccccchhccCChHH--HHHHhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHH
Q 000133 114 AAAKTIYAVSQGGAKDYVGSKIFSTEGVVPV--LWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILV 191 (2100)
Q Consensus 114 ~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~--L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv 191 (2100)
+|+.|+..|+. +...-..+...|.-|. |...+..+..... ....+.++-+.+...+ ..... ...--+..++
T Consensus 97 ac~~a~~wia~----~~~~~~~~~~l~~~~~al~~n~~sk~~~~~~-c~~a~a~i~~~~~~~~-~~~~~-l~~~~~~lll 169 (2710)
T PRK14707 97 ACMEAIAWIAG----ELTQADDLVGLGGYPSALFLNAFSKNLDSGR-CERAVARLARHLRRED-KARQT-LNAQNISLAL 169 (2710)
T ss_pred HHHHHHHHHHH----hhcCcchhhhccchhHHHHHHHHhcCCCchH-HHHHHHHHHHHhcccc-chhhh-hccccHHHHH
Confidence 45667777665 1111222445555443 4444444433322 3334444444443222 11111 1112234444
Q ss_pred HhHcc--CCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhC
Q 000133 192 KLLTL--GQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGS 269 (2100)
Q Consensus 192 ~lL~s--~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~ 269 (2100)
...+. ++.+.+..+..+-..++..+ ..+..+ +..+|..++.-+..=++..-...|+..|...-...+..+.. .+.
T Consensus 170 NafSKw~~~~~c~~aa~~la~~~~~~d-~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~-~~~ 246 (2710)
T PRK14707 170 NAFSKWSDNPDCQAVAPRFAALVASDD-RLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNE-LKP 246 (2710)
T ss_pred HHhhcCCCCchHHHHHHHHHHHhcCCh-hhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHh-CCh
Confidence 44443 45566666655554454443 233333 66777777777766444334556666665544434333333 344
Q ss_pred CChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccC
Q 000133 270 NGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAE 349 (2100)
Q Consensus 270 g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~ 349 (2100)
.++...+..|..=. +....++++.+|..--.. ++..
T Consensus 247 q~va~~lN~lsKwp--------~~~~C~~a~~~lA~rl~~-------------~~~l----------------------- 282 (2710)
T PRK14707 247 QELGNALNALSKWA--------DTPVCAAAASALAERLVD-------------DPGL----------------------- 282 (2710)
T ss_pred HHHHHHHHHHhcCC--------CchHHHHHHHHHHHHHhh-------------hHHH-----------------------
Confidence 45665566554321 123444555554421110 1110
Q ss_pred CCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHH-HHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 000133 350 STKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALA-SLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLC 428 (2100)
Q Consensus 350 ~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~-~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~ 428 (2100)
+..+++..+...|-.+-+-.... +-..|+..|+ .|.+.++.++.+...+.-..|-.+-+-++..+.+.|+.+|..-.
T Consensus 283 -~~al~~q~vanalNalSKwpd~~-vc~~Aa~~la~rl~~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl 360 (2710)
T PRK14707 283 -RKALDPINVTQALNALSKWADLP-VCAEAAIALAERLADDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERL 360 (2710)
T ss_pred -HHhcCHHHHHHHHhhhhcCCCch-HHHHHHHHHHHHHhccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHh
Confidence 11234444444444444433333 4444555555 45788888877766666666666666666667777777777644
Q ss_pred ccCccchHHHHhCCcHHHHHHhhC-CCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccC-CCHHHHHHHHH
Q 000133 429 NNEGSLWRALQGREGIQLLISLLG-LSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILES-GSAKAKEDSAS 506 (2100)
Q Consensus 429 ~~~~~~~~~i~~~g~i~~Lv~lL~-s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~vre~A~~ 506 (2100)
...+..++.+- ..++...+..+. =++..+...|+..|..=..++++.+..+-. .++..+++.|.. ++..+...++.
T Consensus 361 ~~d~~l~~~l~-~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~-Q~van~lnalsKWPd~~~C~~aa~ 438 (2710)
T PRK14707 361 VADPELRKDLE-PQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDP-QGVSNALNALAKWPDLPICGQAVS 438 (2710)
T ss_pred ccCHhhhcccc-hhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcch-hhHHHHHHHhhcCCcchhHHHHHH
Confidence 44466555553 345555555554 344444445555555433356666655544 456666665543 56667777777
Q ss_pred HHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHH-HHHhcCC------CCCcHHHHHHHhhcCCcchHHH
Q 000133 507 ILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTL-NHLIHKS------DTATISQLTALLTSDLPESKVY 579 (2100)
Q Consensus 507 aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL-~~L~~~~------~~~~i~~L~~lL~~~~~~~~~~ 579 (2100)
+|.--..++.+.+..+--.++...|=.+-+=++..+-..++..| ..|+... ++..+..-+..|. .-|+ +..
T Consensus 439 ~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLS-K~Pd-~~~ 516 (2710)
T PRK14707 439 ALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLS-KWPD-TPI 516 (2710)
T ss_pred HHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhh-cCCC-cHH
Confidence 77666556677776654444333333333334444444444444 4555422 1111111122221 1122 123
Q ss_pred HHHHHHHHHhccCchhHHHHhhhccchHHHHHH-HhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhc-
Q 000133 580 VLDALKSMLSVVSFSDILREGSAANDAVETMIK-ILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLD- 657 (2100)
Q Consensus 580 a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~-lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~- 657 (2100)
+.+++..++.....+......+. ...+..+++ +-+.++....+.|+..|..+....+..+.. ...-.|..+++.|+
T Consensus 517 c~~A~~~lA~rl~~~~~l~~~~~-~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~-L~aq~Vs~llNaLSK 594 (2710)
T PRK14707 517 CAEAASALAERVVDELQLRKAFD-AHQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPKD-LHRQGVVIVLNALSK 594 (2710)
T ss_pred HHHHHHHHHHHhccchhhhhhhh-hHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHh-hhhhHHHHHHHhhcc
Confidence 34444444332222221222221 122334444 446677777777777888776654333333 33456777777773
Q ss_pred CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHH-HHhCCCCHHHHHHHHHHHHHHh-cCcHHHHHHHHcCcHHH
Q 000133 658 VGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLV-VLAGSPVLEVAEQATCALANLI-LDSEVSEKAIAEEIILP 735 (2100)
Q Consensus 658 ~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv-~ll~~~~~evr~~aa~aL~~L~-~~~~~~~~~v~~~~v~~ 735 (2100)
-++....+.++..|..-....++. +..+ ....+..++ .+-+.+..+.-+.++..|..-. .+......+-.-++-..
T Consensus 595 WP~~~aC~~Aa~~LA~~l~~~~~l-r~~l-~~q~lan~lNALSKWP~s~~C~~Aa~rLA~rl~~~~~l~~~fnaQ~vAn~ 672 (2710)
T PRK14707 595 WPDTAVCAEAVNALAERLVDEPDL-RKEL-DPVDVTNVLNALSKWPGTEVCAEVARLLAGRLVGDRLLRKTFNSLDVANA 672 (2710)
T ss_pred CCCcHHHHHHHHHHHHHhccChhh-hhhc-cHHHHHHHHhhhhcCCCchHHHHHHHHHHHHhhhchhhHhhcchHHHHHH
Confidence 334344455555554444443222 1212 223334444 4455566666677777766543 33333333333344444
Q ss_pred HHHHHccCChhHHHHHHHHHHHHHhc
Q 000133 736 ATRVLCEGTISGKTLAAAAIARLLHS 761 (2100)
Q Consensus 736 L~~ll~~~~~~~~~~Aa~aL~~l~~~ 761 (2100)
|-.+.+=.+.+.-+.|+..|...+..
T Consensus 673 LNALSKWPe~e~Cr~Aa~~LA~rLa~ 698 (2710)
T PRK14707 673 LNALSKWPDTPVCAAAAGGMAERLAA 698 (2710)
T ss_pred HHhhhcCCCchHHHHHHHHHHHHHhc
Confidence 44555555666656677677655544
No 174
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.94 E-value=0.0053 Score=81.35 Aligned_cols=560 Identities=14% Similarity=0.107 Sum_probs=310.8
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHhhcchh-hhhhhhhcCChHHHHHhhccCChhhHHHHHHHHHHhhcCCchhhHHH
Q 000133 1232 AVSQLVAVLRLGGRGARYSAAKALESLFSADH-IRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAV 1310 (2100)
Q Consensus 1232 al~~Li~~L~~~~~~~r~~Aa~aL~~L~~~~~-~~~~i~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~La~~~~~~~~~~ 1310 (2100)
.+..++..++..+...|.++..-+.+++.... .+. ....+|-+-+.. +...+...+++.-++.+...-....+.
T Consensus 83 ~ia~l~~e~~~~di~~r~~~~~~l~~~a~~~~~~~t---r~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~~~~~~- 157 (759)
T KOG0211|consen 83 PIAVLIDELSNTDIQLRLNSGRKLSNLALALGVERT---RLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVGGPEYA- 157 (759)
T ss_pred cHHHHhhccCchhhhhhhhhhccccchhhhcccchh---hhhhhhHHHHhc-cchhHHHHHHHHHhcccchhccchhHH-
Confidence 34555555555555566666655666554221 111 344567776666 555667777777777766432222221
Q ss_pred HhhhcchhHHHHHHHhhcCChhhHHHHHHHHHHHhcC-cchHHHHHhhcChHHHHHHHhcCCc-hHHHHHHHHHHHhcc-
Q 000133 1311 ADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGN-TRIRSTVAAARCVEPLVSLLVTEFS-PAQHSVVRALDKLVD- 1387 (2100)
Q Consensus 1311 ~~v~~gal~~L~~lL~~~~~~~~~~~a~~~L~~L~~~-~~~r~~~~~~~~i~~Lv~lL~~~~~-~~~~~A~~aL~~L~~- 1387 (2100)
..+.+..+.+.......+++.+...+..+... +.-. ...-..+++..+..++. ..|..++........
T Consensus 158 -----~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~----~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~ 228 (759)
T KOG0211|consen 158 -----HMLLPPLELLATVEETGVREKAVESLLKVAVGLPKEK----LREHLVPLLKRLATGDWFQSRLSACGLFGKLYVS 228 (759)
T ss_pred -----HHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHH----HHHHHHHHHHHccchhhhhcchhhhhhhHHhccC
Confidence 33444444443333445677777666555332 2110 11112233333333322 234555555555442
Q ss_pred -c-HHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCchhhHHHHhcCcHHHHHHHhccCChhHHHHHHHHH
Q 000133 1388 -D-EQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELL 1465 (2100)
Q Consensus 1388 -~-~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k~~i~~~~~i~~lv~~L~~~~~~~~~~aa~lL 1465 (2100)
. ...+ ...-+..-++-++.++.||+.+..=++.+++.- .......+.++..+.+..++.+.++..+.+.+
T Consensus 229 ~~~~~vk-----~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~---~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~ 300 (759)
T KOG0211|consen 229 LPDDAVK-----RELRPIVQSLCQDDTPMVRRAVASNLGNIAKVL---ESEIVKSEVLPTLIQLLRDDQDSVREAAVESL 300 (759)
T ss_pred CChHHHH-----HHHHHHHHhhccccchhhHHHHHhhhHHHHHHH---HHHHHHhhccHHHhhhhhcchhhHHHHHHHHH
Confidence 1 2222 222344445556888999999999999988764 23677788999999999999999999998888
Q ss_pred HHHHhccCCcccccccCchHHHHHHhccCCCCchhHhHHHHHHHHhhcCCCcccccccccCCChHhhhhccCCCCHHHHH
Q 000133 1466 RILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQ 1545 (2100)
Q Consensus 1466 ~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~~~~~~~~l~~Lv~~L~~~~~~vq~ 1545 (2100)
..+...-.... .......+.++....+++ +.++....+...-+...-+. ......-+++....+++...+++.
T Consensus 301 ~~l~~l~~~~~-d~~~~~~~~l~~~~~d~~--~~v~~~~~~~~~~L~~~~~~----~~~~~~~~~~~~~l~~~~~~e~r~ 373 (759)
T KOG0211|consen 301 VSLLDLLDDDD-DVVKSLTESLVQAVEDGS--WRVSYMVADKFSELSSAVGP----SATRTQLVPPVSNLLKDEEWEVRY 373 (759)
T ss_pred HHHHHhcCCch-hhhhhhhHHHHHHhcChh--HHHHHHHhhhhhhHHHHhcc----ccCcccchhhHHHHhcchhhhhhH
Confidence 77765443221 334456777777777544 44444444444444222111 124455688899999999999999
Q ss_pred HHHHHHHHhhccc--cccccccccCchHHHHHHhccCCHHHHHHHHHHHHHhhcCChh-HHHhccChHHHHHHhcccCCC
Q 000133 1546 LAAELLSHLLLEE--QLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPN-EIAKEGGVTELSKIILQADPS 1622 (2100)
Q Consensus 1546 ~a~~aL~~l~~~~--~~~~~l~~~g~i~~Lv~lL~s~~~~vr~~Al~AL~~Ls~~~~n-~l~~~G~i~~Ll~lL~~~~~~ 1622 (2100)
+++.-...+.... +....+.....++.+..+..+.++.+|.+.+.-...++..-+. .-+.+ ..+.++..+.+.++.
T Consensus 374 a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~-llp~~~~~l~de~~~ 452 (759)
T KOG0211|consen 374 AIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISE-LLPLLIGNLKDEDPI 452 (759)
T ss_pred HhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccc-cChhhhhhcchhhHH
Confidence 9999988886632 2334455556678888888999999999998888887644332 11111 244555555555544
Q ss_pred chHHHHHHHHHHHHhhhcccch----hhhcccHHHHHHHhhcCCHHHHHHHHHHHHHhccCChhhHHHHHHcccHHHHHH
Q 000133 1623 LPHALWESAASVLSSILQFSSE----FYLEVPVAVLVRLLRSGSEGTVIGSLNALLVLESDDGTSAEAMAESGAIEALLE 1698 (2100)
Q Consensus 1623 ~~~~l~e~a~~~L~~i~~~~~~----~~~~~~v~~Lv~ll~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Li~ 1698 (2100)
++..+. ..++.+-...+. ...+.-+|.++.+.....+.++.+.+..+-.++.... ..+.... ...|+.
T Consensus 453 V~lnli----~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~-~~~l~~ 524 (759)
T KOG0211|consen 453 VRLNLI----DKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEK-LAELLR 524 (759)
T ss_pred HHHhhH----HHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHH-HHHHHH
Confidence 443332 233332221111 1222346666666666666777777766655543332 1111111 222222
Q ss_pred -HHhc--cCcHHHHHHHHHHHhc---CchhhhhhhchhhhhhhhhhccChhhHHHHHHHHHHHHhcchhhhhhHHHhhhh
Q 000133 1699 -LLRS--HQCEETAARLLEVLLN---NGKIRESKATKSAILPLSQYLLDPQTQAQQARLLATLALGDLFQNEGLARSADA 1772 (2100)
Q Consensus 1699 -lL~s--~~~~~~a~~lL~~L~~---~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~~~~A~~~l~~~~~~~~l~~~~~~ 1772 (2100)
.+.+ ..+++.+++-+..|+. ..-.+. ..+..+.....++....+++-+.++..++..--++ ++ .
T Consensus 525 ~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~-----~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~e-i~----~ 594 (759)
T KOG0211|consen 525 TWLPDHVYSIREAAARNLPALVETFGSEWARL-----EEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQE-IT----C 594 (759)
T ss_pred hhhhhhHHHHHHHHHHHhHHHHHHhCcchhHH-----HhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccH-HH----H
Confidence 2222 1367777666666654 111111 11222222222222333333223333333222222 22 1
Q ss_pred hchHHHHHHhhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhhCCHHHHHHHhCCCCccchHHHHHHHHH
Q 000133 1773 VSACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFVKL 1843 (2100)
Q Consensus 1773 ~~a~~~Lv~lL~~~~~~~~~~~A~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~s~~~~~~~~aa~~l~~ 1843 (2100)
.-.++++..+..+. ...+|-+++..|..+... -.....+.-+.+.+..+..+.+.+.+..|-.+...
T Consensus 595 ~~Llp~~~~l~~D~-vanVR~nvak~L~~i~~~---L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~ 661 (759)
T KOG0211|consen 595 EDLLPVFLDLVKDP-VANVRINVAKHLPKILKL---LDESVRDEEVLPLLETLSSDQELDVRYRAILAFGS 661 (759)
T ss_pred HHHhHHHHHhccCC-chhhhhhHHHHHHHHHhh---cchHHHHHHHHHHHHHhccCcccchhHHHHHHHHH
Confidence 12366677766664 899999999999999832 22356666778888888887777777655555444
No 175
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.84 E-value=0.00014 Score=72.46 Aligned_cols=131 Identities=21% Similarity=0.220 Sum_probs=110.7
Q ss_pred ccHHHHHHhhc-CCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHH
Q 000133 400 EAKRLLVGLIT-MATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKW 478 (2100)
Q Consensus 400 g~i~~Lv~lL~-~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~ 478 (2100)
+.+..|+.-.+ ..+.+.++....-|+|.+.+ +.++..+.+..++..+++-+..++..+.+.+.+.|||+|. ++.+..
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~-d~~n~~ 93 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL-DKTNAK 93 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc-ChHHHH
Confidence 34455655444 56889999999999999998 7889999999999999999999999999999999999995 788999
Q ss_pred HHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhh
Q 000133 479 AITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLK 536 (2100)
Q Consensus 479 ~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~ 536 (2100)
.|.+++|+|.++..+.++...+.-.++.++..|+...-..|..+.. |+.++.++
T Consensus 94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~----p~Vv~~v~ 147 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS----PAVVRTVQ 147 (173)
T ss_pred HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc----HHHHHHHH
Confidence 9999999999999999999999999999999998765566666544 55555544
No 176
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=97.84 E-value=2.4e-05 Score=78.32 Aligned_cols=91 Identities=29% Similarity=0.507 Sum_probs=74.2
Q ss_pred CceeeeeccchhhhhhC--CCcceEEEecCCC--CCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccC-C
Q 000133 1980 TLVVIIKRGNNMKQSVG--NPSVYCKLTLGNT--PPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMG-K 2054 (2100)
Q Consensus 1980 ~~~~~~~r~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 2054 (2100)
+|.|+|+...++...-. ....++++..+.. ..++|+++.++.+|.|++.|.|.+..+. ++.+.|+|+++..+| .
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~-~~~l~i~v~~~~~~~~~ 79 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPE-LAELEIEVYDKDRFGRD 79 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcc-cCEEEEEEEecCCccCC
Confidence 36788888887766543 4678889998766 5899999999999999999999887444 999999999988886 6
Q ss_pred cccceEEEEEeeEEeec
Q 000133 2055 SSFGKVTIQIDRVVMLG 2071 (2100)
Q Consensus 2055 ~~~~~~~~~~~~~~~~~ 2071 (2100)
..+|.+.|.++++..+.
T Consensus 80 ~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 80 DFIGQVTIPLSDLLLGG 96 (101)
T ss_pred ceeEEEEEEHHHcccCc
Confidence 67799999988875543
No 177
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.018 Score=65.96 Aligned_cols=279 Identities=15% Similarity=0.149 Sum_probs=165.4
Q ss_pred HHHHHHhHccCCHHHHHHHHHHHHHHhhcCcc----hhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHh
Q 000133 187 IDILVKLLTLGQSSTQAHVCFLLACMMEEDVS----VCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDA 262 (2100)
Q Consensus 187 v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~----~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~ 262 (2100)
.|.|-.-|..++..++.-+|+.+.++..+... ....+++.+..+.++..+...++ ++...|...+..++. .+..
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd-eVAkAAiesikrial-fpaa 161 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD-EVAKAAIESIKRIAL-FPAA 161 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH-HHHHHHHHHHHHHHh-cHHH
Confidence 44555556678899999999999888855442 23344688999999999998664 799999999999987 5666
Q ss_pred HHHHHhCCChHHHHHh-hcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHH
Q 000133 263 RREIAGSNGIPAMINA-TIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASAL 341 (2100)
Q Consensus 263 ~~~i~~~g~i~~Lv~l-l~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll 341 (2100)
-.+|.+..-.+.+-.. +. -.++.-.+......+..+..
T Consensus 162 leaiFeSellDdlhlrnla--------akcndiaRvRVleLIieifS--------------------------------- 200 (524)
T KOG4413|consen 162 LEAIFESELLDDLHLRNLA--------AKCNDIARVRVLELIIEIFS--------------------------------- 200 (524)
T ss_pred HHHhcccccCChHHHhHHH--------hhhhhHHHHHHHHHHHHHHh---------------------------------
Confidence 5566555444332111 00 00111111111122222221
Q ss_pred HHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhc--CCCHHHHHH
Q 000133 342 MIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLIT--MATNEVQEE 419 (2100)
Q Consensus 342 ~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~--~~~~~v~~~ 419 (2100)
-+.+...-+..++....|..-++.+.+..|+..+.+-.-.|+...+.+.++.+.|.+..+-..+. +.+|--...
T Consensus 201 ----iSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfr 276 (524)
T KOG4413|consen 201 ----ISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFR 276 (524)
T ss_pred ----cCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHH
Confidence 11111111233455666666666666777777777777778777788899999998888877775 345544555
Q ss_pred HHHHHHHhhccCccc---hHHHHhC--CcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCC--hHHHH-H
Q 000133 420 LVRALLKLCNNEGSL---WRALQGR--EGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGG--IPPLV-Q 491 (2100)
Q Consensus 420 A~~aL~~L~~~~~~~---~~~i~~~--g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~--i~~Lv-~ 491 (2100)
+......+..+..-+ -+++.+. -+|....+.+++.+++.++.|..+++.+.+ +.+..+.+...|- ...++ +
T Consensus 277 almgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGS-nteGadlllkTgppaaehllar 355 (524)
T KOG4413|consen 277 ALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGS-NTEGADLLLKTGPPAAEHLLAR 355 (524)
T ss_pred HHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccC-CcchhHHHhccCChHHHHHHHH
Confidence 555555444331111 1222221 134455667788999999999999999986 6666666655542 22222 2
Q ss_pred hccCCCHHHHHHHHHHHHHHhc
Q 000133 492 ILESGSAKAKEDSASILRNLCN 513 (2100)
Q Consensus 492 lL~~~~~~vre~A~~aL~~L~~ 513 (2100)
........-++.+..+|.+++.
T Consensus 356 afdqnahakqeaaihaLaaIag 377 (524)
T KOG4413|consen 356 AFDQNAHAKQEAAIHALAAIAG 377 (524)
T ss_pred HhcccccchHHHHHHHHHHhhc
Confidence 2222223345566677777764
No 178
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.83 E-value=0.001 Score=74.55 Aligned_cols=258 Identities=18% Similarity=0.186 Sum_probs=172.1
Q ss_pred HHHHHHHHhcCCH--HHHHHHHHHHHHhhcchhhhhhhhhcCChHHHHHhhccCChhhHHHHHHHHHHhhcCCchhhHHH
Q 000133 1233 VSQLVAVLRLGGR--GARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAV 1310 (2100)
Q Consensus 1233 l~~Li~~L~~~~~--~~r~~Aa~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~La~~~~~~~~~~ 1310 (2100)
++.+..+|-+.+. ..|+.| |++| ..+...+.|..+...+.+.+.-.++..++.|++..
T Consensus 5 i~~i~~~L~~~s~~l~~r~rA---Lf~L-------r~l~~~~~i~~i~ka~~d~s~llkhe~ay~LgQ~~---------- 64 (289)
T KOG0567|consen 5 IETIGNILVNKSQPLQNRFRA---LFNL-------RNLLGPAAIKAITKAFIDDSALLKHELAYVLGQMQ---------- 64 (289)
T ss_pred HHHHHHHHcCccHHHHHHHHH---HHhh-------hccCChHHHHHHHHhcccchhhhccchhhhhhhhc----------
Confidence 4455555555432 345555 4443 12334445777777777776666777888888877
Q ss_pred HhhhcchhHHHHHHHhhc-CChhhHHHHHHHHHHHhcCcchHHHHHhhcChHHHHHHHhcCCchHHHHHHHHHHHhcccH
Q 000133 1311 ADVEMNAVDVLCRILSSN-CSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDE 1389 (2100)
Q Consensus 1311 ~~v~~gal~~L~~lL~~~-~~~~~~~~a~~~L~~L~~~~~~r~~~~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~ 1389 (2100)
...+++.|...|.+. ...-++.++..+|+.+. . +...+.+-+..+++...+++.+..++.++-+..
T Consensus 65 ---~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~---------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~ 131 (289)
T KOG0567|consen 65 ---DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D---------PESLEILTKYIKDPCKEVRETCELAIKRLEWKD 131 (289)
T ss_pred ---cchhhHHHHHHhcccccchHHHHHHHHHHHhhc-c---------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhh
Confidence 456788888888765 33456778888887765 2 224455555566777777887777777665211
Q ss_pred HHHH----HH---------HhcCCHHHHHHhhcCCCh--hHHHHHHHHHHHhhcCCchhhHHHHhcCcHHHHHHHhccCC
Q 000133 1390 QLAE----LV---------AAHGAVIPLVGLLYGRNY--MLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAP 1454 (2100)
Q Consensus 1390 ~~~~----~~---------~~~g~i~~L~~lL~~~~~--~vr~~A~~aL~~La~~~~~~k~~i~~~~~i~~lv~~L~~~~ 1454 (2100)
.... .. ...+-+..|-..|.+.+. --|..|.-.|.+++... .|..+++-+..++
T Consensus 132 ~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~Ee-----------aI~al~~~l~~~S 200 (289)
T KOG0567|consen 132 IIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEE-----------AINALIDGLADDS 200 (289)
T ss_pred ccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHH-----------HHHHHHHhcccch
Confidence 1000 00 011224445444443332 34667777888887775 7888999999888
Q ss_pred hhHHHHHHHHHHHHHhccCCcccccccCchHHHHHHhccCCCCchhHhHHHHHHHHhhcCCCcccccccccCCChHhhhh
Q 000133 1455 DFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIP 1534 (2100)
Q Consensus 1455 ~~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~~~~~~~~l~~Lv~ 1534 (2100)
.-.+++++-.++.|- ... .++.|...|.+..+.+-+++.|.++|+.+ .....++.|..
T Consensus 201 alfrhEvAfVfGQl~---s~~-------ai~~L~k~L~d~~E~pMVRhEaAeALGaI------------a~e~~~~vL~e 258 (289)
T KOG0567|consen 201 ALFRHEVAFVFGQLQ---SPA-------AIPSLIKVLLDETEHPMVRHEAAEALGAI------------ADEDCVEVLKE 258 (289)
T ss_pred HHHHHHHHHHHhhcc---chh-------hhHHHHHHHHhhhcchHHHHHHHHHHHhh------------cCHHHHHHHHH
Confidence 888999886654433 222 47888888887667799999999999984 77788999999
Q ss_pred ccCCCCHHHHHHHHHHHHHhhc
Q 000133 1535 LLDSPAPAVQQLAAELLSHLLL 1556 (2100)
Q Consensus 1535 ~L~~~~~~vq~~a~~aL~~l~~ 1556 (2100)
++.++.+.|++.+.-+|.-+.-
T Consensus 259 ~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 259 YLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred HcCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999998887643
No 179
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=97.80 E-value=2.7e-05 Score=80.79 Aligned_cols=88 Identities=18% Similarity=0.312 Sum_probs=64.4
Q ss_pred CCCceeeeeccchhhhh--hCCCcceEEEec---C-CCCCccccccccCC-CccccccceeccccCCCCC-eEEEEeecC
Q 000133 1978 PGTLVVIIKRGNNMKQS--VGNPSVYCKLTL---G-NTPPRQTKIVSTGP-NPEWEESFAWSFEIPPKGQ-KLHISCKNK 2049 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~---~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 2049 (2100)
+|.|||+|++..|++.. .+...-+.++.+ | .-..|+|+|++.+. +|.|||.|.|++.. +.-+ .|.|+|+++
T Consensus 13 ~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~-~~~~v~l~v~v~d~ 91 (135)
T cd08692 13 NSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQ-QEHGIQFLIKLYSR 91 (135)
T ss_pred CCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCc-hhheeEEEEEEEeC
Confidence 68899999999999874 122234554433 2 22467899999885 69999999998874 3334 889999999
Q ss_pred CccCCcc-cceEEEEEee
Q 000133 2050 SKMGKSS-FGKVTIQIDR 2066 (2100)
Q Consensus 2050 ~~~~~~~-~~~~~~~~~~ 2066 (2100)
+.+|++- +|+|.+-++.
T Consensus 92 ~~~~~n~~IG~v~lG~~~ 109 (135)
T cd08692 92 SSVRRKHFLGQVWISSDS 109 (135)
T ss_pred CCCcCCceEEEEEECCcc
Confidence 8886654 6999887764
No 180
>PF05536 Neurochondrin: Neurochondrin
Probab=97.79 E-value=0.016 Score=75.91 Aligned_cols=238 Identities=19% Similarity=0.194 Sum_probs=155.7
Q ss_pred ccHHHHHHhcCCCCCCCCchHHHHHHHHHHhhcCchh---hhHHHhcCcHHHHHHHHhcCCc--c-hHHHH---HHHHHH
Q 000133 1145 KAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSN---KIVMVEAGALEALTKYLSLGPQ--D-ATEEA---ATDLLG 1215 (2100)
Q Consensus 1145 ~~i~~Lv~~l~~~~~~~~~~~~Al~~L~~la~~~~~~---r~~i~e~G~i~~L~~~L~s~~~--~-~~~~~---~~~ll~ 1215 (2100)
..+...+.+|+...|.+ +..++-+++.+.+.++.+ +..+.++=+.+.|-++|+++.. + .+..+ +-.++.
T Consensus 5 ~~l~~c~~lL~~~~D~~--rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~ 82 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTE--RFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLA 82 (543)
T ss_pred HHHHHHHHHhccCCcHH--HHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHH
Confidence 45667788888765544 588999999999887743 4457788888999999998521 1 12223 333555
Q ss_pred HhhcCHHHHhhhcccCcHHHHHHHHhcCCH-HHHHHHHHHHHHhhcchhhhhhhhhcCChHHHHHhhccCChhhHHHHHH
Q 000133 1216 ILFSSAEIRRHESAFAAVSQLVAVLRLGGR-GARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIA 1294 (2100)
Q Consensus 1216 ~l~~~~~~~~~~~~~~al~~Li~~L~~~~~-~~r~~Aa~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~A~~ 1294 (2100)
.+..+++......-.+.||.|+.++...++ ..-..+...|..++..++.+..+.+.|+++.|.+.+.. .......|+.
T Consensus 83 ~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~ 161 (543)
T PF05536_consen 83 AFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALN 161 (543)
T ss_pred HHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHH
Confidence 555778776655556789999999988877 77788888899999999999999999999999999987 4456677999
Q ss_pred HHHHhhcCCchhhHHHH-hhhcchhHHHHHHHhhcCChhhHHHHHHHHHHHhcCcchH--HHHHhhcChHHHHHHH----
Q 000133 1295 ALVRLLSENPSRALAVA-DVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIR--STVAAARCVEPLVSLL---- 1367 (2100)
Q Consensus 1295 aL~~La~~~~~~~~~~~-~v~~gal~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~r--~~~~~~~~i~~Lv~lL---- 1367 (2100)
.|.++..........-. .--..+++.+-+.+... ....+=+....|..+....+.. ...........+...+
T Consensus 162 lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~-~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL 240 (543)
T PF05536_consen 162 LLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSF-HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL 240 (543)
T ss_pred HHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence 99888764331110000 00012445555555543 4456666677777776665321 2222334444444433
Q ss_pred hc-CCchHHHHHHHHHHHhc
Q 000133 1368 VT-EFSPAQHSVVRALDKLV 1386 (2100)
Q Consensus 1368 ~~-~~~~~~~~A~~aL~~L~ 1386 (2100)
++ ..+..|..|+.....+.
T Consensus 241 ~sr~~~~~R~~al~Laa~Ll 260 (543)
T PF05536_consen 241 QSRLTPSQRDPALNLAASLL 260 (543)
T ss_pred hcCCCHHHHHHHHHHHHHHH
Confidence 33 44566666665555544
No 181
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=97.76 E-value=2.6e-05 Score=79.86 Aligned_cols=83 Identities=14% Similarity=0.321 Sum_probs=62.1
Q ss_pred eeccchhh--hhhCCCcceEEEecCCC-----CCccccccccCCCccccccceeccccCC---CCCeEEEEeecCCccCC
Q 000133 1985 IKRGNNMK--QSVGNPSVYCKLTLGNT-----PPRQTKIVSTGPNPEWEESFAWSFEIPP---KGQKLHISCKNKSKMGK 2054 (2100)
Q Consensus 1985 ~~r~~~~~--~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 2054 (2100)
+++..++. ..+|.+.-++++.+++. ..++|+|++++.+|+|+ .|.+..+... .+++|.|+|++++.||+
T Consensus 6 ~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~~ 84 (110)
T cd04047 6 QFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSGK 84 (110)
T ss_pred EEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCCC
Confidence 34566664 33555667777776543 25789999999999999 6776544322 26799999999999987
Q ss_pred -cccceEEEEEeeEE
Q 000133 2055 -SSFGKVTIQIDRVV 2068 (2100)
Q Consensus 2055 -~~~~~~~~~~~~~~ 2068 (2100)
+.+|+++++++++.
T Consensus 85 d~~iG~~~~~l~~l~ 99 (110)
T cd04047 85 HDLIGEFETTLDELL 99 (110)
T ss_pred CcEEEEEEEEHHHHh
Confidence 55699999999998
No 182
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=97.76 E-value=5.5e-05 Score=80.13 Aligned_cols=104 Identities=20% Similarity=0.273 Sum_probs=76.8
Q ss_pred cCCCceeeeeccchhhhhhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEe-ecCCcc---
Q 000133 1977 LPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISC-KNKSKM--- 2052 (2100)
Q Consensus 1977 i~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--- 2052 (2100)
+--+|.|.|.-..++-- -...+|.+++|...-=.|+|++++.||.|+|.|.|..- || =..+.|.+ |..+++
T Consensus 9 ~~~sL~v~V~EAk~Lp~---~~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~-~~-~~~l~v~v~k~~~~~~~~ 83 (146)
T cd04013 9 TENSLKLWIIEAKGLPP---KKRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNL-PP-VSVITVNLYRESDKKKKK 83 (146)
T ss_pred EEEEEEEEEEEccCCCC---cCCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCC-Cc-ccEEEEEEEEccCccccc
Confidence 33456777776666532 24689999997654337999999999999999999533 33 46688888 444444
Q ss_pred -CCcccceEEEEEeeEEeecccccceeecCCCCC
Q 000133 2053 -GKSSFGKVTIQIDRVVMLGAVAGEYTLLPESKS 2085 (2100)
Q Consensus 2053 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2085 (2100)
|..-+|+|+|++++|.......+-|.|.+.+++
T Consensus 84 ~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~ 117 (146)
T cd04013 84 DKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGN 117 (146)
T ss_pred cCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCC
Confidence 446779999999999987778888999888433
No 183
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.015 Score=74.87 Aligned_cols=472 Identities=15% Similarity=0.116 Sum_probs=284.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHH
Q 000133 402 KRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAIT 481 (2100)
Q Consensus 402 i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~ 481 (2100)
.+-++..+...|-+.++.+-.-+.|-+...+.. ..+++..+++=.+++++.+|..|.+.++.+.- +.....
T Consensus 51 F~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~-----a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v--~~i~ey-- 121 (734)
T KOG1061|consen 51 FPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL-----AILAVNTFLKDCEDPNPLIRALALRTMGCLRV--DKITEY-- 121 (734)
T ss_pred hHHHHhhcccCCchHHHHHHHHHHHhhccCchH-----HHhhhhhhhccCCCCCHHHHHHHhhceeeEee--hHHHHH--
Confidence 455677777888888888877888888776653 12566777777778899999877777766642 222222
Q ss_pred hcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC--
Q 000133 482 AAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT-- 559 (2100)
Q Consensus 482 ~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~-- 559 (2100)
...+|.+.+++.++.+|..++....++-.. ....+.+.|.++.|-+++.+.++.+...|..+|..+.....+
T Consensus 122 ---~~~Pl~~~l~d~~~yvRktaa~~vakl~~~---~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~ 195 (734)
T KOG1061|consen 122 ---LCDPLLKCLKDDDPYVRKTAAVCVAKLFDI---DPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVN 195 (734)
T ss_pred ---HHHHHHHhccCCChhHHHHHHHHHHHhhcC---ChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCC
Confidence 567899999999999999999999888754 344566799999999999999999999999999998765431
Q ss_pred ------CcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 000133 560 ------ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIF 633 (2100)
Q Consensus 560 ------~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~ 633 (2100)
..+..++..+.....--+.. .|..++.-.+.++ + .....+..+...|.+.+..+.-.+...+.++.
T Consensus 196 ~~~l~~~~~~~lL~al~ec~EW~qi~---IL~~l~~y~p~d~--~---ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~ 267 (734)
T KOG1061|consen 196 LLELNPQLINKLLEALNECTEWGQIF---ILDCLAEYVPKDS--R---EAEDICERLTPRLQHANSAVVLSAVKVILQLV 267 (734)
T ss_pred cccccHHHHHHHHHHHHHhhhhhHHH---HHHHHHhcCCCCc--h---hHHHHHHHhhhhhccCCcceEeehHHHHHHHH
Confidence 22333444443332222333 3333333332222 0 01123666777888888888888888888888
Q ss_pred cCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHh--CC-CCHHHHHHH
Q 000133 634 ETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLA--GS-PVLEVAEQA 710 (2100)
Q Consensus 634 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll--~~-~~~evr~~a 710 (2100)
..-++ .........-++|+.++...+ +++.-+.+-+.-+..+.++..+. -+..+ +. ...-++..-
T Consensus 268 ~~~~~-~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~----------~~~~Ff~kynDPiYvK~eK 335 (734)
T KOG1061|consen 268 KYLKQ-VNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKV----------EIKVFFCKYNDPIYVKLEK 335 (734)
T ss_pred HHHHH-HHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHh----------HhHeeeeecCCchhhHHHH
Confidence 76444 333444578899999998877 77777776666554444322111 11111 11 222256666
Q ss_pred HHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhccc
Q 000133 711 TCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASG 790 (2100)
Q Consensus 711 a~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~ 790 (2100)
...+..++.+....+ ++.-|..+...-+.+..+.+.+|+.++..-... ..+++..++++++...+
T Consensus 336 leil~~la~~~nl~q------vl~El~eYatevD~~fvrkaIraig~~aik~e~---------~~~cv~~lLell~~~~~ 400 (734)
T KOG1061|consen 336 LEILIELANDANLAQ------VLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQ---------SNDCVSILLELLETKVD 400 (734)
T ss_pred HHHHHHHhhHhHHHH------HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhh---------hhhhHHHHHHHHhhccc
Confidence 666666654433222 444444444445556788999999988743332 26678888888887666
Q ss_pred ccchHhHHHHHHHHHHcCCCCCCCCcccceeeccCCCchhhhhhhccCChhHHHHHHHHHHHHhcCCcccchhccccccc
Q 000133 791 SVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASG 870 (2100)
Q Consensus 791 ~v~~~~al~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~g~~~~~~~~ 870 (2100)
-++ .++...+..+.+..++ ....+-...+..++ .-.+|..+..-.+++.++... |..
T Consensus 401 yvv-qE~~vvi~dilRkyP~-----~~~~vv~~l~~~~~------sl~epeak~amiWilg~y~~~--------i~~--- 457 (734)
T KOG1061|consen 401 YVV-QEAIVVIRDILRKYPN-----KYESVVAILCENLD------SLQEPEAKAALIWILGEYAER--------IEN--- 457 (734)
T ss_pred cee-eehhHHHHhhhhcCCC-----chhhhhhhhccccc------ccCChHHHHHHHHHHhhhhhc--------cCc---
Confidence 666 7788888888766554 11122233333333 224688888888899888321 111
Q ss_pred chHHHHHHHhhcCCcceecchhhHHHHHhhhchhhHHhhhhc-cccchhhHHHHHHHHhhhcCCCCcCCCCChhHHHHHh
Q 000133 871 CISSIARRVISCTNPKVKIGGAALLICAAKVNHQRIVEDLNH-SNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAISIY 949 (2100)
Q Consensus 871 ~~~~~~~~~l~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~Lv~~l~~~~~~~~~~~~~~~~~~~~~l 949 (2100)
...+++-|++---.+. +.-|+-.+... +...-. .+.+...+..+... .-.+ +.++|.+..++.--
T Consensus 458 -a~elL~~f~en~~dE~---~~Vql~LLta~-----ik~Fl~~p~~tq~~l~~vL~~---~~~d--~~~~dlrDr~l~Y~ 523 (734)
T KOG1061|consen 458 -ALELLESFLENFKDET---AEVQLELLTAA-----IKLFLKKPTETQELLQGVLPL---ATAD--TDNPDLRDRGLIYW 523 (734)
T ss_pred -HHHHHHHHHhhcccch---HHHHHHHHHHH-----HHHHhcCCccHHHHHHHHHhh---hhcc--ccChhhhhhHHHHH
Confidence 2234555544432222 22233333333 221111 11223333333222 2211 24678888888888
Q ss_pred hhhcccccCCC
Q 000133 950 RYTSEEARNGG 960 (2100)
Q Consensus 950 ~~l~~~~~~~~ 960 (2100)
+.|++-.+.+.
T Consensus 524 RlLs~~~~~a~ 534 (734)
T KOG1061|consen 524 RLLSEDPLIAK 534 (734)
T ss_pred HHhhcCHHHHH
Confidence 88775444333
No 184
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=97.65 E-value=7.4e-05 Score=74.58 Aligned_cols=94 Identities=23% Similarity=0.404 Sum_probs=75.4
Q ss_pred ceeeeeccchhhh--hhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccC-Cccc
Q 000133 1981 LVVIIKRGNNMKQ--SVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMG-KSSF 2057 (2100)
Q Consensus 1981 ~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 2057 (2100)
|.|.|++..++.. ..+..+.++.+.+.+....+|++...+.+|.|++.|.|.+.. +.++.++|++++++.++ ...+
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~-~~~~~l~i~v~~~~~~~~~~~i 79 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLD-PESDTLTVEVWDKDRFSKDDFL 79 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccC-CCCCEEEEEEEecCCCCCCcee
Confidence 4678888888765 333467889999987677889999999999999999998884 37889999999999887 6667
Q ss_pred ceEEEEEeeEE-eeccccc
Q 000133 2058 GKVTIQIDRVV-MLGAVAG 2075 (2100)
Q Consensus 2058 ~~~~~~~~~~~-~~~~~~~ 2075 (2100)
|++.+++..+. ..+....
T Consensus 80 g~~~~~l~~l~~~~~~~~~ 98 (102)
T cd00030 80 GEVEIPLSELLDSGKEGEL 98 (102)
T ss_pred EEEEEeHHHhhhcCCcCcc
Confidence 99999999887 3333333
No 185
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.63 E-value=0.0013 Score=84.39 Aligned_cols=243 Identities=16% Similarity=0.097 Sum_probs=179.4
Q ss_pred hhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHH-HHhcCC--CCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccC
Q 000133 516 EDIRACVESADAVPALLWLLKNGSANGKEIAAKTLN-HLIHKS--DTATISQLTALLTSDLPESKVYVLDALKSMLSVVS 592 (2100)
Q Consensus 516 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~-~L~~~~--~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~ 592 (2100)
...+...++.|+...|+.+...+.+..+-.+..+|. .+...+ ....++++..++..+..... -.++|-.+...++
T Consensus 494 K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~~~v~~~~~s~~~~d~~~~e--n~E~L~altnLas 571 (748)
T KOG4151|consen 494 KYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGERSYEVVKPLDSALHNDEKGLE--NFEALEALTNLAS 571 (748)
T ss_pred HHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCchhhhhhhhcchhhhhHHHHH--HHHHHHHhhcccC
Confidence 456677788999999999999999999999999987 443333 23667777777665553322 2344444554555
Q ss_pred chhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh-cCchHHHHHhhcCCCHHHHHHHHHHH
Q 000133 593 FSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIA-VKTLWSVMKLLDVGSECILVEASRCL 671 (2100)
Q Consensus 593 ~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~-~g~v~~Lv~lL~~~~~~v~~~aa~aL 671 (2100)
.++..+..+....+++.+-.++...++..|+.+...+.||.+++.-+...+.. ...++.+...+....+....++++++
T Consensus 572 ~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~ 651 (748)
T KOG4151|consen 572 ISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGAL 651 (748)
T ss_pred cchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccc
Confidence 44444444666777888888899999999999999999999984444444444 34788888888888888888999888
Q ss_pred HHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHh-cCcHHHHHHHHcCcHHHHHHHHccCChhHHHH
Q 000133 672 AAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLI-LDSEVSEKAIAEEIILPATRVLCEGTISGKTL 750 (2100)
Q Consensus 672 ~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~-~~~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~ 750 (2100)
..++.-....+........+...++.++.+++.++++.......|+. .+.+.+..++....++.+.++-+-.-...++.
T Consensus 652 a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~a~~~~~ 731 (748)
T KOG4151|consen 652 AAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNRAPKRED 731 (748)
T ss_pred cchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhhhhhhhh
Confidence 86655433222213445678899999999999999999999999966 45778888888889988888777755567888
Q ss_pred HHHHHHHHHh
Q 000133 751 AAAAIARLLH 760 (2100)
Q Consensus 751 Aa~aL~~l~~ 760 (2100)
++.+|.....
T Consensus 732 ~~~~l~~a~~ 741 (748)
T KOG4151|consen 732 AAPCLSAAEE 741 (748)
T ss_pred hhhHHHHHHH
Confidence 8888876653
No 186
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=0.00046 Score=85.43 Aligned_cols=242 Identities=15% Similarity=0.100 Sum_probs=155.2
Q ss_pred HHHHHhcCCchHHHHHHHHHHHhcccHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCchhhH-HH----
Q 000133 1363 LVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKL-EM---- 1437 (2100)
Q Consensus 1363 Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k~-~i---- 1437 (2100)
|..+..+.|..+|.+|+++|..|...-..- .-+....++.+.+.+..||.+|+..+.-.+.-.|--.+ ..
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~-----~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~k 277 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFKLS-----KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEK 277 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhccccccc-----HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhh
Confidence 556667788899999999988887411111 11356788999999999999999988877765421111 11
Q ss_pred HhcCcHHHHHHHhccCChhHHHHHHHHHHHHHhccCCcccccccCchHHHHHHhccCCCCchhHhHHHHHHHHhh-----
Q 000133 1438 VKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNIL----- 1512 (2100)
Q Consensus 1438 ~~~~~i~~lv~~L~~~~~~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~~~~~~~~~A~~~L~nL~----- 1512 (2100)
....+...+.+.+.+.+-.+|-.|+++|++..+.+... ..+.|=.-+.+..--+-..+...+.++.=.
T Consensus 278 l~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~-------i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsG 350 (823)
T KOG2259|consen 278 LKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEI-------IQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSG 350 (823)
T ss_pred hHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHH-------HHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccC
Confidence 22457778888888888888999999987776555422 111111111110000111111222222111
Q ss_pred ----cC----CCcccccccccCCChHhhhhccCCCCHHHHHHHHHHHHHhhcc-ccccccccccCchHHHHHHhccCCHH
Q 000133 1513 ----EH----PQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLE-EQLQKDPVTQQVIGPLIRVLGSGIHI 1583 (2100)
Q Consensus 1513 ----~~----~~~~~~~~~~~~~~l~~Lv~~L~~~~~~vq~~a~~aL~~l~~~-~~~~~~l~~~g~i~~Lv~lL~s~~~~ 1583 (2100)
.+ ..+.....+...|+-+.++.-|.++.-+||.+|+..+..|+.+ +.+. ..++..|+.|+++..++
T Consensus 351 k~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA-----~~aldfLvDMfNDE~~~ 425 (823)
T KOG2259|consen 351 KEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA-----VRALDFLVDMFNDEIEV 425 (823)
T ss_pred ccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH-----HHHHHHHHHHhccHHHH
Confidence 00 0111223357888899999999999999999999999999873 3332 25678999999999999
Q ss_pred HHHHHHHHHHHhhcCChhHHHhccChHHHHHHhcccCCCch
Q 000133 1584 LQQRAVKALVSIALTWPNEIAKEGGVTELSKIILQADPSLP 1624 (2100)
Q Consensus 1584 vr~~Al~AL~~Ls~~~~n~l~~~G~i~~Ll~lL~~~~~~~~ 1624 (2100)
+|..|+.+|..|+..- -+++..++.+++.|.+....++
T Consensus 426 VRL~ai~aL~~Is~~l---~i~eeql~~il~~L~D~s~dvR 463 (823)
T KOG2259|consen 426 VRLKAIFALTMISVHL---AIREEQLRQILESLEDRSVDVR 463 (823)
T ss_pred HHHHHHHHHHHHHHHh---eecHHHHHHHHHHHHhcCHHHH
Confidence 9999999999998762 2333345566666665443333
No 187
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.59 E-value=0.0041 Score=69.95 Aligned_cols=255 Identities=18% Similarity=0.136 Sum_probs=170.0
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHhhcCHHHHhhhcccCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcchhhhhhhhh
Q 000133 1191 LEALTKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESA 1270 (2100)
Q Consensus 1191 i~~L~~~L~s~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~al~~Li~~L~~~~~~~r~~Aa~aL~~L~~~~~~~~~i~~ 1270 (2100)
++++.+.|... ...+.....++.+ .. .+...+++..+.....+++..-+...|..|+. +..
T Consensus 5 i~~i~~~L~~~-s~~l~~r~rALf~----Lr----~l~~~~~i~~i~ka~~d~s~llkhe~ay~LgQ----------~~~ 65 (289)
T KOG0567|consen 5 IETIGNILVNK-SQPLQNRFRALFN----LR----NLLGPAAIKAITKAFIDDSALLKHELAYVLGQ----------MQD 65 (289)
T ss_pred HHHHHHHHcCc-cHHHHHHHHHHHh----hh----ccCChHHHHHHHHhcccchhhhccchhhhhhh----------hcc
Confidence 45666666652 3333333333332 11 23345668888888888877778888888876 466
Q ss_pred cCChHHHHHhhccCCh--hhHHHHHHHHHHhhcCCchhhHHHHhhhcchhHHHHHHHhhcCChhhHHHHHHHHHHHhcCc
Q 000133 1271 RQAVQPLVEILNTGLE--REQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNT 1348 (2100)
Q Consensus 1271 ~~~i~~Lv~lL~~~~~--~~~~~A~~aL~~La~~~~~~~~~~~~v~~gal~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~ 1348 (2100)
..++|.|+..|.+.+. -+|+.|+.+|+++. ....++.|.++.++ +-..+++.+..++..+-+-.
T Consensus 66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~-------------~~~~~~~l~k~~~d-p~~~v~ETc~lAi~rle~~~ 131 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-------------DPESLEILTKYIKD-PCKEVRETCELAIKRLEWKD 131 (289)
T ss_pred chhhHHHHHHhcccccchHHHHHHHHHHHhhc-------------chhhHHHHHHHhcC-CccccchHHHHHHHHHHHhh
Confidence 7789999999987654 45667999999988 23467777787744 44556655544444332211
Q ss_pred c----------hHHHH---HhhcChHHHHHHHhcCCc--hHHHHHHHHHHHhcccHHHHHHHHhcCCHHHHHHhhcCCCh
Q 000133 1349 R----------IRSTV---AAARCVEPLVSLLVTEFS--PAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNY 1413 (2100)
Q Consensus 1349 ~----------~r~~~---~~~~~i~~Lv~lL~~~~~--~~~~~A~~aL~~L~~~~~~~~~~~~~g~i~~L~~lL~~~~~ 1413 (2100)
. ...+. ...+.+..|-..|.+.+. -.|+.|..+|.++..++ +|..|.+-+..++.
T Consensus 132 ~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~Ee----------aI~al~~~l~~~Sa 201 (289)
T KOG0567|consen 132 IIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEE----------AINALIDGLADDSA 201 (289)
T ss_pred ccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHH----------HHHHHHHhcccchH
Confidence 1 00111 123346666666666543 45777888888876433 47788999998899
Q ss_pred hHHHHHHHHHHHhhcCCchhhHHHHhcCcHHHHHHHhcc--CChhHHHHHHHHHHHHHhccCCcccccccCchHHHHHHh
Q 000133 1414 MLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHE--APDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLL 1491 (2100)
Q Consensus 1414 ~vr~~A~~aL~~La~~~~~~k~~i~~~~~i~~lv~~L~~--~~~~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll 1491 (2100)
-.|..+.-+|++|-... +|+.+.+.|.+ +++-+|++++++|+-+++. .+++.|...+
T Consensus 202 lfrhEvAfVfGQl~s~~-----------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e----------~~~~vL~e~~ 260 (289)
T KOG0567|consen 202 LFRHEVAFVFGQLQSPA-----------AIPSLIKVLLDETEHPMVRHEAAEALGAIADE----------DCVEVLKEYL 260 (289)
T ss_pred HHHHHHHHHHhhccchh-----------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH----------HHHHHHHHHc
Confidence 99999999999998775 89999999975 4667999999998544432 2577777777
Q ss_pred ccCCCCchhHhHHHHHHHHh
Q 000133 1492 TRSEFGPDGQHSALQVLVNI 1511 (2100)
Q Consensus 1492 ~~~~~~~~~~~~A~~~L~nL 1511 (2100)
.++. +.+.+.+.-+|-.+
T Consensus 261 ~D~~--~vv~esc~valdm~ 278 (289)
T KOG0567|consen 261 GDEE--RVVRESCEVALDML 278 (289)
T ss_pred CCcH--HHHHHHHHHHHHHH
Confidence 7655 66677766666554
No 188
>PRK14707 hypothetical protein; Provisional
Probab=97.49 E-value=1.4 Score=62.83 Aligned_cols=366 Identities=18% Similarity=0.132 Sum_probs=187.1
Q ss_pred cHHHHHHHHhcCCcchHHHHHHHHH-HHhhcCHHHHhhhcccCcHHHHHHHHh-cCCHHHHHHHHHHHH-Hhhcchhhhh
Q 000133 1190 ALEALTKYLSLGPQDATEEAATDLL-GILFSSAEIRRHESAFAAVSQLVAVLR-LGGRGARYSAAKALE-SLFSADHIRN 1266 (2100)
Q Consensus 1190 ~i~~L~~~L~s~~~~~~~~~~~~ll-~~l~~~~~~~~~~~~~~al~~Li~~L~-~~~~~~r~~Aa~aL~-~L~~~~~~~~ 1266 (2100)
-+...++.||.=+.+.....+...| .-+..++..+..+ +..-|.-.+..|. -.+...-..|+.+|. .|......|.
T Consensus 794 ~vAn~LNALSKWPe~~~Cr~AA~~LA~rLa~dp~Lr~af-~AQ~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~e~~LR~ 872 (2710)
T PRK14707 794 EMTNALNALSKWPDTPACAAAASALAARVADDPRLREAF-DVQHVATVLNAMSKWPDNAVCAAAAGAMAERLADEPELRH 872 (2710)
T ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHHHHhcChhHHHhc-CHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcChhhhh
Confidence 4555667777765554444444333 3366777776553 4444555555554 333334444555554 3333333333
Q ss_pred hhhhcCChHHHHHhhcc-CChhhHHHHHHHH-HHhhcCCchhhHHHHhhhcchhHHHHHHHhhcCCh-hhHHHHHHHHHH
Q 000133 1267 AESARQAVQPLVEILNT-GLEREQHAAIAAL-VRLLSENPSRALAVADVEMNAVDVLCRILSSNCSM-ELKGDAAELCGV 1343 (2100)
Q Consensus 1267 ~i~~~~~i~~Lv~lL~~-~~~~~~~~A~~aL-~~La~~~~~~~~~~~~v~~gal~~L~~lL~~~~~~-~~~~~a~~~L~~ 1343 (2100)
.+ .+..+...+..|.. +.....+.|+.+| ..|..+..-+..+ ++..+...+.-|+.-++. ..+..+..+..-
T Consensus 873 aL-~~QevantLNALSKWPd~~~C~~AA~aLA~rL~~d~~Lrqal----~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~r 947 (2710)
T PRK14707 873 TL-TAHGVVIVLNALSKWPNVPVCAAAASALAERLADEPELRKAL----SAHRVATALNALSKWPDIPVCATAASALAER 947 (2710)
T ss_pred cc-chHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhcCHHHHhhc----cHHHHHHHHhhhccCCCchHHHHHHHHHHHH
Confidence 33 23445555555543 3344455555555 4455343333333 455555556666554444 455555566777
Q ss_pred HhcCcchHHHHHhhcChHHHHHHHhcCCchHHHHHHHHHHH-hcccHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHH
Q 000133 1344 LFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDK-LVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRA 1422 (2100)
Q Consensus 1344 L~~~~~~r~~~~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~-L~~~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~a 1422 (2100)
|..+++.+..+......+.|-.+-+=++...-..|+.+|.. |..+...+..+-..|+-..|-.+=+=++...-+.|...
T Consensus 948 La~d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~ 1027 (2710)
T PRK14707 948 LSDDPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAERLVDEPALRNALDPIGMANALNALSKWLQMPVCAATVEA 1027 (2710)
T ss_pred hccChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHhccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHH
Confidence 88888888777666655555555555666555555555544 44677777666555555555555443444444555555
Q ss_pred HHHhhcCCchhhHHHHhcCcHHHHHHHhcc-CChhHHHHHHHHH-HHHHhccCCcccccccCchHHHHHHhccCCCCchh
Q 000133 1423 LVKLGKDRPSCKLEMVKAGVIESVLDILHE-APDFLCSAFAELL-RILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDG 1500 (2100)
Q Consensus 1423 L~~La~~~~~~k~~i~~~~~i~~lv~~L~~-~~~~~~~~aa~lL-~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~~~~~~ 1500 (2100)
|..--..++.....| +.-.+...+.-|+. ++.+.+..++..| ..|......+... ....+...+.-|.+=.+.++.
T Consensus 1028 LA~rLa~ep~L~~am-daQ~lan~LNALSKWPde~~Cr~Aa~aLA~rL~~d~~Lr~Al-~aQ~vAN~LNaLSKWP~~~~C 1105 (2710)
T PRK14707 1028 LAARLSNDPGLCKAL-SSQGLTTVLNALCKWPEMPVCLAAASALAERLSDDLVLRNAL-DSQGFGNALNALSKWPDSPVC 1105 (2710)
T ss_pred HHHHhccCHhhhhhc-chHHHHHHHHhhccCCCchhHHHHHHHHHHHhhccHHHHHhh-chHHHHHHHHHHhcCCCcHHH
Confidence 554433334444333 22245566666664 2333444444443 2233333322111 222344444445433233444
Q ss_pred HhHHHHHHHHhhcCCCcccccccccCCChHhhhhccC--CCCHHHHHHHHHHHHHhhccccccccccc
Q 000133 1501 QHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLD--SPAPAVQQLAAELLSHLLLEEQLQKDPVT 1566 (2100)
Q Consensus 1501 ~~~A~~~L~nL~~~~~~~~~~~~~~~~~l~~Lv~~L~--~~~~~vq~~a~~aL~~l~~~~~~~~~l~~ 1566 (2100)
+..+......|..+..-... .+.+.+..+++.|+ .+.+..+..+...=+++..+++.+..+..
T Consensus 1106 r~Aa~~LA~rL~~~~~l~~~---fd~q~vA~~LNALSKWp~~~~cr~Aa~~LA~RL~~d~~Lr~a~~~ 1170 (2710)
T PRK14707 1106 AAAASALAKRLTDDAGLRHV---FDPINVSQALNALSKWPGTQACESAIDVLAATLANAPGLRNALSA 1170 (2710)
T ss_pred HHHHHHHHHHhccccchhcc---CCHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccchhhhhhcCH
Confidence 44344444444333333333 23334555555554 55666777777777778777777766654
No 189
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.47 E-value=0.00056 Score=68.29 Aligned_cols=123 Identities=19% Similarity=0.223 Sum_probs=105.0
Q ss_pred hHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHH
Q 000133 359 VEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRAL 438 (2100)
Q Consensus 359 i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i 438 (2100)
-+.-|+.-+...++...|+.+..-|++.+-+|.+-..+.+.+++...+..+..++....+.+..+|.|+|.+ ..+.+.|
T Consensus 17 Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d-~~n~~~I 95 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD-KTNAKFI 95 (173)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC-hHHHHHH
Confidence 344456666666776678888888999999999999999999999999999999999999999999999998 5668899
Q ss_pred HhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHh
Q 000133 439 QGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITA 482 (2100)
Q Consensus 439 ~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~ 482 (2100)
++++|+|..+..+.++...+...|+.+|..|+-.....+..+..
T Consensus 96 ~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~ 139 (173)
T KOG4646|consen 96 REALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS 139 (173)
T ss_pred HHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc
Confidence 99999999999999999999999999999998655555555543
No 190
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=1 Score=60.59 Aligned_cols=214 Identities=16% Similarity=0.134 Sum_probs=129.9
Q ss_pred CchHHHHHHHhcCCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhhcCCC-HHHHHHHHHHHHHHhccCCCCccc
Q 000133 54 QAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSS-AEGQIAAAKTIYAVSQGGAKDYVG 132 (2100)
Q Consensus 54 g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~~Ls~~~~~~~~~ 132 (2100)
+.+..|++.|++.+..+|-.||.-++.+.+-.+ .-+....+...+.++.-.+ ...=+-|+-||.+++..+.--
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp---~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLl--- 414 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP---PELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLL--- 414 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc---HHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcc---
Confidence 456778888899999999999999999985444 1222244555566555433 445557788899998743300
Q ss_pred ccchhccCChHHHHHHhhcc-----CCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHH-----HhHccCCHHHH
Q 000133 133 SKIFSTEGVVPVLWEQLKNG-----LKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILV-----KLLTLGQSSTQ 202 (2100)
Q Consensus 133 ~~~~~~~g~vp~L~~lL~~~-----~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv-----~lL~s~~~~v~ 202 (2100)
.-.-..++|.++.-|.-. ...+..|+..++..+|.++...+.. .+ .+.++.|. ..+=+++..+|
T Consensus 415 --ps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~---~l-~p~l~~L~s~LL~~AlFDrevncR 488 (1133)
T KOG1943|consen 415 --PSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPS---DL-KPVLQSLASALLIVALFDREVNCR 488 (1133)
T ss_pred --hHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChh---hh-hHHHHHHHHHHHHHHhcCchhhHh
Confidence 011245677777666432 2234458888999999987544322 11 11222222 23334666789
Q ss_pred HHHHHHHHHHhhcCcch-------------------------hhHHh-hhchHHHHHHHhcCC----CCHHHHHHHHHHH
Q 000133 203 AHVCFLLACMMEEDVSV-------------------------CSRVL-AADATKQLLKLLGSG----NEASVRAEAAGAL 252 (2100)
Q Consensus 203 ~~a~~~L~~L~~~~~~~-------------------------~~~i~-~~g~i~~Lv~lL~~~----~~~~v~~~Aa~aL 252 (2100)
+.|..+|..+....+.. +..+. -+|-...+++-+-.. =|..+|+.++++|
T Consensus 489 RAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL 568 (1133)
T KOG1943|consen 489 RAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYAL 568 (1133)
T ss_pred HHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHH
Confidence 99998888777443211 00010 123344445444332 2578999999999
Q ss_pred HHhhcCChHhHHHHHhCCChHHHHHhhcCCC
Q 000133 253 KSLSDHCKDARREIAGSNGIPAMINATIAPS 283 (2100)
Q Consensus 253 ~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~ 283 (2100)
.+|+...++ ....+.+|+++....+++
T Consensus 569 ~~Ls~~~pk----~~a~~~L~~lld~~ls~~ 595 (1133)
T KOG1943|consen 569 HKLSLTEPK----YLADYVLPPLLDSTLSKD 595 (1133)
T ss_pred HHHHHhhHH----hhcccchhhhhhhhcCCC
Confidence 999875443 334567888888877665
No 191
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.038 Score=71.58 Aligned_cols=323 Identities=15% Similarity=0.134 Sum_probs=212.6
Q ss_pred HHHHHHHHHHHhhccCccchHHHH----hCCcHHHHHHhhCC-CCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHH
Q 000133 416 VQEELVRALLKLCNNEGSLWRALQ----GREGIQLLISLLGL-SSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLV 490 (2100)
Q Consensus 416 v~~~A~~aL~~L~~~~~~~~~~i~----~~g~i~~Lv~lL~s-~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv 490 (2100)
-...+..+|.|+...+++....+. --|-.+.+..++.. .++.++.-|..++.-++. +.+....+...+.+..|+
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLL 1819 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHH
Confidence 346789999999988885432221 12455777777765 467888888888888874 788889999999888888
Q ss_pred HhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhc-CChhHHHHHHHHHHHHhcCCCC---------C
Q 000133 491 QILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKN-GSANGKEIAAKTLNHLIHKSDT---------A 560 (2100)
Q Consensus 491 ~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~Aa~aL~~L~~~~~~---------~ 560 (2100)
++|. +-+..|+.+..+|+.|+. +++.-+...+.|++..+.+++-. .++..+..++..|+.|..+.-. +
T Consensus 1820 ~lLH-S~PS~R~~vL~vLYAL~S-~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~k 1897 (2235)
T KOG1789|consen 1820 TLLH-SQPSMRARVLDVLYALSS-NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIK 1897 (2235)
T ss_pred HHHh-cChHHHHHHHHHHHHHhc-CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHH
Confidence 8885 467889999999999998 57777788889999988888765 5677888899999999765421 1
Q ss_pred cHHH-HHHHhhcC-------------Ccc------hHHHHHHHHHHHHhcc-----C-------chh-------------
Q 000133 561 TISQ-LTALLTSD-------------LPE------SKVYVLDALKSMLSVV-----S-------FSD------------- 595 (2100)
Q Consensus 561 ~i~~-L~~lL~~~-------------~~~------~~~~a~~aL~~l~~~~-----~-------~~~------------- 595 (2100)
.+|. ++..++|+ +|+ .+......+..+..-. . .++
T Consensus 1898 FLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~a 1977 (2235)
T KOG1789|consen 1898 FLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECA 1977 (2235)
T ss_pred hchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcc
Confidence 1111 22223322 222 1111111122211100 0 000
Q ss_pred ----HHHHhhhc------------cchHHHHHHHhcCCCHH--HHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhc
Q 000133 596 ----ILREGSAA------------NDAVETMIKILSSTKEE--TQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLD 657 (2100)
Q Consensus 596 ----~~~~~i~~------------~~~i~~Lv~lL~s~~~~--~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~ 657 (2100)
..|.-+.. .+-+..+.++|...+++ +-.--..++..|.+..+...+.+---|-+|.++....
T Consensus 1978 VGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~ 2057 (2235)
T KOG1789|consen 1978 VGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMC 2057 (2235)
T ss_pred cchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHH
Confidence 00000000 11233444455443332 2333344555666666777777777899999999997
Q ss_pred CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcC--cHHHHHHHHcCcHHH
Q 000133 658 VGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD--SEVSEKAIAEEIILP 735 (2100)
Q Consensus 658 ~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~--~~~~~~~v~~~~v~~ 735 (2100)
..+...-+.|.+.|-.|+.+. .+-.++..-..+.++++.|+... ..---|+.+|..++.+ .+...|....+.+|.
T Consensus 2058 ~~n~s~P~SaiRVlH~Lsen~--~C~~AMA~l~~i~~~m~~mkK~~-~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpy 2134 (2235)
T KOG1789|consen 2058 LQNTSAPRSAIRVLHELSENQ--FCCDAMAQLPCIDGIMKSMKKQP-SLMGLAAEALKRLMKRNTGELVAQMLKCGLVPY 2134 (2235)
T ss_pred hcCCcCcHHHHHHHHHHhhcc--HHHHHHhccccchhhHHHHHhcc-hHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHH
Confidence 666566688899999886543 45555777788888888887533 3445899999999844 556778889999999
Q ss_pred HHHHHccCC
Q 000133 736 ATRVLCEGT 744 (2100)
Q Consensus 736 L~~ll~~~~ 744 (2100)
|.+++...+
T Consensus 2135 LL~LLd~~t 2143 (2235)
T KOG1789|consen 2135 LLQLLDSST 2143 (2235)
T ss_pred HHHHhcccc
Confidence 999998754
No 192
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.059 Score=69.60 Aligned_cols=179 Identities=18% Similarity=0.153 Sum_probs=115.4
Q ss_pred CCchHHHHHHHhcCCHHHHHHHHH-HHHhhhccchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcc
Q 000133 53 SQAVPVLVSLLRSGSLAVKIQAAT-VLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYV 131 (2100)
Q Consensus 53 ~g~v~~L~~lL~~~~~~v~~~aa~-~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~ 131 (2100)
.|.++.+-+-|.+....-|.++++ +++.+.-+.+ -.+-.|.+++.+...|.+.+.-+--=|.+-+.+.
T Consensus 12 k~ei~elks~l~s~~~~kr~~a~kkvIa~Mt~G~D------vSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~----- 80 (734)
T KOG1061|consen 12 KGEIPELKSQLNSQSKEKRKDAVKKVIAYMTVGKD------VSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGK----- 80 (734)
T ss_pred hhhchHHHHHhhhhhhhhHHHHHHHHHhcCccCcc------hHhhhHHHHhhcccCCchHHHHHHHHHHHhhccC-----
Confidence 456777777776665566666665 5555554433 1245677788888888888776655555555521
Q ss_pred cccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCCh-hhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHH
Q 000133 132 GSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTE-GFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLA 210 (2100)
Q Consensus 132 ~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~-~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~ 210 (2100)
.....+++.. ++.+..+..+.++..| ++.+++-.. ..+. -...++.+.+++.++.+|..++.+.+
T Consensus 81 ---P~~a~~avnt---~~kD~~d~np~iR~lA---lrtm~~l~v~~i~e-----y~~~Pl~~~l~d~~~yvRktaa~~va 146 (734)
T KOG1061|consen 81 ---PDLAILAVNT---FLKDCEDPNPLIRALA---LRTMGCLRVDKITE-----YLCDPLLKCLKDDDPYVRKTAAVCVA 146 (734)
T ss_pred ---chHHHhhhhh---hhccCCCCCHHHHHHH---hhceeeEeehHHHH-----HHHHHHHHhccCCChhHHHHHHHHHH
Confidence 1112233333 3444444556677655 444443322 2222 23668999999999999999998887
Q ss_pred HHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCh
Q 000133 211 CMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCK 260 (2100)
Q Consensus 211 ~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~ 260 (2100)
++-..+. ..+.+.|.++.|-.++.+++ +.+..+|..+|..+...++
T Consensus 147 kl~~~~~---~~~~~~gl~~~L~~ll~D~~-p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 147 KLFDIDP---DLVEDSGLVDALKDLLSDSN-PMVVANALAALSEIHESHP 192 (734)
T ss_pred HhhcCCh---hhccccchhHHHHHHhcCCC-chHHHHHHHHHHHHHHhCC
Confidence 7765443 55667888999999998544 5799999999999886544
No 193
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.34 E-value=0.81 Score=56.77 Aligned_cols=273 Identities=12% Similarity=0.044 Sum_probs=141.6
Q ss_pred HHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHh
Q 000133 361 QTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQG 440 (2100)
Q Consensus 361 ~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~ 440 (2100)
|.|-.+++..- +.|+..++.+++.++..--..+.+. ..+..|-..|+++....|-.|.+.|..|+...+.. +.
T Consensus 267 pfL~~wls~k~-emV~lE~Ar~v~~~~~~nv~~~~~~--~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k---v~- 339 (898)
T COG5240 267 PFLNSWLSDKF-EMVFLEAARAVCALSEENVGSQFVD--QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK---VS- 339 (898)
T ss_pred HHHHHHhcCcc-hhhhHHHHHHHHHHHHhccCHHHHH--HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce---ee-
Confidence 44444444332 3467888888887742211111111 23555666778888889999999999999876552 11
Q ss_pred CCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHH
Q 000133 441 REGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRA 520 (2100)
Q Consensus 441 ~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~ 520 (2100)
-+=+-+-.++.+.+..+--.|...|..- +.++....++. .+..++.+-++.-+--+..++..||..-|.-+.
T Consensus 340 -vcN~evEsLIsd~Nr~IstyAITtLLKT--Gt~e~idrLv~-----~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~ 411 (898)
T COG5240 340 -VCNKEVESLISDENRTISTYAITTLLKT--GTEETIDRLVN-----LIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKL 411 (898)
T ss_pred -ecChhHHHHhhcccccchHHHHHHHHHc--CchhhHHHHHH-----HHHHHHHhhccCceEEeHHHHHHHHhhCcHHHH
Confidence 1112333445555555555444444432 23443333221 222223333344444455555555543333222
Q ss_pred HH--------HhCCcH---HHHHHHhhc---CChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHH
Q 000133 521 CV--------ESADAV---PALLWLLKN---GSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKS 586 (2100)
Q Consensus 521 ~i--------~~~g~i---~~Lv~lL~~---~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~ 586 (2100)
.+ .++|+. ...++.+.+ ..|+.++.|...|+....+.+ .-.-+.+.|+.
T Consensus 412 s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDce-----------------y~~I~vrIL~i 474 (898)
T COG5240 412 SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCE-----------------YHQITVRILGI 474 (898)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcc-----------------hhHHHHHHHHH
Confidence 21 123332 122222221 234455555444444433222 22334555665
Q ss_pred HHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHH
Q 000133 587 MLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVE 666 (2100)
Q Consensus 587 l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~ 666 (2100)
|+...+... ....-+..+..-+--.+.-+|..|..||...+-+..+. +....+.-.|-+.+.+.+.+++..
T Consensus 475 LG~EgP~a~------~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~---~~~~sv~~~lkRclnD~DdeVRdr 545 (898)
T COG5240 475 LGREGPRAK------TPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV---VSPQSVENALKRCLNDQDDEVRDR 545 (898)
T ss_pred hcccCCCCC------CcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc---ccHHHHHHHHHHHhhcccHHHHHH
Confidence 555433211 01112444444333456678999999998877653321 223345566778889999999999
Q ss_pred HHHHHHHH
Q 000133 667 ASRCLAAI 674 (2100)
Q Consensus 667 aa~aL~~L 674 (2100)
|+-.+.++
T Consensus 546 Asf~l~~~ 553 (898)
T COG5240 546 ASFLLRNM 553 (898)
T ss_pred HHHHHHhh
Confidence 99999988
No 194
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.31 E-value=0.00027 Score=57.64 Aligned_cols=41 Identities=46% Similarity=0.687 Sum_probs=38.0
Q ss_pred CcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 000133 473 NDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCN 513 (2100)
Q Consensus 473 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~ 513 (2100)
+++++..+++.|++|+|+++|.++++++++.|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 36788999999999999999999999999999999999973
No 195
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.26 E-value=0.75 Score=57.02 Aligned_cols=294 Identities=15% Similarity=0.134 Sum_probs=170.6
Q ss_pred chhHhHHHHHHHHhhcCCCcccccccccCCChHhhhhccCCCCHHHHHHHHHHHHHhhccccccccccccCchHHHHHHh
Q 000133 1498 PDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVL 1577 (2100)
Q Consensus 1498 ~~~~~~A~~~L~nL~~~~~~~~~~~~~~~~~l~~Lv~~L~~~~~~vq~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~lL 1577 (2100)
..++..+.+.+..+....-... .-...+..|-.+|++.....|-.|.++|.++++....+..... +-+-.+.
T Consensus 278 emV~lE~Ar~v~~~~~~nv~~~----~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN----~evEsLI 349 (898)
T COG5240 278 EMVFLEAARAVCALSEENVGSQ----FVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCN----KEVESLI 349 (898)
T ss_pred hhhhHHHHHHHHHHHHhccCHH----HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecC----hhHHHHh
Confidence 5566666777766543321100 1123456677778888999999999999999986555443333 4455667
Q ss_pred ccCCHHHHHHHHHHHHHhhcCChh-HHHhccChHHHHHHhcccCCCchHHHHHHHHHHHHhhhcccchhhhcccHHHHH-
Q 000133 1578 GSGIHILQQRAVKALVSIALTWPN-EIAKEGGVTELSKIILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLV- 1655 (2100)
Q Consensus 1578 ~s~~~~vr~~Al~AL~~Ls~~~~n-~l~~~G~i~~Ll~lL~~~~~~~~~~l~e~a~~~L~~i~~~~~~~~~~~~v~~Lv- 1655 (2100)
++.|..+-..|+-.|.+-++...- +++.. |+..+..+ .++.+.-..+ |...|++........ -+.-|.
T Consensus 350 sd~Nr~IstyAITtLLKTGt~e~idrLv~~--I~sfvhD~---SD~FKiI~id-a~rsLsl~Fp~k~~s----~l~FL~~ 419 (898)
T COG5240 350 SDENRTISTYAITTLLKTGTEETIDRLVNL--IPSFVHDM---SDGFKIIAID-ALRSLSLLFPSKKLS----YLDFLGS 419 (898)
T ss_pred hcccccchHHHHHHHHHcCchhhHHHHHHH--HHHHHHhh---ccCceEEeHH-HHHHHHhhCcHHHHH----HHHHHHH
Confidence 788888888888888877766422 23222 22222222 3345544444 677777665322211 122222
Q ss_pred HHhhcCCHHHHHHHHHHHHHhccCChhhHHHHHHcccHHHHHHHHhccCcHHHHHHHHHHHhcCchhhhhhhchhhhhhh
Q 000133 1656 RLLRSGSEGTVIGSLNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNGKIRESKATKSAILPL 1735 (2100)
Q Consensus 1656 ~ll~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Li~lL~s~~~~~~a~~lL~~L~~~~~~~~~~~~~~~i~~L 1735 (2100)
.|++.++-+-+..+..++..+.+.++..++ .+++.|..|+++.+..+..++.|.-|..++.-... -...|..+
T Consensus 420 ~L~~eGg~eFK~~~Vdaisd~~~~~p~skE-----raLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~--P~~yvrhI 492 (898)
T COG5240 420 SLLQEGGLEFKKYMVDAISDAMENDPDSKE-----RALEVLCTFIEDCEYHQITVRILGILGREGPRAKT--PGKYVRHI 492 (898)
T ss_pred HHHhcccchHHHHHHHHHHHHHhhCchHHH-----HHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCC--cchHHHHH
Confidence 234555668899999999998888876654 46788999999977889999999999875522111 01222222
Q ss_pred -hhhc-cChhhHHHHHHHHHHHHhcchhhhh--hHHHhhhhhchHHHHHHhhhcCCCHHHHHHHHHHHHHhhcCCcccH-
Q 000133 1736 -SQYL-LDPQTQAQQARLLATLALGDLFQNE--GLARSADAVSACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNK- 1810 (2100)
Q Consensus 1736 -~~~l-~~~~~~~~~~~~~A~~~l~~~~~~~--~l~~~~~~~~a~~~Lv~lL~~~~~~~~~~~A~~aL~~l~~~~~~~~- 1810 (2100)
.+++ .++.+ +. .|+.+++...-+. .+... +-...|..+|++. +.++|..|..+|.++-..+.-..
T Consensus 493 yNR~iLEN~iv--Rs---aAv~aLskf~ln~~d~~~~~----sv~~~lkRclnD~-DdeVRdrAsf~l~~~~~~da~~pl 562 (898)
T COG5240 493 YNRLILENNIV--RS---AAVQALSKFALNISDVVSPQ----SVENALKRCLNDQ-DDEVRDRASFLLRNMRLSDACEPL 562 (898)
T ss_pred HHHHHHhhhHH--HH---HHHHHHHHhccCccccccHH----HHHHHHHHHhhcc-cHHHHHHHHHHHHhhhhhhhhhcc
Confidence 2222 22222 22 3444443222111 01100 1133566688776 99999999999888773333222
Q ss_pred HHHHhhCCHHHHHHHh
Q 000133 1811 RAVAEAGGVQVVLDLI 1826 (2100)
Q Consensus 1811 ~~~~~~g~i~~L~~lL 1826 (2100)
....+.|-+|.|..-|
T Consensus 563 ~~sd~~~dipsle~~l 578 (898)
T COG5240 563 FSSDELGDIPSLELEL 578 (898)
T ss_pred ccccccCCcchhHHhh
Confidence 3444556666665444
No 196
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.0049 Score=76.75 Aligned_cols=246 Identities=13% Similarity=0.102 Sum_probs=164.5
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHHhcCC--CCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccC--chhHHHHhhhc
Q 000133 528 VPALLWLLKNGSANGKEIAAKTLNHLIHKS--DTATISQLTALLTSDLPESKVYVLDALKSMLSVVS--FSDILREGSAA 603 (2100)
Q Consensus 528 i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~--~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~--~~~~~~~~i~~ 603 (2100)
...|..+..+++.+++..|..+|..|.... ........+..+.|+...+|..|...+.-++..-+ .+..-.+.-..
T Consensus 200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~ 279 (823)
T KOG2259|consen 200 ARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLK 279 (823)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhcccccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhH
Confidence 333666666777777777777777665422 11345566777778888888887777766666442 11100111112
Q ss_pred cchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHh--------
Q 000133 604 NDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIF-------- 675 (2100)
Q Consensus 604 ~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~-------- 675 (2100)
..+...+...+.+.+-.+|-.|+.+|+.+-..+++...+......+..|- -..+..+....+.+=.
T Consensus 280 D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lR------Rkr~ahkrpk~l~s~GewSsGk~~ 353 (823)
T KOG2259|consen 280 DAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLR------RKRTAHKRPKALYSSGEWSSGKEW 353 (823)
T ss_pred HHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhh------hhhhcccchHHHHhcCCcccCccc
Confidence 34577888889999999999999999999887777666655544443221 1122233333332211
Q ss_pred -cCCc----hhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcC-cHHHHHHHHcCcHHHHHHHHccCChhHHH
Q 000133 676 -LSVR----ENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD-SEVSEKAIAEEIILPATRVLCEGTISGKT 749 (2100)
Q Consensus 676 -~~~~----~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~-~~~~~~~v~~~~v~~L~~ll~~~~~~~~~ 749 (2100)
.+.+ +.....++..|+--.++.-+.+.--|||..|+..++.|+.+ +..+ ...+..|+..+.++-..+|.
T Consensus 354 ~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA-----~~aldfLvDMfNDE~~~VRL 428 (823)
T KOG2259|consen 354 NADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA-----VRALDFLVDMFNDEIEVVRL 428 (823)
T ss_pred cccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH-----HHHHHHHHHHhccHHHHHHH
Confidence 0000 12344578889999999999999999999999999999965 4444 46788999999999999999
Q ss_pred HHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcccccc
Q 000133 750 LAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVA 793 (2100)
Q Consensus 750 ~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~ 793 (2100)
.|..+|..+..+.... +.-+..+...|...+.++.
T Consensus 429 ~ai~aL~~Is~~l~i~---------eeql~~il~~L~D~s~dvR 463 (823)
T KOG2259|consen 429 KAIFALTMISVHLAIR---------EEQLRQILESLEDRSVDVR 463 (823)
T ss_pred HHHHHHHHHHHHheec---------HHHHHHHHHHHHhcCHHHH
Confidence 9999999999886654 4456667777777666655
No 197
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.14 Score=70.24 Aligned_cols=452 Identities=16% Similarity=0.141 Sum_probs=234.9
Q ss_pred HHHHHHHHHHhhcCchhhh-HHHhcCcHHHHHHHHhcCCcchHHHHHHHHHHHhh--cCHHHHhhhcccCcHHHHHHHHh
Q 000133 1165 FLALGFLIQLAKDCPSNKI-VMVEAGALEALTKYLSLGPQDATEEAATDLLGILF--SSAEIRRHESAFAAVSQLVAVLR 1241 (2100)
Q Consensus 1165 ~~Al~~L~~la~~~~~~r~-~i~e~G~i~~L~~~L~s~~~~~~~~~~~~ll~~l~--~~~~~~~~~~~~~al~~Li~~L~ 1241 (2100)
...+|+|..+-.-.. .+. ...-.....+...+|+..+.-.|..+... +++.+ .|... ..+.+..|+.-|-
T Consensus 837 A~~VWLLs~vq~l~~-~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrG-lglVYelgd~~~-----k~~LV~sL~~tl~ 909 (1702)
T KOG0915|consen 837 AGCVWLLSLVQYLGQ-QPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRG-LGLVYELGDSSL-----KKSLVDSLVNTLT 909 (1702)
T ss_pred HHHHHHHHHHHHhcc-CchhhhccHHHHHHHHHHhcccHHHHHHHHhcC-ceEEEecCCchh-----HHHHHHHHHHHHh
Confidence 678888887754332 111 11112344677777776544455554433 22221 11111 2234556665554
Q ss_pred cCCHH-------HHHHH---------------HHHHHHhhcchhhhhhhhhcCChHHHHHhhccCChhh-HHHHHHHHHH
Q 000133 1242 LGGRG-------ARYSA---------------AKALESLFSADHIRNAESARQAVQPLVEILNTGLERE-QHAAIAALVR 1298 (2100)
Q Consensus 1242 ~~~~~-------~r~~A---------------a~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~-~~~A~~aL~~ 1298 (2100)
.|... ...+. =+-|.+|++ .++++..|--.+++-++.-... ++-|++.++.
T Consensus 910 ~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LAS------dl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~ 983 (1702)
T KOG0915|consen 910 GGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLAS------DLGQPDLVYKFMQLANHNATWNSKKGAAFGFGA 983 (1702)
T ss_pred ccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHh------hcCChHHHHHHHHHhhhhchhhcccchhhchHH
Confidence 44321 11111 111334432 2455666666666666554333 3348888888
Q ss_pred hhcCCchh--hHHHHhhhcchhHHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHhhcChHHHHHHHhcCCchHHH
Q 000133 1299 LLSENPSR--ALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQH 1376 (2100)
Q Consensus 1299 La~~~~~~--~~~~~~v~~gal~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~~~~~~~i~~Lv~lL~~~~~~~~~ 1376 (2100)
++.....+ +++ ...+|.|+++=-+ |+..+......+|..|..++..-....-......|+.-|.+....+|+
T Consensus 984 i~~~a~~kl~p~l-----~kLIPrLyRY~yD-P~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVRe 1057 (1702)
T KOG0915|consen 984 IAKQAGEKLEPYL-----KKLIPRLYRYQYD-PDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVRE 1057 (1702)
T ss_pred HHHHHHHhhhhHH-----HHhhHHHhhhccC-CcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 87533222 222 2367888887555 688999999999999998876555555566777888888889999999
Q ss_pred HHHHHHHHhcc---cHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcC---CchhhHHHHhcCcHHHHHHHh
Q 000133 1377 SVVRALDKLVD---DEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKD---RPSCKLEMVKAGVIESVLDIL 1450 (2100)
Q Consensus 1377 ~A~~aL~~L~~---~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~---~~~~k~~i~~~~~i~~lv~~L 1450 (2100)
.++-||..|.. .+...+.+ ..+-..+...++|=...||++|-.+...+++- --+...-.....++..++.+|
T Consensus 1058 asclAL~dLl~g~~~~~~~e~l--pelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfL 1135 (1702)
T KOG0915|consen 1058 ASCLALADLLQGRPFDQVKEKL--PELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFL 1135 (1702)
T ss_pred HHHHHHHHHHcCCChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHH
Confidence 99999999984 22222221 12233444445565667777655544433321 101100001122455555555
Q ss_pred c-----cCChhHHHHHHHHHHHHHhccCCcccccccCchHHHHHHhccCCCCchhHhH-HHHHHHHhhcC--CCcccccc
Q 000133 1451 H-----EAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHS-ALQVLVNILEH--PQCRADYS 1522 (2100)
Q Consensus 1451 ~-----~~~~~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~~~~~~~~~-A~~~L~nL~~~--~~~~~~~~ 1522 (2100)
- +.-.++|......+..|++...-.-.+..++.++.|+..+.... +.+.-. ++.+ .|+... +.-+....
T Consensus 1136 l~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE--~~vLnYls~r~-~~~e~ealDt~R~s~a 1212 (1702)
T KOG0915|consen 1136 LDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELE--PQVLNYLSLRL-INIETEALDTLRASAA 1212 (1702)
T ss_pred hccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccc--hHHHHHHHHhh-hhhHHHHHHHHHHhhh
Confidence 3 34556777788888888887765544557777888777776543 333221 2211 111000 00000000
Q ss_pred --cccCCC----------------hHhhhhccCCC-CHHHHHHHHHHHHHhhccccccccccccCchHHHHHHhccCCHH
Q 000133 1523 --LTSHQA----------------IEPLIPLLDSP-APAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHI 1583 (2100)
Q Consensus 1523 --~~~~~~----------------l~~Lv~~L~~~-~~~vq~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~lL~s~~~~ 1583 (2100)
..-... ++.+.++++++ .-..|..++..+.-+...-..--.......+..+.-.+++.|+.
T Consensus 1213 ksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNes 1292 (1702)
T KOG0915|consen 1213 KSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNES 1292 (1702)
T ss_pred cCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHH
Confidence 000111 23333333211 22234444444444433100000011112234455555789999
Q ss_pred HHHHHHHHHHHhhcCC-hhHHHhccChHHHHHHhcccCCCchHHHHHHHHHHHHhhhcccchhh
Q 000133 1584 LQQRAVKALVSIALTW-PNEIAKEGGVTELSKIILQADPSLPHALWESAASVLSSILQFSSEFY 1646 (2100)
Q Consensus 1584 vr~~Al~AL~~Ls~~~-~n~l~~~G~i~~Ll~lL~~~~~~~~~~l~e~a~~~L~~i~~~~~~~~ 1646 (2100)
+|++-..|.+.|.... ++.+.+- +..++..+.-.+++.. ..+++++++|++...+.+
T Consensus 1293 v~kafAsAmG~L~k~Ss~dq~qKL--ie~~l~~~l~k~es~~----siscatis~Ian~s~e~L 1350 (1702)
T KOG0915|consen 1293 VRKAFASAMGYLAKFSSPDQMQKL--IETLLADLLGKDESLK----SISCATISNIANYSQEML 1350 (1702)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHH--HHHHHHHHhccCCCcc----chhHHHHHHHHHhhHHHH
Confidence 9999999999999653 4443322 3444544443333333 236777777776665544
No 198
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.22 E-value=0.0041 Score=74.29 Aligned_cols=181 Identities=14% Similarity=0.136 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhh
Q 000133 457 QQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLK 536 (2100)
Q Consensus 457 ~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~ 536 (2100)
-++.+|..++.-+.-+.......+.-.++...+...+.++.-..|+.++|+++|++.. |.
T Consensus 406 lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdA--------------------L~ 465 (728)
T KOG4535|consen 406 LVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDA--------------------LI 465 (728)
T ss_pred HHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHH--------------------HH
Confidence 3455566666666654334444455556667777778888889999999999999751 11
Q ss_pred cCChhHHHHHH----------HHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccC-chhH-HHHhhhcc
Q 000133 537 NGSANGKEIAA----------KTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVS-FSDI-LREGSAAN 604 (2100)
Q Consensus 537 ~~~~~~~~~Aa----------~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~-~~~~-~~~~i~~~ 604 (2100)
.+.|..+..++ +.+.+.|. .+...++.++.++||++..+.. ..+. .++.+ .
T Consensus 466 ~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~---------------Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~--~ 528 (728)
T KOG4535|consen 466 VNMPTPDSFQERFSGLLLLKMLRSAIEAS---------------ADKDKVKSNAVRALGNLLQFLQPIEKPTFAEII--E 528 (728)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHHHHHhh---------------hhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHH--H
Confidence 11111111111 11112211 1334577777777777765432 1111 11111 1
Q ss_pred chHHHHHH-HhcCCCHHHHHHHHHHHHHHhcCChh-hHHHHHhcCchHHHHHhhcC-CCHHHHHHHHHHHHHH
Q 000133 605 DAVETMIK-ILSSTKEETQAKSASALAGIFETRKD-LRESSIAVKTLWSVMKLLDV-GSECILVEASRCLAAI 674 (2100)
Q Consensus 605 ~~i~~Lv~-lL~s~~~~~~~~Aa~aL~~L~~~~~~-~~~~~~~~g~v~~Lv~lL~~-~~~~v~~~aa~aL~~L 674 (2100)
+.+..+++ ..-...-.+|.+||.+++||+++..- .++.-....+.+.|..++.+ .+.+++..|+.+|..-
T Consensus 529 ~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp 601 (728)
T KOG4535|consen 529 ESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVP 601 (728)
T ss_pred HHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCC
Confidence 22333333 23345678999999999999987432 33333444578888888854 5668999999988654
No 199
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.54 Score=59.81 Aligned_cols=309 Identities=11% Similarity=0.105 Sum_probs=168.8
Q ss_pred HhhcCCCC-ChHHHHHHHHHHHHHhC-CCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCcc-chHHHHh
Q 000133 364 VNQFKPRL-PFLVQERTIEALASLYG-NPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGS-LWRALQG 440 (2100)
Q Consensus 364 v~lL~~~~-~~~vq~~aa~aL~~L~~-~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~-~~~~i~~ 440 (2100)
-++|.+++ ...++..++-|+-.|+. +|+... ..+....++.+|++.+..+...+...+.-|+..+++ ++.++.
T Consensus 152 ~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~---~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~- 227 (938)
T KOG1077|consen 152 PKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVN---PGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP- 227 (938)
T ss_pred HHHHhCCcchHHHHHHHHHHHHHHHhcCccccC---hhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH-
Confidence 35555554 56789999999999954 454322 234567889999988888888888888888877665 333332
Q ss_pred CCcHHHHHHhhCCC-------------CHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHH
Q 000133 441 REGIQLLISLLGLS-------------SEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASI 507 (2100)
Q Consensus 441 ~g~i~~Lv~lL~s~-------------~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~a 507 (2100)
.++..|..+.... .|-++...+.+|.++-. . .++..|..-..+
T Consensus 228 -~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~-~----------------------~D~~~r~~l~ev 283 (938)
T KOG1077|consen 228 -LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPT-P----------------------EDPSTRARLNEV 283 (938)
T ss_pred -HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCC-C----------------------CCchHHHHHHHH
Confidence 2233333333222 23344444444444421 1 122222222222
Q ss_pred HHHH---hcCChhh---HHHHHhCCcHHHHHHHh--hcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHH
Q 000133 508 LRNL---CNHSEDI---RACVESADAVPALLWLL--KNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVY 579 (2100)
Q Consensus 508 L~~L---~~~~~~~---~~~i~~~g~i~~Lv~lL--~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~ 579 (2100)
|..+ +...+.. +.......++=-.+.+. -+.+++....|+..|+.+..+.+ ..+|--
T Consensus 284 l~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE---------------~NiRYL 348 (938)
T KOG1077|consen 284 LERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRE---------------TNIRYL 348 (938)
T ss_pred HHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhccc---------------ccchhh
Confidence 2222 2211111 11111111111112221 13456677777777777755443 466777
Q ss_pred HHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcC
Q 000133 580 VLDALKSMLSVVSFSDILREGSAANDAVETMIKILS-STKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDV 658 (2100)
Q Consensus 580 a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~-s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~ 658 (2100)
+.+.++.|+......+.++. . ...++..|+ ..+..+|+.|...|..+|.. ++... +|.-|++.|.+
T Consensus 349 aLEsm~~L~ss~~s~davK~----h--~d~Ii~sLkterDvSirrravDLLY~mcD~--~Nak~-----IV~elLqYL~t 415 (938)
T KOG1077|consen 349 ALESMCKLASSEFSIDAVKK----H--QDTIINSLKTERDVSIRRRAVDLLYAMCDV--SNAKQ-----IVAELLQYLET 415 (938)
T ss_pred hHHHHHHHHhccchHHHHHH----H--HHHHHHHhccccchHHHHHHHHHHHHHhch--hhHHH-----HHHHHHHHHhh
Confidence 88888877766433332222 1 667788887 77899999999999999965 23222 45567777777
Q ss_pred CCHHHHHHHHHHHHHHhcCC-chh-H---------HH--HHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHH
Q 000133 659 GSECILVEASRCLAAIFLSV-REN-R---------EV--AAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSE 725 (2100)
Q Consensus 659 ~~~~v~~~aa~aL~~L~~~~-~~~-~---------~~--~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~ 725 (2100)
-+..++..-+.-++-|+..- ++- - +. .++..+.+-.++++.- .+++++..|+..+...++.+..++
T Consensus 416 Ad~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiVv-Nnedlq~yaak~~fe~Lq~~a~hE 494 (938)
T KOG1077|consen 416 ADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVV-NNEDLQGYAAKRLFEYLQKPACHE 494 (938)
T ss_pred cchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeEe-cchhhhHHHHHHHHHHHhhhHHHH
Confidence 77666666555444443211 010 0 00 0222333333333332 467788888888887777766666
Q ss_pred HHHH
Q 000133 726 KAIA 729 (2100)
Q Consensus 726 ~~v~ 729 (2100)
.++.
T Consensus 495 ~mVK 498 (938)
T KOG1077|consen 495 NMVK 498 (938)
T ss_pred HHHH
Confidence 6654
No 200
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.15 E-value=0.068 Score=66.55 Aligned_cols=230 Identities=13% Similarity=0.083 Sum_probs=153.4
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCC--CHHHHHHHHHHHHHHhcCChhhHHH
Q 000133 444 IQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG--SAKAKEDSASILRNLCNHSEDIRAC 521 (2100)
Q Consensus 444 i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~vre~A~~aL~~L~~~~~~~~~~ 521 (2100)
.+.+..++-+++.+++..+..+++.+.. +.+....+.+.+.---++.-|... +..-|++|...+..+.......+.
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~- 104 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE- 104 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc-
Confidence 3444444444559999999999999985 667777777776555555656543 566788999998888765222111
Q ss_pred HHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhh
Q 000133 522 VESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGS 601 (2100)
Q Consensus 522 i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i 601 (2100)
...|++..++.+.++.+++.+..|..+|+.++... |+ .+
T Consensus 105 -~~~~vvralvaiae~~~D~lr~~cletL~El~l~~------------------------------------P~----lv 143 (371)
T PF14664_consen 105 -IPRGVVRALVAIAEHEDDRLRRICLETLCELALLN------------------------------------PE----LV 143 (371)
T ss_pred -CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC------------------------------------HH----HH
Confidence 24567788888888877777777777777775522 11 45
Q ss_pred hccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCC-------CH--HHHHHHHHHHH
Q 000133 602 AANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVG-------SE--CILVEASRCLA 672 (2100)
Q Consensus 602 ~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~-------~~--~v~~~aa~aL~ 672 (2100)
...||++.|++.+-++..++.+..+.++..+... +..|..+...--+..+..-+.+. +. +....+..++.
T Consensus 144 ~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~-p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~ 222 (371)
T PF14664_consen 144 AECGGIRVLLRALIDGSFSISESLLDTLLYLLDS-PRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAIS 222 (371)
T ss_pred HHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCC-cchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHH
Confidence 5678999999988777767888889999998876 44444333322344444333222 22 34566677777
Q ss_pred HHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHH
Q 000133 673 AIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANL 717 (2100)
Q Consensus 673 ~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L 717 (2100)
.+..+=+..-....-+..+++.|+..+..|++++|......+..+
T Consensus 223 ~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dl 267 (371)
T PF14664_consen 223 TLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDL 267 (371)
T ss_pred HHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 765543332212122236899999999999999999999999888
No 201
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.029 Score=64.53 Aligned_cols=275 Identities=15% Similarity=0.098 Sum_probs=179.2
Q ss_pred hHHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHH-hhcChHHHHHHHhcCCchHHHHHHHHHHHhcccHHHHHHHH
Q 000133 1318 VDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVA-AARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVA 1396 (2100)
Q Consensus 1318 l~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~~~-~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~ 1396 (2100)
+..+++++.+. +..++..|...+-.+... .++.-.. ....++.+.+++....+ ...|+.+|.|++.++..+..+.
T Consensus 5 l~elv~ll~~~-sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll 80 (353)
T KOG2973|consen 5 LVELVELLHSL-SPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLL 80 (353)
T ss_pred HHHHHHHhccC-ChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHH
Confidence 45677778774 668888888766666555 3333222 23467778888888777 6789999999999888888877
Q ss_pred hcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCchhhHHHHh-c----CcHHHHHHHhc-cCC--hhHHHHHHHHHHHH
Q 000133 1397 AHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVK-A----GVIESVLDILH-EAP--DFLCSAFAELLRIL 1468 (2100)
Q Consensus 1397 ~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k~~i~~-~----~~i~~lv~~L~-~~~--~~~~~~aa~lL~~L 1468 (2100)
.. ++..++.++.+.....-+..++.|.+++++++.....+.. . ..+..+++.+. .+- ...-+..+.++.+|
T Consensus 81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nl 159 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANL 159 (353)
T ss_pred HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHH
Confidence 77 8888888888887888889999999999997666666543 2 34444444443 321 13345566677778
Q ss_pred HhccCCccccccc-CchHHHHHHhccCCCCchhHhH-HHHHHHHhhcCCCcccccccccCC-------------------
Q 000133 1469 TNNAGIAKGPSAA-KVVEPLFLLLTRSEFGPDGQHS-ALQVLVNILEHPQCRADYSLTSHQ------------------- 1527 (2100)
Q Consensus 1469 s~~~~~~~~~~~~-~~v~~Ll~ll~~~~~~~~~~~~-A~~~L~nL~~~~~~~~~~~~~~~~------------------- 1527 (2100)
+.....+...... .+....+.-++.++ ..+++. ...+|.|.+.+......+--...+
T Consensus 160 s~~~~gR~l~~~~k~~p~~kll~ft~~~--s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEd 237 (353)
T KOG2973|consen 160 SQFEAGRKLLLEPKRFPDQKLLPFTSED--SQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEED 237 (353)
T ss_pred hhhhhhhhHhcchhhhhHhhhhcccccc--hhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHH
Confidence 7766555333222 22333333334322 555543 566777755443322221001111
Q ss_pred --ChHhhhhccC-----CCCHHHHHHHHHHHHHhhccccccccccccCchHHHHHHh--ccCCHHHHHHHHHHHHHhhcC
Q 000133 1528 --AIEPLIPLLD-----SPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVL--GSGIHILQQRAVKALVSIALT 1598 (2100)
Q Consensus 1528 --~l~~Lv~~L~-----~~~~~vq~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~lL--~s~~~~vr~~Al~AL~~Ls~~ 1598 (2100)
.+++=+++|. +++++++..-+++|-.+..+...|+.+.+.|+.+ +++-+ ...+++++++.-+....+-..
T Consensus 238 m~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYp-ilRElhk~e~ded~~~ace~vvq~Lv~~ 316 (353)
T KOG2973|consen 238 MAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYP-ILRELHKWEEDEDIREACEQVVQMLVRL 316 (353)
T ss_pred HhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchH-HHHHHhcCCCcHHHHHHHHHHHHHHHhc
Confidence 1333235554 5789999999999999999999999999987754 45555 347888888888777777665
Q ss_pred Ch
Q 000133 1599 WP 1600 (2100)
Q Consensus 1599 ~~ 1600 (2100)
.+
T Consensus 317 e~ 318 (353)
T KOG2973|consen 317 EP 318 (353)
T ss_pred cc
Confidence 43
No 202
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.11 E-value=0.0015 Score=63.65 Aligned_cols=87 Identities=28% Similarity=0.330 Sum_probs=72.3
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHhhcchhhhhhhhhcCChHHHHHhhccCChhhHHHHHHHHHHhhcCCchhhHHHH
Q 000133 1233 VSQLVAVL-RLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVA 1311 (2100)
Q Consensus 1233 l~~Li~~L-~~~~~~~r~~Aa~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~La~~~~~~~~~~~ 1311 (2100)
|+.|+..| ++++...|..|+++|+.+ +.+.+++.|+.++++++..++..|+.+|++++
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL----------GDPEAIPALIELLKDEDPMVRRAAARALGRIG----------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC----------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------
Confidence 57899988 788899999999998854 44567999999999999999999999999986
Q ss_pred hhhcchhHHHHHHHhhcCChhhHHHHHHHHH
Q 000133 1312 DVEMNAVDVLCRILSSNCSMELKGDAAELCG 1342 (2100)
Q Consensus 1312 ~v~~gal~~L~~lL~~~~~~~~~~~a~~~L~ 1342 (2100)
...+++.|.+.+.+.++..++..+...|+
T Consensus 60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 23578999999988766677888887764
No 203
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.09 E-value=0.0009 Score=54.61 Aligned_cols=41 Identities=29% Similarity=0.362 Sum_probs=38.1
Q ss_pred ChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhc
Q 000133 515 SEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIH 555 (2100)
Q Consensus 515 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~ 555 (2100)
+++++..+.+.|++|+|+++|+++++.+++.|+++|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46788999999999999999999999999999999999973
No 204
>PLN02270 phospholipase D alpha
Probab=97.03 E-value=0.0011 Score=86.80 Aligned_cols=105 Identities=21% Similarity=0.367 Sum_probs=83.2
Q ss_pred CCCceeeeeccchhhhh----------------h----CCCcceEEEecCCCCCccccccccC-CCccccccceeccccC
Q 000133 1978 PGTLVVIIKRGNNMKQS----------------V----GNPSVYCKLTLGNTPPRQTKIVSTG-PNPEWEESFAWSFEIP 2036 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~----------------~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 2036 (2100)
=|+|-||||..+++... + |.+..+.-+.+++.+-=+|+|+++. .||+|+|.|---..-+
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 48889999988876531 1 1134555777777777789999886 4999999987554422
Q ss_pred CCCCeEEEEeecCCccCCcccceEEEEEeeEEeecccccceeecCCCC
Q 000133 2037 PKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVAGEYTLLPESK 2084 (2100)
Q Consensus 2037 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2084 (2100)
- ..+++.||+.+.||-.-+|++.|+.++++.-..+.|-|.+..+++
T Consensus 87 ~--~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~ 132 (808)
T PLN02270 87 A--SNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDK 132 (808)
T ss_pred c--ceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCC
Confidence 2 589999999999999999999999999999889999999977754
No 205
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.14 Score=61.76 Aligned_cols=258 Identities=16% Similarity=0.150 Sum_probs=173.7
Q ss_pred HHHHHHhhhccchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccC
Q 000133 74 AATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGL 153 (2100)
Q Consensus 74 aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~ 153 (2100)
...-+..++.-|+...-++...+++.|+.+|.++|.++-.+.+..|..++..+.-.+ ..+| ...|++
T Consensus 104 ~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~e------s~eg-AevLid------ 170 (536)
T KOG2734|consen 104 IIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYE------SEEG-AEVLID------ 170 (536)
T ss_pred HHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhccccc------cccc-HHHHHH------
Confidence 444555667778888888899999999999999999998888888999987322111 0111 112222
Q ss_pred CCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHH------HHHHHHHHHHHHhhcCcchhhHHhhhc
Q 000133 154 KSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSS------TQAHVCFLLACMMEEDVSVCSRVLAAD 227 (2100)
Q Consensus 154 ~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~------v~~~a~~~L~~L~~~~~~~~~~i~~~g 227 (2100)
++++.+.++.|++-+..=|.. -..++..++-|+..-.+..+..+++.|
T Consensus 171 --------------------------aLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ 224 (536)
T KOG2734|consen 171 --------------------------ALVDGQVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQG 224 (536)
T ss_pred --------------------------HHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhh
Confidence 244445555555554432222 234566677777777777888888999
Q ss_pred hHHHHHHHhcCC-CCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHh
Q 000133 228 ATKQLLKLLGSG-NEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANI 306 (2100)
Q Consensus 228 ~i~~Lv~lL~~~-~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl 306 (2100)
.+.+|++-+... .-..-+..|..+|.-+-..+.+++.....-.|+..+++-+.--.
T Consensus 225 ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk----------------------- 281 (536)
T KOG2734|consen 225 LLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYK----------------------- 281 (536)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhh-----------------------
Confidence 999999855432 22346778888888888877788888888899998887662110
Q ss_pred hCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 000133 307 SGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASL 386 (2100)
Q Consensus 307 ~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L 386 (2100)
.++|. ....+.+-+....+|+.+
T Consensus 282 --------------~~dP~-------------------------------------------~~~E~EmmeNLFdcLCs~ 304 (536)
T KOG2734|consen 282 --------------RHDPA-------------------------------------------TVDEEEMMENLFDCLCSL 304 (536)
T ss_pred --------------ccCCC-------------------------------------------CcCHHHHHHHHHHHHHHH
Confidence 00110 011122345566788888
Q ss_pred hCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCc--cchHHHHhCCcHHHHHHhh
Q 000133 387 YGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEG--SLWRALQGREGIQLLISLL 451 (2100)
Q Consensus 387 ~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~--~~~~~i~~~g~i~~Lv~lL 451 (2100)
...|.++.++...+++....-+++. ....+..+.++|-....+.+ .++..+++..|+..+..+.
T Consensus 305 lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~F 370 (536)
T KOG2734|consen 305 LMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLF 370 (536)
T ss_pred hcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHH
Confidence 8888999999998998887777765 33456677888888777655 5677788888887666643
No 206
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.01 E-value=0.0018 Score=63.11 Aligned_cols=86 Identities=30% Similarity=0.416 Sum_probs=71.0
Q ss_pred HHHHHHHh-hcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccch
Q 000133 528 VPALLWLL-KNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDA 606 (2100)
Q Consensus 528 i~~Lv~lL-~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~ 606 (2100)
+|.|++.+ +++++.++..++.+|+++ .++..++.|..++.++++.+|..+..+|+.+. +..+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~---~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------------~~~~ 63 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL---GDPEAIPALIELLKDEDPMVRRAAARALGRIG--------------DPEA 63 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC---THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH--------------HHHT
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc---CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------------CHHH
Confidence 57899999 788999999999999855 44678999999999999999999999999542 3446
Q ss_pred HHHHHHHhcCC-CHHHHHHHHHHHH
Q 000133 607 VETMIKILSST-KEETQAKSASALA 630 (2100)
Q Consensus 607 i~~Lv~lL~s~-~~~~~~~Aa~aL~ 630 (2100)
++.|.+++.++ +..+|..|+.+|+
T Consensus 64 ~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 64 IPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 99999988765 5667999998875
No 207
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.00 E-value=0.063 Score=66.82 Aligned_cols=223 Identities=14% Similarity=0.150 Sum_probs=166.6
Q ss_pred ChhhHHHHHHHHHHHhcCcchHHHHHhhcChHHHHHHHhc--CCchHHHHHHHHHHHhcccHHHHHHHHhcCCHHHHHHh
Q 000133 1330 SMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVT--EFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGL 1407 (2100)
Q Consensus 1330 ~~~~~~~a~~~L~~L~~~~~~r~~~~~~~~i~~Lv~lL~~--~~~~~~~~A~~aL~~L~~~~~~~~~~~~~g~i~~L~~l 1407 (2100)
+.+++..+..+++.+..+++....+.....---++.-|.. .++..|++|++-+..+.+-..... ..-.|++..++..
T Consensus 38 ~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~-~~~~~vvralvai 116 (371)
T PF14664_consen 38 SKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK-EIPRGVVRALVAI 116 (371)
T ss_pred cHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc-cCCHHHHHHHHHH
Confidence 3789999999999999998877777766633344444543 346689999999988874211111 1256788999999
Q ss_pred hcCCChhHHHHHHHHHHHhhcCCchhhHHHHhcCcHHHHHHHhccCChhHHHHHHHHHHHHHhccCCcccccccCchHHH
Q 000133 1408 LYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPL 1487 (2100)
Q Consensus 1408 L~~~~~~vr~~A~~aL~~La~~~~~~k~~i~~~~~i~~lv~~L~~~~~~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~L 1487 (2100)
.++.+...|..|++.|+.++-.+| +.+.+.|+++.+++.+.++..+..+.....+..+-+.+..+.....+--++.+
T Consensus 117 ae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l 193 (371)
T PF14664_consen 117 AEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESL 193 (371)
T ss_pred HhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHH
Confidence 999999999999999999997764 45678999999999998865556666666777777888777655566667777
Q ss_pred HHHhccCC-----CCc--hhHhHHHHHHHHhhcCCCcccccccccCCChHhhhhccCCCCHHHHHHHHHHHHHhhc
Q 000133 1488 FLLLTRSE-----FGP--DGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLL 1556 (2100)
Q Consensus 1488 l~ll~~~~-----~~~--~~~~~A~~~L~nL~~~~~~~~~~~~~~~~~l~~Lv~~L~~~~~~vq~~a~~aL~~l~~ 1556 (2100)
+.-+++.+ +.. +-.+.+..++..+...=...-.+.+.+..+++.|+..|.-+.+++|......|-.+..
T Consensus 194 ~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 194 LAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLR 269 (371)
T ss_pred HHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHC
Confidence 77777652 112 2334577788887766555555544445789999999999999999999999999866
No 208
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=2.9 Score=56.46 Aligned_cols=460 Identities=14% Similarity=0.068 Sum_probs=216.5
Q ss_pred HhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhc--------CCCHHHHHHHHHHHHHhhccCccc-
Q 000133 364 VNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLIT--------MATNEVQEELVRALLKLCNNEGSL- 434 (2100)
Q Consensus 364 v~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~--------~~~~~v~~~A~~aL~~L~~~~~~~- 434 (2100)
+.++.+..+...=..++-+|+.|+...-......+ ..+|.++..+. +....+|..||+.++.+++.....
T Consensus 385 id~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~-dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~ 463 (1133)
T KOG1943|consen 385 IDLFNPAEDDSAWHGACLALAELALRGLLLPSLLE-DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSD 463 (1133)
T ss_pred HHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhh
Confidence 34444444444455788888888654332221111 23555554443 223568999999999998875432
Q ss_pred hHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcC
Q 000133 435 WRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNH 514 (2100)
Q Consensus 435 ~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~ 514 (2100)
-+-+.+.=.--.|+..+=++.-.+|+.|..|+.......... -.|++ |+...+.-+...|.++-..++.--..
T Consensus 464 l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~------p~Gi~-Lis~~dy~sV~~rsNcy~~l~~~ia~ 536 (1133)
T KOG1943|consen 464 LKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNF------PHGIS-LISTIDYFSVTNRSNCYLDLCVSIAE 536 (1133)
T ss_pred hhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCC------CCchh-hhhhcchhhhhhhhhHHHHHhHHHHh
Confidence 011111011122333445677788999988888765321110 01333 33333333444444444444333322
Q ss_pred ChhhHHHHHhCCcHHHHHHH-hhcCChhHHHHHHHHHHHHhcCC----CCCcHHHHHHHhhcCCcchHHHHHHHHHHHHh
Q 000133 515 SEDIRACVESADAVPALLWL-LKNGSANGKEIAAKTLNHLIHKS----DTATISQLTALLTSDLPESKVYVLDALKSMLS 589 (2100)
Q Consensus 515 ~~~~~~~i~~~g~i~~Lv~l-L~~~~~~~~~~Aa~aL~~L~~~~----~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~ 589 (2100)
.+..+..+ +..|+.- +...+..+++.++++|.+|+... .....|+++.-..+.+...+.....+.+.+..
T Consensus 537 ~~~y~~~~-----f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 537 FSGYREPV-----FNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred hhhHHHHH-----HHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence 33333332 2222221 33456778888888888876533 12566777777666777666665555554432
Q ss_pred ----ccCc-hhHHHHhhhc-cchHHHHHH-HhcCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCH
Q 000133 590 ----VVSF-SDILREGSAA-NDAVETMIK-ILSST-KEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSE 661 (2100)
Q Consensus 590 ----~~~~-~~~~~~~i~~-~~~i~~Lv~-lL~s~-~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~ 661 (2100)
+.+. ....+..+.. ...++.+.. .+.-+ ..-.+..-+..+.+++.............+.-..+.+.+.+.+
T Consensus 612 ~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n- 690 (1133)
T KOG1943|consen 612 ALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN- 690 (1133)
T ss_pred HhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-
Confidence 1100 0011111110 001222222 12112 2345555666666776654444444444444444455554444
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCC-CHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHH
Q 000133 662 CILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSP-VLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVL 740 (2100)
Q Consensus 662 ~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~-~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll 740 (2100)
.++..+-.+++.++...-..+.. .+...+...+..+..+ ++.+|.--..+++++-. +.......+.+........
T Consensus 691 ~i~~~av~av~~l~s~y~~~d~~--~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~--~~i~~~~q~~lc~~~l~~~ 766 (1133)
T KOG1943|consen 691 QIRDAAVSAVSDLVSTYVKADEG--EEAPLITRYLSRLTKCSEERIRRGLILALGVLPS--ELIHRHLQEKLCKLVLELL 766 (1133)
T ss_pred HHHHHHHHHHHHHHHHHHhcCch--hhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcH--HhhchHHHHHHHHHHhccC
Confidence 67777888888886432111100 0011223344444444 44455555555554420 1111111112233333333
Q ss_pred ccC-ChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhc----ccc---cchHhHHHHHHHHHHcCCCCC
Q 000133 741 CEG-TISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESA----SGS---VATSEALDALAILSRSGGASG 812 (2100)
Q Consensus 741 ~~~-~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~----~~~---v~~~~al~~L~~L~~~~~~~~ 812 (2100)
-++ ....|.+...+|.++...... ....+ .-+..+..|++.+.+- ..+ -+++.||.++..+...-.+
T Consensus 767 p~d~~a~aR~~~V~al~~v~~~~~~-~~~~~--~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~~-- 841 (1133)
T KOG1943|consen 767 PSDAWAEARQQNVKALAHVCKTVTS-LLFSE--SIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSS-- 841 (1133)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHH-hhccc--cHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhcC--
Confidence 333 344677888888887764441 00111 1122333444444332 123 3458888888876422221
Q ss_pred CCCcccceeeccCCCchhhhhhhc----cCChhHHHHHHHHHHHH
Q 000133 813 HVKPAWQVLAEFPKSITPIVSSIA----DATPLLQDKAIEILSRL 853 (2100)
Q Consensus 813 ~~~~~~~~~~~~~~~l~~L~~~l~----~~~~~~~~~a~~~L~~L 853 (2100)
| ....+.++.+++.++. +.-..+|+-|..++.++
T Consensus 842 ---p----~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi 879 (1133)
T KOG1943|consen 842 ---P----KLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQI 879 (1133)
T ss_pred ---c----ccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhce
Confidence 1 2233445555444222 22244566666666655
No 209
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=0.088 Score=60.77 Aligned_cols=260 Identities=15% Similarity=0.131 Sum_probs=156.1
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 000133 445 QLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVES 524 (2100)
Q Consensus 445 ~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~ 524 (2100)
-.+++++.+.++.++..|+.-+.+++.. ......-.+.-.++.+.+++....+ -+.|+.+|.|++.. +..|..+.+
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~~ll~ 81 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELRKKLLQ 81 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHHHHHH
Confidence 4578899999999999999999999853 3333333344567889999887766 67799999999985 677777776
Q ss_pred CCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC-------------CcHHHHHHHhhcCCcc---hHHHHHHHHHHHH
Q 000133 525 ADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT-------------ATISQLTALLTSDLPE---SKVYVLDALKSML 588 (2100)
Q Consensus 525 ~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~-------------~~i~~L~~lL~~~~~~---~~~~a~~aL~~l~ 588 (2100)
. .+..+++.+-+..+..-+..|..|.||+...+. ..+..+.....+.+.. .-.+.+-.+.+++
T Consensus 82 ~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls 160 (353)
T KOG2973|consen 82 D-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLS 160 (353)
T ss_pred H-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHh
Confidence 6 777888888888788888999999999885532 2223333322222222 0111112222221
Q ss_pred hccCchhHHHHhhhccchH--HHHHHHhcCCCHHHHH-HHHHHHHHHhcCChhhHHHHHhcC--chHHH-----------
Q 000133 589 SVVSFSDILREGSAANDAV--ETMIKILSSTKEETQA-KSASALAGIFETRKDLRESSIAVK--TLWSV----------- 652 (2100)
Q Consensus 589 ~~~~~~~~~~~~i~~~~~i--~~Lv~lL~s~~~~~~~-~Aa~aL~~L~~~~~~~~~~~~~~g--~v~~L----------- 652 (2100)
. .+. -|..+....-+ +.+..+ .+.+..+|+ ..+..|.|.|++. .+.+.+...+ .+|.+
T Consensus 161 ~---~~~-gR~l~~~~k~~p~~kll~f-t~~~s~vRr~GvagtlkN~cFd~-~~h~~lL~e~~~lLp~iLlPlagpee~s 234 (353)
T KOG2973|consen 161 Q---FEA-GRKLLLEPKRFPDQKLLPF-TSEDSQVRRGGVAGTLKNCCFDA-KLHEVLLDESINLLPAILLPLAGPEELS 234 (353)
T ss_pred h---hhh-hhhHhcchhhhhHhhhhcc-cccchhhhccchHHHHHhhhccc-hhHHHHhcchHHHHHHHHhhcCCccccC
Confidence 1 111 22222222211 122222 234455555 4677888888763 3444433322 22222
Q ss_pred ----------HHhh-----cCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCC-CCHHHHHHHHHHHHH
Q 000133 653 ----------MKLL-----DVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGS-PVLEVAEQATCALAN 716 (2100)
Q Consensus 653 ----------v~lL-----~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~-~~~evr~~aa~aL~~ 716 (2100)
+++| +++++.+++.-..+|.-||... ..|..+...|+-+.+-.+=+. ++++++ .++.-+.+
T Consensus 235 EEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~--~GRe~lR~kgvYpilRElhk~e~ded~~-~ace~vvq 311 (353)
T KOG2973|consen 235 EEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATR--AGREVLRSKGVYPILRELHKWEEDEDIR-EACEQVVQ 311 (353)
T ss_pred HHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhh--HhHHHHHhcCchHHHHHHhcCCCcHHHH-HHHHHHHH
Confidence 3444 3456779999999999997643 566656777766666665444 455554 45555555
Q ss_pred Hh
Q 000133 717 LI 718 (2100)
Q Consensus 717 L~ 718 (2100)
+.
T Consensus 312 ~L 313 (353)
T KOG2973|consen 312 ML 313 (353)
T ss_pred HH
Confidence 54
No 210
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.035 Score=70.29 Aligned_cols=281 Identities=17% Similarity=0.149 Sum_probs=170.2
Q ss_pred HHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCC-CHHHHHHHHHHHHH--hccCCcccHHHHHhcCChHHHHHhccC
Q 000133 419 ELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLS-SEQQQECSVALLCL--LSNENDDSKWAITAAGGIPPLVQILES 495 (2100)
Q Consensus 419 ~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~-~~~v~~~A~~aL~n--Ls~~~~~~~~~i~~~g~i~~Lv~lL~~ 495 (2100)
.|..+|+-+-.+... +.+..|...|++. ++.++..++..|+- +.+.+.+ ....|-..|..
T Consensus 398 GalyAlGLIhA~hG~--------~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~e---------iYe~lKevLy~ 460 (929)
T KOG2062|consen 398 GALYALGLIHANHGR--------GITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANEE---------IYEKLKEVLYN 460 (929)
T ss_pred chhhhhhccccCcCc--------cHHHHHHHHHHhccchhhhhhhhhhccchhcccccHH---------HHHHHHHHHhc
Confidence 455565554444322 4567888888765 55666666655443 3332222 23445555655
Q ss_pred CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhc-CChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCc
Q 000133 496 GSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKN-GSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLP 574 (2100)
Q Consensus 496 ~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~ 574 (2100)
.+.-.-|.|..+.+-+...+ .+.+ ++.-++..-+. ...++++.-+.-+.-..+....++-+-+..++.+.+|
T Consensus 461 D~AvsGEAAgi~MGl~mlGt-~~~e------aiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dkdp 533 (929)
T KOG2062|consen 461 DSAVSGEAAGIAMGLLMLGT-ANQE------AIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPLIKELLRDKDP 533 (929)
T ss_pred cchhhhhHHHHhhhhHhhCc-CcHH------HHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCCch
Confidence 55555555555555444321 1211 23333333332 3345554444434333333333445556667777777
Q ss_pred chHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHH-hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHH
Q 000133 575 ESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKI-LSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVM 653 (2100)
Q Consensus 575 ~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~l-L~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv 653 (2100)
-.|....-+++ ++++.+ .+.++|+.|+.. .++.++++|+.|..+|+-++..+++ .+|..+
T Consensus 534 ilR~~Gm~t~a-lAy~GT---------gnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~---------~~~s~V 594 (929)
T KOG2062|consen 534 ILRYGGMYTLA-LAYVGT---------GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE---------QLPSTV 594 (929)
T ss_pred hhhhhhHHHHH-HHHhcc---------CchhhHHHhhcccccccchHHHHHHHHHheeeEecChh---------hchHHH
Confidence 77766555554 333332 345668888886 6889999999999999998887664 467777
Q ss_pred Hhh-cCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcC--cHHHHHHHHc
Q 000133 654 KLL-DVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD--SEVSEKAIAE 730 (2100)
Q Consensus 654 ~lL-~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~--~~~~~~~v~~ 730 (2100)
.+| .+.++.|+-.+|.+|+--|++.. .+ .++..|-.+++++..=||.-|+.+++-++.- +..+.+ -.
T Consensus 595 ~lLses~N~HVRyGaA~ALGIaCAGtG--~~------eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pk--v~ 664 (929)
T KOG2062|consen 595 SLLSESYNPHVRYGAAMALGIACAGTG--LK------EAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPK--VN 664 (929)
T ss_pred HHHhhhcChhhhhhHHHHHhhhhcCCC--cH------HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCch--HH
Confidence 777 56788999999999998887753 22 2466666777888888999999999988722 221211 24
Q ss_pred CcHHHHHHHHccCChh--HHHHHH
Q 000133 731 EIILPATRVLCEGTIS--GKTLAA 752 (2100)
Q Consensus 731 ~~v~~L~~ll~~~~~~--~~~~Aa 752 (2100)
+....+.+...+...+ ++.+|.
T Consensus 665 ~frk~l~kvI~dKhEd~~aK~GAi 688 (929)
T KOG2062|consen 665 GFRKQLEKVINDKHEDGMAKFGAI 688 (929)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHH
Confidence 5566677777666655 455654
No 211
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.83 E-value=0.041 Score=72.09 Aligned_cols=199 Identities=15% Similarity=0.179 Sum_probs=157.5
Q ss_pred hCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCC---CHHHHHHHHHHHHHHhcCCh
Q 000133 440 GREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG---SAKAKEDSASILRNLCNHSE 516 (2100)
Q Consensus 440 ~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~vre~A~~aL~~L~~~~~ 516 (2100)
..|..|.++++|+++..+++-.-+.+=..+-.-++..+..+++.+|-.-.++.|..+ +++.|..|+.+|.-++..-+
T Consensus 510 sVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~ 589 (1387)
T KOG1517|consen 510 SVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFK 589 (1387)
T ss_pred ccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccc
Confidence 347789999999999999998888777777556788889999999999999998873 67999999999999998656
Q ss_pred hhHHHHHhCCcHHHHHHHhhcC-ChhHHHHHHHHHHHHhcCCC--------CCcHHHHHHHhhcCCcchHHHHHHHHHHH
Q 000133 517 DIRACVESADAVPALLWLLKNG-SANGKEIAAKTLNHLIHKSD--------TATISQLTALLTSDLPESKVYVLDALKSM 587 (2100)
Q Consensus 517 ~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~Aa~aL~~L~~~~~--------~~~i~~L~~lL~~~~~~~~~~a~~aL~~l 587 (2100)
-.+....+.+.+...+..|.++ .+-.++-.+-+|+.|..+-+ ..+-+.|..+|.+..+++|..|.-|||.+
T Consensus 590 lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtf 669 (1387)
T KOG1517|consen 590 LGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTF 669 (1387)
T ss_pred hhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence 6677777888888888888885 57789999999999987553 36788999999999999999999999999
Q ss_pred HhccC--chh---HHHHh-------hhccchHH----HHHHHhcCCCHHHHHHHHHHHHHHhcCChh
Q 000133 588 LSVVS--FSD---ILREG-------SAANDAVE----TMIKILSSTKEETQAKSASALAGIFETRKD 638 (2100)
Q Consensus 588 ~~~~~--~~~---~~~~~-------i~~~~~i~----~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~ 638 (2100)
....+ .++ ...+. +...+.++ .++.+++++++-++..-+.+|..+..+...
T Consensus 670 l~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~ 736 (1387)
T KOG1517|consen 670 LSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVS 736 (1387)
T ss_pred hcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHH
Confidence 88531 111 11111 11122233 677788899999999999999998877543
No 212
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=1.9 Score=56.07 Aligned_cols=426 Identities=18% Similarity=0.126 Sum_probs=205.0
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHHhcCc-chHHHHHhhcChHHHHHHHhcCCchHHHHHHHHHHHhcccHHHHHHHHhcC
Q 000133 1321 LCRILSSNCSMELKGDAAELCGVLFGNT-RIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHG 1399 (2100)
Q Consensus 1321 L~~lL~~~~~~~~~~~a~~~L~~L~~~~-~~r~~~~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~g 1399 (2100)
+.++..+. |..++...--..+.++.-. +. .-....|..-....++..|..|+++|.++-+......
T Consensus 69 ~tKlfQsk-d~~LRr~vYl~Ikels~isedv------iivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~------ 135 (865)
T KOG1078|consen 69 ITKLFQSK-DVSLRRMVYLAIKELSKISEDV------IIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQA------ 135 (865)
T ss_pred HHHHHhhc-CHHHHHHHHHHHhhccccchhh------hhhhHHHHhhccCCCcchhHHHHHHHHhhcCcchhHH------
Confidence 44455543 5555555555555553321 11 0112233333455677889999999988874322111
Q ss_pred CHHHHHHhhcCCChhHHHHHHHHHHHhhcCCc-hhhHHHHhcCcHHHHHHHhccCChhHHHHHHHHHHHHHhccCCcccc
Q 000133 1400 AVIPLVGLLYGRNYMLHEAISRALVKLGKDRP-SCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGP 1478 (2100)
Q Consensus 1400 ~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~-~~k~~i~~~~~i~~lv~~L~~~~~~~~~~aa~lL~~Ls~~~~~~~~~ 1478 (2100)
+-..+-..+-+.++.++..|+..=..+-..+. ..|... .-+.....+...-++-.+..+|+.+-.+.+..
T Consensus 136 iery~kqaivd~~~avSsaalvss~hll~~~~~~vkrw~------neiqea~~s~~~m~QyHalglLyqirk~drla--- 206 (865)
T KOG1078|consen 136 IERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKRWA------NEVQEAVNSDNIMVQYHALGLLYQIRKNDRLA--- 206 (865)
T ss_pred HHHHHHhHeeccccccchHHHHHHhhhhcccHHHHHHHH------HhhhhccCcHHHHHHHHHHHHHHHHHhhhHHH---
Confidence 11222233445666666665544333333221 111111 11111112222222333444555554444332
Q ss_pred cccCchHHHHHHhccCC-CCchh----HhHHHHHHHHhhcCCCcccccccccCCChHhhhhccCCCCHHHHHHHHHHHHH
Q 000133 1479 SAAKVVEPLFLLLTRSE-FGPDG----QHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSH 1553 (2100)
Q Consensus 1479 ~~~~~v~~Ll~ll~~~~-~~~~~----~~~A~~~L~nL~~~~~~~~~~~~~~~~~l~~Lv~~L~~~~~~vq~~a~~aL~~ 1553 (2100)
+..++..+.+.. .++-. .+.+.+.+.+ . .......++.+=++|.+....+..+++.++.+
T Consensus 207 -----~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~----~------~~~~s~~~~fl~s~l~~K~emV~~EaArai~~ 271 (865)
T KOG1078|consen 207 -----VSKLVQKFTRGSLKSPLAVCMLIRIASELLKE----N------QQADSPLFPFLESCLRHKSEMVIYEAARAIVS 271 (865)
T ss_pred -----HHHHHHHHccccccchhHHHHHHHHHHHHhhh----c------ccchhhHHHHHHHHHhchhHHHHHHHHHHHhh
Confidence 344444444311 11211 1222223222 1 01333456666777888999999999999998
Q ss_pred hhccccccccccccCchHHHHHHhccCCHHHHHHHHHHHHHhhcCChhHHHhcc-ChHHHH-------------HHhccc
Q 000133 1554 LLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEG-GVTELS-------------KIILQA 1619 (2100)
Q Consensus 1554 l~~~~~~~~~l~~~g~i~~Lv~lL~s~~~~vr~~Al~AL~~Ls~~~~n~l~~~G-~i~~Ll-------------~lL~~~ 1619 (2100)
+... +-..+. .++..|.-++++....+|.+|.+.|.+++...|....... -+.+|+ -+|.++
T Consensus 272 l~~~--~~r~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG 347 (865)
T KOG1078|consen 272 LPNT--NSRELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTG 347 (865)
T ss_pred cccc--CHhhcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHHHHHHHhc
Confidence 8652 111121 2778888888999999999999999999977665210000 011111 122223
Q ss_pred CCCchHHHHHHHHHHHHhhhcccchhh------------h--cccHHHHHHHhhc-CCHHHHHHHHHHHHHhccCChhhH
Q 000133 1620 DPSLPHALWESAASVLSSILQFSSEFY------------L--EVPVAVLVRLLRS-GSEGTVIGSLNALLVLESDDGTSA 1684 (2100)
Q Consensus 1620 ~~~~~~~l~e~a~~~L~~i~~~~~~~~------------~--~~~v~~Lv~ll~~-~~~~~~~~a~~aL~~L~~~~~~~~ 1684 (2100)
......++..+....++++...-.... . ..-+.-|-++|.. ++-+-+.....++..+....+...
T Consensus 348 ~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsK 427 (865)
T KOG1078|consen 348 TESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSK 427 (865)
T ss_pred chhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchh
Confidence 333334444444444444432111000 0 0112233334433 223455555555555444333222
Q ss_pred HHHHHcccHHHHHHHHhccCcHHHHHHHHHHHhcCchhhhhhhchhhhhhhhhhccChhhHHHHHHHHHHHHhcchhh-h
Q 000133 1685 EAMAESGAIEALLELLRSHQCEETAARLLEVLLNNGKIRESKATKSAILPLSQYLLDPQTQAQQARLLATLALGDLFQ-N 1763 (2100)
Q Consensus 1685 ~~i~~~g~i~~Li~lL~s~~~~~~a~~lL~~L~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~~~~A~~~l~~~~~-~ 1763 (2100)
.-+...|..|+++.+....+.+.|.-|..++..-.. -.+.|..+- +--..+....++.|..+++.... .
T Consensus 428 -----e~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~--Pskyir~iy---NRviLEn~ivRaaAv~alaKfg~~~ 497 (865)
T KOG1078|consen 428 -----ERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPN--PSKYIRFIY---NRVILENAIVRAAAVSALAKFGAQD 497 (865)
T ss_pred -----hHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCC--cchhhHHHh---hhhhhhhhhhHHHHHHHHHHHhcCC
Confidence 246777888888866788888888888765422211 112222211 11111222223344444433321 1
Q ss_pred hhHHHhhhhhchHHHHHHhhhcCCCHHHHHHHHHHHHHhh
Q 000133 1764 EGLARSADAVSACRALVNVLEEQPTEEMKVVAICALQNLV 1803 (2100)
Q Consensus 1764 ~~l~~~~~~~~a~~~Lv~lL~~~~~~~~~~~A~~aL~~l~ 1803 (2100)
+.+.. +-...|..++.+. +.++|+.|-.+|..+.
T Consensus 498 ~~l~~-----sI~vllkRc~~D~-DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 498 VVLLP-----SILVLLKRCLNDS-DDEVRDRATFYLKNLE 531 (865)
T ss_pred CCccc-----cHHHHHHHHhcCc-hHHHHHHHHHHHHHhh
Confidence 11111 1123456677665 9999999999988877
No 213
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=0.0075 Score=73.27 Aligned_cols=311 Identities=13% Similarity=0.072 Sum_probs=191.8
Q ss_pred HHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCC
Q 000133 417 QEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG 496 (2100)
Q Consensus 417 ~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~ 496 (2100)
-.+++.+|..++..-.-.+.-+.+....++|+++|.+++..+...+...+||+.-.....+..+.+.|.|..|++++.+.
T Consensus 406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK 485 (743)
T COG5369 406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK 485 (743)
T ss_pred HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence 34667778888877555666777788899999999998888888899999999877778889999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhcCCh-hhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcc
Q 000133 497 SAKAKEDSASILRNLCNHSE-DIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPE 575 (2100)
Q Consensus 497 ~~~vre~A~~aL~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~ 575 (2100)
+...|.+..|+|.++..... +.+-.+...-++..++++..++.+.++....+.|.|+.++.... ....+
T Consensus 486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~kn----------Ekskd 555 (743)
T COG5369 486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKN----------EKSKD 555 (743)
T ss_pred hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccc----------cccce
Confidence 99999999999999986543 34555667778899999999999999999999999998743210 00111
Q ss_pred hHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc-CchHHHHH
Q 000133 576 SKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAV-KTLWSVMK 654 (2100)
Q Consensus 576 ~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~-g~v~~Lv~ 654 (2100)
+ +....+ ++.. .+.|++.+.+.+|-.-...+..|.+++..+++.++.+... ..+.....
T Consensus 556 v----------~~K~~p-----~~yl-----fk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~e 615 (743)
T COG5369 556 V----------FIKATP-----RRYL-----FKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFE 615 (743)
T ss_pred e----------EEecCh-----HHHH-----HHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHH
Confidence 0 000000 1111 4556677777777666666777888777755544443322 22222222
Q ss_pred hh---------cCCC--HHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCc--
Q 000133 655 LL---------DVGS--ECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDS-- 721 (2100)
Q Consensus 655 lL---------~~~~--~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~-- 721 (2100)
.+ ..++ ..+.-.-.-...++..+ .+..+............-+--..++.|.--.+.|...|+.+..
T Consensus 616 il~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~-~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~ 694 (743)
T COG5369 616 ILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSEN-SDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDG 694 (743)
T ss_pred HHHHHcccCCCCCCCCcccccCccceeeeccccc-ccccccceecCCCccccccccCCCchhhhhccceEEEecccCccC
Confidence 22 1111 11111111122222111 0100000000001110001112356667677777777776432
Q ss_pred --------HHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHH
Q 000133 722 --------EVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARL 758 (2100)
Q Consensus 722 --------~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l 758 (2100)
+-+....+.|.-+.|.+.-..++..+|+.+-.||.++
T Consensus 695 ~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 695 SEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred CccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence 2233334566666666666666667999988888764
No 214
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.69 E-value=0.0031 Score=79.69 Aligned_cols=101 Identities=20% Similarity=0.314 Sum_probs=78.6
Q ss_pred CCceeeeeccchhhhhh-CC-CcceEEEecC--CCCCccccccccCCCccccccceeccccC-CCCCeEEEEeecCCccC
Q 000133 1979 GTLVVIIKRGNNMKQSV-GN-PSVYCKLTLG--NTPPRQTKIVSTGPNPEWEESFAWSFEIP-PKGQKLHISCKNKSKMG 2053 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~~-~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 2053 (2100)
..|+|+|++..++.+.= ++ +.-++++.+. ...-+||||+++..||+|+|+|.|.+..- =.++.|++.+++-+.|+
T Consensus 167 ~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drfs 246 (421)
T KOG1028|consen 167 NLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRFS 246 (421)
T ss_pred CEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCCcc
Confidence 46899999999998765 33 5566666665 34788999999999999999999984433 23559999999999998
Q ss_pred Cccc-ceEEEEEeeEEeecccccceee
Q 000133 2054 KSSF-GKVTIQIDRVVMLGAVAGEYTL 2079 (2100)
Q Consensus 2054 ~~~~-~~~~~~~~~~~~~~~~~~~~~~ 2079 (2100)
+..+ |.|.|.++.|--.+...--+.|
T Consensus 247 r~~~iGev~~~l~~~~~~~~~~~w~~l 273 (421)
T KOG1028|consen 247 RHDFIGEVILPLGEVDLLSTTLFWKDL 273 (421)
T ss_pred cccEEEEEEecCccccccccceeeecc
Confidence 8887 9999999888776653333444
No 215
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.64 E-value=0.23 Score=62.85 Aligned_cols=295 Identities=19% Similarity=0.154 Sum_probs=177.5
Q ss_pred hhHHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHhhcChHHHHHHHhcCCc--hHHHHHHHHHHHhcc-cHHHHH
Q 000133 1317 AVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFS--PAQHSVVRALDKLVD-DEQLAE 1393 (2100)
Q Consensus 1317 al~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~~~~~~~i~~Lv~lL~~~~~--~~~~~A~~aL~~L~~-~~~~~~ 1393 (2100)
++..+..=|.+. ++...-.|+...+++..- +.+. .+-+.+-++|.+++. -++..|+-.|.+++. .+.
T Consensus 112 vin~iknDL~sr-n~~fv~LAL~~I~niG~r-e~~e-----a~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spD--- 181 (938)
T KOG1077|consen 112 VINSIKNDLSSR-NPTFVCLALHCIANIGSR-EMAE-----AFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPD--- 181 (938)
T ss_pred HHHHHHhhhhcC-CcHHHHHHHHHHHhhccH-hHHH-----HhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcc---
Confidence 455555545443 445566666766666332 1111 122334467777653 567777777777774 221
Q ss_pred HHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCch-hhHHHHhcCcHHHHHHHhcc-----CCh---------hHH
Q 000133 1394 LVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPS-CKLEMVKAGVIESVLDILHE-----APD---------FLC 1458 (2100)
Q Consensus 1394 ~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~-~k~~i~~~~~i~~lv~~L~~-----~~~---------~~~ 1458 (2100)
.+-..+-..+++.+|++.+..|.-++...+-.+++.+|+ .+. +++..+.-|.+ +.+ .-.
T Consensus 182 l~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~------~~~~avs~L~riv~~~~t~~qdYTyy~vP~P 255 (938)
T KOG1077|consen 182 LVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKT------CLPLAVSRLSRIVVVVGTSLQDYTYYFVPAP 255 (938)
T ss_pred ccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhh------hHHHHHHHHHHHHhhcccchhhceeecCCCh
Confidence 111235578999999999999999999888888887654 333 23333222221 111 011
Q ss_pred HHHHHHHHHHHhccCCcccccccCchHHHHHHhccCC---CCchhHhH-HHH----HHHHhhcCCCcccccccccCCChH
Q 000133 1459 SAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSE---FGPDGQHS-ALQ----VLVNILEHPQCRADYSLTSHQAIE 1530 (2100)
Q Consensus 1459 ~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~---~~~~~~~~-A~~----~L~nL~~~~~~~~~~~~~~~~~l~ 1530 (2100)
-...++++.|...+.......-....+.+-.+|...+ ....+|+. |-. -..+|..+.++... .-...+.
T Consensus 256 WL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~---ll~~~~~ 332 (938)
T KOG1077|consen 256 WLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPE---LLSRAVN 332 (938)
T ss_pred HHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHH---HHHHHHH
Confidence 2356677888887765544444444444545554444 23344443 322 22233333222222 1224567
Q ss_pred hhhhccCCCCHHHHHHHHHHHHHhhccccccccccccCchHHHHHHhc-cCCHHHHHHHHHHHHHhhcCChhHHHhccCh
Q 000133 1531 PLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLG-SGIHILQQRAVKALVSIALTWPNEIAKEGGV 1609 (2100)
Q Consensus 1531 ~Lv~~L~~~~~~vq~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~lL~-s~~~~vr~~Al~AL~~Ls~~~~n~l~~~G~i 1609 (2100)
.|-++|.+....+|-.+++.+..|+..+.....+..+ .+..+..|+ ..+-.+|+.|+.-|..++... |+ .-+|
T Consensus 333 ~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~-Na---k~IV 406 (938)
T KOG1077|consen 333 QLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVS-NA---KQIV 406 (938)
T ss_pred HHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchh-hH---HHHH
Confidence 7788888999999999999999998876666555554 577788887 688999999999999888654 32 1135
Q ss_pred HHHHHHhcccCCCchHHHHHHHHHHHHh
Q 000133 1610 TELSKIILQADPSLPHALWESAASVLSS 1637 (2100)
Q Consensus 1610 ~~Ll~lL~~~~~~~~~~l~e~a~~~L~~ 1637 (2100)
..|+..|.+.|.+.+..+.- -.++|+.
T Consensus 407 ~elLqYL~tAd~sireeivl-KvAILaE 433 (938)
T KOG1077|consen 407 AELLQYLETADYSIREEIVL-KVAILAE 433 (938)
T ss_pred HHHHHHHhhcchHHHHHHHH-HHHHHHH
Confidence 66888888888877777666 3344443
No 216
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.61 E-value=6.4 Score=55.19 Aligned_cols=416 Identities=13% Similarity=0.113 Sum_probs=214.2
Q ss_pred ccCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcchhhhhhhhhcCChHHHHHhhccCChh---------------------
Q 000133 1229 AFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLER--------------------- 1287 (2100)
Q Consensus 1229 ~~~al~~Li~~L~~~~~~~r~~Aa~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~--------------------- 1287 (2100)
.......+..+|.+.++-.+..|++-|+-.-+. -+.-...+.+..|+.-|..+...
T Consensus 859 ~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYel---gd~~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~ 935 (1702)
T KOG0915|consen 859 LKEIQEAFSHLLSDNDEFSQDVASRGLGLVYEL---GDSSLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPD 935 (1702)
T ss_pred cHHHHHHHHHHhcccHHHHHHHHhcCceEEEec---CCchhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCC
Confidence 344557888888888888888888766533221 11122244455566555433211
Q ss_pred -hHHHHHHHHHHhhcCCchhhHHHHhhhcchhHHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHhhcChHHHHHH
Q 000133 1288 -EQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSL 1366 (2100)
Q Consensus 1288 -~~~~A~~aL~~La~~~~~~~~~~~~v~~gal~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~~~~~~~i~~Lv~l 1366 (2100)
..-....=|.+||++=. +...+-..|.+-.++..+.-+.-|+-=++.++.+..-.....-...||.|...
T Consensus 936 Gg~isTYKELc~LASdl~---------qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY 1006 (1702)
T KOG0915|consen 936 GGKISTYKELCNLASDLG---------QPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRY 1006 (1702)
T ss_pred CCcchHHHHHHHHHhhcC---------ChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhh
Confidence 11123333444442110 01123334444444333444455555555565554322222333455555555
Q ss_pred HhcCCchHHHHHHHHHHHhc-ccHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCch--hhHHHHhcCcH
Q 000133 1367 LVTEFSPAQHSVVRALDKLV-DDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPS--CKLEMVKAGVI 1443 (2100)
Q Consensus 1367 L~~~~~~~~~~A~~aL~~L~-~~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~--~k~~i~~~~~i 1443 (2100)
=.+++..++ .|...+|+.. .+.......+-..+.+-|+.-+.+..-+||++++.||..+-..+|. .++.+ ....
T Consensus 1007 ~yDP~~~Vq-~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~l--pelw 1083 (1702)
T KOG0915|consen 1007 QYDPDKKVQ-DAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKL--PELW 1083 (1702)
T ss_pred ccCCcHHHH-HHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHH--HHHH
Confidence 556666554 4566666666 5656666666777888898889999999999999999999877532 22222 3456
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHHHhccC-Cc---ccccccCchHHHHHHhccCC---CCchhHhHHHHHHHHhhcCCC
Q 000133 1444 ESVLDILHEAPDFLCSAFAELLRILTNNAG-IA---KGPSAAKVVEPLFLLLTRSE---FGPDGQHSALQVLVNILEHPQ 1516 (2100)
Q Consensus 1444 ~~lv~~L~~~~~~~~~~aa~lL~~Ls~~~~-~~---~~~~~~~~v~~Ll~ll~~~~---~~~~~~~~A~~~L~nL~~~~~ 1516 (2100)
..+.+...+-.+.+|.++-.++..|++... .+ ........+..++..|-++. .-+.+++-++.++..|.+...
T Consensus 1084 ~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg 1163 (1702)
T KOG0915|consen 1084 EAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSG 1163 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhch
Confidence 666666666677788877667666664321 11 11112233444444433222 236677778999998876655
Q ss_pred cccccccccCCChHhhhhccCCCCHHHHHHHHHHHHHhhccccccccccccCchHHHHHHhccCCHHHHHHHHHHHHHhh
Q 000133 1517 CRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIA 1596 (2100)
Q Consensus 1517 ~~~~~~~~~~~~l~~Lv~~L~~~~~~vq~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~lL~s~~~~vr~~Al~AL~~Ls 1596 (2100)
.. ++..-...++-|++..++-.+.+-..-+.=+.+... .+++.+-.-...++|.. .++..+-
T Consensus 1164 ~~--lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~-----------ealDt~R~s~aksspmm-----eTi~~ci 1225 (1702)
T KOG0915|consen 1164 KE--LKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIET-----------EALDTLRASAAKSSPMM-----ETINKCI 1225 (1702)
T ss_pred hh--hcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHH-----------HHHHHHHHhhhcCCcHH-----HHHHHHH
Confidence 53 333445556666666665444443322211111111 11111111111111111 1222222
Q ss_pred cCChhHHHhccChHHHHHHhcccCCCchHHHHHHHHHHHHhhh-cccchhh-hcc-cHHHHHHHhhcCCHHHHHHHHHHH
Q 000133 1597 LTWPNEIAKEGGVTELSKIILQADPSLPHALWESAASVLSSIL-QFSSEFY-LEV-PVAVLVRLLRSGSEGTVIGSLNAL 1673 (2100)
Q Consensus 1597 ~~~~n~l~~~G~i~~Ll~lL~~~~~~~~~~l~e~a~~~L~~i~-~~~~~~~-~~~-~v~~Lv~ll~~~~~~~~~~a~~aL 1673 (2100)
..-+..+..+ .+|.+.++++.+. +...... ++..++-++ +.+.++. ..| -+..++-.+++.++.++.....|.
T Consensus 1226 ~~iD~~vLee-lip~l~el~R~sV-gl~Tkvg--~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAm 1301 (1702)
T KOG0915|consen 1226 NYIDISVLEE-LIPRLTELVRGSV-GLGTKVG--CASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAM 1301 (1702)
T ss_pred HhhhHHHHHH-HHHHHHHHHhccC-CCCcchh--HHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHH
Confidence 2222223322 5788888887632 2222222 222333332 2222221 111 245556666777888888888888
Q ss_pred HHhccCCh
Q 000133 1674 LVLESDDG 1681 (2100)
Q Consensus 1674 ~~L~~~~~ 1681 (2100)
..|.+-..
T Consensus 1302 G~L~k~Ss 1309 (1702)
T KOG0915|consen 1302 GYLAKFSS 1309 (1702)
T ss_pred HHHHhcCC
Confidence 88876444
No 217
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.42 E-value=4 Score=53.34 Aligned_cols=138 Identities=16% Similarity=0.051 Sum_probs=92.1
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 000133 607 VETMIKILS-STKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVA 685 (2100)
Q Consensus 607 i~~Lv~lL~-s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~ 685 (2100)
+..|..+|+ ++.-+.++....++..+...+++.++ -++..|+..+.+... ..-+.+.|.-+....+..
T Consensus 393 m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDce~--~~i~~rILhlLG~EgP~a---- 461 (865)
T KOG1078|consen 393 MNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDCEF--TQIAVRILHLLGKEGPKA---- 461 (865)
T ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhccc--hHHHHHHHHHHhccCCCC----
Confidence 666777665 46678888999999998887676544 467788888866532 233444444443322210
Q ss_pred HHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHH
Q 000133 686 AVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLL 759 (2100)
Q Consensus 686 ~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~ 759 (2100)
..-...+..+...+--.+..+|..|..||.++....+.-. ..+...|.+++.+.++++|..|.-+|..+.
T Consensus 462 ~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~----~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 462 PNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLL----PSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred CCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCcc----ccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 1123445555555555678899999999999984433222 466777888998899999999998888776
No 218
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.40 E-value=0.093 Score=68.98 Aligned_cols=237 Identities=16% Similarity=0.188 Sum_probs=155.8
Q ss_pred hHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHH
Q 000133 486 IPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQL 565 (2100)
Q Consensus 486 i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L 565 (2100)
+|..++.|-+ .-.|-+|...|..+-...+=.-..-..-|..|..++||++...+.|-.-+.+=..+
T Consensus 474 LPiVLQVLLS--QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKI------------ 539 (1387)
T KOG1517|consen 474 LPIVLQVLLS--QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKI------------ 539 (1387)
T ss_pred cchHHHHHHH--HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHH------------
Confidence 4444554432 23456677777777654333333345678889999999987666553222221121
Q ss_pred HHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcC---CCHHHHHHHHHHHHHHhcCChhhHHH
Q 000133 566 TALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSS---TKEETQAKSASALAGIFETRKDLRES 642 (2100)
Q Consensus 566 ~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s---~~~~~~~~Aa~aL~~L~~~~~~~~~~ 642 (2100)
.++.+ ..|.-..+.+|...++..|.. -+++-|.-|+..|+.+.++.+-.+++
T Consensus 540 ----------------------LAvD~---SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~a 594 (1387)
T KOG1517|consen 540 ----------------------LAVDP---SCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKA 594 (1387)
T ss_pred ----------------------HhcCc---hhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHH
Confidence 11111 012223334445555555544 24688889999999999998778888
Q ss_pred HHhcCchHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcC-
Q 000133 643 SIAVKTLWSVMKLLDVG-SECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD- 720 (2100)
Q Consensus 643 ~~~~g~v~~Lv~lL~~~-~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~- 720 (2100)
..+.+.+.+....+.++ .+-.+.-.+-+|+.|-.... ..|-.-.+.++.+.|+.++.++.+|||..|..||+.++.+
T Consensus 595 cl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~-~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 595 CLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYD-EARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred hccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcc-hhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 88889999999999885 56677789999999976553 4555566788999999999999999999999999999843
Q ss_pred ----cHHHHHH-----------HHcCcHH----HHHHHHccCChhHHHHHHHHHHHHHhcC
Q 000133 721 ----SEVSEKA-----------IAEEIIL----PATRVLCEGTISGKTLAAAAIARLLHSR 762 (2100)
Q Consensus 721 ----~~~~~~~-----------v~~~~v~----~L~~ll~~~~~~~~~~Aa~aL~~l~~~~ 762 (2100)
.+..... ..++.+. .++.++++.++-+|.+.+-+|.+.....
T Consensus 674 ~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 674 SDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGY 734 (1387)
T ss_pred ccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhh
Confidence 1111111 1223333 5666667777777777777777766443
No 219
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.34 E-value=0.019 Score=69.91 Aligned_cols=306 Identities=15% Similarity=0.152 Sum_probs=184.3
Q ss_pred HHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCC
Q 000133 162 LLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNE 241 (2100)
Q Consensus 162 ~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 241 (2100)
.++.+|..++.+-...|.-+.+...++.|+++|+.|+..+.--+...+.+.+....+-.+.+.+.|.+..|+.++.+. |
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK-D 486 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK-D 486 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc-h
Confidence 456677888766666666678889999999999998777777788888888888887888899999999999999875 4
Q ss_pred HHHHHHHHHHHHHhhcCChHh-HHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhcccc
Q 000133 242 ASVRAEAAGALKSLSDHCKDA-RREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQS 320 (2100)
Q Consensus 242 ~~v~~~Aa~aL~~Ls~~~~~~-~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~ 320 (2100)
..+|....|+|+++..++.++ +-.....-|+..++.....++ -.+|+.....|+|+..+.... +.
T Consensus 487 daLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc---------~~vq~q~lQilrNftc~~~kn-Ek---- 552 (743)
T COG5369 487 DALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPC---------FKVQHQVLQILRNFTCDTSKN-EK---- 552 (743)
T ss_pred hhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcc---------cccHHHHHHHHHhcccccccc-cc----
Confidence 589999999999999877654 335667788999999987764 678999999999987632110 00
Q ss_pred ccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCch-hhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhcc
Q 000133 321 LESCSSPAQVADTLGALASALMIYDSKAESTKPSDPL-IVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENS 399 (2100)
Q Consensus 321 ~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~-~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~ 399 (2100)
+-++.. ..+|- -....|.+-++...+-.+++..-.-+...+.+...+..+.+.
T Consensus 553 --skdv~~------------------------K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q 606 (743)
T COG5369 553 --SKDVFI------------------------KATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQ 606 (743)
T ss_pred --cceeEE------------------------ecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhH
Confidence 000000 01221 244455555666666555665444333335555544433332
Q ss_pred c-cHHHHHHhhc----C-------CCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhh---CCCCHHHHHHHHH
Q 000133 400 E-AKRLLVGLIT----M-------ATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLL---GLSSEQQQECSVA 464 (2100)
Q Consensus 400 g-~i~~Lv~lL~----~-------~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL---~s~~~~v~~~A~~ 464 (2100)
. .+..+.+.|. . .+..+--.-.....++..+.+.+.+.+.-. |.+=..= ..++.+.-.+..|
T Consensus 607 ~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~---p~~D~~~~d~~~~NdE~~~agiw 683 (743)
T COG5369 607 EDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTT---PHLDNMKKDSTTRNDELSIAGIW 683 (743)
T ss_pred HHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecC---CCccccccccCCCchhhhhccce
Confidence 1 2222222221 0 011121122223333333323332221100 2221111 1235566667777
Q ss_pred HHHHhccCCcc----------cHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHh
Q 000133 465 LLCLLSNENDD----------SKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLC 512 (2100)
Q Consensus 465 aL~nLs~~~~~----------~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~ 512 (2100)
...|+.. ..+ ..+.+.+.|.-+.|+.+-.++++.+|+.+-.+|.++-
T Consensus 684 ~~in~~w-~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l~ 740 (743)
T COG5369 684 IIINLSW-KEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENLR 740 (743)
T ss_pred EEEeccc-CccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhhh
Confidence 7777653 222 2333444444455555556678999999999998873
No 220
>PLN02952 phosphoinositide phospholipase C
Probab=96.33 E-value=0.0089 Score=77.21 Aligned_cols=117 Identities=21% Similarity=0.371 Sum_probs=80.6
Q ss_pred CCCceeeeeccchhh--------hhhCCCc-ceEEEecC---CCCCccccccccCCCccccccceeccccCCCCCeEEEE
Q 000133 1978 PGTLVVIIKRGNNMK--------QSVGNPS-VYCKLTLG---NTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHIS 2045 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~--------~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2045 (2100)
+..|+|+|+-+..+. ..|.... -+...-+| |...++||+|.+|-||+|++.|.|.+..|. =-.+.++
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PE-LAllrf~ 547 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPE-LALLRIE 547 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCC-ccEEEEE
Confidence 356899998775542 2232222 33444555 567789999999999999999999888643 3478999
Q ss_pred eecCCccCCccc-ceEEEEEeeEEeecccccceeecCC-CCCCCCcceEEEEEec
Q 000133 2046 CKNKSKMGKSSF-GKVTIQIDRVVMLGAVAGEYTLLPE-SKSGPSRNLEIEFLWS 2098 (2100)
Q Consensus 2046 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 2098 (2100)
|++++.++++.| |..+|+++.... |-. ...|... ++.=++-+|.|+|.|.
T Consensus 548 V~D~D~~~~ddfiGq~~lPv~~Lr~-GyR--~VpL~~~~G~~l~~a~Llv~f~~~ 599 (599)
T PLN02952 548 VREYDMSEKDDFGGQTCLPVSELRP-GIR--SVPLHDKKGEKLKNVRLLMRFIFV 599 (599)
T ss_pred EEecCCCCCCCeEEEEEcchhHhcC-Cce--eEeCcCCCCCCCCCEEEEEEEEeC
Confidence 999998877665 999999987654 322 4455322 3332334688888873
No 221
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.33 E-value=0.061 Score=63.12 Aligned_cols=151 Identities=18% Similarity=0.128 Sum_probs=101.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 000133 607 VETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAA 686 (2100)
Q Consensus 607 i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~ 686 (2100)
+..+...+.+....+...|+.++..++..-....+ ......+|+|++.+.+.+..++..|..+|..++.+.+...+.
T Consensus 55 ~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~-~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-- 131 (228)
T PF12348_consen 55 LDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFE-PYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-- 131 (228)
T ss_dssp -HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGH-HHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH--
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHH-HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH--
Confidence 45666677777788899999999999876443322 224468999999999999899999999999998765311111
Q ss_pred HhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcH---H--HHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhc
Q 000133 687 VARDALSPLVVLAGSPVLEVAEQATCALANLILDSE---V--SEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHS 761 (2100)
Q Consensus 687 ~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~---~--~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~ 761 (2100)
.++.+...+.+.++.+|..++..|..++...+ . .....-+.+++.+.+.+.+.++++|..|-.++..+...
T Consensus 132 ----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 132 ----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp ----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 16677788899999999999999999884322 1 11222367899999999999999999999999888765
Q ss_pred Ccc
Q 000133 762 RKI 764 (2100)
Q Consensus 762 ~~~ 764 (2100)
.+.
T Consensus 208 ~~~ 210 (228)
T PF12348_consen 208 FPE 210 (228)
T ss_dssp H-H
T ss_pred CCH
Confidence 443
No 222
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=96.32 E-value=0.17 Score=65.14 Aligned_cols=272 Identities=15% Similarity=0.125 Sum_probs=164.6
Q ss_pred HHHHHhccCChhhHHHHHhcCCHHHHHHhH----------ccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHH
Q 000133 165 GALRNLSTSTEGFWAATVQAGGIDILVKLL----------TLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLK 234 (2100)
Q Consensus 165 ~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL----------~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~ 234 (2100)
.+|+-++.+..+ ...+....++..|.++- ...++.+...|.++|+|....++..+..+.+.|..+.+++
T Consensus 3 ~~LRiLsRd~~~-~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~ 81 (446)
T PF10165_consen 3 ETLRILSRDPTG-LDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCE 81 (446)
T ss_pred HHHHHHccCccc-chhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHH
Confidence 445555554432 33355555566666655 3467889999999999999999989999999999999999
Q ss_pred HhcCCC----CHHHHHHHHHHHHHhhcCChHhHHHHHhC-CChHHHHHhhcCCCcchh--------hhhhhHHHHHHHHH
Q 000133 235 LLGSGN----EASVRAEAAGALKSLSDHCKDARREIAGS-NGIPAMINATIAPSKEFM--------QGEYAQALQENAMC 301 (2100)
Q Consensus 235 lL~~~~----~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~-g~i~~Lv~ll~~~~~e~~--------~~~~~~~l~~~a~~ 301 (2100)
.|+... +.++..-....|.-++...++.+..+++. +|+..++..+...-+... ..+........+..
T Consensus 82 ~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLK 161 (446)
T PF10165_consen 82 RLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILK 161 (446)
T ss_pred HHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHH
Confidence 998762 35788889999988887777777666654 888888777643321110 01234455666777
Q ss_pred HHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhc----CCCCChHHHH
Q 000133 302 ALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQF----KPRLPFLVQE 377 (2100)
Q Consensus 302 aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL----~~~~~~~vq~ 377 (2100)
.+.|+....+.... ......+..++.++ ..++ ...+......
T Consensus 162 llFNit~~~~~~~~---------------~~~~~~~~~l~~il-------------------~~~l~~~~~~~~l~~~~~ 207 (446)
T PF10165_consen 162 LLFNITLHYPKSVP---------------EEFSPSIPHLVSIL-------------------RRLLPPPPSSPPLDPPHS 207 (446)
T ss_pred HHHHhhhccCcccc---------------hhhhHHHHHHHHHH-------------------HHHhccCCCCCcchhhHH
Confidence 77777653221110 01122233333322 2221 1111223455
Q ss_pred HHHHHHHHH-hCCCcc-----------chhhhccccHHHHHHhhcC-----C---CHHHHHHHHHHHHHhhccCccchHH
Q 000133 378 RTIEALASL-YGNPLL-----------SIKLENSEAKRLLVGLITM-----A---TNEVQEELVRALLKLCNNEGSLWRA 437 (2100)
Q Consensus 378 ~aa~aL~~L-~~~~~~-----------~~~l~~~g~i~~Lv~lL~~-----~---~~~v~~~A~~aL~~L~~~~~~~~~~ 437 (2100)
.++.+|.++ ..+... ...-.....+..|+.+|+. . -.+.....+..|.+++..+...++.
T Consensus 208 ~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~ 287 (446)
T PF10165_consen 208 HAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKY 287 (446)
T ss_pred HHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHH
Confidence 556666555 111111 0111222345555555541 1 1244556677777777776665555
Q ss_pred HHh---------------CCcH-HHHHHhhCCCCHHHHHHHHHHHHHhcc
Q 000133 438 LQG---------------REGI-QLLISLLGLSSEQQQECSVALLCLLSN 471 (2100)
Q Consensus 438 i~~---------------~g~i-~~Lv~lL~s~~~~v~~~A~~aL~nLs~ 471 (2100)
+.. .+.+ ..|++++.++.+.++..++..|..||.
T Consensus 288 lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 288 LRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCK 337 (446)
T ss_pred HHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 543 2233 689999999889999999999999985
No 223
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.27 E-value=0.0067 Score=53.19 Aligned_cols=55 Identities=22% Similarity=0.136 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHH
Q 000133 704 LEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARL 758 (2100)
Q Consensus 704 ~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l 758 (2100)
+.+|..|+++|+++........+....++++.|..+++++++.+|..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5799999999999887777667778899999999999999999999999999865
No 224
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.26 Score=62.92 Aligned_cols=183 Identities=13% Similarity=0.165 Sum_probs=121.0
Q ss_pred HHhhcCCCCChHHHHHHHHHHHHH-hCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhC
Q 000133 363 LVNQFKPRLPFLVQERTIEALASL-YGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGR 441 (2100)
Q Consensus 363 Lv~lL~~~~~~~vq~~aa~aL~~L-~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~ 441 (2100)
+++.-..+.-+.+++..+..++-. +... .++-+.+-+++.+.++-.|......++--..+..+ .
T Consensus 489 m~~Ya~ETQHeki~RGl~vGiaL~~ygrq--------e~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn-------n 553 (929)
T KOG2062|consen 489 MLTYAQETQHEKIIRGLAVGIALVVYGRQ--------EDADPLIKELLRDKDPILRYGGMYTLALAYVGTGN-------N 553 (929)
T ss_pred HHHHhhhhhHHHHHHHHHHhHHHHHhhhh--------hhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc-------h
Confidence 333333333445566666666544 3322 23444555678888998888877777654444333 3
Q ss_pred CcHHHHHHh-hCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCC-CHHHHHHHHHHHHHHhcCChhhH
Q 000133 442 EGIQLLISL-LGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG-SAKAKEDSASILRNLCNHSEDIR 519 (2100)
Q Consensus 442 g~i~~Lv~l-L~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~vre~A~~aL~~L~~~~~~~~ 519 (2100)
++|..|++. ..+.+++|++.|+.+|+-++..+++ ..|..+++|..+ ++.+|..++.+|+-.|.. ...+
T Consensus 554 kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~---------~~~s~V~lLses~N~HVRyGaA~ALGIaCAG-tG~~ 623 (929)
T KOG2062|consen 554 KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE---------QLPSTVSLLSESYNPHVRYGAAMALGIACAG-TGLK 623 (929)
T ss_pred hhHHHhhcccccccchHHHHHHHHHheeeEecChh---------hchHHHHHHhhhcChhhhhhHHHHHhhhhcC-CCcH
Confidence 778888887 7788999999999999999876666 578888888755 999999999999998874 3444
Q ss_pred HHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC-------CcHHHHHHHhhcCCcch
Q 000133 520 ACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT-------ATISQLTALLTSDLPES 576 (2100)
Q Consensus 520 ~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~-------~~i~~L~~lL~~~~~~~ 576 (2100)
.++ ..|-.+..+...-+++.|+-++.-+..+..+ +...++..++.+.+.+.
T Consensus 624 eAi------~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 624 EAI------NLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDG 681 (929)
T ss_pred HHH------HHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhHH
Confidence 332 2222333355556899998888765443322 44555666676666654
No 225
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.25 E-value=0.031 Score=65.67 Aligned_cols=186 Identities=17% Similarity=0.184 Sum_probs=113.7
Q ss_pred CCCCHHHHHHHHHHHHHhccCC--cccHHHHHhc--CChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCc
Q 000133 452 GLSSEQQQECSVALLCLLSNEN--DDSKWAITAA--GGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADA 527 (2100)
Q Consensus 452 ~s~~~~v~~~A~~aL~nLs~~~--~~~~~~i~~~--g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~ 527 (2100)
.+.+.+.+..+..-|..+..++ ......+.+. ..+..+...+.+....+...|+.++..++......-... -...
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-ADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHHH
Confidence 5567788888888888887655 2222222111 355677777777777788889999999886422221111 2347
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHHhcCCC--CCc-HHHHHHHhhcCCcchHHHHHHHHHHHHhccC-chhHHHHhhhc
Q 000133 528 VPALLWLLKNGSANGKEIAAKTLNHLIHKSD--TAT-ISQLTALLTSDLPESKVYVLDALKSMLSVVS-FSDILREGSAA 603 (2100)
Q Consensus 528 i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~--~~~-i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~-~~~~~~~~i~~ 603 (2100)
+|.|+..+.++..-+++.|..+|..++.+.. +.. .+.+...+.+.++.+|..+...+..+....+ ....+.....-
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~ 175 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFL 175 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchH
Confidence 7999999999888999999999999998766 444 4556667888889999999999888766554 11111111111
Q ss_pred cchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChh
Q 000133 604 NDAVETMIKILSSTKEETQAKSASALAGIFETRKD 638 (2100)
Q Consensus 604 ~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~ 638 (2100)
...++.+..++.++++++|+.|-.++..+....++
T Consensus 176 ~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 176 KQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 23478888899999999999999999999765443
No 226
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.25 E-value=0.014 Score=57.41 Aligned_cols=66 Identities=20% Similarity=0.308 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhcc--CCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 000133 459 QECSVALLCLLSNENDDSKWAITAAGGIPPLVQILE--SGSAKAKEDSASILRNLCNHSEDIRACVES 524 (2100)
Q Consensus 459 ~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~vre~A~~aL~~L~~~~~~~~~~i~~ 524 (2100)
+...+.+|+||+..++..+..+.+.||+|.+++... +.+|-+||+|.+++.||+..+++++..|.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 456788999999999999999999999999999864 458999999999999999999999988765
No 227
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.17 E-value=0.62 Score=56.42 Aligned_cols=249 Identities=20% Similarity=0.182 Sum_probs=168.9
Q ss_pred HHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCc-----c----cHHHHHhcCChHHHHHhcc
Q 000133 424 LLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNEND-----D----SKWAITAAGGIPPLVQILE 494 (2100)
Q Consensus 424 L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~-----~----~~~~i~~~g~i~~Lv~lL~ 494 (2100)
+..++.- |+....+++.++++.|+.+|.+.+.++....+..|..|+..+. + ...++++.+.++.|++-++
T Consensus 108 mhvlAt~-PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnve 186 (536)
T KOG2734|consen 108 MHVLATM-PDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVE 186 (536)
T ss_pred HHhhhcC-hHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHH
Confidence 3344443 6666778899999999999999999999999999999974221 1 2567788899999999886
Q ss_pred CCCHHHHH------HHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcC--ChhHHHHHHHHHHHHhcCCCC-------
Q 000133 495 SGSAKAKE------DSASILRNLCNHSEDIRACVESADAVPALLWLLKNG--SANGKEIAAKTLNHLIHKSDT------- 559 (2100)
Q Consensus 495 ~~~~~vre------~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~Aa~aL~~L~~~~~~------- 559 (2100)
.-++.+++ .+...+.|+....++....+++.|.+..|+.-+... -..-+..|..+|.-+..+++.
T Consensus 187 RLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~ 266 (536)
T KOG2734|consen 187 RLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGP 266 (536)
T ss_pred HhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcC
Confidence 55444444 567778888887788888888888888877754432 234577788888777665542
Q ss_pred -CcHHHHHHH---hhcCC------cchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHH
Q 000133 560 -ATISQLTAL---LTSDL------PESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASAL 629 (2100)
Q Consensus 560 -~~i~~L~~l---L~~~~------~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL 629 (2100)
.++..++.- -+..+ .+.-++...||+.+..... -+..+....|+....-+++. ....+..+..+|
T Consensus 267 l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~----nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvL 341 (536)
T KOG2734|consen 267 LDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPA----NRERFLKGEGLQLMNLMLRE-KKVSRGSALKVL 341 (536)
T ss_pred cccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChh----hhhhhhccccHHHHHHHHHH-HHHhhhhHHHHH
Confidence 233333221 11222 2344556677775544333 24456677888877777766 556777888999
Q ss_pred HHHhcCCh--hhHHHHHhcCchHHHHHhhc-CCCH---------HHHHHHHHHHHHHhcCC
Q 000133 630 AGIFETRK--DLRESSIAVKTLWSVMKLLD-VGSE---------CILVEASRCLAAIFLSV 678 (2100)
Q Consensus 630 ~~L~~~~~--~~~~~~~~~g~v~~Lv~lL~-~~~~---------~v~~~aa~aL~~L~~~~ 678 (2100)
-....+++ +++..+++.+++..+..++. .+++ ++-...+..|.++....
T Consensus 342 d~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~ 402 (536)
T KOG2734|consen 342 DHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNL 402 (536)
T ss_pred HHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhc
Confidence 98888766 68888998888888777763 2221 24455666666665543
No 228
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.10 E-value=1.4 Score=53.81 Aligned_cols=189 Identities=19% Similarity=0.112 Sum_probs=99.2
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCC-HHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHH
Q 000133 616 STKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGS-ECILVEASRCLAAIFLSVRENREVAAVARDALSP 694 (2100)
Q Consensus 616 s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~-~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~ 694 (2100)
+..+..+..+|.++.++....-..... .+.-..+.......++. .-++.+|.++++-+.-|..-.....++ ..+...
T Consensus 360 s~~~Tl~~s~Cdals~i~~~~f~~lpn-~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv-~~aa~~ 437 (728)
T KOG4535|consen 360 SEHPTLQASACDALSSILPEAFSNLPN-DRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFV-ADAANA 437 (728)
T ss_pred hcCCCchhHHHHHHhhcCchhhcCCCC-cchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHH-HHHHHH
Confidence 345667778899998887532111000 00012333333333222 235566667776666665444444333 345666
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHh----cC-cH---HHHHHHHcCcHHHHHH---HHccCChhHHHHHHHHHHHHHhcCc
Q 000133 695 LVVLAGSPVLEVAEQATCALANLI----LD-SE---VSEKAIAEEIILPATR---VLCEGTISGKTLAAAAIARLLHSRK 763 (2100)
Q Consensus 695 Lv~ll~~~~~evr~~aa~aL~~L~----~~-~~---~~~~~v~~~~v~~L~~---ll~~~~~~~~~~Aa~aL~~l~~~~~ 763 (2100)
....+.+..-..|+.++|+++||. .+ +. ....+. ...+..+.+ ....+..+++.+|.++|.+++.-..
T Consensus 438 il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~s-g~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq 516 (728)
T KOG4535|consen 438 ILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFS-GLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQ 516 (728)
T ss_pred HHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHH-HHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHH
Confidence 667777777789999999999995 22 22 222222 222333322 2333445589999999999885333
Q ss_pred cchhHhhhhhccCcHHHHHHhhhhcccccchHhHHHHHHHHHHc
Q 000133 764 IDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRS 807 (2100)
Q Consensus 764 ~~~~~~~~~~~~g~l~~li~~l~s~~~~v~~~~al~~L~~L~~~ 807 (2100)
.-.+..-....++.+..++...-......++-++..++-||.++
T Consensus 517 ~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn 560 (728)
T KOG4535|consen 517 PIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKN 560 (728)
T ss_pred HhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcC
Confidence 11110000122333333333333333333448888888888443
No 229
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=96.06 E-value=0.31 Score=62.71 Aligned_cols=252 Identities=17% Similarity=0.140 Sum_probs=157.5
Q ss_pred HHHHHHhCCCccchhhhccccHHHHHHhh----------cCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHh
Q 000133 381 EALASLYGNPLLSIKLENSEAKRLLVGLI----------TMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISL 450 (2100)
Q Consensus 381 ~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL----------~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~l 450 (2100)
++|.-+.+.+.....+....++..|..+- ...+..+...|.+||.|+...++..++.+.+.|+.+.++..
T Consensus 3 ~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~ 82 (446)
T PF10165_consen 3 ETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCER 82 (446)
T ss_pred HHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHH
Confidence 34444556666666666666666666554 34578999999999999999999999999999999999999
Q ss_pred hCCC-----CHHHHHHHHHHHHHhccCCcccHHHHHhc-CChHHHHHhccCC-----------------CHHHHHHHHHH
Q 000133 451 LGLS-----SEQQQECSVALLCLLSNENDDSKWAITAA-GGIPPLVQILESG-----------------SAKAKEDSASI 507 (2100)
Q Consensus 451 L~s~-----~~~v~~~A~~aL~nLs~~~~~~~~~i~~~-g~i~~Lv~lL~~~-----------------~~~vre~A~~a 507 (2100)
|+.. +.++.......|.-++....+.+..+++. +++..++..+... +...-..+...
T Consensus 83 Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKl 162 (446)
T PF10165_consen 83 LKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKL 162 (446)
T ss_pred HHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHH
Confidence 9876 78888889999888887666666555544 7887777755311 22334467888
Q ss_pred HHHHhcCChhhHHHHHhCCcHHHHHHHhhcC---------ChhHHHHHHHHHHHHhcC-------------------CCC
Q 000133 508 LRNLCNHSEDIRACVESADAVPALLWLLKNG---------SANGKEIAAKTLNHLIHK-------------------SDT 559 (2100)
Q Consensus 508 L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~---------~~~~~~~Aa~aL~~L~~~-------------------~~~ 559 (2100)
+.|++.+.+.... -...+.++.|+.++..- .......+..+|.|+-.. .+.
T Consensus 163 lFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~ 241 (446)
T PF10165_consen 163 LFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNM 241 (446)
T ss_pred HHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCCh
Confidence 8899876544332 01244556666655421 223566777777776210 011
Q ss_pred CcHHHHHHHhhc----CC-c---chHHHHHHHHHHHHhccCchhHHHHh---------------hhccchH-HHHHHHhc
Q 000133 560 ATISQLTALLTS----DL-P---ESKVYVLDALKSMLSVVSFSDILREG---------------SAANDAV-ETMIKILS 615 (2100)
Q Consensus 560 ~~i~~L~~lL~~----~~-~---~~~~~a~~aL~~l~~~~~~~~~~~~~---------------i~~~~~i-~~Lv~lL~ 615 (2100)
..+..|+.+|.. .. . +.-.-....|..++... +..|.. ....+.+ ..|++++.
T Consensus 242 ~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~---~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt 318 (446)
T PF10165_consen 242 DVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA---REVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMT 318 (446)
T ss_pred HHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc---HHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhC
Confidence 344555555432 11 0 11111222222222211 111111 1123334 47899999
Q ss_pred CCCHHHHHHHHHHHHHHhcCC
Q 000133 616 STKEETQAKSASALAGIFETR 636 (2100)
Q Consensus 616 s~~~~~~~~Aa~aL~~L~~~~ 636 (2100)
+..+.++..++..|..||..+
T Consensus 319 ~~~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 319 SPDPQLKDAVAELLFVLCKED 339 (446)
T ss_pred CCCchHHHHHHHHHHHHHhhh
Confidence 988999999999999999653
No 230
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.06 E-value=2.6 Score=54.22 Aligned_cols=347 Identities=15% Similarity=0.156 Sum_probs=191.3
Q ss_pred HHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhc-CCCHHHHHHHHHHHHHhhccCccch-----HHHHhCCcHHHHH
Q 000133 375 VQERTIEALASLYGNPLLSIKLENSEAKRLLVGLIT-MATNEVQEELVRALLKLCNNEGSLW-----RALQGREGIQLLI 448 (2100)
Q Consensus 375 vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~~L~~~~~~~~-----~~i~~~g~i~~Lv 448 (2100)
-.++...+|+.++.++..-+.+.. ..+..+-...+ ..+.+.....+.+|.++...+.... ....+...++.+.
T Consensus 18 ~~~~~L~~l~~ls~~~~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~ 96 (415)
T PF12460_consen 18 NYERILEALAALSTSPQILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLF 96 (415)
T ss_pred HHHHHHHHHHHHHCChhHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHH
Confidence 467778888888776665433322 12222222222 1255666777778877765543322 1222333677777
Q ss_pred HhhCCC-------CHHHHHHHHHHHHHhccCCc-ccHHHHHhcCChHHHHHhcc----------CCC--HHHHHHHHHHH
Q 000133 449 SLLGLS-------SEQQQECSVALLCLLSNEND-DSKWAITAAGGIPPLVQILE----------SGS--AKAKEDSASIL 508 (2100)
Q Consensus 449 ~lL~s~-------~~~v~~~A~~aL~nLs~~~~-~~~~~i~~~g~i~~Lv~lL~----------~~~--~~vre~A~~aL 508 (2100)
++.-.. ++.+...+...+..+....+ +.++.+ +..+..++- ..+ .+.+......+
T Consensus 97 ~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~-----~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~ 171 (415)
T PF12460_consen 97 ELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEI-----LDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILF 171 (415)
T ss_pred HHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHH-----HHHHHHHHccccccCCCCccccccccccccHHHHH
Confidence 765321 23444445555555544333 233333 223333332 111 11222222222
Q ss_pred HHH-hcCChhhHHHHHhCCcHHHHHHHhhc-CChhHHHHHHHHHHHHhcCCCC-CcHHHHHHH----h-hcCCcchHHHH
Q 000133 509 RNL-CNHSEDIRACVESADAVPALLWLLKN-GSANGKEIAAKTLNHLIHKSDT-ATISQLTAL----L-TSDLPESKVYV 580 (2100)
Q Consensus 509 ~~L-~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~Aa~aL~~L~~~~~~-~~i~~L~~l----L-~~~~~~~~~~a 580 (2100)
..+ +.-.++..-. .....+..++.+..+ .++..+..++..++.+...-.. ..+..++.. + .......+..+
T Consensus 172 ~~il~~l~~~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 250 (415)
T PF12460_consen 172 SAILCSLRKDVSLP-DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQA 250 (415)
T ss_pred HHHHHcCCcccCcc-CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHH
Confidence 222 2222222110 011256677777655 4577888899999988876322 223333332 2 23334455555
Q ss_pred HHHHHHHHh---ccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhh-------------HHHHH
Q 000133 581 LDALKSMLS---VVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDL-------------RESSI 644 (2100)
Q Consensus 581 ~~aL~~l~~---~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~-------------~~~~~ 644 (2100)
.+.+.-++. ..+++. ....+..|++++.+ +++...++.++.-+..+.++. ++.+.
T Consensus 251 ~~~~~Wi~KaLv~R~~~~-------~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F 321 (415)
T PF12460_consen 251 LEILIWITKALVMRGHPL-------ATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF 321 (415)
T ss_pred HHHHHHHHHHHHHcCCch-------HHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH
Confidence 555544332 111111 11236667777766 788899999999998874432 22222
Q ss_pred hcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHH
Q 000133 645 AVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVS 724 (2100)
Q Consensus 645 ~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~ 724 (2100)
...+|.|++..+..+...+.....+|..+..+.+..--. ---...+|.|++-+..++++++..+..+|..++.+.+..
T Consensus 322 -~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~-~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~ 399 (415)
T PF12460_consen 322 -TQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLL-PELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPEL 399 (415)
T ss_pred -HHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHH
Confidence 247999999998887778888899999998877642211 111457888889999999999999999999999765443
Q ss_pred HHHHHcCcHHHHHHH
Q 000133 725 EKAIAEEIILPATRV 739 (2100)
Q Consensus 725 ~~~v~~~~v~~L~~l 739 (2100)
..-.-..+|+.|+++
T Consensus 400 i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 400 ISEHLSSLIPRLLKL 414 (415)
T ss_pred HHHHHHHHHHHHHhc
Confidence 333334666666553
No 231
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=95.81 E-value=0.017 Score=60.33 Aligned_cols=89 Identities=16% Similarity=0.295 Sum_probs=67.2
Q ss_pred ceeeeeccchhh--hh--hCC--Ccce-EEEecCC-CCCccccccccCCC--ccccccceeccccCCCC-----------
Q 000133 1981 LVVIIKRGNNMK--QS--VGN--PSVY-CKLTLGN-TPPRQTKIVSTGPN--PEWEESFAWSFEIPPKG----------- 2039 (2100)
Q Consensus 1981 ~~~~~~r~~~~~--~~--~~~--~~~~-~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----------- 2039 (2100)
|.|+|++..++. .. .|. +-.| ...-.|+ ....+|.|--++.| |.||+.|.|.|+.||..
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 689999998832 22 442 3334 4444454 56677999999999 99999999999998865
Q ss_pred -----------CeEEEEeecCCccCC-cccceEEEEEeeEEe
Q 000133 2040 -----------QKLHISCKNKSKMGK-SSFGKVTIQIDRVVM 2069 (2100)
Q Consensus 2040 -----------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 2069 (2100)
.+|+|.++++..|++ +.+|.+++++...-.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~ 123 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPR 123 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccc
Confidence 488999999999964 556999999886544
No 232
>PLN02223 phosphoinositide phospholipase C
Probab=95.70 E-value=0.024 Score=71.77 Aligned_cols=115 Identities=21% Similarity=0.426 Sum_probs=77.7
Q ss_pred CCCceeeeeccchh----hhhhC---CCcceEEEec-C---CCCCccccccccCCCccccccceeccccCCCCCeEEEEe
Q 000133 1978 PGTLVVIIKRGNNM----KQSVG---NPSVYCKLTL-G---NTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISC 2046 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~----~~~~~---~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2046 (2100)
+..|+|+|+-+..+ .+..| ...-+..+.+ | |...++|+|.+++-||.|+|+|+|.+..| .=-.|.++|
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~P-ELAlLrf~V 486 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYP-DLALISFEV 486 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEcc-CceEEEEEE
Confidence 45699999988653 22222 2223444443 3 44445788999999999999999999754 445789999
Q ss_pred ecCCccCCccc-ceEEEEEeeEEeecccccceeecCCCCCC---CCcceEEEEEec
Q 000133 2047 KNKSKMGKSSF-GKVTIQIDRVVMLGAVAGEYTLLPESKSG---PSRNLEIEFLWS 2098 (2100)
Q Consensus 2047 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 2098 (2100)
++++.++++.| |..+|+++-+.. |--++.--+++| ++-+|=+.|+|+
T Consensus 487 ~D~D~~~~ddfiGQ~~LPv~~Lr~-----GyR~VpL~~~~g~~l~~~~Ll~~f~~~ 537 (537)
T PLN02223 487 YDYEVSTADAFCGQTCLPVSELIE-----GIRAVPLYDERGKACSSTMLLTRFKWS 537 (537)
T ss_pred EecCCCCCCcEEEEEecchHHhcC-----CceeEeccCCCcCCCCCceEEEEEEeC
Confidence 99999887766 999999886542 222221113333 345688889886
No 233
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=95.69 E-value=0.018 Score=46.83 Aligned_cols=39 Identities=38% Similarity=0.626 Sum_probs=35.9
Q ss_pred cccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHh
Q 000133 474 DDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLC 512 (2100)
Q Consensus 474 ~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~ 512 (2100)
++++..+.+.|+++.|++++.++++++++.++|+|.||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 347788999999999999999989999999999999997
No 234
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=95.66 E-value=0.027 Score=55.35 Aligned_cols=68 Identities=19% Similarity=0.254 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhh--CCCCHHHHHHHHHHHHHhccCCcccHHHHHhcC
Q 000133 417 QEELVRALLKLCNNEGSLWRALQGREGIQLLISLL--GLSSEQQQECSVALLCLLSNENDDSKWAITAAG 484 (2100)
Q Consensus 417 ~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL--~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g 484 (2100)
+...++.|+|+|..+...+..+++.||||.++... +..+|-+++.|.+++.||+.++++++..|.+-.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L~ 72 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQLE 72 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhcc
Confidence 55678899999999999999999999999999965 467899999999999999999999888776543
No 235
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=95.53 E-value=0.39 Score=64.69 Aligned_cols=313 Identities=15% Similarity=0.090 Sum_probs=185.8
Q ss_pred hHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCcc---ch
Q 000133 359 VEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGS---LW 435 (2100)
Q Consensus 359 i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~---~~ 435 (2100)
+++++...++.-....-+..|.+-|..|+..-+.-..+.. .+|.++.++.++..+||..|+.+|..+-..-.+ .-
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LDR--VlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~d 500 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLDR--VLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSD 500 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHhh--hHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCccc
Confidence 4555555544333323477788888877554443334433 588899999999999999999998876543211 11
Q ss_pred HHHHhCCcHHHHHHhhCC-CCHHHHHHHHHHHHHhccC---CcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHH
Q 000133 436 RALQGREGIQLLISLLGL-SSEQQQECSVALLCLLSNE---NDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNL 511 (2100)
Q Consensus 436 ~~i~~~g~i~~Lv~lL~s-~~~~v~~~A~~aL~nLs~~---~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L 511 (2100)
..|.-.=..|.|-.++.+ ....++..-+..|..|+.. .-+..+.+..+| ++++.+.+.. .+
T Consensus 501 aniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g-------~~n~~nset~-------~~- 565 (1431)
T KOG1240|consen 501 ANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAG-------MLNDPNSETA-------PE- 565 (1431)
T ss_pred chhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcc-------cccCcccccc-------cc-
Confidence 112222345788888877 4555666666777777631 011111111111 1222222100 00
Q ss_pred hcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhc-----CCCCCcHHHHHHHhhcCCcchHHHHHHHHHH
Q 000133 512 CNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIH-----KSDTATISQLTALLTSDLPESKVYVLDALKS 586 (2100)
Q Consensus 512 ~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~-----~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~ 586 (2100)
... +.....+ ..++-...+.++.++.+-+|+.-...+.-||. .+++-.++.|+..|++.++..|..-.+.+..
T Consensus 566 ~~~-~~~~~~L-~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~g 643 (1431)
T KOG1240|consen 566 QNY-NTELQAL-HHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVG 643 (1431)
T ss_pred ccc-chHHHHH-HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccc
Confidence 000 1111111 12233455566666677777776777777774 3455678899999999999998887777766
Q ss_pred HHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHH
Q 000133 587 MLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVE 666 (2100)
Q Consensus 587 l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~ 666 (2100)
++...... ..+...+|.|.+.|.++.+.+-..|..+|.-|+.. ...++..-..++.-..-+|..++.=+++.
T Consensus 644 vsi~VG~r------s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~--~ll~K~~v~~i~~~v~PlL~hPN~WIR~~ 715 (1431)
T KOG1240|consen 644 VSIFVGWR------SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKL--GLLRKPAVKDILQDVLPLLCHPNLWIRRA 715 (1431)
T ss_pred eEEEEeee------eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHh--cccchHHHHHHHHhhhhheeCchHHHHHH
Confidence 55432211 01233488888999999999999999999999975 33333333345555566678888889999
Q ss_pred HHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCC
Q 000133 667 ASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSP 702 (2100)
Q Consensus 667 aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~ 702 (2100)
++..|..+....... =+.+...|.+-..+..+
T Consensus 716 ~~~iI~~~~~~ls~a----dvyc~l~P~irpfl~~~ 747 (1431)
T KOG1240|consen 716 VLGIIAAIARQLSAA----DVYCKLMPLIRPFLERP 747 (1431)
T ss_pred HHHHHHHHHhhhhhh----hheEEeehhhHHhhhcc
Confidence 999998886543211 12244555555555543
No 236
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.49 E-value=6 Score=50.89 Aligned_cols=345 Identities=14% Similarity=0.100 Sum_probs=187.0
Q ss_pred HHHHHhhcCCCH---HHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCC-CHHHHHHHHHHHHHhccCCcccH-
Q 000133 403 RLLVGLITMATN---EVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLS-SEQQQECSVALLCLLSNENDDSK- 477 (2100)
Q Consensus 403 ~~Lv~lL~~~~~---~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~-~~~v~~~A~~aL~nLs~~~~~~~- 477 (2100)
|.++..|.+.+. ...+....+|..+|....- .+.+.- ..+..|-...+.. +.+.....+.+|.++.....+..
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i-~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~ 79 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTSPQI-LETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQ 79 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCChhH-HHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccc
Confidence 455666665433 5677889999999988432 222221 2333333333322 44455556666666643322222
Q ss_pred ----HHHHhcCChHHHHHhccCC-----C--HHHHHHHHHHHHHHhcCCh-hhHHHHHhCCcHHHHHHHhh---------
Q 000133 478 ----WAITAAGGIPPLVQILESG-----S--AKAKEDSASILRNLCNHSE-DIRACVESADAVPALLWLLK--------- 536 (2100)
Q Consensus 478 ----~~i~~~g~i~~Lv~lL~~~-----~--~~vre~A~~aL~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~--------- 536 (2100)
....+...+|.+.++.-.. + +.+-+.+...+..+....+ +.+..+ +..+..++-
T Consensus 80 ~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~-----~~~~~~lf~~~~~~~~~~ 154 (415)
T PF12460_consen 80 FEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEI-----LDELYSLFLSPKSFSPFQ 154 (415)
T ss_pred cchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHH-----HHHHHHHHccccccCCCC
Confidence 2233444777777765322 2 4555555555555554433 333332 333444333
Q ss_pred -cCC------hhHHHHHHHHHHHHhcCCC----CCcHHHHHHHhh-cCCcchHHHHHHHHHHHHhccCchhHHHHhhhcc
Q 000133 537 -NGS------ANGKEIAAKTLNHLIHKSD----TATISQLTALLT-SDLPESKVYVLDALKSMLSVVSFSDILREGSAAN 604 (2100)
Q Consensus 537 -~~~------~~~~~~Aa~aL~~L~~~~~----~~~i~~L~~lL~-~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~ 604 (2100)
..+ .+..--...++..+-.... ...+..++.+.. ..++..+..+.++++.+..--...+....
T Consensus 155 ~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~----- 229 (415)
T PF12460_consen 155 PSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDE----- 229 (415)
T ss_pred ccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHH-----
Confidence 111 1111122233333322111 123445555533 34466777777877766554222221111
Q ss_pred chHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchh--
Q 000133 605 DAVETMIKIL-SSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVREN-- 681 (2100)
Q Consensus 605 ~~i~~Lv~lL-~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~-- 681 (2100)
.+..+..-. ....+..+..+...+..+.+. --.|........+..|+.++.+ +++...++.+++-+....++.
T Consensus 230 -~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~Ka-Lv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~ 305 (415)
T PF12460_consen 230 -FLDSLLQSISSSEDSELRPQALEILIWITKA-LVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLN 305 (415)
T ss_pred -HHHHHHhhhcccCCcchhHHHHHHHHHHHHH-HHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcC
Confidence 133333333 233444555555555444432 0011111222357778888877 567889999999887763321
Q ss_pred -----HHHHHHh----CCChHHHHHHhCCCCHHHHHHHHHHHHHHhcC-cHHHHHHHHcCcHHHHHHHHccCChhHHHHH
Q 000133 682 -----REVAAVA----RDALSPLVVLAGSPVLEVAEQATCALANLILD-SEVSEKAIAEEIILPATRVLCEGTISGKTLA 751 (2100)
Q Consensus 682 -----~~~~~~~----~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~-~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~A 751 (2100)
+-..+.. ...+|.|++..+..+.+.|..-..||.+++.+ |......--+.++|.|++.+..++..++..+
T Consensus 306 ~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~ 385 (415)
T PF12460_consen 306 KENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSS 385 (415)
T ss_pred ccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 0000111 23577777777888888999999999999966 4433333357899999999999999999999
Q ss_pred HHHHHHHHhcCc
Q 000133 752 AAAIARLLHSRK 763 (2100)
Q Consensus 752 a~aL~~l~~~~~ 763 (2100)
...|..++...+
T Consensus 386 L~tL~~~l~~~~ 397 (415)
T PF12460_consen 386 LETLKMILEEAP 397 (415)
T ss_pred HHHHHHHHHcCH
Confidence 999999887653
No 237
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.47 E-value=0.02 Score=50.17 Aligned_cols=55 Identities=16% Similarity=0.181 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHH
Q 000133 456 EQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNL 511 (2100)
Q Consensus 456 ~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L 511 (2100)
+.+|..|+++|++++...++ .........++.|+.+|.++++.+|..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~-~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPE-LLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHH-HHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHH-HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 46899999999999854443 34446667899999999999999999999999875
No 238
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=95.31 E-value=0.036 Score=45.05 Aligned_cols=40 Identities=30% Similarity=0.343 Sum_probs=36.1
Q ss_pred hhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhc
Q 000133 516 EDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIH 555 (2100)
Q Consensus 516 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~ 555 (2100)
++.+..+.+.|++++|+++++++++++++.++++|+||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3577888899999999999999999999999999999963
No 239
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=95.26 E-value=0.0056 Score=72.05 Aligned_cols=100 Identities=28% Similarity=0.440 Sum_probs=70.3
Q ss_pred Cceeeeeccchhhhh--hCCCcceEEEecC----CCCCccccccccCCCccccccceeccccCCCCCeEEEEeec-CCcc
Q 000133 1980 TLVVIIKRGNNMKQS--VGNPSVYCKLTLG----NTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKN-KSKM 2052 (2100)
Q Consensus 1980 ~~~~~~~r~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 2052 (2100)
.|+|+|.-..|+--- -|-+.-+.++++= |.....||-++.+.||+|||+|+|.+.--.+.-.|.|++|+ .-|.
T Consensus 181 ~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrTs 260 (683)
T KOG0696|consen 181 VLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRTS 260 (683)
T ss_pred eEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccccc
Confidence 478888777666422 2223333344332 33334599999999999999999999955566699999999 6677
Q ss_pred CCcccceEEEEEeeEEeecccccceeec
Q 000133 2053 GKSSFGKVTIQIDRVVMLGAVAGEYTLL 2080 (2100)
Q Consensus 2053 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2080 (2100)
+++-+|-...-|..+..++ .+|-|+|+
T Consensus 261 RNDFMGslSFgisEl~K~p-~~GWyKlL 287 (683)
T KOG0696|consen 261 RNDFMGSLSFGISELQKAP-VDGWYKLL 287 (683)
T ss_pred cccccceecccHHHHhhcc-hhhHHHHh
Confidence 7888888888887765443 46666664
No 240
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.23 E-value=0.021 Score=72.37 Aligned_cols=87 Identities=23% Similarity=0.447 Sum_probs=62.6
Q ss_pred CCCceeeeeccchhhh-hhCCCc-ceEEEecCCCC----CccccccccCCCccccccceeccccCCCCC-eEEEEeecCC
Q 000133 1978 PGTLVVIIKRGNNMKQ-SVGNPS-VYCKLTLGNTP----PRQTKIVSTGPNPEWEESFAWSFEIPPKGQ-KLHISCKNKS 2050 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~-~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 2050 (2100)
-|-|+|.|+...|++. ..|..+ -|.+.++=.+. .++|.+.++..||.|+|.|.|.+...-..+ .+.|.+++++
T Consensus 297 ~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d 376 (421)
T KOG1028|consen 297 AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHD 376 (421)
T ss_pred CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcc
Confidence 4789999999999984 444433 44443333333 345669999999999999999554223333 7899999999
Q ss_pred ccCCcc-cceEEEEE
Q 000133 2051 KMGKSS-FGKVTIQI 2064 (2100)
Q Consensus 2051 ~~~~~~-~~~~~~~~ 2064 (2100)
++|+.. +|++.+-.
T Consensus 377 ~~~~~~~iG~~~lG~ 391 (421)
T KOG1028|consen 377 TLGSNDLIGRCILGS 391 (421)
T ss_pred cccccceeeEEEecC
Confidence 999886 58776543
No 241
>PLN02222 phosphoinositide phospholipase C 2
Probab=95.08 E-value=0.045 Score=70.71 Aligned_cols=116 Identities=20% Similarity=0.344 Sum_probs=75.7
Q ss_pred CCceeeeeccchh--------hhhhCCCcceEEEec-C---CCCCccccccccCCCccccccceeccccCCCCCeEEEEe
Q 000133 1979 GTLVVIIKRGNNM--------KQSVGNPSVYCKLTL-G---NTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISC 2046 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~--------~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2046 (2100)
..|+|+|+-+..+ ..+|....-+..+.+ | |...++||+|.+|-||.|+|.|+|.+.. |.=-.|.+.|
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~-PeLAllRf~V 530 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTV-PELALLRLEV 530 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEc-CceeEEEEEE
Confidence 4688999877542 222333333443333 3 5667899999999999999999999885 4446899999
Q ss_pred ecCCccCCcc-cceEEEEEeeEEeecccccceeecCC-CCCCCCcceEEEEEec
Q 000133 2047 KNKSKMGKSS-FGKVTIQIDRVVMLGAVAGEYTLLPE-SKSGPSRNLEIEFLWS 2098 (2100)
Q Consensus 2047 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 2098 (2100)
++++.++++. +|..+|+++.... | |. .-.|... +..=+.-+|=++|+|.
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~-G-yR-~V~L~~~~g~~l~~a~Lfv~~~~~ 581 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQ-G-IR-AFPLHSRKGEKYKSVKLLVKVEFV 581 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhC-c-cc-eEEccCCCcCCCCCeeEEEEEEeC
Confidence 9998877655 4999999987543 2 11 1123222 2221234677888873
No 242
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.08 E-value=2.4 Score=54.71 Aligned_cols=317 Identities=16% Similarity=0.118 Sum_probs=183.8
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHh-hCCCCHHHHHHHHHHHHHhccCCcccHHH
Q 000133 401 AKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISL-LGLSSEQQQECSVALLCLLSNENDDSKWA 479 (2100)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~l-L~s~~~~v~~~A~~aL~nLs~~~~~~~~~ 479 (2100)
.+|.+...|.+.+.-||++|.-|+..+....... +. ++=..+-++ ....++...++|-..|...- ++.
T Consensus 135 l~p~IracleHrhsYVRrNAilaifsIyk~~~~L---~p--DapeLi~~fL~~e~DpsCkRNAFi~L~~~D---~Er--- 203 (948)
T KOG1058|consen 135 LMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHL---IP--DAPELIESFLLTEQDPSCKRNAFLMLFTTD---PER--- 203 (948)
T ss_pred hHHHHHHHHhCcchhhhhhhheeehhHHhhhhhh---cC--ChHHHHHHHHHhccCchhHHHHHHHHHhcC---HHH---
Confidence 3566677888999999999999999988763221 11 222223333 45668888888877666543 332
Q ss_pred HHhcCChHHHHHhcc---CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcC
Q 000133 480 ITAAGGIPPLVQILE---SGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHK 556 (2100)
Q Consensus 480 i~~~g~i~~Lv~lL~---~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~ 556 (2100)
++.-|..... +-++..+.-.+..+...|..++.-+.. -++.+..+|.+.++.++-.|+.+|..|+..
T Consensus 204 -----Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~-----~i~~i~~lL~stssaV~fEaa~tlv~lS~~ 273 (948)
T KOG1058|consen 204 -----ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKAR-----YIRCIYNLLSSTSSAVIFEAAGTLVTLSND 273 (948)
T ss_pred -----HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhH-----HHHHHHHHHhcCCchhhhhhcceEEEccCC
Confidence 2333332222 224666777777788877755555433 467888999988889999999988888654
Q ss_pred CCC--CcHHHHHHHhhc-CCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 000133 557 SDT--ATISQLTALLTS-DLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIF 633 (2100)
Q Consensus 557 ~~~--~~i~~L~~lL~~-~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~ 633 (2100)
... .+...++.++.+ .+..++.-...=|..+. ..+..+.+. -+--++.+|.+++-+++..+......|.
T Consensus 274 p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~--~~~~~il~~------l~mDvLrvLss~dldvr~Ktldi~ldLv 345 (948)
T KOG1058|consen 274 PTALKAAASTYIDLLVKESDNNVKLIVLDRLSELK--ALHEKILQG------LIMDVLRVLSSPDLDVRSKTLDIALDLV 345 (948)
T ss_pred HHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHh--hhhHHHHHH------HHHHHHHHcCcccccHHHHHHHHHHhhh
Confidence 321 233445555443 33344444333333332 122222222 2445667888999999999999888888
Q ss_pred cCChhhHHHHHhcCchHHHHHhh-------cCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHH
Q 000133 634 ETRKDLRESSIAVKTLWSVMKLL-------DVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEV 706 (2100)
Q Consensus 634 ~~~~~~~~~~~~~g~v~~Lv~lL-------~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~ev 706 (2100)
.... .+. ++..|-+-+ .+.+...+..-..++...+...++ .....++.|+..+.+.++..
T Consensus 346 ssrN--ved-----iv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~------~aatvV~~ll~fisD~N~~a 412 (948)
T KOG1058|consen 346 SSRN--VED-----IVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE------VAATVVSLLLDFISDSNEAA 412 (948)
T ss_pred hhcc--HHH-----HHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH------HHHHHHHHHHHHhccCCHHH
Confidence 7532 221 122222222 112233455556666665554443 23457899999999988865
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHcc-CChhHHHHHHHHHHHHHhcCc
Q 000133 707 AEQATCALANLILDSEVSEKAIAEEIILPATRVLCE-GTISGKTLAAAAIARLLHSRK 763 (2100)
Q Consensus 707 r~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~-~~~~~~~~Aa~aL~~l~~~~~ 763 (2100)
......-+...+..-+.- ...+++.|...+.. ...++-++|+|.+..-.....
T Consensus 413 as~vl~FvrE~iek~p~L----r~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 413 ASDVLMFVREAIEKFPNL----RASIIEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HHHHHHHHHHHHHhCchH----HHHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 333333333333222211 23455555554443 344577889999887765444
No 243
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.96 E-value=3.8 Score=53.04 Aligned_cols=393 Identities=14% Similarity=0.118 Sum_probs=190.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhcchhhhhhhhhcCChHHHH----HhhccCChhhHHHHHHHHHHhhcCCc----h
Q 000133 1234 SQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLV----EILNTGLEREQHAAIAALVRLLSENP----S 1305 (2100)
Q Consensus 1234 ~~Li~~L~~~~~~~r~~Aa~aL~~L~~~~~~~~~i~~~~~i~~Lv----~lL~~~~~~~~~~A~~aL~~La~~~~----~ 1305 (2100)
..+..-|+.+++.+|..|.+-+..+ +.+..-+|.|+ ...-+......+--+..-..+..-.. .
T Consensus 23 ~~ik~~Lek~~~~~KIeamK~ii~~---------mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl 93 (948)
T KOG1058|consen 23 DEIKEKLEKGDDEVKIEAMKKIIAL---------MLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKL 93 (948)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHH---------HHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCccc
Confidence 4566778899999998886543332 33333444433 33223322333333444445543211 1
Q ss_pred hhHHHHhhhcchhHHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHhhcChHHHHHHHhcCCchHHHHHHHHHHHh
Q 000133 1306 RALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKL 1385 (2100)
Q Consensus 1306 ~~~~~~~v~~gal~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~~~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L 1385 (2100)
...++. +-+++-+=|.+ |++-+|...+..|+.|= .++ --...+|.+...|.+...-+|..|+-++..+
T Consensus 94 ~~EMIL-----vcna~RkDLQH-PNEyiRG~TLRFLckLk-E~E-----Llepl~p~IracleHrhsYVRrNAilaifsI 161 (948)
T KOG1058|consen 94 LHEMIL-----VCNAYRKDLQH-PNEYIRGSTLRFLCKLK-EPE-----LLEPLMPSIRACLEHRHSYVRRNAILAIFSI 161 (948)
T ss_pred HHHHHH-----HHHHHhhhccC-chHhhcchhhhhhhhcC-cHH-----HhhhhHHHHHHHHhCcchhhhhhhheeehhH
Confidence 121111 22333333444 57778888877777652 222 2234677778888899999999999888887
Q ss_pred cccHHHHHHHHhcCCHHHHHHhh-cCCChhHHHHHHHHHHHhhcCCchhhHHHHhcCcHHHHHHHhccCChhHHHHHHHH
Q 000133 1386 VDDEQLAELVAAHGAVIPLVGLL-YGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAEL 1464 (2100)
Q Consensus 1386 ~~~~~~~~~~~~~g~i~~L~~lL-~~~~~~vr~~A~~aL~~La~~~~~~k~~i~~~~~i~~lv~~L~~~~~~~~~~aa~l 1464 (2100)
.....+ + -.++=+.+-..| ...|+..+|+|...|......+ ... .+...+..+.+=.+.....+.++
T Consensus 162 yk~~~~---L-~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~Er---Al~-----Yl~~~idqi~~~~~~LqlViVE~ 229 (948)
T KOG1058|consen 162 YKNFEH---L-IPDAPELIESFLLTEQDPSCKRNAFLMLFTTDPER---ALN-----YLLSNIDQIPSFNDSLQLVIVEL 229 (948)
T ss_pred Hhhhhh---h-cCChHHHHHHHHHhccCchhHHHHHHHHHhcCHHH---HHH-----HHHhhHhhccCccHHHHHHHHHH
Confidence 743111 1 122222333333 4788889999887776654332 100 11122222222223444444555
Q ss_pred HHHHHhccCCcccccccCchHHHHHHhccCCCCchhHhHHHHHHHHhhcCCCcccccccccCCChHhhhhccC-CCCHHH
Q 000133 1465 LRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLD-SPAPAV 1543 (2100)
Q Consensus 1465 L~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~~~~~~~~l~~Lv~~L~-~~~~~v 1543 (2100)
++.-..... ...++-+.++..+|.+.+ +.+.-.|..+|.+++.+++.... ....+++++. ..+-.+
T Consensus 230 Irkv~~~~p----~~~~~~i~~i~~lL~sts--saV~fEaa~tlv~lS~~p~alk~-------Aa~~~i~l~~kesdnnv 296 (948)
T KOG1058|consen 230 IRKVCLANP----AEKARYIRCIYNLLSSTS--SAVIFEAAGTLVTLSNDPTALKA-------AASTYIDLLVKESDNNV 296 (948)
T ss_pred HHHHHhcCH----HHhhHHHHHHHHHHhcCC--chhhhhhcceEEEccCCHHHHHH-------HHHHHHHHHHhccCcch
Confidence 544443111 112345667777776654 55555555555554433222111 1112222221 122223
Q ss_pred HHHHHHHHHHhhccccccccccccCchHHHHHHhccCCHHHHHHHHHHHHHhhcCChh-HHHhccChHHHHHHhcccCCC
Q 000133 1544 QQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPN-EIAKEGGVTELSKIILQADPS 1622 (2100)
Q Consensus 1544 q~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~lL~s~~~~vr~~Al~AL~~Ls~~~~n-~l~~~G~i~~Ll~lL~~~~~~ 1622 (2100)
+.-...-|..+. ..+...+ .|.+--.++.|++.+.++|..++.-...|..++.- .+. .-|-+-+...++.
T Consensus 297 klIvldrl~~l~--~~~~~il--~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv-----~~Lkke~~kT~~~ 367 (948)
T KOG1058|consen 297 KLIVLDRLSELK--ALHEKIL--QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIV-----QFLKKEVMKTHNE 367 (948)
T ss_pred hhhhHHHHHHHh--hhhHHHH--HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHH-----HHHHHHHHhcccc
Confidence 333333333332 1111111 14445567788999999999999998888877632 221 2222223221111
Q ss_pred ---chHHHHHHHHHHHHhhhcccchhh--hcccHHHHHHHhhcCCHHHHHHHHHHHHHhccCChhhH
Q 000133 1623 ---LPHALWESAASVLSSILQFSSEFY--LEVPVAVLVRLLRSGSEGTVIGSLNALLVLESDDGTSA 1684 (2100)
Q Consensus 1623 ---~~~~l~e~a~~~L~~i~~~~~~~~--~~~~v~~Lv~ll~~~~~~~~~~a~~aL~~L~~~~~~~~ 1684 (2100)
--...+.....++.--+ ..|. ....|+.++..+++.++..-...+..+.......+..|
T Consensus 368 e~d~~~~yRqlLiktih~ca---v~Fp~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr 431 (948)
T KOG1058|consen 368 ESDDNGKYRQLLIKTIHACA---VKFPEVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR 431 (948)
T ss_pred ccccchHHHHHHHHHHHHHh---hcChHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH
Confidence 11111221222221111 0111 12368889999988887655555555543333333333
No 244
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.75 E-value=12 Score=50.25 Aligned_cols=277 Identities=15% Similarity=0.089 Sum_probs=160.6
Q ss_pred hccCChhhHHHHHH-HHHHhhcCCchhhHHHHhhhcchhHHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHhhcC
Q 000133 1281 LNTGLEREQHAAIA-ALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARC 1359 (2100)
Q Consensus 1281 L~~~~~~~~~~A~~-aL~~La~~~~~~~~~~~~v~~gal~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~~~~~~~ 1359 (2100)
|.+.++..+..|+. .+.++..+++-. -..+.+++.+.. .|.++++..--=|........ . -..-+
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~dms---------sLf~dViK~~~t-rd~ElKrL~ylYl~~yak~~P---~-~~lLa 93 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGEDMS---------SLFPDVIKNVAT-RDVELKRLLYLYLERYAKLKP---E-LALLA 93 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCChH---------HHHHHHHHHHHh-cCHHHHHHHHHHHHHHhccCH---H-HHHHH
Confidence 55666666777665 566677666511 234555665553 466777766555554443321 0 11235
Q ss_pred hHHHHHHHhcCCchHHHHHHHHHHHhcccHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCchhhHHHHh
Q 000133 1360 VEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVK 1439 (2100)
Q Consensus 1360 i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k~~i~~ 1439 (2100)
++.+..=+.++++..|..|++.+..+-..+- -..+++++.+.++++++.||+.|+-|+.++=+-+ +....+
T Consensus 94 vNti~kDl~d~N~~iR~~AlR~ls~l~~~el------~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld---~~l~~~ 164 (757)
T COG5096 94 VNTIQKDLQDPNEEIRGFALRTLSLLRVKEL------LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD---KDLYHE 164 (757)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHhcChHHH------HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC---Hhhhhc
Confidence 6777777889999999999999988854332 2346899999999999999999999999986443 345556
Q ss_pred cCcHHHHHHHhccCChhHHHHHHHHHHHHHhccCCcccccccCchHHHHHHhccCC----C--CchhHhHHHHHHHHhhc
Q 000133 1440 AGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSE----F--GPDGQHSALQVLVNILE 1513 (2100)
Q Consensus 1440 ~~~i~~lv~~L~~~~~~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~----~--~~~~~~~A~~~L~nL~~ 1513 (2100)
.|.+..+..++.+.++.+...|.-.|.++-... . .+-.......+.+.+ . ..+.+..-.+.|..-..
T Consensus 165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e~--a-----~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~ 237 (757)
T COG5096 165 LGLIDILKELVADSDPIVIANALASLAEIDPEL--A-----HGYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTERVP 237 (757)
T ss_pred ccHHHHHHHHhhCCCchHHHHHHHHHHHhchhh--h-----hhHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHccCC
Confidence 778888888888887777776655555544330 1 001111122222111 0 02333333344433211
Q ss_pred CCCcccccccccCCChHhhhhccCCCCHHHHHHHHHHHHHhhccccccccccccCchHHHHHHhccCCHHHHHHHHHHHH
Q 000133 1514 HPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALV 1593 (2100)
Q Consensus 1514 ~~~~~~~~~~~~~~~l~~Lv~~L~~~~~~vq~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~lL~s~~~~vr~~Al~AL~ 1593 (2100)
.... ....+...+...+...++.+-..++..+-.+....+...... -..++|+.++..+ +......+.=+.
T Consensus 238 ~~~~------s~~~~~~~~~~~~~~~n~~vl~~av~~i~~l~~~~~~~~~~~--~~~~~l~~Ll~~~-~~~~~~vl~~~~ 308 (757)
T COG5096 238 TTPD------SAEDFEERLSPPLQHNNAEVLLIAVKVILRLLVFLPSNNLFL--ISSPPLVTLLAKP-ESLIQYVLRRNI 308 (757)
T ss_pred CCCC------cHHHHHHhccchhhhCcHHHHHHHHHHHHHHhhhhccccHHH--hhccHHHHHHcCC-HHHHHHHHHHhh
Confidence 1111 112234445555667788888888888777765433333221 2236777777655 555555544444
Q ss_pred Hhh
Q 000133 1594 SIA 1596 (2100)
Q Consensus 1594 ~Ls 1596 (2100)
.+.
T Consensus 309 ~~~ 311 (757)
T COG5096 309 QID 311 (757)
T ss_pred HHH
Confidence 433
No 245
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=94.70 E-value=0.045 Score=73.32 Aligned_cols=114 Identities=19% Similarity=0.301 Sum_probs=84.8
Q ss_pred CCceeeeeccchhhhhhCC-Cc---ceEEEe-cCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccC
Q 000133 1979 GTLVVIIKRGNNMKQSVGN-PS---VYCKLT-LGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMG 2053 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~~~~-~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2053 (2100)
|++-|+|.+.+.++.+-+. .. -+--++ ++-+.+ .|||+++..||+|||.|-=-+. -.+|+|.|+|+|++.|.
T Consensus 436 GVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~g-kT~v~~nt~nPvwNEt~Yi~ln--s~~d~L~LslyD~n~~~ 512 (1227)
T COG5038 436 GVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIG-KTRVKKNTLNPVWNETFYILLN--SFTDPLNLSLYDFNSFK 512 (1227)
T ss_pred EEEEEEEeeccCcccccccccCCCCceEEEEeccccCC-ccceeeccCCccccceEEEEec--ccCCceeEEEEeccccC
Confidence 9999999999999998844 22 222333 333333 8999999999999999977666 67899999999999997
Q ss_pred Cccc-ceEEEEEeeEEeeccccc-ceeecCCCCCCCCcceEEEEEe
Q 000133 2054 KSSF-GKVTIQIDRVVMLGAVAG-EYTLLPESKSGPSRNLEIEFLW 2097 (2100)
Q Consensus 2054 ~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 2097 (2100)
++.. |+..|.+......+.... .|.+.-++|. .-| |.-++.|
T Consensus 513 sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~~k~-vGr-L~yDl~f 556 (1227)
T COG5038 513 SDKVVGSTQLDLALLHQNPVKKNELYEFLRNTKN-VGR-LTYDLRF 556 (1227)
T ss_pred CcceeeeEEechHHhhhccccccceeeeeccCcc-ceE-EEEeeee
Confidence 7766 999999888887666655 7777655542 112 4455555
No 246
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.62 E-value=0.8 Score=60.82 Aligned_cols=166 Identities=17% Similarity=0.197 Sum_probs=108.2
Q ss_pred hCCCCHHHHHHH-HHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHH
Q 000133 451 LGLSSEQQQECS-VALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVP 529 (2100)
Q Consensus 451 L~s~~~~v~~~A-~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~ 529 (2100)
+.+.+...+..| -.++..++.+.+ . .. -.+.+++...+.+.+++.-.-.-|.+.+...|+-. +. ++.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d-m-ss-----Lf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~--lL---avN 95 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED-M-SS-----LFPDVIKNVATRDVELKRLLYLYLERYAKLKPELA--LL---AVN 95 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC-h-HH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHH--HH---HHH
Confidence 344444444333 356677765433 1 11 24556666666677777766666666665444221 11 344
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHH
Q 000133 530 ALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVET 609 (2100)
Q Consensus 530 ~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~ 609 (2100)
.+.+=++++++.+|-.|.++|+.+- .+++. ...+++
T Consensus 96 ti~kDl~d~N~~iR~~AlR~ls~l~--------------------------------------~~el~------~~~~~~ 131 (757)
T COG5096 96 TIQKDLQDPNEEIRGFALRTLSLLR--------------------------------------VKELL------GNIIDP 131 (757)
T ss_pred HHHhhccCCCHHHHHHHHHHHHhcC--------------------------------------hHHHH------HHHHHH
Confidence 5555555556666655555554441 01101 123888
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 000133 610 MIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIF 675 (2100)
Q Consensus 610 Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~ 675 (2100)
+.+++.++++.+|+.|+.|+.++.+-+++. ..+.|.+..+..++.+.++.+...|..++..+.
T Consensus 132 ik~~l~d~~ayVRk~Aalav~kly~ld~~l---~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 132 IKKLLTDPHAYVRKTAALAVAKLYRLDKDL---YHELGLIDILKELVADSDPIVIANALASLAEID 194 (757)
T ss_pred HHHHccCCcHHHHHHHHHHHHHHHhcCHhh---hhcccHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 999999999999999999999999876665 556788999999999999999999999998883
No 247
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=94.58 E-value=0.07 Score=68.91 Aligned_cols=119 Identities=22% Similarity=0.378 Sum_probs=88.3
Q ss_pred cCCCceeeeeccchhhhhhCCC--------cceEEEecC---CCCCcccc-ccccCCCccccccceeccccCCCCCeEEE
Q 000133 1977 LPGTLVVIIKRGNNMKQSVGNP--------SVYCKLTLG---NTPPRQTK-IVSTGPNPEWEESFAWSFEIPPKGQKLHI 2044 (2100)
Q Consensus 1977 i~~~~~~~~~r~~~~~~~~~~~--------~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2044 (2100)
.| +|.|.|+-+...-..++.+ -++.. .+| |.--.+|| |-.++-+|.|+|+|+|-+. -|.=-.+.+
T Consensus 615 ~~-tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~Ve-I~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~-vPELAliRF 691 (746)
T KOG0169|consen 615 KK-TLKIKIISGQGWLPDFGKTKFGEISDPDVYVE-IAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLS-VPELALIRF 691 (746)
T ss_pred Cc-eeEEEEEecCcccCCCCCCcccccCCCCEEEE-EcccccchhhhhceeeccCCcCcccCCeEEEEEe-ccceeEEEE
Confidence 45 6889999888554444333 23333 556 67778899 5567789999999999999 455569999
Q ss_pred EeecCCccCCccc-ceEEEEEeeEEeecccccceeecCCCCCCCCcceEEEEEecCC
Q 000133 2045 SCKNKSKMGKSSF-GKVTIQIDRVVMLGAVAGEYTLLPESKSGPSRNLEIEFLWSNK 2100 (2100)
Q Consensus 2045 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2100 (2100)
+|++.+.-|++.| |..||++..... -|.--+=++-+++.=++-+|=++|.|.++
T Consensus 692 ~V~d~d~~~~ddF~GQ~tlP~~~L~~--GyRhVpL~~~~G~~~~~asLfv~i~~~~~ 746 (746)
T KOG0169|consen 692 EVHDYDYIGKDDFIGQTTLPVSELRQ--GYRHVPLLSREGEALSSASLFVRIAIVER 746 (746)
T ss_pred EEEecCCCCcccccceeeccHHHhhC--ceeeeeecCCCCccccceeEEEEEEEecC
Confidence 9999999997777 999999987654 24444444444556677889999999875
No 248
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=94.58 E-value=0.93 Score=61.30 Aligned_cols=289 Identities=17% Similarity=0.142 Sum_probs=178.0
Q ss_pred HHHHHhhcC-CCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhcc---CCcccHH
Q 000133 403 RLLVGLITM-ATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSN---ENDDSKW 478 (2100)
Q Consensus 403 ~~Lv~lL~~-~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~---~~~~~~~ 478 (2100)
..+...++. .....+..|++.|..++..-.+- ... ...+|.++.++.++..+||..|..+|+.+.. ..+..-.
T Consensus 425 s~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de--~~L-DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~da 501 (1431)
T KOG1240|consen 425 SVLTSCIRALKTIQTKLAALELLQELSTYIDDE--VKL-DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDA 501 (1431)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHhhhcchH--HHH-hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccc
Confidence 334344432 35677889999999988753331 111 2678999999999999999999988887643 2233333
Q ss_pred HHHhcCChHHHHHhccCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChh-----HHHHHHHHHHH
Q 000133 479 AITAAGGIPPLVQILESG-SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSAN-----GKEIAAKTLNH 552 (2100)
Q Consensus 479 ~i~~~g~i~~Lv~lL~~~-~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~-----~~~~Aa~aL~~ 552 (2100)
.|.-.-..|.|-.++.+. ...+|-.-+..|..|+.- ..|- .+.+---....++.+.+.+ -...-..+|..
T Consensus 502 niF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~t--A~rF--le~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~ 577 (1431)
T KOG1240|consen 502 NIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKT--AYRF--LELTQELRQAGMLNDPNSETAPEQNYNTELQALHH 577 (1431)
T ss_pred hhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHH--HHHH--HHHHHHHHhcccccCcccccccccccchHHHHHHH
Confidence 444555889999998884 555666566677777642 2221 1111000111112221111 01111222221
Q ss_pred HhcCCCCCcHHH-HHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000133 553 LIHKSDTATISQ-LTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAG 631 (2100)
Q Consensus 553 L~~~~~~~~i~~-L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~ 631 (2100)
.+.+ ...++.+..+-||..-.+.++-|+.-.... -.+.-.++.|+.+|++.++.+|-.=...+..
T Consensus 578 --------~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~------ksND~iLshLiTfLNDkDw~LR~aFfdsI~g 643 (1431)
T KOG1240|consen 578 --------TVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKE------KSNDVILSHLITFLNDKDWRLRGAFFDSIVG 643 (1431)
T ss_pred --------HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc------ccccchHHHHHHHhcCccHHHHHHHHhhccc
Confidence 2333 334556666678888888888776643311 1122348899999999999998877776665
Q ss_pred HhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHH
Q 000133 632 IFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQAT 711 (2100)
Q Consensus 632 L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa 711 (2100)
++..-. ..-+....+|.|.+.|.++.+.|...|++++..|+... -..+... .+.++....+|-+|+.=+|..++
T Consensus 644 vsi~VG---~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~-ll~K~~v--~~i~~~v~PlL~hPN~WIR~~~~ 717 (1431)
T KOG1240|consen 644 VSIFVG---WRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG-LLRKPAV--KDILQDVLPLLCHPNLWIRRAVL 717 (1431)
T ss_pred eEEEEe---eeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc-ccchHHH--HHHHHhhhhheeCchHHHHHHHH
Confidence 554311 11245578999999999999999999999999986532 1222212 23345555678889999999988
Q ss_pred HHHHHHh
Q 000133 712 CALANLI 718 (2100)
Q Consensus 712 ~aL~~L~ 718 (2100)
..+..+.
T Consensus 718 ~iI~~~~ 724 (1431)
T KOG1240|consen 718 GIIAAIA 724 (1431)
T ss_pred HHHHHHH
Confidence 8887765
No 249
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=94.57 E-value=1.4 Score=51.21 Aligned_cols=249 Identities=13% Similarity=0.050 Sum_probs=148.8
Q ss_pred hCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcC-ChHHHHHhccCC--CHHHHHHHHHHHHHHhcCChhhHHHHHh-CC
Q 000133 451 LGLSSEQQQECSVALLCLLSNENDDSKWAITAAG-GIPPLVQILESG--SAKAKEDSASILRNLCNHSEDIRACVES-AD 526 (2100)
Q Consensus 451 L~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g-~i~~Lv~lL~~~--~~~vre~A~~aL~~L~~~~~~~~~~i~~-~g 526 (2100)
+++-++-.+.-|+.+|.++.. .++.+..+-..+ .-..++.++++. ..++|.+...+++-++-. +.+...+-+ ..
T Consensus 158 ~Q~i~~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~-~~~aqdi~K~~d 235 (432)
T COG5231 158 SQLIDFLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFS-KECAQDIDKMDD 235 (432)
T ss_pred HHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC-HHHHHHHHHHHH
Confidence 333344467778999999984 677776665544 345677777764 578899999999999874 555543333 34
Q ss_pred cHHHHHHHhhcC-ChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccC-chhHHHHhhhcc
Q 000133 527 AVPALLWLLKNG-SANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVS-FSDILREGSAAN 604 (2100)
Q Consensus 527 ~i~~Lv~lL~~~-~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~-~~~~~~~~i~~~ 604 (2100)
.+.-|+++.+.. ..++-+.++..+.|++..+..+.|..++- +.+ +..|...+....- .+++.. -
T Consensus 236 li~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~ll-l~~--------~~k~vq~L~erkysDEel~~-d---- 301 (432)
T COG5231 236 LINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLL-LND--------ISKCVQVLLERKYSDEELVI-D---- 301 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHh-hcc--------hHHHHHHHHhcCCChHHHHH-H----
Confidence 567777877763 45677888889999987554444433221 111 2222222222211 111100 0
Q ss_pred chHHHHHHHhcCCCHHHHH---HHHHH-HHHHhcCChh--------hHHHHHhc--CchHHHHHhhcCCCHH-HHHHHHH
Q 000133 605 DAVETMIKILSSTKEETQA---KSASA-LAGIFETRKD--------LRESSIAV--KTLWSVMKLLDVGSEC-ILVEASR 669 (2100)
Q Consensus 605 ~~i~~Lv~lL~s~~~~~~~---~Aa~a-L~~L~~~~~~--------~~~~~~~~--g~v~~Lv~lL~~~~~~-v~~~aa~ 669 (2100)
+..+-+-|.....++.. .-+.. =+.+++.+++ +.+.+.+. .++..|..+++...+. ...-||.
T Consensus 302 --i~~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~ 379 (432)
T COG5231 302 --IERIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACS 379 (432)
T ss_pred --HHHHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHh
Confidence 22222222211111100 00010 1122333221 33333333 3788899999777665 3445777
Q ss_pred HHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 000133 670 CLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLI 718 (2100)
Q Consensus 670 aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~ 718 (2100)
-+..+.+..|+.+.. +...|+-..++.++.+++++||.+|..|+..++
T Consensus 380 Di~~~Vr~~PE~~~v-l~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 380 DIFQLVRASPEINAV-LSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred hHHHHHHhCchHHHH-HHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 888888887766666 888999999999999999999999999998765
No 250
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.36 E-value=15 Score=47.71 Aligned_cols=204 Identities=16% Similarity=0.097 Sum_probs=130.1
Q ss_pred CcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 000133 442 EGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRAC 521 (2100)
Q Consensus 442 g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~ 521 (2100)
+.+..+++-..+++..||..++..|.-+.. .......-+-.+....+..-+.+..+.+|-+|+.+|..+-....+-
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d-~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de--- 160 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSD-ENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE--- 160 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC---
Confidence 566777888889999999999999999884 3333333344455666777777888999999999999997431111
Q ss_pred HHhCCcHHHHHHHhhc-CChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHH-HHHHHHHhccCchhHHHH
Q 000133 522 VESADAVPALLWLLKN-GSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVL-DALKSMLSVVSFSDILRE 599 (2100)
Q Consensus 522 i~~~g~i~~Lv~lL~~-~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~-~aL~~l~~~~~~~~~~~~ 599 (2100)
+..++..+..++++ +++++++.+ |.+++- ++.+.|.+++--+|-+..+|.-+. ++|-.+ + .+.
T Consensus 161 --e~~v~n~l~~liqnDpS~EVRRaa---LsnI~v--dnsTlp~IveRarDV~~anRrlvY~r~lpki-------d-~r~ 225 (892)
T KOG2025|consen 161 --ECPVVNLLKDLIQNDPSDEVRRAA---LSNISV--DNSTLPCIVERARDVSGANRRLVYERCLPKI-------D-LRS 225 (892)
T ss_pred --cccHHHHHHHHHhcCCcHHHHHHH---HHhhcc--CcccchhHHHHhhhhhHHHHHHHHHHhhhhh-------h-hhh
Confidence 23467788888885 677888754 445543 456788888776665554443322 222211 1 011
Q ss_pred hhhccchHHHHHHHhcCCCHHHHHHHHHHHHH-HhcCChhhHHHHHhcCchHHHHHhh-cCCCHHHHHHHHHHHHHH
Q 000133 600 GSAANDAVETMIKILSSTKEETQAKSASALAG-IFETRKDLRESSIAVKTLWSVMKLL-DVGSECILVEASRCLAAI 674 (2100)
Q Consensus 600 ~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~-L~~~~~~~~~~~~~~g~v~~Lv~lL-~~~~~~v~~~aa~aL~~L 674 (2100)
... ..-+..+-+-|.+.+..++.++..+|.. .-+ . ..|-++-|++-+ -+.+.++...+..++-..
T Consensus 226 lsi-~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~--------~-~dgni~ElL~~ldvsnss~vavk~lealf~~ 292 (892)
T KOG2025|consen 226 LSI-DKRVLLLEWGLNDREFSVKGALVDAILSGWLR--------F-SDGNILELLERLDVSNSSEVAVKALEALFSG 292 (892)
T ss_pred hhH-HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhh--------h-ccccHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 100 0124555566777888888888887764 111 1 124455555555 556668999999988875
No 251
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=94.16 E-value=1.3 Score=54.02 Aligned_cols=201 Identities=15% Similarity=0.112 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhcCCHHHHHHHHHHHHhhhcc---
Q 000133 8 LASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKE--- 84 (2100)
Q Consensus 8 ~~~v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~--- 84 (2100)
..++.++|+.+.+.+ .+.|+.++..+..+-...=....+-......+..+.+.++.|..+-+..|+++++-+|-.
T Consensus 42 e~~L~~~Id~l~eK~--~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~ 119 (309)
T PF05004_consen 42 EDKLKEAIDLLTEKS--SSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGA 119 (309)
T ss_pred HHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCC
Confidence 356888999887754 678899999988777554211111111234577888889888877778888888888733
Q ss_pred chhhHHHHhcCChHHHHHhhcCCC--HHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHh--hccCC------
Q 000133 85 NELRVKVLLGGCIPPLLGLLKSSS--AEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQL--KNGLK------ 154 (2100)
Q Consensus 85 ~~~~~~i~~~g~i~~Lv~lL~s~~--~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL--~~~~~------ 154 (2100)
.+....+.. ...|+|...+.+++ ...|..|+.||.-++.-+-.+. .........+..+|... +....
T Consensus 120 g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~--~~~~~~~~~le~if~~~~~~~~~~~~~~~~ 196 (309)
T PF05004_consen 120 GEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDE--EETEELMESLESIFLLSILKSDGNAPVVAA 196 (309)
T ss_pred CccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCCh--hHHHHHHHHHHHHHHHHhcCcCCCcccccC
Confidence 122333322 45788888887654 4556677778887666211111 00000001122122221 11111
Q ss_pred -CcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHh
Q 000133 155 -SGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMM 213 (2100)
Q Consensus 155 -~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~ 213 (2100)
.++.+...++.+-.-|...-+...-.-.-...+|.|..+|.+++.++|..|..+|+-+.
T Consensus 197 ~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 197 EDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred CCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 11234444444433343333332111112345999999999999999999999986553
No 252
>PLN02230 phosphoinositide phospholipase C 4
Probab=94.16 E-value=0.064 Score=69.43 Aligned_cols=114 Identities=20% Similarity=0.307 Sum_probs=77.7
Q ss_pred CCCceeeeeccchhh--------hhhCCCc-ceEEEecC---CCCCccccccccCCCccccccceeccccCCCCCeEEEE
Q 000133 1978 PGTLVVIIKRGNNMK--------QSVGNPS-VYCKLTLG---NTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHIS 2045 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~--------~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2045 (2100)
+.+|.|+|+-+..+- ..|+... .+..--+| |...++|||++++-||.|+|+|.|.+.. |.=-.|.++
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~v-PELAllRf~ 546 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAV-PELALLRVE 546 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEc-CceeEEEEE
Confidence 567999999887642 2233323 33344455 4455889999999999999999999885 555689999
Q ss_pred eecCCccCCccc-ceEEEEEeeEEeecccccceeecCCCCCC---CCcceEEEEEe
Q 000133 2046 CKNKSKMGKSSF-GKVTIQIDRVVMLGAVAGEYTLLPESKSG---PSRNLEIEFLW 2097 (2100)
Q Consensus 2046 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 2097 (2100)
|++++.++++.| |..+|+++.+.. |-.++.--+++| ++-+|=+.|.|
T Consensus 547 V~d~d~~~~ddfiGQ~~lPv~~Lr~-----GyR~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 547 VHEHDINEKDDFGGQTCLPVSEIRQ-----GIHAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EEECCCCCCCCEEEEEEcchHHhhC-----ccceEeccCCCcCCCCCCeeEEEEEe
Confidence 999998877765 999999987643 222221113333 23457777776
No 253
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.13 E-value=0.22 Score=49.15 Aligned_cols=70 Identities=14% Similarity=0.020 Sum_probs=54.5
Q ss_pred hcChHHHHHHHhcCCchHHHHHHHHHHHhcccHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 000133 1357 ARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLG 1427 (2100)
Q Consensus 1357 ~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La 1427 (2100)
...+++++..+.+.+..+|+.|+++|++++..........-..+.+.|+.++.+.++.||..| ..|-++-
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHHh
Confidence 456788899999999999999999999999533333333446778999999999999998887 4454443
No 254
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=94.11 E-value=0.056 Score=65.54 Aligned_cols=101 Identities=21% Similarity=0.444 Sum_probs=76.7
Q ss_pred CCCceeeeeccchhhhh--hCC-CcceEEEecCCCCCccccccccCCCcccccc-ceeccccCCCC-CeEEEEeecCCcc
Q 000133 1978 PGTLVVIIKRGNNMKQS--VGN-PSVYCKLTLGNTPPRQTKIVSTGPNPEWEES-FAWSFEIPPKG-QKLHISCKNKSKM 2052 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~ 2052 (2100)
||-|-|.|.-..++--. -+. +.+|.-+++|| .|-+|.|.-++.||+|+.. |.|-+|....- +.|.|.+.+|.|+
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n-~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dty 80 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFAN-TTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTY 80 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecc-cceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccc
Confidence 88888988877665322 222 55888899986 4678999999999999964 66666655544 4999999999999
Q ss_pred -CCcccceEEEEEeeEEeec----------ccccceee
Q 000133 2053 -GKSSFGKVTIQIDRVVMLG----------AVAGEYTL 2079 (2100)
Q Consensus 2053 -~~~~~~~~~~~~~~~~~~~----------~~~~~~~~ 2079 (2100)
-++-+|||.|.||-+..+. .+||-|-+
T Consensus 81 sandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pi 118 (1169)
T KOG1031|consen 81 SANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPI 118 (1169)
T ss_pred ccccccceeeeccChHHHHhHHhhhcCCceEEeeeeec
Confidence 5677899999999876542 35676666
No 255
>PLN02352 phospholipase D epsilon
Probab=94.09 E-value=0.095 Score=69.14 Aligned_cols=99 Identities=22% Similarity=0.347 Sum_probs=72.4
Q ss_pred CCCceeeeeccchhhhhhCC-------CcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCC
Q 000133 1978 PGTLVVIIKRGNNMKQSVGN-------PSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKS 2050 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2050 (2100)
=|+|-+|||-.+-+++.+.. ...+.-+.+++.+-=.| +++.||+|+|.|---.. -+..-.+++.||+
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~a-h~~~~~~~f~vk~-- 82 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCA-HPLDSTITITLKT-- 82 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEee-eecCCcEEEEEec--
Confidence 48999999988756555441 13455666665444444 77889999999976554 2222368999999
Q ss_pred ccCCcccceEEEEEeeEEeecc-cccceeecCCCC
Q 000133 2051 KMGKSSFGKVTIQIDRVVMLGA-VAGEYTLLPESK 2084 (2100)
Q Consensus 2051 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 2084 (2100)
|-.-+|++.|+.++++.-+. +.|-|.+..+++
T Consensus 83 --~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~ 115 (758)
T PLN02352 83 --KCSILGRFHIQAHQIVTEASFINGFFPLIMENG 115 (758)
T ss_pred --CCeEEEEEEEEHHHhhCCCcccceEEEcccCCC
Confidence 56668999999999988656 999999977754
No 256
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.95 E-value=0.28 Score=48.42 Aligned_cols=94 Identities=17% Similarity=0.113 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccC
Q 000133 664 LVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEG 743 (2100)
Q Consensus 664 ~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~ 743 (2100)
++.+..+|...+.+.+.. ..-.-...+++++..+.+++..||..|+.+|.|++.......-..-+++.+.|.+++.+.
T Consensus 3 R~ggli~Laa~ai~l~~~--~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKD--ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred hhHHHHHHHHHHHHchHh--HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 455666666666555332 222334578999999999999999999999999983322111113478999999999999
Q ss_pred ChhHHHHHHHHHHHHHh
Q 000133 744 TISGKTLAAAAIARLLH 760 (2100)
Q Consensus 744 ~~~~~~~Aa~aL~~l~~ 760 (2100)
++.+|..| .-|-++++
T Consensus 81 d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 81 DENVRSAA-ELLDRLLK 96 (97)
T ss_pred chhHHHHH-HHHHHHhc
Confidence 98887765 67777664
No 257
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=93.90 E-value=0.59 Score=57.79 Aligned_cols=148 Identities=13% Similarity=0.159 Sum_probs=103.5
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHh-hCCCCHHHHHHHHHHHHHhccCCcccHHHHHhc
Q 000133 405 LVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISL-LGLSSEQQQECSVALLCLLSNENDDSKWAITAA 483 (2100)
Q Consensus 405 Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~l-L~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~ 483 (2100)
+-+++.+.++-.|.+.+.+++.-..+..+ .|.+..|+.. ..+.+++++++|+.+|+-+|..+++
T Consensus 521 I~ell~d~ds~lRy~G~fs~alAy~GTgn-------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~-------- 585 (926)
T COG5116 521 INELLYDKDSILRYNGVFSLALAYVGTGN-------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD-------- 585 (926)
T ss_pred HHHHhcCchHHhhhccHHHHHHHHhcCCc-------chhHhhhheeecccCchHHHHHHHHheeeeEecCcc--------
Confidence 44566777777777777666654444322 3678888886 7788999999999999999875544
Q ss_pred CChHHHHHhccCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC---
Q 000133 484 GGIPPLVQILESG-SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT--- 559 (2100)
Q Consensus 484 g~i~~Lv~lL~~~-~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~--- 559 (2100)
.++..+++|..+ ++.+|...+.+|+-.|..... +. ++..|-.++.+...-+++.|+.+++-+..+..+
T Consensus 586 -~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~-~~------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Ln 657 (926)
T COG5116 586 -LLVGTVELLSESHNFHVRAGVAVALGIACAGTGD-KV------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELN 657 (926)
T ss_pred -hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc-HH------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccC
Confidence 677788887654 899999999999988875322 21 345555667777888999999998877655544
Q ss_pred ----CcHHHHHHHhhcCCcc
Q 000133 560 ----ATISQLTALLTSDLPE 575 (2100)
Q Consensus 560 ----~~i~~L~~lL~~~~~~ 575 (2100)
+.+..+..++.+.+.+
T Consensus 658 p~v~~I~k~f~~vI~~Khe~ 677 (926)
T COG5116 658 PNVKRIIKKFNRVIVDKHES 677 (926)
T ss_pred hhHHHHHHHHHHHHhhhhHh
Confidence 3344455555544443
No 258
>PRK09169 hypothetical protein; Validated
Probab=93.86 E-value=58 Score=48.74 Aligned_cols=219 Identities=21% Similarity=0.130 Sum_probs=101.4
Q ss_pred cccccHHHHHHhcCCCCCCCCchHHHHHHHHHHhhcCchhhhHHHhcCcHHHHHHHHhcCCcchHHHHHHH-HHHHhhcC
Q 000133 1142 TSRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDATEEAATD-LLGILFSS 1220 (2100)
Q Consensus 1142 ~~~~~i~~Lv~~l~~~~~~~~~~~~Al~~L~~la~~~~~~r~~i~e~G~i~~L~~~L~s~~~~~~~~~~~~-ll~~l~~~ 1220 (2100)
.....+..+++-+++-|+.......+..+-.+++. ++..+.. ++.-.+..+++.|+.-+....+..... +-.-|-.+
T Consensus 160 l~~~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~-~~~l~~a-l~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~ 237 (2316)
T PRK09169 160 LDAISFALLLNALSKWPDNTDCQTAAEQLADRLAS-DSRLLQA-MDAQEVANALNALSKWPDSPRCRNAAERLAERLADE 237 (2316)
T ss_pred hhhHHHHHHHHHhccCCCchHHHHHHHHHHHHhcc-CHHHHHh-cchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcC
Confidence 44566778888887666655444445544445544 4433333 345567778888887666554444433 44446566
Q ss_pred HHHHhhhcccCcHHHHHHHHh-cCCHHHHHHHHHHHHH-hhcchhhhhhhhhcCChHHHHHhhccCC-hhhHHHHHHHH-
Q 000133 1221 AEIRRHESAFAAVSQLVAVLR-LGGRGARYSAAKALES-LFSADHIRNAESARQAVQPLVEILNTGL-EREQHAAIAAL- 1296 (2100)
Q Consensus 1221 ~~~~~~~~~~~al~~Li~~L~-~~~~~~r~~Aa~aL~~-L~~~~~~~~~i~~~~~i~~Lv~lL~~~~-~~~~~~A~~aL- 1296 (2100)
+..+..+ +..-+.-+++.|. -.+...-..|+..|.. |+....-+. -.+++.|...+..|..-+ .+..+.|+..|
T Consensus 238 ~~l~~~l-~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~lr~-~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA 315 (2316)
T PRK09169 238 PGLLQSL-RAQEVALLLNALSKWPDDEACRQAAEALAARLAREPGLRL-ALDPQGVANALNALSKWPDTEACRQAAEALA 315 (2316)
T ss_pred hHHHHhc-CHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChhhhh-hcCHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 6665432 3445556666664 2222222334444433 332223222 244556666666664422 22233333333
Q ss_pred HHhhcCCchhhHHHHhhhcchhHHHHHHHhhcCChh-hHHHHHHHHHHHhcCcchHHHHHhhcChHHHHHHHh
Q 000133 1297 VRLLSENPSRALAVADVEMNAVDVLCRILSSNCSME-LKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLV 1368 (2100)
Q Consensus 1297 ~~La~~~~~~~~~~~~v~~gal~~L~~lL~~~~~~~-~~~~a~~~L~~L~~~~~~r~~~~~~~~i~~Lv~lL~ 1368 (2100)
..|.........+ +...+.-.+.-|+.-++.+ .+..+..+...|..++..+..+.....-+.|-.+=+
T Consensus 316 ~rL~~~~~l~~~~----~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~~~~~l~~~~npQelANaLnALSK 384 (2316)
T PRK09169 316 ERLAQERGLLQAM----NAQAVANALNALSKWPDEEACRAAAEALAARLARDAGLRRALNAQELANALNALSK 384 (2316)
T ss_pred HHHHhChhhhhhC----CHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHHc
Confidence 3343322221111 2222322223333323333 333344445556556655544444443334433333
No 259
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.71 E-value=0.66 Score=62.71 Aligned_cols=178 Identities=14% Similarity=0.075 Sum_probs=138.3
Q ss_pred HHHHHHHhc----CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCchh
Q 000133 607 VETMIKILS----STKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLD-VGSECILVEASRCLAAIFLSVREN 681 (2100)
Q Consensus 607 i~~Lv~lL~----s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~-~~~~~v~~~aa~aL~~L~~~~~~~ 681 (2100)
.|.+++..+ .++|++|.+|.-||+.+..-+.++++ ..+|.|...+. ++++.++-.+.-+++-++...+
T Consensus 921 ~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fp-- 993 (1251)
T KOG0414|consen 921 APIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP-- 993 (1251)
T ss_pred HHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhcc--
Confidence 567777774 45899999999999999877666655 35788999995 8888888888888888876543
Q ss_pred HHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhc
Q 000133 682 REVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHS 761 (2100)
Q Consensus 682 ~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~ 761 (2100)
+- -..+-+.|..-++++++.+|+.|...|.+|+...-... -|.+..+..++.+++..++.-|-.-..+|..-
T Consensus 994 nl----ie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKV----KGql~eMA~cl~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen 994 NL----IEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKV----KGQLSEMALCLEDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred cc----cchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHh----cccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc
Confidence 22 24588889999999999999999999999986554433 58899999999999999888877777777755
Q ss_pred CccchhHhhhhhccCcHHHHHHhhhhcc--cccchHhHHHHHHHHHHcCC
Q 000133 762 RKIDYTITDCVNRAGTVLALVSFLESAS--GSVATSEALDALAILSRSGG 809 (2100)
Q Consensus 762 ~~~~~~~~~~~~~~g~l~~li~~l~s~~--~~v~~~~al~~L~~L~~~~~ 809 (2100)
..+- +..+|.++..|+..+ .+.. ...+..|+.+.+..+
T Consensus 1066 ~n~i---------ynlLPdil~~Ls~~~l~~~~~-~~vm~~li~~ikkde 1105 (1251)
T KOG0414|consen 1066 GNTI---------YNLLPDILSRLSNGNLEEESY-KTVMEFLIGLIKKDE 1105 (1251)
T ss_pred ccch---------hhhchHHHHhhccCcccchhh-HHHHHHHHHHhcccc
Confidence 4433 667888998888775 4445 677777887765553
No 260
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.70 E-value=47 Score=47.23 Aligned_cols=145 Identities=14% Similarity=0.200 Sum_probs=101.7
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHH
Q 000133 401 AKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAI 480 (2100)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i 480 (2100)
.+..++..+..+...+|..|.+||..+....+.. +.....-..+..-+.+....||+.|+..++.....+++.....
T Consensus 817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qy 893 (1692)
T KOG1020|consen 817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSV---LSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQY 893 (1692)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh---hcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHH
Confidence 4566778888888999999999999998775442 1111222333344556778999999999987655566655544
Q ss_pred HhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhc---CChhHHHHHHHHHHHHhcCC
Q 000133 481 TAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKN---GSANGKEIAAKTLNHLIHKS 557 (2100)
Q Consensus 481 ~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~---~~~~~~~~Aa~aL~~L~~~~ 557 (2100)
++ .+..-..+....||.++...++.+|...|+.-. .+...++++.. ....+++.+..++.+++...
T Consensus 894 Y~-----~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~------i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p 962 (1692)
T KOG1020|consen 894 YD-----QIIERILDTGVSVRKRVIKILRDICEETPDFSK------IVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTP 962 (1692)
T ss_pred HH-----HHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh------HHHHHHHHHHHhccchhHHHHHHHHHHHHHhccC
Confidence 43 466666677889999999999999987666432 23444555553 33348999999999999976
Q ss_pred CC
Q 000133 558 DT 559 (2100)
Q Consensus 558 ~~ 559 (2100)
-+
T Consensus 963 ~~ 964 (1692)
T KOG1020|consen 963 VP 964 (1692)
T ss_pred CC
Confidence 54
No 261
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=93.49 E-value=1 Score=48.24 Aligned_cols=122 Identities=19% Similarity=0.251 Sum_probs=97.9
Q ss_pred hHHHHhCCcHHHHHHhhCCCCH------HHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCC--CHHHHHHHHH
Q 000133 435 WRALQGREGIQLLISLLGLSSE------QQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG--SAKAKEDSAS 506 (2100)
Q Consensus 435 ~~~i~~~g~i~~Lv~lL~s~~~------~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~vre~A~~ 506 (2100)
...++..+|+..|+++++++.. +....+..++.+|-. +.-..+.......|...+...... +..+.+.|..
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMe-Hg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELME-HGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHh-cCcCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 3466788999999999998763 566678888888874 455556677777888888888755 5889999999
Q ss_pred HHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCC
Q 000133 507 ILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKS 557 (2100)
Q Consensus 507 aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~ 557 (2100)
.|.++...++.....+.++=-++.|+..|+.+++.++..+...+-.|-...
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA 133 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKA 133 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Confidence 999999987777777777778899999999999999998888776665443
No 262
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=93.48 E-value=1 Score=55.83 Aligned_cols=153 Identities=16% Similarity=0.150 Sum_probs=105.8
Q ss_pred HHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHH-hcCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 000133 565 LTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKI-LSSTKEETQAKSASALAGIFETRKDLRESS 643 (2100)
Q Consensus 565 L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~l-L~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~ 643 (2100)
+.+++.+.++-.|-+..-+++ ++.+.. .+.+.+..|+.+ .+++++++|++|..+|+-+|..+.
T Consensus 521 I~ell~d~ds~lRy~G~fs~a-lAy~GT---------gn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~------ 584 (926)
T COG5116 521 INELLYDKDSILRYNGVFSLA-LAYVGT---------GNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR------ 584 (926)
T ss_pred HHHHhcCchHHhhhccHHHHH-HHHhcC---------CcchhHhhhheeecccCchHHHHHHHHheeeeEecCc------
Confidence 445566666666655444444 333322 234557888886 788999999999999999997754
Q ss_pred HhcCchHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhc--C
Q 000133 644 IAVKTLWSVMKLL-DVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLIL--D 720 (2100)
Q Consensus 644 ~~~g~v~~Lv~lL-~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~--~ 720 (2100)
..++..+++| .+.+..++-..+-+|+--|++..+ ..++..|-.|+++++.=||..|+.+++.+.. +
T Consensus 585 ---~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~--------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n 653 (926)
T COG5116 585 ---DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD--------KVATDILEALMYDTNDFVRQSAMIAVGMILMQCN 653 (926)
T ss_pred ---chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc--------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcC
Confidence 3455556666 677888898999999888776532 2357778889999999999999999999873 3
Q ss_pred cHHHHHHHHcCcHHHHHHHHccCChh
Q 000133 721 SEVSEKAIAEEIILPATRVLCEGTIS 746 (2100)
Q Consensus 721 ~~~~~~~v~~~~v~~L~~ll~~~~~~ 746 (2100)
++...+ -.++++.+.++..+...+
T Consensus 654 ~~Lnp~--v~~I~k~f~~vI~~Khe~ 677 (926)
T COG5116 654 PELNPN--VKRIIKKFNRVIVDKHES 677 (926)
T ss_pred cccChh--HHHHHHHHHHHHhhhhHh
Confidence 332222 246677777777665554
No 263
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=93.05 E-value=3.5 Score=50.37 Aligned_cols=186 Identities=22% Similarity=0.247 Sum_probs=116.5
Q ss_pred hHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--CCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCC----CC
Q 000133 486 IPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVES--ADAVPALLWLLKNGSANGKEIAAKTLNHLIHKS----DT 559 (2100)
Q Consensus 486 i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~----~~ 559 (2100)
+...+..+.+.+...|+.+...|.++..+.. ....+.+ ...+..+.+.++.++.+-+..|+.++.-++-+- +.
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~-~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRY-LPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence 3445556666778899999998888875422 1222221 345678888888888777777888888777651 11
Q ss_pred -----CcHHHHHHHhhcCCcc--hHHHHHHHHHHHHhccCch-hHHHHhhhccchHHHHH--HHhcC----------CCH
Q 000133 560 -----ATISQLTALLTSDLPE--SKVYVLDALKSMLSVVSFS-DILREGSAANDAVETMI--KILSS----------TKE 619 (2100)
Q Consensus 560 -----~~i~~L~~lL~~~~~~--~~~~a~~aL~~l~~~~~~~-~~~~~~i~~~~~i~~Lv--~lL~s----------~~~ 619 (2100)
...|.|...+.++... .|..+..||+.++.+.... +-+...+. .+..+. ...+. +++
T Consensus 124 ~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~---~le~if~~~~~~~~~~~~~~~~~~~~ 200 (309)
T PF05004_consen 124 EEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME---SLESIFLLSILKSDGNAPVVAAEDDA 200 (309)
T ss_pred HHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH---HHHHHHHHHhcCcCCCcccccCCCcc
Confidence 4567788888876554 5567788999877754422 22221111 122111 11221 135
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 000133 620 ETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIF 675 (2100)
Q Consensus 620 ~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~ 675 (2100)
.+...|..+-+-|...-+...-.-.....+|.|..+|.+.+.+++..|..+|+-|.
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 67777776666666544442111222357999999999999999999999997764
No 264
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=92.82 E-value=3.2 Score=48.37 Aligned_cols=254 Identities=13% Similarity=0.051 Sum_probs=147.9
Q ss_pred hhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCC-cHHHHHHhhCCC--CHHHHHHHHHHHHHhccCCcccHHHHHh-c
Q 000133 408 LITMATNEVQEELVRALLKLCNNEGSLWRALQGRE-GIQLLISLLGLS--SEQQQECSVALLCLLSNENDDSKWAITA-A 483 (2100)
Q Consensus 408 lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g-~i~~Lv~lL~s~--~~~v~~~A~~aL~nLs~~~~~~~~~i~~-~ 483 (2100)
+++.-++-++.-|+.|+.++... ++.+..+...+ .-..++.++++. ...+|.....++..++- ++...+.+-. -
T Consensus 157 l~Q~i~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi~K~~ 234 (432)
T COG5231 157 LSQLIDFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDIDKMD 234 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence 34444566788899999998887 45555554333 346788888764 56889999999988874 5554433221 2
Q ss_pred CChHHHHHhccCC-CHHHHHHHHHHHHHHhcCCh-hhHHHHHhCCcHHHHHHHhhcC---ChhHHHHHHHHHHHHhcCCC
Q 000133 484 GGIPPLVQILESG-SAKAKEDSASILRNLCNHSE-DIRACVESADAVPALLWLLKNG---SANGKEIAAKTLNHLIHKSD 558 (2100)
Q Consensus 484 g~i~~Lv~lL~~~-~~~vre~A~~aL~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~~~---~~~~~~~Aa~aL~~L~~~~~ 558 (2100)
.-+.-|+++.+.. ...+-+-++.++.|++...+ ..-....-.|-+.+-++.|..+ +.+.+..--..=..|-....
T Consensus 235 dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k 314 (432)
T COG5231 235 DLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTK 314 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhh
Confidence 2455666666654 56667778999999987432 1112222344455556666553 33333222211111111000
Q ss_pred C-CcHHHHHH-----HhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHH-HHHHHHHHHHH
Q 000133 559 T-ATISQLTA-----LLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEE-TQAKSASALAG 631 (2100)
Q Consensus 559 ~-~~i~~L~~-----lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~-~~~~Aa~aL~~ 631 (2100)
. ..-...+. .+..+.+..+..- -..+.+ +-.-.+...++.|.+++++..+. .-.-||.=+..
T Consensus 315 ~l~~fD~Y~~ELdsg~l~wSp~H~~~dF---------Ws~N~d--~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~ 383 (432)
T COG5231 315 KLCIFDNYLNELDSGRLEWSPYHHKKDF---------WSTNLD--MLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQ 383 (432)
T ss_pred hhhHHHHHHHHHhhCcccCCCcccccCc---------hhhhHH--HHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHH
Confidence 0 00000000 0111111000000 000000 00112234578888999877666 33457888888
Q ss_pred HhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000133 632 IFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAI 674 (2100)
Q Consensus 632 L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L 674 (2100)
+.+..|+.+.-+...|+=..++.++.+++++++-.|.+++-.+
T Consensus 384 ~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~ 426 (432)
T COG5231 384 LVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTC 426 (432)
T ss_pred HHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHH
Confidence 8888899999999999999999999999999999999998765
No 265
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=92.79 E-value=0.16 Score=49.85 Aligned_cols=80 Identities=16% Similarity=0.285 Sum_probs=55.0
Q ss_pred eeeeeccchhhh---hhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCcccc
Q 000133 1982 VVIIKRGNNMKQ---SVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKSSFG 2058 (2100)
Q Consensus 1982 ~~~~~r~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2058 (2100)
+|+=.|--++++ ..+.+--|..+..|+.---.||+ ++||.|+|.|.+.+| ++-.+.|.++||..----..|
T Consensus 4 ~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd---k~nEiel~VyDk~~~~~~Pi~ 77 (109)
T cd08689 4 TITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE---KNNEEEVIVYDKGGDQPVPVG 77 (109)
T ss_pred EEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEec---CCcEEEEEEEeCCCCeeccee
Confidence 334455566666 33445678899999886666776 599999999988886 688999999998543333334
Q ss_pred eEEEEEeeE
Q 000133 2059 KVTIQIDRV 2067 (2100)
Q Consensus 2059 ~~~~~~~~~ 2067 (2100)
-.=|.|.++
T Consensus 78 llW~~~sdi 86 (109)
T cd08689 78 LLWLRLSDI 86 (109)
T ss_pred eehhhHHHH
Confidence 444444433
No 266
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.66 E-value=1.5 Score=57.59 Aligned_cols=238 Identities=14% Similarity=0.071 Sum_probs=155.4
Q ss_pred chHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHH-HhccCCcccHHHHHhcCChHHHHHhccCCC-HHHHHHHHHHHHHH
Q 000133 434 LWRALQGREGIQLLISLLGLSSEQQQECSVALLC-LLSNENDDSKWAITAAGGIPPLVQILESGS-AKAKEDSASILRNL 511 (2100)
Q Consensus 434 ~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~-nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~vre~A~~aL~~L 511 (2100)
.+...++-|+...|..+.....+..+.....+|. .+. .+..+ ....++++.+.+.... .--.-.+..++.||
T Consensus 496 ~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~--f~~~~----~~~v~~~~~s~~~~d~~~~en~E~L~altnL 569 (748)
T KOG4151|consen 496 ERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKID--FPGER----SYEVVKPLDSALHNDEKGLENFEALEALTNL 569 (748)
T ss_pred hcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcC--CCCCc----hhhhhhhhcchhhhhHHHHHHHHHHHHhhcc
Confidence 3445567789999999888777888877777777 332 12111 1124555655554332 12223588899999
Q ss_pred hcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhcc
Q 000133 512 CNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVV 591 (2100)
Q Consensus 512 ~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~ 591 (2100)
+..++..|..+.++-+++.+-.++-..++..+..+...+.||..++
T Consensus 570 as~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~---------------------------------- 615 (748)
T KOG4151|consen 570 ASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSP---------------------------------- 615 (748)
T ss_pred cCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhH----------------------------------
Confidence 9998888888888888877777777777888888888888885522
Q ss_pred CchhHHHHhhhc-cchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHH-HHHhcCchHHHHHhhcCCCHHHHHHHHH
Q 000133 592 SFSDILREGSAA-NDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRE-SSIAVKTLWSVMKLLDVGSECILVEASR 669 (2100)
Q Consensus 592 ~~~~~~~~~i~~-~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~-~~~~~g~v~~Lv~lL~~~~~~v~~~aa~ 669 (2100)
.++.+.+.+ ..+++....++....+....+++.++..|+......+. ..........++.++.+.+..++.....
T Consensus 616 ---~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~ 692 (748)
T KOG4151|consen 616 ---LLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLV 692 (748)
T ss_pred ---HHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhh
Confidence 112222222 55677777777778888999999999888877666665 4444567888899999999999999999
Q ss_pred HHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHH
Q 000133 670 CLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALA 715 (2100)
Q Consensus 670 aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~ 715 (2100)
.+.++..... .--..+.+...++.+...-+-.....++.++.+|.
T Consensus 693 ~~ln~~~~~~-ei~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~l~ 737 (748)
T KOG4151|consen 693 IILNLFEALF-EIAEKIFETEVMELLSGLQKLNRAPKREDAAPCLS 737 (748)
T ss_pred hhhhHHHHHH-HHHHHhccchHHHHHHHHHHhhhhhhhhhhhhHHH
Confidence 9999643321 11111334444444443322233344555554444
No 267
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.68 E-value=67 Score=43.91 Aligned_cols=609 Identities=13% Similarity=0.080 Sum_probs=295.4
Q ss_pred CCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhhcCCC--HHHHHHHHHHHHHHhccCCCCc--cccc-------
Q 000133 66 GSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSS--AEGQIAAAKTIYAVSQGGAKDY--VGSK------- 134 (2100)
Q Consensus 66 ~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~s~~--~~~~~~A~~aL~~Ls~~~~~~~--~~~~------- 134 (2100)
.++..|..|-.-|..+-|.+ |-++.++..+.+++ ..+|.+|+.=|+|.-.-.-+++ .|++
T Consensus 16 ~d~~~R~~AE~~L~q~~K~p---------gFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~d 86 (1010)
T KOG1991|consen 16 SDAKERKAAEQQLNQLEKQP---------GFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEED 86 (1010)
T ss_pred CChHHHHHHHHHHHHhhcCC---------cHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChHH
Confidence 34667666666677665444 66777777776554 3458888888888665222222 1211
Q ss_pred -chhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhc-cCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHH
Q 000133 135 -IFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLS-TSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACM 212 (2100)
Q Consensus 135 -~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~-~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L 212 (2100)
..+.+. +++.+-. .+..++.....+|.++- .+.++.|. |.++....+|++++......+.-+|..|
T Consensus 87 k~~iren----Il~~iv~---~p~~iRvql~~~l~~Ii~~D~p~~Wp-----~l~d~i~~~Lqs~~~~~vy~aLl~l~qL 154 (1010)
T KOG1991|consen 87 KAVIREN----ILETIVQ---VPELIRVQLTACLNTIIKADYPEQWP-----GLLDKIKNLLQSQDANHVYGALLCLYQL 154 (1010)
T ss_pred HHHHHHH----HHHHHHh---CchHHHHHHHHHHHHHHhcCCcccch-----hHHHHHHHHhcCcchhhHHHHHHHHHHH
Confidence 122222 3333322 13345655666665543 45567777 5577899999999999999999999988
Q ss_pred hhcCc----chh---hHHhhhchHHHHH----HHhcCCCC--HHHHHHHHHHHHHhhcCChHhHHHHHhCCChHH----H
Q 000133 213 MEEDV----SVC---SRVLAADATKQLL----KLLGSGNE--ASVRAEAAGALKSLSDHCKDARREIAGSNGIPA----M 275 (2100)
Q Consensus 213 ~~~~~----~~~---~~i~~~g~i~~Lv----~lL~~~~~--~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~----L 275 (2100)
+...+ +.+ ..++ ....|.+. +++..++. .++....+.+.+.++.. +.-..+.+.+-+.. .
T Consensus 155 ~k~ye~k~~eeR~~l~~~v-~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~--~LP~~L~~~~~f~~W~~l~ 231 (1010)
T KOG1991|consen 155 FKTYEWKKDEERQPLGEAV-EELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYY--ELPLELSAPETFTSWMELF 231 (1010)
T ss_pred HHHHhhccccccccHHHHH-HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHH--hCCHHhhCchhHHHHHHHH
Confidence 84322 111 1222 22334433 34444432 46777777777776653 22233333343332 2
Q ss_pred HHhhcCCCc-chh-------hhhhhHHHHHHHHHHHHHhhC--CCcchhhhccccccCCCChhhhhh--hhhhhHHHHHH
Q 000133 276 INATIAPSK-EFM-------QGEYAQALQENAMCALANISG--GLSNVISSLGQSLESCSSPAQVAD--TLGALASALMI 343 (2100)
Q Consensus 276 v~ll~~~~~-e~~-------~~~~~~~l~~~a~~aL~nl~~--~~~~~i~~l~~~~~~~~~~~~~~~--~~gal~~ll~~ 343 (2100)
+..+..+-. |.+ +.-..-+...||...|..+.. |...... -++..+...... ..|.++-.+..
T Consensus 232 l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~-----~~y~~Fa~~f~~n~~~~ile~~lk~ 306 (1010)
T KOG1991|consen 232 LSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVV-----PEYKEFAQMFLKNFAQGILEVFLKI 306 (1010)
T ss_pred HHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccc-----hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333321 111 111223466777777665544 2111111 001111111111 12333333333
Q ss_pred hccccCCCCCCCchhhHHHHHhh-------------cCCCC--------------------------ChHHHHH------
Q 000133 344 YDSKAESTKPSDPLIVEQTLVNQ-------------FKPRL--------------------------PFLVQER------ 378 (2100)
Q Consensus 344 l~~~~~~~~~~~~~~i~~~Lv~l-------------L~~~~--------------------------~~~vq~~------ 378 (2100)
++.... ..+-+..++-.+... ++++- .+.+|+.
T Consensus 307 l~~~~~--~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed 384 (1010)
T KOG1991|consen 307 LEQWRQ--QLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFED 384 (1010)
T ss_pred HHHHHh--cccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcc
Confidence 321000 111111222222211 11111 1111110
Q ss_pred -------HHHHHHHHhCCCccchhhhccccHHHHHHhhc------C--CCHHHHHHHHHHHHHhhcc---CccchHHHHh
Q 000133 379 -------TIEALASLYGNPLLSIKLENSEAKRLLVGLIT------M--ATNEVQEELVRALLKLCNN---EGSLWRALQG 440 (2100)
Q Consensus 379 -------aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~------~--~~~~v~~~A~~aL~~L~~~---~~~~~~~i~~ 440 (2100)
+...+-.+. ...-+.. =.+.++.++..+. . .++.-...|.+.+++|+.- ...++ ...+
T Consensus 385 ~~sp~~Aa~~~l~~~~-~KR~ke~--l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~-~~mE 460 (1010)
T KOG1991|consen 385 GYSPDTAALDFLTTLV-SKRGKET--LPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYK-SQME 460 (1010)
T ss_pred cCCCcHHHHHHHHHHH-Hhcchhh--hhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchH-HHHH
Confidence 000000000 0000000 1134555666665 1 3566778888888888842 11121 2222
Q ss_pred CCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhcc-CCCHHHHHHHHHHHHHHhcCChhhH
Q 000133 441 REGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILE-SGSAKAKEDSASILRNLCNHSEDIR 519 (2100)
Q Consensus 441 ~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~vre~A~~aL~~L~~~~~~~~ 519 (2100)
.=.++.+...++++..-+|..|||.+..++... -...-.-..+.....+.|. +.+-.+|-.|+-||..+-.+.+...
T Consensus 461 ~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~d--f~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~ 538 (1010)
T KOG1991|consen 461 YFLVNHVFPEFQSPYGYLRARACWVLSQFSSID--FKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQAD 538 (1010)
T ss_pred HHHHHHhhHhhcCchhHHHHHHHHHHHHHHhcc--CCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhh
Confidence 234567777788888899999999999998321 1111122235566667776 6688899999999999988665554
Q ss_pred HHHHh--CCcHHHHHHHhhcCChhHHHHHH-HHHHHHhcCCCC-------CcHHHHHHHhhc---CCcchHHHHHHHHHH
Q 000133 520 ACVES--ADAVPALLWLLKNGSANGKEIAA-KTLNHLIHKSDT-------ATISQLTALLTS---DLPESKVYVLDALKS 586 (2100)
Q Consensus 520 ~~i~~--~g~i~~Lv~lL~~~~~~~~~~Aa-~aL~~L~~~~~~-------~~i~~L~~lL~~---~~~~~~~~a~~aL~~ 586 (2100)
..+.. -+.+..|+.+.+.-..+...... ..++..+..-.| ........++.+ +++.....+..|.|.
T Consensus 539 e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~Gi 618 (1010)
T KOG1991|consen 539 EKVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGI 618 (1010)
T ss_pred hhHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHH
Confidence 44432 12333444444432211111111 111111111001 112233344442 233333333334333
Q ss_pred HHh-------ccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCC
Q 000133 587 MLS-------VVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVG 659 (2100)
Q Consensus 587 l~~-------~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~ 659 (2100)
|-. +.+.+++.+.. ..-.+|.+-..|++.-.+.-+.+...+.++....++.--. .=|..+.+.+.+.+.
T Consensus 619 L~Ti~Til~s~e~~p~vl~~l--e~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~--mW~ll~li~e~~~~~ 694 (1010)
T KOG1991|consen 619 LRTISTILLSLENHPEVLKQL--EPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPI--MWGLLELILEVFQDD 694 (1010)
T ss_pred HHHHHHHHHHHhccHHHHHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHH--HHHHHHHHHHHHhhh
Confidence 222 34556544432 1222555555677777777777777777666554433221 225677777777777
Q ss_pred CHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHH----HHhCC--CCHHHHHHHHHHHHHHh
Q 000133 660 SECILVEASRCLAAIFLSVRENREVAAVARDALSPLV----VLAGS--PVLEVAEQATCALANLI 718 (2100)
Q Consensus 660 ~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv----~ll~~--~~~evr~~aa~aL~~L~ 718 (2100)
....-....-++-|.....+. ...-.......+. +.+.+ ...+-.+.|+..+..++
T Consensus 695 ~~dyf~d~~~~l~N~vt~g~~---~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~ii 756 (1010)
T KOG1991|consen 695 GIDYFTDMMPALHNYVTYGTP---SLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVII 756 (1010)
T ss_pred hHHHHHHHHHHHhhheeeCch---hhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 777778888888877554322 1011122233333 34444 23333466777777776
No 268
>PLN02228 Phosphoinositide phospholipase C
Probab=91.52 E-value=0.27 Score=63.62 Aligned_cols=90 Identities=19% Similarity=0.348 Sum_probs=65.3
Q ss_pred CCCceeeeeccchh-----hhh---hCCCcceEEE-ecC---CCCCccccccccCCCccc-cccceeccccCCCCCeEEE
Q 000133 1978 PGTLVVIIKRGNNM-----KQS---VGNPSVYCKL-TLG---NTPPRQTKIVSTGPNPEW-EESFAWSFEIPPKGQKLHI 2044 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~-----~~~---~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 2044 (2100)
+..|+|+|+-+..+ ... +....-+..+ -+| +...++||+++++-+|.| ++.|+|.+..|. =-.|.+
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pE-LA~lRf 508 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPE-LALLWF 508 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCc-eeEEEE
Confidence 45789999988654 111 2222222222 234 555578999999999999 999999988644 348999
Q ss_pred EeecCCccCCccc-ceEEEEEeeEE
Q 000133 2045 SCKNKSKMGKSSF-GKVTIQIDRVV 2068 (2100)
Q Consensus 2045 ~~~~~~~~~~~~~-~~~~~~~~~~~ 2068 (2100)
.|++.+.++++.| |..+|+++...
T Consensus 509 ~V~D~d~~~~d~figq~~lPv~~Lr 533 (567)
T PLN02228 509 KVQDYDNDTQNDFAGQTCLPLPELK 533 (567)
T ss_pred EEEeCCCCCCCCEEEEEEcchhHhh
Confidence 9999988887777 99999999873
No 269
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=91.40 E-value=3.3 Score=47.97 Aligned_cols=144 Identities=15% Similarity=0.136 Sum_probs=102.0
Q ss_pred HHHHHHHhhcCCchhhHHHHhhhcchhHHHHHHHhhcC----ChhhHHHHHHHHHHHhcC--cchHHHHHhhcChHHHHH
Q 000133 1292 AIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNC----SMELKGDAAELCGVLFGN--TRIRSTVAAARCVEPLVS 1365 (2100)
Q Consensus 1292 A~~aL~~La~~~~~~~~~~~~v~~gal~~L~~lL~~~~----~~~~~~~a~~~L~~L~~~--~~~r~~~~~~~~i~~Lv~ 1365 (2100)
|+..|--+|++.+.|..+ +++.+.-.|+.+|.... -+.+|-....+++.+... .++....-.+..+|.-+.
T Consensus 70 aLaLlQ~vAshpetr~~F---l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr 146 (262)
T PF04078_consen 70 ALALLQCVASHPETRMPF---LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLR 146 (262)
T ss_dssp HHHHHHHHHH-TTTHHHH---HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHcChHHHHHH---HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHH
Confidence 777777889999999888 57888888888886542 245777888888888874 455556677889999999
Q ss_pred HHhcCCchHHHHHHHHHHHhcccHHHHHHHHh--------cCCHHHHH-HhhcCCChhHHHHHHHHHHHhhcCCchhhHH
Q 000133 1366 LLVTEFSPAQHSVVRALDKLVDDEQLAELVAA--------HGAVIPLV-GLLYGRNYMLHEAISRALVKLGKDRPSCKLE 1436 (2100)
Q Consensus 1366 lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~--------~g~i~~L~-~lL~~~~~~vr~~A~~aL~~La~~~~~~k~~ 1436 (2100)
.++.+++-.+.-|...++++..++....-+.. ..++..++ .+.+++++++-+..+.|...|+.+ +..++.
T Consensus 147 ~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn-prar~a 225 (262)
T PF04078_consen 147 IMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN-PRAREA 225 (262)
T ss_dssp HHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTS-TTHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccC-HHHHHH
Confidence 99999999999999999998854433322211 11233333 344588999999999999999988 577776
Q ss_pred HHh
Q 000133 1437 MVK 1439 (2100)
Q Consensus 1437 i~~ 1439 (2100)
+..
T Consensus 226 L~~ 228 (262)
T PF04078_consen 226 LRQ 228 (262)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 270
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=91.39 E-value=89 Score=44.74 Aligned_cols=141 Identities=18% Similarity=0.220 Sum_probs=94.5
Q ss_pred CCchHHHHHHHhcCCHHHHHHHHHHHHhhhccch-h-hHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCc
Q 000133 53 SQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENE-L-RVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDY 130 (2100)
Q Consensus 53 ~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~-~-~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~ 130 (2100)
.+++..++..|+++...+|..|.++|..+..-++ . ...-++.|.. .-+.+.+..+|++|+..++..-
T Consensus 815 D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh----~R~~DssasVREAaldLvGrfv------- 883 (1692)
T KOG1020|consen 815 DPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVH----GRLNDSSASVREAALDLVGRFV------- 883 (1692)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHH----HhhccchhHHHHHHHHHHhhhh-------
Confidence 5788899999998888999999999999885444 1 2222233323 2334567788998888777432
Q ss_pred ccccchhccCChHHHHHHhhcc-CCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHcc--CCH-HHHHHHH
Q 000133 131 VGSKIFSTEGVVPVLWEQLKNG-LKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTL--GQS-STQAHVC 206 (2100)
Q Consensus 131 ~~~~~~~~~g~vp~L~~lL~~~-~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s--~~~-~v~~~a~ 206 (2100)
+.....++...+++..+ .+.+-.|+..+...++.+|...+.... + +....++++. +.+ .++.-++
T Consensus 884 -----l~~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~-i-----~~~cakmlrRv~DEEg~I~kLv~ 952 (1692)
T KOG1020|consen 884 -----LSIPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSK-I-----VDMCAKMLRRVNDEEGNIKKLVR 952 (1692)
T ss_pred -----hccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh-H-----HHHHHHHHHHhccchhHHHHHHH
Confidence 22334566777777554 333444899999999999987776544 2 3456666653 223 3788888
Q ss_pred HHHHHHhhc
Q 000133 207 FLLACMMEE 215 (2100)
Q Consensus 207 ~~L~~L~~~ 215 (2100)
.++.++-..
T Consensus 953 etf~klWF~ 961 (1692)
T KOG1020|consen 953 ETFLKLWFT 961 (1692)
T ss_pred HHHHHHhcc
Confidence 888777644
No 271
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=90.51 E-value=6.3 Score=44.11 Aligned_cols=95 Identities=15% Similarity=0.177 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcH-HHHHH
Q 000133 455 SEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAV-PALLW 533 (2100)
Q Consensus 455 ~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i-~~Lv~ 533 (2100)
++.+|..++.+++.|+...+.... .-+|.+...|.++++.+|..|..+|..|... +-.+ -.|-+ ..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik----~k~~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIK----VKGQLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-Ccee----ehhhhhHHHHH
Confidence 467899999999999876654322 2478899999999999999999999999864 2222 12333 77888
Q ss_pred HhhcCChhHHHHHHHHHHHHhcCCCC
Q 000133 534 LLKNGSANGKEIAAKTLNHLIHKSDT 559 (2100)
Q Consensus 534 lL~~~~~~~~~~Aa~aL~~L~~~~~~ 559 (2100)
++.+.++.++..|...+..+.....+
T Consensus 71 ~l~D~~~~Ir~~A~~~~~e~~~~~~~ 96 (178)
T PF12717_consen 71 LLVDENPEIRSLARSFFSELLKKRNP 96 (178)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHhccc
Confidence 89999999999999999999876333
No 272
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.51 E-value=93 Score=43.45 Aligned_cols=515 Identities=14% Similarity=0.125 Sum_probs=237.8
Q ss_pred hcChHHHHHHHhcCCchHHHHHHHHHHHhc--ccHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCC-chh
Q 000133 1357 ARCVEPLVSLLVTEFSPAQHSVVRALDKLV--DDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDR-PSC 1433 (2100)
Q Consensus 1357 ~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~--~~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~-~~~ 1433 (2100)
+.+++.++.+|.+++...+..++.-+.... +.+. ...++..++.|.++.+.++|++...|-..+--.. +.+
T Consensus 540 s~~~~ii~~ll~s~t~teV~E~Idfl~~c~~F~I~g------ae~~irkMl~LVWskd~~i~e~v~~ayk~l~~~~~~n~ 613 (1251)
T KOG0414|consen 540 SEAIPIISQLLFSKTTTEVKEAIDFLVRCKQFGIDG------AEFGIRKMLPLVWSKDKEIREAVENAYKQLYFRPDGNS 613 (1251)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCc------HHHHHHHHhhhhhCCCccHHHHHHHHHHHHhccCCCCc
Confidence 446677777777777777777766554332 2111 1225889999999999999998888887764432 122
Q ss_pred hHHHHhcCcHHHHHHHhccCChhHHHHHHHHHHHHHhccCCcccccccCchHHHHHHhccCC-CCchhH-hHHHHHHHHh
Q 000133 1434 KLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSE-FGPDGQ-HSALQVLVNI 1511 (2100)
Q Consensus 1434 k~~i~~~~~i~~lv~~L~~~~~~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~-~~~~~~-~~A~~~L~nL 1511 (2100)
+.. .....++.+.+++...+..-....-+++++|.....+. ..++..|....+..- ..+..| +.++..|+.+
T Consensus 614 ~~~-e~~~ia~NL~~l~~~~s~~d~~slE~vl~~lv~~~~Id-----~~Vi~~Lw~~ftlq~~~~~~~q~~~sl~iL~M~ 687 (1251)
T KOG0414|consen 614 KAS-EASSIAQNLSKLLIDASIGDLTSLEEVLCELVARGYID-----AAVINKLWEIFTLQKKGTTNEQSRGSLIILGMA 687 (1251)
T ss_pred hhh-HHHHHHHHHHHHHhcccccchhhHHHHHHHHHhCCCcc-----HHHHHHHHHHHHHHhccCchhhhccceeehhhh
Confidence 211 11334556666665544333444445555565533222 223444444431111 123333 3455555544
Q ss_pred hcCCCcccccccccCCChHhhhhccCCCCHHHHHHHHHHHHHhhccccc----cc-cc--cc-cCchHHHHHHhc-----
Q 000133 1512 LEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQL----QK-DP--VT-QQVIGPLIRVLG----- 1578 (2100)
Q Consensus 1512 ~~~~~~~~~~~~~~~~~l~~Lv~~L~~~~~~vq~~a~~aL~~l~~~~~~----~~-~l--~~-~g~i~~Lv~lL~----- 1578 (2100)
+...... ....++.|++. .-+.+.....++..+++++...-. +. .+ -. +-..+.|-.++.
T Consensus 688 s~s~~~I------v~~~~~~lv~i-glg~p~l~~~~L~~~s~i~~~r~~~~~~~r~~f~~~~~~~L~k~L~~l~~~~~~~ 760 (1251)
T KOG0414|consen 688 SRSKPSI------VLANLDLLVQI-GLGEPRLAVDVLARYSNIVDPRKLEDAYSRPKFNLEQEEVLFKILEKLLFFEFMK 760 (1251)
T ss_pred hccChhh------hhhhhHHHHHh-ccCcHHHHHHHHHHHHHhhcccccchhhccccccCchHHHHHHHHHHHHhhccCC
Confidence 3221111 01112222221 234466667777777777652111 11 11 11 112244444442
Q ss_pred c--CCHHHHHHHHHHHHHhhcCChhHHHhccChHHHHHHhcc--------cCCCchHHHHHHHHHHHHh-hhcccchhhh
Q 000133 1579 S--GIHILQQRAVKALVSIALTWPNEIAKEGGVTELSKIILQ--------ADPSLPHALWESAASVLSS-ILQFSSEFYL 1647 (2100)
Q Consensus 1579 s--~~~~vr~~Al~AL~~Ls~~~~n~l~~~G~i~~Ll~lL~~--------~~~~~~~~l~e~a~~~L~~-i~~~~~~~~~ 1647 (2100)
. .-..+.+.|+.++..++..|+- +..-++..+.+..+. ..+.........=..++.. +. -+..
T Consensus 761 ~d~~~~~~~e~ais~Iy~is~~Pe~--la~~li~~~~~~~f~~~~~E~~~~~~d~~k~~~ltp~~~l~~~li----f~vg 834 (1251)
T KOG0414|consen 761 ADDDWFGVAEVAISAIYSISMLPEV--LATQLIRKLLKQDFESLECEADTITDDPRKSDALTPERVLKDSLI----FIVG 834 (1251)
T ss_pred cchHHHHHHHHHHHHHHHHhcChHH--HHHHHHHHHHHHHhhhhhhhhccccCCcccccccCHHHHHHHhHH----HHHH
Confidence 1 2346889999999999998754 222222333333222 0111111100000111111 00 0111
Q ss_pred cccHHHHHHHhhcCCHH-HHHHHHHHHHHhccCChhhHH--HHHHcc-cHHHHHHHHhccCcHHHHHHHHHHHhcCchhh
Q 000133 1648 EVPVAVLVRLLRSGSEG-TVIGSLNALLVLESDDGTSAE--AMAESG-AIEALLELLRSHQCEETAARLLEVLLNNGKIR 1723 (2100)
Q Consensus 1648 ~~~v~~Lv~ll~~~~~~-~~~~a~~aL~~L~~~~~~~~~--~i~~~g-~i~~Li~lL~s~~~~~~a~~lL~~L~~~~~~~ 1723 (2100)
+-++..++.+=..-.-. .|......+- +..+..... ..++.+ +...=..+..+. .+..-..++..++..+=+-
T Consensus 835 ~vAikqlvyiE~~i~~~~kRr~~~~~~~--e~k~~N~~e~~s~t~~~~~~~~e~dlig~t-seDd~~d~i~~icE~eLl~ 911 (1251)
T KOG0414|consen 835 DVAIKQLVYIEVCISKEFKRRKIKTELE--EKKDKNQRENLSNTQRETQFTVELDLIGGT-SEDDLADLISGICEKELLY 911 (1251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcccCchhhhccccccccCCccccccCCC-cchhHHHHHHHHHHHHHhc
Confidence 12344443332221111 1222222221 111111110 011111 111111122111 2333344555555433111
Q ss_pred h-hhhchhhhhhh-hhhccC----hhhHHHHHHHHHHHHhcchhhhhhHHHhhhhhchHHHHHHhhhcCCCHHHHHHHHH
Q 000133 1724 E-SKATKSAILPL-SQYLLD----PQTQAQQARLLATLALGDLFQNEGLARSADAVSACRALVNVLEEQPTEEMKVVAIC 1797 (2100)
Q Consensus 1724 ~-~~~~~~~i~~L-~~~l~~----~~~~~~~~~~~A~~~l~~~~~~~~l~~~~~~~~a~~~Lv~lL~~~~~~~~~~~A~~ 1797 (2100)
+ .-+-..+. |+ +.+-.+ ++...+.++.+|++.+--+. ..+. .+.++.|++.|+-.+++.+|-+++-
T Consensus 912 gek~lLg~f~-piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS--a~fc-----es~l~llftimeksp~p~IRsN~Vv 983 (1251)
T KOG0414|consen 912 GEKSLLGRFA-PIVVEGCRNPGLFSDPELQAAATLALGKLMCIS--AEFC-----ESHLPLLFTIMEKSPSPRIRSNLVV 983 (1251)
T ss_pred ChHHHHHHHH-HHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh--HHHH-----HHHHHHHHHHHhcCCCceeeecchh
Confidence 1 10111111 22 222211 12344555445544433222 1122 2458899999997779999999999
Q ss_pred HHHHhhcCCcccHHHHHhhCCHHHHHHHhCCCCccchHHHHHHHHHHhcccch--hhhcchhhHHHH-------HHHHhh
Q 000133 1798 ALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFVKLLFSNHTI--QEYASSETVRAI-------TAAIEK 1868 (2100)
Q Consensus 1798 aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~s~~~~~~~~aa~~l~~L~s~~~~--~~~~~~~~~~~~-------~~l~~~ 1868 (2100)
++..|+..-++-... ..+.|...|+..++.++..|-..|.+|..|.-+ +++++. ..+-+ .++...
T Consensus 984 algDlav~fpnlie~-----~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~e-MA~cl~D~~~~IsdlAk~ 1057 (1251)
T KOG0414|consen 984 ALGDLAVRFPNLIEP-----WTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSE-MALCLEDPNAEISDLAKS 1057 (1251)
T ss_pred eccchhhhcccccch-----hhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHH-HHHHhcCCcHHHHHHHHH
Confidence 999999544443322 244566677888888999999999999877754 666632 21111 111111
Q ss_pred ccccCCCCcHHHHHHHhhhhccCCCccccCCCccC--hHHHHHhhccC
Q 000133 1869 ELWATGTVNEEYLKALNALFNNFPRLRATEPATLS--IPHLVTALKTG 1914 (2100)
Q Consensus 1869 ~~~~~~~~~~~~c~~l~~~~~~~h~g~cs~~~tfc--i~~Lv~~L~~~ 1914 (2100)
-|--........-.=|=.|.+.+..| --++.+|| -+.|++.++..
T Consensus 1058 FF~Els~k~n~iynlLPdil~~Ls~~-~l~~~~~~~vm~~li~~ikkd 1104 (1251)
T KOG0414|consen 1058 FFKELSSKGNTIYNLLPDILSRLSNG-NLEEESYKTVMEFLIGLIKKD 1104 (1251)
T ss_pred HHHHhhhcccchhhhchHHHHhhccC-cccchhhHHHHHHHHHHhccc
Confidence 11001000011111124556666666 33677888 77888888765
No 273
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=90.41 E-value=9.1 Score=47.45 Aligned_cols=186 Identities=19% Similarity=0.224 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHhhcCHHHHhhhcccCcHHHHHHHHhcCC--HHHHHHHHHHHHHhhcchhhhhhhhhcCChHHHHHhhcc
Q 000133 1206 TEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGG--RGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNT 1283 (2100)
Q Consensus 1206 ~~~~~~~ll~~l~~~~~~~~~~~~~~al~~Li~~L~~~~--~~~r~~Aa~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~ 1283 (2100)
|...+..++..+..+..+- ...+++..|..++..++ .|.++++- .+-.+++.|.+
T Consensus 284 ~~~~v~~~l~~~~g~e~a~---~~k~alsel~~m~~e~sfsvWeq~f~~--------------------iL~~l~EvL~d 340 (516)
T KOG2956|consen 284 QSALVADLLKEISGSERAS---ERKEALSELPKMLCEGSFSVWEQHFAE--------------------ILLLLLEVLSD 340 (516)
T ss_pred hhHHHHHHHHhccCccchh---HHHHHHHHHHHHHHccchhHHHHHHHH--------------------HHHHHHHHHcc
Confidence 4445555555554432221 14578888888888774 46666662 24556678877
Q ss_pred -CChhhHHHHHHHHHHhhcCCchhhHHHHhhhcchhHHHHHHHhhc--CChhhHHHH-HHHHHHHhcCcchHHHHHhhcC
Q 000133 1284 -GLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSN--CSMELKGDA-AELCGVLFGNTRIRSTVAAARC 1359 (2100)
Q Consensus 1284 -~~~~~~~~A~~aL~~La~~~~~~~~~~~~v~~gal~~L~~lL~~~--~~~~~~~~a-~~~L~~L~~~~~~r~~~~~~~~ 1359 (2100)
.++..++.|+..|..++.....+- ...+--++.+.|... +++++...| ..++..+++.. ...+
T Consensus 341 ~~~~~~k~laLrvL~~ml~~Q~~~l------~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~-------P~~~ 407 (516)
T KOG2956|consen 341 SEDEIIKKLALRVLREMLTNQPARL------FDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHL-------PLQC 407 (516)
T ss_pred chhhHHHHHHHHHHHHHHHhchHhh------hchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhC-------chhH
Confidence 555566669999999996554442 122333344444332 234444444 45555554433 2335
Q ss_pred hHHHHHHHhcCCchHHHHHHHHHHHhccc---HHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcC
Q 000133 1360 VEPLVSLLVTEFSPAQHSVVRALDKLVDD---EQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKD 1429 (2100)
Q Consensus 1360 i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~---~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~ 1429 (2100)
|..+..++...|+..-..++..+.+++.. +..-. .-.++.|.+++..++.+..||+.|+-||..+..-
T Consensus 408 I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~--ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~ 478 (516)
T KOG2956|consen 408 IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLN--LLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNR 478 (516)
T ss_pred HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHH--hhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHH
Confidence 55666667677777667777788888842 22211 2357889999999999999999999999887644
No 274
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=90.30 E-value=6.8 Score=42.20 Aligned_cols=116 Identities=17% Similarity=0.231 Sum_probs=90.6
Q ss_pred HHHHhcCCHHHHHHhHccCC------HHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCC-CHHHHHHHHHH
Q 000133 179 AATVQAGGIDILVKLLTLGQ------SSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGN-EASVRAEAAGA 251 (2100)
Q Consensus 179 ~~i~~~g~v~~Lv~lL~s~~------~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~v~~~Aa~a 251 (2100)
.+.+..||++.|++++.++. .+....+..++..|+.. +-..-...+...+...+..+.... |..+...|...
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeH-g~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEH-GIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhc-CcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 45778899999999999877 36778888888888764 334556677778888888888655 67899999999
Q ss_pred HHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHH
Q 000133 252 LKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALA 304 (2100)
Q Consensus 252 L~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~ 304 (2100)
|.++...++..-..+.+.=-++.|+..|+.++ +.+|.++..-+-
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~---------~~iq~naiaLin 127 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSN---------QEIQTNAIALIN 127 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCC---------HHHHHHHHHHHH
Confidence 99999977666666767777899999998765 677777765443
No 275
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.22 E-value=5.4 Score=51.47 Aligned_cols=104 Identities=15% Similarity=0.040 Sum_probs=77.4
Q ss_pred chhHHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHhhcChHHHHHHHhcCCchHHHHHHHHHHHhcccHHHHHHH
Q 000133 1316 NAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELV 1395 (2100)
Q Consensus 1316 gal~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~~~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~ 1395 (2100)
|....|++-..+ ++..++-.+..++..+..+..-+.+..-.+....+...+.+..+.+|..|+-+|.++-+++..-
T Consensus 85 ~~f~hlLRg~Es-kdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de--- 160 (892)
T KOG2025|consen 85 GTFYHLLRGTES-KDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE--- 160 (892)
T ss_pred HHHHHHHhcccC-cchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC---
Confidence 444455554444 5778999999999999886554455556667788888899999999999999999998422111
Q ss_pred HhcCCHHHHHHhhc-CCChhHHHHHHHHHH
Q 000133 1396 AAHGAVIPLVGLLY-GRNYMLHEAISRALV 1424 (2100)
Q Consensus 1396 ~~~g~i~~L~~lL~-~~~~~vr~~A~~aL~ 1424 (2100)
+..++..+..+++ +++++||++|+..+.
T Consensus 161 -e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 161 -ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred -cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 2446778888887 899999999875543
No 276
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=89.53 E-value=0.58 Score=63.29 Aligned_cols=110 Identities=21% Similarity=0.326 Sum_probs=87.1
Q ss_pred HHHHHHHhhcCCCceeeeeccchhhhhh--CCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEE
Q 000133 1968 EKAEFLLQCLPGTLVVIIKRGNNMKQSV--GNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHIS 2045 (2100)
Q Consensus 1968 ~~a~~~le~i~~~~~~~~~r~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2045 (2100)
=....|++.- |-|++.+.-+.++.-.= |-+.-|+.|-+-+-.-+.|||++++.||.|+|+|+=-+. ....+-+.|-
T Consensus 1030 l~~~emv~ns-G~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~-~r~~D~~~i~ 1107 (1227)
T COG5038 1030 LPPVEMVENS-GYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVL-NRVKDVLTIN 1107 (1227)
T ss_pred cCcceeeccc-CcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeee-ccccceEEEE
Confidence 3556778877 99999999998886542 224578888886666999999999999999999987666 4677788888
Q ss_pred eecCCcc-CCcccceEEEEEeeEEeecccccceee
Q 000133 2046 CKNKSKM-GKSSFGKVTIQIDRVVMLGAVAGEYTL 2079 (2100)
Q Consensus 2046 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2079 (2100)
|++-+.- .++.+|.+.|.+.++--+|.|+-.--|
T Consensus 1108 v~Dwd~~~knd~lg~~~idL~~l~~~~~~n~~i~l 1142 (1227)
T COG5038 1108 VNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPL 1142 (1227)
T ss_pred EeecccCCCccccccccccHhhcCcCCccceeeec
Confidence 8885544 556679999999999989988766555
No 277
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=89.47 E-value=0.39 Score=36.40 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=25.8
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhhcC
Q 000133 1401 VIPLVGLLYGRNYMLHEAISRALVKLGKD 1429 (2100)
Q Consensus 1401 i~~L~~lL~~~~~~vr~~A~~aL~~La~~ 1429 (2100)
+|.++++++|++++||..|+.+|+.+++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999999764
No 278
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=89.43 E-value=18 Score=40.54 Aligned_cols=89 Identities=19% Similarity=0.285 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC----CCcHHHHHHHhhcC
Q 000133 497 SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD----TATISQLTALLTSD 572 (2100)
Q Consensus 497 ~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~----~~~i~~L~~lL~~~ 572 (2100)
++.+|.++..+++.|+..-+..- +..+|.+...|+++++.+|+.|..+|.+|...+- +..+..++.++.|+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~ 75 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDE 75 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCC
Confidence 47889999999999997533322 3467899999999999999999999999987552 22336777889999
Q ss_pred CcchHHHHHHHHHHHHhc
Q 000133 573 LPESKVYVLDALKSMLSV 590 (2100)
Q Consensus 573 ~~~~~~~a~~aL~~l~~~ 590 (2100)
+++++..|..++..+...
T Consensus 76 ~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 76 NPEIRSLARSFFSELLKK 93 (178)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999998877654
No 279
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=89.22 E-value=0.31 Score=62.03 Aligned_cols=82 Identities=22% Similarity=0.382 Sum_probs=60.8
Q ss_pred ceEEEecCCCCC----ccccccccCCCccccccceeccccC------------CCCCeE--EEEeec-CCcc-CCcccce
Q 000133 2000 VYCKLTLGNTPP----RQTKIVSTGPNPEWEESFAWSFEIP------------PKGQKL--HISCKN-KSKM-GKSSFGK 2059 (2100)
Q Consensus 2000 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~--~~~~~~-~~~~-~~~~~~~ 2059 (2100)
.|+..+.+ |+. ++||+.+++.+|+|+|-|.|....+ -.++|+ -+..|+ -+.+ ++.-+|.
T Consensus 153 p~~~v~~~-g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGe 231 (800)
T KOG2059|consen 153 PFARVTLC-GPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGE 231 (800)
T ss_pred cceEEeec-ccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhcee
Confidence 44544443 344 5999999999999999998877733 122454 455666 4444 4556699
Q ss_pred EEEEEeeEEeecccccceeecCC
Q 000133 2060 VTIQIDRVVMLGAVAGEYTLLPE 2082 (2100)
Q Consensus 2060 ~~~~~~~~~~~~~~~~~~~~~~~ 2082 (2100)
|.+..++......+.+-|.|.|+
T Consensus 232 vrv~v~~~~~~s~p~~W~~Lqp~ 254 (800)
T KOG2059|consen 232 VRVPVDVLRQKSSPAAWYYLQPR 254 (800)
T ss_pred EEeehhhhhhccCccceEEEecC
Confidence 99999999888899999999987
No 280
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.07 E-value=35 Score=42.97 Aligned_cols=144 Identities=12% Similarity=0.075 Sum_probs=85.5
Q ss_pred cCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHH-hhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHH
Q 000133 410 TMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLIS-LLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPP 488 (2100)
Q Consensus 410 ~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~-lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~ 488 (2100)
.+++..++..|+++|.|.+...++....... ..+..++. +....+.+|+.++..+|.-+........-..+=-++.-.
T Consensus 268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialr 346 (533)
T KOG2032|consen 268 TDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALR 346 (533)
T ss_pred cCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHH
Confidence 3567789999999999999886553322221 12333444 455567899999998888776321111111111224456
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHh--CCcHHHHHHHhhcCChhHHHHHHHHHHHHhc
Q 000133 489 LVQILESGSAKAKEDSASILRNLCNHS-EDIRACVES--ADAVPALLWLLKNGSANGKEIAAKTLNHLIH 555 (2100)
Q Consensus 489 Lv~lL~~~~~~vre~A~~aL~~L~~~~-~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~ 555 (2100)
+..++.+.+++.|..|...++.|+... ...+..+.+ .+...+|+-.+++.++.+- .||+.....|+
T Consensus 347 lR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va-~ACr~~~~~c~ 415 (533)
T KOG2032|consen 347 LRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVA-RACRSELRTCY 415 (533)
T ss_pred HHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHH-HHHHHHHHhcC
Confidence 778889999999999888777776421 234444443 2223444555566555543 45555555554
No 281
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.78 E-value=6 Score=49.30 Aligned_cols=142 Identities=15% Similarity=0.106 Sum_probs=89.2
Q ss_pred hccCChhhHHHHHHHHHHhhcCCchhhHHHHhhhcchhHHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHH-HHHhhcC
Q 000133 1281 LNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRS-TVAAARC 1359 (2100)
Q Consensus 1281 L~~~~~~~~~~A~~aL~~La~~~~~~~~~~~~v~~gal~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~-~~~~~~~ 1359 (2100)
.++++...+..|+..|++.+.+.+.+..-. ..-.++.++.-|-+..+.++.-++...|..+.....+.. ...-...
T Consensus 267 a~dp~a~~r~~a~r~L~~~as~~P~kv~th---~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~i 343 (533)
T KOG2032|consen 267 ATDPSAKSRGMACRGLGNTASGAPDKVRTH---KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNI 343 (533)
T ss_pred ccCchhHHHHHHHHHHHHHhccCcHHHHHh---HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhH
Confidence 345666677779999999998866554331 345788888888777677888888887777654332211 1111223
Q ss_pred hHHHHHHHhcCCchHHHHHHHHHHHhc---c---cHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 000133 1360 VEPLVSLLVTEFSPAQHSVVRALDKLV---D---DEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLG 1427 (2100)
Q Consensus 1360 i~~Lv~lL~~~~~~~~~~A~~aL~~L~---~---~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La 1427 (2100)
.-.+..+..+.+++.|..|......|. + .+...+.+ . +-..+|+.-++++++.+-++.-..+....
T Consensus 344 alrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v-~-k~~~~lllhl~d~~p~va~ACr~~~~~c~ 415 (533)
T KOG2032|consen 344 ALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQV-K-KRLAPLLLHLQDPNPYVARACRSELRTCY 415 (533)
T ss_pred HHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHH-H-hccccceeeeCCCChHHHHHHHHHHHhcC
Confidence 346777888999999999877766666 2 22222222 1 22345666677888887665554444433
No 282
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=88.73 E-value=16 Score=45.07 Aligned_cols=203 Identities=11% Similarity=0.141 Sum_probs=149.0
Q ss_pred hhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhh-----HHHHHh--cCchHHHHHhhcCCCHHHHHHHHHHHHH
Q 000133 601 SAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDL-----RESSIA--VKTLWSVMKLLDVGSECILVEASRCLAA 673 (2100)
Q Consensus 601 i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~-----~~~~~~--~g~v~~Lv~lL~~~~~~v~~~aa~aL~~ 673 (2100)
+...+.+..|+..|..-+-+.|+.++....++.+...+. .+.+.. ..++..|+..-..+ ++...+-..|+.
T Consensus 72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~--dial~~g~mlRe 149 (335)
T PF08569_consen 72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENP--DIALNCGDMLRE 149 (335)
T ss_dssp HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGST--TTHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCc--cccchHHHHHHH
Confidence 334566889999999999999999999999998764332 222322 23555555555543 455666666666
Q ss_pred HhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcC-cHHHHHHHH---cCcHHHHHHHHccCChhHHH
Q 000133 674 IFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD-SEVSEKAIA---EEIILPATRVLCEGTISGKT 749 (2100)
Q Consensus 674 L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~-~~~~~~~v~---~~~v~~L~~ll~~~~~~~~~ 749 (2100)
...+ ....+. +.....+..+.+.+..++-++...|..++..+... ++...+++. +..+.....++.+++--+++
T Consensus 150 c~k~-e~l~~~-iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkr 227 (335)
T PF08569_consen 150 CIKH-ESLAKI-ILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKR 227 (335)
T ss_dssp HTTS-HHHHHH-HHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHH
T ss_pred HHhh-HHHHHH-HhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeeh
Confidence 5444 334454 67788888899999999999999999999998844 556666664 46667788888888877999
Q ss_pred HHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcccccchHhHHHHHHHHHHcC
Q 000133 750 LAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSG 808 (2100)
Q Consensus 750 ~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~~~~al~~L~~L~~~~ 808 (2100)
++.+-|++++-...+...+..|+....-+.-++.+|++.+..+. .+|..++=-+..++
T Consensus 228 qslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq-~eAFhvFKvFVANp 285 (335)
T PF08569_consen 228 QSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQ-FEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHH-HHHHHHHHHHHH-S
T ss_pred hhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhh-HHHHHHHHHHHhCC
Confidence 99999999999999988889998889999999999999888888 89988887765444
No 283
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=88.27 E-value=1.1 Score=45.56 Aligned_cols=70 Identities=6% Similarity=0.007 Sum_probs=59.0
Q ss_pred cHHHHHHhhc-CCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 000133 401 AKRLLVGLIT-MATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLS 470 (2100)
Q Consensus 401 ~i~~Lv~lL~-~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs 470 (2100)
.++.|+.+|. +.++.+..-||.=|+.++...+.-+..+.+.|+-..++.++.+++++++.+|..++..+.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4777889984 558888899999999999998888888878889999999999999999999999888764
No 284
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=88.27 E-value=34 Score=45.98 Aligned_cols=223 Identities=13% Similarity=0.112 Sum_probs=140.3
Q ss_pred cCCchHHHHHHHHHHHhcccHHHHHHHHhcCCHHHHHHhh-cCCChhHHHHHHHHHHHhhcCCchhhHHHH--hcCcHHH
Q 000133 1369 TEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLL-YGRNYMLHEAISRALVKLGKDRPSCKLEMV--KAGVIES 1445 (2100)
Q Consensus 1369 ~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~g~i~~L~~lL-~~~~~~vr~~A~~aL~~La~~~~~~k~~i~--~~~~i~~ 1445 (2100)
++.|.-...|..++.+++........+. .-.....+..+ .+..+.+|-.|+.+++..++.. .+. ..+.++-
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~-~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~-----vl~~~~p~ild~ 534 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLL-QHFLNATVNALTMDVPPPVKISAVRAFCGYCKVK-----VLLSLQPMILDG 534 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHH-HHHHHHHHHhhccCCCCchhHHHHHHHHhccCce-----eccccchHHHHH
Confidence 4556555677777777663210000010 11133334444 3777889999999998888442 121 2556777
Q ss_pred HHHHhccCChhHHHHHHHHHHHHHhccCCcccccccCchHHHHHHhccCCCCchhHhHHHHHHHHhhcCCCccccccccc
Q 000133 1446 VLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTS 1525 (2100)
Q Consensus 1446 lv~~L~~~~~~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~~~~~ 1525 (2100)
+..+....++++.....++|................++.+.++.++..+.++|.+...+-.++..|++...|... ..
T Consensus 535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~---m~ 611 (1005)
T KOG2274|consen 535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGP---MQ 611 (1005)
T ss_pred HHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcc---hH
Confidence 777777777777777777765555544433334466677777888877777787777777777776653333322 23
Q ss_pred CCChHhhhhccCCCC----HHHHHHHHHHHHHhhcc--ccccccccccCchHHHHHHh-ccCCHHHHHHHHHHHHHhhcC
Q 000133 1526 HQAIEPLIPLLDSPA----PAVQQLAAELLSHLLLE--EQLQKDPVTQQVIGPLIRVL-GSGIHILQQRAVKALVSIALT 1598 (2100)
Q Consensus 1526 ~~~l~~Lv~~L~~~~----~~vq~~a~~aL~~l~~~--~~~~~~l~~~g~i~~Lv~lL-~s~~~~vr~~Al~AL~~Ls~~ 1598 (2100)
.-.++.|++.|..+. ......++..|.-+... ++.-..+. +-+.+++.+.. .+++.+.-+.+-.||..+-..
T Consensus 612 e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~-~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 612 ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI-CYAFPAVAKITLHSDDHETLQNATECLRALISV 690 (1005)
T ss_pred HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-HHHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence 346888999998665 67777788888866542 33333333 24567777755 678888888999999988776
Q ss_pred Chh
Q 000133 1599 WPN 1601 (2100)
Q Consensus 1599 ~~n 1601 (2100)
..-
T Consensus 691 ~~e 693 (1005)
T KOG2274|consen 691 TLE 693 (1005)
T ss_pred CHH
Confidence 544
No 285
>PRK09169 hypothetical protein; Validated
Probab=88.15 E-value=1.9e+02 Score=43.81 Aligned_cols=229 Identities=20% Similarity=0.137 Sum_probs=108.0
Q ss_pred cccHHHHHHhcCCCCCCCCchHHHHHHHHHHhhcCchhhhHHHhcCcHHHHHHHHhcCCcchHHHHHHHHH-HHhhcCHH
Q 000133 1144 RKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDATEEAATDLL-GILFSSAE 1222 (2100)
Q Consensus 1144 ~~~i~~Lv~~l~~~~~~~~~~~~Al~~L~~la~~~~~~r~~i~e~G~i~~L~~~L~s~~~~~~~~~~~~ll-~~l~~~~~ 1222 (2100)
...+..|.+.+.++++.. .+...+..|+..-......-.+.-.+..+++.++.=+....+......+ ..|..++.
T Consensus 122 ~~~~a~l~n~lsK~~d~~----aC~~a~a~ia~q~~~~~~~~l~~~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~ 197 (2316)
T PRK09169 122 LAQLAHLGNKLSKYPDRP----ACMAAIAWIAGQLLDALREALDAISFALLLNALSKWPDNTDCQTAAEQLADRLASDSR 197 (2316)
T ss_pred HHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccCCCchHHHHHHHHHHHHhccCHH
Confidence 344456667777766644 2333333333311111112223456777888888765555555544444 34666676
Q ss_pred HHhhhcccCcHHHHHHHHhc-C-CHHHHHHHHHHHHHhhcchhhhhhhhhcCChHHHHHhhccC-ChhhHHHHHHHH-HH
Q 000133 1223 IRRHESAFAAVSQLVAVLRL-G-GRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTG-LEREQHAAIAAL-VR 1298 (2100)
Q Consensus 1223 ~~~~~~~~~al~~Li~~L~~-~-~~~~r~~Aa~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~A~~aL-~~ 1298 (2100)
.... .+...+..++..|.. . +...+..+...-..|......+ .......+..++..|+.= ..+..+.|+.+| ..
T Consensus 198 l~~a-l~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l~-~~l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~r 275 (2316)
T PRK09169 198 LLQA-MDAQEVANALNALSKWPDSPRCRNAAERLAERLADEPGLL-QSLRAQEVALLLNALSKWPDDEACRQAAEALAAR 275 (2316)
T ss_pred HHHh-cchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHHH-HhcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 6644 345566666666642 2 3334444433333333322222 233456677777777542 223344444444 33
Q ss_pred hhcCCchhhHHHHhhhcchhHHHHHHHhhcCC-hhhHHHHHHHHHHHhcCcchHHHHHhhcChHHHHHHHhcCCchHHHH
Q 000133 1299 LLSENPSRALAVADVEMNAVDVLCRILSSNCS-MELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHS 1377 (2100)
Q Consensus 1299 La~~~~~~~~~~~~v~~gal~~L~~lL~~~~~-~~~~~~a~~~L~~L~~~~~~r~~~~~~~~i~~Lv~lL~~~~~~~~~~ 1377 (2100)
|+....-+..+ +...+...+.-|+.-++ +..+..+..+-..|...+..+..+...+.-+.|-.+-+-++.+.-..
T Consensus 276 la~~~~lr~~~----~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~~~~l~~~~~aQ~vAN~LNALSKWp~~~~c~~ 351 (2316)
T PRK09169 276 LAREPGLRLAL----DPQGVANALNALSKWPDTEACRQAAEALAERLAQERGLLQAMNAQAVANALNALSKWPDEEACRA 351 (2316)
T ss_pred HhcChhhhhhc----CHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHhcCCCcHHHHH
Confidence 44332222211 33333333333433333 34444555555666666665545444444444444444444433333
Q ss_pred HHHHH
Q 000133 1378 VVRAL 1382 (2100)
Q Consensus 1378 A~~aL 1382 (2100)
|+.+|
T Consensus 352 Aa~~L 356 (2316)
T PRK09169 352 AAEAL 356 (2316)
T ss_pred HHHHH
Confidence 33333
No 286
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=87.94 E-value=32 Score=42.50 Aligned_cols=210 Identities=11% Similarity=0.121 Sum_probs=138.4
Q ss_pred HHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhh
Q 000133 522 VESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGS 601 (2100)
Q Consensus 522 i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i 601 (2100)
+...+.+..|+..|..-+.+.++.++....++......+...+.+..+...-+
T Consensus 72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~p--------------------------- 124 (335)
T PF08569_consen 72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRP--------------------------- 124 (335)
T ss_dssp HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--T---------------------------
T ss_pred HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCH---------------------------
Confidence 34567899999999999999999999999998775433222111222111111
Q ss_pred hccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchh
Q 000133 602 AANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVREN 681 (2100)
Q Consensus 602 ~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~ 681 (2100)
..+..|+..-. ++++--.+...|....+. +.....+.....+..+.+....++-++...|..++..+.......
T Consensus 125 ---eil~~L~~gy~--~~dial~~g~mlRec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~ 198 (335)
T PF08569_consen 125 ---EILDILLRGYE--NPDIALNCGDMLRECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKL 198 (335)
T ss_dssp ---HHHHHHHHGGG--STTTHHHHHHHHHHHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHH
T ss_pred ---HHHHHHHHHhc--CccccchHHHHHHHHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHH
Confidence 11333333322 444444566666666665 556666777778888999999999999999999999876654432
Q ss_pred HHHHHHhC---CChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHH---HHH-HcCcHHHHHHHHccCChhHHHHHHHH
Q 000133 682 REVAAVAR---DALSPLVVLAGSPVLEVAEQATCALANLILDSEVSE---KAI-AEEIILPATRVLCEGTISGKTLAAAA 754 (2100)
Q Consensus 682 ~~~~~~~~---~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~---~~v-~~~~v~~L~~ll~~~~~~~~~~Aa~a 754 (2100)
... +... .++.....++.+++==+|.++..-|+.|+.+..... .++ +.+-+..++.++++.+..++.+|-..
T Consensus 199 ~a~-fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhv 277 (335)
T PF08569_consen 199 VAE-FLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHV 277 (335)
T ss_dssp HHH-HHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHH
Confidence 111 2222 356677789999999999999999999997765443 344 67889999999999999999999887
Q ss_pred HHHHHhcCccc
Q 000133 755 IARLLHSRKID 765 (2100)
Q Consensus 755 L~~l~~~~~~~ 765 (2100)
+--....+.-.
T Consensus 278 FKvFVANp~K~ 288 (335)
T PF08569_consen 278 FKVFVANPNKP 288 (335)
T ss_dssp HHHHHH-SS-B
T ss_pred HHHHHhCCCCC
Confidence 76555554444
No 287
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=87.67 E-value=19 Score=48.11 Aligned_cols=200 Identities=18% Similarity=0.123 Sum_probs=131.3
Q ss_pred cCCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHH
Q 000133 65 SGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPV 144 (2100)
Q Consensus 65 ~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~ 144 (2100)
+..+.+|+.+.+++...|+-+.... .+.+.+..|..+....+.++--.-..+|..+..- |. ......++-+.|.
T Consensus 502 ~~~~~~ki~a~~~~~~~~~~~vl~~--~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~---dp-ef~as~~skI~P~ 575 (1005)
T KOG2274|consen 502 DVPPPVKISAVRAFCGYCKVKVLLS--LQPMILDGLLQLASKSSDEVLVLLMEALSSVVKL---DP-EFAASMESKICPL 575 (1005)
T ss_pred CCCCchhHHHHHHHHhccCceeccc--cchHHHHHHHHHcccccHHHHHHHHHHHHHHhcc---Ch-hhhhhhhcchhHH
Confidence 4566799999999999984333211 1224455666666666667666666777766652 11 1222334445555
Q ss_pred HHHHhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCC----HHHHHHHHHHHHHHhhcCcchh
Q 000133 145 LWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQ----SSTQAHVCFLLACMMEEDVSVC 220 (2100)
Q Consensus 145 L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~----~~v~~~a~~~L~~L~~~~~~~~ 220 (2100)
.+.+. ....+||++...+--++..++...+.+.. + ....+|.+++.|..++ +....-+..+|.......++..
T Consensus 576 ~i~lF-~k~s~DP~V~~~~qd~f~el~q~~~~~g~-m-~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL 652 (1005)
T KOG2274|consen 576 TINLF-LKYSEDPQVASLAQDLFEELLQIAANYGP-M-QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPL 652 (1005)
T ss_pred HHHHH-HHhcCCchHHHHHHHHHHHHHHHHHhhcc-h-HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCc
Confidence 55544 44557788877777777777643222211 2 3357999999999876 5667778888877777777677
Q ss_pred hHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChH
Q 000133 221 SRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIP 273 (2100)
Q Consensus 221 ~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~ 273 (2100)
....-.-+.|++.+..-++.|.++-..+-.+|+.+-....+.-..-...+|..
T Consensus 653 ~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~ 705 (1005)
T KOG2274|consen 653 PNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHN 705 (1005)
T ss_pred cHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCcc
Confidence 77777888999999988877778999999999998875544333333344443
No 288
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=87.43 E-value=21 Score=40.79 Aligned_cols=142 Identities=15% Similarity=0.127 Sum_probs=105.8
Q ss_pred HHHHHHHhhcCCchhhHHHHhhhcchhHHHHHHHhhc----CChhhHHHHHHHHHHHhcCcc--hHHHHHhhcChHHHHH
Q 000133 1292 AIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSN----CSMELKGDAAELCGVLFGNTR--IRSTVAAARCVEPLVS 1365 (2100)
Q Consensus 1292 A~~aL~~La~~~~~~~~~~~~v~~gal~~L~~lL~~~----~~~~~~~~a~~~L~~L~~~~~--~r~~~~~~~~i~~Lv~ 1365 (2100)
|+..|--+++..+.|..+ +++.+--.|..+|... +.+-+|-.++.+++.|..+.+ +....-.++.+|..++
T Consensus 99 aL~LlQcvASHpdTr~~F---L~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr 175 (293)
T KOG3036|consen 99 ALALLQCVASHPDTRRAF---LRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR 175 (293)
T ss_pred HHHHHHHHhcCcchHHHH---HHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence 777777888899999888 5677777788887543 556788889999999988754 4445566889999999
Q ss_pred HHhcCCchHHHHHHHHHHHhcccHHHHHHH-------HhcC-CHH-HHHHhhcCCChhHHHHHHHHHHHhhcCCchhhHH
Q 000133 1366 LLVTEFSPAQHSVVRALDKLVDDEQLAELV-------AAHG-AVI-PLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLE 1436 (2100)
Q Consensus 1366 lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~-------~~~g-~i~-~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k~~ 1436 (2100)
.+..+++..+.-|..++.++..++..-+.+ ...+ .+. .+..+.+.++.++-+.++.+...++.+ |..+..
T Consensus 176 ime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn-prar~a 254 (293)
T KOG3036|consen 176 IMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN-PRARAA 254 (293)
T ss_pred HHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC-HHHHHH
Confidence 999999999999999999988544332222 1111 223 333555678999999999999999876 566655
Q ss_pred H
Q 000133 1437 M 1437 (2100)
Q Consensus 1437 i 1437 (2100)
+
T Consensus 255 L 255 (293)
T KOG3036|consen 255 L 255 (293)
T ss_pred H
Confidence 4
No 289
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=87.21 E-value=1 Score=34.18 Aligned_cols=29 Identities=21% Similarity=0.397 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 000133 607 VETMIKILSSTKEETQAKSASALAGIFET 635 (2100)
Q Consensus 607 i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~ 635 (2100)
+|.+++++.++++++|..|+.+|.+++..
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 78899999999999999999999999853
No 290
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=86.82 E-value=3.8 Score=47.86 Aligned_cols=98 Identities=14% Similarity=0.215 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhC-CCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhcc
Q 000133 416 VQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLG-LSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILE 494 (2100)
Q Consensus 416 v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~-s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~ 494 (2100)
....|.+.|..+|--++..+..+.+..++..|+++|. ...+.++..+..+|..+..+++.+...+-+.+|+..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 4556789999999988888888989999999999995 457888988888888877789999999999999999999998
Q ss_pred CC--CHHHHHHHHHHHHHHhc
Q 000133 495 SG--SAKAKEDSASILRNLCN 513 (2100)
Q Consensus 495 ~~--~~~vre~A~~aL~~L~~ 513 (2100)
+. +.++|-.+...|.-...
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred cccccHHHhHHHHHHHHHHHc
Confidence 76 67788877777665554
No 291
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=86.77 E-value=4 Score=52.92 Aligned_cols=133 Identities=19% Similarity=0.229 Sum_probs=82.2
Q ss_pred HHHHHHHHHccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhcCCHHHHHHHHHHHHhhhccch-hhH
Q 000133 11 VAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENE-LRV 89 (2100)
Q Consensus 11 v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~-~~~ 89 (2100)
+...-..+...+.+..+|+-|...+..+.+.-....+ .++..++.++.+++..+|.+|.+.|-.+|+++. .-.
T Consensus 22 ~~~y~~il~~~kg~~k~K~Laaq~I~kffk~FP~l~~------~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~ 95 (556)
T PF05918_consen 22 EEDYKEILDGVKGSPKEKRLAAQFIPKFFKHFPDLQE------EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVS 95 (556)
T ss_dssp HHHHHHHHHGGGS-HHHHHHHHHHHHHHHCC-GGGHH------HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHH------HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHh
Confidence 3344444445556778888888888888877554433 478899999999999999999999999998754 334
Q ss_pred HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHHHHHHH
Q 000133 90 KVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTG 165 (2100)
Q Consensus 90 ~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~ 165 (2100)
++ ...|+.+|.++++......-.+|..+-.. | ..+.+..++..+......+..+++.+..
T Consensus 96 kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~---d--------~k~tL~~lf~~i~~~~~~de~~Re~~lk 155 (556)
T PF05918_consen 96 KV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQ---D--------PKGTLTGLFSQIESSKSGDEQVRERALK 155 (556)
T ss_dssp HH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHH---HS-HHHHHHHHH
T ss_pred HH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhc---C--------cHHHHHHHHHHHHhcccCchHHHHHHHH
Confidence 44 56789999999888777777788777661 1 2345556666665322344445554433
No 292
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.62 E-value=1.6e+02 Score=41.36 Aligned_cols=215 Identities=13% Similarity=0.078 Sum_probs=116.6
Q ss_pred CHHHHHHHHHHHHHhhcchhhhhhhhh--cCChHHHHHhhccCChhhHHHHHHHHHHhhcC--CchhhHHHHhhhcchhH
Q 000133 1244 GRGARYSAAKALESLFSADHIRNAESA--RQAVQPLVEILNTGLEREQHAAIAALVRLLSE--NPSRALAVADVEMNAVD 1319 (2100)
Q Consensus 1244 ~~~~r~~Aa~aL~~L~~~~~~~~~i~~--~~~i~~Lv~lL~~~~~~~~~~A~~aL~~La~~--~~~~~~~~~~v~~gal~ 1319 (2100)
+...+..+=+.|..+...+.......+ ......|.+.+++.+...+..++.+|..|-.. ++....+. . .++
T Consensus 667 ~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~----k-~I~ 741 (1176)
T KOG1248|consen 667 STKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP----K-LIP 741 (1176)
T ss_pred cHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH----H-HHH
Confidence 456666776778887766333332222 23345566666666666666666555555432 23333331 1 233
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHH---hhcChHHHHHHHhcC----CchHHHHHHHHHHHhcc-cHHH
Q 000133 1320 VLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVA---AARCVEPLVSLLVTE----FSPAQHSVVRALDKLVD-DEQL 1391 (2100)
Q Consensus 1320 ~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~~~---~~~~i~~Lv~lL~~~----~~~~~~~A~~aL~~L~~-~~~~ 1391 (2100)
.++=.+.. .+...++.+..+|..+.. .......+ ....++..+..+.-+ ....+...+-++..+.. ....
T Consensus 742 EvIL~~Ke-~n~~aR~~Af~lL~~i~~-i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ 819 (1176)
T KOG1248|consen 742 EVILSLKE-VNVKARRNAFALLVFIGA-IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNI 819 (1176)
T ss_pred HHHHhccc-ccHHHHhhHHHHHHHHHH-HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhcc
Confidence 33323333 366777777777777662 00001111 122455555555443 33333332444444441 1112
Q ss_pred HHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCchhhHHHHhcCcHHHHHHHhccCChhHHHHHHHHH
Q 000133 1392 AELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELL 1465 (2100)
Q Consensus 1392 ~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k~~i~~~~~i~~lv~~L~~~~~~~~~~aa~lL 1465 (2100)
-....-.+++..++.+|.+.++++++.|+..+..++..-|+....--....++.+..++.+..-.++..+..++
T Consensus 820 ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Ll 893 (1176)
T KOG1248|consen 820 LDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLL 893 (1176)
T ss_pred ccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 22223345678888889999999999999999999887655443333344677777776666555555555444
No 293
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.60 E-value=13 Score=49.32 Aligned_cols=186 Identities=15% Similarity=0.097 Sum_probs=119.5
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccc
Q 000133 56 VPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKI 135 (2100)
Q Consensus 56 v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~ 135 (2100)
....+..+.++...+|-.+...|.++.++.+-...+...+.+...+..|++.|+-+-..|...+.-|+.
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lce----------- 797 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCE----------- 797 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHH-----------
Confidence 445666677788889999999999999765555556667889999999999999887777777777776
Q ss_pred hhccCChHHHHHH-hhccCCCcchHHHHHHHHHHHhccCCh----hhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHH
Q 000133 136 FSTEGVVPVLWEQ-LKNGLKSGNVVDNLLTGALRNLSTSTE----GFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLA 210 (2100)
Q Consensus 136 ~~~~g~vp~L~~l-L~~~~~~~~~v~~~a~~aL~nL~~~~~----~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~ 210 (2100)
+-.+.++|-|.+. ....+...+.-+-.+-.++.++...-. .++. -.+...++..++++...|..++..|+
T Consensus 798 vy~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-----~Li~tfl~gvrepd~~~RaSS~a~lg 872 (982)
T KOG4653|consen 798 VYPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-----VLINTFLSGVREPDHEFRASSLANLG 872 (982)
T ss_pred hcchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-----HHHHHHHHhcCCchHHHHHhHHHHHH
Confidence 2345678888874 333332212211112233333332111 2222 23455666667777788999999999
Q ss_pred HHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcC
Q 000133 211 CMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDH 258 (2100)
Q Consensus 211 ~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~ 258 (2100)
.++....-.... .-..+..-++.+.+.+...-+|+.|+..+..+-.+
T Consensus 873 ~Lcq~~a~~vsd-~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 873 QLCQLLAFQVSD-FFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNG 919 (982)
T ss_pred HHHHHHhhhhhH-HHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhc
Confidence 888432211111 12234555666666666678999999999988764
No 294
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=86.44 E-value=4.1 Score=44.48 Aligned_cols=134 Identities=17% Similarity=0.163 Sum_probs=89.5
Q ss_pred CCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHH-HhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH-hcCch
Q 000133 572 DLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIK-ILSSTKEETQAKSASALAGIFETRKDLRESSI-AVKTL 649 (2100)
Q Consensus 572 ~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~-lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~-~~g~v 649 (2100)
..+++|..+.-++..+.. ...+..+.. +...+. ++..++.+-...+..++..+....++....+. ..|.+
T Consensus 17 ~~~~~r~~a~v~l~k~l~--~~~~~~~~~------~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~ 88 (157)
T PF11701_consen 17 QPEEVRSHALVILSKLLD--AAREEFKEK------ISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFL 88 (157)
T ss_dssp TSCCHHHHHHHHHHHHHH--HHHHHHHHH------HHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHH
T ss_pred CCHhHHHHHHHHHHHHHH--HhHHHHHHH------HHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHH
Confidence 556677777777666631 111111111 333333 44444455777899999999999888777665 56788
Q ss_pred HHHHHhhc--CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCC-CCHH-HHHHHHHHHHH
Q 000133 650 WSVMKLLD--VGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGS-PVLE-VAEQATCALAN 716 (2100)
Q Consensus 650 ~~Lv~lL~--~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~-~~~e-vr~~aa~aL~~ 716 (2100)
+.+..+.. ..+..++..++.+|..=|.. ..+..++...+++.|.++.+. +++. +|..|+-.|+.
T Consensus 89 ~~l~~~~~~~~~~~~~~~~~lell~aAc~d---~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 89 ESLLPLASRKSKDRKVQKAALELLSAACID---KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHHHHHH-CTS-HHHHHHHHHHHHHHTTS---HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 88888888 77888888888888665433 334446777899999999964 4455 78888888764
No 295
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=86.06 E-value=15 Score=45.02 Aligned_cols=171 Identities=18% Similarity=0.175 Sum_probs=107.6
Q ss_pred cHHHHH-HHhhcCChhHHHHHHHHHHHHhcCCCC---CcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHH---
Q 000133 527 AVPALL-WLLKNGSANGKEIAAKTLNHLIHKSDT---ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILRE--- 599 (2100)
Q Consensus 527 ~i~~Lv-~lL~~~~~~~~~~Aa~aL~~L~~~~~~---~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~--- 599 (2100)
.+..|+ ..+++.++.+++.|..+|+-.|--+.. ..++.+...+..++++++..+..++..+...-+....-..
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~ 106 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDN 106 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhcc
Confidence 344444 566778899999999999988765543 3455666677777888999999999887765432211000
Q ss_pred --hhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh-cCchHHHHHhhcCC---CHHHHHHHHHHHHH
Q 000133 600 --GSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIA-VKTLWSVMKLLDVG---SECILVEASRCLAA 673 (2100)
Q Consensus 600 --~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~-~g~v~~Lv~lL~~~---~~~v~~~aa~aL~~ 673 (2100)
.......+..+.+++.+.++++|..|+.++++|.-.+. +.. ..++..|+.+.-++ +..-.+++....-.
T Consensus 107 ~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~-----i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp 181 (298)
T PF12719_consen 107 DESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGR-----ISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFP 181 (298)
T ss_pred CccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC-----CCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHH
Confidence 11223456778888999999999999999999887632 111 23444555444221 21234455444444
Q ss_pred HhcCCchhHHHHHHhCCChHHHHHHhCCCC
Q 000133 674 IFLSVRENREVAAVARDALSPLVVLAGSPV 703 (2100)
Q Consensus 674 L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~ 703 (2100)
...+....++. .+...+++.+..+.+.+.
T Consensus 182 ~y~~s~~~~Q~-~l~~~f~~~l~~~~~~~~ 210 (298)
T PF12719_consen 182 VYASSSPENQE-RLAEAFLPTLRTLSNAPD 210 (298)
T ss_pred HHHcCCHHHHH-HHHHHHHHHHHHHHhCcc
Confidence 43333333333 566778888888877644
No 296
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=85.91 E-value=2.9 Score=54.10 Aligned_cols=125 Identities=19% Similarity=0.166 Sum_probs=89.3
Q ss_pred CCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHH
Q 000133 659 GSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATR 738 (2100)
Q Consensus 659 ~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ 738 (2100)
++...++-|++-|.....+.++.... ++..++.|..+.+..||.+|...|..++.+.+... ..++..|+.
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~~~------Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v----~kvaDvL~Q 103 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQEE------AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHV----SKVADVLVQ 103 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGHHH------HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-H----HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHH------HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHH----hHHHHHHHH
Confidence 46788999999999999988865554 78999999999999999999999999996643322 478889999
Q ss_pred HHccCChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhh--cccccchHhHHHHHHHH
Q 000133 739 VLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLES--ASGSVATSEALDALAIL 804 (2100)
Q Consensus 739 ll~~~~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s--~~~~v~~~~al~~L~~L 804 (2100)
+|.+++.......-++|..++...+ .+++..+.+.+.+ +.++..++.++..|..-
T Consensus 104 lL~tdd~~E~~~v~~sL~~ll~~d~-----------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~k 160 (556)
T PF05918_consen 104 LLQTDDPVELDAVKNSLMSLLKQDP-----------KGTLTGLFSQIESSKSGDEQVRERALKFLREK 160 (556)
T ss_dssp HTT---HHHHHHHHHHHHHHHHH-H-----------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHHHHhcCc-----------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHH
Confidence 9999998888888889999987655 4566677777663 22444558888877644
No 297
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=85.86 E-value=1.9 Score=43.93 Aligned_cols=73 Identities=16% Similarity=0.173 Sum_probs=62.2
Q ss_pred cchHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 000133 604 NDAVETMIKIL-SSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFL 676 (2100)
Q Consensus 604 ~~~i~~Lv~lL-~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~ 676 (2100)
...+..|+.+| .+.++.+...||.=|+.+++..|..+..+-+.|+=..+++++.+++++++.+|+.|+..+..
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 34588999999 55688888899999999999988888888888999999999999999999999999988754
No 298
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=85.46 E-value=6.2 Score=48.28 Aligned_cols=164 Identities=18% Similarity=0.154 Sum_probs=105.2
Q ss_pred HHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCh-hhHHHH--
Q 000133 567 ALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRK-DLRESS-- 643 (2100)
Q Consensus 567 ~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~-~~~~~~-- 643 (2100)
..+++.++.+|..+.+|||-.+-..... . ...++.+...+..+++.++..|..++..+..... +..+..
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~Lld~~~--a------~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCLLDKEL--A------KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhChHH--H------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 4567788899999999999665554311 1 1237778888877899999999999998765422 221111
Q ss_pred -----HhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHh-CCChHHHHHHhCCCC----HHHHHHHHHH
Q 000133 644 -----IAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVA-RDALSPLVVLAGSPV----LEVAEQATCA 713 (2100)
Q Consensus 644 -----~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~-~~~l~~Lv~ll~~~~----~evr~~aa~a 713 (2100)
.....+..+...+.+.+++++..++..++.|..+.. +.. ...+..|+-+-.++. ..+|..-..-
T Consensus 106 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~------i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~F 179 (298)
T PF12719_consen 106 NDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGR------ISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVF 179 (298)
T ss_pred cCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC------CCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHH
Confidence 223577788888888899999999999999976542 122 345555555544432 3333332223
Q ss_pred HHHHhcCcHHHHHHHHcCcHHHHHHHHccCC
Q 000133 714 LANLILDSEVSEKAIAEEIILPATRVLCEGT 744 (2100)
Q Consensus 714 L~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~ 744 (2100)
+-..+......+..+....++.+..+.+...
T Consensus 180 fp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~ 210 (298)
T PF12719_consen 180 FPVYASSSPENQERLAEAFLPTLRTLSNAPD 210 (298)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHhCcc
Confidence 3333355555666666666676666665544
No 299
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=85.42 E-value=9.2 Score=44.79 Aligned_cols=83 Identities=14% Similarity=0.137 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhc
Q 000133 201 TQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATI 280 (2100)
Q Consensus 201 v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~ 280 (2100)
....|..+|.-++.-|++.+..+.....+..|+.+|...++..++..+..+|-.+--+++.+.+.+-+.+|+..++.++.
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 45667888888888899899999999999999999976666789999999998888889999999999999999999998
Q ss_pred CCC
Q 000133 281 APS 283 (2100)
Q Consensus 281 ~~~ 283 (2100)
+.+
T Consensus 187 ~~~ 189 (257)
T PF08045_consen 187 SKS 189 (257)
T ss_pred ccc
Confidence 764
No 300
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=85.09 E-value=0.35 Score=61.13 Aligned_cols=74 Identities=26% Similarity=0.464 Sum_probs=59.5
Q ss_pred EEecCCCCCccccccccCCCccccccceecccc-CCC--CCeEEEEeecCCccCCccc-ceEEEEEeeEEeecccccc
Q 000133 2003 KLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEI-PPK--GQKLHISCKNKSKMGKSSF-GKVTIQIDRVVMLGAVAGE 2076 (2100)
Q Consensus 2003 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 2076 (2100)
++.+--.|.-+|||+++..||++||.|.|++.- |+. +-++|..|+||+-..-+-| |..-+.+-+|-..++|+|+
T Consensus 979 ~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vpGva~~~~s 1056 (1103)
T KOG1328|consen 979 KFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVPGVAATGGS 1056 (1103)
T ss_pred ccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEeeccceecccccchHHHHhhCCCCCcccCCCc
Confidence 444556788899999999999999999998752 333 5599999999988766555 8888888888888888765
No 301
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=84.46 E-value=35 Score=39.05 Aligned_cols=136 Identities=13% Similarity=0.108 Sum_probs=95.1
Q ss_pred HHhCCCccchhhhccccHHHHHHhhc----C-CCHHHHHHHHHHHHHhhccCcc-chHHHHhCCcHHHHHHhhCCCCHHH
Q 000133 385 SLYGNPLLSIKLENSEAKRLLVGLIT----M-ATNEVQEELVRALLKLCNNEGS-LWRALQGREGIQLLISLLGLSSEQQ 458 (2100)
Q Consensus 385 ~L~~~~~~~~~l~~~g~i~~Lv~lL~----~-~~~~v~~~A~~aL~~L~~~~~~-~~~~i~~~g~i~~Lv~lL~s~~~~v 458 (2100)
.+++.|+.+..+.++...-.+-..|. + +.+-.|..+...++.|..+++. ....+...+.||..++.++.+++.-
T Consensus 105 cvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelS 184 (293)
T KOG3036|consen 105 CVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELS 184 (293)
T ss_pred HHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHH
Confidence 34888999888777765555555554 2 3456788899999999887654 4455667889999999999999999
Q ss_pred HHHHHHHHHHhccCCcccHHHHHh----c----CChH-HHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 000133 459 QECSVALLCLLSNENDDSKWAITA----A----GGIP-PLVQILESGSAKAKEDSASILRNLCNHSEDIRACV 522 (2100)
Q Consensus 459 ~~~A~~aL~nLs~~~~~~~~~i~~----~----g~i~-~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i 522 (2100)
+.-|..++..+-.+ +..-.-+.. - ..+. .+.++.+.+++..-.++..+..+|+. ++..|...
T Consensus 185 KtvA~fIlqKIlld-D~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd-nprar~aL 255 (293)
T KOG3036|consen 185 KTVATFILQKILLD-DVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD-NPRARAAL 255 (293)
T ss_pred HHHHHHHHHHHhhc-cccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence 99999999988753 332111110 0 1122 23445567789999999999999987 47666554
No 302
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=83.66 E-value=1.7 Score=55.80 Aligned_cols=99 Identities=25% Similarity=0.391 Sum_probs=82.2
Q ss_pred CceeeeeccchhhhhhCC---CcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCcc
Q 000133 1980 TLVVIIKRGNNMKQSVGN---PSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKSS 2056 (2100)
Q Consensus 1980 ~~~~~~~r~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2056 (2100)
.|-|.|--..|+--+ |. .--+|-+.+.+-+-=.|.+|-++..|-|-|+|. |+.|+-=+.|.++++|++ |+++.
T Consensus 6 sl~vki~E~knL~~~-~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~--~~iP~~F~~l~fYv~D~d-~~~D~ 81 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSY-GPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFY--FEIPRTFRYLSFYVWDRD-LKRDD 81 (800)
T ss_pred ceeEEEeecccCCCC-CCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceE--EecCcceeeEEEEEeccc-ccccc
Confidence 355666666666433 44 338999999888888899999999999999886 577999999999999999 98887
Q ss_pred c-ceEEEEEeeEEeecccccceeecCC
Q 000133 2057 F-GKVTIQIDRVVMLGAVAGEYTLLPE 2082 (2100)
Q Consensus 2057 ~-~~~~~~~~~~~~~~~~~~~~~~~~~ 2082 (2100)
. |||-|+=+++-+-.-..+-|+|.|-
T Consensus 82 ~IGKvai~re~l~~~~~~d~W~~L~~V 108 (800)
T KOG2059|consen 82 IIGKVAIKREDLHMYPGKDTWFSLQPV 108 (800)
T ss_pred ccceeeeeHHHHhhCCCCccceecccc
Confidence 6 9999999999887778888999765
No 303
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=83.55 E-value=1e+02 Score=42.60 Aligned_cols=243 Identities=18% Similarity=0.116 Sum_probs=134.5
Q ss_pred CCchHHHHHHHhcCC-----HHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhhc----CCC----HHHHHHHHHHH
Q 000133 53 SQAVPVLVSLLRSGS-----LAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLK----SSS----AEGQIAAAKTI 119 (2100)
Q Consensus 53 ~g~v~~L~~lL~~~~-----~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~----s~~----~~~~~~A~~aL 119 (2100)
-|++..++.++.+-. .+.-......|...|+-..+|..++..|+++.|++.|. .++ .+.-+.-...+
T Consensus 116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~Ii 195 (802)
T PF13764_consen 116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEII 195 (802)
T ss_pred CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHH
Confidence 577888888887532 24445567777778899999999999999999999995 323 33333333333
Q ss_pred HHHhccCCCCc-ccccchhccC--------ChHHHHHHhhccC-CCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHH
Q 000133 120 YAVSQGGAKDY-VGSKIFSTEG--------VVPVLWEQLKNGL-KSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDI 189 (2100)
Q Consensus 120 ~~Ls~~~~~~~-~~~~~~~~~g--------~vp~L~~lL~~~~-~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~ 189 (2100)
..+......+. .+...+.... -+..|++.+.+.. ...+.+....++.|-+|+..+++....+++. ..+
T Consensus 196 E~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F~p 273 (802)
T PF13764_consen 196 ESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--FKP 273 (802)
T ss_pred HHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--HHH
Confidence 33332111111 1111111111 2666777776542 2234466778899999998887766655432 222
Q ss_pred HHHhHccC---CHHHHHHHHHHHHHHhhcC------cchhhHHhhhchHHHHHHHhcCCCC-------HH--------HH
Q 000133 190 LVKLLTLG---QSSTQAHVCFLLACMMEED------VSVCSRVLAADATKQLLKLLGSGNE-------AS--------VR 245 (2100)
Q Consensus 190 Lv~lL~s~---~~~v~~~a~~~L~~L~~~~------~~~~~~i~~~g~i~~Lv~lL~~~~~-------~~--------v~ 245 (2100)
.+++=+-+ .++- .....++..++..- ..-+..+++.|.+...++.|....+ ++ ..
T Consensus 274 ~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psL 352 (802)
T PF13764_consen 274 YLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSL 352 (802)
T ss_pred hcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcH
Confidence 22211111 1111 12234444444222 1246777888999888887753221 11 23
Q ss_pred HHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHH
Q 000133 246 AEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALA 304 (2100)
Q Consensus 246 ~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~ 304 (2100)
..+...|.-|+.++...+.. ...++| +++..|...+.+ ..-..+.|+.+.+|.
T Consensus 353 p~iL~lL~GLa~gh~~tQ~~-~~~~~l-~~lH~LEqvss~----~~IGslAEnlLeal~ 405 (802)
T PF13764_consen 353 PYILRLLRGLARGHEPTQLL-IAEQLL-PLLHRLEQVSSE----EHIGSLAENLLEALA 405 (802)
T ss_pred HHHHHHHHHHHhcCHHHHHH-HHhhHH-HHHHHhhcCCCc----cchHHHHHHHHHHHh
Confidence 44667888888877666555 455667 444445433211 122456666666665
No 304
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=83.53 E-value=45 Score=41.77 Aligned_cols=175 Identities=17% Similarity=0.182 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccC-CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHH
Q 000133 456 EQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILES-GSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWL 534 (2100)
Q Consensus 456 ~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~l 534 (2100)
.+-+..|..-|..+.+......+.=.-...+..+++.|++ .++..++.|...|..++...+. |-.=-.+-++..+++.
T Consensus 301 a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~-~l~DstE~ai~K~Lea 379 (516)
T KOG2956|consen 301 ASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA-RLFDSTEIAICKVLEA 379 (516)
T ss_pred hhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH-hhhchHHHHHHHHHHH
Confidence 3444555554555544444444443333466778888888 5888899999999999985332 1110113356666777
Q ss_pred hhcCChhHHHHHH-HHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHH
Q 000133 535 LKNGSANGKEIAA-KTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKI 613 (2100)
Q Consensus 535 L~~~~~~~~~~Aa-~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~l 613 (2100)
-++..+.+...|. .++.-++.+.....|..+..++...+...-..++..+-.+....+.+++. ..+ .+..|.+++.
T Consensus 380 a~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~-~ll--~diaP~~iqa 456 (516)
T KOG2956|consen 380 AKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELL-NLL--PDIAPCVIQA 456 (516)
T ss_pred HhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHH-Hhh--hhhhhHHHHH
Confidence 7777776655555 44555666655556666666665555554455555666555555544422 222 3458899999
Q ss_pred hcCCCHHHHHHHHHHHHHHhc
Q 000133 614 LSSTKEETQAKSASALAGIFE 634 (2100)
Q Consensus 614 L~s~~~~~~~~Aa~aL~~L~~ 634 (2100)
..+.+..+|+.|..||-.+..
T Consensus 457 y~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 457 YDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred hcCchHHhhhhHHHhHHHHHH
Confidence 999999999999999987764
No 305
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=83.46 E-value=28 Score=46.05 Aligned_cols=102 Identities=13% Similarity=0.151 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHHHhhccCccchHHHHhCC----cHHHHHHhhC-CCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChH
Q 000133 413 TNEVQEELVRALLKLCNNEGSLWRALQGRE----GIQLLISLLG-LSSEQQQECSVALLCLLSNENDDSKWAITAAGGIP 487 (2100)
Q Consensus 413 ~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g----~i~~Lv~lL~-s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~ 487 (2100)
+++++..|+.+|.|+.+..+.+|...+..- +-+.. .+. .+.....++.. ...+.++...+||.
T Consensus 675 Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~--~l~~~~ks~~le~~l----------~~mw~~Vr~ndGIk 742 (1516)
T KOG1832|consen 675 DPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRI--FLGAGTKSAKLEQVL----------RQMWEAVRGNDGIK 742 (1516)
T ss_pred CHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccc--cccCCCchHHHHHHH----------HHHHHHHhcCccHH
Confidence 789999999999999988777766554211 00100 111 11122222222 23455666678999
Q ss_pred HHHHhccCC-----CHHHHHHHHHHHHHHhcCChhhHHHHHhCCc
Q 000133 488 PLVQILESG-----SAKAKEDSASILRNLCNHSEDIRACVESADA 527 (2100)
Q Consensus 488 ~Lv~lL~~~-----~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~ 527 (2100)
.|++||+-. -..+|..|+.+|.-|+.+ +..|..+.+-..
T Consensus 743 iLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~-~tVrQIltKLpL 786 (1516)
T KOG1832|consen 743 ILLKLLQYKNPPTTADCIRALACRVLLGLARD-DTVRQILTKLPL 786 (1516)
T ss_pred HHHHHHhccCCCCcHHHHHHHHHHHHhccccC-cHHHHHHHhCcc
Confidence 999999754 357899999999999985 777777665433
No 306
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=82.85 E-value=1.1e+02 Score=42.09 Aligned_cols=181 Identities=15% Similarity=0.193 Sum_probs=110.0
Q ss_pred HHhCCcHHHHHHhhCCC-----CHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhcc----CCC----HHHHHHH
Q 000133 438 LQGREGIQLLISLLGLS-----SEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILE----SGS----AKAKEDS 504 (2100)
Q Consensus 438 i~~~g~i~~Lv~lL~s~-----~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~----~~~----~~vre~A 504 (2100)
+.+.||+..|+.++.+- ...........|..++. .+.+++.+.+.|+++.|+..+. ..+ +++-+.-
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 33569999999988752 33444556666776764 7899999999999999998774 333 6677777
Q ss_pred HHHHHHHhcCChhhHHHH----HhCC--------cHHHHHHHhhcC----ChhHHHHHHHHHHHHhcCCCCCcHHHHHHH
Q 000133 505 ASILRNLCNHSEDIRACV----ESAD--------AVPALLWLLKNG----SANGKEIAAKTLNHLIHKSDTATISQLTAL 568 (2100)
Q Consensus 505 ~~aL~~L~~~~~~~~~~i----~~~g--------~i~~Lv~lL~~~----~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~l 568 (2100)
..++..+........... .... -+..|++.+.+. ++.+.+..+++|-+|++..+ ..+..|+.-
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~-e~m~~Lv~~ 270 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNE-EKMDALVEH 270 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCH-HHHHHHHHH
Confidence 777777764311111000 1111 256666666653 57788888999999998543 345555554
Q ss_pred hhc---------CCcchHHHHHHHHHHHHhccCch---hHHHHhhhccchHHHHHHHhcCCCHH
Q 000133 569 LTS---------DLPESKVYVLDALKSMLSVVSFS---DILREGSAANDAVETMIKILSSTKEE 620 (2100)
Q Consensus 569 L~~---------~~~~~~~~a~~aL~~l~~~~~~~---~~~~~~i~~~~~i~~Lv~lL~s~~~~ 620 (2100)
.+. ....--..-+++++.++.-.+.+ +.++..+.+.|.+...+++|...-|.
T Consensus 271 F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~ 334 (802)
T PF13764_consen 271 FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPS 334 (802)
T ss_pred HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcc
Confidence 332 11111123466777766643322 24555666666677677766544433
No 307
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.54 E-value=45 Score=44.71 Aligned_cols=218 Identities=14% Similarity=0.102 Sum_probs=131.8
Q ss_pred hccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHH-hh
Q 000133 492 ILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTAL-LT 570 (2100)
Q Consensus 492 lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~l-L~ 570 (2100)
.+.++...+|.++...|..+...- +....+..++++...++.+++.++-+--.|...+..||..-+...+|.+.+- ..
T Consensus 735 sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~e~Y~s 813 (982)
T KOG4653|consen 735 SLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLSEEYLS 813 (982)
T ss_pred HhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 344556677888888888888742 4455566788999999999998888877888877777766556677777663 22
Q ss_pred c---CCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcC
Q 000133 571 S---DLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVK 647 (2100)
Q Consensus 571 ~---~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g 647 (2100)
. ..++.+..+.+++..+...-+ ++..... +..+.......++++...|..++..++++|.-..-.... .-..
T Consensus 814 ~k~k~~~d~~lkVGEai~k~~qa~G--el~~~y~--~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd-~~~e 888 (982)
T KOG4653|consen 814 EKKKLQTDYRLKVGEAILKVAQALG--ELVFKYK--AVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSD-FFHE 888 (982)
T ss_pred cccCCCccceehHHHHHHHHHHHhc--cHHHHHH--HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhH-HHHH
Confidence 1 113556667788877654322 1111111 112444555566777788999999999998642211011 1112
Q ss_pred chHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCchhHHHH----HHhCCChHHHHHHhCCC-CHHHHHHHHHHHHHH
Q 000133 648 TLWSVMKLL-DVGSECILVEASRCLAAIFLSVRENREVA----AVARDALSPLVVLAGSP-VLEVAEQATCALANL 717 (2100)
Q Consensus 648 ~v~~Lv~lL-~~~~~~v~~~aa~aL~~L~~~~~~~~~~~----~~~~~~l~~Lv~ll~~~-~~evr~~aa~aL~~L 717 (2100)
++.-++.+. .+++.-+++.|+..+..+..+... +.. ....+....+.++.++. +..++..+..++..+
T Consensus 889 v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~--dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 889 VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGE--DLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred HHHHHHHHHccCCchhhHHHHHHHHHHHHhccch--hhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 344444444 466778999999999888766532 111 11234444555555543 333556666555544
No 308
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=82.42 E-value=1.3e+02 Score=40.51 Aligned_cols=161 Identities=14% Similarity=0.196 Sum_probs=96.7
Q ss_pred HHHHhCCcHHHHHHhhCCC--------CHHHHHHHHHHHHHhccCCcccHHHHHhc--------CChHHHHHhccCC---
Q 000133 436 RALQGREGIQLLISLLGLS--------SEQQQECSVALLCLLSNENDDSKWAITAA--------GGIPPLVQILESG--- 496 (2100)
Q Consensus 436 ~~i~~~g~i~~Lv~lL~s~--------~~~v~~~A~~aL~nLs~~~~~~~~~i~~~--------g~i~~Lv~lL~~~--- 496 (2100)
+.+.+.+++..++.+...+ ..++...|..+|+-+.+ .|..+.++... .||..++..-...
T Consensus 595 enflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~-iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i 673 (1516)
T KOG1832|consen 595 ENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTS-IPDIQKALAHATLSNNRAYDGIAIILDAANGSNSI 673 (1516)
T ss_pred HHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEe-cchHHHHHHHHHhhcccccCceEEEeecccccccc
Confidence 3455667777777776532 34566678888888875 67777766532 3666655543322
Q ss_pred -CHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhc--CChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCC
Q 000133 497 -SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKN--GSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDL 573 (2100)
Q Consensus 497 -~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~ 573 (2100)
+++++..|..+|-|+.+..|++|.... .-..+ ++++..- -.......+
T Consensus 674 ~Dpei~~~AL~vIincVc~pp~~r~s~i---------~~v~S~~g~~r~~l---------~~~~ks~~l----------- 724 (1516)
T KOG1832|consen 674 VDPEIIQPALNVIINCVCPPPTTRPSTI---------VAVGSQSGDRRIFL---------GAGTKSAKL----------- 724 (1516)
T ss_pred cCHHHHHHHHhhhheeecCCCCcchhhh---------hhccccCCCccccc---------cCCCchHHH-----------
Confidence 799999999999999887667664431 11122 2222110 000000000
Q ss_pred cchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCC-----CHHHHHHHHHHHHHHhcCChhhHHHHH
Q 000133 574 PESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSST-----KEETQAKSASALAGIFETRKDLRESSI 644 (2100)
Q Consensus 574 ~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~-----~~~~~~~Aa~aL~~L~~~~~~~~~~~~ 644 (2100)
++ .|. .....+...+||..|+++|.-. -+.+|.-||.+|..|+++ +..++.+.
T Consensus 725 ----e~---~l~----------~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~-~tVrQIlt 782 (1516)
T KOG1832|consen 725 ----EQ---VLR----------QMWEAVRGNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLARD-DTVRQILT 782 (1516)
T ss_pred ----HH---HHH----------HHHHHHhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccC-cHHHHHHH
Confidence 01 011 1234567788999999998643 356888999999999997 45555443
No 309
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=82.36 E-value=21 Score=48.00 Aligned_cols=149 Identities=12% Similarity=0.066 Sum_probs=106.4
Q ss_pred cchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHH
Q 000133 604 NDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENRE 683 (2100)
Q Consensus 604 ~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~ 683 (2100)
.+.+|.|++......-..+..-..+|.++-.+-|...-..-.....|.|++.|.-+|..++..+..++--+....+....
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence 45689999988766666677777888887765554333333445788899999988988888888888766543322221
Q ss_pred HHHHhCCChHHHHHHhCCCC---HHHHHHHHHHHHHHhcC-cHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHH
Q 000133 684 VAAVARDALSPLVVLAGSPV---LEVAEQATCALANLILD-SEVSEKAIAEEIILPATRVLCEGTISGKTLAAAA 754 (2100)
Q Consensus 684 ~~~~~~~~l~~Lv~ll~~~~---~evr~~aa~aL~~L~~~-~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~a 754 (2100)
. .-.-.+|.++.+-.+++ -.||+.|...|..|... |........++++.+|.+.|.+.-.-+|.+|+.+
T Consensus 946 ~--~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 946 E--HLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred H--HHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 1 11345677777766655 45889999999998863 5555556678999999999988888899998865
No 310
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=81.14 E-value=40 Score=42.79 Aligned_cols=156 Identities=13% Similarity=0.156 Sum_probs=111.7
Q ss_pred CchHHHHHHHhcCCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhhcCCCH----HHHHHHHHHHHHHhccCCCC
Q 000133 54 QAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSA----EGQIAAAKTIYAVSQGGAKD 129 (2100)
Q Consensus 54 g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~s~~~----~~~~~A~~aL~~Ls~~~~~~ 129 (2100)
.....+..++.+++...|..+...|.+++.+..--..+....++..|.++..+++. +....+..|+..+-..+.
T Consensus 83 ~~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-- 160 (713)
T KOG2999|consen 83 HYAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-- 160 (713)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce--
Confidence 34567889999999999999999999999888877788888889999999988765 445556666666655222
Q ss_pred cccccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHH
Q 000133 130 YVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLL 209 (2100)
Q Consensus 130 ~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L 209 (2100)
...+ .+....|-....+.+. ...+..+-..++..|-++....+.....+.+.--++.|+..++.++..++..|...+
T Consensus 161 -vsW~-~~~~~fV~~~a~~V~~-~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~ 237 (713)
T KOG2999|consen 161 -VSWE-SVSNDFVVSMASYVNA-KREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALL 237 (713)
T ss_pred -eeee-ecccHHHHHHHHHHhh-hhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHH
Confidence 1122 2223334444444422 233344555677888888877776777788889999999999999999998877777
Q ss_pred HHHhh
Q 000133 210 ACMME 214 (2100)
Q Consensus 210 ~~L~~ 214 (2100)
-.+..
T Consensus 238 nal~~ 242 (713)
T KOG2999|consen 238 NALFR 242 (713)
T ss_pred HHHHh
Confidence 55543
No 311
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=80.61 E-value=1.3e+02 Score=35.83 Aligned_cols=166 Identities=13% Similarity=0.178 Sum_probs=100.0
Q ss_pred CHHHHHHHHHHHHHHhcCCh-------hhHHHHHhCCcHHHHHHHhhcCC----hhHHHHHHHHHHHHhcCCCCCcHHHH
Q 000133 497 SAKAKEDSASILRNLCNHSE-------DIRACVESADAVPALLWLLKNGS----ANGKEIAAKTLNHLIHKSDTATISQL 565 (2100)
Q Consensus 497 ~~~vre~A~~aL~~L~~~~~-------~~~~~i~~~g~i~~Lv~lL~~~~----~~~~~~Aa~aL~~L~~~~~~~~i~~L 565 (2100)
+....+.+...|..|..... +.|-.+.=-+.+|.++.-+.+++ ......+|..|..+|.......+..+
T Consensus 75 Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~~La~i 154 (262)
T PF14225_consen 75 SSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLPNLARI 154 (262)
T ss_pred CCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCccHHHH
Confidence 44556777888888876421 12333333445688888887776 23455777889889865444445554
Q ss_pred HHHh-hcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 000133 566 TALL-TSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSI 644 (2100)
Q Consensus 566 ~~lL-~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~ 644 (2100)
+... +....+.......+...+.... .++ .....+-.|..+|.++.+.+|......|..+....+ .+. ..
T Consensus 155 l~~ya~~~fr~~~dfl~~v~~~l~~~f-~P~------~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d-~~~-~~ 225 (262)
T PF14225_consen 155 LSSYAKGRFRDKDDFLSQVVSYLREAF-FPD------HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVD-MRS-PH 225 (262)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHh-Cch------hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhcccc-CCC-Cc
Confidence 4443 3333333333333333332211 111 012336778889999999999999999999987643 322 24
Q ss_pred hcCchHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000133 645 AVKTLWSVMKLLDVGSECILVEASRCLAAI 674 (2100)
Q Consensus 645 ~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L 674 (2100)
.+..+.+|.++++++.- .+|...+-+.
T Consensus 226 ~~dlispllrlL~t~~~---~eAL~VLd~~ 252 (262)
T PF14225_consen 226 GADLISPLLRLLQTDLW---MEALEVLDEI 252 (262)
T ss_pred chHHHHHHHHHhCCccH---HHHHHHHHHH
Confidence 55689999999987663 4555555444
No 312
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=80.31 E-value=29 Score=47.52 Aligned_cols=176 Identities=14% Similarity=0.156 Sum_probs=120.9
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhC-CcHHHHHHh-hCCCCHHHHHHHHHHHHHhccCCcccHHHHHh
Q 000133 405 LVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGR-EGIQLLISL-LGLSSEQQQECSVALLCLLSNENDDSKWAITA 482 (2100)
Q Consensus 405 Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~-g~i~~Lv~l-L~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~ 482 (2100)
+-.-+.+.+..-|..|+..+........ ....... +-+..++.. +.+.+..+...++.+|..++...... ..-+.
T Consensus 258 l~t~~~s~~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~-~~~~~ 334 (815)
T KOG1820|consen 258 LETEMLSKKWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL-FRKYA 334 (815)
T ss_pred HHHhhhccchHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh-hHHHH
Confidence 3344557788888899988888777644 1111111 223344443 44667777888888888887644433 34445
Q ss_pred cCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC---
Q 000133 483 AGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT--- 559 (2100)
Q Consensus 483 ~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~--- 559 (2100)
.+..|.|+.-+.+....+++.+..++..++....- ....+.+...+++++|..+..+...+...-...++
T Consensus 335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~ 407 (815)
T KOG1820|consen 335 KNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV 407 (815)
T ss_pred HhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence 56789999999999999998877777776652221 23568888999999999998887777655443321
Q ss_pred ------CcHHHHHHHhhcCCcchHHHHHHHHHHHHhc
Q 000133 560 ------ATISQLTALLTSDLPESKVYVLDALKSMLSV 590 (2100)
Q Consensus 560 ------~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~ 590 (2100)
..+|.++....|.+.++|..+.++++.+..+
T Consensus 408 ~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 408 EKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred chhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence 4567777778899999999999999866543
No 313
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=80.29 E-value=43 Score=42.12 Aligned_cols=90 Identities=18% Similarity=0.262 Sum_probs=60.5
Q ss_pred HHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcC-CCHHHHHHHHHHH-HHhhccCccchHHHH
Q 000133 362 TLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITM-ATNEVQEELVRAL-LKLCNNEGSLWRALQ 439 (2100)
Q Consensus 362 ~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL-~~L~~~~~~~~~~i~ 439 (2100)
.+..=++++.+..+|+.++..|+.-..++..+..+...|..+.++..+.. ++..+...++-++ .-++.+ ......+.
T Consensus 25 ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d-~~~~~l~~ 103 (361)
T PF07814_consen 25 YLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRD-GLNMHLLL 103 (361)
T ss_pred HHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccC-Ccchhhhh
Confidence 34444456666678999988888888899999999999999999999853 3332444443444 444444 33333444
Q ss_pred hCCcHHHHHHhhC
Q 000133 440 GREGIQLLISLLG 452 (2100)
Q Consensus 440 ~~g~i~~Lv~lL~ 452 (2100)
+.+....++.+++
T Consensus 104 ~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 104 DRDSLRLLLKLLK 116 (361)
T ss_pred chhHHHHHHHHhc
Confidence 5556677788877
No 314
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=80.05 E-value=62 Score=40.75 Aligned_cols=93 Identities=22% Similarity=0.161 Sum_probs=57.5
Q ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHcc-CCHHHHHHHHHHHHHHhhcCcchh
Q 000133 142 VPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTL-GQSSTQAHVCFLLACMMEEDVSVC 220 (2100)
Q Consensus 142 vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s-~~~~v~~~a~~~L~~L~~~~~~~~ 220 (2100)
+..+++-+.+. ....++..+.--|..-|. ++.+++.++++|.+..+.+.+.. ++..+...++.++..+...+....
T Consensus 23 v~ylld~l~~~--~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~ 99 (361)
T PF07814_consen 23 VEYLLDGLESS--SSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNM 99 (361)
T ss_pred HHHHHhhcccC--CCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcch
Confidence 45566656522 223366556556666664 55888889999999999999954 444354444444444555444343
Q ss_pred hHHhhhchHHHHHHHhc
Q 000133 221 SRVLAADATKQLLKLLG 237 (2100)
Q Consensus 221 ~~i~~~g~i~~Lv~lL~ 237 (2100)
..+.+.+....+++++.
T Consensus 100 ~l~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 100 HLLLDRDSLRLLLKLLK 116 (361)
T ss_pred hhhhchhHHHHHHHHhc
Confidence 44445666777788877
No 315
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=79.91 E-value=19 Score=48.29 Aligned_cols=150 Identities=17% Similarity=0.147 Sum_probs=101.7
Q ss_pred cCcHHHHHHHhccCChhHHHHHHHHHHH-HHhccCCcccccccCchHHHHHHhccCCCCchhHhHHHHHHHHhhcCCCcc
Q 000133 1440 AGVIESVLDILHEAPDFLCSAFAELLRI-LTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCR 1518 (2100)
Q Consensus 1440 ~~~i~~lv~~L~~~~~~~~~~aa~lL~~-Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~~~~~~~~~A~~~L~nL~~~~~~~ 1518 (2100)
...++.++..+...+..++..--.+|-. |.+.+..-..+.....++-|+..+..+| .+++-.+..++-.+....+..
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D--~~v~vstl~~i~~~l~~~~tL 943 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPD--VIVRVSTLRTIPMLLTESETL 943 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCc--cchhhhHhhhhhHHHHhcccc
Confidence 4456666666665555555543333322 3344432222335667888888889888 888888888887765443333
Q ss_pred cccccccCCChHhhhhccCCCC---HHHHHHHHHHHHHhhc-cccccccccccCchHHHHHHhccCCHHHHHHHHHHHH
Q 000133 1519 ADYSLTSHQAIEPLIPLLDSPA---PAVQQLAAELLSHLLL-EEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALV 1593 (2100)
Q Consensus 1519 ~~~~~~~~~~l~~Lv~~L~~~~---~~vq~~a~~aL~~l~~-~~~~~~~l~~~g~i~~Lv~lL~s~~~~vr~~Al~AL~ 1593 (2100)
.. -.-...++.++.+=++.+ ..||+.|+..|+-+.. .|...-...+..++..|.+.|++...-+|+.|.++=.
T Consensus 944 ~t--~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 944 QT--EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred ch--HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence 22 133445666666655555 6899999999999988 6666666777789999999999999999999988643
No 316
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=79.21 E-value=37 Score=46.38 Aligned_cols=202 Identities=17% Similarity=0.181 Sum_probs=103.1
Q ss_pred hhHHHHHHHHHHHHccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhc----CCHHHHHHHHHHHHhh
Q 000133 6 GTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRS----GSLAVKIQAATVLGSL 81 (2100)
Q Consensus 6 ~~~~~v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~----~~~~v~~~aa~~L~~L 81 (2100)
||.+.|.-+.+.+....-++.+-...+..+....+... ...+..+..++++ .+..++..|.-.++.+
T Consensus 392 GT~~av~~i~~~I~~~~~~~~ea~~~l~~l~~~~~~Pt---------~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~l 462 (618)
T PF01347_consen 392 GTNPAVKFIKDLIKSKKLTDDEAAQLLASLPFHVRRPT---------EELLKELFELAKSPKVKNSPYLRETALLSLGSL 462 (618)
T ss_dssp -SHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHT--------------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCC---------HHHHHHHHHHHhCccccCChhHHHHHHHHHHHH
Confidence 45556666666665544444443344444444442222 1234445555553 3445666666666665
Q ss_pred h----ccc------hhhHHHHhcCChHHHHHhhc----CCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHH
Q 000133 82 C----KEN------ELRVKVLLGGCIPPLLGLLK----SSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWE 147 (2100)
Q Consensus 82 ~----~~~------~~~~~i~~~g~i~~Lv~lL~----s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~ 147 (2100)
. ... ..+........++.|...|. .++.+.+..+.+||+|+.. ...++.|..
T Consensus 463 v~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--------------~~~i~~l~~ 528 (618)
T PF01347_consen 463 VHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--------------PESIPVLLP 528 (618)
T ss_dssp HHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---------------GGGHHHHHT
T ss_pred hCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--------------chhhHHHHh
Confidence 4 221 01111222344666666665 4566778889999999986 125777777
Q ss_pred HhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHcc--CCHHHHHHHHHHHHHHhhcCcchhhHHhh
Q 000133 148 QLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTL--GQSSTQAHVCFLLACMMEEDVSVCSRVLA 225 (2100)
Q Consensus 148 lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s--~~~~v~~~a~~~L~~L~~~~~~~~~~i~~ 225 (2100)
.+......+..++..|.++|+.+....+... .+.+.++..+ .+.++|..|..+| +..++ .
T Consensus 529 ~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~l---m~~~P-------~ 590 (618)
T PF01347_consen 529 YIEGKEEVPHFIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLIL---MRCNP-------S 590 (618)
T ss_dssp TSTTSS-S-HHHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHH---HHT----------
T ss_pred HhhhccccchHHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHH---HhcCC-------C
Confidence 7776544556688888999998865443221 3467777765 4567777776555 23323 1
Q ss_pred hchHHHHHHHhcCCCCHHHHHHH
Q 000133 226 ADATKQLLKLLGSGNEASVRAEA 248 (2100)
Q Consensus 226 ~g~i~~Lv~lL~~~~~~~v~~~A 248 (2100)
...+..+...+...++..+..-.
T Consensus 591 ~~~l~~i~~~l~~E~~~QV~sfv 613 (618)
T PF01347_consen 591 PSVLQRIAQSLWNEPSNQVASFV 613 (618)
T ss_dssp HHHHHHHHHHHTT-S-HHHHHHH
T ss_pred HHHHHHHHHHHhhCchHHHHHHH
Confidence 23466677777765544444433
No 317
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=79.03 E-value=2.2 Score=43.48 Aligned_cols=80 Identities=16% Similarity=0.334 Sum_probs=56.3
Q ss_pred CcceEEEec---CCCCCccccccccCCCccccccceeccc---cCCCCC-----------eEEEEeecCCccCCc-----
Q 000133 1998 PSVYCKLTL---GNTPPRQTKIVSTGPNPEWEESFAWSFE---IPPKGQ-----------KLHISCKNKSKMGKS----- 2055 (2100)
Q Consensus 1998 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----------~~~~~~~~~~~~~~~----- 2055 (2100)
-|.++.+++ -++..|+|+.|.++-.|++++.|+|--. .++.|. .+.++++..++=+..
T Consensus 33 VN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~ 112 (143)
T cd08683 33 VNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIKI 112 (143)
T ss_pred cceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceecc
Confidence 346666663 4889999999999999999999887543 344444 567778775443222
Q ss_pred ------ccceEEEEEeeEEe-ecccccce
Q 000133 2056 ------SFGKVTIQIDRVVM-LGAVAGEY 2077 (2100)
Q Consensus 2056 ------~~~~~~~~~~~~~~-~~~~~~~~ 2077 (2100)
-+|.|+|++.+.+. ..-++|-|
T Consensus 113 ~~~~DilLG~v~IPl~~Ll~~rsGitGW~ 141 (143)
T cd08683 113 ETSGDILLGTVKIPLRDLLTKRSGITGWY 141 (143)
T ss_pred CcCCcEEEEEEEeeHHHHhhcccCccccc
Confidence 36999999988876 33355544
No 318
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=78.81 E-value=14 Score=41.73 Aligned_cols=94 Identities=12% Similarity=-0.013 Sum_probs=68.8
Q ss_pred chhHHHHHHHhh-----cCChhhHHHHHHHHHHHhcCcchHHHHHhhc--C--hHHHHHHHhcCCchHHHHHHHHHHHhc
Q 000133 1316 NAVDVLCRILSS-----NCSMELKGDAAELCGVLFGNTRIRSTVAAAR--C--VEPLVSLLVTEFSPAQHSVVRALDKLV 1386 (2100)
Q Consensus 1316 gal~~L~~lL~~-----~~~~~~~~~a~~~L~~L~~~~~~r~~~~~~~--~--i~~Lv~lL~~~~~~~~~~A~~aL~~L~ 1386 (2100)
..+..|++.+.. .+...--...+.+|.++++.+++|..+.... . +..|+....+.+...|..++.+|.|.|
T Consensus 52 ~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNcc 131 (192)
T PF04063_consen 52 FYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCC 131 (192)
T ss_pred HHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhh
Confidence 377888888876 2335667889999999999999999887543 3 677888888888889999999999999
Q ss_pred ccHHHHHHHHhc---CCHHHHHHhhc
Q 000133 1387 DDEQLAELVAAH---GAVIPLVGLLY 1409 (2100)
Q Consensus 1387 ~~~~~~~~~~~~---g~i~~L~~lL~ 1409 (2100)
.+...-.++... ++++.|+--|-
T Consensus 132 Fd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 132 FDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred ccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 644444555442 44555544443
No 319
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=78.43 E-value=5.4 Score=43.59 Aligned_cols=146 Identities=21% Similarity=0.183 Sum_probs=96.8
Q ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 000133 607 VETMIKILS--STKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREV 684 (2100)
Q Consensus 607 i~~Lv~lL~--s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~ 684 (2100)
+..++..|. ...+++|..+.-++..+- +..++. ...-.-..+...+...+.+....+..++..+....++..-.
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~-~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREE-FKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHH-HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHH-HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence 344555443 466778888888888874 222222 11122233333344333346788888899998888776666
Q ss_pred HHHhCCChHHHHHHhC--CCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCC-hh-HHHHHHHHHHH
Q 000133 685 AAVARDALSPLVVLAG--SPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGT-IS-GKTLAAAAIAR 757 (2100)
Q Consensus 685 ~~~~~~~l~~Lv~ll~--~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~-~~-~~~~Aa~aL~~ 757 (2100)
.+...|.++.+..++. ..+..++..++.+|. .++..+.+..++....+++|.+..+..+ +. +|..|+-+|+.
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~-aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLS-AACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHH-HHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHH-HHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 6888899999999998 666666666666554 3466777778888999999999996544 54 67777777654
No 320
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.36 E-value=2.9e+02 Score=38.31 Aligned_cols=129 Identities=18% Similarity=0.126 Sum_probs=85.4
Q ss_pred CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCC--CHHHHHHHHHHHHHHh---cC-----------c
Q 000133 658 VGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSP--VLEVAEQATCALANLI---LD-----------S 721 (2100)
Q Consensus 658 ~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~--~~evr~~aa~aL~~L~---~~-----------~ 721 (2100)
++++..++.|=+-|.++ .. ..|++..|.+++.+. ...||..|+.=+-|.+ ++ .
T Consensus 15 d~d~~~R~~AE~~L~q~-~K----------~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~ 83 (1010)
T KOG1991|consen 15 DSDAKERKAAEQQLNQL-EK----------QPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIP 83 (1010)
T ss_pred CCChHHHHHHHHHHHHh-hc----------CCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCC
Confidence 44577777777777665 22 368999999987654 3447899999999986 21 1
Q ss_pred HHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcccccchHhHHHHH
Q 000133 722 EVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDAL 801 (2100)
Q Consensus 722 ~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~~~~al~~L 801 (2100)
+..+..+.+.+++.++.. ++-+|.+-..+|..+..+.-.. +..|.+.-+-..|.+.+.... -.|+-.|
T Consensus 84 e~dk~~irenIl~~iv~~----p~~iRvql~~~l~~Ii~~D~p~-------~Wp~l~d~i~~~Lqs~~~~~v-y~aLl~l 151 (1010)
T KOG1991|consen 84 EEDKAVIRENILETIVQV----PELIRVQLTACLNTIIKADYPE-------QWPGLLDKIKNLLQSQDANHV-YGALLCL 151 (1010)
T ss_pred hHHHHHHHHHHHHHHHhC----chHHHHHHHHHHHHHHhcCCcc-------cchhHHHHHHHHhcCcchhhH-HHHHHHH
Confidence 344555666666666543 5557887778888888655443 334455555566666554444 7888888
Q ss_pred HHHHHcCC
Q 000133 802 AILSRSGG 809 (2100)
Q Consensus 802 ~~L~~~~~ 809 (2100)
..|.+..+
T Consensus 152 ~qL~k~ye 159 (1010)
T KOG1991|consen 152 YQLFKTYE 159 (1010)
T ss_pred HHHHHHHh
Confidence 88877665
No 321
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=77.92 E-value=67 Score=39.44 Aligned_cols=101 Identities=13% Similarity=-0.042 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccC----C-HHHHHHHHHHHHHHhhcCcchhhHH-hhhchHHH
Q 000133 158 VVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLG----Q-SSTQAHVCFLLACMMEEDVSVCSRV-LAADATKQ 231 (2100)
Q Consensus 158 ~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~----~-~~v~~~a~~~L~~L~~~~~~~~~~i-~~~g~i~~ 231 (2100)
.+-..+..||+|+....+..+....+......+++.+... . -+++..-.++|.-+..-..+.+.++ .+.+|++.
T Consensus 112 ~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~ 191 (532)
T KOG4464|consen 112 HVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLEL 191 (532)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHH
Confidence 3555678999999988887777778887777777766432 1 1344455555544444444555555 66789999
Q ss_pred HHHHhcCC---------C-----CHHHHHHHHHHHHHhhcC
Q 000133 232 LLKLLGSG---------N-----EASVRAEAAGALKSLSDH 258 (2100)
Q Consensus 232 Lv~lL~~~---------~-----~~~v~~~Aa~aL~~Ls~~ 258 (2100)
+-+.+... + +.+.-.++..++.|++.+
T Consensus 192 lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~ 232 (532)
T KOG4464|consen 192 LTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCD 232 (532)
T ss_pred HHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeec
Confidence 98888532 1 123445566677777764
No 322
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=77.15 E-value=1.6e+02 Score=34.79 Aligned_cols=200 Identities=14% Similarity=0.124 Sum_probs=123.0
Q ss_pred CHHHHHHHHHHHHHhhccCccchHHHHhC-CcHHHHHHh-------hCCCC--H---HHHHHHHHHHHHhccCCcccHHH
Q 000133 413 TNEVQEELVRALLKLCNNEGSLWRALQGR-EGIQLLISL-------LGLSS--E---QQQECSVALLCLLSNENDDSKWA 479 (2100)
Q Consensus 413 ~~~v~~~A~~aL~~L~~~~~~~~~~i~~~-g~i~~Lv~l-------L~s~~--~---~v~~~A~~aL~nLs~~~~~~~~~ 479 (2100)
+++.|+.|..-|..--...++..-.+... |.+..|++= +..++ . .-...|...|.-+++ +++.+..
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~ 86 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMP 86 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHH
Confidence 66778777666655444434444455544 445555432 22221 2 122335555566675 8999999
Q ss_pred HHhcCChHHHHHhccCC-----CHHHHHHHHHHHHHHhcC-ChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHH
Q 000133 480 ITAAGGIPPLVQILESG-----SAKAKEDSASILRNLCNH-SEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHL 553 (2100)
Q Consensus 480 i~~~g~i~~Lv~lL~~~-----~~~vre~A~~aL~~L~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L 553 (2100)
+.++...--|.-+|+.. -+..|-.+..+++.|... +++.-..+.....+|..++.++.|+.-.|..|...+.++
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI 166 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 99998876677777644 256788889999999863 335556677789999999999999999999999999888
Q ss_pred hcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHH-HhcCCCHHHHHHHHHHHHHH
Q 000133 554 IHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIK-ILSSTKEETQAKSASALAGI 632 (2100)
Q Consensus 554 ~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~-lL~s~~~~~~~~Aa~aL~~L 632 (2100)
-.++.. +.++...++.+... ...+..++. +.+.+++.+-+...+|-..|
T Consensus 167 L~dd~G---------------------------L~yiC~t~eRf~av---~~vL~~mV~~l~~~pS~RLLKhIIrCYlRL 216 (262)
T PF04078_consen 167 LLDDVG---------------------------LNYICQTAERFFAV---AMVLNKMVEQLVKQPSPRLLKHIIRCYLRL 216 (262)
T ss_dssp HHSHHH---------------------------HHHHTSSHHHHHHH---HHHHHHHHHHHHHS--HHHHHHHHHHHHHH
T ss_pred HcchhH---------------------------HHHHhcCHHHHHHH---HHHHHHHHHHHccCCChhHHHHHHHHHHHH
Confidence 553210 11222222211111 112444444 45778999999999999999
Q ss_pred hcCChhhHHHHH
Q 000133 633 FETRKDLRESSI 644 (2100)
Q Consensus 633 ~~~~~~~~~~~~ 644 (2100)
+.+ +..++++.
T Consensus 217 sdn-prar~aL~ 227 (262)
T PF04078_consen 217 SDN-PRAREALR 227 (262)
T ss_dssp TTS-TTHHHHHH
T ss_pred ccC-HHHHHHHH
Confidence 987 56666554
No 323
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=77.06 E-value=36 Score=38.03 Aligned_cols=108 Identities=22% Similarity=0.261 Sum_probs=73.7
Q ss_pred HHHHH-HhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcC---------------ch----HHHHHhh-cCCCHHHHHH
Q 000133 608 ETMIK-ILSSTKEETQAKSASALAGIFETRKDLRESSIAVK---------------TL----WSVMKLL-DVGSECILVE 666 (2100)
Q Consensus 608 ~~Lv~-lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g---------------~v----~~Lv~lL-~~~~~~v~~~ 666 (2100)
+.|.. ++.++++.+|..|+.+|..|-.+.+.+.....+.. .+ ..|+..+ .+.+..+..+
T Consensus 42 ~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q 121 (182)
T PF13251_consen 42 PSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQ 121 (182)
T ss_pred cchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHH
Confidence 33444 66888999999999999998887665443332111 22 2334444 4556778899
Q ss_pred HHHHHHHHhcCCchhHHHHHHhCCChH----HHHHHhCCCCHHHHHHHHHHHHHHhc
Q 000133 667 ASRCLAAIFLSVRENREVAAVARDALS----PLVVLAGSPVLEVAEQATCALANLIL 719 (2100)
Q Consensus 667 aa~aL~~L~~~~~~~~~~~~~~~~~l~----~Lv~ll~~~~~evr~~aa~aL~~L~~ 719 (2100)
...++..+....+..+- ..|.++ .+..++.+.+++++..+..+++.+..
T Consensus 122 ~lK~la~Lv~~tPY~rL----~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 122 LLKCLAVLVQATPYHRL----PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred HHHHHHHHHccCChhhc----CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 99999999887765321 234444 44467788999999999999998873
No 324
>PLN02964 phosphatidylserine decarboxylase
Probab=76.53 E-value=1.6 Score=57.64 Aligned_cols=117 Identities=15% Similarity=0.217 Sum_probs=87.8
Q ss_pred chhHHHHHHHHhhcCCCceeeeeccchhhhhhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEE
Q 000133 1964 PRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLH 2043 (2100)
Q Consensus 1964 ~~~~~~a~~~le~i~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2043 (2100)
.....|++. -|.|.|...+|+---+ | .+ .+.-|..+++| .++=.|-+-+|..+|+||+...+-++.-..+= .+
T Consensus 40 ~~~~~~~~~-~~~~~~~~~~~~~~~~-~--~~-~~~~~~~~~~g-~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~-~~ 112 (644)
T PLN02964 40 GSVSQRAVS-AEDFSGIALLTLVGAE-M--KF-KDKWLACVSFG-EQTFRTETSDSTDKPVWNSEKKLLLEKNGPHL-AR 112 (644)
T ss_pred cccccccee-cccccCeEEEEeehhh-h--cc-CCcEEEEEEec-ceeeeeccccccCCcccchhhceEeccCCcce-EE
Confidence 445566664 4788898888885332 2 22 25667788897 45566889999999999999998888444444 59
Q ss_pred EEeecCCccCCccc-ceEEEEEeeEEe--ecccccceeecCCCCCCC
Q 000133 2044 ISCKNKSKMGKSSF-GKVTIQIDRVVM--LGAVAGEYTLLPESKSGP 2087 (2100)
Q Consensus 2044 ~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 2087 (2100)
+.+++++.|.++.+ |+|.+.+.+... ...+...|.+...+++|.
T Consensus 113 ~~~~~~~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~ 159 (644)
T PLN02964 113 ISVFETNRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSSNK 159 (644)
T ss_pred EEEEecCCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCCc
Confidence 99999999999888 999998888877 455777788854477775
No 325
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=76.43 E-value=1.8e+02 Score=34.95 Aligned_cols=202 Identities=12% Similarity=0.148 Sum_probs=140.6
Q ss_pred hhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhh----HHHH-HhcCchHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000133 600 GSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDL----RESS-IAVKTLWSVMKLLDVGSECILVEASRCLAAI 674 (2100)
Q Consensus 600 ~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~----~~~~-~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L 674 (2100)
.+.+++..+.|+.-+....-+.+..+.....++-+..-.. .+-+ .....+..|++.-.. .+++...+-..+..-
T Consensus 74 ef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrEc 152 (342)
T KOG1566|consen 74 EFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLREC 152 (342)
T ss_pred HHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHHH
Confidence 4556677888999998888899999998888886542211 1111 122355555555222 355555444444433
Q ss_pred hcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcC-cHHHHHHHHcCc----HHHHHHHHccCChhHHH
Q 000133 675 FLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD-SEVSEKAIAEEI----ILPATRVLCEGTISGKT 749 (2100)
Q Consensus 675 ~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~-~~~~~~~v~~~~----v~~L~~ll~~~~~~~~~ 749 (2100)
.++ ...++. +....-+......+..++-++...|..+...++.+ .....++....- .+.-.+++++++--+++
T Consensus 153 irh-e~Laki-iL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkr 230 (342)
T KOG1566|consen 153 IRH-EFLAKI-ILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKR 230 (342)
T ss_pred Hhh-HHHHHH-HHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHH
Confidence 232 234555 67777888888888889889999999999988843 445555554333 22355677777777899
Q ss_pred HHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcccccchHhHHHHHHHHH
Q 000133 750 LAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILS 805 (2100)
Q Consensus 750 ~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~~~~al~~L~~L~ 805 (2100)
++...|..++-+.++...+..|+.....+.-+..++...+..+. .+|..++--+-
T Consensus 231 qs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ-~eAFhvFKvfv 285 (342)
T KOG1566|consen 231 QSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQ-LEAFHVFKVFV 285 (342)
T ss_pred HHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccch-HHHHHHHHHHh
Confidence 99999999999999998999988888888888888888877777 77777766553
No 326
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=76.08 E-value=38 Score=45.80 Aligned_cols=200 Identities=17% Similarity=0.125 Sum_probs=110.1
Q ss_pred hhHHHHHHHHHHHHccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhcC----CHHHHHHHHHHHHhh
Q 000133 6 GTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSG----SLAVKIQAATVLGSL 81 (2100)
Q Consensus 6 ~~~~~v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~~----~~~v~~~aa~~L~~L 81 (2100)
||.+.+.-+.+.++...-++.+...++..+........ ...+..+..++.++ ...++..+.-.++.+
T Consensus 354 GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt---------~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~l 424 (574)
T smart00638 354 GTPPALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPT---------EEILKALFELAESPEVQKQPYLRESALLAYGSL 424 (574)
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCC---------HHHHHHHHHHhcCccccccHHHHHHHHHHHHHH
Confidence 45566666666666655555455555555555543332 12455666666653 234555555555554
Q ss_pred h----ccchhhHHHHhcCChHHHHHhhc----CCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccC
Q 000133 82 C----KENELRVKVLLGGCIPPLLGLLK----SSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGL 153 (2100)
Q Consensus 82 ~----~~~~~~~~i~~~g~i~~Lv~lL~----s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~ 153 (2100)
. .+.+.+........++.+...|. .++.+.+..+.+||+|+... ..++.+...+....
T Consensus 425 v~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~--------------~~i~~l~~~l~~~~ 490 (574)
T smart00638 425 VRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHP--------------SSIKVLEPYLEGAE 490 (574)
T ss_pred HHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCCh--------------hHHHHHHHhcCCCC
Confidence 4 23322111222345666776664 34555566778888887761 23556666665333
Q ss_pred CCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHcc--CCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHH
Q 000133 154 KSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTL--GQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQ 231 (2100)
Q Consensus 154 ~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s--~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~ 231 (2100)
.....++..|.++|+.++...+.. .-+.+.++..+ .++++|..|..+| +..++ ....+..
T Consensus 491 ~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~EvRiaA~~~l---m~t~P-------~~~~l~~ 552 (574)
T smart00638 491 PLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEVRMAAVLVL---METKP-------SVALLQR 552 (574)
T ss_pred CCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHHHHHHHHHH---HhcCC-------CHHHHHH
Confidence 344558888999999886433222 13456666655 4567787777665 22223 1233566
Q ss_pred HHHHhcCCCCHHHHH
Q 000133 232 LLKLLGSGNEASVRA 246 (2100)
Q Consensus 232 Lv~lL~~~~~~~v~~ 246 (2100)
+...+....+..++.
T Consensus 553 ia~~l~~E~~~QV~s 567 (574)
T smart00638 553 IAELLNKEPNLQVAS 567 (574)
T ss_pred HHHHHhhcCcHHHHH
Confidence 666666655444433
No 327
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=75.21 E-value=36 Score=43.15 Aligned_cols=152 Identities=16% Similarity=0.204 Sum_probs=110.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCH----HHHHHHHHHHHHhccCCcccH
Q 000133 402 KRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSE----QQQECSVALLCLLSNENDDSK 477 (2100)
Q Consensus 402 i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~----~v~~~A~~aL~nLs~~~~~~~ 477 (2100)
...+.+.+.+++...|..+..-|..++.+ ....+.++...|+..|..++.+++. ++......+++.+-.+.. ..
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vs 162 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VS 162 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-ee
Confidence 45577788888888888899999999887 6677888899999999999988754 444455566666543222 33
Q ss_pred HHHHhcCChHHHHHhccC--CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhc
Q 000133 478 WAITAAGGIPPLVQILES--GSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIH 555 (2100)
Q Consensus 478 ~~i~~~g~i~~Lv~lL~~--~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~ 555 (2100)
+......+|.....+..- .+..+-..|...|.++...++..+..+.++--+..|+..++.++..++..|...+-.|-.
T Consensus 163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 333333344444444432 245667788899999988777788888888899999999999999988886666655544
No 328
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=74.11 E-value=1e+02 Score=36.20 Aligned_cols=133 Identities=24% Similarity=0.262 Sum_probs=87.1
Q ss_pred hhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChH
Q 000133 408 LITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIP 487 (2100)
Q Consensus 408 lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~ 487 (2100)
+-+..+++.+....++|..++.++... ..-.++.|..+.+.++...+.-+...+..+-..++..- +.+.
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~~~-----~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f------~~L~ 77 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKNVC-----VPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF------PFLQ 77 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCccc-----hhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH------HHHH
Confidence 445678999999999999999985111 11235666677777777776667777777764333211 2333
Q ss_pred HHHHh--------ccCC--CHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHh-hcCChhHHHHHHHHHHHHhcC
Q 000133 488 PLVQI--------LESG--SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLL-KNGSANGKEIAAKTLNHLIHK 556 (2100)
Q Consensus 488 ~Lv~l--------L~~~--~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~Aa~aL~~L~~~ 556 (2100)
.++.. ..++ ..+..-..+..+..+|...|+ +. ...++.+..++ ++.++.++..+..+|..||..
T Consensus 78 ~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-~g----~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~ 152 (234)
T PF12530_consen 78 PLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-HG----VDLLPLLSGCLNQSCDEVAQALALEALAPLCEA 152 (234)
T ss_pred HHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-hH----HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 33333 1111 334444556788889887666 21 23678888899 788888999999999999853
No 329
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=73.94 E-value=10 Score=37.12 Aligned_cols=71 Identities=15% Similarity=0.027 Sum_probs=57.4
Q ss_pred hHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCc
Q 000133 692 LSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRK 763 (2100)
Q Consensus 692 l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~ 763 (2100)
+...+..+.++.+.+|.+|...|..|+...+ ....-.+.++..+...++++++.+=.+|.++|..+....+
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence 4455677889999999999999999996655 2222246888889999999999999999999999986655
No 330
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=73.84 E-value=1.3e+02 Score=38.66 Aligned_cols=173 Identities=16% Similarity=0.108 Sum_probs=110.8
Q ss_pred CcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcC--ChhhH
Q 000133 442 EGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNH--SEDIR 519 (2100)
Q Consensus 442 g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~--~~~~~ 519 (2100)
|.+..+++-+.+++..++..++..|.-++. ...........|-+..|.+-+-+..+.+|..|+.+|+.+-.. +++++
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d-~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~ 169 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSD-VVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENR 169 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHH
Confidence 667788888899999999999999998874 444444555566677777766677889999999999998753 33333
Q ss_pred HHHHhCCcHHHHHHHhhc-CChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHH-HHHHHHHHHhccCchhHH
Q 000133 520 ACVESADAVPALLWLLKN-GSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVY-VLDALKSMLSVVSFSDIL 597 (2100)
Q Consensus 520 ~~i~~~g~i~~Lv~lL~~-~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~-a~~aL~~l~~~~~~~~~~ 597 (2100)
....|+.++++ ++.+++.. +|.|+.. ++.+.|.+++--++-+...|.- -.++|-.++...... +
T Consensus 170 -------~~n~l~~~vqnDPS~EVRr~---allni~v--dnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~ls--i 235 (885)
T COG5218 170 -------IVNLLKDIVQNDPSDEVRRL---ALLNISV--DNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLS--I 235 (885)
T ss_pred -------HHHHHHHHHhcCcHHHHHHH---HHHHeee--CCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhcc--c
Confidence 33466777775 56667764 3555544 3456777777666655443322 234444332221110 0
Q ss_pred HHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 000133 598 REGSAANDAVETMIKILSSTKEETQAKSASALAGIFET 635 (2100)
Q Consensus 598 ~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~ 635 (2100)
. +-|..+-+-+.+....++.+++.+++.--..
T Consensus 236 ~------kri~l~ewgl~dRe~sv~~a~~d~ia~~w~~ 267 (885)
T COG5218 236 D------KRILLMEWGLLDREFSVKGALVDAIASAWRI 267 (885)
T ss_pred c------ceehhhhhcchhhhhhHHHHHHHHHHHHhcc
Confidence 0 1133455567777888888888888765444
No 331
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.59 E-value=3.6e+02 Score=37.08 Aligned_cols=293 Identities=19% Similarity=0.193 Sum_probs=159.8
Q ss_pred HHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCC-----
Q 000133 166 ALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGN----- 240 (2100)
Q Consensus 166 aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~----- 240 (2100)
+|..+...+.++.+...++.|+..++.++ -+++.|....+++.+|...++.. +...-+-.++..|+++-
T Consensus 665 cLisllKnnteNqklFreanGvklilpfl--indehRSslLrivscLitvdpkq----vhhqelmalVdtLksgmvt~Is 738 (2799)
T KOG1788|consen 665 CLISLLKNNTENQKLFREANGVKLILPFL--INDEHRSSLLRIVSCLITVDPKQ----VHHQELMALVDTLKSGMVTRIS 738 (2799)
T ss_pred HHHHHHhccchhhHHHHhhcCceEEEEee--echHHHHHHHHHHHHHhccCccc----ccHHHHHHHHHHHHhcceeccc
Confidence 45555555566667678888888888877 56778888888888888665531 23344567777776621
Q ss_pred --C----HHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchh
Q 000133 241 --E----ASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVI 314 (2100)
Q Consensus 241 --~----~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i 314 (2100)
. -+....-.+++|.+-.-+-..+..+.+++|...|...|..-.+ +.. +
T Consensus 739 geqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqg-fte------l------------------- 792 (2799)
T KOG1788|consen 739 GEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQG-FTE------L------------------- 792 (2799)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhcc-chh------c-------------------
Confidence 1 1345555678888876666788889999999988887754221 000 0
Q ss_pred hhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccch
Q 000133 315 SSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSI 394 (2100)
Q Consensus 315 ~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~ 394 (2100)
.+. .| +-..+ .+..++.+++. .....++.++.
T Consensus 793 --------hde-----sD----lcvyi----------------klfkilFrlfT---------------lavcenasNrm 824 (2799)
T KOG1788|consen 793 --------HDE-----SD----LCVYI----------------KLFKILFRLFT---------------LAVCENASNRM 824 (2799)
T ss_pred --------CCc-----hh----hhhHH----------------HHHHHHHHHHH---------------HHHhhcchhhh
Confidence 000 00 00000 01111111110 01123455555
Q ss_pred hhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhcc---
Q 000133 395 KLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSN--- 471 (2100)
Q Consensus 395 ~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~--- 471 (2100)
++...-....+..+|.... -||.+-....-.....-+++.++ .+.-.-...|+.-+..+-.
T Consensus 825 klhtvITsqtftsLLresg------------llcvnler~viqlllElalevlv----ppfLtSEsaAcaeVfelednif 888 (2799)
T KOG1788|consen 825 KLHTVITSQTFTSLLRESG------------LLCVNLERHVIQLLLELALEVLV----PPFLTSESAACAEVFELEDNIF 888 (2799)
T ss_pred heeeeeeHHHHHHHHHHhc------------cceecchHHHHHHHHHHHHHhhC----CchhhhhHHHHHHHhhccccee
Confidence 5444323333333332111 01111000000000001111111 1111111223333332211
Q ss_pred ------C-CcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhc---CChh
Q 000133 472 ------E-NDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKN---GSAN 541 (2100)
Q Consensus 472 ------~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~---~~~~ 541 (2100)
+ .....+.|+.+|++..|++.+-...++.+-.-...+..++..++.+.......|.++.|+++..- ++..
T Consensus 889 avntPsGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgssp 968 (2799)
T KOG1788|consen 889 AVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSP 968 (2799)
T ss_pred eeccCCCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCch
Confidence 0 11247789999999999999888899999999999999999999999998899999998887643 4444
Q ss_pred HHHHHHHHHHHHh
Q 000133 542 GKEIAAKTLNHLI 554 (2100)
Q Consensus 542 ~~~~Aa~aL~~L~ 554 (2100)
....+..++.-|+
T Consensus 969 fLshalkIvemLg 981 (2799)
T KOG1788|consen 969 FLSHALKIVEMLG 981 (2799)
T ss_pred HhhccHHHHHHHh
Confidence 4444444444443
No 332
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=72.88 E-value=64 Score=44.46 Aligned_cols=185 Identities=17% Similarity=0.176 Sum_probs=121.6
Q ss_pred CchHHHHHHhccCCCCchhHhHHHHHHHHhhcCCCcccccccccCCChHhhhhc-cCCCCHHHHHHHHHHHHHhhcc--c
Q 000133 1482 KVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPL-LDSPAPAVQQLAAELLSHLLLE--E 1558 (2100)
Q Consensus 1482 ~~v~~Ll~ll~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~~~~~~~~l~~Lv~~-L~~~~~~vq~~a~~aL~~l~~~--~ 1558 (2100)
+....+-..+.+++ +..+..|++.+...++... ........+.+..++.. +++.+..+-..++..|..++.. .
T Consensus 253 ki~~~l~t~~~s~~--WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~ 328 (815)
T KOG1820|consen 253 KITKNLETEMLSKK--WKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRP 328 (815)
T ss_pred hcChHHHHhhhccc--hHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcch
Confidence 34555555666655 8888889998888776655 12212344555565554 4577888888899999988652 2
Q ss_pred cccccccccCchHHHHHHhccCCHHHHHHHHHHHHHhhcCChh-HHHhccChHHHHHHhcccCCCchHHHHHHHHHHHHh
Q 000133 1559 QLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPN-EIAKEGGVTELSKIILQADPSLPHALWESAASVLSS 1637 (2100)
Q Consensus 1559 ~~~~~l~~~g~i~~Lv~lL~s~~~~vr~~Al~AL~~Ls~~~~n-~l~~~G~i~~Ll~lL~~~~~~~~~~l~e~a~~~L~~ 1637 (2100)
.++.. ..++.+.|..-+......++..+.+|+..+....+. .+. +..+..+....++.+...+.....-+..
T Consensus 329 ~~~~~--~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~-----~~I~e~lk~knp~~k~~~~~~l~r~~~~ 401 (815)
T KOG1820|consen 329 LFRKY--AKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMS-----EAILEALKGKNPQIKGECLLLLDRKLRK 401 (815)
T ss_pred hhHHH--HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHH-----HHHHHHhcCCChhhHHHHHHHHHHHHhh
Confidence 22222 235668888889999999999999999999886544 233 3455667766766666655534444443
Q ss_pred hhc-ccchhhhcccHHHHHHHhhcCCHHHHHHHHHHHHHhc
Q 000133 1638 ILQ-FSSEFYLEVPVAVLVRLLRSGSEGTVIGSLNALLVLE 1677 (2100)
Q Consensus 1638 i~~-~~~~~~~~~~v~~Lv~ll~~~~~~~~~~a~~aL~~L~ 1677 (2100)
+-. .....-.+..++.++...++.+.++|.++.+++..+.
T Consensus 402 ~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 402 LGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred cCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 321 1111112346788888888999999999999998553
No 333
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=72.32 E-value=28 Score=47.60 Aligned_cols=176 Identities=16% Similarity=0.141 Sum_probs=99.8
Q ss_pred ChhHHHHHHHHHHHhhcCCchhhHHHHhcCcHHHHHHHhccCChhHHHHHHHHHHHHHhccCCcccccccCchHHHHHHh
Q 000133 1412 NYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLL 1491 (2100)
Q Consensus 1412 ~~~vr~~A~~aL~~La~~~~~~k~~i~~~~~i~~lv~~L~~~~~~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll 1491 (2100)
....|.--+.+|...++.. ++..+.+.+........ .++.++..|........ ...+..++.++
T Consensus 377 ~~~~r~~~lDal~~aGT~~-----------av~~i~~~I~~~~~~~~-ea~~~l~~l~~~~~~Pt----~e~l~~l~~L~ 440 (618)
T PF01347_consen 377 KEQARKIFLDALPQAGTNP-----------AVKFIKDLIKSKKLTDD-EAAQLLASLPFHVRRPT----EELLKELFELA 440 (618)
T ss_dssp -HHHHHHHHHHHHHH-SHH-----------HHHHHHHHHHTT-S-HH-HHHHHHHHHHHT---------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHcCCCCHH-HHHHHHHHHHhhcCCCC----HHHHHHHHHHH
Confidence 4566777778888877774 67777777766433322 34445555554332111 12355566666
Q ss_pred ccCC--CCchhHhHHHHHHHHhhcCCCcc--------cccccccCCChHhhhhccC----CCCHHHHHHHHHHHHHhhcc
Q 000133 1492 TRSE--FGPDGQHSALQVLVNILEHPQCR--------ADYSLTSHQAIEPLIPLLD----SPAPAVQQLAAELLSHLLLE 1557 (2100)
Q Consensus 1492 ~~~~--~~~~~~~~A~~~L~nL~~~~~~~--------~~~~~~~~~~l~~Lv~~L~----~~~~~vq~~a~~aL~~l~~~ 1557 (2100)
.++. ..+.....|.-+++.+....-.. .........+++.|...|. .++.+-+..++.+|||+...
T Consensus 441 ~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~ 520 (618)
T PF01347_consen 441 KSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP 520 (618)
T ss_dssp T-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G
T ss_pred hCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc
Confidence 5432 33556667777777774321000 0111123345556665554 56778999999999999863
Q ss_pred ccccccccccCchHHHHHHhccC---CHHHHHHHHHHHHHhhcCChhHHHhccChHHHHHHhcc
Q 000133 1558 EQLQKDPVTQQVIGPLIRVLGSG---IHILQQRAVKALVSIALTWPNEIAKEGGVTELSKIILQ 1618 (2100)
Q Consensus 1558 ~~~~~~l~~~g~i~~Lv~lL~s~---~~~vr~~Al~AL~~Ls~~~~n~l~~~G~i~~Ll~lL~~ 1618 (2100)
..++.|...+.+. ...+|..|+.||.++....++.+ .+.|+.+..+
T Consensus 521 ----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v-----~~~l~~I~~n 569 (618)
T PF01347_consen 521 ----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKV-----REILLPIFMN 569 (618)
T ss_dssp ----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHH-----HHHHHHHHH-
T ss_pred ----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHH-----HHHHHHHhcC
Confidence 4567777777655 78999999999999987775432 2445666665
No 334
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=72.14 E-value=2.8e+02 Score=35.90 Aligned_cols=171 Identities=11% Similarity=0.026 Sum_probs=98.0
Q ss_pred ChHHHHHHHhcCCchHHHHHHHHHHHhcccHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCchhhHHHH
Q 000133 1359 CVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMV 1438 (2100)
Q Consensus 1359 ~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k~~i~ 1438 (2100)
.+..++..+.+.+..+|..++..|..+.+.-.-.+.....|.+.+|.+-+-+..+.||+.|+.+|+.+-.....-...
T Consensus 92 ~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~-- 169 (885)
T COG5218 92 TFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENR-- 169 (885)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHH--
Confidence 445566667788999999999999998853222233446678888888888999999999999999887553221111
Q ss_pred hcCcHHHHHHHhccC-ChhHHHHHHHHHHHHHhccCCcccccccCchHHHHHHhccCCCCchhHhH-HHHHHHHhhcCCC
Q 000133 1439 KAGVIESVLDILHEA-PDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHS-ALQVLVNILEHPQ 1516 (2100)
Q Consensus 1439 ~~~~i~~lv~~L~~~-~~~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~~~~~~~~~-A~~~L~nL~~~~~ 1516 (2100)
....++.++..+ ++++|..+ +.+++.... ..|.++.--.+-+ ...++- -..+|-.+.
T Consensus 170 ---~~n~l~~~vqnDPS~EVRr~a---llni~vdns---------T~p~IlERarDv~--~anRr~vY~r~Lp~iG---- 228 (885)
T COG5218 170 ---IVNLLKDIVQNDPSDEVRRLA---LLNISVDNS---------TYPCILERARDVS--GANRRMVYERCLPRIG---- 228 (885)
T ss_pred ---HHHHHHHHHhcCcHHHHHHHH---HHHeeeCCC---------cchhHHHHhhhhh--HHHHHHHHHHHhhhhc----
Confidence 233556666544 55566543 334443333 3466555444322 222221 122332220
Q ss_pred cccccccccCCChHhhhhccCCCCHHHHHHHHHHHHHh
Q 000133 1517 CRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHL 1554 (2100)
Q Consensus 1517 ~~~~~~~~~~~~l~~Lv~~L~~~~~~vq~~a~~aL~~l 1554 (2100)
....+ ..+..++ .+---|.+.+..++-+++.++..-
T Consensus 229 d~~~l-si~kri~-l~ewgl~dRe~sv~~a~~d~ia~~ 264 (885)
T COG5218 229 DLKSL-SIDKRIL-LMEWGLLDREFSVKGALVDAIASA 264 (885)
T ss_pred chhhc-cccceeh-hhhhcchhhhhhHHHHHHHHHHHH
Confidence 00000 0111122 222235677888888888888764
No 335
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=72.05 E-value=10 Score=49.57 Aligned_cols=224 Identities=13% Similarity=0.110 Sum_probs=142.3
Q ss_pred ccchHHHHhCCcHHHHHHhhCCCC--HHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHH
Q 000133 432 GSLWRALQGREGIQLLISLLGLSS--EQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILR 509 (2100)
Q Consensus 432 ~~~~~~i~~~g~i~~Lv~lL~s~~--~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~ 509 (2100)
+...+.++....++.|+..+...+ .++... ...+..... ..+ +..+.+|.|+++++..+..+|-.-+.-+-
T Consensus 283 ~~~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltp-l~k~~k~ld-~~e-----yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~ 355 (690)
T KOG1243|consen 283 DNFPEEIIASKVLPILLAALEFGDAASDFLTP-LFKLGKDLD-EEE-----YQVRIIPVLLKLFKSPDRQIRLLLLQYIE 355 (690)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccccchhhhhH-HHHhhhhcc-ccc-----cccchhhhHHHHhcCcchHHHHHHHHhHH
Confidence 344455666677777777776554 111111 111222211 122 66779999999999999999986555554
Q ss_pred HHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC-----CcHHHHHHHhhcCCcchHHHHHHHH
Q 000133 510 NLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT-----ATISQLTALLTSDLPESKVYVLDAL 584 (2100)
Q Consensus 510 ~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~-----~~i~~L~~lL~~~~~~~~~~a~~aL 584 (2100)
+... .....+++..+.|.+...+.+.++-+++.+...+..|+..-.. +.+..+-.+-.|++.++|.+...||
T Consensus 356 ~~i~---~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~~~irtntticl 432 (690)
T KOG1243|consen 356 KYID---HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEHGGIRTNTTICL 432 (690)
T ss_pred HHhh---hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccccCcccccceeee
Confidence 4443 3344556778899999999999999999999988877653211 2233333444466777888877777
Q ss_pred HHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHH
Q 000133 585 KSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECIL 664 (2100)
Q Consensus 585 ~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~ 664 (2100)
|..+...... .|.. --+-.+...++++-...|.++.++++......+ ..-+...++|.++-+.-+.+..++
T Consensus 433 gki~~~l~~~--~R~~----vL~~aftralkdpf~paR~a~v~~l~at~~~~~---~~~va~kIlp~l~pl~vd~e~~vr 503 (690)
T KOG1243|consen 433 GKIAPHLAAS--VRKR----VLASAFTRALKDPFVPARKAGVLALAATQEYFD---QSEVANKILPSLVPLTVDPEKTVR 503 (690)
T ss_pred cccccccchh--hhcc----ccchhhhhhhcCCCCCchhhhhHHHhhcccccc---hhhhhhhccccccccccCcccchh
Confidence 7554332111 1211 123445557778878889999888887775432 223445688888888888877777
Q ss_pred HHHHHHHHHH
Q 000133 665 VEASRCLAAI 674 (2100)
Q Consensus 665 ~~aa~aL~~L 674 (2100)
..|-.++...
T Consensus 504 ~~a~~~i~~f 513 (690)
T KOG1243|consen 504 DTAEKAIRQF 513 (690)
T ss_pred hHHHHHHHHH
Confidence 7777777655
No 336
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=71.49 E-value=17 Score=41.07 Aligned_cols=109 Identities=16% Similarity=0.194 Sum_probs=70.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHH-hhccCccchHHHHhCCcHHHHHHhhCC---------CCHHHHHHHHHHHHHhcc
Q 000133 402 KRLLVGLITMATNEVQEELVRALLK-LCNNEGSLWRALQGREGIQLLISLLGL---------SSEQQQECSVALLCLLSN 471 (2100)
Q Consensus 402 i~~Lv~lL~~~~~~v~~~A~~aL~~-L~~~~~~~~~~i~~~g~i~~Lv~lL~s---------~~~~v~~~A~~aL~nLs~ 471 (2100)
...++..+.+.+... .....|.. |-.......+.+++.||+..|+.+|.. .+...+..+..+|..|..
T Consensus 68 p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n 145 (187)
T PF06371_consen 68 PEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMN 145 (187)
T ss_dssp HHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHc
Confidence 344555555443322 22333333 222323345677788999999988752 345778889999999985
Q ss_pred CCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHh
Q 000133 472 ENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLC 512 (2100)
Q Consensus 472 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~ 512 (2100)
........+...+++..|+..|.+.+..+|..++..|..+|
T Consensus 146 ~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 146 TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 33333444445788999999999999999999999998887
No 337
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=71.09 E-value=15 Score=34.18 Aligned_cols=68 Identities=16% Similarity=0.157 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHhhcCCchhhHHHHhhhcchhHHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHhhc
Q 000133 1288 EQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAAR 1358 (2100)
Q Consensus 1288 ~~~~A~~aL~~La~~~~~~~~~~~~v~~gal~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~~~~~~ 1358 (2100)
..++|+.|++++++....-..+ -+.++++.++++...++...+|..+--+|+.+++..++...+...+
T Consensus 3 ~lKaaLWaighIgss~~G~~lL---~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLGIQLL---DESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHHhHhcChHHHHHH---hhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 3578999999999877766666 3568999999999988889999999999999999988877665544
No 338
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=69.64 E-value=2.3e+02 Score=38.33 Aligned_cols=93 Identities=15% Similarity=0.106 Sum_probs=60.5
Q ss_pred chHHHHHHh----ccCCHHHHHHHHHHHHHhhcCChhHHHhccChHHHHHHhcccCCCchHHHHHHHHHHHHhhhcccch
Q 000133 1569 VIGPLIRVL----GSGIHILQQRAVKALVSIALTWPNEIAKEGGVTELSKIILQADPSLPHALWESAASVLSSILQFSSE 1644 (2100)
Q Consensus 1569 ~i~~Lv~lL----~s~~~~vr~~Al~AL~~Ls~~~~n~l~~~G~i~~Ll~lL~~~~~~~~~~l~e~a~~~L~~i~~~~~~ 1644 (2100)
.++.|.+.| ..++.+-+...++||+|++... .++.+...+. ++...+..++-.|...|.+++....
T Consensus 443 ~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~--------~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p- 512 (574)
T smart00638 443 LLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPS--------SIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDP- 512 (574)
T ss_pred HHHHHHHHHHHHHhcCCchheeeHHHhhhccCChh--------HHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCc-
Confidence 445555544 3467777889999999998764 3455555555 3455666777778888887763221
Q ss_pred hhhcccHHHHHHHhhc--CCHHHHHHHHHHHH
Q 000133 1645 FYLEVPVAVLVRLLRS--GSEGTVIGSLNALL 1674 (2100)
Q Consensus 1645 ~~~~~~v~~Lv~ll~~--~~~~~~~~a~~aL~ 1674 (2100)
....+.++....+ .++++|.+|...|.
T Consensus 513 ---~~v~~~l~~i~~n~~e~~EvRiaA~~~lm 541 (574)
T smart00638 513 ---RKVQEVLLPIYLNRAEPPEVRMAAVLVLM 541 (574)
T ss_pred ---hHHHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 2244556666654 44688988888776
No 339
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=66.54 E-value=42 Score=36.76 Aligned_cols=146 Identities=12% Similarity=0.088 Sum_probs=83.3
Q ss_pred cCcHHHHHHHHhcC-CHHHHHHHHHHHHHhhcchhhhhhhhhcCChHHHHHhhccCChhhHHHHHHHHHHhhcCCchhhH
Q 000133 1230 FAAVSQLVAVLRLG-GRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRAL 1308 (2100)
Q Consensus 1230 ~~al~~Li~~L~~~-~~~~r~~Aa~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~La~~~~~~~~ 1308 (2100)
+..++.|+.+|+.+ +...|..+.+.|+.|+..|..+-.......=..- -....... .-..+.+..........
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~---~~~~~~~~---~~~~l~~~~~~~~~ee~ 82 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKS---SENSNDES---TDISLPMMGISPSSEEY 82 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccc---cccccccc---hhhHHhhccCCCchHHH
Confidence 45678889999987 4688999999999998766554442221110000 00000011 11122222221122222
Q ss_pred HHHhhhcchhHHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHhhcChHHHHHHHhcCCchHHHHHHHHHHHh
Q 000133 1309 AVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKL 1385 (2100)
Q Consensus 1309 ~~~~v~~gal~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~~~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L 1385 (2100)
. -..++..|+++|.+.+-......+..++-.++.....+.-..-...+|.++..++..++..++.-..-|..+
T Consensus 83 y----~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 83 Y----PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred H----HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 2 124788899988886444455566666666666555444333456788888889877767777666655554
No 340
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=66.47 E-value=2.7e+02 Score=32.75 Aligned_cols=135 Identities=20% Similarity=0.194 Sum_probs=79.3
Q ss_pred HHHHH-hccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHH
Q 000133 487 PPLVQ-ILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQL 565 (2100)
Q Consensus 487 ~~Lv~-lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L 565 (2100)
+.|+. +-+..+++.+.....+|..++.+...+.. -++..|..+.+.++......+.+.+..+....+ ...+.|
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~-r~f~~L 76 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKAND-RHFPFL 76 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCc-hHHHHH
Confidence 44555 44556899999999999999987412221 134555566666666665666777777776544 233333
Q ss_pred HHHhhc----------CCcc---hHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHh-cCCCHHHHHHHHHHHHH
Q 000133 566 TALLTS----------DLPE---SKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKIL-SSTKEETQAKSASALAG 631 (2100)
Q Consensus 566 ~~lL~~----------~~~~---~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL-~s~~~~~~~~Aa~aL~~ 631 (2100)
-.++.. +... .......++..++...++ ....-++.+..++ .+.++..+..|..+|..
T Consensus 77 ~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--------~g~~ll~~ls~~L~~~~~~~~~alale~l~~ 148 (234)
T PF12530_consen 77 QPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD--------HGVDLLPLLSGCLNQSCDEVAQALALEALAP 148 (234)
T ss_pred HHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh--------hHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 333222 1111 111122233334333322 1123377777888 78889999999999999
Q ss_pred HhcC
Q 000133 632 IFET 635 (2100)
Q Consensus 632 L~~~ 635 (2100)
++..
T Consensus 149 Lc~~ 152 (234)
T PF12530_consen 149 LCEA 152 (234)
T ss_pred HHHH
Confidence 9943
No 341
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=65.96 E-value=13 Score=36.55 Aligned_cols=73 Identities=19% Similarity=0.285 Sum_probs=58.2
Q ss_pred hHhhhhccCCCCHHHHHHHHHHHHHhhccccccccccccCchHHHHHHhccCCHHHHHHHHHHHHHhhcCChhH
Q 000133 1529 IEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNE 1602 (2100)
Q Consensus 1529 l~~Lv~~L~~~~~~vq~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~lL~s~~~~vr~~Al~AL~~Ls~~~~n~ 1602 (2100)
++..+..|.++.+.+|..++..|.++..... .......+++..+...|.+.++-+-.+|+++|..|+...|+.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~ 77 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE 77 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH
Confidence 4555667888899999999999999987655 222223466788888889999999999999999999887653
No 342
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=65.48 E-value=21 Score=40.85 Aligned_cols=87 Identities=20% Similarity=0.127 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHHHhCCCccchhhhcccc-------HHHHHHhhc-CCCHHHHHHHHHHHHHhhccCccchHHH-HhCCc
Q 000133 373 FLVQERTIEALASLYGNPLLSIKLENSEA-------KRLLVGLIT-MATNEVQEELVRALLKLCNNEGSLWRAL-QGREG 443 (2100)
Q Consensus 373 ~~vq~~aa~aL~~L~~~~~~~~~l~~~g~-------i~~Lv~lL~-~~~~~v~~~A~~aL~~L~~~~~~~~~~i-~~~g~ 443 (2100)
-..|+.|.++|+.|.-.+.|.+.+...+. +..|++++. .+++-.|+.|+-.|.+|+.......+.+ .+.+.
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 34599999999999766666555544443 334556665 4678899999999999999977766555 45677
Q ss_pred HHHHHHhhCCCCHHHH
Q 000133 444 IQLLISLLGLSSEQQQ 459 (2100)
Q Consensus 444 i~~Lv~lL~s~~~~v~ 459 (2100)
|..|+.++++.....+
T Consensus 218 i~~Li~FiE~a~~~~~ 233 (257)
T PF12031_consen 218 ISHLIAFIEDAEQNAH 233 (257)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999986644433
No 343
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=64.89 E-value=3e+02 Score=32.85 Aligned_cols=204 Identities=19% Similarity=0.260 Sum_probs=113.5
Q ss_pred HHHHhcCCchHHHHHHHHHHHhcc-----cHHHHHHHHh------c-CCHHHHHHhhc--CCChhHHHHHHHHHHHhhcC
Q 000133 1364 VSLLVTEFSPAQHSVVRALDKLVD-----DEQLAELVAA------H-GAVIPLVGLLY--GRNYMLHEAISRALVKLGKD 1429 (2100)
Q Consensus 1364 v~lL~~~~~~~~~~A~~aL~~L~~-----~~~~~~~~~~------~-g~i~~L~~lL~--~~~~~vr~~A~~aL~~La~~ 1429 (2100)
+.+|.+..+..-..|++.|.++.. ++..++.+.+ . |..+.|..++- =.+...-+.++..|..++..
T Consensus 13 vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~ 92 (262)
T PF14225_consen 13 VACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSSTYELTLRLLSRLTPL 92 (262)
T ss_pred HHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCCcHHHHHHHHHHHhcC
Confidence 455666666666667766666652 2333332221 1 33333333321 12233456788888888765
Q ss_pred Cc-------hhhHHHHhcCcHHHHHHHhccCC----hhHHHHHHHHHHHHHhccCCcccccccCchHHHHHHhccCC--C
Q 000133 1430 RP-------SCKLEMVKAGVIESVLDILHEAP----DFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSE--F 1496 (2100)
Q Consensus 1430 ~~-------~~k~~i~~~~~i~~lv~~L~~~~----~~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~--~ 1496 (2100)
.. +.|-.+.=...+|.++..+..+. +......|+.+..++...... .+..++....+.. +
T Consensus 93 ~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~-------~La~il~~ya~~~fr~ 165 (262)
T PF14225_consen 93 PDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLP-------NLARILSSYAKGRFRD 165 (262)
T ss_pred CCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCc-------cHHHHHHHHHhcCCCC
Confidence 21 12222222345556666665555 344556666776666443322 3444444444322 1
Q ss_pred CchhHhHHHHHHHHhhcCCCcccccccccCCChHhhhhccCCCCHHHHHHHHHHHHHhhccccccccccccCchHHHHHH
Q 000133 1497 GPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRV 1576 (2100)
Q Consensus 1497 ~~~~~~~A~~~L~nL~~~~~~~~~~~~~~~~~l~~Lv~~L~~~~~~vq~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~l 1576 (2100)
..+-.+.+...|.. . .+.-...+.+..|+.+|..+.+.+|......|..+...-+.+.- ...+.+.||.++
T Consensus 166 ~~dfl~~v~~~l~~---~-----f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~-~~~dlispllrl 236 (262)
T PF14225_consen 166 KDDFLSQVVSYLRE---A-----FFPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP-HGADLISPLLRL 236 (262)
T ss_pred HHHHHHHHHHHHHH---H-----hCchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC-cchHHHHHHHHH
Confidence 12222233333332 1 00012345677899999999999999999999999887666655 334688999999
Q ss_pred hccCCHH
Q 000133 1577 LGSGIHI 1583 (2100)
Q Consensus 1577 L~s~~~~ 1583 (2100)
+.++-..
T Consensus 237 L~t~~~~ 243 (262)
T PF14225_consen 237 LQTDLWM 243 (262)
T ss_pred hCCccHH
Confidence 9765443
No 344
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=64.85 E-value=32 Score=38.83 Aligned_cols=97 Identities=19% Similarity=0.054 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhhcchhhhhhhhcc--------------CCchHHHHHHHhcC------CHHHHHHHHHHHHhhhccchhh
Q 000133 29 EYSLRQLLELIDTRENAFSAVGSH--------------SQAVPVLVSLLRSG------SLAVKIQAATVLGSLCKENELR 88 (2100)
Q Consensus 29 ~~A~~~L~~l~~~~~~~~~~i~~~--------------~g~v~~L~~lL~~~------~~~v~~~aa~~L~~L~~~~~~~ 88 (2100)
..++..|.++++..++++.++... ..++..|+..+..| ..+---+.|.+|.++++-++.|
T Consensus 13 dl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR 92 (192)
T PF04063_consen 13 DLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGR 92 (192)
T ss_pred HHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHH
Confidence 345566666666655555444322 23677788877662 2244577999999999999999
Q ss_pred HHHHhc--CC--hHHHHHhhcCCCHHHHHHHHHHHHHHhcc
Q 000133 89 VKVLLG--GC--IPPLLGLLKSSSAEGQIAAAKTIYAVSQG 125 (2100)
Q Consensus 89 ~~i~~~--g~--i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~ 125 (2100)
..++.. +. +..|+.++.+.+..-|.-++.+|+|++..
T Consensus 93 ~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd 133 (192)
T PF04063_consen 93 QFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFD 133 (192)
T ss_pred HHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhcc
Confidence 988865 34 67777777888777788999999999993
No 345
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=64.76 E-value=19 Score=39.94 Aligned_cols=71 Identities=20% Similarity=0.364 Sum_probs=45.4
Q ss_pred cCCCCCccc-----cccccCCCccccccceeccccCCCCC------eEEEEeecCC--ccCCcccceEEEEEeeEEeecc
Q 000133 2006 LGNTPPRQT-----KIVSTGPNPEWEESFAWSFEIPPKGQ------KLHISCKNKS--KMGKSSFGKVTIQIDRVVMLGA 2072 (2100)
Q Consensus 2006 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 2072 (2100)
.|.+.++-+ -|.-|+.+|.|.++|.=.+-.+--.+ .-||+|++|. +-....+|..-++|-+ .|+
T Consensus 45 ~g~~~~~~~~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~---~g~ 121 (179)
T cd08696 45 KGSSPEEFLTEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR---NGR 121 (179)
T ss_pred eCCCCCccceeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec---CCE
Confidence 676665222 28889999999999998887433222 3578888874 2223457877776643 222
Q ss_pred -cccceee
Q 000133 2073 -VAGEYTL 2079 (2100)
Q Consensus 2073 -~~~~~~~ 2079 (2100)
.+|+|+|
T Consensus 122 L~~g~~~L 129 (179)
T cd08696 122 LQSGEFNL 129 (179)
T ss_pred EecCCEEE
Confidence 2456666
No 346
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=64.74 E-value=50 Score=43.53 Aligned_cols=221 Identities=11% Similarity=0.064 Sum_probs=129.8
Q ss_pred hhhcCChHHHHHhhccCChhhHHHHHHHHHHhhcCCchhhHHHHhhhcchhHHHHHHHhhcCChhhHHHHHHHHHHHhcC
Q 000133 1268 ESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGN 1347 (2100)
Q Consensus 1268 i~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~La~~~~~~~~~~~~v~~gal~~L~~lL~~~~~~~~~~~a~~~L~~L~~~ 1347 (2100)
+......|.|+..+.-++ .-...+..|..++..-+... ...++++.|++++... |..+|-..+.=+......
T Consensus 289 i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~e-----yq~~i~p~l~kLF~~~-Dr~iR~~LL~~i~~~i~~ 360 (690)
T KOG1243|consen 289 IIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEE-----YQVRIIPVLLKLFKSP-DRQIRLLLLQYIEKYIDH 360 (690)
T ss_pred HHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccc-----cccchhhhHHHHhcCc-chHHHHHHHHhHHHHhhh
Confidence 344455666666665443 22223334444443222222 1357899999999875 777776554433333222
Q ss_pred cchHHHHHhhcChHHHHHHHhcCCchHHHHHHHHHHHhcc--cHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHH
Q 000133 1348 TRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVD--DEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVK 1425 (2100)
Q Consensus 1348 ~~~r~~~~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~--~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~ 1425 (2100)
- ...+......|.+...+.+.++..|+.++..+..+.. +.. ..+...+..+..+-.+....+|.+...||++
T Consensus 361 L--t~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~----~Ln~Ellr~~ar~q~d~~~~irtntticlgk 434 (690)
T KOG1243|consen 361 L--TKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR----NLNGELLRYLARLQPDEHGGIRTNTTICLGK 434 (690)
T ss_pred c--CHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh----hhcHHHHHHHHhhCccccCcccccceeeecc
Confidence 1 1234556688999999999999999999999998884 222 2233445666666668888999999999999
Q ss_pred hhcCC-chhhHHHHhcCcHHHHHHHhccCChhHHHHHHHHHHHHHhccCCcccccccCchHHHHHHhccCCCCchhHhHH
Q 000133 1426 LGKDR-PSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSA 1504 (2100)
Q Consensus 1426 La~~~-~~~k~~i~~~~~i~~lv~~L~~~~~~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~~~~~~~~~A 1504 (2100)
++.+. +..|. .-.+....+.+.++-..-|.+....+....+. ........++++.+..+.-+++ ..++..|
T Consensus 435 i~~~l~~~~R~----~vL~~aftralkdpf~paR~a~v~~l~at~~~--~~~~~va~kIlp~l~pl~vd~e--~~vr~~a 506 (690)
T KOG1243|consen 435 IAPHLAASVRK----RVLASAFTRALKDPFVPARKAGVLALAATQEY--FDQSEVANKILPSLVPLTVDPE--KTVRDTA 506 (690)
T ss_pred cccccchhhhc----cccchhhhhhhcCCCCCchhhhhHHHhhcccc--cchhhhhhhccccccccccCcc--cchhhHH
Confidence 99883 22222 22333444455555444455444343222222 2222446667777776666555 5566666
Q ss_pred HHHHHH
Q 000133 1505 LQVLVN 1510 (2100)
Q Consensus 1505 ~~~L~n 1510 (2100)
.+++.-
T Consensus 507 ~~~i~~ 512 (690)
T KOG1243|consen 507 EKAIRQ 512 (690)
T ss_pred HHHHHH
Confidence 665543
No 347
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=64.21 E-value=5.2 Score=43.70 Aligned_cols=105 Identities=15% Similarity=0.180 Sum_probs=73.2
Q ss_pred hHHHHHHhccCCCCchhHhHHHHHHHHhhcCCCcccccccccCCChHhhhhccCCCCHHHHHHHHHHHHHhhcccccccc
Q 000133 1484 VEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKD 1563 (2100)
Q Consensus 1484 v~~Ll~ll~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~~~~~~~~l~~Lv~~L~~~~~~vq~~a~~aL~~l~~~~~~~~~ 1563 (2100)
+||+-+-++ +|-+.++.|.++++.+......+ + ....+++.+..-|++ +.++|..+...|.+++........
T Consensus 30 mGPFKh~vD---DGLelRK~ayE~lytlLd~~~~~--~--~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~ 101 (169)
T PF08623_consen 30 MGPFKHKVD---DGLELRKAAYECLYTLLDTCLSR--I--DISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVL 101 (169)
T ss_dssp ETTCEEEEE---GGGHHHHHHHHHHHHHHHSTCSS--S---HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHH
T ss_pred cCCceeeec---CcHHHHHHHHHHHHHHHHHHHHh--C--CHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHH
Confidence 566665555 88999999999999997643332 2 334568888899988 999999999999999764322211
Q ss_pred ccccCchHHHHHHhcc------------CCHHHHHHHHHHHHHhh
Q 000133 1564 PVTQQVIGPLIRVLGS------------GIHILQQRAVKALVSIA 1596 (2100)
Q Consensus 1564 l~~~g~i~~Lv~lL~s------------~~~~vr~~Al~AL~~Ls 1596 (2100)
-.-...+++|-..|+. ...+..+++++++..+.
T Consensus 102 ~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~ 146 (169)
T PF08623_consen 102 QRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALN 146 (169)
T ss_dssp HCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 1123677888888842 33677888888888883
No 348
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=63.75 E-value=25 Score=32.80 Aligned_cols=67 Identities=9% Similarity=0.024 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHhcCCHHHHHHhhc-CCChhHHHHHHHHHHHhhcCCchhhHHHHhcC
Q 000133 1374 AQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLY-GRNYMLHEAISRALVKLGKDRPSCKLEMVKAG 1441 (2100)
Q Consensus 1374 ~~~~A~~aL~~L~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~vr~~A~~aL~~La~~~~~~k~~i~~~~ 1441 (2100)
....|++++.+++..+.....+.+.++++.++++.. ++...+|-.|..+|+-+++.. +..+.+.+.|
T Consensus 3 ~lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~-~G~~~L~~~g 70 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE-EGAEILDELG 70 (73)
T ss_pred HHHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH-HHHHHHHHcC
Confidence 356799999999987777777778899999999997 677899999999999999884 6666655543
No 349
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=63.00 E-value=11 Score=42.52 Aligned_cols=78 Identities=15% Similarity=0.145 Sum_probs=58.5
Q ss_pred hhccCChHHHHHHhhcc------CCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHH
Q 000133 136 FSTEGVVPVLWEQLKNG------LKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLL 209 (2100)
Q Consensus 136 ~~~~g~vp~L~~lL~~~------~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L 209 (2100)
|+..|++..|++.|... ...+...+..+..||+.+.....+....+-..+++..++..|.+++..++..++.+|
T Consensus 103 Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL 182 (187)
T PF06371_consen 103 FLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEIL 182 (187)
T ss_dssp H-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 67778888888877553 123345777889999999877766555455679999999999999999999999999
Q ss_pred HHHh
Q 000133 210 ACMM 213 (2100)
Q Consensus 210 ~~L~ 213 (2100)
..++
T Consensus 183 ~~lc 186 (187)
T PF06371_consen 183 AALC 186 (187)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 350
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=61.59 E-value=79 Score=35.59 Aligned_cols=142 Identities=13% Similarity=0.146 Sum_probs=97.8
Q ss_pred HHHHHHHhhcCCchhhHHHHhhhcchhHHHHHHHhhc----CChhhHHHHHHHHHHHhcCcc--hHHHHHhhcChHHHHH
Q 000133 1292 AIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSN----CSMELKGDAAELCGVLFGNTR--IRSTVAAARCVEPLVS 1365 (2100)
Q Consensus 1292 A~~aL~~La~~~~~~~~~~~~v~~gal~~L~~lL~~~----~~~~~~~~a~~~L~~L~~~~~--~r~~~~~~~~i~~Lv~ 1365 (2100)
|+..|.-+++..+.++.+ +++.+--.|...|... +-+-++..+..+++.|..|.+ +....-.+..+|....
T Consensus 120 aL~lLQclaShPetk~~F---l~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr 196 (315)
T COG5209 120 ALNLLQCLASHPETKKVF---LDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR 196 (315)
T ss_pred HHHHHHHHhcCcchheee---eecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence 777788888888888877 5676655566666432 335677888899999988854 4444456778899999
Q ss_pred HHhcCCchHHHHHHHHHHHhcccHHHHHHHHh--------cCCHHHHH-HhhcCCChhHHHHHHHHHHHhhcCCchhhHH
Q 000133 1366 LLVTEFSPAQHSVVRALDKLVDDEQLAELVAA--------HGAVIPLV-GLLYGRNYMLHEAISRALVKLGKDRPSCKLE 1436 (2100)
Q Consensus 1366 lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~--------~g~i~~L~-~lL~~~~~~vr~~A~~aL~~La~~~~~~k~~ 1436 (2100)
.+..+++-.+.-|+.+++.+..++..-+.+.. ..++..++ .+...+..+.-+.++.+-..++.+ |..|..
T Consensus 197 Ime~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~-p~aR~l 275 (315)
T COG5209 197 IMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK-PHARAL 275 (315)
T ss_pred HHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC-HhHHHH
Confidence 99999999999999999988854433222211 11222222 334567778888999998888866 455554
Q ss_pred H
Q 000133 1437 M 1437 (2100)
Q Consensus 1437 i 1437 (2100)
+
T Consensus 276 L 276 (315)
T COG5209 276 L 276 (315)
T ss_pred H
Confidence 4
No 351
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.13 E-value=6.1e+02 Score=35.09 Aligned_cols=249 Identities=15% Similarity=0.112 Sum_probs=141.8
Q ss_pred HHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCC----
Q 000133 421 VRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG---- 496 (2100)
Q Consensus 421 ~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~---- 496 (2100)
..+|..|-.++..+.+.+.++.|+..++.++- +++-|......+..|....+.. +.+.-+-.+++.|+++
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpfli--ndehRSslLrivscLitvdpkq----vhhqelmalVdtLksgmvt~ 736 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLI--NDEHRSSLLRIVSCLITVDPKQ----VHHQELMALVDTLKSGMVTR 736 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeee--chHHHHHHHHHHHHHhccCccc----ccHHHHHHHHHHHHhcceec
Confidence 45677788888889999999999888877763 3445554555555554333331 1112344677777764
Q ss_pred ----C----HHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcC----------ChhHHHHHHHHHHH-----H
Q 000133 497 ----S----AKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNG----------SANGKEIAAKTLNH-----L 553 (2100)
Q Consensus 497 ----~----~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~----------~~~~~~~Aa~aL~~-----L 553 (2100)
+ .........+++.+-..+...|..+.++|+...|...|..- +.-+--+-...|.. +
T Consensus 737 IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlav 816 (2799)
T KOG1788|consen 737 ISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAV 816 (2799)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHH
Confidence 1 12234456778888777778888899999998888777541 11111111122221 1
Q ss_pred hcCCCC-------CcHHHHHHHhhcCC---cchH--------HHHH------------HHHHHHHhccC----------c
Q 000133 554 IHKSDT-------ATISQLTALLTSDL---PESK--------VYVL------------DALKSMLSVVS----------F 593 (2100)
Q Consensus 554 ~~~~~~-------~~i~~L~~lL~~~~---~~~~--------~~a~------------~aL~~l~~~~~----------~ 593 (2100)
|....+ -+...+..+|+... .+.- +-+. .|+..+-...+ .
T Consensus 817 cenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGq 896 (2799)
T KOG1788|consen 817 CENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQ 896 (2799)
T ss_pred hhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCC
Confidence 111110 01122223322211 0000 0011 11111111110 1
Q ss_pred hhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhh---cCCCHHHHHHHHHH
Q 000133 594 SDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLL---DVGSECILVEASRC 670 (2100)
Q Consensus 594 ~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL---~~~~~~v~~~aa~a 670 (2100)
.....+.+...++++.|++.+-...+.+|-.-...+-.+++-++.+.+.....|.+..|+... .+++......+..+
T Consensus 897 fnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkI 976 (2799)
T KOG1788|consen 897 FNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKI 976 (2799)
T ss_pred cCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHH
Confidence 112344567889999999988888899999999999999998888888888889999888876 23333344444444
Q ss_pred HHHHh
Q 000133 671 LAAIF 675 (2100)
Q Consensus 671 L~~L~ 675 (2100)
+.-|+
T Consensus 977 vemLg 981 (2799)
T KOG1788|consen 977 VEMLG 981 (2799)
T ss_pred HHHHh
Confidence 44443
No 352
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=60.54 E-value=7.9 Score=50.34 Aligned_cols=67 Identities=18% Similarity=0.379 Sum_probs=53.9
Q ss_pred ccccccccCCCcccc-ccceeccccCCCCCeEEEEeecCCccCCccc-ceEEEEEeeE-------Eeecccccceee
Q 000133 2012 RQTKIVSTGPNPEWE-ESFAWSFEIPPKGQKLHISCKNKSKMGKSSF-GKVTIQIDRV-------VMLGAVAGEYTL 2079 (2100)
Q Consensus 2012 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~~ 2079 (2100)
+.|+|+.++.||.|+ |.|+|..- .|.=-.|...|.+.+-||...| |..|.+++-+ -....||++..|
T Consensus 1104 ~t~~V~dNGlnPiWn~e~ftFeI~-nPe~A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~GfRsVpLkN~ySEdlEL 1179 (1267)
T KOG1264|consen 1104 KTTVVNDNGLNPIWNPEKFTFEIY-NPEFAFLRFVVYEEDMFSDPNFLAQATYPVKAIKSGFRSVPLKNGYSEDLEL 1179 (1267)
T ss_pred EEEEeccCCCCCCCCCcceEEEee-CCceEEEEEEEecccccCCcceeeeeecchhhhhccceeeecccCchhhhhh
Confidence 345688999999999 99999998 6777799999999999988777 9999998743 334556666554
No 353
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=60.25 E-value=21 Score=38.24 Aligned_cols=113 Identities=19% Similarity=0.283 Sum_probs=77.0
Q ss_pred ceeeeeccchhhhhhCCCcceEEEecCCCC---CccccccccCCCccccccceeccccC--CCCC-----eEEEEeecCC
Q 000133 1981 LVVIIKRGNNMKQSVGNPSVYCKLTLGNTP---PRQTKIVSTGPNPEWEESFAWSFEIP--PKGQ-----KLHISCKNKS 2050 (2100)
Q Consensus 1981 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~ 2050 (2100)
+.++|.++.+.-. .....+...+.|+.. ....++...+-.=+|+|.|....... +++. .+++.+....
T Consensus 9 ~~l~i~~l~~~p~--~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~ 86 (143)
T PF10358_consen 9 FDLTIHELENLPS--SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVD 86 (143)
T ss_pred EEEEEEEeECcCC--CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEec
Confidence 4567777777766 445577788888765 34444556677789999998765432 2322 6788888876
Q ss_pred ccCCc-ccceEEEEEeeEEee--cccccceeecCCCCCCCCcceEEEEEe
Q 000133 2051 KMGKS-SFGKVTIQIDRVVML--GAVAGEYTLLPESKSGPSRNLEIEFLW 2097 (2100)
Q Consensus 2051 ~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2097 (2100)
.-|+. .+|+++|.+.+.+.. +.....|.|..- +.+.=+|.|.|.+
T Consensus 87 ~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~--~~~~a~L~isi~~ 134 (143)
T PF10358_consen 87 GSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC--KKSNATLSISISL 134 (143)
T ss_pred CCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC--CCCCcEEEEEEEE
Confidence 66665 899999999999995 577788877443 2233346666654
No 354
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=59.14 E-value=1.8e+02 Score=36.59 Aligned_cols=132 Identities=11% Similarity=0.100 Sum_probs=95.4
Q ss_pred HHHhhccCChhhHHHHHHHHHHhhcCC----chhhHHHHhhhcchhHHHHHHHhhc------CChhhHHHHHHHHHHHhc
Q 000133 1277 LVEILNTGLEREQHAAIAALVRLLSEN----PSRALAVADVEMNAVDVLCRILSSN------CSMELKGDAAELCGVLFG 1346 (2100)
Q Consensus 1277 Lv~lL~~~~~~~~~~A~~aL~~La~~~----~~~~~~~~~v~~gal~~L~~lL~~~------~~~~~~~~a~~~L~~L~~ 1346 (2100)
+..+++...++.+-+|+....++..+. .+++.+. ++-..+-+-+++... ++...+.-+..+|...++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vf---eAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~ 92 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVF---EAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR 92 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHH---HHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC
Confidence 556667777777777887777777533 2444452 454566677777542 455666777788999999
Q ss_pred CcchHHHHHhhcChHHHHHHHhcC-Cch------HHHHHHHHHHHhcccHHHHHHHHhcCCHHHHHHhhcCC
Q 000133 1347 NTRIRSTVAAARCVEPLVSLLVTE-FSP------AQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGR 1411 (2100)
Q Consensus 1347 ~~~~r~~~~~~~~i~~Lv~lL~~~-~~~------~~~~A~~aL~~L~~~~~~~~~~~~~g~i~~L~~lL~~~ 1411 (2100)
.++...+.--...||.|...+..+ +++ +...+...|+.++..+......+..|.++.+.++-..+
T Consensus 93 ~pElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~ 164 (698)
T KOG2611|consen 93 VPELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELP 164 (698)
T ss_pred ChhhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCC
Confidence 998877766667889998888753 333 56678888888887777888888999999999887633
No 355
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=58.93 E-value=10 Score=42.08 Aligned_cols=86 Identities=17% Similarity=0.233 Sum_probs=58.7
Q ss_pred ceeeeeccchhhhhhCCCc--ceEEEecCC---CCCccccccccCCCccccccceecc--ccCCCCCeEEEEeecCCccC
Q 000133 1981 LVVIIKRGNNMKQSVGNPS--VYCKLTLGN---TPPRQTKIVSTGPNPEWEESFAWSF--EIPPKGQKLHISCKNKSKMG 2053 (2100)
Q Consensus 1981 ~~~~~~r~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 2053 (2100)
+.|+|..+.++.-.-.... +-+.+-||+ +.|.+|+.+.-+..|.|+|.++|.. -.-|.+-+|.|.++....-+
T Consensus 10 f~i~i~~~~~~~~~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~~~~ 89 (173)
T cd08693 10 FSITLHKISNLNAAERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVSKKA 89 (173)
T ss_pred EEEEEEEeccCccCCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEecccc
Confidence 7788887777764111122 223455664 3578899888888899999888844 44578889999998754332
Q ss_pred -----------------CcccceEEEEEee
Q 000133 2054 -----------------KSSFGKVTIQIDR 2066 (2100)
Q Consensus 2054 -----------------~~~~~~~~~~~~~ 2066 (2100)
..-+|.++++|=+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 90 KGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred cccccccccccccccCcceEEEEEeEEEEc
Confidence 2457999999854
No 356
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=58.55 E-value=2.9e+02 Score=36.57 Aligned_cols=169 Identities=16% Similarity=0.124 Sum_probs=90.7
Q ss_pred CCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc--Cch
Q 000133 572 DLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAV--KTL 649 (2100)
Q Consensus 572 ~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~--g~v 649 (2100)
-.++.+.-|...|.-+....+.............-+..++..+. .++..+--++++|+|++.+ +-.++.+... ..+
T Consensus 556 wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~~~~i~ 633 (745)
T KOG0301|consen 556 WPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSRLESIL 633 (745)
T ss_pred CCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHHHHHHh
Confidence 34445555666665444432222111111111123444555444 6688888999999999987 4444433321 233
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhC---CCCH--HHHHHHHHHHHHHhcCcHHH
Q 000133 650 WSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAG---SPVL--EVAEQATCALANLILDSEVS 724 (2100)
Q Consensus 650 ~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~---~~~~--evr~~aa~aL~~L~~~~~~~ 724 (2100)
.++...-...+..++...+....|++......+ .+.+..+.|..++. .+.+ |-..+...||++|+......
T Consensus 634 ~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~----~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~ 709 (745)
T KOG0301|consen 634 DPVIEASSLSNKNLQIALATLALNYSVLLIQDN----EQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASV 709 (745)
T ss_pred hhhhhhhcccchhHHHHHHHHHHHHHHHHHhcc----cccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHH
Confidence 333333334445666666555556543321111 11344444444432 3333 34467788999999888777
Q ss_pred HHHHHcCcHHHHHHHHccCChh
Q 000133 725 EKAIAEEIILPATRVLCEGTIS 746 (2100)
Q Consensus 725 ~~~v~~~~v~~L~~ll~~~~~~ 746 (2100)
.++...--+..+++-+++....
T Consensus 710 ~~~A~~~~v~sia~~~~~~~~~ 731 (745)
T KOG0301|consen 710 IQLAKNRSVDSIAKKLKEAVSN 731 (745)
T ss_pred HHHHHhcCHHHHHHHHHHhccC
Confidence 7777777777777777665443
No 357
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=57.19 E-value=3.6e+02 Score=34.10 Aligned_cols=158 Identities=15% Similarity=0.087 Sum_probs=94.4
Q ss_pred hhccchHHHHHHHhcCC-------CHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcC-CCHH------HHHH
Q 000133 601 SAANDAVETMIKILSST-------KEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDV-GSEC------ILVE 666 (2100)
Q Consensus 601 i~~~~~i~~Lv~lL~s~-------~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~-~~~~------v~~~ 666 (2100)
+.++-|.+.+-+++.+. +.-.+..+...|.-.|+. ++.....-....||.|...+.. .+++ +...
T Consensus 52 vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~-pElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d 130 (698)
T KOG2611|consen 52 VFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV-PELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLED 130 (698)
T ss_pred HHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC-hhhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHH
Confidence 34444567777777542 345666788888888886 5543333333579999998832 2222 6777
Q ss_pred HHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHH-HHHHHHHHHHHHh----cCcHHHHHHHHcCcHHHHHHHHc
Q 000133 667 ASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLE-VAEQATCALANLI----LDSEVSEKAIAEEIILPATRVLC 741 (2100)
Q Consensus 667 aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~e-vr~~aa~aL~~L~----~~~~~~~~~v~~~~v~~L~~ll~ 741 (2100)
+-++|..++.+. ...+.++..|+++.+.++-.-++-. -.+.+...+--+. +.++....+.. ++..+.+-..
T Consensus 131 ~Y~cL~~Va~~e--~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~Vlll~~~~~~cw~e~~~~fla--li~~va~df~ 206 (698)
T KOG2611|consen 131 CYECLYLVATAE--AGLMTLIASGGLRVIAQMYELPDGSHDMALALKVLLLLVSKLDCWSETIERFLA--LIAAVARDFA 206 (698)
T ss_pred HHHHHHHHhcCC--chhHHHHhcCchHHHHHHHhCCCCchhHHHHHHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHH
Confidence 888998887664 4444578999999999764432221 2233333333222 33333333322 2555666666
Q ss_pred cCChhHHHHHHHHHHHHHhcCc
Q 000133 742 EGTISGKTLAAAAIARLLHSRK 763 (2100)
Q Consensus 742 ~~~~~~~~~Aa~aL~~l~~~~~ 763 (2100)
..++..+.+..+-|..++....
T Consensus 207 ~~~~a~KfElc~lL~~vl~~~~ 228 (698)
T KOG2611|consen 207 VLHNALKFELCHLLSAVLSSEY 228 (698)
T ss_pred HhhhHHHHHHHHHHHHHHhCCh
Confidence 6677778888888877665433
No 358
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=55.51 E-value=27 Score=37.64 Aligned_cols=117 Identities=17% Similarity=0.262 Sum_probs=83.1
Q ss_pred ceeeeeccchhhhhhCC-----Ccce-EEEecCCCCCccccccccCCCccccccceeccccCCCC------------CeE
Q 000133 1981 LVVIIKRGNNMKQSVGN-----PSVY-CKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKG------------QKL 2042 (2100)
Q Consensus 1981 ~~~~~~r~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~ 2042 (2100)
|-|+|+.+..+-+.... ...| ..+.+|+ ..=.+|.|.-..+|..+++|-+.++..+.| +.+
T Consensus 11 L~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~-QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pi 89 (156)
T PF15627_consen 11 LHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRG-QRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPI 89 (156)
T ss_pred EEEEEeCchhHhhhhhccCCCCceEEEEEEEecC-ceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCce
Confidence 67888888776665553 2222 3666665 344689999999999999999999888744 369
Q ss_pred EEEeecCCccCCccc-ceEEEEEeeEEeecccccceeec--CCCCC----CCCcceEEEEEec
Q 000133 2043 HISCKNKSKMGKSSF-GKVTIQIDRVVMLGAVAGEYTLL--PESKS----GPSRNLEIEFLWS 2098 (2100)
Q Consensus 2043 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~ 2098 (2100)
||.+-..+++|..++ |.=.+.-++|+..|..+-.++.. ..+.. -...++.+|+.|.
T Consensus 90 hivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 90 HIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPN 152 (156)
T ss_pred EEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecC
Confidence 999999999988776 88889999999988874444443 33222 1234566676664
No 359
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=55.35 E-value=7.2 Score=50.07 Aligned_cols=83 Identities=18% Similarity=0.377 Sum_probs=60.3
Q ss_pred cceEEEecC-CCCCcccc---ccccCCCccccccceeccccCCCCCeEEEEeecCCcc----------------------
Q 000133 1999 SVYCKLTLG-NTPPRQTK---IVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKM---------------------- 2052 (2100)
Q Consensus 1999 ~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 2052 (2100)
.+++.|+-| --|.|.+| |-+|-.||.|+|-|.|..| +-.-|.+|+-.|||+.=
T Consensus 162 gl~~~~~~~GpiPAKlIkatsvk~~TLnPkW~EkF~F~Ie-Dv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRy 240 (1103)
T KOG1328|consen 162 GLMHRFQDTGPIPAKLIKATSVKKKTLNPKWSEKFQFTIE-DVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRY 240 (1103)
T ss_pred hhhhccccCCCCcHHHhhhcccccccCCcchhhheeeehh-ccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHH
Confidence 344455544 34555555 7789999999999999999 66677899999998752
Q ss_pred -----------C----CcccceEEEEEeeEEeecccccceeecCCC
Q 000133 2053 -----------G----KSSFGKVTIQIDRVVMLGAVAGEYTLLPES 2083 (2100)
Q Consensus 2053 -----------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2083 (2100)
| .+-+|-+.|++..|=..| +---|+|.|-|
T Consensus 241 FKqv~qSARans~d~tDDFLGciNipl~EiP~~G-ld~WFkLepRS 285 (1103)
T KOG1328|consen 241 FKQVTQSARANSDDCTDDFLGCINIPLAEIPPDG-LDQWFKLEPRS 285 (1103)
T ss_pred HHHHHHHHhcCCCccccccccccccchhcCCcch-HHHHhccCccc
Confidence 1 244688889888876665 34568998874
No 360
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=54.55 E-value=18 Score=39.48 Aligned_cols=67 Identities=25% Similarity=0.405 Sum_probs=52.2
Q ss_pred ceEEEecCC---CCCccccccccCCCccccccceec--cccCCCCCeEEEEeecCCccC---CcccceEEEEEee
Q 000133 2000 VYCKLTLGN---TPPRQTKIVSTGPNPEWEESFAWS--FEIPPKGQKLHISCKNKSKMG---KSSFGKVTIQIDR 2066 (2100)
Q Consensus 2000 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 2066 (2100)
.-+.+-||+ .++..|+.+..+.+|.|||-.+|. +-.-|.+-+|.|.++....-+ ..-+|.++++|=+
T Consensus 32 V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd 106 (156)
T cd08380 32 VRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFD 106 (156)
T ss_pred EEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEc
Confidence 444666675 677788888887889999998886 556688889999999866554 4677999999855
No 361
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=53.64 E-value=67 Score=41.79 Aligned_cols=137 Identities=12% Similarity=0.072 Sum_probs=91.7
Q ss_pred HHHHHHhcC----CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCchhH
Q 000133 608 ETMIKILSS----TKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLD-VGSECILVEASRCLAAIFLSVRENR 682 (2100)
Q Consensus 608 ~~Lv~lL~s----~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~-~~~~~v~~~aa~aL~~L~~~~~~~~ 682 (2100)
|...+...+ .++++|..|.-+|..+-.-+.+++. .-+|.|+..+. +++|.++..|.-.++-+..... .
T Consensus 895 pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN--~ 967 (1128)
T COG5098 895 PVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFN--T 967 (1128)
T ss_pred HHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehh--h
Confidence 444455544 6888999999988887654444443 34788888885 7788888888877777755432 1
Q ss_pred HHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHH
Q 000133 683 EVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLL 759 (2100)
Q Consensus 683 ~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~ 759 (2100)
.. ...-..|.+-+.+.+..||..+..++.+|........ -|-.+.+.+++.+++..+..-|-.-+-.+.
T Consensus 968 ~~----de~t~yLyrrL~De~~~V~rtclmti~fLilagq~KV----KGqlg~ma~~L~deda~Isdmar~fft~~a 1036 (1128)
T COG5098 968 TA----DEHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQLKV----KGQLGKMALLLTDEDAEISDMARHFFTQIA 1036 (1128)
T ss_pred hh----HHHHHHHHHHhcchhhHHHHHHHHHHHHHHHccceee----ccchhhhHhhccCCcchHHHHHHHHHHHHH
Confidence 11 2345667777888888899999999999875433222 466777888888888766555444444433
No 362
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=53.32 E-value=4e+02 Score=33.12 Aligned_cols=159 Identities=14% Similarity=0.136 Sum_probs=111.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhc-cCccchHHHHhC-Cc-HHHHHHhhCCC-----C--------HHHHHHHH-H
Q 000133 402 KRLLVGLITMATNEVQEELVRALLKLCN-NEGSLWRALQGR-EG-IQLLISLLGLS-----S--------EQQQECSV-A 464 (2100)
Q Consensus 402 i~~Lv~lL~~~~~~v~~~A~~aL~~L~~-~~~~~~~~i~~~-g~-i~~Lv~lL~s~-----~--------~~v~~~A~-~ 464 (2100)
++.+...|.+..+.....+.+.|..++. ++....+.+... +. .+.|-+++... + +.+|.... .
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6778888888888888899999999998 665666665542 22 45666666422 1 27777766 4
Q ss_pred HHHHhccCCcccHHHHH-hcCChHHHHHhccCCCHHHHHHHHHHHHH-HhcCC---hhhHHHHHhCCcHHHHHHHhhcCC
Q 000133 465 LLCLLSNENDDSKWAIT-AAGGIPPLVQILESGSAKAKEDSASILRN-LCNHS---EDIRACVESADAVPALLWLLKNGS 539 (2100)
Q Consensus 465 aL~nLs~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~vre~A~~aL~~-L~~~~---~~~~~~i~~~g~i~~Lv~lL~~~~ 539 (2100)
+|..+...++..+..+. ..+.+..+.+.|...++++......+|.. +..+. ...|..+..+..+..|+.+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 55555555555555555 55567788888888888998888888885 44321 245566667778889999887766
Q ss_pred h----hHHHHHHHHHHHHhcCCCCC
Q 000133 540 A----NGKEIAAKTLNHLIHKSDTA 560 (2100)
Q Consensus 540 ~----~~~~~Aa~aL~~L~~~~~~~ 560 (2100)
+ .+.+.+-..|..+|.+...|
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~~G 242 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPKHG 242 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCCcc
Confidence 6 78888888888888765443
No 363
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=52.96 E-value=71 Score=34.04 Aligned_cols=61 Identities=20% Similarity=0.111 Sum_probs=36.7
Q ss_pred hhhccCCCccccCCCccChHHHHHhhccCCHhHHHHHHHHHHHHHH--HHhcCCchhhhhHHHHHhcCcHHHHHHHHh
Q 000133 1886 ALFNNFPRLRATEPATLSIPHLVTALKTGSEATQEAALDALFLLRQ--AWSACPAEVSKAQSVAAADAIPLLQYLIQS 1961 (2100)
Q Consensus 1886 ~~~~~~h~g~cs~~~tfci~~Lv~~L~~~~~~~~eaal~aL~tL~~--~~~~~~~~~~~~~~l~~a~~i~~i~~~~~~ 1961 (2100)
++.+...||.- |.|||.+|++.|+.+.+.|-++|.+-+- |-=+- +..+++. =+.-..+|++
T Consensus 85 ~LLGtM~GGYN-------V~~LI~~L~~~d~~lA~~Aa~aLk~TlLvyDaf~d------v~~~ak~--N~~Ak~VleS 147 (154)
T PF11791_consen 85 ELLGTMLGGYN-------VQPLIDLLKSDDEELAEEAAEALKNTLLVYDAFND------VAELAKA--NAYAKEVLES 147 (154)
T ss_dssp HHHTTS-SSTT-------HHHHHHGG--G-TTTHHHHHHHHHT--TTCCHHHH------HHHHHHT---HHHHHHHHH
T ss_pred HHHhhccCCCc-------HHHHHHHHcCCcHHHHHHHHHHHHhhHHHHhhHHH------HHHHHHc--CHHHHHHHHH
Confidence 34445556665 9999999999999999999999997664 33333 3444444 3445556655
No 364
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.65 E-value=7.8e+02 Score=33.71 Aligned_cols=122 Identities=19% Similarity=0.089 Sum_probs=69.4
Q ss_pred CCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhhcCCC--HHHHHHHHHHHHHHhccCCCCcccccchhccCChH
Q 000133 66 GSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSS--AEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVP 143 (2100)
Q Consensus 66 ~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~s~~--~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp 143 (2100)
+++.++..+-++|..+... .|-.=.++.++.+++ +..|.+|+.+++|-....-.++.++..-+-++...
T Consensus 17 pdps~rk~aEr~L~~~e~q---------~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e 87 (960)
T KOG1992|consen 17 PDPSVRKPAERALRSLEGQ---------QNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDRE 87 (960)
T ss_pred CCCccCchHHHHHHHhccC---------CCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHH
Confidence 3456666666666655322 133445677777665 55688999999987762222222231112222222
Q ss_pred H----HHHHhhccCCCcchHHHHHHHHHHHhc-cCChhhHHHHHhcCCHHHHHHhHccCCHHHHHH
Q 000133 144 V----LWEQLKNGLKSGNVVDNLLTGALRNLS-TSTEGFWAATVQAGGIDILVKLLTLGQSSTQAH 204 (2100)
Q Consensus 144 ~----L~~lL~~~~~~~~~v~~~a~~aL~nL~-~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~ 204 (2100)
. ++.++-+ ....+|.....+|.-+. .+.+..|..+ +|-|+.-++++|-.+-..
T Consensus 88 ~ikslIv~lMl~---s~~~iQ~qlseal~~Ig~~DFP~kWptL-----l~dL~~~ls~~D~~~~~g 145 (960)
T KOG1992|consen 88 QIKSLIVTLMLS---SPFNIQKQLSEALSLIGKRDFPDKWPTL-----LPDLVARLSSGDFNVING 145 (960)
T ss_pred HHHHHHHHHHhc---CcHHHHHHHHHHHHHHhccccchhhHHH-----HHHHHhhccccchHHHHH
Confidence 2 3344333 22347777777777766 3456788854 677888888777655433
No 365
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=52.24 E-value=92 Score=33.41 Aligned_cols=108 Identities=19% Similarity=0.165 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHccCCChhHHHHHHHHHHHHhhcch-hhhhhhhccCCchHHHHHHHhcCCHHHHHHHHHHHHhhhccch-
Q 000133 9 ASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRE-NAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENE- 86 (2100)
Q Consensus 9 ~~v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~-~~~~~i~~~~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~- 86 (2100)
+++.++++..-+......+=. ....+..+.+..+ +.+. ++..|.+.|+++++.++..|...|..+.+|-.
T Consensus 3 ~~~~~~I~kATs~~l~~~dw~-~ileicD~In~~~~~~k~-------a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~ 74 (142)
T cd03569 3 SEFDELIEKATSELLGEPDLA-SILEICDMIRSKDVQPKY-------AMRALKKRLLSKNPNVQLYALLLLESCVKNCGT 74 (142)
T ss_pred chHHHHHHHHcCcccCccCHH-HHHHHHHHHhCCCCCHHH-------HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCH
Confidence 346677777655443333323 3333444444433 3333 67889999999999999999999998887632
Q ss_pred -hhHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhc
Q 000133 87 -LRVKVLLGGCIPPLLGLLK-SSSAEGQIAAAKTIYAVSQ 124 (2100)
Q Consensus 87 -~~~~i~~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~~Ls~ 124 (2100)
-+..+...+-+..|++++. ..++.++..++..+.+-+.
T Consensus 75 ~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 75 HFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 4556777778888888886 4567788888888877665
No 366
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.94 E-value=1.5e+02 Score=35.58 Aligned_cols=99 Identities=16% Similarity=0.236 Sum_probs=71.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhh-cC---CCHHHHHHHHHHHHHHhcCCchhH
Q 000133 607 VETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLL-DV---GSECILVEASRCLAAIFLSVRENR 682 (2100)
Q Consensus 607 i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL-~~---~~~~v~~~aa~aL~~L~~~~~~~~ 682 (2100)
|..+++-+++....+-+.|+.++..|+..-.+..+. .+..++..| .. ++.=++..|-.+|..+..+.+ .+
T Consensus 131 ii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~-----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vt-p~ 204 (334)
T KOG2933|consen 131 IIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ-----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVT-PQ 204 (334)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccC-hH
Confidence 667778888899999999999999999764444333 344555444 22 222367888888988876643 22
Q ss_pred HHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 000133 683 EVAAVARDALSPLVVLAGSPVLEVAEQATCALANLI 718 (2100)
Q Consensus 683 ~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~ 718 (2100)
.+++.|+..+.+.++.++..++....+..
T Consensus 205 -------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 205 -------KLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred -------HHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 35888899999999999988877766654
No 367
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=51.49 E-value=9.8 Score=51.81 Aligned_cols=100 Identities=28% Similarity=0.430 Sum_probs=74.8
Q ss_pred CCCceeeeeccchhhhhhCC--CcceEEEecC----CCCCccccccccCCCccccccceeccccCCCCC----eEEEEee
Q 000133 1978 PGTLVVIIKRGNNMKQSVGN--PSVYCKLTLG----NTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQ----KLHISCK 2047 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 2047 (2100)
-|+|+|-|.-..++.--=++ ++-+.++-+= +...|+||||-+-.+|-++|...++ .-|++. .|.++|+
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~--g~p~~~l~qReLQ~sVl 1600 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYD--GFPKEILQQRELQVSVL 1600 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeec--CCchhhhhhheeeeeee
Confidence 47788888877777444334 4444433332 3446889999999999999987665 345654 8999999
Q ss_pred cCCccCCccc-ceEEEEEeeEEeecccccceee
Q 000133 2048 NKSKMGKSSF-GKVTIQIDRVVMLGAVAGEYTL 2079 (2100)
Q Consensus 2048 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 2079 (2100)
|++.+..+-| |-|+|.+.+|=...+--|-|.|
T Consensus 1601 s~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~l 1633 (1639)
T KOG0905|consen 1601 SNGGLLENVFLGGVNIPLLKVDLLKESVGWYNL 1633 (1639)
T ss_pred cccceeeeeeeeeeecchhhcchhhhhcceeec
Confidence 9999977665 9999999999887766677877
No 368
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=51.49 E-value=6.1e+02 Score=35.01 Aligned_cols=153 Identities=15% Similarity=0.172 Sum_probs=100.9
Q ss_pred HHHHH-hCCCccchhhhccccHHHHHHhhcC-CCHHHHHHHHHHHHHhhccCccchHHHHhCCcH--HHHHHhhCCCCH-
Q 000133 382 ALASL-YGNPLLSIKLENSEAKRLLVGLITM-ATNEVQEELVRALLKLCNNEGSLWRALQGREGI--QLLISLLGLSSE- 456 (2100)
Q Consensus 382 aL~~L-~~~~~~~~~l~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i--~~Lv~lL~s~~~- 456 (2100)
+|.+. ..+|+.++.+.+.++...+...++. .....+..+...+.+++...+. +.......-+ ..+-.++..-+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~-~~~~~~~~~~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLEL-RELLMIFEFIDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhh-hhhhhHHHHHHHHHHHHHHhhcchh
Confidence 66666 6778999999999999999999984 4667888999999998876432 1111111111 223334444444
Q ss_pred HHHHHHHHHHHHhccCCccc-----HHH------------------HHhcCChHH-HHHhccCC-CHHHHHHHHHHHHHH
Q 000133 457 QQQECSVALLCLLSNENDDS-----KWA------------------ITAAGGIPP-LVQILESG-SAKAKEDSASILRNL 511 (2100)
Q Consensus 457 ~v~~~A~~aL~nLs~~~~~~-----~~~------------------i~~~g~i~~-Lv~lL~~~-~~~vre~A~~aL~~L 511 (2100)
+.-+.++..|..+....++. +.. ..-..-+.+ +.+++..+ .+..+-.|.|++.++
T Consensus 573 ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~ 652 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNV 652 (699)
T ss_pred hHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHH
Confidence 66777888888886542211 000 011112233 44555443 677788999999999
Q ss_pred hcCChhhHHHHHhCCcHHHHHHHh
Q 000133 512 CNHSEDIRACVESADAVPALLWLL 535 (2100)
Q Consensus 512 ~~~~~~~~~~i~~~g~i~~Lv~lL 535 (2100)
...++++++.+.+.|+++.+..+-
T Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~ 676 (699)
T KOG3665|consen 653 LEQNKEYCKLVRESNGFELIENIR 676 (699)
T ss_pred HHcChhhhhhhHhccchhhhhhcc
Confidence 998888998898999988776654
No 369
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=50.91 E-value=6.3e+02 Score=32.09 Aligned_cols=193 Identities=14% Similarity=0.100 Sum_probs=117.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCC--CCCcHHHHHHHhhcCCcchHHHH
Q 000133 503 DSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKS--DTATISQLTALLTSDLPESKVYV 580 (2100)
Q Consensus 503 ~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~--~~~~i~~L~~lL~~~~~~~~~~a 580 (2100)
.|+..|..+....+..-..+.+.+|+..+++.++..-..+++. -.+-.... .++...+.+. .-..+-.|...
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~i~~~r~~l 76 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE----NKNEEAGSGIPPEYKESSVD--GYSISYQRQQL 76 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc----ccccCCCCCCCCCccccccc--ccccCHHHHHH
Confidence 4667777777766666777888999999999887632222211 00010000 0000000000 00011123333
Q ss_pred HHHHHH----HHh-ccCchhHHHHhhhccchHHHHHHHhcCC---CHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHH
Q 000133 581 LDALKS----MLS-VVSFSDILREGSAANDAVETMIKILSST---KEETQAKSASALAGIFETRKDLRESSIAVKTLWSV 652 (2100)
Q Consensus 581 ~~aL~~----l~~-~~~~~~~~~~~i~~~~~i~~Lv~lL~s~---~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~L 652 (2100)
++.|-+ +.. -....+..|..+.+..-...|...+++. .+.+-..|+..+..+..+.|.....+.++|.++.+
T Consensus 77 lK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~ 156 (379)
T PF06025_consen 77 LKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAF 156 (379)
T ss_pred HHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHH
Confidence 333333 333 2333444555443244455666677665 46788899999999999888888889999999999
Q ss_pred HHhhc-C---CCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCC
Q 000133 653 MKLLD-V---GSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPV 703 (2100)
Q Consensus 653 v~lL~-~---~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~ 703 (2100)
++.+. . .+.++....-.+++.||-+.. ....+.+.+.++.+++++.++.
T Consensus 157 L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~--Gl~~~~~~~~l~~~f~if~s~~ 209 (379)
T PF06025_consen 157 LDAITAKGILPSSEVLTSLPNVLSAICLNNR--GLEKVKSSNPLDKLFEIFTSPD 209 (379)
T ss_pred HHHHhccCCCCcHHHHHHHHHHHhHHhcCHH--HHHHHHhcChHHHHHHHhCCHH
Confidence 98886 2 456778888888888887653 3333678899999999988753
No 370
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=50.54 E-value=1.9e+02 Score=34.07 Aligned_cols=79 Identities=23% Similarity=0.315 Sum_probs=54.1
Q ss_pred HHHhhcChHHHHHHHhcCCchHHHHHHHHHHHhccc---HH--HHHHHHhcCCHHHHHHhhcCCC--hhHHHHHHHHHHH
Q 000133 1353 TVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDD---EQ--LAELVAAHGAVIPLVGLLYGRN--YMLHEAISRALVK 1425 (2100)
Q Consensus 1353 ~~~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~---~~--~~~~~~~~g~i~~L~~lL~~~~--~~vr~~A~~aL~~ 1425 (2100)
......+.++++.+++.++.. +..+++| +. .....+..|-++.|..++.+++ .-+|.+|+.+|..
T Consensus 68 q~re~~A~~~li~l~~~~~~~--------~~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~ 139 (249)
T PF06685_consen 68 QFREERALPPLIRLFSQDDDF--------LEDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAF 139 (249)
T ss_pred HHhhhhhHHHHHHHHcCCcch--------HHHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 445677999999999776652 1112211 11 1111234677899999998654 6799999999999
Q ss_pred hhcCCchhhHHHHh
Q 000133 1426 LGKDRPSCKLEMVK 1439 (2100)
Q Consensus 1426 La~~~~~~k~~i~~ 1439 (2100)
++...+..|+.+++
T Consensus 140 l~~~~~~~Re~vi~ 153 (249)
T PF06685_consen 140 LVHEGPISREEVIQ 153 (249)
T ss_pred HHHcCCCCHHHHHH
Confidence 99988888888654
No 371
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=50.44 E-value=1.4e+02 Score=33.34 Aligned_cols=57 Identities=21% Similarity=0.327 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhhcc-Cc----cchHHHHhCC------cH-HHHHHhhCCCCHHHHHHHHHHHHHhccC
Q 000133 416 VQEELVRALLKLCNN-EG----SLWRALQGRE------GI-QLLISLLGLSSEQQQECSVALLCLLSNE 472 (2100)
Q Consensus 416 v~~~A~~aL~~L~~~-~~----~~~~~i~~~g------~i-~~Lv~lL~s~~~~v~~~A~~aL~nLs~~ 472 (2100)
+|..|..+|..++.. .. .+|..+.-.+ .- ..+--++.++++.+|..|+.+|..|-.+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~g 70 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEG 70 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHc
Confidence 567777777777766 21 1444443222 23 3444467889999999999999999853
No 372
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=49.90 E-value=1.2e+02 Score=32.13 Aligned_cols=105 Identities=20% Similarity=0.172 Sum_probs=71.0
Q ss_pred HHHHHHHHccCCChhHHHHHHHHHHHHhhcch-hhhhhhhccCCchHHHHHHHhcCCHHHHHHHHHHHHhhhccch--hh
Q 000133 12 AQCIEQLRQSSSSVQEKEYSLRQLLELIDTRE-NAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENE--LR 88 (2100)
Q Consensus 12 ~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~-~~~~~i~~~~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~--~~ 88 (2100)
..+++++-+......+- .....+..+.+..+ +++. ++..|-..|+++++.++..|...|..+.+|-. -+
T Consensus 2 ~~~I~kATs~~~~~~D~-~~il~icd~I~~~~~~~k~-------a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~ 73 (133)
T cd03561 2 TSLIERATSPSLEEPDW-ALNLELCDLINLKPNGPKE-------AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFH 73 (133)
T ss_pred hHHHHHHcCcccCCccH-HHHHHHHHHHhCCCCCHHH-------HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHH
Confidence 45666665544443443 33444444444443 4444 57889999999999999999999999987654 34
Q ss_pred HHHHhcCChHHHHHhhcC---CCHHHHHHHHHHHHHHhc
Q 000133 89 VKVLLGGCIPPLLGLLKS---SSAEGQIAAAKTIYAVSQ 124 (2100)
Q Consensus 89 ~~i~~~g~i~~Lv~lL~s---~~~~~~~~A~~aL~~Ls~ 124 (2100)
..+.....+..|++++.. .+.+++..+...+.+-+.
T Consensus 74 ~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 74 LQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 455555666778888865 467888888888887765
No 373
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=49.81 E-value=1.9e+02 Score=36.56 Aligned_cols=158 Identities=14% Similarity=0.120 Sum_probs=83.2
Q ss_pred hhhHHHHhcCcHHHHHHHhc-cCChhHHHHHHHHHHHHHhccCCcccccccCchHHHHHHhc-cCCCCchhHhHHHHHHH
Q 000133 1432 SCKLEMVKAGVIESVLDILH-EAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLT-RSEFGPDGQHSALQVLV 1509 (2100)
Q Consensus 1432 ~~k~~i~~~~~i~~lv~~L~-~~~~~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll~-~~~~~~~~~~~A~~~L~ 1509 (2100)
+.-.++-+.+..+-+-+-+. ++.+..|.+|..+++.|++.-...........+..++.-.. .+..++..+..|+..+.
T Consensus 201 e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ 280 (370)
T PF08506_consen 201 EEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIG 280 (370)
T ss_dssp HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHH
Confidence 33456666777777777775 34556788899999999865332211112222222222111 22333544555888888
Q ss_pred HhhcCCCcccc-cc-c-ccCCCh----HhhhhccC---CCCHHHHHHHHHHHHHhhccccccccccccCchHHHHHHhcc
Q 000133 1510 NILEHPQCRAD-YS-L-TSHQAI----EPLIPLLD---SPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGS 1579 (2100)
Q Consensus 1510 nL~~~~~~~~~-~~-~-~~~~~l----~~Lv~~L~---~~~~~vq~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~lL~s 1579 (2100)
.|+........ +. . ...++. ..++.-|. +..|-+|..|.+.+...-.. -.++.+ .++++.+++.|.+
T Consensus 281 ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~-l~~~~l--~~~~~~l~~~L~~ 357 (370)
T PF08506_consen 281 ALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQ-LPKEQL--LQIFPLLVNHLQS 357 (370)
T ss_dssp HHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGG-S-HHHH--HHHHHHHHHHTTS
T ss_pred HHHhhhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhh-CCHHHH--HHHHHHHHHHhCC
Confidence 88654432111 00 0 000111 11122222 56778888888888877542 011222 2578999999999
Q ss_pred CCHHHHHHHHHHH
Q 000133 1580 GIHILQQRAVKAL 1592 (2100)
Q Consensus 1580 ~~~~vr~~Al~AL 1592 (2100)
++..|+..|+.|+
T Consensus 358 ~~~vv~tyAA~~i 370 (370)
T PF08506_consen 358 SSYVVHTYAAIAI 370 (370)
T ss_dssp S-HHHHHHHHHHH
T ss_pred CCcchhhhhhhhC
Confidence 9999999999875
No 374
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=49.79 E-value=89 Score=34.82 Aligned_cols=76 Identities=17% Similarity=0.114 Sum_probs=59.2
Q ss_pred hcChHHHHHHHhcCCchHHHHHHHHHHHhccc-HHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCch
Q 000133 1357 ARCVEPLVSLLVTEFSPAQHSVVRALDKLVDD-EQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPS 1432 (2100)
Q Consensus 1357 ~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~-~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~ 1432 (2100)
.-.++.+..-|+..++..+.-|...+..+... ...+..=+-..+|.+|-..|++.+++|...++.+|..|+...+.
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~ 113 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDM 113 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 34667777788888888888888888888743 33344444567788889999999999999999999999666543
No 375
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=49.49 E-value=49 Score=42.96 Aligned_cols=105 Identities=18% Similarity=0.056 Sum_probs=78.3
Q ss_pred hHHHHHHHhcCCchHHHHHHHHHHHhcccHHHHHHHHh------cCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCC---
Q 000133 1360 VEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAA------HGAVIPLVGLLYGRNYMLHEAISRALVKLGKDR--- 1430 (2100)
Q Consensus 1360 i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~------~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~--- 1430 (2100)
+..++.+|.+++-..|..-++++.++..+-.....+.+ ...+..|.+-|.+.++-+|.+|+..+.++..-+
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 45678899999999999999999998843222222222 345677777788999999999999998886542
Q ss_pred chhhHHHHhcCcHHHHHHHhccCChhHHHHHHHHHHHHH
Q 000133 1431 PSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILT 1469 (2100)
Q Consensus 1431 ~~~k~~i~~~~~i~~lv~~L~~~~~~~~~~aa~lL~~Ls 1469 (2100)
+..|.+ .++.+++.|.+.+..+|..+.++|..|-
T Consensus 381 ~~~r~e-----v~~lv~r~lqDrss~VRrnaikl~SkLL 414 (1128)
T COG5098 381 VGRRHE-----VIRLVGRRLQDRSSVVRRNAIKLCSKLL 414 (1128)
T ss_pred cchHHH-----HHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 234444 6778888998888888988888887764
No 376
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=48.49 E-value=10 Score=27.73 Aligned_cols=27 Identities=33% Similarity=0.511 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhhcchhhhhhhhhcCChHHHHHhhcc
Q 000133 1247 ARYSAAKALESLFSADHIRNAESARQAVQPLVEILNT 1283 (2100)
Q Consensus 1247 ~r~~Aa~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~ 1283 (2100)
.|+.|+++|+.+ +++.++++|++.|++
T Consensus 1 VR~~Aa~aLg~i----------gd~~ai~~L~~~L~d 27 (27)
T PF03130_consen 1 VRRAAARALGQI----------GDPRAIPALIEALED 27 (27)
T ss_dssp HHHHHHHHHGGG-----------SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHc----------CCHHHHHHHHHHhcC
Confidence 478899999875 556789999988753
No 377
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=47.60 E-value=4.4e+02 Score=35.49 Aligned_cols=133 Identities=14% Similarity=0.114 Sum_probs=91.9
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 000133 606 AVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLL-DVGSECILVEASRCLAAIFLSVRENREV 684 (2100)
Q Consensus 606 ~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL-~~~~~~v~~~aa~aL~~L~~~~~~~~~~ 684 (2100)
.+|.|...+++.+..+|+.+...+..++..-+ ...+..-++|.|..+. ...+..++..++-|++.+.. ..+.
T Consensus 390 IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q----~lD~ 462 (700)
T KOG2137|consen 390 ILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ----RLDK 462 (700)
T ss_pred HHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH----HHHH
Confidence 37888888899999999999999988886432 3356666888888775 56667889999999998862 2221
Q ss_pred HHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCChh
Q 000133 685 AAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTIS 746 (2100)
Q Consensus 685 ~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~ 746 (2100)
..--.-+.++.+-.+..++++......+..++.........++...++|.++-+...+.-.
T Consensus 463 -~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~L~ 523 (700)
T KOG2137|consen 463 -AAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPSLN 523 (700)
T ss_pred -HHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccccc
Confidence 1112235555566677889888777777777764432224555678888888777766633
No 378
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.96 E-value=7.4e+02 Score=33.18 Aligned_cols=182 Identities=11% Similarity=0.047 Sum_probs=102.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhc--chhh----hhhhhhcCChHHHHHhhccCChhhHHHHHHHHHHhhcCCchhh
Q 000133 1234 SQLVAVLRLGGRGARYSAAKALESLFS--ADHI----RNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRA 1307 (2100)
Q Consensus 1234 ~~Li~~L~~~~~~~r~~Aa~aL~~L~~--~~~~----~~~i~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~La~~~~~~~ 1307 (2100)
|-|...|+-.+.++|.+||..+.+++. +++. .+.+. .+-+..|.++|+++.+.++..|...+.++.. .-..
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~-~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s--~fWe 253 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSII-QKQFEELYSLLEDPYPMVRSTAILGVCKITS--KFWE 253 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHH-HHHHHHHHHHhcCCCchHHHHHHHHHHHHHH--HHHH
Confidence 344467777888999999999988875 2222 22233 3457889999999999999988777766553 1111
Q ss_pred HHHHhhhcchhHHHHHHHh----hcCChhhHHHHHHHHHHHhcCcchHHHHHhhcChHHHHHHHhcCCchHHHHHHHHHH
Q 000133 1308 LAVADVEMNAVDVLCRILS----SNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALD 1383 (2100)
Q Consensus 1308 ~~~~~v~~gal~~L~~lL~----~~~~~~~~~~a~~~L~~L~~~~~~r~~~~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~ 1383 (2100)
. +-..++..|+..+- ..+..+++-..-+-+..+..||.. +..-...+|.|--.|.+.++.+|..++..|.
T Consensus 254 ~----iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~s--h~~le~~Lpal~~~l~D~se~VRvA~vd~ll 327 (1005)
T KOG1949|consen 254 M----IPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLS--HPLLEQLLPALRYSLHDNSEKVRVAFVDMLL 327 (1005)
T ss_pred H----cCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccc--hhHHHHHHHhcchhhhccchhHHHHHHHHHH
Confidence 1 11223333333322 222335555555556666666541 1122223455555677888999999999988
Q ss_pred HhcccHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHh
Q 000133 1384 KLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKL 1426 (2100)
Q Consensus 1384 ~L~~~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~L 1426 (2100)
.+-.....+-+ ..=-.+.++.-|...+..+-+.-+.-+...
T Consensus 328 ~ik~vra~~f~--~I~~~d~~l~~L~~d~~~v~rr~~~li~~s 368 (1005)
T KOG1949|consen 328 KIKAVRAAKFW--KICPMDHILVRLETDSRPVSRRLVSLIFNS 368 (1005)
T ss_pred HHHhhhhhhhh--ccccHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 87421111111 011123455555555555544444444433
No 379
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.86 E-value=9.4e+02 Score=32.99 Aligned_cols=100 Identities=20% Similarity=0.186 Sum_probs=62.8
Q ss_pred ChHHHHHHHhcCCchH-----HHHHHHHHHHhcccHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCchh
Q 000133 1359 CVEPLVSLLVTEFSPA-----QHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSC 1433 (2100)
Q Consensus 1359 ~i~~Lv~lL~~~~~~~-----~~~A~~aL~~L~~~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~ 1433 (2100)
++.....+|.+.++.. +..|+.-|...+............+++..+++...=++-..|..
T Consensus 289 fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~e--------------- 353 (960)
T KOG1992|consen 289 FVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREE--------------- 353 (960)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchh---------------
Confidence 4444456666644432 34466677777777777766667777777777765554443322
Q ss_pred hHHHHhcCcHHHHHHHhc-cCChhHHHHHHHHHHHHHhccC
Q 000133 1434 KLEMVKAGVIESVLDILH-EAPDFLCSAFAELLRILTNNAG 1473 (2100)
Q Consensus 1434 k~~i~~~~~i~~lv~~L~-~~~~~~~~~aa~lL~~Ls~~~~ 1473 (2100)
-+++.|.+.++-+-+-|. ++.+..|..|.++++.|+.+-.
T Consensus 354 DeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe 394 (960)
T KOG1992|consen 354 DEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFE 394 (960)
T ss_pred hHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhc
Confidence 245566667777777774 4555667778888888876654
No 380
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=46.60 E-value=97 Score=37.20 Aligned_cols=112 Identities=15% Similarity=0.167 Sum_probs=70.9
Q ss_pred CCHHHHHHHHHHHHHHhcCChhhHHHHHhcC--chHHHHHhhcCC----CHHHHHHHHHHHHHHhcCCchhHHHHHHhCC
Q 000133 617 TKEETQAKSASALAGIFETRKDLRESSIAVK--TLWSVMKLLDVG----SECILVEASRCLAAIFLSVRENREVAAVARD 690 (2100)
Q Consensus 617 ~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g--~v~~Lv~lL~~~----~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~ 690 (2100)
..+..+.-+.++++|++.+ +..+..+.... .+...+..+... +..++..++..+.|++......+...-....
T Consensus 122 ~~~~~~ml~lR~l~NlF~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ 200 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSH-PPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSE 200 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTS-CCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHH
T ss_pred CcHHHHHHHHHHHHHhhCC-CccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 5788888999999999987 44444443332 344444444443 6789999999999997543211100000112
Q ss_pred ChHHHHH-HhCC-CCHHHHHHHHHHHHHHhcCcHHHHHHHH
Q 000133 691 ALSPLVV-LAGS-PVLEVAEQATCALANLILDSEVSEKAIA 729 (2100)
Q Consensus 691 ~l~~Lv~-ll~~-~~~evr~~aa~aL~~L~~~~~~~~~~v~ 729 (2100)
.+..+.+ +... .++|+..+...||++|+..++...+...
T Consensus 201 ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~ 241 (268)
T PF08324_consen 201 LLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAK 241 (268)
T ss_dssp HHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCC
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHH
Confidence 3555556 3333 7999999999999999976665555543
No 381
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=46.56 E-value=1.4e+02 Score=32.23 Aligned_cols=90 Identities=14% Similarity=0.244 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhcCcchHHHHHhhcChHHHHHHHhcCCchHHHHHHHHHHHhcc--cHHHHHHHHhcCCHHHHHHhhcC-C
Q 000133 1335 GDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVD--DEQLAELVAAHGAVIPLVGLLYG-R 1411 (2100)
Q Consensus 1335 ~~a~~~L~~L~~~~~~r~~~~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~--~~~~~~~~~~~g~i~~L~~lL~~-~ 1411 (2100)
.....++..+-.++. +...++..|...|.+.++.+...|+..|..+.. .......+...+++..|..++.. .
T Consensus 19 ~~il~icD~I~~~~~-----~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~ 93 (144)
T cd03568 19 GLILDVCDKVKSDEN-----GAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRV 93 (144)
T ss_pred HHHHHHHHHHhcCCc-----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccC
Confidence 334455555544332 344577888888999999999999998888873 45566666788899999999987 8
Q ss_pred ChhHHHHHHHHHHHhhcC
Q 000133 1412 NYMLHEAISRALVKLGKD 1429 (2100)
Q Consensus 1412 ~~~vr~~A~~aL~~La~~ 1429 (2100)
+..|+..++..+...+..
T Consensus 94 ~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 94 HPTVKEKLREVVKQWADE 111 (144)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 899999999999888755
No 382
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=45.47 E-value=1.3e+02 Score=36.26 Aligned_cols=135 Identities=19% Similarity=0.090 Sum_probs=77.3
Q ss_pred CCHHHHHHHHHHHHHhhccCccchHHHHhCC--cHHHHHHhhCCC----CHHHHHHHHHHHHHhccCCcccH-HHHHhcC
Q 000133 412 ATNEVQEELVRALLKLCNNEGSLWRALQGRE--GIQLLISLLGLS----SEQQQECSVALLCLLSNENDDSK-WAITAAG 484 (2100)
Q Consensus 412 ~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g--~i~~Lv~lL~s~----~~~v~~~A~~aL~nLs~~~~~~~-~~i~~~g 484 (2100)
.++..+..+++++.|+..+ +..+..+.+.. .+...+..+... +..++..++..+.|++....... ..-....
T Consensus 122 ~~~~~~ml~lR~l~NlF~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ 200 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSH-PPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSE 200 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTS-CCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHH
T ss_pred CcHHHHHHHHHHHHHhhCC-CccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 5678899999999998887 44555555433 343344433333 78899999999999964211111 0000011
Q ss_pred ChHHHHHhccC--CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhh-cCChhHHHHHH
Q 000133 485 GIPPLVQILES--GSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLK-NGSANGKEIAA 547 (2100)
Q Consensus 485 ~i~~Lv~lL~~--~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~Aa 547 (2100)
.+..+++.+.. .++++..+++.+|++|...++..+......|+-..+-..-+ ...+++++.+.
T Consensus 201 ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ 266 (268)
T PF08324_consen 201 LLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAA 266 (268)
T ss_dssp HHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhc
Confidence 23445553332 48999999999999999754444433322333333222222 23455555443
No 383
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=44.95 E-value=1.8e+02 Score=31.05 Aligned_cols=88 Identities=11% Similarity=0.119 Sum_probs=64.7
Q ss_pred HHHHHHHHhcCcchHHHHHhhcChHHHHHHHhcCCchHHHHHHHHHHHhcc--cHHHHHHHHhcCCHHHHHHhhcC----
Q 000133 1337 AAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVD--DEQLAELVAAHGAVIPLVGLLYG---- 1410 (2100)
Q Consensus 1337 a~~~L~~L~~~~~~r~~~~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~--~~~~~~~~~~~g~i~~L~~lL~~---- 1410 (2100)
...++..+-..+. +...++..+...|.++++.+...|+..|..+.. .......+...+++..|+.++..
T Consensus 22 ileicD~In~~~~-----~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~ 96 (139)
T cd03567 22 IQAFCEQINKEPE-----GPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLG 96 (139)
T ss_pred HHHHHHHHHcCCc-----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCC
Confidence 3444444433333 234567778888999999999999988887773 45566667778889999999953
Q ss_pred --CChhHHHHHHHHHHHhhcC
Q 000133 1411 --RNYMLHEAISRALVKLGKD 1429 (2100)
Q Consensus 1411 --~~~~vr~~A~~aL~~La~~ 1429 (2100)
.+..|+...+..+...+..
T Consensus 97 ~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 97 SRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 5689999999998877754
No 384
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=43.58 E-value=1.2e+02 Score=33.17 Aligned_cols=34 Identities=15% Similarity=0.251 Sum_probs=25.8
Q ss_pred ChHhhhhccC-CCCHHHHHHHHHHHHHhhcccccc
Q 000133 1528 AIEPLIPLLD-SPAPAVQQLAAELLSHLLLEEQLQ 1561 (2100)
Q Consensus 1528 ~l~~Lv~~L~-~~~~~vq~~a~~aL~~l~~~~~~~ 1561 (2100)
.++.|+++|+ +.+..+|.++.+.||.++.-+.++
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~ 45 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYK 45 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHH
Confidence 3566777777 447999999999999997655544
No 385
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=43.14 E-value=1.9e+02 Score=30.68 Aligned_cols=74 Identities=12% Similarity=0.099 Sum_probs=58.3
Q ss_pred hhcChHHHHHHHhcCCchHHHHHHHHHHHhcc--cHHHHHHHHhcCCHHHHHHhhcC---CChhHHHHHHHHHHHhhcC
Q 000133 1356 AARCVEPLVSLLVTEFSPAQHSVVRALDKLVD--DEQLAELVAAHGAVIPLVGLLYG---RNYMLHEAISRALVKLGKD 1429 (2100)
Q Consensus 1356 ~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~--~~~~~~~~~~~g~i~~L~~lL~~---~~~~vr~~A~~aL~~La~~ 1429 (2100)
...++..|...|+++++.++..|+..|-.+.. .......+.....+..|+.++.. .+..||++++..+...+..
T Consensus 35 ~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 35 PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 44567778888999999999999999988884 44455555556777788888874 5789999999999888765
No 386
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=41.76 E-value=1.3e+02 Score=31.81 Aligned_cols=106 Identities=18% Similarity=0.119 Sum_probs=71.3
Q ss_pred HHHHHHHHccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhcCCHHHHHHHHHHHHhhhccch--hhH
Q 000133 12 AQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENE--LRV 89 (2100)
Q Consensus 12 ~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~--~~~ 89 (2100)
..+++..-+......+-...+.-+..+.....+.+. ++..|-..|+++++.++..|...|..+.+|-. .+.
T Consensus 2 ~~~i~kATs~~l~~~dw~~~l~icD~i~~~~~~~k~-------a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ 74 (133)
T smart00288 2 ERLIDKATSPSLLEEDWELILEICDLINSTPDGPKD-------AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHL 74 (133)
T ss_pred hhHHHHHcCcCCCCcCHHHHHHHHHHHhCCCccHHH-------HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 356666655554444444445444444433334444 57889999999999999999999999987633 455
Q ss_pred HHHhcCChHHHHHhhcCCC--HHHHHHHHHHHHHHhc
Q 000133 90 KVLLGGCIPPLLGLLKSSS--AEGQIAAAKTIYAVSQ 124 (2100)
Q Consensus 90 ~i~~~g~i~~Lv~lL~s~~--~~~~~~A~~aL~~Ls~ 124 (2100)
.+...+.+..|++++.... +.++..+...+.+-+.
T Consensus 75 ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 75 EVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 6666677888888887543 3377777777776554
No 387
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=41.41 E-value=7e+02 Score=31.24 Aligned_cols=155 Identities=13% Similarity=0.079 Sum_probs=90.7
Q ss_pred hHHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHhhcChHHHHHHHh--c--------CCchHHHHHHHHHHHhc-
Q 000133 1318 VDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLV--T--------EFSPAQHSVVRALDKLV- 1386 (2100)
Q Consensus 1318 l~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~~~~~~~i~~Lv~lL~--~--------~~~~~~~~A~~aL~~L~- 1386 (2100)
-+.+.++|.++.....+-.++..+.+|+++.++.........++.|..+-+ + .+..+...++..|.|+.
T Consensus 47 ~e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf 126 (532)
T KOG4464|consen 47 GERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVF 126 (532)
T ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHh
Confidence 345566666653345566777888888887776544443333444443322 1 23367788888888888
Q ss_pred ccHHHHHHHHhcCCHHHHHHhhcCCCh-----hHHHHHHHHHHHhhcCCchhhHHH-HhcCcHHHHHHHhccC-------
Q 000133 1387 DDEQLAELVAAHGAVIPLVGLLYGRNY-----MLHEAISRALVKLGKDRPSCKLEM-VKAGVIESVLDILHEA------- 1453 (2100)
Q Consensus 1387 ~~~~~~~~~~~~g~i~~L~~lL~~~~~-----~vr~~A~~aL~~La~~~~~~k~~i-~~~~~i~~lv~~L~~~------- 1453 (2100)
.....+....+......+++.+...-. .+.-.=+..|.-+..-.++.|..+ .+.++++.+.+.|.+.
T Consensus 127 ~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~ 206 (532)
T KOG4464|consen 127 HSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEI 206 (532)
T ss_pred ccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCc
Confidence 467777777788888888877653222 122222223333333333555544 5678888888887642
Q ss_pred --Ch---hHHHHHHHHHHHHHhcc
Q 000133 1454 --PD---FLCSAFAELLRILTNNA 1472 (2100)
Q Consensus 1454 --~~---~~~~~aa~lL~~Ls~~~ 1472 (2100)
++ +....|.++|..+.|..
T Consensus 207 n~~~l~pqe~n~a~EaLK~~FNvt 230 (532)
T KOG4464|consen 207 NVPPLNPQETNRACEALKVFFNVT 230 (532)
T ss_pred CCCCCCHHHHHHHHHHHHHHhhee
Confidence 11 34455777777776544
No 388
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=41.38 E-value=66 Score=37.06 Aligned_cols=83 Identities=20% Similarity=0.251 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhccCCcccHHHHHhcCC-------hHHHHHhccC-CCHHHHHHHHHHHHHHhcCChhhH-HHHHhCCc
Q 000133 457 QQQECSVALLCLLSNENDDSKWAITAAGG-------IPPLVQILES-GSAKAKEDSASILRNLCNHSEDIR-ACVESADA 527 (2100)
Q Consensus 457 ~v~~~A~~aL~nLs~~~~~~~~~i~~~g~-------i~~Lv~lL~~-~~~~vre~A~~aL~~L~~~~~~~~-~~i~~~g~ 527 (2100)
.-|..|..+|+.|+- .+.|...+...+- +..|++++.. +++..||.|...|.+|+..++... ....+.+.
T Consensus 139 SPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 457889999999984 6666666555543 3455666654 478889999999999998766544 44456889
Q ss_pred HHHHHHHhhcCCh
Q 000133 528 VPALLWLLKNGSA 540 (2100)
Q Consensus 528 i~~Lv~lL~~~~~ 540 (2100)
|..|+..+++...
T Consensus 218 i~~Li~FiE~a~~ 230 (257)
T PF12031_consen 218 ISHLIAFIEDAEQ 230 (257)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987543
No 389
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=41.19 E-value=3.3e+02 Score=32.60 Aligned_cols=218 Identities=11% Similarity=0.091 Sum_probs=114.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhc--CCCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 000133 609 TMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLD--VGSECILVEASRCLAAIFLSVRENREVAA 686 (2100)
Q Consensus 609 ~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~--~~~~~v~~~aa~aL~~L~~~~~~~~~~~~ 686 (2100)
.|-..|.++++.+|..|...|..+...-+.. ......+..|+..+. -.+......++.++..|..... ..
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~-~~---- 74 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKN-FS---- 74 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcC-CC----
Confidence 3556788999999999999999876543321 123334666666652 2455666667777777753321 11
Q ss_pred HhCCChHHHH-HHhCC-----CCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCChh-HHHHHHHHHHHHH
Q 000133 687 VARDALSPLV-VLAGS-----PVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTIS-GKTLAAAAIARLL 759 (2100)
Q Consensus 687 ~~~~~l~~Lv-~ll~~-----~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~-~~~~Aa~aL~~l~ 759 (2100)
.+....++ .+... -...+|...-..|..++.+.....+-+..+.+..++..+..+-+. .-..+-.-+..+.
T Consensus 75 --~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~ 152 (262)
T PF14500_consen 75 --PESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVIL 152 (262)
T ss_pred --hhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 11122222 22222 234467777788888876544444445667777777777665433 3333333333333
Q ss_pred hcCcc---chhHhhhhhccCcHHHHHHhhhhc-c-cccchHhHHHHHHHHHHcCCCCCCCCcccceeeccCCCchhhhhh
Q 000133 760 HSRKI---DYTITDCVNRAGTVLALVSFLESA-S-GSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSS 834 (2100)
Q Consensus 760 ~~~~~---~~~~~~~~~~~g~l~~li~~l~s~-~-~~v~~~~al~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~ 834 (2100)
...+. .+.+.+.+-++.-+. .--.. + ..|..++--..|.+-+..++ .-.+.+++-|+..
T Consensus 153 ~~~~~~~~~e~lFd~~~cYFPI~----F~pp~~dp~~IT~edLk~~L~~cl~s~~------------~fa~~~~p~LleK 216 (262)
T PF14500_consen 153 QEFDISEFAEDLFDVFSCYFPIT----FRPPPNDPYGITREDLKRALRNCLSSTP------------LFAPFAFPLLLEK 216 (262)
T ss_pred HhcccchhHHHHHHHhhheeeee----eeCCCCCCCCCCHHHHHHHHHHHhcCcH------------hhHHHHHHHHHHH
Confidence 32222 222222211221110 00000 1 23443454455554432221 1234577777778
Q ss_pred hccCChhHHHHHHHHHHH
Q 000133 835 IADATPLLQDKAIEILSR 852 (2100)
Q Consensus 835 l~~~~~~~~~~a~~~L~~ 852 (2100)
|..+.+.++..+.+.|..
T Consensus 217 L~s~~~~~K~D~L~tL~~ 234 (262)
T PF14500_consen 217 LDSTSPSVKLDSLQTLKA 234 (262)
T ss_pred HcCCCcHHHHHHHHHHHH
Confidence 888888888777776643
No 390
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=41.09 E-value=4.4e+02 Score=34.19 Aligned_cols=81 Identities=17% Similarity=0.188 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCC-CCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHH
Q 000133 660 SECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGS-PVLEVAEQATCALANLILDSEVSEKAIAEEIILPATR 738 (2100)
Q Consensus 660 ~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~-~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ 738 (2100)
+..+.-..+.++..+ ...+ .+. .-.+++|+.-++. .++++|..++.+|+.|+...-....-..++++.-|+.
T Consensus 289 ~~~V~Aa~A~A~v~l-~~lP--~KL----nPiIrpLMdSIK~Een~~LQ~rsA~slA~Li~~~~~rkp~PndKIvkNLc~ 361 (441)
T PF12054_consen 289 DVRVLAAAASALVAL-GGLP--KKL----NPIIRPLMDSIKREENELLQQRSAESLARLIQLCVDRKPCPNDKIVKNLCT 361 (441)
T ss_pred HHHHHHHHHHHHHHh-ccCC--CCc----cHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhh
Confidence 446777777888777 3332 222 3457777777765 6888999999999999733222333335688999999
Q ss_pred HHccCChhH
Q 000133 739 VLCEGTISG 747 (2100)
Q Consensus 739 ll~~~~~~~ 747 (2100)
++..|+.++
T Consensus 362 flC~D~seT 370 (441)
T PF12054_consen 362 FLCVDTSET 370 (441)
T ss_pred hhccCcccC
Confidence 998877653
No 391
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=41.06 E-value=2.1e+02 Score=30.56 Aligned_cols=107 Identities=17% Similarity=0.121 Sum_probs=70.2
Q ss_pred HHHHHHHHHccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhcCCHHHHHHHHHHHHhhhccch--hh
Q 000133 11 VAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENE--LR 88 (2100)
Q Consensus 11 v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~--~~ 88 (2100)
+..+++..-+......+=...+.-|..+-....+++. ++..+...|+++++.+...|...|-.+.+|-. -+
T Consensus 2 ~~~~iekAT~~~l~~~dw~~ileicD~In~~~~~~k~-------a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh 74 (139)
T cd03567 2 LEAWLNKATNPSNREEDWEAIQAFCEQINKEPEGPQL-------AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFH 74 (139)
T ss_pred HHHHHHHHcCccCCCCCHHHHHHHHHHHHcCCccHHH-------HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHH
Confidence 4566666555444433333333333333332234433 67889999999999999999999998887543 45
Q ss_pred HHHHhcCChHHHHHhhcC------CCHHHHHHHHHHHHHHhc
Q 000133 89 VKVLLGGCIPPLLGLLKS------SSAEGQIAAAKTIYAVSQ 124 (2100)
Q Consensus 89 ~~i~~~g~i~~Lv~lL~s------~~~~~~~~A~~aL~~Ls~ 124 (2100)
..+...+-+..|++++.. .+..++...+..+..-+.
T Consensus 75 ~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 75 SEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 567667778888998853 456777777777766554
No 392
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=40.91 E-value=1.8e+02 Score=31.34 Aligned_cols=105 Identities=10% Similarity=0.088 Sum_probs=72.3
Q ss_pred HHHHHHHccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhcCCHHHHHHHHHHHHhhhccch--hhHH
Q 000133 13 QCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENE--LRVK 90 (2100)
Q Consensus 13 ~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~--~~~~ 90 (2100)
++++..-+......+=...+.-|..+.....+.+. ++..|.+.|+++++.++..|...|..+.+|-. -+..
T Consensus 3 ~~iekATse~l~~~dw~~il~icD~I~~~~~~~k~-------a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~e 75 (144)
T cd03568 3 DLVEKATDEKLTSENWGLILDVCDKVKSDENGAKD-------CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQE 75 (144)
T ss_pred HHHHHHcCccCCCcCHHHHHHHHHHHhcCCccHHH-------HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 45555444333333333444444444333334444 67888999999999999999999999887655 3556
Q ss_pred HHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHHhc
Q 000133 91 VLLGGCIPPLLGLLKS-SSAEGQIAAAKTIYAVSQ 124 (2100)
Q Consensus 91 i~~~g~i~~Lv~lL~s-~~~~~~~~A~~aL~~Ls~ 124 (2100)
+....-+..|++++.. .+..++...+..+.+.+.
T Consensus 76 vask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 76 VASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 6667778889999877 778888888888887775
No 393
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=40.76 E-value=7.1e+02 Score=29.81 Aligned_cols=212 Identities=16% Similarity=0.127 Sum_probs=109.5
Q ss_pred HHHhccCChhHHHHHHHHHHHH-HhccCCcccccccCchHHHHHHhccCCCCchhHhHHHHHHHHhhcCCCccccccccc
Q 000133 1447 LDILHEAPDFLCSAFAELLRIL-TNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTS 1525 (2100)
Q Consensus 1447 v~~L~~~~~~~~~~aa~lL~~L-s~~~~~~~~~~~~~~v~~Ll~ll~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~~~~~ 1525 (2100)
=..|.++++..|..+..+|.+. ...+.... ....+..|+.-+.+.-++......++.+|..|.....-... ..
T Consensus 5 g~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L---~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~---~~ 78 (262)
T PF14500_consen 5 GEYLTSEDPIIRAKALELLSEVLERLPPDFL---SRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPE---SA 78 (262)
T ss_pred hhhhCCCCHHHHHHHHHHHHHHHHhCCHhhc---cHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChh---hH
Confidence 3455566666666665555432 22222111 11123334333332222344555556666665422110000 01
Q ss_pred CCChHhhhhccC--CCCHHHHHHHHHHHHHhhcccccccccc--ccCchHHHHHHhc-cCCHHHHHHHHHHHHHhhcCCh
Q 000133 1526 HQAIEPLIPLLD--SPAPAVQQLAAELLSHLLLEEQLQKDPV--TQQVIGPLIRVLG-SGIHILQQRAVKALVSIALTWP 1600 (2100)
Q Consensus 1526 ~~~l~~Lv~~L~--~~~~~vq~~a~~aL~~l~~~~~~~~~l~--~~g~i~~Lv~lL~-s~~~~vr~~Al~AL~~Ls~~~~ 1600 (2100)
...+..+.+... +-....|......|..+..+ +...+. ..+.+..++++.+ ..||.--..+.+-+..+....+
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~--~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN--HREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH--hHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 112222332221 33456677788888777653 222222 2356677777774 4788888888888888877764
Q ss_pred hHHHhccChHHHHHHhcc-------cCCC-----chHHHHHHHHHHHHhhhcccchhhhcccHHHHHHHhhcCCHHHHHH
Q 000133 1601 NEIAKEGGVTELSKIILQ-------ADPS-----LPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSEGTVIG 1668 (2100)
Q Consensus 1601 n~l~~~G~i~~Ll~lL~~-------~~~~-----~~~~l~e~a~~~L~~i~~~~~~~~~~~~v~~Lv~ll~~~~~~~~~~ 1668 (2100)
. ....+.+.+.++. .+++ .+..++......|+ +...+..-.+|.|+.-|.++.+.++..
T Consensus 157 ~----~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~-----s~~~fa~~~~p~LleKL~s~~~~~K~D 227 (262)
T PF14500_consen 157 I----SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS-----STPLFAPFAFPLLLEKLDSTSPSVKLD 227 (262)
T ss_pred c----chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc-----CcHhhHHHHHHHHHHHHcCCCcHHHHH
Confidence 2 2234455555544 2211 22333332222222 122333457999999999999999999
Q ss_pred HHHHHHH
Q 000133 1669 SLNALLV 1675 (2100)
Q Consensus 1669 a~~aL~~ 1675 (2100)
++..|..
T Consensus 228 ~L~tL~~ 234 (262)
T PF14500_consen 228 SLQTLKA 234 (262)
T ss_pred HHHHHHH
Confidence 9988874
No 394
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=40.37 E-value=25 Score=33.53 Aligned_cols=82 Identities=15% Similarity=0.299 Sum_probs=58.6
Q ss_pred eeeccchhh--hhhCCCc-ceE--EEecCCCCCccccccccCCCccccccceeccccCCCCC-eEEEEeecCCccCCccc
Q 000133 1984 IIKRGNNMK--QSVGNPS-VYC--KLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQ-KLHISCKNKSKMGKSSF 2057 (2100)
Q Consensus 1984 ~~~r~~~~~--~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 2057 (2100)
|++...++. .++|... ... .+|+-.+-+-+|-+---++||+.+|+|-|...---..+ .|.+++.+ .+=+|+.+
T Consensus 4 tv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~-~~~RKe~i 82 (103)
T cd08684 4 TVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT-QTPRKRTI 82 (103)
T ss_pred EEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec-cCCcccee
Confidence 455555543 3455533 222 67776666666777788999999999999887555555 89999999 55588889
Q ss_pred ceEEEEEee
Q 000133 2058 GKVTIQIDR 2066 (2100)
Q Consensus 2058 ~~~~~~~~~ 2066 (2100)
|.|-+.++.
T Consensus 83 G~~sL~l~s 91 (103)
T cd08684 83 GECSLSLRT 91 (103)
T ss_pred eEEEeeccc
Confidence 999888764
No 395
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=40.34 E-value=5.9e+02 Score=32.28 Aligned_cols=94 Identities=14% Similarity=0.200 Sum_probs=77.0
Q ss_pred HHHHHHhhCCC---CHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhcc-CC---CHHHHHHHHHHHHHHhcCCh
Q 000133 444 IQLLISLLGLS---SEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILE-SG---SAKAKEDSASILRNLCNHSE 516 (2100)
Q Consensus 444 i~~Lv~lL~s~---~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~-~~---~~~vre~A~~aL~~L~~~~~ 516 (2100)
...|..++++. .+.+-..|+..+..+....|..-..+.++|.++.+++.+. .+ +.++-...-.+|..||- +.
T Consensus 108 ~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~ 186 (379)
T PF06025_consen 108 LSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL-NN 186 (379)
T ss_pred HHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CH
Confidence 45666666664 5677788999999999878888889999999999999887 44 67777777888999998 47
Q ss_pred hhHHHHHhCCcHHHHHHHhhcC
Q 000133 517 DIRACVESADAVPALLWLLKNG 538 (2100)
Q Consensus 517 ~~~~~i~~~g~i~~Lv~lL~~~ 538 (2100)
.-.+.+.+.+.++.+++++.+.
T Consensus 187 ~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 187 RGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred HHHHHHHhcChHHHHHHHhCCH
Confidence 7888888999999999999874
No 396
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=39.61 E-value=1.1e+03 Score=31.86 Aligned_cols=157 Identities=19% Similarity=0.126 Sum_probs=93.9
Q ss_pred cCCcHHHHHhhhhhcccccCccccccHHHHHHhcCCC---C---CCCCchHHHHHHHHHHhh--cCchhhhHHHhcCcHH
Q 000133 1121 RYPDQVALERLFRVEDIRVGATSRKAIPALVDLLKPI---P---DRPGAPFLALGFLIQLAK--DCPSNKIVMVEAGALE 1192 (2100)
Q Consensus 1121 ~~~~~~~~~~L~~~~~~~~~~~~~~~i~~Lv~~l~~~---~---~~~~~~~~Al~~L~~la~--~~~~~r~~i~e~G~i~ 1192 (2100)
-+|+.+++..|+-...-+...+..+.++-+++.+..+ | +.....-+|+++++.+-+ ..+.--.-+++.=.++
T Consensus 384 ~spdlaal~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~ 463 (970)
T COG5656 384 LSPDLAALFFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVN 463 (970)
T ss_pred CChhHHHHHHHHHHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHH
Confidence 4688888888888888888888999999999999433 2 233234466666666654 1221122344444556
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHHh---hcCHHHHhhhcccCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcchhhhhhhh
Q 000133 1193 ALTKYLSLGPQDATEEAATDLLGIL---FSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAES 1269 (2100)
Q Consensus 1193 ~L~~~L~s~~~~~~~~~~~~ll~~l---~~~~~~~~~~~~~~al~~Li~~L~~~~~~~r~~Aa~aL~~L~~~~~~~~~i~ 1269 (2100)
.+...+++.....+-.+... ++.+ +.++.. ...+.+.-...|++.+-..+..||-||..+-.++.....+.
T Consensus 464 hv~P~f~s~ygfL~Srace~-is~~eeDfkd~~i-----ll~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~s 537 (970)
T COG5656 464 HVIPAFRSNYGFLKSRACEF-ISTIEEDFKDNGI-----LLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFS 537 (970)
T ss_pred HhhHhhcCcccchHHHHHHH-HHHHHHhcccchH-----HHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHH
Confidence 66666666655444444333 2222 122222 22345555667777666789999999888766666555555
Q ss_pred h--cCChHHHHHhhcc
Q 000133 1270 A--RQAVQPLVEILNT 1283 (2100)
Q Consensus 1270 ~--~~~i~~Lv~lL~~ 1283 (2100)
+ ++..+.|+.+=+.
T Consensus 538 ahVp~tmekLLsLSn~ 553 (970)
T COG5656 538 AHVPETMEKLLSLSNT 553 (970)
T ss_pred hhhhHHHHHHHHhccc
Confidence 4 4444555544443
No 397
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=39.05 E-value=2.3e+02 Score=31.30 Aligned_cols=112 Identities=18% Similarity=0.101 Sum_probs=77.4
Q ss_pred chHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHH--HhCCChHHHHHHhCCC-CHHHHHHHHHHHHHHh----cC
Q 000133 648 TLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAA--VARDALSPLVVLAGSP-VLEVAEQATCALANLI----LD 720 (2100)
Q Consensus 648 ~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~--~~~~~l~~Lv~ll~~~-~~evr~~aa~aL~~L~----~~ 720 (2100)
.+..+..++++++...+..++..+...+...+ ...+ ....++..|++++..+ .+.+++.++.+|..|+ ..
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~---~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS---WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 45567788889888888888877777765431 1112 2245888999999875 4457799999999987 23
Q ss_pred cHHHHHHHH---cCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCcc
Q 000133 721 SEVSEKAIA---EEIILPATRVLCEGTISGKTLAAAAIARLLHSRKI 764 (2100)
Q Consensus 721 ~~~~~~~v~---~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~~ 764 (2100)
++...++.. ...++.++.+++. ......+..+|..++...++
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT 147 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence 555556554 4556666666655 45777888899998886665
No 398
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=39.04 E-value=1.7e+02 Score=36.99 Aligned_cols=153 Identities=13% Similarity=0.147 Sum_probs=74.5
Q ss_pred HHhCCcHHHHHHhhCC-CCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhcc------CCCHHHHHHHHHHHHH
Q 000133 438 LQGREGIQLLISLLGL-SSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILE------SGSAKAKEDSASILRN 510 (2100)
Q Consensus 438 i~~~g~i~~Lv~lL~s-~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~------~~~~~vre~A~~aL~~ 510 (2100)
+.+.+-.+-+-+-++. ....-+.+|+..|..|+.........+.. ..+-.++. ..+...++.|...+..
T Consensus 206 lfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~----~~i~~~l~~y~~~~~~~w~~KD~Al~Li~a 281 (370)
T PF08506_consen 206 LFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILM----QYIQQLLQQYASNPSNNWRSKDGALYLIGA 281 (370)
T ss_dssp HHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-TTT-HHHHHHHHHHHHH
T ss_pred HHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHhhCCcccHHHHHHHHHHHHH
Confidence 3344555555554543 33455677888898998643333222221 12222232 2366778889999999
Q ss_pred HhcCChhhHHHHHhCCcHH-----HHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHH
Q 000133 511 LCNHSEDIRACVESADAVP-----ALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALK 585 (2100)
Q Consensus 511 L~~~~~~~~~~i~~~g~i~-----~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~ 585 (2100)
|+......+ .|+-. .+.+.+.+. .+|.|. --.+..|=+|..|++-+.
T Consensus 282 la~k~~t~~-----~Gvt~~~~~v~v~~Ff~~~----------------------v~peL~-~~~~~~piLka~aik~~~ 333 (370)
T PF08506_consen 282 LASKGSTTK-----SGVTQTNELVDVVDFFSQH----------------------VLPELQ-PDVNSHPILKADAIKFLY 333 (370)
T ss_dssp HHBSS--BT-----TB-S-B-TTS-HHHHHHHH----------------------TCHHHH--SS-S-HHHHHHHHHHHH
T ss_pred HHhhhcccc-----CCcccccccccHHHHHHHH----------------------hHHHhc-ccCCCCcchHHHHHHHHH
Confidence 987542211 12111 122222220 011111 000122234455555555
Q ss_pred HHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHH
Q 000133 586 SMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASAL 629 (2100)
Q Consensus 586 ~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL 629 (2100)
.+-...+.+. . ...+|.++..|.+++.-++..||.++
T Consensus 334 ~Fr~~l~~~~-l------~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 334 TFRNQLPKEQ-L------LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHGGGS-HHH-H------HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHhhCCHHH-H------HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 5544433222 1 22489999999999999999999875
No 399
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=37.60 E-value=64 Score=39.79 Aligned_cols=86 Identities=20% Similarity=0.350 Sum_probs=68.3
Q ss_pred CceeeeeccchhhhhhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCC------eEEEEeecC--Cc
Q 000133 1980 TLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQ------KLHISCKNK--SK 2051 (2100)
Q Consensus 1980 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~--~~ 2051 (2100)
+.+|.|+.+.++-+. -....+.--++ ||..=.|-.|.|...|+|+....|..|-...+| .+-+.|..- ++
T Consensus 1 ~ivl~i~egr~F~~~-~~~~~vv~a~~-ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 1 LIVLSILEGRNFPQR-PRHPIVVEAKF-NGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred CEEEEEecccCCCCC-CCccEEEEEEe-CCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 468899999888777 12233333334 777788889999999999999999999776666 477889884 57
Q ss_pred cCCcccceEEEEEeeE
Q 000133 2052 MGKSSFGKVTIQIDRV 2067 (2100)
Q Consensus 2052 ~~~~~~~~~~~~~~~~ 2067 (2100)
-.|+++|+|-+.|+-+
T Consensus 79 ~~re~iGyv~LdLRsa 94 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSA 94 (340)
T ss_pred CcceeccEEEEEcccc
Confidence 7899999999999998
No 400
>PF13983 YsaB: YsaB-like lipoprotein
Probab=37.38 E-value=23 Score=31.54 Aligned_cols=20 Identities=45% Similarity=0.708 Sum_probs=17.3
Q ss_pred ccccceeccccCCCCCeEEEEe
Q 000133 2025 WEESFAWSFEIPPKGQKLHISC 2046 (2100)
Q Consensus 2025 ~~~~~~~~~~~~~~~~~~~~~~ 2046 (2100)
-+|+|.-+|| |.||.||++.
T Consensus 57 r~E~FvCSFD--~dGqFLHLSM 76 (77)
T PF13983_consen 57 RKEGFVCSFD--ADGQFLHLSM 76 (77)
T ss_pred cccceEEeEC--CCCcEEEeec
Confidence 3699999998 8899999974
No 401
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=37.31 E-value=2.8e+02 Score=29.79 Aligned_cols=74 Identities=15% Similarity=0.126 Sum_probs=60.4
Q ss_pred hhcChHHHHHHHhcCCchHHHHHHHHHHHhcc--cHHHHHHHHhcCCHHHHHHhhc-CCChhHHHHHHHHHHHhhcC
Q 000133 1356 AARCVEPLVSLLVTEFSPAQHSVVRALDKLVD--DEQLAELVAAHGAVIPLVGLLY-GRNYMLHEAISRALVKLGKD 1429 (2100)
Q Consensus 1356 ~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~--~~~~~~~~~~~g~i~~L~~lL~-~~~~~vr~~A~~aL~~La~~ 1429 (2100)
...++..|...|.++++.+...|+..|..+.. .......+...+++..|..++. ..++.|+++++..+...+..
T Consensus 39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 45677888899999999999999988877774 3555666777888999999987 67789999999999887754
No 402
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.07 E-value=1.4e+02 Score=35.82 Aligned_cols=139 Identities=14% Similarity=0.150 Sum_probs=93.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHH
Q 000133 402 KRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAIT 481 (2100)
Q Consensus 402 i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~ 481 (2100)
+...+..|.+.+......++..|+.|+.-+.+...... +..|-.+++-+++....+-..|+.++..+....... +.
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~---i~ 165 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNS---ID 165 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 34456667788888888888888888876554322222 246778888889998999999999999886422221 11
Q ss_pred hcCChHHHHH-hccCC---CHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHH
Q 000133 482 AAGGIPPLVQ-ILESG---SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHL 553 (2100)
Q Consensus 482 ~~g~i~~Lv~-lL~~~---~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L 553 (2100)
+ ....++. |+... +.=+++.|-.+|..+..+... .-+++.|.-.+++.+++++..++....+.
T Consensus 166 ~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp-------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 166 Q--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP-------QKLLRKLIPILQHSNPRVRAKAALCFSRC 232 (334)
T ss_pred H--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHhhhchhhhhhhhcccccc
Confidence 1 2333443 44333 445789999999999875322 22567788888888888888777665444
No 403
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=36.26 E-value=9.3e+02 Score=29.89 Aligned_cols=158 Identities=14% Similarity=0.157 Sum_probs=100.6
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhhc-CCchhhHHHHh--cCcHHHHHHHhccCCh-------------hHHHHHHHH
Q 000133 1401 VIPLVGLLYGRNYMLHEAISRALVKLGK-DRPSCKLEMVK--AGVIESVLDILHEAPD-------------FLCSAFAEL 1464 (2100)
Q Consensus 1401 i~~L~~lL~~~~~~vr~~A~~aL~~La~-~~~~~k~~i~~--~~~i~~lv~~L~~~~~-------------~~~~~aa~l 1464 (2100)
++.+...|++....+...++..|..++. +......++.+ .=..+.+.+++..... .+|..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~---- 133 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTN---- 133 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHH----
Confidence 6778888998888888899999999998 65444444433 2222334444432110 11111
Q ss_pred HHHHHhccCCcccccccCchHHHHHHhccCCCCchhHhHHHHHHHHhhcCCCcccccccccCCChHhhhhccCCCCHHHH
Q 000133 1465 LRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQ 1544 (2100)
Q Consensus 1465 L~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~~~~~~~~l~~Lv~~L~~~~~~vq 1544 (2100)
.+..++.++...+ +..++ .+ +...+.+..+...|..+++++.
T Consensus 134 ------------------fI~F~Lsfl~~~~--~~~~~-----------------~l-L~~~~~~~~l~k~l~~D~~~~v 175 (330)
T PF11707_consen 134 ------------------FIRFWLSFLSSGD--PELKR-----------------DL-LSQKKLMSALFKGLRKDPPETV 175 (330)
T ss_pred ------------------HHHHHHHHHccCC--HHHHH-----------------HH-HHcCchHHHHHhcccCCCHHHH
Confidence 2333444444322 22221 11 3555668899999999999999
Q ss_pred HHHHHHHHH-hhccccc----cccccccCchHHHHHHhccCCH----HHHHHHHHHHHHhhcCCh
Q 000133 1545 QLAAELLSH-LLLEEQL----QKDPVTQQVIGPLIRVLGSGIH----ILQQRAVKALVSIALTWP 1600 (2100)
Q Consensus 1545 ~~a~~aL~~-l~~~~~~----~~~l~~~g~i~~Lv~lL~s~~~----~vr~~Al~AL~~Ls~~~~ 1600 (2100)
...+.+|.. +..++.. |..+....++..|..+.+..++ .++..+-.-|..+++++.
T Consensus 176 ~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 176 ILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDGEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred HHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHhcCCC
Confidence 999999996 4444433 3445556777888887776666 888888888888888773
No 404
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=36.17 E-value=1.1e+03 Score=35.36 Aligned_cols=130 Identities=12% Similarity=0.101 Sum_probs=79.7
Q ss_pred HhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCCh
Q 000133 613 ILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDAL 692 (2100)
Q Consensus 613 lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l 692 (2100)
+|++.++.++.-++.....++...+.+ .+..++..|+..+.+++..-...|+..|..|+...++ .. ..-...+
T Consensus 443 Ll~S~e~~v~~FG~~~Y~~lF~~fds~----~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~--~l-~~fa~~l 515 (1426)
T PF14631_consen 443 LLRSKEPSVREFGSHLYKYLFKEFDSY----CQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPS--EL-QPFATFL 515 (1426)
T ss_dssp HHTSSSHHHHHHHHHHHHHHHHSS-HH----HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HH--HH-HHTHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHhhccch----hHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHH--HH-HHHHHHH
Confidence 678999999999999999988775442 2334778888888888776778999999999764332 11 1223345
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCChhHHH
Q 000133 693 SPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKT 749 (2100)
Q Consensus 693 ~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~~~~ 749 (2100)
..++..+..-+..--...-..|+.|+.........+.+++--.+-+.+.+.+...++
T Consensus 516 ~giLD~l~~Ls~~qiR~lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~ 572 (1426)
T PF14631_consen 516 KGILDYLDNLSLQQIRKLFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKR 572 (1426)
T ss_dssp HGGGGGGGG--HHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHH
Confidence 555566665555444555777777763222222345566666666777777777544
No 405
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=35.97 E-value=2.4e+02 Score=30.13 Aligned_cols=90 Identities=20% Similarity=0.204 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhcCcchHHHHHhhcChHHHHHHHhcCCchHHHHHHHHHHHhcc--cHHHHHHHHhcCCHHHHHHhhcC-C
Q 000133 1335 GDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVD--DEQLAELVAAHGAVIPLVGLLYG-R 1411 (2100)
Q Consensus 1335 ~~a~~~L~~L~~~~~~r~~~~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~--~~~~~~~~~~~g~i~~L~~lL~~-~ 1411 (2100)
.....++..+-.++. ....++..|...|.++++.+...|+..|-.+.. .+.....+....++..|..++.+ .
T Consensus 24 ~~~l~icD~i~~~~~-----~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~ 98 (140)
T PF00790_consen 24 SLILEICDLINSSPD-----GAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKK 98 (140)
T ss_dssp HHHHHHHHHHHTSTT-----HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCC
Confidence 334455555544432 334567778888999999999999998888874 45666666677788999998874 3
Q ss_pred Chh---HHHHHHHHHHHhhcC
Q 000133 1412 NYM---LHEAISRALVKLGKD 1429 (2100)
Q Consensus 1412 ~~~---vr~~A~~aL~~La~~ 1429 (2100)
... ||++++..+...+..
T Consensus 99 ~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 99 TDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp THHHSHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHH
Confidence 333 899999998877654
No 406
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=35.92 E-value=1.3e+03 Score=31.44 Aligned_cols=91 Identities=15% Similarity=0.197 Sum_probs=65.8
Q ss_pred HHHhhcChHHHHHHHhcCCchHHHHHHHHHHHhcc-cHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCc
Q 000133 1353 TVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVD-DEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRP 1431 (2100)
Q Consensus 1353 ~~~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~ 1431 (2100)
+..-..+|..|..+-.++=+.++..++..++.+.. .++.- ..++..|+.-|.+++..+--+|-..|-+|-...|
T Consensus 299 K~ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE-----~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HP 373 (988)
T KOG2038|consen 299 KILYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQE-----NNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHP 373 (988)
T ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHH-----HHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCC
Confidence 33445677888888888888999999999999883 22221 2246778888889998888888888888877777
Q ss_pred hhhHHHHhcCcHHHHHHHhccC
Q 000133 1432 SCKLEMVKAGVIESVLDILHEA 1453 (2100)
Q Consensus 1432 ~~k~~i~~~~~i~~lv~~L~~~ 1453 (2100)
.-|..| +.-+.+++.++
T Consensus 374 nMK~Vv-----i~EIer~~FRp 390 (988)
T KOG2038|consen 374 NMKIVV-----IDEIERLAFRP 390 (988)
T ss_pred cceeeh-----HHHHHHHHccc
Confidence 777664 44555555444
No 407
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=35.15 E-value=3.2e+02 Score=30.16 Aligned_cols=120 Identities=16% Similarity=0.054 Sum_probs=76.6
Q ss_pred CCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCc-HHHHHHHHcCcHHHHHHHHccCChh-HHHHHHHHHHHHHhcCccch
Q 000133 689 RDALSPLVVLAGSPVLEVAEQATCALANLILDS-EVSEKAIAEEIILPATRVLCEGTIS-GKTLAAAAIARLLHSRKIDY 766 (2100)
Q Consensus 689 ~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~-~~~~~~v~~~~v~~L~~ll~~~~~~-~~~~Aa~aL~~l~~~~~~~~ 766 (2100)
..++..+..++.+++++.|..++..+..++..+ .....--...-+..|+..++..++. +...+..+|..++.......
T Consensus 24 ~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 24 HKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 346677789999999999998888888777543 3332222355667778888886665 78888889988887544433
Q ss_pred hHhhhhhccCcHHHHHHhhhhcc--cccchHhHHHHHHHHHHcCCC
Q 000133 767 TITDCVNRAGTVLALVSFLESAS--GSVATSEALDALAILSRSGGA 810 (2100)
Q Consensus 767 ~~~~~~~~~g~l~~li~~l~s~~--~~v~~~~al~~L~~L~~~~~~ 810 (2100)
.+...+ ..-.++.++..+-... .... +.++++|..+.+.+..
T Consensus 104 ~l~Rei-~tp~l~~~i~~ll~l~~~~~~~-~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 104 TLTREI-ATPNLPKFIQSLLQLLQDSSCP-ETALDALATLLPHHPT 147 (165)
T ss_pred chHHHH-hhccHHHHHHHHHHHHhccccH-HHHHHHHHHHHHHCCc
Confidence 333311 1223444443333222 2444 8889999988776654
No 408
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=35.05 E-value=37 Score=25.34 Aligned_cols=28 Identities=36% Similarity=0.361 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhhcchhhhhhhhhcCChHHHHHhhcc
Q 000133 1246 GARYSAAKALESLFSADHIRNAESARQAVQPLVEILNT 1283 (2100)
Q Consensus 1246 ~~r~~Aa~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~ 1283 (2100)
..|+.|+.+|+++ +.+.+++.|+..|++
T Consensus 2 ~vR~~aa~aLg~~----------~~~~a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQL----------GDEEAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHc----------CCHhHHHHHHHHhcC
Confidence 3688999999985 556789999988875
No 409
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.87 E-value=72 Score=40.67 Aligned_cols=111 Identities=23% Similarity=0.431 Sum_probs=0.0
Q ss_pred CceeeeeccchhhhhhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeec-CCcc------
Q 000133 1980 TLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKN-KSKM------ 2052 (2100)
Q Consensus 1980 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------ 2052 (2100)
+|||---.+---|.+-|.+.-+.-.+.|....| ||-+-.+.||+|+|.|. ||--.--+.+.++||+ .+..
T Consensus 298 tltvlcaqgl~akdktg~sdpyvt~qv~ktkrr-trti~~~lnpvw~ekfh--fechnstdrikvrvwded~dlksklrq 374 (1283)
T KOG1011|consen 298 TLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRR-TRTIHQELNPVWNEKFH--FECHNSTDRIKVRVWDEDNDLKSKLRQ 374 (1283)
T ss_pred EEeeeecccceecccCCCCCCcEEEeecccchh-hHhhhhccchhhhhhee--eeecCCCceeEEEEecCcccHHHHHHH
Q ss_pred -----CCcccceEEEEEeeEEeecccccceeecCC-CCCCCCcceEEEE
Q 000133 2053 -----GKSSFGKVTIQIDRVVMLGAVAGEYTLLPE-SKSGPSRNLEIEF 2095 (2100)
Q Consensus 2053 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 2095 (2100)
+.+.+|.-.|..+-. .|...--|.|.-- .|+.-+-.+.++|
T Consensus 375 kl~resddflgqtvievrtl--sgemdvwynlekrtdksavsgairlhi 421 (1283)
T KOG1011|consen 375 KLTRESDDFLGQTVIEVRTL--SGEMDVWYNLEKRTDKSAVSGAIRLHI 421 (1283)
T ss_pred HhhhcccccccceeEEEEec--ccchhhhcchhhccchhhccceEEEEE
No 410
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=34.80 E-value=1.2e+03 Score=35.89 Aligned_cols=260 Identities=12% Similarity=0.080 Sum_probs=150.9
Q ss_pred CcchHHHHHHHHHHHHhcc-Cchh----HHHHhhhccchHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhc
Q 000133 573 LPESKVYVLDALKSMLSVV-SFSD----ILREGSAANDAVETMIKILS-STKEETQAKSASALAGIFETRKDLRESSIAV 646 (2100)
Q Consensus 573 ~~~~~~~a~~aL~~l~~~~-~~~~----~~~~~i~~~~~i~~Lv~lL~-s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~ 646 (2100)
+.++..+|+.+|..++.-. ..++ ..|.. -+.++..++. +.+.++|+-...++.++.....+ -+..
T Consensus 1150 n~~va~fAidsLrQLs~kfle~eEL~~f~FQke-----fLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~----nIkS 1220 (1780)
T PLN03076 1150 NLSIAIFAMDSLRQLSMKFLEREELANYNFQNE-----FMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN----NVKS 1220 (1780)
T ss_pred chhHHHHHHHHHHHHHHHhcchhhhhchhHHHH-----HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh----hhhc
Confidence 4457788888888876622 2222 12333 3777777664 67889999999999988754322 2233
Q ss_pred CchHHHHHh----hcCCCHHHHHHHHHHHHHHhcCCchh-H---HHHHHhCCChHHHHHHhCCC-CHHHHHHHHHHHHHH
Q 000133 647 KTLWSVMKL----LDVGSECILVEASRCLAAIFLSVREN-R---EVAAVARDALSPLVVLAGSP-VLEVAEQATCALANL 717 (2100)
Q Consensus 647 g~v~~Lv~l----L~~~~~~v~~~aa~aL~~L~~~~~~~-~---~~~~~~~~~l~~Lv~ll~~~-~~evr~~aa~aL~~L 717 (2100)
| -+.+..+ ..++++.+...|-..+..+....-.. . ...+ ...+..|.+..+.. +.++--.|...||++
T Consensus 1221 G-WktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F--~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~ 1297 (1780)
T PLN03076 1221 G-WKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF--TDCVNCLIAFTNSRFNKDISLNAIAFLRFC 1297 (1780)
T ss_pred C-cHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH--HHHHHHHHHHHhCcCcccccHHHHHHHHHH
Confidence 4 3333333 35667778888877777664321100 0 0001 23444555555443 355556777777766
Q ss_pred h----cCc------------------------HHHHH--------HHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhc
Q 000133 718 I----LDS------------------------EVSEK--------AIAEEIILPATRVLCEGTISGKTLAAAAIARLLHS 761 (2100)
Q Consensus 718 ~----~~~------------------------~~~~~--------~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~ 761 (2100)
. .++ +.... .+---++..|.++..++..++|..|...|.+++..
T Consensus 1298 ~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~ 1377 (1780)
T PLN03076 1298 ATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRN 1377 (1780)
T ss_pred HHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 2 000 00000 00112233444556666667999999999999975
Q ss_pred Cccc--hhHhhhhhccCcHHHHHHhhhhcc-----------------c--------ccchHhHHHHHHHHHHcCCCCCCC
Q 000133 762 RKID--YTITDCVNRAGTVLALVSFLESAS-----------------G--------SVATSEALDALAILSRSGGASGHV 814 (2100)
Q Consensus 762 ~~~~--~~~~~~~~~~g~l~~li~~l~s~~-----------------~--------~v~~~~al~~L~~L~~~~~~~~~~ 814 (2100)
.+.. ...-+ ....+++.++.+.++..- + .-....|+..+..|......
T Consensus 1378 yG~~Fs~~~W~-~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd---- 1452 (1780)
T PLN03076 1378 HGHLFSLPLWE-RVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYP---- 1452 (1780)
T ss_pred hhccCCHHHHH-HHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHH----
Confidence 4431 11111 244568888887765320 0 01114556666666433322
Q ss_pred CcccceeeccCCCchhhhhhhccCChhHHHHHHHHHHHH
Q 000133 815 KPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRL 853 (2100)
Q Consensus 815 ~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~a~~~L~~L 853 (2100)
.+.-.++..+.-|+.|+...|..+-..+..+|.+|
T Consensus 1453 ----~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~l 1487 (1780)
T PLN03076 1453 ----TVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRL 1487 (1780)
T ss_pred ----HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHH
Confidence 34446677888888999999999999999999999
No 411
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=34.20 E-value=2.9e+02 Score=29.29 Aligned_cols=74 Identities=16% Similarity=0.119 Sum_probs=57.9
Q ss_pred hhcChHHHHHHHhcCCchHHHHHHHHHHHhcc--cHHHHHHHHhcCCHHHHHHhhcCCC--hhHHHHHHHHHHHhhcC
Q 000133 1356 AARCVEPLVSLLVTEFSPAQHSVVRALDKLVD--DEQLAELVAAHGAVIPLVGLLYGRN--YMLHEAISRALVKLGKD 1429 (2100)
Q Consensus 1356 ~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~--~~~~~~~~~~~g~i~~L~~lL~~~~--~~vr~~A~~aL~~La~~ 1429 (2100)
...++..|...|+++++.+...|+..|..+.. .......+...+++..|..++.+.. +.|+++++..+...+..
T Consensus 35 ~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 35 PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADA 112 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 44567778888999999999999999888884 4556666777888999999988533 34899999988877654
No 412
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=33.76 E-value=4.9e+02 Score=29.35 Aligned_cols=141 Identities=16% Similarity=0.096 Sum_probs=80.7
Q ss_pred HHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 000133 563 SQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRES 642 (2100)
Q Consensus 563 ~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~ 642 (2100)
+.++++..+.+..++..|.+.+..+..-. .+.....+|.|+.+..++++.++..|...+..+....+...+.
T Consensus 11 ~~Il~~~~~~~~~vr~~Al~~l~~il~qG--------LvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~ 82 (187)
T PF12830_consen 11 KNILELCLSSDDSVRLAALQVLELILRQG--------LVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVES 82 (187)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhcC--------CCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHH
Confidence 44455555666677777777776544311 1112234899999999999999999999999999876665555
Q ss_pred HHhcCchHHHHHh---hcCCCH-HH---HHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCC--------CHHHH
Q 000133 643 SIAVKTLWSVMKL---LDVGSE-CI---LVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSP--------VLEVA 707 (2100)
Q Consensus 643 ~~~~g~v~~Lv~l---L~~~~~-~v---~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~--------~~evr 707 (2100)
-...|+ ..-.+. +..+.. .. .......+..+..+.. ..|. +++..|++.+... .++-.
T Consensus 83 ~~~~gi-~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r-~~R~-----~Fl~~l~k~f~~~~~~~~~~~~~~~l 155 (187)
T PF12830_consen 83 RYSEGI-RLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNR-KSRR-----KFLKSLLKQFDFDLTKLSSESSPSDL 155 (187)
T ss_pred HHHHHH-HHHHHHHHHhcCCccccccccchHHHHHHHHHHhccc-HhHH-----HHHHHHHHHHHhhccccccccchhHH
Confidence 444442 222221 222211 11 4556666666665433 3333 3566676666542 22333
Q ss_pred HHHHHHHHHHh
Q 000133 708 EQATCALANLI 718 (2100)
Q Consensus 708 ~~aa~aL~~L~ 718 (2100)
........||+
T Consensus 156 ~~~~Fla~nLA 166 (187)
T PF12830_consen 156 DFLLFLAENLA 166 (187)
T ss_pred HHHHHHHHHHh
Confidence 44455555554
No 413
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=32.84 E-value=1.2e+03 Score=30.35 Aligned_cols=169 Identities=15% Similarity=0.045 Sum_probs=93.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHhcCchHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCC
Q 000133 624 KSASALAGIFETRKDLRESSIAVKTLWSVMKLL-DVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSP 702 (2100)
Q Consensus 624 ~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL-~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~ 702 (2100)
.-...+.|+.+.+....+.-.-.+.+..++.+. +..++...+.+...+..+.....-+... + ...+..|+......
T Consensus 153 ~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~s-l--~~~i~vLCsi~~~~ 229 (464)
T PF11864_consen 153 DLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSES-L--SPCIEVLCSIVNSV 229 (464)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHH-H--HHHHHHHhhHhccc
Confidence 344455555555444333333445666666665 3334445566666666664422111111 1 23344555553332
Q ss_pred CHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCC------hhHHHHHHHHHHHHHhcCccchhHhhhhhccC
Q 000133 703 VLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGT------ISGKTLAAAAIARLLHSRKIDYTITDCVNRAG 776 (2100)
Q Consensus 703 ~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~------~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g 776 (2100)
+....+-.++.||+...-. ..++..|...+.+++ ..+-++|...+..++...+... +.. +...-
T Consensus 230 --~l~~~~w~~m~nL~~S~~g------~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~-~~~-l~~~~ 299 (464)
T PF11864_consen 230 --SLCKPSWRTMRNLLKSHLG------HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQG-YPS-LPFSP 299 (464)
T ss_pred --ccchhHHHHHHHHHcCccH------HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCC-cce-ecccH
Confidence 5667777888888744322 235677777774322 2256799999999998773321 111 12233
Q ss_pred --cHHHHHHhhhhcccccchHhHHHHHHHHHH
Q 000133 777 --TVLALVSFLESASGSVATSEALDALAILSR 806 (2100)
Q Consensus 777 --~l~~li~~l~s~~~~v~~~~al~~L~~L~~ 806 (2100)
.++.+...++..+..+. .+.+..+..+..
T Consensus 300 ~~vl~sl~~al~~~~~~v~-~eIl~~i~~ll~ 330 (464)
T PF11864_consen 300 SSVLPSLLNALKSNSPRVD-YEILLLINRLLD 330 (464)
T ss_pred HHHHHHHHHHHhCCCCeeh-HHHHHHHHHHHh
Confidence 66777777776656555 788888888874
No 414
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=31.10 E-value=3.1e+02 Score=29.31 Aligned_cols=108 Identities=20% Similarity=0.232 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHccCCChhHHHHHHHHHHHHhhcch-hhhhhhhccCCchHHHHHHHhcCCHHHHHHHHHHHHhhhccch-
Q 000133 9 ASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRE-NAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENE- 86 (2100)
Q Consensus 9 ~~v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~-~~~~~i~~~~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~- 86 (2100)
..+.++++..-+......+-... ..+.++++... .++. ++..|-..|+++++.++..|...|..+.+|-.
T Consensus 4 ~~~~~li~kATs~~~~~~Dw~~~-l~icD~i~~~~~~~ke-------a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~ 75 (140)
T PF00790_consen 4 SSITELIEKATSESLPSPDWSLI-LEICDLINSSPDGAKE-------AARALRKRLKHGNPNVQLLALTLLDALVKNCGP 75 (140)
T ss_dssp SHHHHHHHHHT-TTSSS--HHHH-HHHHHHHHTSTTHHHH-------HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHH
T ss_pred ChHHHHHHHHhCcCCCCCCHHHH-HHHHHHHHcCCccHHH-------HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCH
Confidence 35677788776655444444344 44555555543 4444 56789999999999999999999999987653
Q ss_pred -hhHHHHhcCChHHHHHhhcCC-CHH---HHHHHHHHHHHHhc
Q 000133 87 -LRVKVLLGGCIPPLLGLLKSS-SAE---GQIAAAKTIYAVSQ 124 (2100)
Q Consensus 87 -~~~~i~~~g~i~~Lv~lL~s~-~~~---~~~~A~~aL~~Ls~ 124 (2100)
-+..+....-+..|.+++.+. ... ++..+...|..-+.
T Consensus 76 ~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 76 RFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 345555556677788877643 333 67777777766555
No 415
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=30.98 E-value=9.6e+02 Score=28.44 Aligned_cols=75 Identities=11% Similarity=0.144 Sum_probs=44.2
Q ss_pred hhcCChHHHHHhhccCChhhHHHHHHHHHHhhcCCchhhHHHHhhhcchhHHHHHHHhhc-CChhhHHHHHHHHHHHhcC
Q 000133 1269 SARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSN-CSMELKGDAAELCGVLFGN 1347 (2100)
Q Consensus 1269 ~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~La~~~~~~~~~~~~v~~gal~~L~~lL~~~-~~~~~~~~a~~~L~~L~~~ 1347 (2100)
.+..+.|+|+.+++.+++- .. ..++-.. ...-..+++.+-.|-++.|.+++.+. -+.=+|..+..+|..+...
T Consensus 70 re~~A~~~li~l~~~~~~~-~~---~l~GD~~--tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~ 143 (249)
T PF06685_consen 70 REERALPPLIRLFSQDDDF-LE---DLFGDFI--TEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHE 143 (249)
T ss_pred hhhhhHHHHHHHHcCCcch-HH---HHHcchh--HhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHc
Confidence 5567999999999765431 11 1111111 11112223335578889999998775 3345677777888877665
Q ss_pred cc
Q 000133 1348 TR 1349 (2100)
Q Consensus 1348 ~~ 1349 (2100)
..
T Consensus 144 ~~ 145 (249)
T PF06685_consen 144 GP 145 (249)
T ss_pred CC
Confidence 43
No 416
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=30.90 E-value=44 Score=37.63 Aligned_cols=61 Identities=20% Similarity=0.348 Sum_probs=34.3
Q ss_pred ccccCCCccccccceeccccCCCCC--eEEEE-----eecCCccCCcccceEEEEEeeEEeecc--cccceeecC
Q 000133 2016 IVSTGPNPEWEESFAWSFEIPPKGQ--KLHIS-----CKNKSKMGKSSFGKVTIQIDRVVMLGA--VAGEYTLLP 2081 (2100)
Q Consensus 2016 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 2081 (2100)
|.-|+.+|+|+|+|.-.+- ++..+ +|.+. |+++..-. ..+|..-++|-+ .|. -.|.|+|..
T Consensus 65 v~yh~k~P~f~deiKi~LP-~~l~~~~HLlFtf~h~s~~~~~~~~-~~~g~a~lpL~~---~g~~i~dg~~~L~v 134 (184)
T PF14429_consen 65 VYYHNKNPQFNDEIKIQLP-PDLFPKHHLLFTFYHVSCKESKEKS-KPFGYAFLPLMD---NGTIIQDGEHELPV 134 (184)
T ss_dssp --TT-SS-EEEEEEEEEE--CCCCTTEEEEEEEEE---SSSS-SS--EEEEEEEESB----TS-B--SEEEEEEE
T ss_pred EEecCCCCCccEEEEEEcC-chhcccEEEEEEEEeeccccccCcc-ceeEEEEEEeee---CCeEecCCCEEEEE
Confidence 7889999999999999887 44444 44444 44322111 678999998877 565 566777744
No 417
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=30.46 E-value=3.9e+02 Score=35.92 Aligned_cols=127 Identities=16% Similarity=0.251 Sum_probs=80.9
Q ss_pred hhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHH-hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcC
Q 000133 569 LTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKI-LSSTKEETQAKSASALAGIFETRKDLRESSIAVK 647 (2100)
Q Consensus 569 L~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~l-L~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g 647 (2100)
+++.+..++..++..+..++.....+- ++.. .+|.+-.+ +++.+..++.++.-|++.+. +.++...-..
T Consensus 398 ~~~~~~~iQ~~~L~~lptv~e~iD~~~-vk~~-----ilP~l~~l~~~tt~~~vkvn~L~c~~~l~----q~lD~~~v~d 467 (700)
T KOG2137|consen 398 LEDSDVQIQELALQILPTVAESIDVPF-VKQA-----ILPRLKNLAFKTTNLYVKVNVLPCLAGLI----QRLDKAAVLD 467 (700)
T ss_pred hcCcchhhHHHHHHhhhHHHHhccHHH-HHHH-----HHHHhhcchhcccchHHHHHHHHHHHHHH----HHHHHHHhHH
Confidence 444455555556666665555444222 2323 37777774 56788999999999999988 3333333334
Q ss_pred chHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHH
Q 000133 648 TLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVA 707 (2100)
Q Consensus 648 ~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr 707 (2100)
.++++.+-.+.+++.+.....++..++.....+. ..+....++|.++.+...+.-...
T Consensus 468 ~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g--~ev~~~~VlPlli~ls~~~~L~~~ 525 (700)
T KOG2137|consen 468 ELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG--VEVMAENVLPLLIPLSVAPSLNGE 525 (700)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc--eeeehhhhhhhhhhhhhcccccHH
Confidence 5666666667888999999999988886654322 224456678888877766654443
No 418
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=30.27 E-value=2.3e+02 Score=28.23 Aligned_cols=54 Identities=13% Similarity=0.101 Sum_probs=44.8
Q ss_pred hcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCchhhHHHHhcCcHHHHHHHhc
Q 000133 1397 AHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILH 1451 (2100)
Q Consensus 1397 ~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k~~i~~~~~i~~lv~~L~ 1451 (2100)
..+.+..|+++++.++......++..|..+.+. |.....+.+.|+.+.+-++=.
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~-~~a~~~l~~iG~~~fL~klr~ 81 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKS-PYAAQILRDIGAVRFLSKLRP 81 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhC-cHHHHHHHHccHHHHHHHHHh
Confidence 456788999999988888999999999999998 588888889998888554433
No 419
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=30.14 E-value=1.7e+03 Score=30.94 Aligned_cols=93 Identities=19% Similarity=0.054 Sum_probs=67.0
Q ss_pred HHHHHhcCChhhHHHHHhcCchHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCch-hHHHHHHhCCChHHHHHHhCCCCH-
Q 000133 628 ALAGIFETRKDLRESSIAVKTLWSVMKLLD-VGSECILVEASRCLAAIFLSVRE-NREVAAVARDALSPLVVLAGSPVL- 704 (2100)
Q Consensus 628 aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~-~~~~~v~~~aa~aL~~L~~~~~~-~~~~~~~~~~~l~~Lv~ll~~~~~- 704 (2100)
+|+++...+++.+..+...|++..+.+.++ -.....++.+.+.+++++..... .....+....+ ..+..++..++.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~-~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDF-SVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH-HHHHHHHhhcchh
Confidence 889999999999999999999999999995 34567899999999999764421 11111111111 344445655555
Q ss_pred HHHHHHHHHHHHHhcCc
Q 000133 705 EVAEQATCALANLILDS 721 (2100)
Q Consensus 705 evr~~aa~aL~~L~~~~ 721 (2100)
+.-..++..|+.++.+.
T Consensus 573 ersY~~~siLa~ll~~~ 589 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDS 589 (699)
T ss_pred hHHHHHHHHHHHHHhCC
Confidence 78889999999888553
No 420
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=29.96 E-value=5.9e+02 Score=28.69 Aligned_cols=125 Identities=15% Similarity=0.074 Sum_probs=77.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHH
Q 000133 402 KRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAIT 481 (2100)
Q Consensus 402 i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~ 481 (2100)
++.++++..+++..++..|...+..+...+--+ -...+|.|+.+..++++.++..|...+..+...++.....-+
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvn-----P~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~ 84 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVN-----PKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRY 84 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCC-----hHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 455667777889999999999998766543111 114689999999999999999999999999765554433322
Q ss_pred hcCChHHHHHhc---cCCCH-HH---HHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhc
Q 000133 482 AAGGIPPLVQIL---ESGSA-KA---KEDSASILRNLCNHSEDIRACVESADAVPALLWLLKN 537 (2100)
Q Consensus 482 ~~g~i~~Lv~lL---~~~~~-~v---re~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~ 537 (2100)
.. |+..-.+.- ..+.. .. ...-...+..+...+...|..+ +..|++.+..
T Consensus 85 ~~-gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~ 141 (187)
T PF12830_consen 85 SE-GIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDF 141 (187)
T ss_pred HH-HHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHh
Confidence 22 233322221 11111 11 3344555666665555566554 4556666554
No 421
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=29.80 E-value=1.4e+03 Score=29.93 Aligned_cols=82 Identities=18% Similarity=0.149 Sum_probs=43.8
Q ss_pred hhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhc-CCCHHHHHHHHHHHHHhhccCccchHHHHhCCc
Q 000133 365 NQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLIT-MATNEVQEELVRALLKLCNNEGSLWRALQGREG 443 (2100)
Q Consensus 365 ~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~ 443 (2100)
.++.+..+...|..+.+-|..+......+..... ..+...+. ...++.-..-..+|..|+.++.+. ...+.+.
T Consensus 35 DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R----~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i 108 (464)
T PF11864_consen 35 DLIDPNQPSEARRAALELLIACIKRQDSSSGLMR----AEFFRDISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEI 108 (464)
T ss_pred hhcCCCCCHHHHHHHHHHHHHHHHccccccHHHH----HHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccch
Confidence 4556666666788888888777333222111111 11222333 333333445566777777776554 2235566
Q ss_pred HHHHHHhhC
Q 000133 444 IQLLISLLG 452 (2100)
Q Consensus 444 i~~Lv~lL~ 452 (2100)
.+.|...+.
T Consensus 109 ~~~L~~wl~ 117 (464)
T PF11864_consen 109 GPFLLSWLE 117 (464)
T ss_pred HHHHHHHHH
Confidence 777776664
No 422
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=29.01 E-value=58 Score=24.28 Aligned_cols=28 Identities=18% Similarity=0.438 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHhhcCCchhhHHHHhcCcHHHHHHHhcc
Q 000133 1414 MLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHE 1452 (2100)
Q Consensus 1414 ~vr~~A~~aL~~La~~~~~~k~~i~~~~~i~~lv~~L~~ 1452 (2100)
.+|..|..+|+++.... +++.|++.|.+
T Consensus 2 ~vR~~aa~aLg~~~~~~-----------a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLGDEE-----------AVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcCCHh-----------HHHHHHHHhcC
Confidence 57999999999997664 67777777654
No 423
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=28.86 E-value=1e+02 Score=32.96 Aligned_cols=45 Identities=31% Similarity=0.413 Sum_probs=31.1
Q ss_pred hHhHHHHHHHHhhcCCCcccccccccCCChHhhhhccCCCCHHHHHHHHHHHHHhhc
Q 000133 1500 GQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLL 1556 (2100)
Q Consensus 1500 ~~~~A~~~L~nL~~~~~~~~~~~~~~~~~l~~Lv~~L~~~~~~vq~~a~~aL~~l~~ 1556 (2100)
....|.+.|+. |...--++|||.+|.++++++...|+.+|.+...
T Consensus 79 s~~~Av~LLGt------------M~GGYNV~~LI~~L~~~d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 79 SPAEAVELLGT------------MLGGYNVQPLIDLLKSDDEELAEEAAEALKNTLL 123 (154)
T ss_dssp -HHHHHHHHTT------------S-SSTTHHHHHHGG--G-TTTHHHHHHHHHT--T
T ss_pred CHHHHHHHHhh------------ccCCCcHHHHHHHHcCCcHHHHHHHHHHHHhhHH
Confidence 34567888876 3444458999999999999999999999999755
No 424
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=28.58 E-value=99 Score=37.97 Aligned_cols=128 Identities=16% Similarity=0.262 Sum_probs=79.6
Q ss_pred HHHHHHHhhcCCC----ceeeeeccchhhhhhCCC--cceEEEecC--C--CCCccccccccCCCccccccceecccc-C
Q 000133 1968 EKAEFLLQCLPGT----LVVIIKRGNNMKQSVGNP--SVYCKLTLG--N--TPPRQTKIVSTGPNPEWEESFAWSFEI-P 2036 (2100)
Q Consensus 1968 ~~a~~~le~i~~~----~~~~~~r~~~~~~~~~~~--~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 2036 (2100)
-|+..-+.+++|. |-.+|-|+.++--.-|.. .+|.+|.+- | ...-.|+|++.-.+|+++|.|.-+.-. |
T Consensus 352 ~R~fq~v~~f~dl~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~ 431 (523)
T KOG3837|consen 352 TRAFQQVAFFEDLKDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGP 431 (523)
T ss_pred hhhcchhhhccccchhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCC
Confidence 3445555555442 333444444433332221 144444332 3 334458899999999999999998874 2
Q ss_pred CCCC---------eEEEEeecCCcc--CCcccceEEEEEeeEEeecccccceeecCCCCCCCCcceEEEEE
Q 000133 2037 PKGQ---------KLHISCKNKSKM--GKSSFGKVTIQIDRVVMLGAVAGEYTLLPESKSGPSRNLEIEFL 2096 (2100)
Q Consensus 2037 ~~~~---------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2096 (2100)
..|+ -+.+++.+|+.| +..-+|.+.|.+.+.=..-.+-+.|.| -|+++-----||+.+.
T Consensus 432 ~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l-~DGRK~vGGkLevKvR 501 (523)
T KOG3837|consen 432 GLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPL-KDGRKAVGGKLEVKVR 501 (523)
T ss_pred cccHHHHHHHHhcCeeEEEeeccccccccceeceeeeeehhhhcccchhhceec-cccccccCCeeEEEEE
Confidence 3443 367899999999 333449999999999999999999999 4433211112565543
No 425
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=27.91 E-value=1.2e+03 Score=28.49 Aligned_cols=205 Identities=13% Similarity=0.098 Sum_probs=121.6
Q ss_pred HHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhh
Q 000133 522 VESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGS 601 (2100)
Q Consensus 522 i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i 601 (2100)
+.++|..+.|++-+.......++.+.....++-...- +.+.-+.+-+ .+++
T Consensus 75 f~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qv----------------gtr~~tv~Yl------~t~~------- 125 (342)
T KOG1566|consen 75 FYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQV----------------GTRSPTVEYL------ETNP------- 125 (342)
T ss_pred HHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhc----------------CCcchHHHHH------HhCH-------
Confidence 4568999999999999999999988888877754221 0011011100 1111
Q ss_pred hccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchh
Q 000133 602 AANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVREN 681 (2100)
Q Consensus 602 ~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~ 681 (2100)
..+..|+..-.. .+++--.+-..|..-.+. +....-+....-..........++-++...|.++...+.......
T Consensus 126 ---e~~~~lv~~~~~-~~~iaL~cg~mlrEcirh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~ 200 (342)
T KOG1566|consen 126 ---EILDNLVKGYEN-TPEIALTCGNMLRECIRH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSV 200 (342)
T ss_pred ---HHHHHHHhhhcc-chHHHHHHHHHHHHHHhh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHH
Confidence 113333333111 233333333344443333 334444444455666666667777777777777777665543211
Q ss_pred HHHHHHhCC----ChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHH---HHHH-HcCcHHHHHHHHccCChhHHHHHHH
Q 000133 682 REVAAVARD----ALSPLVVLAGSPVLEVAEQATCALANLILDSEVS---EKAI-AEEIILPATRVLCEGTISGKTLAAA 753 (2100)
Q Consensus 682 ~~~~~~~~~----~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~---~~~v-~~~~v~~L~~ll~~~~~~~~~~Aa~ 753 (2100)
... +...+ +.+.--.++++.+-=++.++...|+.+..+.+.. .+++ ..+-+..++.++++.+..++.+|-.
T Consensus 201 vaE-fl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFh 279 (342)
T KOG1566|consen 201 VAE-FLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFH 279 (342)
T ss_pred HHH-HHHhChhhhHHHHHHHHhcccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHH
Confidence 111 22222 1333567889998889999999999998653322 2333 5689999999999999999999886
Q ss_pred HHHHHHhc
Q 000133 754 AIARLLHS 761 (2100)
Q Consensus 754 aL~~l~~~ 761 (2100)
..--....
T Consensus 280 vFKvfvAn 287 (342)
T KOG1566|consen 280 VFKVFVAN 287 (342)
T ss_pred HHHHHhcC
Confidence 65444443
No 426
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=27.29 E-value=4.6e+02 Score=29.89 Aligned_cols=138 Identities=15% Similarity=0.178 Sum_probs=86.0
Q ss_pred HHHHhCCCccchhhhccccHHHHHHhhc-----CCCHHHHHHHHHHHHHhhccCccc-hHHHHhCCcHHHHHHhhCCCCH
Q 000133 383 LASLYGNPLLSIKLENSEAKRLLVGLIT-----MATNEVQEELVRALLKLCNNEGSL-WRALQGREGIQLLISLLGLSSE 456 (2100)
Q Consensus 383 L~~L~~~~~~~~~l~~~g~i~~Lv~lL~-----~~~~~v~~~A~~aL~~L~~~~~~~-~~~i~~~g~i~~Lv~lL~s~~~ 456 (2100)
|..+++.|+.+..+.++...-.+...+. ++.+-.|..+...++.|..+...+ .+.+.....+|.++++++.+++
T Consensus 124 LQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSE 203 (315)
T COG5209 124 LQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSE 203 (315)
T ss_pred HHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhH
Confidence 3444788998887777654333333333 223457778899999998876553 4455567789999999999888
Q ss_pred HHHHHHHHHHHHhccCCcccHHHHH----hcCCh----HHHH-HhccCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 000133 457 QQQECSVALLCLLSNENDDSKWAIT----AAGGI----PPLV-QILESGSAKAKEDSASILRNLCNHSEDIRACV 522 (2100)
Q Consensus 457 ~v~~~A~~aL~nLs~~~~~~~~~i~----~~g~i----~~Lv-~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i 522 (2100)
--+.-|+..+..+-. ++..-+-+. .-.+| ..++ ++...++-..-..+.++...||.+ +..|...
T Consensus 204 lSktvaifI~qkil~-dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~-p~aR~lL 276 (315)
T COG5209 204 LSKTVAIFIFQKILG-DDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK-PHARALL 276 (315)
T ss_pred HHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC-HhHHHHH
Confidence 888888888888764 343322221 11122 2222 223445666677777777777763 5555443
No 427
>PF15573 Imm27: Immunity protein 27
Probab=27.29 E-value=3.8e+02 Score=30.43 Aligned_cols=94 Identities=20% Similarity=0.218 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhcCCHHHH-HHHHHHHHhhhccchhhHHHHhcCChHHHHHhhc
Q 000133 27 EKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVK-IQAATVLGSLCKENELRVKVLLGGCIPPLLGLLK 105 (2100)
Q Consensus 27 ~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~~~~~v~-~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~ 105 (2100)
+...++-++.++-+..+-. .-+.|+.+.+...+++. --+.+.+.+.|.+++.|. .+- +++|.
T Consensus 28 tE~E~~lli~El~K~GDFs---------vK~LLiqLMN~TkDE~vLNLCiRlFcSV~THdDL~~----~nN----l~FLs 90 (259)
T PF15573_consen 28 TEKECLLLIIELLKKGDFS---------VKNLLIQLMNQTKDEAVLNLCIRLFCSVATHDDLRD----SNN----LRFLS 90 (259)
T ss_pred hhHHHHHHHHHHHHhCCch---------hhHHHHHHHhcchhHHHHHHHHHHHHhhcchHhhhc----ccc----eehHh
Confidence 3345677888888877622 34789999988766554 458889999998877543 222 23344
Q ss_pred CCCHH-HHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhcc
Q 000133 106 SSSAE-GQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNG 152 (2100)
Q Consensus 106 s~~~~-~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~ 152 (2100)
+.+.. +-..|..|...+|. .+||.|+.++..=
T Consensus 91 ~asE~~v~TF~s~A~~tlSy---------------eVIPYLLaLleeW 123 (259)
T PF15573_consen 91 SASEFGVFTFASGAITTLSY---------------EVIPYLLALLEEW 123 (259)
T ss_pred hhhHHHHHHHHHHhhccchh---------------hHHHHHHHHHHHH
Confidence 44433 34556666666665 4799999999764
No 428
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=27.06 E-value=1.9e+02 Score=32.35 Aligned_cols=73 Identities=8% Similarity=0.113 Sum_probs=56.9
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 000133 606 AVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSV 678 (2100)
Q Consensus 606 ~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~ 678 (2100)
-+|.+.+-|....+..+--|...+..+.......+-..+-...+++|-+.|.+.++++...++.+|..|+.+.
T Consensus 39 ~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~ 111 (183)
T PF10274_consen 39 YLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSS 111 (183)
T ss_pred HHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 3788888888888888888888888876652233334555678899999999999999999999999996543
No 429
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=26.91 E-value=1.2e+02 Score=30.59 Aligned_cols=79 Identities=19% Similarity=0.133 Sum_probs=56.7
Q ss_pred hhhHHHHHHHHHHHhcCcchHHHHHhhcChHHHHHHHhcCCchHHHHHHHHHHHhcccHHHHHHHHhcCCHHHHHHhhcC
Q 000133 1331 MELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYG 1410 (2100)
Q Consensus 1331 ~~~~~~a~~~L~~L~~~~~~r~~~~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~g~i~~L~~lL~~ 1410 (2100)
..+++.+...=..+.+|.+.|.+....- -+++. ++-.....+..|..++..+..=..+++.|+++.|+.+|.+
T Consensus 26 ~~lkklvl~fek~i~kN~e~R~K~~ddP-----~KFmd--SE~dLd~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~H 98 (108)
T PF08216_consen 26 AWLKKLVLSFEKRINKNQEMRIKYPDDP-----EKFMD--SEVDLDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSH 98 (108)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhCCCCH-----HHHHH--hHHHHHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCC
Confidence 3566666776677777877776655433 22332 2334566788888888877777778899999999999999
Q ss_pred CChhHH
Q 000133 1411 RNYMLH 1416 (2100)
Q Consensus 1411 ~~~~vr 1416 (2100)
.|.++.
T Consensus 99 eN~DIa 104 (108)
T PF08216_consen 99 ENTDIA 104 (108)
T ss_pred CCccee
Confidence 887764
No 430
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.83 E-value=1.2e+03 Score=31.30 Aligned_cols=177 Identities=15% Similarity=0.095 Sum_probs=108.9
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHHhcCCCCC------------cHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhH
Q 000133 529 PALLWLLKNGSANGKEIAAKTLNHLIHKSDTA------------TISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDI 596 (2100)
Q Consensus 529 ~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~------------~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~ 596 (2100)
|.|-+.|+-.+..++..|+..+.++---.++. .-.-+..+|+++.+.+|..|..-+....+.
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~------ 250 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSK------ 250 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH------
Confidence 44555666677888888888888775433331 123367789999999999887776655442
Q ss_pred HHHhhhccch---HHHHHH-HhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHH
Q 000133 597 LREGSAANDA---VETMIK-ILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLA 672 (2100)
Q Consensus 597 ~~~~i~~~~~---i~~Lv~-lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~ 672 (2100)
+-+.+...-. +..+.. +-.+...++|-.....|-.+..++... ..-.-++|.|--++.+.+..++.++...|.
T Consensus 251 fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh---~~le~~Lpal~~~l~D~se~VRvA~vd~ll 327 (1005)
T KOG1949|consen 251 FWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSH---PLLEQLLPALRYSLHDNSEKVRVAFVDMLL 327 (1005)
T ss_pred HHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccch---hHHHHHHHhcchhhhccchhHHHHHHHHHH
Confidence 1111111111 222222 223456688888888888888763211 222345677777788999999999999988
Q ss_pred HHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 000133 673 AIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLI 718 (2100)
Q Consensus 673 ~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~ 718 (2100)
.+ .. ..-..+..-=-...++.-|.+.+.++-..-+.-+-+..
T Consensus 328 ~i-k~---vra~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~ 369 (1005)
T KOG1949|consen 328 KI-KA---VRAAKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSF 369 (1005)
T ss_pred HH-Hh---hhhhhhhccccHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 77 22 22223444445666676677666666655555555554
No 431
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=26.14 E-value=94 Score=34.89 Aligned_cols=46 Identities=24% Similarity=0.424 Sum_probs=31.7
Q ss_pred ccccCCCccccccceeccccCCCCC--eEEE-----EeecCCccCCcccceEEEEE
Q 000133 2016 IVSTGPNPEWEESFAWSFEIPPKGQ--KLHI-----SCKNKSKMGKSSFGKVTIQI 2064 (2100)
Q Consensus 2016 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~ 2064 (2100)
|+-|+.+|.|+|+|.-.+. +..-+ +|.. +|++|. .+..||..-+++
T Consensus 59 V~yH~~~P~W~EtiKi~lP-~~~~~~~HL~FtfrH~S~~~k~--~~~pfg~s~lpL 111 (189)
T cd08695 59 VLYHNNSPRWNETIKLPIP-IDKFRGSHLRFEFRHCSTKDKG--EKKLFGFSFVPL 111 (189)
T ss_pred EEEcCCCCCCceeEEEecC-hhhCCCeeEEEEEEEeeeccCC--CCCceEEEEEee
Confidence 8999999999999998776 33333 4444 566543 245677777766
No 432
>PLN00094 aconitate hydratase 2; Provisional
Probab=26.12 E-value=3.8e+02 Score=37.12 Aligned_cols=83 Identities=18% Similarity=0.141 Sum_probs=54.6
Q ss_pred hhhccCCCccccCCCccChHHHHHhhccCCHhHHHHHHHHHHHHHH--HHhcCCchhhhhHHHHHhcCcHHHHHHHHhCC
Q 000133 1886 ALFNNFPRLRATEPATLSIPHLVTALKTGSEATQEAALDALFLLRQ--AWSACPAEVSKAQSVAAADAIPLLQYLIQSGP 1963 (2100)
Q Consensus 1886 ~~~~~~h~g~cs~~~tfci~~Lv~~L~~~~~~~~eaal~aL~tL~~--~~~~~~~~~~~~~~l~~a~~i~~i~~~~~~~~ 1963 (2100)
++.+...+|+- |.|||.+|+ |..+...|-++|.+-+- |.-+- +..++++ |=+.-..+|++
T Consensus 157 ~llg~m~ggyn-------v~~l~~~l~--d~~~a~~a~~~l~~~~l~~d~~~~------v~~~~~~-gn~~a~~v~~s-- 218 (938)
T PLN00094 157 EILGTMQGGYN-------ISPLVDALD--DDELGRIAADQLSHTLLVFDAFHD------VQAKAKK-GNAYATQVMES-- 218 (938)
T ss_pred HHHhhccCCCc-------HHHHHHHhc--CHHHHHHHHHHHhhcEEeecchHH------HHHHHHc-cCHHHHHHHHH--
Confidence 34445566666 999999995 88899999999987553 33333 2333333 12333455554
Q ss_pred chhHHHHHHHHh--hcCCCceeeeeccc
Q 000133 1964 PRFQEKAEFLLQ--CLPGTLVVIIKRGN 1989 (2100)
Q Consensus 1964 ~~~~~~a~~~le--~i~~~~~~~~~r~~ 1989 (2100)
|-.|.|-.- .+|-..+||||+++
T Consensus 219 ---wa~aewf~~~~~~~~~i~~~vfkv~ 243 (938)
T PLN00094 219 ---WADAEWFTKKPPVPEKITVTVFKVT 243 (938)
T ss_pred ---HhhhhhhhcCCCCcceeEEEEEEec
Confidence 467777764 47888899999874
No 433
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=25.80 E-value=3.5e+02 Score=37.36 Aligned_cols=82 Identities=17% Similarity=0.109 Sum_probs=55.3
Q ss_pred hhccCCCccccCCCccChHHHHHhhccCCHhHHHHHHHHHHHHHH--HHhcCCchhhhhHHHHHhcCcHHHHHHHHhCCc
Q 000133 1887 LFNNFPRLRATEPATLSIPHLVTALKTGSEATQEAALDALFLLRQ--AWSACPAEVSKAQSVAAADAIPLLQYLIQSGPP 1964 (2100)
Q Consensus 1887 ~~~~~h~g~cs~~~tfci~~Lv~~L~~~~~~~~eaal~aL~tL~~--~~~~~~~~~~~~~~l~~a~~i~~i~~~~~~~~~ 1964 (2100)
+.+...+|.- |+|||.+|+++|..+...|-++|.+-+- |.-+- +..+++. =+.-..+|++
T Consensus 89 ~l~~m~gg~~-------~~~l~~~~~~~~~~~a~~a~~~l~~~~~~~~~~~~------~~~~~~~--n~~a~~v~~s--- 150 (844)
T TIGR00117 89 LLGTMQGGYN-------VHPLIDALDSQDANIAPIAAKALSHTLLVFDNFYD------VEEKSKT--NEYAKQVMQS--- 150 (844)
T ss_pred HHhhccCCCC-------HHHHHHHHhCCCHHHHHHHHHHHhceEEEeechHH------HHHHhhc--CHHHHHHHHH---
Confidence 3345556665 9999999999999999999999997664 33333 3333333 3344566665
Q ss_pred hhHHHHHHHHhh--cCCCceeeeecc
Q 000133 1965 RFQEKAEFLLQC--LPGTLVVIIKRG 1988 (2100)
Q Consensus 1965 ~~~~~a~~~le~--i~~~~~~~~~r~ 1988 (2100)
|-.|.|-.-| +|-..+++||+.
T Consensus 151 --wa~aewf~~~~~~~~~i~g~V~k~ 174 (844)
T TIGR00117 151 --WADAEWFLNKPALAEKITVTVFKV 174 (844)
T ss_pred --HhhhhhhhcCCCcchheEEEEEEe
Confidence 4667776543 566677888865
No 434
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=25.39 E-value=3.4e+02 Score=32.88 Aligned_cols=31 Identities=32% Similarity=0.425 Sum_probs=24.5
Q ss_pred cHHHHHHHhhcCChhHHHHHHHHHHHHhcCC
Q 000133 527 AVPALLWLLKNGSANGKEIAAKTLNHLIHKS 557 (2100)
Q Consensus 527 ~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~ 557 (2100)
++|+++.++++.++..|..++.+|..+...-
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~ 150 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKV 150 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence 5788888888888888888888888876543
No 435
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=23.85 E-value=3.3e+02 Score=35.26 Aligned_cols=79 Identities=22% Similarity=0.145 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHhhccCccchHHHHhCCcHH-HHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHh
Q 000133 414 NEVQEELVRALLKLCNNEGSLWRALQGREGIQ-LLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQI 492 (2100)
Q Consensus 414 ~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~-~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~l 492 (2100)
-..|..|+++|+.++..=+.. .+ ..... .|+..|+++...-|..++.++...+...........-....+.|...
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~--~~--~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~ 176 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPES--SL--QEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEI 176 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccc--hH--HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHH
Confidence 356788999999988763221 00 01223 68889999988888888888888775332211100001133556666
Q ss_pred ccCC
Q 000133 493 LESG 496 (2100)
Q Consensus 493 L~~~ 496 (2100)
|.++
T Consensus 177 L~~~ 180 (441)
T PF12054_consen 177 LENP 180 (441)
T ss_pred HcCC
Confidence 6633
No 436
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=23.35 E-value=92 Score=34.13 Aligned_cols=65 Identities=25% Similarity=0.367 Sum_probs=48.8
Q ss_pred EEEecCC---CCCccccccccCCCccccccceeccc--cCCCCCeEEEEeecCCccCC-cccceEEEEEee
Q 000133 2002 CKLTLGN---TPPRQTKIVSTGPNPEWEESFAWSFE--IPPKGQKLHISCKNKSKMGK-SSFGKVTIQIDR 2066 (2100)
Q Consensus 2002 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 2066 (2100)
|.+-||+ +.|.+|+.++-+..+.|||-.+|... .-|.+-+|.|.+++.+.-|+ .-+|.++|+|=+
T Consensus 36 ~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd 106 (159)
T cd08397 36 CQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN 106 (159)
T ss_pred EEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence 3555653 45778888888888999997777654 45778899999999765544 467999999854
No 437
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=23.27 E-value=1.2e+02 Score=30.42 Aligned_cols=70 Identities=20% Similarity=0.265 Sum_probs=45.7
Q ss_pred ceeeeeccchhhhhhCCC--c--ceEEEecCCCC---CccccccccCCCccccccceeccc--cCCCCCeEEEEeecCC
Q 000133 1981 LVVIIKRGNNMKQSVGNP--S--VYCKLTLGNTP---PRQTKIVSTGPNPEWEESFAWSFE--IPPKGQKLHISCKNKS 2050 (2100)
Q Consensus 1981 ~~~~~~r~~~~~~~~~~~--~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 2050 (2100)
+.+++....+..-.+..+ . .-+.+-||+.+ |.+|+-+.-+..|.|||-.+|... .-|.+-+|.|.+++..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 445555555554443332 2 33355667543 678888888888999998877544 3467779999988743
No 438
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=23.21 E-value=1.2e+02 Score=34.14 Aligned_cols=63 Identities=16% Similarity=0.279 Sum_probs=38.1
Q ss_pred EEEecCCCCCcccc----ccccCCCccccccceeccccCCCCC-eEEEEe-----ecCCccCCcccceEEEEE
Q 000133 2002 CKLTLGNTPPRQTK----IVSTGPNPEWEESFAWSFEIPPKGQ-KLHISC-----KNKSKMGKSSFGKVTIQI 2064 (2100)
Q Consensus 2002 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~ 2064 (2100)
+.|-.|.|.+-.+. |.-|+.+|.|+|+|.-.+...-..+ +|.... +++..-....||..-+++
T Consensus 41 ~~i~~gsg~~~~se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL 113 (196)
T cd08694 41 GVISLGAGEEPIDEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKL 113 (196)
T ss_pred eeEEcCCCCCcceeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEee
Confidence 46666766655443 6789999999999987765222222 444444 332211345677776666
No 439
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=22.85 E-value=87 Score=34.22 Aligned_cols=64 Identities=19% Similarity=0.290 Sum_probs=45.1
Q ss_pred EEEecCCC---CCccccccccCCCccccccceec--cccCCCCCeEEEEeecCCcc-C--C--cccceEEEEEee
Q 000133 2002 CKLTLGNT---PPRQTKIVSTGPNPEWEESFAWS--FEIPPKGQKLHISCKNKSKM-G--K--SSFGKVTIQIDR 2066 (2100)
Q Consensus 2002 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~--~--~~~~~~~~~~~~ 2066 (2100)
+.+-||+. .|++|+-|+. .+|.|+|-.+|. +-.-|.+-+|.|.+++...- + + .-+|.++|+|=+
T Consensus 32 v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 32 TGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred EEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEEC
Confidence 35556643 5778887776 789999988884 44568888999999884421 1 1 338999999854
No 440
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.70 E-value=2.5e+03 Score=30.53 Aligned_cols=220 Identities=15% Similarity=0.160 Sum_probs=129.0
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc---CchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCC
Q 000133 614 LSSTKEETQAKSASALAGIFETRKDLRESSIAV---KTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARD 690 (2100)
Q Consensus 614 L~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~---g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~ 690 (2100)
.++.+..+|..+...|..++.. +.. +..... .+...|...+++.+..++...+.+|..|....+..... ++. .
T Consensus 663 e~~~~~~vQkK~yrlL~~l~~~-~s~-~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~-~i~-k 738 (1176)
T KOG1248|consen 663 ENSSSTKVQKKAYRLLEELSSS-PSG-EGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCD-LIP-K 738 (1176)
T ss_pred hccccHHHHHHHHHHHHHHhcC-Cch-hhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHH-HHH-H
Confidence 3556899999999999999987 221 111111 23445555566667778888888988887655411111 222 2
Q ss_pred ChHHHHHHhCCCCHHHHHHHHHHHHHHhc-------CcHHHHHHHHcCcHHHHHHHHccC--ChhHHHHH--HHHHHHHH
Q 000133 691 ALSPLVVLAGSPVLEVAEQATCALANLIL-------DSEVSEKAIAEEIILPATRVLCEG--TISGKTLA--AAAIARLL 759 (2100)
Q Consensus 691 ~l~~Lv~ll~~~~~evr~~aa~aL~~L~~-------~~~~~~~~v~~~~v~~L~~ll~~~--~~~~~~~A--a~aL~~l~ 759 (2100)
.++-++-.++..+...|+.|-..|.+|.. +++. .+..+...+..+..+ ....+.-+ .-++..++
T Consensus 739 ~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-----~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il 813 (1176)
T KOG1248|consen 739 LIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP-----ASAILNEFLSIISAGLVGDSTRVVASDIVAITHIL 813 (1176)
T ss_pred HHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc-----hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 33444444477888899999888888862 1111 112344444444333 11122222 33444444
Q ss_pred hcCccchhHhhhhhccCcHHHHHHhhhhcccccchHhHHHHHHHHHHcCCCCCCCCcccceeeccCCCchhhhhhhccCC
Q 000133 760 HSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADAT 839 (2100)
Q Consensus 760 ~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~~~~al~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~ 839 (2100)
..... +.+.....+.+..+.-.+.+.+.+++ .-|+..+..+.. .-|...+..-.+..++.+.+.+++.+
T Consensus 814 ~e~~~---~ld~~~l~~li~~V~~~L~s~sreI~-kaAI~fikvlv~-------~~pe~~l~~~~~~LL~sll~ls~d~k 882 (1176)
T KOG1248|consen 814 QEFKN---ILDDETLEKLISMVCLYLASNSREIA-KAAIGFIKVLVY-------KFPEECLSPHLEELLPSLLALSHDHK 882 (1176)
T ss_pred HHHhc---cccHHHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHHHH-------cCCHHHHhhhHHHHHHHHHHHHHhhh
Confidence 32221 11211223334444455566667777 888887776642 22333455556678888889999999
Q ss_pred hhHHHHHHHHHHHH
Q 000133 840 PLLQDKAIEILSRL 853 (2100)
Q Consensus 840 ~~~~~~a~~~L~~L 853 (2100)
..++.+...+|++|
T Consensus 883 ~~~r~Kvr~LlekL 896 (1176)
T KOG1248|consen 883 IKVRKKVRLLLEKL 896 (1176)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999998
No 441
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=22.61 E-value=8.6e+02 Score=38.19 Aligned_cols=264 Identities=16% Similarity=0.151 Sum_probs=142.9
Q ss_pred CChhhHHHHHHHHHHHhcCcchHHHHHhhcC--hHHHHHHH-----hcCCchHHHHHHHHHHHhcccHHHHHHHHhcCCH
Q 000133 1329 CSMELKGDAAELCGVLFGNTRIRSTVAAARC--VEPLVSLL-----VTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAV 1401 (2100)
Q Consensus 1329 ~~~~~~~~a~~~L~~L~~~~~~r~~~~~~~~--i~~Lv~lL-----~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~g~i 1401 (2100)
.+.+.+..+...+..++.......+...... +..++..+ .++++..+......+. +.........+.+
T Consensus 493 ~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~-----~~~~~~laQ~~~l 567 (2341)
T KOG0891|consen 493 DDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN-----ERFDAQLAQPDLL 567 (2341)
T ss_pred ccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc-----cchhhhhcCchhH
Confidence 4667777777666666665544222222211 22222222 3466666655554443 1122223455667
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHhhcCCchhhHHHHhcCcHHHHHHHhccCChhHHHHHHHHHHHHHhccCCccccccc
Q 000133 1402 IPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAA 1481 (2100)
Q Consensus 1402 ~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k~~i~~~~~i~~lv~~L~~~~~~~~~~aa~lL~~Ls~~~~~~~~~~~~ 1481 (2100)
..+...+.++...++..+...++.++..+|.....-.....+...-++..+.-.......+..+..+............+
T Consensus 568 r~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v~ 647 (2341)
T KOG0891|consen 568 RLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLISPYVG 647 (2341)
T ss_pred HHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhcC
Confidence 77888888999999999999999999876633222122222333322322222222222232332222222111112344
Q ss_pred CchHHHHHHhccCCCCchhHhHHHHHHHHhhcCCCcccccccccCCChHhhhhcc-CCCCHHHHHHHHHHHHHhhccccc
Q 000133 1482 KVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLL-DSPAPAVQQLAAELLSHLLLEEQL 1560 (2100)
Q Consensus 1482 ~~v~~Ll~ll~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~~~~~~~~l~~Lv~~L-~~~~~~vq~~a~~aL~~l~~~~~~ 1560 (2100)
..+-.++..+.+++ .-+.+.+..++..|.......... ..+ ..+.-+...+ ..++..-+..+.++++++....-+
T Consensus 648 ~~l~~~~~~~~~~~--s~~~~~~~~~~~eL~~v~g~~~~~-~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~ 723 (2341)
T KOG0891|consen 648 PILLVLLPKLQDPS--SGVEKAVLETIGELCAVGGEEMVK-WVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGY 723 (2341)
T ss_pred chHHHHHHHHhccc--hhhHHHHHHHHHHHHHhccchhhh-ccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccce
Confidence 45566666666555 667777888888886554422111 011 2333333333 355667788899999999775444
Q ss_pred c--ccccccCchHHHHHHhcc-CCHHHHHHHHHHHHHhhcCChh
Q 000133 1561 Q--KDPVTQQVIGPLIRVLGS-GIHILQQRAVKALVSIALTWPN 1601 (2100)
Q Consensus 1561 ~--~~l~~~g~i~~Lv~lL~s-~~~~vr~~Al~AL~~Ls~~~~n 1601 (2100)
- ........+..|+..+.+ -...+|..+++.++++....+.
T Consensus 724 ~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d~~ 767 (2341)
T KOG0891|consen 724 VVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALDPY 767 (2341)
T ss_pred EecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccchh
Confidence 2 122233445556655544 4467899999999988877665
No 442
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=22.58 E-value=77 Score=31.92 Aligned_cols=41 Identities=27% Similarity=0.364 Sum_probs=35.2
Q ss_pred HHHHHHHHhhhccchhhHHHHhcCChHHHHHhhcCCCHHHH
Q 000133 72 IQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQ 112 (2100)
Q Consensus 72 ~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~ 112 (2100)
-.....+..|+..++....++..|+++.|+.+|.++|.+..
T Consensus 64 d~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 64 DEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 34566777888889999999999999999999999998864
No 443
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=22.20 E-value=80 Score=33.84 Aligned_cols=64 Identities=20% Similarity=0.371 Sum_probs=45.2
Q ss_pred EEecCCC----CCccccccccC-CCccccccceecc--ccCCCCCeEEEEeecCCccCC-----cccceEEEEEee
Q 000133 2003 KLTLGNT----PPRQTKIVSTG-PNPEWEESFAWSF--EIPPKGQKLHISCKNKSKMGK-----SSFGKVTIQIDR 2066 (2100)
Q Consensus 2003 ~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 2066 (2100)
.+-||+. |.+.|++++.+ ..|.|||-.+|.+ -.-|..-+|.|.+.....-.+ ..+|.+.++|=+
T Consensus 9 ~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd 84 (142)
T PF00792_consen 9 QLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFD 84 (142)
T ss_dssp EEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-
T ss_pred EEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeEC
Confidence 4445532 34478888888 9999999888874 456888899999998666544 478999999754
No 444
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.19 E-value=84 Score=37.84 Aligned_cols=64 Identities=19% Similarity=0.202 Sum_probs=54.8
Q ss_pred HHHHHHHHhhccCccchHHHHhCCcHHHHHHh--hCCCCHHHHHHHHHHHHHhccCCcccHHHHHh
Q 000133 419 ELVRALLKLCNNEGSLWRALQGREGIQLLISL--LGLSSEQQQECSVALLCLLSNENDDSKWAITA 482 (2100)
Q Consensus 419 ~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~l--L~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~ 482 (2100)
+..+.+++||..+++.+..+.+.||++.++.- +.+.+|-+++....++.+|..++.+++..+..
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 47789999999999999999999999988774 45678999999999999999888888776654
No 445
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=21.94 E-value=88 Score=40.39 Aligned_cols=64 Identities=19% Similarity=0.359 Sum_probs=43.8
Q ss_pred EecCCCCCc---cccccccCCCccccccceeccccCCCC--CeEEEEeecCCccCC-cccceEEEEEeeE
Q 000133 2004 LTLGNTPPR---QTKIVSTGPNPEWEESFAWSFEIPPKG--QKLHISCKNKSKMGK-SSFGKVTIQIDRV 2067 (2100)
Q Consensus 2004 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 2067 (2100)
-+.|++.++ .|-|++++.+|+|..-.-=....-.++ -.+.|+|++++..|| +..|++.-+...+
T Consensus 165 ~~~~d~s~~~~~~tEv~~n~l~p~w~~~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~ 234 (529)
T KOG1327|consen 165 KRVDDGSTQMLYRTEVVKNTLNPQWAPFSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSEL 234 (529)
T ss_pred EecCCCceeeccccceeccCCCCcccccccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHh
Confidence 344566554 466999999999986433222222222 267799999999999 7779998665554
No 446
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.24 E-value=2e+03 Score=29.28 Aligned_cols=144 Identities=17% Similarity=0.104 Sum_probs=87.1
Q ss_pred hhHHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHhhcChHHHHHHHhcC-CchHHHHHHHHHHHhcccHHHHHHH
Q 000133 1317 AVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTE-FSPAQHSVVRALDKLVDDEQLAELV 1395 (2100)
Q Consensus 1317 al~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~~~~~~~i~~Lv~lL~~~-~~~~~~~A~~aL~~L~~~~~~~~~~ 1395 (2100)
-++.|++-|-.+.|...+..|.+.|..+..+++...+. --++..+ .+-...-|...|.++..+..-....
T Consensus 6 qLe~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskC---------qlll~~gs~pYs~mlAst~L~Klvs~~t~lpl~ 76 (1082)
T KOG1410|consen 6 QLESLCKDLYESTDPTARHRAEKALAELSESPECLSKC---------QLLLERGSYPYSQMLASTCLMKLVSRKTPLPLE 76 (1082)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHH---------HHHHHcCCCchHHHHHHHHHHHHHcCCCCCcHH
Confidence 46778887777778889999999999999888754332 2234333 3445666777777776321111111
Q ss_pred HhcCCHHHHHHhhcCCChh----HHHHHHHHHHHhhcC--CchhhHHHHhcCcHHHHHHHhccCChhHHHHHHHHHHHHH
Q 000133 1396 AAHGAVIPLVGLLYGRNYM----LHEAISRALVKLGKD--RPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILT 1469 (2100)
Q Consensus 1396 ~~~g~i~~L~~lL~~~~~~----vr~~A~~aL~~La~~--~~~~k~~i~~~~~i~~lv~~L~~~~~~~~~~aa~lL~~Ls 1469 (2100)
-..++-..++.++..+.|. |...-+..++.+++- -++.|.+.+=.+.+..+.+.|..+..+.+.....+|-.|.
T Consensus 77 qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLv 156 (1082)
T KOG1410|consen 77 QRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLV 156 (1082)
T ss_pred HHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHH
Confidence 1222344567777665544 334444455555543 1355666666778889999998876666665555555554
Done!