BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000134
(2096 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3L54|A Chain A, Structure Of Pi3k Gamma With Inhibitor
Length = 966
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 95/235 (40%), Gaps = 47/235 (20%)
Query: 1784 KPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGL 1843
K DDLR+D +++ I R++ E+ L + + I + GM+E V +
Sbjct: 691 KHGDDLRQDMLILQ----ILRIMESIWETESLDLCLLPYGCISTGDKIGMIEIVKDATTI 746
Query: 1844 RNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTF 1903
I Q + G F + N +K K P +E
Sbjct: 747 AKIQQSTVGNTGAFKDEVLNHWLKE-------KSPTEEK--------------------- 778
Query: 1904 SEPAAWFRARVA-YAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFD--K 1960
F+A V + ++ A + + ++G+GDRH +NI+ + TG+ H+DF + K
Sbjct: 779 ------FQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMI-TETGNLFHIDFGHILGNYK 831
Query: 1961 GLLLEKPELVPFRLTQNMIDGLGITGYEGT-----FLRVCEITLSVLRTHRETLM 2010
L E VPF LT + + +G +G + + F VC LR H L+
Sbjct: 832 SFLGINKERVPFVLTPDFLFVMGTSGKKTSPHFQKFQDVCVKAYLALRHHTNLLI 886
>pdb|4ANV|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors
Length = 980
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 100/250 (40%), Gaps = 47/250 (18%)
Query: 1784 KPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGL 1843
K DDLR+D +++ I R++ E+ L + + I + GM+E V +
Sbjct: 695 KHGDDLRQDMLILQ----ILRIMESIWETESLDLCLLPYGCISTGDKIGMIEIVKDATTI 750
Query: 1844 RNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTF 1903
I Q + G F + N +K K P +E
Sbjct: 751 AKIQQSTVGNTGAFKDEVLNHWLKE-------KSPTEEK--------------------- 782
Query: 1904 SEPAAWFRARVA-YAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFD--K 1960
F+A V + ++ A + + ++G+GDRH +NI+ + TG+ H+DF + K
Sbjct: 783 ------FQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMI-TETGNLFHIDFGHILGNYK 835
Query: 1961 GLLLEKPELVPFRLTQNMIDGLGITGYEGT-----FLRVCEITLSVLRTHRETLMSVLET 2015
L E VPF LT + + +G +G + + F +C LR H L+ +
Sbjct: 836 SFLGINKERVPFVLTPDFLFVMGTSGKKTSPHFQKFQDICVKAYLALRHHTNLLIILFSM 895
Query: 2016 FIHDPLVEWT 2025
+ + E T
Sbjct: 896 MLMTGMPELT 905
>pdb|4ANU|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors.
pdb|4ANW|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors
Length = 980
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 95/235 (40%), Gaps = 47/235 (20%)
Query: 1784 KPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGL 1843
K DDLR+D +++ I R++ E+ L + + I + GM+E V +
Sbjct: 695 KHGDDLRQDMLILQ----ILRIMESIWETESLDLCLLPYGCISTGDKIGMIEIVKDATTI 750
Query: 1844 RNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTF 1903
I Q + G F + N +K K P +E
Sbjct: 751 AKIQQSTVGNTGAFKDEVLNHWLKE-------KSPTEEK--------------------- 782
Query: 1904 SEPAAWFRARVA-YAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFD--K 1960
F+A V + ++ A + + ++G+GDRH +NI+ + TG+ H+DF + K
Sbjct: 783 ------FQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMI-TETGNLFHIDFGHILGNYK 835
Query: 1961 GLLLEKPELVPFRLTQNMIDGLGITGYEGT-----FLRVCEITLSVLRTHRETLM 2010
L E VPF LT + + +G +G + + F +C LR H L+
Sbjct: 836 SFLGINKERVPFVLTPDFLFVMGTSGKKTSPHFQKFQDICVKAYLALRHHTNLLI 890
>pdb|3APC|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With
Ch5132799
pdb|3APD|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With
Ch5108134
pdb|3APF|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With
Ch5039699
Length = 966
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 95/235 (40%), Gaps = 47/235 (20%)
Query: 1784 KPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGL 1843
K DDLR+D +++ I R++ E+ L + + I + GM+E V +
Sbjct: 697 KHGDDLRQDMLILQ----ILRIMESIWETESLDLCLLPYGCISTGDKIGMIEIVKDATTI 752
Query: 1844 RNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTF 1903
I Q + G F + N +K K P +E
Sbjct: 753 AKIQQSTVGNTGAFKDEVLNHWLKE-------KSPTEEK--------------------- 784
Query: 1904 SEPAAWFRARVA-YAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFD--K 1960
F+A V + ++ A + + ++G+GDRH +NI+ + TG+ H+DF + K
Sbjct: 785 ------FQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMI-TETGNLFHIDFGHILGNYK 837
Query: 1961 GLLLEKPELVPFRLTQNMIDGLGITGYEGT-----FLRVCEITLSVLRTHRETLM 2010
L E VPF LT + + +G +G + + F +C LR H L+
Sbjct: 838 SFLGINKERVPFVLTPDFLFVMGTSGKKTSPHFQKFQDICVKAYLALRHHTNLLI 892
>pdb|1HE8|A Chain A, Ras G12v-Pi 3-Kinase Gamma Complex
Length = 965
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 95/235 (40%), Gaps = 47/235 (20%)
Query: 1784 KPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGL 1843
K DDLR+D +++ I R++ E+ L + + I + GM+E V +
Sbjct: 690 KHGDDLRQDMLILQ----ILRIMESIWETESLDLCLLPYGCISTGDKIGMIEIVKDATTI 745
Query: 1844 RNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTF 1903
I Q + G F + N +K K P +E
Sbjct: 746 AKIQQSTVGNTGAFKDEVLNHWLKE-------KSPTEEK--------------------- 777
Query: 1904 SEPAAWFRARVA-YAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFD--K 1960
F+A V + ++ A + + ++G+GDRH +NI+ + TG+ H+DF + K
Sbjct: 778 ------FQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMI-TETGNLFHIDFGHILGNYK 830
Query: 1961 GLLLEKPELVPFRLTQNMIDGLGITGYEGT-----FLRVCEITLSVLRTHRETLM 2010
L E VPF LT + + +G +G + + F +C LR H L+
Sbjct: 831 SFLGINKERVPFVLTPDFLFVMGTSGKKTSPHFQKFQDICVKAYLALRHHTNLLI 885
>pdb|3DBS|A Chain A, Structure Of Pi3k Gamma In Complex With Gdc0941
pdb|3L13|A Chain A, Crystal Structures Of Pan-Pi3-Kinase And Dual
Pan-Pi3-KinaseMTOR Inhibitors
pdb|4AOF|A Chain A, Selective Small Molecule Inhibitor Discovered By
Chemoproteomic Assay Platform Reveals Regulation Of Th17
Cell Differentiation By Pi3kgamma
Length = 960
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 95/235 (40%), Gaps = 47/235 (20%)
Query: 1784 KPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGL 1843
K DDLR+D +++ I R++ E+ L + + I + GM+E V +
Sbjct: 691 KHGDDLRQDMLILQ----ILRIMESIWETESLDLCLLPYGCISTGDKIGMIEIVKDATTI 746
Query: 1844 RNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTF 1903
I Q + G F + N +K K P +E
Sbjct: 747 AKIQQSTVGNTGAFKDEVLNHWLKE-------KSPTEEK--------------------- 778
Query: 1904 SEPAAWFRARVA-YAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFD--K 1960
F+A V + ++ A + + ++G+GDRH +NI+ + TG+ H+DF + K
Sbjct: 779 ------FQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMI-TETGNLFHIDFGHILGNYK 831
Query: 1961 GLLLEKPELVPFRLTQNMIDGLGITGYEGT-----FLRVCEITLSVLRTHRETLM 2010
L E VPF LT + + +G +G + + F +C LR H L+
Sbjct: 832 SFLGINKERVPFVLTPDFLFVMGTSGKKTSPHFQKFQDICVKAYLALRHHTNLLI 886
>pdb|3CST|A Chain A, Crystal Structure Of Pi3k P110gamma Catalytical Domain In
Complex With Organoruthenium Inhibitor E5e2
pdb|3CSF|A Chain A, Crystal Structure Of Pi3k P110gamma Catalytical Domain In
Complex With Organoruthenium Inhibitor Dw2
pdb|3L16|A Chain A, Discovery Of (Thienopyrimidin-2-Yl)aminopyrimidines As
Potent, Selective, And Orally Available Pan-Pi3-Kinase
And Dual Pan-Pi3- KinaseMTOR INHIBITORS FOR THE TREATMENT
OF CANCER
pdb|3L17|A Chain A, Discovery Of (Thienopyrimidin-2-Yl)aminopyrimidines As
Potent, Selective, And Orally Available Pan-Pi3-Kinase
And Dual Pan-Pi3- KinaseMTOR INHIBITORS FOR THE TREATMENT
OF CANCER
pdb|3L08|A Chain A, Structure Of Pi3k Gamma With A Potent Inhibitor: Gsk2126458
pdb|3OAW|A Chain A, 4-Methylpteridineones As Orally Active And Selective
Pi3kMTOR DUAL Inhibitors
pdb|3PRE|A Chain A, Quinazolines With Intra-Molecular Hydrogen Bonding Scaffold
(Imhbs) As Pi3kMTOR DUAL INHIBITORS.
pdb|3PRZ|A Chain A, Quinazolines With Intra-Molecular Hydrogen Bonding Scaffold
(Imhbs) As Pi3kMTOR DUAL INHIBITORS.
pdb|3PS6|A Chain A, Quinazolines With Intra-Molecular Hydrogen Bonding Scaffold
(Imhbs) As Pi3kMTOR DUAL INHIBITORS.
pdb|3R7Q|A Chain A, Structure-Based Design Of Thienobenzoxepin Inhibitors Of
Pi3- Kinase
pdb|3R7R|A Chain A, Structure-Based Design Of Thienobenzoxepin Inhibitors Of
Pi3-Kinase
pdb|3ZVV|A Chain A, Fragment Bound To Pi3kinase Gamma
pdb|3ZW3|A Chain A, Fragment Based Discovery Of A Novel And Selective Pi3 Kinase
Inhibitor
pdb|3TL5|A Chain A, Discovery Of Gdc-0980: A Potent, Selective, And Orally
Available Class I Phosphatidylinositol 3-Kinase
(Pi3k)MAMMALIAN TARGET OF RAPAMYCIN (Mtor) Kinase
Inhibitor For The Treatment Of Cancer
pdb|3T8M|A Chain A, Rational Design Of Pi3k-Alpha Inhibitors That Exhibit
Selectivity Over The Pi3k-Beta Isoform
pdb|4GB9|A Chain A, Potent And Highly Selective Benzimidazole Inhibitors Of
Pi3k-Delta
pdb|4G11|A Chain A, X-Ray Structure Of Pi3k-Gamma Bound To A 4-(Morpholin-4-Yl)-
(6-Oxo-1, 6-Dihydropyrimidin-2-Yl)amide Inhibitor
pdb|4HLE|A Chain A, Compound 21 (1-alkyl-substituted 1,2,4-triazoles)
Length = 966
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 95/235 (40%), Gaps = 47/235 (20%)
Query: 1784 KPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGL 1843
K DDLR+D +++ I R++ E+ L + + I + GM+E V +
Sbjct: 691 KHGDDLRQDMLILQ----ILRIMESIWETESLDLCLLPYGCISTGDKIGMIEIVKDATTI 746
Query: 1844 RNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTF 1903
I Q + G F + N +K K P +E
Sbjct: 747 AKIQQSTVGNTGAFKDEVLNHWLKE-------KSPTEEK--------------------- 778
Query: 1904 SEPAAWFRARVA-YAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFD--K 1960
F+A V + ++ A + + ++G+GDRH +NI+ + TG+ H+DF + K
Sbjct: 779 ------FQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMI-TETGNLFHIDFGHILGNYK 831
Query: 1961 GLLLEKPELVPFRLTQNMIDGLGITGYEGT-----FLRVCEITLSVLRTHRETLM 2010
L E VPF LT + + +G +G + + F +C LR H L+
Sbjct: 832 SFLGINKERVPFVLTPDFLFVMGTSGKKTSPHFQKFQDICVKAYLALRHHTNLLI 886
>pdb|4DK5|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With A
Pyridyl- Triazine Inhibitor
Length = 959
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 95/235 (40%), Gaps = 47/235 (20%)
Query: 1784 KPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGL 1843
K DDLR+D +++ I R++ E+ L + + I + GM+E V +
Sbjct: 690 KHGDDLRQDMLILQ----ILRIMESIWETESLDLCLLPYGCISTGDKIGMIEIVKDATTI 745
Query: 1844 RNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTF 1903
I Q + G F + N +K K P +E
Sbjct: 746 AKIQQSTVGNTGAFKDEVLNHWLKE-------KSPTEEK--------------------- 777
Query: 1904 SEPAAWFRARVA-YAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFD--K 1960
F+A V + ++ A + + ++G+GDRH +NI+ + TG+ H+DF + K
Sbjct: 778 ------FQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMI-TETGNLFHIDFGHILGNYK 830
Query: 1961 GLLLEKPELVPFRLTQNMIDGLGITGYEGT-----FLRVCEITLSVLRTHRETLM 2010
L E VPF LT + + +G +G + + F +C LR H L+
Sbjct: 831 SFLGINKERVPFVLTPDFLFVMGTSGKKTSPHFQKFQDICVKAYLALRHHTNLLI 885
>pdb|1E8Y|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|1E8Z|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|2A4Z|A Chain A, Crystal Structure Of Human Pi3kgamma Complexed With As604850
pdb|2A5U|A Chain A, Crystal Structure Of Human Pi3kgamma Complexed With As605240
pdb|2CHW|A Chain A, A Pharmacological Map Of The Pi3-K Family Defines A Role For
P110 Alpha In Signaling: The Structure Of Complex Of
Phosphoinositide 3-Kinase Gamma With Inhibitor Pik-39
pdb|2CHX|A Chain A, A Pharmacological Map Of The Pi3-K Family Defines A Role For
P110alpha In Signaling: The Structure Of Complex Of
Phosphoinositide 3-Kinase Gamma With Inhibitor Pik-90
pdb|2CHZ|A Chain A, A Pharmacological Map Of The Pi3-K Family Defines A Role For
P110alpha In Signaling: The Structure Of Complex Of
Phosphoinositide 3-Kinase Gamma With Inhibitor Pik-93
pdb|3DPD|A Chain A, Achieving Multi-Isoform Pi3k Inhibition In A Series Of
Substituted 3,4-Dihydro-2h-Benzo[1,4]oxazines
pdb|2V4L|A Chain A, Complex Of Human Phosphoinositide 3-kinase Catalytic Subunit
Gamma (p110 Gamma) With Pik-284
pdb|3IBE|A Chain A, Crystal Structure Of A Pyrazolopyrimidine Inhibitor Bound To
Pi3 Kinase Gamma
pdb|3LJ3|A Chain A, Pi3-Kinase-Gamma With A Pyrrolopyridine-Benzofuran Inhibitor
pdb|3ML8|A Chain A, Discovery Of The Highly Potent Pi3kMTOR DUAL INHIBITOR PF-0
Through Structure Based Drug Design
pdb|3ML9|A Chain A, Discovery Of The Highly Potent Pi3kMTOR DUAL INHIBITOR PF-0
Through Structure Based Drug Design
pdb|3MJW|A Chain A, Pi3 Kinase Gamma With A Benzofuranone Inhibitor
pdb|3P2B|A Chain A, Crystal Structure Of Pi3k Gamma With
3-(2-Morpholino-6-(Pyridin-3-
Ylamino)pyrimidin-4-Yl)phenol
pdb|3SD5|A Chain A, Crystal Structure Of Pi3k Gamma With
5-(2,4-Dimorpholinopyrimidin-6-
Yl)-4-(Trifluoromethyl)pyridin-2-Amine
pdb|3TJP|A Chain A, Crystal Structure Of Pi3k Gamma With
N6-(3,4-Dimethoxyphenyl)-2-
Morpholino-[4,5'-Bipyrimidine]-2',6-Diamine
pdb|4FUL|A Chain A, Pi3 Kinase Gamma Bound To A Pyrmidine Inhibitor
Length = 966
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 95/235 (40%), Gaps = 47/235 (20%)
Query: 1784 KPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGL 1843
K DDLR+D +++ I R++ E+ L + + I + GM+E V +
Sbjct: 691 KHGDDLRQDMLILQ----ILRIMESIWETESLDLCLLPYGCISTGDKIGMIEIVKDATTI 746
Query: 1844 RNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTF 1903
I Q + G F + N +K K P +E
Sbjct: 747 AKIQQSTVGNTGAFKDEVLNHWLKE-------KSPTEEK--------------------- 778
Query: 1904 SEPAAWFRARVA-YAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFD--K 1960
F+A V + ++ A + + ++G+GDRH +NI+ + TG+ H+DF + K
Sbjct: 779 ------FQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMI-TETGNLFHIDFGHILGNYK 831
Query: 1961 GLLLEKPELVPFRLTQNMIDGLGITGYEGT-----FLRVCEITLSVLRTHRETLM 2010
L E VPF LT + + +G +G + + F +C LR H L+
Sbjct: 832 SFLGINKERVPFVLTPDFLFVMGTSGKKTSPHFQKFQDICVKAYLALRHHTNLLI 886
>pdb|3QAQ|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Triazine-Benzimidazole 1
pdb|3QAR|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Triazine-Benzimidazole 32
pdb|3QJZ|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Benzothiazole 1
pdb|3QK0|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Benzothiazole 82
pdb|3S2A|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With A Quinoline
Inhibitor
pdb|4FHJ|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Imidazopyridine 2
pdb|4F1S|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With A
Pyridyl- Triazine-Sulfonamide Inhibitor
pdb|4FLH|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With Amg511
pdb|4FJY|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Quinoline-Indoline Inhibitor 24f
pdb|4FJZ|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Pyrrolo-Pyridine Inhibitor 63
Length = 960
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 95/235 (40%), Gaps = 47/235 (20%)
Query: 1784 KPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGL 1843
K DDLR+D +++ I R++ E+ L + + I + GM+E V +
Sbjct: 691 KHGDDLRQDMLILQ----ILRIMESIWETESLDLCLLPYGCISTGDKIGMIEIVKDATTI 746
Query: 1844 RNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTF 1903
I Q + G F + N +K K P +E
Sbjct: 747 AKIQQSTVGNTGAFKDEVLNHWLKE-------KSPTEEK--------------------- 778
Query: 1904 SEPAAWFRARVA-YAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFD--K 1960
F+A V + ++ A + + ++G+GDRH +NI+ + TG+ H+DF + K
Sbjct: 779 ------FQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMI-TETGNLFHIDFGHILGNYK 831
Query: 1961 GLLLEKPELVPFRLTQNMIDGLGITGYEGT-----FLRVCEITLSVLRTHRETLM 2010
L E VPF LT + + +G +G + + F +C LR H L+
Sbjct: 832 SFLGINKERVPFVLTPDFLFVMGTSGKKTSPHFQKFQDICVKAYLALRHHTNLLI 886
>pdb|3NZS|A Chain A, Structure-Based Optimization Of Pyrazolo -Pyrimidine And
-Pyridine Inhibitors Of Pi3-Kinase
pdb|3NZU|A Chain A, Structure-Based Optimization Of Pyrazolo -Pyrimidine And
-Pyridine Inhibitors Of Pi3-Kinase
Length = 954
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 95/235 (40%), Gaps = 47/235 (20%)
Query: 1784 KPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGL 1843
K DDLR+D +++ I R++ E+ L + + I + GM+E V +
Sbjct: 687 KHGDDLRQDMLILQ----ILRIMESIWETESLDLCLLPYGCISTGDKIGMIEIVKDATTI 742
Query: 1844 RNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTF 1903
I Q + G F + N +K K P +E
Sbjct: 743 AKIQQSTVGNTGAFKDEVLNHWLKE-------KSPTEEK--------------------- 774
Query: 1904 SEPAAWFRARVA-YAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFD--K 1960
F+A V + ++ A + + ++G+GDRH +NI+ + TG+ H+DF + K
Sbjct: 775 ------FQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMI-TETGNLFHIDFGHILGNYK 827
Query: 1961 GLLLEKPELVPFRLTQNMIDGLGITGYEGT-----FLRVCEITLSVLRTHRETLM 2010
L E VPF LT + + +G +G + + F +C LR H L+
Sbjct: 828 SFLGINKERVPFVLTPDFLFVMGTSGKKTSPHFQKFQDICVKAYLALRHHTNLLI 882
>pdb|3ENE|A Chain A, Complex Of Pi3k Gamma With An Inhibitor
Length = 959
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 95/235 (40%), Gaps = 47/235 (20%)
Query: 1784 KPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGL 1843
K DDLR+D +++ I R++ E+ L + + I + GM+E V +
Sbjct: 690 KHGDDLRQDMLILQ----ILRIMESIWETESLDLCLLPYGCISTGDKIGMIEIVKDATTI 745
Query: 1844 RNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTF 1903
I Q + G F + N +K K P +E
Sbjct: 746 AKIQQSTVGNTGAFKDEVLNHWLKE-------KSPTEEK--------------------- 777
Query: 1904 SEPAAWFRARVA-YAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFD--K 1960
F+A V + ++ A + + ++G+GDRH +NI+ + TG+ H+DF + K
Sbjct: 778 ------FQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMI-TETGNLFHIDFGHILGNYK 830
Query: 1961 GLLLEKPELVPFRLTQNMIDGLGITGYEGT-----FLRVCEITLSVLRTHRETLM 2010
L E VPF LT + + +G +G + + F +C LR H L+
Sbjct: 831 SFLGINKERVPFVLTPDFLFVMGTSGKKTSPHFQKFQDICVKAYLALRHHTNLLI 885
>pdb|1E8X|A Chain A, Structural Insights Into Phoshoinositide 3-Kinase Enzymatic
Mechanism And Signalling
pdb|1E90|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|1E7V|A Chain A, Structure Determinants Of Phosphoinositide 3-kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|1E8W|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
Length = 961
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 95/235 (40%), Gaps = 47/235 (20%)
Query: 1784 KPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGL 1843
K DDLR+D +++ I R++ E+ L + + I + GM+E V +
Sbjct: 692 KHGDDLRQDMLILQ----ILRIMESIWETESLDLCLLPYGCISTGDKIGMIEIVKDATTI 747
Query: 1844 RNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTF 1903
I Q + G F + + +K K P +E
Sbjct: 748 AKIQQSTVGNTGAFKDEVLSHWLKE-------KCPIEEK--------------------- 779
Query: 1904 SEPAAWFRARVA-YAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFD--K 1960
F+A V + ++ A + + ++G+GDRH +NI+ S TG+ H+DF + K
Sbjct: 780 ------FQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMI-SETGNLFHIDFGHILGNYK 832
Query: 1961 GLLLEKPELVPFRLTQNMIDGLGITGYEGT-----FLRVCEITLSVLRTHRETLM 2010
L E VPF LT + + +G +G + + F VC LR H L+
Sbjct: 833 SFLGINKERVPFVLTPDFLFVMGTSGKKTSLHFQKFQDVCVKAYLALRHHTNLLI 887
>pdb|1E7U|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
Length = 961
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 95/235 (40%), Gaps = 47/235 (20%)
Query: 1784 KPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGL 1843
K DDLR+D +++ I R++ E+ L + + I + GM+E V +
Sbjct: 692 KHGDDLRQDMLILQ----ILRIMESIWETESLDLCLLPYGCISTGDKIGMIEIVKDATTI 747
Query: 1844 RNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTF 1903
I Q + G F + + +K K P +E
Sbjct: 748 AKIQQSTVGNTGAFKDEVLSHWLKE-------KCPIEEK--------------------- 779
Query: 1904 SEPAAWFRARVA-YAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFD--K 1960
F+A V + ++ A + + ++G+GDRH +NI+ S TG+ H+DF + K
Sbjct: 780 ------FQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMI-SETGNLFHIDFGHILGNYK 832
Query: 1961 GLLLEKPELVPFRLTQNMIDGLGITGYEGT-----FLRVCEITLSVLRTHRETLM 2010
L E VPF LT + + +G +G + + F VC LR H L+
Sbjct: 833 SFLGINKERVPFVLTPDFLFVMGTSGKKTSLHFQKFQDVCVKAYLALRHHTNLLI 887
>pdb|4ANX|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors
Length = 980
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 95/235 (40%), Gaps = 47/235 (20%)
Query: 1784 KPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGL 1843
K DDLR+D +++ I R++ E+ L + + I + GM+E V +
Sbjct: 695 KHGDDLRQDMLILQ----ILRIMESIWETESLDLCLLPYGCISTGDKIGMIEIVKDATTI 750
Query: 1844 RNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTF 1903
I Q + G F + N +K K P +E
Sbjct: 751 AKIQQSTVGNTGAFKDEVLNHWLKE-------KSPTEEK--------------------- 782
Query: 1904 SEPAAWFRARVA-YAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFD--K 1960
F+A V + ++ A + + ++G+GDRH +NI+ + TG+ H+DF + K
Sbjct: 783 ------FQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMI-TETGNLFHIDFGHINGNYK 835
Query: 1961 GLLLEKPELVPFRLTQNMIDGLGITGYEGT-----FLRVCEITLSVLRTHRETLM 2010
L E VPF LT + + +G +G + + F +C LR H L+
Sbjct: 836 SFLGINKERVPFVLTPDFLFVMGTSGKKTSPHFQKFQDICVKAYLALRHHTNLLI 890
>pdb|3IHY|A Chain A, Human Pik3c3 Crystal Structure
pdb|3IHY|B Chain B, Human Pik3c3 Crystal Structure
pdb|3IHY|C Chain C, Human Pik3c3 Crystal Structure
pdb|3IHY|D Chain D, Human Pik3c3 Crystal Structure
pdb|3IHY|E Chain E, Human Pik3c3 Crystal Structure
Length = 600
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/271 (21%), Positives = 105/271 (38%), Gaps = 50/271 (18%)
Query: 1750 ISGIADE-AEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSK 1808
I GI E A + S P ++ DG K P + K DDLR+D +++ +++++LL K
Sbjct: 322 IRGIIPETATLFKSALMPAQLFFKTEDGGKYPVIFKHGDDLRQDQLILQIISLMDKLLRK 381
Query: 1809 YPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKR 1868
L + + V+ + G +
Sbjct: 382 ----ENLDLKLTPYKVLATSTKHGFM---------------------------------- 403
Query: 1869 IYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGH 1928
QF +P E+L T+ F K+ + Y + A + ++ +
Sbjct: 404 ---QFIQSVPVAEVLDTE--GSIQNFFRKYAPSENGPNGISAEVMDTYVKSCAGYCVITY 458
Query: 1929 IVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMIDGLGITGYE 1988
I+G+GDRH +N+L + TG H+DF + + P + L + M++G+G T E
Sbjct: 459 ILGVGDRHLDNLLL-TKTGKLFHIDFGYILGRDPKPLPPPMK---LNKEMVEGMGGTQSE 514
Query: 1989 --GTFLRVCEITLSVLRTHRETLMSVLETFI 2017
F + C LR + ++++ +
Sbjct: 515 QYQEFRKQCYTAFLHLRRYSNLILNLFSLMV 545
>pdb|3LS8|A Chain A, Crystal Structure Of Human Pik3c3 In Complex With 3-[4-(4-
Morpholinyl)thieno[3,2-D]pyrimidin-2-Yl]-Phenol
pdb|3LS8|B Chain B, Crystal Structure Of Human Pik3c3 In Complex With 3-[4-(4-
Morpholinyl)thieno[3,2-D]pyrimidin-2-Yl]-Phenol
Length = 614
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 57/271 (21%), Positives = 105/271 (38%), Gaps = 50/271 (18%)
Query: 1750 ISGIADE-AEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSK 1808
I GI E A + S P ++ DG K P + K DDLR+D +++ +++++LL K
Sbjct: 336 IRGIIPETATLFKSALMPAQLFFKTEDGGKYPVIFKHGDDLRQDQLILQIISLMDKLLRK 395
Query: 1809 YPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKR 1868
L + + V+ + G +
Sbjct: 396 ----ENLDLKLTPYKVLATSTKHGFM---------------------------------- 417
Query: 1869 IYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGH 1928
QF +P E+L T+ F K+ + Y + A + ++ +
Sbjct: 418 ---QFIQSVPVAEVLDTE--GSIQNFFRKYAPSENGPNGISAEVMDTYVKSCAGYCVITY 472
Query: 1929 IVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMIDGLGITGYE 1988
I+G+GDRH +N+L + TG H+DF + + P + L + M++G+G T E
Sbjct: 473 ILGVGDRHLDNLLL-TKTGKLFHIDFGYILGRDPKPLPPPMK---LNKEMVEGMGGTQSE 528
Query: 1989 --GTFLRVCEITLSVLRTHRETLMSVLETFI 2017
F + C LR + ++++ +
Sbjct: 529 QYQEFRKQCYTAFLHLRRYSNLILNLFSLMV 559
>pdb|2Y3A|A Chain A, Crystal Structure Of P110beta In Complex With Icsh2 Of
P85beta And The Drug Gdc-0941
Length = 1092
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 8/122 (6%)
Query: 1911 RARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFD--KGLLLEKPE 1968
RA + + A + + +++G+GDRH +NI+ TG H+DF + K K E
Sbjct: 918 RAIEEFTLSCAGYCVASYVLGIGDRHSDNIMV-KKTGQLFHIDFGHILGNFKSKFGIKRE 976
Query: 1969 LVPFRLTQNMIDGL--GITGYE---GTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVE 2023
VPF LT + I + G TG G F + CE +LR H +++ + L E
Sbjct: 977 RVPFILTYDFIHVIQQGKTGNTEKFGRFRQCCEDAYLILRRHGNLFITLFALMLTAGLPE 1036
Query: 2024 WT 2025
T
Sbjct: 1037 LT 1038
>pdb|2WXF|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With Pik-39.
pdb|2WXG|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With Sw13.
pdb|2WXH|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With Sw14.
pdb|2WXI|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-kinase
P110delta In Complex With Sw30.
pdb|2WXJ|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With Ink654.
pdb|2WXK|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With Ink666.
pdb|2WXL|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With Zstk474.
pdb|2WXM|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With Dl06.
pdb|2WXN|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-kinase
P110delta In Complex With Dl07.
pdb|2WXO|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With As5.
pdb|2WXP|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With Gdc-0941.
pdb|2WXQ|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With As15.
pdb|2WXR|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta.
pdb|2X38|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With Ic87114
Length = 940
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 93/230 (40%), Gaps = 46/230 (20%)
Query: 1784 KPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGL 1843
K DDLR+D ++ +++ L + L + + +P + G++E V H+ +
Sbjct: 675 KNGDDLRQDMLTLQMIQLMDVLWKQ----EGLDLRMTPYGCLPTGDRTGLIEVVLHSDTI 730
Query: 1844 RNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTF 1903
NI K+N +++ D +L +L +
Sbjct: 731 ANI-----------QLNKSNMAATAAFNK-------DALLN--------------WLKSK 758
Query: 1904 SEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCL---FDK 1960
+ A RA + + A + + +++G+GDRH +NI+ +G H+DF F
Sbjct: 759 NPGEALDRAIEEFTLSCAGYCVATYVLGIGDRHSDNIMI-RESGQLFHIDFGHFLGNFKT 817
Query: 1961 GLLLEKPELVPFRLTQNMIDGL--GITGYEGTFLRV---CEITLSVLRTH 2005
+ + E VPF LT + + + G T F R CE ++LR H
Sbjct: 818 KFGINR-ERVPFILTYDFVHVIQQGKTNNSEKFERFRGYCERAYTILRRH 866
>pdb|4AJW|A Chain A, Discovery And Optimization Of New Benzimidazole- And
Benzoxazole- Pyrimidone Selective Pi3kbeta Inhibitors For
The Treatment Of Phosphatase And Tensin Homologue
(Pten)-Deficient Cancers
pdb|4AJW|B Chain B, Discovery And Optimization Of New Benzimidazole- And
Benzoxazole- Pyrimidone Selective Pi3kbeta Inhibitors For
The Treatment Of Phosphatase And Tensin Homologue
(Pten)-Deficient Cancers
Length = 934
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 93/230 (40%), Gaps = 46/230 (20%)
Query: 1784 KPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGL 1843
K DDLR+D ++ +++ L + L + + +P + G++E V H+ +
Sbjct: 669 KNGDDLRQDMLTLQMIQLMDVLWKQ----EGLDLRMTPYGCLPTGDRTGLIEVVLHSDTI 724
Query: 1844 RNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTF 1903
NI K+N +++ D +L +L +
Sbjct: 725 ANI-----------QLNKSNMAATAAFNK-------DALLN--------------WLKSK 752
Query: 1904 SEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCL---FDK 1960
+ A RA + + A + + +++G+GDRH +NI+ +G H+DF F
Sbjct: 753 NPGEALDRAIEEFTLSCAGYCVATYVLGIGDRHSDNIMI-RESGQLFHIDFGHFLGNFKT 811
Query: 1961 GLLLEKPELVPFRLTQNMIDGL--GITGYEGTFLRV---CEITLSVLRTH 2005
+ + E VPF LT + + + G T F R CE ++LR H
Sbjct: 812 KFGINR-ERVPFILTYDFVHVIQQGKTNNSEKFERFRGYCERAYTILRRH 860
>pdb|3ZIM|A Chain A, Discovery Of A Potent And Isoform-selective Targeted
Covalent Inhibitor Of The Lipid Kinase Pi3kalpha
Length = 940
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 10/117 (8%)
Query: 1916 YAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFD--KGLLLEKPELVPFR 1973
+ + A + + I+G+GDRH NI+ G H+DF D K K E VPF
Sbjct: 791 FTRSCAGYCVATFILGIGDRHNSNIMV-KDDGQLFHIDFGHFLDHKKKKFGYKRERVPFV 849
Query: 1974 LTQNMIDGLGITGYEGT-------FLRVCEITLSVLRTHRETLMSVLETFIHDPLVE 2023
LTQ+ + + E T F +C +R H +++ + + E
Sbjct: 850 LTQDFLIVISKGAQECTKTREFERFQEMCYKAYLAIRQHANLFINLFSMMLGSGMPE 906
>pdb|2RD0|A Chain A, Structure Of A Human P110alpha/p85alpha Complex
Length = 1096
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 10/117 (8%)
Query: 1916 YAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFD--KGLLLEKPELVPFR 1973
+ + A + + I+G+GDRH NI+ G H+DF D K K E VPF
Sbjct: 925 FTRSCAGYCVATFILGIGDRHNSNIMVKD-DGQLFHIDFGHFLDHKKKKFGYKRERVPFV 983
Query: 1974 LTQNMIDGLGITGYEGT-------FLRVCEITLSVLRTHRETLMSVLETFIHDPLVE 2023
LTQ+ + + E T F +C +R H +++ + + E
Sbjct: 984 LTQDFLIVISKGAQECTKTREFERFQEMCYKAYLAIRQHANLFINLFSMMLGSGMPE 1040
>pdb|3HIZ|A Chain A, Crystal Structure Of P110alpha H1047r Mutant In Complex With
Nish2 Of P85alpha
Length = 1096
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 10/117 (8%)
Query: 1916 YAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFD--KGLLLEKPELVPFR 1973
+ + A + + I+G+GDRH NI+ G H+DF D K K E VPF
Sbjct: 925 FTRSCAGYCVATFILGIGDRHNSNIMVKD-DGQLFHIDFGHFLDHKKKKFGYKRERVPFV 983
Query: 1974 LTQNMIDGLGITGYEGT-------FLRVCEITLSVLRTHRETLMSVLETFIHDPLVE 2023
LTQ+ + + E T F +C +R H +++ + + E
Sbjct: 984 LTQDFLIVISKGAQECTKTREFERFQEMCYKAYLAIRQHANLFINLFSMMLGSGMPE 1040
>pdb|3HHM|A Chain A, Crystal Structure Of P110alpha H1047r Mutant In Complex With
Nish2 Of P85alpha And The Drug Wortmannin
Length = 1091
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 10/117 (8%)
Query: 1916 YAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFD--KGLLLEKPELVPFR 1973
+ + A + + I+G+GDRH NI+ G H+DF D K K E VPF
Sbjct: 920 FTRSCAGYCVATFILGIGDRHNSNIMV-KDDGQLFHIDFGHFLDHKKKKFGYKRERVPFV 978
Query: 1974 LTQNMIDGLGITGYEGT-------FLRVCEITLSVLRTHRETLMSVLETFIHDPLVE 2023
LTQ+ + + E T F +C +R H +++ + + E
Sbjct: 979 LTQDFLIVISKGAQECTKTREFERFQEMCYKAYLAIRQHANLFINLFSMMLGSGMPE 1035
>pdb|4A55|A Chain A, Crystal Structure Of P110alpha In Complex With Ish2 Of
P85alpha And The Inhibitor Pik-108
Length = 1096
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 10/111 (9%)
Query: 1916 YAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFD--KGLLLEKPELVPFR 1973
+ + A + + I+G+GDRH NI+ G H+DF D K K E VPF
Sbjct: 925 FTRSCAGYCVATFILGIGDRHNSNIMVKD-DGQLFHIDFGHFLDHKKKKFGYKRERVPFV 983
Query: 1974 LTQN--MIDGLGITGYEGT-----FLRVCEITLSVLRTHRETLMSVLETFI 2017
LTQ+ ++ G Y T F +C +R H +++ +
Sbjct: 984 LTQDFLIVISKGAQEYTKTREFERFQEMCYKAYLAIRQHANLFINLFSMML 1034
>pdb|2X6F|A Chain A, The Crystal Structure Of The Drosophila Class Iii Pi3-Kinase
Vps34 In Complex With 3-Methyladenine
pdb|2X6F|B Chain B, The Crystal Structure Of The Drosophila Class Iii Pi3-Kinase
Vps34 In Complex With 3-Methyladenine
pdb|2X6H|A Chain A, The Crystal Structure Of The Drosophila Class Iii Pi3-Kinase
Vps34
pdb|2X6H|B Chain B, The Crystal Structure Of The Drosophila Class Iii Pi3-Kinase
Vps34
pdb|2X6I|A Chain A, The Crystal Structure Of The Drosophila Class Iii Pi3-kinase
Vps34 In Complex With Pik-90
pdb|2X6I|B Chain B, The Crystal Structure Of The Drosophila Class Iii Pi3-kinase
Vps34 In Complex With Pik-90
pdb|2X6J|A Chain A, The Crystal Structure Of The Drosophila Class Iii Pi3-Kinase
Vps34 In Complex With Pik-93
pdb|2X6J|B Chain B, The Crystal Structure Of The Drosophila Class Iii Pi3-Kinase
Vps34 In Complex With Pik-93
pdb|2X6K|A Chain A, The Crystal Structure Of The Drosophila Class Iii Pi3-Kinase
Vps34 In Complex With Pi-103
pdb|2X6K|B Chain B, The Crystal Structure Of The Drosophila Class Iii Pi3-Kinase
Vps34 In Complex With Pi-103
Length = 696
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 1916 YAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLT 1975
Y + A + ++ +++G+GDRH +N+L +T G H+DF + + P + L+
Sbjct: 534 YIKSCAGYCVITYLLGVGDRHLDNLLL-TTNGKLFHIDFGYILGRDPKPMPPPMK---LS 589
Query: 1976 QNMIDGLG--ITGYEGTFLRVCEITLSVLRTHRETLMSVLETFI 2017
+ M++ +G + + F + C LR H ++++ +
Sbjct: 590 KEMVEAMGGISSEHHHEFRKQCYTAYLHLRRHANVMLNLFSLMV 633
>pdb|2E0A|A Chain A, Crystal Structure Of Human Pyruvate Dehydrogenase Kinase 4
In Complex With Amppnp
pdb|2E0A|B Chain B, Crystal Structure Of Human Pyruvate Dehydrogenase Kinase 4
In Complex With Amppnp
pdb|2ZDX|A Chain A, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
pdb|2ZDX|B Chain B, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
pdb|2ZDY|A Chain A, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
pdb|2ZDY|B Chain B, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
Length = 394
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 10/66 (15%)
Query: 79 IVDWDKNACKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHNQEL----SSKIVNPSDV 134
I+++ K+AC + D + +Q + Y L+ F+ ++ T ++ NQ + S+ NPS +
Sbjct: 121 IIEY-KDACTV-----DPVTNQNLQYFLDRFYMNRISTRMLMNQHILIFSDSQTGNPSHI 174
Query: 135 QSKDLN 140
S D N
Sbjct: 175 GSIDPN 180
>pdb|2ZKJ|A Chain A, Crystal Structure Of Human Pdk4-Adp Complex
pdb|2ZKJ|B Chain B, Crystal Structure Of Human Pdk4-Adp Complex
pdb|3D2R|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Kinase Isoform
4 In Complex With Adp
pdb|3D2R|B Chain B, Crystal Structure Of Pyruvate Dehydrogenase Kinase Isoform
4 In Complex With Adp
Length = 394
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 10/66 (15%)
Query: 79 IVDWDKNACKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHNQEL----SSKIVNPSDV 134
I+++ K+AC + D + +Q + Y L+ F+ ++ T ++ NQ + S+ NPS +
Sbjct: 121 IIEY-KDACTV-----DPVTNQNLQYFLDRFYMNRISTRMLMNQHILIFSDSQTGNPSHI 174
Query: 135 QSKDLN 140
S D N
Sbjct: 175 GSIDPN 180
>pdb|3TFH|A Chain A, Dmsp-Dependent Demethylase From P. Ubique - Apo
pdb|3TFH|B Chain B, Dmsp-Dependent Demethylase From P. Ubique - Apo
pdb|3TFI|A Chain A, Dmsp-Dependent Demethylase From P. Ubique - With Substrate
Dmsp
pdb|3TFI|B Chain B, Dmsp-Dependent Demethylase From P. Ubique - With Substrate
Dmsp
pdb|3TFJ|A Chain A, Dmsp-Dependent Demethylase From P. Ubique - With Cofactor
Thf
pdb|3TFJ|B Chain B, Dmsp-Dependent Demethylase From P. Ubique - With Cofactor
Thf
Length = 369
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 1518 EKRWWFYVPDV-LLFYAKGLHRGHK 1541
E +WW + D ++F+AKGL GHK
Sbjct: 116 ENKWWISIADSDVIFFAKGLASGHK 140
>pdb|2I7T|A Chain A, Structure Of Human Cpsf-73
pdb|2I7V|A Chain A, Structure Of Human Cpsf-73
Length = 459
Score = 30.8 bits (68), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 211 CTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMM 270
C + +FLQ T +A+ L D +K++ +ADD L ET LE + + +
Sbjct: 77 CGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIE 136
Query: 271 AVDVH 275
++ H
Sbjct: 137 TINFH 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,743,528
Number of Sequences: 62578
Number of extensions: 2260625
Number of successful extensions: 5640
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 5612
Number of HSP's gapped (non-prelim): 66
length of query: 2096
length of database: 14,973,337
effective HSP length: 114
effective length of query: 1982
effective length of database: 7,839,445
effective search space: 15537779990
effective search space used: 15537779990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)