Query 000133
Match_columns 2100
No_of_seqs 869 out of 3877
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 18:50:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000133.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000133hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3now_A UNC-45 protein, SD10334 100.0 4.6E-47 1.6E-51 502.5 64.3 712 5-810 2-786 (810)
2 3now_A UNC-45 protein, SD10334 100.0 1.1E-36 3.9E-41 403.4 58.1 661 11-763 51-785 (810)
3 2z6h_A Catenin beta-1, beta-ca 100.0 1.2E-36 4.1E-41 412.4 49.7 531 53-746 13-552 (644)
4 1jdh_A Beta-catenin; beta-cate 100.0 6.2E-37 2.1E-41 407.1 44.5 505 53-674 16-528 (529)
5 2z6g_A B-catenin; FULL-length, 100.0 1.2E-36 4E-41 417.7 47.3 563 11-746 117-688 (780)
6 1jdh_A Beta-catenin; beta-cate 100.0 7.2E-36 2.5E-40 396.9 45.2 508 92-758 14-528 (529)
7 2z6g_A B-catenin; FULL-length, 100.0 3.8E-36 1.3E-40 412.6 43.5 545 53-764 114-667 (780)
8 2z6h_A Catenin beta-1, beta-ca 100.0 3.7E-35 1.3E-39 397.8 46.0 512 91-763 10-530 (644)
9 3ul1_B Importin subunit alpha- 100.0 1.1E-33 3.7E-38 371.2 38.2 417 401-859 58-482 (510)
10 3tpo_A Importin subunit alpha- 100.0 6.6E-33 2.3E-37 366.0 40.5 418 400-859 76-501 (529)
11 3ul1_B Importin subunit alpha- 100.0 1.4E-31 4.7E-36 351.2 42.5 409 186-719 58-478 (510)
12 3l6x_A Catenin delta-1; cateni 100.0 2E-31 7E-36 342.6 37.0 398 93-557 46-478 (584)
13 3tpo_A Importin subunit alpha- 100.0 1E-30 3.6E-35 345.0 44.1 410 185-719 76-497 (529)
14 3l6x_A Catenin delta-1; cateni 100.0 1.5E-30 5E-35 334.7 35.6 380 183-693 46-491 (584)
15 3nmz_A APC variant protein; pr 100.0 8.3E-31 2.8E-35 330.9 31.6 369 52-557 30-452 (458)
16 4b8j_A Importin subunit alpha- 100.0 2.2E-29 7.4E-34 333.9 43.3 417 400-858 74-499 (528)
17 4b8j_A Importin subunit alpha- 100.0 4.1E-29 1.4E-33 331.3 44.7 410 185-720 74-497 (528)
18 1wa5_B Importin alpha subunit; 100.0 4.7E-29 1.6E-33 330.5 43.1 421 399-858 86-513 (530)
19 1xm9_A Plakophilin 1; armadill 100.0 1.5E-29 5E-34 326.6 35.5 417 95-558 2-452 (457)
20 3nmz_A APC variant protein; pr 100.0 7.2E-30 2.5E-34 322.4 30.8 391 187-680 34-454 (458)
21 1wa5_B Importin alpha subunit; 100.0 1.5E-28 5E-33 325.8 43.8 413 183-720 85-511 (530)
22 2jdq_A Importin alpha-1 subuni 100.0 6.1E-28 2.1E-32 313.5 41.3 410 186-721 21-445 (450)
23 1xm9_A Plakophilin 1; armadill 100.0 1.7E-28 5.8E-33 316.7 31.8 357 360-723 4-453 (457)
24 2jdq_A Importin alpha-1 subuni 100.0 3.9E-27 1.3E-31 305.8 40.9 401 401-806 21-443 (450)
25 3nmw_A APC variant protein; AR 99.9 2E-25 6.8E-30 274.3 25.1 269 415-722 47-337 (354)
26 3nmw_A APC variant protein; AR 99.9 3.6E-25 1.2E-29 272.1 25.4 273 375-681 48-339 (354)
27 3opb_A SWI5-dependent HO expre 99.9 9.3E-22 3.2E-26 254.7 50.5 446 200-744 227-760 (778)
28 1u6g_C TIP120 protein, CAND1; 99.9 2.9E-20 1E-24 271.2 64.0 1044 372-1599 19-1187(1230)
29 3opb_A SWI5-dependent HO expre 99.9 2.9E-21 9.8E-26 250.1 43.0 523 56-676 170-728 (778)
30 4fdd_A Transportin-1; heat rep 99.9 7.7E-20 2.6E-24 256.5 46.1 743 6-853 10-822 (852)
31 4hxt_A De novo protein OR329; 99.9 4.9E-21 1.7E-25 227.1 27.8 243 400-679 2-244 (252)
32 4hxt_A De novo protein OR329; 99.9 7.6E-21 2.6E-25 225.5 27.3 241 442-720 2-242 (252)
33 4db8_A Armadillo-repeat protei 99.9 6.6E-21 2.3E-25 226.3 23.2 240 400-676 12-251 (252)
34 1u6g_C TIP120 protein, CAND1; 99.9 3E-19 1E-23 260.6 45.6 1033 402-1682 8-1136(1230)
35 4fdd_A Transportin-1; heat rep 99.9 7.5E-20 2.6E-24 256.6 36.2 708 56-859 12-788 (852)
36 4db8_A Armadillo-repeat protei 99.9 1.9E-20 6.4E-25 222.3 23.1 239 442-718 12-250 (252)
37 1b3u_A Protein (protein phosph 99.8 1.1E-18 3.8E-23 234.6 42.7 567 97-759 12-586 (588)
38 1b3u_A Protein (protein phosph 99.8 3.5E-18 1.2E-22 229.7 46.5 575 5-718 6-586 (588)
39 1qgr_A Protein (importin beta 99.8 8.6E-17 2.9E-21 227.1 44.4 755 58-901 5-872 (876)
40 4db6_A Armadillo repeat protei 99.8 2.6E-18 9E-23 197.6 23.2 199 399-634 11-209 (210)
41 4db6_A Armadillo repeat protei 99.8 4.8E-18 1.6E-22 195.5 23.4 199 441-676 11-209 (210)
42 2bpt_A Importin beta-1 subunit 99.8 1.8E-15 6.1E-20 213.2 50.5 768 9-853 4-855 (861)
43 2bpt_A Importin beta-1 subunit 99.8 8.1E-16 2.8E-20 216.7 46.3 750 58-900 8-857 (861)
44 3tt9_A Plakophilin-2; cell adh 99.8 3E-18 1E-22 195.5 15.8 205 95-310 8-231 (233)
45 3tt9_A Plakophilin-2; cell adh 99.8 8E-18 2.7E-22 192.0 17.7 196 359-556 9-230 (233)
46 1qgr_A Protein (importin beta 99.7 1.9E-15 6.5E-20 213.3 42.4 765 11-853 3-869 (876)
47 1xqr_A HSPBP1 protein; armadil 99.7 1.4E-16 4.9E-21 190.3 24.8 186 456-679 54-241 (296)
48 1xqr_A HSPBP1 protein; armadil 99.7 7.4E-17 2.5E-21 192.8 16.3 182 375-556 56-239 (296)
49 3grl_A General vesicular trans 99.7 4E-13 1.4E-17 169.6 42.0 475 226-802 20-544 (651)
50 2vgl_B AP-2 complex subunit be 99.6 8.8E-13 3E-17 175.8 43.1 518 53-724 12-537 (591)
51 2vgl_B AP-2 complex subunit be 99.6 3.1E-13 1.1E-17 180.2 31.9 464 360-900 15-493 (591)
52 3grl_A General vesicular trans 99.5 1.2E-11 4E-16 156.5 39.6 444 97-700 23-527 (651)
53 1w63_A Adapter-related protein 99.5 5.1E-11 1.7E-15 159.3 40.3 485 55-722 71-580 (618)
54 1oyz_A Hypothetical protein YI 99.5 3.1E-12 1E-16 154.0 23.8 253 440-756 21-278 (280)
55 1oyz_A Hypothetical protein YI 99.4 4.5E-12 1.5E-16 152.6 23.1 256 398-715 21-278 (280)
56 1w63_A Adapter-related protein 99.3 1.9E-10 6.4E-15 153.8 32.6 464 401-953 71-576 (618)
57 3ltm_A Alpha-REP4; protein eng 99.3 1.5E-10 5.1E-15 132.7 20.8 190 398-637 17-206 (211)
58 3ltj_A Alpharep-4; protein eng 99.2 2.7E-10 9.4E-15 129.4 20.0 185 399-633 13-197 (201)
59 1ibr_B P95, importin beta-1 su 99.2 7.6E-10 2.6E-14 143.3 25.3 374 1230-1617 34-457 (462)
60 3ltm_A Alpha-REP4; protein eng 99.2 2.6E-10 8.8E-15 130.7 18.4 190 1356-1600 17-206 (211)
61 2vgl_A Adaptor protein complex 99.2 7.8E-08 2.7E-12 127.9 43.5 496 53-720 73-590 (621)
62 3ltj_A Alpharep-4; protein eng 99.2 5.4E-10 1.8E-14 127.0 19.4 184 526-759 14-197 (201)
63 1ibr_B P95, importin beta-1 su 99.1 2.8E-09 9.6E-14 138.0 27.4 406 189-699 5-456 (462)
64 3l9b_A Otoferlin; C2-domain, b 99.0 1.5E-10 5.1E-15 117.5 3.7 112 1980-2095 22-136 (144)
65 1rlw_A Phospholipase A2, CALB 99.0 3.5E-10 1.2E-14 117.8 6.5 103 1978-2081 2-111 (126)
66 2vgl_A Adaptor protein complex 99.0 1.7E-07 5.9E-12 124.6 32.7 470 401-953 75-588 (621)
67 2dmh_A Myoferlin; beta-sandwic 98.9 1E-09 3.4E-14 116.6 7.2 122 1977-2099 5-133 (140)
68 2fk9_A Protein kinase C, ETA t 98.9 2.7E-10 9.4E-15 121.6 2.5 114 1976-2098 26-156 (157)
69 4ady_A RPN2, 26S proteasome re 98.8 1.6E-06 5.4E-11 115.5 31.1 339 365-762 365-721 (963)
70 3b7y_A E3 ubiquitin-protein li 98.7 1.2E-08 4E-13 110.1 8.4 120 1977-2098 18-152 (153)
71 4gmo_A Putative uncharacterize 98.7 1.8E-06 6.2E-11 116.4 31.6 199 54-256 34-257 (684)
72 2ep6_A MCTP2 protein; beta san 98.7 5.4E-09 1.8E-13 109.8 5.1 114 1978-2097 12-132 (133)
73 3rdl_A Protein kinase C alpha 98.7 1.7E-09 5.9E-14 114.4 1.2 113 1978-2092 15-134 (137)
74 3m7f_B E3 ubiquitin-protein li 98.7 1.1E-08 3.8E-13 113.0 6.9 120 1978-2099 7-141 (176)
75 2b3r_A Phosphatidylinositol-4- 98.7 6.6E-09 2.2E-13 109.1 4.5 105 1978-2082 19-131 (134)
76 1gmi_A Protein kinase C, epsil 98.7 3.9E-09 1.3E-13 111.3 2.7 113 1977-2098 4-132 (136)
77 1v27_A Regulating synaptic mem 98.7 2.2E-08 7.5E-13 106.4 7.5 105 1978-2083 20-135 (141)
78 3kwu_A MUNC13-1; calcium bindi 98.7 2.8E-08 9.6E-13 106.5 7.9 102 1978-2084 16-131 (148)
79 2enp_A B/K protein; C2 type 1, 98.7 1E-08 3.5E-13 109.8 4.4 107 1978-2084 25-144 (147)
80 3fbk_A RGS3, RGP3, regulator o 98.7 8.5E-09 2.9E-13 111.1 3.7 114 1978-2092 26-147 (153)
81 1wfj_A Putative elicitor-respo 98.6 9.6E-09 3.3E-13 108.4 3.9 117 1978-2099 9-130 (136)
82 1a25_A CALB, protein kinase C 98.6 5.2E-09 1.8E-13 112.3 1.8 111 1977-2089 29-146 (149)
83 2d8k_A Synaptotagmin VII; exoc 98.6 1.5E-08 5.1E-13 107.6 5.2 105 1978-2083 25-137 (141)
84 4ady_A RPN2, 26S proteasome re 98.6 3.1E-06 1.1E-10 112.6 27.1 294 412-763 370-679 (963)
85 1wfm_A Synaptotagmin XIII; C2 98.6 2.7E-08 9.3E-13 105.0 6.2 106 1978-2084 25-135 (138)
86 2q3x_A Regulating synaptic mem 98.6 9.8E-09 3.3E-13 112.7 2.8 105 1978-2084 29-142 (171)
87 3f04_A Synaptotagmin-1; C2A, c 98.6 2.3E-08 7.9E-13 106.5 4.6 104 1978-2081 33-142 (143)
88 1rh8_A Piccolo protein; beta-s 98.6 1.3E-08 4.4E-13 108.3 2.1 106 1978-2083 17-140 (142)
89 3pyc_A E3 ubiquitin-protein li 98.6 4E-08 1.4E-12 103.0 5.5 116 1979-2097 5-131 (132)
90 1rsy_A Synaptotagmin I; calciu 98.5 4.3E-08 1.5E-12 105.5 5.0 103 1978-2080 41-149 (152)
91 2bwq_A Regulating synaptic mem 98.5 2.4E-08 8.2E-13 104.2 2.9 101 1978-2079 17-128 (129)
92 3fdw_A Synaptotagmin-like prot 98.5 2.4E-08 8.2E-13 107.0 2.9 106 1978-2083 22-136 (148)
93 2dmg_A KIAA1228 protein; beta- 98.5 5.4E-08 1.8E-12 103.5 4.7 106 1978-2084 23-138 (142)
94 4gmo_A Putative uncharacterize 98.5 4.7E-07 1.6E-11 122.1 14.2 216 442-675 34-257 (684)
95 1ugk_A Synaptotagmin IV, KIAA1 98.5 9.8E-08 3.4E-12 100.8 5.3 109 1978-2086 21-138 (138)
96 2nq3_A Itchy homolog E3 ubiqui 98.4 6.6E-08 2.2E-12 105.8 3.8 103 1976-2082 33-143 (173)
97 2z0u_A WW domain-containing pr 98.4 3.9E-08 1.3E-12 105.6 0.5 103 1978-2080 42-154 (155)
98 2chd_A Rabphilin-3A, exophilin 98.4 6.9E-08 2.4E-12 102.6 1.1 94 1978-2071 28-130 (142)
99 2cjt_A UNC-13 homolog A, MUNC1 98.3 1.7E-07 5.8E-12 97.6 3.7 86 1979-2071 5-92 (131)
100 2iw3_A Elongation factor 3A; a 98.3 1.3E-05 4.6E-10 108.3 21.5 293 406-718 20-323 (986)
101 2cm5_A Rabphilin-3A; protein t 98.3 3E-07 1E-11 100.5 4.4 101 1978-2080 36-144 (166)
102 2r83_A Synaptotagmin-1; C2A-C2 98.3 8E-07 2.7E-11 106.6 7.9 120 1978-2097 18-145 (284)
103 1w15_A Synaptotagmin IV; metal 98.3 2.6E-07 8.9E-12 99.5 2.8 102 1978-2081 29-138 (153)
104 3nsj_A Perforin-1; pore formin 98.2 7.1E-07 2.4E-11 114.2 6.0 97 1978-2079 393-491 (540)
105 3n5a_A Synaptotagmin-7; calciu 98.2 3.6E-07 1.2E-11 96.5 2.7 100 1978-2079 15-122 (138)
106 2cjs_A UNC-13 homolog A, MUNC1 98.2 6.1E-07 2.1E-11 97.3 4.4 86 1979-2071 14-101 (167)
107 1wa5_C Importin alpha RE-expor 98.2 0.0058 2E-07 86.1 44.8 341 457-808 261-672 (960)
108 1wa5_C Importin alpha RE-expor 98.2 0.005 1.7E-07 86.8 43.8 333 415-762 261-672 (960)
109 3jzy_A Intersectin 2; C2 domai 98.1 8.7E-07 3E-11 115.9 4.8 117 1977-2097 385-508 (510)
110 1tjx_A Similar to synaptotagmi 98.1 8.6E-07 3E-11 96.1 3.7 89 1978-2066 24-120 (159)
111 2x1g_F Cadmus; transport prote 98.1 0.0014 4.9E-08 92.7 37.4 587 63-762 16-724 (971)
112 2x19_B Importin-13; nuclear tr 98.1 0.011 3.9E-07 83.4 45.7 218 536-763 459-717 (963)
113 1cjy_A CPLA2, protein (cytosol 98.1 1.3E-06 4.3E-11 115.1 3.8 105 1977-2082 16-127 (749)
114 2qk2_A LP04448P; mini spindles 98.0 2.6E-05 8.9E-10 90.9 13.7 179 405-592 20-208 (242)
115 3tjz_B Coatomer subunit gamma; 98.0 4.8E-05 1.6E-09 92.0 15.8 268 1318-1621 70-338 (355)
116 1te4_A Conserved protein MTH18 98.0 8.9E-07 3.1E-11 92.5 0.0 120 484-632 12-131 (131)
117 3tjz_B Coatomer subunit gamma; 98.0 0.00021 7.3E-09 86.3 20.5 280 402-715 70-349 (355)
118 2qk2_A LP04448P; mini spindles 98.0 6.5E-05 2.2E-09 87.5 15.6 177 529-718 18-204 (242)
119 2x19_B Importin-13; nuclear tr 98.0 0.21 7E-06 70.5 54.9 224 8-258 23-269 (963)
120 3b2a_A TON_1937, putative unch 97.9 0.00012 4.2E-09 79.8 15.4 186 442-635 33-219 (265)
121 1te4_A Conserved protein MTH18 97.9 1.7E-06 5.8E-11 90.3 0.9 119 441-585 11-129 (131)
122 2db0_A 253AA long hypothetical 97.9 0.001 3.4E-08 69.2 20.7 212 525-760 31-246 (253)
123 3b2a_A TON_1937, putative unch 97.9 0.00079 2.7E-08 73.6 20.2 215 1357-1592 32-256 (265)
124 3bxj_A RAS GTPase-activating p 97.9 2.2E-06 7.7E-11 109.7 0.3 101 1976-2081 8-116 (483)
125 1dqv_A Synaptotagmin III; beta 97.8 1.5E-05 5E-10 96.0 6.9 105 1978-2082 19-131 (296)
126 2db0_A 253AA long hypothetical 97.8 0.0015 5.2E-08 68.0 19.7 213 440-676 30-246 (253)
127 2qk1_A Protein STU2; STU2P, XM 97.8 0.0001 3.6E-09 85.8 13.1 190 405-594 21-225 (249)
128 1ho8_A Vacuolar ATP synthase s 97.8 0.0034 1.1E-07 77.3 26.0 345 52-470 75-475 (480)
129 1djx_A PLC-D1, phosphoinositid 97.7 1.5E-05 5.2E-10 104.5 5.3 116 1976-2097 494-622 (624)
130 2x1g_F Cadmus; transport prote 97.7 0.0043 1.5E-07 87.8 31.0 492 159-719 23-615 (971)
131 2r83_A Synaptotagmin-1; C2A-C2 97.6 2.2E-05 7.6E-10 93.9 4.5 89 1978-2066 149-245 (284)
132 2qk1_A Protein STU2; STU2P, XM 97.6 0.00053 1.8E-08 79.8 15.7 205 362-569 20-234 (249)
133 1dqv_A Synaptotagmin III; beta 97.6 1.2E-05 3.9E-10 96.9 1.3 90 1978-2067 151-248 (296)
134 3ibv_A Exportin-T; karyopherin 97.6 0.74 2.5E-05 64.1 48.6 227 7-259 4-262 (980)
135 1ho8_A Vacuolar ATP synthase s 97.5 0.016 5.6E-07 71.3 27.2 339 358-718 77-475 (480)
136 4hat_C Exportin-1; heat repeat 97.3 0.84 2.9E-05 63.6 43.8 223 56-308 18-263 (1023)
137 2iw3_A Elongation factor 3A; a 97.3 0.018 6.3E-07 78.1 26.0 282 376-674 31-322 (986)
138 3pfq_A PKC-B, PKC-beta, protei 97.2 0.00013 4.5E-09 98.0 3.6 103 1978-2081 171-280 (674)
139 3m1i_C Exportin-1; heat repeat 97.2 0.22 7.4E-06 70.8 36.8 514 60-677 22-619 (1049)
140 3m1i_C Exportin-1; heat repeat 97.1 1.1 3.7E-05 63.6 42.3 153 608-763 454-621 (1049)
141 4hat_C Exportin-1; heat repeat 97.1 1.2 4.2E-05 62.0 41.5 156 607-765 453-623 (1023)
142 1lrv_A LRV, leucine-rich repea 97.0 0.00017 5.7E-09 82.8 1.1 186 407-715 57-242 (244)
143 1lrv_A LRV, leucine-rich repea 96.8 0.00029 1E-08 80.8 1.2 185 449-755 57-241 (244)
144 3dad_A FH1/FH2 domain-containi 96.5 0.053 1.8E-06 63.6 17.4 179 607-786 120-315 (339)
145 3dad_A FH1/FH2 domain-containi 96.1 0.25 8.6E-06 57.9 20.0 146 404-550 122-281 (339)
146 2zkm_X 1-phosphatidylinositol- 96.0 0.0038 1.3E-07 84.0 5.1 86 1977-2068 676-770 (799)
147 3ibv_A Exportin-T; karyopherin 95.8 2.1 7.1E-05 59.6 31.5 454 412-901 20-567 (980)
148 3qr0_A Phospholipase C-beta (P 95.7 0.0053 1.8E-07 82.0 4.5 87 1977-2069 648-743 (816)
149 3ohm_B 1-phosphatidylinositol- 95.6 0.0058 2E-07 82.0 4.5 85 1978-2068 724-816 (885)
150 2of3_A ZYG-9; multifunctional 94.9 0.55 1.9E-05 54.0 17.3 99 607-718 134-235 (266)
151 4ffb_C Protein STU2; tubulin f 94.6 0.33 1.1E-05 57.1 15.1 150 607-763 57-215 (278)
152 3l9t_A Putative uncharacterize 94.0 0.33 1.1E-05 54.0 12.2 142 486-643 73-216 (240)
153 3gjx_A Exportin-1; transport, 93.9 30 0.001 48.1 35.0 223 55-308 29-275 (1073)
154 2of3_A ZYG-9; multifunctional 93.9 1.1 3.7E-05 51.6 16.8 177 405-635 51-237 (266)
155 3oc3_A Helicase MOT1, MOT1; re 93.9 0.25 8.4E-06 60.8 11.7 237 607-889 176-425 (800)
156 3a6p_A Exportin-5; exportin-5, 93.7 30 0.001 49.4 35.1 130 67-214 26-162 (1204)
157 4ffb_C Protein STU2; tubulin f 93.2 0.56 1.9E-05 55.2 13.5 191 648-854 11-211 (278)
158 3oc3_A Helicase MOT1, MOT1; re 92.3 0.4 1.4E-05 59.0 10.1 189 1372-1593 242-432 (800)
159 2fv2_A RCD1 required for cell 91.1 2.3 7.8E-05 47.7 13.8 144 1292-1439 76-234 (268)
160 3l9t_A Putative uncharacterize 89.0 3.4 0.00012 46.1 13.0 136 529-680 74-211 (240)
161 1upk_A MO25 protein; transfera 87.3 13 0.00044 43.7 17.0 203 601-808 74-285 (341)
162 1lsh_A Lipovitellin (LV-1N, LV 86.3 14 0.00048 51.8 20.2 169 55-259 392-578 (1056)
163 2enj_A NPKC-theta, protein kin 85.6 0.23 7.8E-06 49.9 1.1 86 2000-2097 34-128 (138)
164 2fv2_A RCD1 required for cell 85.5 33 0.0011 38.6 18.2 149 114-267 75-233 (268)
165 3a6p_A Exportin-5; exportin-5, 84.9 1.6E+02 0.0054 41.9 43.2 232 6-267 8-288 (1204)
166 1lsh_A Lipovitellin (LV-1N, LV 84.7 50 0.0017 46.2 24.6 179 1230-1437 390-585 (1056)
167 3u0r_A Apoptosis inhibitor 5; 84.3 3.1 0.00011 51.0 10.3 124 658-805 39-162 (507)
168 1yrk_A NPKC-delta, protein kin 84.1 0.28 9.7E-06 48.6 1.0 61 2015-2081 48-113 (126)
169 3ebb_A Phospholipase A2-activa 83.5 8.9 0.00031 45.1 13.7 118 412-530 160-280 (304)
170 3ebb_A Phospholipase A2-activa 83.3 37 0.0013 39.8 18.9 172 1210-1383 122-301 (304)
171 3u0r_A Apoptosis inhibitor 5; 82.8 8.1 0.00028 47.4 13.0 127 11-163 28-154 (507)
172 1upk_A MO25 protein; transfera 80.9 94 0.0032 36.5 21.2 204 1268-1473 74-286 (341)
173 3c2g_A SYS-1 protein; beta-cat 78.1 28 0.00095 40.2 14.3 114 167-282 266-379 (619)
174 3eg5_B Protein diaphanous homo 76.9 28 0.00096 42.4 15.6 155 483-663 108-281 (383)
175 2f31_A Diaphanous protein homo 76.5 27 0.00091 39.4 14.3 143 497-665 67-217 (233)
176 3gjx_A Exportin-1; transport, 76.0 2.6E+02 0.0089 38.8 43.1 219 8-258 27-276 (1073)
177 3gs3_A Symplekin, LD45768P; he 75.1 73 0.0025 36.2 17.3 162 5-213 11-172 (257)
178 3o2t_A Symplekin; heat repeat, 73.6 91 0.0031 37.7 18.4 162 5-213 21-182 (386)
179 3c2g_A SYS-1 protein; beta-cat 71.2 20 0.0007 41.2 11.0 132 378-511 262-401 (619)
180 2bnx_A Diaphanous protein homo 66.1 64 0.0022 39.3 15.3 144 497-666 71-222 (386)
181 3eg5_B Protein diaphanous homo 61.5 2.2E+02 0.0075 34.5 18.8 138 399-537 108-275 (383)
182 1juq_A ADP-ribosylation factor 49.7 50 0.0017 35.1 9.0 107 10-124 13-128 (171)
183 2f31_A Diaphanous protein homo 47.6 2.1E+02 0.0071 31.9 14.4 128 579-709 73-218 (233)
184 3qml_C Protein SLS1, nucleotid 46.7 1.2E+02 0.0042 35.0 12.0 145 1363-1512 27-188 (315)
185 3g2s_A C-terminal fragment of 39.9 1.3E+02 0.0043 31.2 9.9 109 1316-1429 10-127 (149)
186 1mhq_A ADP-ribosylation factor 39.6 1.4E+02 0.0047 30.9 10.2 107 11-124 2-116 (148)
187 3ldz_A STAM-1, signal transduc 38.9 1E+02 0.0035 31.5 9.1 88 1336-1428 25-114 (140)
188 3s4w_B Protein FACD2, fanconi 38.5 6.6E+02 0.023 35.3 19.4 204 661-896 324-545 (1323)
189 1x5b_A Signal transducing adap 38.4 61 0.0021 34.1 7.5 107 10-124 15-125 (163)
190 1elk_A Target of MYB1; superhe 34.9 1.6E+02 0.0056 30.6 10.1 108 10-124 16-130 (157)
191 2bnx_A Diaphanous protein homo 33.8 4.8E+02 0.016 31.5 15.5 127 580-709 78-222 (386)
192 3ldz_A STAM-1, signal transduc 33.2 1.4E+02 0.0047 30.5 9.0 104 13-124 8-114 (140)
193 1juq_A ADP-ribosylation factor 32.8 1.5E+02 0.0052 31.4 9.5 88 1337-1429 34-129 (171)
194 1mhq_A ADP-ribosylation factor 32.6 1.7E+02 0.0057 30.2 9.5 74 1356-1429 36-117 (148)
195 3g2s_A C-terminal fragment of 32.1 1.8E+02 0.0061 30.0 9.6 108 10-124 11-126 (149)
196 1x5b_A Signal transducing adap 31.5 1.7E+02 0.0057 30.8 9.4 74 1356-1429 50-126 (163)
197 3gs3_A Symplekin, LD45768P; he 30.8 4.4E+02 0.015 29.8 13.4 90 1286-1386 29-118 (257)
198 3zyq_A Hepatocyte growth facto 29.4 1.4E+02 0.0049 33.1 9.1 108 1317-1429 8-119 (226)
199 3s4w_B Protein FACD2, fanconi 26.7 1.3E+03 0.043 32.6 19.1 212 531-749 312-538 (1323)
200 3zyq_A Hepatocyte growth facto 23.2 1.8E+02 0.0062 32.3 8.4 108 9-124 7-118 (226)
201 3l4c_A Dedicator of cytokinesi 21.5 71 0.0024 35.2 4.4 49 2016-2065 83-138 (220)
202 2g9g_A Pngase, peptide N-glyca 21.2 1.2E+02 0.004 33.4 6.0 72 2027-2099 116-220 (221)
No 1
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=4.6e-47 Score=502.51 Aligned_cols=712 Identities=15% Similarity=0.144 Sum_probs=551.1
Q ss_pred chhHHHHHHHHHHHHccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhc-CCHHHHHHHHHHHHhhhc
Q 000133 5 DGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRS-GSLAVKIQAATVLGSLCK 83 (2100)
Q Consensus 5 ~~~~~~v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~-~~~~v~~~aa~~L~~L~~ 83 (2100)
.+|.+||.+|++.+++.+.+.+.|++|.++|.+|+++..+++.++. .|++..|.+++++ .++++...|.++|..+|+
T Consensus 2 ~~~~~kv~~m~~i~~~~~~~~~~~~~a~~nl~vl~re~aga~~i~~--~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~ 79 (810)
T 3now_A 2 AKTSTKVKQMMDLTFDLATPIDKRRAAANNLVVLAKEQTGAELLYK--DHCIAKVASLTKVEKDQDIYVNMVHLVAALCE 79 (810)
T ss_dssp HHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHSSCHHHHHHHHH--TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CcccHHHHHHHHHHcccccCHHHHHHHHhhceeeeccccchHHHHh--CchHHHHHHHHhccCchhHHHHHHHHHHHHHh
Confidence 4799999999999999888888999999999999999889999875 5789999999999 789999999999999999
Q ss_pred cchhhHH-HHhcCChHHHHHhhcCCCHHHHHHHHHHHH----HHhccCCCCcccc-cchhccC------ChHHHHHHhhc
Q 000133 84 ENELRVK-VLLGGCIPPLLGLLKSSSAEGQIAAAKTIY----AVSQGGAKDYVGS-KIFSTEG------VVPVLWEQLKN 151 (2100)
Q Consensus 84 ~~~~~~~-i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~----~Ls~~~~~~~~~~-~~~~~~g------~vp~L~~lL~~ 151 (2100)
++..|.. ++..=++|.++.+|.+++.+...+++..+. .++.+..+.+.+. +.++... .+..|++++.+
T Consensus 80 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 159 (810)
T 3now_A 80 NSVERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITD 159 (810)
T ss_dssp TCHHHHHHHHHHSCHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHcCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhc
Confidence 9987764 556677999999999999888777765554 3444333333221 1222222 24557777777
Q ss_pred cCCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccC-----------CHHHHHHHHHHHHHHhhcCcchh
Q 000133 152 GLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLG-----------QSSTQAHVCFLLACMMEEDVSVC 220 (2100)
Q Consensus 152 ~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~-----------~~~v~~~a~~~L~~L~~~~~~~~ 220 (2100)
...+........-...+|+-..+-..-...+..+|+..++.....- .+++|.++.-+|.++........
T Consensus 160 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~ 239 (810)
T 3now_A 160 RTISGAARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDE 239 (810)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHH
T ss_pred cccChhhHHHHHHHHHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccch
Confidence 6666543333333445555333211111244568899999987651 46799999999998875443111
Q ss_pred -hHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHH-hCCChHHHHHhhcCCCcchhhhhhhHHHHHH
Q 000133 221 -SRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIA-GSNGIPAMINATIAPSKEFMQGEYAQALQEN 298 (2100)
Q Consensus 221 -~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~-~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~ 298 (2100)
......- +..+++-.-...+.+-...|++++.++..+.++....++ ..|+++.++.++.+++ ..+|++
T Consensus 240 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~---------~~~q~~ 309 (810)
T 3now_A 240 AKARFTDQ-IDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDD---------ELQQRV 309 (810)
T ss_dssp HHHHHHHH-HHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSC---------HHHHHH
T ss_pred hHHHHHHH-HHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCC---------HHHHHH
Confidence 1122222 333333222335567889999999999999988877776 7899999999998865 678899
Q ss_pred HHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHH
Q 000133 299 AMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQER 378 (2100)
Q Consensus 299 a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~ 378 (2100)
|++++.+++.+ +.. +..+. ..++ +.|+.++++++ ..+|.+
T Consensus 310 A~~al~~aa~~-~~~-------------R~~I~------------------------~~gv-~~L~~Ll~s~~-~~vr~~ 349 (810)
T 3now_A 310 ACECLIAASSK-KDK-------------AKALC------------------------EQGV-DILKRLYHSKN-DGIRVR 349 (810)
T ss_dssp HHHHHHHHTTS-HHH-------------HHTTH------------------------HHHH-HHHHHHTTCSC-HHHHHH
T ss_pred HHHHHHHHcCC-cHH-------------HHHHH------------------------HcCc-HHHHHHHcCCC-HHHHHH
Confidence 99999998764 111 11111 1234 77888887655 457999
Q ss_pred HHHHHHHHhCCC--ccchhhhcccc----HHHHHHhhcCC--CHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHh
Q 000133 379 TIEALASLYGNP--LLSIKLENSEA----KRLLVGLITMA--TNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISL 450 (2100)
Q Consensus 379 aa~aL~~L~~~~--~~~~~l~~~g~----i~~Lv~lL~~~--~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~l 450 (2100)
|+.+|++++... +......+.|+ ++.++.+|.++ +++++++|+++|.+|+.+.....+.+.+.|++|.|+.+
T Consensus 350 Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~L 429 (810)
T 3now_A 350 ALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDL 429 (810)
T ss_dssp HHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHH
Confidence 999999996432 22322333344 55677888877 88999999999999999854444444467899999999
Q ss_pred hCCCCHHHHHHHHHHHHHhccCCcc-----------------------------c---HHHHHhcCChHHHHHhccCCCH
Q 000133 451 LGLSSEQQQECSVALLCLLSNENDD-----------------------------S---KWAITAAGGIPPLVQILESGSA 498 (2100)
Q Consensus 451 L~s~~~~v~~~A~~aL~nLs~~~~~-----------------------------~---~~~i~~~g~i~~Lv~lL~~~~~ 498 (2100)
++++++.+++.|+++|.||+.+.+. . .+.++++|++|.|+++|.++++
T Consensus 430 L~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~ 509 (810)
T 3now_A 430 ARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESH 509 (810)
T ss_dssp HHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCH
T ss_pred hCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCH
Confidence 9999999999999999999975421 1 2788999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHH
Q 000133 499 KAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKV 578 (2100)
Q Consensus 499 ~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~ 578 (2100)
.+|+.|+|+|.||+. ++++|..+.++|++|+|+.+|+++++..++.|+++|.+|+.+.++ +..
T Consensus 510 ~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p---------------~~~- 572 (810)
T 3now_A 510 NSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINP---------------EVS- 572 (810)
T ss_dssp HHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH---------------HHH-
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCh---------------hhh-
Confidence 999999999999997 478999999999999999999999999999999999999875443 100
Q ss_pred HHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhc
Q 000133 579 YVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSST-KEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLD 657 (2100)
Q Consensus 579 ~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~-~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~ 657 (2100)
+. .....+++|.|+++|.++ +...+..|+++|.||+..+++.+..+++.|++|.|+.++.
T Consensus 573 ------------------~~-~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~ 633 (810)
T 3now_A 573 ------------------FS-GQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLM 633 (810)
T ss_dssp ------------------TT-THHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH
T ss_pred ------------------hc-chhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHc
Confidence 00 000124699999999866 4556679999999999998889999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcCCchhHHHHHHh-CCChHHHHHHhCCCCHHHHHHHHHHHHHHhc-CcHHHHHHHH-cCcHH
Q 000133 658 VGSECILVEASRCLAAIFLSVRENREVAAVA-RDALSPLVVLAGSPVLEVAEQATCALANLIL-DSEVSEKAIA-EEIIL 734 (2100)
Q Consensus 658 ~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~-~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~-~~~~~~~~v~-~~~v~ 734 (2100)
++++.+++.|+++|+||+.+. +..+. +.+ .|.++.|+.++.+++.++|+.|+|||+||+. +++....+++ .+.++
T Consensus 634 s~~~~Vq~~A~~~L~NLa~~~-~~~~~-~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~ 711 (810)
T 3now_A 634 EDHLYLTRAAAQCLCNLVMSE-DVIKM-FEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLD 711 (810)
T ss_dssp SCCTTHHHHHHHHHHHHTTSH-HHHHH-HHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCh-HHHHH-HHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHH
Confidence 999999999999999997754 33333 554 7899999999999999999999999999997 5777888888 89999
Q ss_pred HHHHHHccCChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhc---ccccchHhHHHHHHHHHHcCCC
Q 000133 735 PATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESA---SGSVATSEALDALAILSRSGGA 810 (2100)
Q Consensus 735 ~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~---~~~v~~~~al~~L~~L~~~~~~ 810 (2100)
+|+.++++++.+++..|+|+|.+++.+. ......+...|++++|+++++.+ +.++. +.|+++|.++++.+.-
T Consensus 712 ~Lv~LL~s~d~~vq~~A~~aL~NL~~~s---~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~-e~Al~aL~~ll~~g~~ 786 (810)
T 3now_A 712 ILHTLIANPSPAVQHRGIVIILNMINAG---EEIAKKLFETDIMELLSGLGQLPDDTRAKAR-EVATQCLAAAERYRII 786 (810)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHTTC---HHHHHHHHTSTHHHHHTTSCCCTTSTTHHHH-HHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHCCCHHHHHHHHhCcccCcHHHH-HHHHHHHHHHHhCCCc
Confidence 9999999999999999999999999743 24566677899999999999876 36666 9999999999876653
No 2
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=1.1e-36 Score=403.36 Aligned_cols=661 Identities=13% Similarity=0.096 Sum_probs=492.2
Q ss_pred HHHHHHHHHccCCChhHHHHHHHHHHHHhhcch-hhhhhhhccCCchHHHHHHHhcCCHHHHHHHHHHHHh----hhccc
Q 000133 11 VAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRE-NAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGS----LCKEN 85 (2100)
Q Consensus 11 v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~-~~~~~i~~~~g~v~~L~~lL~~~~~~v~~~aa~~L~~----L~~~~ 85 (2100)
|..+.+.++ .+++++-.-.|++.|..+++... ....++ +.=++|.++.++.+++++.-..+...+.. |+..+
T Consensus 51 ~~~~~~l~~-~~~~~~~~~~~~r~~~~~~~~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (810)
T 3now_A 51 IAKVASLTK-VEKDQDIYVNMVHLVAALCENSVERTKGVL--TELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLK 127 (810)
T ss_dssp HHHHHHHHH-HCCCHHHHHHHHHHHHHHHTTCHHHHHHHH--HHSCHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHh-ccCchhHHHHHHHHHHHHHhccHHHHHHHH--HHcCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccc
Confidence 444444443 34566677899999999999874 233333 23468999999999888765555554443 33111
Q ss_pred h----hhH-HHHh------cCChHHHHHhhcCCC--HHHHHHHHHHHH-HHhccCCCCcccccchhccCChHHHHHHhhc
Q 000133 86 E----LRV-KVLL------GGCIPPLLGLLKSSS--AEGQIAAAKTIY-AVSQGGAKDYVGSKIFSTEGVVPVLWEQLKN 151 (2100)
Q Consensus 86 ~----~~~-~i~~------~g~i~~Lv~lL~s~~--~~~~~~A~~aL~-~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~ 151 (2100)
. .+. .++. ...+..|+.++.+.. ...|.++...|. |+-.. +...-.-++..+++..+++.-..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~l~v~~~ 204 (810)
T 3now_A 128 NKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIELITRNVHYT---ALEWAERLVEIRGLCRLLDVCSE 204 (810)
T ss_dssp SSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTCT---TTTHHHHHHHTTHHHHHHHHHTC
T ss_pred cccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHHHHHHhCCcc---ccccccchhhHhhHHHHHHHHhc
Confidence 1 111 1211 134556667776544 556777776655 33321 11111115667778888877655
Q ss_pred cCCC--------cchHHHHHHHHHHHhccC--ChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhh
Q 000133 152 GLKS--------GNVVDNLLTGALRNLSTS--TEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCS 221 (2100)
Q Consensus 152 ~~~~--------~~~v~~~a~~aL~nL~~~--~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~ 221 (2100)
.... .+..+..+.-+|..+-.+ .+..+ .....-+-..+...+..++.+-...|++++.++.....+...
T Consensus 205 ~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~ 283 (810)
T 3now_A 205 LEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAK-ARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGN 283 (810)
T ss_dssp CSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHH-HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHH
T ss_pred CccccccccCCCChhHHHHHHHHHHHHHHHhccchhH-HHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHH
Confidence 3221 233777777777766422 22222 222222233445566678888889999999999988887777
Q ss_pred HHh-hhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHH
Q 000133 222 RVL-AADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAM 300 (2100)
Q Consensus 222 ~i~-~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~ 300 (2100)
.++ ..|+++.|+.++.+.+ ..++..|+++|.+++. ++++|..+.+.|+ |.|..++.+.+ ..++.+|.
T Consensus 284 ~~~~~~G~v~~li~Ll~s~~-~~~q~~A~~al~~aa~-~~~~R~~I~~~gv-~~L~~Ll~s~~---------~~vr~~Al 351 (810)
T 3now_A 284 QVVAREGILQMILAMATTDD-ELQQRVACECLIAASS-KKDKAKALCEQGV-DILKRLYHSKN---------DGIRVRAL 351 (810)
T ss_dssp HHHHTTTHHHHHHHHHHSSC-HHHHHHHHHHHHHHTT-SHHHHHTTHHHHH-HHHHHHTTCSC---------HHHHHHHH
T ss_pred HHHhccchHHHHHHHhCCCC-HHHHHHHHHHHHHHcC-CcHHHHHHHHcCc-HHHHHHHcCCC---------HHHHHHHH
Confidence 665 8899999999999865 6899999999999887 5889999999874 99999997543 56788999
Q ss_pred HHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCC-ChHHHHHH
Q 000133 301 CALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRL-PFLVQERT 379 (2100)
Q Consensus 301 ~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~-~~~vq~~a 379 (2100)
.+|+++..... + +...+..+ .|.+ ..+.+.|+++|.++. +..+++.|
T Consensus 352 ~~L~kl~s~~~-----------~-d~~~~~~~-~g~i-------------------~~Lv~~l~~lL~~~~~d~~v~~~A 399 (810)
T 3now_A 352 VGLCKLGSYGG-----------Q-DAAIRPFG-DGAA-------------------LKLAEACRRFLIKPGKDKDIRRWA 399 (810)
T ss_dssp HHHHHHHTTTT-----------T-TTSCCSST-TTHH-------------------HHHHHHHHHHHHCSSCCSSHHHHH
T ss_pred HHHHHhccccc-----------c-Cccccchh-hccH-------------------HHHHHHHHHHhcCCCCCHHHHHHH
Confidence 99999864210 0 00001110 1112 134566778877762 44579999
Q ss_pred HHHHHHHhCCCccchhhh-ccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCcc-------------------------
Q 000133 380 IEALASLYGNPLLSIKLE-NSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGS------------------------- 433 (2100)
Q Consensus 380 a~aL~~L~~~~~~~~~l~-~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~------------------------- 433 (2100)
+++|++|...++.+..+. +.|+++.|+.+++++++.++..|+++|.||+.+.+.
T Consensus 400 veaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld 479 (810)
T 3now_A 400 ADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELD 479 (810)
T ss_dssp HHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHH
T ss_pred HHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccc
Confidence 999999999999888777 579999999999999999999999999999986421
Q ss_pred ----ch---HHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHH
Q 000133 434 ----LW---RALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSAS 506 (2100)
Q Consensus 434 ----~~---~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~ 506 (2100)
.+ +.++++|++|.|+.+++++++.+|+.|+|+|+||+. +++++..++++|++|+|+.+|.++++..|+.|+|
T Consensus 480 ~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~ 558 (810)
T 3now_A 480 DVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQ 558 (810)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHH
Confidence 12 678899999999999999999999999999999994 7889999999999999999999999999999999
Q ss_pred HHHHHhcCChhhHHHH---HhCCcHHHHHHHhhcC-ChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHH
Q 000133 507 ILRNLCNHSEDIRACV---ESADAVPALLWLLKNG-SANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLD 582 (2100)
Q Consensus 507 aL~~L~~~~~~~~~~i---~~~g~i~~Lv~lL~~~-~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~ 582 (2100)
+|.||+...+. ...+ ...|++|+|+++|.++ +...+..|+++|.||+..++.
T Consensus 559 AL~nL~~~~~p-~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~----------------------- 614 (810)
T 3now_A 559 ALARIGITINP-EVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNES----------------------- 614 (810)
T ss_dssp HHHHHHHHSCH-HHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH-----------------------
T ss_pred HHHHHhcCCCh-hhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHH-----------------------
Confidence 99999964222 1111 1246999999999865 334567899999999874321
Q ss_pred HHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh-cCchHHHHHhhcCCCH
Q 000133 583 ALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIA-VKTLWSVMKLLDVGSE 661 (2100)
Q Consensus 583 aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~-~g~v~~Lv~lL~~~~~ 661 (2100)
.+..+.+.||++.|+.+|.++++.+|+.|+++|+||+.+ ++.+..+.. .|+++.|+.++.+.+.
T Consensus 615 --------------~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~-~~~~~~~v~~~g~l~~Lv~LL~s~d~ 679 (810)
T 3now_A 615 --------------VRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS-EDVIKMFEGNNDRVKFLALLCEDEDE 679 (810)
T ss_dssp --------------HHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS-HHHHHHHHSSSSHHHHHHHGGGCSSH
T ss_pred --------------HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-hHHHHHHHhccCcHHHHHHHhcCCCH
Confidence 233455678999999999999999999999999999997 567777775 6899999999999999
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHh-CCChHHHHHHhCCCCHHHHHHHHHHHHHHhc-CcHHHHHHHHcCcHHHHHHH
Q 000133 662 CILVEASRCLAAIFLSVRENREVAAVA-RDALSPLVVLAGSPVLEVAEQATCALANLIL-DSEVSEKAIAEEIILPATRV 739 (2100)
Q Consensus 662 ~v~~~aa~aL~~L~~~~~~~~~~~~~~-~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~-~~~~~~~~v~~~~v~~L~~l 739 (2100)
.+++.|+++|++++.+.+... ..+++ .|++++|+.++.+++.++|+.|+|+|+||+. +++....+++.|++++|..+
T Consensus 680 ~vq~~Aa~ALanLt~~s~~~~-~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~L 758 (810)
T 3now_A 680 ETATACAGALAIITSVSVKCC-EKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGL 758 (810)
T ss_dssp HHHHHHHHHHHHHHHHCHHHH-HHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTS
T ss_pred HHHHHHHHHHHHHhCCCHHHH-HHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 999999999999987544333 34677 8999999999999999999999999999985 46677888899999999999
Q ss_pred HccC---ChhHHHHHHHHHHHHHhcCc
Q 000133 740 LCEG---TISGKTLAAAAIARLLHSRK 763 (2100)
Q Consensus 740 l~~~---~~~~~~~Aa~aL~~l~~~~~ 763 (2100)
++.. ++++...|..+|.+++...-
T Consensus 759 L~~~d~~~~~i~e~Al~aL~~ll~~g~ 785 (810)
T 3now_A 759 GQLPDDTRAKAREVATQCLAAAERYRI 785 (810)
T ss_dssp CCCTTSTTHHHHHHHHHHHHHHHHHHT
T ss_pred HhCcccCcHHHHHHHHHHHHHHHhCCC
Confidence 9766 46689999999999986543
No 3
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=412.38 Aligned_cols=531 Identities=20% Similarity=0.183 Sum_probs=445.6
Q ss_pred CCchHHHHHHHhcCCHHHHHHHHHHHHhhhccchhhHHHHhc-CChHHHHHhhcCC-CHHHHHHHHHHHHHHhccCCCCc
Q 000133 53 SQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLG-GCIPPLLGLLKSS-SAEGQIAAAKTIYAVSQGGAKDY 130 (2100)
Q Consensus 53 ~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~-g~i~~Lv~lL~s~-~~~~~~~A~~aL~~Ls~~~~~~~ 130 (2100)
.|+++.|+.+|+++++.+|..|+.+|++++.+++.+..+... |+++.|+++|.++ +.+++..|+.+|.+++. +.
T Consensus 13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~----~~ 88 (644)
T 2z6h_A 13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH----HR 88 (644)
T ss_dssp TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT----SH
T ss_pred hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc----Ch
Confidence 589999999999999999999999999999888877777655 8899999999875 88999999999999998 33
Q ss_pred ccccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHH
Q 000133 131 VGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLA 210 (2100)
Q Consensus 131 ~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~ 210 (2100)
.++..+.+.|++|.|+++|.+. ++.++..++++|+|++...+..+..+++.|+++.|+++|+++++.++..++.+|.
T Consensus 89 ~~~~~i~~~g~i~~Lv~lL~~~---~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~ 165 (644)
T 2z6h_A 89 EGLLAIFKSGGIPALVKMLGSP---VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 165 (644)
T ss_dssp HHHHHHHTTTHHHHHHHHTTCS---SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHhCC---CHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHH
Confidence 4677788999999999999873 4668999999999999877777787889999999999999999999999999999
Q ss_pred HHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhh
Q 000133 211 CMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGE 290 (2100)
Q Consensus 211 ~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~ 290 (2100)
+++..++..+..+.+.|+++.|++++.++.+...+..++.+|++|+. +++++..+++.|+++.|+.++..++
T Consensus 166 ~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~~~------- 237 (644)
T 2z6h_A 166 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPS------- 237 (644)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTCSC-------
T ss_pred HHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhcCC-------
Confidence 99987777888999999999999999988777889999999999997 7889999999999999999997653
Q ss_pred hhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCC
Q 000133 291 YAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPR 370 (2100)
Q Consensus 291 ~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~ 370 (2100)
..+++.++++|.|++.....
T Consensus 238 --~~~~~~a~~~L~nL~~~~~~---------------------------------------------------------- 257 (644)
T 2z6h_A 238 --QRLVQNCLWTLRNLSDAATK---------------------------------------------------------- 257 (644)
T ss_dssp --HHHHHHHHHHHHHHGGGCTT----------------------------------------------------------
T ss_pred --HHHHHHHHHHHHHHhhcchh----------------------------------------------------------
Confidence 67889999999998853110
Q ss_pred CChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHh
Q 000133 371 LPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISL 450 (2100)
Q Consensus 371 ~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~l 450 (2100)
.....++++.|+.++.+.+++++..|+++|.+|+.+++.+++.+.+.|+++.|+.+
T Consensus 258 ------------------------~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~l 313 (644)
T 2z6h_A 258 ------------------------QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT 313 (644)
T ss_dssp ------------------------CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred ------------------------hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHH
Confidence 00012567888999999999999999999999999887888999999999999999
Q ss_pred hCCC--CHHHHHHHHHHHHHhccCCcc---cHHHHHhcCChHHHHHhccCCC-HHHHHHHHHHHHHHhcCChhhHHHHHh
Q 000133 451 LGLS--SEQQQECSVALLCLLSNENDD---SKWAITAAGGIPPLVQILESGS-AKAKEDSASILRNLCNHSEDIRACVES 524 (2100)
Q Consensus 451 L~s~--~~~v~~~A~~aL~nLs~~~~~---~~~~i~~~g~i~~Lv~lL~~~~-~~vre~A~~aL~~L~~~~~~~~~~i~~ 524 (2100)
+.+. .+.++..|+++|+||+..+++ .+..+.+.|+++.|+++|.+++ +.+++.|+|+|+||+.. +.++..+.+
T Consensus 314 L~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~-~~~~~~i~~ 392 (644)
T 2z6h_A 314 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLRE 392 (644)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHH
T ss_pred HHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccC-HHHHHHHHH
Confidence 9863 379999999999999864442 3556888999999999999875 79999999999999985 677888999
Q ss_pred CCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhcc
Q 000133 525 ADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAAN 604 (2100)
Q Consensus 525 ~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~ 604 (2100)
.|+++.|++++.++++.+++.|++++.+-... .
T Consensus 393 ~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~-----------------------------------------------~ 425 (644)
T 2z6h_A 393 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFV-----------------------------------------------E 425 (644)
T ss_dssp TTHHHHHHHHHHHHHHHHTTC----------C-----------------------------------------------C
T ss_pred cCCHHHHHHHHhccchhhhhHhhhccccchhc-----------------------------------------------c
Confidence 99999999999998888888888877651000 0
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 000133 605 DAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREV 684 (2100)
Q Consensus 605 ~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~ 684 (2100)
+ ..+++++..++.+|++|+.+ +..+..+...|++++|+.++.+.++.+++.++.+|.+++.. + ..+.
T Consensus 426 ~----------~~~~~v~~~a~~aL~~La~~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~-~-~~~~ 492 (644)
T 2z6h_A 426 G----------VRMEEIVEGCTGALHILARD-VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-K-EAAE 492 (644)
T ss_dssp S----------SCHHHHHHHHHHHHHHHTTS-HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-H-HHHH
T ss_pred c----------ccHHHHHHHHHHHHHHHhcC-HHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-H-HHHH
Confidence 0 02355778899999999987 57888899999999999999999999999999999999754 3 4555
Q ss_pred HHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcH-HHHHHHHcCcHHHHHHHHccCChh
Q 000133 685 AAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSE-VSEKAIAEEIILPATRVLCEGTIS 746 (2100)
Q Consensus 685 ~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~-~~~~~v~~~~v~~L~~ll~~~~~~ 746 (2100)
.+.+.|+++.|..++.++++++|+.|+++|++|..+.+ .....+ .++.+..+++++...
T Consensus 493 ~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~---~~~il~~~~~~~~~~ 552 (644)
T 2z6h_A 493 AIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRL---SVELTSSLFRTEPMA 552 (644)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHH---HHHHHHHHSCCSCGG
T ss_pred HHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhccc---chHHHHHHHhCCCcc
Confidence 68899999999999999999999999999999996643 222222 366667777766544
No 4
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=6.2e-37 Score=407.10 Aligned_cols=505 Identities=20% Similarity=0.190 Sum_probs=425.5
Q ss_pred CCchHHHHHHHhcCCHHHHHHHHHHHHhhhccchhhHHHHhc-CChHHHHHhhcCC-CHHHHHHHHHHHHHHhccCCCCc
Q 000133 53 SQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLG-GCIPPLLGLLKSS-SAEGQIAAAKTIYAVSQGGAKDY 130 (2100)
Q Consensus 53 ~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~-g~i~~Lv~lL~s~-~~~~~~~A~~aL~~Ls~~~~~~~ 130 (2100)
.|++|.|+.+|+++++.+|..|+.+|.+++.+++.+..+... |++++|+++|.++ +++.+..|+.+|++++. +.
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~----~~ 91 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH----HR 91 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT----SH
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHc----Cc
Confidence 588999999999999999999999999999888887777755 8999999999765 88999999999999997 33
Q ss_pred ccccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHH
Q 000133 131 VGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLA 210 (2100)
Q Consensus 131 ~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~ 210 (2100)
.++..+.+.|++|.|+++|.+. ++.++..++++|++++..++..+..+++.|++|.|++++++++++++..++.+|.
T Consensus 92 ~~~~~i~~~g~i~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~ 168 (529)
T 1jdh_A 92 EGLLAIFKSGGIPALVKMLGSP---VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 168 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHcCC---CHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4677788999999999999873 4668889999999999887777888889999999999999999999999999999
Q ss_pred HHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhh
Q 000133 211 CMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGE 290 (2100)
Q Consensus 211 ~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~ 290 (2100)
+++..++..+..+.+.|+++.|+++++++.+...+..++.+|++|+. +++++..+.+.|+++.|+.++.+++
T Consensus 169 ~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll~~~~------- 240 (529)
T 1jdh_A 169 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPS------- 240 (529)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSC-------
T ss_pred HHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhCCC-------
Confidence 99988787888999999999999999987777788889999999997 7789999999999999999997653
Q ss_pred hhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCC
Q 000133 291 YAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPR 370 (2100)
Q Consensus 291 ~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~ 370 (2100)
..++++++++|.|++.+.+.
T Consensus 241 --~~~~~~a~~~L~~l~~~~~~---------------------------------------------------------- 260 (529)
T 1jdh_A 241 --QRLVQNCLWTLRNLSDAATK---------------------------------------------------------- 260 (529)
T ss_dssp --HHHHHHHHHHHHHHHTTCTT----------------------------------------------------------
T ss_pred --hHHHHHHHHHHHHHhcCChh----------------------------------------------------------
Confidence 67888999999998863110
Q ss_pred CChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHh
Q 000133 371 LPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISL 450 (2100)
Q Consensus 371 ~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~l 450 (2100)
.....++++.|+.++.+++++++..|+++|.+|+.+++..+..+.+.|+++.|+++
T Consensus 261 ------------------------~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~l 316 (529)
T 1jdh_A 261 ------------------------QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT 316 (529)
T ss_dssp ------------------------CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHH
T ss_pred ------------------------hHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHH
Confidence 00012567888999999999999999999999999887888999999999999999
Q ss_pred hCC--CCHHHHHHHHHHHHHhccCCcc---cHHHHHhcCChHHHHHhccCCC-HHHHHHHHHHHHHHhcCChhhHHHHHh
Q 000133 451 LGL--SSEQQQECSVALLCLLSNENDD---SKWAITAAGGIPPLVQILESGS-AKAKEDSASILRNLCNHSEDIRACVES 524 (2100)
Q Consensus 451 L~s--~~~~v~~~A~~aL~nLs~~~~~---~~~~i~~~g~i~~Lv~lL~~~~-~~vre~A~~aL~~L~~~~~~~~~~i~~ 524 (2100)
+.+ .++.+++.|+++|+||+.++++ .+..+.+.|++|.|+++|.+++ +.++..++|+|+|++.. +..+..+.+
T Consensus 317 l~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~~~ 395 (529)
T 1jdh_A 317 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLRE 395 (529)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHH
T ss_pred HHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC-hhhhHHHHH
Confidence 975 3479999999999999875444 3678899999999999999886 69999999999999985 677888999
Q ss_pred CCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhcc
Q 000133 525 ADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAAN 604 (2100)
Q Consensus 525 ~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~ 604 (2100)
.|++|.|+++++++++.+++.|+|++.|.+..... ...+++..+..+|+.++.. ++ .+..+.+.
T Consensus 396 ~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~------------~~~~i~~~~~~al~~L~~~---~~-~~~~l~~~ 459 (529)
T 1jdh_A 396 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV------------RMEEIVEGCTGALHILARD---VH-NRIVIRGL 459 (529)
T ss_dssp TTHHHHHHHHHHHHHHHHC-----------CBTTB------------CHHHHHHHHHHHHHHHTTS---HH-HHHHHHHT
T ss_pred cCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccc------------cHHHHHHHHHHHHHHHhcC---ch-HHHHHhcc
Confidence 99999999999998999999999999985432211 1123445566777766542 33 34566778
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000133 605 DAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAI 674 (2100)
Q Consensus 605 ~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L 674 (2100)
++++.|+.++.++++.+++.|+++|++++.+ ++.+..+.+.|+++.|.+++.+++++++..|+.+|.+|
T Consensus 460 ~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~-~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 460 NTIPLFVQLLYSPIENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp TCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHcCCchHHHHHHHHHHHHHhcC-HHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999975 77888899999999999999999999999999999887
No 5
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=1.2e-36 Score=417.68 Aligned_cols=563 Identities=20% Similarity=0.179 Sum_probs=447.3
Q ss_pred HHHHHHHHHccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhcCCHHHHHHHHHHHHhhhccchhhHH
Q 000133 11 VAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVK 90 (2100)
Q Consensus 11 v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~~~~ 90 (2100)
+..+++.|..+ ++..+..++. +....+ +..+. .|++|.|+.+|.++++.+|..|+.+|++++.+++.+..
T Consensus 117 i~~lv~~L~~~--~~~~r~~a~~-~l~~~~-----~~~i~--~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~ 186 (780)
T 2z6g_A 117 HPTNVQRLAEP--SQMLKHAVVN-LINYQD-----DAELA--TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHA 186 (780)
T ss_dssp ---------CC--SCHHHHHHHH-HHHHHH-----HHHHH--HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHhcCc--cHHHHHHHHH-HHHhhh-----HHHHH--hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHH
Confidence 56677776543 2333333333 333221 11222 48999999999999999999999999999988877777
Q ss_pred HHhc-CChHHHHHhhcCC-CHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHHHHHHHHHH
Q 000133 91 VLLG-GCIPPLLGLLKSS-SAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALR 168 (2100)
Q Consensus 91 i~~~-g~i~~Lv~lL~s~-~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~ 168 (2100)
+... |+++.|+.+|+++ +.+++..|+.+|++++. +..++..+.+.|++|.|+++|++. ++.++..++++|.
T Consensus 187 i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~----~~~~~~~i~~~g~I~~Lv~lL~~~---~~~v~~~A~~aL~ 259 (780)
T 2z6g_A 187 IMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSH----HREGLLAIFKSGGIPALVNMLGSP---VDSVLFHAITTLH 259 (780)
T ss_dssp HTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT----SHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHH
T ss_pred HHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhC----CchhHHHHHHcCCHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence 7754 8999999999865 89999999999999998 334466788899999999999874 4668899999999
Q ss_pred HhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHH
Q 000133 169 NLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEA 248 (2100)
Q Consensus 169 nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~A 248 (2100)
|++...+..+..+++.|+++.|+++|++++..++..++.+|..++..++..+..+.+.|+++.|+++++.+++...+..+
T Consensus 260 nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a 339 (780)
T 2z6g_A 260 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTT 339 (780)
T ss_dssp HHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHH
Confidence 99988778888888999999999999999999999999999999987777888999999999999999988777788899
Q ss_pred HHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChh
Q 000133 249 AGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPA 328 (2100)
Q Consensus 249 a~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~ 328 (2100)
+.+|++|+. +++++..+++.|+++.|+.++.+.+ ..+++.++++|.|++.....
T Consensus 340 ~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~lL~~~~---------~~~~~~a~~~L~~L~~~~~~---------------- 393 (780)
T 2z6g_A 340 SRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPS---------QRLVQNCLWTLRNLSDAATK---------------- 393 (780)
T ss_dssp HHHHHHHHT-STTHHHHHHHTTHHHHHGGGTTCSC---------HHHHHHHHHHHHHHHTTCTT----------------
T ss_pred HHHHHHhhc-ChHHHHHHHHhchHHHHHHHHcCCc---------hHHHHHHHHHHHHHhccchh----------------
Confidence 999999997 6788999999999999999997653 56788889999988853110
Q ss_pred hhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHh
Q 000133 329 QVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGL 408 (2100)
Q Consensus 329 ~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~l 408 (2100)
.....++++.|+.+
T Consensus 394 ------------------------------------------------------------------~~~~~~~i~~Lv~l 407 (780)
T 2z6g_A 394 ------------------------------------------------------------------QEGMEGLLGTLVQL 407 (780)
T ss_dssp ------------------------------------------------------------------CSCCHHHHHHHHHH
T ss_pred ------------------------------------------------------------------hhhhhhHHHHHHHH
Confidence 00012467888889
Q ss_pred hcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCC--CHHHHHHHHHHHHHhccCCcc---cHHHHHhc
Q 000133 409 ITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLS--SEQQQECSVALLCLLSNENDD---SKWAITAA 483 (2100)
Q Consensus 409 L~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~--~~~v~~~A~~aL~nLs~~~~~---~~~~i~~~ 483 (2100)
+.+.++.++..|+++|.+|+.+++..+..+.+.|+++.|+.++.+. .+.++..|+++|+||+..+++ .+..+...
T Consensus 408 L~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~ 487 (780)
T 2z6g_A 408 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLH 487 (780)
T ss_dssp TTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHc
Confidence 9999999999999999999998888888999999999999999863 348999999999999865544 25688899
Q ss_pred CChHHHHHhccCCC-HHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcH
Q 000133 484 GGIPPLVQILESGS-AKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATI 562 (2100)
Q Consensus 484 g~i~~Lv~lL~~~~-~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i 562 (2100)
|+++.|+++|.+++ +.+++.|+|+|+||+.. +..+..+.+.|+++.|+++|+++++.+++.+++++.|....
T Consensus 488 ~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~------ 560 (780)
T 2z6g_A 488 YGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFV------ 560 (780)
T ss_dssp TCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS-HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCS------
T ss_pred CCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhh------
Confidence 99999999999876 59999999999999984 77788899999999999999988888888777766551000
Q ss_pred HHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 000133 563 SQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRES 642 (2100)
Q Consensus 563 ~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~ 642 (2100)
. ....+++++.++.+|++|+.+ ++++..
T Consensus 561 ----------------------------------------~-----------~~~~~~v~~~a~~aL~~La~~-~~~~~~ 588 (780)
T 2z6g_A 561 ----------------------------------------E-----------GVRMEEIVEACTGALHILARD-IHNRIV 588 (780)
T ss_dssp ----------------------------------------T-----------TCCHHHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred ----------------------------------------c-----------ccChHHHHHHHHHHHHHHhcC-hhhHHH
Confidence 0 001245778899999999975 678888
Q ss_pred HHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcH
Q 000133 643 SIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSE 722 (2100)
Q Consensus 643 ~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~ 722 (2100)
+...|++|+|+.++.++++.++..++.+|.+++.. ...+..+.+.|+++.|++++.++++++|+.|+++|.+|..+.+
T Consensus 589 l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~--~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 589 IRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 88999999999999999999999999999999743 3456668999999999999999999999999999999997654
Q ss_pred H-HHHHHHcCcHHHHHHHHccCChh
Q 000133 723 V-SEKAIAEEIILPATRVLCEGTIS 746 (2100)
Q Consensus 723 ~-~~~~v~~~~v~~L~~ll~~~~~~ 746 (2100)
. .... -.++.+.+++++++..
T Consensus 667 ~~~~~~---l~~~ll~~l~~~~~~~ 688 (780)
T 2z6g_A 667 QDYKKR---LSVELTSSLFRTEPMT 688 (780)
T ss_dssp TTHHHH---HHHHHHHHC-------
T ss_pred Hhhhcc---ccHHHHHHHHhCCCcc
Confidence 2 1111 1555666666666543
No 6
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=7.2e-36 Score=396.86 Aligned_cols=508 Identities=19% Similarity=0.179 Sum_probs=415.5
Q ss_pred HhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchh-ccCChHHHHHHhhccCCCcchHHHHHHHHHHHh
Q 000133 92 LLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFS-TEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNL 170 (2100)
Q Consensus 92 ~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~-~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL 170 (2100)
...|++|+|+.+|++++++++..|+.+|.+++. +...+..+. ..|++|.|+++|... .++.++..++.+|+++
T Consensus 14 ~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~----~~~~~~~~~~~~~~i~~Lv~~L~~~--~~~~~~~~a~~~L~~l 87 (529)
T 1jdh_A 14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK----KEASRHAIMRSPQMVSAIVRTMQNT--NDVETARCTAGTLHNL 87 (529)
T ss_dssp ---CHHHHHHHHHTCSCHHHHHHHHHHHHHHHT----SHHHHHHHHTCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHH
T ss_pred hhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHc----CCccHHHHHhCcchHHHHHHHHhcC--CCHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999998 333344444 458999999999764 3456888999999999
Q ss_pred ccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHH
Q 000133 171 STSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAG 250 (2100)
Q Consensus 171 ~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~ 250 (2100)
+..+ ..+..+.+.|++|.|+++|+++++.++..|+++|.+++..++..+..+.+.|+++.|++++.+++ .+++..++.
T Consensus 88 s~~~-~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~ 165 (529)
T 1jdh_A 88 SHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTD 165 (529)
T ss_dssp TTSH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHH
T ss_pred HcCc-hhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHH
Confidence 8664 57788999999999999999999999999999999999887767888889999999999999854 689999999
Q ss_pred HHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhh
Q 000133 251 ALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQV 330 (2100)
Q Consensus 251 aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~ 330 (2100)
+|++++.++++++..+.+.|+++.|+.++.+.+ ....+..+..
T Consensus 166 ~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~--------~~~~~~~a~~----------------------------- 208 (529)
T 1jdh_A 166 CLQILAYGNQESKLIILASGGPQALVNIMRTYT--------YEKLLWTTSR----------------------------- 208 (529)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC--------CHHHHHHHHH-----------------------------
T ss_pred HHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCC--------hHHHHHHHHH-----------------------------
Confidence 999999988999999999999999999986543 1233333444
Q ss_pred hhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhc
Q 000133 331 ADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLIT 410 (2100)
Q Consensus 331 ~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~ 410 (2100)
+|.++..+++++..+.+.|+++.|+.++.
T Consensus 209 ---------------------------------------------------~L~~l~~~~~~~~~~~~~g~~~~L~~ll~ 237 (529)
T 1jdh_A 209 ---------------------------------------------------VLKVLSVCSSNKPAIVEAGGMQALGLHLT 237 (529)
T ss_dssp ---------------------------------------------------HHHHHTTSTTHHHHHHHTTHHHHHHTTTT
T ss_pred ---------------------------------------------------HHHHHhcCcccHHHHHHCCCHHHHHHHHh
Confidence 44444445555666777899999999999
Q ss_pred CCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHH
Q 000133 411 MATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLV 490 (2100)
Q Consensus 411 ~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv 490 (2100)
++++.+++.++++|.+|+...+... ...++++.|++++.+++++++..|+++|++|+.++++.+..+.+.|+++.|+
T Consensus 238 ~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~ 314 (529)
T 1jdh_A 238 DPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 314 (529)
T ss_dssp SSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHH
T ss_pred CCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHH
Confidence 9999999999999999998754321 1236799999999999999999999999999987778999999999999999
Q ss_pred HhccC--CCHHHHHHHHHHHHHHhcCChh---hHHHHHhCCcHHHHHHHhhcCC-hhHHHHHHHHHHHHhcCCCCCcHHH
Q 000133 491 QILES--GSAKAKEDSASILRNLCNHSED---IRACVESADAVPALLWLLKNGS-ANGKEIAAKTLNHLIHKSDTATISQ 564 (2100)
Q Consensus 491 ~lL~~--~~~~vre~A~~aL~~L~~~~~~---~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~Aa~aL~~L~~~~~~~~i~~ 564 (2100)
++|.+ .++++++.|+++|+||+..+++ .+..+.+.|++|.|+++|++++ +.+++.++++|+|++...+.
T Consensus 315 ~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~----- 389 (529)
T 1jdh_A 315 RTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN----- 389 (529)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-----
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhh-----
Confidence 99975 3489999999999999986443 5778889999999999999876 58999999999999763211
Q ss_pred HHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 000133 565 LTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSI 644 (2100)
Q Consensus 565 L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~ 644 (2100)
+..+.+.+++|.|+.++.++++++|+.|+|++.|.+...
T Consensus 390 ---------------------------------~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~-------- 428 (529)
T 1jdh_A 390 ---------------------------------HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE-------- 428 (529)
T ss_dssp ---------------------------------HHHHHHTTHHHHHHHHHHHHHHHHC-----------CBT--------
T ss_pred ---------------------------------hHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhc--------
Confidence 123445678999999999999999999999999843221
Q ss_pred hcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHH
Q 000133 645 AVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVS 724 (2100)
Q Consensus 645 ~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~ 724 (2100)
|+ ....++..++.++.+++.. + .++..+.+.|+++.|+.++.+++++++..|+++|++|..+++.+
T Consensus 429 --~~----------~~~~i~~~~~~al~~L~~~-~-~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~ 494 (529)
T 1jdh_A 429 --GV----------RMEEIVEGCTGALHILARD-V-HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAA 494 (529)
T ss_dssp --TB----------CHHHHHHHHHHHHHHHTTS-H-HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHH
T ss_pred --cc----------cHHHHHHHHHHHHHHHhcC-c-hHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHH
Confidence 11 1244667889999999764 3 55666899999999999999999999999999999999888888
Q ss_pred HHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHH
Q 000133 725 EKAIAEEIILPATRVLCEGTISGKTLAAAAIARL 758 (2100)
Q Consensus 725 ~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l 758 (2100)
..+.+.++++.|.+++.+++++++..|.++|.++
T Consensus 495 ~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 495 EAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 8888999999999999999999999999999887
No 7
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=3.8e-36 Score=412.59 Aligned_cols=545 Identities=19% Similarity=0.189 Sum_probs=440.0
Q ss_pred CCchHHHHHHHhcCCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCccc
Q 000133 53 SQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVG 132 (2100)
Q Consensus 53 ~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~ 132 (2100)
...++.++..|+++++++|..++..+... .+..+ ..|++|.|+.+|.++++.+|..|+.+|.+|+. +...
T Consensus 114 ~~~i~~lv~~L~~~~~~~r~~a~~~l~~~-----~~~~i-~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~----~~~~ 183 (780)
T 2z6g_A 114 DSAHPTNVQRLAEPSQMLKHAVVNLINYQ-----DDAEL-ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK----KEAS 183 (780)
T ss_dssp ------------CCSCHHHHHHHHHHHHH-----HHHHH-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHT----SHHH
T ss_pred cccHHHHHHHhcCccHHHHHHHHHHHHhh-----hHHHH-HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhC----CChh
Confidence 34689999999999999988888887743 22333 47899999999999999999999999999998 3333
Q ss_pred ccchh-ccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHH
Q 000133 133 SKIFS-TEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLAC 211 (2100)
Q Consensus 133 ~~~~~-~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~ 211 (2100)
+..+. ..|+++.|++.|... .++.++..++.+|++|+... .++..+.+.|+++.|+++|+++++.++..|+++|.+
T Consensus 184 ~~~i~~~~~~i~~Lv~~L~~~--~d~~vr~~Aa~aL~~Ls~~~-~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~n 260 (780)
T 2z6g_A 184 RHAIMRSPQMVSAIVRTMQNT--NDVETARCTSGTLHNLSHHR-EGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHN 260 (780)
T ss_dssp HHHHTTCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHTSH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHhccChHHHHHHHHcCC--CCHHHHHHHHHHHHHHhCCc-hhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 44455 458999999999864 35668889999999998765 557778899999999999999999999999999999
Q ss_pred HhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhh
Q 000133 212 MMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEY 291 (2100)
Q Consensus 212 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~ 291 (2100)
++...+..+..+.+.|+++.|+++|.+++ .+++..++.+|++++..+++++..+.+.|+++.|+.++...+
T Consensus 261 La~~~~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~-------- 331 (780)
T 2z6g_A 261 LLLHQEGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-------- 331 (780)
T ss_dssp HHHHSTTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCC--------
T ss_pred HhCCChhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC--------
Confidence 99887777788888999999999999854 689999999999999888999999999999999999997543
Q ss_pred hHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCC
Q 000133 292 AQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRL 371 (2100)
Q Consensus 292 ~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~ 371 (2100)
....++.++.+|.|++
T Consensus 332 ~~~~~~~a~~aL~~Ls---------------------------------------------------------------- 347 (780)
T 2z6g_A 332 YEKLLWTTSRVLKVLS---------------------------------------------------------------- 347 (780)
T ss_dssp CHHHHHHHHHHHHHHH----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhh----------------------------------------------------------------
Confidence 1234445555555544
Q ss_pred ChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhh
Q 000133 372 PFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLL 451 (2100)
Q Consensus 372 ~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL 451 (2100)
.++.++..+.+.|+++.|+.++.+.+..+++.++++|.+|+...... ....++++.|+.++
T Consensus 348 ----------------~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL 408 (780)
T 2z6g_A 348 ----------------VCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLL 408 (780)
T ss_dssp ----------------TSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHT
T ss_pred ----------------cChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHH
Confidence 33444556667789999999999999999999999999999875432 11236799999999
Q ss_pred CCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCC--CHHHHHHHHHHHHHHhcCChh---hHHHHHhCC
Q 000133 452 GLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG--SAKAKEDSASILRNLCNHSED---IRACVESAD 526 (2100)
Q Consensus 452 ~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~vre~A~~aL~~L~~~~~~---~~~~i~~~g 526 (2100)
++.++.++..|+++|++|+...++.+..+.+.|+++.|+++|.+. .+++++.|+++|+||+..+++ .+..+...|
T Consensus 409 ~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~ 488 (780)
T 2z6g_A 409 GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHY 488 (780)
T ss_dssp TCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcC
Confidence 999999999999999999987778899999999999999999763 359999999999999975444 467888999
Q ss_pred cHHHHHHHhhcCCh-hHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccc
Q 000133 527 AVPALLWLLKNGSA-NGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAAND 605 (2100)
Q Consensus 527 ~i~~Lv~lL~~~~~-~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~ 605 (2100)
+++.|+++|.+++. .+++.++++|+|++...+ .+..+.+.+
T Consensus 489 ~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~--------------------------------------~~~~i~~~g 530 (780)
T 2z6g_A 489 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA--------------------------------------NHAPLREQG 530 (780)
T ss_dssp CHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHH--------------------------------------HHHHHHHTT
T ss_pred CHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHH--------------------------------------HHHHHHHCC
Confidence 99999999998764 899999999999976211 122344567
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHH--HhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHH
Q 000133 606 AVETMIKILSSTKEETQAKSASALAG--IFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENRE 683 (2100)
Q Consensus 606 ~i~~Lv~lL~s~~~~~~~~Aa~aL~~--L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~ 683 (2100)
+++.|+++|.+++.++|+.|+|++.| +.. ....++++..++.+|++++.+ ..++
T Consensus 531 ~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~----------------------~~~~~~v~~~a~~aL~~La~~--~~~~ 586 (780)
T 2z6g_A 531 AIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE----------------------GVRMEEIVEACTGALHILARD--IHNR 586 (780)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC------CCST----------------------TCCHHHHHHHHHHHHHHHTTS--HHHH
T ss_pred CHHHHHHHHHhcchhHHHHHhhccccchhhc----------------------ccChHHHHHHHHHHHHHHhcC--hhhH
Confidence 89999999999999999999998877 211 112356888999999999754 3566
Q ss_pred HHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCc
Q 000133 684 VAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRK 763 (2100)
Q Consensus 684 ~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~ 763 (2100)
..+.+.|+++.|++++.+++++++..|+.+|++|..+++.+..+...++++.|.+++.+++..+++.|+++|.++....+
T Consensus 587 ~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 587 IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 66889999999999999999999999999999999888888888899999999999999999999999999999997665
Q ss_pred c
Q 000133 764 I 764 (2100)
Q Consensus 764 ~ 764 (2100)
.
T Consensus 667 ~ 667 (780)
T 2z6g_A 667 Q 667 (780)
T ss_dssp T
T ss_pred H
Confidence 3
No 8
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.7e-35 Score=397.77 Aligned_cols=512 Identities=20% Similarity=0.188 Sum_probs=423.6
Q ss_pred HHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchh-ccCChHHHHHHhhccCCCcchHHHHHHHHHHH
Q 000133 91 VLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFS-TEGVVPVLWEQLKNGLKSGNVVDNLLTGALRN 169 (2100)
Q Consensus 91 i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~-~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~n 169 (2100)
....|++|.|+.+|+++++.+|..|+.+|.+++.. ...+..+. ..|+++.|++.|... .++.++..++.+|++
T Consensus 10 ~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~----~~~~~~i~~~~~~i~~Lv~~L~~~--~~~~~~~~A~~~L~~ 83 (644)
T 2z6h_A 10 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK----EASRHAIMRSPQMVSAIVRTMQNT--NDVETARCTAGTLHN 83 (644)
T ss_dssp --CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTS----TTHHHHHTTCHHHHHHHHHHHHSC--CCHHHHHHHHHHHHH
T ss_pred hhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCC----ChhHHHHHhccChHHHHHHHHhcC--CCHHHHHHHHHHHHH
Confidence 35679999999999999999999999999999983 22344444 458999999999864 345688889999999
Q ss_pred hccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHH
Q 000133 170 LSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAA 249 (2100)
Q Consensus 170 L~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa 249 (2100)
|+... ..+..+.+.|+++.|+++|+++++.++..|+.+|.+++..++..+..+++.|+++.|+++|.+++ ..++..++
T Consensus 84 Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~ 161 (644)
T 2z6h_A 84 LSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN-VKFLAITT 161 (644)
T ss_dssp HTTSH-HHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHH
T ss_pred HhcCh-hhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCC-HHHHHHHH
Confidence 99765 47788999999999999999999999999999999999887767788889999999999999865 57888889
Q ss_pred HHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhh
Q 000133 250 GALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQ 329 (2100)
Q Consensus 250 ~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~ 329 (2100)
.+|++++.++++++..+.+.|+++.|+.++.+.+ ...+++.++.+|.|++
T Consensus 162 ~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~--------~~~~~~~a~~~L~nLs---------------------- 211 (644)
T 2z6h_A 162 DCLQILAYGNQESKLIILASGGPQALVNIMRTYT--------YEKLLWTTSRVLKVLS---------------------- 211 (644)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCC--------CHHHHHHHHHHHHHHT----------------------
T ss_pred HHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCC--------hHHHHHHHHHHHHHHh----------------------
Confidence 9999999888999999999999999999997643 1334445555555444
Q ss_pred hhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhh
Q 000133 330 VADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLI 409 (2100)
Q Consensus 330 ~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL 409 (2100)
.++.++..+.+.|+++.|+.++
T Consensus 212 ----------------------------------------------------------~~~~~~~~l~~~g~l~~L~~ll 233 (644)
T 2z6h_A 212 ----------------------------------------------------------VCSSNKPAIVEAGGMQALGLHL 233 (644)
T ss_dssp ----------------------------------------------------------TCTTHHHHHHHTTHHHHHHTTT
T ss_pred ----------------------------------------------------------cCcccHHHHHHCCCHHHHHHHH
Confidence 4445556677788999999999
Q ss_pred cCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHH
Q 000133 410 TMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPL 489 (2100)
Q Consensus 410 ~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~L 489 (2100)
.+.+..+++.++++|.+|+...+.. ....++++.|+.++++.++++++.|+++|++|+..+++++..+.+.|+++.|
T Consensus 234 ~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~L 310 (644)
T 2z6h_A 234 TDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 310 (644)
T ss_dssp TCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHH
Confidence 9999999999999999999875432 1123679999999999999999999999999998777889999999999999
Q ss_pred HHhccCC--CHHHHHHHHHHHHHHhcCCh---hhHHHHHhCCcHHHHHHHhhcCC-hhHHHHHHHHHHHHhcCCCCCcHH
Q 000133 490 VQILESG--SAKAKEDSASILRNLCNHSE---DIRACVESADAVPALLWLLKNGS-ANGKEIAAKTLNHLIHKSDTATIS 563 (2100)
Q Consensus 490 v~lL~~~--~~~vre~A~~aL~~L~~~~~---~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~Aa~aL~~L~~~~~~~~i~ 563 (2100)
+++|.+. .+++++.|+++|+||+..++ ..+..+.+.|+++.|+++|++.+ +.+++.++++|+|++...+.
T Consensus 311 v~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~---- 386 (644)
T 2z6h_A 311 VRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN---- 386 (644)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG----
T ss_pred HHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH----
Confidence 9999864 38999999999999997544 35666888999999999999875 68999999999999763211
Q ss_pred HHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHH--HhcCChhhHH
Q 000133 564 QLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAG--IFETRKDLRE 641 (2100)
Q Consensus 564 ~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~--L~~~~~~~~~ 641 (2100)
+..+.+.++++.|+++|.+++.++|+.|+|++.+ +..+
T Consensus 387 ----------------------------------~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~------ 426 (644)
T 2z6h_A 387 ----------------------------------HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG------ 426 (644)
T ss_dssp ----------------------------------HHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCS------
T ss_pred ----------------------------------HHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhccc------
Confidence 1234456789999999999999999999998877 2211
Q ss_pred HHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCc
Q 000133 642 SSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDS 721 (2100)
Q Consensus 642 ~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~ 721 (2100)
..+..++..++.+|.+++.+. .++..+.+.++++.|++++.+++++++..|+++|++|..++
T Consensus 427 ----------------~~~~~v~~~a~~aL~~La~~~--~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~ 488 (644)
T 2z6h_A 427 ----------------VRMEEIVEGCTGALHILARDV--HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK 488 (644)
T ss_dssp ----------------SCHHHHHHHHHHHHHHHTTSH--HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSH
T ss_pred ----------------ccHHHHHHHHHHHHHHHhcCH--HHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCH
Confidence 134568889999999997653 56666889999999999999999999999999999999888
Q ss_pred HHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCc
Q 000133 722 EVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRK 763 (2100)
Q Consensus 722 ~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~ 763 (2100)
+.+..+...++++.|.+++.+++.+++..|+++|.++.....
T Consensus 489 ~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~ 530 (644)
T 2z6h_A 489 EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 530 (644)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCc
Confidence 888888899999999999999999999999999999876553
No 9
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=1.1e-33 Score=371.19 Aligned_cols=417 Identities=18% Similarity=0.196 Sum_probs=357.2
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhc-cCccchHHHHhCCcHHHHHHhhCC-CCHHHHHHHHHHHHHhccCCcccHH
Q 000133 401 AKRLLVGLITMATNEVQEELVRALLKLCN-NEGSLWRALQGREGIQLLISLLGL-SSEQQQECSVALLCLLSNENDDSKW 478 (2100)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~-~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~v~~~A~~aL~nLs~~~~~~~~ 478 (2100)
.++.++..+.+.|++.|..|+..++.+.+ ......+.+++.|+||.|+++|++ +++.+|.+|+|+|+||++++++++.
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 47889999999999999999999998654 334457889999999999999975 5689999999999999988999999
Q ss_pred HHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCCh-----hHHHHHHHHHHHH
Q 000133 479 AITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSA-----NGKEIAAKTLNHL 553 (2100)
Q Consensus 479 ~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-----~~~~~Aa~aL~~L 553 (2100)
.+++.|+||.|+++|.++++++|+.|+|+|+||+.++++.|..+.+.|++++|+.++.+.+. ..++.++++|+++
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999889999999999999999999987543 3677889999999
Q ss_pred hcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 000133 554 IHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIF 633 (2100)
Q Consensus 554 ~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~ 633 (2100)
+...++. .. .....+++|.|+.++.+++++++..|+++|.+|+
T Consensus 218 ~~~~~~~-------------~~------------------------~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~ 260 (510)
T 3ul1_B 218 CRNKNPA-------------PP------------------------LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLT 260 (510)
T ss_dssp HCCCSSC-------------CC------------------------HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred hhcccch-------------hH------------------------HHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 8755331 00 0011345899999999999999999999999999
Q ss_pred cCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHH
Q 000133 634 ETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCA 713 (2100)
Q Consensus 634 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~a 713 (2100)
.++++....+...|++|.|+.++.+.+..++..++++|++++.+. +.++..+++.|+++.|+.++.++++++|+.|+|+
T Consensus 261 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~-~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~a 339 (510)
T 3ul1_B 261 DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWT 339 (510)
T ss_dssp SSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHH
T ss_pred hchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCC-HHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHH
Confidence 988888888999999999999999999999999999999997765 4566668999999999999999999999999999
Q ss_pred HHHHhcC-cHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhccccc
Q 000133 714 LANLILD-SEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSV 792 (2100)
Q Consensus 714 L~~L~~~-~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v 792 (2100)
|+||+.+ .+....+++.++++.|+.++++++..++..|+|+|.++...... ....++...|++++|+++|++.+.++
T Consensus 340 L~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~--~~~~~L~~~g~i~~L~~LL~~~d~~i 417 (510)
T 3ul1_B 340 MSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTV--EQIVYLVHCGIIEPLMNLLSAKDTKI 417 (510)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCH--HHHHHHHHTTCHHHHHHGGGCSCHHH
T ss_pred HHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCH--HHHHHHHHCCCHHHHHHHhcCCCHHH
Confidence 9999965 45566677899999999999999999999999999999976543 23444567999999999999988888
Q ss_pred chHhHHHHHHHHHHcCCCCCCCCcccceeeccCCCchhhhhhhccCChhHHHHHHHHHHHHhcCCcc
Q 000133 793 ATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQPA 859 (2100)
Q Consensus 793 ~~~~al~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~a~~~L~~L~~~~~~ 859 (2100)
. ..++.+|.++++..+... ..+.+...++..++++.|...+.+.|+.++++|..+|++||+++.+
T Consensus 418 ~-~~~L~aL~nil~~~~~~~-~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~ 482 (510)
T 3ul1_B 418 I-QVILDAISNIFQAAEKLG-ETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEE 482 (510)
T ss_dssp H-HHHHHHHHHHHHHHHTTT-CHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC----
T ss_pred H-HHHHHHHHHHHHHhHhcc-chHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccc
Confidence 8 999999999987544311 2244556677889999999999999999999999999999875543
No 10
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=6.6e-33 Score=366.00 Aligned_cols=418 Identities=17% Similarity=0.193 Sum_probs=358.0
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhh-ccCccchHHHHhCCcHHHHHHhhC-CCCHHHHHHHHHHHHHhccCCcccH
Q 000133 400 EAKRLLVGLITMATNEVQEELVRALLKLC-NNEGSLWRALQGREGIQLLISLLG-LSSEQQQECSVALLCLLSNENDDSK 477 (2100)
Q Consensus 400 g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~~i~~~g~i~~Lv~lL~-s~~~~v~~~A~~aL~nLs~~~~~~~ 477 (2100)
..++.++..+.+++++.|..|+..++++- .......+.+++.|+||.|+.+|+ +.++.++..|+|+|+||+.++++.+
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 35788999999999999999999999864 444456788999999999999997 4568999999999999998888899
Q ss_pred HHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCCh-----hHHHHHHHHHHH
Q 000133 478 WAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSA-----NGKEIAAKTLNH 552 (2100)
Q Consensus 478 ~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-----~~~~~Aa~aL~~ 552 (2100)
..+++.|+||.|+.+|.++++++++.|+|+|+||+.+++++|..+.+.|++++|+.++...+. ..++.++++|++
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 235 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 235 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999889999999999999999999987543 357889999999
Q ss_pred HhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000133 553 LIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGI 632 (2100)
Q Consensus 553 L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L 632 (2100)
++.+.++. +. .....+++|.|+.++.+++++++..|+|+|.++
T Consensus 236 l~~~~~~~-------------~~------------------------~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l 278 (529)
T 3tpo_A 236 LCRNKNPA-------------PP------------------------LDAVEQILPTLVRLLHHNDPEVLADSCWAISYL 278 (529)
T ss_dssp HHCCCTTC-------------CC------------------------HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHhcccch-------------hh------------------------HHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 98755431 00 011134589999999999999999999999999
Q ss_pred hcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHH
Q 000133 633 FETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATC 712 (2100)
Q Consensus 633 ~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~ 712 (2100)
+.++++....+...|++|.|+.++.+.+..++..++.+|++++.+. +.++..+.+.|+++.|+.++.++++++++.|+|
T Consensus 279 ~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~-~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~ 357 (529)
T 3tpo_A 279 TDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATW 357 (529)
T ss_dssp HSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHH
T ss_pred hhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccc-hHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHH
Confidence 9998888888999999999999999999999999999999998765 456666899999999999999999999999999
Q ss_pred HHHHHhcC-cHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcccc
Q 000133 713 ALANLILD-SEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGS 791 (2100)
Q Consensus 713 aL~~L~~~-~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~ 791 (2100)
+|+||+.+ ++....+++.++++.|+.++.+++..++..|+|+|.++..+... ....++...|++++|+++|.+.+.+
T Consensus 358 aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~--~~~~~l~~~g~i~~L~~LL~~~d~~ 435 (529)
T 3tpo_A 358 TMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTV--EQIVYLVHCGIIEPLMNLLSAKDTK 435 (529)
T ss_dssp HHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH--HHHHHHHHTTCHHHHHHGGGCSCHH
T ss_pred HHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCH--HHHHHHHHCcCHHHHHHHhcCCCHH
Confidence 99999966 45566677899999999999999999999999999999876543 2334456699999999999998888
Q ss_pred cchHhHHHHHHHHHHcCCCCCCCCcccceeeccCCCchhhhhhhccCChhHHHHHHHHHHHHhcCCcc
Q 000133 792 VATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQPA 859 (2100)
Q Consensus 792 v~~~~al~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~a~~~L~~L~~~~~~ 859 (2100)
+. ..++.+|.++++..+... ..+.+...++..++++.|...+.+.|..++++|..+|++||+++.+
T Consensus 436 i~-~~~L~aL~nil~~~~~~~-~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~ 501 (529)
T 3tpo_A 436 II-QVILDAISNIFQAAEKLG-ETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEE 501 (529)
T ss_dssp HH-HHHHHHHHHHHHHHHTTT-CHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC-----
T ss_pred HH-HHHHHHHHHHHHHhHhcc-ChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccc
Confidence 88 899999999987544311 2345566778889999999999999999999999999999875443
No 11
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=1.4e-31 Score=351.18 Aligned_cols=409 Identities=16% Similarity=0.191 Sum_probs=350.8
Q ss_pred CHHHHHHhHccCCHHHHHHHHHHHHHHhhcC-cchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHH
Q 000133 186 GIDILVKLLTLGQSSTQAHVCFLLACMMEED-VSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARR 264 (2100)
Q Consensus 186 ~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~ 264 (2100)
.++.+++.+.++|++.|..|+..++++.+.. .+....+++.|++|.|+++|+.+++.+++..|+|+|+||+.+++++++
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 5899999999999999999999999876443 345789999999999999998877688999999999999999999999
Q ss_pred HHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHh
Q 000133 265 EIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIY 344 (2100)
Q Consensus 265 ~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l 344 (2100)
.+++.|+||.|+.+|.+++ ..++++|+++|.|++.+.
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~---------~~v~e~A~~aL~nLa~d~---------------------------------- 174 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPH---------AHISEQAVWALGNIAGDG---------------------------------- 174 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSC---------HHHHHHHHHHHHHHHTTC----------------------------------
T ss_pred HHHHCCCHHHHHHHHcCCC---------HHHHHHHHHHHHHHHhCC----------------------------------
Confidence 9999999999999998765 678888888888887531
Q ss_pred ccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCC-----HHHHHH
Q 000133 345 DSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMAT-----NEVQEE 419 (2100)
Q Consensus 345 ~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~-----~~v~~~ 419 (2100)
+..+..+.+.|+++.|+.++.+.+ ...++.
T Consensus 175 ---------------------------------------------~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~ 209 (510)
T 3ul1_B 175 ---------------------------------------------SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRN 209 (510)
T ss_dssp ---------------------------------------------HHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHH
T ss_pred ---------------------------------------------HHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHH
Confidence 122344556788888888887543 457889
Q ss_pred HHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHH
Q 000133 420 LVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAK 499 (2100)
Q Consensus 420 A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 499 (2100)
+++++.+++.+...........+++|.|+.++.+++++++..|+++|++|+.+..+....+.+.|+++.|+++|.+++..
T Consensus 210 a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 289 (510)
T 3ul1_B 210 LTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELP 289 (510)
T ss_dssp HHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHH
T ss_pred HHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChh
Confidence 99999999987655444444457899999999999999999999999999987777788899999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHH
Q 000133 500 AKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVY 579 (2100)
Q Consensus 500 vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~ 579 (2100)
++..++++|+|++..++..+..+.+.|+++.|+.+|+++++.+++.|+++|+|++.....
T Consensus 290 v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~-------------------- 349 (510)
T 3ul1_B 290 IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD-------------------- 349 (510)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHH--------------------
T ss_pred hhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHH--------------------
Confidence 999999999999998889999999999999999999999999999999999999763321
Q ss_pred HHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHhcCchHHHHHhhcC
Q 000133 580 VLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFET-RKDLRESSIAVKTLWSVMKLLDV 658 (2100)
Q Consensus 580 a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~-~~~~~~~~~~~g~v~~Lv~lL~~ 658 (2100)
....+.+.+++|.|+.++.+++.++|+.|+|+|+|++.+ +.+.+..+.+.|++++|+.+|.+
T Consensus 350 -----------------~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~ 412 (510)
T 3ul1_B 350 -----------------QIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA 412 (510)
T ss_dssp -----------------HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGC
T ss_pred -----------------HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC
Confidence 122445678899999999999999999999999999875 35677789999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhcCC-----chhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhc
Q 000133 659 GSECILVEASRCLAAIFLSV-----RENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLIL 719 (2100)
Q Consensus 659 ~~~~v~~~aa~aL~~L~~~~-----~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~ 719 (2100)
.+++++..++.+|.++.... .+..+..+.+.|+++.|-.|..+++.++++.|...|...+.
T Consensus 413 ~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 413 KDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 478 (510)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 99999999999999997521 12334457889999999999999999999999999987764
No 12
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=2e-31 Score=342.63 Aligned_cols=398 Identities=20% Similarity=0.183 Sum_probs=321.3
Q ss_pred hcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhcc
Q 000133 93 LGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLST 172 (2100)
Q Consensus 93 ~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~ 172 (2100)
..+.+|+||.+|.+++++.+..|+.+|.+++.+ +...+..+++.|+||.|+++|.+. +..++..++++|+||+.
T Consensus 46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~---~~~~k~~V~~~G~Ip~LV~LL~s~---~~~vq~~Aa~AL~nLa~ 119 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYR---NDKVKTDVRKLKGIPVLVGLLDHP---KKEVHLGACGALKNISF 119 (584)
T ss_dssp CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTT---CHHHHHHHHHTTHHHHHHHGGGCS---SHHHHHHHHHHHHHHTS
T ss_pred ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcC---ChHHHHHHHHcCCcHHHHHHHCCC---CHHHHHHHHHHHHHHHc
Confidence 458899999999999999999999999999972 455577789999999999999874 45699999999999997
Q ss_pred C-ChhhHHHHHhcCCHHHHHHhHcc-CCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhc-------------
Q 000133 173 S-TEGFWAATVQAGGIDILVKLLTL-GQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLG------------- 237 (2100)
Q Consensus 173 ~-~~~~~~~i~~~g~v~~Lv~lL~s-~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~------------- 237 (2100)
. ++.++..|+++|+||+|+++|++ ++.+++++++.+|++|+.. +.++..+++ ++++.|++++.
T Consensus 120 ~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~ 197 (584)
T 3l6x_A 120 GRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNED 197 (584)
T ss_dssp SSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC------
T ss_pred cCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhccccccccccccc
Confidence 5 57888999999999999999998 5789999999999999984 457778874 68999999872
Q ss_pred ----CCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCC-hHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcc
Q 000133 238 ----SGNEASVRAEAAGALKSLSDHCKDARREIAGSNG-IPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSN 312 (2100)
Q Consensus 238 ----~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~-i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~ 312 (2100)
+..+.+++.+|+++|+||+..++++|+.+++++| ++.|+.++.+. ...+..+...+++|+++|+||+.....
T Consensus 198 ~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~---~~~~~~~~~~~enav~aL~NLs~~~~~ 274 (584)
T 3l6x_A 198 CKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAE---IGQKDSDSKLVENCVCLLRNLSYQVHR 274 (584)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHH---HHTTCCSCHHHHHHHHHHHHHHTTHHH
T ss_pred ccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHh---hcccCccHHHHHHHHHHHHHhhccccc
Confidence 2235789999999999999988888999999766 56999998642 001123467899999999999985322
Q ss_pred hhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCcc
Q 000133 313 VISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLL 392 (2100)
Q Consensus 313 ~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~ 392 (2100)
.+..+..+.+.. ... .......++..
T Consensus 275 e~~~~~~~~~~~----------------------------------------------~~~--------~~~~~~~~~~G 300 (584)
T 3l6x_A 275 EIPQAERYQEAA----------------------------------------------PNV--------ANNTGTSPARG 300 (584)
T ss_dssp HSTTCCC--------------------------------------------------------------------CCCCG
T ss_pred cccchhhhhhhc----------------------------------------------ccc--------cccccccCchh
Confidence 221110000000 000 00001234455
Q ss_pred chhhhccccHHHHHHhhc-CCCHHHHHHHHHHHHHhhccCc----cchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHH
Q 000133 393 SIKLENSEAKRLLVGLIT-MATNEVQEELVRALLKLCNNEG----SLWRALQGREGIQLLISLLGLSSEQQQECSVALLC 467 (2100)
Q Consensus 393 ~~~l~~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~~L~~~~~----~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~ 467 (2100)
...+.+.++++.|+.+++ +.++.+++.|+++|.|||.++. ..+..+.+.+++|.|+++|.++++.+++.|+++|+
T Consensus 301 ve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~ 380 (584)
T 3l6x_A 301 YELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALR 380 (584)
T ss_dssp GGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 567778888999999996 5689999999999999998752 23445667799999999999999999999999999
Q ss_pred HhccCCcccHHHHHhcCChHHHHHhccCC--------CHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcC-
Q 000133 468 LLSNENDDSKWAITAAGGIPPLVQILESG--------SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNG- 538 (2100)
Q Consensus 468 nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~--------~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~- 538 (2100)
||+. ++.++..| ..|++|.|+++|.++ +.+++..|+++|.||+..+++++..+.+.|++|.|+++++++
T Consensus 381 nLs~-~~~~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~ 458 (584)
T 3l6x_A 381 NLAV-DARNKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGN 458 (584)
T ss_dssp HHHT-TCSCHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSS
T ss_pred HHhC-ChhHHHHH-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCC
Confidence 9996 56777666 789999999999876 478899999999999988899999999999999999999986
Q ss_pred -ChhHHHHHHHHHHHHhcCC
Q 000133 539 -SANGKEIAAKTLNHLIHKS 557 (2100)
Q Consensus 539 -~~~~~~~Aa~aL~~L~~~~ 557 (2100)
++.+++.|+++|++|+.+.
T Consensus 459 ~~~~v~k~Aa~vL~nl~~~~ 478 (584)
T 3l6x_A 459 RSEKEVRAAALVLQTIWGYK 478 (584)
T ss_dssp SCHHHHHHHHHHHHHHHTSH
T ss_pred CChHHHHHHHHHHHHHHcCH
Confidence 8899999999999999754
No 13
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1e-30 Score=345.02 Aligned_cols=410 Identities=16% Similarity=0.183 Sum_probs=350.9
Q ss_pred CCHHHHHHhHccCCHHHHHHHHHHHHHHhhc-CcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhH
Q 000133 185 GGIDILVKLLTLGQSSTQAHVCFLLACMMEE-DVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDAR 263 (2100)
Q Consensus 185 g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~ 263 (2100)
..++.+++.+.+++++.+..|+..++++.+. ..+....+++.|++|.|+++|..+++.+++..|+|+|+|++.++++.+
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 3588999999999999999999999887643 334578899999999999999887778899999999999999999999
Q ss_pred HHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHH
Q 000133 264 REIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMI 343 (2100)
Q Consensus 264 ~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~ 343 (2100)
..+++.|+||.|+.++.+++ ..++++|+++|.|++.+.
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~---------~~v~e~A~~aL~nLa~~~--------------------------------- 193 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPH---------AHISEQAVWALGNIAGAG--------------------------------- 193 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSC---------HHHHHHHHHHHHHHHTTC---------------------------------
T ss_pred HHHHHCCCHHHHHHHHcCCC---------HHHHHHHHHHHHHHhccC---------------------------------
Confidence 99999999999999998775 677888888888887531
Q ss_pred hccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCC-----HHHHH
Q 000133 344 YDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMAT-----NEVQE 418 (2100)
Q Consensus 344 l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~-----~~v~~ 418 (2100)
+..+..+.+.|+++.|+.++...+ ...++
T Consensus 194 ----------------------------------------------~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~ 227 (529)
T 3tpo_A 194 ----------------------------------------------SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLR 227 (529)
T ss_dssp ----------------------------------------------HHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHH
T ss_pred ----------------------------------------------HHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHH
Confidence 223445566788899998887543 45788
Q ss_pred HHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCH
Q 000133 419 ELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSA 498 (2100)
Q Consensus 419 ~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 498 (2100)
.++++|.+++.+...........+++|.|+.++.+++++++..|+++|++++.+..+....+...|+++.|+.+|.+++.
T Consensus 228 ~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~ 307 (529)
T 3tpo_A 228 NLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATEL 307 (529)
T ss_dssp HHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCH
T ss_pred HHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCCh
Confidence 99999999998865544444445789999999999999999999999999998777788889999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHH
Q 000133 499 KAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKV 578 (2100)
Q Consensus 499 ~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~ 578 (2100)
.++..++++|+|++.+++..+..+.+.|+++.|+.+|.++++.+++.|+++|+|++.+...
T Consensus 308 ~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~------------------- 368 (529)
T 3tpo_A 308 PIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD------------------- 368 (529)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHH-------------------
T ss_pred hHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHH-------------------
Confidence 9999999999999998889999999999999999999999999999999999999864321
Q ss_pred HHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHhcCchHHHHHhhc
Q 000133 579 YVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFET-RKDLRESSIAVKTLWSVMKLLD 657 (2100)
Q Consensus 579 ~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~-~~~~~~~~~~~g~v~~Lv~lL~ 657 (2100)
....+.+.+++|.|+.++.+++.++++.|+|+|+|++.+ +++.+..+.+.|++++|+.+|.
T Consensus 369 ------------------~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~ 430 (529)
T 3tpo_A 369 ------------------QIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS 430 (529)
T ss_dssp ------------------HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGG
T ss_pred ------------------HHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhc
Confidence 122345678899999999999999999999999999874 4567788999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcC-----CchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhc
Q 000133 658 VGSECILVEASRCLAAIFLS-----VRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLIL 719 (2100)
Q Consensus 658 ~~~~~v~~~aa~aL~~L~~~-----~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~ 719 (2100)
+.+.+++..++.+|.++... ..+.....+.+.|+++.|..|..+++.++++.|...|..-+.
T Consensus 431 ~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~ 497 (529)
T 3tpo_A 431 AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 497 (529)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 99999999999999999642 112234447899999999999999999999999998877663
No 14
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.98 E-value=1.5e-30 Score=334.69 Aligned_cols=380 Identities=18% Similarity=0.202 Sum_probs=305.5
Q ss_pred hcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcC-ChH
Q 000133 183 QAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDH-CKD 261 (2100)
Q Consensus 183 ~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~-~~~ 261 (2100)
..+.++.|+.+|++++++++..|+++|.+++..+..++..+++.|+||.|+++|.+++ .+++..|+++|+||+.+ +++
T Consensus 46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~ 124 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQD 124 (584)
T ss_dssp CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHH
T ss_pred ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHH
Confidence 4688999999999999999999999999999888889999999999999999999865 68999999999999985 689
Q ss_pred hHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHH
Q 000133 262 ARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASAL 341 (2100)
Q Consensus 262 ~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll 341 (2100)
+|..|+++||||+|+.+|.+.. +..++++++++|+||+..
T Consensus 125 nk~~I~~~GaIp~LV~LL~s~~--------~~~~~e~aa~aL~nLS~~-------------------------------- 164 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRKAR--------DMDLTEVITGTLWNLSSH-------------------------------- 164 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCC--------SHHHHHHHHHHHHHHTTS--------------------------------
T ss_pred HHHHHHHcCCHHHHHHHHcCCC--------CHHHHHHHHHHHHHHhCC--------------------------------
Confidence 9999999999999999997532 256777888888877752
Q ss_pred HHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhh------------
Q 000133 342 MIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLI------------ 409 (2100)
Q Consensus 342 ~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL------------ 409 (2100)
++++..+.+ ++++.|+.++
T Consensus 165 ------------------------------------------------~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~ 195 (584)
T 3l6x_A 165 ------------------------------------------------DSIKMEIVD-HALHALTDEVIIPHSGWEREPN 195 (584)
T ss_dssp ------------------------------------------------GGGHHHHHH-HTHHHHHHHTHHHHHCCC----
T ss_pred ------------------------------------------------chhhHHHHh-ccHHHHHHHHhccccccccccc
Confidence 222222332 3455555544
Q ss_pred ------cCCCHHHHHHHHHHHHHhhccCccchHHHHhCCc-HHHHHHhhCC------CCHHHHHHHHHHHHHhccCCc--
Q 000133 410 ------TMATNEVQEELVRALLKLCNNEGSLWRALQGREG-IQLLISLLGL------SSEQQQECSVALLCLLSNEND-- 474 (2100)
Q Consensus 410 ------~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~-i~~Lv~lL~s------~~~~v~~~A~~aL~nLs~~~~-- 474 (2100)
...+.+++++|+++|+||+..+++.++.+++.+| ++.|+.++++ .+...++.|+++|.||+....
T Consensus 196 ~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e 275 (584)
T 3l6x_A 196 EDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHRE 275 (584)
T ss_dssp ------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHH
T ss_pred ccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcccccc
Confidence 2346899999999999999988888899988766 6899999874 467889999999999985311
Q ss_pred -----------------------ccHHHHHhcCChHHHHHhcc-CCCHHHHHHHHHHHHHHhcCC----hhhHHHHHhCC
Q 000133 475 -----------------------DSKWAITAAGGIPPLVQILE-SGSAKAKEDSASILRNLCNHS----EDIRACVESAD 526 (2100)
Q Consensus 475 -----------------------~~~~~i~~~g~i~~Lv~lL~-~~~~~vre~A~~aL~~L~~~~----~~~~~~i~~~g 526 (2100)
.....+...++++.|+.+|. +.++.+++.|+++|.|||... ..++..+.++|
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~ 355 (584)
T 3l6x_A 276 IPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEK 355 (584)
T ss_dssp STTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHH
T ss_pred ccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcC
Confidence 01112223345677889996 458999999999999998753 24455666789
Q ss_pred cHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccch
Q 000133 527 AVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDA 606 (2100)
Q Consensus 527 ~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~ 606 (2100)
++|.|+++|.++++.+++.|+++|+||+.+... +..+ ..++
T Consensus 356 glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~--------------------------------------~~~I-~~g~ 396 (584)
T 3l6x_A 356 ALSAIADLLTNEHERVVKAASGALRNLAVDARN--------------------------------------KELI-GKHA 396 (584)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSC--------------------------------------HHHH-HHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhH--------------------------------------HHHH-HhCC
Confidence 999999999999999999999999999874432 1122 3567
Q ss_pred HHHHHHHhcCC--------CHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCC--CHHHHHHHHHHHHHHhc
Q 000133 607 VETMIKILSST--------KEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVG--SECILVEASRCLAAIFL 676 (2100)
Q Consensus 607 i~~Lv~lL~s~--------~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~--~~~v~~~aa~aL~~L~~ 676 (2100)
+|.|+.+|.++ ++++...|+++|.||+..++++...+.+.|+||.|+.+++++ ++.+++.|+++|.+|..
T Consensus 397 ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 397 IPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp HHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 99999999876 578999999999999988899999999999999999999876 88999999999999977
Q ss_pred CCchhHHHHHHhCCChH
Q 000133 677 SVRENREVAAVARDALS 693 (2100)
Q Consensus 677 ~~~~~~~~~~~~~~~l~ 693 (2100)
+. ..+..+.+.|+=+
T Consensus 477 ~~--elr~~~kk~G~~~ 491 (584)
T 3l6x_A 477 YK--ELRKPLEKEGWKK 491 (584)
T ss_dssp SH--HHHHHHHTTTCCG
T ss_pred CH--HHHHHHHHcCCCH
Confidence 53 3444355555443
No 15
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.97 E-value=8.3e-31 Score=330.91 Aligned_cols=369 Identities=17% Similarity=0.198 Sum_probs=292.4
Q ss_pred cCCchHHHHHHHhcCCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhhcCC------------CHHHHHHHHHHH
Q 000133 52 HSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSS------------SAEGQIAAAKTI 119 (2100)
Q Consensus 52 ~~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~s~------------~~~~~~~A~~aL 119 (2100)
+...++.|++.+.+.+.+ ++.+.|..++.+++.|..+.+.|++|.||.+|+.. +++.+..|++||
T Consensus 30 ~~~~~~~l~~~~~~~~~~---~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al 106 (458)
T 3nmz_A 30 KVEMVYSLLSMLGTHDKD---DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAAL 106 (458)
T ss_dssp ---------------CCH---HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCHH---HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHH
Confidence 345678888888777665 58999999999999999999999999999999863 369999999999
Q ss_pred HHHhccCCCCcccccchhccCCh----------HHHHHHhhccC-CCc--c-hHH-------HHHHHHHHHhccCChhhH
Q 000133 120 YAVSQGGAKDYVGSKIFSTEGVV----------PVLWEQLKNGL-KSG--N-VVD-------NLLTGALRNLSTSTEGFW 178 (2100)
Q Consensus 120 ~~Ls~~~~~~~~~~~~~~~~g~v----------p~L~~lL~~~~-~~~--~-~v~-------~~a~~aL~nL~~~~~~~~ 178 (2100)
.||..+.. +. .....+.|++ +.+++++.... ..+ + .+. ..|.++|.|++.+ +.+|
T Consensus 107 ~ni~~~~~-~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R 182 (458)
T 3nmz_A 107 HNIIHSQP-DD--KRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHR 182 (458)
T ss_dssp HHHHHHSC-SC--HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHH
T ss_pred HHHHccCc-ch--hHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHH
Confidence 99999632 22 3344566777 66777776653 111 1 032 3789999999754 7899
Q ss_pred HHHHhcCCHHHHHHhHcc-----------CCHHHHHHHHHHHHHHhhcCcchhhHHhh-hchHHHHHHHhcCCCCHHHHH
Q 000133 179 AATVQAGGIDILVKLLTL-----------GQSSTQAHVCFLLACMMEEDVSVCSRVLA-ADATKQLLKLLGSGNEASVRA 246 (2100)
Q Consensus 179 ~~i~~~g~v~~Lv~lL~s-----------~~~~v~~~a~~~L~~L~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~v~~ 246 (2100)
..|++.|++++|+.+|.. .++.++.+|+++|.+|+..++.++..+.. .|.+|.|+++|.+++ .+++.
T Consensus 183 ~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~-~~v~~ 261 (458)
T 3nmz_A 183 HAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSES-EDLQQ 261 (458)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSC-HHHHH
T ss_pred HHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCC-HHHHH
Confidence 999999999999999952 34678999999999999887766666654 556999999999754 68999
Q ss_pred HHHHHHHHhhcC-ChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCC
Q 000133 247 EAAGALKSLSDH-CKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCS 325 (2100)
Q Consensus 247 ~Aa~aL~~Ls~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~ 325 (2100)
.|+++|+||+.+ ++++|..+++.||||+|+.+|...
T Consensus 262 ~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s------------------------------------------- 298 (458)
T 3nmz_A 262 VIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV------------------------------------------- 298 (458)
T ss_dssp HHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTC-------------------------------------------
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcC-------------------------------------------
Confidence 999999999985 577888888889998888865321
Q ss_pred ChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHH
Q 000133 326 SPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLL 405 (2100)
Q Consensus 326 ~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~L 405 (2100)
T Consensus 299 -------------------------------------------------------------------------------- 298 (458)
T 3nmz_A 299 -------------------------------------------------------------------------------- 298 (458)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhccCccchHHHH-hCCcHHHHHHhhCCCCH----HHHHHHHHHHHHhcc---CCcccH
Q 000133 406 VGLITMATNEVQEELVRALLKLCNNEGSLWRALQ-GREGIQLLISLLGLSSE----QQQECSVALLCLLSN---ENDDSK 477 (2100)
Q Consensus 406 v~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~-~~g~i~~Lv~lL~s~~~----~v~~~A~~aL~nLs~---~~~~~~ 477 (2100)
.++.+++.|+.+|+||+..+++++..+. ..|+++.|+.+|.++++ ++++.|+++|+||+. .+++++
T Consensus 299 ------~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~ 372 (458)
T 3nmz_A 299 ------KKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR 372 (458)
T ss_dssp ------CSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ------CCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHH
Confidence 2345566677777777775555566666 78999999999997755 489999999999996 688999
Q ss_pred HHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCC
Q 000133 478 WAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKS 557 (2100)
Q Consensus 478 ~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~ 557 (2100)
..+.+.|++|+|+++|.+++.++++.|+|+|+||+..+++.+..+.+.|++|+|+++|+++++++++.|+++|.||+.+.
T Consensus 373 ~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 373 QILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999777999999999999999999999999999999999999998754
No 16
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.97 E-value=2.2e-29 Score=333.91 Aligned_cols=417 Identities=18% Similarity=0.184 Sum_probs=359.2
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCc-cchHHHHhCCcHHHHHHhhCCCC-HHHHHHHHHHHHHhccCCcccH
Q 000133 400 EAKRLLVGLITMATNEVQEELVRALLKLCNNEG-SLWRALQGREGIQLLISLLGLSS-EQQQECSVALLCLLSNENDDSK 477 (2100)
Q Consensus 400 g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~s~~-~~v~~~A~~aL~nLs~~~~~~~ 477 (2100)
..++.|+..+.++++.+|..|+++|+++..... .....+.+.|++|.|+.+|++++ +.++..|+++|++++.++++.+
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 458899999999999999999999999976654 56788889999999999999887 9999999999999998778999
Q ss_pred HHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHh-hcCChhHHHHHHHHHHHHhcC
Q 000133 478 WAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLL-KNGSANGKEIAAKTLNHLIHK 556 (2100)
Q Consensus 478 ~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~Aa~aL~~L~~~ 556 (2100)
..+.+.|+++.|+.+|.++++.+++.|+|+|++|+..++..+..+.+.|++++|+.++ .+.++.++..++++|++|+..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999998888999999999999999999 567889999999999999875
Q ss_pred CCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Q 000133 557 SDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETR 636 (2100)
Q Consensus 557 ~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~ 636 (2100)
.... . .....++++.|+.++.++++.++..|+++|.+++.+.
T Consensus 234 ~~~~--------------~------------------------~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~ 275 (528)
T 4b8j_A 234 KPQP--------------S------------------------FEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGT 275 (528)
T ss_dssp SSCC--------------C------------------------HHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSC
T ss_pred CCCC--------------c------------------------HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC
Confidence 4210 0 0112567999999999999999999999999999987
Q ss_pred hhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCC-CHHHHHHHHHHHH
Q 000133 637 KDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSP-VLEVAEQATCALA 715 (2100)
Q Consensus 637 ~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~-~~evr~~aa~aL~ 715 (2100)
++..+.+...|++|.|+.+|.++++.++..|+++|++++.+.. .....+++.|+++.|+.++.++ ++.++..|+++|+
T Consensus 276 ~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~ 354 (528)
T 4b8j_A 276 NDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDD-AQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTIS 354 (528)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH-HHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCH-HHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 7777888999999999999999999999999999999987654 4455578899999999999998 9999999999999
Q ss_pred HHhcC-cHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcccccch
Q 000133 716 NLILD-SEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVAT 794 (2100)
Q Consensus 716 ~L~~~-~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~~ 794 (2100)
||+.+ ++....++..++++.|+.++.+++..++..|+++|.++..... .....++...|.+++++.++.+.+..+.
T Consensus 355 nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~--~~~~~~l~~~~~i~~L~~lL~~~d~~v~- 431 (528)
T 4b8j_A 355 NITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGS--HDQIKYLVSEGCIKPLCDLLICPDIRIV- 431 (528)
T ss_dssp HHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSC--HHHHHHHHHTTCHHHHHHGGGCSCHHHH-
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCC--HHHHHHHHHCCCHHHHHHHHcCCCHHHH-
Confidence 99965 4556677789999999999999999999999999999997632 2334445568999999999999888777
Q ss_pred HhHHHHHHHHHHcCCCC----CCCCcccceeeccCCCchhhhhhhccCChhHHHHHHHHHHHHhcCCc
Q 000133 795 SEALDALAILSRSGGAS----GHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQP 858 (2100)
Q Consensus 795 ~~al~~L~~L~~~~~~~----~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~a~~~L~~L~~~~~ 858 (2100)
..++.+|.++++..... +...+++...+...+.++.|...+.+.|+.+++.|..+|++||++..
T Consensus 432 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e~ 499 (528)
T 4b8j_A 432 TVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEE 499 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCcc
Confidence 99999999998654320 00124456667778889999999999999999999999999986543
No 17
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.97 E-value=4.1e-29 Score=331.26 Aligned_cols=410 Identities=16% Similarity=0.176 Sum_probs=353.1
Q ss_pred CCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCc-chhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhH
Q 000133 185 GGIDILVKLLTLGQSSTQAHVCFLLACMMEEDV-SVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDAR 263 (2100)
Q Consensus 185 g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~ 263 (2100)
..+|.+++.|.++++.++..|+..|.++..... .....+++.|+++.|+++|.++++.+++..|+++|.+++.++++.+
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 459999999999999999999999999976654 5678889999999999999987657899999999999999889999
Q ss_pred HHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHH
Q 000133 264 REIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMI 343 (2100)
Q Consensus 264 ~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~ 343 (2100)
..+++.|++|.|+.++.+++ ..+++.|+++|.|++.+.
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~---------~~v~~~a~~aL~~l~~~~--------------------------------- 191 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSS---------DDVREQAVWALGNVAGDS--------------------------------- 191 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSC---------HHHHHHHHHHHHHHHHTC---------------------------------
T ss_pred HHHHhCCcHHHHHHHhcCCC---------HHHHHHHHHHHHHHhCCC---------------------------------
Confidence 99999999999999998754 678888888888887521
Q ss_pred hccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhh-cCCCHHHHHHHHH
Q 000133 344 YDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLI-TMATNEVQEELVR 422 (2100)
Q Consensus 344 l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL-~~~~~~v~~~A~~ 422 (2100)
+..+..+.+.|+++.|+.++ .+.++.++..+++
T Consensus 192 ----------------------------------------------~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~ 225 (528)
T 4b8j_A 192 ----------------------------------------------PKCRDLVLANGALLPLLAQLNEHTKLSMLRNATW 225 (528)
T ss_dssp ----------------------------------------------HHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHH
T ss_pred ----------------------------------------------hhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHH
Confidence 11223445568899999999 5778999999999
Q ss_pred HHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHH
Q 000133 423 ALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKE 502 (2100)
Q Consensus 423 aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre 502 (2100)
+|.+|+...+..... ...++++.|+.++.++++.++..++++|++|+...++....+.+.|+++.|+.+|.++++.++.
T Consensus 226 ~L~~L~~~~~~~~~~-~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~ 304 (528)
T 4b8j_A 226 TLSNFCRGKPQPSFE-QTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLI 304 (528)
T ss_dssp HHHHHHCSSSCCCHH-HHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHcCCCCCcHH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHH
Confidence 999999986444333 3579999999999999999999999999999976666678889999999999999999999999
Q ss_pred HHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcC-ChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHH
Q 000133 503 DSASILRNLCNHSEDIRACVESADAVPALLWLLKNG-SANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVL 581 (2100)
Q Consensus 503 ~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~ 581 (2100)
.|+++|++|+..++.....+.+.|+++.|+.+|.++ ++.++..|+++|+|++.....
T Consensus 305 ~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~---------------------- 362 (528)
T 4b8j_A 305 PALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD---------------------- 362 (528)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHH----------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHH----------------------
Confidence 999999999998888888899999999999999998 899999999999999863211
Q ss_pred HHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHhcCchHHHHHhhcCCC
Q 000133 582 DALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFET-RKDLRESSIAVKTLWSVMKLLDVGS 660 (2100)
Q Consensus 582 ~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~-~~~~~~~~~~~g~v~~Lv~lL~~~~ 660 (2100)
....+...+++|.|+.+|.++++.++..|+++|++++.. .++....+...|++++|+.++.+.+
T Consensus 363 ---------------~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d 427 (528)
T 4b8j_A 363 ---------------QIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPD 427 (528)
T ss_dssp ---------------HHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred ---------------HHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCC
Confidence 011233457799999999999999999999999999987 5678888889999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCch----------hHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcC
Q 000133 661 ECILVEASRCLAAIFLSVRE----------NREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD 720 (2100)
Q Consensus 661 ~~v~~~aa~aL~~L~~~~~~----------~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~ 720 (2100)
+.++..++.+|.+++..... .....+.+.|+++.|..+..++++++++.|..+|.++...
T Consensus 428 ~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 428 IRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 99999999999999764322 1344578899999999999999999999999999998743
No 18
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.97 E-value=4.7e-29 Score=330.51 Aligned_cols=421 Identities=19% Similarity=0.206 Sum_probs=359.6
Q ss_pred cccHHHHHHhhcCCCHHHHHHHHHHHHHhhccC-ccchHHHHhCCcHHHHHHhhCCC-CHHHHHHHHHHHHHhccCCccc
Q 000133 399 SEAKRLLVGLITMATNEVQEELVRALLKLCNNE-GSLWRALQGREGIQLLISLLGLS-SEQQQECSVALLCLLSNENDDS 476 (2100)
Q Consensus 399 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~s~-~~~v~~~A~~aL~nLs~~~~~~ 476 (2100)
.+.++.++..|.++++.+|..|+.+|+++.... ......+.+.|++|.|+.+|+++ ++.++..|+++|++++.+.++.
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 457899999999999999999999999986643 34567788899999999999997 8999999999999999877788
Q ss_pred HHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcC
Q 000133 477 KWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHK 556 (2100)
Q Consensus 477 ~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~ 556 (2100)
+..+++.|+++.|+++|.++++++|+.|+|+|++|+..++..+..+...|++++|+.++.+.++.++..++++|++|+.+
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 245 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 245 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Confidence 89999999999999999999999999999999999998888999999999999999999998999999999999999875
Q ss_pred CCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Q 000133 557 SDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETR 636 (2100)
Q Consensus 557 ~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~ 636 (2100)
.++. .. .....++++.|+.++.++++.++..|+++|.+|+...
T Consensus 246 ~~~~-------------~~------------------------~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~ 288 (530)
T 1wa5_B 246 KKPQ-------------PD------------------------WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP 288 (530)
T ss_dssp SSSC-------------CC------------------------HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCC-------------Cc------------------------HHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence 4220 00 0112456999999999999999999999999999987
Q ss_pred hhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHH
Q 000133 637 KDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALAN 716 (2100)
Q Consensus 637 ~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~ 716 (2100)
++....+...|++|.|+.++.+.+..++..|+.+|++++.+.. .....+.+.|+++.|+.++.+++++++..|+++|++
T Consensus 289 ~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~ 367 (530)
T 1wa5_B 289 QEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND-LQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN 367 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCH-HHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 7888888899999999999999999999999999999987654 444447888999999999999999999999999999
Q ss_pred HhcC-cHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcccccchH
Q 000133 717 LILD-SEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATS 795 (2100)
Q Consensus 717 L~~~-~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~~~ 795 (2100)
|+.+ ++....++..++++.|+.++.+++..++..|+++|.++............++...|+++.++.++.+.+..+. .
T Consensus 368 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~-~ 446 (530)
T 1wa5_B 368 ITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII-E 446 (530)
T ss_dssp HTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHH-H
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHH-H
Confidence 9965 5566677789999999999999999999999999999998643211233445568999999999998877777 8
Q ss_pred hHHHHHHHHHHcCCCC----CCCCcccceeeccCCCchhhhhhhccCChhHHHHHHHHHHHHhcCCc
Q 000133 796 EALDALAILSRSGGAS----GHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQP 858 (2100)
Q Consensus 796 ~al~~L~~L~~~~~~~----~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~a~~~L~~L~~~~~ 858 (2100)
.++.+|.+++...+.. ....+++...+...+.++.|...+.+.++.+++.|..+|++++++..
T Consensus 447 ~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~ 513 (530)
T 1wa5_B 447 VTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEE 513 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence 9999999998754320 01123445566678889999999999999999999999999986543
No 19
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.97 E-value=1.5e-29 Score=326.60 Aligned_cols=417 Identities=20% Similarity=0.183 Sum_probs=317.4
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCC
Q 000133 95 GCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTST 174 (2100)
Q Consensus 95 g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~ 174 (2100)
..+|.|+.+|++++++.+..|+.+|.+++.+ +...+..+.+.|++|.|+++|++ .++.++..++++|+||+..+
T Consensus 2 ~~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~---~~~~~~~i~~~g~i~~Lv~lL~s---~~~~~~~~A~~aL~nLa~~~ 75 (457)
T 1xm9_A 2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQ---DESAKQQVYQLGGICKLVDLLRS---PNQNVQQAAAGALRNLVFRS 75 (457)
T ss_dssp CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSS---CSSHHHHHHHTTHHHHHHHHTTS---SCHHHHHHHHHHHHHHHSSC
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHHHHcC---ChHHHHHHHHcCCHHHHHHHHcC---CCHHHHHHHHHHHHHHhcCC
Confidence 3589999999999999999999999999972 33335578899999999999986 34568899999999999887
Q ss_pred hhhHHHHHhcCCHHHHHHhHc-cCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhc--------CC------
Q 000133 175 EGFWAATVQAGGIDILVKLLT-LGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLG--------SG------ 239 (2100)
Q Consensus 175 ~~~~~~i~~~g~v~~Lv~lL~-s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~--------~~------ 239 (2100)
+.++..++++|+||.|+++|+ ++++++++.++++|++++.. +..+..+++ |++|.|+++|. ++
T Consensus 76 ~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e 153 (457)
T 1xm9_A 76 TTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSRE 153 (457)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------
T ss_pred HHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcc
Confidence 889999999999999999999 88999999999999999987 558888888 99999999993 22
Q ss_pred -CCHHHHHHHHHHHHHhhcCChHhHHHHHhC-CChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhc
Q 000133 240 -NEASVRAEAAGALKSLSDHCKDARREIAGS-NGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSL 317 (2100)
Q Consensus 240 -~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~-g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l 317 (2100)
.+.++...|+++|+||+.+ ++++..+++. |++++|+.++.+.. ..+..+..++++++++|+|++......+...
T Consensus 154 ~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~---~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~ 229 (457)
T 1xm9_A 154 VVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCV---AASRCDDKSVENCMCVLHNLSYRLDAEVPTR 229 (457)
T ss_dssp CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHH---HHTCTTCTTHHHHHHHHHHHTTTHHHHSCCH
T ss_pred cccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhc---cccCCchHHHHHHHHHHHhcccchhccCcch
Confidence 2456788999999999985 8999999998 99999999996420 0111234578899999999986321110000
Q ss_pred cccc-cCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHH---hCCCccc
Q 000133 318 GQSL-ESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASL---YGNPLLS 393 (2100)
Q Consensus 318 ~~~~-~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L---~~~~~~~ 393 (2100)
...+ ..++......+..|++.. .... ++... ..+ .+ ..+++..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~-~~~~~-~~~-~~~~~~~~~~~~ 276 (457)
T 1xm9_A 230 YRQLEYNARNAYTEKSSTGCFSN------------------------------KSDK-MMNNN-YDC-PLPEEETNPKGS 276 (457)
T ss_dssp HHHHHHTC-------------------------------------------------------------CCCCCSSCCGG
T ss_pred hhhcccccccccccccccchhhc------------------------------cchh-hhhcc-ccC-CccccccCchHH
Confidence 0000 000000000000000000 0000 00000 000 00 1234455
Q ss_pred hhhhccccHHHHHHhhc-CCCHHHHHHHHHHHHHhhccCccc-----hHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHH
Q 000133 394 IKLENSEAKRLLVGLIT-MATNEVQEELVRALLKLCNNEGSL-----WRALQGREGIQLLISLLGLSSEQQQECSVALLC 467 (2100)
Q Consensus 394 ~~l~~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~~L~~~~~~~-----~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~ 467 (2100)
..+.+.++++.|+.+|. +.++.+++.|+++|.||+.++... +..+.+.|++|.|+++|.+++.+++..|+++|+
T Consensus 277 ~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~ 356 (457)
T 1xm9_A 277 GWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLS 356 (457)
T ss_dssp GGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHH
Confidence 67788899999999997 457999999999999999876542 234457899999999999999999999999999
Q ss_pred HhccCCcccHHHHHhcCChHHHHHhccCCC------HHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcC-Ch
Q 000133 468 LLSNENDDSKWAITAAGGIPPLVQILESGS------AKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNG-SA 540 (2100)
Q Consensus 468 nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~------~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~ 540 (2100)
||+. +++.+..+. .|++|+|+++|..++ +++...++++|.|+...+++....+.+.|++++|++++.++ ++
T Consensus 357 nls~-~~~~~~~i~-~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~ 434 (457)
T 1xm9_A 357 NMSR-HPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASP 434 (457)
T ss_dssp HHHT-SGGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCH
T ss_pred HHhc-CHHHHHHHH-HhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcH
Confidence 9996 566665554 579999999998763 46888999999999988888999999999999999999999 99
Q ss_pred hHHHHHHHHHHHHhcCCC
Q 000133 541 NGKEIAAKTLNHLIHKSD 558 (2100)
Q Consensus 541 ~~~~~Aa~aL~~L~~~~~ 558 (2100)
++++.|+++|.+++.+.+
T Consensus 435 ~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 435 KAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHHHHHTTSSSTT
T ss_pred HHHHHHHHHHHHHHcchh
Confidence 999999999999988664
No 20
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.97 E-value=7.2e-30 Score=322.38 Aligned_cols=391 Identities=16% Similarity=0.140 Sum_probs=295.4
Q ss_pred HHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCC-----------CHHHHHHHHHHHHHh
Q 000133 187 IDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGN-----------EASVRAEAAGALKSL 255 (2100)
Q Consensus 187 v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-----------~~~v~~~Aa~aL~~L 255 (2100)
++.|+..+.+.+++ ...+.|..+.... +.|..+++.|++|.|+++|..+. +.+++..|+|+|.|+
T Consensus 34 ~~~l~~~~~~~~~~---~~~~~ll~~~~~~-~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni 109 (458)
T 3nmz_A 34 VYSLLSMLGTHDKD---DMSRTLLAMSSSQ-DSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNI 109 (458)
T ss_dssp -----------CCH---HHHHHHHHHHSST-THHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHH---HHHHHHHHHHcCC-cHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHH
Confidence 66777777777666 2566665666544 47788999999999999999743 269999999999999
Q ss_pred hcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhh
Q 000133 256 SDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLG 335 (2100)
Q Consensus 256 s~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~g 335 (2100)
+.+.++......+.|.++. +..+. .+....+.-+.... ++.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~-l~~~~----------------~~~~~~~~~~~~~~-----------~~~~---------- 151 (458)
T 3nmz_A 110 IHSQPDDKRGRREIRVLHL-LEQIR----------------AYCETCWEWQEAHE-----------PGMD---------- 151 (458)
T ss_dssp HHHSCSCHHHHHHHHHHHH-HHHHH----------------HHHHHHHHHHTTTS-----------SSSC----------
T ss_pred HccCcchhHHHHHHHHHHH-HHHhh----------------hhhHHHHHHHHhhc-----------cccc----------
Confidence 9988887777666655544 22221 11111111011000 0000
Q ss_pred hhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcC----
Q 000133 336 ALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITM---- 411 (2100)
Q Consensus 336 al~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~---- 411 (2100)
+.+ .+ + ..+.+..+-.|+.+|.+++.++++|+.+.+.|++++|+.++..
T Consensus 152 -------------~~~---~~--~---------~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~ 204 (458)
T 3nmz_A 152 -------------QDK---NP--M---------PAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEM 204 (458)
T ss_dssp -------------CCS---CC-------------CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred -------------ccc---CC--c---------cchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcc
Confidence 000 00 0 0000112447899999998889999999999999999999952
Q ss_pred -------CCHHHHHHHHHHHHHhhccCccchHHHHhCCc-HHHHHHhhCCCCHHHHHHHHHHHHHhccC-CcccHHHHHh
Q 000133 412 -------ATNEVQEELVRALLKLCNNEGSLWRALQGREG-IQLLISLLGLSSEQQQECSVALLCLLSNE-NDDSKWAITA 482 (2100)
Q Consensus 412 -------~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~-i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~-~~~~~~~i~~ 482 (2100)
.++.+++.|+++|.||+.+++.++..+...+| ||.|+.+|+++++++++.|+++|+||+.. +++++..+.+
T Consensus 205 ~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~ 284 (458)
T 3nmz_A 205 YGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLRE 284 (458)
T ss_dssp STTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHH
T ss_pred cccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 24678999999999999987777777765555 99999999999999999999999999964 4678999999
Q ss_pred cCChHHHHHhc-cCCCHHHHHHHHHHHHHHhcCChhhHHHHH-hCCcHHHHHHHhhcCCh----hHHHHHHHHHHHHhcC
Q 000133 483 AGGIPPLVQIL-ESGSAKAKEDSASILRNLCNHSEDIRACVE-SADAVPALLWLLKNGSA----NGKEIAAKTLNHLIHK 556 (2100)
Q Consensus 483 ~g~i~~Lv~lL-~~~~~~vre~A~~aL~~L~~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~----~~~~~Aa~aL~~L~~~ 556 (2100)
.|+||+|+++| .++++.+++.|+.+|+||+.++++++..+. ..|++|+|+++|.++++ .+++.|+++|+||+.+
T Consensus 285 ~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~ 364 (458)
T 3nmz_A 285 VGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 364 (458)
T ss_dssp TTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhc
Confidence 99999999974 567899999999999999986678888887 79999999999998655 3899999999999741
Q ss_pred CCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Q 000133 557 SDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETR 636 (2100)
Q Consensus 557 ~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~ 636 (2100)
+...++ .+..+.+.|++|.|+.+|++++..+++.|+++|+|++..+
T Consensus 365 ---------------------------------~a~~~~-~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~ 410 (458)
T 3nmz_A 365 ---------------------------------IATNED-HRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN 410 (458)
T ss_dssp ---------------------------------HTTCHH-HHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSC
T ss_pred ---------------------------------ccCCHH-HHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCC
Confidence 000011 2335567889999999999999999999999999999877
Q ss_pred hhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCch
Q 000133 637 KDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRE 680 (2100)
Q Consensus 637 ~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~ 680 (2100)
++.+..+.+.|++|+|+.++.+++..+++.|+.+|.||+.+.+.
T Consensus 411 ~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ 454 (458)
T 3nmz_A 411 PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 454 (458)
T ss_dssp HHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSC
T ss_pred HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHh
Confidence 89999999999999999999999999999999999999887653
No 21
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.97 E-value=1.5e-28 Score=325.76 Aligned_cols=413 Identities=14% Similarity=0.157 Sum_probs=351.8
Q ss_pred hcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcC-cchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChH
Q 000133 183 QAGGIDILVKLLTLGQSSTQAHVCFLLACMMEED-VSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKD 261 (2100)
Q Consensus 183 ~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~ 261 (2100)
..+.++.++..|+++++.++..|+..|.++.... ......+++.|+++.|+++|.++.+.+++..|+++|.+++.++++
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 3477999999999999999999999999987543 345677888999999999999875578999999999999998888
Q ss_pred hHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHH
Q 000133 262 ARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASAL 341 (2100)
Q Consensus 262 ~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll 341 (2100)
.+..+++.|+++.|+.++.+++ ..+++.|+++|.|++...
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~~---------~~vr~~A~~aL~~l~~~~------------------------------- 204 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTGS---------VEVKEQAIWALGNVAGDS------------------------------- 204 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCC---------HHHHHHHHHHHHHHHTTC-------------------------------
T ss_pred HHHHHHHCCCHHHHHHHHcCCC---------HHHHHHHHHHHHHHhCCC-------------------------------
Confidence 9999999999999999997653 678888888888887531
Q ss_pred HHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHH
Q 000133 342 MIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELV 421 (2100)
Q Consensus 342 ~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~ 421 (2100)
+..+..+...|+++.|+.++.+.++.++..|+
T Consensus 205 ------------------------------------------------~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~ 236 (530)
T 1wa5_B 205 ------------------------------------------------TDYRDYVLQCNAMEPILGLFNSNKPSLIRTAT 236 (530)
T ss_dssp ------------------------------------------------HHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHH
T ss_pred ------------------------------------------------ccchHHHHHcCcHHHHHHHhccCCHHHHHHHH
Confidence 11223444568899999999999999999999
Q ss_pred HHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHH
Q 000133 422 RALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAK 501 (2100)
Q Consensus 422 ~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vr 501 (2100)
++|.+|+.+...........++++.|+.++.++++.++..++++|++|+...++....+.+.|+++.|+.+|.++++.++
T Consensus 237 ~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~ 316 (530)
T 1wa5_B 237 WTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQ 316 (530)
T ss_dssp HHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred HHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhH
Confidence 99999998763333344557999999999999999999999999999997667778888999999999999999999999
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHH
Q 000133 502 EDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVL 581 (2100)
Q Consensus 502 e~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~ 581 (2100)
..|+++|++++..++.....+.+.|+++.|+.+|+++++.++..|+++|++++..... .
T Consensus 317 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~----------------~----- 375 (530)
T 1wa5_B 317 TPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE----------------Q----- 375 (530)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH----------------H-----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH----------------H-----
Confidence 9999999999988788888888999999999999999999999999999999763211 0
Q ss_pred HHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-h--hhHHHHHhcCchHHHHHhhcC
Q 000133 582 DALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETR-K--DLRESSIAVKTLWSVMKLLDV 658 (2100)
Q Consensus 582 ~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~-~--~~~~~~~~~g~v~~Lv~lL~~ 658 (2100)
++ .+.+.+++|.|+.+|.++++.++..|+++|++++... + +....+...|++++|+.++.+
T Consensus 376 ---------------~~-~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~ 439 (530)
T 1wa5_B 376 ---------------IQ-AVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEI 439 (530)
T ss_dssp ---------------HH-HHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTT
T ss_pred ---------------HH-HHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhC
Confidence 11 2234577999999999999999999999999999753 3 677788899999999999999
Q ss_pred CCHHHHHHHHHHHHHHhcCCch----------hHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcC
Q 000133 659 GSECILVEASRCLAAIFLSVRE----------NREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD 720 (2100)
Q Consensus 659 ~~~~v~~~aa~aL~~L~~~~~~----------~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~ 720 (2100)
.++.++..++.+|.+++...+. .....+.+.|+++.|..++.++++++++.|..+|.++...
T Consensus 440 ~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 440 ADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGE 511 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred CCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence 9999999999999999764321 1234478899999999999999999999999999999854
No 22
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.97 E-value=6.1e-28 Score=313.48 Aligned_cols=410 Identities=16% Similarity=0.153 Sum_probs=343.6
Q ss_pred CHHHHHHhHccCCHHHHHHHHHHHHHHhh-cCcchhhHHhhh-chHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhH
Q 000133 186 GIDILVKLLTLGQSSTQAHVCFLLACMME-EDVSVCSRVLAA-DATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDAR 263 (2100)
Q Consensus 186 ~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~-~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~ 263 (2100)
.++.+++.++++++.++..|+..|.++.. ........+++. |.++.|+++|+++.+.+++..|+++|.+++.++++..
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 48899999999999999999999998865 222234556666 9999999999987567899999999999999888888
Q ss_pred HHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHH
Q 000133 264 REIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMI 343 (2100)
Q Consensus 264 ~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~ 343 (2100)
..+++.|++|.|+.++.+++ ..+++.++++|.|++...
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~---------~~vr~~a~~~L~~l~~~~--------------------------------- 138 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEF---------EDVQEQAVWALGNIAGDS--------------------------------- 138 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSC---------HHHHHHHHHHHHHHHTTC---------------------------------
T ss_pred HHHHhCCCHHHHHHHHcCCC---------HHHHHHHHHHHHHHccCC---------------------------------
Confidence 88899999999999997654 677888888888777531
Q ss_pred hccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcC-CCHHHHHHHHH
Q 000133 344 YDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITM-ATNEVQEELVR 422 (2100)
Q Consensus 344 l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~-~~~~v~~~A~~ 422 (2100)
+..+..+.+.|+++.|+.++.+ .+..++..|++
T Consensus 139 ----------------------------------------------~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~ 172 (450)
T 2jdq_A 139 ----------------------------------------------TMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVW 172 (450)
T ss_dssp ----------------------------------------------HHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHH
T ss_pred ----------------------------------------------HHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHH
Confidence 1122334456889999999985 78999999999
Q ss_pred HHHHhhccC-ccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHH
Q 000133 423 ALLKLCNNE-GSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAK 501 (2100)
Q Consensus 423 aL~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vr 501 (2100)
+|.+++.+. +.....+. .++++.|+.+++++++.++..++++|.+++...++....+...|+++.|+++|.+++++++
T Consensus 173 ~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~ 251 (450)
T 2jdq_A 173 ALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVV 251 (450)
T ss_dssp HHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHH
T ss_pred HHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHH
Confidence 999999765 33333333 6899999999999999999999999999997667778888899999999999999999999
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHH
Q 000133 502 EDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVL 581 (2100)
Q Consensus 502 e~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~ 581 (2100)
+.|+++|++++..++..+..+.+.|+++.|+.+++++++.++..|+++|++++...+. .
T Consensus 252 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~----------------~----- 310 (450)
T 2jdq_A 252 SPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRA----------------Q----- 310 (450)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHH----------------H-----
T ss_pred HHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH----------------H-----
Confidence 9999999999998777777888899999999999999999999999999999763211 0
Q ss_pred HHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHhcCchHHHHHhhcCCC
Q 000133 582 DALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFET-RKDLRESSIAVKTLWSVMKLLDVGS 660 (2100)
Q Consensus 582 ~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~-~~~~~~~~~~~g~v~~Lv~lL~~~~ 660 (2100)
.+ .+.+.+++|.|+.+|.++++.+|+.|+++|++++.+ +++....+...|++|.|+.++.+.+
T Consensus 311 ---------------~~-~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 374 (450)
T 2jdq_A 311 ---------------IQ-TVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMD 374 (450)
T ss_dssp ---------------HH-HHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSC
T ss_pred ---------------HH-HHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCC
Confidence 11 233457799999999999999999999999999975 4667777888999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCchh----------HHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCc
Q 000133 661 ECILVEASRCLAAIFLSVREN----------REVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDS 721 (2100)
Q Consensus 661 ~~v~~~aa~aL~~L~~~~~~~----------~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~ 721 (2100)
..++..++.+|.+++...+.. ....+.+.|+++.|..++.+++.++++.|..+|.++..+.
T Consensus 375 ~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 445 (450)
T 2jdq_A 375 SKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTE 445 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence 999999999999998643221 1234778899999999999999999999999999998543
No 23
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.96 E-value=1.7e-28 Score=316.65 Aligned_cols=357 Identities=17% Similarity=0.158 Sum_probs=302.0
Q ss_pred HHHHHhhcCCCCChHHHHHHHHHHHHHh-CCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHH
Q 000133 360 EQTLVNQFKPRLPFLVQERTIEALASLY-GNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRAL 438 (2100)
Q Consensus 360 ~~~Lv~lL~~~~~~~vq~~aa~aL~~L~-~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i 438 (2100)
++.|+.+|++++++ +|..|+.+|.+++ +++..+..+.+.|+++.|+.+|+++++.+|..|+++|+||+.++++++..+
T Consensus 4 l~~lv~~L~s~~~~-~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 4 IPKAVQYLSSQDEK-YQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp HHHHHHHHHSSCTH-HHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHHCCCCHH-HHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 56678888877654 7999999999995 556677789999999999999999999999999999999999888999999
Q ss_pred HhCCcHHHHHHhhC-CCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhc--------cCC--------CHHHH
Q 000133 439 QGREGIQLLISLLG-LSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQIL--------ESG--------SAKAK 501 (2100)
Q Consensus 439 ~~~g~i~~Lv~lL~-s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL--------~~~--------~~~vr 501 (2100)
++.|+||.|+++|+ ++++++++.|+++|+||+.+ ++.+..+.+ |++|+|+++| +++ ++.++
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 99999999999999 88999999999999999974 888998999 9999999999 333 34556
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhC-CcHHHHHHHhhc------CChhHHHHHHHHHHHHhcCC-----------------
Q 000133 502 EDSASILRNLCNHSEDIRACVESA-DAVPALLWLLKN------GSANGKEIAAKTLNHLIHKS----------------- 557 (2100)
Q Consensus 502 e~A~~aL~~L~~~~~~~~~~i~~~-g~i~~Lv~lL~~------~~~~~~~~Aa~aL~~L~~~~----------------- 557 (2100)
+.|+|+|+||+.+ ++++..+.+. |++++|+.++++ .+.++++.+..+|++|++..
T Consensus 161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 6999999999986 8899999987 999999999986 35678899999999997410
Q ss_pred -----------------------------------------CCCcHHHHHHHhhcC-CcchHHHHHHHHHHHHhccCc-h
Q 000133 558 -----------------------------------------DTATISQLTALLTSD-LPESKVYVLDALKSMLSVVSF-S 594 (2100)
Q Consensus 558 -----------------------------------------~~~~i~~L~~lL~~~-~~~~~~~a~~aL~~l~~~~~~-~ 594 (2100)
+.++++.|+.+|.+. ++++++.+..+|++++.-... .
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~ 319 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence 124577888888754 578999999999999875433 2
Q ss_pred hHH-HHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCC------HHHHHHH
Q 000133 595 DIL-REGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGS------ECILVEA 667 (2100)
Q Consensus 595 ~~~-~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~------~~v~~~a 667 (2100)
..+ +..+.+.+|+|.|+++|.++++++++.|+|+|.|++.+ +..+.. +..|++|+|+++|.+.+ ++++..+
T Consensus 320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~-~~~~~~-i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~ 397 (457)
T 1xm9_A 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH-PLLHRV-MGNQVFPEVTRLLTSHTGNTSNSEDILSSA 397 (457)
T ss_dssp HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-GGGHHH-HHHHTHHHHHHTTTSCCSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC-HHHHHH-HHHhhhHHHHHhccCCCCCCCCcHHHHHHH
Confidence 223 55666789999999999999999999999999999986 455544 45589999999997763 4688899
Q ss_pred HHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCC-CHHHHHHHHHHHHHHhcCcHH
Q 000133 668 SRCLAAIFLSVRENREVAAVARDALSPLVVLAGSP-VLEVAEQATCALANLILDSEV 723 (2100)
Q Consensus 668 a~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~-~~evr~~aa~aL~~L~~~~~~ 723 (2100)
+.+|.++..+.+ .+...+.+.|+++.|++++.++ ++++++.|++.|.++..+.+.
T Consensus 398 l~~l~ni~~~~~-~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l 453 (457)
T 1xm9_A 398 CYTVRNLMASQP-QLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKEL 453 (457)
T ss_dssp HHHHHHHHTTCT-HHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTC
T ss_pred HHHHHHHHhcCH-HHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchhh
Confidence 999999987665 4555588999999999999999 999999999999999866553
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.96 E-value=3.9e-27 Score=305.83 Aligned_cols=401 Identities=15% Similarity=0.137 Sum_probs=345.0
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhc-cCccchHHHHhC-CcHHHHHHhhCCC-CHHHHHHHHHHHHHhccCCcccH
Q 000133 401 AKRLLVGLITMATNEVQEELVRALLKLCN-NEGSLWRALQGR-EGIQLLISLLGLS-SEQQQECSVALLCLLSNENDDSK 477 (2100)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~-~~~~~~~~i~~~-g~i~~Lv~lL~s~-~~~v~~~A~~aL~nLs~~~~~~~ 477 (2100)
.++.+++.++++++.+|..|+.+|+.+.. ......+.+.+. |+++.|+++++++ ++.++..|+++|++++.+.++..
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 37789999999999999999999999764 222333456666 8999999999998 89999999999999998777888
Q ss_pred HHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhc-CChhHHHHHHHHHHHHhcC
Q 000133 478 WAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKN-GSANGKEIAAKTLNHLIHK 556 (2100)
Q Consensus 478 ~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~Aa~aL~~L~~~ 556 (2100)
..+.+.|++|.|+++|.++++++|+.|+++|++++..+++.+..+.+.|+++.|+.++++ .++.++..++++|++++..
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 888999999999999999999999999999999999888899999999999999999996 6889999999999999976
Q ss_pred CC--------CCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHH
Q 000133 557 SD--------TATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASA 628 (2100)
Q Consensus 557 ~~--------~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~a 628 (2100)
.+ .+.+|.|+.++.+++++++..+..+|++++...+ + ....+...++++.|+.+|.++++.++..|+++
T Consensus 181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~--~-~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~ 257 (450)
T 2jdq_A 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPN--D-KIQAVIDAGVCRRLVELLMHNDYKVVSPALRA 257 (450)
T ss_dssp SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSH--H-HHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCc--H-HHHHHHHcCcHHHHHHHHCCCchhHHHHHHHH
Confidence 42 3689999999999999999999999998875432 2 22344567889999999999999999999999
Q ss_pred HHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHH
Q 000133 629 LAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAE 708 (2100)
Q Consensus 629 L~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~ 708 (2100)
|++++.+.++..+.+...|+++.|+.++.++++.++..|+++|++++.+.. .....+.+.++++.|++++.++++++|.
T Consensus 258 L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~~l~~~~~~v~~ 336 (450)
T 2jdq_A 258 VGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNR-AQIQTVIDANIFPALISILQTAEFRTRK 336 (450)
T ss_dssp HHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHHHHHHSCHHHHH
T ss_pred HHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHhcCCHHHHH
Confidence 999999877777788889999999999999999999999999999987654 3344477889999999999999999999
Q ss_pred HHHHHHHHHhc--CcHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCccc--------hhHhhhhhccCcH
Q 000133 709 QATCALANLIL--DSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKID--------YTITDCVNRAGTV 778 (2100)
Q Consensus 709 ~aa~aL~~L~~--~~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~~~--------~~~~~~~~~~g~l 778 (2100)
.|+++|++++. +++....++..++++.|+.++++++..++..|.++|.++....+.. ..+...+...|++
T Consensus 337 ~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 416 (450)
T 2jdq_A 337 EAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGL 416 (450)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcH
Confidence 99999999985 4566677778899999999999999999999999999999754321 2344555668889
Q ss_pred HHHHHhhhhcccccchHhHHHHHHHHHH
Q 000133 779 LALVSFLESASGSVATSEALDALAILSR 806 (2100)
Q Consensus 779 ~~li~~l~s~~~~v~~~~al~~L~~L~~ 806 (2100)
..+..+..+.+..+. +.++.+|.++..
T Consensus 417 ~~l~~l~~~~~~~v~-~~a~~~l~~~~~ 443 (450)
T 2jdq_A 417 DKIEFLQSHENQEIY-QKAFDLIEHYFG 443 (450)
T ss_dssp HHHHHHHCHHHHHHH-HHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHH-HHHHHHHHHHCC
Confidence 988888877777777 999999999863
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.93 E-value=2e-25 Score=274.33 Aligned_cols=269 Identities=20% Similarity=0.155 Sum_probs=233.5
Q ss_pred HHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCC-----------CCHHHHHHHHHHHHHhccCCcccHHHHHhc
Q 000133 415 EVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGL-----------SSEQQQECSVALLCLLSNENDDSKWAITAA 483 (2100)
Q Consensus 415 ~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s-----------~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~ 483 (2100)
..+..|+++|.|++.+ +++++.|.+.|++++|+.+|.. .++.+|++|+++|.||+.++++++..+...
T Consensus 47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 4456899999999998 7899999999999999999952 246799999999999998666678878665
Q ss_pred CC-hHHHHHhccCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHhCCcHHHHHHHh-hcCChhHHHHHHHHHHHHhcCCCCC
Q 000133 484 GG-IPPLVQILESGSAKAKEDSASILRNLCNH-SEDIRACVESADAVPALLWLL-KNGSANGKEIAAKTLNHLIHKSDTA 560 (2100)
Q Consensus 484 g~-i~~Lv~lL~~~~~~vre~A~~aL~~L~~~-~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~Aa~aL~~L~~~~~~~ 560 (2100)
+| ||.|+++|.++++++++.|+|+|.||+.. ++++|..+.+.|++|+|+++| +++++.+++.|+.+|+||+.+.+.
T Consensus 126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~- 204 (354)
T 3nmw_A 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE- 204 (354)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHH-
T ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChh-
Confidence 55 99999999999999999999999999984 578999999999999999975 567889999999999999873321
Q ss_pred cHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhh-ccchHHHHHHHhcCCCH----HHHHHHHHHHHHHhc-
Q 000133 561 TISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSA-ANDAVETMIKILSSTKE----ETQAKSASALAGIFE- 634 (2100)
Q Consensus 561 ~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~-~~~~i~~Lv~lL~s~~~----~~~~~Aa~aL~~L~~- 634 (2100)
.+..+. ..|++|.|+++|.++++ ++++.|+++|.||+.
T Consensus 205 ------------------------------------nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~ 248 (354)
T 3nmw_A 205 ------------------------------------NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 248 (354)
T ss_dssp ------------------------------------HHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHH
T ss_pred ------------------------------------hhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhh
Confidence 111233 57899999999987765 599999999999997
Q ss_pred --CChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHH
Q 000133 635 --TRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATC 712 (2100)
Q Consensus 635 --~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~ 712 (2100)
.+++.+..+.+.|++|+|+.+|++++..+++.|+++|.|++.+.+ .++..+.+.|++++|+++++++++++++.|++
T Consensus 249 ~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~-~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~ 327 (354)
T 3nmw_A 249 IATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNP-KDQEALWDMGAVSMLKNLIHSKHKMIAMGSAA 327 (354)
T ss_dssp HTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH-HHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHH
T ss_pred ccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCH-HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHH
Confidence 568899999999999999999999999999999999999976554 56666899999999999999999999999999
Q ss_pred HHHHHhcCcH
Q 000133 713 ALANLILDSE 722 (2100)
Q Consensus 713 aL~~L~~~~~ 722 (2100)
||.||+.+.+
T Consensus 328 aL~nL~~~~~ 337 (354)
T 3nmw_A 328 ALRNLMANRP 337 (354)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHcCCH
Confidence 9999996644
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.93 E-value=3.6e-25 Score=272.09 Aligned_cols=273 Identities=16% Similarity=0.131 Sum_probs=237.7
Q ss_pred HHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcC-----------CCHHHHHHHHHHHHHhhccCccchHHHHhCCc
Q 000133 375 VQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITM-----------ATNEVQEELVRALLKLCNNEGSLWRALQGREG 443 (2100)
Q Consensus 375 vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~-----------~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~ 443 (2100)
.+..|+.+|.+++.++++|+.+.+.|+++.|+.+|.+ .++.+|+.|+++|.||+.++..++..+...+|
T Consensus 48 ~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~G 127 (354)
T 3nmw_A 48 QICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 127 (354)
T ss_dssp THHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCC
Confidence 4567899999998889999999999999999999952 24679999999999999987777777765555
Q ss_pred -HHHHHHhhCCCCHHHHHHHHHHHHHhccC-CcccHHHHHhcCChHHHHHhc-cCCCHHHHHHHHHHHHHHhcCChhhHH
Q 000133 444 -IQLLISLLGLSSEQQQECSVALLCLLSNE-NDDSKWAITAAGGIPPLVQIL-ESGSAKAKEDSASILRNLCNHSEDIRA 520 (2100)
Q Consensus 444 -i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~-~~~~~~~i~~~g~i~~Lv~lL-~~~~~~vre~A~~aL~~L~~~~~~~~~ 520 (2100)
||.|+.+|+++++++++.|+++|+||+.. +++++..+.+.|+||+|+++| +++++++++.|+++|+||+.++++++.
T Consensus 128 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~ 207 (354)
T 3nmw_A 128 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA 207 (354)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhH
Confidence 99999999999999999999999999964 467899999999999999974 667899999999999999987778888
Q ss_pred HHH-hCCcHHHHHHHhhcCCh----hHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchh
Q 000133 521 CVE-SADAVPALLWLLKNGSA----NGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSD 595 (2100)
Q Consensus 521 ~i~-~~g~i~~Lv~lL~~~~~----~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~ 595 (2100)
.+. ..|++|+|+++|+++++ .+++.|+++|+||+.+ +...++
T Consensus 208 ~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~---------------------------------~a~~~~ 254 (354)
T 3nmw_A 208 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL---------------------------------IATNED 254 (354)
T ss_dssp HHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHH---------------------------------HTTCHH
T ss_pred HHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhh---------------------------------ccCCHH
Confidence 887 79999999999998655 4889999999999741 000111
Q ss_pred HHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 000133 596 ILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIF 675 (2100)
Q Consensus 596 ~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~ 675 (2100)
.+..+.+.|++|.|+.+|++++..+++.|+++|+||+..+++.+..+.+.|++|+|+.++++++..+++.|+.+|.+|+
T Consensus 255 -~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~ 333 (354)
T 3nmw_A 255 -HRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 333 (354)
T ss_dssp -HHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 2345667889999999999999999999999999999877899999999999999999999999999999999999999
Q ss_pred cCCchh
Q 000133 676 LSVREN 681 (2100)
Q Consensus 676 ~~~~~~ 681 (2100)
.+.++.
T Consensus 334 ~~~~~~ 339 (354)
T 3nmw_A 334 ANRPAK 339 (354)
T ss_dssp TTCCGG
T ss_pred cCCHHH
Confidence 887653
No 27
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=9.3e-22 Score=254.66 Aligned_cols=446 Identities=14% Similarity=0.116 Sum_probs=320.6
Q ss_pred HHHHHHHHHHHHHhhcCcchhhH-HhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHh
Q 000133 200 STQAHVCFLLACMMEEDVSVCSR-VLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINA 278 (2100)
Q Consensus 200 ~v~~~a~~~L~~L~~~~~~~~~~-i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~l 278 (2100)
+....+..+|..+---.++.+.. +...|..+.+.+.+.+.++..+...+...|...+. +..+|.+| ..+.++.|...
T Consensus 227 ~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi-~~~cR~~I-~~~~~~~L~~~ 304 (778)
T 3opb_A 227 DPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACI-DETMRTYI-TENYLQLLERS 304 (778)
T ss_dssp CHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCC-SHHHHHHH-HHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhC-CcHHHHHH-HHhHHHHHHHH
Confidence 33445555555454444444444 46778889898888776665555555555555554 67777777 44566888777
Q ss_pred hcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchh
Q 000133 279 TIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLI 358 (2100)
Q Consensus 279 l~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~ 358 (2100)
+.+ ..++..|+-+|+.+..
T Consensus 305 l~~-----------~~ir~lAavvL~KL~~-------------------------------------------------- 323 (778)
T 3opb_A 305 LNV-----------EDVQIYSALVLVKTWS-------------------------------------------------- 323 (778)
T ss_dssp TTS-----------GGGHHHHHHHHHHHTG--------------------------------------------------
T ss_pred hcc-----------HHHHHHHHHHHHHHhc--------------------------------------------------
Confidence 743 1233444444443221
Q ss_pred hHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCcc-chhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHH
Q 000133 359 VEQTLVNQFKPRLPFLVQERTIEALASLYGNPLL-SIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRA 437 (2100)
Q Consensus 359 i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~-~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~ 437 (2100)
.+.. ...+. ...+.+...+..++.+.++.|++.|+.++.. ++.++.
T Consensus 324 ------------------------------~~~~~~~si~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~-~~VKe~ 370 (778)
T 3opb_A 324 ------------------------------FTKLTCINLK--QLSEIFINAISRRIVPKVEMSVEALAYLSLK-ASVKIM 370 (778)
T ss_dssp ------------------------------GGTCTTCCHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-SHHHHH
T ss_pred ------------------------------CCCCCcCcHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-HHHHHH
Confidence 0000 00010 1234456666666666699999999999987 566777
Q ss_pred HHhCCc-HHHHHHhhCC-CCHHHHHHHHHHHHHhccCCcc--------------------------------------cH
Q 000133 438 LQGREG-IQLLISLLGL-SSEQQQECSVALLCLLSNENDD--------------------------------------SK 477 (2100)
Q Consensus 438 i~~~g~-i~~Lv~lL~s-~~~~v~~~A~~aL~nLs~~~~~--------------------------------------~~ 477 (2100)
+++..+ ++.|+.++++ .+..+.+.++.+|.||+...+. ++
T Consensus 371 L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~ 450 (778)
T 3opb_A 371 IRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNE 450 (778)
T ss_dssp HHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHH
Confidence 766555 9999999995 7788999999999999873331 35
Q ss_pred HHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChh---HHHHHHHHHHHHh
Q 000133 478 WAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSAN---GKEIAAKTLNHLI 554 (2100)
Q Consensus 478 ~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~---~~~~Aa~aL~~L~ 554 (2100)
..+.++|++|.|+.++.++++.+|+.|+++|.||+.. +++|..++++|++++|+.++.+++.. ++..|+.+|.++.
T Consensus 451 ~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLl 529 (778)
T 3opb_A 451 KYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRML 529 (778)
T ss_dssp HHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHH
Confidence 6778999999999999999999999999999999974 89999999999999999999998654 8999999999998
Q ss_pred cCCC----------CCcHHHHHHHhhc--CCcc------------hHHHHHHHHHHHHhccCch-hHHHHhhhc-cchHH
Q 000133 555 HKSD----------TATISQLTALLTS--DLPE------------SKVYVLDALKSMLSVVSFS-DILREGSAA-NDAVE 608 (2100)
Q Consensus 555 ~~~~----------~~~i~~L~~lL~~--~~~~------------~~~~a~~aL~~l~~~~~~~-~~~~~~i~~-~~~i~ 608 (2100)
...+ .+++++|+.+|.. +... .+..|+.||.+++...++. +-.+..+.. .++++
T Consensus 530 is~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~ 609 (778)
T 3opb_A 530 IFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWS 609 (778)
T ss_dssp HTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHH
T ss_pred hcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHH
Confidence 6443 2789999999983 2111 1567888888888775431 224455555 48999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCChhhH-HHHHh------cCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchh
Q 000133 609 TMIKILSSTKEETQAKSASALAGIFETRKDLR-ESSIA------VKTLWSVMKLLDVGSECILVEASRCLAAIFLSVREN 681 (2100)
Q Consensus 609 ~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~-~~~~~------~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~ 681 (2100)
.|..+|.++++.+|++|+++++||+.+ ++.+ ..+.. .+.+++|+.++++++.++++.|+++|++++.+.+..
T Consensus 610 ~L~~LL~s~n~~VrrAA~elI~NL~~~-~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~i 688 (778)
T 3opb_A 610 TIENLMLDENVPLQRSTLELISNMMSH-PLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLI 688 (778)
T ss_dssp HHHHGGGCSSHHHHHHHHHHHHHHHTS-GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHH
Confidence 999999999999999999999999986 4432 23322 224889999999999999999999999997655434
Q ss_pred HHHHHHhC-CChHHHHHHhCC--CCHHHHHHHHHHHHHHhc----Cc--HHHHHHH-HcCcHHHHHHHHccCC
Q 000133 682 REVAAVAR-DALSPLVVLAGS--PVLEVAEQATCALANLIL----DS--EVSEKAI-AEEIILPATRVLCEGT 744 (2100)
Q Consensus 682 ~~~~~~~~-~~l~~Lv~ll~~--~~~evr~~aa~aL~~L~~----~~--~~~~~~v-~~~~v~~L~~ll~~~~ 744 (2100)
.+. +++. ++++.|+.++.+ ++++++++++.++.||+. +. +....+. +......|.+.+++++
T Consensus 689 a~~-ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~~ 760 (778)
T 3opb_A 689 AKE-LLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGD 760 (778)
T ss_dssp HHH-HTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSSS
T ss_pred HHH-HHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCCC
Confidence 444 5565 799999999998 899999999999999984 22 2223333 3445555555555544
No 28
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.91 E-value=2.9e-20 Score=271.20 Aligned_cols=1044 Identities=13% Similarity=0.076 Sum_probs=626.1
Q ss_pred ChHHHHHHHHHHHHHhCCCccc-hhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHh
Q 000133 372 PFLVQERTIEALASLYGNPLLS-IKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISL 450 (2100)
Q Consensus 372 ~~~vq~~aa~aL~~L~~~~~~~-~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~l 450 (2100)
+..+|..|...|.+....+... ..-.....++.++..+.+.++.+|..|+.+|..++...+. ..+ ...++.|+..
T Consensus 19 d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~--~~i~~~Ll~~ 94 (1230)
T 1u6g_C 19 DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV--ETIVDTLCTN 94 (1230)
T ss_dssp SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH--HHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHH--HHHHHHHHHH
Confidence 4457888888888764433211 1011124567788888899999999999999999875433 111 1356888888
Q ss_pred hCCCCHHHHHHHHHHHHHhccCCccc-----HHHHHhcCChHHHHHhcc-CCCHHHHHHHHHHHHHHhcCChh-hHHHHH
Q 000133 451 LGLSSEQQQECSVALLCLLSNENDDS-----KWAITAAGGIPPLVQILE-SGSAKAKEDSASILRNLCNHSED-IRACVE 523 (2100)
Q Consensus 451 L~s~~~~v~~~A~~aL~nLs~~~~~~-----~~~i~~~g~i~~Lv~lL~-~~~~~vre~A~~aL~~L~~~~~~-~~~~i~ 523 (2100)
+.++++.+|..|+.+|..++...... ...-.-...+|.|+..+. +++..+|+.|+.+|..++...+. ....
T Consensus 95 l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~-- 172 (1230)
T 1u6g_C 95 MLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF-- 172 (1230)
T ss_dssp TTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTT--
T ss_pred hcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHH--
Confidence 88999999999999999987543322 011122346899999998 47899999999999999853211 1000
Q ss_pred hCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC----CcHHHHHHHhhcCC-cchHHHHHHHHHHHHhccCchhHHH
Q 000133 524 SADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT----ATISQLTALLTSDL-PESKVYVLDALKSMLSVVSFSDILR 598 (2100)
Q Consensus 524 ~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~----~~i~~L~~lL~~~~-~~~~~~a~~aL~~l~~~~~~~~~~~ 598 (2100)
-...++.|+..+.+.++.+++.|+.+|..++..... ..++.++..+.+.. +.+|..+.++++.++...+.. +.
T Consensus 173 ~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~--~~ 250 (1230)
T 1u6g_C 173 HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHR--IG 250 (1230)
T ss_dssp HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGG--GT
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHH--HH
Confidence 023567788888888899999999999999875432 45788888776553 467888899999887654321 11
Q ss_pred HhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcC--------------------
Q 000133 599 EGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDV-------------------- 658 (2100)
Q Consensus 599 ~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~-------------------- 658 (2100)
.. -...+|.++..+.+.++++|+.+..++..++...++... ......+|.+++.+..
T Consensus 251 ~~--l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~-~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~ 327 (1230)
T 1u6g_C 251 EY--LEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVY-PHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADG 327 (1230)
T ss_dssp TS--CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCH-HHHHHHHHHHTTCCCCC-------------------
T ss_pred HH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHH-HhHHHHHHHHHHHhCCCCCCCCcccccccccccccc
Confidence 11 135689999999999999999999999999876443211 1223456666665531
Q ss_pred -----------------CCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcC-
Q 000133 659 -----------------GSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD- 720 (2100)
Q Consensus 659 -----------------~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~- 720 (2100)
.+..+++.|+.++..++...++. ....-...++.|+..+++.++++|..+..++..++..
T Consensus 328 ~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~--~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 405 (1230)
T 1u6g_C 328 GDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEM--LPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQT 405 (1230)
T ss_dssp -----------------CTTHHHHHHHHHHHHHHTTCCTT--HHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHH
T ss_pred cccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhH--HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHh
Confidence 01246888999999987644321 1123356788888888899999999999999888631
Q ss_pred ------------------cHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHH
Q 000133 721 ------------------SEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALV 782 (2100)
Q Consensus 721 ------------------~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li 782 (2100)
+.......-+.+++.+.+.+++++..+|..+..+|..+....+.. +.. .....++.++
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~--l~~--~l~~ll~~l~ 481 (1230)
T 1u6g_C 406 RPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGA--LTQ--HIPVLVPGII 481 (1230)
T ss_dssp CCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTT--TGG--GHHHHHHHHH
T ss_pred ccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhh--hHH--HHHHHHHHHH
Confidence 112223345678888888899988889999999999998764321 111 1244567777
Q ss_pred Hhhhhccc--ccchHhHHHHHHHHHHcCCCCCCCCcccceeeccCCCchhhhhhhccCChhHHHHHHHHHHHHhcCCcc-
Q 000133 783 SFLESASG--SVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQPA- 859 (2100)
Q Consensus 783 ~~l~s~~~--~v~~~~al~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~a~~~L~~L~~~~~~- 859 (2100)
..+..... .+. ..++..+..+.+..... ...-.++..++.|+.++.+.+..++..+..++..+...-..
T Consensus 482 ~~L~d~~~~~~v~-~~a~~~l~~~~~~~~~~-------~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~ 553 (1230)
T 1u6g_C 482 FSLNDKSSSSNLK-IDALSCLYVILCNHSPQ-------VFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPL 553 (1230)
T ss_dssp HHTTCSSSCHHHH-HHHHHHHHHHHHSSCGG-------GGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHcCCCCcchHH-HHHHHHHHHHHHhCCHH-------HHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCc
Confidence 77776543 444 88888888886543220 11113456888899999999998988888888766410000
Q ss_pred --cchhcccccccchHHHHHHHh--hcCCcceecchhhHHHHHhhhchhhHHhhhhccccchhhHHHHHHHHhhhcCCCC
Q 000133 860 --VLGDEVTGASGCISSIARRVI--SCTNPKVKIGGAALLICAAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPL 935 (2100)
Q Consensus 860 --~~g~~~~~~~~~~~~~~~~~l--~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Lv~~l~~~~~~~~ 935 (2100)
..+..+..--......+...+ .+.++++|..+.+.+..+++.... .. ...+..++++|......
T Consensus 554 ~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~---------~~-~~~~~~~l~~L~~~l~~-- 621 (1230)
T 1u6g_C 554 DQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGD---------NL-GSDLPNTLQIFLERLKN-- 621 (1230)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGG---------GC-CTHHHHHHHHHHHHTTS--
T ss_pred ccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCc---------hh-hhhHHHHHHHHHHHhcc--
Confidence 000000000001112223334 566788999999998888865211 11 12234444444333211
Q ss_pred cCCCCChhHHHHHhhhhcccccCCCCCCCCcceecCchhHHHHHHHHhccCccchhhhhhccchhhhhhhhhhccccccc
Q 000133 936 RNQGNDDKEAISIYRYTSEEARNGGESESSTAVIFGENLAIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQ 1015 (2100)
Q Consensus 936 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1015 (2100)
......++.++..++...
T Consensus 622 ---e~~r~~~~~al~~i~~~~----------------------------------------------------------- 639 (1230)
T 1u6g_C 622 ---EITRLTTVKALTLIAGSP----------------------------------------------------------- 639 (1230)
T ss_dssp ---SSHHHHHHHHHHHHTTCS-----------------------------------------------------------
T ss_pred ---chhHHHHHHHHHHHHhCc-----------------------------------------------------------
Confidence 111122222222211000
Q ss_pred cccccCchhHHHHHHHHHHhcchhhhhhhhhhchHHHHHHhhcchhHHhhHhHHHHHHHHHhcCCCCchhhhhccccchh
Q 000133 1016 MDYKEDSSIWICALLLAILFQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGAAGG 1095 (2100)
Q Consensus 1016 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 1095 (2100)
.+.+-..|+. ..+|.|...+++++...|..++.++..+.......... .-
T Consensus 640 --~~~~~~~~~~--------------------~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~--------~~ 689 (1230)
T 1u6g_C 640 --LKIDLRPVLG--------------------EGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTA--------AM 689 (1230)
T ss_dssp --SCCCCHHHHH--------------------HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCH--------HH
T ss_pred --cccchHHHHH--------------------HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCH--------HH
Confidence 0001122321 55566666666666666666666776665544322100 11
Q ss_pred hHHhhc----ccccchhhHHhhhHhhhhccCCcHHHHHhhhhhcccccC---ccccccHHHHHHhcCCCCCCCCchHHHH
Q 000133 1096 LISLLG----CADADVQDLLDLSEEFALVRYPDQVALERLFRVEDIRVG---ATSRKAIPALVDLLKPIPDRPGAPFLAL 1168 (2100)
Q Consensus 1096 ~~~l~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~~~~---~~~~~~i~~Lv~~l~~~~~~~~~~~~Al 1168 (2100)
+..++. ....+++.. .+.+++.|..+.+.... ......++.++..+++.. .++....++
T Consensus 690 v~~~l~~ll~ll~~~D~~~-------------~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~~~~l 755 (1230)
T 1u6g_C 690 IDAVLDELPPLISESDMHV-------------SQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPL-LQGGALSAM 755 (1230)
T ss_dssp HHHHHTTCGGGSCTTCHHH-------------HHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTT-CCHHHHHHH
T ss_pred HHHHHHHHHhhcCcchHHH-------------HHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcc-cchHHHHHH
Confidence 111111 112222222 23456666655433322 245678888888886432 121111111
Q ss_pred -HHHHHHhhcCchhhhHHHhcCcHHHHHHHHhcC----Cc---chH-HHHHHHHHHHh-hc-CHHHHhhhcccCcHHHHH
Q 000133 1169 -GFLIQLAKDCPSNKIVMVEAGALEALTKYLSLG----PQ---DAT-EEAATDLLGIL-FS-SAEIRRHESAFAAVSQLV 1237 (2100)
Q Consensus 1169 -~~L~~la~~~~~~r~~i~e~G~i~~L~~~L~s~----~~---~~~-~~~~~~ll~~l-~~-~~~~~~~~~~~~al~~Li 1237 (2100)
...+.+...++. ....+.++..|-.. .. +.| ...+...++.+ .. .+.. ...++.++
T Consensus 756 ~~~~~~l~~~~~~-------~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~------~~~~~~~~ 822 (1230)
T 1u6g_C 756 LDFFQALVVTGTN-------NLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEG------PAVVGQFI 822 (1230)
T ss_dssp HHHHHHHHTTCCT-------TCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCS------HHHHTTTT
T ss_pred HHHHHHHHhcCCC-------CCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhh------HHHHHHHH
Confidence 122233322110 11345555544321 11 111 11122222221 11 1100 12344444
Q ss_pred HHHhc--CCHHHHHHHHHHHHHhhcchhhhhhhhhcCChHHHHHhhccCChhhHHHHHHHHHHhhcCCchhhHHHHhhhc
Q 000133 1238 AVLRL--GGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEM 1315 (2100)
Q Consensus 1238 ~~L~~--~~~~~r~~Aa~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~La~~~~~~~~~~~~v~~ 1315 (2100)
..+++ .++..+..+..+|+.++...+.. ..++.++.++..|.+.++.++.+|+.+|+.++.++..
T Consensus 823 ~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~---~~~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~~~~~---------- 889 (1230)
T 1u6g_C 823 QDVKNSRSTDSIRLLALLSLGEVGHHIDLS---GQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLP---------- 889 (1230)
T ss_dssp TTTTTTTCCHHHHHHHHHHHHHHHHHSCCC---SCTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHTHH----------
T ss_pred HHhCCCCccHHHHHHHHHHHHHhcccCCCc---ccccHHHHHHHHhCCCCHHHHHHHHHHhHHHhccCHH----------
Confidence 44543 34555666666677654311110 0134578888999999999999999999999843321
Q ss_pred chhHHHHHHHhhcCChhhHHHHHHHHHHHhcCcc-hHHHHHhhcChHHHHHHHhcCCchHHHHHHHHHHHhcccHHHHHH
Q 000133 1316 NAVDVLCRILSSNCSMELKGDAAELCGVLFGNTR-IRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAEL 1394 (2100)
Q Consensus 1316 gal~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~-~r~~~~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~ 1394 (2100)
..++.+++.+... ...+......+..+..... ...........+.|+..+.+.++..+..++..|+.++...
T Consensus 890 ~~lp~ll~~l~~~--~~~~~~~l~al~e~i~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~----- 962 (1230)
T 1u6g_C 890 EYLPFVLQEITSQ--PKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLID----- 962 (1230)
T ss_dssp HHHHHHHHHHHSC--GGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSS-----
T ss_pred HHHHHHHHHHhcc--chhhHHHHHHHHHHHhcCChhhHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccC-----
Confidence 2467777777654 3567777777776654321 1111111223344444455567778999999999998421
Q ss_pred HHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCchhhHHHHhcCcHHHHHHHhccCChhHHHHHHHHHHHHHhccCC
Q 000133 1395 VAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGI 1474 (2100)
Q Consensus 1395 ~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k~~i~~~~~i~~lv~~L~~~~~~~~~~aa~lL~~Ls~~~~~ 1474 (2100)
...++|.|...+.+.++.+|..++.++..+..+.+..-.... ...++.+++.|.+++..+|..+...+..++++...
T Consensus 963 --~~~l~p~l~~~l~~~~~~~R~~~~~~l~~~~~~~~~~~~~~l-~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~ 1039 (1230)
T 1u6g_C 963 --PETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLL-KNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPS 1039 (1230)
T ss_dssp --GGGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHH-HHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGG
T ss_pred --hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCchhhHHHH-HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcChH
Confidence 145789999999999999999999888887665432211111 12456667788888888999988888877765432
Q ss_pred cccccccCchHHHHHHhccC----------------CCCchhHhHHHHHHHHhhcCCCcccccccccCCChHhhhhccCC
Q 000133 1475 AKGPSAAKVVEPLFLLLTRS----------------EFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDS 1538 (2100)
Q Consensus 1475 ~~~~~~~~~v~~Ll~ll~~~----------------~~~~~~~~~A~~~L~nL~~~~~~~~~~~~~~~~~l~~Lv~~L~~ 1538 (2100)
.-.......++.|+....-. ++|-+++++|.++++.|.+...+. + ....+++.++.-|.+
T Consensus 1040 ~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~--i--~~~~~~~~~~~gl~d 1115 (1230)
T 1u6g_C 1040 LIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDR--L--DIFEFLNHVEDGLKD 1115 (1230)
T ss_dssp GTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSS--S--CHHHHHHHHHHTTSS
T ss_pred hHHHHHHHHHHHHHHHhcccHHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHHHHh--C--CHHHHHHHHHcccCc
Confidence 22223344556655544211 244589999999999998764332 2 344577888888888
Q ss_pred CCHHHHHHHHHHHHHhhccccccccccccCchHHHHHHhcc------------CCHHHHHHHHHHHHHhhcCC
Q 000133 1539 PAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGS------------GIHILQQRAVKALVSIALTW 1599 (2100)
Q Consensus 1539 ~~~~vq~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~lL~s------------~~~~vr~~Al~AL~~Ls~~~ 1599 (2100)
. .+++..+...|.++.........-.-...+++|.+.|+. ...+.++.+++++..|...+
T Consensus 1116 ~-~di~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qe~e~~~e~~r~~~r~~~~l~~~~ 1187 (1230)
T 1u6g_C 1116 H-YDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIP 1187 (1230)
T ss_dssp C-HHHHHHHHHHHHHHHHSCCHHHHTTTTTTHHHHHHHHHCCCCTTSCHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred h-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHHHHhCC
Confidence 4 899999999999997643322222223567888888743 33788999999999988654
No 29
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.9e-21 Score=250.14 Aligned_cols=523 Identities=12% Similarity=0.099 Sum_probs=351.8
Q ss_pred hHHHHHHHh--cCCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhh-c-CCCHHH--HHHHHHHHHHHhccCCCC
Q 000133 56 VPVLVSLLR--SGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLL-K-SSSAEG--QIAAAKTIYAVSQGGAKD 129 (2100)
Q Consensus 56 v~~L~~lL~--~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL-~-s~~~~~--~~~A~~aL~~Ls~~~~~~ 129 (2100)
+..|++.+. .+.+++|..+.-++..+-+..+.+-.-.-.+-+..++-=- . .++.+. -..++.+++-+. .
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~-----p 244 (778)
T 3opb_A 170 VRFLVKELILRISEDEVKSMMLIIFAELQSSFQKDFDKAVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSL-----T 244 (778)
T ss_dssp TTHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTT-----H
T ss_pred hhhHHHHhccccChhhhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCC-----H
Confidence 778888775 5677888877777776542222111111112233222000 1 122222 223344444332 2
Q ss_pred cccccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHH
Q 000133 130 YVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLL 209 (2100)
Q Consensus 130 ~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L 209 (2100)
.....+|..+|.+|.+.+.+.+. .+..+...++..|.. ++.+...|..| ..++++.|.+++++ ..++..|+.+|
T Consensus 245 ~~~s~lfl~e~~~~~l~~~~~~~--~~~~~~~a~L~lLsa-ACi~~~cR~~I-~~~~~~~L~~~l~~--~~ir~lAavvL 318 (778)
T 3opb_A 245 TLCSEIFLTKGLSKLFKKRVFEE--QDLQFTKELLRLLSS-ACIDETMRTYI-TENYLQLLERSLNV--EDVQIYSALVL 318 (778)
T ss_dssp HHHHHHHSTTTHHHHHHHHHHSS--CCHHHHHHHHHHHHH-HCCSHHHHHHH-HHHHHHHHHHHTTS--GGGHHHHHHHH
T ss_pred HHHHHHHccccHHHHHHHHHhcc--cchHHHHHHHHHHHH-HhCCcHHHHHH-HHhHHHHHHHHhcc--HHHHHHHHHHH
Confidence 34466788999999999888653 333355445554444 44666666655 56778999999975 58899999999
Q ss_pred HHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCC-hHHHHHhhcCCCcchhh
Q 000133 210 ACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNG-IPAMINATIAPSKEFMQ 288 (2100)
Q Consensus 210 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~-i~~Lv~ll~~~~~e~~~ 288 (2100)
..+..........+ ....+.+.+.|.++. .+.+..|+..|.+|+. +++.|..+++..+ ++.|+.++....
T Consensus 319 ~KL~~~~~~~~~si--~~La~~~~~~L~~~~-~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~~~----- 389 (778)
T 3opb_A 319 VKTWSFTKLTCINL--KQLSEIFINAISRRI-VPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKSQK----- 389 (778)
T ss_dssp HHHTGGGTCTTCCH--HHHHHHHHHHTTTCC-HHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTTTC-----
T ss_pred HHHhcCCCCCcCcH--HHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhCCC-----
Confidence 88875443221111 236778888888754 4569999999999998 6788888887655 999999997522
Q ss_pred hhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcC
Q 000133 289 GEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFK 368 (2100)
Q Consensus 289 ~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~ 368 (2100)
+..+...++..|.|++...+..... .+ .+.. |.++.+
T Consensus 390 ---d~s~~Ygal~IL~NLt~~~~~~~~e------~~-----------~l~~-----------------------Lk~~A~ 426 (778)
T 3opb_A 390 ---MTHCLYGLLVIMANLSTLPEEXXXX------XX-----------XXXX-----------------------XXXXXX 426 (778)
T ss_dssp ---CTTHHHHHHHHHHHTTCCCCCCCCC------CC--------------------------------------------
T ss_pred ---CchHHHHHHHHHHHhcCCCcccchh------hh-----------hhhh-----------------------hhhhcc
Confidence 2567889999999999753321110 00 0000 111111
Q ss_pred CCCChHHHHHHHHHHHHHhCCCc-cchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHH
Q 000133 369 PRLPFLVQERTIEALASLYGNPL-LSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLL 447 (2100)
Q Consensus 369 ~~~~~~vq~~aa~aL~~L~~~~~-~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~L 447 (2100)
.+.++. +.... .+..=.+..+ ++..+.+.|+++.|+.++.+.++.+|+.|+++|.+|+.+ +.++..+++.|++++|
T Consensus 427 ~~~p~~-~~~d~-~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R~~lvqqGal~~L 503 (778)
T 3opb_A 427 XXXPAA-DKVGA-EKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKII 503 (778)
T ss_dssp ---------CCT-HHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHH
T ss_pred ccCccc-Ccccc-cccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHH
Confidence 000000 00000 0000000112 456788999999999999999999999999999999977 7889999999999999
Q ss_pred HHhhCCCCHH---HHHHHHHHHHHhccCCcccHHHHHh---cCChHHHHHhccC--CCH------------HHHHHHHHH
Q 000133 448 ISLLGLSSEQ---QQECSVALLCLLSNENDDSKWAITA---AGGIPPLVQILES--GSA------------KAKEDSASI 507 (2100)
Q Consensus 448 v~lL~s~~~~---v~~~A~~aL~nLs~~~~~~~~~i~~---~g~i~~Lv~lL~~--~~~------------~vre~A~~a 507 (2100)
+.++.+.... .+..|+.+|.+|+. ..+....+.. .|+|++|+++|.. +.. -.+..|+.|
T Consensus 504 L~lL~s~~~~~~~~k~~AA~ALArLli-s~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~A 582 (778)
T 3opb_A 504 LEYLANKQDIGEPIRILGCRALTRMLI-FTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLA 582 (778)
T ss_dssp HHHTTCC---CCHHHHHHHHHHHHHHH-TSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHH
T ss_pred HHHHhcCCCcchHHHHHHHHHHHHHHh-cCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHH
Confidence 9999987654 89999999999984 2222222211 3899999999983 211 236789999
Q ss_pred HHHHhcCC----hhhHHHHHhC-CcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHH
Q 000133 508 LRNLCNHS----EDIRACVESA-DAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLD 582 (2100)
Q Consensus 508 L~~L~~~~----~~~~~~i~~~-g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~ 582 (2100)
|.||+..+ ++.|..+.++ |+++.|.++|.+++..+++.|+++++||+.+.+. +.
T Consensus 583 LTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~--i~------------------- 641 (778)
T 3opb_A 583 LTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLT--IA------------------- 641 (778)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGG--TG-------------------
T ss_pred HHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHH--HH-------------------
Confidence 99999875 3567878885 9999999999999999999999999999874321 00
Q ss_pred HHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc-CchHHHHHhhcC--C
Q 000133 583 ALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAV-KTLWSVMKLLDV--G 659 (2100)
Q Consensus 583 aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~-g~v~~Lv~lL~~--~ 659 (2100)
....... .-...+.++.|+.++.+++.++|++|+++|++++..++..+..+.+. ++++.|+.++.+ +
T Consensus 642 -----~k~~~~~-----~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~ 711 (778)
T 3opb_A 642 -----AKFFNLE-----NPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQID 711 (778)
T ss_dssp -----GGTSCCS-----SHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred -----HHHHhhc-----CchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCC
Confidence 0000000 00012248999999999999999999999999987667777888877 799999999988 8
Q ss_pred CHHHHHHHHHHHHHHhc
Q 000133 660 SECILVEASRCLAAIFL 676 (2100)
Q Consensus 660 ~~~v~~~aa~aL~~L~~ 676 (2100)
+++++..++-++.||+.
T Consensus 712 ~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 712 DIELRQRLLMLFFGLFE 728 (778)
T ss_dssp CHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999999985
No 30
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.88 E-value=7.7e-20 Score=256.49 Aligned_cols=743 Identities=13% Similarity=0.071 Sum_probs=473.6
Q ss_pred hhHHHHHHHHHHHHccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHH---hcCCHHHHHHHHHHHHhhh
Q 000133 6 GTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLL---RSGSLAVKIQAATVLGSLC 82 (2100)
Q Consensus 6 ~~~~~v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL---~~~~~~v~~~aa~~L~~L~ 82 (2100)
.....+.++++... +.++..|..|-..|..+.... +....|..++ .+.+..+|..|+..|.+..
T Consensus 10 ~~~~~l~~~l~~~~--s~d~~~r~~Ae~~L~~~~~~p-----------~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i 76 (852)
T 4fdd_A 10 QGLQQILQLLKESQ--SPDTTIQRTVQQKLEQLNQYP-----------DFNNYLIFVLTKLKSEDEPTRSLSGLILKNNV 76 (852)
T ss_dssp HHHHHHHHHHHHHT--CSCHHHHHHHHHHHHHHTTSH-----------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHh--CcCHHHHHHHHHHHHHHHhCC-----------CHHHHHHHHHhccCCCChHHHHHHHHHHHHHH
Confidence 34566666666554 346677888888887664322 2334445555 4567789999999998876
Q ss_pred cc------chhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCc
Q 000133 83 KE------NELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSG 156 (2100)
Q Consensus 83 ~~------~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~ 156 (2100)
+. ++.+..+ -+.++..|.++++.+|..++.++..+.... . .. .-.+.+|.|++.+.+. +
T Consensus 77 ~~~w~~~~~~~~~~i-----k~~ll~~l~~~~~~vr~~~a~~i~~ia~~~---~--~~--~wp~ll~~L~~~l~~~---~ 141 (852)
T 4fdd_A 77 KAHFQNFPNGVTDFI-----KSECLNNIGDSSPLIRATVGILITTIASKG---E--LQ--NWPDLLPKLCSLLDSE---D 141 (852)
T ss_dssp TTSGGGCCHHHHHHH-----HHHHHTTTTCSSHHHHHHHHHHHHHHHHHT---T--TT--TCTTHHHHHHHHHSCS---S
T ss_pred HHccCCCCHHHHHHH-----HHHHHHHHcCCCHHHHHHHHHHHHHHHHhc---C--cc--ccHHHHHHHHHHHcCC---C
Confidence 42 1223322 345666677888999999999999998732 1 11 1245688888888653 4
Q ss_pred chHHHHHHHHHHHhccCChhhHHH-H---HhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHH
Q 000133 157 NVVDNLLTGALRNLSTSTEGFWAA-T---VQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQL 232 (2100)
Q Consensus 157 ~~v~~~a~~aL~nL~~~~~~~~~~-i---~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L 232 (2100)
..++..+..+|..++...+..... . .-...++.++++++++++.+|..|+.+|..+....+..... .-...++.+
T Consensus 142 ~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~-~~~~~l~~l 220 (852)
T 4fdd_A 142 YNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALML-HIDSFIENL 220 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHT-SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHH-HHHHHHHHH
Confidence 457778888898887433221110 0 01235778888889999999999999997766443321111 113567888
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcc
Q 000133 233 LKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSN 312 (2100)
Q Consensus 233 v~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~ 312 (2100)
++++.++ +.++|..|+++|..++...++.-....+ +.++.++..+.+.+ ..++..++..+.+++....
T Consensus 221 ~~~~~d~-~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~---------~~vr~~a~e~l~~l~~~~~- 288 (852)
T 4fdd_A 221 FALAGDE-EPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQD---------ENVALEACEFWLTLAEQPI- 288 (852)
T ss_dssp HHHHTCC-CHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSS---------HHHHHHHHHHHHHHTTSTT-
T ss_pred HHHcCCC-CHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCc---------HHHHHHHHHHHHHHhcchh-
Confidence 8888764 4689999999999999755533211111 35666777765543 6788888888888775310
Q ss_pred hhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhc----------CCC-----------C
Q 000133 313 VISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQF----------KPR-----------L 371 (2100)
Q Consensus 313 ~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL----------~~~-----------~ 371 (2100)
....... .+. .+.+.+...+ +.. .
T Consensus 289 -------------~~~~~~~---~~~-------------------~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~ 333 (852)
T 4fdd_A 289 -------------CKDVLVR---HLP-------------------KLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTIS 333 (852)
T ss_dssp -------------HHHHHTT---THH-------------------HHHHHHHHHTSCCHHHHHHHHC------------C
T ss_pred -------------HHHHHHH---HHH-------------------HHHHHHHHHcCCcHhHHHHhcCCcccccccccccc
Confidence 0000000 011 1122222222 011 2
Q ss_pred ChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhh
Q 000133 372 PFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLL 451 (2100)
Q Consensus 372 ~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL 451 (2100)
...+|..++.+|..++.... ..+. ...++.+..++.++++.+|..|+.+|++++.+....... .-.+.++.++.++
T Consensus 334 ~~~vr~~a~~~L~~la~~~~--~~~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l 409 (852)
T 4fdd_A 334 DWNLRKCSAAALDVLANVYR--DELL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCL 409 (852)
T ss_dssp CCCHHHHHHHHHHHHHHHHG--GGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHhcc--HHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHc
Confidence 34578889999998853211 1111 135677788888899999999999999999875431111 1135689999999
Q ss_pred CCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChh-hHHHHHhCCcHHH
Q 000133 452 GLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSED-IRACVESADAVPA 530 (2100)
Q Consensus 452 ~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~-~~~~i~~~g~i~~ 530 (2100)
+++++.++..++++|++++...........-.+.++.|++.+.+.++.+|+.|+++|.+++...+. .... -.+.++.
T Consensus 410 ~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~--l~~ll~~ 487 (852)
T 4fdd_A 410 SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPY--LAYILDT 487 (852)
T ss_dssp TCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGG--HHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhH--HHHHHHH
Confidence 999999999999999999853221111111234678899999889999999999999999864221 1111 1356788
Q ss_pred HHHHhhcCChhHHHHHHHHHHHHhcCCC-----C----CcHHHHHH---HhhcCCcchHHHHHHHHHHHHhccCchhHHH
Q 000133 531 LLWLLKNGSANGKEIAAKTLNHLIHKSD-----T----ATISQLTA---LLTSDLPESKVYVLDALKSMLSVVSFSDILR 598 (2100)
Q Consensus 531 Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~-----~----~~i~~L~~---lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~ 598 (2100)
|+.++++.+.+....+..+++.++.... + ..+|.++. .+.+++++.+ .+.++++.++......- .
T Consensus 488 L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~--~ 564 (852)
T 4fdd_A 488 LVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGF--L 564 (852)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGG--H
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhH--H
Confidence 8888888777777777777877764221 1 23444442 3446667764 78888888776433211 0
Q ss_pred HhhhccchHHHHHHHhc-----------------CCCHHHHHHHHHHHHHHhcCChh-hHHHHHhcCchHHHHHhhcCCC
Q 000133 599 EGSAANDAVETMIKILS-----------------STKEETQAKSASALAGIFETRKD-LRESSIAVKTLWSVMKLLDVGS 660 (2100)
Q Consensus 599 ~~i~~~~~i~~Lv~lL~-----------------s~~~~~~~~Aa~aL~~L~~~~~~-~~~~~~~~g~v~~Lv~lL~~~~ 660 (2100)
... ...++.++.++. .++.+.+..+.+++..++..-.. ....+...+.++.+...+.+++
T Consensus 565 ~~~--~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 642 (852)
T 4fdd_A 565 PYC--EPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKM 642 (852)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSS
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCC
Confidence 000 112333333332 23567888999999998865433 3333335789999999999988
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHH
Q 000133 661 ECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVL 740 (2100)
Q Consensus 661 ~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll 740 (2100)
..++..+..+++.++...+..-.. .+ ...++.+++.+....++++..|+++++.++..-+......-..+++.|++++
T Consensus 643 ~~vr~~a~~~l~~l~~~~~~~~~~-~l-~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l 720 (852)
T 4fdd_A 643 PEVRQSSFALLGDLTKACFQHVKP-CI-ADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEII 720 (852)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGTGG-GH-HHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhhHHHHH-HH-HHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHh
Confidence 999999999999998655432111 11 2367778888888889999999999999973321112223368899999999
Q ss_pred ccCCh--hHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcccccchHhHHHHHHHHHHcCCCCCCCCccc
Q 000133 741 CEGTI--SGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPAW 818 (2100)
Q Consensus 741 ~~~~~--~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~~~~al~~L~~L~~~~~~~~~~~~~~ 818 (2100)
++.+. .++++++.++.++....+.. +.. .....++..++.|...++...++.++..|..+.+..+.
T Consensus 721 ~~~~~~~~~~~~a~~~igrl~~~~~~~--~~~--~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~-------- 788 (852)
T 4fdd_A 721 NRPNTPKTLLENTAITIGRLGYVCPQE--VAP--MLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPS-------- 788 (852)
T ss_dssp TCSSCCHHHHHHHHHHHHHHHHHCHHH--HGG--GHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGG--------
T ss_pred CCCCCCchHHHHHHHHHHHHHHhCHHH--hCc--cHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChH--------
Confidence 87543 48999999999999875431 111 12345677778787654443347888888888766543
Q ss_pred ceeeccCCCchhhhhhhc---cCChhHHHHHHHHHHHH
Q 000133 819 QVLAEFPKSITPIVSSIA---DATPLLQDKAIEILSRL 853 (2100)
Q Consensus 819 ~~~~~~~~~l~~L~~~l~---~~~~~~~~~a~~~L~~L 853 (2100)
. ....+..+..+++ +.++.+++...++|..+
T Consensus 789 ~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 822 (852)
T 4fdd_A 789 G----VIQDFIFFCDAVASWINPKDDLRDMFCKILHGF 822 (852)
T ss_dssp G----TGGGHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred h----HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 1 1111222222333 34578888888888777
No 31
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.88 E-value=4.9e-21 Score=227.14 Aligned_cols=243 Identities=25% Similarity=0.319 Sum_probs=223.7
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHH
Q 000133 400 EAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWA 479 (2100)
Q Consensus 400 g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~ 479 (2100)
++++.|+.+++++++++|..|+++|.+++...+.++..+.+.|+++.|+.+++++++.++..++++|++++..+++.+..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 56899999999999999999999999999998878899999999999999999999999999999999999866899999
Q ss_pred HHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC
Q 000133 480 ITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT 559 (2100)
Q Consensus 480 i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~ 559 (2100)
+.+.|+++.|+.++.++++++++.|+++|++|+..+++.+..+.+.|+++.|+++++++++.++..++++|++|+...+.
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999977889999999999999999999999999999999999999864321
Q ss_pred CcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhh
Q 000133 560 ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDL 639 (2100)
Q Consensus 560 ~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~ 639 (2100)
....+.+.++++.|+.++.++++.++..|+++|.+++.++++.
T Consensus 162 -------------------------------------~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 204 (252)
T 4hxt_A 162 -------------------------------------AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSA 204 (252)
T ss_dssp -------------------------------------HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHH
T ss_pred -------------------------------------HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 1123445788999999999999999999999999999987888
Q ss_pred HHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc
Q 000133 640 RESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVR 679 (2100)
Q Consensus 640 ~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~ 679 (2100)
+..+.+.|+++.|++++.++++.++..|+++|.+++...+
T Consensus 205 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 205 IKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred HHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence 8999999999999999999999999999999999987654
No 32
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.87 E-value=7.6e-21 Score=225.52 Aligned_cols=241 Identities=24% Similarity=0.285 Sum_probs=219.4
Q ss_pred CcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 000133 442 EGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRAC 521 (2100)
Q Consensus 442 g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~ 521 (2100)
|+++.|+.+|++++++++..|+++|.+++...++.+..+.+.|+++.|+++|.++++++++.|+++|++++..+++.+..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 67999999999999999999999999999877779999999999999999999999999999999999999987999999
Q ss_pred HHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhh
Q 000133 522 VESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGS 601 (2100)
Q Consensus 522 i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i 601 (2100)
+.+.|+++.|+.+++++++.++..|+++|++|+...+. .+..+
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~-------------------------------------~~~~~ 124 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE-------------------------------------AIKAI 124 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHH-------------------------------------HHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH-------------------------------------HHHHH
Confidence 99999999999999999999999999999999853211 12234
Q ss_pred hccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchh
Q 000133 602 AANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVREN 681 (2100)
Q Consensus 602 ~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~ 681 (2100)
...++++.|+++++++++.++..|+++|++++..+++....+...|+++.|+.++.++++.++..++.+|++++.+.+ .
T Consensus 125 ~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~ 203 (252)
T 4hxt_A 125 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPT-S 203 (252)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBH-H
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH-H
Confidence 456889999999999999999999999999999888888889999999999999999999999999999999987544 4
Q ss_pred HHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcC
Q 000133 682 REVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD 720 (2100)
Q Consensus 682 ~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~ 720 (2100)
.+..+.+.|+++.|++++.++++++++.|+++|+||...
T Consensus 204 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 204 AIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG 242 (252)
T ss_dssp HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcC
Confidence 555588999999999999999999999999999999844
No 33
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.86 E-value=6.6e-21 Score=226.26 Aligned_cols=240 Identities=19% Similarity=0.213 Sum_probs=215.4
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHH
Q 000133 400 EAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWA 479 (2100)
Q Consensus 400 g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~ 479 (2100)
...+.++.+|.++++++|..|+++|+++.......++.+.+.|+++.|+.+++++++.++..|+++|++++.++++.+..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 45788999999999999999999998866656677888999999999999999999999999999999999878999999
Q ss_pred HHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC
Q 000133 480 ITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT 559 (2100)
Q Consensus 480 i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~ 559 (2100)
+.+.|+++.|+++|.++++.+++.|+++|+||+...+.....+.+.|+++.|+++++++++.++..|+++|++|+...+.
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 99999999999999999999999999999999986444438889999999999999999999999999999999864311
Q ss_pred CcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhh
Q 000133 560 ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDL 639 (2100)
Q Consensus 560 ~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~ 639 (2100)
....+.+.++++.|+.++.++++.+++.|+++|++++..+++.
T Consensus 172 -------------------------------------~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 214 (252)
T 4db8_A 172 -------------------------------------QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 214 (252)
T ss_dssp -------------------------------------HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHH
T ss_pred -------------------------------------HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 1123345678999999999999999999999999999888888
Q ss_pred HHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 000133 640 RESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFL 676 (2100)
Q Consensus 640 ~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~ 676 (2100)
+..+.+.|+++.|+.++.++++.++..|+.+|.+|+.
T Consensus 215 ~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 215 KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999999999999999854
No 34
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.86 E-value=3e-19 Score=260.60 Aligned_cols=1033 Identities=12% Similarity=0.075 Sum_probs=553.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHH
Q 000133 402 KRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAIT 481 (2100)
Q Consensus 402 i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~ 481 (2100)
++.++.-+.++|+++|..|...|.+...........-.....++.|++.+.++++.+|..|+.+|++++...++. .
T Consensus 8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~----~ 83 (1230)
T 1u6g_C 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY----Q 83 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH----H
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH----H
Confidence 556777788899999999999998865442110000001145788999999999999999999999998644331 1
Q ss_pred hcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhh------HHHHHhCCcHHHHHHHhh-cCChhHHHHHHHHHHHHh
Q 000133 482 AAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDI------RACVESADAVPALLWLLK-NGSANGKEIAAKTLNHLI 554 (2100)
Q Consensus 482 ~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~------~~~i~~~g~i~~Lv~lL~-~~~~~~~~~Aa~aL~~L~ 554 (2100)
-...++.|+..+.++++.+|..|+.+|..++...... ... .....+|.|+..+. +.++.++..|..+|..++
T Consensus 84 ~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~-~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~ 162 (1230)
T 1u6g_C 84 VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAAN-VCKKITGRLTSAIAKQEDVSVQLEALDIMADML 162 (1230)
T ss_dssp HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHH-HHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHH-HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 1235778888888888899999999999998643221 011 11346788888887 466777777777777776
Q ss_pred cCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 000133 555 HKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFE 634 (2100)
Q Consensus 555 ~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~ 634 (2100)
....... . +. . ...++.|...+.++++.+|..|+.+|..++.
T Consensus 163 ~~~~~~l-----------------------------~--~~-~------~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~ 204 (1230)
T 1u6g_C 163 SRQGGLL-----------------------------V--NF-H------PSILTCLLPQLTSPRLAVRKRTIIALGHLVM 204 (1230)
T ss_dssp HHTCSSC-----------------------------T--TT-H------HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTT
T ss_pred HHhHhHH-----------------------------H--HH-H------HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 4221100 0 00 0 1236777788888899999999999999997
Q ss_pred CChhhHHHHHhcCchHHHHHhhcCCC-HHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHH
Q 000133 635 TRKDLRESSIAVKTLWSVMKLLDVGS-ECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCA 713 (2100)
Q Consensus 635 ~~~~~~~~~~~~g~v~~Lv~lL~~~~-~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~a 713 (2100)
..++. . ....++.++..+.+.+ ..++..++.+++.++...+. +....-...++.+++.+.+.++++|+.+..+
T Consensus 205 ~~~~~---~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~ 278 (1230)
T 1u6g_C 205 SCGNI---V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNVDDDELREYCIQA 278 (1230)
T ss_dssp TC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHH
T ss_pred hcCHH---H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 64322 1 2346888888885442 35677888899888765432 1111224678888999999999999999999
Q ss_pred HHHHhcCcHHHHHHHHcCcHHHHHHHHccC-------------------------------------ChhHHHHHHHHHH
Q 000133 714 LANLILDSEVSEKAIAEEIILPATRVLCEG-------------------------------------TISGKTLAAAAIA 756 (2100)
Q Consensus 714 L~~L~~~~~~~~~~v~~~~v~~L~~ll~~~-------------------------------------~~~~~~~Aa~aL~ 756 (2100)
+..++..........-+.+++.+++.+.++ ...+|..|+.+|.
T Consensus 279 l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~ 358 (1230)
T 1u6g_C 279 FESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLD 358 (1230)
T ss_dssp HHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHH
T ss_pred HHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHH
Confidence 999873311111112244555555544321 1125888999999
Q ss_pred HHHhcCccchhHhhhhhccCcHHHHHHhhhhcccccchHhHHHHHHHHHHcCCCCC-C--C--------CcccceeeccC
Q 000133 757 RLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASG-H--V--------KPAWQVLAEFP 825 (2100)
Q Consensus 757 ~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~~~~al~~L~~L~~~~~~~~-~--~--------~~~~~~~~~~~ 825 (2100)
.+....+. .+.. .....++.++..+++.+..+. ..++.+|..+.+...... . . .+...+.-..+
T Consensus 359 ~l~~~~~~--~~~~--~~~~l~~~l~~~l~d~~~~Vr-~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 433 (1230)
T 1u6g_C 359 AVVSTRHE--MLPE--FYKTVSPALISRFKEREENVK-ADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVP 433 (1230)
T ss_dssp HHHTTCCT--THHH--HHTTTHHHHHSTTSCSSSHHH-HHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTT
T ss_pred HHHHhchh--HHHH--HHHHHHHHHHHHcCCCchHHH-HHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhh
Confidence 88864432 1222 223456666666655555555 788888887765432100 0 0 00011122334
Q ss_pred CCchhhhhhhccCChhHHHHHHHHHHHHhcCCcccchhcccccccchHHHHHHHhhcCCcceecchhhHHHHHhhhchhh
Q 000133 826 KSITPIVSSIADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGAALLICAAKVNHQR 905 (2100)
Q Consensus 826 ~~l~~L~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~g~~~~~~~~~~~~~~~~~l~s~~~~~r~~~~~~~~~~~~~~~~~ 905 (2100)
..++.+.+.+.+.++.+|..+..+|..+ .+...
T Consensus 434 ~ll~~l~~~l~~~~~~vr~~~~~~L~~l---------------------------------------------~~~~~-- 466 (1230)
T 1u6g_C 434 NIVKALHKQMKEKSVKTRQCCFNMLTEL---------------------------------------------VNVLP-- 466 (1230)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHH---------------------------------------------HHHST--
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHH---------------------------------------------HHHch--
Confidence 4445455556666666665555555544 11100
Q ss_pred HHhhhhccccchhhHHHHHHHHhhhcCCCCcCCCCChhHHHHHhhhhcccccCCCCCCCCcceecCchhHHHHHHHHhcc
Q 000133 906 IVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAISIYRYTSEEARNGGESESSTAVIFGENLAIWLLCVLACH 985 (2100)
Q Consensus 906 ~~~~~~~~~~~~~~v~~Lv~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 985 (2100)
..+ ..+....+..+.+.|..... ......+++..+..+.+. +.......++...++.++.++.+.
T Consensus 467 --~~l--~~~l~~ll~~l~~~L~d~~~-----~~~v~~~a~~~l~~~~~~-----~~~~~~~~~l~~llp~L~~~l~d~- 531 (1230)
T 1u6g_C 467 --GAL--TQHIPVLVPGIIFSLNDKSS-----SSNLKIDALSCLYVILCN-----HSPQVFHPHVQALVPPVVACVGDP- 531 (1230)
T ss_dssp --TTT--GGGHHHHHHHHHHHTTCSSS-----CHHHHHHHHHHHHHHHHS-----SCGGGGHHHHTTTHHHHHHHHTCS-
T ss_pred --hhh--HHHHHHHHHHHHHHHcCCCC-----cchHHHHHHHHHHHHHHh-----CCHHHHHhHHHHHHHHHHHHHccc-
Confidence 000 12334445555555553321 112344555555543321 111101112444455555544321
Q ss_pred Cccchhhhhh-ccchhhhhhhhhhccccccccccccCchhHHHHHHHHHHhcchhhhhhhhhhchHHHHHHhh--cchhH
Q 000133 986 DEKCKIVIME-AGAMDVLTDRISDSLSQFTQMDYKEDSSIWICALLLAILFQDRDIIRAHATMKAIPILANLL--KSEES 1062 (2100)
Q Consensus 986 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~L~~~~--~~~~~ 1062 (2100)
+.-+..+ .+++..+.+.+... . ...+.. ..+-....+|.+...+ .|++.
T Consensus 532 ---~~~v~~~al~~l~~l~~~~~~~----~-~~~~~~--------------------~~~~~~~ll~~ll~~l~~~d~~~ 583 (1230)
T 1u6g_C 532 ---FYKITSEALLVTQQLVKVIRPL----D-QPSSFD--------------------ATPYIKDLFTCTIKRLKAADIDQ 583 (1230)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHCCS----S-SCCCCC--------------------CHHHHHHHHHHHHHHHSCSSSCH
T ss_pred ---chHHHHHHHHHHHHHHHHhcCc----c-cccccc--------------------hHHHHHHHHHHHHHHHhccCCCH
Confidence 1111111 12333333332210 0 000000 0011124455555545 34444
Q ss_pred HhhHhHHHHHHHHHhcCCCCchhhhhccccchhhHHhhcccccchhhHHhhhHhhhhccCCcHHHHHhhhhhcccccCcc
Q 000133 1063 ANRYFAAQAVASLVCNGSRGTLLSVANSGAAGGLISLLGCADADVQDLLDLSEEFALVRYPDQVALERLFRVEDIRVGAT 1142 (2100)
Q Consensus 1063 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~~~~~~ 1142 (2100)
..|.-++.++..+....... ....
T Consensus 584 ~vr~~a~~~lg~L~~~~g~~--------------------------------------------------------~~~~ 607 (1230)
T 1u6g_C 584 EVKERAISCMGQIICNLGDN--------------------------------------------------------LGSD 607 (1230)
T ss_dssp HHHHHHHHHHHHHHHHTGGG--------------------------------------------------------CCTH
T ss_pred HHHHHHHHHHHHHHHHhCch--------------------------------------------------------hhhh
Confidence 44444444444333211100 0001
Q ss_pred ccccHHHHHHhcCCCCCCCCchHHHHHHHHHHhhcCchhhhHHHhcCcHHHHHHHHhcCCcchHHHHHHHHHHHhhcCHH
Q 000133 1143 SRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDATEEAATDLLGILFSSAE 1222 (2100)
Q Consensus 1143 ~~~~i~~Lv~~l~~~~~~~~~~~~Al~~L~~la~~~~~~r~~i~e~G~i~~L~~~L~s~~~~~~~~~~~~ll~~l~~~~~ 1222 (2100)
....++.|.+.++... .+..+++.+..++......-....-...++.|...+.+.+......++..+-.++...+.
T Consensus 608 ~~~~l~~L~~~l~~e~----~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~ 683 (1230)
T 1u6g_C 608 LPNTLQIFLERLKNEI----TRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSD 683 (1230)
T ss_dssp HHHHHHHHHHHTTSSS----HHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHhccch----hHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccc
Confidence 1223444444443221 224566667766642110000111134677777777776655566665555544432211
Q ss_pred HHhhhcccCcHHHHHH----HHhcCCHHHHHHHHHHHHHhhcchhhhhhhhhcCChHHHHHhhccCChhhH-HHHHHHHH
Q 000133 1223 IRRHESAFAAVSQLVA----VLRLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQ-HAAIAALV 1297 (2100)
Q Consensus 1223 ~~~~~~~~~al~~Li~----~L~~~~~~~r~~Aa~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~-~~A~~aL~ 1297 (2100)
. + ....+.+++. ++.+.+...+..+..+|..+.........-.....++.++.++.+...... ..++..+.
T Consensus 684 ~---~-~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~ 759 (1230)
T 1u6g_C 684 S---L-TAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFF 759 (1230)
T ss_dssp T---C-CHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred c---C-CHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcccchHHHHHHHHHH
Confidence 0 0 1122333321 223445556667777777776432211111245678999988876542221 11222221
Q ss_pred -HhhcCCchhhHHHHhhhcchhHHHHHHHhhc--------CChhhHHHHHHHHHHHhcC--cchHHHHHhhcChHHHHHH
Q 000133 1298 -RLLSENPSRALAVADVEMNAVDVLCRILSSN--------CSMELKGDAAELCGVLFGN--TRIRSTVAAARCVEPLVSL 1366 (2100)
Q Consensus 1298 -~La~~~~~~~~~~~~v~~gal~~L~~lL~~~--------~~~~~~~~a~~~L~~L~~~--~~~r~~~~~~~~i~~Lv~l 1366 (2100)
.+...... ....+.++..+... .++.....+.+.++.+... +..+ ..++.++..
T Consensus 760 ~~l~~~~~~---------~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~------~~~~~~~~~ 824 (1230)
T 1u6g_C 760 QALVVTGTN---------NLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGP------AVVGQFIQD 824 (1230)
T ss_dssp HHHHTTCCT---------TCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSH------HHHTTTTTT
T ss_pred HHHHhcCCC---------CCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhhH------HHHHHHHHH
Confidence 22211110 01234444433211 1234456666777766432 2111 123334444
Q ss_pred Hhc--CCchHHHHHHHHHHHhcccHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCchhhHHHHhcCcHH
Q 000133 1367 LVT--EFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIE 1444 (2100)
Q Consensus 1367 L~~--~~~~~~~~A~~aL~~L~~~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k~~i~~~~~i~ 1444 (2100)
+++ .++..+..++..|..+....... ...+.++.++..|.+.++.||.+|..+|+.++..+. . ..++
T Consensus 825 ~~~~~~~~~~~~~~l~~l~~~g~~~~~~---~~~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~~~~---~-----~~lp 893 (1230)
T 1u6g_C 825 VKNSRSTDSIRLLALLSLGEVGHHIDLS---GQLELKSVILEAFSSPSEEVKSAASYALGSISVGNL---P-----EYLP 893 (1230)
T ss_dssp TTTTTCCHHHHHHHHHHHHHHHHHSCCC---SCTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHTH---H-----HHHH
T ss_pred hCCCCccHHHHHHHHHHHHHhcccCCCc---ccccHHHHHHHHhCCCCHHHHHHHHHHhHHHhccCH---H-----HHHH
Confidence 544 34555666766766653200000 001246788899999999999999999999985431 1 1477
Q ss_pred HHHHHhccCChhHHHHHHHHHHHHHhccCCcccccccCchHHHHHHhccCC--CCchhHhHHHHHHHHhhcCCCcccccc
Q 000133 1445 SVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSE--FGPDGQHSALQVLVNILEHPQCRADYS 1522 (2100)
Q Consensus 1445 ~lv~~L~~~~~~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~--~~~~~~~~A~~~L~nL~~~~~~~~~~~ 1522 (2100)
.+++.+..+ ...+......+.+....... .......+.++..|-..- .+..++..+.++|+.|...
T Consensus 894 ~ll~~l~~~-~~~~~~~l~al~e~i~~~~~---~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~-------- 961 (1230)
T 1u6g_C 894 FVLQEITSQ-PKRQYLLLHSLKEIISSASV---VGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLI-------- 961 (1230)
T ss_dssp HHHHHHHSC-GGGHHHHHHHHHHHHHSSCS---TTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHS--------
T ss_pred HHHHHHhcc-chhhHHHHHHHHHHHhcCCh---hhHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhcc--------
Confidence 888888765 34455555566565543211 111112233433332221 2255677789999988533
Q ss_pred cccCCChHhhhhccCCCCHHHHHHHHHHHHHhhccccccccccccCchHHHHHHhccCCHHHHHHHHHHHHHhhcCChhH
Q 000133 1523 LTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNE 1602 (2100)
Q Consensus 1523 ~~~~~~l~~Lv~~L~~~~~~vq~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~lL~s~~~~vr~~Al~AL~~Ls~~~~n~ 1602 (2100)
.....++.|...+.+.++.+|..++.++..+.........-.-...+++|+..|++.+.++|+.|+.+|..++...+..
T Consensus 962 -~~~~l~p~l~~~l~~~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 1040 (1230)
T 1u6g_C 962 -DPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSL 1040 (1230)
T ss_dssp -SGGGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGG
T ss_pred -ChHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcChHh
Confidence 2356788899999999999998898888887542111100011134477788889999999999999999999776652
Q ss_pred HHh--ccChHHHHHHhcccCC--------------CchHHHHHHHHHHHHhhhcccch-hhhcccHHHHHHHhhcCCHHH
Q 000133 1603 IAK--EGGVTELSKIILQADP--------------SLPHALWESAASVLSSILQFSSE-FYLEVPVAVLVRLLRSGSEGT 1665 (2100)
Q Consensus 1603 l~~--~G~i~~Ll~lL~~~~~--------------~~~~~l~e~a~~~L~~i~~~~~~-~~~~~~v~~Lv~ll~~~~~~~ 1665 (2100)
+.. ...+|.|++.+...++ +-...+++.|...+..+...... +...+.++.++.-+.. +.++
T Consensus 1041 ~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i~~~~~~~~~~~gl~d-~~di 1119 (1230)
T 1u6g_C 1041 IRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKD-HYDI 1119 (1230)
T ss_dssp TGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHTTSS-CHHH
T ss_pred HHHHHHHHHHHHHHHhcccHHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcccCc-hHHH
Confidence 211 1245555544422111 00114666677777777654322 1112234455555555 3778
Q ss_pred HHHHHHHHHHhccCChh
Q 000133 1666 VIGSLNALLVLESDDGT 1682 (2100)
Q Consensus 1666 ~~~a~~aL~~L~~~~~~ 1682 (2100)
+.-+...|..|....+.
T Consensus 1120 ~~~~~~~l~~l~~~~~~ 1136 (1230)
T 1u6g_C 1120 KMLTFLMLVRLSTLCPS 1136 (1230)
T ss_dssp HHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHHHHHHhcCHH
Confidence 88888888877665543
No 35
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.86 E-value=7.5e-20 Score=256.60 Aligned_cols=708 Identities=13% Similarity=0.077 Sum_probs=462.6
Q ss_pred hHHHHHHH---hcCCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhh---cCCCHHHHHHHHHHHHHHhccCCCC
Q 000133 56 VPVLVSLL---RSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLL---KSSSAEGQIAAAKTIYAVSQGGAKD 129 (2100)
Q Consensus 56 v~~L~~lL---~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL---~s~~~~~~~~A~~aL~~Ls~~~~~~ 129 (2100)
+..|..+| .+++.++|..|-..|..+...+ +..+.|..++ .+.+..+|..|+..|+|.-.. .
T Consensus 12 ~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~p---------~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~---~ 79 (852)
T 4fdd_A 12 LQQILQLLKESQSPDTTIQRTVQQKLEQLNQYP---------DFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKA---H 79 (852)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTSH---------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTT---S
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHhCC---------CHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHH---c
Confidence 44445554 4678889999999998774433 2233444444 466788999999999987652 1
Q ss_pred cccccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCC-hhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHH
Q 000133 130 YVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTST-EGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFL 208 (2100)
Q Consensus 130 ~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~-~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~ 208 (2100)
-..-..-.+..+-+.++..|.+ .++.++..+..++..++... +..|. +.++.|++++.++++.++..+..+
T Consensus 80 w~~~~~~~~~~ik~~ll~~l~~---~~~~vr~~~a~~i~~ia~~~~~~~wp-----~ll~~L~~~l~~~~~~~r~~al~~ 151 (852)
T 4fdd_A 80 FQNFPNGVTDFIKSECLNNIGD---SSPLIRATVGILITTIASKGELQNWP-----DLLPKLCSLLDSEDYNTCEGAFGA 151 (852)
T ss_dssp GGGCCHHHHHHHHHHHHTTTTC---SSHHHHHHHHHHHHHHHHHTTTTTCT-----THHHHHHHHHSCSSHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHHHhcCccccH-----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1000001223334445555543 44568888888888887432 33444 458899999999999999999999
Q ss_pred HHHHhhcCcchhhH-H---hhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCc
Q 000133 209 LACMMEEDVSVCSR-V---LAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSK 284 (2100)
Q Consensus 209 L~~L~~~~~~~~~~-i---~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~ 284 (2100)
|..++...+..... . .-...++.|++.+++. +.++|..|+++|.++....+..-... -...++.++.++.+++
T Consensus 152 L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~-~~~vR~~A~~aL~~~~~~~~~~~~~~-~~~~l~~l~~~~~d~~- 228 (852)
T 4fdd_A 152 LQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHS-SPKIRSHAVACVNQFIISRTQALMLH-IDSFIENLFALAGDEE- 228 (852)
T ss_dssp HHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCS-SHHHHHHHHHHHHTTTTTTCHHHHTS-HHHHHHHHHHHHTCCC-
T ss_pred HHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHHHHcCCCC-
Confidence 99888543322111 0 0234677777777754 47899999999998876433211000 1134667777765543
Q ss_pred chhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHH
Q 000133 285 EFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLV 364 (2100)
Q Consensus 285 e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv 364 (2100)
..++..++.+|.++....+..+. . .-..+.+.+.
T Consensus 229 --------~~vr~~a~~~L~~l~~~~~~~~~----------------~----------------------~l~~l~~~l~ 262 (852)
T 4fdd_A 229 --------PEVRKNVCRALVMLLEVRMDRLL----------------P----------------------HMHNIVEYML 262 (852)
T ss_dssp --------HHHHHHHHHHHHHHHHHCHHHHG----------------G----------------------GHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHhCHHHHH----------------H----------------------HHHHHHHHHH
Confidence 67889999999887752211100 0 0013455566
Q ss_pred hhcCCCCChHHHHHHHHHHHHHhCCCccchhhhc--cccHHHHHHhh-----------cC-----------CCHHHHHHH
Q 000133 365 NQFKPRLPFLVQERTIEALASLYGNPLLSIKLEN--SEAKRLLVGLI-----------TM-----------ATNEVQEEL 420 (2100)
Q Consensus 365 ~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~--~g~i~~Lv~lL-----------~~-----------~~~~v~~~A 420 (2100)
.++++. ++.++..|++.+..+...+..+..+.. ...++.++..+ .+ .+..++..|
T Consensus 263 ~~~~~~-~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a 341 (852)
T 4fdd_A 263 QRTQDQ-DENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCS 341 (852)
T ss_dssp HHHTCS-SHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHH
T ss_pred HHccCC-cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHH
Confidence 666653 456899999999988765543332211 13355666665 22 223468899
Q ss_pred HHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHH
Q 000133 421 VRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKA 500 (2100)
Q Consensus 421 ~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v 500 (2100)
+.+|..++...++. +.. ..++.+..++.++++.+|+.|+++|++++.+..+. ....-.+.++.|+.++.++++.+
T Consensus 342 ~~~L~~la~~~~~~---~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~-~~~~l~~~l~~l~~~l~d~~~~V 416 (852)
T 4fdd_A 342 AAALDVLANVYRDE---LLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQG-MIPYLPELIPHLIQCLSDKKALV 416 (852)
T ss_dssp HHHHHHHHHHHGGG---GHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHH-HGGGHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHhccHH---HHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHH-HHHHHHHHHHHHHHHcCCCCHHH
Confidence 99999998764321 111 45788888899999999999999999999654432 11233457899999999999999
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC-------CcHHHHHHHhhcCC
Q 000133 501 KEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT-------ATISQLTALLTSDL 573 (2100)
Q Consensus 501 re~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~-------~~i~~L~~lL~~~~ 573 (2100)
|..|+|+|++++...+.......-.+.++.|+..+++.++.+++.|+++|.+++....+ ..++.|+..+.+..
T Consensus 417 r~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~ 496 (852)
T 4fdd_A 417 RSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQ 496 (852)
T ss_dssp HHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhC
Confidence 99999999999863211100001134778999999999999999999999999864322 45666777777666
Q ss_pred cchHHHHHHHHHHHHhccC----chhHHHHhhhccchHHHHHH---HhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc
Q 000133 574 PESKVYVLDALKSMLSVVS----FSDILREGSAANDAVETMIK---ILSSTKEETQAKSASALAGIFETRKDLRESSIAV 646 (2100)
Q Consensus 574 ~~~~~~a~~aL~~l~~~~~----~~~~~~~~i~~~~~i~~Lv~---lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~ 646 (2100)
.+....+.++++.++.... .++.+. ..+|.+++ .+.+.+++++ .+..++..++..-.... .....
T Consensus 497 ~~~~~~~~~ai~~l~~~~~~~~~~~~~~~------~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~-~~~~~ 568 (852)
T 4fdd_A 497 HKNLLILYDAIGTLADSVGHHLNKPEYIQ------MLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGF-LPYCE 568 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGCCHHHHH------HHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGG-HHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhhhhccHHHHH------HHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhH-HHHHH
Confidence 6666667788887764322 112121 22566664 3445666664 78888888876422211 11112
Q ss_pred CchHHHHHhhc-----------------CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHH
Q 000133 647 KTLWSVMKLLD-----------------VGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQ 709 (2100)
Q Consensus 647 g~v~~Lv~lL~-----------------~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~ 709 (2100)
.+++.++.++. .++.+.+..++.+++.++......-+..+.+.+.++.+...+.++++++|+.
T Consensus 569 ~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~ 648 (852)
T 4fdd_A 569 PVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQS 648 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHH
Confidence 23444444432 2255688889999999976554333332335788999999999999999999
Q ss_pred HHHHHHHHhcC-cHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhc
Q 000133 710 ATCALANLILD-SEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESA 788 (2100)
Q Consensus 710 aa~aL~~L~~~-~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~ 788 (2100)
+..+++.++.. ++....++ ..+++.+.+.+..+...++.+|+|++..+....+. .+.. .....++.+++.+++.
T Consensus 649 a~~~l~~l~~~~~~~~~~~l-~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~--~~~p--~~~~il~~L~~~l~~~ 723 (852)
T 4fdd_A 649 SFALLGDLTKACFQHVKPCI-ADFMPILGTNLNPEFISVCNNATWAIGEISIQMGI--EMQP--YIPMVLHQLVEIINRP 723 (852)
T ss_dssp HHHHHHHHHHHCGGGTGGGH-HHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGG--GGGG--GTHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhH--hHHH--HHHHHHHHHHHHhCCC
Confidence 99999999833 33333333 34888899999777778999999999999875543 2333 2256788889988875
Q ss_pred c-cccchHhHHHHHHHHHHcCCCCCCCCcccceeeccCCCchhhhhhhcc-CChhHHHHHHHHHHHHhcCCcc
Q 000133 789 S-GSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIAD-ATPLLQDKAIEILSRLCRDQPA 859 (2100)
Q Consensus 789 ~-~~v~~~~al~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~-~~~~~~~~a~~~L~~L~~~~~~ 859 (2100)
+ .....+++..++..+...... +..| -++..+.++.+.|.. ++..-++.+++.|..+..-+|.
T Consensus 724 ~~~~~~~~~a~~~igrl~~~~~~--~~~~------~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~ 788 (852)
T 4fdd_A 724 NTPKTLLENTAITIGRLGYVCPQ--EVAP------MLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPS 788 (852)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCHH--HHGG------GHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGG
T ss_pred CCCchHHHHHHHHHHHHHHhCHH--HhCc------cHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChH
Confidence 4 333448899999999766432 1111 245677888888876 4566799999999888555554
No 36
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.85 E-value=1.9e-20 Score=222.33 Aligned_cols=239 Identities=22% Similarity=0.244 Sum_probs=216.0
Q ss_pred CcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 000133 442 EGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRAC 521 (2100)
Q Consensus 442 g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~ 521 (2100)
...+.++..|.+++++++..|+++|+++....++.+..+.+.|+++.|+++|.+++++++..|+++|.+++..+++.+..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 45899999999999999999999998876556778889999999999999999999999999999999999888999999
Q ss_pred HHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhh
Q 000133 522 VESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGS 601 (2100)
Q Consensus 522 i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i 601 (2100)
+.+.|+++.|+++|+++++.+++.|+++|++++...+. ....+
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-------------------------------------~~~~~ 134 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE-------------------------------------QIQAV 134 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH-------------------------------------HHHHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCch-------------------------------------HHHHH
Confidence 99999999999999999999999999999999763321 11234
Q ss_pred hccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchh
Q 000133 602 AANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVREN 681 (2100)
Q Consensus 602 ~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~ 681 (2100)
...++++.|+++|.++++.+++.|+++|++++.++++....+...|++|.|+.++.++++.++..++.+|++++.+.+ .
T Consensus 135 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~ 213 (252)
T 4db8_A 135 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-E 213 (252)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCH-H
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCH-H
Confidence 567889999999999999999999999999999888888889999999999999999999999999999999986654 4
Q ss_pred HHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 000133 682 REVAAVARDALSPLVVLAGSPVLEVAEQATCALANLI 718 (2100)
Q Consensus 682 ~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~ 718 (2100)
++..+.+.|+++.|++++.++++++|+.|+++|+||+
T Consensus 214 ~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 214 QKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 5555889999999999999999999999999999986
No 37
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.85 E-value=1.1e-18 Score=234.56 Aligned_cols=567 Identities=12% Similarity=0.094 Sum_probs=402.8
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCChh
Q 000133 97 IPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEG 176 (2100)
Q Consensus 97 i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~ 176 (2100)
+..|+..|++++.+.|..|+.+|..+... . +.. -....++|.|...+ ..++.++..+..+|..++.....
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~----~-~~~-~~~~~l~~~L~~~~----d~~~~vr~~~~~~L~~~~~~~~~ 81 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALA----L-GVE-RTRSELLPFLTDTI----YDEDEVLLALAEQLGTFTTLVGG 81 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHH----S-CHH-HHHHTHHHHHHHTC----CCCHHHHHHHHHHHTTCSGGGTS
T ss_pred HHHHHHHhhcccHHHHHHHHHhHHHHHHH----h-CHH-HHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHHHhccCc
Confidence 67888999999999999999999887751 0 110 11123455554433 34456888888889887642111
Q ss_pred hHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q 000133 177 FWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLS 256 (2100)
Q Consensus 177 ~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls 256 (2100)
. -.....++.|..++.++++.+|..|+.+|.+++...+. .......++.+.++..+ ++...|..|+.+|..++
T Consensus 82 ~---~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~---~~~~~~l~~~l~~l~~~-~~~~~R~~a~~~l~~~~ 154 (588)
T 1b3u_A 82 P---EYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSP---SDLEAHFVPLVKRLAGG-DWFTSRTSACGLFSVCY 154 (588)
T ss_dssp G---GGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCH---HHHHHTHHHHHHHHHTC-SSHHHHHHHGGGHHHHT
T ss_pred H---HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHH
Confidence 1 11234577888888889999999999999999865542 12223346666666655 45689999999999987
Q ss_pred cCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhh
Q 000133 257 DHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGA 336 (2100)
Q Consensus 257 ~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~ga 336 (2100)
...++. . ....++.+..++.+++ ..++..++.+|.+++..... ...
T Consensus 155 ~~~~~~---~-~~~l~~~l~~l~~d~~---------~~VR~~a~~~l~~l~~~~~~---------------~~~------ 200 (588)
T 1b3u_A 155 PRVSSA---V-KAELRQYFRNLCSDDT---------PMVRRAAASKLGEFAKVLEL---------------DNV------ 200 (588)
T ss_dssp TTSCHH---H-HHHHHHHHHHHHTCSC---------HHHHHHHHHHHHHHHHTSCH---------------HHH------
T ss_pred HhcCHH---H-HHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHHHHHhcH---------------HhH------
Confidence 643321 1 1223566667765543 67889999999877642110 000
Q ss_pred hHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCC-CccchhhhccccHHHHHHhhcCCCHH
Q 000133 337 LASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGN-PLLSIKLENSEAKRLLVGLITMATNE 415 (2100)
Q Consensus 337 l~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~-~~~~~~l~~~g~i~~Lv~lL~~~~~~ 415 (2100)
...+.+.+..++.... ..+|..|+.++..++.. +. .......++.+..+++++++.
T Consensus 201 -------------------~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~~d~~~~ 257 (588)
T 1b3u_A 201 -------------------KSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQ---EDLEALVMPTLRQAAEDKSWR 257 (588)
T ss_dssp -------------------HHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCH---HHHHHHTHHHHHHHHTCSSHH
T ss_pred -------------------HHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHccCCCHH
Confidence 0135566666666543 56899999999988432 21 111223577788888889999
Q ss_pred HHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCccc-HHHHHhcCChHHHHHhcc
Q 000133 416 VQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDS-KWAITAAGGIPPLVQILE 494 (2100)
Q Consensus 416 v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~-~~~i~~~g~i~~Lv~lL~ 494 (2100)
+|..++.+|..++..... .......++.++.+++++++.++..|+.+|..++...... +........+|.+..++.
T Consensus 258 vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~ 334 (588)
T 1b3u_A 258 VRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVS 334 (588)
T ss_dssp HHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhc
Confidence 999999999999864222 1122356899999999999999999999999997643322 211233456788999999
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC-----CCcHHHHHHHh
Q 000133 495 SGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD-----TATISQLTALL 569 (2100)
Q Consensus 495 ~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~-----~~~i~~L~~lL 569 (2100)
+.++.+|..++++|..++..... .. .....+|.+..++++.++.++..+..+|..++.... +..+|.+..++
T Consensus 335 d~~~~vR~~a~~~l~~l~~~~~~--~~-~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~ 411 (588)
T 1b3u_A 335 DANQHVKSALASVIMGLSPILGK--DN-TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELA 411 (588)
T ss_dssp CSCHHHHHHHHTTGGGGHHHHCH--HH-HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhhH--hH-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Confidence 99999999999999998753111 11 123478999999999999999999999988876432 24677888888
Q ss_pred hcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCch
Q 000133 570 TSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTL 649 (2100)
Q Consensus 570 ~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v 649 (2100)
.+.++.+|..+..+++.++...+... .....+|.+..++.+++..+|+.|+.++..++..... .......+
T Consensus 412 ~d~~~~vr~~~~~~l~~l~~~~~~~~------~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~ll 482 (588)
T 1b3u_A 412 EDAKWRVRLAIIEYMPLLAGQLGVEF------FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK---EWAHATII 482 (588)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHCGGG------CCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHTH
T ss_pred cCCCchHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc---hhHHHHHH
Confidence 88899999999999998876433211 1223478899999999999999999999999864221 12234678
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcC-cHHHHHHH
Q 000133 650 WSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD-SEVSEKAI 728 (2100)
Q Consensus 650 ~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~-~~~~~~~v 728 (2100)
|.|..++.+.+..++..++.+++.++..... . ......++.|.+++.++++++|..++++|+.+... .+ .+.
T Consensus 483 p~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~---~-~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~ 555 (588)
T 1b3u_A 483 PKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ---D-ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN---STL 555 (588)
T ss_dssp HHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH---H-HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH---HHH
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHHHhcCH---H-HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch---hhh
Confidence 9999999999999999999999999654221 1 23356899999999999999999999999999842 22 123
Q ss_pred HcCcHHHHHHHHccCChhHHHHHHHHHHHHH
Q 000133 729 AEEIILPATRVLCEGTISGKTLAAAAIARLL 759 (2100)
Q Consensus 729 ~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~ 759 (2100)
.+.+++.|.+++.+.+..+|..|..+|..+.
T Consensus 556 ~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 556 QSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 3577888888888888889999999997653
No 38
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.85 E-value=3.5e-18 Score=229.68 Aligned_cols=575 Identities=13% Similarity=0.068 Sum_probs=393.3
Q ss_pred chhHHHHHHHHHHHHccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhcCCHHHHHHHHHHHHhhhcc
Q 000133 5 DGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKE 84 (2100)
Q Consensus 5 ~~~~~~v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~ 84 (2100)
+.+...+..+++.++. .++..|..|...|..++..-...+. ....+|.|...+ ++++++|..++..|+.++..
T Consensus 6 ~~~~~~i~~l~~~l~s--~~~~~R~~A~~~l~~i~~~~~~~~~----~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~ 78 (588)
T 1b3u_A 6 DDSLYPIAVLIDELRN--EDVQLRLNSIKKLSTIALALGVERT----RSELLPFLTDTI-YDEDEVLLALAEQLGTFTTL 78 (588)
T ss_dssp TTSSHHHHHHHHHTTC--SCHHHHHHHHHTHHHHHHHSCHHHH----HHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGG
T ss_pred CCCcCcHHHHHHHhhc--ccHHHHHHHHHhHHHHHHHhCHHHH----HHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhc
Confidence 3445668888887764 4567888898888877653211110 113456665555 67889999999999988743
Q ss_pred chhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHHHHHH
Q 000133 85 NELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLT 164 (2100)
Q Consensus 85 ~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~ 164 (2100)
-... -.....+|.|..++.+++..+|..|..+|.++..... + .....-.+|.+..+..+ .+..++..+.
T Consensus 79 ~~~~--~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~-~-----~~~~~~l~~~l~~l~~~---~~~~~R~~a~ 147 (588)
T 1b3u_A 79 VGGP--EYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHS-P-----SDLEAHFVPLVKRLAGG---DWFTSRTSAC 147 (588)
T ss_dssp GTSG--GGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSC-H-----HHHHHTHHHHHHHHHTC---SSHHHHHHHG
T ss_pred cCcH--HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCC-H-----HHHHHHHHHHHHHHhcC---CCcHHHHHHH
Confidence 1110 0112346777777788899999999999999987211 1 11222345555554433 2345677777
Q ss_pred HHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHH
Q 000133 165 GALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASV 244 (2100)
Q Consensus 165 ~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v 244 (2100)
.++..++...+.. + ....++.+..++.++++.+|..++.+|..++...+. .......+|.|..++.+++ ..+
T Consensus 148 ~~l~~~~~~~~~~---~-~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~-~~v 219 (588)
T 1b3u_A 148 GLFSVCYPRVSSA---V-KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASDEQ-DSV 219 (588)
T ss_dssp GGHHHHTTTSCHH---H-HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTCSC-HHH
T ss_pred HHHHHHHHhcCHH---H-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH---HhHHHHHHHHHHHHhcCCc-HHH
Confidence 7777776443322 1 123577888888999999999999999988865442 2233566888888887654 689
Q ss_pred HHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCC
Q 000133 245 RAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESC 324 (2100)
Q Consensus 245 ~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~ 324 (2100)
|..|+.+|..++...+.. ......+|.+..++.+++ ..+
T Consensus 220 r~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~---------~~v----------------------------- 258 (588)
T 1b3u_A 220 RLLAVEACVNIAQLLPQE---DLEALVMPTLRQAAEDKS---------WRV----------------------------- 258 (588)
T ss_dssp HTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHHHTCSS---------HHH-----------------------------
T ss_pred HHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHccCCC---------HHH-----------------------------
Confidence 999999998887532211 111123444444443221 233
Q ss_pred CChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHH
Q 000133 325 SSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRL 404 (2100)
Q Consensus 325 ~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~ 404 (2100)
|..++.++..+..... ........++.
T Consensus 259 ---------------------------------------------------R~~a~~~l~~l~~~~~--~~~~~~~l~~~ 285 (588)
T 1b3u_A 259 ---------------------------------------------------RYMVADKFTELQKAVG--PEITKTDLVPA 285 (588)
T ss_dssp ---------------------------------------------------HHHHHHTHHHHHHHHC--HHHHHHTHHHH
T ss_pred ---------------------------------------------------HHHHHHHHHHHHHHhC--cccchhHHHHH
Confidence 4444444444421100 00011234677
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhccCccc-hHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhc
Q 000133 405 LVGLITMATNEVQEELVRALLKLCNNEGSL-WRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAA 483 (2100)
Q Consensus 405 Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~-~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~ 483 (2100)
++.+++++++.+|..|+.+|..++...+.. .........+|.+..+++++++.+|..++++|..++..... . ....
T Consensus 286 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~--~-~~~~ 362 (588)
T 1b3u_A 286 FQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK--D-NTIE 362 (588)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH--H-HHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH--h-HHHH
Confidence 888888899999999999999998764332 11111235678899999999999999999999999742111 1 1123
Q ss_pred CChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCC-----C
Q 000133 484 GGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKS-----D 558 (2100)
Q Consensus 484 g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~-----~ 558 (2100)
..+|.+..++++.++++|..++.+|..++....... .....+|.|..++++.+++++..++.+|..++..- .
T Consensus 363 ~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~---~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~ 439 (588)
T 1b3u_A 363 HLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQ---LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFD 439 (588)
T ss_dssp HTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHH---HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCC
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHH
Confidence 478899999999999999999999998875322111 12346789999999999999999999999987532 2
Q ss_pred CCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChh
Q 000133 559 TATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKD 638 (2100)
Q Consensus 559 ~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~ 638 (2100)
+..+|.+..++.++++.+|..+..+++.+....+... .. ...+|.|..++.+.+..+|..+++++..++..-.
T Consensus 440 ~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~-~~-----~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~- 512 (588)
T 1b3u_A 440 EKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW-AH-----ATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG- 512 (588)
T ss_dssp HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHH-HH-----HHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchh-HH-----HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcC-
Confidence 3467788888999999999999999999887654332 11 2348888888889999999999999999986421
Q ss_pred hHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 000133 639 LRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLI 718 (2100)
Q Consensus 639 ~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~ 718 (2100)
........+|.|.+++.++++.++..++.+++.++...... +.....+|.|.+++.++++++|..|+.||..+.
T Consensus 513 --~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~----~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 513 --QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS----TLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp --HHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH----HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchh----hhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 22334568999999999999999999999999997654321 223456788888889999999999999998763
No 39
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.80 E-value=8.6e-17 Score=227.08 Aligned_cols=755 Identities=11% Similarity=0.045 Sum_probs=456.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhhcCC--CHHHHHHHHHHHHHHhccCCCCccc---
Q 000133 58 VLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSS--SAEGQIAAAKTIYAVSQGGAKDYVG--- 132 (2100)
Q Consensus 58 ~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~s~--~~~~~~~A~~aL~~Ls~~~~~~~~~--- 132 (2100)
.++..+.+++.++|..|...|..+..++ ..+.++.|+..+.++ +..+|..|+..|++.... ....
T Consensus 5 ~~L~~~~s~d~~~r~~A~~~L~~~~~~~-------~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~---~~~~~~~ 74 (876)
T 1qgr_A 5 TILEKTVSPDRLELEAAQKFLERAAVEN-------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTS---KDPDIKA 74 (876)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCC---SSHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcC-------hhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccc---cchHhHH
Confidence 3455566788899999999998875421 124577788888764 578899999999986531 1000
Q ss_pred --ccch------hccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCC--hhhHHHHHhcCCHHHHHHhHccC--CHH
Q 000133 133 --SKIF------STEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTST--EGFWAATVQAGGIDILVKLLTLG--QSS 200 (2100)
Q Consensus 133 --~~~~------~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~--~~~~~~i~~~g~v~~Lv~lL~s~--~~~ 200 (2100)
...+ ....+-+.+++.|.+.. +.+ ..+..++..++... ...|. ..++.++..+.++ ++.
T Consensus 75 ~~~~~w~~l~~~~~~~ik~~ll~~l~~~~---~~~-~~~~~~l~~i~~~~~~~~~w~-----~ll~~l~~~l~~~~~~~~ 145 (876)
T 1qgr_A 75 QYQQRWLAIDANARREVKNYVLHTLGTET---YRP-SSASQCVAGIACAEIPVNQWP-----ELIPQLVANVTNPNSTEH 145 (876)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHTTTCC---SSS-CHHHHHHHHHHHHHGGGTCCT-----THHHHHHHHHHCTTCCHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHhCCCc---HHH-HHHHHHHHHHHHhhCcccccH-----HHHHHHHHHHhCCCCCHH
Confidence 0001 11122333666665432 224 45666666665321 13343 4578999999998 899
Q ss_pred HHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCC-CHHHHHHHHHHHHHhhcCChHhH-HHHHhCCChHHHHHh
Q 000133 201 TQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGN-EASVRAEAAGALKSLSDHCKDAR-REIAGSNGIPAMINA 278 (2100)
Q Consensus 201 v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~v~~~Aa~aL~~Ls~~~~~~~-~~i~~~g~i~~Lv~l 278 (2100)
++..+..+|..++.......-.-.-...++.+.+.+..+. +.++|..|..+|.++...-...- ........++.+...
T Consensus 146 ~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~ 225 (876)
T 1qgr_A 146 MKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEA 225 (876)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999999999888542111111122456778888888763 46899999999999875322110 000001134555555
Q ss_pred hcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchh
Q 000133 279 TIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLI 358 (2100)
Q Consensus 279 l~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~ 358 (2100)
+... +..++..++.+|..+.......+ ...+. ..
T Consensus 226 ~~~~---------~~~vr~~a~~~l~~l~~~~~~~~------------~~~~~-------------------------~~ 259 (876)
T 1qgr_A 226 TQCP---------DTRVRVAALQNLVKIMSLYYQYM------------ETYMG-------------------------PA 259 (876)
T ss_dssp TTCS---------SHHHHHHHHHHHHHHHHHSGGGC------------HHHHT-------------------------TT
T ss_pred cCCC---------CHHHHHHHHHHHHHHHHHhHHHH------------HHHHH-------------------------HH
Confidence 5433 25677888888887664211000 00000 02
Q ss_pred hHHHHHhhcCCCCChHHHHHHHHHHHHHhCCC-----------------c--cchhhh--ccccHHHHHHhhc-------
Q 000133 359 VEQTLVNQFKPRLPFLVQERTIEALASLYGNP-----------------L--LSIKLE--NSEAKRLLVGLIT------- 410 (2100)
Q Consensus 359 i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~-----------------~--~~~~l~--~~g~i~~Lv~lL~------- 410 (2100)
+.+.+...+.. .++.++..+.+.+..+.... . ...... -...++.++..+.
T Consensus 260 l~~~~~~~~~~-~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~ 338 (876)
T 1qgr_A 260 LFAITIEAMKS-DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDD 338 (876)
T ss_dssp HHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCC
T ss_pred HHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhccccccc
Confidence 33444444433 33456777777777663221 0 000100 0234556667664
Q ss_pred CCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCc-ccHHHHHhcCChHHH
Q 000133 411 MATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNEND-DSKWAITAAGGIPPL 489 (2100)
Q Consensus 411 ~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~-~~~~~i~~~g~i~~L 489 (2100)
+.++.+|..|..+|..++...++ .+.. ..++.+...+.++++.+|+.|+.+|+.++.+.. +.... .-...+|.|
T Consensus 339 ~~~~~~r~~a~~~l~~l~~~~~~---~~~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~-~~~~~l~~l 413 (876)
T 1qgr_A 339 DDDWNPCKAAGVCLMLLATCCED---DIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTL 413 (876)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHGG---GGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHH-HHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHCcH---hhHH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHH
Confidence 23567899999999998876432 1111 456777788889999999999999999986443 22222 234478999
Q ss_pred HHhccCCCHHHHHHHHHHHHHHhcCChhh---HHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC--------
Q 000133 490 VQILESGSAKAKEDSASILRNLCNHSEDI---RACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD-------- 558 (2100)
Q Consensus 490 v~lL~~~~~~vre~A~~aL~~L~~~~~~~---~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~-------- 558 (2100)
+..+.++++.+|..|+++|.+++...+.. ...+ ...++.|+..+++. ++++..++++|.+++....
T Consensus 414 ~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l--~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~ 490 (876)
T 1qgr_A 414 IELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL--APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADD 490 (876)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH--HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTS
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH--HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccc
Confidence 99999999999999999999999753321 1111 24678888888875 8899999999999885411
Q ss_pred -------------CCcHHHHHHHhhcC---CcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcC------
Q 000133 559 -------------TATISQLTALLTSD---LPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSS------ 616 (2100)
Q Consensus 559 -------------~~~i~~L~~lL~~~---~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s------ 616 (2100)
+..++.|...+.+. ...+|..+.++++.+....+... ...+ ...++.++..+..
T Consensus 491 ~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~--~~~~--~~l~~~l~~~l~~~~~~~~ 566 (876)
T 1qgr_A 491 QEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDC--YPAV--QKTTLVIMERLQQVLQMES 566 (876)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTT--HHHH--HHHHHHHHHHHHHHHTTTT
T ss_pred cccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhh--HHHH--HHHHHHHHHHHHHHHHHHh
Confidence 13456666666654 35688889999998887654321 1111 1235666655432
Q ss_pred ----C-C----HHHHHHHHHHHHHHhcCCh-hhHHHHHhcCchHHHHHhhcCCC--HHHHHHHHHHHHHHhcCCchhHHH
Q 000133 617 ----T-K----EETQAKSASALAGIFETRK-DLRESSIAVKTLWSVMKLLDVGS--ECILVEASRCLAAIFLSVRENREV 684 (2100)
Q Consensus 617 ----~-~----~~~~~~Aa~aL~~L~~~~~-~~~~~~~~~g~v~~Lv~lL~~~~--~~v~~~aa~aL~~L~~~~~~~~~~ 684 (2100)
. + ++++..++.++..++..-. +.. ......++|.++.++.+.+ ..++..++.+++.++.........
T Consensus 567 ~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~ 645 (876)
T 1qgr_A 567 HIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDA-LQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLK 645 (876)
T ss_dssp SCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHH-HTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhh-hHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHH
Confidence 2 2 4577889999999987643 211 1223457888888887764 367889999999987643221100
Q ss_pred HHHhCCChHHHHHHhCCC-CHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHcc--CChhHHHHHHHHHHHHHhc
Q 000133 685 AAVARDALSPLVVLAGSP-VLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCE--GTISGKTLAAAAIARLLHS 761 (2100)
Q Consensus 685 ~~~~~~~l~~Lv~ll~~~-~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~--~~~~~~~~Aa~aL~~l~~~ 761 (2100)
.. ...++.|...+.+. ++++|..+.++++.|+.............+++.+.+.+.+ .+.+++..+.+++.++...
T Consensus 646 -~~-~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~ 723 (876)
T 1qgr_A 646 -YM-EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALA 723 (876)
T ss_dssp -GH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHH
T ss_pred -HH-HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHH
Confidence 11 23677788888876 8999999999999998332112222346888999999987 3456999999999999874
Q ss_pred CccchhHhhhhhccCcHHHHHHhhhhcc----c------ccchHhHHHHHHHHHHcCCCC-CCCCc-ccceeeccCCCch
Q 000133 762 RKIDYTITDCVNRAGTVLALVSFLESAS----G------SVATSEALDALAILSRSGGAS-GHVKP-AWQVLAEFPKSIT 829 (2100)
Q Consensus 762 ~~~~~~~~~~~~~~g~l~~li~~l~s~~----~------~v~~~~al~~L~~L~~~~~~~-~~~~~-~~~~~~~~~~~l~ 829 (2100)
.+.. +..+ ....++.+.+.++... + ...++.++.++..+++..... ....+ .....-..+..+.
T Consensus 724 ~g~~--~~~~--l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~ 799 (876)
T 1qgr_A 724 IGGE--FKKY--LEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILS 799 (876)
T ss_dssp HGGG--GGGG--HHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHH
T ss_pred hchh--HHHH--HHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHH
Confidence 4332 2221 1334555555554321 0 022255667776665432210 00000 0011111223333
Q ss_pred hhhhhhccC--ChhHHHHHHHHHHHHhcCCcccchh-cccc--cccchHHHHHHHhhcCCcceecchhhHHHHHhhh
Q 000133 830 PIVSSIADA--TPLLQDKAIEILSRLCRDQPAVLGD-EVTG--ASGCISSIARRVISCTNPKVKIGGAALLICAAKV 901 (2100)
Q Consensus 830 ~L~~~l~~~--~~~~~~~a~~~L~~L~~~~~~~~g~-~~~~--~~~~~~~~~~~~l~s~~~~~r~~~~~~~~~~~~~ 901 (2100)
.+.+...+. ++.+|..|..+|..|+... |. .+.. ...+...++...+.|+++++|..|+|++..++|.
T Consensus 800 ~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~----~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~~ 872 (876)
T 1qgr_A 800 FIDHIAGDEDHTDGVVACAAGLIGDLCTAF----GKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRKL 872 (876)
T ss_dssp HHHHHHTCSCCCHHHHHHHHHHHHHHHHHH----CTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHh----CcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHHh
Confidence 333333555 6799999999998884321 11 1110 1223334555477799999999999999999987
No 40
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.79 E-value=2.6e-18 Score=197.62 Aligned_cols=199 Identities=19% Similarity=0.251 Sum_probs=181.5
Q ss_pred cccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHH
Q 000133 399 SEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKW 478 (2100)
Q Consensus 399 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~ 478 (2100)
.++.+.|+.+++++++.++..|+++|.+++..++..+..+.+.|+++.|+.+|+++++.++..|+++|+|++.++++.+.
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 46788999999999999999999999999988888889999999999999999999999999999999999977888999
Q ss_pred HHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC
Q 000133 479 AITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD 558 (2100)
Q Consensus 479 ~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~ 558 (2100)
.+.+.|+++.|+++|.++++.+++.|+++|+||+.++++.+..+.+.|+++.|+++++++++.++..|+++|++++..++
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence 99999999999999999999999999999999998888888889999999999999999999999999999999987432
Q ss_pred CCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 000133 559 TATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFE 634 (2100)
Q Consensus 559 ~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~ 634 (2100)
. .+..+...|+++.|++++.++++++++.|+++|.+|+.
T Consensus 171 ~-------------------------------------~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 171 E-------------------------------------QKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp H-------------------------------------HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred H-------------------------------------HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 1 12244567889999999999999999999999999985
No 41
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.79 E-value=4.8e-18 Score=195.45 Aligned_cols=199 Identities=20% Similarity=0.249 Sum_probs=181.5
Q ss_pred CCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHH
Q 000133 441 REGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRA 520 (2100)
Q Consensus 441 ~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~ 520 (2100)
.++.+.|+.+++++++.++..|+++|++++.++++.+..+.+.|+++.|+++|.++++++++.|+++|+|++..+++.+.
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 47789999999999999999999999999987889999999999999999999999999999999999999987889999
Q ss_pred HHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHh
Q 000133 521 CVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREG 600 (2100)
Q Consensus 521 ~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~ 600 (2100)
.+.+.|++|.|+++|+++++.++..|+++|++++.+.+. ....
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-------------------------------------~~~~ 133 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE-------------------------------------QIQA 133 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH-------------------------------------HHHH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHH-------------------------------------HHHH
Confidence 999999999999999999999999999999999863321 1123
Q ss_pred hhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 000133 601 SAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFL 676 (2100)
Q Consensus 601 i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~ 676 (2100)
+.+.++++.|+++++++++.+++.|+++|.+++..+++.+..+.+.|+++.|++++.++++.+++.|+.+|.+|+.
T Consensus 134 ~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 4457889999999999999999999999999999888899999999999999999999999999999999999954
No 42
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.77 E-value=1.8e-15 Score=213.19 Aligned_cols=768 Identities=13% Similarity=0.031 Sum_probs=466.7
Q ss_pred HHHHHHHHHH-HccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhcC--CHHHHHHHHHHHHhhhccc
Q 000133 9 ASVAQCIEQL-RQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSG--SLAVKIQAATVLGSLCKEN 85 (2100)
Q Consensus 9 ~~v~~~~~~l-~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~~--~~~v~~~aa~~L~~L~~~~ 85 (2100)
..+.++++.+ .. .++..|..|...|..+.+... .+....|+.++.+. +..+|..|+.+|.+..+..
T Consensus 4 ~~l~~~L~~~~~s--~d~~~r~~Ae~~L~~~~~~~~---------~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~ 72 (861)
T 2bpt_A 4 AEFAQLLENSILS--PDQNIRLTSETQLKKLSNDNF---------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSK 72 (861)
T ss_dssp HHHHHHHHHHHHC--SSHHHHHHHHHHHHHHHHHCH---------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCS
T ss_pred HHHHHHHHHcccC--cCHHHHHHHHHHHHHHHhhCH---------HHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCc
Confidence 3567777765 53 466778888888888665311 24567788888764 6789999999999875321
Q ss_pred h-h-------hHH--H---HhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhcc
Q 000133 86 E-L-------RVK--V---LLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNG 152 (2100)
Q Consensus 86 ~-~-------~~~--i---~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~ 152 (2100)
. . +.. + .....-+.|+..|.++++.+|..++.+|..+.....+. . .-...+|.|++.+.+.
T Consensus 73 w~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~----~--~w~~ll~~L~~~l~~~ 146 (861)
T 2bpt_A 73 DSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPH----G--AWPELMKIMVDNTGAE 146 (861)
T ss_dssp SHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG----T--CCHHHHHHHHHHTSTT
T ss_pred ChHHHHHHHHhHhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcc----c--ccHHHHHHHHHHHhcC
Confidence 0 0 000 0 01122356788888899999999999999988721110 0 0123466666666542
Q ss_pred CCCcchHHHHHHHHHHHhccCChhhHH--HHHhcCCHHHHHHhHccC--CHHHHHHHHHHHHHHhhcCcchhh-HHhhhc
Q 000133 153 LKSGNVVDNLLTGALRNLSTSTEGFWA--ATVQAGGIDILVKLLTLG--QSSTQAHVCFLLACMMEEDVSVCS-RVLAAD 227 (2100)
Q Consensus 153 ~~~~~~v~~~a~~aL~nL~~~~~~~~~--~i~~~g~v~~Lv~lL~s~--~~~v~~~a~~~L~~L~~~~~~~~~-~i~~~g 227 (2100)
.++.++..++.+|..++.......+ .-.....++.+...+.++ ++.+|..++.+|..+......... ......
T Consensus 147 --~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ 224 (861)
T 2bpt_A 147 --QPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNY 224 (861)
T ss_dssp --SCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHH
Confidence 1455777788888888753211100 001112466777788877 889999999999877533221110 001123
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHh-HHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHh
Q 000133 228 ATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDA-RREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANI 306 (2100)
Q Consensus 228 ~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~-~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl 306 (2100)
.++.|.+.+.+ .+.++|..++.+|..+....++. ...+. ...++.++..+.+. +..++..++..+..+
T Consensus 225 ll~~l~~~~~~-~~~~~r~~a~~~l~~l~~~~~~~~~~~l~-~~l~~~~~~~~~~~---------~~~vr~~a~~~l~~l 293 (861)
T 2bpt_A 225 LMQVVCEATQA-EDIEVQAAAFGCLCKIMSKYYTFMKPYME-QALYALTIATMKSP---------NDKVASMTVEFWSTI 293 (861)
T ss_dssp HHHHHHHHHTC-SCHHHHHHHHHHHHHHHHHHGGGCHHHHH-HTHHHHHHHHTTCS---------SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCC---------cHHHHHHHHHHHHHH
Confidence 46666666655 44789999999999988643321 11111 13344455555443 256777888877766
Q ss_pred hCCCcchhhhccccccCCCC-hhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCC------CChHHHHHH
Q 000133 307 SGGLSNVISSLGQSLESCSS-PAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPR------LPFLVQERT 379 (2100)
Q Consensus 307 ~~~~~~~i~~l~~~~~~~~~-~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~------~~~~vq~~a 379 (2100)
+.........-.+....|.. ...... .+ ..+.+.++..+... ....++..+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------------------~~il~~ll~~l~~~~~d~~d~~~~~r~~a 351 (861)
T 2bpt_A 294 CEEEIDIAYELAQFPQSPLQSYNFALS---SI-------------------KDVVPNLLNLLTRQNEDPEDDDWNVSMSA 351 (861)
T ss_dssp HHHHHHHHHHHHHCTTCSCCCCCHHHH---HH-------------------HHHHHHHHHHTTCCCCC-CCCCCHHHHHH
T ss_pred HHHHHhhhhhhhhccCCchhhHHHHHH---HH-------------------HHHHHHHHHHHHhcccccccccCcHHHHH
Confidence 54110000000000000000 000000 00 13344444444431 223578889
Q ss_pred HHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCc-cchHHHHhCCcHHHHHHhhCCCCHHH
Q 000133 380 IEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEG-SLWRALQGREGIQLLISLLGLSSEQQ 458 (2100)
Q Consensus 380 a~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~s~~~~v 458 (2100)
..+|..++..-. ...+ ...++.+...+.+.++.+|+.|+.+++.++.... .......+ ..++.|+..++++++.+
T Consensus 352 ~~~L~~l~~~~~-~~~~--~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~~~v 427 (861)
T 2bpt_A 352 GACLQLFAQNCG-NHIL--EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQSLQV 427 (861)
T ss_dssp HHHHHHHHHHHG-GGGH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSCHHH
T ss_pred HHHHHHHHHHcc-HhHH--HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCcHHH
Confidence 999988843211 1111 1345666777788899999999999999997642 21111121 46788999999999999
Q ss_pred HHHHHHHHHHhccCCcccH-HHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCC-----hhhHHHHHhCCcHHHHH
Q 000133 459 QECSVALLCLLSNENDDSK-WAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHS-----EDIRACVESADAVPALL 532 (2100)
Q Consensus 459 ~~~A~~aL~nLs~~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~-----~~~~~~i~~~g~i~~Lv 532 (2100)
+..++++|+.++....... ..-.-...++.|++.+.+. +.+|..|+++|.+++... +.....+ ...++.|+
T Consensus 428 r~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~ 504 (861)
T 2bpt_A 428 KETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLI 504 (861)
T ss_dssp HHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHH
Confidence 9999999999875321100 0001123578888888776 999999999999998631 1111111 23567888
Q ss_pred HHhhcCC--hhHHHHHHHHHHHHhcCCCCC-------cHHHHHHHhhcC---------------CcchHHHHHHHHHHHH
Q 000133 533 WLLKNGS--ANGKEIAAKTLNHLIHKSDTA-------TISQLTALLTSD---------------LPESKVYVLDALKSML 588 (2100)
Q Consensus 533 ~lL~~~~--~~~~~~Aa~aL~~L~~~~~~~-------~i~~L~~lL~~~---------------~~~~~~~a~~aL~~l~ 588 (2100)
.++++.+ +.++..+..++..++...... .+|.++..+.+. ..+++..+..+|+.+.
T Consensus 505 ~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~ 584 (861)
T 2bpt_A 505 GAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVI 584 (861)
T ss_dssp HHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHH
Confidence 8888543 789999999999998765432 334455555421 3346677888888877
Q ss_pred hccCchhHHHHhhhccchHHHHHHHhcCCCH-HHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHH
Q 000133 589 SVVSFSDILREGSAANDAVETMIKILSSTKE-ETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEA 667 (2100)
Q Consensus 589 ~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~-~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a 667 (2100)
...+.. +... -...++.+...+.+.+. .+++.+..++..++....+... ......+|.|...+.+++..++..+
T Consensus 585 ~~~~~~--~~~~--~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~-~~l~~i~~~l~~~l~~~~~~vr~~a 659 (861)
T 2bpt_A 585 RKSPSS--VEPV--ADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFE-KYLETFSPYLLKALNQVDSPVSITA 659 (861)
T ss_dssp HHCGGG--TGGG--HHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGH-HHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred HHhhhh--hHHH--HHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHhccccHHHHHHH
Confidence 644321 1111 12347788888888776 8999999999998865332211 2233488999999988888899999
Q ss_pred HHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCC--HHHHHHHHHHHHHHhcC-cHHHHHHHHcCcHHHHHHHHccCC
Q 000133 668 SRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPV--LEVAEQATCALANLILD-SEVSEKAIAEEIILPATRVLCEGT 744 (2100)
Q Consensus 668 a~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~--~evr~~aa~aL~~L~~~-~~~~~~~v~~~~v~~L~~ll~~~~ 744 (2100)
+.+++.++....+.-. ..-...++.+++.+.+++ +++|..+..+++.++.. ++.... .-+.+++.+.+.+....
T Consensus 660 ~~~l~~l~~~~~~~~~--~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~-~l~~~l~~l~~~~~~~~ 736 (861)
T 2bpt_A 660 VGFIADISNSLEEDFR--RYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIP-YLNDIMALCVAAQNTKP 736 (861)
T ss_dssp HHHHHHHHHHTGGGGH--HHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHH-HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhchhcc--chHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHhcCC
Confidence 9999999765543211 122346777777777764 88999999999999843 222222 23678888888887532
Q ss_pred -----------hhHHHHHHHHHHHHHhcCccc-hhHhhhhhccCcHHHHHHhhhhc----ccccchHhHHHHHHHHHHcC
Q 000133 745 -----------ISGKTLAAAAIARLLHSRKID-YTITDCVNRAGTVLALVSFLESA----SGSVATSEALDALAILSRSG 808 (2100)
Q Consensus 745 -----------~~~~~~Aa~aL~~l~~~~~~~-~~~~~~~~~~g~l~~li~~l~s~----~~~v~~~~al~~L~~L~~~~ 808 (2100)
..+|..+..++..+....+.. ..+..+ ....+..+...+.+. +..+. ..|+.+|..+++.-
T Consensus 737 ~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~--~~~i~~~l~~~~~d~~~~~~~~vr-~~a~~~l~~l~~~~ 813 (861)
T 2bpt_A 737 ENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPY--VGTIFQFIAQVAEDPQLYSEDATS-RAAVGLIGDIAAMF 813 (861)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGG--HHHHHHHHHHHHHCHHHHTSHHHH-HHHHHHHHHHHHHC
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH--HHHHHHHHHHHHcCcccCCcHHHH-HHHHHHHHHHHHHc
Confidence 236888888888888654421 122221 112233333444432 34444 88999999998765
Q ss_pred CCCCCCCcccceeeccC-CCchhhhhhhcc---CChhHHHHHHHHHHHH
Q 000133 809 GASGHVKPAWQVLAEFP-KSITPIVSSIAD---ATPLLQDKAIEILSRL 853 (2100)
Q Consensus 809 ~~~~~~~~~~~~~~~~~-~~l~~L~~~l~~---~~~~~~~~a~~~L~~L 853 (2100)
.+..+. .-.+ ..+..|++++.. .+..+++.|..+++.+
T Consensus 814 ~g~~~~-------~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~ 855 (861)
T 2bpt_A 814 PDGSIK-------QFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQ 855 (861)
T ss_dssp TTSTTG-------GGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchHH-------HHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHH
Confidence 221111 1234 467888888873 5678999999988777
No 43
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.77 E-value=8.1e-16 Score=216.67 Aligned_cols=750 Identities=14% Similarity=0.082 Sum_probs=468.2
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhhcCC--CHHHHHHHHHHHHHHhccCCCCcccc-
Q 000133 58 VLVSLL-RSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSS--SAEGQIAAAKTIYAVSQGGAKDYVGS- 133 (2100)
Q Consensus 58 ~L~~lL-~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~s~--~~~~~~~A~~aL~~Ls~~~~~~~~~~- 133 (2100)
.++..+ .+++..+|..|...|..+.+++ ..+.++.|+..+.++ +..+|..|+..|++..... .....
T Consensus 8 ~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~-------~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~--w~~~~~ 78 (861)
T 2bpt_A 8 QLLENSILSPDQNIRLTSETQLKKLSNDN-------FLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSK--DSVKTQ 78 (861)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCS--SHHHHH
T ss_pred HHHHHcccCcCHHHHHHHHHHHHHHHhhC-------HHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCc--ChHHHH
Confidence 444455 6788899999999999875431 124577888888654 6788999999999875411 00000
Q ss_pred ------c----chhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCC-h-hhHHHHHhcCCHHHHHHhHccC-CHH
Q 000133 134 ------K----IFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTST-E-GFWAATVQAGGIDILVKLLTLG-QSS 200 (2100)
Q Consensus 134 ------~----~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~-~-~~~~~i~~~g~v~~Lv~lL~s~-~~~ 200 (2100)
. .-....+-+.|++.|.. .++.++..+..++..++... + ..|.. .++.|++.+.++ ++.
T Consensus 79 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~---~~~~vr~~~~~~l~~i~~~~~p~~~w~~-----ll~~L~~~l~~~~~~~ 150 (861)
T 2bpt_A 79 QFAQRWITQVSPEAKNQIKTNALTALVS---IEPRIANAAAQLIAAIADIELPHGAWPE-----LMKIMVDNTGAEQPEN 150 (861)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHHGGGTCCHH-----HHHHHHHHTSTTSCHH
T ss_pred HHHHhHhhhCCHHHHHHHHHHHHHHHCC---CchHHHHHHHHHHHHHHHhhCcccccHH-----HHHHHHHHHhcCCCHH
Confidence 0 00122334456666654 33557777888888776432 1 24543 468899999988 999
Q ss_pred HHHHHHHHHHHHhhcCcchh--hHHhhhchHHHHHHHhcCCC-CHHHHHHHHHHHHHhhcCChHhH-HHHHhCCChHHHH
Q 000133 201 TQAHVCFLLACMMEEDVSVC--SRVLAADATKQLLKLLGSGN-EASVRAEAAGALKSLSDHCKDAR-REIAGSNGIPAMI 276 (2100)
Q Consensus 201 v~~~a~~~L~~L~~~~~~~~--~~i~~~g~i~~Lv~lL~~~~-~~~v~~~Aa~aL~~Ls~~~~~~~-~~i~~~g~i~~Lv 276 (2100)
++..+..+|..++....... -.-.....++.+...+.+.. +.++|..|+.+|.++...-...- ........++.+.
T Consensus 151 ~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~ 230 (861)
T 2bpt_A 151 VKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVC 230 (861)
T ss_dssp HHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHH
Confidence 99999999988885432110 01112345677778887752 57899999999998753211110 0000011244455
Q ss_pred HhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCc
Q 000133 277 NATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDP 356 (2100)
Q Consensus 277 ~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~ 356 (2100)
..+.++ +..++..++.+|..+....+.. . .. ++.
T Consensus 231 ~~~~~~---------~~~~r~~a~~~l~~l~~~~~~~------------~----~~------~l~--------------- 264 (861)
T 2bpt_A 231 EATQAE---------DIEVQAAAFGCLCKIMSKYYTF------------M----KP------YME--------------- 264 (861)
T ss_dssp HHHTCS---------CHHHHHHHHHHHHHHHHHHGGG------------C----HH------HHH---------------
T ss_pred HHhcCC---------CHHHHHHHHHHHHHHHHHHHHH------------H----HH------HHH---------------
Confidence 555433 2567788888887665421100 0 00 000
Q ss_pred hhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCc------------------c-chhhhccccHHHHHHhhcC------
Q 000133 357 LIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPL------------------L-SIKLENSEAKRLLVGLITM------ 411 (2100)
Q Consensus 357 ~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~------------------~-~~~l~~~g~i~~Lv~lL~~------ 411 (2100)
..+.+.+...+.. .++.++..+.+.+..+..... . +..+ ...++.++..+..
T Consensus 265 ~~l~~~~~~~~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~il~~ll~~l~~~~~d~~ 341 (861)
T 2bpt_A 265 QALYALTIATMKS-PNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI--KDVVPNLLNLLTRQNEDPE 341 (861)
T ss_dssp HTHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH--HHHHHHHHHHTTCCCCC-C
T ss_pred HHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH--HHHHHHHHHHHHhcccccc
Confidence 0233344444443 345678888888887743210 0 1111 2356677777763
Q ss_pred -CCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCc-ccHHHHHhcCChHHH
Q 000133 412 -ATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNEND-DSKWAITAAGGIPPL 489 (2100)
Q Consensus 412 -~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~-~~~~~i~~~g~i~~L 489 (2100)
.++.++..+..+|..++...+.. +. ...++.+...+.+.+..+++.|+.+|+.++.+.. +...... ...++.|
T Consensus 342 d~~~~~r~~a~~~L~~l~~~~~~~---~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l 416 (861)
T 2bpt_A 342 DDDWNVSMSAGACLQLFAQNCGNH---IL-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSI 416 (861)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHH
T ss_pred cccCcHHHHHHHHHHHHHHHccHh---HH-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHH
Confidence 23578999999999988753321 11 1345777778888999999999999999996432 2221222 2478889
Q ss_pred HHhccCCCHHHHHHHHHHHHHHhcCChhh---HHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC--------
Q 000133 490 VQILESGSAKAKEDSASILRNLCNHSEDI---RACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD-------- 558 (2100)
Q Consensus 490 v~lL~~~~~~vre~A~~aL~~L~~~~~~~---~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~-------- 558 (2100)
+..+.++++.+|..++|+|+.++...... ... -...++.|+..+++. ++++..++++|.+++....
T Consensus 417 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~ 493 (861)
T 2bpt_A 417 LNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH--LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIY 493 (861)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT--HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGG
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH--HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhH
Confidence 99999999999999999999998632110 001 123678888888876 8999999999999876421
Q ss_pred ---CCcHHHHHHHhhcCC--cchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcC---------------CC
Q 000133 559 ---TATISQLTALLTSDL--PESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSS---------------TK 618 (2100)
Q Consensus 559 ---~~~i~~L~~lL~~~~--~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s---------------~~ 618 (2100)
+..++.|+.++.+.+ +.+|..+.++++.+....+..- ...+ ...+|.+++.+.. ..
T Consensus 494 ~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~--~~~~--~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~ 569 (861)
T 2bpt_A 494 NFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTV--AETS--ASISTFVMDKLGQTMSVDENQLTLEDAQSL 569 (861)
T ss_dssp GGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGG--HHHH--HHHHHHHHHHHHHHTTSCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhh--HHHH--HHHHHHHHHHHHHHHhhhcccCChhhHHHH
Confidence 133556667776433 6789999999999887655321 1111 1236667766542 14
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCH-HHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHH
Q 000133 619 EETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSE-CILVEASRCLAAIFLSVRENREVAAVARDALSPLVV 697 (2100)
Q Consensus 619 ~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~-~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ 697 (2100)
..++..++.+|.+++........ ......++.+...+.+.+. .++..+..+++.++......... .-...++.|..
T Consensus 570 ~~~~~~~~~~l~~l~~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~--~l~~i~~~l~~ 646 (861)
T 2bpt_A 570 QELQSNILTVLAAVIRKSPSSVE-PVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEK--YLETFSPYLLK 646 (861)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGTG-GGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHH--HHHHHHHHHHH
Confidence 56788899999999875443111 1122467778888877765 78888999999887543322111 12347888888
Q ss_pred HhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCC--hhHHHHHHHHHHHHHhcCccchhHhhhhhcc
Q 000133 698 LAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGT--ISGKTLAAAAIARLLHSRKIDYTITDCVNRA 775 (2100)
Q Consensus 698 ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~--~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~ 775 (2100)
.+.++++++|..+..++..++.............+++.+.+.+.+.+ ..++..+..++..+....+.. +..+ ..
T Consensus 647 ~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~--~~~~--l~ 722 (861)
T 2bpt_A 647 ALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGAD--FIPY--LN 722 (861)
T ss_dssp HHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGG--GHHH--HH
T ss_pred HhccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhh--HHHH--HH
Confidence 88888889999999999998733221222334678888999998765 669999999999998755432 3331 13
Q ss_pred CcHHHHHHhhhhcc----c------ccchHhHHHHHHHHHHcCCCCCCCCcccceeeccCCCchhhhhhhccC----Chh
Q 000133 776 GTVLALVSFLESAS----G------SVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADA----TPL 841 (2100)
Q Consensus 776 g~l~~li~~l~s~~----~------~v~~~~al~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~----~~~ 841 (2100)
..++.+++.+.... + ...+..+++++..++..-... +....-..+..+..|.+++.+. +..
T Consensus 723 ~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~-----~~~~~~~~~~i~~~l~~~~~d~~~~~~~~ 797 (861)
T 2bpt_A 723 DIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDK-----PEALFPYVGTIFQFIAQVAEDPQLYSEDA 797 (861)
T ss_dssp HHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----HHHHGGGHHHHHHHHHHHHHCHHHHTSHH
T ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccC-----HHHHHHHHHHHHHHHHHHHcCcccCCcHH
Confidence 45666777665321 0 112377788888777543320 1122223355666676777663 789
Q ss_pred HHHHHHHHHHHHhcCCcccchhcccc--cccchHHHHHHHh--hcCCcceecchhhHHHHHhh
Q 000133 842 LQDKAIEILSRLCRDQPAVLGDEVTG--ASGCISSIARRVI--SCTNPKVKIGGAALLICAAK 900 (2100)
Q Consensus 842 ~~~~a~~~L~~L~~~~~~~~g~~~~~--~~~~~~~~~~~~l--~s~~~~~r~~~~~~~~~~~~ 900 (2100)
+|..|..++..|+..-+ |.-+.. .+.+...++...- ++.+..++-.|+|++..++|
T Consensus 798 vr~~a~~~l~~l~~~~~---g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~ 857 (861)
T 2bpt_A 798 TSRAAVGLIGDIAAMFP---DGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKR 857 (861)
T ss_dssp HHHHHHHHHHHHHHHCT---TSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC---CchHHHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 99999999998854210 221111 1123334444443 36677889999999888775
No 44
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.76 E-value=3e-18 Score=195.46 Aligned_cols=205 Identities=19% Similarity=0.184 Sum_probs=172.6
Q ss_pred CChHHHHHhhcCCCH--HHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhcc
Q 000133 95 GCIPPLLGLLKSSSA--EGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLST 172 (2100)
Q Consensus 95 g~i~~Lv~lL~s~~~--~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~ 172 (2100)
-.+|+|+.+|.++++ +++..|+.+|.+++.+ +...+..+++.|+||+|+++|.+. ++.++..++++|+||+.
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~---~~~~r~~I~~~G~Ip~LV~lL~s~---~~~vq~~Aa~aL~nLa~ 81 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQ---KSEARKRVNQLRGILKLLQLLKVQ---NEDVQRAVCGALRNLVF 81 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHH---CHHHHHHHHHTTHHHHHHHGGGCC---CHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcC---CcHHHHHHHHcCCHHHHHHHHcCC---CHHHHHHHHHHHHHHHh
Confidence 358999999999998 8888899999999973 444577788999999999999873 45699999999999998
Q ss_pred CChhhHHHHHhcCCHHHHHHhHc-cCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhc-----C--------
Q 000133 173 STEGFWAATVQAGGIDILVKLLT-LGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLG-----S-------- 238 (2100)
Q Consensus 173 ~~~~~~~~i~~~g~v~~Lv~lL~-s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~-----~-------- 238 (2100)
.++.++..|+++|+||+|+++|+ +++.+++++|+.+|++|+..+. ++..+++ +++++|++++. .
T Consensus 82 ~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~-~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~ 159 (233)
T 3tt9_A 82 EDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK-LKNLMIT-EALLTLTENIIIPFSGWPEGDYPKA 159 (233)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG-GHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCC
T ss_pred CCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh-hHHHHHh-ccHHHHHHHHhccccCCcccccccc
Confidence 88889999999999999999998 5799999999999999987544 6777775 57999998663 1
Q ss_pred --CCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCC-hHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCC
Q 000133 239 --GNEASVRAEAAGALKSLSDHCKDARREIAGSNG-IPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGL 310 (2100)
Q Consensus 239 --~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~-i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~ 310 (2100)
..+.+++.+|+++|+||+..++++|+.+.+++| |+.|+.++.... ..++.+.+.+|+++++|+||+...
T Consensus 160 ~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~---~~~~~~~k~~En~v~~L~nLs~~~ 231 (233)
T 3tt9_A 160 NGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTI---ADYQPDDKATENCVCILHNLSYQL 231 (233)
T ss_dssp CTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHH---HTTCTTCHHHHHHHHHHHHHCCCC
T ss_pred cccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhh---hcccchhHHHHHHHHHHHHHHhhh
Confidence 135689999999999999988899999998855 799999996421 123446788999999999999753
No 45
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.75 E-value=8e-18 Score=192.01 Aligned_cols=196 Identities=14% Similarity=0.143 Sum_probs=173.7
Q ss_pred hHHHHHhhcCCCCCh-HHHHHHHHHHHHH-hCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchH
Q 000133 359 VEQTLVNQFKPRLPF-LVQERTIEALASL-YGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWR 436 (2100)
Q Consensus 359 i~~~Lv~lL~~~~~~-~vq~~aa~aL~~L-~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~ 436 (2100)
.++.++++|.+++++ .+|..++.++.+| ..++.++..+.+.|++|.|+.+|+++++++|+.|+++|+||+.++++++.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 467789999888762 5788899999999 47788999999999999999999999999999999999999998888999
Q ss_pred HHHhCCcHHHHHHhhC-CCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhcc----------------CCCHH
Q 000133 437 ALQGREGIQLLISLLG-LSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILE----------------SGSAK 499 (2100)
Q Consensus 437 ~i~~~g~i~~Lv~lL~-s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~----------------~~~~~ 499 (2100)
.|.+.|+||+|+++|+ +++.++++.|+.+|+||+. .++++..|.+. ++|+|++++. ..+.+
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~-~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS-NDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc-ChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHH
Confidence 9999999999999998 5799999999999999995 78888888874 7999999763 12679
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhC-CcHHHHHHHhhcC------ChhHHHHHHHHHHHHhcC
Q 000133 500 AKEDSASILRNLCNHSEDIRACVESA-DAVPALLWLLKNG------SANGKEIAAKTLNHLIHK 556 (2100)
Q Consensus 500 vre~A~~aL~~L~~~~~~~~~~i~~~-g~i~~Lv~lL~~~------~~~~~~~Aa~aL~~L~~~ 556 (2100)
++++|+.+|.||+..+++.|..+.+. |+|+.|+.+++.+ +.+.++.|..+|+||++.
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999998778999999885 6689999999873 457899999999999985
No 46
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.74 E-value=1.9e-15 Score=213.31 Aligned_cols=765 Identities=12% Similarity=0.036 Sum_probs=457.1
Q ss_pred HHHHHHHHHccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhcC--CHHHHHHHHHHHHhhhccc-hh
Q 000133 11 VAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSG--SLAVKIQAATVLGSLCKEN-EL 87 (2100)
Q Consensus 11 v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~~--~~~v~~~aa~~L~~L~~~~-~~ 87 (2100)
+.++++.+. +.++..|..|...|-.+.... ..+.++.|+..+.++ +..+|..|+.+|.+..... +.
T Consensus 3 l~~~L~~~~--s~d~~~r~~A~~~L~~~~~~~---------~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~ 71 (876)
T 1qgr_A 3 LITILEKTV--SPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPD 71 (876)
T ss_dssp HHHHHHGGG--CSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHHHhcC---------hhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchH
Confidence 445666554 345667888888887765421 125677888888774 5789999999999865322 11
Q ss_pred hHHHHh---cCC--------hHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCc
Q 000133 88 RVKVLL---GGC--------IPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSG 156 (2100)
Q Consensus 88 ~~~i~~---~g~--------i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~ 156 (2100)
+..... ... -+.++..|.++++.. ..++.++..++....+ .. .-...+|.|+..+.+.. .+
T Consensus 72 ~~~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~----~~--~w~~ll~~l~~~l~~~~-~~ 143 (876)
T 1qgr_A 72 IKAQYQQRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIP----VN--QWPELIPQLVANVTNPN-ST 143 (876)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGG----GT--CCTTHHHHHHHHHHCTT-CC
T ss_pred hHHHHHhhhccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCc----cc--ccHHHHHHHHHHHhCCC-CC
Confidence 110000 011 223777888777777 7788888888762110 00 12456788888886531 14
Q ss_pred chHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccC--CHHHHHHHHHHHHHHhhcCcchhh-HHhhhchHHHHH
Q 000133 157 NVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLG--QSSTQAHVCFLLACMMEEDVSVCS-RVLAADATKQLL 233 (2100)
Q Consensus 157 ~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~--~~~v~~~a~~~L~~L~~~~~~~~~-~i~~~g~i~~Lv 233 (2100)
+.++..++.+|..++.......-.-.-...++.+...+.++ +..+|..++.+|..++...+.... .......++.+.
T Consensus 144 ~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~ 223 (876)
T 1qgr_A 144 EHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVC 223 (876)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 56777888899888743211000011124566778888876 688999999999887754332111 111123466667
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcch
Q 000133 234 KLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNV 313 (2100)
Q Consensus 234 ~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~ 313 (2100)
+.+.. .+.++|..++.+|..+....+..-........++.++..+...+ ..++..++..+.+++......
T Consensus 224 ~~~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~---------~~v~~~al~~l~~l~~~~~~~ 293 (876)
T 1qgr_A 224 EATQC-PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDI---------DEVALQGIEFWSNVCDEEMDL 293 (876)
T ss_dssp HHTTC-SSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSS---------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCC-CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCc---------hHHHHHHHHHHHHHHHHHHhH
Confidence 66654 45789999999999998654432111222345666666664432 566777777776665311000
Q ss_pred hhh----ccccccCC-CChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCC------CCChHHHHHHHHH
Q 000133 314 ISS----LGQSLESC-SSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKP------RLPFLVQERTIEA 382 (2100)
Q Consensus 314 i~~----l~~~~~~~-~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~------~~~~~vq~~aa~a 382 (2100)
... ..+ -..| +...... ...+ ..+.+.+...+.. ..+..+|..+..+
T Consensus 294 ~~~~~~~~~~-~~~~~~~~~~~~--~~~~-------------------~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~ 351 (876)
T 1qgr_A 294 AIEASEAAEQ-GRPPEHTSKFYA--KGAL-------------------QYLVPILTQTLTKQDENDDDDDWNPCKAAGVC 351 (876)
T ss_dssp HHHHHHHHHH-SSCCSSCCCCHH--HHHH-------------------HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHH
T ss_pred hhhhcccccc-CCCccchhHHHH--HHHH-------------------HHHhHHHHHHhhcccccccccccHHHHHHHHH
Confidence 000 000 0000 0000000 0000 1233444444432 1234578899999
Q ss_pred HHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCc-cchHHHHhCCcHHHHHHhhCCCCHHHHHH
Q 000133 383 LASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEG-SLWRALQGREGIQLLISLLGLSSEQQQEC 461 (2100)
Q Consensus 383 L~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~ 461 (2100)
+..++..-. ..+. ...++.+...+.+.++.+|..|+.++..++.+.. ....... ...++.++..++++++.+|..
T Consensus 352 l~~l~~~~~--~~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~ 427 (876)
T 1qgr_A 352 LMLLATCCE--DDIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDT 427 (876)
T ss_dssp HHHHHHHHG--GGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHHHCc--HhhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHH
Confidence 988843211 1111 1345666777888899999999999999997643 2111111 246899999999999999999
Q ss_pred HHHHHHHhccCCcccH-HHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCCh---------------hhHHHHHhC
Q 000133 462 SVALLCLLSNENDDSK-WAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSE---------------DIRACVESA 525 (2100)
Q Consensus 462 A~~aL~nLs~~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~---------------~~~~~i~~~ 525 (2100)
|+++|.+++...+... ..-.-...++.|+..+.+. +.+++.++++|.+++.... .....+ .
T Consensus 428 a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~ 504 (876)
T 1qgr_A 428 AAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--E 504 (876)
T ss_dssp HHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--H
T ss_pred HHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--H
Confidence 9999999986433210 0001123577888888775 8999999999999986311 011111 2
Q ss_pred CcHHHHHHHhhcC---ChhHHHHHHHHHHHHhcCCCC-------CcHHHHHHHhhc-----------CC----cchHHHH
Q 000133 526 DAVPALLWLLKNG---SANGKEIAAKTLNHLIHKSDT-------ATISQLTALLTS-----------DL----PESKVYV 580 (2100)
Q Consensus 526 g~i~~Lv~lL~~~---~~~~~~~Aa~aL~~L~~~~~~-------~~i~~L~~lL~~-----------~~----~~~~~~a 580 (2100)
..++.|+..+.+. +..++..+..+|..++..... ..++.++..+.. ++ ++++..+
T Consensus 505 ~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~ 584 (876)
T 1qgr_A 505 LIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLL 584 (876)
T ss_dssp HHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHH
Confidence 3667888888764 356788889999888775433 223334443332 11 3456667
Q ss_pred HHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCC--HHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcC
Q 000133 581 LDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTK--EETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDV 658 (2100)
Q Consensus 581 ~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~--~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~ 658 (2100)
..+++.+....+..+ +.... ...++.++.++++.+ ..++..+..++..++........ ......+|.|...+.+
T Consensus 585 ~~~l~~l~~~~~~~~-~~~~~--~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~-~~~~~~~~~l~~~l~~ 660 (876)
T 1qgr_A 585 CATLQNVLRKVQHQD-ALQIS--DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFL-KYMEAFKPFLGIGLKN 660 (876)
T ss_dssp HHHHHHHHTTSCHHH-HHTTH--HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGG-GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChhh-hhHHH--HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHcC
Confidence 788887765443111 11111 234788888887764 47899999999999864222111 1112367888899987
Q ss_pred C-CHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCC--CCHHHHHHHHHHHHHHhc--CcHHHHHHHHcCcH
Q 000133 659 G-SECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGS--PVLEVAEQATCALANLIL--DSEVSEKAIAEEII 733 (2100)
Q Consensus 659 ~-~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~--~~~evr~~aa~aL~~L~~--~~~~~~~~v~~~~v 733 (2100)
. +..++..++.+++.++...... ....-...++.|++.+.+ .+.+++..+.+++++++. +++. .. .-+.++
T Consensus 661 ~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~-~~-~l~~~~ 736 (876)
T 1qgr_A 661 YAEYQVCLAAVGLVGDLCRALQSN--IIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEF-KK-YLEVVL 736 (876)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHGGG--GHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGG-GG-GHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhH-HH-HHHHHH
Confidence 6 7889999999999997643321 111124567788888877 467899999999999973 2332 11 225677
Q ss_pred HHHHHHHccCC-----------hhHHHHHHHHHHHHHhcCccc--------hhHhhhhhccCcHHHHHHhh----hhcc-
Q 000133 734 LPATRVLCEGT-----------ISGKTLAAAAIARLLHSRKID--------YTITDCVNRAGTVLALVSFL----ESAS- 789 (2100)
Q Consensus 734 ~~L~~ll~~~~-----------~~~~~~Aa~aL~~l~~~~~~~--------~~~~~~~~~~g~l~~li~~l----~s~~- 789 (2100)
+.|.+.+.... ..+|..+..++..++...+.. ..+ ...++.++..+ .+.+
T Consensus 737 ~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~~~~~i~~~l~~~~~~~~~ 810 (876)
T 1qgr_A 737 NTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLV------QPRVEFILSFIDHIAGDEDH 810 (876)
T ss_dssp HHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGS------GGGHHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHH------HHHHHHHHHHHHHHhcCCCC
Confidence 77777776442 157778888888777643321 111 11234444433 3331
Q ss_pred cccchHhHHHHHHHHHHcCCCCCCCCcccceeeccCCCchhhhh-hhccCChhHHHHHHHHHHHH
Q 000133 790 GSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVS-SIADATPLLQDKAIEILSRL 853 (2100)
Q Consensus 790 ~~v~~~~al~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~a~~~L~~L 853 (2100)
....+..|+.+|..+...... +. .........+.++++ ++.++++.+|+.|..++..+
T Consensus 811 ~~~vr~~a~~~l~~l~~~~~~-----~~-~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~ 869 (876)
T 1qgr_A 811 TDGVVACAAGLIGDLCTAFGK-----DV-LKLVEARPMIHELLTEGRRSKTNKAKTLARWATKEL 869 (876)
T ss_dssp CHHHHHHHHHHHHHHHHHHCT-----HH-HHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCc-----HH-HHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHH
Confidence 223348888888888654421 00 111113446788888 99999999999999999887
No 47
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.73 E-value=1.4e-16 Score=190.33 Aligned_cols=186 Identities=17% Similarity=0.189 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHH-hccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHH
Q 000133 456 EQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQ-ILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWL 534 (2100)
Q Consensus 456 ~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~l 534 (2100)
.+.+..|...|.+++. +.++...+...|++|+|+. +|.++++.+|+.|+|+|++++.+++.++..+.+.|++|+|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 3567789999999995 6778888999999999999 9999999999999999999999889999999999999999999
Q ss_pred hhcC-ChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHH
Q 000133 535 LKNG-SANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKI 613 (2100)
Q Consensus 535 L~~~-~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~l 613 (2100)
|+++ +..+++.|+++|++++.+..+ ....+...+|+|.|+.+
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~-------------------------------------~~~~~~~~ggi~~L~~l 175 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEA-------------------------------------GLLQFLRLDGFSVLMRA 175 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHH-------------------------------------HHHHHHHTTHHHHHHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcH-------------------------------------HHHHHHHCCCHHHHHHH
Confidence 9964 788999999999999874321 11234456899999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc
Q 000133 614 LSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVR 679 (2100)
Q Consensus 614 L~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~ 679 (2100)
|+++++.++..|+|+|.+++.++++.+..+.+.|++|+|+.+|.+.+..++..++.+|++++...+
T Consensus 176 L~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~ 241 (296)
T 1xqr_A 176 MQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFP 241 (296)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCH
T ss_pred HcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCCh
Confidence 999999999999999999999888899999999999999999999999999999999999987743
No 48
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.70 E-value=7.4e-17 Score=192.84 Aligned_cols=182 Identities=18% Similarity=0.197 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHHhCCCccchhhhccccHHHHHH-hhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCC
Q 000133 375 VQERTIEALASLYGNPLLSIKLENSEAKRLLVG-LITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGL 453 (2100)
Q Consensus 375 vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~-lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s 453 (2100)
-+..|+..|..+..+.++...+.+.|+++.|+. +|.++++.+|..|+++|++++.+++..++.+++.|++++|+.+|++
T Consensus 56 ~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~ 135 (296)
T 1xqr_A 56 EREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDR 135 (296)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHcc
Confidence 477888888888888888888899999999999 9999999999999999999999999999999999999999999995
Q ss_pred -CCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHH
Q 000133 454 -SSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALL 532 (2100)
Q Consensus 454 -~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv 532 (2100)
++..+++.|+|+|+|++.+++.....+.+.||++.|+.+|.+++..++..|+|+|.+|+..+++.+..+.+.|++++|+
T Consensus 136 ~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv 215 (296)
T 1xqr_A 136 DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLV 215 (296)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHH
Confidence 5889999999999999987888888999999999999999999999999999999999988889999999999999999
Q ss_pred HHhhcCChhHHHHHHHHHHHHhcC
Q 000133 533 WLLKNGSANGKEIAAKTLNHLIHK 556 (2100)
Q Consensus 533 ~lL~~~~~~~~~~Aa~aL~~L~~~ 556 (2100)
.+|.++++.+++.++.+|++++..
T Consensus 216 ~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 216 ALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHcCCChhHHHHHHHHHHHHHhC
Confidence 999999999999999999999864
No 49
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.65 E-value=4e-13 Score=169.64 Aligned_cols=475 Identities=16% Similarity=0.163 Sum_probs=325.9
Q ss_pred hchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHH
Q 000133 226 ADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALAN 305 (2100)
Q Consensus 226 ~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~n 305 (2100)
...|+.|+.-+.++.-.+-|+.|...|..+++. .+ .-+..+|++.|+..|.... .+.++.+.+..+|.|
T Consensus 20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~-~~Vg~~~l~~li~~L~~d~-------~D~e~v~~~LetL~~ 88 (651)
T 3grl_A 20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YR-LEVGIQAMEHLIHVLQTDR-------SDSEIIGYALDTLYN 88 (651)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TT-THHHHHTHHHHHHHHHSCT-------TCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hH-HHhhhhhHHHHHHHHhccc-------ccHHHHHHHHHHHHH
Confidence 456888888888877788999999999999864 32 2345689999999997642 457788889999988
Q ss_pred hhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHH
Q 000133 306 ISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALAS 385 (2100)
Q Consensus 306 l~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~ 385 (2100)
+..+.+. +.... .. + ...++ +..+-+.
T Consensus 89 l~~~~~~-----------~~~~~-~~------------------------~------------~~~~~-~~~~~~d---- 115 (651)
T 3grl_A 89 IISNDEE-----------EEVEE-NS------------------------T------------RQSED-LGSQFTE---- 115 (651)
T ss_dssp HHCCC--------------------------------------------------------------C-HHHHHHH----
T ss_pred HhCCCCc-----------ccccc-cc------------------------c------------ccchH-HHHHHHH----
Confidence 7653210 00000 00 0 00000 0000000
Q ss_pred HhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCcc-chHHHHhC-CcHHHHHHhhCCCCHHHHHHHH
Q 000133 386 LYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGS-LWRALQGR-EGIQLLISLLGLSSEQQQECSV 463 (2100)
Q Consensus 386 L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~-~~~~i~~~-g~i~~Lv~lL~s~~~~v~~~A~ 463 (2100)
..+.+.+.++.|+.+|++.+..+|.+++.+|..|+.+++. .+++|... +||+.|+.+|+++.+.+|.++.
T Consensus 116 --------~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneal 187 (651)
T 3grl_A 116 --------IFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGV 187 (651)
T ss_dssp --------HHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHH
T ss_pred --------HHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHH
Confidence 1344567899999999999999999999999999999888 88999865 8999999999999999999999
Q ss_pred HHHHHhccCCcccHHHHHhcCChHHHHHhccCCC----HHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCC
Q 000133 464 ALLCLLSNENDDSKWAITAAGGIPPLVQILESGS----AKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGS 539 (2100)
Q Consensus 464 ~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~----~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~ 539 (2100)
..|.+|+.++.+.++.+.-.|+++.|++++..+. ..+.+.|+..|.||...++.++..|.+.|.++.|..+++.+.
T Consensus 188 lLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~ 267 (651)
T 3grl_A 188 LLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGD 267 (651)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCS
T ss_pred HHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCc
Confidence 9999999988898999999999999999997653 478889999999999999999999999999999999997532
Q ss_pred h----hHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhc
Q 000133 540 A----NGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILS 615 (2100)
Q Consensus 540 ~----~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~ 615 (2100)
+ ..++ +.|+. .+-.++.+|-........ ....|..+...|+++.|++++.
T Consensus 268 ~~~~W~~Qk-----~~N~~------~~L~iIrlLv~~~~~~~~---------------t~~nQ~~~~~~g~l~~Ll~ll~ 321 (651)
T 3grl_A 268 ENSGWSAQK-----VTNLH------LMLQLVRVLVSPNNPPGA---------------TSSCQKAMFQCGLLQQLCTILM 321 (651)
T ss_dssp CSSCCCHHH-----HHHHH------HHHHHHHHHTCTTSCHHH---------------HHHHHHHHHHTTHHHHHHHHHT
T ss_pred cccccHHHH-----HHHHH------HHHHHHHHHhCCCCCCCC---------------CHHHHHHHHHCCCHHHHHHHHc
Confidence 2 1111 11110 011223333332221100 1113567778899999999887
Q ss_pred CC--CHHHHHHHHHHHHHHhcCChhhHHHHHhcC-----chHHHHHh----hcC-CCHHHHHHHHHHHHHHhcCCchhHH
Q 000133 616 ST--KEETQAKSASALAGIFETRKDLRESSIAVK-----TLWSVMKL----LDV-GSECILVEASRCLAAIFLSVRENRE 683 (2100)
Q Consensus 616 s~--~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g-----~v~~Lv~l----L~~-~~~~v~~~aa~aL~~L~~~~~~~~~ 683 (2100)
+. ...++..|..+++.+.++++..++.+.... ..|.++.+ +.+ ....++.+++.++.+.+..+.+.+.
T Consensus 322 ~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~ 401 (651)
T 3grl_A 322 ATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQG 401 (651)
T ss_dssp CSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHH
Confidence 65 688999999999999999999999887653 23444444 433 4578899999999999988765554
Q ss_pred HHHHhC----------CCh---HHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHH-HH--------c---CcHHHHHH
Q 000133 684 VAAVAR----------DAL---SPLVVLAGSPVLEVAEQATCALANLILDSEVSEKA-IA--------E---EIILPATR 738 (2100)
Q Consensus 684 ~~~~~~----------~~l---~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~-v~--------~---~~v~~L~~ 738 (2100)
. +... +.+ ..|...+.+.++---.-|+.+|.+++.+++..++. .. + -.++.++.
T Consensus 402 ~-i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~K~~~l~v~l~~~~ge~~vtliq~~~~ 480 (651)
T 3grl_A 402 E-IVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQQCTN 480 (651)
T ss_dssp H-HHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHHHHHHTTCBCCCCTTCCCCBHHHHHHH
T ss_pred H-HHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHHHHHHHhCcccccCCCCcccHHHHHHH
Confidence 4 3322 111 12445566667744467888999999877665543 21 1 22445566
Q ss_pred HHccCC-hhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhc-c-cccchHhHHHHHH
Q 000133 739 VLCEGT-ISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESA-S-GSVATSEALDALA 802 (2100)
Q Consensus 739 ll~~~~-~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~-~-~~v~~~~al~~L~ 802 (2100)
.+..++ ..++-+=..-|.-.+...+ .++.+.+.....++.|+..+... . .++. .++|.++.
T Consensus 481 ~L~~~~~~ri~vgyL~LL~~WL~e~p--~AV~dFL~~~s~l~~L~~~i~~~~~~~~~l-vqGL~a~L 544 (651)
T 3grl_A 481 ILSQGSKIQTRVGLLMLLCTWLSNCP--IAVTHFLHNSANVPFLTGQIAENLGEEEQL-VQGLCALL 544 (651)
T ss_dssp HTTTTCCHHHHHHHHHHHHHHHTTCH--HHHHHHHHSTTHHHHHHHHHHSCCCHHHHH-HHHHHHHH
T ss_pred HHhcCCchhHHHHHHHHHHHHHhCCh--HHHHHHHcCCchHHHHHHHHHhccCcchHH-HHHHHHHH
Confidence 665432 2244444455555554443 44555555566788888877532 2 2333 44555444
No 50
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.62 E-value=8.8e-13 Score=175.78 Aligned_cols=518 Identities=12% Similarity=0.081 Sum_probs=340.3
Q ss_pred CCchHHHHHHHhcCCHHHHHHHHH-HHHhhhccchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcc
Q 000133 53 SQAVPVLVSLLRSGSLAVKIQAAT-VLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYV 131 (2100)
Q Consensus 53 ~g~v~~L~~lL~~~~~~v~~~aa~-~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~ 131 (2100)
.|-+..+-..|++++...|.++.. .+..+..+.+. ....+.+++++.+++.+.|+.+..++.+++.. +++
T Consensus 12 ~~e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~------~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~e- 82 (591)
T 2vgl_B 12 KGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDV------SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKS--QPD- 82 (591)
T ss_dssp SSHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCC------GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH--SHH-
T ss_pred CChHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCCh------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc--Cch-
Confidence 477888999999999887777555 44434444431 23477889999999999999998888888762 011
Q ss_pred cccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHH
Q 000133 132 GSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLAC 211 (2100)
Q Consensus 132 ~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~ 211 (2100)
+ ..-++..+.+-| ...++.++..|+.+|+++. .++.... .++.+.+++.++++.+|..|+.++.+
T Consensus 83 ----~-~~l~~n~l~kdL---~~~n~~ir~~AL~~L~~i~--~~~~~~~-----l~~~l~~~L~d~~~~VRk~A~~al~~ 147 (591)
T 2vgl_B 83 ----M-AIMAVNSFVKDC---EDPNPLIRALAVRTMGCIR--VDKITEY-----LCEPLRKCLKDEDPYVRKTAAVCVAK 147 (591)
T ss_dssp ----H-HHTTHHHHGGGS---SSSSHHHHHHHHHHHHTCC--SGGGHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHH
T ss_pred ----H-HHHHHHHHHHHc---CCCCHHHHHHHHHHHHcCC--hHHHHHH-----HHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 0 011233333333 3356678888888888875 3333332 36789999999999999999999999
Q ss_pred HhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhh
Q 000133 212 MMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEY 291 (2100)
Q Consensus 212 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~ 291 (2100)
+...+++. +.+.+.++.|.++|.+ .+..++..|+.+|..++..+++........+.++.|+..+...
T Consensus 148 i~~~~p~~---~~~~~~~~~l~~lL~d-~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~--------- 214 (591)
T 2vgl_B 148 LHDINAQM---VEDQGFLDSLRDLIAD-SNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNEC--------- 214 (591)
T ss_dssp HHHSSCCC---HHHHHHHHHHHHTTSC-SCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHC---------
T ss_pred HHhhChhh---cccccHHHHHHHHhCC-CChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCC---------
Confidence 98765532 2235778999999975 4578999999999999876543210001112355566665432
Q ss_pred hHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCC
Q 000133 292 AQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRL 371 (2100)
Q Consensus 292 ~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~ 371 (2100)
++..|-..+.+|.+++...+ . ....+.+.+..++++.+
T Consensus 215 ~~~~q~~il~~l~~l~~~~~----------------~--------------------------~~~~~l~~l~~~l~~~~ 252 (591)
T 2vgl_B 215 TEWGQIFILDCLSNYNPKDD----------------R--------------------------EAQSICERVTPRLSHAN 252 (591)
T ss_dssp CHHHHHHHHHHHHTSCCCSH----------------H--------------------------HHHHHHHHHTTCSCSST
T ss_pred CchHHHHHHHHHHHhCCCCh----------------H--------------------------HHHHHHHHHHHHHcCCC
Confidence 24455555555554432110 0 00134555666666554
Q ss_pred ChHHHHHHHHHHHHHhC----CCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHH
Q 000133 372 PFLVQERTIEALASLYG----NPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLL 447 (2100)
Q Consensus 372 ~~~vq~~aa~aL~~L~~----~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~L 447 (2100)
+ .|+..|+.++..+.. +++....+. ....+.|+.++. +++.+|..|+.+|..+....+..-. ..+..+
T Consensus 253 ~-~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~-----~~~~~~ 324 (591)
T 2vgl_B 253 S-AVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILK-----QEIKVF 324 (591)
T ss_dssp T-HHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTT-----TCTTTT
T ss_pred h-HHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHH-----HHHHhh
Confidence 4 578999999998853 333322221 234566776664 7899999999999999887554211 112222
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCc
Q 000133 448 ISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADA 527 (2100)
Q Consensus 448 v~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~ 527 (2100)
... .+++..++..++..|.+++. +.+... .++.|...+.+.+.+.|..++++++.++...+... ...
T Consensus 325 ~~~-~~d~~~Ir~~al~~L~~l~~--~~nv~~-----iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~-----~~~ 391 (591)
T 2vgl_B 325 FVK-YNDPIYVKLEKLDIMIRLAS--QANIAQ-----VLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSA-----ERC 391 (591)
T ss_dssp SCC-TTSCHHHHHHHHHHHHHTCC--SSTHHH-----HHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHH-----HHH
T ss_pred eec-cCChHHHHHHHHHHHHHHCC--hhhHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHH-----HHH
Confidence 222 24458899999999999984 444333 45678888888899999999999999998654322 236
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchH
Q 000133 528 VPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAV 607 (2100)
Q Consensus 528 i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i 607 (2100)
++.|++++.+..+.+...+..++.++...... ....++
T Consensus 392 v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~------------------------------------------~~~~~v 429 (591)
T 2vgl_B 392 VSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPN------------------------------------------KYESII 429 (591)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCS------------------------------------------SCCTTH
T ss_pred HHHHHHHHcccchHHHHHHHHHHHHHHHHCcc------------------------------------------hHHHHH
Confidence 78999999988888877777777766432111 012346
Q ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 000133 608 ETMIKILS-STKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAA 686 (2100)
Q Consensus 608 ~~Lv~lL~-s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~ 686 (2100)
+.|.+.+. ..++.++..++|+|+..+...++. ...+..+++-+.+.+..++..++.++..+....++...
T Consensus 430 ~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~~------~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~~--- 500 (591)
T 2vgl_B 430 ATLCENLDSLDEPDARAAMIWIVGEYAERIDNA------DELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQ--- 500 (591)
T ss_dssp HHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTTH------HHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTTH---
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHcccccccCH------HHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHH---
Confidence 77777775 457888999999999987654321 13455555556677889999999999999876543210
Q ss_pred HhCCChHHHHHHh-C-CCCHHHHHHHHHHHHHHhcCcHHH
Q 000133 687 VARDALSPLVVLA-G-SPVLEVAEQATCALANLILDSEVS 724 (2100)
Q Consensus 687 ~~~~~l~~Lv~ll-~-~~~~evr~~aa~aL~~L~~~~~~~ 724 (2100)
..+..+++.. . +.++|+|.+|...+.-+..+++..
T Consensus 501 ---~~i~~ll~~~~~d~~d~evrdRA~~y~~ll~~~~~~~ 537 (591)
T 2vgl_B 501 ---ELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDPVTA 537 (591)
T ss_dssp ---HHHHHHHHHHHTTCCCHHHHHHHHHHHTTTTTCTTHH
T ss_pred ---HHHHHHHHHhhhcCCChHHHHHHHHHHHHHCcCHHHH
Confidence 1244455543 4 478999999988776554444333
No 51
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.57 E-value=3.1e-13 Score=180.19 Aligned_cols=464 Identities=13% Similarity=0.113 Sum_probs=324.5
Q ss_pred HHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHH
Q 000133 360 EQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQ 439 (2100)
Q Consensus 360 ~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~ 439 (2100)
..-+.+.|++++....++.....+.......+. ..+...++.++.++++.+++.+..++..++..+++. +
T Consensus 15 ~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~------~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~---~- 84 (591)
T 2vgl_B 15 IFELKAELNNEKKEKRKEAVKKVIAAMTVGKDV------SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDM---A- 84 (591)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCC------GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHH---H-
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCCh------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchH---H-
Confidence 344566677665543333333333322222221 234666888999999999999999999887764442 1
Q ss_pred hCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhH
Q 000133 440 GREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIR 519 (2100)
Q Consensus 440 ~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~ 519 (2100)
.-.+..+.+-+.++++.++..|..+|+++. .++....+ ++.+.+++.+.++.+|..|++++.+++..+++.-
T Consensus 85 -~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~~l-----~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~ 156 (591)
T 2vgl_B 85 -IMAVNSFVKDCEDPNPLIRALAVRTMGCIR--VDKITEYL-----CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV 156 (591)
T ss_dssp -HTTHHHHGGGSSSSSHHHHHHHHHHHHTCC--SGGGHHHH-----HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH
T ss_pred -HHHHHHHHHHcCCCCHHHHHHHHHHHHcCC--hHHHHHHH-----HHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc
Confidence 135678888899999999999999999986 35544333 5779999999999999999999999998665532
Q ss_pred HHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC--------CcHHHHHHHhhcCCcchHHHHHHHHHHHHhcc
Q 000133 520 ACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT--------ATISQLTALLTSDLPESKVYVLDALKSMLSVV 591 (2100)
Q Consensus 520 ~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~--------~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~ 591 (2100)
.+.+.++.|..+|.+.++.++..|+.+|..++.+... ..++.|+..+.+.++-.+....++++.+.
T Consensus 157 ---~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~--- 230 (591)
T 2vgl_B 157 ---EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYN--- 230 (591)
T ss_dssp ---HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSC---
T ss_pred ---ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhC---
Confidence 2346789999999999999999999999999886532 23677787787777777777777665443
Q ss_pred CchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC---ChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHH
Q 000133 592 SFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFET---RKDLRESSIAVKTLWSVMKLLDVGSECILVEAS 668 (2100)
Q Consensus 592 ~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~---~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa 668 (2100)
+.++.. ....++.+..++++.++.++..|++++.++... +++....+ .....++|+.++. ++++++..++
T Consensus 231 ~~~~~~-----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~-~~~~~~~L~~L~~-~d~~vr~~aL 303 (591)
T 2vgl_B 231 PKDDRE-----AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNML-LKKLAPPLVTLLS-GEPEVQYVAL 303 (591)
T ss_dssp CCSHHH-----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHH-HHHTHHHHHHHTT-SCHHHHHHHH
T ss_pred CCChHH-----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHH-HHHHHHHHHHHhc-CCccHHHHHH
Confidence 322211 123478888889999999999999999999742 23333322 2356788887765 7789999999
Q ss_pred HHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCChhHH
Q 000133 669 RCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGK 748 (2100)
Q Consensus 669 ~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~~~ 748 (2100)
.++..+....++. + ...+..+..+. +.+..+|..+...|.++...... ..+++.|..++++.+.+.+
T Consensus 304 ~~l~~i~~~~p~~-----~-~~~~~~~~~~~-~d~~~Ir~~al~~L~~l~~~~nv------~~iv~~L~~~l~~~d~~~r 370 (591)
T 2vgl_B 304 RNINLIVQKRPEI-----L-KQEIKVFFVKY-NDPIYVKLEKLDIMIRLASQANI------AQVLAELKEYATEVDVDFV 370 (591)
T ss_dssp HHHHHHHHHCCST-----T-TTCTTTTSCCT-TSCHHHHHHHHHHHHHTCCSSTH------HHHHHHHHHHTTSSCHHHH
T ss_pred HHHHHHHHhChHH-----H-HHHHHhheecc-CChHHHHHHHHHHHHHHCChhhH------HHHHHHHHHHHhcCCHHHH
Confidence 9999997643321 1 11222222222 34488999999999998744332 2467778888988888999
Q ss_pred HHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcccccchHhHHHHHHHHHHcCCCCCCCCcccceeeccCCCc
Q 000133 749 TLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSI 828 (2100)
Q Consensus 749 ~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~~~~al~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l 828 (2100)
..+++++.++....+.. ....+..++++++...+.+. .+++.++..+.+..+. .....+
T Consensus 371 ~~~v~aI~~la~~~~~~--------~~~~v~~Ll~ll~~~~~~v~-~e~i~~l~~ii~~~p~------------~~~~~v 429 (591)
T 2vgl_B 371 RKAVRAIGRCAIKVEQS--------AERCVSTLLDLIQTKVNYVV-QEAIVVIRDIFRKYPN------------KYESII 429 (591)
T ss_dssp HHHHHHHHHHHTTCHHH--------HHHHHHHHHHHHHTCCHHHH-HHHHHHHHHHHHHSCS------------SCCTTH
T ss_pred HHHHHHHHHHHHhChhH--------HHHHHHHHHHHHcccchHHH-HHHHHHHHHHHHHCcc------------hHHHHH
Confidence 99999999998765422 24567888899887766666 7788888888765443 124567
Q ss_pred hhhhhhhcc-CChhHHHHHHHHHHHHhcCCcccchhcccccccchHHHHHHHhh---cCCcceecchhhHHHHHhh
Q 000133 829 TPIVSSIAD-ATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVIS---CTNPKVKIGGAALLICAAK 900 (2100)
Q Consensus 829 ~~L~~~l~~-~~~~~~~~a~~~L~~L~~~~~~~~g~~~~~~~~~~~~~~~~~l~---s~~~~~r~~~~~~~~~~~~ 900 (2100)
..|.+.+.+ ..+.++..+..+|++++. .+... ..+++.+++ ++++.+|..+.-++.++..
T Consensus 430 ~~L~~~l~~~~~~~~~~~~~wilGey~~--------~~~~~----~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~ 493 (591)
T 2vgl_B 430 ATLCENLDSLDEPDARAAMIWIVGEYAE--------RIDNA----DELLESFLEGFHDESTQVQLTLLTAIVKLFL 493 (591)
T ss_dssp HHHHHTTTTCCSHHHHHHHHHHHHTTCT--------TCTTH----HHHHHHHSTTCSSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHcccc--------cccCH----HHHHHHHHHhhccCCHHHHHHHHHHHHHHHh
Confidence 778888864 468899999999999933 33222 233444432 3567888877666666663
No 52
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.54 E-value=1.2e-11 Score=156.47 Aligned_cols=444 Identities=16% Similarity=0.125 Sum_probs=299.9
Q ss_pred hHHHHHhhcCCC-HHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCCh
Q 000133 97 IPPLLGLLKSSS-AEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTE 175 (2100)
Q Consensus 97 i~~Lv~lL~s~~-~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~ 175 (2100)
|+.|+.-+.+.. .+-|+.|..+|+.++. ++ +..+..+++|.|+..|+... .|.++-..++.+|.++....+
T Consensus 23 I~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk----~y---~~~Vg~~~l~~li~~L~~d~-~D~e~v~~~LetL~~l~~~~~ 94 (651)
T 3grl_A 23 IQKLCDRVASSTLLDDRRNAVRALKSLSK----KY---RLEVGIQAMEHLIHVLQTDR-SDSEIIGYALDTLYNIISNDE 94 (651)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHTTT----TT---TTHHHHHTHHHHHHHHHSCT-TCHHHHHHHHHHHHHHHCCC-
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHH----Hh---HHHhhhhhHHHHHHHHhccc-ccHHHHHHHHHHHHHHhCCCC
Confidence 555566665444 6789999999999986 44 23456788999999998865 444555567888888654332
Q ss_pred h---------------hHH--H-HHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcc-hhhHHh-hhchHHHHHHH
Q 000133 176 G---------------FWA--A-TVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVS-VCSRVL-AADATKQLLKL 235 (2100)
Q Consensus 176 ~---------------~~~--~-i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~-~~~~i~-~~g~i~~Lv~l 235 (2100)
. .|- . +.+.+.|+.|+.+|++.+..+|.++..+|..++...+. ....+. ..+|++.|+.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~l 174 (651)
T 3grl_A 95 EEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDL 174 (651)
T ss_dssp -------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGG
T ss_pred cccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHH
Confidence 1 111 1 34678899999999999999999999999999987776 556666 46999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhh
Q 000133 236 LGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVIS 315 (2100)
Q Consensus 236 L~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~ 315 (2100)
|.++. ..+|..+...|.+|+.++++.++.++-+|+++.|+..+....
T Consensus 175 L~d~r-E~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg-------------------------------- 221 (651)
T 3grl_A 175 LADSR-EVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEG-------------------------------- 221 (651)
T ss_dssp GGCSS-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHT--------------------------------
T ss_pred HhCch-HHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcC--------------------------------
Confidence 99876 479999999999999999999999999999999999884311
Q ss_pred hccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchh
Q 000133 316 SLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIK 395 (2100)
Q Consensus 316 ~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~ 395 (2100)
T Consensus 222 -------------------------------------------------------------------------------- 221 (651)
T 3grl_A 222 -------------------------------------------------------------------------------- 221 (651)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHH------HHH---HHHHHH
Q 000133 396 LENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQ------QQE---CSVALL 466 (2100)
Q Consensus 396 l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~------v~~---~A~~aL 466 (2100)
+ .+...+...++..|.||...|+.++..+.+.|+++.|..+++.+.+. ... .+..++
T Consensus 222 -----~---------~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iI 287 (651)
T 3grl_A 222 -----N---------SDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLV 287 (651)
T ss_dssp -----G---------GGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHH
T ss_pred -----C---------CccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHH
Confidence 0 00113344566677788888787888888888898888888754321 112 245566
Q ss_pred HHhccC------CcccHHHHHhcCChHHHHHhccCC--CHHHHHHHHHHHHHHhcCChhhHHHHHhCC-----cHHHHHH
Q 000133 467 CLLSNE------NDDSKWAITAAGGIPPLVQILESG--SAKAKEDSASILRNLCNHSEDIRACVESAD-----AVPALLW 533 (2100)
Q Consensus 467 ~nLs~~------~~~~~~~i~~~g~i~~Lv~lL~~~--~~~vre~A~~aL~~L~~~~~~~~~~i~~~g-----~i~~Lv~ 533 (2100)
.-|... ...++..+.+.|+++.|++++... ...++..|..+++.+...++.++..+.+.. ..|+++.
T Consensus 288 rlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~ 367 (651)
T 3grl_A 288 RVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVV 367 (651)
T ss_dssp HHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHH
T ss_pred HHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHH
Confidence 666543 235688999999999999998765 788999999999999999999999988743 2244444
Q ss_pred H----hhc-CChhHHHHHHHHHHHHhcCCCCCcHHHHHH-HhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchH
Q 000133 534 L----LKN-GSANGKEIAAKTLNHLIHKSDTATISQLTA-LLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAV 607 (2100)
Q Consensus 534 l----L~~-~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~-lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i 607 (2100)
+ +.+ .....|-.|+.++....+..+.+.. .++. ++...... ..+ . .. .-
T Consensus 368 lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~-~i~~~llp~~~~~-----------------~~~----~-~s--~g 422 (651)
T 3grl_A 368 LLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQG-EIVSTLLPSTIDA-----------------TGN----T-VS--AG 422 (651)
T ss_dssp HHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHH-HHHHTTSSCCCCC-----------------TTS----S-SC--HH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHH-HHHHhcCCccccc-----------------CCC----C-CC--cc
Confidence 3 333 2345666666666666553321100 0110 01000000 000 0 00 11
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc------C-----chHHHHHhh-cCCCHHHHHHHHHHHHHHh
Q 000133 608 ETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAV------K-----TLWSVMKLL-DVGSECILVEASRCLAAIF 675 (2100)
Q Consensus 608 ~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~------g-----~v~~Lv~lL-~~~~~~v~~~aa~aL~~L~ 675 (2100)
..|...+.+.++.--.-|+.+|.++..++++.++..... | .++.+...| .+.++++...-+.-|....
T Consensus 423 ~ll~~~l~s~d~~~~wfAavil~hll~~n~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL 502 (651)
T 3grl_A 423 QLLCGGLFSTDSLSNWCAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWL 502 (651)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccCchHHHHHHHHHHHHHHcCCHHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 224455666777666679999999999887776665441 1 355556666 3445666666666666666
Q ss_pred cCCchhHHHHHHhCCChHHHHHHhC
Q 000133 676 LSVRENREVAAVARDALSPLVVLAG 700 (2100)
Q Consensus 676 ~~~~~~~~~~~~~~~~l~~Lv~ll~ 700 (2100)
.+.+..-+.-+-+...++.|++.+.
T Consensus 503 ~e~p~AV~dFL~~~s~l~~L~~~i~ 527 (651)
T 3grl_A 503 SNCPIAVTHFLHNSANVPFLTGQIA 527 (651)
T ss_dssp TTCHHHHHHHHHSTTHHHHHHHHHH
T ss_pred hCChHHHHHHHcCCchHHHHHHHHH
Confidence 6666544442333446888887764
No 53
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.47 E-value=5.1e-11 Score=159.28 Aligned_cols=485 Identities=13% Similarity=0.053 Sum_probs=305.7
Q ss_pred chHHHHHHHhcCCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCccccc
Q 000133 55 AVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSK 134 (2100)
Q Consensus 55 ~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~ 134 (2100)
+....++++.+.+-+.|.-+--++..++.+++.-.. -.+..|.+-|.++++..|..|+++|.++.. ..
T Consensus 71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~----l~in~l~kDL~~~n~~vr~lAL~~L~~i~~----~~---- 138 (618)
T 1w63_A 71 GQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHL----LMTNCIKNDLNHSTQFVQGLALCTLGCMGS----SE---- 138 (618)
T ss_dssp GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHH----HHHHHHHHHHSCSSSHHHHHHHHHHHHHCC----HH----
T ss_pred hHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHH----HHHHHHHHhcCCCCHhHHHHHHHHHHhcCC----HH----
Confidence 456778888888888888877788888765432111 246788889999999999999999999885 22
Q ss_pred chhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhh
Q 000133 135 IFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMME 214 (2100)
Q Consensus 135 ~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~ 214 (2100)
+ -..++|.+...|.+ .++.|+..|+.++.++....++. ++ +.++.+..+|.+.|+.++..|+.+|..++.
T Consensus 139 -~-~~~l~~~l~~~L~~---~~~~VRk~A~~al~~l~~~~p~~----v~-~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~ 208 (618)
T 1w63_A 139 -M-CRDLAGEVEKLLKT---SNSYLRKKAALCAVHVIRKVPEL----ME-MFLPATKNLLNEKNHGVLHTSVVLLTEMCE 208 (618)
T ss_dssp -H-HHHHHHHHHHHHHS---CCHHHHHHHHHHHHHHHHHCGGG----GG-GGGGGTTTSTTCCCHHHHHHHHHHHHHHCC
T ss_pred -H-HHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHHHHChHH----HH-HHHHHHHHHhCCCCHhHHHHHHHHHHHHHH
Confidence 2 24567778888876 46789999999999997644432 22 678888999999999999999999988876
Q ss_pred cCcchhhHHhhhchHHHHHHHhcC--------------CCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhc
Q 000133 215 EDVSVCSRVLAADATKQLLKLLGS--------------GNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATI 280 (2100)
Q Consensus 215 ~~~~~~~~i~~~g~i~~Lv~lL~~--------------~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~ 280 (2100)
.+++....+ ...++.|+++|.+ ..++-.+.....+|+.++..+++.... .++.|..++.
T Consensus 209 ~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~-----~~~~L~~l~~ 281 (618)
T 1w63_A 209 RSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEA-----MNDILAQVAT 281 (618)
T ss_dssp SHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHT-----THHHHHHHHH
T ss_pred hChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHH-----HHHHHHHHHh
Confidence 543221222 2557777777653 124567777888888887655433221 1222323221
Q ss_pred CCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhH
Q 000133 281 APSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVE 360 (2100)
Q Consensus 281 ~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~ 360 (2100)
..+ ..+ .....+
T Consensus 282 ~~~--~~~-~~~~aV----------------------------------------------------------------- 293 (618)
T 1w63_A 282 NTE--TSK-NVGNAI----------------------------------------------------------------- 293 (618)
T ss_dssp TSC--CSS-THHHHH-----------------------------------------------------------------
T ss_pred ccc--ccc-chHHHH-----------------------------------------------------------------
Confidence 110 000 011222
Q ss_pred HHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHh
Q 000133 361 QTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQG 440 (2100)
Q Consensus 361 ~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~ 440 (2100)
...++.++..+...+... ..++..|..++.++++.+|..|+.+|..+...++. .+.
T Consensus 294 ---------------~~ea~~~i~~l~~~~~l~-----~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~---~~~- 349 (618)
T 1w63_A 294 ---------------LYETVLTIMDIKSESGLR-----VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN---AVQ- 349 (618)
T ss_dssp ---------------HHHHHHHHHHSCCCHHHH-----HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH---HHG-
T ss_pred ---------------HHHHHHHHHhcCCCHHHH-----HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH---HHH-
Confidence 233333333332111110 12455667777778888999999999888876432 222
Q ss_pred CCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCC-hhhH
Q 000133 441 REGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHS-EDIR 519 (2100)
Q Consensus 441 ~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~-~~~~ 519 (2100)
.....++.++.+++..++..|..+|..++. ..+...+ ++.|...+.+.+.+.|..++.+|+.++..- +...
T Consensus 350 -~~~~~i~~~l~d~d~~Ir~~alelL~~l~~--~~nv~~i-----v~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~ 421 (618)
T 1w63_A 350 -RHRSTIVDCLKDLDVSIKRRAMELSFALVN--GNNIRGM-----MKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKR 421 (618)
T ss_dssp -GGHHHHHHGGGSSCHHHHHHHHHHHHHHCC--SSSTHHH-----HHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred -HHHHHHHHHccCCChhHHHHHHHHHHHHcc--cccHHHH-----HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHH
Confidence 356678888888899999999999999984 3433333 467888888888999999999999998753 2232
Q ss_pred HHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHH
Q 000133 520 ACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILRE 599 (2100)
Q Consensus 520 ~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~ 599 (2100)
+ .++.|+++++.....++..+...+..+... .++.+..
T Consensus 422 ~------~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~----------------~p~l~~~-------------------- 459 (618)
T 1w63_A 422 W------HIDTIMRVLTTAGSYVRDDAVPNLIQLITN----------------SVEMHAY-------------------- 459 (618)
T ss_dssp H------HHHHHHHHHHHTGGGSCSSHHHHHHHHHHH----------------SCSTHHH--------------------
T ss_pred H------HHHHHHHHHHhccchhHHHHHHHHHHHHhc----------------ChhHHHH--------------------
Confidence 2 357778888765544444444444433221 1222221
Q ss_pred hhhccchHHHHHHHhcC--CCHHHHHHHHHHHHHHhcCChhh-HH-----HHHhcCchHHHHHhhc--CCCHHHHHHHHH
Q 000133 600 GSAANDAVETMIKILSS--TKEETQAKSASALAGIFETRKDL-RE-----SSIAVKTLWSVMKLLD--VGSECILVEASR 669 (2100)
Q Consensus 600 ~i~~~~~i~~Lv~lL~s--~~~~~~~~Aa~aL~~L~~~~~~~-~~-----~~~~~g~v~~Lv~lL~--~~~~~v~~~aa~ 669 (2100)
+++.|++++.+ .++.+...++|+|+..+..-.+. .+ .+....+++.|..++. ..++.++..++.
T Consensus 460 ------~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lt 533 (618)
T 1w63_A 460 ------TVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALT 533 (618)
T ss_dssp ------HHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHH
T ss_pred ------HHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 25666666654 34455567899999887420000 00 0000123555556554 567899999999
Q ss_pred HHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcH
Q 000133 670 CLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSE 722 (2100)
Q Consensus 670 aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~ 722 (2100)
++..++...++.... ....|-....+.++|+|.+|...+.-+..+++
T Consensus 534 a~~Kl~~~~~~~~~~------l~~~L~~~~~~~d~evrdRA~~y~~ll~~~~~ 580 (618)
T 1w63_A 534 AIMKLSTRFTCTVNR------IKKVVSIYGSSIDVELQQRAVEYNALFKKYDH 580 (618)
T ss_dssp HHHHHHTTCSSCHHH------HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHhCcchHHH------HHHHHHHhcCCCCHHHHHHHHHHHHHHcCcHH
Confidence 999998876532211 12233445678899999999987765555443
No 54
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.45 E-value=3.1e-12 Score=154.00 Aligned_cols=253 Identities=14% Similarity=0.034 Sum_probs=203.0
Q ss_pred hCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhH
Q 000133 440 GREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIR 519 (2100)
Q Consensus 440 ~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~ 519 (2100)
+.+.++.|+..|+++++.++..|+++|+++.. + +.++.|+++|.++++.+|..|+++|..+........
T Consensus 21 ~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~ 89 (280)
T 1oyz_A 21 KKLNDDELFRLLDDHNSLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED 89 (280)
T ss_dssp HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH
T ss_pred HHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC--c---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch
Confidence 45789999999999999999999999999872 2 368999999999999999999999999875322111
Q ss_pred HHHHhCCcHHHHH-HHhhcCChhHHHHHHHHHHHHhcCC---CCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchh
Q 000133 520 ACVESADAVPALL-WLLKNGSANGKEIAAKTLNHLIHKS---DTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSD 595 (2100)
Q Consensus 520 ~~i~~~g~i~~Lv-~lL~~~~~~~~~~Aa~aL~~L~~~~---~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~ 595 (2100)
..++.|. .++++.++.++..++++|+++.... .+..++.|+.++.+.++.+|..+..+|+.+.
T Consensus 90 ------~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~------- 156 (280)
T 1oyz_A 90 ------NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIN------- 156 (280)
T ss_dssp ------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------
T ss_pred ------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC-------
Confidence 1233444 2456788999999999999997432 3467888999999999999999999998543
Q ss_pred HHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 000133 596 ILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIF 675 (2100)
Q Consensus 596 ~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~ 675 (2100)
...+++.|+.++.++++.+|..|+++|.++....+ .+++.|+.++.++++.++..++.+|+.+.
T Consensus 157 -------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 157 -------DKATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp ---------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred -------CHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 23469999999999999999999999999964433 35789999999999999999999999883
Q ss_pred cCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCCh-hHHHHHHHH
Q 000133 676 LSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTI-SGKTLAAAA 754 (2100)
Q Consensus 676 ~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~-~~~~~Aa~a 754 (2100)
...+++.|+.++.+++ +|..++.+|+.+-. ..+++.|.++++++++ +....+..+
T Consensus 221 ------------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~----------~~~~~~L~~~l~~~~~~~~~~~~~~~ 276 (280)
T 1oyz_A 221 ------------DKRVLSVLCDELKKNT--VYDDIIEAAGELGD----------KTLLPVLDTMLYKFDDNEIITSAIDK 276 (280)
T ss_dssp ------------CGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC----------GGGHHHHHHHHTTSSCCHHHHHHHHH
T ss_pred ------------CHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc----------hhhhHHHHHHHhcCCCcHHHHHHHHH
Confidence 2458999999998865 89999999998753 3688999999977544 466666665
Q ss_pred HH
Q 000133 755 IA 756 (2100)
Q Consensus 755 L~ 756 (2100)
|.
T Consensus 277 l~ 278 (280)
T 1oyz_A 277 LK 278 (280)
T ss_dssp HT
T ss_pred hh
Confidence 53
No 55
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.43 E-value=4.5e-12 Score=152.57 Aligned_cols=256 Identities=14% Similarity=0.075 Sum_probs=203.3
Q ss_pred ccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccH
Q 000133 398 NSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSK 477 (2100)
Q Consensus 398 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~ 477 (2100)
....++.|+..|.++++.+|..|+++|.++... +.++.|+.+++++++.++..|+++|+.+.. .+...
T Consensus 21 ~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~~-----------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~-~~~~~ 88 (280)
T 1oyz_A 21 KKLNDDELFRLLDDHNSLKRISSARVLQLRGGQ-----------DAVRLAIEFCSDKNYIRRDIGAFILGQIKI-CKKCE 88 (280)
T ss_dssp HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCCH-----------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCC-CTTTH
T ss_pred HHhhHHHHHHHHHcCCHHHHHHHHHHHHccCCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcc-ccccc
Confidence 456789999999999999999999999988632 578999999999999999999999999974 22211
Q ss_pred HHHHhcCChHHHH-HhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcC
Q 000133 478 WAITAAGGIPPLV-QILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHK 556 (2100)
Q Consensus 478 ~~i~~~g~i~~Lv-~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~ 556 (2100)
.. .++.|. .++.++++.+|..++++|++++..++... ...++.|+.+++++++.++..|+.+|+++..
T Consensus 89 ~~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~- 157 (280)
T 1oyz_A 89 DN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISVIND- 157 (280)
T ss_dssp HH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC---
T ss_pred hH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-
Confidence 11 223333 24577899999999999999985433222 2367999999999999999999999998753
Q ss_pred CCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Q 000133 557 SDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETR 636 (2100)
Q Consensus 557 ~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~ 636 (2100)
+..++.|+.++.++++.+|..+..+|+.+... ...+++.|+.++.++++.+|..|+++|+++..
T Consensus 158 --~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~-- 221 (280)
T 1oyz_A 158 --KATIPLLINLLKDPNGDVRNWAAFAININKYD------------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD-- 221 (280)
T ss_dssp ---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC------------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC--
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC------------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC--
Confidence 56899999999999999999999999865311 23458999999999999999999999999873
Q ss_pred hhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCC-CCHHHHHHHHHHHH
Q 000133 637 KDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGS-PVLEVAEQATCALA 715 (2100)
Q Consensus 637 ~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~-~~~evr~~aa~aL~ 715 (2100)
+ ..++.|+.++.+++ ++..++.+|+.+.. ..+++.|.+++.+ .++++...+..+|.
T Consensus 222 ~---------~~~~~L~~~l~d~~--vr~~a~~aL~~i~~------------~~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 222 K---------RVLSVLCDELKKNT--VYDDIIEAAGELGD------------KTLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp G---------GGHHHHHHHHTSSS--CCHHHHHHHHHHCC------------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred H---------hhHHHHHHHhcCcc--HHHHHHHHHHhcCc------------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 2 57899999998765 88999999998832 2578999999865 56777777777664
No 56
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.35 E-value=1.9e-10 Score=153.80 Aligned_cols=464 Identities=13% Similarity=0.068 Sum_probs=322.2
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHH
Q 000133 401 AKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAI 480 (2100)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i 480 (2100)
+....+.++.+++...++.+.-++..++..+++. +. -.+..|.+-++++++.++..|+.+|+++.. ++..
T Consensus 71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~---~~--l~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~~~--- 140 (618)
T 1w63_A 71 GQLECLKLIASQKFTDKRIGYLGAMLLLDERQDV---HL--LMTNCIKNDLNHSTQFVQGLALCTLGCMGS--SEMC--- 140 (618)
T ss_dssp GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHH---HH--HHHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HHHH---
T ss_pred hHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHH---HH--HHHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HHHH---
Confidence 4455677888999999998888888888765432 11 356778888899999999999999999973 3321
Q ss_pred HhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC-
Q 000133 481 TAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT- 559 (2100)
Q Consensus 481 ~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~- 559 (2100)
...++.+.++|.+.++.+|..|+.++.++...+++.. .+.++.+..++.+.++.++..|+.+|..++.....
T Consensus 141 --~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~ 213 (618)
T 1w63_A 141 --RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDM 213 (618)
T ss_dssp --HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHH
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHH
Confidence 2357889999999999999999999999997666532 25778888899999999999999999999865321
Q ss_pred -----CcHHHHHHHhhc---------------CCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhc----
Q 000133 560 -----ATISQLTALLTS---------------DLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILS---- 615 (2100)
Q Consensus 560 -----~~i~~L~~lL~~---------------~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~---- 615 (2100)
..+|.++.+|.+ .++-.+...+++|+.++... ++ .... ..+.|..++.
T Consensus 214 ~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~--~~-~~~~-----~~~~L~~l~~~~~~ 285 (618)
T 1w63_A 214 LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND--DD-SSEA-----MNDILAQVATNTET 285 (618)
T ss_dssp HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTC--HH-HHHT-----THHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCC--HH-HHHH-----HHHHHHHHHhcccc
Confidence 456777777664 24556677778887765432 22 1111 2445555543
Q ss_pred --CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChH
Q 000133 616 --STKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALS 693 (2100)
Q Consensus 616 --s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~ 693 (2100)
+.+..+...|++++.++... +..+ ..++..|.+++.++++.++..|+.+|..++...+ . .+ .....
T Consensus 286 ~~~~~~aV~~ea~~~i~~l~~~-~~l~-----~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p----~-~~-~~~~~ 353 (618)
T 1w63_A 286 SKNVGNAILYETVLTIMDIKSE-SGLR-----VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH----N-AV-QRHRS 353 (618)
T ss_dssp SSTHHHHHHHHHHHHHHHSCCC-HHHH-----HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH----H-HH-GGGHH
T ss_pred ccchHHHHHHHHHHHHHhcCCC-HHHH-----HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH----H-HH-HHHHH
Confidence 34568999999999998653 3222 1467889999998888999999999999965422 1 12 34678
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCccchhHhhhhh
Q 000133 694 PLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVN 773 (2100)
Q Consensus 694 ~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~ 773 (2100)
.++..+++++..+|..|...|..++..... ..+++.|...+.+.+.+.+..+..++.++....+..
T Consensus 354 ~i~~~l~d~d~~Ir~~alelL~~l~~~~nv------~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~-------- 419 (618)
T 1w63_A 354 TIVDCLKDLDVSIKRRAMELSFALVNGNNI------RGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPS-------- 419 (618)
T ss_dssp HHHHGGGSSCHHHHHHHHHHHHHHCCSSST------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCC--------
T ss_pred HHHHHccCCChhHHHHHHHHHHHHcccccH------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCcc--------
Confidence 899999999999999999999999854332 235688888888889999999999999998754332
Q ss_pred ccCcHHHHHHhhhhcccccchHhHHHHHHHHHHcCCCCCCCCcccceeeccCCCchhhhhhhcc--CChhHHHHHHHHHH
Q 000133 774 RAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIAD--ATPLLQDKAIEILS 851 (2100)
Q Consensus 774 ~~g~l~~li~~l~s~~~~v~~~~al~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~--~~~~~~~~a~~~L~ 851 (2100)
....+..++++++.....+. .+++..+..+....+. .....+..|.+.+.+ .++.+...+.++|+
T Consensus 420 ~~~~v~~ll~lL~~~~~~v~-~~~~~~l~~ii~~~p~------------l~~~~v~~L~~~l~~~~~~~~~~~~~~wilG 486 (618)
T 1w63_A 420 KRWHIDTIMRVLTTAGSYVR-DDAVPNLIQLITNSVE------------MHAYTVQRLYKAILGDYSQQPLVQVAAWCIG 486 (618)
T ss_dssp HHHHHHHHHHHHHHTGGGSC-SSHHHHHHHHHHHSCS------------THHHHHHHHHHHHHHCCSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhH-HHHHHHHHHHHhcChh------------HHHHHHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 13346778888887766666 7778888888765443 012345566667765 34445557899999
Q ss_pred HHhcCCcccchhcccc-----------cccchHHHHHHHhh--cCCcceecchhhHHHHHhhhchhhHHhhhhccccchh
Q 000133 852 RLCRDQPAVLGDEVTG-----------ASGCISSIARRVIS--CTNPKVKIGGAALLICAAKVNHQRIVEDLNHSNSCAP 918 (2100)
Q Consensus 852 ~L~~~~~~~~g~~~~~-----------~~~~~~~~~~~~l~--s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 918 (2100)
++ |+.+.. .......++..+++ ++++.+|.....++++++--. + ..
T Consensus 487 Ey--------~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~--~--------~~--- 545 (618)
T 1w63_A 487 EY--------GDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRF--T--------CT--- 545 (618)
T ss_dssp HH--------HHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTC--S--------SC---
T ss_pred hh--------HHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhC--c--------ch---
Confidence 99 333322 01122345555665 578899998888887777431 0 11
Q ss_pred hHHHHHHHHhhhcCCCCcCCCCChhHHHHHhhhhc
Q 000133 919 LIQSLVTMLSVVEASPLRNQGNDDKEAISIYRYTS 953 (2100)
Q Consensus 919 ~v~~Lv~~l~~~~~~~~~~~~~~~~~~~~~l~~l~ 953 (2100)
...+..+|.....+ .+.+.+-.|...++.|+
T Consensus 546 -~~~l~~~L~~~~~~---~d~evrdRA~~y~~ll~ 576 (618)
T 1w63_A 546 -VNRIKKVVSIYGSS---IDVELQQRAVEYNALFK 576 (618)
T ss_dssp -HHHHHHHHHHHTTC---SCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHc
Confidence 22333334433322 35566667777777643
No 57
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.26 E-value=1.5e-10 Score=132.74 Aligned_cols=190 Identities=16% Similarity=0.153 Sum_probs=162.8
Q ss_pred ccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccH
Q 000133 398 NSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSK 477 (2100)
Q Consensus 398 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~ 477 (2100)
..+.++.|+.+|+++++.+|..|+.+|..+... ++++.|+.+++++++.++..|+.+|+.+.. +
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~-----------~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--~--- 80 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE-----------RAVEPLIKALKDEDAWVRRAAADALGQIGD--E--- 80 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-----------GGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--G---
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCc-----------cHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H---
Confidence 356788999999999999999999999886542 689999999999999999999999999863 2
Q ss_pred HHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCC
Q 000133 478 WAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKS 557 (2100)
Q Consensus 478 ~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~ 557 (2100)
++++.|+++|.++++.+|..|+++|.++.. ...++.|+.+++++++.++..|+.+|+++.
T Consensus 81 ------~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--- 140 (211)
T 3ltm_A 81 ------RAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG--- 140 (211)
T ss_dssp ------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---
T ss_pred ------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---
Confidence 378999999999999999999999999864 247899999999999999999999999994
Q ss_pred CCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCh
Q 000133 558 DTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRK 637 (2100)
Q Consensus 558 ~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~ 637 (2100)
++..++.|..++.+.++.+|..+..+|+.+. ...+++.|..++.++++.+|..|..+|.++.....
T Consensus 141 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--------------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 141 DERAVEPLIKALKDEDGWVRQSAADALGEIG--------------GERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------------SHHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------------chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 4678999999999999999999999999652 23458899999999999999999999999987643
No 58
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.22 E-value=2.7e-10 Score=129.41 Aligned_cols=185 Identities=17% Similarity=0.155 Sum_probs=162.7
Q ss_pred cccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHH
Q 000133 399 SEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKW 478 (2100)
Q Consensus 399 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~ 478 (2100)
.+..+.++.+|+++++.+|..|+.+|..+... +.++.|+.+++++++.++..|+.+|+.+.. +
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~-----------~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--~---- 75 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE-----------RAVEPLIKALKDEDAWVRRAAADALGQIGD--E---- 75 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G----
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCCh-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H----
Confidence 45678899999999999999999999986542 678999999999999999999999999863 2
Q ss_pred HHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC
Q 000133 479 AITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD 558 (2100)
Q Consensus 479 ~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~ 558 (2100)
++++.|+.+|.++++.+|..|+++|.++.. ...++.|+.++++.++.++..|+++|+++. +
T Consensus 76 -----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~---~ 136 (201)
T 3ltj_A 76 -----RAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG---D 136 (201)
T ss_dssp -----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT---C
T ss_pred -----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---C
Confidence 378999999999999999999999999864 237899999999999999999999999994 4
Q ss_pred CCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 000133 559 TATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIF 633 (2100)
Q Consensus 559 ~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~ 633 (2100)
+..++.|..++.+.++.+|..+..+|+.+. ...+++.|..++.++++.+|..|..+|.++.
T Consensus 137 ~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~--------------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 ERAVEPLIKALKDEDGWVRQSAADALGEIG--------------GERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------------SHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------------chhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999652 2345899999999999999999999998875
No 59
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.19 E-value=7.6e-10 Score=143.33 Aligned_cols=374 Identities=12% Similarity=0.058 Sum_probs=247.1
Q ss_pred cCcHHHHHHHHhcC--CHHHHHHHHHHHHHhhcchhh-h--------hhhhh---cCChHHHHHhhccCChhhHHHHHHH
Q 000133 1230 FAAVSQLVAVLRLG--GRGARYSAAKALESLFSADHI-R--------NAESA---RQAVQPLVEILNTGLEREQHAAIAA 1295 (2100)
Q Consensus 1230 ~~al~~Li~~L~~~--~~~~r~~Aa~aL~~L~~~~~~-~--------~~i~~---~~~i~~Lv~lL~~~~~~~~~~A~~a 1295 (2100)
++.+..|..+|.++ +...|..|+..|.++...... . ..+.. ...-..|+..|.+.+... +.++.+
T Consensus 34 ~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~ 112 (462)
T 1ibr_B 34 PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQC 112 (462)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHH
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHH
Confidence 46778888888876 468899999999988542110 0 01111 122356778888877777 778888
Q ss_pred HHHhhcCCchhhHHHHhhhcchhHHHHHHHhhcC-ChhhHHHHHHHHHHHhcCc--chHHHHHhhcChHHHHHHHhcC--
Q 000133 1296 LVRLLSENPSRALAVADVEMNAVDVLCRILSSNC-SMELKGDAAELCGVLFGNT--RIRSTVAAARCVEPLVSLLVTE-- 1370 (2100)
Q Consensus 1296 L~~La~~~~~~~~~~~~v~~gal~~L~~lL~~~~-~~~~~~~a~~~L~~L~~~~--~~r~~~~~~~~i~~Lv~lL~~~-- 1370 (2100)
+..++....... .-.+.++.|+..+.+.. +..+++.+..++..++... +.. .......++.++..+.+.
T Consensus 113 i~~ia~~~~~~~-----~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~-~~~~~~ll~~l~~~l~~~~~ 186 (462)
T 1ibr_B 113 VAGIACAEIPVN-----QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL-QDKSNEILTAIIQGMRKEEP 186 (462)
T ss_dssp HHHHHHHHGGGT-----CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGT-GGGHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHhcccc-----ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhh-HhHHHHHHHHHHHHhCCCCC
Confidence 888885321110 01357888999887743 6789999999999988642 211 111234667788888887
Q ss_pred CchHHHHHHHHHHHhcc--cHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCchhhHHHHhcCcHHHHHH
Q 000133 1371 FSPAQHSVVRALDKLVD--DEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLD 1448 (2100)
Q Consensus 1371 ~~~~~~~A~~aL~~L~~--~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k~~i~~~~~i~~lv~ 1448 (2100)
++.+|..|+.++.++.. .+....+....-+++.|...+.+.+..+|+.++.+|..++...++.-........++.++.
T Consensus 187 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~ 266 (462)
T 1ibr_B 187 SNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIE 266 (462)
T ss_dssp CHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999998652 1111111111124677778888999999999999999998765321111111157777888
Q ss_pred HhccCChhHHHHHHHHHHHHHhcc------------------CCcccc---cccCchHHHHHHhccCC-----CCchhHh
Q 000133 1449 ILHEAPDFLCSAFAELLRILTNNA------------------GIAKGP---SAAKVVEPLFLLLTRSE-----FGPDGQH 1502 (2100)
Q Consensus 1449 ~L~~~~~~~~~~aa~lL~~Ls~~~------------------~~~~~~---~~~~~v~~Ll~ll~~~~-----~~~~~~~ 1502 (2100)
.+.+.++.++..+.+++..++... ...... .....++.++..+...+ +++..++
T Consensus 267 ~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~ 346 (462)
T 1ibr_B 267 AMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCK 346 (462)
T ss_dssp HHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHH
T ss_pred HHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHH
Confidence 888888888988888887776542 000000 01345566666665432 2356778
Q ss_pred HHHHHHHHhhcCCCcccccccccCCChHhhhhccCCCCHHHHHHHHHHHHHhhcccc---ccccccccCchHHHHHHhcc
Q 000133 1503 SALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQ---LQKDPVTQQVIGPLIRVLGS 1579 (2100)
Q Consensus 1503 ~A~~~L~nL~~~~~~~~~~~~~~~~~l~~Lv~~L~~~~~~vq~~a~~aL~~l~~~~~---~~~~l~~~g~i~~Lv~lL~s 1579 (2100)
.|..+|..+...... . .-..+++.+...|.+.+..+|..++.+|+.++.... ++..+ ..+++.|+.+|++
T Consensus 347 ~a~~~L~~l~~~~~~--~---~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d 419 (462)
T 1ibr_B 347 AAGVCLMLLATCCED--D---IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKD 419 (462)
T ss_dssp HHHHHHHHHHHHTTT--T---HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGC
T ss_pred HHHHHHHHHHHhccH--H---HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcC
Confidence 899999888644321 1 112356667778889999999999999999986322 22222 4688999999999
Q ss_pred CCHHHHHHHHHHHHHhhcCChhHHHhccChHHHHHHhc
Q 000133 1580 GIHILQQRAVKALVSIALTWPNEIAKEGGVTELSKIIL 1617 (2100)
Q Consensus 1580 ~~~~vr~~Al~AL~~Ls~~~~n~l~~~G~i~~Ll~lL~ 1617 (2100)
.++.+|..|+.+|.+++..-+..+.....+++++..|.
T Consensus 420 ~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll 457 (462)
T 1ibr_B 420 PSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLI 457 (462)
T ss_dssp SCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHH
Confidence 99999999999999999654332212234555555443
No 60
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.19 E-value=2.6e-10 Score=130.74 Aligned_cols=190 Identities=24% Similarity=0.258 Sum_probs=160.4
Q ss_pred hhcChHHHHHHHhcCCchHHHHHHHHHHHhcccHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCchhhH
Q 000133 1356 AARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKL 1435 (2100)
Q Consensus 1356 ~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k~ 1435 (2100)
....++.|+..|.++++.+|..|+.+|..+.. .++++.|+.+++++++.+|..|+.+|+.+....
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~----- 81 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGDER----- 81 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-----
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-----
Confidence 35688999999999999999999999998864 357899999999999999999999999997543
Q ss_pred HHHhcCcHHHHHHHhccCChhHHHHHHHHHHHHHhccCCcccccccCchHHHHHHhccCCCCchhHhHHHHHHHHhhcCC
Q 000133 1436 EMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHP 1515 (2100)
Q Consensus 1436 ~i~~~~~i~~lv~~L~~~~~~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~~~~~~~~~A~~~L~nL~~~~ 1515 (2100)
.++.+++.|.+++..++..++..|..+.. ...++.|+.++.+++ +.++..|..+|.++
T Consensus 82 ------~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~--~~vr~~a~~aL~~~---- 139 (211)
T 3ltm_A 82 ------AVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDED--WFVRIAAAFALGEI---- 139 (211)
T ss_dssp ------GHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSS--HHHHHHHHHHHHHH----
T ss_pred ------HHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCC--HHHHHHHHHHHHHc----
Confidence 78999999999998999988877755532 135889999998766 88999999999985
Q ss_pred CcccccccccCCChHhhhhccCCCCHHHHHHHHHHHHHhhccccccccccccCchHHHHHHhccCCHHHHHHHHHHHHHh
Q 000133 1516 QCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSI 1595 (2100)
Q Consensus 1516 ~~~~~~~~~~~~~l~~Lv~~L~~~~~~vq~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~lL~s~~~~vr~~Al~AL~~L 1595 (2100)
.....++.|+.+|.++++.+|..++.+|+++.. ..+++.|..+++++++.+|..|..+|.++
T Consensus 140 --------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 140 --------GDERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH 201 (211)
T ss_dssp --------CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred --------CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 345678999999999999999999999999964 35778999999999999999999999999
Q ss_pred hcCCh
Q 000133 1596 ALTWP 1600 (2100)
Q Consensus 1596 s~~~~ 1600 (2100)
.....
T Consensus 202 ~~~~~ 206 (211)
T 3ltm_A 202 KSFNH 206 (211)
T ss_dssp -----
T ss_pred CCCCC
Confidence 87653
No 61
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.17 E-value=7.8e-08 Score=127.87 Aligned_cols=496 Identities=14% Similarity=0.080 Sum_probs=297.6
Q ss_pred CCchHHHHHHHhcCCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCccc
Q 000133 53 SQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVG 132 (2100)
Q Consensus 53 ~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~ 132 (2100)
..+.+..++++.+.+-+.|.-+--++..++++++.-.. -.+..+.+-|.++|+..|..|+++|.++.. ..
T Consensus 73 s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~----L~iN~l~kDl~~~n~~ir~lALr~L~~i~~----~e-- 142 (621)
T 2vgl_A 73 DFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIR----LINNAIKNDLASRNPTFMGLALHCIANVGS----RE-- 142 (621)
T ss_dssp CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHH----HHHHHHHHHHHSCCHHHHHHHHHHHHHHCC----HH--
T ss_pred chhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHH----HHHHHHHHhcCCCCHHHHHHHHHHhhccCC----HH--
Confidence 34567888899999999998888888888865442221 136677888899999999999999998875 22
Q ss_pred ccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHH
Q 000133 133 SKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACM 212 (2100)
Q Consensus 133 ~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L 212 (2100)
.-..++|.+...|.+ ...++.|+..|+.++..+....++. +...+.++.+.++|.+.|+.++.+|..+|..+
T Consensus 143 ----~~~~l~~~v~~~l~~-~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i 214 (621)
T 2vgl_A 143 ----MAEAFAGEIPKILVA-GDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLNDQHLGVVTAATSLITTL 214 (621)
T ss_dssp ----HHHHHTTHHHHHHHC-SSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhCCCCccHHHHHHHHHHHH
Confidence 223567777787743 2356789999999999887544332 22248899999999999999999999999888
Q ss_pred hhcCcchhhHHhhhchHHHHHHHhcCC-C-----------CHHHHHHHHHHHHHhhcC-ChHhHHHHHhCCChHHHHHhh
Q 000133 213 MEEDVSVCSRVLAADATKQLLKLLGSG-N-----------EASVRAEAAGALKSLSDH-CKDARREIAGSNGIPAMINAT 279 (2100)
Q Consensus 213 ~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~-----------~~~v~~~Aa~aL~~Ls~~-~~~~~~~i~~~g~i~~Lv~ll 279 (2100)
+..++.....+ -...+..|-+++..+ . ++-.+......|..++.. +++.+..+.+ .++.++..+
T Consensus 215 ~~~~~~~~~~~-~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~ 291 (621)
T 2vgl_A 215 AQKNPEEFKTS-VSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKA 291 (621)
T ss_dssp HHHCHHHHTTH-HHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHH
T ss_pred HHhChHHHHHH-HHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhh
Confidence 86654321111 112233333444321 1 356777777777777642 2333333222 122222221
Q ss_pred cCCCc-chhhhhh-hHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCch
Q 000133 280 IAPSK-EFMQGEY-AQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPL 357 (2100)
Q Consensus 280 ~~~~~-e~~~~~~-~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~ 357 (2100)
....+ ...++.. ...+..
T Consensus 292 ~~~~ks~~l~~~n~~~aVl~------------------------------------------------------------ 311 (621)
T 2vgl_A 292 QEPPKSKKVQHSNAKNAVLF------------------------------------------------------------ 311 (621)
T ss_dssp HSCCSCSSHHHHHHHHHHHH------------------------------------------------------------
T ss_pred ccCcccccccccchHHHHHH------------------------------------------------------------
Confidence 11000 0000000 012222
Q ss_pred hhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHH
Q 000133 358 IVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRA 437 (2100)
Q Consensus 358 ~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~ 437 (2100)
.++.++..+..+++... .++..|..++.+.++.+|..++..|..++...+. ...
T Consensus 312 --------------------ea~~~i~~l~~~~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~~ 365 (621)
T 2vgl_A 312 --------------------EAISLIIHHDSEPNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HEA 365 (621)
T ss_dssp --------------------HHHHHHHHHCCCHHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HHH
T ss_pred --------------------HHHHHHHhcCCcHHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HHH
Confidence 22233332221111111 2355567777778899999999999999876542 123
Q ss_pred HHhCCcHHHHHHhhC-CCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcC-C
Q 000133 438 LQGREGIQLLISLLG-LSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNH-S 515 (2100)
Q Consensus 438 i~~~g~i~~Lv~lL~-s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~-~ 515 (2100)
+. .-...++..++ +++..++..+...|..++. +.+...+ +..|...+.+.+.+.+..++.+++.++.. .
T Consensus 366 ~~--~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~--~~Nv~~I-----v~eL~~yl~~~d~~~~~~~v~~I~~la~k~~ 436 (621)
T 2vgl_A 366 VK--THIETVINALKTERDVSVRQRAVDLLYAMCD--RSNAQQI-----VAEMLSYLETADYSIREEIVLKVAILAEKYA 436 (621)
T ss_dssp HH--TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC--HHHHHHH-----HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
T ss_pred HH--HHHHHHHHHhccCCCHhHHHHHHHHHHHHcC--hhhHHHH-----HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 32 34677778888 8899999999999999983 5554444 45677777778889999999988888752 1
Q ss_pred hhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchh
Q 000133 516 EDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSD 595 (2100)
Q Consensus 516 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~ 595 (2100)
+...+ .+..|++++......+...+...+..+... .++.+.+
T Consensus 437 ~~~~~------~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~----------------~~~~~~~---------------- 478 (621)
T 2vgl_A 437 VDYTW------YVDTILNLIRIAGDYVSEEVWYRVIQIVIN----------------RDDVQGY---------------- 478 (621)
T ss_dssp SSTHH------HHHHHHHHHHHHGGGSCSHHHHHHHHHHGG----------------GCSCHHH----------------
T ss_pred CcHHH------HHHHHHHHHHhhcccchHHHHHHHHHHHhC----------------ChhHHHH----------------
Confidence 22222 356777777654333333333333333221 1222222
Q ss_pred HHHHhhhccchHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHH
Q 000133 596 ILREGSAANDAVETMIKILSST--KEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAA 673 (2100)
Q Consensus 596 ~~~~~i~~~~~i~~Lv~lL~s~--~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~ 673 (2100)
++..|.+.+.++ ...+-+.++|.++..+..-++.. ...-...+..+..-+...+..++.....++..
T Consensus 479 ----------~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~-~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~K 547 (621)
T 2vgl_A 479 ----------AAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDP-RSSPLIQFNLLHSKFHLCSVPTRALLLSTYIK 547 (621)
T ss_dssp ----------HHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSST-TSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 244555656543 34566788899998764211100 00000124455555677888999999999999
Q ss_pred HhcCCchhHHHHHHhCCChHHHH-HHhC--CCCHHHHHHHHHHHHHHhcC
Q 000133 674 IFLSVRENREVAAVARDALSPLV-VLAG--SPVLEVAEQATCALANLILD 720 (2100)
Q Consensus 674 L~~~~~~~~~~~~~~~~~l~~Lv-~ll~--~~~~evr~~aa~aL~~L~~~ 720 (2100)
++...++.... +..++ .... +.++|+|.+|..-+.-+..+
T Consensus 548 l~~~~p~~~~~-------i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~~~ 590 (621)
T 2vgl_A 548 FVNLFPEVKAT-------IQDVLRSDSQLKNADVELQQRAVEYLRLSTVA 590 (621)
T ss_dssp HHHHCGGGHHH-------HHHHHSSHHHHSCSSHHHHHHHHHHHHHHHSS
T ss_pred HHHHChHHHHH-------HHHHHHHHhcCCCCCHHHHHHHHHHHHHHccC
Confidence 97655432211 22222 2233 88999999998776554443
No 62
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.17 E-value=5.4e-10 Score=126.97 Aligned_cols=184 Identities=21% Similarity=0.150 Sum_probs=160.9
Q ss_pred CcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccc
Q 000133 526 DAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAAND 605 (2100)
Q Consensus 526 g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~ 605 (2100)
+..+.++++|+++++.++..|+.+|+.+. ++..++.|+.++.++++.+|..+..+|+.+. ...
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~---~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~--------------~~~ 76 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIG---DERAVEPLIKALKDEDAWVRRAAADALGQIG--------------DER 76 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHC---CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------------CGG
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------------CHH
Confidence 46789999999999999999999999884 3578999999999999999999999998542 335
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 000133 606 AVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVA 685 (2100)
Q Consensus 606 ~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~ 685 (2100)
+++.|+.+|.++++.+|..|+++|+++... ..++.|+.++.++++.++..++.+|+.+..
T Consensus 77 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------- 136 (201)
T 3ltj_A 77 AVEPLIKALKDEDGWVRQSAAVALGQIGDE-----------RAVEPLIKALKDEDWFVRIAAAFALGEIGD--------- 136 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---------
Confidence 699999999999999999999999998642 478999999999999999999999999832
Q ss_pred HHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHH
Q 000133 686 AVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLL 759 (2100)
Q Consensus 686 ~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~ 759 (2100)
...++.|..++.++++.+|..|+.+|+.+.. ..+++.|..++++++..+|..|.++|.++-
T Consensus 137 ---~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 ---ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999998832 357889999999999999999999998754
No 63
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.15 E-value=2.8e-09 Score=137.97 Aligned_cols=406 Identities=11% Similarity=0.046 Sum_probs=258.2
Q ss_pred HHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCC-CHHHHHHHHHHHHHhhcCChHhHHHHH
Q 000133 189 ILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGN-EASVRAEAAGALKSLSDHCKDARREIA 267 (2100)
Q Consensus 189 ~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~v~~~Aa~aL~~Ls~~~~~~~~~i~ 267 (2100)
.++.-+.+++.++|..|-..|..+...+ ..+....|+.++.+.+ +..+|..|+..|.++..........-
T Consensus 5 ~~L~~~~s~d~~~r~~Ae~~L~~~~~~~--------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~- 75 (462)
T 1ibr_B 5 TILEKTVSPDRLELEAAQKFLERAAVEN--------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQ- 75 (462)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHH-
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhC--------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHH-
Confidence 4455556789999999999886543210 2355778888887753 57899999999999876432211100
Q ss_pred hCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccc
Q 000133 268 GSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSK 347 (2100)
Q Consensus 268 ~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~ 347 (2100)
.......+. ...++.
T Consensus 76 ----~~~~~~~l~------------~~~~~~------------------------------------------------- 90 (462)
T 1ibr_B 76 ----YQQRWLAID------------ANARRE------------------------------------------------- 90 (462)
T ss_dssp ----HHHHHHTSC------------HHHHHH-------------------------------------------------
T ss_pred ----HHhhhhcCC------------HHHHHH-------------------------------------------------
Confidence 000001110 011111
Q ss_pred cCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCC--CccchhhhccccHHHHHHhhcCC--CHHHHHHHHHH
Q 000133 348 AESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGN--PLLSIKLENSEAKRLLVGLITMA--TNEVQEELVRA 423 (2100)
Q Consensus 348 ~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~--~~~~~~l~~~g~i~~Lv~lL~~~--~~~v~~~A~~a 423 (2100)
+...++..+...++. + ..++.+++.++.. |. . .-.+.++.|+..+.++ ++.++..++.+
T Consensus 91 -----------ik~~ll~~l~~~~~~-v-~~~~~~i~~ia~~~~~~-~---~w~~ll~~L~~~l~~~~~~~~~r~~al~~ 153 (462)
T 1ibr_B 91 -----------VKNYVLQTLGTETYR-P-SSASQCVAGIACAEIPV-N---QWPELIPQLVANVTNPNSTEHMKESTLEA 153 (462)
T ss_dssp -----------HHHHHHHHTTCCCSS-S-CSHHHHHHHHHHHHGGG-T---CCTTHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred -----------HHHHHHHHhCCCCch-h-hHHHHHHHHHHHHhccc-c---ccHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 111122222222221 2 3455556555322 21 0 1246788899999888 89999999999
Q ss_pred HHHhhccC-ccchHHHHhCCcHHHHHHhhCCC--CHHHHHHHHHHHHHhccCCcccHH-HHHhcCChHHHHHhccCCCHH
Q 000133 424 LLKLCNNE-GSLWRALQGREGIQLLISLLGLS--SEQQQECSVALLCLLSNENDDSKW-AITAAGGIPPLVQILESGSAK 499 (2100)
Q Consensus 424 L~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~s~--~~~v~~~A~~aL~nLs~~~~~~~~-~i~~~g~i~~Lv~lL~~~~~~ 499 (2100)
|..++... +....... ...++.++..++++ ++.+|..|+.+++++.....+... .....-.++.|.+++.+.+++
T Consensus 154 l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 232 (462)
T 1ibr_B 154 IGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTR 232 (462)
T ss_dssp HHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHH
Confidence 99999753 21111111 13578888999887 799999999999987632221100 001111366677778888999
Q ss_pred HHHHHHHHHHHHhcCChhh-HHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCC-------------------C-
Q 000133 500 AKEDSASILRNLCNHSEDI-RACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKS-------------------D- 558 (2100)
Q Consensus 500 vre~A~~aL~~L~~~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~-------------------~- 558 (2100)
+|..++++|..++...++. +..+ ..+.++.++..+++.++.++..+...+..++... .
T Consensus 233 vr~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (462)
T 1ibr_B 233 VRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTS 311 (462)
T ss_dssp HHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchh
Confidence 9999999999998643321 1111 1167788888888889999999999888887531 0
Q ss_pred --------CCcHHHHHHHhhc-------CCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHH
Q 000133 559 --------TATISQLTALLTS-------DLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQA 623 (2100)
Q Consensus 559 --------~~~i~~L~~lL~~-------~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~ 623 (2100)
+..+|.++..+.+ +++.+|..+..+|+.++...+. ... ...++.+...+.+.+..+|+
T Consensus 312 ~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~-~~~------~~~~~~l~~~l~~~~~~~r~ 384 (462)
T 1ibr_B 312 KFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIV------PHVLPFIKEHIKNPDWRYRD 384 (462)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT-THH------HHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH-HHH------HHHHHHHHHHhcCCChHHHH
Confidence 1234445555543 3457899999999998876552 211 12377888888999999999
Q ss_pred HHHHHHHHHhcCCh-hhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHh
Q 000133 624 KSASALAGIFETRK-DLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLA 699 (2100)
Q Consensus 624 ~Aa~aL~~L~~~~~-~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll 699 (2100)
.|+.+|+.++.+.. +... .....++|.++..+.++++.++..|+.+|++++...... +.....++++++.+
T Consensus 385 aal~~l~~l~~~~~~~~~~-~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~----~~~~~~l~~ll~~L 456 (462)
T 1ibr_B 385 AAVMAFGCILEGPEPSQLK-PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA----AINDVYLAPLLQCL 456 (462)
T ss_dssp HHHHHHHHTSSSSCTTTTC-TTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGG----CCSTTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccc----cccHHHHHHHHHHH
Confidence 99999999998643 1111 122568999999999999999999999999997643210 11234566666543
No 64
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}
Probab=98.99 E-value=1.5e-10 Score=117.52 Aligned_cols=112 Identities=20% Similarity=0.316 Sum_probs=92.4
Q ss_pred CceeeeeccchhhhhhCCCcceEEEecCCCCCccccccc-cCCCccccccceeccccCCCCC-eEEEEeecCCccCCccc
Q 000133 1980 TLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVS-TGPNPEWEESFAWSFEIPPKGQ-KLHISCKNKSKMGKSSF 2057 (2100)
Q Consensus 1980 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 2057 (2100)
.|+|+|.+..++. |....+.++++ .+-+++|||+. .+.||+|||.|+|.+..|+..+ .|+|.|||.++||++.+
T Consensus 22 sL~V~l~~a~~Lp---g~~Dp~akv~F-Rg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~nrl 97 (144)
T 3l9b_A 22 ALIVHLKTVSELR---GRADRIAKVTF-RGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNKL 97 (144)
T ss_dssp EEEEEEEEEESCC---SCEEEEEEEEE-TTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSCCEE
T ss_pred EEEEEEEEecCCC---CCCCCeEEEEE-eccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccCCCE
Confidence 4899999999999 56667778888 79999999998 5999999999999999866554 99999999999998888
Q ss_pred -ceEEEEEeeEEeecccccceeecCCCCCCCCcceEEEE
Q 000133 2058 -GKVTIQIDRVVMLGAVAGEYTLLPESKSGPSRNLEIEF 2095 (2100)
Q Consensus 2058 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2095 (2100)
|.++|.+.+|+.+|...-.-+|..++.+-..-++++++
T Consensus 98 IG~~~i~Lq~lv~~~~l~l~~~LvD~n~~~~~a~I~l~l 136 (144)
T 3l9b_A 98 IGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSMEV 136 (144)
T ss_dssp EEEEEEESHHHHHHSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred EEEEEEEhHHhccCCeEEEeecccCCCCCccccEEEEEE
Confidence 99999999999999998887884444332223344444
No 65
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1
Probab=98.98 E-value=3.5e-10 Score=117.78 Aligned_cols=103 Identities=16% Similarity=0.366 Sum_probs=90.0
Q ss_pred CCCceeeeeccchhhh-----hhCCCcceEEEecCC--CCCccccccccCCCccccccceeccccCCCCCeEEEEeecCC
Q 000133 1978 PGTLVVIIKRGNNMKQ-----SVGNPSVYCKLTLGN--TPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKS 2050 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~-----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2050 (2100)
+|.|.|+|.+..++.. ..|.+.-|+.+.+++ ...++|+|++++.||+|+|.|.|.+. .+..+.|+|+|+|++
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~-~~~~~~l~i~V~d~d 80 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILD-PNQENVLEITLMDAN 80 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEEC-TTSCCEEEEEEEECC
T ss_pred CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEec-CCCCCEEEEEEEECC
Confidence 5889999999999974 457788999999986 36778999999999999999999986 456889999999999
Q ss_pred ccCCcccceEEEEEeeEEeecccccceeecC
Q 000133 2051 KMGKSSFGKVTIQIDRVVMLGAVAGEYTLLP 2081 (2100)
Q Consensus 2051 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2081 (2100)
.++.+.+|++.|++..+.........|.|.+
T Consensus 81 ~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~ 111 (126)
T 1rlw_A 81 YVMDETLGTATFTVSSMKVGEKKEVPFIFNQ 111 (126)
T ss_dssp SSCCEEEEEEEEEGGGSCTTCEEEEEEEETT
T ss_pred CCCCceeEEEEEEHHHccCCCcEEEEEEcCC
Confidence 9998888999999999876666778888854
No 66
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.96 E-value=1.7e-07 Score=124.57 Aligned_cols=470 Identities=13% Similarity=0.068 Sum_probs=308.8
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHH
Q 000133 401 AKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAI 480 (2100)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i 480 (2100)
+....+.++.+++...++.+.-++..++..+++.. + -.+..+.+=+.++++-++..|..+|+++. .++...
T Consensus 75 ~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~--~---L~iN~l~kDl~~~n~~ir~lALr~L~~i~--~~e~~~-- 145 (621)
T 2vgl_A 75 GHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELI--R---LINNAIKNDLASRNPTFMGLALHCIANVG--SREMAE-- 145 (621)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHH--H---HHHHHHHHHHHSCCHHHHHHHHHHHHHHC--CHHHHH--
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHH--H---HHHHHHHHhcCCCCHHHHHHHHHHhhccC--CHHHHH--
Confidence 45667889999999999999999999887755421 1 24566777778999999999999999996 344322
Q ss_pred HhcCChHHHHHhc--cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC
Q 000133 481 TAAGGIPPLVQIL--ESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD 558 (2100)
Q Consensus 481 ~~~g~i~~Lv~lL--~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~ 558 (2100)
..++.+.+++ .+.++.+|..|+.++.++...+++.- ...+.++.|.++|.+.++.++..|..+|..++.+..
T Consensus 146 ---~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~ 219 (621)
T 2vgl_A 146 ---AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV---PMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNP 219 (621)
T ss_dssp ---HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC---CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCH
T ss_pred ---HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc---CchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhCh
Confidence 3578899999 88999999999999999998665432 124789999999999999999999999999987542
Q ss_pred C---CcHHHHHHHhh----cC-------------CcchHHHHHHHHHHHHhccCc--hhHHHHhhhccchHHHHHHHh--
Q 000133 559 T---ATISQLTALLT----SD-------------LPESKVYVLDALKSMLSVVSF--SDILREGSAANDAVETMIKIL-- 614 (2100)
Q Consensus 559 ~---~~i~~L~~lL~----~~-------------~~~~~~~a~~aL~~l~~~~~~--~~~~~~~i~~~~~i~~Lv~lL-- 614 (2100)
. ..+|.++..|. .+ ++-.+...++.|+ ..... ++ ....+. +.++.++..+
T Consensus 220 ~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~---~~~~~~d~~-~~~~l~--~~L~~il~~~~~ 293 (621)
T 2vgl_A 220 EEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQ---CYPPPEDPA-VRGRLT--ECLETILNKAQE 293 (621)
T ss_dssp HHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGG---GSSSCSSHH-HHHHHH--HHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHH---HhCCCCCHH-HHHHHH--HHHHHHHHhhcc
Confidence 2 24555554432 22 2224444444444 33332 22 122210 1123333222
Q ss_pred -------cCCC--HHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 000133 615 -------SSTK--EETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVA 685 (2100)
Q Consensus 615 -------~s~~--~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~ 685 (2100)
.+.+ ..+...|+.++..+... ++... .++..|.+++.+++++++..++.++..++...++. .
T Consensus 294 ~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~-~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~--~- 364 (621)
T 2vgl_A 294 PPKSKKVQHSNAKNAVLFEAISLIIHHDSE-PNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEFSH--E- 364 (621)
T ss_dssp CCSCSSHHHHHHHHHHHHHHHHHHHHHCCC-HHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH--H-
T ss_pred CcccccccccchHHHHHHHHHHHHHhcCCc-HHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH--H-
Confidence 1123 37888899999998743 33322 46778999998889999999999999997654321 1
Q ss_pred HHhCCChHHHHHHhC-CCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCcc
Q 000133 686 AVARDALSPLVVLAG-SPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKI 764 (2100)
Q Consensus 686 ~~~~~~l~~Lv~ll~-~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~~ 764 (2100)
++ ......++..++ +++..+|..+...|..++.... . ..++..|...+...+.+.+..+..++..+....+.
T Consensus 365 ~~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~N-v-----~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~ 437 (621)
T 2vgl_A 365 AV-KTHIETVINALKTERDVSVRQRAVDLLYAMCDRSN-A-----QQIVAEMLSYLETADYSIREEIVLKVAILAEKYAV 437 (621)
T ss_dssp HH-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHH-H-----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCS
T ss_pred HH-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhh-H-----HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Confidence 12 356788888888 9999999999999998874322 2 35777888888888888999999999988753332
Q ss_pred chhHhhhhhccCcHHHHHHhhhhcccccchHhHHHHHHHHHHcCCCCCCCCcccceeeccCCCchhhhhhhccCC--hhH
Q 000133 765 DYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADAT--PLL 842 (2100)
Q Consensus 765 ~~~~~~~~~~~g~l~~li~~l~s~~~~v~~~~al~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~--~~~ 842 (2100)
. ....+..+++++....+.+. .+++..+..+....+.. -...+..|...+.+.. ..+
T Consensus 438 ~--------~~~~v~~Ll~ll~~~~~~v~-~ev~~~l~~ii~~~~~~------------~~~~~~~l~~~l~~~~~~~~l 496 (621)
T 2vgl_A 438 D--------YTWYVDTILNLIRIAGDYVS-EEVWYRVIQIVINRDDV------------QGYAAKTVFEALQAPACHENL 496 (621)
T ss_dssp S--------THHHHHHHHHHHHHHGGGSC-SHHHHHHHHHHGGGCSC------------HHHHHHHHHHHHTSSSCCHHH
T ss_pred c--------HHHHHHHHHHHHHhhcccch-HHHHHHHHHHHhCChhH------------HHHHHHHHHHHHcCccchHHH
Confidence 1 13455667777777666666 77777777776544331 1123444555665543 355
Q ss_pred HHHHHHHHHHHhcCCcccchhcccccccc-hHHHHHHH---hhcCCcceecchhhHHHHHhhhchhhHHhhhhccccchh
Q 000133 843 QDKAIEILSRLCRDQPAVLGDEVTGASGC-ISSIARRV---ISCTNPKVKIGGAALLICAAKVNHQRIVEDLNHSNSCAP 918 (2100)
Q Consensus 843 ~~~a~~~L~~L~~~~~~~~g~~~~~~~~~-~~~~~~~~---l~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 918 (2100)
-..+..+++.+ |+.+....++ +...++.+ ...+++.+|...--+++++..- ++ .
T Consensus 497 i~~~~wilGEy--------~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~--~p------------~ 554 (621)
T 2vgl_A 497 VKVGGYILGEF--------GNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNL--FP------------E 554 (621)
T ss_dssp HHHHHHHHHHH--------THHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH--CG------------G
T ss_pred HHHHHHHhcch--------HHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH--Ch------------H
Confidence 56677899888 5556554433 22223322 2456788888777776666532 11 1
Q ss_pred hHHHHHHHHhhhcC--CCCcCCCCChhHHHHHhhhhc
Q 000133 919 LIQSLVTMLSVVEA--SPLRNQGNDDKEAISIYRYTS 953 (2100)
Q Consensus 919 ~v~~Lv~~l~~~~~--~~~~~~~~~~~~~~~~l~~l~ 953 (2100)
....+...|+.... + .+.+.+-.|....+.|.
T Consensus 555 ~~~~i~~~l~~~~~~~~---~d~evrdRA~~y~~Ll~ 588 (621)
T 2vgl_A 555 VKATIQDVLRSDSQLKN---ADVELQQRAVEYLRLST 588 (621)
T ss_dssp GHHHHHHHHSSHHHHSC---SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHHHc
Confidence 12334444443332 2 34555666666666653
No 67
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=1e-09 Score=116.63 Aligned_cols=122 Identities=20% Similarity=0.359 Sum_probs=97.2
Q ss_pred cCCCceeeeeccchhhhhh-CCCcceEEEecCCCCCccccccccCCCccccccceeccccCC--CCCeEEEEeecCCccC
Q 000133 1977 LPGTLVVIIKRGNNMKQSV-GNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPP--KGQKLHISCKNKSKMG 2053 (2100)
Q Consensus 1977 i~~~~~~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 2053 (2100)
.+|.|.|+|.+..++...- |...-|+.+.+++ ..++|+|++++.||+|+|.|.|.+..++ ..+.|+|+|+|++.||
T Consensus 5 ~~g~L~v~v~~a~~L~~~~~g~~dpyv~v~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~~ 83 (140)
T 2dmh_A 5 SSGMLRVIVESASNIPKTKFGKPDPIVSVIFKD-EKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIG 83 (140)
T ss_dssp BCCEEEEEEEEEESCCCCSSSCCCEEEEEECSS-CEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCSS
T ss_pred CCcEEEEEEEEeeCCCCCCCCCCCeEEEEEECC-EeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCCC
Confidence 3799999999999987532 6678899999985 5699999999999999999999998654 4679999999999998
Q ss_pred Cc-ccceEEEEEeeEEeeccccccee---ecCCCCCCCCcceEEEEEecC
Q 000133 2054 KS-SFGKVTIQIDRVVMLGAVAGEYT---LLPESKSGPSRNLEIEFLWSN 2099 (2100)
Q Consensus 2054 ~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 2099 (2100)
++ .+|++.|.+..+...+.....|. |....++...=++.+++.|.+
T Consensus 84 ~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p 133 (140)
T 2dmh_A 84 QNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDP 133 (140)
T ss_dssp SCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECC
T ss_pred CCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEEEEEC
Confidence 77 56999999999877777777787 533332211224668888865
No 68
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}
Probab=98.91 E-value=2.7e-10 Score=121.59 Aligned_cols=114 Identities=17% Similarity=0.243 Sum_probs=94.0
Q ss_pred hcCCCceeeeeccchhhhhh------------CCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEE
Q 000133 1976 CLPGTLVVIIKRGNNMKQSV------------GNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLH 2043 (2100)
Q Consensus 1976 ~i~~~~~~~~~r~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2043 (2100)
...|.|.|+|.+..++...= |.+.-++.+++|+....+||+++++.||+|||.|++.+. .++.|.
T Consensus 26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~---~~~~L~ 102 (157)
T 2fk9_A 26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVT---DGGHLE 102 (157)
T ss_dssp CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEE---EECEEE
T ss_pred cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcC---CCCEEE
Confidence 56799999999999986321 446789999998766668999999999999999998864 367999
Q ss_pred EEeecCCccCCc-ccceEEEEEeeEEee----cccccceeecCCCCCCCCcceEEEEEec
Q 000133 2044 ISCKNKSKMGKS-SFGKVTIQIDRVVML----GAVAGEYTLLPESKSGPSRNLEIEFLWS 2098 (2100)
Q Consensus 2044 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2098 (2100)
|+|+++..||++ .+|+++|++.++... +.+.+-|.|.+ .|+.+ +++.|+
T Consensus 103 ~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~---~G~i~---l~l~~~ 156 (157)
T 2fk9_A 103 LAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP---EGKVF---VVITLT 156 (157)
T ss_dssp EEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS---SCEEE---EEEEEC
T ss_pred EEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC---CcEEE---EEEEEE
Confidence 999999999965 669999999998865 67888899965 55544 777775
No 69
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.77 E-value=1.6e-06 Score=115.46 Aligned_cols=339 Identities=14% Similarity=0.085 Sum_probs=229.8
Q ss_pred hhcCCCCChHHHHHHHHHHHHH-hCCCccchhhhccccHHHHHHhhc---CCCHHHHHHHHHHHHHhhccCccchHHHHh
Q 000133 365 NQFKPRLPFLVQERTIEALASL-YGNPLLSIKLENSEAKRLLVGLIT---MATNEVQEELVRALLKLCNNEGSLWRALQG 440 (2100)
Q Consensus 365 ~lL~~~~~~~vq~~aa~aL~~L-~~~~~~~~~l~~~g~i~~Lv~lL~---~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~ 440 (2100)
.++...++. .+..|+-+|+-+ ..+.+ +++..|-..+. +.++.++..|+.+|+-+..+...
T Consensus 365 ~Wl~k~~~~-~k~sA~aSLGlIh~g~~~--------~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~------- 428 (963)
T 4ady_A 365 PWLGKAQNW-AKFTATASLGVIHKGNLL--------EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR------- 428 (963)
T ss_dssp HHHHHCCTH-HHHHHHHHHHHHTSSCTT--------THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH-------
T ss_pred hhhhccchH-HHHHHHHHhhhhccCchH--------HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH-------
Confidence 344433333 255666666655 22221 34555555665 56789999999999998887532
Q ss_pred CCcHHHHHHhhCCCC--------HHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHh
Q 000133 441 REGIQLLISLLGLSS--------EQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLC 512 (2100)
Q Consensus 441 ~g~i~~Lv~lL~s~~--------~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~ 512 (2100)
.++..|...+.+++ +.++..|+..|+....+... ..+++.|...+.+.+..+++.|+.+|+.+-
T Consensus 429 -~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-------eev~e~L~~~L~dd~~~~~~~AalALGli~ 500 (963)
T 4ady_A 429 -DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-------IEVYEALKEVLYNDSATSGEAAALGMGLCM 500 (963)
T ss_dssp -HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhh
Confidence 25677777777554 66888888888887543221 125677888888888888889999999874
Q ss_pred cCChhhHHHHHhCCcHHHHHHHhh-cCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhh-cCCcchHHHHHHHHHHHHhc
Q 000133 513 NHSEDIRACVESADAVPALLWLLK-NGSANGKEIAAKTLNHLIHKSDTATISQLTALLT-SDLPESKVYVLDALKSMLSV 590 (2100)
Q Consensus 513 ~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~-~~~~~~~~~a~~aL~~l~~~ 590 (2100)
..+... .++..|++.+. +.+..+++.++.+|+.+.. +.+..++.++..|. +.++-+|..+.-+++ +++.
T Consensus 501 vGTgn~-------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~-g~~e~~~~li~~L~~~~dp~vRygaa~alg-lAya 571 (963)
T 4ady_A 501 LGTGKP-------EAIHDMFTYSQETQHGNITRGLAVGLALINY-GRQELADDLITKMLASDESLLRYGGAFTIA-LAYA 571 (963)
T ss_dssp TTCCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT-TCGGGGHHHHHHHHHCSCHHHHHHHHHHHH-HHTT
T ss_pred cccCCH-------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhC-CChHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHhc
Confidence 432211 14566666554 4577899999999998855 44578889988876 466778888887777 3333
Q ss_pred cCchhHHHHhhhccchHHHHHHH-hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhh-cCCCHHHHHHHH
Q 000133 591 VSFSDILREGSAANDAVETMIKI-LSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLL-DVGSECILVEAS 668 (2100)
Q Consensus 591 ~~~~~~~~~~i~~~~~i~~Lv~l-L~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL-~~~~~~v~~~aa 668 (2100)
.+ .+..+|+.|+.. ..+.++.+|+.|+.+|+.+..+.+ ..++.++..+ .+.++.++..++
T Consensus 572 GT---------Gn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAa 633 (963)
T 4ady_A 572 GT---------GNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTA 633 (963)
T ss_dssp TS---------CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHH
T ss_pred CC---------CCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHH
Confidence 32 122347766664 467789999999999999987754 3467777654 678899999999
Q ss_pred HHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHcc--CChh
Q 000133 669 RCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCE--GTIS 746 (2100)
Q Consensus 669 ~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~--~~~~ 746 (2100)
.+++.++.+++. ..++..|..++.+++..||..|+.+|+.+..+.......--......|.....+ .+..
T Consensus 634 lALGli~aGn~~--------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~ 705 (963)
T 4ady_A 634 FALGIACAGKGL--------QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGL 705 (963)
T ss_dssp HHHHHHTSSSCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHH
T ss_pred HHHHHhccCCCc--------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHH
Confidence 999999887641 135788999999999999999999999998553322100002334445555543 3444
Q ss_pred HHHHHHHHHHHHHhcC
Q 000133 747 GKTLAAAAIARLLHSR 762 (2100)
Q Consensus 747 ~~~~Aa~aL~~l~~~~ 762 (2100)
.+..+.-|+.-+-.+.
T Consensus 706 ~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 706 AKFGACVAQGIMNAGG 721 (963)
T ss_dssp HHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHhcCC
Confidence 6777766665554333
No 70
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A
Probab=98.74 E-value=1.2e-08 Score=110.12 Aligned_cols=120 Identities=18% Similarity=0.370 Sum_probs=90.7
Q ss_pred cCCCceeeeeccchhhhh--hCCCcceEEEecCCC-----CCccccccccCCCccccccceeccccCCCCCeEEEEeecC
Q 000133 1977 LPGTLVVIIKRGNNMKQS--VGNPSVYCKLTLGNT-----PPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNK 2049 (2100)
Q Consensus 1977 i~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 (2100)
-.|.|.|+|++..++... .|.+.-|+.+.+++. ..++|+|++++.||+|+|.|.|.+. +..+.|+|+|+|+
T Consensus 18 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~--~~~~~l~~~V~d~ 95 (153)
T 3b7y_A 18 NSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVH--PQQHRLLFEVFDE 95 (153)
T ss_dssp TCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEEC--TTTCEEEEEEEEC
T ss_pred CccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEec--CCCCEEEEEEEEC
Confidence 358899999999999743 456778998888742 3678999999999999999998765 4468999999999
Q ss_pred CccCCcc-cceEEEEEeeEEeeccc------ccceeecCCCC-CCCCcceEEEEEec
Q 000133 2050 SKMGKSS-FGKVTIQIDRVVMLGAV------AGEYTLLPESK-SGPSRNLEIEFLWS 2098 (2100)
Q Consensus 2050 ~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~~~~~~~~~ 2098 (2100)
+.||++. +|++.|++.++...+.- ...|.|.+.++ +...=.+.|++.|.
T Consensus 96 d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~ 152 (153)
T 3b7y_A 96 NRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYL 152 (153)
T ss_dssp CSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEEC
T ss_pred CCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEe
Confidence 9998765 59999999999876542 47899977632 22223456777764
No 71
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.74 E-value=1.8e-06 Score=116.35 Aligned_cols=199 Identities=15% Similarity=0.117 Sum_probs=152.4
Q ss_pred CchHHHHHHHhcCCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHH-HhhcCCCHHHHHHHHHHHHHHhccCCCCccc
Q 000133 54 QAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLL-GLLKSSSAEGQIAAAKTIYAVSQGGAKDYVG 132 (2100)
Q Consensus 54 g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv-~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~ 132 (2100)
..+.|++..|+++++..|.+|+.+|.+++.++..+..+...|++++++ .+|.+++.++|.+|+++|+||+... .+.-
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~--g~d~ 111 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEE--EADF 111 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS--CHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc--CchH
Confidence 356778899999999999999999999999888888888889988765 5688899999999999999999732 2222
Q ss_pred ccchhccCChHHHHHHhhccC-----------CCcc-------hHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhH
Q 000133 133 SKIFSTEGVVPVLWEQLKNGL-----------KSGN-------VVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLL 194 (2100)
Q Consensus 133 ~~~~~~~g~vp~L~~lL~~~~-----------~~~~-------~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL 194 (2100)
...+...|++|+|..++.... .... .+...++.+|++||...+.....+...++++.|+.+|
T Consensus 112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L 191 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL 191 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence 455788999999999986421 0000 1334567889999977767667788899999999998
Q ss_pred ccC---CHHHHHHHHHHHHHHhhcCcchhhHHhhhch---HHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q 000133 195 TLG---QSSTQAHVCFLLACMMEEDVSVCSRVLAADA---TKQLLKLLGSGNEASVRAEAAGALKSLS 256 (2100)
Q Consensus 195 ~s~---~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~---i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls 256 (2100)
.+. ..+++..|+.+|..++.++......+.+.+. ...++.+... .+ ..+..++++|+|+.
T Consensus 192 ~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~-~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 192 ISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TD-PRAVMACGVLHNVF 257 (684)
T ss_dssp HHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SC-TTHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-Cc-HHHHHHHHHHHhHh
Confidence 653 3579999999999999888777777766553 3344443333 32 36788999999975
No 72
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=98.73 E-value=5.4e-09 Score=109.84 Aligned_cols=114 Identities=25% Similarity=0.423 Sum_probs=88.7
Q ss_pred CCCceeeeeccchhhhh--hCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCc
Q 000133 1978 PGTLVVIIKRGNNMKQS--VGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKS 2055 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2055 (2100)
.|.|.|+|++..++... .|.+.-|+.+.+++ ...+|+|++++.||+|+|.|.|.+.. .++.|.|+|+|++.+|++
T Consensus 12 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~-~~~kT~~~~~t~nP~wne~f~f~~~~--~~~~l~i~V~d~d~~~~~ 88 (133)
T 2ep6_A 12 VGILQVKVLKAADLLAADFSGKSDPFCLLELGN-DRLQTHTVYKNLNPEWNKVFTFPIKD--IHDVLEVTVFDEDGDKPP 88 (133)
T ss_dssp SEEEEEEEEEEESCCCSSSSSCCCEEEEEEETT-EEEECCCCSSCSSCCCCEEEEEEESC--TTCEEEEEEEEEETTEEE
T ss_pred ceEEEEEEEeeECCCCCCCCCCcCeEEEEEECC-EEEEeeeecCCCCCccccEEEEEecC--CCCEEEEEEEECCCCCCC
Confidence 48899999999999743 45677899999976 57899999999999999999988863 368999999999999754
Q ss_pred -ccceEEEEEeeEEeecccccceeecCCCC----CCCCcceEEEEEe
Q 000133 2056 -SFGKVTIQIDRVVMLGAVAGEYTLLPESK----SGPSRNLEIEFLW 2097 (2100)
Q Consensus 2056 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 2097 (2100)
.+|++.|.+..+.. |. ...|.|.+.++ .|..+ |+++|.|
T Consensus 89 ~~lG~~~i~l~~l~~-~~-~~w~~L~~~~~~~~~~G~i~-l~i~~~~ 132 (133)
T 2ep6_A 89 DFLGKVAIPLLSIRD-GQ-PNCYVLKNKDLEQAFKGVIY-LEMDLIY 132 (133)
T ss_dssp EECCBCEEEGGGCCS-SC-CEECCCBCSCTTSCCSSEEE-EEEEEEE
T ss_pred CeeEEEEEEHHHccC-CC-ceEEEeecCCCCCccceEEE-EEEEEEe
Confidence 56999999999743 43 46788865432 23333 5555555
No 73
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A {Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A* 4dnl_A* 2uzp_A*
Probab=98.73 E-value=1.7e-09 Score=114.37 Aligned_cols=113 Identities=23% Similarity=0.442 Sum_probs=92.7
Q ss_pred CCCceeeeeccchhhh--hhCCCcceEEEecC----CCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCc
Q 000133 1978 PGTLVVIIKRGNNMKQ--SVGNPSVYCKLTLG----NTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSK 2051 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2051 (2100)
.|.|+|+|++..++.. ..|.+.-|+.+.+. +...++|+|++++.||+|+|.|.|.+..+..++.|+|+|++++.
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~l~i~v~d~d~ 94 (137)
T 3rdl_A 15 DEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDR 94 (137)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEECCTTCCCCEECCCCCSCSSCEEEEEEEEECCGGGGGCEEEEEEEECCS
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCeeEEEEEEcCCCCCeeecCceEcCCCCCCcccEEEEEcCchhcCCEEEEEEEECCC
Confidence 4889999999999965 56667788888884 45678899999999999999999998755566799999999999
Q ss_pred cCCcc-cceEEEEEeeEEeecccccceeecCCCCCCCCcceE
Q 000133 2052 MGKSS-FGKVTIQIDRVVMLGAVAGEYTLLPESKSGPSRNLE 2092 (2100)
Q Consensus 2052 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2092 (2100)
||++. +|++.|.++++...+ ..+-|.|.+.. +|..+++.
T Consensus 95 ~~~~~~iG~~~i~l~~l~~~~-~~~W~~L~~~~-~g~~~~~~ 134 (137)
T 3rdl_A 95 TTRNDFMGSLSFGVSELMKMP-ASGWYKLLNQE-EGEYYNVP 134 (137)
T ss_dssp SSCCEEEEEEEEEHHHHHHSC-EEEEEECBCHH-HHTTCCCB
T ss_pred CCCCceEEEEEEeHHHhccCc-cCceEECcCcc-ccccccCC
Confidence 98765 599999999997655 88899996543 56666543
No 74
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}
Probab=98.71 E-value=1.1e-08 Score=113.02 Aligned_cols=120 Identities=17% Similarity=0.367 Sum_probs=88.4
Q ss_pred CCCceeeeeccchhhh--hhCCCcceEEEecCCC-----CCccccccccCCCccccccceeccccCCCCCeEEEEeecCC
Q 000133 1978 PGTLVVIIKRGNNMKQ--SVGNPSVYCKLTLGNT-----PPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKS 2050 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2050 (2100)
.|.|.|+|++..++.. ..|.+.-|+.+.+++. ...+|+|++++.||.|+|.|.|.+. +..+.|.|+|++++
T Consensus 7 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~--~~~~~L~~~V~d~d 84 (176)
T 3m7f_B 7 TRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVL--PQRHRILFEVFDEN 84 (176)
T ss_dssp CEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEEC--TTTCEEEEEEEECC
T ss_pred cEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEc--CCCCEEEEEEEECC
Confidence 4889999999999964 3566788999998853 3468999999999999999986654 66789999999999
Q ss_pred ccCCcc-cceEEEEEeeEEeeccc-c-----cceeecCCCCCCC-CcceEEEEEecC
Q 000133 2051 KMGKSS-FGKVTIQIDRVVMLGAV-A-----GEYTLLPESKSGP-SRNLEIEFLWSN 2099 (2100)
Q Consensus 2051 ~~~~~~-~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~-~~~~~~~~~~~~ 2099 (2100)
.||++. +|+|+|++..+...+.. . ..|.|.+.+++++ .=.|.+.+.|.+
T Consensus 85 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p 141 (176)
T 3m7f_B 85 RLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP 141 (176)
T ss_dssp ----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred CCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEe
Confidence 998754 69999999999886544 2 5788976533332 335668887754
No 75
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}
Probab=98.70 E-value=6.6e-09 Score=109.12 Aligned_cols=105 Identities=22% Similarity=0.378 Sum_probs=85.2
Q ss_pred CCCceeeeeccchhhhhhCC-CcceEEEecC----CCCCccccccccCCCccccccceec-cccCC-CCCeEEEEeecCC
Q 000133 1978 PGTLVVIIKRGNNMKQSVGN-PSVYCKLTLG----NTPPRQTKIVSTGPNPEWEESFAWS-FEIPP-KGQKLHISCKNKS 2050 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~ 2050 (2100)
+|.|.|+|.+..++....++ +.-|+++.+. ....++|+|++++.||+|+|.|.|. +.... .+..|.|+|++++
T Consensus 19 ~~~L~V~V~~a~~L~~~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d~d 98 (134)
T 2b3r_A 19 NGTLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAE 98 (134)
T ss_dssp TTEEEEEEEEEECCCCTTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEECC
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEECC
Confidence 68899999999999865444 5678877763 2456799999999999999999987 55322 5679999999999
Q ss_pred ccCCc-ccceEEEEEeeEEeecccccceeecCC
Q 000133 2051 KMGKS-SFGKVTIQIDRVVMLGAVAGEYTLLPE 2082 (2100)
Q Consensus 2051 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2082 (2100)
.||++ .+|+++|+++.+...+...+-|.|.+.
T Consensus 99 ~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~ 131 (134)
T 2b3r_A 99 SLRENFFLGGITLPLKDFNLSKETVKWYQLTAA 131 (134)
T ss_dssp SSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC-
T ss_pred CCCCCcEEEEEEEEhhhccCCCCcceeEECCCc
Confidence 99876 569999999999777777888888665
No 76
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1
Probab=98.70 E-value=3.9e-09 Score=111.34 Aligned_cols=113 Identities=19% Similarity=0.242 Sum_probs=88.9
Q ss_pred cCCCceeeeeccchhhh--hhCC-----------CcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEE
Q 000133 1977 LPGTLVVIIKRGNNMKQ--SVGN-----------PSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLH 2043 (2100)
Q Consensus 1977 i~~~~~~~~~r~~~~~~--~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2043 (2100)
+.|.|.|+|.+..+++. ..|. +.-++.+.+++.+..+|++++++.||+|||.|+|.+..+ +.|+
T Consensus 4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~---~~L~ 80 (136)
T 1gmi_A 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG---RKIE 80 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE---CEEE
T ss_pred cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC---CEEE
Confidence 35889999999999863 2222 668999999776667899999999999999999998643 8999
Q ss_pred EEeecCCccCCc-ccceEEEEEeeEEeec--ccccceeecCCCCCCCCcceEEEEEec
Q 000133 2044 ISCKNKSKMGKS-SFGKVTIQIDRVVMLG--AVAGEYTLLPESKSGPSRNLEIEFLWS 2098 (2100)
Q Consensus 2044 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2098 (2100)
++|++++.||++ .+|++.|++.++...+ .+..-|.|.+ .|..+ +.+.|.
T Consensus 81 ~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~---~G~i~---l~l~~~ 132 (136)
T 1gmi_A 81 LAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP---EGKVY---VIIDLS 132 (136)
T ss_dssp EEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS---SCEEE---EEEEEE
T ss_pred EEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcCC---CeEEE---EEEEEE
Confidence 999999999976 5699999999987643 3466677755 55544 555554
No 77
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=98.67 E-value=2.2e-08 Score=106.38 Aligned_cols=105 Identities=18% Similarity=0.310 Sum_probs=85.8
Q ss_pred CCCceeeeeccchhhhh--hCCCcceEEEecC----CCCCccccccccCCCccccccceeccccC--CCCCeEEEEeecC
Q 000133 1978 PGTLVVIIKRGNNMKQS--VGNPSVYCKLTLG----NTPPRQTKIVSTGPNPEWEESFAWSFEIP--PKGQKLHISCKNK 2049 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 2049 (2100)
.|.|+|+|++..++... .|.+.-|+++.+. ....++|+|++++.||+|+|.|.|..-.+ ...+.|+|+|+++
T Consensus 20 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~ 99 (141)
T 1v27_A 20 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQ 99 (141)
T ss_dssp TTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEB
T ss_pred CCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEEC
Confidence 47899999999999753 4556788888883 45678999999999999999999984312 2457999999999
Q ss_pred CccCC---cccceEEEEEeeEEeecccccceeecCCC
Q 000133 2050 SKMGK---SSFGKVTIQIDRVVMLGAVAGEYTLLPES 2083 (2100)
Q Consensus 2050 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2083 (2100)
+.||+ +.+|+++|++.++...+ ...-|.|.+..
T Consensus 100 d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~~ 135 (141)
T 1v27_A 100 ARVREEESEFLGEILIELETALLDD-EPHWYKLQTHD 135 (141)
T ss_dssp CSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCCS
T ss_pred CCCcCCCCceEEEEEEEccccCCCC-CCceEECcccc
Confidence 99994 67799999999987765 78889997663
No 78
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*
Probab=98.66 E-value=2.8e-08 Score=106.47 Aligned_cols=102 Identities=16% Similarity=0.380 Sum_probs=85.2
Q ss_pred CCCceeeeeccchhhh--hhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCcc---
Q 000133 1978 PGTLVVIIKRGNNMKQ--SVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKM--- 2052 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 2052 (2100)
.|.|.|+|++..++.. ..|.+.-|+.+.+|+ ..++|++++++.||.|+|.|.|.+.. .++.|+|+|++++.+
T Consensus 16 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~--~~~~l~~~v~d~d~~~~~ 92 (148)
T 3kwu_A 16 SAKISITVVCAQGLQAKDKTGSSDPYVTVQVGK-TKKRTKTIYGNLNPVWEENFHFECHN--SSDRIKVRVLDEDDDIKS 92 (148)
T ss_dssp CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETT-EEEECCCCCSCSSCEEEEEEEEEECS--TTCEEEEEEEECCCSHHH
T ss_pred ccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECC-EEEECCccCCCCCCCcccEEEEEecC--CCCEEEEEEEECCCCccc
Confidence 6899999999999965 467788999999965 67899999999999999999887763 358999999999987
Q ss_pred --------CCc-ccceEEEEEeeEEeecccccceeecCCCC
Q 000133 2053 --------GKS-SFGKVTIQIDRVVMLGAVAGEYTLLPESK 2084 (2100)
Q Consensus 2053 --------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2084 (2100)
|++ .+|++.|++..+ .+.....|.|.+.++
T Consensus 93 ~~~~~~~~~~~~~lG~~~i~l~~l--~~~~~~w~~L~~~~~ 131 (148)
T 3kwu_A 93 RVKQRFKRESDDFLGQTIIEVRTL--SGEMDVWYNLDKRTD 131 (148)
T ss_dssp HHHTTTSSCSSEEEEEEEEEGGGC--CSEEEEEEECBCSST
T ss_pred cccccccCCCCccEEEEEEEHHHC--cCCCCEEEEcccCCC
Confidence 555 459999999998 456677899986643
No 79
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.65 E-value=1e-08 Score=109.79 Aligned_cols=107 Identities=17% Similarity=0.294 Sum_probs=85.9
Q ss_pred CCCceeeeeccchhhhh---------hCCCcceEEEecCC--CCCccccccccCCCccccccceeccccCC-CCCeEEEE
Q 000133 1978 PGTLVVIIKRGNNMKQS---------VGNPSVYCKLTLGN--TPPRQTKIVSTGPNPEWEESFAWSFEIPP-KGQKLHIS 2045 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~---------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 2045 (2100)
.|.|.|+|++..++... +|.+.-|+++.+++ ...++|+|++++.||+|+|.|.|.+..+. ....|+|+
T Consensus 25 ~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~ 104 (147)
T 2enp_A 25 HNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLT 104 (147)
T ss_dssp TTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEE
T ss_pred CCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEE
Confidence 57899999999999864 45577888888873 45789999999999999999998764221 34699999
Q ss_pred eecCCccCCc-ccceEEEEEeeEEeecccccceeecCCCC
Q 000133 2046 CKNKSKMGKS-SFGKVTIQIDRVVMLGAVAGEYTLLPESK 2084 (2100)
Q Consensus 2046 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2084 (2100)
|++++.||++ .+|++.|+++.+...+....-|.|.+.++
T Consensus 105 V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~ 144 (147)
T 2enp_A 105 VVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPSGP 144 (147)
T ss_dssp EECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBCCCC
T ss_pred EEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeecCCC
Confidence 9999999876 46999999999876666666778876643
No 80
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0
Probab=98.65 E-value=8.5e-09 Score=111.10 Aligned_cols=114 Identities=19% Similarity=0.351 Sum_probs=90.8
Q ss_pred CCCceeeeeccchhhhhh-CCCcceEEEecC----CCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCcc
Q 000133 1978 PGTLVVIIKRGNNMKQSV-GNPSVYCKLTLG----NTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKM 2052 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2052 (2100)
.|.|+|+|++..++...- |.+.-|+++.+. ....++|+|++++.||+|+|.|.|.+......+.|.|+|++++.|
T Consensus 26 ~~~L~V~v~~a~~L~~~d~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~ 105 (153)
T 3fbk_A 26 DRVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQ 105 (153)
T ss_dssp SSEEEEEEEEEESCCCCSSSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEECCSS
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeCCCC
Confidence 478999999999987543 556678877773 335678999999999999999999986555667899999999999
Q ss_pred CC--cccceEEEEEeeEEe-ecccccceeecCCCCCCCCcceE
Q 000133 2053 GK--SSFGKVTIQIDRVVM-LGAVAGEYTLLPESKSGPSRNLE 2092 (2100)
Q Consensus 2053 ~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 2092 (2100)
|+ +.+|+++|+++.+.. ...+.+-|.|.+.. .|..+++.
T Consensus 106 ~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~-~g~~~~lk 147 (153)
T 3fbk_A 106 SRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEH-LGRTKHLK 147 (153)
T ss_dssp GGGCEEEEEEEEEHHHHTC--CCEEEEEECBCTT-GGGTCCCB
T ss_pred CCCCcEEEEEEEEHHHhcCCCCccccEEECCChh-hcccccce
Confidence 76 567999999999875 68888999997764 45555444
No 81
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2
Probab=98.65 E-value=9.6e-09 Score=108.39 Aligned_cols=117 Identities=19% Similarity=0.400 Sum_probs=91.9
Q ss_pred CCCceeeeeccchhhhh--hCCCcceEEEecCCCCCccccccc-cCCCccccccceeccccCCCCCeEEEEeecCCccCC
Q 000133 1978 PGTLVVIIKRGNNMKQS--VGNPSVYCKLTLGNTPPRQTKIVS-TGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGK 2054 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2054 (2100)
.|.|+|+|.+..++... .|...-|+.+.+++. .++|++++ ++.||+|+|.|.|.+.. ..+.|+|+|+|++.||+
T Consensus 9 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~kT~~~~~~~~nP~Wne~f~f~v~~--~~~~l~~~V~d~~~~~~ 85 (136)
T 1wfj_A 9 HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQ-DQKSNVAEGMGTTPEWNETFIFTVSE--GTTELKAKIFDKDVGTE 85 (136)
T ss_dssp EEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSC-EEECCCCTTCCSSCEEEEEEEEEEES--SCCEEEEEECCSSSCTT
T ss_pred cEEEEEEEEeccCCCCcccCCCcCceEEEEECCc-cceeEeccCCCCCCccCcEEEEEECC--CCCEEEEEEEECCCCCC
Confidence 48899999999998753 466778999999764 67899998 89999999999998873 67899999999999986
Q ss_pred c-ccceEEEEEeeEEeecc-cccceeecCCCCCCCCcceEEEEEecC
Q 000133 2055 S-SFGKVTIQIDRVVMLGA-VAGEYTLLPESKSGPSRNLEIEFLWSN 2099 (2100)
Q Consensus 2055 ~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2099 (2100)
+ .+|+++|++..+...|. ....|.|...++ ..=.+.+.+.|.+
T Consensus 86 d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~--~~G~i~l~l~~~p 130 (136)
T 1wfj_A 86 DDAVGEATIPLEPVFVEGSIPPTAYNVVKDEE--YKGEIWVALSFKP 130 (136)
T ss_dssp TCCSEEEEEESHHHHHHSEEEEEEEEEEETTE--EEEEEEEEEEEEE
T ss_pred CceEEEEEEEHHHhccCCCCCcEEEEeecCCc--cCEEEEEEEEEEe
Confidence 5 55999999999866654 345688863221 1223557777754
No 82
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2
Probab=98.64 E-value=5.2e-09 Score=112.31 Aligned_cols=111 Identities=23% Similarity=0.407 Sum_probs=89.1
Q ss_pred cCCCceeeeeccchhhhh--hCCCcceEEEecCC----CCCccccccccCCCccccccceeccccCCCCCeEEEEeecCC
Q 000133 1977 LPGTLVVIIKRGNNMKQS--VGNPSVYCKLTLGN----TPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKS 2050 (2100)
Q Consensus 1977 i~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2050 (2100)
-+|.|.|+|++..++... .|.+.-|+.+.+++ ...++|+|++++.||+|+|.|.|.+..+...+.|+|+|+|++
T Consensus 29 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d 108 (149)
T 1a25_A 29 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWD 108 (149)
T ss_dssp SSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECC
T ss_pred cCCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECC
Confidence 368899999999999643 56677899888875 567889999999999999999998864445679999999999
Q ss_pred ccCCcc-cceEEEEEeeEEeecccccceeecCCCCCCCCc
Q 000133 2051 KMGKSS-FGKVTIQIDRVVMLGAVAGEYTLLPESKSGPSR 2089 (2100)
Q Consensus 2051 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2089 (2100)
.||++. +|+++|.+.++... ...+-|.|.+. ++|+..
T Consensus 109 ~~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~~-~~g~~~ 146 (149)
T 1a25_A 109 LTSRNDFMGSLSFGISELQKA-GVDGWFKLLSQ-EEGEYF 146 (149)
T ss_dssp SSSCCEEEEEEEEEHHHHTTC-CEEEEEECBCH-HHHTTC
T ss_pred CCCCCCEEEEEEEEHHHhCcC-ccCCeEEccCC-CCCccc
Confidence 998765 59999999987654 46677888554 244443
No 83
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=1.5e-08 Score=107.59 Aligned_cols=105 Identities=21% Similarity=0.331 Sum_probs=86.7
Q ss_pred CCCceeeeeccchhhhh--hCCCcceEEEecC--CCCCccccccccCCCccccccceeccccCC---CCCeEEEEeecCC
Q 000133 1978 PGTLVVIIKRGNNMKQS--VGNPSVYCKLTLG--NTPPRQTKIVSTGPNPEWEESFAWSFEIPP---KGQKLHISCKNKS 2050 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 2050 (2100)
.|.|.|+|++..++... .|.+.-|+++.++ +...++|+|++++.||+|+|.|.|..- |+ ..+.|.|+|++++
T Consensus 25 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~-~~~~~~~~~l~i~V~d~d 103 (141)
T 2d8k_A 25 ESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGF-PYEKVVQRILYLQVLDYD 103 (141)
T ss_dssp SCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSC-CHHHHTTSEEEEEEEECC
T ss_pred CCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECcc-CHHHcccCEEEEEEEECC
Confidence 58899999999999754 4556788888885 345778999999999999999988742 22 4679999999999
Q ss_pred ccCCc-ccceEEEEEeeEEeecccccceeecCCC
Q 000133 2051 KMGKS-SFGKVTIQIDRVVMLGAVAGEYTLLPES 2083 (2100)
Q Consensus 2051 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2083 (2100)
.||++ .+|++.|+++.+...+....-|.|.+.+
T Consensus 104 ~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~ 137 (141)
T 2d8k_A 104 RFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSG 137 (141)
T ss_dssp SSSSCEEEEEEEEETTTSCTTSCEEEEECCEECC
T ss_pred CCCCCcEEEEEEEEhhhhcCCCCccEEEECcCCC
Confidence 99875 4599999999998777778889998773
No 84
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.62 E-value=3.1e-06 Score=112.64 Aligned_cols=294 Identities=15% Similarity=0.051 Sum_probs=213.6
Q ss_pred CCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhC---CCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHH
Q 000133 412 ATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLG---LSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPP 488 (2100)
Q Consensus 412 ~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~---s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~ 488 (2100)
.....+..|+.+|+.+-..+.+ +++..|-..|. +.++.++..|+.+|+.+..+... .++..
T Consensus 370 ~~~~~k~sA~aSLGlIh~g~~~--------~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--------~~~~l 433 (963)
T 4ady_A 370 AQNWAKFTATASLGVIHKGNLL--------EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--------DTTDY 433 (963)
T ss_dssp CCTHHHHHHHHHHHHHTSSCTT--------THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--------HHHHH
T ss_pred cchHHHHHHHHHhhhhccCchH--------HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--------HHHHH
Confidence 3445677788888887776543 57888888887 66788899999999999765432 14667
Q ss_pred HHHhccCCC--------HHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHH-hcCCCC
Q 000133 489 LVQILESGS--------AKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHL-IHKSDT 559 (2100)
Q Consensus 489 Lv~lL~~~~--------~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L-~~~~~~ 559 (2100)
|...|.+.+ +.+|..|+.+|+-....+.. +.+++.|..++.+.+..+.+.|+.+|+.+ ...++.
T Consensus 434 L~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-------eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~ 506 (963)
T 4ady_A 434 LKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-------IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP 506 (963)
T ss_dssp HHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH
T ss_pred HHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH
Confidence 777776554 67888999999987643221 12567888888887777778888899876 555667
Q ss_pred CcHHHHHHHhh-cCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCh
Q 000133 560 ATISQLTALLT-SDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILS-STKEETQAKSASALAGIFETRK 637 (2100)
Q Consensus 560 ~~i~~L~~lL~-~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~-s~~~~~~~~Aa~aL~~L~~~~~ 637 (2100)
.++..|+..+. +.+..++..+..+||-+. ..+..+++.+++.|. +.++.+|+.++.+++--..+..
T Consensus 507 ~ai~~LL~~~~e~~~e~vrR~aalgLGll~------------~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTG 574 (963)
T 4ady_A 507 EAIHDMFTYSQETQHGNITRGLAVGLALIN------------YGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTG 574 (963)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHT------------TTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhhh------------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCC
Confidence 78888888754 456667888888888442 223345888888765 6789999999888764443322
Q ss_pred hhHHHHHhcCchHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHH-HhCCCCHHHHHHHHHHHH
Q 000133 638 DLRESSIAVKTLWSVMKLL-DVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVV-LAGSPVLEVAEQATCALA 715 (2100)
Q Consensus 638 ~~~~~~~~~g~v~~Lv~lL-~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~-ll~~~~~evr~~aa~aL~ 715 (2100)
+. .+|..|+..+ .+.+..+++.|+.+|+-+..+.+ ..++.++. ++.+.++.+|..++.||+
T Consensus 575 n~-------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~----------e~v~rlv~~L~~~~d~~VR~gAalALG 637 (963)
T 4ady_A 575 NN-------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY----------TTVPRIVQLLSKSHNAHVRCGTAFALG 637 (963)
T ss_dssp CH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC----------SSHHHHTTTGGGCSCHHHHHHHHHHHH
T ss_pred CH-------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH----------HHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 11 2455555554 56678899999999998866542 45677776 556789999999999999
Q ss_pred HHhcCcHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCc
Q 000133 716 NLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRK 763 (2100)
Q Consensus 716 ~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~ 763 (2100)
.+..+++. ..++..|.+++.+.+..+|.+|+-+|..+.....
T Consensus 638 li~aGn~~------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtn 679 (963)
T 4ady_A 638 IACAGKGL------QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQT 679 (963)
T ss_dssp HHTSSSCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCC
T ss_pred HhccCCCc------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCc
Confidence 99866543 2467888888988899999999999999886544
No 85
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=98.61 E-value=2.7e-08 Score=105.03 Aligned_cols=106 Identities=15% Similarity=0.191 Sum_probs=84.5
Q ss_pred CCCceeeeeccchhhhhhCCCcceEEEecCC---CCCccccccccCCCccccccceeccccCC-CCCeEEEEeecCCccC
Q 000133 1978 PGTLVVIIKRGNNMKQSVGNPSVYCKLTLGN---TPPRQTKIVSTGPNPEWEESFAWSFEIPP-KGQKLHISCKNKSKMG 2053 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 2053 (2100)
.|.|+|+|.+..+ +...|.+.-|+++.++. ...++|||++++.||+|+|.|.|.+..+. .+..|.++|++++.||
T Consensus 25 ~~~L~V~v~~a~~-~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~~~ 103 (138)
T 1wfm_A 25 KAELFVTRLEAVT-SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFS 103 (138)
T ss_dssp TTEEEEEEEEEEC-CCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSSC
T ss_pred CCEEEEEEEEEEc-CCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCCCC
Confidence 4789999999985 34556677888888852 23578999999999999999999876332 2569999999999998
Q ss_pred Ccc-cceEEEEEeeEEeecccccceeecCCCC
Q 000133 2054 KSS-FGKVTIQIDRVVMLGAVAGEYTLLPESK 2084 (2100)
Q Consensus 2054 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2084 (2100)
++. +|++.|++..+-.......-|.|.+..|
T Consensus 104 ~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~~~ 135 (138)
T 1wfm_A 104 RHSVAGELRLGLDGTSVPLGAAQWGELKTSGP 135 (138)
T ss_dssp TTSCSEEEEEESSSSSSCTTCCEEEECCCCSC
T ss_pred CCcEEEEEEEEcccccCcccccceeeCcCCCc
Confidence 765 5999999999865666777888877654
No 86
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}
Probab=98.61 E-value=9.8e-09 Score=112.75 Aligned_cols=105 Identities=24% Similarity=0.425 Sum_probs=88.6
Q ss_pred CCCceeeeeccchhhhh---hCCCcceEEEecCCCC----CccccccccCCCccccccceeccccCCCCCeEEEEee-cC
Q 000133 1978 PGTLVVIIKRGNNMKQS---VGNPSVYCKLTLGNTP----PRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCK-NK 2049 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 2049 (2100)
.|.|+|+|++..++... .|...-|+++.+++.. .++|+|++++.||+|+|.|.|.+ ++..+.|+|+|+ ++
T Consensus 29 ~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v--~~~~~~L~~~V~~d~ 106 (171)
T 2q3x_A 29 KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDE--SPQGKVLQVIVWGDY 106 (171)
T ss_dssp TTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSS--CCTTEEEEEEEEEEC
T ss_pred CCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEe--cCCCCEEEEEEEEcC
Confidence 58899999999999864 4667789988887543 77899999999999999998876 466789999999 99
Q ss_pred CccCCc-ccceEEEEEeeEEeecccccceeecCCCC
Q 000133 2050 SKMGKS-SFGKVTIQIDRVVMLGAVAGEYTLLPESK 2084 (2100)
Q Consensus 2050 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2084 (2100)
+.||++ .+|++.|.++.+.....+.+-|.|.+.++
T Consensus 107 d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~~~ 142 (171)
T 2q3x_A 107 GRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPPSS 142 (171)
T ss_dssp STTCSSEEEEEEEECGGGSCTTSCEEEEEECBCGGG
T ss_pred CCCCCCCEEEEEEEEHHHcccCCCcceeEECCCccc
Confidence 999875 66999999999987777888899977754
No 87
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Probab=98.58 E-value=2.3e-08 Score=106.46 Aligned_cols=104 Identities=18% Similarity=0.254 Sum_probs=84.7
Q ss_pred CCCceeeeeccchhhh--hhCCCcceEEEecC--CCCCccccccccCCCccccccceeccccCC-CCCeEEEEeecCCcc
Q 000133 1978 PGTLVVIIKRGNNMKQ--SVGNPSVYCKLTLG--NTPPRQTKIVSTGPNPEWEESFAWSFEIPP-KGQKLHISCKNKSKM 2052 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 2052 (2100)
.|.|+|+|++..++.. ..|.+.-|+.+.++ +...++|+|++++.||+|+|.|.|.+..+. .+..|+|+|++++.|
T Consensus 33 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~ 112 (143)
T 3f04_A 33 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRF 112 (143)
T ss_dssp TTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSS
T ss_pred CCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCCC
Confidence 4789999999999864 35667788888884 445788999999999999999998875332 457999999999999
Q ss_pred CCcc-cceEEEEEeeEEeecccccceeecC
Q 000133 2053 GKSS-FGKVTIQIDRVVMLGAVAGEYTLLP 2081 (2100)
Q Consensus 2053 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 2081 (2100)
|++. +|+++|+++.+-.......-|.|.+
T Consensus 113 ~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 142 (143)
T 3f04_A 113 SKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142 (143)
T ss_dssp SCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred CCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence 8755 6999999999866666677777754
No 88
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2
Probab=98.57 E-value=1.3e-08 Score=108.30 Aligned_cols=106 Identities=21% Similarity=0.375 Sum_probs=86.8
Q ss_pred CCCceeeeeccchhhhh--hCCCcceEEEecCCCC-------------CccccccccCCCccccccceec-cccC-CCCC
Q 000133 1978 PGTLVVIIKRGNNMKQS--VGNPSVYCKLTLGNTP-------------PRQTKIVSTGPNPEWEESFAWS-FEIP-PKGQ 2040 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~ 2040 (2100)
.|.|+|+|++..++... .|.+.-|+++.+++.+ .++|+|++++.||+|+|.|.|. +... +..+
T Consensus 17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~ 96 (142)
T 1rh8_A 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK 96 (142)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCC
Confidence 58899999999999753 5667789999998653 4789999999999999999986 4321 2577
Q ss_pred eEEEEeecCCccCCcc-cceEEEEEeeEEeecccccceeecCCC
Q 000133 2041 KLHISCKNKSKMGKSS-FGKVTIQIDRVVMLGAVAGEYTLLPES 2083 (2100)
Q Consensus 2041 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2083 (2100)
.|+|+|++++.||++. +|++.|++..+...+....-|.|.+.+
T Consensus 97 ~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~ 140 (142)
T 1rh8_A 97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT 140 (142)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred EEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCccC
Confidence 9999999999998665 599999999987767777888886543
No 89
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A
Probab=98.56 E-value=4e-08 Score=102.98 Aligned_cols=116 Identities=15% Similarity=0.201 Sum_probs=86.0
Q ss_pred CCceeeeeccchhhh--hhCCCcceEEEecCC-CCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCC-
Q 000133 1979 GTLVVIIKRGNNMKQ--SVGNPSVYCKLTLGN-TPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGK- 2054 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 2054 (2100)
..|.|+|++..++.. ..|.+.-|+.+.++. +...+|+|++++.||+|+|.|.|.+.. ++.|+|+|++++.||+
T Consensus 5 ~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~---~~~l~~~v~d~d~~~~~ 81 (132)
T 3pyc_A 5 IKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGK---TDSITISVWNHKKIHKK 81 (132)
T ss_dssp EEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEET---TCCEEEEEEEGGGTTSS
T ss_pred EEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCC---CCEEEEEEEECCCCCCC
Confidence 468999999999953 456677899998864 678899999999999999999998863 3569999999999996
Q ss_pred ---cccceEEEEEeeEEeecc-cccceeecCCCCCCC---CcceEEEEEe
Q 000133 2055 ---SSFGKVTIQIDRVVMLGA-VAGEYTLLPESKSGP---SRNLEIEFLW 2097 (2100)
Q Consensus 2055 ---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~ 2097 (2100)
+.+|+++|+++.+-..+. -...|.|...+++++ .=.|.|+|.|
T Consensus 82 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 82 QGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQT 131 (132)
T ss_dssp TTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred CCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence 678999999887633221 124577755422221 2245666654
No 90
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2
Probab=98.53 E-value=4.3e-08 Score=105.51 Aligned_cols=103 Identities=18% Similarity=0.245 Sum_probs=82.5
Q ss_pred CCCceeeeeccchhhhh--hCCCcceEEEecC--CCCCccccccccCCCccccccceeccccCC-CCCeEEEEeecCCcc
Q 000133 1978 PGTLVVIIKRGNNMKQS--VGNPSVYCKLTLG--NTPPRQTKIVSTGPNPEWEESFAWSFEIPP-KGQKLHISCKNKSKM 2052 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 2052 (2100)
.|.|+|+|++..++... .|.+.-|+++.++ +...++|+|++++.||+|+|.|.|.+..+. .++.|+|+|++++.|
T Consensus 41 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~ 120 (152)
T 1rsy_A 41 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRF 120 (152)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSS
T ss_pred CCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCCC
Confidence 58899999999999653 4567788888885 346778999999999999999999765221 468999999999999
Q ss_pred CCc-ccceEEEEEeeEEeecccccceeec
Q 000133 2053 GKS-SFGKVTIQIDRVVMLGAVAGEYTLL 2080 (2100)
Q Consensus 2053 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 2080 (2100)
+++ .+|++.|.+..+........-|.|.
T Consensus 121 ~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 149 (152)
T 1rsy_A 121 SKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 149 (152)
T ss_dssp SCCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred CCCcEEEEEEEEchhccCCCCcceEEECC
Confidence 865 4599999999886554556667664
No 91
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2
Probab=98.53 E-value=2.4e-08 Score=104.24 Aligned_cols=101 Identities=19% Similarity=0.321 Sum_probs=76.9
Q ss_pred CCCceeeeeccchhhhh--hCCCcceEEEecC----CCCCccccccccCCCccccccceeccccC--CCCCeEEEEeecC
Q 000133 1978 PGTLVVIIKRGNNMKQS--VGNPSVYCKLTLG----NTPPRQTKIVSTGPNPEWEESFAWSFEIP--PKGQKLHISCKNK 2049 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 2049 (2100)
.|.|.|+|++..++... .|.+.-|+.+.+. ....++|+|++++.||+|+|.|.|....+ ..++.|+|+|+++
T Consensus 17 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~ 96 (129)
T 2bwq_A 17 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQ 96 (129)
T ss_dssp TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEEC
Confidence 47899999999999753 3446788888773 34677899999999999999999885322 2567999999999
Q ss_pred CccC---CcccceEEEEEeeEEeecccccceee
Q 000133 2050 SKMG---KSSFGKVTIQIDRVVMLGAVAGEYTL 2079 (2100)
Q Consensus 2050 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 2079 (2100)
+.+| .+.+|++.|+++++...+ ..+-|.|
T Consensus 97 d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L 128 (129)
T 2bwq_A 97 ARVREEESEFLGEILIELETALLDD-EPHWYKL 128 (129)
T ss_dssp -------CEEEEEEEEEGGGCCCSS-CEEEEEC
T ss_pred CcCcCcCCceeEEEEEEccccCCCc-CCccEEC
Confidence 9998 466799999999987765 5566655
No 92
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Probab=98.53 E-value=2.4e-08 Score=106.97 Aligned_cols=106 Identities=20% Similarity=0.261 Sum_probs=86.6
Q ss_pred CCCceeeeeccchhhhh---hCCCcceEEEecCCCC----CccccccccCCCccccccceeccccCC-CCCeEEEEeecC
Q 000133 1978 PGTLVVIIKRGNNMKQS---VGNPSVYCKLTLGNTP----PRQTKIVSTGPNPEWEESFAWSFEIPP-KGQKLHISCKNK 2049 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 2049 (2100)
.|.|+|+|++..++... .|.+.-|+++.++..+ .++|+|++++.||+|+|.|.|.+..+. .+..|.|+|+++
T Consensus 22 ~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~ 101 (148)
T 3fdw_A 22 TQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHH 101 (148)
T ss_dssp TTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEE
T ss_pred CCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEEC
Confidence 47899999999999742 4557788888887433 568999999999999999998865332 355899999999
Q ss_pred CccCCc-ccceEEEEEeeEEeecccccceeecCCC
Q 000133 2050 SKMGKS-SFGKVTIQIDRVVMLGAVAGEYTLLPES 2083 (2100)
Q Consensus 2050 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2083 (2100)
+.||++ .+|++.|+++.+...+....-|.|.+.+
T Consensus 102 d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~ 136 (148)
T 3fdw_A 102 GRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKI 136 (148)
T ss_dssp CGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC-
T ss_pred CCCcCCcEEEEEEEEcccccccCCccceEECcCcc
Confidence 999875 4699999999998777888899998873
No 93
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.50 E-value=5.4e-08 Score=103.46 Aligned_cols=106 Identities=22% Similarity=0.360 Sum_probs=85.6
Q ss_pred CCCceeeeeccchhhhh--hCCCcceEEEecCC----CCCccccccccCCCccccccceeccccCC-CCCeEEEEeecCC
Q 000133 1978 PGTLVVIIKRGNNMKQS--VGNPSVYCKLTLGN----TPPRQTKIVSTGPNPEWEESFAWSFEIPP-KGQKLHISCKNKS 2050 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 2050 (2100)
.|.|.|+|++..++... .| +.-|+++.+.. ...++|+|++++.||+|+|.|.|.+..+. .+..|+|+|++++
T Consensus 23 ~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d 101 (142)
T 2dmg_A 23 RNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSG 101 (142)
T ss_dssp TTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECC
T ss_pred CCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECC
Confidence 57899999999999743 56 77888887752 25678999999999999999999864211 3459999999999
Q ss_pred ccCC---cccceEEEEEeeEEeecccccceeecCCCC
Q 000133 2051 KMGK---SSFGKVTIQIDRVVMLGAVAGEYTLLPESK 2084 (2100)
Q Consensus 2051 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2084 (2100)
.||+ +.+|++.|++..+.....+..-|.|.+.++
T Consensus 102 ~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~~~ 138 (142)
T 2dmg_A 102 GFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDSG 138 (142)
T ss_dssp CSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCSCS
T ss_pred CccccCCcEEEEEEEecccccccccccceeeccCCCC
Confidence 9984 478999999999877777888899977654
No 94
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.48 E-value=4.7e-07 Score=122.07 Aligned_cols=216 Identities=12% Similarity=0.109 Sum_probs=145.9
Q ss_pred CcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHH-HhccCCCHHHHHHHHHHHHHHhcC-ChhhH
Q 000133 442 EGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLV-QILESGSAKAKEDSASILRNLCNH-SEDIR 519 (2100)
Q Consensus 442 g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv-~lL~~~~~~vre~A~~aL~~L~~~-~~~~~ 519 (2100)
..|.++++.|+++++..|..|+++|+||+. ++..+..+...++|.+++ .+|.+++.++|+.|+++|.||+.+ .++.+
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 345667788999999999999999999995 788899999999998765 578889999999999999999964 46788
Q ss_pred HHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHH
Q 000133 520 ACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILRE 599 (2100)
Q Consensus 520 ~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~ 599 (2100)
..+.+.|++++|..+++..... +..+...... ....-..++ +++..+++.+|.+++... .+ ...
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~--------~~~~~~~~~~-~~~~~~~~~----~~~~~~~l~lL~~L~e~s--~~-~~~ 176 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLET--------LTTSEPPFSK-LLKAQQRLV----WDITGSLLVLIGLLALAR--DE-IHE 176 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHH--------HHCBTTBGGG-SCHHHHHHH----HHHHHHHHHHHHHHHHHC--HH-HHH
T ss_pred HHHHHcChHHHHHHHHHhhHHH--------Hhhhcccccc-ccHHHHHHH----HHHHHHHHHHHHHHHhCC--HH-HHH
Confidence 8899999999999998752111 1100000000 000000000 011122333333333221 11 233
Q ss_pred hhhccchHHHHHHHhcC---CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHH---HHHhhcCCCHHHHHHHHHHHHH
Q 000133 600 GSAANDAVETMIKILSS---TKEETQAKSASALAGIFETRKDLRESSIAVKTLWS---VMKLLDVGSECILVEASRCLAA 673 (2100)
Q Consensus 600 ~i~~~~~i~~Lv~lL~s---~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~---Lv~lL~~~~~~v~~~aa~aL~~ 673 (2100)
.+...++++.|+.+|.+ ...+++..|+.+|..++.++++..+.+...+.... +..+..+.+ ..+..+++.+.|
T Consensus 177 ~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~-~~~~la~giL~N 255 (684)
T 4gmo_A 177 AVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTD-PRAVMACGVLHN 255 (684)
T ss_dssp HHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSC-TTHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCc-HHHHHHHHHHHh
Confidence 45567889999998743 35789999999999999999988888888764333 222223333 356778888888
Q ss_pred Hh
Q 000133 674 IF 675 (2100)
Q Consensus 674 L~ 675 (2100)
+.
T Consensus 256 i~ 257 (684)
T 4gmo_A 256 VF 257 (684)
T ss_dssp HH
T ss_pred Hh
Confidence 74
No 95
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=98.46 E-value=9.8e-08 Score=100.83 Aligned_cols=109 Identities=17% Similarity=0.312 Sum_probs=84.5
Q ss_pred CCCceeeeeccchhhhhh---CCCcceEEEecCC--CCCccccccccCCCccccccceec-cccCC-CCCeEEEEeecCC
Q 000133 1978 PGTLVVIIKRGNNMKQSV---GNPSVYCKLTLGN--TPPRQTKIVSTGPNPEWEESFAWS-FEIPP-KGQKLHISCKNKS 2050 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~ 2050 (2100)
.|.|.|+|++..++...- |.+.-|+++.+++ ...++|+|++++.||+|+|.|.|. +.... ....|+|+|++++
T Consensus 21 ~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d 100 (138)
T 1ugk_A 21 RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFD 100 (138)
T ss_dssp GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEEC
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEECC
Confidence 478999999999997542 4466888888863 467789999999999999999984 44222 4569999999999
Q ss_pred ccCCc-ccceEEEEEeeEEe-ecccccceeecCCCCCC
Q 000133 2051 KMGKS-SFGKVTIQIDRVVM-LGAVAGEYTLLPESKSG 2086 (2100)
Q Consensus 2051 ~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 2086 (2100)
.||++ .+|++.|++..+.. .|...-.|.|.+...+|
T Consensus 101 ~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~sG 138 (138)
T 1ugk_A 101 RFSRDDIIGEVLIPLSGIELSEGKMLMNREIISGPSSG 138 (138)
T ss_dssp SSCCCCCCEEEEEECTTCCCTTCCEEEEEECBSSSSCC
T ss_pred CCCCCcEEEEEEEehhHccCCCCcchhhhhhhcCCCCC
Confidence 99876 56999999999876 35555567776654444
No 96
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Probab=98.45 E-value=6.6e-08 Score=105.85 Aligned_cols=103 Identities=16% Similarity=0.268 Sum_probs=82.5
Q ss_pred hcCCCceeeeeccchhh--hhhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccC
Q 000133 1976 CLPGTLVVIIKRGNNMK--QSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMG 2053 (2100)
Q Consensus 1976 ~i~~~~~~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2053 (2100)
+-.|.|.|+|++..++. ...|.+.-|+.+.+++ ..++|+|++++.||+|+|.|.|.++ | .+.|.|+|+|++.||
T Consensus 33 ~~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~-~~~kT~v~~~tlnP~Wne~f~f~v~--~-~~~L~~~V~D~d~~~ 108 (173)
T 2nq3_A 33 TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDG-QSKKTEKCNNTNSPKWKQPLTVIVT--P-VSKLHFRVWSHQTLK 108 (173)
T ss_dssp SCCEEEEEEEEEEEECCCC--CCCCCEEEEEEETT-EEEECCCCSSCSSCEEEEEEEEEEC--T-TCEEEEEEEECCSSS
T ss_pred CCceEEEEEEEEeECCCCcccCCCCCeEEEEEECC-EEeEccccCCCCCCeECCEEEEEeC--C-CCEEEEEEEECCCCC
Confidence 44678999999999996 3455577899999976 8889999999999999999999874 3 889999999999998
Q ss_pred Cc-ccceEEEEEeeEEee--cc---cccceeecCC
Q 000133 2054 KS-SFGKVTIQIDRVVML--GA---VAGEYTLLPE 2082 (2100)
Q Consensus 2054 ~~-~~~~~~~~~~~~~~~--~~---~~~~~~~~~~ 2082 (2100)
++ .+|++.|.+..+... +. ..-.|.|...
T Consensus 109 ~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~ 143 (173)
T 2nq3_A 109 SDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD 143 (173)
T ss_dssp CCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEES
T ss_pred CCceEEEEEEEHHHhcccCCCCcceeEEEEECccC
Confidence 77 569999999988642 11 1235666554
No 97
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}
Probab=98.40 E-value=3.9e-08 Score=105.59 Aligned_cols=103 Identities=15% Similarity=0.163 Sum_probs=79.8
Q ss_pred CCCceeeeeccchhhhh--hCCCcceEEEecCCC-----CCccccccccCCCccccccceeccccCC-CCCeEEEEeecC
Q 000133 1978 PGTLVVIIKRGNNMKQS--VGNPSVYCKLTLGNT-----PPRQTKIVSTGPNPEWEESFAWSFEIPP-KGQKLHISCKNK 2049 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 2049 (2100)
.|.|+|+|.+..++... .|.+.-|+++.++.. ..++|||++++.||+|||.|.|.+..+. ....|+|+|+++
T Consensus 42 ~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d~ 121 (155)
T 2z0u_A 42 NKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTT 121 (155)
T ss_dssp TTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEEE
T ss_pred CCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEEC
Confidence 47899999999999764 455678888888652 2579999999999999999999865321 356899999999
Q ss_pred CccCCccc-ceEEEEEeeEEe-ecccccceeec
Q 000133 2050 SKMGKSSF-GKVTIQIDRVVM-LGAVAGEYTLL 2080 (2100)
Q Consensus 2050 ~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~ 2080 (2100)
+.||++.+ |++.|.+..+.. ......-|.|.
T Consensus 122 d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~ 154 (155)
T 2z0u_A 122 DRSHLEECLGGAQISLAEVCRSGERSTRWYNLL 154 (155)
T ss_dssp CTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred CCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence 99987664 999999988742 23334445553
No 98
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Probab=98.36 E-value=6.9e-08 Score=102.61 Aligned_cols=94 Identities=22% Similarity=0.352 Sum_probs=75.5
Q ss_pred CCCceeeeeccchhhhh--hCCCcceEEEecCC----CCCccccccccCCCccccccceec-cccC-CCCCeEEEEeecC
Q 000133 1978 PGTLVVIIKRGNNMKQS--VGNPSVYCKLTLGN----TPPRQTKIVSTGPNPEWEESFAWS-FEIP-PKGQKLHISCKNK 2049 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~ 2049 (2100)
.|.|.|+|++..++... .|.+.-|+++.+++ ...++|+|++++.||+|+|.|.|. +... +....|+|+|+++
T Consensus 28 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~ 107 (142)
T 2chd_A 28 NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDE 107 (142)
T ss_dssp GTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEEE
T ss_pred CCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEEC
Confidence 57899999999999754 45577899888875 357789999999999999999886 4321 1246999999999
Q ss_pred CccCCc-ccceEEEEEeeEEeec
Q 000133 2050 SKMGKS-SFGKVTIQIDRVVMLG 2071 (2100)
Q Consensus 2050 ~~~~~~-~~~~~~~~~~~~~~~~ 2071 (2100)
+.||++ .+|++.|++..+...+
T Consensus 108 d~~~~d~~iG~~~i~l~~l~~~~ 130 (142)
T 2chd_A 108 DKFGHNEFIGETRFSLKKLKANQ 130 (142)
T ss_dssp CTTSCEEEEEEEEEEGGGCCTTC
T ss_pred CCCCCCcEEEEEEEEHHHcCCCC
Confidence 999875 5699999999875433
No 99
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1
Probab=98.34 E-value=1.7e-07 Score=97.57 Aligned_cols=86 Identities=19% Similarity=0.293 Sum_probs=68.2
Q ss_pred CCceeeeeccchhhhhhCCCcceEEEecCCCCCccccccc-cCCCccccccceeccccCCCCCeEEEEeecCCccCCc-c
Q 000133 1979 GTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVS-TGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKS-S 2056 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 2056 (2100)
|.|+|+|.+..++. ..|.+.-++.++ +..++|++++ ++.||+|||.|.|.+. +....|+|+|+|++ |+++ .
T Consensus 5 ~~L~V~V~~A~~l~-~~g~~DPYv~v~---~~~~kt~~~~~~t~nP~WnE~f~f~v~--~~~~~L~~~V~D~d-~~~dd~ 77 (131)
T 2cjt_A 5 SLLCVGVKKAKFDG-AQEKFNTYVTLK---VQNVKSTTIAVRGSQPSWEQDFMFEIN--RLDLGLTVEVWNKG-LIWDTM 77 (131)
T ss_dssp EEEEEEEEEEECSS-CGGGCEEEEEEE---ETTEEEECCCEESSSCEEEEEEEEEEC--CCSSEEEEEEEECC-SSCEEE
T ss_pred eEEEEEEEEeECCC-CCCCcCeEEEEE---ecCEEEeEecCCCCCceECCEEEEEEe--CCCCeEEEEEEECC-CCCCCe
Confidence 67999999998774 356667888888 3345566665 7999999999999876 34568999999999 7665 5
Q ss_pred cceEEEEEeeEEeec
Q 000133 2057 FGKVTIQIDRVVMLG 2071 (2100)
Q Consensus 2057 ~~~~~~~~~~~~~~~ 2071 (2100)
+|+++|.+..+...+
T Consensus 78 iG~~~i~l~~l~~~~ 92 (131)
T 2cjt_A 78 VGTVWIPLRTIRQSN 92 (131)
T ss_dssp EEEEEEEGGGSCBCS
T ss_pred EEEEEEEHHHhhhcC
Confidence 599999999987665
No 100
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.30 E-value=1.3e-05 Score=108.26 Aligned_cols=293 Identities=12% Similarity=0.052 Sum_probs=211.4
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcc-cHHHHHhcC
Q 000133 406 VGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDD-SKWAITAAG 484 (2100)
Q Consensus 406 v~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~-~~~~i~~~g 484 (2100)
+.-+...+..-+..++..+.++..+..... ....+.+..|.+.+.+.+.. +.|+.++..|+..... ...+.+--+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~ 95 (986)
T 2iw3_A 20 FQKLSVATADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQ 95 (986)
T ss_dssp HHHHTTCCTTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHT
T ss_pred HhhccccchhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHH
Confidence 333443334445677778888766532211 11125678888888877655 8899999999853321 112333336
Q ss_pred ChHHHHHhccCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHhCCcHHHHHHHhhcC-ChhHHHHHHHHHHHHhcCCC----
Q 000133 485 GIPPLVQILESGSAKAKEDSASILRNLCNH-SEDIRACVESADAVPALLWLLKNG-SANGKEIAAKTLNHLIHKSD---- 558 (2100)
Q Consensus 485 ~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~-~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~Aa~aL~~L~~~~~---- 558 (2100)
.+|.++..+.+....+|+.|..++..+... ++..- ..++|.|+..|++. .|..|..|..++..|+....
T Consensus 96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~ 170 (986)
T 2iw3_A 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVA 170 (986)
T ss_dssp THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHH
Confidence 789999999999999999888777777643 23332 23689999999875 69999999999999987542
Q ss_pred ---CCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 000133 559 ---TATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFET 635 (2100)
Q Consensus 559 ---~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~ 635 (2100)
++.+|.+...+.|..++++..+..++-.++.+.++.|+ . .-+|.|++.+.++++ +. .+...|....+.
T Consensus 171 ~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-~------~~~~~~~~~~~~p~~-~~-~~~~~l~~~tfv 241 (986)
T 2iw3_A 171 LRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-E------RFIPSLIQCIADPTE-VP-ETVHLLGATTFV 241 (986)
T ss_dssp HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-G------GGHHHHHHHHHCTTH-HH-HHHHHHTTCCCC
T ss_pred HhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-h------hhHHHHHHHhcChhh-hH-HHHHHhhcCeeE
Confidence 36788888899999999999999999999998887772 2 239999999998855 32 334444443333
Q ss_pred ChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhC-CCCHHHHHHHHHHH
Q 000133 636 RKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAG-SPVLEVAEQATCAL 714 (2100)
Q Consensus 636 ~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~-~~~~evr~~aa~aL 714 (2100)
. ..+.+..+-.+|.|.+.|..++..++++++-++.|||.-..+.......-...+|.|.+... ..+||+|+.+..|+
T Consensus 242 ~--~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~ 319 (986)
T 2iw3_A 242 A--EVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRAL 319 (986)
T ss_dssp S--CCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHH
T ss_pred e--eecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHH
Confidence 1 22334445579999999999999999999999999998877777775555667777776554 48999999999999
Q ss_pred HHHh
Q 000133 715 ANLI 718 (2100)
Q Consensus 715 ~~L~ 718 (2100)
..|.
T Consensus 320 ~~l~ 323 (986)
T 2iw3_A 320 KTLR 323 (986)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8884
No 101
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Probab=98.30 E-value=3e-07 Score=100.51 Aligned_cols=101 Identities=23% Similarity=0.255 Sum_probs=79.7
Q ss_pred CCCceeeeeccchhhhh--hCCCcceEEEecCCC----CCccccccccCCCccccccceeccccCC-CCCeEEEEeecCC
Q 000133 1978 PGTLVVIIKRGNNMKQS--VGNPSVYCKLTLGNT----PPRQTKIVSTGPNPEWEESFAWSFEIPP-KGQKLHISCKNKS 2050 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 2050 (2100)
.|.|+|+|++..++... .|.+.-|+++.+++. ..++|+|++++.||+|+|.|.|.+..+. .+..|.|+|++++
T Consensus 36 ~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d 115 (166)
T 2cm5_A 36 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYD 115 (166)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECC
T ss_pred CCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEECC
Confidence 57899999999999653 566778999888753 6788999999999999999998875322 3679999999999
Q ss_pred ccCCc-ccceEEEEEeeEEeecccccceeec
Q 000133 2051 KMGKS-SFGKVTIQIDRVVMLGAVAGEYTLL 2080 (2100)
Q Consensus 2051 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 2080 (2100)
.||++ .+|++.|.++.+ ...+..-|.|.
T Consensus 116 ~~~~~~~iG~~~i~l~~~--~~~~~~W~~l~ 144 (166)
T 2cm5_A 116 IGKSNDYIGGCQLGISAK--GERLKHWYECL 144 (166)
T ss_dssp SSSCCEEEEEEEEETTCC--HHHHHHHHHHH
T ss_pred CCCCCcEEEeEEEecccC--CchhHHHHHHH
Confidence 99875 569999999874 22344445553
No 102
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=98.27 E-value=8e-07 Score=106.59 Aligned_cols=120 Identities=17% Similarity=0.223 Sum_probs=93.4
Q ss_pred CCCceeeeeccchhhh--hhCCCcceEEEecCC--CCCccccccccCCCccccccceeccccC-CCCCeEEEEeecCCcc
Q 000133 1978 PGTLVVIIKRGNNMKQ--SVGNPSVYCKLTLGN--TPPRQTKIVSTGPNPEWEESFAWSFEIP-PKGQKLHISCKNKSKM 2052 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 2052 (2100)
.|.|.|+|.+..++.. ..|.+.-++.+.+++ +..++|+|++++.||+|+|.|.|.+..+ ..++.|.|+|++++.|
T Consensus 18 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~~ 97 (284)
T 2r83_A 18 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRF 97 (284)
T ss_dssp TTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCSS
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECCCC
Confidence 5889999999999974 345577899888874 4567899999999999999999986533 2468999999999999
Q ss_pred CCc-ccceEEEEEeeEEeecccccceeecCCCCC--CCCcceEEEEEe
Q 000133 2053 GKS-SFGKVTIQIDRVVMLGAVAGEYTLLPESKS--GPSRNLEIEFLW 2097 (2100)
Q Consensus 2053 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 2097 (2100)
|++ .+|++.|++..+...+.+..-|.|.+.++. ...-.+.+.+.|
T Consensus 98 ~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~G~i~l~l~~ 145 (284)
T 2r83_A 98 SKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRY 145 (284)
T ss_dssp SCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCCCCCCEEEEEEEE
T ss_pred CCCceeEEEEEcchhcccCCcceeEEEeeccccccccccccEEEEEEe
Confidence 864 559999999999887778888999765432 122234455554
No 103
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Probab=98.26 E-value=2.6e-07 Score=99.49 Aligned_cols=102 Identities=14% Similarity=0.235 Sum_probs=79.1
Q ss_pred CCCceeeeeccchhhhh--hCCCcceEEEecCCCC----CccccccccCCCccccccceeccccCCC-CCeEEEEeecCC
Q 000133 1978 PGTLVVIIKRGNNMKQS--VGNPSVYCKLTLGNTP----PRQTKIVSTGPNPEWEESFAWSFEIPPK-GQKLHISCKNKS 2050 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 2050 (2100)
+|.|.|+|++..++... .|.+.-|+++.+++.. .++|+|++++.||+|+|.|.|.+..+.. +..|+|+|+|++
T Consensus 29 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~d 108 (153)
T 1w15_A 29 TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSE 108 (153)
T ss_dssp TTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECC
T ss_pred CCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeCC
Confidence 58899999999999753 4567789988886433 5689999999999999999998764332 468999999999
Q ss_pred ccCCcc-cceEEEEEeeEEeecccccceeecC
Q 000133 2051 KMGKSS-FGKVTIQIDRVVMLGAVAGEYTLLP 2081 (2100)
Q Consensus 2051 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 2081 (2100)
.||++. +|++.|++.. ....+..-|.|..
T Consensus 109 ~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~ 138 (153)
T 1w15_A 109 RGSRNEVIGRLVLGATA--EGSGGGHWKEICD 138 (153)
T ss_dssp TTSCCEEEEEEEESTTC--CSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEEECCCC--CchHHHHHHHHHh
Confidence 998665 5999999987 4445666676644
No 104
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}
Probab=98.22 E-value=7.1e-07 Score=114.18 Aligned_cols=97 Identities=18% Similarity=0.214 Sum_probs=81.4
Q ss_pred CCCceeeeeccchhhhh-hCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCC-c
Q 000133 1978 PGTLVVIIKRGNNMKQS-VGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGK-S 2055 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 2055 (2100)
+|.|.|+|++..+++.. .|.+.-++++.+|+ ...+|||++++.||+|+|.|.|.+...+.++.|.|+|+|++.+++ +
T Consensus 393 ~~~L~V~V~~A~~L~~D~~g~sDPYV~v~l~~-~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~dD 471 (540)
T 3nsj_A 393 LAHLVVSNFRAEHLWGDYTTATDAYLKVFFGG-QEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDD 471 (540)
T ss_dssp EEEEEEEEEEEESCCCSSCSCCCEEEEEEETT-EEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSCCE
T ss_pred ccEEEEEEEEccCCCcccCCCcCeEEEEEECC-EeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 47899999999998764 34566888999985 468999999999999999999986545678999999999999988 6
Q ss_pred ccceEEEEEeeEEeecccccceee
Q 000133 2056 SFGKVTIQIDRVVMLGAVAGEYTL 2079 (2100)
Q Consensus 2056 ~~~~~~~~~~~~~~~~~~~~~~~~ 2079 (2100)
.+|+|++.+. .|.....+.|
T Consensus 472 ~LG~~~~~L~----~g~~~~~~~l 491 (540)
T 3nsj_A 472 LLGSCDRSPH----SGFHEVTCEL 491 (540)
T ss_dssp EEEEEEECCC----SEEEEEEEEC
T ss_pred EEEEEEEEee----CCcEEEEEEc
Confidence 7799999987 4666666666
No 105
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}
Probab=98.22 E-value=3.6e-07 Score=96.51 Aligned_cols=100 Identities=22% Similarity=0.328 Sum_probs=77.7
Q ss_pred CCCceeeeeccchhhh--hhCCCcceEEEecCCC----CCccccccccCCCccccccceeccccCC-CCCeEEEEeecCC
Q 000133 1978 PGTLVVIIKRGNNMKQ--SVGNPSVYCKLTLGNT----PPRQTKIVSTGPNPEWEESFAWSFEIPP-KGQKLHISCKNKS 2050 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 2050 (2100)
.|.|+|+|.+..++.. ..|.+.-|+++.+++. ..++|+|++++.||+|+|.|.|.+..+. .+..|+|+|++++
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d~~ 94 (138)
T 3n5a_A 15 ANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKD 94 (138)
T ss_dssp TTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEECC
T ss_pred CCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEECC
Confidence 3789999999999975 3455778998888754 3667999999999999999998865333 2368999999999
Q ss_pred ccCCc-ccceEEEEEeeEEeecccccceee
Q 000133 2051 KMGKS-SFGKVTIQIDRVVMLGAVAGEYTL 2079 (2100)
Q Consensus 2051 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 2079 (2100)
.||++ .+|++.|+++. ....+..-|.|
T Consensus 95 ~~~~~~~lG~~~i~l~~--~~~~~~~W~~l 122 (138)
T 3n5a_A 95 KLSRNDVIGKIYLSWKS--GPGEVKHWKDM 122 (138)
T ss_dssp SSSCCEEEEEEEESSSS--CHHHHHHHHHH
T ss_pred CCCCCcEEEEEEEcccc--CChHHHHHHHH
Confidence 99876 45999999986 23334444555
No 106
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1
Probab=98.21 E-value=6.1e-07 Score=97.30 Aligned_cols=86 Identities=19% Similarity=0.288 Sum_probs=68.4
Q ss_pred CCceeeeeccchhhhhhCCCcceEEEecCCCCCccccccc-cCCCccccccceeccccCCCCCeEEEEeecCCccCCc-c
Q 000133 1979 GTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVS-TGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKS-S 2056 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 2056 (2100)
|.|.|+|.+..++. ..|...-++.++ +..++|++++ ++.||+|||.|.|.+.. ....|+|+|+|++ |+++ .
T Consensus 14 ~~L~V~V~~A~~l~-~~g~~DPYV~v~---~~~~kt~~~~~~t~nP~WnE~f~f~v~~--~~~~L~~~V~D~d-~~~dd~ 86 (167)
T 2cjs_A 14 SLLCVGVKKAKFDG-AQEKFNTYVTLK---VQNVESTTIAVRGSQPSWEQDFMFEINR--LDLGLTVEVWNKG-LIWDTM 86 (167)
T ss_dssp CEEEEEEEEEECSS-CGGGCEEEEEEE---ETTEEEECCCEESSSCEEEEEEEEECCC--TTSEEEEEEEECC-SSCCEE
T ss_pred EEEEEEEEEEECCC-CCCCCCeEEEEE---ecceEEEEecCCCCCCCCCCEEEEEeeC--CCCEEEEEEEECC-CCCCce
Confidence 68999999998774 456667888888 3345677775 69999999999998873 4568999999999 7655 5
Q ss_pred cceEEEEEeeEEeec
Q 000133 2057 FGKVTIQIDRVVMLG 2071 (2100)
Q Consensus 2057 ~~~~~~~~~~~~~~~ 2071 (2100)
+|+++|.+..+...+
T Consensus 87 iG~~~i~L~~l~~~~ 101 (167)
T 2cjs_A 87 VGTVWIPLRTIRQSN 101 (167)
T ss_dssp EEEEEEEGGGSCBCS
T ss_pred EEEEEEEHHHhcccC
Confidence 699999999987655
No 107
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.16 E-value=0.0058 Score=86.12 Aligned_cols=341 Identities=8% Similarity=0.027 Sum_probs=182.0
Q ss_pred HHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhcc-----CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHH
Q 000133 457 QQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILE-----SGSAKAKEDSASILRNLCNHSEDIRACVESADAVPAL 531 (2100)
Q Consensus 457 ~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~-----~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~L 531 (2100)
.++..++.+|..+....++.- ...-...++..++++. ..++.++..++..+..++.. +..+..+.....++.+
T Consensus 261 ~vk~~~~~~l~~l~~~~~~~f-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~-~~~~~~~~~~~~l~~l 338 (960)
T 1wa5_C 261 KVKSSIQELVQLYTTRYEDVF-GPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRI-PKYFEIFNNESAMNNI 338 (960)
T ss_dssp HHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTS-HHHHGGGCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCc-HhHHHHHcCchHHHHH
Confidence 356667777777664333211 1111123444444443 33678888888888888753 3333222111233333
Q ss_pred H-----HHhh-----------------------cCChhHHHHHHHHHHHHhcCCCCCcHHHHHHH----hh------cCC
Q 000133 532 L-----WLLK-----------------------NGSANGKEIAAKTLNHLIHKSDTATISQLTAL----LT------SDL 573 (2100)
Q Consensus 532 v-----~lL~-----------------------~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~l----L~------~~~ 573 (2100)
+ ..+. +.....+..|...|..++..-....++.++.. +. +.+
T Consensus 339 i~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~ 418 (960)
T 1wa5_C 339 TEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKN 418 (960)
T ss_dssp HHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----C
T ss_pred HHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchh
Confidence 3 2221 01124567788888888876544455555544 44 456
Q ss_pred cchHHHHHHHHHHHHhccC-chhHHHHhhhccchHH----HHHHHhcCC---CHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 000133 574 PESKVYVLDALKSMLSVVS-FSDILREGSAANDAVE----TMIKILSST---KEETQAKSASALAGIFETRKDLRESSIA 645 (2100)
Q Consensus 574 ~~~~~~a~~aL~~l~~~~~-~~~~~~~~i~~~~~i~----~Lv~lL~s~---~~~~~~~Aa~aL~~L~~~~~~~~~~~~~ 645 (2100)
+..|+.|..+++.++.... ...............+ .++..+.++ ++.+|..|+|+++.++..-+ .. .-
T Consensus 419 w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~---~~-~l 494 (960)
T 1wa5_C 419 WKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT---KA-QL 494 (960)
T ss_dssp HHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC---HH-HH
T ss_pred HHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC---HH-HH
Confidence 6788999999998864211 0000000000001122 234445666 89999999999999986421 11 23
Q ss_pred cCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc-------h--hHHHHHHhCCChHHHHHHhCCCC---HH--HHHHHH
Q 000133 646 VKTLWSVMKLLDVGSECILVEASRCLAAIFLSVR-------E--NREVAAVARDALSPLVVLAGSPV---LE--VAEQAT 711 (2100)
Q Consensus 646 ~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~-------~--~~~~~~~~~~~l~~Lv~ll~~~~---~e--vr~~aa 711 (2100)
..+++.++..+.+.+..++..|+.++.+++.... + .......-...++.|..++.... +. ..+.+.
T Consensus 495 ~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~ 574 (960)
T 1wa5_C 495 IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLM 574 (960)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHH
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHH
Confidence 3468888888888889999999999999976311 1 11110001123444445555531 11 336677
Q ss_pred HHHHHHhcC-cHHHHHHHHcCcHHHHHHHHcc----CCh-hHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhh
Q 000133 712 CALANLILD-SEVSEKAIAEEIILPATRVLCE----GTI-SGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFL 785 (2100)
Q Consensus 712 ~aL~~L~~~-~~~~~~~v~~~~v~~L~~ll~~----~~~-~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l 785 (2100)
.+|..++.. .+.... ....+++.|...+.. .++ ..+.....++..+...... ..+.. .....++.+...+
T Consensus 575 ~al~~vv~~~~~~~~p-~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~-~~~~~--~~~~~~p~~~~iL 650 (960)
T 1wa5_C 575 RSIFRVLQTSEDSIQP-LFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQR-QNLPL--LVDSMMPTFLTVF 650 (960)
T ss_dssp HHHHHHHHHHTTTTGG-GHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCG-GGHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCc-chHHH--HHHHHHHHHHHHH
Confidence 778777521 111111 122344455444433 333 3566677788777765221 11222 2244556566666
Q ss_pred hhcccccchHhHHHHHHHHHHcC
Q 000133 786 ESASGSVATSEALDALAILSRSG 808 (2100)
Q Consensus 786 ~s~~~~v~~~~al~~L~~L~~~~ 808 (2100)
.....+.. +.++.++..+++..
T Consensus 651 ~~~~~~~~-~~~~~i~~~l~~~~ 672 (960)
T 1wa5_C 651 SEDIQEFI-PYVFQIIAFVVEQS 672 (960)
T ss_dssp HTTCTTTH-HHHHHHHHHHHHHC
T ss_pred HhhhHhhH-HHHHHHHHHHHHhc
Confidence 54445555 77888888887665
No 108
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.15 E-value=0.005 Score=86.83 Aligned_cols=333 Identities=10% Similarity=0.083 Sum_probs=185.6
Q ss_pred HHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhC-----CCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHH
Q 000133 415 EVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLG-----LSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPL 489 (2100)
Q Consensus 415 ~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~-----s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~L 489 (2100)
.++.+++.+|..+....++.-.... ...++..+.++. ...+.+...+...+..++. .+..+..+...+.++.+
T Consensus 261 ~vk~~~~~~l~~l~~~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~-~~~~~~~~~~~~~l~~l 338 (960)
T 1wa5_C 261 KVKSSIQELVQLYTTRYEDVFGPMI-NEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTR-IPKYFEIFNNESAMNNI 338 (960)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHT-SHHHHGGGCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhC-cHhHHHHHcCchHHHHH
Confidence 5678888888887765433111111 123444455553 3456778888888888764 22221111001123333
Q ss_pred H-----Hhcc-----------------------CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhh-----
Q 000133 490 V-----QILE-----------------------SGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLK----- 536 (2100)
Q Consensus 490 v-----~lL~-----------------------~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~----- 536 (2100)
+ ..+. +.....|..|...|..++..-+ ..+. ...++.+-+.+.
T Consensus 339 i~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~---~~v~-~~~l~~i~~~l~~~~~~ 414 (960)
T 1wa5_C 339 TEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE---VLVT-NIFLAHMKGFVDQYMSD 414 (960)
T ss_dssp HHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH---HHHH-HHHHHHHHHHHHHHHC-
T ss_pred HHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc---hhHH-HHHHHHHHHHHHHhccC
Confidence 3 2221 0112356677778888876432 1111 112344444455
Q ss_pred -cCChhHHHHHHHHHHHHhcCCC----C-C------cHHH-----HHHHhhcC---CcchHHHHHHHHHHHHhccCchhH
Q 000133 537 -NGSANGKEIAAKTLNHLIHKSD----T-A------TISQ-----LTALLTSD---LPESKVYVLDALKSMLSVVSFSDI 596 (2100)
Q Consensus 537 -~~~~~~~~~Aa~aL~~L~~~~~----~-~------~i~~-----L~~lL~~~---~~~~~~~a~~aL~~l~~~~~~~~~ 596 (2100)
+.+|+.++.|..+++.++.... + . .+.+ ++..+.+. ++-+|..+..+++.++.... ++.
T Consensus 415 ~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~-~~~ 493 (960)
T 1wa5_C 415 PSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT-KAQ 493 (960)
T ss_dssp ---CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC-HHH
T ss_pred cchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC-HHH
Confidence 5678899999999999975321 1 1 2322 23345666 77899999999999987642 232
Q ss_pred HHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCh-------hh-HHH--HHhcCchHHHHHhhcCCC---HH-
Q 000133 597 LREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRK-------DL-RES--SIAVKTLWSVMKLLDVGS---EC- 662 (2100)
Q Consensus 597 ~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~-------~~-~~~--~~~~g~v~~Lv~lL~~~~---~~- 662 (2100)
. ...++.++..|.+++..++..|+++|.+++.... +. .+. ......++.|..++...+ ..
T Consensus 494 l------~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~ 567 (960)
T 1wa5_C 494 L------IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKL 567 (960)
T ss_dssp H------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHH
T ss_pred H------HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcc
Confidence 2 2237888888888899999999999999987311 10 111 112235666667775531 11
Q ss_pred -HHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHh----C-CCCHHHHHHHHHHHHHHhcC-cHHHHHHHHcCcHHH
Q 000133 663 -ILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLA----G-SPVLEVAEQATCALANLILD-SEVSEKAIAEEIILP 735 (2100)
Q Consensus 663 -v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll----~-~~~~evr~~aa~aL~~L~~~-~~~~~~~v~~~~v~~ 735 (2100)
....+..+|..++....+.-. ..-...++.|...+ + ..++..+.....+++.++.. .+.....+...++|.
T Consensus 568 ~~~e~l~~al~~vv~~~~~~~~--p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~ 645 (960)
T 1wa5_C 568 AENEFLMRSIFRVLQTSEDSIQ--PLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPT 645 (960)
T ss_dssp TSCHHHHHHHHHHHHHHTTTTG--GGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 123444444444321111000 00011223333322 2 24667777888888888743 333344456788899
Q ss_pred HHHHHccCChhHHHHHHHHHHHHHhcC
Q 000133 736 ATRVLCEGTISGKTLAAAAIARLLHSR 762 (2100)
Q Consensus 736 L~~ll~~~~~~~~~~Aa~aL~~l~~~~ 762 (2100)
+...+..+..+....+...+..++...
T Consensus 646 ~~~iL~~~~~~~~~~~~~i~~~l~~~~ 672 (960)
T 1wa5_C 646 FLTVFSEDIQEFIPYVFQIIAFVVEQS 672 (960)
T ss_dssp HHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhhHhhHHHHHHHHHHHHHhc
Confidence 999998877777777777777777543
No 109
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=98.15 E-value=8.7e-07 Score=115.91 Aligned_cols=117 Identities=15% Similarity=0.334 Sum_probs=93.1
Q ss_pred cCCCceeeeeccchhhh--hhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCC
Q 000133 1977 LPGTLVVIIKRGNNMKQ--SVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGK 2054 (2100)
Q Consensus 1977 i~~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2054 (2100)
-.|.|+|+|++..++.. ..|.+.-|+.+.+|+ ...+|+|++++.||.|+|.|.|.+. ++.++.|.++|+|++.||+
T Consensus 385 ~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~-~~~~T~~~~~t~nP~w~e~f~f~~~-~~~~~~l~~~v~d~d~~~~ 462 (510)
T 3jzy_A 385 GIGRLMVHVIEATELKACKPNGKSNPYCEISMGS-QSYTTRTIQDTLNPKWNFNCQFFIK-DLYQDVLCLTLFDRDQFSP 462 (510)
T ss_dssp -CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETT-EEEECCCCSSCSSCEEEEEEEEEES-CTTTCEEEEEEEECCSSSS
T ss_pred CCceEEEEeceeecCCCCCCCCCCCeEEEEEECC-eeccCCccCCCCCCccCceEEEEec-CCCCCEEEEEEEeCCCCCC
Confidence 35789999999999953 466688899999964 6788999999999999999999886 6677899999999999997
Q ss_pred cc-cceEEEEEeeEEeecc----cccceeecCCCCCCCCcceEEEEEe
Q 000133 2055 SS-FGKVTIQIDRVVMLGA----VAGEYTLLPESKSGPSRNLEIEFLW 2097 (2100)
Q Consensus 2055 ~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 2097 (2100)
+. +|+|+|++..+...+. +...|.|.+. ..|... +.+++++
T Consensus 463 ~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~-~~G~i~-l~~~l~l 508 (510)
T 3jzy_A 463 DDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEV-PTGEVW-VRFDLQL 508 (510)
T ss_dssp CCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSS-SSCEEE-EEEEEEE
T ss_pred CCceEEEEEEHHHhccccCCCCceeeeecCCCC-CCceEE-EEEEEEE
Confidence 65 5999999999876544 5555777543 356544 6666665
No 110
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*
Probab=98.14 E-value=8.6e-07 Score=96.05 Aligned_cols=89 Identities=26% Similarity=0.444 Sum_probs=72.6
Q ss_pred CCCceeeeeccchhhhh--hCCCcceEEEecCCC----CCccccccccCCCccccccceeccccCC-CCCeEEEEeecCC
Q 000133 1978 PGTLVVIIKRGNNMKQS--VGNPSVYCKLTLGNT----PPRQTKIVSTGPNPEWEESFAWSFEIPP-KGQKLHISCKNKS 2050 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 2050 (2100)
.|.|.|+|++..++... .|.+.-|+.+.+++. ..++|+|++++.||+|+|.|.|.+..+- .+..|.|+|+|++
T Consensus 24 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d 103 (159)
T 1tjx_A 24 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYD 103 (159)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECC
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEECC
Confidence 58899999999999743 455778999888743 3578999999999999999998865322 2458999999999
Q ss_pred ccCCc-ccceEEEEEee
Q 000133 2051 KMGKS-SFGKVTIQIDR 2066 (2100)
Q Consensus 2051 ~~~~~-~~~~~~~~~~~ 2066 (2100)
.||++ .+|++.|.++.
T Consensus 104 ~~~~~~~iG~~~i~l~~ 120 (159)
T 1tjx_A 104 KIGKNDAIGKVFVGYNS 120 (159)
T ss_dssp SSSCCEEEEEEEEETTC
T ss_pred CCCCCceEEEEEECCCC
Confidence 99865 55999999985
No 111
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.12 E-value=0.0014 Score=92.68 Aligned_cols=587 Identities=11% Similarity=0.024 Sum_probs=290.9
Q ss_pred HhcCCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhccCCCCcccccchhccCC
Q 000133 63 LRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLK-SSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGV 141 (2100)
Q Consensus 63 L~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~ 141 (2100)
+.+++.+.|.+|-..|..+-+.+ ++++.+..+|. +.+.++|..|+..|.+.....-. . -..-...+.
T Consensus 16 ~~~~d~~~r~~A~~~L~~~~~~p---------~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~-~--l~~~~~~~i 83 (971)
T 2x1g_F 16 FYRSNSQNQAITHEWLTDAEASP---------QAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWH-E--VPPENREEL 83 (971)
T ss_dssp HHTSTTTC----CHHHHHTTTST---------HHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGG-G--CCGGGHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHcCH---------HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHh-h--CCHHHHHHH
Confidence 33455567777777777765444 34556666764 45788899999999986652110 0 000011222
Q ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhccCC-hhhHHHHHhcCCHHHHHHhHccC------CHHHHHHHHHHHHHHhh
Q 000133 142 VPVLWEQLKNGLKSGNVVDNLLTGALRNLSTST-EGFWAATVQAGGIDILVKLLTLG------QSSTQAHVCFLLACMME 214 (2100)
Q Consensus 142 vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~-~~~~~~i~~~g~v~~Lv~lL~s~------~~~v~~~a~~~L~~L~~ 214 (2100)
-..+++.+.......+.++..+..++..++... + .|. +.++.++.+++++ ++.....+..+|..+..
T Consensus 84 r~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp-----~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~E 157 (971)
T 2x1g_F 84 KQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWP-----GAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPE 157 (971)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C-----------HHHHHHHHTC----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-ccc-----HHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHH
Confidence 233555554432234567877888887776432 2 565 4577889888875 56678888888877763
Q ss_pred c----Ccc-hh----hHHhh--hchHHHHHHHhcCCCC-------HHHHHHHHHHHHHhhc--CChHhHHHHHhCCChHH
Q 000133 215 E----DVS-VC----SRVLA--ADATKQLLKLLGSGNE-------ASVRAEAAGALKSLSD--HCKDARREIAGSNGIPA 274 (2100)
Q Consensus 215 ~----~~~-~~----~~i~~--~g~i~~Lv~lL~~~~~-------~~v~~~Aa~aL~~Ls~--~~~~~~~~i~~~g~i~~ 274 (2100)
. .+. .+ ..+.. ...++.+.+++....+ .+++..+..++..... .-+.. ....-++.
T Consensus 158 Ei~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~----~~~~ll~~ 233 (971)
T 2x1g_F 158 EAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE----GCVTITAV 233 (971)
T ss_dssp HHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG----GHHHHHHH
T ss_pred HHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc----ccccHHHH
Confidence 2 111 11 11111 1223333344432111 1577777777765443 12211 11122333
Q ss_pred HHHhhc-----C---CCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhcc
Q 000133 275 MINATI-----A---PSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDS 346 (2100)
Q Consensus 275 Lv~ll~-----~---~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~ 346 (2100)
++. +. . .+..+. ....+.+++.++.++..+..... + .+....+.
T Consensus 234 l~~-L~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~l~~i~~~~~------------~------~~~~~~~~-------- 285 (971)
T 2x1g_F 234 LLE-VVHKCYWPCIHAGDGCM-TADENELAESCLKTMVNIIIQPD------------C------HNYPKTAF-------- 285 (971)
T ss_dssp HHH-HHHHHHSSSCC---CCC-CHHHHHHHHHHHHHHHHHHHCSG------------G------GGCHHHHH--------
T ss_pred HHh-hhhhhcccccccccccc-CcCCcHHHHHHHHHHHHHHcCcc------------c------cccHHHHH--------
Confidence 443 20 0 000000 01235677777777776553210 0 00000000
Q ss_pred ccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCC---HHHHHHHHHH
Q 000133 347 KAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMAT---NEVQEELVRA 423 (2100)
Q Consensus 347 ~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~---~~v~~~A~~a 423 (2100)
.+.+.+..+ .+.+...+...+ .+.....++.
T Consensus 286 -----------~l~~~~~~~-----------------------------------~~~~~~~~~~~d~~~~~~~~~l~~l 319 (971)
T 2x1g_F 286 -----------VLIKMFLDS-----------------------------------LSEITKTEWKRENDNEDIIVHIYML 319 (971)
T ss_dssp -----------HHHHHHHHH-----------------------------------HHHHHHHHSSSSCSCSHHHHHHHHH
T ss_pred -----------HHHHHHHHh-----------------------------------HHHHHHHHhcccccchHHHHHHHHH
Confidence 000000000 000111112223 2455555555
Q ss_pred HHHhhccCccc------------hHHHHhCCcHHHHHHhhCC-----CCHHHHHHHHHHHHHhccCC---------cccH
Q 000133 424 LLKLCNNEGSL------------WRALQGREGIQLLISLLGL-----SSEQQQECSVALLCLLSNEN---------DDSK 477 (2100)
Q Consensus 424 L~~L~~~~~~~------------~~~i~~~g~i~~Lv~lL~s-----~~~~v~~~A~~aL~nLs~~~---------~~~~ 477 (2100)
+..++...... ...+. ..++.|+.+... .++++...++..+..++... ....
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~ 397 (971)
T 2x1g_F 320 FVSSVERHSTLLLSGITSADPELSILVH--RIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCW 397 (971)
T ss_dssp HHHHHHHTHHHHHHHHHTCCHHHHHHHH--HHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHH
T ss_pred HHHHHHHHHHHHHHHhccCcccccHHHH--HHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHH
Confidence 55554332111 01111 234555555533 46677778887777665311 1111
Q ss_pred HHH--HhcCChHHHHHhccCC--------CH-------HHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhc---
Q 000133 478 WAI--TAAGGIPPLVQILESG--------SA-------KAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKN--- 537 (2100)
Q Consensus 478 ~~i--~~~g~i~~Lv~lL~~~--------~~-------~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~--- 537 (2100)
..+ .=...++.++..+.-+ ++ ..|..+..+|..++...++. +.. -..+.+-..+.+
T Consensus 398 ~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~---~l~-~~~~~l~~~l~~~~~ 473 (971)
T 2x1g_F 398 EYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDY---ILE-ILAAMLDEAIADLQR 473 (971)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTH---HHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHH---HHH-HHHHHHHHHHHhccC
Confidence 111 1112344444444211 11 34556677777776543211 000 012333333433
Q ss_pred --CChhHHHHHHHHHHHHhcCCC---CCcHHHHHHHh---h--cCCcchHHHHHHHHHHHHhccC-chhHHHHhhhccch
Q 000133 538 --GSANGKEIAAKTLNHLIHKSD---TATISQLTALL---T--SDLPESKVYVLDALKSMLSVVS-FSDILREGSAANDA 606 (2100)
Q Consensus 538 --~~~~~~~~Aa~aL~~L~~~~~---~~~i~~L~~lL---~--~~~~~~~~~a~~aL~~l~~~~~-~~~~~~~~i~~~~~ 606 (2100)
.+|+.++.+..+++.++.... ...++.++.++ . +.++.+|..+..+++.++.... +++... ..
T Consensus 474 ~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~------~v 547 (971)
T 2x1g_F 474 HPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP------PA 547 (971)
T ss_dssp CTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH------HH
T ss_pred CCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH------HH
Confidence 578899999999999976433 24566666654 2 3477899999999999887433 222112 23
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcC--CCHHHHHHHHHHHHHHhcCCchhHHH
Q 000133 607 VETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDV--GSECILVEASRCLAAIFLSVRENREV 684 (2100)
Q Consensus 607 i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~--~~~~v~~~aa~aL~~L~~~~~~~~~~ 684 (2100)
++.|+..| + +.++..|+.++.+++........ ..-...+..|..++.. -+...+..+..+++.++...+.....
T Consensus 548 l~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~-p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~ 623 (971)
T 2x1g_F 548 INLLVRGL-N--SSMSAQATLGLKELCRDCQLQLK-PYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIP 623 (971)
T ss_dssp HHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHH
T ss_pred HHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHH
Confidence 67777777 3 77999999999999975433221 2233456666677765 35678888899999887654322211
Q ss_pred HHHhCCChHHHHH----HhCCC--CHHHHHHHHHHHHHHh---c--Cc-----------HHHHHHHHcCcHHHHHHHHcc
Q 000133 685 AAVARDALSPLVV----LAGSP--VLEVAEQATCALANLI---L--DS-----------EVSEKAIAEEIILPATRVLCE 742 (2100)
Q Consensus 685 ~~~~~~~l~~Lv~----ll~~~--~~evr~~aa~aL~~L~---~--~~-----------~~~~~~v~~~~v~~L~~ll~~ 742 (2100)
.. -...++++++ ++... +++.+.....++..|. . +. ......+...+++.+..++..
T Consensus 624 ~~-~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~ 702 (971)
T 2x1g_F 624 KY-LDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEM 702 (971)
T ss_dssp HH-HHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHh
Confidence 11 1223444443 33333 4444444444554442 1 11 011123456788888888875
Q ss_pred C--ChhHHHHHHHHHHHHHhcC
Q 000133 743 G--TISGKTLAAAAIARLLHSR 762 (2100)
Q Consensus 743 ~--~~~~~~~Aa~aL~~l~~~~ 762 (2100)
. +..+.+.+.+++.++....
T Consensus 703 ~~~~~~v~e~~~~~~~~~~~~~ 724 (971)
T 2x1g_F 703 WVEEIDVLEAACSAMKHAITNL 724 (971)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHhh
Confidence 4 4468888999998877543
No 112
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.09 E-value=0.011 Score=83.43 Aligned_cols=218 Identities=13% Similarity=0.088 Sum_probs=130.3
Q ss_pred hcCChhHHHHHHHHHHHHhcCCC---CCcHHHHHHHh---hcCCcchHHHHHHHHHHHHhcc-CchhHHHHhhhccchHH
Q 000133 536 KNGSANGKEIAAKTLNHLIHKSD---TATISQLTALL---TSDLPESKVYVLDALKSMLSVV-SFSDILREGSAANDAVE 608 (2100)
Q Consensus 536 ~~~~~~~~~~Aa~aL~~L~~~~~---~~~i~~L~~lL---~~~~~~~~~~a~~aL~~l~~~~-~~~~~~~~~i~~~~~i~ 608 (2100)
.+.+|..++.+..+++.++.... ...++.++..+ .++++.++..+..+++.++... .+++. -...++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~------l~~vl~ 532 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVM------INSVLP 532 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHH------HTTTHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHH------HHHHHH
Confidence 45678999999999999987543 24566666654 3356778899999999887642 22221 123477
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcC--CCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 000133 609 TMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDV--GSECILVEASRCLAAIFLSVRENREVAA 686 (2100)
Q Consensus 609 ~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~--~~~~v~~~aa~aL~~L~~~~~~~~~~~~ 686 (2100)
.++..|.+ +.++..|+.+|.+++...++... ..-...+..|..++.. -+...+..+..+++.++...+..... -
T Consensus 533 ~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~-p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~-~ 608 (963)
T 2x19_B 533 LVLHALGN--PELSVSSVSTLKKICRECKYDLP-PYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL-K 608 (963)
T ss_dssp HHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCT-TTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH-H
T ss_pred HHHHHhCC--chHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH-H
Confidence 88887754 78999999999999965332110 1112344555555654 35678888899999987654311111 1
Q ss_pred HhCCChHHHHHHh----CC-CCHHHHHHHHHH---HHHHh--cC---c-H----------------HHHHHHHcCcHHHH
Q 000133 687 VARDALSPLVVLA----GS-PVLEVAEQATCA---LANLI--LD---S-E----------------VSEKAIAEEIILPA 736 (2100)
Q Consensus 687 ~~~~~l~~Lv~ll----~~-~~~evr~~aa~a---L~~L~--~~---~-~----------------~~~~~v~~~~v~~L 736 (2100)
.-...++++.+.+ .. .+++.+...... |+.+. .+ + + .....+...+++.+
T Consensus 609 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (963)
T 2x19_B 609 NLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLI 688 (963)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHH
Confidence 1123444444433 22 366666544333 43333 11 1 0 11122345677777
Q ss_pred HHHHccC--ChhHHHHHHHHHHHHHhcCc
Q 000133 737 TRVLCEG--TISGKTLAAAAIARLLHSRK 763 (2100)
Q Consensus 737 ~~ll~~~--~~~~~~~Aa~aL~~l~~~~~ 763 (2100)
.+++... +..+.+.+..++.++....+
T Consensus 689 ~~~l~~~~~~~~v~e~~~~~l~~~~~~~~ 717 (963)
T 2x19_B 689 QKVLSKWLNDAQVVEAVCAIFEKSVKTLL 717 (963)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhccCchHHHHHHHHHHHHHHHhhc
Confidence 7776543 34577888888888775444
No 113
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A
Probab=98.06 E-value=1.3e-06 Score=115.11 Aligned_cols=105 Identities=15% Similarity=0.353 Sum_probs=89.4
Q ss_pred cCCCceeeeeccchhhh-----hhCCCcceEEEecCC--CCCccccccccCCCccccccceeccccCCCCCeEEEEeecC
Q 000133 1977 LPGTLVVIIKRGNNMKQ-----SVGNPSVYCKLTLGN--TPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNK 2049 (2100)
Q Consensus 1977 i~~~~~~~~~r~~~~~~-----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 (2100)
-.|.|.|+|++..++.. ..|...-++++.++. ...++|||++++.||+|+|.|.|.+. .+..+.|+|+|+|+
T Consensus 16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~-~~~~~~L~~~V~D~ 94 (749)
T 1cjy_A 16 YSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILD-PNQENVLEITLMDA 94 (749)
T ss_dssp CCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEEC-TTSCCBCEEEEEEC
T ss_pred CccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEec-CCCCCEEEEEEEEC
Confidence 35789999999999865 567788899999985 46788999999999999999999988 45678999999999
Q ss_pred CccCCcccceEEEEEeeEEeecccccceeecCC
Q 000133 2050 SKMGKSSFGKVTIQIDRVVMLGAVAGEYTLLPE 2082 (2100)
Q Consensus 2050 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2082 (2100)
+.||.+.+|+|+|.+.++...+.....|.|.+.
T Consensus 95 D~~~ddfIG~v~I~L~~L~~g~~~~~w~~L~~~ 127 (749)
T 1cjy_A 95 NYVMDETLGTATFTVSSMKVGEKKEVPFIFNQV 127 (749)
T ss_dssp CSSSCEEEEEECCBSTTSCTTCCCCEEEEETTT
T ss_pred CCCCCceeEEEEEEHHHcCCCCceEEEEecCCC
Confidence 999966789999999998666667778888554
No 114
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.03 E-value=2.6e-05 Score=90.92 Aligned_cols=179 Identities=12% Similarity=0.130 Sum_probs=138.1
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhC-CCCHHHHHHHHHHHHHhccCCcccHHHHHhc
Q 000133 405 LVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLG-LSSEQQQECSVALLCLLSNENDDSKWAITAA 483 (2100)
Q Consensus 405 Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~-s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~ 483 (2100)
+.+.+.+.++..|..|+..|..+...++.....- -...++.|...+. +++..++..|+.+|..|+..-.. ...-+-.
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~-~~~~~~~ 97 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAK-RFSNYAS 97 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGG-GGHHHHH
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhh-hHHHHHH
Confidence 6677889999999999999999987633321000 0134678888884 99999999999999999853222 1222334
Q ss_pred CChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC----
Q 000133 484 GGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT---- 559 (2100)
Q Consensus 484 g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~---- 559 (2100)
..+|.|+..+++.++.+|+.|..+|.+++...+ .. ..++.|...+++.++.+|..+...|..+.....+
T Consensus 98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~~------~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~ 170 (242)
T 2qk2_A 98 ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-LE------AQQESIVESLSNKNPSVKSETALFIARALTRTQPTALN 170 (242)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-HH------HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-HH------HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCcc
Confidence 478999999999999999999999999987432 21 2578899999999999999999999996544321
Q ss_pred -----CcHHHHHHHhhcCCcchHHHHHHHHHHHHhccC
Q 000133 560 -----ATISQLTALLTSDLPESKVYVLDALKSMLSVVS 592 (2100)
Q Consensus 560 -----~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~ 592 (2100)
..+|.|+..+.+..+++|..|.++++.+....+
T Consensus 171 ~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 171 KKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence 467788889999999999999999998776543
No 115
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.01 E-value=4.8e-05 Score=91.98 Aligned_cols=268 Identities=14% Similarity=0.071 Sum_probs=158.8
Q ss_pred hHHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHhhcChHHHHHHHhcCCchHHHHHHHHHHHhcccHHHHHHHHh
Q 000133 1318 VDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAA 1397 (2100)
Q Consensus 1318 l~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~~~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~ 1397 (2100)
-...++++.+ +|..+++-.--.+..++..++- ..-+++.|..=++++++-+|..|+++|.++...+-..+
T Consensus 70 f~~v~kl~~s-~d~~lKrLvYLyl~~~~~~~~e-----~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~~~---- 139 (355)
T 3tjz_B 70 FFAMTKLFQS-NDPTLRRMCYLTIKEMSCIAED-----VIIVTSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQA---- 139 (355)
T ss_dssp HHHHHGGGGC-CCHHHHHHHHHHHHHHTTTSSC-----GGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTHHH----
T ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHhCCCHHH-----HHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHHHH----
Confidence 3445566666 4777887777777776665321 11356778888999999999999999999986543332
Q ss_pred cCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCchhhHHHHhcCcHHHHHHHhccCChhHHHHHHHHHHHHHhccCCccc
Q 000133 1398 HGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKG 1477 (2100)
Q Consensus 1398 ~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k~~i~~~~~i~~lv~~L~~~~~~~~~~aa~lL~~Ls~~~~~~~~ 1477 (2100)
+.+.+-..+.+.++.||++|+.+..++....|+.. + +++..+.+++.+....+...+..+++++......
T Consensus 140 --l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v----~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~--- 209 (355)
T 3tjz_B 140 --IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV----K-RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL--- 209 (355)
T ss_dssp --HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH----H-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH---
T ss_pred --HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH----H-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH---
Confidence 46778888999999999999999999988776532 2 5899999999888877777777788777764321
Q ss_pred ccccCchHHHHHHhccCC-CCchhHhHHHHHHHHhhcCCCcccccccccCCChHhhhhccCCCCHHHHHHHHHHHHHhhc
Q 000133 1478 PSAAKVVEPLFLLLTRSE-FGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLL 1556 (2100)
Q Consensus 1478 ~~~~~~v~~Ll~ll~~~~-~~~~~~~~A~~~L~nL~~~~~~~~~~~~~~~~~l~~Lv~~L~~~~~~vq~~a~~aL~~l~~ 1556 (2100)
.+..++.-+.... .+++.+..-++.+..+...+... ....+++.|..+|+..++.|..++++++..+..
T Consensus 210 -----a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~ 279 (355)
T 3tjz_B 210 -----AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG 279 (355)
T ss_dssp -----HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHHTC---
T ss_pred -----HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC
Confidence 2444455444321 23666665455444433221000 234567888899999999999999999999855
Q ss_pred cccccccccccCchHHHHHHhccCCHHHHHHHHHHHHHhhcCChhHHHhccChHHHHHHhcccCC
Q 000133 1557 EEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVTELSKIILQADP 1621 (2100)
Q Consensus 1557 ~~~~~~~l~~~g~i~~Lv~lL~s~~~~vr~~Al~AL~~Ls~~~~n~l~~~G~i~~Ll~lL~~~~~ 1621 (2100)
.+. ..+ ..++.+|..++.+.++++|..|++.|..+....|..+.. .-..+++++.+++.
T Consensus 280 ~~~--~~~--~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~--~n~~ie~li~d~n~ 338 (355)
T 3tjz_B 280 CSA--KEL--APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTA--CNLDLENLVTDANR 338 (355)
T ss_dssp ------------CCCTHHHHHHSSSSSSHHHHHHCC-----------------------------
T ss_pred CCH--HHH--HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHH--HHHHHHHHccCCcH
Confidence 211 111 245678888999999999999999999999888775432 23456666766554
No 116
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.98 E-value=8.9e-07 Score=92.49 Aligned_cols=120 Identities=17% Similarity=0.149 Sum_probs=95.0
Q ss_pred CChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHH
Q 000133 484 GGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATIS 563 (2100)
Q Consensus 484 g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~ 563 (2100)
..++.|+.+|.++++.+|..|+++|.++... .++.|+.+|++.++.++..|+++|+++. ++..++
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~---~~~a~~ 76 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGNFQ---DERAVE 76 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCSCHHHHHHHHHHHGGGC---SHHHHH
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCCCHHHHHHHHHHHHhcC---CHHHHH
Confidence 4678899999999999999999988876421 3689999999999999999999998884 356899
Q ss_pred HHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000133 564 QLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGI 632 (2100)
Q Consensus 564 ~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L 632 (2100)
.|+.++.+.++.+|..+.++|+.+. +..+++.|+.+++++++.+|..|+++|.+|
T Consensus 77 ~L~~~L~d~~~~VR~~A~~aL~~~~--------------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 77 PLIKLLEDDSGFVRSGAARSLEQIG--------------GERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp HHHHHHHHCCTHHHHHHHHHHHHHC--------------SHHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhC--------------cHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 9999999999999999999999653 234589999999999999999999998653
No 117
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.98 E-value=0.00021 Score=86.30 Aligned_cols=280 Identities=13% Similarity=0.024 Sum_probs=164.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHH
Q 000133 402 KRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAIT 481 (2100)
Q Consensus 402 i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~ 481 (2100)
...++.++.++|...++-.--.+.+++...++ .+ =++..|.+=++++++-++..|..+|+++.. ++..+.
T Consensus 70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e---~i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~~~-- 139 (355)
T 3tjz_B 70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED---VI---IVTSSLTKDMTGKEDSYRGPAVRALCQITD--STMLQA-- 139 (355)
T ss_dssp HHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC---GG---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTHHH--
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH---HH---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHHHH--
Confidence 44567889999999999998888888776332 11 246778888889999999999999999973 444333
Q ss_pred hcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCc
Q 000133 482 AAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTAT 561 (2100)
Q Consensus 482 ~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~ 561 (2100)
..+.+.+.+.+.++-+|..|+.+..+|....++.- .+.+..+-+++.+.++.++..|..+|..+..+ +..+
T Consensus 140 ---l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~-d~~a 210 (355)
T 3tjz_B 140 ---IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAASSDNIMVQYHALGLLYHVRKN-DRLA 210 (355)
T ss_dssp ---HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT-CHHH
T ss_pred ---HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh-chHH
Confidence 35668888899999999999999999998766542 36889999999999999999999999999764 3446
Q ss_pred HHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHH
Q 000133 562 ISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRE 641 (2100)
Q Consensus 562 i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~ 641 (2100)
+..|+.-+....-.....-...+..+......++ .-.....++.+..+|++.++.+.+.|+.++..+...+..
T Consensus 211 ~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~----~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~--- 283 (355)
T 3tjz_B 211 VSKMISKFTRHGLKSPFAYCMMIRVASRQLEDED----GSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK--- 283 (355)
T ss_dssp HHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------------------CCCCCSSHHHHHHHHHHHTC----------
T ss_pred HHHHHHHHhcCCCcChHHHHHHHHHHHHhccccc----hhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH---
Confidence 7777776665421111222223333333322210 001223467777788999999999999999998763222
Q ss_pred HHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHH
Q 000133 642 SSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALA 715 (2100)
Q Consensus 642 ~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~ 715 (2100)
....++.+|..++.++++.++-.|++.|..+....++. . ...-..+..++.+++..+...|..+|-
T Consensus 284 --~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~--v----~~~n~~ie~li~d~n~sI~t~Aittll 349 (355)
T 3tjz_B 284 --ELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSA--V----TACNLDLENLVTDANRSIATLAITTLL 349 (355)
T ss_dssp ------CCCTHHHHHHSSSSSSHHHHHHCC--------------------------------------------
T ss_pred --HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHH--H----HHHHHHHHHHccCCcHhHHHHHHHHhh
Confidence 12346778888898888899999999998886654321 1 234566778888888888777666653
No 118
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.97 E-value=6.5e-05 Score=87.53 Aligned_cols=177 Identities=14% Similarity=0.135 Sum_probs=136.5
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHHhcC-CC------CCcHHHHHHHhh-cCCcchHHHHHHHHHHHHhccCchhHHHHh
Q 000133 529 PALLWLLKNGSANGKEIAAKTLNHLIHK-SD------TATISQLTALLT-SDLPESKVYVLDALKSMLSVVSFSDILREG 600 (2100)
Q Consensus 529 ~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~-~~------~~~i~~L~~lL~-~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~ 600 (2100)
+.+.+.+.+.+|..|..|+..|..+... +. ...++.|..++. +.+..++..+..+++.++...... +...
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~--~~~~ 95 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKR--FSNY 95 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGG--GHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhh--HHHH
Confidence 4577888899999999999999998764 21 145666777784 888899999999999998643221 1111
Q ss_pred hhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-c
Q 000133 601 SAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSV-R 679 (2100)
Q Consensus 601 i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~-~ 679 (2100)
+ ...+|.+++.+.+.++.+|..|..+|..++.... . ...+|.+...+.+.++.++..++..|..+.... +
T Consensus 96 ~--~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~ 166 (242)
T 2qk2_A 96 A--SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-L------EAQQESIVESLSNKNPSVKSETALFIARALTRTQP 166 (242)
T ss_dssp H--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-H------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCG
T ss_pred H--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-H------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 1 2348999999999999999999999999987532 1 136888999999999999999999999965443 2
Q ss_pred hh-HHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 000133 680 EN-REVAAVARDALSPLVVLAGSPVLEVAEQATCALANLI 718 (2100)
Q Consensus 680 ~~-~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~ 718 (2100)
+. ... .. ...++.|+.++.++++++|..|..+++.+.
T Consensus 167 ~~~~~~-~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~ 204 (242)
T 2qk2_A 167 TALNKK-LL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLI 204 (242)
T ss_dssp GGCCHH-HH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred CCccHH-HH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 21 111 11 357899999999999999999999999887
No 119
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.97 E-value=0.21 Score=70.47 Aligned_cols=224 Identities=12% Similarity=0.058 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHh-cCCHHHHHHHHHHHHhhhcc--
Q 000133 8 LASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLR-SGSLAVKIQAATVLGSLCKE-- 84 (2100)
Q Consensus 8 ~~~v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~-~~~~~v~~~aa~~L~~L~~~-- 84 (2100)
...+.++++.+..+ .++..|..|-..|..+-+..+ +.+.+..+|. +.+..+|..|+.+|.+..+.
T Consensus 23 ~~~l~~~l~~l~~~-~~~~~r~~A~~~L~~~~~~p~-----------~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w 90 (963)
T 2x19_B 23 VENVEKALHQLYYD-PNIENKNLAQKWLMQAQVSPQ-----------AWHFSWQLLQPDKVPEIQYFGASALHIKISRYW 90 (963)
T ss_dssp HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHSTT-----------HHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCHH-----------HHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCH
Confidence 55677777775543 356778888888888776443 4445556664 45678999999999987632
Q ss_pred ----chhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCC--Ccch
Q 000133 85 ----NELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLK--SGNV 158 (2100)
Q Consensus 85 ----~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~--~~~~ 158 (2100)
++.|..+ +...+..+... .+++..++...+.++..+.....++. + .+.++.|+..+++... .++.
T Consensus 91 ~~l~~~~~~~i-r~~ll~~l~~~-~~~~~~ir~kl~~~la~i~~~~~p~~-----W--p~~l~~l~~~~~~~~~~~~~~~ 161 (963)
T 2x19_B 91 SDIPTDQYESL-KAQLFTQITRF-ASGSKIVLTRLCVALASLALSMMPDA-----W--PCAVADMVRLFQAEDSPVDGQG 161 (963)
T ss_dssp GGSCGGGHHHH-HHHHHHHHHHT-TTSCHHHHHHHHHHHHHHHHHHTTTT-----S--TTHHHHHHHHHCC------CHH
T ss_pred HhCCHHHHHHH-HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHhCccc-----c--chHHHHHHHHHhhhccCCCcHH
Confidence 2223323 22223333332 12457778888888888887322111 1 2567788887754100 1222
Q ss_pred HHHHHHHHHHHhccC---C--hhhHHHHHh---cCCHHHHH----HhHccCC--HHHHHHHHHHHHHHhhcCcchhhHHh
Q 000133 159 VDNLLTGALRNLSTS---T--EGFWAATVQ---AGGIDILV----KLLTLGQ--SSTQAHVCFLLACMMEEDVSVCSRVL 224 (2100)
Q Consensus 159 v~~~a~~aL~nL~~~---~--~~~~~~i~~---~g~v~~Lv----~lL~s~~--~~v~~~a~~~L~~L~~~~~~~~~~i~ 224 (2100)
....+...|..++.+ . +..++.-.. ...++.++ .++...+ ..+...+..++..... -+.. ...
T Consensus 162 ~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~--~~~ 238 (963)
T 2x19_B 162 RCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVP--LQD 238 (963)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCC--GGG
T ss_pred HHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCC--ccc
Confidence 445566667766521 0 001111101 12244444 4443332 2466777777643332 1111 112
Q ss_pred hhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcC
Q 000133 225 AADATKQLLKLLGSGNEASVRAEAAGALKSLSDH 258 (2100)
Q Consensus 225 ~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~ 258 (2100)
....++.+++.+.. .+++..|+.+|..+...
T Consensus 239 ~~~ll~~l~~~l~~---~~~~~~a~~~l~~i~~~ 269 (963)
T 2x19_B 239 CEALIQAAFAALQD---SELFDSSVEAIVNAISQ 269 (963)
T ss_dssp THHHHHHHHHHTTS---TTTHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHhCC---chHHHHHHHHHHHHHcc
Confidence 35567777777753 36889999999998864
No 120
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.94 E-value=0.00012 Score=79.81 Aligned_cols=186 Identities=15% Similarity=0.087 Sum_probs=151.4
Q ss_pred CcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 000133 442 EGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRAC 521 (2100)
Q Consensus 442 g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~ 521 (2100)
+.+..|..++.+.++.++..+..+|..+-..-+.......-...++.++.++.+.++.+--.|..+|..|-...|-....
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 46788999999999999999999999998754444444444458999999999999999999999999999876655555
Q ss_pred HHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCC-CCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHh
Q 000133 522 VESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKS-DTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREG 600 (2100)
Q Consensus 522 i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~-~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~ 600 (2100)
+.. +..+|.++++++++-.+..++..|+.+--.+ .++.+.-+..++.+.+++++..+..++-+++.....++...
T Consensus 113 y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~-- 188 (265)
T 3b2a_A 113 FLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLT-- 188 (265)
T ss_dssp HHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGG--
T ss_pred HHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHH--
Confidence 544 6789999999999999999999999994433 34667778888989999999999999998888765444222
Q ss_pred hhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 000133 601 SAANDAVETMIKILSSTKEETQAKSASALAGIFET 635 (2100)
Q Consensus 601 i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~ 635 (2100)
+.+..+-.+|++.++.+++.|..++-.+...
T Consensus 189 ----~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 189 ----LILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp ----GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred ----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 2245566789999999999999999999876
No 121
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.93 E-value=1.7e-06 Score=90.33 Aligned_cols=119 Identities=17% Similarity=0.190 Sum_probs=95.2
Q ss_pred CCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHH
Q 000133 441 REGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRA 520 (2100)
Q Consensus 441 ~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~ 520 (2100)
...++.|+.+|+++++.+|..|+++|+.+.. + .++.|+++|.++++.+|..|+++|+++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~--~----------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD--E----------AFEPLLESLSNEDWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS--T----------THHHHHHGGGCSCHHHHHHHHHHHGGGCS-------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc--h----------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------
Confidence 3678899999999999999999999987752 1 37899999999999999999999999863
Q ss_pred HHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHH
Q 000133 521 CVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALK 585 (2100)
Q Consensus 521 ~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~ 585 (2100)
...++.|+.++++.++.++..|+++|+++. ++..++.|..++.++++.+|..+..+|+
T Consensus 72 ----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~---~~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 72 ----ERAVEPLIKLLEDDSGFVRSGAARSLEQIG---GERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp ----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC---SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---cHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 125899999999999999999999999985 4678999999999999999999888876
No 122
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.91 E-value=0.001 Score=69.24 Aligned_cols=212 Identities=16% Similarity=0.116 Sum_probs=153.8
Q ss_pred CCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC---CcHHHHHHHhhcC-CcchHHHHHHHHHHHHhccCchhHHHHh
Q 000133 525 ADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT---ATISQLTALLTSD-LPESKVYVLDALKSMLSVVSFSDILREG 600 (2100)
Q Consensus 525 ~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~---~~i~~L~~lL~~~-~~~~~~~a~~aL~~l~~~~~~~~~~~~~ 600 (2100)
...+..++.+|.+.-|.++++|...+..++..-+. ..+..|+.+++.+ .-.......+++|.++.+. |+.++.
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~--Pe~v~~- 107 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK--PELVKS- 107 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC--HHHHHH-
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhC--HHHHHh-
Confidence 45778999999999999999999999999875533 2334455565543 3344456778888877654 333332
Q ss_pred hhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCch
Q 000133 601 SAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRE 680 (2100)
Q Consensus 601 i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~ 680 (2100)
.+|.+..-.+-+++.++.+-..+|..+++.+|.. ..+++.-+..++.+.+..-+..|+..++.+....
T Consensus 108 -----vVp~lfanyrigd~kikIn~~yaLeeIaranP~l-----~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~-- 175 (253)
T 2db0_A 108 -----MIPVLFANYRIGDEKTKINVSYALEEIAKANPML-----MASIVRDFMSMLSSKNREDKLTALNFIEAMGENS-- 175 (253)
T ss_dssp -----HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHH-----HHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT--
T ss_pred -----hHHHHHHHHhcCCccceecHHHHHHHHHHhChHH-----HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccC--
Confidence 2666666667789999999999999999988854 3356677888888888777888888887774322
Q ss_pred hHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHh
Q 000133 681 NREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLH 760 (2100)
Q Consensus 681 ~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~ 760 (2100)
.... ..++|.|..+|++.++-||..|..+|.+++.-++....+ +..-.+-+.+.++-++...-.+|.++.-
T Consensus 176 ~~yv----~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki-----i~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 176 FKYV----NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV-----VIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HHHH----GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH-----HHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred cccc----CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH-----HHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 2222 568999999999999999999999999999665543322 2333344555666678887888887764
No 123
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.87 E-value=0.00079 Score=73.58 Aligned_cols=215 Identities=17% Similarity=0.178 Sum_probs=160.4
Q ss_pred hcChHHHHHHHhcCCchHHHHHHHHHHHhccc--HHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCchhh
Q 000133 1357 ARCVEPLVSLLVTEFSPAQHSVVRALDKLVDD--EQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCK 1434 (2100)
Q Consensus 1357 ~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~--~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k 1434 (2100)
...+..|..+|.+.|+.++..|+.+|.++-.. ...+. ..-...++.++.++.+.|..+--.|+.||..+-.+.|-..
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~-~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~ 110 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRM-MVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGS 110 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHH-HHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccH-HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCH
Confidence 34677889999999999999999999999842 33333 2334568999999999999999999999999999877766
Q ss_pred HHHHhcCcHHHHHHHhccCChhHHHHHHHHHHHHHhccCCcccccccCchHHHHHHhccCCCCchhHhHHHHHHHHhhcC
Q 000133 1435 LEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEH 1514 (2100)
Q Consensus 1435 ~~i~~~~~i~~lv~~L~~~~~~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~~~~~~~~~A~~~L~nL~~~ 1514 (2100)
+...+ .+..+...+.+..+..+.++++.+..+.-. ...-+++..++.++.+.+ +.++-.+..+|.|+...
T Consensus 111 ~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~------~~~~~V~~~l~sLl~Skd--~~vK~agl~~L~eia~~ 180 (265)
T 3b2a_A 111 KTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPL------EDSKLVRTYINELVVSPD--LYTKVAGFCLFLNMLNS 180 (265)
T ss_dssp HHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBS------CCCHHHHHHHHHHHTCSS--HHHHHHHHHHHHHHGGG
T ss_pred HHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcc------cchHHHHHHHHHHHhCCC--hhHHHHHHHHHHHhhcc
Confidence 66655 566778888888888999999998666111 224457899999997766 88888899999998654
Q ss_pred CCcccccccccCCChHhhhhccCCCCHHHHHHHHHHHHHhhccccccccccccCchHHHHHHh--------ccCCHHHHH
Q 000133 1515 PQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVL--------GSGIHILQQ 1586 (2100)
Q Consensus 1515 ~~~~~~~~~~~~~~l~~Lv~~L~~~~~~vq~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~lL--------~s~~~~vr~ 1586 (2100)
.+... ...+++.-+-.+|+++++.++..|+.+|-++...+=. .+.++-+.+.+ .-+.|.+|.
T Consensus 181 S~D~~----i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~------~~~~~~~~~~~~~v~~l~~~~~~~~~~~ 250 (265)
T 3b2a_A 181 SADSG----HLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLL------ENVKIELLKISRIVDGLVYREGAPIIRL 250 (265)
T ss_dssp CSSCC----CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCC------SCCHHHHHHHHHHHHHGGGCSSCHHHHH
T ss_pred cCCHH----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCccc------HhHHHHHHHHHHHHHHHHHhcCChhHHH
Confidence 33322 2345666777889999999999999999999875322 23333333333 246677776
Q ss_pred HHHHHH
Q 000133 1587 RAVKAL 1592 (2100)
Q Consensus 1587 ~Al~AL 1592 (2100)
.|-..-
T Consensus 251 ka~~v~ 256 (265)
T 3b2a_A 251 KAKKVS 256 (265)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665443
No 124
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}
Probab=97.85 E-value=2.2e-06 Score=109.68 Aligned_cols=101 Identities=19% Similarity=0.241 Sum_probs=15.4
Q ss_pred hcCCCceeeeeccchhhhhhCCCcceEEEecCCCCCccccccccC---CCccccccceeccccCCCCCeEEEEeecCC--
Q 000133 1976 CLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVSTG---PNPEWEESFAWSFEIPPKGQKLHISCKNKS-- 2050 (2100)
Q Consensus 1976 ~i~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 2050 (2100)
|+.|.|.|+|.+..++... +.-+|.+.+++....+|||++++ .||+|+|.|+|... |+ .+.|.|+|+++.
T Consensus 8 r~~~~L~V~VieAk~L~~~---ddpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~-~~-~~~L~v~V~d~~d~ 82 (483)
T 3bxj_A 8 RVDNVLKLWIIEARELPPK---KRYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNL-PA-VRALRLHLYRDSDK 82 (483)
T ss_dssp EEEECC------------------------------------------------CCEECC--------------------
T ss_pred eeccEEEEEEEEcCCcCCC---CCCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecC-CC-ccEEEEEEEecCCc
Confidence 4568899999999988754 24588888876656689999998 99999999999875 44 699999999952
Q ss_pred --ccCC-cccceEEEEEeeEEeecccccceeecC
Q 000133 2051 --KMGK-SSFGKVTIQIDRVVMLGAVAGEYTLLP 2081 (2100)
Q Consensus 2051 --~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2081 (2100)
.+++ +.+|+|.|+++.+...+.+.+-|.|..
T Consensus 83 ~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~ 116 (483)
T 3bxj_A 83 KRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTL 116 (483)
T ss_dssp ------------------------CCEECC----
T ss_pred cccCCCCceEEEEEEEHHHhcCCCCCCeEEECCC
Confidence 3554 556999999999988788888999953
No 125
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=97.83 E-value=1.5e-05 Score=96.00 Aligned_cols=105 Identities=23% Similarity=0.284 Sum_probs=77.9
Q ss_pred CCCceeeeeccchhhh--hhCCCcceEEEecC--CCCCccccccccCCCccccccceeccccCC-CCCeEEEEeecCCcc
Q 000133 1978 PGTLVVIIKRGNNMKQ--SVGNPSVYCKLTLG--NTPPRQTKIVSTGPNPEWEESFAWSFEIPP-KGQKLHISCKNKSKM 2052 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 2052 (2100)
.|.|.|+|++..++.. ..|.+.-++++.+. ....++|+|++++.||+|+|.|.|.+..+- .+..|+|+|+|++.|
T Consensus 19 ~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~ 98 (296)
T 1dqv_A 19 SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRF 98 (296)
T ss_dssp SCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSS
T ss_pred CCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcCCC
Confidence 4789999999999964 34557788888883 456788999999999999999999875222 256999999999999
Q ss_pred CCcc-cceEEEE-EeeEEe-ecccccceeecCC
Q 000133 2053 GKSS-FGKVTIQ-IDRVVM-LGAVAGEYTLLPE 2082 (2100)
Q Consensus 2053 ~~~~-~~~~~~~-~~~~~~-~~~~~~~~~~~~~ 2082 (2100)
|++. +|++.|. +-.... .+....-|.|.+.
T Consensus 99 ~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~ 131 (296)
T 1dqv_A 99 SRHDLIGQVVLDNLLELAEQPPDRPLWRDILEG 131 (296)
T ss_dssp SCCCEEEEEECCCTTGGGSSCSSCCCCEECBCC
T ss_pred CCCceEEEEEeccccccccCCccceeeeccccc
Confidence 8755 5999984 222222 2233445667554
No 126
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.79 E-value=0.0015 Score=67.96 Aligned_cols=213 Identities=15% Similarity=0.228 Sum_probs=154.6
Q ss_pred hCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhcc-CCCHHHHHHHHHHHHHHhcCChhh
Q 000133 440 GREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILE-SGSAKAKEDSASILRNLCNHSEDI 518 (2100)
Q Consensus 440 ~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~vre~A~~aL~~L~~~~~~~ 518 (2100)
+...+..++.+|.++-..+|.+|...+.+++...++....+ +..|+.+++ +..-......+.+++.++...|+.
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~ 104 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL 104 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence 44567889999999999999999999999998777754433 334555654 446666566888999998766654
Q ss_pred HHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC---CcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchh
Q 000133 519 RACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT---ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSD 595 (2100)
Q Consensus 519 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~---~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~ 595 (2100)
-. +++|.+..-.+-++++++-.-..+|..++..... .....+..++.+.+..-|..+..=++ .+..+.
T Consensus 105 v~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~---alGen~- 175 (253)
T 2db0_A 105 VK-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIE---AMGENS- 175 (253)
T ss_dssp HH-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHH---TCCTTT-
T ss_pred HH-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHH---HHhccC-
Confidence 32 3678888888889999999999999998874422 34555666777655444444444333 332221
Q ss_pred HHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 000133 596 ILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIF 675 (2100)
Q Consensus 596 ~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~ 675 (2100)
.+ .+ ..-+|.|..+|.+.++-+|..|..+|.+++..++..+.. +..-+.-+.+.+..+++..-.+|+.+.
T Consensus 176 -~~-yv--~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki------i~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 176 -FK-YV--NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV------VIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp -HH-HH--GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH------HHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred -cc-cc--CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH------HHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 11 22 234899999999999999999999999999998865543 334556678888889988888888775
Q ss_pred c
Q 000133 676 L 676 (2100)
Q Consensus 676 ~ 676 (2100)
.
T Consensus 246 l 246 (253)
T 2db0_A 246 L 246 (253)
T ss_dssp H
T ss_pred H
Confidence 4
No 127
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.0001 Score=85.78 Aligned_cols=190 Identities=9% Similarity=0.110 Sum_probs=138.6
Q ss_pred HHHhhcCCCHHHHHHHHHHHHH-hhccCccchHHHHh-CCcHHHHHHhh-CCCCHHHHHHHHHHHHHhccCCc-ccHHHH
Q 000133 405 LVGLITMATNEVQEELVRALLK-LCNNEGSLWRALQG-REGIQLLISLL-GLSSEQQQECSVALLCLLSNEND-DSKWAI 480 (2100)
Q Consensus 405 Lv~lL~~~~~~v~~~A~~aL~~-L~~~~~~~~~~i~~-~g~i~~Lv~lL-~s~~~~v~~~A~~aL~nLs~~~~-~~~~~i 480 (2100)
+.+.+.+.++.-|..|+..|.. +..+++.....-.+ ...+..|...+ ++.+..++..|+.+|+.|+.+-. ..-..-
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 4456788999999999999999 87654432100001 13467788888 78899999999999999985332 111102
Q ss_pred HhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC--
Q 000133 481 TAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD-- 558 (2100)
Q Consensus 481 ~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~-- 558 (2100)
+....+|.++..+++..+.+++.+..+|..++...+..-..-.-...++.|+..|++.++.+|+.+..+|..++....
T Consensus 101 y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~ 180 (249)
T 2qk1_A 101 YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDG 180 (249)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCc
Confidence 223368999999999999999999999999987432110000001267888899999999999999999998886443
Q ss_pred ---------CCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCch
Q 000133 559 ---------TATISQLTALLTSDLPESKVYVLDALKSMLSVVSFS 594 (2100)
Q Consensus 559 ---------~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~ 594 (2100)
+..+|.|...+.+.++++|..|.++++.+....+..
T Consensus 181 ~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~ 225 (249)
T 2qk1_A 181 YSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMN 225 (249)
T ss_dssp SHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSG
T ss_pred chhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHH
Confidence 567888899999999999999999999887655443
No 128
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.77 E-value=0.0034 Score=77.31 Aligned_cols=345 Identities=12% Similarity=0.078 Sum_probs=197.0
Q ss_pred cCCchHHHHHHHhc-CCHHHHHHHHHHHHhhhccch---hhHHHHhcCC-h-HHHHH-hhcCCCHHHHHHHHHHHHHHhc
Q 000133 52 HSQAVPVLVSLLRS-GSLAVKIQAATVLGSLCKENE---LRVKVLLGGC-I-PPLLG-LLKSSSAEGQIAAAKTIYAVSQ 124 (2100)
Q Consensus 52 ~~g~v~~L~~lL~~-~~~~v~~~aa~~L~~L~~~~~---~~~~i~~~g~-i-~~Lv~-lL~s~~~~~~~~A~~aL~~Ls~ 124 (2100)
+..++..++.+|+. ..+++...+...+..+..+++ .+..+...+. . ..+.. .+..++.-....+...+.-++.
T Consensus 75 ~~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~ 154 (480)
T 1ho8_A 75 NGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQ 154 (480)
T ss_dssp SSTTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTS
T ss_pred CchHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence 34677889999985 566888889999999887765 4444433221 1 11222 3333333344555555444543
Q ss_pred cCCCCcccccchhccCChHHHHH------HhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHhcCC--HHHHHHhHcc
Q 000133 125 GGAKDYVGSKIFSTEGVVPVLWE------QLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGG--IDILVKLLTL 196 (2100)
Q Consensus 125 ~~~~~~~~~~~~~~~g~vp~L~~------lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~--v~~Lv~lL~s 196 (2100)
...+ ...++|.++. .|+.. +....+..+..+|..|.. .+.+|..+.+.++ +++++.+++.
T Consensus 155 ~~~~---------~~~~l~~l~~~~~~~~~L~~~--~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~ 222 (480)
T 1ho8_A 155 NGLH---------NVKLVEKLLKNNNLINILQNI--EQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQR 222 (480)
T ss_dssp TTTC---------CHHHHHHHHHCHHHHHHHHCT--TCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred cCCc---------cHhHHHHHhhhHHHHHHhccc--cCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHH
Confidence 1111 2334444443 44332 112234456777887774 4578777765543 6666554431
Q ss_pred ---------------C--CHHHHHHHHHHHHHHhhcCcchhhHHhhhchH--HHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q 000133 197 ---------------G--QSSTQAHVCFLLACMMEEDVSVCSRVLAADAT--KQLLKLLGSGNEASVRAEAAGALKSLSD 257 (2100)
Q Consensus 197 ---------------~--~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i--~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~ 257 (2100)
+ ...++.+++.+++.|+...+ ....+...+.. +.|+.+++....+++.+.+..+|.||..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~ 301 (480)
T 1ho8_A 223 ATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCS 301 (480)
T ss_dssp HHC-------------CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTS
T ss_pred hhccccccccccccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhc
Confidence 1 23567899999987776544 66666665543 6788888887778999999999999997
Q ss_pred CChHh-----HHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhh
Q 000133 258 HCKDA-----RREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVAD 332 (2100)
Q Consensus 258 ~~~~~-----~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~ 332 (2100)
..+.. ...++..++ ++++..|.... -.++++.+.--
T Consensus 302 ~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk------~~Dedl~edl~-------------------------------- 342 (480)
T 1ho8_A 302 TRVKQHKKVIKQLLLLGNA-LPTVQSLSERK------YSDEELRQDIS-------------------------------- 342 (480)
T ss_dssp SSSTTHHHHHHHHHHHHCH-HHHHHHHHSSC------CSSHHHHHHHH--------------------------------
T ss_pred ccchhhhhHHHHHHHHccc-hHHHHHHhhCC------CCcHHHHHHHH--------------------------------
Confidence 55211 122333344 44555554321 11233322211
Q ss_pred hhhhhHHHHHHhccccCCCCCCCchhhHHHHHh----hcCCCCChH-HHHHHHHHHHHHhCCCccchhhhc--cccHHHH
Q 000133 333 TLGALASALMIYDSKAESTKPSDPLIVEQTLVN----QFKPRLPFL-VQERTIEALASLYGNPLLSIKLEN--SEAKRLL 405 (2100)
Q Consensus 333 ~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~----lL~~~~~~~-vq~~aa~aL~~L~~~~~~~~~l~~--~g~i~~L 405 (2100)
++...++..... -+.+.....+ .|.=++... -+.+ .++..++.+ ...++.|
T Consensus 343 ------~L~e~L~~~~~~-----ltsfDeY~~El~sG~L~WSP~H~se~FW-----------~ENa~kf~e~~~~llk~L 400 (480)
T 1ho8_A 343 ------NLKEILENEYQE-----LTSFDEYVAELDSKLLCWSPPHVDNGFW-----------SDNIDEFKKDNYKIFRQL 400 (480)
T ss_dssp ------HHHHHHHHHHHT-----CCHHHHHHHHHHHTCCCCCGGGGCHHHH-----------HHHSGGGSSGGGHHHHHH
T ss_pred ------HHHHHHHHHHHh-----cccHHHHHHHHhcCCcccCCCccchhHH-----------HHHHHHHHhcchHHHHHH
Confidence 111111100000 0011111111 111111000 0000 011122222 2346788
Q ss_pred HHhhcC----------CCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 000133 406 VGLITM----------ATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLS 470 (2100)
Q Consensus 406 v~lL~~----------~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs 470 (2100)
+.+|++ .|+.+..-||.=|+.++...|.-+..+.+.|+-..++.++.+++++++.+|..++..+.
T Consensus 401 ~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 401 IELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 999973 36888999999999999999888888888899999999999999999999999888764
No 129
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A
Probab=97.74 E-value=1.5e-05 Score=104.54 Aligned_cols=116 Identities=22% Similarity=0.345 Sum_probs=86.3
Q ss_pred hcCCCceeeeeccchhhhh----hCCCcceEEEec-C---CCCCccccccccC-CCccccccceeccccCCCCCeEEEEe
Q 000133 1976 CLPGTLVVIIKRGNNMKQS----VGNPSVYCKLTL-G---NTPPRQTKIVSTG-PNPEWEESFAWSFEIPPKGQKLHISC 2046 (2100)
Q Consensus 1976 ~i~~~~~~~~~r~~~~~~~----~~~~~~~~~~~~-~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 2046 (2100)
..+|.|+|+|++..++... .|...-++.+.+ | +...++|||++++ .||+|+|.|+|.+. .|....|.+.|
T Consensus 494 ~~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~-~~el~~L~~~V 572 (624)
T 1djx_A 494 WRPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVT-VPDLALVRFMV 572 (624)
T ss_dssp CCCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEES-CGGGCEEEEEE
T ss_pred ccceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEe-cCCCCEEEEEE
Confidence 4678999999999999765 345667888887 4 2346789999998 99999999999988 45557999999
Q ss_pred ecCCccCCcc-cceEEEEEeeEEeecccccceeecCCCCCCCC---cceEEEEEe
Q 000133 2047 KNKSKMGKSS-FGKVTIQIDRVVMLGAVAGEYTLLPESKSGPS---RNLEIEFLW 2097 (2100)
Q Consensus 2047 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 2097 (2100)
++++.||++. +|+++|+++.+.. | | ..+.|. +++|.+ -+|-++|..
T Consensus 573 ~D~D~~~~dd~iG~~~ipl~~L~~-G-~-r~v~L~--d~~g~~~~~~~L~v~i~~ 622 (624)
T 1djx_A 573 EDYDSSSKNDFIGQSTIPWNSLKQ-G-Y-RHVHLL--SKNGDQHPSATLFVKISI 622 (624)
T ss_dssp EECCSSSCCEEEEEEEEEGGGBCC-E-E-EEEEEE--CTTSCEEEEEEEEEEEEE
T ss_pred EEcCCCCCCceeEEEEEEHHHcCC-C-c-EEEeCC--CCCcCCCCceEEEEEEEE
Confidence 9999997655 5999999999754 3 2 145553 334443 245555544
No 130
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.73 E-value=0.0043 Score=87.78 Aligned_cols=492 Identities=9% Similarity=0.050 Sum_probs=251.5
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHc-cCCHHHHHHHHHHHHHHhhcCcch----hhHHhhhchHHHHH
Q 000133 159 VDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLT-LGQSSTQAHVCFLLACMMEEDVSV----CSRVLAADATKQLL 233 (2100)
Q Consensus 159 v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~-s~~~~v~~~a~~~L~~L~~~~~~~----~~~i~~~g~i~~Lv 233 (2100)
.+..|...|..+-.. ++.|. .+..+|. +.++.+|..|+.+|.+....+-.. -...+....+..+.
T Consensus 23 ~r~~A~~~L~~~~~~-p~~w~---------~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~ 92 (971)
T 2x1g_F 23 NQAITHEWLTDAEAS-PQAWQ---------FSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIV 92 (971)
T ss_dssp C----CHHHHHTTTS-THHHH---------HHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-HHHHH---------HHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHH
Confidence 444566667776533 45555 3455554 467889999999998887432111 11222333344444
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcch
Q 000133 234 KLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNV 313 (2100)
Q Consensus 234 ~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~ 313 (2100)
+.- .+ +..+|...+.+|..++...-. .-.+.++.|+..+.+++. ..-.+....+.+...|..++...
T Consensus 93 ~~~-~~-~~~vr~kl~~~la~i~~~~~p-----~Wp~~l~~l~~~~~~~~~---~~~~~~~~~~~~l~iL~~l~EEi--- 159 (971)
T 2x1g_F 93 RFA-GG-PKIVLNRLCISLGAYIVHMLG-----EWPGAIEEVINTFQNQRM---PNVSADVQLWIMLEVLTAIPEEA--- 159 (971)
T ss_dssp HHT-TS-CHHHHHHHHHHHHHHHHHTTC-----C------HHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHH---
T ss_pred HhC-CC-CHHHHHHHHHHHHHHHHHccc-----cccHHHHHHHHHHhcccc---ccCCCHHHHHHHHHHHHHhHHHH---
Confidence 332 12 357999999999998864211 223567788887754210 00002345667777777655310
Q ss_pred hhhccccccCCCChhhhhhh-hhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCC-------hHHHHHHHHHHHH
Q 000133 314 ISSLGQSLESCSSPAQVADT-LGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLP-------FLVQERTIEALAS 385 (2100)
Q Consensus 314 i~~l~~~~~~~~~~~~~~~~-~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~-------~~vq~~aa~aL~~ 385 (2100)
... +...-+....+. ...+. .+.+.+..++..... ..++..+..|+..
T Consensus 160 ~~~-----~~~~~r~~~~~~l~~~~~-------------------~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~ 215 (971)
T 2x1g_F 160 QVI-----HTSVKRVVLRAEIAKRVQ-------------------LVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGT 215 (971)
T ss_dssp HHC-----CCSSCHHHHHHHHHTTHH-------------------HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH
T ss_pred hcc-----CcHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHH
Confidence 000 000001111110 00111 233333333321111 1467778888876
Q ss_pred Hh---CCCccchhhhccccHHHHHHhhc----------------CCCHHHHHHHHHHHHHhhccCc--cchHHHHhCCcH
Q 000133 386 LY---GNPLLSIKLENSEAKRLLVGLIT----------------MATNEVQEELVRALLKLCNNEG--SLWRALQGREGI 444 (2100)
Q Consensus 386 L~---~~~~~~~~l~~~g~i~~Lv~lL~----------------~~~~~v~~~A~~aL~~L~~~~~--~~~~~i~~~g~i 444 (2100)
.. ..|.. .....++.+.. +. ..+++.++.|+.++..+....+ +....+. ..+
T Consensus 216 ~~~~~~ip~~----~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~--~l~ 288 (971)
T 2x1g_F 216 WIKNIGYTIE----GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAF--VLI 288 (971)
T ss_dssp HHHHSCCCGG----GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHH--HHH
T ss_pred HHhhCCcCcc----ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHH--HHH
Confidence 42 23332 22334555554 31 1457889999999999887432 1112221 223
Q ss_pred HHHHHh-------hCCCC---HHHHHHHHHHHHHhccCCcccHH----------HHHhcCChHHHHHhccC-----CCHH
Q 000133 445 QLLISL-------LGLSS---EQQQECSVALLCLLSNENDDSKW----------AITAAGGIPPLVQILES-----GSAK 499 (2100)
Q Consensus 445 ~~Lv~l-------L~s~~---~~v~~~A~~aL~nLs~~~~~~~~----------~i~~~g~i~~Lv~lL~~-----~~~~ 499 (2100)
+.++.+ +...+ ++.....+..+..++........ .-.-...++.|+.+... .+++
T Consensus 289 ~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~ 368 (971)
T 2x1g_F 289 KMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEES 368 (971)
T ss_dssp HHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCT
T ss_pred HHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchh
Confidence 333332 23334 25555666666666532221100 00001234455554433 3677
Q ss_pred HHHHHHHHHHHHhcC--------C-hhhHHHHHh--CCcHHHHHHHhhcCC--------h-------hHHHHHHHHHHHH
Q 000133 500 AKEDSASILRNLCNH--------S-EDIRACVES--ADAVPALLWLLKNGS--------A-------NGKEIAAKTLNHL 553 (2100)
Q Consensus 500 vre~A~~aL~~L~~~--------~-~~~~~~i~~--~g~i~~Lv~lL~~~~--------~-------~~~~~Aa~aL~~L 553 (2100)
+...+++.+..++.. . +.....+.. ...++.++..+.-++ + ..+..+..+|..+
T Consensus 369 v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~ 448 (971)
T 2x1g_F 369 CSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYC 448 (971)
T ss_dssp THHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHH
Confidence 888888888777641 0 111111111 134455554443211 1 2456677788777
Q ss_pred hcCCCCCcHHHHHHH----hhc-----CCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHh---c--CCCH
Q 000133 554 IHKSDTATISQLTAL----LTS-----DLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKIL---S--STKE 619 (2100)
Q Consensus 554 ~~~~~~~~i~~L~~l----L~~-----~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL---~--s~~~ 619 (2100)
+..-....++.+... +.. .++..++.+..+++.++....... ...++.++.++ . +.++
T Consensus 449 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~--------~~~l~~l~~~l~~l~~~d~~~ 520 (971)
T 2x1g_F 449 YDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE--------KRQIPRLMRVLAEIPYEKLNV 520 (971)
T ss_dssp HTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC--------------CHHHHHHHHHHHSCTTTSCH
T ss_pred HHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh--------hHHHHHHHHHHHhcCccccCH
Confidence 765444445554433 333 567788889999988765433211 12344444433 3 3489
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHh
Q 000133 620 ETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLA 699 (2100)
Q Consensus 620 ~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll 699 (2100)
.+|..++++++.++..-.+.. -.-..+++.|+..+ + +.++..|+.++.+++...+ ......-...+..|.+++
T Consensus 521 ~vr~~a~~~l~~~~~~l~~~~--~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~--~~l~p~~~~ll~~l~~~l 593 (971)
T 2x1g_F 521 KLLGTALETMGSYCNWLMENP--AYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQ--LQLKPYADPLLNACHASL 593 (971)
T ss_dssp HHHHHHHHHHHHTHHHHC------CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHH--HhccccHHHHHHHHHHHH
Confidence 999999999999885311111 11123567777777 3 5789999999999986542 222222234455555666
Q ss_pred CC--CCHHHHHHHHHHHHHHhc
Q 000133 700 GS--PVLEVAEQATCALANLIL 719 (2100)
Q Consensus 700 ~~--~~~evr~~aa~aL~~L~~ 719 (2100)
.. .+.+.+.....+++.++.
T Consensus 594 ~~~~~~~~~~~~~~~ai~~i~~ 615 (971)
T 2x1g_F 594 NTGRMKNSDSVRLMFSIGKLMS 615 (971)
T ss_dssp HSTTSCHHHHHHHHHHHHHHHH
T ss_pred cCCCCChHHHHHHHHHHHHHHH
Confidence 66 467889999999999874
No 131
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=97.64 E-value=2.2e-05 Score=93.94 Aligned_cols=89 Identities=26% Similarity=0.424 Sum_probs=71.2
Q ss_pred CCCceeeeeccchhhh--hhCCCcceEEEecCC-C---CCccccccccCCCccccccceeccccCCC-CCeEEEEeecCC
Q 000133 1978 PGTLVVIIKRGNNMKQ--SVGNPSVYCKLTLGN-T---PPRQTKIVSTGPNPEWEESFAWSFEIPPK-GQKLHISCKNKS 2050 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 2050 (2100)
.|.|+|+|++..++.. ..|.+..|+++.+++ + ..++|+|++++.||+|+|.|.|.+..+.. ...|+|+|+|++
T Consensus 149 ~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d 228 (284)
T 2r83_A 149 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYD 228 (284)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEECC
T ss_pred CCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeCC
Confidence 4779999999999864 345677888888863 3 35689999999999999999998753332 348999999999
Q ss_pred ccCCcc-cceEEEEEee
Q 000133 2051 KMGKSS-FGKVTIQIDR 2066 (2100)
Q Consensus 2051 ~~~~~~-~~~~~~~~~~ 2066 (2100)
.||++. +|+|.|.+..
T Consensus 229 ~~~~~~~iG~~~i~l~~ 245 (284)
T 2r83_A 229 KIGKNDAIGKVFVGYNS 245 (284)
T ss_dssp SSSCCCEEEEEEEETTC
T ss_pred CCCCCcEEEEEEECCCC
Confidence 998765 5999999865
No 132
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.63 E-value=0.00053 Score=79.80 Aligned_cols=205 Identities=9% Similarity=0.073 Sum_probs=140.7
Q ss_pred HHHhhcCCCCChHHHHHHHHHHHH-Hh-CCCccchhhhc-cccHHHHHHhh-cCCCHHHHHHHHHHHHHhhccCc--cch
Q 000133 362 TLVNQFKPRLPFLVQERTIEALAS-LY-GNPLLSIKLEN-SEAKRLLVGLI-TMATNEVQEELVRALLKLCNNEG--SLW 435 (2100)
Q Consensus 362 ~Lv~lL~~~~~~~vq~~aa~aL~~-L~-~~~~~~~~l~~-~g~i~~Lv~lL-~~~~~~v~~~A~~aL~~L~~~~~--~~~ 435 (2100)
-+...+.+.. +.-|..+..+|.. +. ++++....-.+ .+.+..|...+ ++.+..++..|+.+|..|+.+-. ...
T Consensus 20 ~f~~~l~s~~-w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~ 98 (249)
T 2qk1_A 20 DFQERITSSK-WKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFS 98 (249)
T ss_dssp THHHHHTCSS-HHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred hHHHHhhcCC-HHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccccc
Confidence 3445555444 4458889999998 74 44543310111 23466777888 68899999999999999996543 232
Q ss_pred -HHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcC
Q 000133 436 -RALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNH 514 (2100)
Q Consensus 436 -~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~ 514 (2100)
.... ..+|.++..+++..+.++..+..+|-.++...+.......-...++.|+..|.+.++.+|+.++..|..+...
T Consensus 99 ~~y~~--~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 99 KDYVS--LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE 176 (249)
T ss_dssp HHHHH--HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 2222 3689999999999999999988888888753211000000012567888899999999999999999999865
Q ss_pred Chhh-HH--HHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHh
Q 000133 515 SEDI-RA--CVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALL 569 (2100)
Q Consensus 515 ~~~~-~~--~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL 569 (2100)
.+.. .. .......+|.|.+++.+.++.+|+.|..+|+.++..-..+.+.+++.-|
T Consensus 177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 4321 11 1112568899999999999999999999999988644444555555544
No 133
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=97.61 E-value=1.2e-05 Score=96.89 Aligned_cols=90 Identities=22% Similarity=0.333 Sum_probs=72.8
Q ss_pred CCCceeeeeccchhhhh--hCCCcceEEEecC-CC---CCccccccccCCCccccccceeccccCCC-CCeEEEEeecCC
Q 000133 1978 PGTLVVIIKRGNNMKQS--VGNPSVYCKLTLG-NT---PPRQTKIVSTGPNPEWEESFAWSFEIPPK-GQKLHISCKNKS 2050 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 2050 (2100)
.|.|+|+|++..++... .|.+.-|+++.++ ++ ..++|+|++++.||+|+|.|.|.+..+.. ...|+|+|+|++
T Consensus 151 ~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d 230 (296)
T 1dqv_A 151 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYD 230 (296)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECC
T ss_pred cceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeCC
Confidence 48899999999998643 4556789999887 33 45689999999999999999998764332 348999999999
Q ss_pred ccCCc-ccceEEEEEeeE
Q 000133 2051 KMGKS-SFGKVTIQIDRV 2067 (2100)
Q Consensus 2051 ~~~~~-~~~~~~~~~~~~ 2067 (2100)
.||++ .+|+|.|.+...
T Consensus 231 ~~~~~~~iG~~~i~l~~~ 248 (296)
T 1dqv_A 231 CIGHNEVIGVCRVGPEAA 248 (296)
T ss_dssp SSSCCEEEEECCCSSCTT
T ss_pred CCCCCceEEEEEECCccC
Confidence 99875 459999998864
No 134
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.56 E-value=0.74 Score=64.08 Aligned_cols=227 Identities=10% Similarity=0.017 Sum_probs=133.2
Q ss_pred hHHHHHHHHHHHHccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhcC---CHHHHHHHHHHHHhhhc
Q 000133 7 TLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSG---SLAVKIQAATVLGSLCK 83 (2100)
Q Consensus 7 ~~~~v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~~---~~~v~~~aa~~L~~L~~ 83 (2100)
+.+.|.+.++...++.+++..|..|-..|..+-+..+. ......+|.++ +..+|..++.+|.+..+
T Consensus 4 ~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~a-----------w~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~ 72 (980)
T 3ibv_A 4 SAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTG-----------WKICHEIFSEKTKYKPSTRLICLQTLSEKVR 72 (980)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTH-----------HHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChhH-----------HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 36788889988888877889999999999988876552 33445566553 68999999999988664
Q ss_pred --cch----hhHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCc
Q 000133 84 --ENE----LRVKVLLGGCIPPLLGLLK-SSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSG 156 (2100)
Q Consensus 84 --~~~----~~~~i~~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~ 156 (2100)
.++ .+..+ +...+..+...-. .+..-++...+.+|..+....-++. . .+.++.++.++..++. .
T Consensus 73 ~l~~e~~~~~~~~l-r~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~--W-----p~~i~~l~~~~~~~~~-~ 143 (980)
T 3ibv_A 73 EWNNESNLLELQMI-RDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSN--W-----NDFFASLQGVIAASSQ-S 143 (980)
T ss_dssp HCCTTTSHHHHHHH-HHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTT--C-----TTHHHHHHHHHHHHCC-H
T ss_pred hCChhhhHHHHHHH-HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCccc--C-----chHHHHHHHHhcCCCh-h
Confidence 122 22222 2222332322100 2345567777777777765211111 1 2456777777765321 0
Q ss_pred chHHHHHHHHHHHhcc---C-----Ch--hh-----HHHHHhcC---CHHHHHHhH----ccCCHHHHHHHHHHHHHHhh
Q 000133 157 NVVDNLLTGALRNLST---S-----TE--GF-----WAATVQAG---GIDILVKLL----TLGQSSTQAHVCFLLACMME 214 (2100)
Q Consensus 157 ~~v~~~a~~aL~nL~~---~-----~~--~~-----~~~i~~~g---~v~~Lv~lL----~s~~~~v~~~a~~~L~~L~~ 214 (2100)
......++.|..++. + .+ .. +..+.+.. +++....+| .+.++.++..+..+|.....
T Consensus 144 -~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~ 222 (980)
T 3ibv_A 144 -EFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVS 222 (980)
T ss_dssp -HHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHh
Confidence 122223334432211 1 00 01 12222210 133333344 34778888888888877665
Q ss_pred cCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCC
Q 000133 215 EDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHC 259 (2100)
Q Consensus 215 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~ 259 (2100)
.-+ ...+++...++.+.+.|.. .+++..|+.+|..+....
T Consensus 223 wi~--~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~ 262 (980)
T 3ibv_A 223 WIN--INLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKK 262 (980)
T ss_dssp TSC--HHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSC
T ss_pred hcC--HHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcC
Confidence 432 3556677888999988876 579999999999988643
No 135
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.53 E-value=0.016 Score=71.31 Aligned_cols=339 Identities=13% Similarity=0.045 Sum_probs=196.5
Q ss_pred hhHHHHHhhcCCCCChHHHHHHHHHHHHH-hCCC---ccchhhh-ccccHHHHHH-hhcCCCHHHHHHHHHHHHHhhccC
Q 000133 358 IVEQTLVNQFKPRLPFLVQERTIEALASL-YGNP---LLSIKLE-NSEAKRLLVG-LITMATNEVQEELVRALLKLCNNE 431 (2100)
Q Consensus 358 ~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L-~~~~---~~~~~l~-~~g~i~~Lv~-lL~~~~~~v~~~A~~aL~~L~~~~ 431 (2100)
.....++.+|...+...+.+.+..-+..+ ..+| .....+. .......+.. .+..+++-.+..++.++..++..+
T Consensus 77 ~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~ 156 (480)
T 1ho8_A 77 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG 156 (480)
T ss_dssp TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred hHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccC
Confidence 34566777777666555566666677776 3444 2212222 2222222333 233445556677777767765443
Q ss_pred ccchHHHHhCCcHH--HHHHhhCC-CCHHHHHHHHHHHHHhccCCcccHHHHHhcCC--hHHHHHhcc------------
Q 000133 432 GSLWRALQGREGIQ--LLISLLGL-SSEQQQECSVALLCLLSNENDDSKWAITAAGG--IPPLVQILE------------ 494 (2100)
Q Consensus 432 ~~~~~~i~~~g~i~--~Lv~lL~s-~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~--i~~Lv~lL~------------ 494 (2100)
....+.+. ..+. -++..|.+ .+.+.+..++.+|..|.. .++.|..+.+.++ +|+++..+.
T Consensus 157 ~~~~~~l~--~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~ 233 (480)
T 1ho8_A 157 LHNVKLVE--KLLKNNNLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIV 233 (480)
T ss_dssp TCCHHHHH--HHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred CccHhHHH--HHhhhHHHHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccccc
Confidence 33211111 1112 24445554 345667789999999985 7888888887654 566654332
Q ss_pred ----CC-CHHHHHHHHHHHHHHhcCChhhHHHHHhCCcH--HHHHHHhhc-CChhHHHHHHHHHHHHhcCCCCC---cHH
Q 000133 495 ----SG-SAKAKEDSASILRNLCNHSEDIRACVESADAV--PALLWLLKN-GSANGKEIAAKTLNHLIHKSDTA---TIS 563 (2100)
Q Consensus 495 ----~~-~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i--~~Lv~lL~~-~~~~~~~~Aa~aL~~L~~~~~~~---~i~ 563 (2100)
.+ ..+++.+++.++|-|+-. ++....+...+.. +.|+++++. ...++.+-+..+|.|+....... .++
T Consensus 234 ~~~~~~~~~Ql~Y~~ll~iWlLSF~-~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~ 312 (480)
T 1ho8_A 234 ATNSNHLGIQLQYHSLLLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK 312 (480)
T ss_dssp -----CCHHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred cccCCCccHHHHHHHHHHHHHHHcC-HHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence 11 356788999999999985 6666666666644 677788886 45789999999999998754211 111
Q ss_pred HHHHHhhcCCcchHHHHHHHHHHHHhcc-CchhHHHHhhhccchHHHHHHHhc----CCCHHHHHHHHHHH-HHHhcCCh
Q 000133 564 QLTALLTSDLPESKVYVLDALKSMLSVV-SFSDILREGSAANDAVETMIKILS----STKEETQAKSASAL-AGIFETRK 637 (2100)
Q Consensus 564 ~L~~lL~~~~~~~~~~a~~aL~~l~~~~-~~~~~~~~~i~~~~~i~~Lv~lL~----s~~~~~~~~Aa~aL-~~L~~~~~ 637 (2100)
.++. .......+..|.... +.+|+... +..|.+.|. .-+. .-++..... +.|.+++.
T Consensus 313 ~~~~---------~~~~l~~l~~L~~rk~~Dedl~ed-------l~~L~e~L~~~~~~lts-fDeY~~El~sG~L~WSP~ 375 (480)
T 1ho8_A 313 QLLL---------LGNALPTVQSLSERKYSDEELRQD-------ISNLKEILENEYQELTS-FDEYVAELDSKLLCWSPP 375 (480)
T ss_dssp HHHH---------HHCHHHHHHHHHSSCCSSHHHHHH-------HHHHHHHHHHHHHTCCH-HHHHHHHHHHTCCCCCGG
T ss_pred HHHH---------HccchHHHHHHhhCCCCcHHHHHH-------HHHHHHHHHHHHHhccc-HHHHHHHHhcCCcccCCC
Confidence 1110 001122233332221 12221111 223333222 1111 111222222 33555433
Q ss_pred hhHHHHHhc----------CchHHHHHhhcC----------CCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHH
Q 000133 638 DLRESSIAV----------KTLWSVMKLLDV----------GSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVV 697 (2100)
Q Consensus 638 ~~~~~~~~~----------g~v~~Lv~lL~~----------~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ 697 (2100)
+.-+.+-.. ..+..|+++|.+ .++.+..-||.=|+.++.+.+..... +-+-|+=..+++
T Consensus 376 H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i-~~~lg~K~~VM~ 454 (480)
T 1ho8_A 376 HVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDV-LDKTGGKADIME 454 (480)
T ss_dssp GGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHH-HHHHSHHHHHHH
T ss_pred ccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHH-HHHcCcHHHHHH
Confidence 322222111 278899999963 36778888999999999988754443 667788888889
Q ss_pred HhCCCCHHHHHHHHHHHHHHh
Q 000133 698 LAGSPVLEVAEQATCALANLI 718 (2100)
Q Consensus 698 ll~~~~~evr~~aa~aL~~L~ 718 (2100)
+|.+++++||.+|..|+..++
T Consensus 455 Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 455 LLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HTSCSSHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHH
Confidence 999999999999999998776
No 136
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.30 E-value=0.84 Score=63.63 Aligned_cols=223 Identities=14% Similarity=0.094 Sum_probs=125.4
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhccC---CCCcc
Q 000133 56 VPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLK-SSSAEGQIAAAKTIYAVSQGG---AKDYV 131 (2100)
Q Consensus 56 v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~~Ls~~~---~~~~~ 131 (2100)
+..++..+-+++.+.|..|-..|..+-+.+ ++++.+..+|. +.++.+|..|+..|.+.-... .+++
T Consensus 18 Le~av~~ly~p~~~~r~~A~~~L~~~q~sp---------~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~~e- 87 (1023)
T 4hat_C 18 LDQVVSTFYQGSGVQQKQAQEILTKFQDNP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPND- 87 (1023)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHCT---------TGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSCHH-
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHcCc---------cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHH-
Confidence 445555555666677888888887765444 55666677774 557889999999998765511 1111
Q ss_pred cccchhccCChHHHHHHhhccC--CCcchHHHHHHHHHHHhccCC-hhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHH
Q 000133 132 GSKIFSTEGVVPVLWEQLKNGL--KSGNVVDNLLTGALRNLSTST-EGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFL 208 (2100)
Q Consensus 132 ~~~~~~~~g~vp~L~~lL~~~~--~~~~~v~~~a~~aL~nL~~~~-~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~ 208 (2100)
.+..++..++..+........ ...+.++.....++..+.... +..|. +.++.++.++++ ++........+
T Consensus 88 -~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp-----~~l~dL~~~l~~-~~~~~~~~L~i 160 (1023)
T 4hat_C 88 -HRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWP-----EFIPELIGSSSS-SVNVCENNMIV 160 (1023)
T ss_dssp -HHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCT-----THHHHHHHHTTT-CHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhch-----HHHHHHHHHhcC-CHHHHHHHHHH
Confidence 111223333333322211100 012334455556665554321 23454 457788888865 34556666777
Q ss_pred HHHHhhc-----Cc---ch-hhHH----hh--hchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChH
Q 000133 209 LACMMEE-----DV---SV-CSRV----LA--ADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIP 273 (2100)
Q Consensus 209 L~~L~~~-----~~---~~-~~~i----~~--~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~ 273 (2100)
|..+... .. .. +..+ .. ...+..+.++|....+.++...+..+|.....--+ -..+.+.+-++
T Consensus 161 L~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~--i~~i~~~~ll~ 238 (1023)
T 4hat_C 161 LKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIP--YRYIYETNILE 238 (1023)
T ss_dssp HHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSC--THHHHSSSHHH
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCC--HHHhcchhHHH
Confidence 7665532 01 01 1111 11 23344455555554445677888888877665222 23466677788
Q ss_pred HHH-HhhcCCCcchhhhhhhHHHHHHHHHHHHHhhC
Q 000133 274 AMI-NATIAPSKEFMQGEYAQALQENAMCALANISG 308 (2100)
Q Consensus 274 ~Lv-~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~ 308 (2100)
.++ .++.. +.++..|+.+|..+..
T Consensus 239 ~l~~~~L~~-----------~~~r~~A~ecL~eIv~ 263 (1023)
T 4hat_C 239 LLSTKFMTS-----------PDTRAITLKCLTEVSN 263 (1023)
T ss_dssp HHHTHHHHS-----------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCC-----------HHHHHHHHHHHHHHHc
Confidence 888 77643 5688999999998765
No 137
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.29 E-value=0.018 Score=78.13 Aligned_cols=282 Identities=12% Similarity=0.089 Sum_probs=190.4
Q ss_pred HHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCcc---chHHHHhCCcHHHHHHhhC
Q 000133 376 QERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGS---LWRALQGREGIQLLISLLG 452 (2100)
Q Consensus 376 q~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~---~~~~i~~~g~i~~Lv~lL~ 452 (2100)
+..++..++.+..++.....+. .+.+..+...+.+.... +.|+.++..||..... ....++ +.++.++..+.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~ 105 (986)
T 2iw3_A 31 RHEIASEVASFLNGNIIEHDVP-EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAG 105 (986)
T ss_dssp HHHHHHHHHHHHTSSCSSSSCC-HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccccccccc-hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhc
Confidence 4667778888744332111121 35666677777655333 9999999999954322 222333 56889999999
Q ss_pred CCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHH
Q 000133 453 LSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG-SAKAKEDSASILRNLCNHSEDIRACVESADAVPAL 531 (2100)
Q Consensus 453 s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~L 531 (2100)
+....++..|..++..+....+.... ...+|.|+..|.++ .-+.+..|+.++..|+...++. -...-...+|.+
T Consensus 106 dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~-~~~~~~~~~p~~ 180 (986)
T 2iw3_A 106 NKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQ-VALRMPELIPVL 180 (986)
T ss_dssp CSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHH-HHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHH-HHHhccchhcch
Confidence 99999998877776666543333221 22578899988766 5789999999999999644321 111124578999
Q ss_pred HHHhhcCChhHHHHHHHHHHHHhcCCCC----CcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchH
Q 000133 532 LWLLKNGSANGKEIAAKTLNHLIHKSDT----ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAV 607 (2100)
Q Consensus 532 v~lL~~~~~~~~~~Aa~aL~~L~~~~~~----~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i 607 (2100)
-+.+.+..+++++.|..++..+|..-++ ..+|.|+.-+.+.+ ++ -.++..|+..+.+.......=..+ +
T Consensus 181 ~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~-~~-~~~~~~l~~~tfv~~v~~~~l~~~-----~ 253 (986)
T 2iw3_A 181 SETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPT-EV-PETVHLLGATTFVAEVTPATLSIM-----V 253 (986)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTT-HH-HHHHHHHTTCCCCSCCCHHHHHHH-----H
T ss_pred HhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChh-hh-HHHHHHhhcCeeEeeecchhHHHH-----H
Confidence 9999999999999999999999874433 56777887776552 22 223444444344444333222222 7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCChh-hHHHHHhcCchHHHHHhh-cCCCHHHHHHHHHHHHHH
Q 000133 608 ETMIKILSSTKEETQAKSASALAGIFETRKD-LRESSIAVKTLWSVMKLL-DVGSECILVEASRCLAAI 674 (2100)
Q Consensus 608 ~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~-~~~~~~~~g~v~~Lv~lL-~~~~~~v~~~aa~aL~~L 674 (2100)
|.|..-|+..+..+++.++-.+-|+|+--++ ...+......+|.|.+.. .-.+|+++..+.+++..|
T Consensus 254 p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 254 PLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTL 322 (986)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred HHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 7788888888999999999999999986544 333456667888888766 456788888888888777
No 138
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=97.18 E-value=0.00013 Score=98.00 Aligned_cols=103 Identities=25% Similarity=0.493 Sum_probs=81.8
Q ss_pred CCCceeeeeccchhhh--hhCCCcceEEEecC----CCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCc
Q 000133 1978 PGTLVVIIKRGNNMKQ--SVGNPSVYCKLTLG----NTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSK 2051 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2051 (2100)
+|.|+|+|.+..++.. ..|.+.-+.++.+- ....++|+|++++.||+|+|.|.|.+........|.|+|++++.
T Consensus 171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~ 250 (674)
T 3pfq_A 171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL 250 (674)
T ss_dssp SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCS
T ss_pred cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeeccc
Confidence 5789999999988854 34556667766662 33467899999999999999999998866677789999999999
Q ss_pred cCCccc-ceEEEEEeeEEeecccccceeecC
Q 000133 2052 MGKSSF-GKVTIQIDRVVMLGAVAGEYTLLP 2081 (2100)
Q Consensus 2052 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 2081 (2100)
+|++.+ |.+.|.+..+...+ ..+-|.|..
T Consensus 251 ~~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls 280 (674)
T 3pfq_A 251 TSRNDFMGSLSFGISELQKAG-VDGWFKLLS 280 (674)
T ss_dssp SSCCEECCBCCCBTTHHHHCC-EEEEEECBC
T ss_pred ccccccccccccchhhhccCC-cccceeecc
Confidence 987765 99999998886654 366676643
No 139
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.17 E-value=0.22 Score=70.80 Aligned_cols=514 Identities=11% Similarity=0.043 Sum_probs=246.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhccCCCCcccccchhc
Q 000133 60 VSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLK-SSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFST 138 (2100)
Q Consensus 60 ~~lL~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~ 138 (2100)
+..+-+++.+.|.+|-..|..+-+.+ +++..+..+|. +.+..+|..|+..|.+.....-.. -..-..
T Consensus 22 l~~~~~p~~~~r~~Ae~~L~~~~~~p---------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~---l~~~~~ 89 (1049)
T 3m1i_C 22 VSTFYQGSGVQQKQAQEILTKFQDNP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKL---LPNDHR 89 (1049)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHST---------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGG---SCHHHH
T ss_pred HHHHhCCChHHHHHHHHHHHHHHhCc---------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCcc---CCHHHH
Confidence 33334566677888888888775443 56677777774 457888999999999876521100 000011
Q ss_pred cCChHHHHHHhhccCCC------cchHHHHHHHHHHHhccC-ChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHH
Q 000133 139 EGVVPVLWEQLKNGLKS------GNVVDNLLTGALRNLSTS-TEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLAC 211 (2100)
Q Consensus 139 ~g~vp~L~~lL~~~~~~------~~~v~~~a~~aL~nL~~~-~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~ 211 (2100)
.++-..++..+...... ++.++..+..++..++.. -+..|. +.++.|+.+++ +++..+..+..+|..
T Consensus 90 ~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp-----~ll~~L~~~~~-~~~~~~~~~l~~L~~ 163 (1049)
T 3m1i_C 90 IGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWP-----EFIPELIGSSS-SSVNVCENNMIVLKL 163 (1049)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCT-----THHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccch-----HHHHHHHHHHc-cChHHHHHHHHHHHH
Confidence 12222344444332111 234666666666666532 224555 45788888886 566667777788877
Q ss_pred HhhcCc--------chh-----hHHhh--hchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHH
Q 000133 212 MMEEDV--------SVC-----SRVLA--ADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMI 276 (2100)
Q Consensus 212 L~~~~~--------~~~-----~~i~~--~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv 276 (2100)
+...-. ..+ ..+.. ...+..+.+.+....+.+++..+..++.+....-+. ..+.+..-++.+.
T Consensus 164 l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~--~~~~~~~ll~~l~ 241 (1049)
T 3m1i_C 164 LSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPY--RYIYETNILELLS 241 (1049)
T ss_dssp HHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT--HHHHSSSHHHHHH
T ss_pred HHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH--HHHhhhhHHHHHH
Confidence 762211 001 11111 122334455555544467888888888775542221 2234444444444
Q ss_pred HhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCc
Q 000133 277 NATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDP 356 (2100)
Q Consensus 277 ~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~ 356 (2100)
..+.. ++.++..++.+|..+....- ++.. ..... .+..++.
T Consensus 242 ~~~l~----------~~~~~~~a~~~L~~i~~~~~-----------~~~~-~~~~~------~~~~l~~----------- 282 (1049)
T 3m1i_C 242 TKFMT----------SPDTRAITLKCLTEVSNLKI-----------PQDN-DLIKR------QTVLFFQ----------- 282 (1049)
T ss_dssp THHHH----------SHHHHHHHHHHHHHHHHCCC-----------CTTC-HHHHH------HHHHHHH-----------
T ss_pred HHhCC----------CHhHHHHHHHHHHHHHhCCC-----------Ccch-hhHHH------HHHHHHH-----------
Confidence 22211 25677778888776553100 0000 00000 0000000
Q ss_pred hhhHHHHHh-hcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhcc-----
Q 000133 357 LIVEQTLVN-QFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNN----- 430 (2100)
Q Consensus 357 ~~i~~~Lv~-lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~----- 430 (2100)
.+...+.. ++-.... +......-.+.+.+.....++.+..+...
T Consensus 283 -~~l~~l~~si~p~~~~-----------------------------l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~ 332 (1049)
T 3m1i_C 283 -NTLQQIATSVMPVTAD-----------------------------LKATYANANGNDQSFLQDLAMFLTTYLARNRALL 332 (1049)
T ss_dssp -HHHHHHHHHTCCTTSC-----------------------------HHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHhhCCCccc-----------------------------HHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000100 0000000 00000001122333333444444332221
Q ss_pred --CccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccC---CcccHHH--HHhcCChHHHHHhccCC-------
Q 000133 431 --EGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNE---NDDSKWA--ITAAGGIPPLVQILESG------- 496 (2100)
Q Consensus 431 --~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~---~~~~~~~--i~~~g~i~~Lv~lL~~~------- 496 (2100)
.+.....+ ...++.++.....++.++...+......++.. .+..+.. -.-...++.++..+.-+
T Consensus 333 ~~~~~~~~~l--~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~ 410 (1049)
T 3m1i_C 333 ESDESLRELL--LNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVE 410 (1049)
T ss_dssp HSCGGGHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEE
T ss_pred cCChhhHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeee
Confidence 11111222 13466666666677778777777666666530 0111100 01111234444433211
Q ss_pred ------------CH---HHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhh--cCChhHHHHHHHHHHHHhcCCCC
Q 000133 497 ------------SA---KAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLK--NGSANGKEIAAKTLNHLIHKSDT 559 (2100)
Q Consensus 497 ------------~~---~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~~~~~Aa~aL~~L~~~~~~ 559 (2100)
+. ..+..+..+|..++...+.. +. .-..+.+-+.+. ..+|+.++.++.+++.++..-..
T Consensus 411 dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~---~l-~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~ 486 (1049)
T 3m1i_C 411 NDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVID---TE-EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSE 486 (1049)
T ss_dssp CTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHH---HH-HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCH
T ss_pred CCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHH---HH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCc
Confidence 11 23445666777776432221 10 012233334443 35789999999999988753221
Q ss_pred ----CcHHHHHHHhhc---------CCcchHHHHHHHHHHHHhc-cCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHH
Q 000133 560 ----ATISQLTALLTS---------DLPESKVYVLDALKSMLSV-VSFSDILREGSAANDAVETMIKILSSTKEETQAKS 625 (2100)
Q Consensus 560 ----~~i~~L~~lL~~---------~~~~~~~~a~~aL~~l~~~-~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~A 625 (2100)
..++.++..+.. .++-++..+..+++.++.. ..+++.+. ..++.++..|.++++.++..|
T Consensus 487 ~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~------~vl~~ll~~l~~~~~~V~~~A 560 (1049)
T 3m1i_C 487 DTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR------TVILKLFEFMHETHEGVQDMA 560 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH------HHHHHHHHHTTSSCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH------HHHHHHHHHhcCCCHHHHHHH
Confidence 124444443321 1222343466777766653 22333222 237778888888899999999
Q ss_pred HHHHHHHhcCChhhHHHHH----------hcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 000133 626 ASALAGIFETRKDLRESSI----------AVKTLWSVMKLLDVGSECILVEASRCLAAIFLS 677 (2100)
Q Consensus 626 a~aL~~L~~~~~~~~~~~~----------~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~ 677 (2100)
|.++.+++...+ ..+. -...+..+..++..-+.+.......+++.+...
T Consensus 561 ~~al~~l~~~~~---~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~ 619 (1049)
T 3m1i_C 561 CDTFIKIVQKCK---YHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1049)
T ss_dssp HHHHHHHHHHHT---HHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH---HHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHc
Confidence 999999997422 2222 112333333444444444455555666665443
No 140
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.07 E-value=1.1 Score=63.59 Aligned_cols=153 Identities=8% Similarity=0.034 Sum_probs=89.1
Q ss_pred HHHHHHhc--CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcC-----CCHHHHHHHHHHHHHHhcCCch
Q 000133 608 ETMIKILS--STKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDV-----GSECILVEASRCLAAIFLSVRE 680 (2100)
Q Consensus 608 ~~Lv~lL~--s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~-----~~~~v~~~aa~aL~~L~~~~~~ 680 (2100)
+.+-..+. +.+...++.|+++++.++.......+......+++.|..+... +.+.++..++.+++..+.-...
T Consensus 454 ~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~ 533 (1049)
T 3m1i_C 454 SKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKA 533 (1049)
T ss_dssp HHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHh
Confidence 33334443 3578889999999999986433221222223355555554321 2233444577888876532111
Q ss_pred hHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHH--------HHHcCcHHHHHHHHccCChhHHHHHH
Q 000133 681 NREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEK--------AIAEEIILPATRVLCEGTISGKTLAA 752 (2100)
Q Consensus 681 ~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~--------~v~~~~v~~L~~ll~~~~~~~~~~Aa 752 (2100)
.. . +. ...++.|+..+.++++.|+..|+.|+.+++.+...... ..-+.++..|..++..-+.+......
T Consensus 534 ~~-~-~l-~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~ 610 (1049)
T 3m1i_C 534 HW-N-FL-RTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFY 610 (1049)
T ss_dssp CH-H-HH-HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHH
T ss_pred HH-H-HH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 11 1 11 23567777788888999999999999999854322111 11345556666666665555555666
Q ss_pred HHHHHHHhcCc
Q 000133 753 AAIARLLHSRK 763 (2100)
Q Consensus 753 ~aL~~l~~~~~ 763 (2100)
.++..+....+
T Consensus 611 eai~~ii~~~~ 621 (1049)
T 3m1i_C 611 KACGIIISEER 621 (1049)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHHcCC
Confidence 77777765444
No 141
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.06 E-value=1.2 Score=61.98 Aligned_cols=156 Identities=8% Similarity=0.024 Sum_probs=99.4
Q ss_pred HHHHHHHhcC--CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcC-----CCHHHHHHHHHHHHHHhcCCc
Q 000133 607 VETMIKILSS--TKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDV-----GSECILVEASRCLAAIFLSVR 679 (2100)
Q Consensus 607 i~~Lv~lL~s--~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~-----~~~~v~~~aa~aL~~L~~~~~ 679 (2100)
++.+.+.+.+ .+...++++++|++.++.+..+..+...-..++|.|+.++.. ....++..++.+++..+.-..
T Consensus 453 ~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~ 532 (1023)
T 4hat_C 453 ISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLK 532 (1023)
T ss_dssp HHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHh
Confidence 3444444443 578999999999999998765444455556788889988753 222344467788887654221
Q ss_pred hhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHH--------HHHcCcHHHHHHHHccCChhHHHHH
Q 000133 680 ENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEK--------AIAEEIILPATRVLCEGTISGKTLA 751 (2100)
Q Consensus 680 ~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~--------~v~~~~v~~L~~ll~~~~~~~~~~A 751 (2100)
... . + -...+..|++.+.++++.++..|++|+.+|+.+...... ..-+.++..+.......+.......
T Consensus 533 ~~~-~-~-L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~l 609 (1023)
T 4hat_C 533 AHW-N-F-LRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTF 609 (1023)
T ss_dssp HCH-H-H-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHH
T ss_pred ccH-H-H-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHH
Confidence 111 1 1 123455556666778899999999999999854322111 1123455556666655666667788
Q ss_pred HHHHHHHHhcCccc
Q 000133 752 AAAIARLLHSRKID 765 (2100)
Q Consensus 752 a~aL~~l~~~~~~~ 765 (2100)
..|++.+....+..
T Consensus 610 yeai~~vi~~~~~~ 623 (1023)
T 4hat_C 610 YKACGIIISEERSV 623 (1023)
T ss_dssp HHHHHHHHTTCCSH
T ss_pred HHHHHHHHHhCCCH
Confidence 88888888876654
No 142
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.95 E-value=0.00017 Score=82.83 Aligned_cols=186 Identities=16% Similarity=0.087 Sum_probs=134.7
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCCh
Q 000133 407 GLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGI 486 (2100)
Q Consensus 407 ~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i 486 (2100)
.++.++++.+|..++..+ ....|..+++++++.|+..++.. +. .
T Consensus 57 ~ll~d~~~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~---L~---------------~ 100 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYR---LP---------------R 100 (244)
T ss_dssp GGTTCSSHHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTT---SC---------------S
T ss_pred HHhcCCCHHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHH---CC---------------H
Confidence 456788999999988743 12236678899999999988853 21 2
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHH
Q 000133 487 PPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLT 566 (2100)
Q Consensus 487 ~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~ 566 (2100)
+.|..++.+++..+|..++..+ . .+.|..++++.++.++..++..+ . .+.+.
T Consensus 101 ~~L~~ll~D~d~~VR~~aA~~l---~---------------~~~L~~L~~D~d~~VR~~aA~~l---~-------~~~l~ 152 (244)
T 1lrv_A 101 EQLSALMFDEDREVRITVADRL---P---------------LEQLEQMAADRDYLVRAYVVQRI---P-------PGRLF 152 (244)
T ss_dssp GGGGGTTTCSCHHHHHHHHHHS---C---------------TGGGGGGTTCSSHHHHHHHHHHS---C-------GGGGG
T ss_pred HHHHHHHcCCCHHHHHHHHHhC---C---------------HHHHHHHHcCCCHHHHHHHHHhc---C-------HHHHH
Confidence 4688889999999999887742 1 12456678888999999888732 1 12345
Q ss_pred HHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc
Q 000133 567 ALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAV 646 (2100)
Q Consensus 567 ~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~ 646 (2100)
.++++.++.+|..+...+. .+.+..+++++++.+|..++..+
T Consensus 153 ~l~~D~d~~VR~~aa~~l~---------------------~~ll~~ll~D~d~~VR~aaa~~l----------------- 194 (244)
T 1lrv_A 153 RFMRDEDRQVRKLVAKRLP---------------------EESLGLMTQDPEPEVRRIVASRL----------------- 194 (244)
T ss_dssp GTTTCSCHHHHHHHHHHSC---------------------GGGGGGSTTCSSHHHHHHHHHHC-----------------
T ss_pred HHHcCCCHHHHHHHHHcCC---------------------HHHHHHHHcCCCHHHHHHHHHhC-----------------
Confidence 6677888888887655411 23345678899999999998753
Q ss_pred CchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHH
Q 000133 647 KTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALA 715 (2100)
Q Consensus 647 g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~ 715 (2100)
..+.|..++.+++..|+..++..++ .+.|..| .++++.||+.++..|+
T Consensus 195 -~~~~L~~Ll~D~d~~VR~~aa~~l~-------------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 195 -RGDDLLELLHDPDWTVRLAAVEHAS-------------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp -CGGGGGGGGGCSSHHHHHHHHHHSC-------------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred -CHHHHHHHHcCCCHHHHHHHHHcCC-------------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 1356888899999999999888752 3456566 9999999999887664
No 143
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.78 E-value=0.00029 Score=80.83 Aligned_cols=185 Identities=13% Similarity=0.066 Sum_probs=133.7
Q ss_pred HhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcH
Q 000133 449 SLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAV 528 (2100)
Q Consensus 449 ~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i 528 (2100)
.+++++++.++..++..| ....|..++.++++.+|..++..| . .
T Consensus 57 ~ll~d~~~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L------~------------~ 100 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRL------P------------R 100 (244)
T ss_dssp GGTTCSSHHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTS------C------------S
T ss_pred HHhcCCCHHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHC------C------------H
Confidence 456889999999888632 134578888999999999888642 1 1
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHH
Q 000133 529 PALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVE 608 (2100)
Q Consensus 529 ~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~ 608 (2100)
+.|..++++.++.++..++..| . .+.|..++++.++++|..+...+. .+
T Consensus 101 ~~L~~ll~D~d~~VR~~aA~~l------~----~~~L~~L~~D~d~~VR~~aA~~l~---------------------~~ 149 (244)
T 1lrv_A 101 EQLSALMFDEDREVRITVADRL------P----LEQLEQMAADRDYLVRAYVVQRIP---------------------PG 149 (244)
T ss_dssp GGGGGTTTCSCHHHHHHHHHHS------C----TGGGGGGTTCSSHHHHHHHHHHSC---------------------GG
T ss_pred HHHHHHHcCCCHHHHHHHHHhC------C----HHHHHHHHcCCCHHHHHHHHHhcC---------------------HH
Confidence 4577888999999999888843 1 123556678888888887665211 12
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHh
Q 000133 609 TMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVA 688 (2100)
Q Consensus 609 ~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~ 688 (2100)
.+..+++++++.+|..++..+ . .+.|..++.+++..|+..++..+
T Consensus 150 ~l~~l~~D~d~~VR~~aa~~l---~---------------~~ll~~ll~D~d~~VR~aaa~~l----------------- 194 (244)
T 1lrv_A 150 RLFRFMRDEDRQVRKLVAKRL---P---------------EESLGLMTQDPEPEVRRIVASRL----------------- 194 (244)
T ss_dssp GGGGTTTCSCHHHHHHHHHHS---C---------------GGGGGGSTTCSSHHHHHHHHHHC-----------------
T ss_pred HHHHHHcCCCHHHHHHHHHcC---C---------------HHHHHHHHcCCCHHHHHHHHHhC-----------------
Confidence 344677899999999988751 1 13455778999999999888652
Q ss_pred CCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHH
Q 000133 689 RDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAI 755 (2100)
Q Consensus 689 ~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL 755 (2100)
..+.|..++.++++.||..++..+. .+.|..+ ++++..+|..++..|
T Consensus 195 --~~~~L~~Ll~D~d~~VR~~aa~~l~-----------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 195 --RGDDLLELLHDPDWTVRLAAVEHAS-----------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp --CGGGGGGGGGCSSHHHHHHHHHHSC-----------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred --CHHHHHHHHcCCCHHHHHHHHHcCC-----------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 2356788899999999999988753 2455555 777777998887654
No 144
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=96.49 E-value=0.053 Score=63.57 Aligned_cols=179 Identities=18% Similarity=0.122 Sum_probs=130.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 000133 607 VETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAA 686 (2100)
Q Consensus 607 i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~ 686 (2100)
+..+++-|.+++.+.++.+...|..+...+.+....++..+++..|++...+.+.+++..+++|+.++..+....+.. +
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gv-v 198 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGV-V 198 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHH-H
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccch-h
Confidence 445667777888888999999999966556889999999999999999999999999999999999997664322222 3
Q ss_pred HhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcH-HHHHHHH----------cCcHHHHHHHHc---cCChhHHHHHH
Q 000133 687 VARDALSPLVVLAGSPVLEVAEQATCALANLILDSE-VSEKAIA----------EEIILPATRVLC---EGTISGKTLAA 752 (2100)
Q Consensus 687 ~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~-~~~~~v~----------~~~v~~L~~ll~---~~~~~~~~~Aa 752 (2100)
-....+..+..++.+....|...|...|..++...+ ...-+.. ..-+..|+..++ ..+.+++.+|.
T Consensus 199 s~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 199 AHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 356689999999999889999999999999984432 2222221 123788999998 56777899998
Q ss_pred HHHHHHHhcCccch---hHhhhhhccCcHHHHHHhhh
Q 000133 753 AAIARLLHSRKIDY---TITDCVNRAGTVLALVSFLE 786 (2100)
Q Consensus 753 ~aL~~l~~~~~~~~---~~~~~~~~~g~l~~li~~l~ 786 (2100)
.-+..++...+..+ ++.+.+...|.-..+.+.++
T Consensus 279 tLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~ 315 (339)
T 3dad_A 279 TLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLG 315 (339)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHS
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHh
Confidence 88888887665433 34444444443333333333
No 145
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=96.07 E-value=0.25 Score=57.95 Aligned_cols=146 Identities=14% Similarity=0.077 Sum_probs=109.1
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHH-h
Q 000133 404 LLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAIT-A 482 (2100)
Q Consensus 404 ~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~-~ 482 (2100)
.+++-|.+.+.+.++.+...|..+-.....+...++..+|+..|+......+...+.++..+|.+|-. +......++ .
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~-~v~Gm~gvvs~ 200 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLML-FVDGMLGVVAH 200 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTT-SHHHHHHHHHC
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHh-ccccccchhCC
Confidence 35566667778889999999998555557888999999999999999999999999999999999984 666655555 4
Q ss_pred cCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhC----------CcHHHHHHHhh---cCChhHHHHHHHH
Q 000133 483 AGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESA----------DAVPALLWLLK---NGSANGKEIAAKT 549 (2100)
Q Consensus 483 ~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~----------g~i~~Lv~lL~---~~~~~~~~~Aa~a 549 (2100)
...|..+..++.+....+...|...|..++..++.+...+.++ .-+..|+.+|+ +++..++..|...
T Consensus 201 ~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtL 280 (339)
T 3dad_A 201 SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTL 280 (339)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 4578888889998889999999999999998766554433221 11456666665 3445555554443
Q ss_pred H
Q 000133 550 L 550 (2100)
Q Consensus 550 L 550 (2100)
+
T Consensus 281 I 281 (339)
T 3dad_A 281 I 281 (339)
T ss_dssp H
T ss_pred H
Confidence 3
No 146
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=96.01 E-value=0.0038 Score=83.99 Aligned_cols=86 Identities=23% Similarity=0.392 Sum_probs=66.0
Q ss_pred cCCCceeeeeccchhhhhhCCCcceEEEec-CCC----CCcccc-ccccC-CCccccc-ccee-ccccCCCCCeEEEEee
Q 000133 1977 LPGTLVVIIKRGNNMKQSVGNPSVYCKLTL-GNT----PPRQTK-IVSTG-PNPEWEE-SFAW-SFEIPPKGQKLHISCK 2047 (2100)
Q Consensus 1977 i~~~~~~~~~r~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~-~~~~~-~~~~~~~-~~~~-~~~~~~~~~~~~~~~~ 2047 (2100)
.+|.|+|+|+++.++.. +...-+.++.+ |.+ ...+|| ||+++ .||+||| .|+| .+. .|.-..|.+.|+
T Consensus 676 ~~~~L~V~Visa~~L~~--~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~-~~el~~Lr~~V~ 752 (799)
T 2zkm_X 676 VATTLSITVISGQFLSE--RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKIL-MPELASLRVAVM 752 (799)
T ss_dssp TCEEEEEEEEEEESCCS--SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEES-SGGGCEEEEEEE
T ss_pred eeeeEEEEEEeccccCc--cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEc-cCCccEEEEEEE
Confidence 36789999999999875 24445666666 522 234799 88765 8999999 6988 665 355569999999
Q ss_pred cCCccCCcccceEEEEEeeEE
Q 000133 2048 NKSKMGKSSFGKVTIQIDRVV 2068 (2100)
Q Consensus 2048 ~~~~~~~~~~~~~~~~~~~~~ 2068 (2100)
+++ .+.+|.++|+++.+.
T Consensus 753 D~d---~d~iG~~~ipl~~L~ 770 (799)
T 2zkm_X 753 EEG---NKFLGHRIIPINALN 770 (799)
T ss_dssp ETT---TEEEEEEEEEGGGBC
T ss_pred EeC---CCccceEeeehhhcC
Confidence 985 677899999999875
No 147
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=95.83 E-value=2.1 Score=59.59 Aligned_cols=454 Identities=11% Similarity=0.036 Sum_probs=232.1
Q ss_pred CCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCC---CHHHHHHHHHHHHHhccCCccc----HHHHHhcC
Q 000133 412 ATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLS---SEQQQECSVALLCLLSNENDDS----KWAITAAG 484 (2100)
Q Consensus 412 ~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~---~~~v~~~A~~aL~nLs~~~~~~----~~~i~~~g 484 (2100)
.++..|..|-..|..+-.. + ++......++.++ ++.++..|+..|.+....-+.. ...-.+..
T Consensus 20 sd~~~r~~A~~~L~~~q~s-p---------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ 89 (980)
T 3ibv_A 20 VGPIIKQQATDFIGSLRSS-S---------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDS 89 (980)
T ss_dssp SCHHHHHHHHHHHHHHHHS-T---------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcC-h---------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHH
Confidence 3788888888888876654 2 4555666777654 6889999998888765422222 22333333
Q ss_pred ChHHHHHhcc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCCh-hHHHHHHHHHHHHhcC---CC-
Q 000133 485 GIPPLVQILE-SGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSA-NGKEIAAKTLNHLIHK---SD- 558 (2100)
Q Consensus 485 ~i~~Lv~lL~-~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~Aa~aL~~L~~~---~~- 558 (2100)
.+..+.+.-. ....-+|.+.+.+|..+....-... -.+.++.|+.++.++++ ........+|..+... ..
T Consensus 90 ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~----Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~ 165 (980)
T 3ibv_A 90 VWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSN----WNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLV 165 (980)
T ss_dssp HHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTT----CTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCS
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCccc----CchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhccc
Confidence 4444444211 2356788888888888875411111 12345555555554332 2223333333322211 00
Q ss_pred ----------------------CCcHHHHHHHhhc----CCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHH
Q 000133 559 ----------------------TATISQLTALLTS----DLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIK 612 (2100)
Q Consensus 559 ----------------------~~~i~~L~~lL~~----~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~ 612 (2100)
+...+....+|.. .+++++..+.+|++......+... +.+.+-++.+..
T Consensus 166 ~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~-----i~~~~ll~~l~~ 240 (980)
T 3ibv_A 166 LKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININL-----IVNEPCMNLLYS 240 (980)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHH-----HHCHHHHHHHHH
T ss_pred ccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHh-----hhcchHHHHHHH
Confidence 0012233333332 566677778888887766544332 233445777777
Q ss_pred HhcCCCHHHHHHHHHHHHHHhcCChh--hHHHHHhcCchHHHHHhhc--CCCHHHHHHHHHHHHHHhcC------Cc---
Q 000133 613 ILSSTKEETQAKSASALAGIFETRKD--LRESSIAVKTLWSVMKLLD--VGSECILVEASRCLAAIFLS------VR--- 679 (2100)
Q Consensus 613 lL~s~~~~~~~~Aa~aL~~L~~~~~~--~~~~~~~~g~v~~Lv~lL~--~~~~~v~~~aa~aL~~L~~~------~~--- 679 (2100)
++.+ ++++..|+.+|..+.....+ ....++..-.+...+..+. ..+.+..+..++.+..++.. .+
T Consensus 241 ~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~ 318 (980)
T 3ibv_A 241 FLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSEL 318 (980)
T ss_dssp HTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--
T ss_pred HcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCcccc
Confidence 7764 89999999999999875432 2112222111222222222 46666666555555443211 11
Q ss_pred --hh-HHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcC-----c----HHHHHHHHcCcHHHHHHHHccCCh--
Q 000133 680 --EN-REVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD-----S----EVSEKAIAEEIILPATRVLCEGTI-- 745 (2100)
Q Consensus 680 --~~-~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~-----~----~~~~~~v~~~~v~~L~~ll~~~~~-- 745 (2100)
+. .+..-.-.+.++.++..+.+++.++-..+..-+..++.. . ......+-..+++.+.+-++++++
T Consensus 319 ~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~ 398 (980)
T 3ibv_A 319 SPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQE 398 (980)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCC
T ss_pred chhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccc
Confidence 00 011011135788888889899988876665554444311 1 111222335666677777766432
Q ss_pred --------------hHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHH-hhh---hcccccchHhHHHHHHHHHHc
Q 000133 746 --------------SGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVS-FLE---SASGSVATSEALDALAILSRS 807 (2100)
Q Consensus 746 --------------~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~-~l~---s~~~~v~~~~al~~L~~L~~~ 807 (2100)
+.|+... .|............+. .-...+.+++. .+. +.+=... |-++.+|..+++.
T Consensus 399 ~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~---~~~~~i~~~l~~~l~~~~~~~W~~~-EaaL~~l~~iaE~ 473 (980)
T 3ibv_A 399 WDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSS---YMYSAITSSLSTAATLSPENSWQLI-EFALYETYIFGEG 473 (980)
T ss_dssp CCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHH---HHHHHHHHHHHHHTTSCHHHHHHHH-HHHHHHHHHTTTT
T ss_pred cccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHH---HHHHHHHHHHHHHhcccCCCCHHHH-HHHHHHHHHHHhh
Confidence 1233333 3333332211110000 00012222222 121 1111122 6677777766543
Q ss_pred CCCCCCCCcccceeeccCCCchhhhhhhc-----cCChhHHHHHHHHHHHHhcCCcccchhcccccccchHHHHHHHhh-
Q 000133 808 GGASGHVKPAWQVLAEFPKSITPIVSSIA-----DATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVIS- 881 (2100)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~l~~L~~~l~-----~~~~~~~~~a~~~L~~L~~~~~~~~g~~~~~~~~~~~~~~~~~l~- 881 (2100)
-.+.....+ ...-..|..++-+.+.+. ..+|.+|..+.+++.||+. -|.........+++.++.
T Consensus 474 i~~~~~~~~--~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~--------~~~~~~~~l~~~L~~ll~~ 543 (980)
T 3ibv_A 474 LRGPDAFFN--EVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYAS--------FFDYESAAIPALIEYFVGP 543 (980)
T ss_dssp CCSGGGTBC--SSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGG--------GGGTCCTTHHHHHHHHTST
T ss_pred ccccccccC--cccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHH--------HHhcCchhHHHHHHHHhcc
Confidence 221000000 001123344444444544 6789999999999999943 333344455555555555
Q ss_pred ----cCCcceecchhhHHHHHhhh
Q 000133 882 ----CTNPKVKIGGAALLICAAKV 901 (2100)
Q Consensus 882 ----s~~~~~r~~~~~~~~~~~~~ 901 (2100)
++++.+|..|++++..+.+.
T Consensus 544 ~gl~~~~~~V~~~a~~af~~f~~~ 567 (980)
T 3ibv_A 544 RGIHNTNERVRPRAWYLFYRFVKS 567 (980)
T ss_dssp TTTTCCCTTTHHHHHHHHHHHHHH
T ss_pred ccccCCChhHHHHHHHHHHHHHHH
Confidence 66788888888887777766
No 148
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Probab=95.69 E-value=0.0053 Score=81.96 Aligned_cols=87 Identities=17% Similarity=0.303 Sum_probs=65.7
Q ss_pred cCCCceeeeeccchhhhhhCCCcceEEEecCC-C-----CCccccccccC-CCcccccc-ceec-cccCCCCCeEEEEee
Q 000133 1977 LPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGN-T-----PPRQTKIVSTG-PNPEWEES-FAWS-FEIPPKGQKLHISCK 2047 (2100)
Q Consensus 1977 i~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~-~~~~~~~~-~~~~-~~~~~~~~~~~~~~~ 2047 (2100)
.|+.|+|+|+.+.++... ...-+..+.+.. + ..++||||++| .||+|||. |+|. +. .|.-..|.+.|+
T Consensus 648 ~~~~L~V~Visaq~L~~~--~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~-~pela~Lrf~V~ 724 (816)
T 3qr0_A 648 VAGTIEIKIISAQFLSDK--QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVV-LPDLAVVRIIVS 724 (816)
T ss_dssp CCEEEEEEEEEEECCCSS--CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEES-CGGGCEEEEEEE
T ss_pred cceEEEEEEEEcccCCCC--CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEcccc-CCCccEEEEEEE
Confidence 367899999999998753 334455555532 1 23479999875 99999998 9987 54 455579999999
Q ss_pred cCCccCCcccceEEEEEeeEEe
Q 000133 2048 NKSKMGKSSFGKVTIQIDRVVM 2069 (2100)
Q Consensus 2048 ~~~~~~~~~~~~~~~~~~~~~~ 2069 (2100)
+++ .+.+|.++|+++.+..
T Consensus 725 D~d---ddfiG~~~ipL~~L~~ 743 (816)
T 3qr0_A 725 EEN---GKFIGHRVMPLDGIKP 743 (816)
T ss_dssp ETT---SCEEEEEEEESTTCCC
T ss_pred ecC---CCeeeEEEEEHHHcCC
Confidence 974 6778999999998654
No 149
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Probab=95.63 E-value=0.0058 Score=82.03 Aligned_cols=85 Identities=18% Similarity=0.322 Sum_probs=64.4
Q ss_pred CCCceeeeeccchhhhhhCCCcceEEEecCC----C-CCccccccccC-CCccccc-cceec-cccCCCCCeEEEEeecC
Q 000133 1978 PGTLVVIIKRGNNMKQSVGNPSVYCKLTLGN----T-PPRQTKIVSTG-PNPEWEE-SFAWS-FEIPPKGQKLHISCKNK 2049 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~-~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~ 2049 (2100)
|..|+|+|+++.++... ...-+..+.+.. . ..++||||++| .||+|+| .|+|. +. -|.-..|.+.|+++
T Consensus 724 ~~~L~V~Visaq~L~~~--~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~-~pela~Lrf~V~D~ 800 (885)
T 3ohm_B 724 ANALRVKVISGQFLSDR--KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVV-LPTLASLRIAAFEE 800 (885)
T ss_dssp CEEEEEEEEEEESCCSS--CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEES-CGGGCEEEEEEEET
T ss_pred ceEEEEEEEEeccCccc--CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEE-cCCcCEEEEEEEcC
Confidence 33699999999998753 344555666532 1 13589999875 9999999 69998 54 45566999999998
Q ss_pred CccCCcccceEEEEEeeEE
Q 000133 2050 SKMGKSSFGKVTIQIDRVV 2068 (2100)
Q Consensus 2050 ~~~~~~~~~~~~~~~~~~~ 2068 (2100)
+ .+.+|.++|+++.+.
T Consensus 801 d---ddfiG~~~lpL~~L~ 816 (885)
T 3ohm_B 801 G---GKFVGHRILPVSAIR 816 (885)
T ss_dssp T---TEEEEEEEEETTTCC
T ss_pred C---ccEEeeEEEEHHHcC
Confidence 6 677899999998864
No 150
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=94.92 E-value=0.55 Score=54.00 Aligned_cols=99 Identities=10% Similarity=0.068 Sum_probs=78.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 000133 607 VETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAA 686 (2100)
Q Consensus 607 i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~ 686 (2100)
+|.|++-+.++.+.+|..+-..+..+....+. ..+.+.++..+.+.+.+++..++..+.++..... +
T Consensus 134 lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G------~ 200 (266)
T 2of3_A 134 VPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYYITNAG------I 200 (266)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHC------S
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC------C
Confidence 89999999999999999988888777653221 1367888889999999999999999998843211 1
Q ss_pred HhCCCh---HHHHHHhCCCCHHHHHHHHHHHHHHh
Q 000133 687 VARDAL---SPLVVLAGSPVLEVAEQATCALANLI 718 (2100)
Q Consensus 687 ~~~~~l---~~Lv~ll~~~~~evr~~aa~aL~~L~ 718 (2100)
....++ +.+.+++.+++.+||..|..++..+-
T Consensus 201 ~~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 201 SPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp GGGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred CccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 124578 99999999999999999998888664
No 151
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=94.56 E-value=0.33 Score=57.14 Aligned_cols=150 Identities=7% Similarity=0.078 Sum_probs=104.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCChh-----hHHHHHhcCchHHHHH-hhcCCCHHHHHHHHHHHHHHhcCCch
Q 000133 607 VETMIKILSSTKEETQAKSASALAGIFETRKD-----LRESSIAVKTLWSVMK-LLDVGSECILVEASRCLAAIFLSVRE 680 (2100)
Q Consensus 607 i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~-----~~~~~~~~g~v~~Lv~-lL~~~~~~v~~~aa~aL~~L~~~~~~ 680 (2100)
.+.+-..+.+.+..++..++.++..++..... ..........+|.|+. .+.+....++..+..++..++.....
T Consensus 57 ~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~ 136 (278)
T 4ffb_C 57 PTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS 136 (278)
T ss_dssp THHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc
Confidence 44556678899999999999999988753211 1122233456788885 47888888888888888877543211
Q ss_pred hHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhc--CcHH-HHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHH
Q 000133 681 NREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLIL--DSEV-SEKAIAEEIILPATRVLCEGTISGKTLAAAAIAR 757 (2100)
Q Consensus 681 ~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~--~~~~-~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~ 757 (2100)
.. ..++.+...+.+.++.++..+...|..++. +... .....-..+++.+..++.+.+..+|..|...+..
T Consensus 137 ~~-------~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ 209 (278)
T 4ffb_C 137 IT-------QSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVE 209 (278)
T ss_dssp SH-------HHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HH-------HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 11 135667778889999999999999998872 2211 1112223566778888999999999999999998
Q ss_pred HHhcCc
Q 000133 758 LLHSRK 763 (2100)
Q Consensus 758 l~~~~~ 763 (2100)
+-+..+
T Consensus 210 ly~~~G 215 (278)
T 4ffb_C 210 IYKVTG 215 (278)
T ss_dssp HHTC--
T ss_pred HHHHhC
Confidence 876544
No 152
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=94.03 E-value=0.33 Score=54.02 Aligned_cols=142 Identities=13% Similarity=0.114 Sum_probs=103.3
Q ss_pred hHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHH-HhhcCChhHHHHHHHHHHHHhc-CCCCCcHH
Q 000133 486 IPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLW-LLKNGSANGKEIAAKTLNHLIH-KSDTATIS 563 (2100)
Q Consensus 486 i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~Aa~aL~~L~~-~~~~~~i~ 563 (2100)
++....|..+...++|..|+..|..+ ... ...++.+.. +..+.++++++.++.++..++. ......++
T Consensus 73 ~~la~~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~~l~ 142 (240)
T 3l9t_A 73 KKLAFLAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKKALP 142 (240)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTTTHH
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHH
Confidence 34444566677899999999988877 311 114556665 5567899999999999999985 44445788
Q ss_pred HHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 000133 564 QLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESS 643 (2100)
Q Consensus 564 ~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~ 643 (2100)
.+.....+++..+|..|.+.+...+..... .......+|.|..+..+++..+|+.-++.|..+++.+++....+
T Consensus 143 ~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~------k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~ 216 (240)
T 3l9t_A 143 IIDEWLKSSNLHTRRAATEGLRIWTNRPYF------KENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIE 216 (240)
T ss_dssp HHHHHHHCSSHHHHHHHHHHTCSGGGSTTT------TTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHhhHHHhccchh------hcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHH
Confidence 899999999999999988886544432110 01112247777778889999999999999999999988764443
No 153
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=93.94 E-value=30 Score=48.07 Aligned_cols=223 Identities=15% Similarity=0.081 Sum_probs=124.8
Q ss_pred chHHHHHHHhcCCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCcccc
Q 000133 55 AVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKS-SSAEGQIAAAKTIYAVSQGGAKDYVGS 133 (2100)
Q Consensus 55 ~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~~~~~A~~aL~~Ls~~~~~~~~~~ 133 (2100)
.+..++..+-+++.+.|..|-..|..+-+.+ ++++.+..+|.+ .++.+|..|+..|.+.-...-+.-
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp---------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L--- 96 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHLKEHP---------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKIL--- 96 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTSSCCS---------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGS---
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHcCc---------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhC---
Confidence 3455566666677888888888888775544 446666666644 578899999999998665211000
Q ss_pred cchhccCChHHHHHHhhccC------CCcchHHHHHHHHHHHhccC-ChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHH
Q 000133 134 KIFSTEGVVPVLWEQLKNGL------KSGNVVDNLLTGALRNLSTS-TEGFWAATVQAGGIDILVKLLTLGQSSTQAHVC 206 (2100)
Q Consensus 134 ~~~~~~g~vp~L~~lL~~~~------~~~~~v~~~a~~aL~nL~~~-~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~ 206 (2100)
..-...+.-..+++++.... ..++.+....+.++..+... -+..|. ..++-++.++++ ++.......
T Consensus 97 ~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp-----~fi~dLv~~~~~-~~~~~~~~L 170 (1073)
T 3gjx_A 97 PRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWP-----TFISDIVGASRT-SESLCQNNM 170 (1073)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCT-----THHHHHHHHHHH-CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhcc-----HHHHHHHHHhCC-CHHHHHHHH
Confidence 00011122223444443311 12344445556666665422 123444 346677777754 445566677
Q ss_pred HHHHHHhhc--Cc------ch-----hhHHhh--hchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCC
Q 000133 207 FLLACMMEE--DV------SV-----CSRVLA--ADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNG 271 (2100)
Q Consensus 207 ~~L~~L~~~--~~------~~-----~~~i~~--~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~ 271 (2100)
.+|..+... +- .. +..+.. ...+..+...|....+.++...+..+|..+..--+ -..+++.+-
T Consensus 171 ~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~--i~~i~~~~l 248 (1073)
T 3gjx_A 171 VILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP--LGYIFETKL 248 (1073)
T ss_dssp HHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSH
T ss_pred HHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC--HHHhccchH
Confidence 777766633 10 00 111111 22344444555555556777888888888775332 235667777
Q ss_pred hHHHH-HhhcCCCcchhhhhhhHHHHHHHHHHHHHhhC
Q 000133 272 IPAMI-NATIAPSKEFMQGEYAQALQENAMCALANISG 308 (2100)
Q Consensus 272 i~~Lv-~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~ 308 (2100)
++.++ ..+.. +.++..|+.+|..+..
T Consensus 249 l~~L~~~~L~~-----------~~~r~aA~dcL~eIv~ 275 (1073)
T 3gjx_A 249 ISTLIYKFLNV-----------PMFRNVSLKCLTEIAG 275 (1073)
T ss_dssp HHHHHHHTSSS-----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-----------hHHHHHHHHHHHHHHh
Confidence 77773 55532 5688999999998765
No 154
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=93.93 E-value=1.1 Score=51.61 Aligned_cols=177 Identities=12% Similarity=0.152 Sum_probs=113.8
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHh----hCCCCHHHHHHHHHHHHHhccCC--cccHH
Q 000133 405 LVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISL----LGLSSEQQQECSVALLCLLSNEN--DDSKW 478 (2100)
Q Consensus 405 Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~l----L~s~~~~v~~~A~~aL~nLs~~~--~~~~~ 478 (2100)
+...|-+.|..-+..++..|......++. .+. ..+..+++. +.+.+..+...+..+|..+...- .+.+.
T Consensus 51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~~---~~~--~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~ 125 (266)
T 2of3_A 51 LMSQLFHKDFKQHLAALDSLVRLADTSPR---SLL--SNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPM 125 (266)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHHCHH---HHH--HTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhChH---HHH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence 44455566888888888888775544322 221 122223332 23668888877777776653110 11101
Q ss_pred HHHh-cCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCC
Q 000133 479 AITA-AGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKS 557 (2100)
Q Consensus 479 ~i~~-~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~ 557 (2100)
.-.+ .-.+|.|+.-++++.+.+|+.+-.++..++...+.. .+.+.+++.+++.+++++..++..+..+....
T Consensus 126 ~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~-------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~ 198 (266)
T 2of3_A 126 SQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL-------KMTPMLLDALKSKNARQRSECLLVIEYYITNA 198 (266)
T ss_dssp CHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH-------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence 1111 126799999999999999999888887776532222 25678888999999999999988888774311
Q ss_pred CCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchH---HHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 000133 558 DTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAV---ETMIKILSSTKEETQAKSASALAGIFE 634 (2100)
Q Consensus 558 ~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i---~~Lv~lL~s~~~~~~~~Aa~aL~~L~~ 634 (2100)
++....++ |.+..++.+.+..+|..|..++..+..
T Consensus 199 ------------------------------------------G~~~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 199 ------------------------------------------GISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp ------------------------------------------CSGGGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred ------------------------------------------CCCccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 11112346 888888889999999999888887765
Q ss_pred C
Q 000133 635 T 635 (2100)
Q Consensus 635 ~ 635 (2100)
.
T Consensus 237 ~ 237 (266)
T 2of3_A 237 F 237 (266)
T ss_dssp H
T ss_pred H
Confidence 4
No 155
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=93.91 E-value=0.25 Score=60.77 Aligned_cols=237 Identities=17% Similarity=0.120 Sum_probs=155.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc--C-chHHHHHhhcC------CC---HHHHHHHHHHHHHH
Q 000133 607 VETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAV--K-TLWSVMKLLDV------GS---ECILVEASRCLAAI 674 (2100)
Q Consensus 607 i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~--g-~v~~Lv~lL~~------~~---~~v~~~aa~aL~~L 674 (2100)
...|+.-|.+++.++|.-|+.+|..+.+............ . ++..++-+.-+ ++ ..|+..||++|+.+
T Consensus 176 cE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL 255 (800)
T 3oc3_A 176 FEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI 255 (800)
T ss_dssp THHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH
Confidence 5667777889999999999999999886532100000000 1 23333322211 11 25899999999999
Q ss_pred hcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHH
Q 000133 675 FLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAA 754 (2100)
Q Consensus 675 ~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~a 754 (2100)
.+.++. ...+..|+..+..+..++|+-+...|.++ .+.... -+++++.++..|++.++++|.-||.+
T Consensus 256 -~hLp~e-------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL---~DLL~~--Ld~Vv~aVL~GL~D~DDDVRAVAAet 322 (800)
T 3oc3_A 256 -YPLIGP-------NDIIEQLVGFLDSGDWQVQFSGLIALGYL---KEFVED--KDGLCRKLVSLLSSPDEDIKLLSAEL 322 (800)
T ss_dssp -TTTSCS-------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT---GGGCCC--HHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred -HhCChh-------HHHHHHHHhhcCCCCeeehhhhHHHHHHH---HHHHHH--HHHHHHHHHhhcCCcccHHHHHHHHH
Confidence 776543 34455555556889999999999999998 221111 36789999999999999999999999
Q ss_pred HHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcc-cccchHhHHHHHHHHHHcCCCCCCCCcccceeeccCCCchhhhh
Q 000133 755 IARLLHSRKIDYTITDCVNRAGTVLALVSFLESAS-GSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVS 833 (2100)
Q Consensus 755 L~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~-~~v~~~~al~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 833 (2100)
|.-+..... + ...+.-+-+.|...+ -....--.|..|+.|..-+... ...+.-++.|.-
T Consensus 323 LiPIA~p~~----l------~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a----------~~dp~LVPRL~P 382 (800)
T 3oc3_A 323 LCHFPITDS----L------DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL----------SIPPERLKDIFP 382 (800)
T ss_dssp HTTSCCSST----H------HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC----------CCCSGGGGGTGG
T ss_pred hhhhcchhh----H------HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc----------ccChHHHHHHHh
Confidence 987761111 1 112222334444444 3444466788888887655421 112366777777
Q ss_pred hhccCChhHHHHHHHHHHHHhcCCcccchhcccccccchHHHHHHHhhcCCcceec
Q 000133 834 SIADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKI 889 (2100)
Q Consensus 834 ~l~~~~~~~~~~a~~~L~~L~~~~~~~~g~~~~~~~~~~~~~~~~~l~s~~~~~r~ 889 (2100)
.+.+.-+.||..+.+.|..+. .|.....+|..++=.++++++.
T Consensus 383 FLRHtITSVR~AVL~TL~tfL-------------~~~~LRLIFQNILLE~neeIl~ 425 (800)
T 3oc3_A 383 CFTSPVPEVRTSILNMVKNLS-------------EESIDFLVAEVVLIEEKDEIRE 425 (800)
T ss_dssp GGTCSSHHHHHHHHHHTTTCC-------------CHHHHHHHHHHHHHCSCHHHHH
T ss_pred hhcCCcHHHHHHHHHHHHHHH-------------hhhHHHHHHHHHHhCCcHHHHH
Confidence 999999999999999997772 4555566677776666665554
No 156
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=93.74 E-value=30 Score=49.36 Aligned_cols=130 Identities=14% Similarity=0.078 Sum_probs=75.9
Q ss_pred CHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhh--cCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHH
Q 000133 67 SLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLL--KSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPV 144 (2100)
Q Consensus 67 ~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL--~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~ 144 (2100)
+.+.|.+|-..|..+-+.++ +++.+...| .+.+..+|..|+..|.+.....-.. -..-.+.++=..
T Consensus 26 ~~~~r~~Ae~~L~~~~~~p~---------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~---l~~e~k~~Ir~~ 93 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEKCP---------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNG---MSRLEKVYLKNS 93 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHCT---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGG---SCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhCch---------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhccc---CCHHHHHHHHHH
Confidence 56678888888887754432 344444434 3557888999999999866411000 000011122233
Q ss_pred HHHHhhccC----CCcchHHHHHHHHHHHhccC-ChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhh
Q 000133 145 LWEQLKNGL----KSGNVVDNLLTGALRNLSTS-TEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMME 214 (2100)
Q Consensus 145 L~~lL~~~~----~~~~~v~~~a~~aL~nL~~~-~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~ 214 (2100)
+++.+.... ..++.++..+..++..++.. -+..|. ..++.+++++++ ++..+..+..+|..+..
T Consensus 94 ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp-----~ll~~L~~~~~~-~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 94 VMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWP-----DMLIELDTLSKQ-GETQTELVMFILLRLAE 162 (1204)
T ss_dssp HHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCT-----THHHHHHHHHHT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccch-----HHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 555554321 13455777777777766532 124565 457788888876 56667788888887763
No 157
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=93.22 E-value=0.56 Score=55.16 Aligned_cols=191 Identities=15% Similarity=0.102 Sum_probs=126.3
Q ss_pred chHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhH--HHHHH-hCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcC--c-
Q 000133 648 TLWSVMKLLDVGSECILVEASRCLAAIFLSVRENR--EVAAV-ARDALSPLVVLAGSPVLEVAEQATCALANLILD--S- 721 (2100)
Q Consensus 648 ~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~--~~~~~-~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~--~- 721 (2100)
-+| |-.-|.+.+-..+..+...+..+....+... ...+. -....+.+...+.+.+..+...++.++..++.. .
T Consensus 11 klp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~ 89 (278)
T 4ffb_C 11 TLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASS 89 (278)
T ss_dssp CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC--
T ss_pred cCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhh
Confidence 355 6677889999999999999998876543211 11011 123456667888999999999999999988732 1
Q ss_pred ---HHHHHHHHcCcHHHHHHH-HccCChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcccccchHhH
Q 000133 722 ---EVSEKAIAEEIILPATRV-LCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEA 797 (2100)
Q Consensus 722 ---~~~~~~v~~~~v~~L~~l-l~~~~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~~~~a 797 (2100)
..........+++.|+.- +.+....++..|..++..+......... .+..++..+++.++.+. ..+
T Consensus 90 ~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~---------~~e~l~~~l~~Knpkv~-~~~ 159 (278)
T 4ffb_C 90 SLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ---------SVELVIPFFEKKLPKLI-AAA 159 (278)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH---------HHHHHGGGGGCSCHHHH-HHH
T ss_pred hcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH---------HHHHHHHHHhccCHHHH-HHH
Confidence 122233456777877764 6677777888888888877754433222 23345555665557776 888
Q ss_pred HHHHHHHHHcCCCCCCCCcccceeeccCCCchhhhhhhccCChhHHHHHHHHHHHHh
Q 000133 798 LDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLC 854 (2100)
Q Consensus 798 l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~a~~~L~~L~ 854 (2100)
+..|..++...... .. ......+..+..+..++.+.++.||+.|..++..++
T Consensus 160 l~~l~~~l~~fg~~-~~----~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly 211 (278)
T 4ffb_C 160 ANCVYELMAAFGLT-NV----NVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIY 211 (278)
T ss_dssp HHHHHHHHHHHTTT-TC----CHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cC----CchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 89998887653221 01 111223456777888999999999999999987774
No 158
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=92.29 E-value=0.4 Score=59.02 Aligned_cols=189 Identities=20% Similarity=0.213 Sum_probs=130.3
Q ss_pred chHHHHHHHHHHHhcc-cHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCchhhHHHHhcCcHHHHHHHh
Q 000133 1372 SPAQHSVVRALDKLVD-DEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDIL 1450 (2100)
Q Consensus 1372 ~~~~~~A~~aL~~L~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k~~i~~~~~i~~lv~~L 1450 (2100)
..+|+.|+.+|+.+-. ++. ..++..|+..+....-++|..++-.|..+ .+ -.. . -.+.++.++.-|
T Consensus 242 APVRETaAQtLGaL~hLp~e-------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-~D--LL~-~--Ld~Vv~aVL~GL 308 (800)
T 3oc3_A 242 APVRDAAAYLLSRIYPLIGP-------NDIIEQLVGFLDSGDWQVQFSGLIALGYL-KE--FVE-D--KDGLCRKLVSLL 308 (800)
T ss_dssp CHHHHHHHHHHHHHTTTSCS-------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-GG--GCC-C--HHHHHHHHHHHT
T ss_pred eehHHHHHHHHHHHHhCChh-------HHHHHHHHhhcCCCCeeehhhhHHHHHHH-HH--HHH-H--HHHHHHHHHhhc
Confidence 4689999999988831 222 34455555555788899999999999988 22 111 0 245678888889
Q ss_pred ccCChhHHHHHHHHHHHHHhccCCcccccccCchHHHHHHhccCCCCchhHhHHHHHHHHhhcCCCcccccccccCCChH
Q 000133 1451 HEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIE 1530 (2100)
Q Consensus 1451 ~~~~~~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~~~~~~~~l~ 1530 (2100)
.+.+|+++..||++|...+ ........+..+...|.+.++=.......+..|..|...+.... .....++
T Consensus 309 ~D~DDDVRAVAAetLiPIA------~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~----~dp~LVP 378 (800)
T 3oc3_A 309 SSPDEDIKLLSAELLCHFP------ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELS----IPPERLK 378 (800)
T ss_dssp TCSSHHHHHHHHHHHTTSC------CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCC----CCSGGGG
T ss_pred CCcccHHHHHHHHHhhhhc------chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccc----cChHHHH
Confidence 9999999999998885554 22335556666777777654323333445777888766664321 3347899
Q ss_pred hhhhccCCCCHHHHHHHHHHHHHhhccccccccccccCchH-HHHHHhccCCHHHHHHHHHHHH
Q 000133 1531 PLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIG-PLIRVLGSGIHILQQRAVKALV 1593 (2100)
Q Consensus 1531 ~Lv~~L~~~~~~vq~~a~~aL~~l~~~~~~~~~l~~~g~i~-~Lv~lL~s~~~~vr~~Al~AL~ 1593 (2100)
.|..+|...-+.||.+.+.+|..+... .++. ...++|=..+++++..+.++..
T Consensus 379 RL~PFLRHtITSVR~AVL~TL~tfL~~----------~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 379 DIFPCFTSPVPEVRTSILNMVKNLSEE----------SIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp GTGGGGTCSSHHHHHHHHHHTTTCCCH----------HHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHhhhcCCcHHHHHHHHHHHHHHHhh----------hHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999999999999999999999888721 1121 2223455789999999998886
No 159
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=91.12 E-value=2.3 Score=47.70 Aligned_cols=144 Identities=13% Similarity=0.130 Sum_probs=107.3
Q ss_pred HHHHHHHhhcCCchhhHHHHhhhcchhHHHHHHHhhcC----ChhhHHHHHHHHHHHhcC--cchHHHHHhhcChHHHHH
Q 000133 1292 AIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNC----SMELKGDAAELCGVLFGN--TRIRSTVAAARCVEPLVS 1365 (2100)
Q Consensus 1292 A~~aL~~La~~~~~~~~~~~~v~~gal~~L~~lL~~~~----~~~~~~~a~~~L~~L~~~--~~~r~~~~~~~~i~~Lv~ 1365 (2100)
|+..|--+|++++.|..+ +++.+.-.|..+|...+ -+-+|-..+.+++.+... +++....-.++.+|..+.
T Consensus 76 aLaLlQcvAshpetr~~F---l~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr 152 (268)
T 2fv2_A 76 ALALLQCVASHPETRSAF---LAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR 152 (268)
T ss_dssp HHHHHHHHHHCTTTHHHH---HHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHcCcchhhHH---HHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence 677778889999999988 57888888888887642 245777888888888754 455556667889999999
Q ss_pred HHhcCCchHHHHHHHHHHHhcccHHHHHHHHh--------cCCHHHHH-HhhcCCChhHHHHHHHHHHHhhcCCchhhHH
Q 000133 1366 LLVTEFSPAQHSVVRALDKLVDDEQLAELVAA--------HGAVIPLV-GLLYGRNYMLHEAISRALVKLGKDRPSCKLE 1436 (2100)
Q Consensus 1366 lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~--------~g~i~~L~-~lL~~~~~~vr~~A~~aL~~La~~~~~~k~~ 1436 (2100)
.++.+++-.+.-|...++++..++....-+.. ..++..++ .+.+++++++-+..+.|-..|+.+ +..++.
T Consensus 153 ime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn-~rar~a 231 (268)
T 2fv2_A 153 IMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN-PRAREA 231 (268)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC-HHHHHH
Confidence 99999999999999999998855443332211 11233333 344588999999999999999987 577777
Q ss_pred HHh
Q 000133 1437 MVK 1439 (2100)
Q Consensus 1437 i~~ 1439 (2100)
+..
T Consensus 232 L~~ 234 (268)
T 2fv2_A 232 LRQ 234 (268)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 160
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=89.02 E-value=3.4 Score=46.08 Aligned_cols=136 Identities=10% Similarity=0.050 Sum_probs=97.2
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHH-HhhcCCcchHHHHHHHHHHHHh-ccCchhHHHHhhhccch
Q 000133 529 PALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTA-LLTSDLPESKVYVLDALKSMLS-VVSFSDILREGSAANDA 606 (2100)
Q Consensus 529 ~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~-lL~~~~~~~~~~a~~aL~~l~~-~~~~~~~~~~~i~~~~~ 606 (2100)
+..-.+.++....++-.|+.+|+.+ . .....++.+.. +..+++..|++.+..+++.++. ..+ ...
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~-~-~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~p-----------e~~ 140 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYL-S-KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEY-----------KKA 140 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHT-T-TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCT-----------TTT
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhc-c-CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCH-----------HHH
Confidence 3344555667778899999988888 3 33455555655 5667889999999999887664 222 124
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCch
Q 000133 607 VETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRE 680 (2100)
Q Consensus 607 i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~ 680 (2100)
++.+.....+++..+|+.|...+.--+.. +... ..-.-++|.|..+..+++.-|++..+.+|..++...++
T Consensus 141 l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k--~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd 211 (240)
T 3l9t_A 141 LPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFK--ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPD 211 (240)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTT--TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhh--cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHH
Confidence 78888999999999999999887543322 1110 01112577888888999999999999999999877654
No 161
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=87.27 E-value=13 Score=43.71 Aligned_cols=203 Identities=12% Similarity=0.151 Sum_probs=150.8
Q ss_pred hhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChh----hHHHHHh-cCchHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 000133 601 SAANDAVETMIKILSSTKEETQAKSASALAGIFETRKD----LRESSIA-VKTLWSVMKLLDVGSECILVEASRCLAAIF 675 (2100)
Q Consensus 601 i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~----~~~~~~~-~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~ 675 (2100)
+...+.+..|+..|..-+-+.|+.++....++.+.... ..+-+.. ..++..|+..-...+ +...+-..|+-..
T Consensus 74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~d--iAl~~G~mLReci 151 (341)
T 1upk_A 74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPE--IALNCGIMLRECI 151 (341)
T ss_dssp HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTT--THHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccch--hHhHHHHHHHHHH
Confidence 34556788999999999999999999999999876432 2222322 234555555554433 4444444454443
Q ss_pred cCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcC-cHHHHHHHH---cCcHHHHHHHHccCChhHHHHH
Q 000133 676 LSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD-SEVSEKAIA---EEIILPATRVLCEGTISGKTLA 751 (2100)
Q Consensus 676 ~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~-~~~~~~~v~---~~~v~~L~~ll~~~~~~~~~~A 751 (2100)
.+ ....+. +...+.+..+.+.+..++-++...|..++..|... +....+++. +......-+++.+++--+++++
T Consensus 152 r~-e~la~~-iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQS 229 (341)
T 1upk_A 152 RH-EPLAKI-ILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS 229 (341)
T ss_dssp TS-HHHHHH-HHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred Hh-HHHHHH-HhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHH
Confidence 33 334444 56677788899999999999999999999999844 555566664 3566777788888877799999
Q ss_pred HHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcccccchHhHHHHHHHHHHcC
Q 000133 752 AAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSG 808 (2100)
Q Consensus 752 a~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~~~~al~~L~~L~~~~ 808 (2100)
.+-|++++-...+...+..|+....-+.-++.+|++.+..+. .+|..++--+..++
T Consensus 230 lKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq-~EAFhVFKvFVANP 285 (341)
T 1upk_A 230 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQ-FEAFHVFKVFVANP 285 (341)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHHHCS
T ss_pred HHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchh-hhhhhheeeeeeCC
Confidence 999999999999988999999989999999999999888887 88888877664443
No 162
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=86.32 E-value=14 Score=51.75 Aligned_cols=169 Identities=18% Similarity=0.196 Sum_probs=105.3
Q ss_pred chHHHHHHHhc----CCHHHHHHHHHHHHhh----hccchhhHHHHhcCChHHHHHhh----cCCCHHHHHHHHHHHHHH
Q 000133 55 AVPVLVSLLRS----GSLAVKIQAATVLGSL----CKENELRVKVLLGGCIPPLLGLL----KSSSAEGQIAAAKTIYAV 122 (2100)
Q Consensus 55 ~v~~L~~lL~~----~~~~v~~~aa~~L~~L----~~~~~~~~~i~~~g~i~~Lv~lL----~s~~~~~~~~A~~aL~~L 122 (2100)
.+..+..++.+ .++.++..+.-++++| |.++..+. ...++++...| ..++.+.+..+++||+|+
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~----~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~ 467 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCP----DELLQPLHDLLSQSSDRAKEEEIVLALKALGNA 467 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCC----GGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCC----HHHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Confidence 34555566654 3445555555555554 43322211 12245555444 567777888999999999
Q ss_pred hccCCCCcccccchhccCChHHHHHHhhcc---CCC-cchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhH--cc
Q 000133 123 SQGGAKDYVGSKIFSTEGVVPVLWEQLKNG---LKS-GNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLL--TL 196 (2100)
Q Consensus 123 s~~~~~~~~~~~~~~~~g~vp~L~~lL~~~---~~~-~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL--~s 196 (2100)
.. . ..++.|..++... ... ...++..|.++|+++....+... -+.+.++. ..
T Consensus 468 g~----p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v--------~~il~~i~~n~~ 525 (1056)
T 1lsh_A 468 GQ----P----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNVA 525 (1056)
T ss_dssp TC----G----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCTT
T ss_pred CC----h----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH--------HHHHHHHhcCCC
Confidence 86 1 2467777776431 111 22377778999999986543322 24677777 45
Q ss_pred CCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCC
Q 000133 197 GQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHC 259 (2100)
Q Consensus 197 ~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~ 259 (2100)
.++++|..|+..|. ...+ ....+..+...+....+.++..-....|.+++...
T Consensus 526 e~~EvRiaA~~~Lm---~t~P-------~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 526 IKSELRIRSCIVFF---ESKP-------SVALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp SCHHHHHHHHHHHH---HTCC-------CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred CChHHHHHHHHHHH---HHCc-------CHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence 67889988888772 2222 12346778888888777789988889999998743
No 163
>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}
Probab=85.59 E-value=0.23 Score=49.87 Aligned_cols=86 Identities=19% Similarity=0.296 Sum_probs=56.3
Q ss_pred ceEEEecCCCCC---ccc-cccccCCCccccccceeccccCCCCCeEEEEeecCCccCCcccceEEEEEeeEEee-----
Q 000133 2000 VYCKLTLGNTPP---RQT-KIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVML----- 2070 (2100)
Q Consensus 2000 ~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 2070 (2100)
-+|++....... -|| .--++...|+|++.|+=.+. .|..|+|.|+.+.. +-+..|||+++++...
T Consensus 34 PY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~---~Gr~l~i~Vfh~a~---~fVAn~tV~~edL~~~ck~~~ 107 (138)
T 2enj_A 34 PYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHIN---KGRVMQIIVKGKNV---DLISETTVELYSLAERCRKNN 107 (138)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCC---SSCEEEEEEECSSC---SCCEEEEEESHHHHHHHHHTT
T ss_pred ceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEE---CCeEEEEEEEcCCC---CeeeEEEEEHHHHHhhhccCC
Confidence 445444443322 334 33455679999999987766 78999999996555 6779999999999943
Q ss_pred cccccceeecCCCCCCCCcceEEEEEe
Q 000133 2071 GAVAGEYTLLPESKSGPSRNLEIEFLW 2097 (2100)
Q Consensus 2071 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2097 (2100)
|....-..|.| .|+.. +.++|
T Consensus 108 g~~e~WvdLeP---~Gkl~---v~i~~ 128 (138)
T 2enj_A 108 GKTEIWLELKP---QGRML---MNARY 128 (138)
T ss_dssp TCEEEEEECBS---SCEEE---EEEEE
T ss_pred CceEEEEeccc---CcEEE---EEEEE
Confidence 44444444555 44433 55555
No 164
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=85.54 E-value=33 Score=38.59 Aligned_cols=149 Identities=15% Similarity=0.161 Sum_probs=98.4
Q ss_pred HHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcc--hHHHHHHHHHHHhccCCh-hhHHHHHhcCCHHHH
Q 000133 114 AAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGN--VVDNLLTGALRNLSTSTE-GFWAATVQAGGIDIL 190 (2100)
Q Consensus 114 ~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~--~v~~~a~~aL~nL~~~~~-~~~~~i~~~g~v~~L 190 (2100)
.|...|.-+++ +...|..|.++...-.|...|...++..+ .++-.+++.++.|...++ +...-+.+.+.||..
T Consensus 75 naLaLlQcvAs----hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplC 150 (268)
T 2fv2_A 75 NALALLQCVAS----HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLC 150 (268)
T ss_dssp HHHHHHHHHHH----CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHc----CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHH
Confidence 34444556666 44457778888887778888887766654 366677788888875443 333335688999999
Q ss_pred HHhHccCCHHHHHHHHHHHHHHhhcCcch------hhHHhh-hchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhH
Q 000133 191 VKLLTLGQSSTQAHVCFLLACMMEEDVSV------CSRVLA-ADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDAR 263 (2100)
Q Consensus 191 v~lL~s~~~~v~~~a~~~L~~L~~~~~~~------~~~i~~-~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~ 263 (2100)
++.++.++.-.+..|+.++.++..++..- .+.+.. ...+..++.-+......-+.+....+-..|+. ++..+
T Consensus 151 Lrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsd-n~rar 229 (268)
T 2fv2_A 151 LRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSD-NPRAR 229 (268)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT-SHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc-CHHHH
Confidence 99999999999999999999888665521 111111 12333444444444446677777777777776 56555
Q ss_pred HHHH
Q 000133 264 REIA 267 (2100)
Q Consensus 264 ~~i~ 267 (2100)
.++.
T Consensus 230 ~aL~ 233 (268)
T 2fv2_A 230 EALR 233 (268)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 165
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=84.88 E-value=1.6e+02 Score=41.92 Aligned_cols=232 Identities=12% Similarity=0.032 Sum_probs=125.9
Q ss_pred hhHHHHHHHHHHHHccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHH--hcCCHHHHHHHHHHHHhhhc
Q 000133 6 GTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLL--RSGSLAVKIQAATVLGSLCK 83 (2100)
Q Consensus 6 ~~~~~v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL--~~~~~~v~~~aa~~L~~L~~ 83 (2100)
.....+.++++.+.++.+++..|..|-..|..+.+..+ +...+...| .+.+..+|..|+.+|-+..+
T Consensus 8 ~~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~-----------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~ 76 (1204)
T 3a6p_A 8 ALCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCP-----------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVK 76 (1204)
T ss_dssp HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCT-----------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCch-----------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 45677888888887766666678889888888765433 223333333 45577899999999998763
Q ss_pred c------chhhHHHHhcCChHHHHHhhcC---CCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCC
Q 000133 84 E------NELRVKVLLGGCIPPLLGLLKS---SSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLK 154 (2100)
Q Consensus 84 ~------~~~~~~i~~~g~i~~Lv~lL~s---~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~ 154 (2100)
. ++.|..+ +...+..+...-.. .+.-++...+.++..+.....++. . ...++.|+.++..
T Consensus 77 ~~W~~l~~e~k~~I-r~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~--W-----p~ll~~L~~~~~~--- 145 (1204)
T 3a6p_A 77 FRWNGMSRLEKVYL-KNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH--W-----PDMLIELDTLSKQ--- 145 (1204)
T ss_dssp HSGGGSCHHHHHHH-HHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT--C-----TTHHHHHHHHHHT---
T ss_pred HhcccCCHHHHHHH-HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc--c-----hHHHHHHHHHhcC---
Confidence 2 2233333 22223322222111 346677778888888877322211 1 3567777777754
Q ss_pred CcchHHHHHHHHHHHhccC---C---hhhHH-----HHHhcCCHHHHHH----hHcc-------------------CCHH
Q 000133 155 SGNVVDNLLTGALRNLSTS---T---EGFWA-----ATVQAGGIDILVK----LLTL-------------------GQSS 200 (2100)
Q Consensus 155 ~~~~v~~~a~~aL~nL~~~---~---~~~~~-----~i~~~g~v~~Lv~----lL~s-------------------~~~~ 200 (2100)
++.....+..+|..++.+ . ...++ .+.+. ++.++. ++.+ ++..
T Consensus 146 -~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~--~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (1204)
T 3a6p_A 146 -GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQN--MERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCR 222 (1204)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHH
Confidence 223344566777777532 0 01111 12222 334433 3322 1223
Q ss_pred HHHHHHHHHHHHhhcCcchhhHHhhh--chHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCC--hHhHHHHH
Q 000133 201 TQAHVCFLLACMMEEDVSVCSRVLAA--DATKQLLKLLGSGNEASVRAEAAGALKSLSDHC--KDARREIA 267 (2100)
Q Consensus 201 v~~~a~~~L~~L~~~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~--~~~~~~i~ 267 (2100)
+...+..++.+....-+ ...+.+. ..++.+..++.. .+++..|+.+|..+.... ++.+..+.
T Consensus 223 l~~~aL~~l~~~l~Wi~--~~~i~~~~~~ll~~l~~~l~~---~~lr~~A~ecL~~i~s~~~~~~~~~~li 288 (1204)
T 3a6p_A 223 VGVAALNTLAGYIDWVS--MSHITAENCKLLEILCLLLNE---QELQLGAAECLLIAVSRKGKLEDRKPLM 288 (1204)
T ss_dssp HHHHHHHHHHTTTTTSC--HHHHHTTTSHHHHHHHHGGGC---TTTHHHHHHHHHHHHTCCSCHHHHGGGG
T ss_pred HHHHHHHHHHHHHhccC--HHHHHhccchHHHHHHHHcCC---HHHHHHHHHHHHHHHhCCCChhhHHHHH
Confidence 44555555543332221 1222232 266777766553 368999999999998744 44444333
No 166
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=84.71 E-value=50 Score=46.17 Aligned_cols=179 Identities=15% Similarity=0.076 Sum_probs=110.6
Q ss_pred cCcHHHHHHHHhcC----CHHHHHHHHHHHHHhhcchhhhhhhhhcCChHHHHHhh----ccCChhhHHHHHHHHHHhhc
Q 000133 1230 FAAVSQLVAVLRLG----GRGARYSAAKALESLFSADHIRNAESARQAVQPLVEIL----NTGLEREQHAAIAALVRLLS 1301 (2100)
Q Consensus 1230 ~~al~~Li~~L~~~----~~~~r~~Aa~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL----~~~~~~~~~~A~~aL~~La~ 1301 (2100)
...+..+..++.++ ++..|..+..++++|....-..........++++.+.| ...+.+.+..++.+|+|++.
T Consensus 390 ~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~ 469 (1056)
T 1lsh_A 390 RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ 469 (1056)
T ss_dssp HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC
Confidence 34667777777653 34456667777777643111000112234466666554 45555566669999999992
Q ss_pred CCchhhHHHHhhhcchhHHHHHHHhhc----C--ChhhHHHHHHHHHHHhcCcchHHHHHhhcChHHHHHHHh--cCCch
Q 000133 1302 ENPSRALAVADVEMNAVDVLCRILSSN----C--SMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLV--TEFSP 1373 (2100)
Q Consensus 1302 ~~~~~~~~~~~v~~gal~~L~~lL~~~----~--~~~~~~~a~~~L~~L~~~~~~r~~~~~~~~i~~Lv~lL~--~~~~~ 1373 (2100)
..+++.|.+++... . ...++..|..+|..+.... ....-+.+..+.. ..+++
T Consensus 470 -------------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~-------p~~v~~il~~i~~n~~e~~E 529 (1056)
T 1lsh_A 470 -------------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-------PRKVQEIVLPIFLNVAIKSE 529 (1056)
T ss_dssp -------------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-------HHHHHHHHHHHHHCTTSCHH
T ss_pred -------------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc-------hHHHHHHHHHHhcCCCCChH
Confidence 34677788887531 1 2346667777777665321 1123345677774 46778
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHhcCCHHHHHHhhc-CCChhHHHHHHHHHHHhhcCCchhhHHH
Q 000133 1374 AQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLY-GRNYMLHEAISRALVKLGKDRPSCKLEM 1437 (2100)
Q Consensus 1374 ~~~~A~~aL~~L~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~vr~~A~~aL~~La~~~~~~k~~i 1437 (2100)
+|..|+..|..-.-+.. .+..+...+. +.+..|+......|.+++.....+...+
T Consensus 530 vRiaA~~~Lm~t~P~~~---------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P~~~~l 585 (1056)
T 1lsh_A 530 LRIRSCIVFFESKPSVA---------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPEFRDV 585 (1056)
T ss_dssp HHHHHHHHHHHTCCCHH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGGGHHH
T ss_pred HHHHHHHHHHHHCcCHH---------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCcchHHH
Confidence 99999988876543221 2556666666 5889999999999999998864444443
No 167
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=84.33 E-value=3.1 Score=51.00 Aligned_cols=124 Identities=16% Similarity=0.135 Sum_probs=100.0
Q ss_pred CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHH
Q 000133 658 VGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPAT 737 (2100)
Q Consensus 658 ~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~ 737 (2100)
.++...++-|++-|.....+.++.... ++..++.|..+.+..+|.+|...|..++.+ +. -..+...|+
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~------Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~-----i~kiaDvL~ 106 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADS------AINAQLDLCEDEDVSIRRQAIKELPQFATG-EN-----LPRVADILT 106 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHH------HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TC-----HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHH------HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hh-----hhhHHHHHH
Confidence 346789999999999999988876554 789999999999999999999999999876 32 257889999
Q ss_pred HHHccCChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcccccchHhHHHHHHHHH
Q 000133 738 RVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILS 805 (2100)
Q Consensus 738 ~ll~~~~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~~~~al~~L~~L~ 805 (2100)
++|+.++.......-++|..+++..+ .+++.++...+.+.++ ..++.++..|..-+
T Consensus 107 QlLqtdd~~E~~~V~~sL~sllk~Dp-----------k~tl~~lf~~i~~~~e-~~Rer~lkFi~~kl 162 (507)
T 3u0r_A 107 QLLQTDDSAEFNLVNNALLSIFKMDA-----------KGTLGGLFSQILQGED-IVRERAIKFLSTKL 162 (507)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHCH-----------HHHHHHHHHHHHHSCH-HHHHHHHHHHHHHG
T ss_pred HHHhccchHHHHHHHHHHHHHHhcCh-----------HHHHHHHHHHHcccch-HHHHHHHHHHHHHH
Confidence 99999998888888889999987655 4566677777776554 44488888887553
No 168
>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A
Probab=84.09 E-value=0.28 Score=48.55 Aligned_cols=61 Identities=18% Similarity=0.274 Sum_probs=45.8
Q ss_pred cccccCCCccccccceeccccCCCCCeEEEEeecCCccCCcccceEEEEEeeEEee-----cccccceeecC
Q 000133 2015 KIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVML-----GAVAGEYTLLP 2081 (2100)
Q Consensus 2015 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 2081 (2100)
.--++...|+|++.|+=.+. .|..|+|.|+.+.. +-+..|||+++++... |....-..|.|
T Consensus 48 ~~K~kT~~P~Wne~Fd~~V~---~Gr~l~i~Vfh~a~---~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP 113 (126)
T 1yrk_A 48 VQKKPTMYPEWKSTFDAHIY---EGRVIQIVLMRAAE---EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQP 113 (126)
T ss_dssp ECCSCCBCCCTTCEEEEECC---TTCEEEEEEEEETT---EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS
T ss_pred cccCCCCCcCccceEEeeee---CCEEEEEEEEcCCC---CeeeEEEEEHHHHHhhhccCCCceEEEEeccc
Confidence 44456789999999987766 78999999996555 6679999999999843 34433444544
No 169
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=83.53 E-value=8.9 Score=45.11 Aligned_cols=118 Identities=13% Similarity=-0.015 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHHHHHhhccCccchHHHHhC--CcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHH
Q 000133 412 ATNEVQEELVRALLKLCNNEGSLWRALQGR--EGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPL 489 (2100)
Q Consensus 412 ~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~--g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~L 489 (2100)
..+..+..+++++.|+..+. ..++.+... ..++.+...+.+++..++..++..+.|++.........-.....+..+
T Consensus 160 ~~p~n~ml~lR~l~NlF~~~-~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l 238 (304)
T 3ebb_A 160 GKPANQLLALRTFCNCFVGQ-AGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLI 238 (304)
T ss_dssp SCHHHHHHHHHHHHHGGGSH-HHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHccCCc-hhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHH
Confidence 35667999999999998873 445554432 234566666667799999999999999975211100000001123334
Q ss_pred HHhcc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHH
Q 000133 490 VQILE-SGSAKAKEDSASILRNLCNHSEDIRACVESADAVPA 530 (2100)
Q Consensus 490 v~lL~-~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~ 530 (2100)
.++++ ..+.+...++..+|++|...+++.+.....-|+...
T Consensus 239 ~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~ 280 (304)
T 3ebb_A 239 STILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQ 280 (304)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHH
Confidence 44443 348899999999999999765554444434444333
No 170
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=83.29 E-value=37 Score=39.84 Aligned_cols=172 Identities=10% Similarity=0.046 Sum_probs=96.9
Q ss_pred HHHHHHHhhcCHHHHhhhcccCcHHHHH----HHHh-cCCHHHHHHHHHHHHHhhcchhhhhhhhh--cCChHHHHHhhc
Q 000133 1210 ATDLLGILFSSAEIRRHESAFAAVSQLV----AVLR-LGGRGARYSAAKALESLFSADHIRNAESA--RQAVQPLVEILN 1282 (2100)
Q Consensus 1210 ~~~ll~~l~~~~~~~~~~~~~~al~~Li----~~L~-~~~~~~r~~Aa~aL~~L~~~~~~~~~i~~--~~~i~~Lv~lL~ 1282 (2100)
+-++++++..++.+.......+.-..++ ..+. .+.+..+..+.+.+.|++.....+..+.. ...++.+...+.
T Consensus 122 vLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~ 201 (304)
T 3ebb_A 122 ALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKS 201 (304)
T ss_dssp HHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGS
T ss_pred HHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhc
Confidence 3445555555555544333222222333 3332 23456799999999999998888776664 234455555555
Q ss_pred cCChhhHHHHHHHHHHhhcCCchhhHHHHhhhcchhHHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHhhcChHH
Q 000133 1283 TGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEP 1362 (2100)
Q Consensus 1283 ~~~~~~~~~A~~aL~~La~~~~~~~~~~~~v~~gal~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~~~~~~~i~~ 1362 (2100)
+.....+.+++..+.|++......... . -....+..+..++....|.+....++.++++|.....-...+.+.-.+..
T Consensus 202 ~~nknl~iA~ATl~~NlAv~~~~~~~~-~-~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~ 279 (304)
T 3ebb_A 202 GSNKNIHIALATLALNYSVCFHKDHNI-E-GKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDS 279 (304)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHSCCH-H-HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHhhcCCc-h-HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHH
Confidence 555666777888899998632111100 0 01124556666676666778888888899998865443334444434444
Q ss_pred HHHHHhcC-CchHHHHHHHHHH
Q 000133 1363 LVSLLVTE-FSPAQHSVVRALD 1383 (2100)
Q Consensus 1363 Lv~lL~~~-~~~~~~~A~~aL~ 1383 (2100)
.+..+.+. .+.....+++.+.
T Consensus 280 ~v~~~~~~~~~~kv~~~~~~~~ 301 (304)
T 3ebb_A 280 QIKKYSSVSEPAKVSECCRFIL 301 (304)
T ss_dssp HGGGGGGCCSSHHHHHHHHHHH
T ss_pred HHHHHHhCCCchhHHHHHHHHH
Confidence 44444443 3444444444443
No 171
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=82.76 E-value=8.1 Score=47.41 Aligned_cols=127 Identities=15% Similarity=0.174 Sum_probs=89.5
Q ss_pred HHHHHHHHHccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhcCCHHHHHHHHHHHHhhhccchhhHH
Q 000133 11 VAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVK 90 (2100)
Q Consensus 11 v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~~~~ 90 (2100)
+...-..+...+.++.+|+-|...+..+.+.-..... .++..++.++.+++..+|.+|.+.|-.+|++ +.-.+
T Consensus 28 ~~~y~~Il~~~kg~~k~K~LaaQ~I~kffk~FP~l~~------~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k 100 (507)
T 3u0r_A 28 KDAYQVILDGVKGGTKEKRLAAQFIPKFFKHFPELAD------SAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR 100 (507)
T ss_dssp HHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCGGGHH------HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH------HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh
Confidence 4444555555666778888888888888876554333 3688999999999999999999999999988 44344
Q ss_pred HHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHHHHH
Q 000133 91 VLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLL 163 (2100)
Q Consensus 91 i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a 163 (2100)
+ ...|+.+|..+++......-.+|..+-.. | ..+.+..|+..+..+ ++.+++.+
T Consensus 101 i-----aDvL~QlLqtdd~~E~~~V~~sL~sllk~---D--------pk~tl~~lf~~i~~~---~e~~Rer~ 154 (507)
T 3u0r_A 101 V-----ADILTQLLQTDDSAEFNLVNNALLSIFKM---D--------AKGTLGGLFSQILQG---EDIVRERA 154 (507)
T ss_dssp H-----HHHHHHHTTCCCHHHHHHHHHHHHHHHHH---C--------HHHHHHHHHHHHHHS---CHHHHHHH
T ss_pred H-----HHHHHHHHhccchHHHHHHHHHHHHHHhc---C--------hHHHHHHHHHHHccc---chHHHHHH
Confidence 4 66789999998888777777777776651 1 234555566665553 23455443
No 172
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=80.89 E-value=94 Score=36.50 Aligned_cols=204 Identities=12% Similarity=0.075 Sum_probs=137.6
Q ss_pred hhhcCChHHHHHhhccCChhhHHHHHHHHHHhhcCCch-hhHHHHhhhcchhHHHHHHHhhcCChhhHHHHHHHHHHHhc
Q 000133 1268 ESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPS-RALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFG 1346 (2100)
Q Consensus 1268 i~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~La~~~~~-~~~~~~~v~~gal~~L~~lL~~~~~~~~~~~a~~~L~~L~~ 1346 (2100)
+...+.+..|+..|..-+-+.++.+.....++-..... +...+.-+.. --+.|.-++....+.++.-.+-.+|+...+
T Consensus 74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~-~peil~~L~~gYe~~diAl~~G~mLRecir 152 (341)
T 1upk_A 74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT-QQNILFMLLKGYESPEIALNCGIMLRECIR 152 (341)
T ss_dssp HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT-CTHHHHHHHHGGGSTTTHHHHHHHHHHHHT
T ss_pred HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc-CHHHHHHHHHhhccchhHhHHHHHHHHHHH
Confidence 44557889999999998999999988877777653221 1111000111 122222223333455677777778888888
Q ss_pred CcchHHHHHhhcChHHHHHHHhcCCchHHHHHHHHHHHhcc-cHHHHHHHHhc---CCHHHHHHhhcCCChhHHHHHHHH
Q 000133 1347 NTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVD-DEQLAELVAAH---GAVIPLVGLLYGRNYMLHEAISRA 1422 (2100)
Q Consensus 1347 ~~~~r~~~~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~-~~~~~~~~~~~---g~i~~L~~lL~~~~~~vr~~A~~a 1422 (2100)
++.+...+-....+-.+...++.++-++-..|...+..+.. ........... .++...-.+|.+++.-+||.++..
T Consensus 153 ~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKL 232 (341)
T 1upk_A 153 HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKL 232 (341)
T ss_dssp SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 88777777777777788888888888888888888887773 22222222221 246677789999999999999999
Q ss_pred HHHhhcCCchhhHHHHh----cCcHHHHHHHhccCChhHHHHHHHHHHHHHhccC
Q 000133 1423 LVKLGKDRPSCKLEMVK----AGVIESVLDILHEAPDFLCSAFAELLRILTNNAG 1473 (2100)
Q Consensus 1423 L~~La~~~~~~k~~i~~----~~~i~~lv~~L~~~~~~~~~~aa~lL~~Ls~~~~ 1473 (2100)
|+.+--++ .+...|.. ..-+..+..+|.+....++-+|-.++.....++.
T Consensus 233 LgelLldr-~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~ 286 (341)
T 1upk_A 233 LGELLLDR-HNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPN 286 (341)
T ss_dssp HHHHHHSG-GGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHhCc-hHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCC
Confidence 99999885 66666643 6677888889998888877776655544444443
No 173
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=78.14 E-value=28 Score=40.19 Aligned_cols=114 Identities=15% Similarity=0.149 Sum_probs=86.7
Q ss_pred HHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHH
Q 000133 167 LRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRA 246 (2100)
Q Consensus 167 L~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~ 246 (2100)
|.||--.+.+...-.+..+||..+......++.++.+..+++|...+... .....--...+|.+++.+....+.++..
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDak--sL~~t~L~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAK--ALAKTPLENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCG--GGGTSCCTTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchH--HHhhccccccchHHHHHhccCCCcceEE
Confidence 34444344455555889999999999999999999999999886654322 2111112456899999998777789999
Q ss_pred HHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCC
Q 000133 247 EAAGALKSLSDHCKDARREIAGSNGIPAMINATIAP 282 (2100)
Q Consensus 247 ~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~ 282 (2100)
...+.|+|...+....+..-...|+|+.|-..+...
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky 379 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKY 379 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTS
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhC
Confidence 999999999998888888888899999888777543
No 174
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=76.92 E-value=28 Score=42.43 Aligned_cols=155 Identities=15% Similarity=0.219 Sum_probs=97.6
Q ss_pred cCChHHHHHhcc-----------CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHH
Q 000133 483 AGGIPPLVQILE-----------SGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLN 551 (2100)
Q Consensus 483 ~g~i~~Lv~lL~-----------~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~ 551 (2100)
.+|+..|++.|. ..+...+..+..+|..+..........+.....+..|+..+.+..+.++..+...|.
T Consensus 108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~ 187 (383)
T 3eg5_B 108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 187 (383)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 556777777663 123466778899999998753344444445778899999999999999999999999
Q ss_pred HHhcCCCC-CcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcC-CCHHHHHHHHHHH
Q 000133 552 HLIHKSDT-ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSS-TKEETQAKSASAL 629 (2100)
Q Consensus 552 ~L~~~~~~-~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s-~~~~~~~~Aa~aL 629 (2100)
.+|..+++ ++-+.+ .+|+-++.. .....-...++..|++ .+.+.+..+...+
T Consensus 188 ~lc~~~~~~gG~~~V---------------L~Al~~~~~-----------~~e~~RF~~lv~~L~~~~~~e~~~~~m~lI 241 (383)
T 3eg5_B 188 ALCILPQPEDMNERV---------------LEAMTERAE-----------MDEVERFQPLLDGLKSGTSIALKVGCLQLI 241 (383)
T ss_dssp HHHTCCSSTTHHHHH---------------HHHHHHHHH-----------HHTSCTTHHHHHTTSTTSCHHHHHHHHHHH
T ss_pred HHHhCcCcCCcHHHH---------------HHHHHHHHH-----------hCCCCcHHHHHHHHHccCcHHHHHHHHHHH
Confidence 99986642 223332 333332221 0112225667787776 5677776666666
Q ss_pred HHHhcCChh------hHHHHHhcCchHHHHHhhcCCCHHH
Q 000133 630 AGIFETRKD------LRESSIAVKTLWSVMKLLDVGSECI 663 (2100)
Q Consensus 630 ~~L~~~~~~------~~~~~~~~g~v~~Lv~lL~~~~~~v 663 (2100)
-.+....++ .+..+...|..+.+-++=...++..
T Consensus 242 N~li~~~~dl~~R~~lR~ef~~~Gl~~il~~lr~~~~~~L 281 (383)
T 3eg5_B 242 NALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDM 281 (383)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHTTSCCHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCChHHHHHHHhcCCChhH
Confidence 566665443 3455667777776666434445443
No 175
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=76.51 E-value=27 Score=39.41 Aligned_cols=143 Identities=12% Similarity=0.161 Sum_probs=89.4
Q ss_pred CHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCc-HHHHHHHhhcCCcc
Q 000133 497 SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTAT-ISQLTALLTSDLPE 575 (2100)
Q Consensus 497 ~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~-i~~L~~lL~~~~~~ 575 (2100)
+...+..+..+|..+..........+...+.+..|...|.+.++.++..+...|..+|..+++.+ -+.++..+
T Consensus 67 ~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al------ 140 (233)
T 2f31_A 67 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAM------ 140 (233)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHH------
T ss_pred hHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHH------
Confidence 34566778899999987533444444457788999999998999999999999999998665433 33333333
Q ss_pred hHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCChh------hHHHHHhcCc
Q 000133 576 SKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILS-STKEETQAKSASALAGIFETRKD------LRESSIAVKT 648 (2100)
Q Consensus 576 ~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~-s~~~~~~~~Aa~aL~~L~~~~~~------~~~~~~~~g~ 648 (2100)
-.+... .+..-...+++.++ +.+.+.+..+...+-.+....++ .|..+...|.
T Consensus 141 ---------~~~~~~-----------~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl 200 (233)
T 2f31_A 141 ---------TERAEM-----------DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGL 200 (233)
T ss_dssp ---------HHHHHH-----------HTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTH
T ss_pred ---------HHHHHh-----------CCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCh
Confidence 222111 01112456677676 45666766666555556665443 3455667777
Q ss_pred hHHHHHhhcCCCHHHHH
Q 000133 649 LWSVMKLLDVGSECILV 665 (2100)
Q Consensus 649 v~~Lv~lL~~~~~~v~~ 665 (2100)
.+.+-++=...++....
T Consensus 201 ~~il~~l~~~~~~~L~~ 217 (233)
T 2f31_A 201 HQVLQELREIENEDMKV 217 (233)
T ss_dssp HHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHhccCCHHHHH
Confidence 76666555555554433
No 176
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=75.96 E-value=2.6e+02 Score=38.84 Aligned_cols=219 Identities=8% Similarity=0.015 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHh-cCCHHHHHHHHHHHHhhhcc--
Q 000133 8 LASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLR-SGSLAVKIQAATVLGSLCKE-- 84 (2100)
Q Consensus 8 ~~~v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~-~~~~~v~~~aa~~L~~L~~~-- 84 (2100)
.+.+.+++..+..+ ++.+|..|-..|..+-+..+. ......+|. +.++.+|..|+.+|.+..+.
T Consensus 27 v~~Le~lv~~ly~p--~~~~r~qA~~~L~q~q~sp~a-----------w~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W 93 (1073)
T 3gjx_A 27 INLLDNVVNCLYHG--EGAQQRMAQEVLTHLKEHPDA-----------WTRVDTILEFSQNMNTKYYGLQILENVIKTRW 93 (1073)
T ss_dssp HHHHHHHHHTTTCS--SHHHHHHHHHHHHTSSCCSCH-----------HHHHTCC---CCSHHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHcCchH-----------HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhh
Confidence 45566666665544 456788888888777665442 233334443 45779999999999987642
Q ss_pred ----chhhHHHHhcCChHHHHHhhcC-----CCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCC
Q 000133 85 ----NELRVKVLLGGCIPPLLGLLKS-----SSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKS 155 (2100)
Q Consensus 85 ----~~~~~~i~~~g~i~~Lv~lL~s-----~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~ 155 (2100)
++.|..+ +...+..+...-.+ .++..+..-+.++..+....-++. . ...++.++..+...
T Consensus 94 ~~L~~e~~~~L-R~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~--W-----p~fi~dLv~~~~~~--- 162 (1073)
T 3gjx_A 94 KILPRNQCEGI-KKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKH--W-----PTFISDIVGASRTS--- 162 (1073)
T ss_dssp GGSCHHHHHHH-HHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTT--C-----TTHHHHHHHHHHHC---
T ss_pred hhCCHHHHHHH-HHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhh--c-----cHHHHHHHHHhCCC---
Confidence 2222222 22223333332221 234455556667777665211111 1 24566677766532
Q ss_pred cchHHHHHHHHHHHhccC---C--h----h----hHHHHHhcCCHHHHHHhHc-----cCCHHHHHHHHHHHHHHhhcCc
Q 000133 156 GNVVDNLLTGALRNLSTS---T--E----G----FWAATVQAGGIDILVKLLT-----LGQSSTQAHVCFLLACMMEEDV 217 (2100)
Q Consensus 156 ~~~v~~~a~~aL~nL~~~---~--~----~----~~~~i~~~g~v~~Lv~lL~-----s~~~~v~~~a~~~L~~L~~~~~ 217 (2100)
+......+..|..++.. . . . .+..+.+. ++.++.++. +.++++...+..+|.+....-+
T Consensus 163 -~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~--~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~ 239 (1073)
T 3gjx_A 163 -ESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNE--FSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP 239 (1073)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHT--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC
T ss_pred -HHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH--HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC
Confidence 12233455666666532 1 0 0 11123332 555555543 3577777888889988876643
Q ss_pred chhhHHhhhchHHHHH-HHhcCCCCHHHHHHHHHHHHHhhcC
Q 000133 218 SVCSRVLAADATKQLL-KLLGSGNEASVRAEAAGALKSLSDH 258 (2100)
Q Consensus 218 ~~~~~i~~~g~i~~Lv-~lL~~~~~~~v~~~Aa~aL~~Ls~~ 258 (2100)
...+++.+.++.|+ ..|.. ++.+..|+.+|..+...
T Consensus 240 --i~~i~~~~ll~~L~~~~L~~---~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 240 --LGYIFETKLISTLIYKFLNV---PMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp --THHHHSSSHHHHHHHHTSSS---HHHHHHHHHHHHHHHHS
T ss_pred --HHHhccchHHHHHHHHhcCC---hHHHHHHHHHHHHHHhc
Confidence 35567778888774 55543 57999999999998864
No 177
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=75.14 E-value=73 Score=36.25 Aligned_cols=162 Identities=15% Similarity=0.136 Sum_probs=99.0
Q ss_pred chhHHHHHHHHHHHHccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhcCCHHHHHHHHHHHHhhhcc
Q 000133 5 DGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKE 84 (2100)
Q Consensus 5 ~~~~~~v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~ 84 (2100)
.++.++|..++.+.+.. ++.+|-..+....+++-.++-. .+ ...++.++.+-.+.+.++|.+.+..+.+.|+.
T Consensus 11 ~~~~~~v~~lln~A~~~--~~~~kl~~L~qa~el~~~~dp~--ll---~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~ 83 (257)
T 3gs3_A 11 ATARAKVVDWCNELVIA--SPSTKCELLAKVQETVLGSCAE--LA---EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV 83 (257)
T ss_dssp HHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHTTTTGG--GH---HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhhhc--CcHHHHHHHHHHHHHHHccCHh--HH---HHHHHHHHHhccCChHHHHHHHHHHHHHHHHH
Confidence 45566777777765543 3368888999998877655411 11 24678888877778889999999999999843
Q ss_pred chhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHHHHHH
Q 000133 85 NELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLT 164 (2100)
Q Consensus 85 ~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~ 164 (2100)
.. -....+++.|..+|.++++.+...+..+..++- |..++.+......+...
T Consensus 84 k~----~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY-------------------~~~l~~i~~~~~~~~~~----- 135 (257)
T 3gs3_A 84 KV----ELLPHVINVVSMLLRDNSAQVIKRVIQACGSIY-------------------KNGLQYLCSLMEPGDSA----- 135 (257)
T ss_dssp CG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH-------------------HHHHHHHTTSSSCCHHH-----
T ss_pred HH----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-------------------HHHHHHHhcCCCCcchH-----
Confidence 32 123356888889998888877554443333222 23333333221111001
Q ss_pred HHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHh
Q 000133 165 GALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMM 213 (2100)
Q Consensus 165 ~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~ 213 (2100)
+..|..+.+ .=..++.+..+++..++..+.+.+....
T Consensus 136 ----------~~~W~~m~~--lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 136 ----------EQAWNILSL--IKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp ----------HHHHHHHHH--HHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHH--HHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 122332221 1235666778888999999888886655
No 178
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=73.61 E-value=91 Score=37.68 Aligned_cols=162 Identities=16% Similarity=0.174 Sum_probs=102.0
Q ss_pred chhHHHHHHHHHHHHccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhcCCHHHHHHHHHHHHhhhcc
Q 000133 5 DGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKE 84 (2100)
Q Consensus 5 ~~~~~~v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~ 84 (2100)
.+|.++|..++.+.+..+ +.+|-..+....+|.-.++- ..+ ...++.++.+-.+.+.++|.+.+..+.+.|+.
T Consensus 21 ~~~~~~v~~lln~A~~~~--~~~Kl~~L~q~~EL~l~~dp--sLl---~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~ 93 (386)
T 3o2t_A 21 MTTSERVVDLLNQAALIT--NDSKITVLKQVQELIINKDP--TLL---DNFLDEIIAFQADKSIEVRKFVIGFIEEACKR 93 (386)
T ss_dssp CCHHHHHHHHHHHHHHCC--STHHHHHHHHHHHHHHTTCG--GGG---GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhhhccC--hHHHHHHHHHHHHHHhccCH--HHH---HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH
Confidence 456788888888877643 35788999999987553321 121 35789999999999999999999999999853
Q ss_pred chhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHHHHHH
Q 000133 85 NELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLT 164 (2100)
Q Consensus 85 ~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~ 164 (2100)
+. .. ...+++.|..+|.++++.+...+..+..++- |..+..+......+...
T Consensus 94 ~~---el-~~~~l~~L~~LL~d~d~~V~K~~I~~~tslY-------------------pl~f~~i~~~~~~~~~~----- 145 (386)
T 3o2t_A 94 DI---EL-LLKLIANLNMLLRDENVNVVKKAILTMTQLY-------------------KVALQWMVKSRVISELQ----- 145 (386)
T ss_dssp CG---GG-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH-------------------HHHHHHHHHC-CCCHHH-----
T ss_pred HH---HH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-------------------HHHHHHHhcCCCcchhH-----
Confidence 21 11 2456888888998888877655544433322 22333332221111000
Q ss_pred HHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHh
Q 000133 165 GALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMM 213 (2100)
Q Consensus 165 ~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~ 213 (2100)
+..|..+.+ .-..++.++.+++..++..|.+++-...
T Consensus 146 ----------e~~W~~m~~--lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 146 ----------EACWDMVSA--MAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp ----------HHHHHHHHH--HHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHH--HHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 123333321 1235666778888899999888886655
No 179
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=71.22 E-value=20 Score=41.24 Aligned_cols=132 Identities=14% Similarity=0.133 Sum_probs=94.6
Q ss_pred HHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhC-CCCH
Q 000133 378 RTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLG-LSSE 456 (2100)
Q Consensus 378 ~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~-s~~~ 456 (2100)
++..-|.-|.+.+...+-+...+++..+...++.++.++.+..+..|...+....-.... -...+|.++..++ ++++
T Consensus 262 R~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~--L~e~LPFi~~~i~~h~eD 339 (619)
T 3c2g_A 262 RTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTP--LENILPFLLRLIEIHPDD 339 (619)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSC--CTTHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhcc--ccccchHHHHHhccCCCc
Confidence 334444444555555677778899999999999999999999999888877653221111 1245788888776 6789
Q ss_pred HHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCC-------CHHHHHHHHHHHHHH
Q 000133 457 QQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG-------SAKAKEDSASILRNL 511 (2100)
Q Consensus 457 ~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~-------~~~vre~A~~aL~~L 511 (2100)
++.+...+.|+|...+....++..+..|+|+.|-...... +..-+..||..++|-
T Consensus 340 dvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~ 401 (619)
T 3c2g_A 340 EVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC 401 (619)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred ceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence 9999999999999976667777788899999888765322 344455666666654
No 180
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=66.07 E-value=64 Score=39.32 Aligned_cols=144 Identities=13% Similarity=0.172 Sum_probs=91.3
Q ss_pred CHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCc-HHHHHHHhhcCCcc
Q 000133 497 SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTAT-ISQLTALLTSDLPE 575 (2100)
Q Consensus 497 ~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~-i~~L~~lL~~~~~~ 575 (2100)
+...+..++.+|..+..........+....++..|...+.+..+.++..+...|..+|..+++.+ -+.++.
T Consensus 71 d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~-------- 142 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLE-------- 142 (386)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHH--------
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHH--------
Confidence 35666778899999987544444455557789999999998899999999999999998665433 333333
Q ss_pred hHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCChh------hHHHHHhcCc
Q 000133 576 SKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILS-STKEETQAKSASALAGIFETRKD------LRESSIAVKT 648 (2100)
Q Consensus 576 ~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~-s~~~~~~~~Aa~aL~~L~~~~~~------~~~~~~~~g~ 648 (2100)
|+-++... ....-...+++.+. +.+.+.+..+...+-.+....++ .|..+...|.
T Consensus 143 -------Al~~~~~~-----------~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL 204 (386)
T 2bnx_A 143 -------AMTERAEM-----------DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGL 204 (386)
T ss_dssp -------HHHHHHHH-----------HTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTH
T ss_pred -------HHHHHHHh-----------CchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCh
Confidence 33222111 01112456777775 45667766666666566665553 4555677777
Q ss_pred hHHHHHhhcCCCHHHHHH
Q 000133 649 LWSVMKLLDVGSECILVE 666 (2100)
Q Consensus 649 v~~Lv~lL~~~~~~v~~~ 666 (2100)
.+.+-++-...++....+
T Consensus 205 ~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 205 HQVLQELREIENEDMKVQ 222 (386)
T ss_dssp HHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHhccCChhHHHH
Confidence 777665555556554433
No 181
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=61.50 E-value=2.2e+02 Score=34.45 Aligned_cols=138 Identities=21% Similarity=0.235 Sum_probs=90.7
Q ss_pred cccHHHHHHhhc-----------CCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHH
Q 000133 399 SEAKRLLVGLIT-----------MATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLC 467 (2100)
Q Consensus 399 ~g~i~~Lv~lL~-----------~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~ 467 (2100)
.+|+..|+..|. ..+...+..+++||+.+..........+.....+..|+..+.++++.++..+...|.
T Consensus 108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~ 187 (383)
T 3eg5_B 108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 187 (383)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 567777777764 124578889999999998775555555556677999999999999999999998888
Q ss_pred HhccCCc-cc-HHHH----------HhcCChHHHHHhccC-CCHHHHHHHHHHHHHHhcCChh------hHHHHHhCCcH
Q 000133 468 LLSNEND-DS-KWAI----------TAAGGIPPLVQILES-GSAKAKEDSASILRNLCNHSED------IRACVESADAV 528 (2100)
Q Consensus 468 nLs~~~~-~~-~~~i----------~~~g~i~~Lv~lL~~-~~~~vre~A~~aL~~L~~~~~~------~~~~i~~~g~i 528 (2100)
.+|.... ++ ...+ .+..-...++..|.. .+.+.+..+...+-.+....++ .|..+...|..
T Consensus 188 ~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~ 267 (383)
T 3eg5_B 188 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 267 (383)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHH
T ss_pred HHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChH
Confidence 8775332 22 2222 233456778888886 4666666555555555553332 34445556655
Q ss_pred HHHHHHhhc
Q 000133 529 PALLWLLKN 537 (2100)
Q Consensus 529 ~~Lv~lL~~ 537 (2100)
+.+-. ++.
T Consensus 268 ~il~~-lr~ 275 (383)
T 3eg5_B 268 QVLQE-LRE 275 (383)
T ss_dssp HHHHH-HTT
T ss_pred HHHHH-Hhc
Confidence 55444 554
No 182
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=49.67 E-value=50 Score=35.13 Aligned_cols=107 Identities=19% Similarity=0.195 Sum_probs=73.0
Q ss_pred HHHHHHHHHHccCCChhHHHHHHHHHHHHhhcc-hhhhhhhhccCCchHHHHHHHhcCCHHHHHHHHHHHHhhhccch--
Q 000133 10 SVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTR-ENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENE-- 86 (2100)
Q Consensus 10 ~v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~-~~~~~~i~~~~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~-- 86 (2100)
.+.++++..-+......+-...+ .+..+.+.. .+.+. ++..|.+.|+++++.++..|...|..+.+|-.
T Consensus 13 ~~~~~IekATs~~l~~~Dw~~il-eicD~I~~~~~~~k~-------A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~ 84 (171)
T 1juq_A 13 SLESWLNKATNPSNRQEDWEYII-GFCDQINKELEGPQI-------AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRR 84 (171)
T ss_dssp CHHHHHHHHTCTTCSSCCHHHHH-HHHHHHHHSTTHHHH-------HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH
T ss_pred cHHHHHHHHcCCCCCCcCHHHHH-HHHHHHHcCCccHHH-------HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH
Confidence 47788887766554444433333 344444433 34444 56788999999999999999999999887743
Q ss_pred hhHHHHhcCChHHHHHhhcC------CCHHHHHHHHHHHHHHhc
Q 000133 87 LRVKVLLGGCIPPLLGLLKS------SSAEGQIAAAKTIYAVSQ 124 (2100)
Q Consensus 87 ~~~~i~~~g~i~~Lv~lL~s------~~~~~~~~A~~aL~~Ls~ 124 (2100)
-+..+....-+..|++++.. .+..++..++..+..-+.
T Consensus 85 Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 85 FHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 34455555667778888752 357888888888887665
No 183
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=47.59 E-value=2.1e+02 Score=31.93 Aligned_cols=128 Identities=11% Similarity=0.071 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCh-hh-HHHH----------Hhc
Q 000133 579 YVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRK-DL-RESS----------IAV 646 (2100)
Q Consensus 579 ~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~-~~-~~~~----------~~~ 646 (2100)
.++.||..+ -+....+...+.+..++..|...|.+.++.++..+...|..+|..+. +. ...+ -+.
T Consensus 73 ~~l~CLkal---mn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~ 149 (233)
T 2f31_A 73 EIIRCLKAF---MNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEV 149 (233)
T ss_dssp HHHHHHHHH---TSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHH---hCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCc
Confidence 344454433 34455566667778889999999999999999999999988887643 12 2222 222
Q ss_pred CchHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCchh-----HHHHHHhCCChHHHHHHhCCCCHHHHHH
Q 000133 647 KTLWSVMKLLD-VGSECILVEASRCLAAIFLSVREN-----REVAAVARDALSPLVVLAGSPVLEVAEQ 709 (2100)
Q Consensus 647 g~v~~Lv~lL~-~~~~~v~~~aa~aL~~L~~~~~~~-----~~~~~~~~~~l~~Lv~ll~~~~~evr~~ 709 (2100)
....+++..+. +.+.+.+..+..-+-.+..+.++. -|..+...|..+.+-++-...++++..+
T Consensus 150 ~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Q 218 (233)
T 2f31_A 150 ERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQ 218 (233)
T ss_dssp CTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHHHHHH
T ss_pred chHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCHHHHHH
Confidence 36778888886 445566666666555555554432 2333666776666666655566665543
No 184
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=46.68 E-value=1.2e+02 Score=34.97 Aligned_cols=145 Identities=12% Similarity=0.119 Sum_probs=94.9
Q ss_pred HHHHHhcC------CchHHHHHHHHHHHhcccHHHHHHHHhcC--CHHHHHHhhcCCChhHHHHHHHHHHHhhcCCchhh
Q 000133 1363 LVSLLVTE------FSPAQHSVVRALDKLVDDEQLAELVAAHG--AVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCK 1434 (2100)
Q Consensus 1363 Lv~lL~~~------~~~~~~~A~~aL~~L~~~~~~~~~~~~~g--~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k 1434 (2100)
+..+++++ +.+....|+..|..++.+-.....+.... .+..|+ .....++.+|+.|..+++..-.++|...
T Consensus 27 ~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al 105 (315)
T 3qml_C 27 MRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVV 105 (315)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHH
Confidence 34455565 44567889999999998887777776533 333343 2234667899999999999999999988
Q ss_pred HHHHh--cCcHHHHHHHhcc-------CChhHHHHHHHHHHHHHhccCCcccccccCchHHHHHHhccCCCCchhHhHHH
Q 000133 1435 LEMVK--AGVIESVLDILHE-------APDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSAL 1505 (2100)
Q Consensus 1435 ~~i~~--~~~i~~lv~~L~~-------~~~~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~~~~~~~~~A~ 1505 (2100)
..+.+ ...+..+..-|.. ..+........++-.|...+... ...++..|+.++.....++..|..++
T Consensus 106 ~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F----~~~~m~~L~~ly~~~~~d~~~k~Kvl 181 (315)
T 3qml_C 106 EFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDL----PIYSTVVLQNVYERNNKDKQLQIKVL 181 (315)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC------CCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhh----hhccHHHHHHHHccCCCCHHHHHHHH
Confidence 88765 6666666655543 23333333444555555544211 23467888888876523488888888
Q ss_pred HHHHHhh
Q 000133 1506 QVLVNIL 1512 (2100)
Q Consensus 1506 ~~L~nL~ 1512 (2100)
..+..+-
T Consensus 182 ~li~d~f 188 (315)
T 3qml_C 182 ELISKIL 188 (315)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 8887764
No 185
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=39.95 E-value=1.3e+02 Score=31.19 Aligned_cols=109 Identities=7% Similarity=0.026 Sum_probs=74.5
Q ss_pred chhHHHHHHHhhc-CChhhHHHHHHHHHHHhcCcchHHHHHhhcChHHHHHHHhcCCchHHHHHHHHHHHhcc--cHHHH
Q 000133 1316 NAVDVLCRILSSN-CSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVD--DEQLA 1392 (2100)
Q Consensus 1316 gal~~L~~lL~~~-~~~~~~~~a~~~L~~L~~~~~~r~~~~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~--~~~~~ 1392 (2100)
+.++.+++-..+. ....--.....++..+-..+. +...++..|...|.+.++.+...|+..|-.+.. .....
T Consensus 10 ~~~~~~IekATs~~l~~~dw~~ileicD~I~~~~~-----~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh 84 (149)
T 3g2s_A 10 ETLEARINRATNPLNKELDWASINGFCEQLNEDFE-----GPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFH 84 (149)
T ss_dssp CCHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSS-----HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred CcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCC-----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHH
Confidence 3455555544433 111233445566666655443 344577788889999999999999988877763 45555
Q ss_pred HHHHhcCCHHHHHHhhcC------CChhHHHHHHHHHHHhhcC
Q 000133 1393 ELVAAHGAVIPLVGLLYG------RNYMLHEAISRALVKLGKD 1429 (2100)
Q Consensus 1393 ~~~~~~g~i~~L~~lL~~------~~~~vr~~A~~aL~~La~~ 1429 (2100)
..+....++..|+.++.. .+..|+++++..+...+..
T Consensus 85 ~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 85 DEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 556667788889989863 5789999999999888754
No 186
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=39.57 E-value=1.4e+02 Score=30.86 Aligned_cols=107 Identities=12% Similarity=0.041 Sum_probs=71.3
Q ss_pred HHHHHHHHHccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhcCCHHHHHHHHHHHHhhhccch--hh
Q 000133 11 VAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENE--LR 88 (2100)
Q Consensus 11 v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~--~~ 88 (2100)
+.++++..-+......+-...+.-+..+-....+.+. ++..|...|+++++.++..|...|..+.+|-. -+
T Consensus 2 ~~~~iekATs~~l~~~dw~~~leicD~I~~~~~~~k~-------a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh 74 (148)
T 1mhq_A 2 LELWLNKATDPSMSEQDWSAIQNFCEQVNTDPNGPTH-------APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFH 74 (148)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHHSSHHHHH-------HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHH-------HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHH
Confidence 4466776666554444433433333333333334444 57788999999999999999999999887633 34
Q ss_pred HHHHhcCChHHHHHhhcC------CCHHHHHHHHHHHHHHhc
Q 000133 89 VKVLLGGCIPPLLGLLKS------SSAEGQIAAAKTIYAVSQ 124 (2100)
Q Consensus 89 ~~i~~~g~i~~Lv~lL~s------~~~~~~~~A~~aL~~Ls~ 124 (2100)
..+....-+..|++++.. .+..++..++..+..-+.
T Consensus 75 ~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 75 SEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 556555667778888863 367888888887776665
No 187
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=38.89 E-value=1e+02 Score=31.48 Aligned_cols=88 Identities=9% Similarity=0.115 Sum_probs=62.5
Q ss_pred HHHHHHHHHhcCcchHHHHHhhcChHHHHHHHhcCCchHHHHHHHHHHHhcc--cHHHHHHHHhcCCHHHHHHhhcCCCh
Q 000133 1336 DAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVD--DEQLAELVAAHGAVIPLVGLLYGRNY 1413 (2100)
Q Consensus 1336 ~a~~~L~~L~~~~~~r~~~~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~--~~~~~~~~~~~g~i~~L~~lL~~~~~ 1413 (2100)
....++..+-..+. +...++..|...|.+.++.+...|+..|..+.. .......+....++..|..+++..++
T Consensus 25 ~ileicD~I~~~~~-----~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~ 99 (140)
T 3ldz_A 25 LILDICDKVGQSRT-----GPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHP 99 (140)
T ss_dssp HHHHHHHHHTTSTT-----HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHCCCc-----CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCH
Confidence 44455555544433 344567778888999999999999887766663 34445445556677778888877889
Q ss_pred hHHHHHHHHHHHhhc
Q 000133 1414 MLHEAISRALVKLGK 1428 (2100)
Q Consensus 1414 ~vr~~A~~aL~~La~ 1428 (2100)
.|+++++..+...+.
T Consensus 100 ~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 100 KVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887764
No 188
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=38.47 E-value=6.6e+02 Score=35.33 Aligned_cols=204 Identities=17% Similarity=0.100 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHh-CCCCHHHHHHHHHHHHHHhcCcHHHHHH----------HH
Q 000133 661 ECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLA-GSPVLEVAEQATCALANLILDSEVSEKA----------IA 729 (2100)
Q Consensus 661 ~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll-~~~~~evr~~aa~aL~~L~~~~~~~~~~----------v~ 729 (2100)
..+..+....+.++.... +...++.++=++ .+.+...+..+-..+.+-+...-...+. +-
T Consensus 324 k~i~eAwlK~I~~~~~~~---------~hk~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~it~~ll~~~f~~h~~vL 394 (1323)
T 3s4w_B 324 KTISEAWFKAIERIESAA---------EHKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCIQEQLLDSAFSTHYLVL 394 (1323)
T ss_dssp HHHHHHHHHHHHHGGGST---------TCCTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCccc---------ccchhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCCchHHHHHHHHHhhHHHH
Confidence 345555666666653221 234566655433 4445556777777777776332211111 22
Q ss_pred cCcHHHHH----HHHccCChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcccccchHhHHHHHHHHH
Q 000133 730 EEIILPAT----RVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILS 805 (2100)
Q Consensus 730 ~~~v~~L~----~ll~~~~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~~~~al~~L~~L~ 805 (2100)
.+..+.++ .++++.++.++.-+......+...... + ....++..|+.-..+....-+ ..|+++|..|.
T Consensus 395 ~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~---~----~qqeVl~~Lv~hi~sg~~~eV-d~ALdvL~~L~ 466 (1323)
T 3s4w_B 395 KDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDT---Y----CQQEVVGALVTHVCSGTEAEV-DTALDVLLELI 466 (1323)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCH---H----HHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccc---h----hHHHHHHHHHhhhcCCCcHHH-HHHHHHHHHHH
Confidence 34444444 556677788898888888888877643 1 224566677776666442223 45899999887
Q ss_pred HcCCCCCCCCcccceeeccCCCchhhhhhhccCChhHHHHHHHHHHHHhcCCcccchhcccccccchH---HHHHHHhhc
Q 000133 806 RSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCIS---SIARRVISC 882 (2100)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~g~~~~~~~~~~~---~~~~~~l~s 882 (2100)
..+.. ...-....+..+..++.+=++.-.++.+.+|..+.-+.... | ++.+.. =+++.-+.+
T Consensus 467 ~~~~~---------~l~~~a~~l~giLD~l~~l~~~QiRklf~iL~~laf~~~~~-~-----~~~i~ddl~ivIRKQLs~ 531 (1323)
T 3s4w_B 467 VLNAS---------AMRLNAAFVKGILDYLENMSPQQIRKIFCILSTLAFSQQPG-T-----SNHIQDDMHLVIRKQLSS 531 (1323)
T ss_dssp HHCHH---------HHHHTHHHHHGGGGGGGGCCHHHHHHHHHHHHHHHHHHCSS-C-----CCHHHHHHHHHHHHHHTC
T ss_pred hcCHH---------HHhHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCCCC-c-----chhhHHhHHHHHHHHHhC
Confidence 65432 11112334566667888888888888899999885322211 1 112221 134556777
Q ss_pred CCcceecchhhHHH
Q 000133 883 TNPKVKIGGAALLI 896 (2100)
Q Consensus 883 ~~~~~r~~~~~~~~ 896 (2100)
++.++|-.|.-..+
T Consensus 532 ~~~~~KriGIIGav 545 (1323)
T 3s4w_B 532 TVFKYKLIGIIGAV 545 (1323)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CchhhhhhhHHHHH
Confidence 77777765544433
No 189
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=38.44 E-value=61 Score=34.13 Aligned_cols=107 Identities=11% Similarity=0.142 Sum_probs=69.2
Q ss_pred HHHHHHHHHHccCCChhHHHHHHHHHHHHhhcc-hhhhhhhhccCCchHHHHHHHhcCCHHHHHHHHHHHHhhhccch--
Q 000133 10 SVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTR-ENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENE-- 86 (2100)
Q Consensus 10 ~v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~-~~~~~~i~~~~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~-- 86 (2100)
.+.++++..-+......+-...+. +.++++.. .+.+. ++..|.+.|+++++.++..|...|..+.+|-.
T Consensus 15 p~~~~IekATs~~~~~~Dw~~~le-icD~I~~~~~~~ke-------A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~ 86 (163)
T 1x5b_A 15 PFEQDVEKATNEYNTTEDWSLIMD-ICDKVGSTPNGAKD-------CLKAIMKRVNHKVPHVALQALTLLGACVANCGKI 86 (163)
T ss_dssp TTHHHHHHHTCTTCSSCCHHHHHH-HHHHHHHSSSHHHH-------HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHH
T ss_pred hHHHHHHHHcCCCCCCcCHHHHHH-HHHHHhCCCccHHH-------HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence 345777776654444344344443 33444433 34444 56788899999999999999999988887633
Q ss_pred hhHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHHhc
Q 000133 87 LRVKVLLGGCIPPLLGLLKS-SSAEGQIAAAKTIYAVSQ 124 (2100)
Q Consensus 87 ~~~~i~~~g~i~~Lv~lL~s-~~~~~~~~A~~aL~~Ls~ 124 (2100)
-+..+....-+..|++++.. .++.++..+...+..-+.
T Consensus 87 Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 87 FHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 34444444556667777764 567888888777776554
No 190
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=34.93 E-value=1.6e+02 Score=30.57 Aligned_cols=108 Identities=16% Similarity=0.100 Sum_probs=68.6
Q ss_pred HHHHHHHHHHccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHh-cCCHHHHHHHHHHHHhhhccch--
Q 000133 10 SVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLR-SGSLAVKIQAATVLGSLCKENE-- 86 (2100)
Q Consensus 10 ~v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~-~~~~~v~~~aa~~L~~L~~~~~-- 86 (2100)
.+.++++..-+......+-...+.-+..+-....+.+. ++..|.+.|+ ++++.++..|...|..+.+|-.
T Consensus 16 ~~~~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~-------a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~ 88 (157)
T 1elk_A 16 PVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKD-------ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHR 88 (157)
T ss_dssp HHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHH-------HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHH-------HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHH
Confidence 57788888776555444444444433333333334544 5678889997 5888899999999998887643
Q ss_pred hhHHHHhcCChHH-HHHhhcC---CCHHHHHHHHHHHHHHhc
Q 000133 87 LRVKVLLGGCIPP-LLGLLKS---SSAEGQIAAAKTIYAVSQ 124 (2100)
Q Consensus 87 ~~~~i~~~g~i~~-Lv~lL~s---~~~~~~~~A~~aL~~Ls~ 124 (2100)
-+..+....-+.. |++++.. .+..++..+...+..-+.
T Consensus 89 fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 89 FHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 3444544455665 6777732 345777777777765554
No 191
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=33.83 E-value=4.8e+02 Score=31.50 Aligned_cols=127 Identities=11% Similarity=0.075 Sum_probs=80.6
Q ss_pred HHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCh-hh-HHHH----------HhcC
Q 000133 580 VLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRK-DL-RESS----------IAVK 647 (2100)
Q Consensus 580 a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~-~~-~~~~----------~~~g 647 (2100)
++.||.. +-++...+...+.+..++..|...|.+.++.++..+...|..+|..+. +. ...+ .+..
T Consensus 78 ~l~CLka---lmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~ 154 (386)
T 2bnx_A 78 IIRCLKA---FMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVE 154 (386)
T ss_dssp HHHHHHH---HTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHH---HhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchh
Confidence 4444443 334444566667778889999999999999999999988888887653 11 2222 2233
Q ss_pred chHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCchh-----HHHHHHhCCChHHHHHHhCCCCHHHHHH
Q 000133 648 TLWSVMKLLD-VGSECILVEASRCLAAIFLSVREN-----REVAAVARDALSPLVVLAGSPVLEVAEQ 709 (2100)
Q Consensus 648 ~v~~Lv~lL~-~~~~~v~~~aa~aL~~L~~~~~~~-----~~~~~~~~~~l~~Lv~ll~~~~~evr~~ 709 (2100)
...+|+..+. +.+.+.+..+..-+-.+..+.++. -|..+...|..+.+-++-...++++..+
T Consensus 155 RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 155 RFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQ 222 (386)
T ss_dssp TTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred hHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence 6777888886 455566666666665555554442 2333666776666666655566666544
No 192
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=33.21 E-value=1.4e+02 Score=30.49 Aligned_cols=104 Identities=11% Similarity=0.104 Sum_probs=68.0
Q ss_pred HHHHHHHccCCChhHHHHHHHHHHHHhhcc-hhhhhhhhccCCchHHHHHHHhcCCHHHHHHHHHHHHhhhccchh--hH
Q 000133 13 QCIEQLRQSSSSVQEKEYSLRQLLELIDTR-ENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENEL--RV 89 (2100)
Q Consensus 13 ~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~-~~~~~~i~~~~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~--~~ 89 (2100)
++++..-+......+-...+. +.+..+.. .+.+. ++..|.+.|+++++.++..|...|..+.+|-.. +.
T Consensus 8 ~~iekAT~~~l~~~dw~~ile-icD~I~~~~~~~k~-------a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~ 79 (140)
T 3ldz_A 8 QDVEKATSEMNTAEDWGLILD-ICDKVGQSRTGPKD-------CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHL 79 (140)
T ss_dssp HHHHHHTCTTSSSCCHHHHHH-HHHHHTTSTTHHHH-------HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHcCCCCCCcCHHHHHH-HHHHHHCCCcCHHH-------HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHH
Confidence 566665554444344343333 44444443 34444 578889999999999999999988888776442 33
Q ss_pred HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 000133 90 KVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQ 124 (2100)
Q Consensus 90 ~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~ 124 (2100)
.+....-+..|+++++..++.++......+..-+.
T Consensus 80 evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 80 EVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 34344456667777777788888888877776654
No 193
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=32.77 E-value=1.5e+02 Score=31.35 Aligned_cols=88 Identities=8% Similarity=0.058 Sum_probs=64.6
Q ss_pred HHHHHHHHhcCcchHHHHHhhcChHHHHHHHhcCCchHHHHHHHHHHHhcc--cHHHHHHHHhcCCHHHHHHhhcC----
Q 000133 1337 AAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVD--DEQLAELVAAHGAVIPLVGLLYG---- 1410 (2100)
Q Consensus 1337 a~~~L~~L~~~~~~r~~~~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~--~~~~~~~~~~~g~i~~L~~lL~~---- 1410 (2100)
...++..+-..+. +...++..|...|.++++.+...|+..|-.+.. .......+....++..|+.++..
T Consensus 34 ileicD~I~~~~~-----~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~ 108 (171)
T 1juq_A 34 IIGFCDQINKELE-----GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLG 108 (171)
T ss_dssp HHHHHHHHHHSTT-----HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCC
T ss_pred HHHHHHHHHcCCc-----cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCC
Confidence 4455555443332 334567778888999999999999998888874 35566566677788889998862
Q ss_pred --CChhHHHHHHHHHHHhhcC
Q 000133 1411 --RNYMLHEAISRALVKLGKD 1429 (2100)
Q Consensus 1411 --~~~~vr~~A~~aL~~La~~ 1429 (2100)
.+..||++++..+...+..
T Consensus 109 ~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 109 DRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp TTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 4689999999999888755
No 194
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=32.63 E-value=1.7e+02 Score=30.22 Aligned_cols=74 Identities=11% Similarity=0.023 Sum_probs=59.0
Q ss_pred hhcChHHHHHHHhcCCchHHHHHHHHHHHhcc--cHHHHHHHHhcCCHHHHHHhhcC------CChhHHHHHHHHHHHhh
Q 000133 1356 AARCVEPLVSLLVTEFSPAQHSVVRALDKLVD--DEQLAELVAAHGAVIPLVGLLYG------RNYMLHEAISRALVKLG 1427 (2100)
Q Consensus 1356 ~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~--~~~~~~~~~~~g~i~~L~~lL~~------~~~~vr~~A~~aL~~La 1427 (2100)
...++..|...|+++++.+...|+..|-.+.. .......+....++..|+.++.. .+..|+++++..+...+
T Consensus 36 ~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 36 PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 44567778888999999999999998887773 45666666677888899999874 47899999999988877
Q ss_pred cC
Q 000133 1428 KD 1429 (2100)
Q Consensus 1428 ~~ 1429 (2100)
..
T Consensus 116 ~~ 117 (148)
T 1mhq_A 116 VW 117 (148)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 195
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=32.14 E-value=1.8e+02 Score=30.01 Aligned_cols=108 Identities=16% Similarity=0.036 Sum_probs=71.6
Q ss_pred HHHHHHHHHHccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhcCCHHHHHHHHHHHHhhhccchh--
Q 000133 10 SVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENEL-- 87 (2100)
Q Consensus 10 ~v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~-- 87 (2100)
.+.++++..-+......+-...+.-+..+-....+.+. ++..|...|++.++.++..|...|..+.+|-..
T Consensus 11 ~~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~-------a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~f 83 (149)
T 3g2s_A 11 TLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPL-------ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRF 83 (149)
T ss_dssp CHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHH-------HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHH
T ss_pred cHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHH-------HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHH
Confidence 46677777666554444433333333333333334544 577889999999999999999999988876443
Q ss_pred hHHHHhcCChHHHHHhhcC------CCHHHHHHHHHHHHHHhc
Q 000133 88 RVKVLLGGCIPPLLGLLKS------SSAEGQIAAAKTIYAVSQ 124 (2100)
Q Consensus 88 ~~~i~~~g~i~~Lv~lL~s------~~~~~~~~A~~aL~~Ls~ 124 (2100)
+..+....-+..|++++.. .+..++......+..-+.
T Consensus 84 h~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 84 HDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 3445555566778888853 567888888877776665
No 196
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=31.51 E-value=1.7e+02 Score=30.77 Aligned_cols=74 Identities=9% Similarity=0.162 Sum_probs=56.7
Q ss_pred hhcChHHHHHHHhcCCchHHHHHHHHHHHhcc--cHHHHHHHHhcCCHHHHHHhhcC-CChhHHHHHHHHHHHhhcC
Q 000133 1356 AARCVEPLVSLLVTEFSPAQHSVVRALDKLVD--DEQLAELVAAHGAVIPLVGLLYG-RNYMLHEAISRALVKLGKD 1429 (2100)
Q Consensus 1356 ~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~--~~~~~~~~~~~g~i~~L~~lL~~-~~~~vr~~A~~aL~~La~~ 1429 (2100)
...++..|...|.+.++.+...|+..|-.+.. .......+....++..|+.++.. .++.|+++++..+...+..
T Consensus 50 ~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 50 AKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 34567778888999999999999988877774 45555556566778888888874 6789999999988777643
No 197
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=30.82 E-value=4.4e+02 Score=29.83 Aligned_cols=90 Identities=10% Similarity=0.115 Sum_probs=61.0
Q ss_pred hhhHHHHHHHHHHhhcCCchhhHHHHhhhcchhHHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHhhcChHHHHH
Q 000133 1286 EREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVS 1365 (2100)
Q Consensus 1286 ~~~~~~A~~aL~~La~~~~~~~~~~~~v~~gal~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~~~~~~~i~~Lv~ 1365 (2100)
++.+-..+.-..++...++.. .. ...++.++.+..+ ++.+++++.+..+...+.... ......++.|..
T Consensus 29 ~~~kl~~L~qa~el~~~~dp~-ll-----~~~l~~il~~~~~-~~~~vrk~~~~Fi~e~~~~k~----~l~~~~l~~L~~ 97 (257)
T 3gs3_A 29 PSTKCELLAKVQETVLGSCAE-LA-----EEFLESVLSLAHD-SNMEVRKQVVAFVEQVCKVKV----ELLPHVINVVSM 97 (257)
T ss_dssp HHHHHHHHHHHHHHHTTTTGG-GH-----HHHHHHHHGGGGC-SCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHccCHh-HH-----HHHHHHHHHhccC-ChHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 344555677777766554332 22 3577777776545 678999999999988874321 123457788888
Q ss_pred HHhcCCchHHHHHHHHHHHhc
Q 000133 1366 LLVTEFSPAQHSVVRALDKLV 1386 (2100)
Q Consensus 1366 lL~~~~~~~~~~A~~aL~~L~ 1386 (2100)
+++++++.+...++.+...+.
T Consensus 98 Ll~d~d~~V~K~~I~~~~~iY 118 (257)
T 3gs3_A 98 LLRDNSAQVIKRVIQACGSIY 118 (257)
T ss_dssp HTTCSCHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHH
Confidence 999989988888777766553
No 198
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=29.38 E-value=1.4e+02 Score=33.11 Aligned_cols=108 Identities=11% Similarity=0.093 Sum_probs=69.5
Q ss_pred hhHHHHHHHhhcC-ChhhHHHHHHHHHHHhcCcchHHHHHhhcChHHHHHHHhcCCchHHHHHHHHHHHhcc--cHHHHH
Q 000133 1317 AVDVLCRILSSNC-SMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVD--DEQLAE 1393 (2100)
Q Consensus 1317 al~~L~~lL~~~~-~~~~~~~a~~~L~~L~~~~~~r~~~~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~--~~~~~~ 1393 (2100)
.++.+++-..+.. .+.--.....++..+-..++ +...++..|...|.+.++.+...|+..|..+.. ......
T Consensus 8 ~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~~-----~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~ 82 (226)
T 3zyq_A 8 TFERLLDKATSQLLLETDWESILQICDLIRQGDT-----QAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHD 82 (226)
T ss_dssp HHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTSS-----CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred hHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCc-----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHH
Confidence 4445554444331 11223344455555544333 234567778888999999999999998877773 344445
Q ss_pred HHHhcCCHHHHHHhhc-CCChhHHHHHHHHHHHhhcC
Q 000133 1394 LVAAHGAVIPLVGLLY-GRNYMLHEAISRALVKLGKD 1429 (2100)
Q Consensus 1394 ~~~~~g~i~~L~~lL~-~~~~~vr~~A~~aL~~La~~ 1429 (2100)
.+....++..|..+++ ..+..|+++++..+...+..
T Consensus 83 eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 119 (226)
T 3zyq_A 83 EVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHA 119 (226)
T ss_dssp HHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 5556666777777776 46788999999988877643
No 199
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=26.73 E-value=1.3e+03 Score=32.58 Aligned_cols=212 Identities=11% Similarity=0.127 Sum_probs=111.6
Q ss_pred HHHHhhcC---ChhHHHHHHHHHHHHhcCCCCCcHHHHHHH-hhcCCcchHHHHHHHHHHHHhccCch-hHHHHhhhc--
Q 000133 531 LLWLLKNG---SANGKEIAAKTLNHLIHKSDTATISQLTAL-LTSDLPESKVYVLDALKSMLSVVSFS-DILREGSAA-- 603 (2100)
Q Consensus 531 Lv~lL~~~---~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~l-L~~~~~~~~~~a~~aL~~l~~~~~~~-~~~~~~i~~-- 603 (2100)
+++.++++ +..+-+.-..++.+.....+...+.-++=+ +.+.....+..+...+.+-....... ..++..+..
T Consensus 312 ild~lks~l~~~k~i~eAwlK~I~~~~~~~~hk~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~it~~ll~~~f~~h~ 391 (1323)
T 3s4w_B 312 VFDVIKSAIRYEKTISEAWFKAIERIESAAEHKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCIQEQLLDSAFSTHY 391 (1323)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHGGGSTTCCTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHhCCCcccccchhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCCchHHHHHHHHHhhH
Confidence 44445442 344444445555555444444455443322 23333334555555555544332211 112221111
Q ss_pred ---cchHHHHH---H-HhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 000133 604 ---NDAVETMI---K-ILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFL 676 (2100)
Q Consensus 604 ---~~~i~~Lv---~-lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~ 676 (2100)
..-.+.++ + ++++.++.++.-+...-..++...+.+. +..++..|+....+++..-...|+..|..|+.
T Consensus 392 ~vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~~~----qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~ 467 (1323)
T 3s4w_B 392 LVLKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDTYC----QQEVVGALVTHVCSGTEAEVDTALDVLLELIV 467 (1323)
T ss_dssp HHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCHHH----HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccchh----HHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHh
Confidence 11133333 3 6788999999999988888877654432 23456677777777777667778999988876
Q ss_pred CCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcC-cHHHHHHHHcCcHHHHHHHHccCChhHHH
Q 000133 677 SVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD-SEVSEKAIAEEIILPATRVLCEGTISGKT 749 (2100)
Q Consensus 677 ~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~-~~~~~~~v~~~~v~~L~~ll~~~~~~~~~ 749 (2100)
..+.. . ....-.+..++..+.+-+..--......|+.++.+ .......+.++.--.+-+.+.+.+.+.++
T Consensus 468 ~~~~~--l-~~~a~~l~giLD~l~~l~~~QiRklf~iL~~laf~~~~~~~~~i~ddl~ivIRKQLs~~~~~~Kr 538 (1323)
T 3s4w_B 468 LNASA--M-RLNAAFVKGILDYLENMSPQQIRKIFCILSTLAFSQQPGTSNHIQDDMHLVIRKQLSSTVFKYKL 538 (1323)
T ss_dssp HCHHH--H-HHTHHHHHGGGGGGGGCCHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHTCSSHHHHH
T ss_pred cCHHH--H-hHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCCCCcchhhHHhHHHHHHHHHhCCchhhhh
Confidence 54331 1 11122455556666666655445557777777622 11111123344444555666666666544
No 200
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=23.17 E-value=1.8e+02 Score=32.31 Aligned_cols=108 Identities=19% Similarity=0.111 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHccCCChhHHHHHHHHHHHHhhcc-hhhhhhhhccCCchHHHHHHHhcCCHHHHHHHHHHHHhhhccchh
Q 000133 9 ASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTR-ENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENEL 87 (2100)
Q Consensus 9 ~~v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~-~~~~~~i~~~~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~ 87 (2100)
....++++...+......+-...+ .+.++++.. .+++. ++..|.+.|+++++.++..|...|..+.+|-..
T Consensus 7 ~~~~~~i~kAT~~~~~~~dw~~il-eicD~I~~~~~~~k~-------a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~ 78 (226)
T 3zyq_A 7 GTFERLLDKATSQLLLETDWESIL-QICDLIRQGDTQAKY-------AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQ 78 (226)
T ss_dssp CHHHHHHHHHTCTTCSSCCHHHHH-HHHHHHHTTSSCHHH-------HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCH
T ss_pred chHHHHHHHHcCCCCCCcCHHHHH-HHHHHHhCCCccHHH-------HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcch
Confidence 355667787766554444434433 344444443 34444 577899999999999999999999998876443
Q ss_pred --hHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHHhc
Q 000133 88 --RVKVLLGGCIPPLLGLLKS-SSAEGQIAAAKTIYAVSQ 124 (2100)
Q Consensus 88 --~~~i~~~g~i~~Lv~lL~s-~~~~~~~~A~~aL~~Ls~ 124 (2100)
+..+....-+..|+++++. .+.+++...+..+..-+.
T Consensus 79 ~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 79 TVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 3444444545566777653 557788878777776664
No 201
>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}
Probab=21.52 E-value=71 Score=35.15 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=31.2
Q ss_pred ccccCCCccccccceeccccCCCCC--eE-----EEEeecCCccCCcccceEEEEEe
Q 000133 2016 IVSTGPNPEWEESFAWSFEIPPKGQ--KL-----HISCKNKSKMGKSSFGKVTIQID 2065 (2100)
Q Consensus 2016 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~ 2065 (2100)
|+-|+.+|.|.|+|.-.+- +..-+ +| |++|+.|..-....||..-++|-
T Consensus 83 V~YHnk~P~w~EtIKi~LP-~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~ 138 (220)
T 3l4c_A 83 IYYQVKQPRWFETVKVAIP-IEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLM 138 (220)
T ss_dssp CCTTCSSCCCCEEEEEEEC-TTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESB
T ss_pred EEEcCCCCCceEeEEEeeC-hhhcCCeEEEEEEEEecccccccccCCeeEEEEEEcc
Confidence 8889999999999987765 22233 33 34455432223346777777753
No 202
>2g9g_A Pngase, peptide N-glycanase; beta-sandwich, hydrolase; 2.00A {Mus musculus} SCOP: b.18.1.29
Probab=21.19 E-value=1.2e+02 Score=33.42 Aligned_cols=72 Identities=22% Similarity=0.336 Sum_probs=43.9
Q ss_pred ccceeccccCCCCC---eEEEEeecCCccCCccc-------ceEE-EEEeeEE-eeccccc--ceeecCC-C--------
Q 000133 2027 ESFAWSFEIPPKGQ---KLHISCKNKSKMGKSSF-------GKVT-IQIDRVV-MLGAVAG--EYTLLPE-S-------- 2083 (2100)
Q Consensus 2027 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~-~~~~~~~--~~~~~~~-~-------- 2083 (2100)
....|.||.++.|- ++.|.+. -.+|..++. ++|+ |+.+..+ .-...++ +|++... +
T Consensus 116 g~IsWkFdl~~~gl~V~ki~I~~~-sq~f~~G~v~~~i~~~~~c~~ip~~~~l~t~e~~~~~~~~~I~a~Lsgg~g~~aW 194 (221)
T 2g9g_A 116 AYISWKFECGSAGLKVDTVSIRTS-SQSFESGSVRWKLRSETAQVNLLGDKNLRSYNDFSGATEVTLEAELSRGDGDVAW 194 (221)
T ss_dssp EEEEEEEECTTTTEEEEEEEEEEE-EEECTTCEEEEEEECSSCEEEECCEEEEEEECTTTTCSEEEEEEEEECCCGGGGG
T ss_pred EEEEEEEecCCCCcEEEEEEEEEe-eEEecCCEEEEEEeCCCceEEecCCCceEeeccCCCCcEEEEEEEEeCCCCcccc
Confidence 45699999999884 8888888 466754433 2333 5555555 3333334 4544333 1
Q ss_pred ----------CCCCCcceEEEEEecC
Q 000133 2084 ----------KSGPSRNLEIEFLWSN 2099 (2100)
Q Consensus 2084 ----------~~~~~~~~~~~~~~~~ 2099 (2100)
+++..-+++|++.|.+
T Consensus 195 QhaQLFRqsL~~~~e~sf~V~v~~~~ 220 (221)
T 2g9g_A 195 QHTQLFRQSLNDSGENGLEIIITFND 220 (221)
T ss_dssp GSEEEEEEETTCCCCCSEEEEEEEEE
T ss_pred hhhHhhhhccccCCcCCEEEEEEEec
Confidence 1234457899999976
Done!