Query 000134
Match_columns 2096
No_of_seqs 393 out of 1582
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 20:00:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000134.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000134hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0890 Protein kinase of the 100.0 2E-278 4E-283 2718.2 139.2 1908 20-2096 444-2382(2382)
2 KOG0892 Protein kinase ATM/Tel 100.0 9E-111 2E-115 1119.4 98.4 1332 605-2096 1295-2806(2806)
3 KOG0891 DNA-dependent protein 100.0 8E-86 1.7E-90 908.8 50.6 975 1038-2096 1220-2341(2341)
4 KOG0889 Histone acetyltransfer 100.0 1.1E-77 2.3E-82 816.8 69.5 1034 911-2096 2339-3550(3550)
5 COG5032 TEL1 Phosphatidylinosi 100.0 2.5E-71 5.4E-76 789.3 90.7 466 1590-2096 1634-2105(2105)
6 cd05171 PIKKc_ATM Ataxia telan 100.0 5.7E-65 1.2E-69 605.1 27.1 273 1750-2025 1-278 (279)
7 cd05170 PIKKc_SMG1 Suppressor 100.0 2.3E-64 5E-69 606.2 28.3 277 1750-2026 1-307 (307)
8 cd05169 PIKKc_TOR TOR (Target 100.0 4.1E-64 8.9E-69 600.6 25.1 271 1750-2025 1-279 (280)
9 cd05163 TRRAP TRansformation/t 100.0 9.2E-64 2E-68 585.0 25.0 247 1750-2026 1-253 (253)
10 cd05172 PIKKc_DNA-PK DNA-depen 100.0 4.6E-63 9.9E-68 573.2 25.0 234 1750-2026 1-235 (235)
11 cd00892 PIKKc_ATR ATR (Ataxia 100.0 1E-61 2.2E-66 563.3 25.3 237 1750-2026 1-237 (237)
12 cd05164 PIKKc Phosphoinositide 100.0 4.4E-58 9.6E-63 528.4 24.4 222 1750-2019 1-222 (222)
13 cd00142 PI3Kc_like Phosphoinos 100.0 2.5E-53 5.3E-58 490.1 24.2 219 1750-2019 1-219 (219)
14 cd00891 PI3Kc Phosphoinositide 100.0 7E-52 1.5E-56 502.4 31.0 279 1745-2083 54-339 (352)
15 cd00896 PI3Kc_III Phosphoinosi 100.0 7.9E-52 1.7E-56 500.8 27.5 284 1742-2096 55-350 (350)
16 cd05166 PI3Kc_II Phosphoinosit 100.0 6.7E-51 1.5E-55 492.5 28.7 277 1745-2082 54-339 (353)
17 cd05168 PI4Kc_III_beta Phospho 100.0 9.2E-51 2E-55 480.0 21.7 266 1763-2093 15-286 (293)
18 cd05165 PI3Kc_I Phosphoinositi 100.0 8.2E-50 1.8E-54 481.9 28.4 280 1743-2081 57-350 (366)
19 smart00146 PI3Kc Phosphoinosit 100.0 4.8E-50 1E-54 457.6 21.8 199 1780-2027 1-200 (202)
20 cd05177 PI3Kc_C2_gamma Phospho 100.0 7.5E-49 1.6E-53 471.7 28.4 278 1743-2081 53-339 (354)
21 cd00894 PI3Kc_IB_gamma Phospho 100.0 1.5E-47 3.3E-52 460.4 28.5 280 1743-2082 58-350 (365)
22 cd05173 PI3Kc_IA_beta Phosphoi 100.0 2.8E-47 6.1E-52 459.3 29.3 277 1743-2081 56-345 (362)
23 cd05174 PI3Kc_IA_delta Phospho 100.0 5.4E-47 1.2E-51 455.0 29.1 277 1743-2081 56-345 (361)
24 cd00893 PI4Kc_III Phosphoinosi 100.0 2.2E-47 4.7E-52 450.6 23.1 257 1757-2082 8-272 (289)
25 PF00454 PI3_PI4_kinase: Phosp 100.0 2.3E-47 5E-52 447.3 17.1 231 1778-2026 1-235 (235)
26 cd05176 PI3Kc_C2_alpha Phospho 100.0 4.5E-46 9.7E-51 445.1 28.4 278 1744-2082 53-339 (353)
27 cd05167 PI4Kc_III_alpha Phosph 100.0 3.9E-46 8.4E-51 442.7 26.5 279 1745-2093 5-304 (311)
28 cd00895 PI3Kc_C2_beta Phosphoi 100.0 3.5E-43 7.6E-48 420.5 29.3 279 1743-2082 53-340 (354)
29 cd05175 PI3Kc_IA_alpha Phospho 100.0 2.1E-42 4.6E-47 413.8 27.4 277 1743-2082 56-351 (366)
30 PF02259 FAT: FAT domain; Int 100.0 2.2E-41 4.7E-46 418.8 32.1 341 1186-1552 1-352 (352)
31 KOG0906 Phosphatidylinositol 3 100.0 2.1E-33 4.5E-38 338.7 30.3 461 1527-2082 309-826 (843)
32 KOG0905 Phosphoinositide 3-kin 100.0 1.4E-33 3E-38 354.6 29.1 380 1578-2025 905-1298(1639)
33 KOG0904 Phosphatidylinositol 3 100.0 2E-31 4.3E-36 330.4 23.1 387 1579-2026 627-1028(1076)
34 KOG0902 Phosphatidylinositol 4 100.0 3E-28 6.5E-33 313.0 30.0 377 1579-2025 1352-1751(1803)
35 KOG0903 Phosphatidylinositol 4 99.9 8.6E-25 1.9E-29 270.3 22.5 249 1767-2082 574-830 (847)
36 smart00802 UME Domain in UVSB 99.9 1.8E-24 4E-29 219.5 9.3 103 488-593 1-106 (107)
37 PTZ00303 phosphatidylinositol 99.9 6.3E-23 1.4E-27 249.2 17.6 163 1765-1984 1027-1200(1374)
38 PF08064 UME: UME (NUC010) dom 99.9 5.6E-23 1.2E-27 210.8 9.4 103 488-593 1-106 (107)
39 PF02260 FATC: FATC domain; I 99.3 1.1E-12 2.3E-17 104.8 1.0 32 2065-2096 2-33 (33)
40 COG5032 TEL1 Phosphatidylinosi 98.7 4.6E-06 1E-10 123.0 30.6 563 1041-1663 1019-1614(2105)
41 KOG2171 Karyopherin (importin) 98.3 0.0011 2.3E-08 89.5 37.5 474 148-740 37-548 (1075)
42 TIGR02917 PEP_TPR_lipo putativ 98.3 0.021 4.6E-07 79.4 50.1 152 1044-1208 129-286 (899)
43 TIGR02917 PEP_TPR_lipo putativ 98.2 0.0073 1.6E-07 83.9 42.6 409 1044-1558 469-885 (899)
44 PRK11447 cellulose synthase su 97.9 0.02 4.3E-07 83.0 38.3 345 1121-1498 276-648 (1157)
45 PRK10049 pgaA outer membrane p 97.9 0.042 9.1E-07 76.3 39.9 384 1086-1542 15-426 (765)
46 PRK11447 cellulose synthase su 97.8 0.031 6.7E-07 81.1 38.7 124 1045-1180 274-417 (1157)
47 TIGR00990 3a0801s09 mitochondr 97.7 0.018 3.9E-07 77.9 32.5 86 1117-1204 130-215 (615)
48 PRK15174 Vi polysaccharide exp 97.6 0.059 1.3E-06 73.5 34.7 332 1045-1487 47-386 (656)
49 KOG2076 RNA polymerase III tra 97.6 0.015 3.3E-07 77.0 27.1 325 1047-1408 146-510 (895)
50 KOG1824 TATA-binding protein-i 97.6 0.25 5.4E-06 65.9 36.9 447 200-739 95-597 (1233)
51 TIGR00990 3a0801s09 mitochondr 97.4 0.18 4E-06 68.3 36.3 50 1122-1171 168-217 (615)
52 PRK15174 Vi polysaccharide exp 97.3 0.094 2E-06 71.6 31.1 309 1120-1497 48-362 (656)
53 PRK11788 tetratricopeptide rep 97.3 0.095 2.1E-06 66.4 29.4 275 1121-1493 42-322 (389)
54 PRK11788 tetratricopeptide rep 97.3 0.19 4.2E-06 63.6 31.3 118 1045-1174 40-167 (389)
55 KOG2023 Nuclear transport rece 97.1 2 4.2E-05 56.1 39.6 102 193-308 94-201 (885)
56 PRK10747 putative protoheme IX 97.0 0.24 5.3E-06 63.5 28.8 63 1347-1409 326-389 (398)
57 PF10508 Proteasom_PSMB: Prote 97.0 0.2 4.2E-06 66.3 28.3 170 152-341 43-213 (503)
58 PRK09782 bacteriophage N4 rece 96.9 1.4 3E-05 62.6 36.7 355 1045-1541 381-743 (987)
59 KOG4626 O-linked N-acetylgluco 96.9 0.69 1.5E-05 59.4 29.5 410 1039-1558 47-510 (966)
60 PRK10049 pgaA outer membrane p 96.7 3.5 7.6E-05 57.6 38.6 380 1047-1497 22-437 (765)
61 TIGR00540 hemY_coli hemY prote 96.6 2.8 6E-05 54.1 34.0 60 1350-1409 336-398 (409)
62 PF11865 DUF3385: Domain of un 96.3 0.0075 1.6E-07 67.3 6.8 92 707-802 10-120 (160)
63 PF01602 Adaptin_N: Adaptin N 96.2 7.8 0.00017 51.5 38.4 171 511-739 352-522 (526)
64 KOG2171 Karyopherin (importin) 96.0 10 0.00023 52.9 34.9 291 485-800 146-463 (1075)
65 PLN03200 cellulose synthase-in 95.8 8 0.00017 58.0 34.6 465 161-718 417-934 (2102)
66 PTZ00429 beta-adaptin; Provisi 95.8 14 0.00031 51.1 39.3 144 144-312 65-210 (746)
67 KOG1242 Protein containing ada 95.5 7.6 0.00017 51.0 29.1 394 145-585 53-462 (569)
68 PF01602 Adaptin_N: Adaptin N 95.5 6.8 0.00015 52.1 30.5 56 250-308 51-106 (526)
69 KOG1241 Karyopherin (importin) 95.3 4.9 0.00011 53.6 26.5 356 199-589 373-786 (859)
70 PF12569 NARP1: NMDA receptor- 95.3 5.7 0.00012 52.7 27.9 157 1348-1559 227-390 (517)
71 KOG0915 Uncharacterized conser 95.3 24 0.00053 50.7 34.0 179 364-550 994-1182(1702)
72 PLN03081 pentatricopeptide (PP 95.2 9.4 0.0002 52.9 31.6 333 1041-1409 190-556 (697)
73 TIGR00540 hemY_coli hemY prote 95.2 8.3 0.00018 49.8 29.0 290 1117-1500 87-383 (409)
74 PRK10747 putative protoheme IX 95.0 9.8 0.00021 49.0 29.0 110 1349-1499 263-373 (398)
75 PF14559 TPR_19: Tetratricopep 94.9 0.059 1.3E-06 50.6 6.2 55 1126-1180 3-57 (68)
76 KOG0547 Translocase of outer m 94.7 8 0.00017 49.4 24.9 66 1120-1185 121-186 (606)
77 PLN03218 maturation of RBCL 1; 94.5 39 0.00083 49.0 34.7 326 1043-1409 440-782 (1060)
78 KOG0212 Uncharacterized conser 94.2 15 0.00033 47.7 26.2 293 197-552 7-303 (675)
79 KOG1062 Vesicle coat complex A 94.0 10 0.00022 51.1 24.9 37 272-308 98-134 (866)
80 KOG0213 Splicing factor 3b, su 94.0 31 0.00068 46.1 31.8 335 139-593 503-851 (1172)
81 PLN03200 cellulose synthase-in 93.3 62 0.0013 49.3 33.5 387 253-695 458-871 (2102)
82 PF13432 TPR_16: Tetratricopep 93.3 0.19 4E-06 46.9 6.0 60 1120-1179 3-62 (65)
83 TIGR02521 type_IV_pilW type IV 93.1 5.3 0.00011 45.5 19.1 151 1045-1208 36-194 (234)
84 KOG4626 O-linked N-acetylgluco 93.1 0.84 1.8E-05 58.8 12.7 189 1305-1542 117-319 (966)
85 PLN03218 maturation of RBCL 1; 92.9 68 0.0015 46.6 33.0 303 1043-1383 475-789 (1060)
86 TIGR02521 type_IV_pilW type IV 92.6 3 6.4E-05 47.6 16.1 151 1044-1207 69-227 (234)
87 PF13429 TPR_15: Tetratricopep 92.5 0.93 2E-05 55.1 12.3 221 1124-1409 54-276 (280)
88 PLN03088 SGT1, suppressor of 92.3 1.5 3.2E-05 55.6 13.9 112 1351-1500 4-117 (356)
89 KOG1248 Uncharacterized conser 92.2 71 0.0015 45.4 33.1 96 511-614 666-766 (1176)
90 PLN03077 Protein ECB2; Provisi 92.2 43 0.00092 47.7 29.8 322 1044-1409 393-719 (857)
91 PRK10370 formate-dependent nit 92.1 3.8 8.1E-05 47.6 15.9 115 1329-1485 57-176 (198)
92 PF13429 TPR_15: Tetratricopep 91.7 0.33 7.1E-06 59.0 7.0 165 1051-1235 88-260 (280)
93 KOG0495 HAT repeat protein [RN 91.3 28 0.00062 46.0 23.0 231 1349-1636 550-792 (913)
94 PRK15359 type III secretion sy 91.1 4.1 8.9E-05 44.7 14.2 107 1352-1496 27-135 (144)
95 PRK15179 Vi polysaccharide bio 91.0 3 6.4E-05 57.2 15.6 99 1045-1183 91-189 (694)
96 PF13414 TPR_11: TPR repeat; P 91.0 0.44 9.6E-06 44.8 5.6 54 1120-1173 9-63 (69)
97 COG3071 HemY Uncharacterized e 90.9 18 0.00038 45.5 20.3 97 1309-1408 289-388 (400)
98 PF12348 CLASP_N: CLASP N term 90.5 7.8 0.00017 45.6 16.8 177 511-739 19-204 (228)
99 PRK15359 type III secretion sy 90.3 3.2 7E-05 45.6 12.4 110 1372-1542 16-125 (144)
100 PRK11189 lipoprotein NlpI; Pro 90.3 12 0.00025 46.3 18.6 35 1348-1382 235-269 (296)
101 PRK09687 putative lyase; Provi 90.2 3 6.5E-05 51.1 13.3 58 6-70 25-82 (280)
102 PF10508 Proteasom_PSMB: Prote 89.7 86 0.0019 41.9 31.5 365 245-688 43-424 (503)
103 PF12688 TPR_5: Tetratrico pep 89.6 1.5 3.3E-05 46.7 8.8 83 1119-1201 6-93 (120)
104 TIGR02795 tol_pal_ybgF tol-pal 89.0 4.9 0.00011 41.3 12.1 103 1350-1487 3-110 (119)
105 PF13414 TPR_11: TPR repeat; P 88.9 1.3 2.8E-05 41.6 7.0 62 1348-1409 2-66 (69)
106 PF09295 ChAPs: ChAPs (Chs5p-A 88.5 4.4 9.6E-05 51.8 13.3 115 1344-1500 167-281 (395)
107 KOG0553 TPR repeat-containing 88.5 2.7 6E-05 50.8 10.7 98 1358-1493 90-189 (304)
108 PRK09782 bacteriophage N4 rece 88.3 12 0.00027 53.4 18.8 149 1045-1208 514-668 (987)
109 PRK12370 invasion protein regu 87.8 19 0.00041 48.5 19.5 109 1054-1174 318-432 (553)
110 PLN03081 pentatricopeptide (PP 87.7 1.4E+02 0.003 41.6 35.5 321 1044-1409 127-454 (697)
111 KOG1126 DNA-binding cell divis 87.6 66 0.0014 43.0 22.8 47 1126-1177 331-382 (638)
112 PRK15179 Vi polysaccharide bio 87.3 5.9 0.00013 54.4 14.3 112 1349-1498 86-199 (694)
113 PRK14574 hmsH outer membrane p 87.1 1.6E+02 0.0034 41.8 38.2 124 1045-1180 39-168 (822)
114 PF13371 TPR_9: Tetratricopept 86.8 1.2 2.6E-05 42.3 5.5 57 1123-1179 4-60 (73)
115 PLN03077 Protein ECB2; Provisi 86.6 1.7E+02 0.0038 41.7 37.7 317 1044-1408 292-616 (857)
116 smart00145 PI3Ka Phosphoinosit 86.0 3.2 6.9E-05 47.6 9.1 127 1526-1658 43-171 (184)
117 cd00189 TPR Tetratricopeptide 86.0 8.5 0.00018 36.2 11.0 59 1351-1409 2-62 (100)
118 PF12895 Apc3: Anaphase-promot 85.9 1.4 3.1E-05 43.4 5.5 78 1127-1206 2-81 (84)
119 TIGR02552 LcrH_SycD type III s 85.4 3.3 7.2E-05 44.1 8.6 86 1120-1206 23-108 (135)
120 PLN03088 SGT1, suppressor of 85.3 4.4 9.5E-05 51.4 10.9 89 1118-1207 6-94 (356)
121 cd00872 PI3Ka_I Phosphoinositi 85.0 4 8.6E-05 46.3 9.1 127 1526-1658 38-166 (171)
122 PF13646 HEAT_2: HEAT repeats; 84.5 5.2 0.00011 39.4 8.9 86 151-266 3-88 (88)
123 PRK11189 lipoprotein NlpI; Pro 84.4 20 0.00043 44.3 15.8 103 1347-1487 62-166 (296)
124 PF05918 API5: Apoptosis inhib 84.4 1.5E+02 0.0032 39.9 24.0 75 139-218 47-124 (556)
125 TIGR02795 tol_pal_ybgF tol-pal 84.0 4.5 9.7E-05 41.6 8.5 88 1120-1207 8-100 (119)
126 PF00613 PI3Ka: Phosphoinositi 83.5 5.2 0.00011 46.0 9.4 129 1527-1661 45-175 (184)
127 PF13432 TPR_16: Tetratricopep 83.4 5 0.00011 37.2 7.8 63 1385-1485 1-63 (65)
128 KOG0892 Protein kinase ATM/Tel 83.3 0.098 2.1E-06 76.3 -5.4 233 1762-2027 2174-2416(2806)
129 KOG1240 Protein kinase contain 83.1 5.8 0.00013 55.2 10.8 241 13-312 471-727 (1431)
130 KOG1129 TPR repeat-containing 82.8 28 0.00061 42.6 15.0 117 1045-1174 228-350 (478)
131 cd00189 TPR Tetratricopeptide 82.4 5.8 0.00013 37.3 8.1 85 1120-1205 6-90 (100)
132 PF12569 NARP1: NMDA receptor- 80.9 2.1E+02 0.0046 38.3 27.2 58 1351-1408 196-255 (517)
133 PRK13800 putative oxidoreducta 80.9 27 0.00059 49.9 17.0 212 6-308 623-834 (897)
134 KOG1241 Karyopherin (importin) 80.4 2.4E+02 0.0053 38.7 34.0 143 538-685 447-607 (859)
135 KOG4162 Predicted calmodulin-b 80.2 2.5E+02 0.0054 38.6 35.9 134 1349-1540 650-785 (799)
136 COG5181 HSH155 U2 snRNP splice 80.0 1.9E+02 0.0042 38.4 21.6 78 139-218 308-386 (975)
137 PRK13800 putative oxidoreducta 79.9 14 0.00031 52.6 13.8 210 5-308 653-865 (897)
138 KOG0624 dsRNA-activated protei 79.8 1.7E+02 0.0037 36.5 22.0 240 1121-1410 113-370 (504)
139 KOG1125 TPR repeat-containing 79.8 9.8 0.00021 49.6 10.7 115 1380-1554 429-555 (579)
140 cd00870 PI3Ka_III Phosphoinosi 79.6 4.1 9E-05 46.0 6.7 110 1527-1640 46-164 (166)
141 TIGR02552 LcrH_SycD type III s 79.5 37 0.00081 36.0 13.9 100 1350-1487 18-119 (135)
142 KOG0166 Karyopherin (importin) 79.0 2.3E+02 0.005 37.6 24.6 392 222-686 71-488 (514)
143 KOG1155 Anaphase-promoting com 78.9 15 0.00032 46.9 11.5 111 1388-1541 337-464 (559)
144 PRK12370 invasion protein regu 78.2 28 0.00062 46.9 15.2 123 1045-1179 343-472 (553)
145 KOG1156 N-terminal acetyltrans 78.2 2.6E+02 0.0057 37.7 31.4 61 1347-1407 403-465 (700)
146 PF05843 Suf: Suppressor of fo 78.1 14 0.00031 45.2 11.3 99 1351-1487 3-104 (280)
147 cd05804 StaR_like StaR_like; a 77.2 2E+02 0.0044 35.9 27.4 298 1090-1409 10-335 (355)
148 TIGR02906 spore_CotS spore coa 76.9 23 0.00049 43.6 12.9 30 1926-1957 185-214 (313)
149 PRK10370 formate-dependent nit 76.8 25 0.00055 40.8 12.3 39 1125-1163 84-123 (198)
150 PRK09687 putative lyase; Provi 76.3 75 0.0016 39.1 16.7 169 148-375 91-259 (280)
151 COG2956 Predicted N-acetylgluc 75.9 1.3E+02 0.0029 37.4 17.7 154 1045-1210 112-276 (389)
152 cd00869 PI3Ka_II Phosphoinosit 75.8 12 0.00025 42.5 8.7 112 1527-1643 39-153 (169)
153 PRK15363 pathogenicity island 75.3 19 0.00041 40.3 10.0 58 1100-1169 67-124 (157)
154 TIGR03302 OM_YfiO outer membra 74.7 39 0.00085 39.7 13.5 127 1044-1179 74-234 (235)
155 KOG0553 TPR repeat-containing 74.5 7.9 0.00017 47.0 7.4 76 1115-1190 82-157 (304)
156 KOG1242 Protein containing ada 74.2 3.2E+02 0.0069 36.8 25.9 348 158-546 106-463 (569)
157 TIGR03302 OM_YfiO outer membra 74.1 37 0.0008 39.9 13.2 112 1346-1490 30-152 (235)
158 PF12348 CLASP_N: CLASP N term 73.6 72 0.0016 37.5 15.3 144 150-311 56-207 (228)
159 PF12460 MMS19_C: RNAPII trans 73.6 2.8E+02 0.0061 36.1 21.9 128 165-305 164-293 (415)
160 PF13428 TPR_14: Tetratricopep 73.2 4.1 9E-05 35.2 3.6 32 1121-1152 8-39 (44)
161 PF13428 TPR_14: Tetratricopep 73.0 9.1 0.0002 33.0 5.6 41 1453-1495 3-43 (44)
162 PF09976 TPR_21: Tetratricopep 72.5 36 0.00077 37.2 11.6 58 1349-1406 48-110 (145)
163 CHL00033 ycf3 photosystem I as 72.2 50 0.0011 37.0 12.9 64 1346-1409 32-100 (168)
164 KOG1991 Nuclear transport rece 72.0 4.4E+02 0.0095 37.4 29.0 61 509-570 513-576 (1010)
165 cd00864 PI3Ka Phosphoinositide 71.9 9.7 0.00021 42.5 6.9 110 1527-1640 39-150 (152)
166 PF13371 TPR_9: Tetratricopept 71.9 12 0.00026 35.4 6.8 55 1356-1410 2-58 (73)
167 KOG1824 TATA-binding protein-i 71.3 4.5E+02 0.0097 37.2 52.3 199 421-633 494-703 (1233)
168 PF08767 CRM1_C: CRM1 C termin 70.7 2.1E+02 0.0045 36.0 19.0 222 536-799 67-296 (319)
169 PF07719 TPR_2: Tetratricopept 70.4 5.6 0.00012 31.7 3.5 28 1120-1147 7-34 (34)
170 KOG0168 Putative ubiquitin fus 70.1 69 0.0015 43.9 14.8 152 255-416 269-437 (1051)
171 PF12717 Cnd1: non-SMC mitotic 69.9 59 0.0013 37.1 12.9 84 254-351 1-84 (178)
172 PF12717 Cnd1: non-SMC mitotic 69.8 66 0.0014 36.7 13.3 111 163-293 3-113 (178)
173 PF05004 IFRD: Interferon-rela 69.5 1.1E+02 0.0025 38.1 16.3 106 495-613 153-258 (309)
174 PTZ00429 beta-adaptin; Provisi 69.3 4.8E+02 0.01 36.7 44.6 119 170-308 10-132 (746)
175 PRK10803 tol-pal system protei 69.3 55 0.0012 39.9 13.1 104 1349-1487 142-251 (263)
176 PF00515 TPR_1: Tetratricopept 69.1 5.8 0.00013 31.9 3.3 28 1120-1147 7-34 (34)
177 PF12755 Vac14_Fab1_bd: Vacuol 68.9 18 0.00039 37.3 7.6 92 516-615 3-96 (97)
178 PF14559 TPR_19: Tetratricopep 68.6 7.1 0.00015 36.4 4.4 51 1359-1409 1-53 (68)
179 cd00871 PI4Ka Phosphoinositide 68.6 7.4 0.00016 44.2 5.2 63 1578-1643 86-151 (175)
180 PF12530 DUF3730: Protein of u 67.9 1.2E+02 0.0026 36.2 15.5 169 155-355 8-185 (234)
181 PF04733 Coatomer_E: Coatomer 67.0 34 0.00074 42.3 11.0 148 1045-1210 107-263 (290)
182 KOG1156 N-terminal acetyltrans 66.5 4.7E+02 0.01 35.6 32.2 139 1047-1200 14-160 (700)
183 PF13575 DUF4135: Domain of un 66.5 38 0.00082 43.3 11.6 107 1780-1960 72-178 (370)
184 PRK02603 photosystem I assembl 66.5 85 0.0018 35.3 13.3 118 1382-1542 36-153 (172)
185 KOG1125 TPR repeat-containing 66.3 1.2E+02 0.0027 40.1 15.7 179 1328-1544 302-499 (579)
186 PF08569 Mo25: Mo25-like; Int 66.2 1.2E+02 0.0025 38.4 15.4 144 511-687 88-241 (335)
187 KOG2047 mRNA splicing factor [ 65.9 4.8E+02 0.01 35.5 35.4 98 1310-1409 348-453 (835)
188 KOG3060 Uncharacterized conser 65.7 14 0.00031 43.9 6.8 54 1121-1174 93-146 (289)
189 COG4783 Putative Zn-dependent 64.6 63 0.0014 41.9 12.5 127 1351-1501 342-470 (484)
190 PF04781 DUF627: Protein of un 63.5 27 0.00058 36.8 7.6 86 1386-1497 1-88 (111)
191 PF13646 HEAT_2: HEAT repeats; 63.5 39 0.00085 33.1 8.8 80 196-304 6-86 (88)
192 cd00020 ARM Armadillo/beta-cat 62.9 28 0.00061 35.7 8.0 101 198-309 15-119 (120)
193 PRK14574 hmsH outer membrane p 62.7 6.5E+02 0.014 35.9 38.8 148 1048-1209 76-229 (822)
194 KOG3365 NADH:ubiquinone oxidor 62.5 4.6 0.0001 43.1 1.9 38 2042-2095 92-129 (145)
195 KOG1173 Anaphase-promoting com 60.7 5.5E+02 0.012 34.4 20.7 246 1120-1409 250-517 (611)
196 KOG0547 Translocase of outer m 60.3 5.3E+02 0.011 34.1 25.5 122 1344-1496 423-546 (606)
197 cd05804 StaR_like StaR_like; a 59.9 1.6E+02 0.0035 36.8 15.5 151 1045-1208 48-211 (355)
198 PF10363 DUF2435: Protein of u 59.7 16 0.00035 37.3 5.2 76 655-747 3-78 (92)
199 PF13174 TPR_6: Tetratricopept 59.4 9.7 0.00021 30.0 2.9 28 1120-1147 6-33 (33)
200 PF04826 Arm_2: Armadillo-like 58.9 81 0.0018 38.3 11.8 176 240-431 12-202 (254)
201 PF14938 SNAP: Soluble NSF att 58.2 1.8E+02 0.0039 35.7 15.0 150 1087-1249 95-258 (282)
202 PF13176 TPR_7: Tetratricopept 57.9 7.1 0.00015 32.3 1.9 22 1121-1142 6-27 (36)
203 KOG1941 Acetylcholine receptor 57.9 29 0.00063 43.0 7.6 92 1045-1142 127-234 (518)
204 smart00299 CLH Clathrin heavy 57.8 1.3E+02 0.0029 32.4 12.4 88 1040-1139 7-94 (140)
205 KOG0495 HAT repeat protein [RN 57.8 6.5E+02 0.014 34.3 25.6 330 1123-1497 525-861 (913)
206 PF10274 ParcG: Parkin co-regu 57.7 12 0.00027 42.7 4.4 73 515-588 54-129 (183)
207 PF13424 TPR_12: Tetratricopep 55.7 43 0.00093 32.1 7.3 70 1383-1483 7-76 (78)
208 PLN03098 LPA1 LOW PSII ACCUMUL 55.7 28 0.0006 45.0 7.4 53 1122-1174 83-138 (453)
209 PRK02603 photosystem I assembl 55.6 1.1E+02 0.0025 34.3 11.8 65 1345-1409 31-100 (172)
210 PF13513 HEAT_EZ: HEAT-like re 55.3 25 0.00053 31.8 5.2 53 163-216 2-54 (55)
211 PF11698 V-ATPase_H_C: V-ATPas 55.1 37 0.00081 36.3 7.1 75 142-218 39-114 (119)
212 KOG1915 Cell cycle control pro 54.2 3.1E+02 0.0067 35.8 15.6 180 1349-1595 207-401 (677)
213 PF03704 BTAD: Bacterial trans 53.9 31 0.00068 37.5 6.8 53 1121-1173 69-121 (146)
214 CHL00033 ycf3 photosystem I as 53.9 96 0.0021 34.6 10.8 60 1121-1180 42-104 (168)
215 KOG2259 Uncharacterized conser 53.3 1.4E+02 0.003 40.2 12.9 125 161-312 386-513 (823)
216 KOG0211 Protein phosphatase 2A 53.2 2.1E+02 0.0045 40.0 15.4 252 10-308 361-623 (759)
217 PF12074 DUF3554: Domain of un 51.5 90 0.002 39.4 11.2 68 151-218 164-234 (339)
218 PF03378 CAS_CSE1: CAS/CSE pro 51.4 3E+02 0.0064 36.2 15.9 212 486-718 18-253 (435)
219 KOG0545 Aryl-hydrocarbon recep 51.4 53 0.0011 39.0 8.1 81 1098-1184 168-266 (329)
220 KOG0548 Molecular co-chaperone 51.1 1.5E+02 0.0033 39.0 12.7 141 1047-1202 305-445 (539)
221 PF13431 TPR_17: Tetratricopep 50.1 15 0.00032 30.3 2.6 32 1136-1167 1-32 (34)
222 KOG0624 dsRNA-activated protei 50.1 6.3E+02 0.014 31.9 18.7 69 1345-1413 219-301 (504)
223 KOG0168 Putative ubiquitin fus 49.5 2.2E+02 0.0048 39.4 14.1 155 512-679 181-359 (1051)
224 PF02985 HEAT: HEAT repeat; I 49.1 26 0.00056 28.1 3.8 26 194-219 4-29 (31)
225 PF05804 KAP: Kinesin-associat 48.8 9.6E+02 0.021 33.6 35.6 205 282-504 291-519 (708)
226 KOG1240 Protein kinase contain 48.3 2E+02 0.0044 41.2 13.9 160 148-312 463-648 (1431)
227 KOG2002 TPR-containing nuclear 47.9 1.1E+03 0.023 33.9 23.6 225 1130-1412 146-373 (1018)
228 PF14938 SNAP: Soluble NSF att 47.6 5.1E+02 0.011 31.8 16.6 110 1347-1487 33-149 (282)
229 PF12895 Apc3: Anaphase-promot 47.5 41 0.00088 33.0 5.8 59 1348-1407 24-84 (84)
230 KOG1243 Protein kinase [Genera 47.5 1.4E+02 0.0031 40.5 12.0 200 486-746 243-443 (690)
231 PF09295 ChAPs: ChAPs (Chs5p-A 46.9 2.2E+02 0.0047 37.0 13.5 107 1053-1174 182-294 (395)
232 KOG4234 TPR repeat-containing 46.6 1.2E+02 0.0026 35.2 9.7 79 1389-1500 103-181 (271)
233 PF08569 Mo25: Mo25-like; Int 46.2 2.3E+02 0.0049 36.0 13.2 94 472-568 182-284 (335)
234 KOG1058 Vesicle coat complex C 45.4 1.6E+02 0.0034 40.2 11.8 139 165-340 223-362 (948)
235 PF12719 Cnd3: Nuclear condens 45.1 2.8E+02 0.0062 34.3 13.9 141 198-379 35-189 (298)
236 PF13513 HEAT_EZ: HEAT-like re 45.0 37 0.0008 30.6 4.7 55 669-739 1-55 (55)
237 cd05145 RIO1_like RIO kinase f 44.7 26 0.00057 40.1 4.5 25 1932-1958 141-165 (190)
238 KOG2002 TPR-containing nuclear 44.5 1.2E+03 0.026 33.5 32.1 65 1119-1183 312-377 (1018)
239 PF13424 TPR_12: Tetratricopep 44.0 52 0.0011 31.5 5.9 63 1347-1409 3-74 (78)
240 PF04733 Coatomer_E: Coatomer 43.4 40 0.00086 41.7 6.1 62 1119-1180 206-268 (290)
241 KOG4162 Predicted calmodulin-b 43.1 1.1E+02 0.0025 41.6 10.2 76 1089-1164 653-734 (799)
242 KOG0946 ER-Golgi vesicle-tethe 43.1 1.1E+03 0.025 32.9 36.2 284 232-566 74-398 (970)
243 cd03567 VHS_GGA VHS domain fam 43.0 2.9E+02 0.0064 30.5 11.9 65 631-697 16-80 (139)
244 KOG0550 Molecular chaperone (D 42.9 77 0.0017 40.4 8.2 124 1121-1252 256-383 (486)
245 PF13181 TPR_8: Tetratricopept 42.5 24 0.00053 28.1 2.8 27 1120-1146 7-33 (34)
246 PRK10153 DNA-binding transcrip 42.0 2.4E+02 0.0052 37.9 13.3 69 1381-1488 420-488 (517)
247 KOG0608 Warts/lats-like serine 41.7 21 0.00045 47.1 3.3 39 1919-1958 739-777 (1034)
248 TIGR03843 conserved hypothetic 40.3 25 0.00055 41.7 3.4 45 1919-1964 134-178 (253)
249 cd05147 RIO1_euk RIO kinase fa 40.1 16 0.00035 42.1 1.9 24 1933-1958 142-165 (190)
250 KOG0548 Molecular co-chaperone 39.8 65 0.0014 42.2 7.1 83 1119-1202 7-89 (539)
251 PF12755 Vac14_Fab1_bd: Vacuol 39.8 1.2E+02 0.0025 31.4 7.8 82 262-351 7-89 (97)
252 KOG1174 Anaphase-promoting com 39.7 84 0.0018 39.9 7.8 88 1045-1172 305-392 (564)
253 KOG2032 Uncharacterized conser 39.6 4.7E+02 0.01 34.5 14.3 175 513-695 272-480 (533)
254 PF08167 RIX1: rRNA processing 38.9 2.4E+02 0.0052 31.9 10.9 89 496-592 69-164 (165)
255 PF13431 TPR_17: Tetratricopep 38.9 31 0.00068 28.3 2.9 24 1476-1499 2-25 (34)
256 COG3063 PilF Tfp pilus assembl 38.1 3.4E+02 0.0074 32.6 11.9 113 1347-1495 67-181 (250)
257 KOG0616 cAMP-dependent protein 38.1 46 0.001 40.7 5.1 48 1902-1958 140-192 (355)
258 KOG1020 Sister chromatid cohes 38.0 1.7E+03 0.038 33.5 25.2 103 142-247 807-921 (1692)
259 cd03568 VHS_STAM VHS domain fa 37.5 3.3E+02 0.0072 30.2 11.4 64 632-697 16-79 (144)
260 PRK10866 outer membrane biogen 37.4 3.4E+02 0.0074 32.7 12.6 64 1349-1412 32-100 (243)
261 cd05153 HomoserineK_II Homoser 37.0 4.1E+02 0.0089 32.4 13.6 29 1927-1956 174-202 (296)
262 KOG1248 Uncharacterized conser 37.0 1.6E+03 0.035 32.9 30.4 163 444-622 735-906 (1176)
263 cd05151 ChoK Choline Kinase (C 36.4 26 0.00056 38.7 2.7 29 1927-1957 106-134 (170)
264 COG4235 Cytochrome c biogenesi 36.4 2.8E+02 0.0061 34.2 11.5 76 1330-1409 141-221 (287)
265 KOG2160 Armadillo/beta-catenin 36.3 3.7E+02 0.0081 34.0 12.6 160 166-342 101-264 (342)
266 smart00288 VHS Domain present 35.6 3.9E+02 0.0084 29.2 11.5 64 632-697 16-79 (133)
267 PF12487 DUF3703: Protein of u 35.5 1.3E+02 0.0029 31.9 7.3 58 1352-1409 12-75 (112)
268 KOG1126 DNA-binding cell divis 34.9 2.5E+02 0.0054 38.0 11.3 113 1350-1500 490-604 (638)
269 PF00790 VHS: VHS domain; Int 34.8 3.3E+02 0.0071 29.9 10.9 48 650-697 37-84 (140)
270 smart00028 TPR Tetratricopepti 34.7 52 0.0011 24.1 3.5 27 1120-1146 7-33 (34)
271 PLN03098 LPA1 LOW PSII ACCUMUL 34.5 1.2E+02 0.0026 39.6 8.3 66 1344-1409 70-140 (453)
272 PRK15363 pathogenicity island 34.0 2.4E+02 0.0051 31.9 9.5 46 1124-1169 45-90 (157)
273 KOG1020 Sister chromatid cohes 34.0 2E+03 0.043 33.0 35.4 125 171-312 799-923 (1692)
274 PRK10866 outer membrane biogen 33.7 81 0.0018 38.0 6.5 61 1121-1181 39-102 (243)
275 COG3118 Thioredoxin domain-con 33.4 3.4E+02 0.0073 33.7 11.3 53 1121-1173 141-193 (304)
276 PF04118 Dopey_N: Dopey, N-ter 33.3 7.4E+02 0.016 31.1 14.7 168 513-687 22-204 (307)
277 PF08167 RIX1: rRNA processing 33.0 2.5E+02 0.0054 31.7 9.9 121 144-271 22-144 (165)
278 COG3063 PilF Tfp pilus assembl 33.0 4.1E+02 0.009 31.9 11.5 43 1123-1167 78-122 (250)
279 PRK10803 tol-pal system protei 32.8 1.6E+02 0.0036 35.9 8.9 56 1126-1181 155-213 (263)
280 PF13525 YfiO: Outer membrane 32.7 6.6E+02 0.014 29.2 13.7 86 1380-1500 4-92 (203)
281 KOG1128 Uncharacterized conser 32.5 2.8E+02 0.0061 38.0 11.3 139 1043-1204 401-540 (777)
282 cd03561 VHS VHS domain family; 32.4 4.5E+02 0.0097 28.6 11.4 63 632-696 16-78 (133)
283 KOG2003 TPR repeat-containing 32.0 4.6E+02 0.01 33.7 12.2 94 1087-1180 593-692 (840)
284 cd03572 ENTH_epsin_related ENT 31.8 3.4E+02 0.0073 29.4 9.9 76 652-739 35-117 (122)
285 KOG1586 Protein required for f 31.8 3.7E+02 0.0079 32.3 10.7 114 1339-1484 24-145 (288)
286 cd00020 ARM Armadillo/beta-cat 31.6 1.9E+02 0.0041 29.5 8.2 107 152-268 12-118 (120)
287 PF12460 MMS19_C: RNAPII trans 31.6 1.3E+03 0.028 30.1 27.3 72 515-590 339-413 (415)
288 COG0661 AarF Predicted unusual 31.4 30 0.00064 46.1 2.5 25 1932-1957 288-312 (517)
289 TIGR03724 arch_bud32 Kae1-asso 31.0 34 0.00074 39.0 2.6 24 1932-1957 113-136 (199)
290 PF14853 Fis1_TPR_C: Fis1 C-te 30.8 59 0.0013 29.8 3.5 30 1121-1150 8-37 (53)
291 PF10602 RPN7: 26S proteasome 30.3 1.4E+02 0.003 34.3 7.3 52 1121-1172 43-97 (177)
292 KOG1173 Anaphase-promoting com 30.2 2.7E+02 0.0059 37.0 10.4 97 1045-1174 419-515 (611)
293 PF05843 Suf: Suppressor of fo 30.1 3E+02 0.0066 33.8 10.8 103 1349-1486 35-140 (280)
294 PHA02768 hypothetical protein; 30.0 20 0.00044 33.0 0.4 16 106-121 3-18 (55)
295 COG5010 TadD Flp pilus assembl 29.8 5.4E+02 0.012 31.4 12.0 151 1347-1558 65-219 (257)
296 PF05918 API5: Apoptosis inhib 29.7 77 0.0017 42.4 5.7 62 514-575 283-349 (556)
297 KOG1840 Kinesin light chain [C 29.6 3.7E+02 0.008 36.1 11.8 145 1325-1501 261-416 (508)
298 KOG0414 Chromosome condensatio 29.4 89 0.0019 44.4 6.3 121 243-396 925-1046(1251)
299 PF02985 HEAT: HEAT repeat; I 28.9 86 0.0019 25.1 3.8 28 657-684 2-29 (31)
300 PF06552 TOM20_plant: Plant sp 28.8 2.5E+02 0.0054 32.4 8.7 63 1469-1542 51-113 (186)
301 PF09324 DUF1981: Domain of un 28.8 1.2E+02 0.0026 30.6 5.7 53 509-561 28-82 (86)
302 cd03569 VHS_Hrs_Vps27p VHS dom 28.8 5.7E+02 0.012 28.3 11.5 63 632-696 20-82 (142)
303 PF09477 Type_III_YscG: Bacter 28.7 1.7E+02 0.0036 30.9 6.6 74 1130-1211 22-97 (116)
304 cd00197 VHS_ENTH_ANTH VHS, ENT 28.1 6.9E+02 0.015 26.2 11.7 75 621-697 5-79 (115)
305 PF13251 DUF4042: Domain of un 27.8 9E+02 0.02 28.0 13.1 162 603-798 3-174 (182)
306 PLN02789 farnesyltranstransfer 27.1 4.5E+02 0.0097 33.1 11.6 56 1125-1180 117-174 (320)
307 KOG0414 Chromosome condensatio 27.0 1.1E+03 0.023 34.6 15.6 43 656-698 360-408 (1251)
308 PF13525 YfiO: Outer membrane 26.9 1.2E+02 0.0026 35.3 6.2 62 1120-1181 11-75 (203)
309 cd00256 VATPase_H VATPase_H, r 26.6 1.6E+03 0.035 29.6 24.7 115 146-270 52-173 (429)
310 PF11698 V-ATPase_H_C: V-ATPas 26.4 1.1E+02 0.0024 32.9 5.1 28 659-686 90-117 (119)
311 PRK10359 lipopolysaccharide co 26.3 40 0.00087 40.3 2.2 23 1933-1957 159-181 (232)
312 KOG3081 Vesicle coat complex C 26.3 1.4E+02 0.003 36.3 6.4 63 1117-1179 210-273 (299)
313 PRK04750 ubiB putative ubiquin 26.0 38 0.00081 45.4 2.0 26 1931-1957 282-311 (537)
314 KOG0166 Karyopherin (importin) 25.9 1.6E+03 0.036 30.1 16.4 143 153-311 157-309 (514)
315 KOG4413 26S proteasome regulat 25.8 4.6E+02 0.0099 32.6 10.5 118 140-269 27-156 (524)
316 KOG0212 Uncharacterized conser 25.6 1.8E+03 0.039 29.9 25.4 169 487-691 201-372 (675)
317 cd05119 RIO RIO kinase family, 25.2 46 0.001 37.5 2.4 26 1932-1959 138-163 (187)
318 PRK14879 serine/threonine prot 25.1 51 0.0011 37.9 2.7 24 1932-1957 118-141 (211)
319 PF14500 MMS19_N: Dos2-interac 24.9 9.2E+02 0.02 29.5 13.4 132 509-657 9-142 (262)
320 PF01636 APH: Phosphotransfera 24.6 45 0.00098 38.5 2.2 32 1926-1957 164-195 (239)
321 cd05144 RIO2_C RIO kinase fami 24.5 57 0.0012 37.5 2.9 31 1930-1961 146-176 (198)
322 smart00638 LPD_N Lipoprotein N 24.4 1.9E+03 0.041 29.7 20.0 153 513-678 411-572 (574)
323 KOG2076 RNA polymerase III tra 24.4 2.2E+03 0.049 30.6 27.3 82 1380-1498 413-494 (895)
324 TIGR01982 UbiB 2-polyprenylphe 23.6 52 0.0011 43.1 2.7 25 1932-1957 280-304 (437)
325 PF00515 TPR_1: Tetratricopept 23.4 1.8E+02 0.0039 23.1 4.8 33 1451-1485 1-33 (34)
326 PF12688 TPR_5: Tetratrico pep 23.1 9.6E+02 0.021 25.8 13.3 61 1351-1411 3-68 (120)
327 KOG3060 Uncharacterized conser 23.0 1E+03 0.022 29.1 12.5 105 1361-1501 132-239 (289)
328 PLN02789 farnesyltranstransfer 22.6 1.6E+03 0.035 28.2 17.0 117 1346-1499 34-154 (320)
329 KOG0567 HEAT repeat-containing 22.3 3E+02 0.0065 33.6 8.1 64 654-741 186-249 (289)
330 KOG2053 Mitochondrial inherita 22.3 5.1E+02 0.011 36.4 11.1 102 1052-1166 21-128 (932)
331 PF01603 B56: Protein phosphat 22.2 1.2E+03 0.026 30.5 14.5 81 655-748 297-377 (409)
332 KOG0211 Protein phosphatase 2A 22.2 5.1E+02 0.011 36.4 11.4 176 8-267 522-699 (759)
333 smart00755 Grip golgin-97, Ran 21.8 1.2E+02 0.0025 27.3 3.5 38 143-182 2-39 (46)
334 KOG4524 Uncharacterized conser 21.8 1.6E+03 0.035 32.2 15.6 71 262-340 569-641 (1014)
335 COG5240 SEC21 Vesicle coat com 21.6 2.1E+03 0.046 29.3 35.1 105 471-619 395-502 (898)
336 PF07721 TPR_4: Tetratricopept 21.4 1.1E+02 0.0023 23.6 2.9 25 1381-1405 1-25 (26)
337 PF01465 GRIP: GRIP domain; I 21.3 89 0.0019 27.9 2.8 39 143-182 3-41 (46)
338 smart00638 LPD_N Lipoprotein N 20.7 4.7E+02 0.01 35.6 10.9 180 4-215 358-541 (574)
339 cd00180 PKc Catalytic domain o 20.7 7.2E+02 0.016 27.2 10.9 29 1930-1958 113-141 (215)
340 cd04792 LanM-like LanM-like pr 20.7 7.8E+02 0.017 35.1 13.5 104 1780-1960 115-218 (825)
341 smart00090 RIO RIO-like kinase 20.7 64 0.0014 38.6 2.4 28 1932-1961 172-199 (237)
342 PF07719 TPR_2: Tetratricopept 20.4 1.8E+02 0.004 22.8 4.3 26 1384-1409 4-29 (34)
343 PF09976 TPR_21: Tetratricopep 20.3 1.1E+03 0.024 25.5 13.6 76 1124-1201 58-136 (145)
344 COG1729 Uncharacterized protei 20.0 7.4E+02 0.016 30.4 10.9 102 1352-1488 144-250 (262)
No 1
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.7e-278 Score=2718.16 Aligned_cols=1908 Identities=37% Similarity=0.595 Sum_probs=1603.2
Q ss_pred hhhhhhhchhhhhhhcCccchHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCccccccccccccccccccccccccc
Q 000134 20 VRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDKNACKLLLNVEDDILS 99 (2096)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (2096)
++.-|-+|+| ..++-+....||.+|+.+..+....++|-+++.+||+.|+++.. ....+...|+.|... .....
T Consensus 444 ~~~v~~~sl~---~~~~~~~~l~~~~~ll~~~~~~~~~~~~~~~~~~v~llC~~~~~--~~~~~~t~~~~~~~~-~~~~~ 517 (2382)
T KOG0890|consen 444 IQEVAEMSLP---SLSQYIRILNMFEKLLLKLSDDLQNIKKDFAQILVFLLCTKQGK--ENYSEKTITKYFLCH-GLQKL 517 (2382)
T ss_pred HHHHHHhccc---hhcccchhccccHHHHHHhcccccccchhhhhheEEEeeccccc--cCchhhhhhhhhhcc-ccccc
Confidence 8888999999 55666667788888999999999999999999999999999754 566788899988872 22222
Q ss_pred ccHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhcccCccchhhHHHHHHHHHHccC
Q 000134 100 QTVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHG 179 (2096)
Q Consensus 100 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~ 179 (2096)
.. +.++.|++|++.. +...-.+....+......+..++... +...++..++|++++++..++..+-|.
T Consensus 518 ~~----l~~~~l~~c~~~~----~~~~~~~~~~~~~~i~~~~~~d~~~~----~~~~~n~~~~e~~~~~~~~~r~~ll~t 585 (2382)
T KOG0890|consen 518 FC----LAANSLSKCKKEL----EEAFLSPPSLEMVKIDYEFLLDLFFG----INQHLNTFSKETQVSFVETIRTMLLHT 585 (2382)
T ss_pred cc----cccchhccCcccc----hhhhcCCCcHHHHhhhhhhccchHHh----HHHHhhhhHHHHHHHHHHHHHHHHhcC
Confidence 22 9999999999432 12222222222333344444554443 677889999999999999999999999
Q ss_pred CchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHHHHHHHHHhhhcCCh--hH
Q 000134 180 TRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDP--LI 257 (2096)
Q Consensus 180 ~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~i 257 (2096)
+....+.++.. .+ .+.+ ..|+.+...++..+.+.|.+.-.+...+. ...++.-+.+.....+|- -.
T Consensus 586 t~~~~~~~~~~------~~-~~~~----~~Fle~~~~l~~~~~~~~~~~~~~~~~k~-~~~~~~ll~~~~~~~~d~~~l~ 653 (2382)
T KOG0890|consen 586 TSKIVLFARSS------II-VALD----IGFLEQLNNLVRVEILVCLRSELTVTLKN-LRMYTNLLEISFAALSDDAALF 653 (2382)
T ss_pred Ccceeeeecch------hh-hccc----hHHHHhhhhhHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHhhcchhHHH
Confidence 97765555444 12 3444 77999999988888888888766544443 566777777766666663 67
Q ss_pred HHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccchhhhhhhhhhHH-HH
Q 000134 258 LETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDY-LS 336 (2096)
Q Consensus 258 ~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~-~~ 336 (2096)
.++.|..+-..+.++.+..|+|..++-+++.|+++.+..++ . +++...++++..++...+|.- ++
T Consensus 654 i~~~L~~~~s~~~~~~v~~~lf~~~~~~~a~q~~~~~~~~s-~-------------~~~~~~~l~~~~~~~~~i~~~~~~ 719 (2382)
T KOG0890|consen 654 IHHTLHFVLSARISSVVKSELFLSILGLLALQNVKINVNVS-T-------------VGNKAEALGYTSKIYLDIFQRDIL 719 (2382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeee-c-------------chhHHHHhhhHHHHHHHHHHhhhh
Confidence 78888888888888999999999999999999999999999 3 455566667776665555555 66
Q ss_pred HHhcCchHHHHHHHHHHhCCChHHHHHhhcccccchhhhccccChhHHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhcc
Q 000134 337 VRLASRPIMVREFAEAAFGVETEELVKKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQ 416 (2096)
Q Consensus 337 ~~l~~rp~~~~~~~e~llg~~~~~fL~~~~~~~LP~LVl~~~~~~~~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~ 416 (2096)
-+..++|..+.+++....+...+++++.+++++||.++....+ ++..+++............++.+ ++.|+++++++
T Consensus 720 ~~~~~~~n~~~~~~~~~~~~~~~~~~r~~~~~~Lp~~~~~~~~--~a~~~vr~~~~~i~~l~~~~~~n-~~~i~~~~~~t 796 (2382)
T KOG0890|consen 720 NRLFSDPNSASEFAPAYVEHEGRELLRCLLAVVLPDLNFPNQK--IAVAIVRPLLKYISTLSSLLLIN-LTLIYTHLLCT 796 (2382)
T ss_pred hHHHhhhhhhhhhcchhhccchHHHHHHHHHHhcchhhccccH--HHHHHHHHhhhhhhHHHHHHhcC-chhhhchHhhh
Confidence 7778999999999987888888999999999999999999765 56667777666666666666656 99999999999
Q ss_pred ccHHHHHHHHHHHhhhcCCChHHHHHHhhHHHHHHHHHhhcCCCchhHhhhhcchhHHHHHHhhhccCCCChhhhhHHHH
Q 000134 417 ADERRLLSALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHF 496 (2096)
Q Consensus 417 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~eLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~ 496 (2096)
+.+++..+++++++.+.++++++.+.+..+..+.||+++......-+..+...+-...+..-.+..+.++.+.+|+++|+
T Consensus 797 ~~~~~~~sv~~l~~~~~~s~l~~~~~~e~~~~~~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~e~~~~fl~~~l 876 (2382)
T KOG0890|consen 797 EEPNNLESVISLLKLRIGSDLRESLISETFALLVELLRFYNNNFTPEKRKFSSRKCDFIDEDIRTLISSELFQDFLQNHL 876 (2382)
T ss_pred ccchhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhccCcHHHHhhhhhhhhhhhccchhcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999877766555432221222223222345566788999999999
Q ss_pred HHHHHHhhhhhcCCCC-hHHHHHHHHHHHHHHHHhcc-ccccchhhHHHHHHH-HhcCCCcchhhhHHHHHHHHHhccCC
Q 000134 497 VGLLNSIDRKMLHAED-LSLQKQALKRIEILIEMIGS-HLTTYVPKILVLLMH-AINKESLQCEGLSVLHFFIEQLSRVS 573 (2096)
Q Consensus 497 LGil~~~~~~l~~~~~-~~~k~~~l~sl~~li~l~g~-~v~~~~pqI~a~L~~-aL~~~~L~~~~l~~W~~fv~~L~~~~ 573 (2096)
|||+++|+.++++++. +..|++++.+|+.+|++||+ ||++++|||+.+|++ +++.++++..|++||+.|++.+.+.
T Consensus 877 lgil~~f~~~l~~~~~~~~~k~~tl~~I~~~i~~~g~~~v~~~~~~i~~~L~~~~~~~~~l~~~~~~~w~~f~r~l~~~- 955 (2382)
T KOG0890|consen 877 LGILAVFSSRLLEPSTIIEQKKKTLKGIKKLISFMGSKAVSTRLPKIEFLLQFGTLFKDELRFLALKAWHIFIRILNDN- 955 (2382)
T ss_pred HHHHHHHHHhhcCcchHHHHHHHHHHhHHHHHhhccHHHHHHHhHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHhhh-
Confidence 9999999999988775 45789999999999999995 999999999999999 7999999999999999999999864
Q ss_pred CcchhhHHHH-HHHHhhhccccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCChhhhHHHHHHHHHhcCCCC
Q 000134 574 PSSTKHVISQ-VFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMT 652 (2096)
Q Consensus 574 ~~~l~~ll~~-i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~l~~v~~~l~~~r~~~~ 652 (2096)
..+++++. |+++++|+++.. ..+.+..++++|+.+|++.+...+.++|.+|++|++......++..|+..+
T Consensus 956 --~~~~~~~~~i~~~l~p~l~~~------~~~~v~~i~~~i~~~~~d~i~~~~~~~~~l~~~p~~~~~~~~~~~~r~~~~ 1027 (2382)
T KOG0890|consen 956 --EKSDILDRNIIAALFPLLEHI------ELNLVSSILDFISLDNRDNIQILKSDIPILPSIPELGNLKAAIQEARGLLS 1027 (2382)
T ss_pred --hhcchhhhHHHHHHHHHhccc------cHHHHHHHHHHHHHhhHHHHHhhhccccccCCchHHHHHHHHHHHHHhhcc
Confidence 45566666 899999999622 258899999999999999999999999999999999999999999998766
Q ss_pred ---HHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHH
Q 000134 653 ---LKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLK 729 (2096)
Q Consensus 653 ---l~~~l~~~~~~l~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~ 729 (2096)
+.++++.|++.+.|||..||++++++|+.++.+++ ++......+.....+.+++|+++||+||.++. .+++
T Consensus 1028 ~~~l~~~l~~~~~~~~~enl~vr~~~l~~l~~~~~k~~-e~~~~~~~~~~~~~~~l~ql~~~Ll~gc~k~~-----~~~~ 1101 (2382)
T KOG0890|consen 1028 EDDLDDQLRDFMKKLKHENLPVRVEKLQDLEFLIGKNR-EKLDVLALKELGPEEDLSQLLTVLLDGCQKKT-----SQLE 1101 (2382)
T ss_pred ccchhhhhHHHHHHhHhhhhHHHHHHHHHHHHHHhhhh-hHhhhhhhhhcccchhHHHHHHHHHHHHHHHH-----HHHH
Confidence 78999999999999999999999999999999554 45554444333233679999999999999975 4899
Q ss_pred HHHHHhhcccCccCccccccccccc----cc---ccccCh--hhHHHHHHHHHHHHHHcCCChhhHhHHHHHHHHHHHHc
Q 000134 730 LVCADCLGALGAVDPAKVKGFSCQR----FK---IECSDD--DLIFELIDKHLARAFRAAPDTIIQDSAALAIQELLKIA 800 (2096)
Q Consensus 730 ~lca~CLG~IGalDp~r~~~~~~~~----~~---~~~~~~--~f~~~ll~~~Lv~af~s~~dt~~Q~~~A~AiQElLk~~ 800 (2096)
++||+|||+||||||++..++.++. .. .++.+. .| .++....++++|+-..|+..|++++|++||.|+..
T Consensus 1102 ~~~akcLg~lgaidp~~~~~k~q~~i~~~~~~~~~~~~~~~i~~-~~~~~~~l~~~~~~~~~~~~q~~~~~~~qe~l~~~ 1180 (2382)
T KOG0890|consen 1102 ELCAKCLGELGAIDPSCHRFKEQETIPSILQVLPIECSDLPIKF-IDFAWDTLVKAFLCEPDQLKQDVVAYAIQEVLVLG 1180 (2382)
T ss_pred HHHHHHHHhhhccCchhhhhhcccccchhhhccccccCchhhhh-HHHHHHHHHHHHhcCcChhhhhHHHHHHHHHHHHh
Confidence 9999999999999999887765432 11 122222 24 57888899999999999999999999999999955
Q ss_pred CCCcccccCcchhhhhhhccccchhhhcccCCCCCchhhhchhhh-HHHHhhchhHHHHhccccccccccC-CCCCCCCC
Q 000134 801 GCEASLDENVPASILQVLKDKEHLTVVASGTMGSDNIHEMNMRGR-KFWDRFSIYVKEIIAPCLTSRFQLP-SGSDSVST 878 (2096)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~W~~~p~~~r~~l~P~ltS~Y~~~-~~~~~~~~ 878 (2096)
||+. .. ...++. ++|++||+++|+++.|+|+|||+.+ +.++....
T Consensus 1181 ~~~n-~e--------------------------------~~~~~~~elW~~Fp~~~k~~~~P~L~s~Y~sq~~~p~~~~k 1227 (2382)
T KOG0890|consen 1181 GSSN-IE--------------------------------PLDRGMCELWERFPNEVKEEMEPTLTSRYASQKPEPSVGEK 1227 (2382)
T ss_pred cccc-Cc--------------------------------cCCccHHHHHHHhHHHHHHHHhhcccchhccCCCCCCcccc
Confidence 5541 00 001344 8999999999999999999999943 34456789
Q ss_pred CCcccCCCChHHHHHHHHHHHHhhhcCCch-hHHHHhhhhhhccHhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 000134 879 GPIYLPSMSFRRWIYYWIRKLTVHATGSRA-SIFNACRGIVRHDMQTAIYLLPYLVLNAVCHGTEEARLGIAQEILSVLD 957 (2096)
Q Consensus 879 ~Pi~~~~~sy~~Wl~~w~~~L~~~~~~~~~-~iF~~c~~iir~D~~ia~fLLPylvl~il~~g~~e~~~~I~~Ei~~VL~ 957 (2096)
+|||++...|++|+..|+.+|+.+++++.+ +||++|+.++++|..++.|||||++++|++.+++++|+.|.+||++||+
T Consensus 1228 ~Piy~~~lg~~eW~~~w~~~Li~ka~~s~~~~ifs~cs~~~k~D~~~t~fLlP~ill~vll~~~~e~~~~V~~eil~vl~ 1307 (2382)
T KOG0890|consen 1228 KPIYKSSLGYREWLSRWSLKLIAKAESSEASPLFSLCSIIVKDDFKVTRFLLPYILLDVLLVCEEEDRNSVTEEILSVLD 1307 (2382)
T ss_pred cccccccccHHHHHHHHHHHHHHhccccccchHHHHHHHHHhccchhHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHh
Confidence 999999999999999999999999887765 7999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcccCCCchhhhHHHHHHHHHHhhhHHHHHHHHHhhhhhcchhcccCCCCCCCCCcchhhHHHHHhhhHhhh
Q 000134 958 AAASDHSGASVHGISGQSEVCIQAIFTLLDNLGQWVDDVKQELALSESLTSKQQGSKSKHPASSMHQDQLLTQCQYVSGL 1037 (2096)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~~~~~q~vF~vlD~l~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~f 1037 (2096)
++.+..-+ +.. . ...++|+|+||+++||+++|.|+++|.........+|-.+.. .+...++..+ ..+..|++|
T Consensus 1308 ~~~~~t~n-s~~-~-~~d~~~~~~VF~~ld~l~qw~r~~~q~~~~~k~~~sk~~R~~-~~~~~~Tt~~---~~~~~v~~f 1380 (2382)
T KOG0890|consen 1308 EAATNTIN-SRG-T-ASDRLCVQFVFYVLDYLYQWARHKKQELAEKKKIWSKVNRFW-KSIMSWTTTG---EDIEGVQSF 1380 (2382)
T ss_pred cccccccc-ccc-c-cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhhh-eeeeccccCC---CchhhhHHH
Confidence 98665221 111 1 122899999999999999999999988765433223322200 0111111111 235679999
Q ss_pred ccCCCHHHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHH-HhccCC
Q 000134 1038 LSAIPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLAR-LHKSLS 1116 (2096)
Q Consensus 1038 L~~Ip~~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~-~~~~~s 1116 (2096)
|+.||..+||+||++|++|+||+||+|+| +.. +++....+..+..||.+|+.|+||||++|+++ ..+.++
T Consensus 1381 L~~iP~~tLa~aSfrc~~y~RalmylEs~-~~~--------ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s 1451 (2382)
T KOG0890|consen 1381 LDLIPSDTLARASFRCKAYARALMYLESH-RST--------EKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS 1451 (2382)
T ss_pred HhhccHHHHHHHHHhhHHHHHHHHHHHHh-ccc--------cchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc
Confidence 99999999999999999999999999998 211 22223333456667779999999999999999 467899
Q ss_pred hhHHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhc
Q 000134 1117 LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRL 1196 (2096)
Q Consensus 1117 l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrl 1196 (2096)
+.+||++||+.|+|.+|++|||+++|.+|++..++.|+++|+.++||+++++++++|+..+.+++.++|+..++||||++
T Consensus 1452 l~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l 1531 (2382)
T KOG0890|consen 1452 LYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRL 1531 (2382)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHhhcccCccCccccCCCCCcchhHH-HHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchh-hHHhhhHHH
Q 000134 1197 GRWDLMDEYLSGADEEGLLCSSSESNASFDMD-VAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMD-SYTRAYPFI 1274 (2096)
Q Consensus 1197 g~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~-l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~e-Sy~r~y~~l 1274 (2096)
|+||.+++++. +. ....|... +|+++++..++|...+.+.|+.+|..++.++++.+.+ ||+|+|+++
T Consensus 1532 ~qwD~~e~~l~--~~---------n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~ 1600 (2382)
T KOG0890|consen 1532 SQWDLLESYLS--DR---------NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEIL 1600 (2382)
T ss_pred cchhhhhhhhh--cc---------cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHH
Confidence 99999999987 33 34678888 9999999999999999999999999999999998887 999999999
Q ss_pred HHhhhhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCc---CCCCchhHHH
Q 000134 1275 VKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGA---SGLGAEVGNC 1351 (2096)
Q Consensus 1275 ~kLH~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~---~~~~~~~~~~ 1351 (2096)
++||++.|++.+++.+...+..+.+ . .--.+|..|++.++++++.+||||++||+.++. .++++++|+|
T Consensus 1601 ~kLH~l~el~~~~~~l~~~s~~~~s------~--~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~ 1672 (2382)
T KOG0890|consen 1601 MKLHLLLELENSIEELKKVSYDEDS------A--NNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGEC 1672 (2382)
T ss_pred HHHHHHHHHHHHHHHhhccCccccc------c--ccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHH
Confidence 9999999999999887643322111 1 112789999999999999999999999999987 3678999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCC
Q 000134 1352 WLQYAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVP 1431 (2096)
Q Consensus 1352 WL~~AklARKag~~~~A~~all~a~~~~~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~ 1431 (2096)
|+++||+|||+||+|+|++||++|..+..|++++|+||++|++|++++|+.+||+.++.+..+..++
T Consensus 1673 wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~------------- 1739 (2382)
T KOG0890|consen 1673 WLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTP------------- 1739 (2382)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCC-------------
Confidence 9999999999999999999999999999999999999999999999999999999997544332211
Q ss_pred CCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhc
Q 000134 1432 LNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEEN 1511 (2096)
Q Consensus 1432 ~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~~~~~~e~~ 1511 (2096)
-++. +....-...+|+.|++++|++++++..+++++++|++|++.+|+||++|||+|+|||+++.+.+..+.+
T Consensus 1740 ~~~~------p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E- 1812 (2382)
T KOG0890|consen 1740 YTDT------PQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKME- 1812 (2382)
T ss_pred cccc------chhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhccccc-
Confidence 1111 111112244689999999999999999999999999999999999999999999999999665432211
Q ss_pred ccCCcchhhhhchHHHHHHHHHHhhccCCcchhhhHHHHHHhhhhcCccccccCCCChhhhHh-HHHHHHHHHHhhcCCC
Q 000134 1512 SEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKN-VNGKVMSIMRGCLKDL 1590 (2096)
Q Consensus 1512 ~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~i 1590 (2096)
..| ....|+. +|.+|++|+.+|++++||+||||+|||||+|......+...++++.. ....|++.+++++..+
T Consensus 1813 -~~g----~~~~~l~-~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~~ek~~r~ei~s~~~~~in~~i~~~~~~l 1886 (2382)
T KOG0890|consen 1813 -KSG----RVLSLLK-AIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHISSVEKAPRGEIVSKNLKLINSLIEEALEHL 1886 (2382)
T ss_pred -ccc----cHHHHHH-HHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhcccccCChhhhhhhhHHHHHHHHHHHHHhC
Confidence 112 2334666 89999999999999999999999999999998655544444444433 3567899999999999
Q ss_pred CCchhhhhhHHhhhccccCchHHHHHHHHHHHHHHHhchhhHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCCCchhc
Q 000134 1591 PAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSRREAAAEIIQAAKKGSAHGNSANN 1670 (2096)
Q Consensus 1591 P~~~wl~~lPQLisRl~h~~~~v~~~l~~il~kv~~~yPqq~lw~l~~~~~S~~~~R~~~~~~Il~~~~~~~~~~~~~~~ 1670 (2096)
|+|+|||+++||+|||||||.+|+.++++||.+|+.+||||++|++++++||+++.|++||++|+++.+...+. ..+
T Consensus 1887 p~Y~f~ta~sQLlSRicH~~~dV~~vl~~II~~l~~~YPqq~lW~~~a~~kS~~p~R~~R~keIL~k~~~~~~~---~~~ 1963 (2382)
T KOG0890|consen 1887 PTYQFYTAYSQLLSRICHPNQDVARVLKHIIAKLVLAYPQQTLWQSAALSKSNVPSRVERCKEILTKSRRQKPD---YKK 1963 (2382)
T ss_pred cchHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCchHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcc---HHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988876543 357
Q ss_pred hHHHHHHHHHHHHHHhhccCCccccccchhHhhHHH-HhhccCCcccccccccccccCCCCCCCCCCCCCCCCCCCCcce
Q 000134 1671 LFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSAL-KRMMPLGIIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPT 1749 (2096)
Q Consensus 1671 li~~~~~l~~~Li~l~~~~~~~~~~~~~l~~~f~~l-~~~~~~~~i~P~~~~l~~~LP~~~~~~~~~~~~~~f~~~~~v~ 1749 (2096)
++.++..++++|+++|++++.++.+..+++.+|+.+ ....+..+++|+++.+.+++|..+.+...-..+.||+ ++.++
T Consensus 1964 l~~da~~lTe~L~~lcn~~v~~ss~~~sl~t~F~kl~~~~~~s~iliP~~~~M~ptlP~~~~~~~~h~~~~~f~-~~~~~ 2042 (2382)
T KOG0890|consen 1964 LLSDAYDLTEKLTNLCNKKVNSSSKVLSLKTDFRKLVMNRRFSDILIPLQSIMDPTLPLIDNNHATHSPFPPFQ-SHLPY 2042 (2382)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccccccHHHHHHHhccccChhhhhhhHhhhcccccccccCcccccCCCCCCC-Ccchh
Confidence 899999999999999999999888889999999833 3345678999999999999999877543323344666 48899
Q ss_pred EeeecCceEEecCCCcceEEEEEecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceeeecC
Q 000134 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTE 1829 (2096)
Q Consensus 1750 I~~f~~~v~V~~S~q~PkrI~i~gsDGk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~ 1829 (2096)
|.||+|+|+|++|+||||||+++||||+.|+|||||+||||||.|+|+|+.+||++|+||.|+|||.|+||||+|+||++
T Consensus 2043 IsgF~d~V~Il~SLqKPKkI~l~GsDGk~Y~~lCKpKDDLRKD~RlMeFn~lin~lL~KD~eSRrR~L~IRTYaViPLne 2122 (2382)
T KOG0890|consen 2043 ISGFSDEVKILNSLQKPKKIKLRGSDGKIYPFLCKPKDDLRKDARLMEFNELINKLLRKDQESRRRKLYIRTYAVIPLNE 2122 (2382)
T ss_pred hhcchHHHHHHHhccCCeEEEEEcCCCCEeEEEeCchhhhhhhhHHHHHHHHHHHHHhhCHHHhhhcceeeEEEEeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHHHHHhhCCChhHH
Q 000134 1830 DCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAW 1909 (2096)
Q Consensus 1830 ~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf~~~f~~p~~w 1909 (2096)
+|||||||||+.++|+|+.++|..+|.+...+ ......+..+ .+...+.+.|+++++++||||||+||.++||+|.+|
T Consensus 2123 eCGiIEWv~nt~slR~IL~klY~~rg~~~~~~-~l~~~~~~~~-~~~~~~~~~F~~~~lpkfPPVFheWFl~~FPeP~sW 2200 (2382)
T KOG0890|consen 2123 ECGIIEWVPNTASLREILDKLYMTRGKWMIKK-QLRSVHLKKQ-MAKEEKGKVFREKLLPKFPPVFHEWFLESFPEPGSW 2200 (2382)
T ss_pred ccceEEecCCcchHHHHHHHHHHhccccchhh-HHHHhcCcHh-hcccchhhhhHHhhcccCCcHHHHHHHHhCCCchHH
Confidence 99999999999999999999998888876532 2211112121 123345678999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCCCCCCCCCCccccHHHHHhhcCCCccc
Q 000134 1910 FRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMIDGLGITGYEG 1989 (2096)
Q Consensus 1910 ~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l~~pE~VPFRLT~nmv~~mG~~G~eG 1989 (2096)
|.+|.+|+||+||||||||||||||||+||||||..||++|||||+|+|+||++|++||.|||||||||+|||||+|+||
T Consensus 2201 ~~SR~~Y~rTtAVMSmVGyIlGLGDRHgENILFDs~TGdcVHVDFnCLFnKGetlevPEiVPFRLT~NMidamGp~G~EG 2280 (2382)
T KOG0890|consen 2201 FASRNNYARTTAVMSMVGYILGLGDRHGENILFDSTTGDCVHVDFNCLFNKGETLEVPELVPFRLTQNMIDAMGPLGLEG 2280 (2382)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccccceeeecCCCcEEEEeecccccCCcccCCCCccceecchhHHhhcCCcccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccccccCC-CCccccchhHHHHHHHHHHHhhccccccCCCCCCCCCH
Q 000134 1990 TFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKS-SGVEVENPHAQRAISNIEARLQGSVVGVGAAPSLPLAV 2068 (2096)
Q Consensus 1990 ~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~~~~~-~~~~~~n~~a~~~l~~i~~kL~g~~~~~~~~~~~~lsv 2068 (2096)
.||++||.||++||+|+++||++|++|+|||+++|.+.++. +..+..++ +.++..|++|++|.+. ..+.|+||
T Consensus 2281 ~Frk~cEiTLrLlR~n~e~LMSiL~tF~~DPlvew~~~~k~~s~~~i~e~--~~~i~~i~~rlqG~~~----~~glPLSv 2354 (2382)
T KOG0890|consen 2281 SFRKVCEITLRLLRKNRETLMSILETFVYDPLVEWNRPSKGRSPKKINED--RLVIGRIRGRLQGAMK----VDGLPLSV 2354 (2382)
T ss_pred hHHHHHHHHHHHHHhcchhHHHHHHHHHhCchhhccCcccCCCcCcccch--HHHHhHHHHHHhccCc----CCCCccch
Confidence 99999999999999999999999999999999999998776 33333332 8899999999999764 35679999
Q ss_pred HHHHHHHHHHHhCcchhhhcCCcccCCC
Q 000134 2069 EGQARRLIAEAVSHKNLGKMYIWWMPWF 2096 (2096)
Q Consensus 2069 ~~qV~~LI~~Atd~~nL~~My~gW~Pwl 2096 (2096)
+|||+.||++|||++|||+||+||+|||
T Consensus 2355 eGq~~~LI~eATseenL~~MYIGW~p~l 2382 (2382)
T KOG0890|consen 2355 EGQASSLIEEATSEENLSEMYIGWMPFL 2382 (2382)
T ss_pred hhHHHHHHHHhcCHHHHHHHHhhhhccC
Confidence 9999999999999999999999999997
No 2
>KOG0892 consensus Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=8.6e-111 Score=1119.37 Aligned_cols=1332 Identities=21% Similarity=0.276 Sum_probs=873.0
Q ss_pred HHHHHHHHHHHH--hHHHHHhhcccCCCCCChhhh---HHHHHHHHHhcCCCCHHHHHHHHHhhcc----C-CChhHHHH
Q 000134 605 KVVKILEDLVLK--NRAILKQHIHEFPLLPSIAAL---TEVNKAIQEARGPMTLKDQLLAAVDGLN----H-ENLNVRYM 674 (2096)
Q Consensus 605 ~~~~il~~Li~~--n~~~L~~~i~~lp~Lp~ip~l---~~v~~~l~~~r~~~~l~~~l~~~~~~l~----~-en~~Vr~~ 674 (2096)
+...+..+...+ ..+.+...+..+-+ |+++.. .++..+++..|+.+...+.+..|+..-. + ++.-++..
T Consensus 1295 ~~l~~~~~~~~d~~kn~~i~~~~~lf~~-~~~~~~~~~~~~~~~~~~tr~~~s~l~~~~~lL~~~~~~~~~~~~~~~~f~ 1373 (2806)
T KOG0892|consen 1295 QRLAIGKLFATDEEKNETISFRICLFLP-FSDTFIFSNYRLMIHLRITRQHLSALTELSLLLGIARFHLKKLKPSFTDFD 1373 (2806)
T ss_pred hhHHHHHHHhhhhhhcchhhhhhhhccC-chhHHHHHHHHHHHHHHhcccchHHHHHHHHHhhhhhccccccCcccchHH
Confidence 344444444444 23344333333322 444443 3444566778898888888877763322 2 12224888
Q ss_pred HHHHHHHHHhhcHHHHHHHHhccCC-CCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhcccCccCcccccccccc
Q 000134 675 VVCELSKLLKLKSEDVTALINGEAC-SDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALGAVDPAKVKGFSCQ 753 (2096)
Q Consensus 675 aL~eL~~~L~~~~~~l~~~~~~e~~-~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IGalDp~r~~~~~~~ 753 (2096)
.|-+|.++.....+..+..+..+.. .+.......+-.||.-...........+++.+++.|+|..|.+|-+.+......
T Consensus 1374 ~l~~l~~~c~~~~~~~~~~~~a~~~~~~~~~~~~~~vNLl~~~~~~~~~~~~k~i~e~~~s~~~~~~~v~vs~~~~~~~~ 1453 (2806)
T KOG0892|consen 1374 KLFSLARQCCDFKGFCYDTIKAMEDIQDFGTWKKGYVNLLLNFEYEGDGFLREQIRELRSSMTGKNDWVDVSNKLRERSA 1453 (2806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHhhhcccchHHhHHhhhhccccCCcchhhhhhHHHHHhc
Confidence 9999999999998888887763322 222345555556665554433334557999999999999999998887764422
Q ss_pred ccccccc-----ChhhHHHHHHHHHHHHHHcCCChhhHhHHHHHHHHHHHHcCCCcccccCcchhhhhhhccccchhhhc
Q 000134 754 RFKIECS-----DDDLIFELIDKHLARAFRAAPDTIIQDSAALAIQELLKIAGCEASLDENVPASILQVLKDKEHLTVVA 828 (2096)
Q Consensus 754 ~~~~~~~-----~~~f~~~ll~~~Lv~af~s~~dt~~Q~~~A~AiQElLk~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 828 (2096)
.+.-... .......++...+..+|+--.=++.+ +=+.|-+.+..
T Consensus 1454 ~~~~~~~lkl~~~~~L~~~~~~~~~~~n~l~~~c~k~~---~~~~~~~~n~~---------------------------- 1502 (2806)
T KOG0892|consen 1454 RISMNNLLKLYFWTVLDAHFRKVLHSLNLLFWKCYKAR---SRELQDLHNKL---------------------------- 1502 (2806)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHH---HHHHHHHHHHH----------------------------
Confidence 2111000 00001111122222222222222222 01222222221
Q ss_pred ccCCCCCchhhhchhhhHHHHhhchhHHHH---hccccccccccCCCCCCCCCCCccc---------CC----CChHHHH
Q 000134 829 SGTMGSDNIHEMNMRGRKFWDRFSIYVKEI---IAPCLTSRFQLPSGSDSVSTGPIYL---------PS----MSFRRWI 892 (2096)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~W~~~p~~~r~~---l~P~ltS~Y~~~~~~~~~~~~Pi~~---------~~----~sy~~Wl 892 (2096)
.....+...|...|+.+-.+ ..|..+++-+....+......|++. -. .+++.|+
T Consensus 1503 ----------~s~~t~~~~~q~~~e~v~~~~~~~q~~~~~~~~~~~e~~~~~~~~v~~~~~~~L~~~~~~~~~~s~g~~i 1572 (2806)
T KOG0892|consen 1503 ----------FSTDTMGWFWQKSPEIVDLVHYYPQTDPRLCDTSNYEPSKDFLWKVICQDDCSLLFKLPILLDSSIGIQI 1572 (2806)
T ss_pred ----------HhhhhhhhHHhcCccceechhhcccCChhhhhhcccCchhhhhhchhccccceEEEEcCcccccchhhhh
Confidence 00124566899999987654 3333333322211111111122111 12 4566777
Q ss_pred HHHHH-HHHhhhcCCchhHHHHhhhhhhccHhHHHHhhHHHHHHHHhcCCHHH-HHHHHHHHHHHhccccCCCCCCc-cc
Q 000134 893 YYWIR-KLTVHATGSRASIFNACRGIVRHDMQTAIYLLPYLVLNAVCHGTEEA-RLGIAQEILSVLDAAASDHSGAS-VH 969 (2096)
Q Consensus 893 ~~w~~-~L~~~~~~~~~~iF~~c~~iir~D~~ia~fLLPylvl~il~~g~~e~-~~~I~~Ei~~VL~~~~~~~~~~~-~~ 969 (2096)
..+.. +++. .+....+|..-+++.-.+...+.-..|+....++.....|. ++-...+.+.+++-..-..+... .+
T Consensus 1573 ~~~~~~~n~~--~~~K~~i~~~dk~~~~~~~~~~~~~~~~~~~~il~~t~~es~s~w~s~~~ls~f~~c~~~~~~~~~st 1650 (2806)
T KOG0892|consen 1573 RMFFEGSNIM--ELTKNLIFPLDKITLDSFLKTLVSEEGSFIIDILQQTNNESLSNWLSEFALKLFNMCGRSSTTHSLST 1650 (2806)
T ss_pred hhccccchhh--hhhhhhccchhHHHHHHHHHHHhhccchhHHHHHhhhhccchhhHHHHHHHHHHHHHhccCCchhhcc
Confidence 65332 1111 12334566666666677778888888999988887543333 56666677777765432111000 00
Q ss_pred CCC-chhhhHHHHHHHHHHhhhH--------HHHHHHHHhhhhhcchhcccCCCCCCCCCcchhhHHHHHhhhHhhhccC
Q 000134 970 GIS-GQSEVCIQAIFTLLDNLGQ--------WVDDVKQELALSESLTSKQQGSKSKHPASSMHQDQLLTQCQYVSGLLSA 1040 (2096)
Q Consensus 970 ~~~-~~~~~~~q~vF~vlD~l~~--------W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~fL~~ 1040 (2096)
... ..... .|.|-..++...+ |+....+.+. ++-++.+ .+. |...
T Consensus 1651 ~~~~~~t~i-~~~i~~~l~~~s~~~~~~~~~~~~yi~~~~~------------~sl~~n~---~~~----------~~m~ 1704 (2806)
T KOG0892|consen 1651 YMANFSTSI-CQLIICLLLLESDFNPGNNLKQKDYIFELIL------------SSLLKNS---NSI----------FKMD 1704 (2806)
T ss_pred ccccccHHH-HHHHHHHHHhhccccHHHHHHHHHHHHHHHh------------hccccch---hHH----------HHHH
Confidence 000 11122 3555555554443 3333222211 1111111 011 1112
Q ss_pred CCHHHHHHHHHhchhHHHHHHHHHHHHhhhcCC------------------CCCccccCCCCChhhHHHHHHH----Hhc
Q 000134 1041 IPKVTLARASFRCQAYARSLMYFESHVREKSGS------------------FNPAAEKSGTFEDEDVSFLMEI----YSF 1098 (2096)
Q Consensus 1041 Ip~~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~------------------~~~~~~~~~~~~~~~~~~L~~I----Ya~ 1098 (2096)
+....+++++++|+++.-+..|.|......... ..|. ....+.....||++ |..
T Consensus 1705 ~ni~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~e~s~~~~t~~~~k----~k~~e~~~~~lqDil~~~y~~ 1780 (2806)
T KOG0892|consen 1705 MNILKYLRRQLGCHAFNPFEIYYWLPIVYSVAASTAYDCLLFEYSLLSLTIHSPK----NKRDELDITLLQDILKKAYES 1780 (2806)
T ss_pred HHHHHHHHHhhchhhhcchhhhccccHHHHHHHHHHHHHHHHHHHHHHHhhcCcc----cchhHHHHHHHHHHHHHHHhh
Confidence 333344555555555555555544332211100 0000 11124567788888 999
Q ss_pred CCChHHHHHHHHHhccCChhHHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccC
Q 000134 1099 LDEPDGLSGLARLHKSLSLQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRI 1178 (2096)
Q Consensus 1099 LdEpDgl~Gi~~~~~~~sl~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~ 1178 (2096)
|++||+++|+-.-.. ... -+++.+|+.++|..|+..|+.+ .+.|.+ ..+.|.++.|++.|....+..|.+|+....
T Consensus 1781 I~~pD~lyG~~~~~~-~~~-~~l~~~~he~~w~~aL~~~d~~-~~~~ss-~~~~~~~~sLq~~g~~~I~~~y~~Gl~~~~ 1856 (2806)
T KOG0892|consen 1781 INCPDALYGIKRPTS-LKN-LILITAEHEKNWPRALSYYDLA-DMYPSS-EDEAGFINSLQNAGFFHILEFYIDGLKSND 1856 (2806)
T ss_pred CCCcchhcccCCccc-ccc-cccchhhhhhhHHHHHHhhcch-hhccch-HhHhHHHHHHHHhcchhHHHHHhcChhhhh
Confidence 999999999965211 111 4678899999999999999853 355655 456899999999999999999999998765
Q ss_pred hhhhhhHhHHHHHHHHhcCChhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhh
Q 000134 1179 PQYKKTWCMQGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAP 1258 (2096)
Q Consensus 1179 p~~~~~~~~~~vEAAWrlg~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~ 1258 (2096)
-.+..+.-...+|||||+|+||..-..... .. ......++..+.-++.|+++++.+.+...++.+|+..+..
T Consensus 1857 ~~~~~~~~e~~Ye~awr~g~Wd~~t~~~~~-~~-------~~~~~~y~e~~f~~l~al~ere~e~~yl~le~a~~~~v~~ 1928 (2806)
T KOG0892|consen 1857 KIDEPSNEELVYEAAWRLGKWDILTLSLVD-QN-------KTKGDYYHESLFEALRALHEREIEGSYLHLEDARNKKVLL 1928 (2806)
T ss_pred hhhhhhhhhhhHHHHHhcCCcccCCcchhh-hh-------hhhchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 545444445568999999999987544311 00 1134567788899999999999999999999999999999
Q ss_pred hhccchhhHHhhhHHHHHhhhhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhh
Q 000134 1259 LAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMV 1338 (2096)
Q Consensus 1259 Lsa~~~eSy~r~y~~l~kLH~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~v 1338 (2096)
+...+.++..--|+.+.+|+.+++++.+..+... ..+.+....+...|..-++...+.+...+.+..-++++
T Consensus 1929 i~~~see~~~~~y~~l~~L~~l~~l~~i~~l~~~--------~~~~~~~~~~~~k~~t~~q~~~~~~~~~~~~~~d~n~l 2000 (2806)
T KOG0892|consen 1929 INPNSEESSLSFYATLYDLQFLVTLEPIRCLQST--------ADKHQSNTDILQKWKTNLQLSSQLMECLSLLIEDRNVL 2000 (2806)
T ss_pred hcccchHHHHHHHHHHHHHHHHhhhhhhHhhhhh--------hcchhhhhHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988765420 12233445677788888887777777666666666665
Q ss_pred cCcCCCC--------chhHHHH----HHHHHHHHHcCChHHHHH---HHHHHhhcCCChHHHHHHHHHHHcCCchHHHHH
Q 000134 1339 FGASGLG--------AEVGNCW----LQYAKLCRLAGHYETATR---AILEAQASGAPNVHMEKAKLLWSTRRSDGAIAE 1403 (2096)
Q Consensus 1339 l~~~~~~--------~~~~~~W----L~~AklARKag~~~~A~~---all~a~~~~~~~~~iE~AKLLW~~g~~~~Ai~~ 1403 (2096)
+....+. +...... +.-.++||+-...+.-.+ ++-.+.....-....+.|...|+.+....+-+.
T Consensus 2001 ~s~~~l~~~l~~~~~~~~~~~l~~~g~e~~~la~~~~~~~~~~~~~r~~~~i~~~~~~~~~~s~aq~~~k~~~~~~~e~i 2080 (2806)
T KOG0892|consen 2001 LSLLQLHKQLSESQLADLASLLKYYGLELCKLAESFLIADLLQNIARAFPVIMLSIKLLCKFSLAQENLKHDIDKLSEAI 2080 (2806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhchhhHHhHHHhhHHHHHHHHHHhhhhhhhhhccchhhhhHHHH
Confidence 5432111 1111111 223344444333332222 222222111122333444444444443333333
Q ss_pred HHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHh
Q 000134 1404 LQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSR-VREL 1482 (2096)
Q Consensus 1404 L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~-a~~l 1482 (2096)
|-....++... .. .. ++.+.++. .....-..+..+|+|+.++....+..|++.|.+ +...
T Consensus 2081 L~~~~~kne~~--~~-----~s--~~~~~~~~----------lk~~~~~~~a~~g~Wlaetk~ens~~i~e~yl~~a~~~ 2141 (2806)
T KOG0892|consen 2081 LWQRDEKNEAI--IS-----LS--ESLAKNNS----------LKEFPSDIYAVLGKWLAETKSENSALISEKYLEKAVSL 2141 (2806)
T ss_pred HHHHHhhhhHH--HH-----HH--hhhhhcch----------hhhhHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 33333221110 00 00 00011110 011223467788999999988888888888853 3322
Q ss_pred cc--ch----------HHHHHHHHhhhHHHHHHHHhhhh-hcc------------cCCc---------------------
Q 000134 1483 QP--MW----------EKGYFYMAKYCDDVLVDARKRQE-ENS------------EIGP--------------------- 1516 (2096)
Q Consensus 1483 ~~--~w----------eK~~~~la~y~d~l~~~~~~~~e-~~~------------~~g~--------------------- 1516 (2096)
.. .| .++|+++|+|-|..+.+.+.+.. ... ..+.
T Consensus 2142 ae~~d~e~~~~~~~~~s~a~~~~akysd~~~~~~~~~~~sse~et~~~l~k~~~~~~~~~~er~~q~~~~~~~~~~rq~~ 2221 (2806)
T KOG0892|consen 2142 AEHYDNESCKALIYCQSFAQFCLAKYSDPDYQEDEERRSSSEFETLKDLQKLERSTVEASNEREEQMRKNHHVRVQRQLI 2221 (2806)
T ss_pred hhhcchhHHHHHHhHHHHHHHHHHhccCchhhhHHHHHhHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 21 22 36899999998888742211000 000 0000
Q ss_pred -chhh-------hhchHHHHHHHHHHhhccCCcchhhhHHHHHHhhhhcCccccccCCCChhhhHhHHHHHHHHHHhhcC
Q 000134 1517 -SEKR-------WWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLK 1588 (2096)
Q Consensus 1517 -~~~~-------~~~~l~~ai~~Y~~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 1588 (2096)
++.+ -..++..|+++|++++..|++|....+.|.+++||+++. ..+++..|.+.+.
T Consensus 2222 lDe~~l~~l~~~r~~fL~~Alt~Yl~cl~~~~~~D~~~i~R~cslWfsns~----------------~~evn~~mk~~i~ 2285 (2806)
T KOG0892|consen 2222 LDEEELLALSEDRSKFLTLALTNYLNCLSESDEYDVDLIFRCCSLWFSNSH----------------LKEVNNSLKHEIQ 2285 (2806)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhHHHHHhhcccccHHHHHHHhhhhccccc----------------hHHHHHHHHHHhc
Confidence 0100 125788999999999999999999899999999999765 2467888899999
Q ss_pred CCCCchhhhhhHHhhhccc-cCchHHHHHHHHHHHHHHHhchhhHHHHHHHhhcCCC-------------hhHHHHHHHH
Q 000134 1589 DLPAYQWLTVLPQLVSRIC-HQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTI-------------PSRREAAAEI 1654 (2096)
Q Consensus 1589 ~iP~~~wl~~lPQLisRl~-h~~~~v~~~l~~il~kv~~~yPqq~lw~l~~~~~S~~-------------~~R~~~~~~I 1654 (2096)
.+|.|+|++++.||.|||. ..+.++...+..++.+++.+||++++|.++++..... ..|...+.-+
T Consensus 2286 ~ipsyKFip~~yQlAaRl~~~~~~~fq~~L~~Li~r~~~dhPyhtly~L~~L~~~~rd~e~~n~sr~sl~~~rki~a~l~ 2365 (2806)
T KOG0892|consen 2286 TVPSYKFIPLVYQLAARLGNSENNSFQKSLTSLIYRVGRDHPYHTLYQLLSLVNAVRDNEDENRSRGSIDRDRKIAAELD 2365 (2806)
T ss_pred cCCcchhHHHHHHHHHHhccccCchHHHHHHHHHHHHhccCchHHHHHHHHHHhcCcChhhhhhcccccchhHHHHHHHh
Confidence 9999999999999999999 6888999999999999999999999999998764322 2223333333
Q ss_pred HHHHHhcCCCCCchhchHHHHHHHHHHHHHHhhccCCccccc----cchhHhhHHHHhhccCCcccccccccccccCCCC
Q 000134 1655 IQAAKKGSAHGNSANNLFGQFTSLIDHLIKLCFHAGQSKSRT----INISTEFSALKRMMPLGIIMPIQQSLTVTLPPQD 1730 (2096)
Q Consensus 1655 l~~~~~~~~~~~~~~~li~~~~~l~~~Li~l~~~~~~~~~~~----~~l~~~f~~l~~~~~~~~i~P~~~~l~~~LP~~~ 1730 (2096)
+...... ..+.+.++..+++.+|.+||.+ .....+ +++...+..++.....++ ..|+..
T Consensus 2366 ~~~v~~~------~~~~v~~v~~lc~~yI~lAnl~-~~q~~t~~k~v~~p~~~~~~K~~nl~~v----------~~pT~e 2428 (2806)
T KOG0892|consen 2366 LCDVNQG------AGNMVRQLECLCEAYISLANLK-TSQNDTTSKLVRLPGYQWFLKQLNLEGV----------PPPTMN 2428 (2806)
T ss_pred hhHhhcc------chhHHHHHHHHHHHHHHHhcCc-ccccchhhhhhcCccccHHHhhhhccCC----------CCCCCC
Confidence 4333322 2378999999999999999943 222222 333333333332211111 222222
Q ss_pred CCCCCCCCCCCCCCCCcceEeeecCceEEecCCCcceEEEEEecCCCeeeEEec-CCCcchhhHHHHHHHHHHHHHhccC
Q 000134 1731 ANLTESPSSDIFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCK-PKDDLRKDSRMMEFTAMINRLLSKY 1809 (2096)
Q Consensus 1731 ~~~~~~~~~~~f~~~~~v~I~~f~~~v~V~~S~q~PkrI~i~gsDGk~y~fL~K-~~dDlR~D~R~mQl~~liN~lL~~~ 1809 (2096)
..+...+ ..++.|+|.+|.+++.+.++.+.||.|++.||||++|..||| ++||||||+.|.|+|+++|++|.++
T Consensus 2429 v~v~~s~-----~~~~~p~i~s~~~~v~~~~GinaPkiI~c~gSDG~~~kqLVK~gnDDLRQDAVMeQvF~~vN~lL~~~ 2503 (2806)
T KOG0892|consen 2429 VKVNDSG-----DYGNIPTVVSFDDTVTFAGGINAPKVITCVGSDGKTYKQLVKGGNDDLRQDAVMEQVFGQVNTFLQND 2503 (2806)
T ss_pred ccccCCc-----ccCCCceEEecccceeeecCccCCeEEEEEccCchhHHHHHhcccchHHHHHHHHHHHHHHHHHhhcc
Confidence 2221111 236889999999999999999999999999999999999999 7999999999999999999999999
Q ss_pred CcccCCCeeeeecceeeecCCcceeEecCCCccHHHHHHHHHHhcCCCcc----ccCChHHHHHHHHHhcCCChHH--HH
Q 000134 1810 PESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDR----QKTNPQIKRIYDQFQGKIPEDE--ML 1883 (2096)
Q Consensus 1810 ~etrrR~L~i~tY~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~ 1883 (2096)
+++++|+|.||||+||||++..|+||||.|++|+.+++...- .|.+.+ +...+..++.+...+.+. .++ ..
T Consensus 2504 ~et~krkL~irTYKVvPls~~sGvlEwv~~tiplgeyLv~~~--~gah~ry~p~d~s~~~crk~m~~~q~k~-~E~r~k~ 2580 (2806)
T KOG0892|consen 2504 RETRKRKLSIRTYKVIPLSPKAGVLEWVTNTIPLGEYLVVES--GGAHKRYRPNDWSLSKCRKLMSEVQKKS-LETRLKA 2580 (2806)
T ss_pred HHHHhcccceeEEeeeecCcccceeecccCCeehhhhhcccC--CccccccCCCCCChHHHHHHHHHHhccc-HHHHHHH
Confidence 999999999999999999999999999999999999986311 233222 122345555555444332 222 24
Q ss_pred HHhhcCCCchHHHHHHHhhCCChhHHHHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCC
Q 000134 1884 KTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLL 1963 (2096)
Q Consensus 1884 ~~~i~~~~~pvl~~wf~~~f~~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~ 1963 (2096)
..++|+.|.||||.||++.||+|..||++|++||||.|+.|||||||||||||..|||||..||+|||||||.+|++|+.
T Consensus 2581 y~~vc~n~~PvfryFflEkF~dP~~WFekrlaYTrsvA~sS~VGyILGLGDRH~qNILid~~taEviHIDlGiAFEQGki 2660 (2806)
T KOG0892|consen 2581 YDKVCRNIRPVFRYFFLEKFPDPADWFEKRLAYTRSVAASSMVGYILGLGDRHGQNILIDQQTAEVIHIDLGIAFEQGKI 2660 (2806)
T ss_pred HHHHHhhchHHHHHHHHHhcCCHHHHHHHHHHHHHhHHHHHHHHHHhcccchhhhheeecccccceEEEeeeeehhcCCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccHHHHHhhcCCCccchHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccccccCC-------CCccc-
Q 000134 1964 LEKPELVPFRLTQNMIDGLGITGYEGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKS-------SGVEV- 2035 (2096)
Q Consensus 1964 l~~pE~VPFRLT~nmv~~mG~~G~eG~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~~~~~-------~~~~~- 2035 (2096)
+|.||.|||||||++||+||++||||+||+|||.||.+||++++.+++|||+++||||.+|..++.+ .+-+.
T Consensus 2661 lptPE~VPFRLTRDiVdgmGItGveGvFrRccE~t~~vlR~~~~~lltileVl~yDPLf~W~msplK~~~~q~~e~~e~~ 2740 (2806)
T KOG0892|consen 2661 LPTPETVPFRLTRDIVDGMGITGVEGVFRRCCEFTLEVLRREKESLLTILEVLLYDPLFSWLMSPLKALKKQKEEDEENF 2740 (2806)
T ss_pred CCCCCcccceeehhhccccCccCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcchHHHhhcHHHHHHHHHhhcchhc
Confidence 9999999999999999999999999999999999999999999999999999999999999876421 11111
Q ss_pred -----------cchhHHHHHHHHHHHhhccccccCCCCCCCCCHHHHHHHHHHHHhCcchhhhcCCcccCCC
Q 000134 2036 -----------ENPHAQRAISNIEARLQGSVVGVGAAPSLPLAVEGQARRLIAEAVSHKNLGKMYIWWMPWF 2096 (2096)
Q Consensus 2036 -----------~n~~a~~~l~~i~~kL~g~~~~~~~~~~~~lsv~~qV~~LI~~Atd~~nL~~My~gW~Pwl 2096 (2096)
.+..+.+++-++++||.|+..|. .+||++||+.||++||||.|||.|||||.||+
T Consensus 2741 n~~~~~~~~~~nd~~a~r~l~r~q~kl~g~e~g~------~~sVe~qv~~LIqqA~dpsnLs~~fpGW~a~~ 2806 (2806)
T KOG0892|consen 2741 NLSGNITEDASNDRNAVRALMRAQRKLDGVEQGT------MLSVEAQVQELIQQATDPSNLSLMFPGWSAFQ 2806 (2806)
T ss_pred ccccchhhhhccchHHHHHHHHHHHHhhhhhccc------cccHHHHHHHHHHHhcCchhhhhhcCCCcCcC
Confidence 13567889999999999987653 67899999999999999999999999999995
No 3
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=100.00 E-value=8e-86 Score=908.81 Aligned_cols=975 Identities=27% Similarity=0.438 Sum_probs=753.9
Q ss_pred ccCCCHHHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH-hccCC
Q 000134 1038 LSAIPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL-HKSLS 1116 (2096)
Q Consensus 1038 L~~Ip~~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~-~~~~s 1116 (2096)
-..|+..+|...+..|++|+.||+|.|..+.... ..+.++.|.-+-..++-+|.+.|+... ++...
T Consensus 1220 plpi~~~~L~~~~~~c~a~~~~l~y~el~~~~~~-------------~~~~i~sl~~~~~~~q~~~~a~~i~~~a~~~~~ 1286 (2341)
T KOG0891|consen 1220 PLPIPIKTLGLYAEKCRAYAKALHYKELEFLKEP-------------SPDTIESLISINNKLQQREAAIGVLKYAQQHSE 1286 (2341)
T ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcc-------------chhHHHHHHhhcccchhHHHhccHHHHHHhHHH
Confidence 3467778999999999999999999999887541 236789999999999999999999763 44557
Q ss_pred hhHHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhh-ccChhhhhhHhHHHHHHHHh
Q 000134 1117 LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLI-SRIPQYKKTWCMQGVQAAWR 1195 (2096)
Q Consensus 1117 l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~-~~~p~~~~~~~~~~vEAAWr 1195 (2096)
++.+..++|+..+|++|+.+|+........+.+...|.++|+..+|+|+-+.......+ ....+......+.++.++|-
T Consensus 1287 l~~~e~w~e~l~~~~d~l~a~~~~~~~~~~~~e~~~g~~~~~~~lg~w~~l~~~~~~~~~~~~~~~~~~~ap~a~~~~~~ 1366 (2341)
T KOG0891|consen 1287 LQLKETWYEKLHRWEDALAAYELREKAGDSSFELRMGKMRCLEALGDWDELSQLASEKWEVAGQEAKHKMAPLAAAAAWG 1366 (2341)
T ss_pred HHHhhhcccccccchhHhhhhhcccchhhhhHHHHhhhhhhhhhhhhHHHHhhhhcccCCCcchhHHHHHHHHHHHhhhc
Confidence 88889999999999999999997766666677888999999999999998874332211 12222345577889999999
Q ss_pred cCChhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHHH
Q 000134 1196 LGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIV 1275 (2096)
Q Consensus 1196 lg~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~ 1275 (2096)
+++|+.+.+|+...+. .+++..++++..++.+.+.......++..|..+..++++...|||.|+|-.++
T Consensus 1367 ~~~w~~~~~~~s~~~~-----------~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~dll~~e~~~~~~Es~sr~y~~~~ 1435 (2341)
T KOG0891|consen 1367 LGQWDTMAEYVSVMSE-----------DSQDKAFFRAILALHRDEFEKAVKLIERARDLLDTELTAMAGESYNRAYGVMV 1435 (2341)
T ss_pred cccchhhhhhcccccc-----------cchhhHHHHHHHhhhhhHHHHHHHhcccHHHHHHHHHHHHHhhHHhhchhhhh
Confidence 9999999998876653 36777788999999888888778888899999999998888899999999999
Q ss_pred HhhhhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHH
Q 000134 1276 KLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQY 1355 (2096)
Q Consensus 1276 kLH~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~ 1355 (2096)
.-+++.|+|+++.+.... .....+.+.|..|+..++....+|+.+|.+|..++++. +.+..|+++
T Consensus 1436 ~~~~~~e~E~~~~~k~~~-----------~r~~~i~~~~~~~l~~~q~~~~~wq~~lr~~~~v~~p~----~~~~~~ik~ 1500 (2341)
T KOG0891|consen 1436 RAQMLAELEEIIEYKKLP-----------ERRPIIAKTWWKRLQGCQKNVDDWQRILRVRSLVLSPQ----EDMEMWIKF 1500 (2341)
T ss_pred hhhhhhhHHHHHHhhccc-----------chhHHHHHHHHhhHHHhhccHHHHHHHHHHhhhccCCC----cchHHHHHH
Confidence 999999999999987521 34456788999999999999999999999999999986 447789999
Q ss_pred HHHHHHcCChHHHHHHHHHHhhc------------CCChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000134 1356 AKLCRLAGHYETATRAILEAQAS------------GAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2096)
Q Consensus 1356 AklARKag~~~~A~~all~a~~~------------~~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~ 1423 (2096)
|-+|||+|+...+...+.....- ..|.......|++|..+....|++.++.....+..+. ....
T Consensus 1501 a~~cr~s~~~~l~~~~l~~~L~~~~~~~~~~~~~~~~P~~v~a~~~~~~~~~~~~~~~~~~~~~~s~l~~d~----~~~~ 1576 (2341)
T KOG0891|consen 1501 ASLCRKSGRLALARKLLNELLERDPSSDLPLPLKARLPQVVYAYLKYLWATDSKDEAINTLQEFTSTLNSDL----GSDP 1576 (2341)
T ss_pred HHHhHHhHHHHHHHHHHHHHHhcCccccccccccccChHHHHHHHhHHHhhccchHHHHHhHHHHHHHHhhc----CCCc
Confidence 99999999999998877654311 1467889999999999999999999987765332110 0000
Q ss_pred ccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhccchHHHHHHHHhhhHH
Q 000134 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQ----KQKEDVITLYSRVRELQPMWEKGYFYMAKYCDD 1499 (2096)
Q Consensus 1424 ~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~----~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~ 1499 (2096)
.... ..+ ..........+.|++++..|.|-...-. .....+...|..|+..++.|+|+|+.||.-++.
T Consensus 1577 -~~~~---~~~----~~~~~~~~~~l~a~~~l~~~~w~~~~~~s~~~~~~~~~L~~y~~at~~d~~~ykawh~~a~a~f~ 1648 (2341)
T KOG0891|consen 1577 -DELL---SEP----TEAEKQEYTKLLARCFLKLGEWQQLLQDSWRTSALDGILQSYLLATQFDRGWYKAWHQWALANFE 1648 (2341)
T ss_pred -hhhh---hcc----cchhhhHHHHHHHHHHHhhccccccccCCccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 0000 000 0011223456789999999999864322 224677889999999999999999888775544
Q ss_pred HHHH--HHhhh-h---hc---c--cCC--cchhhhhchHHHHHHHHHHhhccCCcchhhhHHHHHHhhhhcCccccccCC
Q 000134 1500 VLVD--ARKRQ-E---EN---S--EIG--PSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGS 1566 (2096)
Q Consensus 1500 l~~~--~~~~~-e---~~---~--~~g--~~~~~~~~~l~~ai~~Y~~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~ 1566 (2096)
.... ...+. . .+ . ..| .+.....+|+..++.+|++++....+.-.|.+.|+++|||++|...
T Consensus 1649 ~V~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~avk~ff~~~~~~~~s~lqdtlrl~~L~f~~g~~~----- 1723 (2341)
T KOG0891|consen 1649 VVQMLKQVTKAKYAPGANIWNMPDYLGSNSDLMLIHHYAVPAVKGFFRSISLSPGSSLQDTLRLLTLWFDFGDNK----- 1723 (2341)
T ss_pred HHHhhhhhhccccCCccccccchhhccCcCCccchHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCCCc-----
Confidence 3211 00000 0 00 0 000 0111124588899999999999877777899999999999999631
Q ss_pred CChhhhHhHHHHHHHHHHhhcCCCCCchhhhhhHHhhhccccCchHHHHHHHHHHHHHHHhchhhHHHHHHHhhcCCChh
Q 000134 1567 SSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPS 1646 (2096)
Q Consensus 1567 ~~~~~~~~~~~~v~~~~~~~~~~iP~~~wl~~lPQLisRl~h~~~~v~~~l~~il~kv~~~yPqq~lw~l~~~~~S~~~~ 1646 (2096)
.+...+...+..+|.+.|+.++|||++||.-+...+.+++..++..+++.+||+..|++.++.+|....
T Consensus 1724 -----------~v~q~i~~~~~~~~i~~wl~~ipqLiari~~~~~~~~~l~~~ll~dig~~~pqA~iy~ltvas~s~~~~ 1792 (2341)
T KOG0891|consen 1724 -----------DVYQALLEGINLIPIDTWLEVIPQLIARIHTPDQLVVQLVLQLLSDIGRAHPQALVYPLTVASKSKSVA 1792 (2341)
T ss_pred -----------hHHHHHHhhhhHhhHHHHHHhHHHHHHHHhccchHHHHHHHHHHHHhhhcchhhhhHHHHHHHhcchHH
Confidence 145556677888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhchHHHHHHHHHHHHHHh------hccCCcccccc-----------------------
Q 000134 1647 RREAAAEIIQAAKKGSAHGNSANNLFGQFTSLIDHLIKLC------FHAGQSKSRTI----------------------- 1697 (2096)
Q Consensus 1647 R~~~~~~Il~~~~~~~~~~~~~~~li~~~~~l~~~Li~l~------~~~~~~~~~~~----------------------- 1697 (2096)
|+..+..|+++++.+++ .++++..-.++++++++ ++++.+.+...
T Consensus 1793 r~~~a~~ile~m~~~~~------~Lv~~a~lvs~elir~a~lwhe~w~e~ldeAsr~yf~~~nv~~m~~~l~p~~~~l~~ 1866 (2341)
T KOG0891|consen 1793 RQKAALSILEKMREHSP------TLVRQARLVSEELIRVAILWHEQWHEGLEEASRLYFSDHNVEGMFAVLRPLHEMLER 1866 (2341)
T ss_pred HHHhHHHHHHHHHHhhH------hhhhhhhhhHHHHHHHHhhhHhhhhhccHHHHHHHhhHhhHHHHHHHHhHHHHHhhc
Confidence 99999999999998876 56677777777777765 33333221111
Q ss_pred --------chhHhhH--------HHHhhccCCccccccc--------------------cc-----cc-ccCCCCCCCCC
Q 000134 1698 --------NISTEFS--------ALKRMMPLGIIMPIQQ--------------------SL-----TV-TLPPQDANLTE 1735 (2096)
Q Consensus 1698 --------~l~~~f~--------~l~~~~~~~~i~P~~~--------------------~l-----~~-~LP~~~~~~~~ 1735 (2096)
++...|+ ..++....+.+.-+.+ .+ +. -++..+.....
T Consensus 1867 ~~~t~~e~sFqqt~g~dl~ea~~~~~~~~~~~~~~dL~qawdly~~vf~ki~~ql~~l~sl~l~~vSp~L~~~~dlel~v 1946 (2341)
T KOG0891|consen 1867 GPQTLKEHSFQQTYGRDLKEAYEWVQKFEQSGDVKDLNQAWDIYYNVFKKIRKQLPQLTSLDLQYVSPKLLSAKDLELAV 1946 (2341)
T ss_pred CCcchhhhhhHHhhChhhHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcccccccccceecc
Confidence 1111000 0000000000000000 00 00 01111222223
Q ss_pred CCCCCCCCCCCcceEeeecCceEEecCCCcceEEEEEecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCC
Q 000134 1736 SPSSDIFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRR 1815 (2096)
Q Consensus 1736 ~~~~~~f~~~~~v~I~~f~~~v~V~~S~q~PkrI~i~gsDGk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR 1815 (2096)
++.|.|- ...+.|.+|.+++.|+.|+||||++.|+||||+.|.|++|+++|+|||+|+||+|+++|.++..++++.||
T Consensus 1947 Pgty~~~--~~~i~i~~f~~~~~vitskqRprkl~i~gs~g~d~~~~lkghed~rQD~RvmQLf~Lvn~ll~~d~~~~rr 2024 (2341)
T KOG0891|consen 1947 PGTYDPG--KPIIRIQSFEPKFNVITSKQRPRKLVIRGSDGKDYQYLLKGHEDLRQDERVMQLFGLVNTLLANDSETFRR 2024 (2341)
T ss_pred CCccCCC--ceEEehhhccHHHHHHHHHhhhHHHhhcccchhhHHHHhhchhhhhhHHHHHHHHHHHHHHhccChHHHHH
Confidence 3333322 46789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeeecceeeecCCcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhc------CCChHHHHHHhhcC
Q 000134 1816 KLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQG------KIPEDEMLKTKILP 1889 (2096)
Q Consensus 1816 ~L~i~tY~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~i~~ 1889 (2096)
+|.|..|.|+|++++.|+|+||||+.|++.++.++.... +.. .+...+.+ .+... -+.+.+.|...+..
T Consensus 2025 ~L~iq~Y~~i~ls~~sgL~gWv~~~dtlh~L~r~~r~~k-~i~---l~~eh~~~-~~~~l~~~~ltl~qk~~vfe~~~~~ 2099 (2341)
T KOG0891|consen 2025 NLTIQRYSVIPLSPDSGLIGWVPNCDTLHTLIREYREKK-KIP---LNIEHRVM-LQMAPDYDHLTLMQKVEVFEYALSN 2099 (2341)
T ss_pred HHHHHHhhhcCCCCCCceeeeecccccHHHHHHHHHHhh-ccC---CcchHHHH-HhcCccccchhhhhHHhHhHHHhhc
Confidence 999999999999999999999999999999998876544 211 12111111 11100 12344556666666
Q ss_pred CCchHHHHHHHhhCCChhHHHHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCCCC-CCC
Q 000134 1890 MFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLE-KPE 1968 (2096)
Q Consensus 1890 ~~~pvl~~wf~~~f~~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l~-~pE 1968 (2096)
.-...+++-++-..+.++.|+..|.+||+|.|+|||+|||+|+|||||+|.|+++.||+++|||||.||+....++ +||
T Consensus 2100 t~G~dl~~~lwlkS~ssEaw~~rrt~yt~S~A~msmvgyilGlGdrhpsNlmldr~tgkvihidfgdcfevA~~rek~pe 2179 (2341)
T KOG0891|consen 2100 TQGDDLYKVLWLKSPSSEAWLDRRTNYTRSLAVMSMVGYILGLGDRHPSNLMLDRLTGKVIHIDFGDCFEVAMLREKFPE 2179 (2341)
T ss_pred CcHHHHHHHHHHhCCChhHHHHHhhhhHHHHHHHHHHHHHhhccccchhhhhhhhcccceEEechHHHHHHHHhhccccc
Confidence 6666777777778899999999999999999999999999999999999999999999999999999999999887 699
Q ss_pred CCCccccHHHHHhhcCCCccchHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccccccCCC-----------------
Q 000134 1969 LVPFRLTQNMIDGLGITGYEGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSS----------------- 2031 (2096)
Q Consensus 1969 ~VPFRLT~nmv~~mG~~G~eG~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~~~~~~----------------- 2031 (2096)
.+||||||+.+++|.+.|.+|.|+.+|+.+++++|.+++.+|+++++|+|||++.|.......
T Consensus 2180 ~~pfRlTrmli~amev~gl~g~~~~t~e~v~~~lr~~~~sl~a~leafvydplinwr~~~~~~~~~~~~~~~~~~~~~~~ 2259 (2341)
T KOG0891|consen 2180 KVPFRLTRMLINAMEVTGIEGTYRITCEHVMRVLRTNKESLMAVLEAFVYDPLINWRLDDVLSPGKDEEEVGEKDPLKNR 2259 (2341)
T ss_pred cccHHHHHHHHHhHHHHhhhhHHHHHHHHHHHhhcCChHHHHHHHHhhhcccchhhhcccccchhhhhcccCCCCcccch
Confidence 999999999999999999999999999999999999999999999999999999998752100
Q ss_pred ----------C---c----c----ccchhHHHHHHHHHHHhhccccccCCCCCCCCCHHHHHHHHHHHHhCcchhhhcCC
Q 000134 2032 ----------G---V----E----VENPHAQRAISNIEARLQGSVVGVGAAPSLPLAVEGQARRLIAEAVSHKNLGKMYI 2090 (2096)
Q Consensus 2032 ----------~---~----~----~~n~~a~~~l~~i~~kL~g~~~~~~~~~~~~lsv~~qV~~LI~~Atd~~nL~~My~ 2090 (2096)
+ . + ..|+.+..+++++..++.|+ +..+..+++|..||..||++||+|+|||+-|+
T Consensus 2260 ~e~~~~~a~~~~~~~~~~~~~~~e~~n~~~~~vl~~~~~kltg~----~~~~~~~l~v~~qv~~l~~qats~e~lc~~yi 2335 (2341)
T KOG0891|consen 2260 KELGLPRAMAGEEIAVLESSVKPEALNARAIQVLKRISDKLTGR----DFVHEEPLDVPEQVEKLIQQATSPENLCQCYI 2335 (2341)
T ss_pred hhhccHHhhhccccccccccccccccChhhHHHHHhccccccee----eccCcccCcHHHHHHHHHHhhcChHhhhcccc
Confidence 0 0 0 01223344566666666654 34456789999999999999999999999999
Q ss_pred cccCCC
Q 000134 2091 WWMPWF 2096 (2096)
Q Consensus 2091 gW~Pwl 2096 (2096)
||||+|
T Consensus 2336 gwcpfw 2341 (2341)
T KOG0891|consen 2336 GWCPFW 2341 (2341)
T ss_pred cCCCCC
Confidence 999965
No 4
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.1e-77 Score=816.80 Aligned_cols=1034 Identities=18% Similarity=0.254 Sum_probs=742.3
Q ss_pred HHHhhhhhhccHhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHHHHhccccCCCCCCcccCCCchhhhHHHHHHHHHHhhh
Q 000134 911 FNACRGIVRHDMQTAIYLLPYLVLNAVCHGTEEARLGIAQEILSVLDAAASDHSGASVHGISGQSEVCIQAIFTLLDNLG 990 (2096)
Q Consensus 911 F~~c~~iir~D~~ia~fLLPylvl~il~~g~~e~~~~I~~Ei~~VL~~~~~~~~~~~~~~~~~~~~~~~q~vF~vlD~l~ 990 (2096)
..+++.+.-+|...++.+.=+++..+...-+++++.++..++...+..+. .. . ...|-- .-++
T Consensus 2339 l~~l~~i~~~~~~~a~~~w~~~Fp~~w~~l~~de~~~~~~~~i~flS~~~------h~--~---q~~~~p------nvln 2401 (3550)
T KOG0889|consen 2339 LDPLLQIQHHDDKVAEKLWVGLFPIVWSSLSKDEIRNLAGSIIPFLSSGY------HI--K---QQGCRP------NVLN 2401 (3550)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhhcCHhhhhcccchhccccccch------hh--h---hhccch------hHHH
Confidence 33445556678899999999999999998888888888888888775321 11 0 011111 1123
Q ss_pred HHHHHHHHHhhhhhcchhcccCCCCCCCCCcchhhHHHHHhhhHhhhccCCCHHHHHHHHHhchhHHHHHHHHHHHHhhh
Q 000134 991 QWVDDVKQELALSESLTSKQQGSKSKHPASSMHQDQLLTQCQYVSGLLSAIPKVTLARASFRCQAYARSLMYFESHVREK 1070 (2096)
Q Consensus 991 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~fL~~Ip~~lLA~aA~~C~ayaRAL~ylE~~~r~~ 1070 (2096)
.|+...-+ +... -.+|+.++..-+-.-|+|.+++.++|.+.-..
T Consensus 2402 ~~v~s~~~-----------------------------------~~~~-~~lpp~Li~yl~kt~~~wh~~I~lLE~~~~~~ 2445 (3550)
T KOG0889|consen 2402 ALVESLVK-----------------------------------IVPP-IELPPHLIKYLGKTYNLWHTSIRLLEDHQSNK 2445 (3550)
T ss_pred HHHHHHHh-----------------------------------hccC-CCCCHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 33332110 0111 16899999999999999999999999987654
Q ss_pred cCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhccCChhHHHHHhHhhcCHHHHHHHHHHHHccCCC----
Q 000134 1071 SGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSNKKSGNWAEVFTSCEQALQMEPT---- 1146 (2096)
Q Consensus 1071 ~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~~sl~~qil~~E~~G~W~~A~~~YE~~Lq~~p~---- 1146 (2096)
.... ....++..++|.+||..|+|-|+.+|+|+.+.....+.+++.||+.|.|+.||..||++.-+.-.
T Consensus 2446 ~~~~-------~~~~~~~~dsl~elY~~L~E~Dm~~Glwrrr~~~~eT~~a~s~eQ~G~~e~AQ~lyekaq~Ka~~~~~~ 2518 (3550)
T KOG0889|consen 2446 EMEN-------TKGDESCLDSLAELYRSLNEEDMFYGLWRRRAKFPETMVALSYEQLGFWEEAQSLYEKAQVKAREGAIP 2518 (3550)
T ss_pred Hhhh-------hhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhccHHHHHHHHHHHhhhHHHHhhHHHHHHHHHhcccCC
Confidence 2110 01134668999999999999999999999999999999999999999999999999999753221
Q ss_pred --chh---hhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChhhHHHhhcccCccCccccCCCC
Q 000134 1147 --SVQ---RHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSES 1221 (2096)
Q Consensus 1147 --~~~---~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd~l~~~l~~~~~~gl~~~~~~~ 1221 (2096)
..+ .+-.|++|..+|.|||.+.+++....+ +..-+|||||+.+|..+++.+.+..+ +...
T Consensus 2519 ~~~~Ey~lWed~WI~Ca~eL~QWdvl~e~~k~~~~---------~~llle~aWrlsdw~~~~~~l~~~~~------~~~~ 2583 (3550)
T KOG0889|consen 2519 YSESEYKLWEDHWIRCASELQQWDVLTEFGKHEGN---------YELLLECAWRLSDWNDQKDALEQKAK------SLSD 2583 (3550)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---------ceeeeehhccCCcchhHHHHHHHhhh------ccCC
Confidence 122 234799999999999999998854221 24668999999999999998876553 2234
Q ss_pred CcchhHHHHHHHHHHHccCch---hHHHHHHHHHHHhhhhhhccchhhHHhhhHHHHHhhhhhHHHHHHHhhhccccc-c
Q 000134 1222 NASFDMDVAKILQAMMKKDHF---SVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFL-E 1297 (2096)
Q Consensus 1222 ~~~f~~~l~kaL~al~~~d~~---~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~kLH~L~ELee~~~~~~~~~~~-~ 1297 (2096)
...|...+++++.++.+.+.. ++...|.++-+.-+..|.+.+..+++.+++++..+|++.|++|+..+..+.... .
T Consensus 2584 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~e~~~l~i~~w~~lP~~v~~~h~~lL~~~QqivEl~Ea~~I~s~l~~~n~ 2663 (3550)
T KOG0889|consen 2584 VPGFRKELYDAFLALQKKNSNGVGEFERLIGEAIQLAIREWRQLPERVNHGHVPLLQAFQQIVELQEAAQIYSDLNDGNV 2663 (3550)
T ss_pred CCcHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 457888999999998876554 566778888888888999999889999999999999999999999887542211 1
Q ss_pred ccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcC-----C----------------CCchhHHHHHHHH
Q 000134 1298 KSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGAS-----G----------------LGAEVGNCWLQYA 1356 (2096)
Q Consensus 1298 ~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~-----~----------------~~~~~~~~WL~~A 1356 (2096)
++....-.+++.++++|++|++.+++++..|+.+..||+++|+.. . .-.+.++.-+++|
T Consensus 2664 ~n~~~~~~d~Ksil~~Wr~RlP~~~Dd~~~Wsdl~~WRq~~y~~I~~~~~~~~~~~~~~~ns~~~~~Gyhe~A~~in~fa 2743 (3550)
T KOG0889|consen 2664 QNLDNKAQDIKSILQTWRDRLPNVWDDMNQWSDLITWRQHAYSMINKAYLPLVPYKQNASNSNNLYRGYHELAWAINRFA 2743 (3550)
T ss_pred cccchhHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHhcccchhhhccCCcchHHHhHHHHHHHHHHHH
Confidence 222233468999999999999999999999999999999998641 0 1135566668999
Q ss_pred HHHHHcCChHHHHHHHHHHhhcCCChHHHHHH--HHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCC
Q 000134 1357 KLCRLAGHYETATRAILEAQASGAPNVHMEKA--KLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNP 1434 (2096)
Q Consensus 1357 klARKag~~~~A~~all~a~~~~~~~~~iE~A--KLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 1434 (2096)
|+|||+|..+.|.+-+.+...+ |+..+..| |+--+-..+-+--..+..+++ +.++
T Consensus 2744 kvArkh~l~~vcl~~L~~iytl--p~veiqdaF~K~req~~c~l~~~~e~~~gLe-----vi~s---------------- 2800 (3550)
T KOG0889|consen 2744 KVARKHGLPDVCLNQLAKIYTL--PNVEIQDAFQKLREQAKCYLQNKNELKTGLE-----VIES---------------- 2800 (3550)
T ss_pred HHHHhcCChHHHHHHHHHHhcc--CcchHHHHHHHHHHHHHHHhcChHHHHHHHH-----HHhc----------------
Confidence 9999999999999999887544 43333222 221100000000012222222 1110
Q ss_pred CCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccC
Q 000134 1435 LPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEI 1514 (2096)
Q Consensus 1435 ~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~~~~~~e~~~~~ 1514 (2096)
.++..-.++.+|..+-+.|.+..+.|. .+++.+.|..|++++....|+|+.||+|+|+++...+. +
T Consensus 2801 -----TNl~yF~~~q~aeff~lkG~f~~kL~~--~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~----n--- 2866 (3550)
T KOG0889|consen 2801 -----TNLMYFSDRQKAEFFTLKGMFLEKLGK--FEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPV----N--- 2866 (3550)
T ss_pred -----ccHHHHhhHHHHHHHHhhhHHHHHhcC--cchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCc----c---
Confidence 112222345678889999999988887 78889999999999999999999999999999843211 0
Q ss_pred CcchhhhhchHHHHHHHHHHhhccCC-cchhhhHHHHHHhhhhcCccccccCCCChhhhHhHHHHHHHHHHhhcCCCCCc
Q 000134 1515 GPSEKRWWFYVPDVLLFYAKGLHRGH-KNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAY 1593 (2096)
Q Consensus 1515 g~~~~~~~~~l~~ai~~Y~~sl~~g~-~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~iP~~ 1593 (2096)
..+..+|+.||++|+.+++ ...+..+.|+|||.--+ +..+.+.+++++++..||+|
T Consensus 2867 -------i~~a~~avsCyLqA~~~~~~skaRk~iakvLwLls~d----------------da~~~l~~~~~k~l~~ip~~ 2923 (3550)
T KOG0889|consen 2867 -------ISFACNAVSCYLQAARLYNSSKARKLIAKVLWLLSFD----------------DSLGTLGDVFDKFLGEIPVW 2923 (3550)
T ss_pred -------cHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhc----------------cccchHHHHHHHhhccCCch
Confidence 2367799999999999875 46889999998877221 22335778899999999999
Q ss_pred hhhhhhHHhhhccccCchHHHHHHHHHHHHHHHhchhhHHHHHHHhhcC----------------CChhHHHHHHHHHHH
Q 000134 1594 QWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKS----------------TIPSRREAAAEIIQA 1657 (2096)
Q Consensus 1594 ~wl~~lPQLisRl~h~~~~v~~~l~~il~kv~~~yPqq~lw~l~~~~~S----------------~~~~R~~~~~~Il~~ 1657 (2096)
.|++|+|||+..+.|.+ ...+..|+.|+++.||||+++++...... .....-.|..+|...
T Consensus 2924 ~wl~~IPQLl~sLs~~e---~~~~~~iL~kia~~yPQal~f~lRta~~~~~i~qR~~~~~~~~~~~~~~p~~r~~~i~~~ 3000 (3550)
T KOG0889|consen 2924 NWLYFIPQLLTSLSKKE---AKLVRLILIKIAKSYPQALYFPLRTAREDLVIEQRQQVEVMGDKSDTTDPMGRPSKISQK 3000 (3550)
T ss_pred hhhhhhHHHHhhccccc---hhHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcHHHHHHH
Confidence 99999999999999988 67899999999999999999999765421 111111222233333
Q ss_pred HHhcCCCCC-----------------chhchHHH--------HH-------------------HHHHHHHHHhhccCCcc
Q 000134 1658 AKKGSAHGN-----------------SANNLFGQ--------FT-------------------SLIDHLIKLCFHAGQSK 1693 (2096)
Q Consensus 1658 ~~~~~~~~~-----------------~~~~li~~--------~~-------------------~l~~~Li~l~~~~~~~~ 1693 (2096)
.+...+..+ ...++..+ +. ++...+.. +......+
T Consensus 3001 ~r~~~p~~~s~~~~ld~~~~~w~~~~~l~~il~~~~~~la~~~~~~~~~i~~~~~~~~~e~~~r~v~al~~-~~~~~~~~ 3079 (3550)
T KOG0889|consen 3001 QRNLHPILSSLEKILDSVQLVWERLFDLEEILKTAYQLLAKTLETLFDKIQARFKSTPEEHALRLVNALLN-IDGIQNGN 3079 (3550)
T ss_pred hhccCcchhhHHhhhccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccHHHHHHHHHHHH-Hhhhcccc
Confidence 332222000 00001111 01 11111111 10000000
Q ss_pred --------cccc---------------------chhHhhHHHHhhccCCcccc---------------------------
Q 000134 1694 --------SRTI---------------------NISTEFSALKRMMPLGIIMP--------------------------- 1717 (2096)
Q Consensus 1694 --------~~~~---------------------~l~~~f~~l~~~~~~~~i~P--------------------------- 1717 (2096)
.... .+..+|......+|+..-++
T Consensus 3080 r~~ivt~~~~~~~~~~~~l~~~~~~vl~~~~~~~~k~dFi~~~~~~~~~~~l~~~i~klk~w~~~le~k~~~~pk~~~LE 3159 (3550)
T KOG0889|consen 3080 RLGIVTKNTKSLSDTEMNLNRFASNVLPDPVRKKFKEDFITNKDGMKCICDLENYIDKLRKWRSRLESKVDRFPKKLNLE 3159 (3550)
T ss_pred ccccccccccCCcchHHHHHHHHHHhcchHHHHHHHHHHHhcccCCcccccHHHHHHHHHHHHHHHHHHHhcccccccHH
Confidence 0000 01111211111011111111
Q ss_pred ---------cccccccccCCCCCCCCCCCCCCCCCCCCcceEeeecCceEEe-cCCCcceEEEEEecCCCeeeEEe--cC
Q 000134 1718 ---------IQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIADEAEIL-SSLQRPKKIVLLGSDGIKRPFLC--KP 1785 (2096)
Q Consensus 1718 ---------~~~~l~~~LP~~~~~~~~~~~~~~f~~~~~v~I~~f~~~v~V~-~S~q~PkrI~i~gsDGk~y~fL~--K~ 1785 (2096)
.+++..+++|+++....+.. +..+.|.+|.|.|+++ +....-||+++||+||+.|+|.+ |+
T Consensus 3160 ~~s~~L~~F~hq~~evEiPGqyl~~k~~~-------~~~v~I~RF~P~veiv~~~~~~~rRl~iRG~dGk~~~~~~~~~~ 3232 (3550)
T KOG0889|consen 3160 EKSRFLSNFSHQFDEVEIPGQYLLDKSNN-------NYFVKIERFEPRVEIVRGHGMSYRRLYIRGSDGKIYPFAVQYPG 3232 (3550)
T ss_pred hhchHHhcccccCCcccCChHHhcccchh-------hhhhhHHHhccchhhhcccceeEEEEEEeccCCeecceeeeccc
Confidence 11134566777665432111 4678999999999988 45668999999999999997664 66
Q ss_pred CCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceeeecCCcceeEecCCCccHHHHHHHHHHhcCCCccccCChH
Q 000134 1786 KDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQ 1865 (2096)
Q Consensus 1786 ~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~ 1865 (2096)
-.+-|+++|++|+++++|..|.+++|++||++.+.++.++|+++...|+|.+|+..|+.+|++++++..|...+.+....
T Consensus 3233 ~~~sRreErvlQL~r~lN~~l~~~~Et~rR~l~~~~p~~ipvs~q~rl~ed~ps~~tl~~I~~~~c~~~~~~~D~~i~~~ 3312 (3550)
T KOG0889|consen 3233 LRNSRREERVLQLFRMLNESLGKNKETRRRHLEFKLPIVIPVSSQMRLVEDKPSSITLQEIYEEYCARNNVSPDDPILLY 3312 (3550)
T ss_pred CCCccHHHHHHHHHHHHHHHhccChhhhhhhcCccCceeeeccCceEEecCCcchhhHHHHHHHHHHhcCCCcchhhHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999998885544333222
Q ss_pred HHHHHHHHhc--CCChH-----HHHHHhhcCCCch-HHHHHHHhhCCChhHHHHHHHHHHHHhhHHHHHhhhccccCCCC
Q 000134 1866 IKRIYDQFQG--KIPED-----EMLKTKILPMFPP-VFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHG 1937 (2096)
Q Consensus 1866 ~~~~~~~~~~--~~~~~-----~~~~~~i~~~~~p-vl~~wf~~~f~~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~ 1937 (2096)
..++-..... ..+.. ++++.....+.|. ++++||.++|++|.++|.+|++|+.++|++++..|++.+|.|.|
T Consensus 3313 ~d~l~~~~~~~~~~~~~~~lr~~i~e~i~~~~vp~sil~dy~~~tf~~~~d~w~frk~f~~qla~~~~~~~~lni~~~~p 3392 (3550)
T KOG0889|consen 3313 FDRLAQAYSVLIGLTAAHQLRGQIFEDIQKTMVPRSILKDYFYKTFTNYSDFWTFRKQFTDQLAVFSFMEYMLNINGRGP 3392 (3550)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcCChhhhhhhHhHHHHHHHHHHHHHHHHhcCCCCc
Confidence 2222111111 11222 2233333345564 89999999999999999999999999999999999999999999
Q ss_pred CceeeecCCCcEEeeeccccc-cccCCCCCCCCCCccccHHHHHhhcCCCccchHHHHHHHHHHHHHhChhhHHHHHHHH
Q 000134 1938 ENILFDSTTGDCVHVDFSCLF-DKGLLLEKPELVPFRLTQNMIDGLGITGYEGTFLRVCEITLSVLRTHRETLMSVLETF 2016 (2096)
Q Consensus 1938 eNILld~~tG~vvHIDF~~~F-~kg~~l~~pE~VPFRLT~nmv~~mG~~G~eG~F~~~~~~t~~~LR~~~~~L~~iLe~f 2016 (2096)
+.+++.++||.+...||-+-. +..+.+...|.|||||||||+.++|-.|+||.+..++.++.++|-++.+.+-.++..|
T Consensus 3393 ~k~~~~~dsG~v~~~~~~~~~~~~~~~~~~~~~VpFRlTpni~~~i~~~~veg~l~~s~~a~ar~l~~p~~~l~~~l~~~ 3472 (3550)
T KOG0889|consen 3393 AKLTFAKDSGKVFNTDFLPSYISSKPIFHNNEPVPFRLTPNIQEFIGDFGVEGLLAGSMMAIARCLIEPDFELDPYLQLF 3472 (3550)
T ss_pred cceeeeeccccccchhhccCcccCccccccCCcCCeeecCCchhhhcchhhhhhhHHHHHHHHHHHhCCccchhHHHHHH
Confidence 999999999999999995544 6666778899999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcccccccCCCCccccchh----HHHHHHHHHHHhhccccccCCCCCCCCCHHHHHHHHHHHHhCcchhhhcCCcc
Q 000134 2017 IHDPLVEWTKSHKSSGVEVENPH----AQRAISNIEARLQGSVVGVGAAPSLPLAVEGQARRLIAEAVSHKNLGKMYIWW 2092 (2096)
Q Consensus 2017 l~Dpl~~W~~~~~~~~~~~~n~~----a~~~l~~i~~kL~g~~~~~~~~~~~~lsv~~qV~~LI~~Atd~~nL~~My~gW 2092 (2096)
++|++..|........ ..++. ....++.|-.|+..+... ...+......+..||.+|+|++|||||+|.|
T Consensus 3473 ~RDE~~~w~~~~~~~~--~~~~~~~~~v~~~v~~i~rrv~~~~~~----~~ge~~~~~t~~~lis~A~s~~nLaqmDp~w 3546 (3550)
T KOG0889|consen 3473 FRDEIISWFKQQTKGV--PADPLLEEMVNSNVDLIMRRVASLSSE----NSGELPDNQTVIDLISQATSPDNLAQMDPTW 3546 (3550)
T ss_pred HHHHHHHHhhccccCC--cCChhhhhhHHHHHHHHhhhhhhhccc----cccCCCCCccHHHHHHHhcChhhhhcCCccc
Confidence 9999999987533211 11221 234445555555433221 1112222226889999999999999999999
Q ss_pred cCCC
Q 000134 2093 MPWF 2096 (2096)
Q Consensus 2093 ~Pwl 2096 (2096)
+|||
T Consensus 3547 ~pWl 3550 (3550)
T KOG0889|consen 3547 HPWL 3550 (3550)
T ss_pred cccC
Confidence 9997
No 5
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=100.00 E-value=2.5e-71 Score=789.26 Aligned_cols=466 Identities=30% Similarity=0.527 Sum_probs=354.5
Q ss_pred CCCchhhhhhHHhhhccccCchHHHHHHHHHHHHHHHhchhhHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCC-C-c
Q 000134 1590 LPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSRREAAAEIIQAAKKGSAHG-N-S 1667 (2096)
Q Consensus 1590 iP~~~wl~~lPQLisRl~h~~~~v~~~l~~il~kv~~~yPqq~lw~l~~~~~S~~~~R~~~~~~Il~~~~~~~~~~-~-~ 1667 (2096)
++...|+++++|+.+|+.+++.+ |+..+...+|.+..|...+...+....+.......+++... +... . .
T Consensus 1634 l~~~~~~~~l~q~~~r~~~~~~~-------i~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~ 1705 (2105)
T COG5032 1634 LLHLLFEPILAQLLSRLSSENNK-------ISVALLIDKPLHEERENFPSGLSLSSFQSSFLKELIKKSPR-KIRKKFKI 1705 (2105)
T ss_pred hhhhhHHHHHHHHHHHhcccchH-------HHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHhhhHH-HHHHHHHh
Confidence 56666999999999999999864 66677777899988888776655555566666666655410 0000 0 0
Q ss_pred hhchHHHHHHHH-HHHHHHhhccCCccccccchhHhhHHHHhhccCCcccccccccccccCCCCCCCCCCCCCCCCCCCC
Q 000134 1668 ANNLFGQFTSLI-DHLIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQSLTVTLPPQDANLTESPSSDIFSASD 1746 (2096)
Q Consensus 1668 ~~~li~~~~~l~-~~Li~l~~~~~~~~~~~~~l~~~f~~l~~~~~~~~i~P~~~~l~~~LP~~~~~~~~~~~~~~f~~~~ 1746 (2096)
..........+. +.+-+.+ . .........+. +..|.....|- ++...+|+.+... ++
T Consensus 1706 D~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~---~~~~~~~~~~~--~~e~~~P~~~~~~-----------k~ 1763 (2105)
T COG5032 1706 DISLLNLSRKLYISVLRSIR--K----RLKRLLELRLK---KVSPKLLLFHA--FLEIKLPGQYLLD-----------KP 1763 (2105)
T ss_pred hhhhhhhhHHHHHHHHHHHH--H----HhHHHHHHHhc---ccCHHHHhccc--cccccCCcccccC-----------CC
Confidence 000000111111 1111110 0 00000000111 01111111111 4556677654321 46
Q ss_pred cceEeeecCceEEecC-CCcceEEEEEecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeeccee
Q 000134 1747 LPTISGIADEAEILSS-LQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVI 1825 (2096)
Q Consensus 1747 ~v~I~~f~~~v~V~~S-~q~PkrI~i~gsDGk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~Vi 1825 (2096)
.|+|.+|.|++.+++| .++||+++++|+||+.|+|+||++||+|||+|+||++++||++|+++++|+||++.|++|+|+
T Consensus 1764 ~v~I~~f~p~~~~~~~~~~~p~rl~~rgsdG~~y~~i~K~~dDlRQD~~~~Ql~~l~n~iL~~~~~~~~R~l~i~~Y~Vi 1843 (2105)
T COG5032 1764 FVLIERFEPEVSVVKSHLQRPRRLTIRGSDGKLYSFIVKGGDDLRQDELALQLIRLMNKILKKDKETRRRDLWIRPYKVI 1843 (2105)
T ss_pred CceEEEecCceeeeecccccceEEEEEecCCcEEEEEeecCccchHHHHHHHHHHHHHHHHHhChHhhhcCccceeeeeE
Confidence 7899999999999988 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhc-CCChHHHHHHhhcCCCchHHHHHHHhhCC
Q 000134 1826 PLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQG-KIPEDEMLKTKILPMFPPVFHKWFLTTFS 1904 (2096)
Q Consensus 1826 PLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~pvl~~wf~~~f~ 1904 (2096)
|++|+||+||||||+.|+++|+.+++++.+....... ++...+.. +....+.+.......+||+|++||.+.||
T Consensus 1844 pls~~~GiIe~vpn~~tl~sI~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~f~ 1918 (2105)
T COG5032 1844 PLSPGSGIIEWVPNSDTLHSILREYHKRKNISIDQEK-----KLAARLDNLKLLLKDEFFTKATLKSPPVLYDWFSESFP 1918 (2105)
T ss_pred eccCCcceEEEecCcchHHHHHHHHhhhcCCChhHHh-----hhhhhhhhhcccchhHHhhhhhcCCCchHHHHHHHhcC
Confidence 9999999999999999999999999987765432111 11111111 11112234456667788999999999999
Q ss_pred ChhHHHHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeecc-ccccccCCCCCCCCCCccccHHHHHhhc
Q 000134 1905 EPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFS-CLFDKGLLLEKPELVPFRLTQNMIDGLG 1983 (2096)
Q Consensus 1905 ~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~-~~F~kg~~l~~pE~VPFRLT~nmv~~mG 1983 (2096)
+|.+|+.+|++|++|+|+|||+|||||+|||||+|||+|+.||+++||||| |+|++|..++.||.||||||+||+++||
T Consensus 1919 ~~~~w~~aR~Ny~~SlA~ySvigYiLglgDRH~~NIliD~~sG~viHiDFg~il~~~p~~~~~pE~vPFrLT~~iv~~mg 1998 (2105)
T COG5032 1919 NPEDWLTARTNFARSLAVYSVIGYILGLGDRHPGNILIDRSSGHVIHIDFGFILFNAPGRFPFPEKVPFRLTRNIVEAMG 1998 (2105)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHccCCCcCCceEEEEcCCCcEEEehHHHHHhcCCCCCCCcccCcHhhhHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999995 5666788899999999999999999999
Q ss_pred CCCccchHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccccccCCCCccccchhHHHHHHHHHHHhhccccccCCCCC
Q 000134 1984 ITGYEGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSSGVEVENPHAQRAISNIEARLQGSVVGVGAAPS 2063 (2096)
Q Consensus 1984 ~~G~eG~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~~~~~~~~~~~n~~a~~~l~~i~~kL~g~~~~~~~~~~ 2063 (2096)
+.|+||.||.+|+.++++||+|.+.||+++++|++||+++|...+... +..+..+.++.+++..|+.|.. ....
T Consensus 1999 ~~g~EG~Fr~~c~~~~~~LRk~~~~L~~~le~f~~d~l~~W~~~p~~~--~~~~~~~~~v~~rf~~kl~~~~----~~~~ 2072 (2105)
T COG5032 1999 VSGVEGSFRELCETAFRALRKNADSLMNVLELFVRDPLIEWRRLPCFR--EIQNNEIVNVLERFRLKLSEKD----AEKF 2072 (2105)
T ss_pred ccchhhHHHHHHHHHHHHHhccHHHHHHHHHHHhcCcchhhhcCcccc--chHHHHHHHHHHHHHHHhhhhh----hhhh
Confidence 999999999999999999999999999999999999999998543322 2223334455555666665543 3344
Q ss_pred CCCCHHHHHHHHHHHHhCcchhhhcCCcccCCC
Q 000134 2064 LPLAVEGQARRLIAEAVSHKNLGKMYIWWMPWF 2096 (2096)
Q Consensus 2064 ~~lsv~~qV~~LI~~Atd~~nL~~My~gW~Pwl 2096 (2096)
.+++|+++|+.||.+|||+.|||+||+||||||
T Consensus 2073 ~~l~I~~sv~~li~~a~d~~~L~~~yi~w~~f~ 2105 (2105)
T COG5032 2073 VDLLINKSVESLITQATDPFQLATMYIGWMPFW 2105 (2105)
T ss_pred cCCcHHHHHHHHHHHHcCHHHHHhhccccccCC
Confidence 689999999999999999999999999999997
No 6
>cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transi
Probab=100.00 E-value=5.7e-65 Score=605.11 Aligned_cols=273 Identities=40% Similarity=0.690 Sum_probs=244.2
Q ss_pred EeeecCceEEecCCCcceEEEEEecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceeeecC
Q 000134 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTE 1829 (2096)
Q Consensus 1750 I~~f~~~v~V~~S~q~PkrI~i~gsDGk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~ 1829 (2096)
|.+|.|+|.|++|+|+||||+++|+||+.|.||+|++||+|+|+|+|||+++||++|.+++||++|+|.++||+|+||++
T Consensus 1 ~~~f~~~v~v~~s~~~Pkri~~~gsdG~~y~fl~K~~dDlR~D~rimQl~~~~n~il~~~~e~~~r~l~i~~y~vipls~ 80 (279)
T cd05171 1 VSKFKDVFTTAGGINAPKIITCVGSDGKKYKQLLKGGDDDRQDAVMEQVFQLVNTLLERNKETRKRKLRIRTYKVVPLSP 80 (279)
T ss_pred CCCccCeEEEecCCCCCEEEEEECCCCCEEEEEecCCCcccHHHHHHHHHHHHHHHHhhChhhhhcCceeecceEEecCC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHh--cCCC---hHHHHHHhhcCCCchHHHHHHHhhCC
Q 000134 1830 DCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQ--GKIP---EDEMLKTKILPMFPPVFHKWFLTTFS 1904 (2096)
Q Consensus 1830 ~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~i~~~~~pvl~~wf~~~f~ 1904 (2096)
++||||||+|+.|+++|+++++...+.... ......+...... .... ..+.| +++++.++|++++||...|+
T Consensus 81 ~~GLIe~v~~~~tl~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~r~~~f-~~i~~~~~p~l~~~f~~~~~ 157 (279)
T cd05171 81 RAGILEWVDGTIPLGEYLVGATGAHERYRP--GDWTARKCRKAMAEVQKESNEERLKVF-LKICKNFRPVFRYFFLEKFL 157 (279)
T ss_pred CceEEEECCCChhHHHHHHHhhhcccccCc--cchhHHHHHHHHHHhhcCCHHHHHHHH-HHHHHhCcHHHHHHHHHHCc
Confidence 999999999999999999987643333221 1111111111111 1111 12233 56777889999999999999
Q ss_pred ChhHHHHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCCCCCCCCCCccccHHHHHhhcC
Q 000134 1905 EPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMIDGLGI 1984 (2096)
Q Consensus 1905 ~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l~~pE~VPFRLT~nmv~~mG~ 1984 (2096)
+|.+||.+|++|++|+|+|||+|||||||||||+||||++.||+++|||||++|++|+.+++||.|||||||||+++||+
T Consensus 158 ~~~~~~~~r~~F~~S~A~~s~~~yilglgDRh~~NIll~~~tG~v~hiDf~~~f~~~~~l~~pe~vPFRLT~~~~~~lg~ 237 (279)
T cd05171 158 DPQDWFERRLAYTRSVATSSIVGYILGLGDRHANNILIDEKTAEVVHIDLGIAFEQGKILPVPETVPFRLTRDIVDGMGI 237 (279)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccEEEEcCcCcEEEEechhhhccCcCCCCCCcCChhhhHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccc
Q 000134 1985 TGYEGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWT 2025 (2096)
Q Consensus 1985 ~G~eG~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~ 2025 (2096)
.|++|.|+.+|++++++||++++.|+++|++|+|||+++|.
T Consensus 238 ~g~~g~f~~~~~~~~~~Lr~~~~~l~~~l~~fv~dpl~~W~ 278 (279)
T cd05171 238 TGVEGVFRRCCEKTLEVLRDNKDAILTILEVLLYDPLYSWT 278 (279)
T ss_pred CCCcchHHHHHHHHHHHHHcChHHHHHHHHHHHhCcccccc
Confidence 99999999999999999999999999999999999999996
No 7
>cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno
Probab=100.00 E-value=2.3e-64 Score=606.24 Aligned_cols=277 Identities=33% Similarity=0.626 Sum_probs=241.8
Q ss_pred EeeecCceEEecCCCcceEEEEEecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceeeecC
Q 000134 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTE 1829 (2096)
Q Consensus 1750 I~~f~~~v~V~~S~q~PkrI~i~gsDGk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~ 1829 (2096)
|.+|+++|.|++|+++||+|+++|+||+.|+||+|++||+|+|+|+||||++||.+|++++++++|+|.|+||.||||++
T Consensus 1 I~~f~~~v~V~~Sk~~Pkri~~~gsDG~~y~fLlK~~dDLR~D~RimQlf~l~N~ll~~~~~~~~r~L~i~tY~ViPLs~ 80 (307)
T cd05170 1 IESVGSTVTILPTKTKPKKLAFLGSDGKKYTYLFKGREDLHLDERIMQFLSIVNTMFASIKDQESPRFRARHYSVTPLGP 80 (307)
T ss_pred CccccCeEEEEecCCCceEEEEECCCCCEEEEEecCCCcccHHHHHHHHHHHHHHHHHhChhhhccCceeecceEEEcCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEecCCCccHHHHHHHHHHhcCCCcc------c-----------cCChHHHHHHHHHhc-CC------C--hH---
Q 000134 1830 DCGMVEWVPHTRGLRNILQDIYISCGKFDR------Q-----------KTNPQIKRIYDQFQG-KI------P--ED--- 1880 (2096)
Q Consensus 1830 ~~GLIEwv~n~~tl~~il~~~~~~~g~~~~------~-----------~~~~~~~~~~~~~~~-~~------~--~~--- 1880 (2096)
++||||||+|+.||.+|+.+++.+.+.... . +......++...... .. . ..
T Consensus 81 ~~GLIEwv~~~~tl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 160 (307)
T cd05170 81 RSGLIQWVDGATPLFGLYKRWQQREAVLQAQKSQVGYQNPQIPGIVPRPSDLFYNKITPALKAHGLSLDVSRRDWPLSVL 160 (307)
T ss_pred CcceEEEcCCChhHHHHHHHHHHhhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHhhccccccchhhccHHHH
Confidence 999999999999999999987765432100 0 000011122111110 00 0 00
Q ss_pred HHHHHhhcCCCch-HHHHHHHhhCCChhHHHHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeecccccc
Q 000134 1881 EMLKTKILPMFPP-VFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFD 1959 (2096)
Q Consensus 1881 ~~~~~~i~~~~~p-vl~~wf~~~f~~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~ 1959 (2096)
.....++++..|+ .+.++++..+++|.+||.+|++||+|+|+|||+|||||||||||+||||++.||+++|||||++|+
T Consensus 161 ~~~~~~i~~~~~~~~l~~~~~~~~~~~~~w~~~r~~f~~s~A~~s~~~yilglgDRh~~NIli~~~tG~v~hiDf~~~f~ 240 (307)
T cd05170 161 RQVLDELMQETPKDLLARELWCSSTTSSEWWSVTQRYARSTAVMSMIGYVIGLGDRHLDNVLIDLKTGEVVHIDYNVCFE 240 (307)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCccEEEEcCCCcEEEEeeHhhhc
Confidence 1122455666776 688899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCccccHHHHHhhcCCCccchHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCccccc
Q 000134 1960 KGLLLEKPELVPFRLTQNMIDGLGITGYEGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTK 2026 (2096)
Q Consensus 1960 kg~~l~~pE~VPFRLT~nmv~~mG~~G~eG~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~ 2026 (2096)
+|+.+++||.|||||||||+++||+.|+||.|+.+|+.++++||++++.|+++|++|+|||+++|+.
T Consensus 241 ~~~~l~~pE~VPFRLT~~~~~~lg~~g~~G~f~~~~~~~~~~Lr~~~~~l~~~l~~fv~DPl~~W~~ 307 (307)
T cd05170 241 KGKSLRIPEKVPFRMTQNIETALGLTGVEGVFRLSCEQVLHIMRRGRETLLTLLEAFVYDPLVDWTA 307 (307)
T ss_pred ccCCCCCCCCCCeeeCHHHHHHhCCCCCchhHHHHHHHHHHHHHcCHHHHHHHHHHHhhCccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999963
No 8
>cd05169 PIKKc_TOR TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with
Probab=100.00 E-value=4.1e-64 Score=600.64 Aligned_cols=271 Identities=36% Similarity=0.644 Sum_probs=241.5
Q ss_pred EeeecCceEEecCCCcceEEEEEecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceeeecC
Q 000134 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTE 1829 (2096)
Q Consensus 1750 I~~f~~~v~V~~S~q~PkrI~i~gsDGk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~ 1829 (2096)
|.+|+|+|.|++|+++||+|+++|+||+.|+|++|++||+|||+|+||+++++|.+|++++|||+|+|.++||+|||+++
T Consensus 1 I~~f~~~v~v~~s~~~pk~i~~~gsdG~~y~fl~K~~dDlR~D~r~~ql~~~~n~il~~~~~~~~~~l~~~ty~Vipls~ 80 (280)
T cd05169 1 ISSFDPVLKVIPSKQRPRRLTIVGSDGKEYKFLLKGHEDLRLDERVMQLFGLINTLLKNDSETSKRNLSIQTYSVIPLSP 80 (280)
T ss_pred CccccCeEEEEeCCCCCeEEEEECCCCCEEEEeecCCCcchHHHHHHHHHHHHHHHHHhChhhhhcCcceeeccEEecCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHH---HHhcCC---ChHHHHHHhhcCCCc-hHHHHHHHhh
Q 000134 1830 DCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYD---QFQGKI---PEDEMLKTKILPMFP-PVFHKWFLTT 1902 (2096)
Q Consensus 1830 ~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~i~~~~~-pvl~~wf~~~ 1902 (2096)
++||||||+|+.|+.+|+++++...+.... .....+.. ...... .+.+.|++ +++..| ++|++||+..
T Consensus 81 ~~GlIE~v~~~~sl~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~k~~~~~~-i~~~~~~~~l~~~~~~~ 155 (280)
T cd05169 81 NVGLIGWVPGCDTLHSLIREYRKKRNIPLN----LEHRLMELKSAPDYDNLTLIQKLEVFEY-ALNNTPGDDLRKILWLK 155 (280)
T ss_pred CcceEEeCCCCchHHHHHHHHHHHcCCChh----HHHHHHHHHhhhhhhhCCHHHHHHHHHH-HHHhCCHHHHHHHHHHh
Confidence 999999999999999999998776553221 11111100 000111 12344444 444444 5999999999
Q ss_pred CCChhHHHHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCCC-CCCCCCCccccHHHHHh
Q 000134 1903 FSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLL-EKPELVPFRLTQNMIDG 1981 (2096)
Q Consensus 1903 f~~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l-~~pE~VPFRLT~nmv~~ 1981 (2096)
|++|.+|+.+|++|++|+|+|||+|||||||||||+|||||+.||+++|||||++|++|+.+ ++||.|||||||||+++
T Consensus 156 ~~~~~~w~~~r~~F~~S~A~~Sv~~YilglgDRH~~NIll~~~tG~v~HIDfg~~f~~~~~~~~~pE~VPFRLT~~~~~~ 235 (280)
T cd05169 156 SPSSEAWLERRTNFTRSLAVMSMVGYILGLGDRHPSNIMIDRLTGKVIHIDFGDCFEVAMHREKFPEKVPFRLTRMLVNA 235 (280)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhheeccCCCcceEEEEcCCCCEEEEecHHHHhhccccCCCCCcCCcccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999874 78999999999999999
Q ss_pred hcCCCccchHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccc
Q 000134 1982 LGITGYEGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWT 2025 (2096)
Q Consensus 1982 mG~~G~eG~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~ 2025 (2096)
||+.|++|.|+.+|+.++++||+|++.|+++|++|+|||+++|.
T Consensus 236 lG~~g~~G~F~~~~~~~~~~Lr~~~~~l~~~l~~f~~dpl~~W~ 279 (280)
T cd05169 236 LGVSGIEGTFRTTCEDVMNVLRENKESLMAVLEAFVHDPLLSWR 279 (280)
T ss_pred hCCCCCCCchHHHHHHHHHHHhcChHHHHHHHHHHHhCcccccc
Confidence 99999999999999999999999999999999999999999996
No 9
>cd05163 TRRAP TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replicat
Probab=100.00 E-value=9.2e-64 Score=585.01 Aligned_cols=247 Identities=27% Similarity=0.436 Sum_probs=229.3
Q ss_pred EeeecCceEEe-cCCCcceEEEEEecCCCeeeEEec--CCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceee
Q 000134 1750 ISGIADEAEIL-SSLQRPKKIVLLGSDGIKRPFLCK--PKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIP 1826 (2096)
Q Consensus 1750 I~~f~~~v~V~-~S~q~PkrI~i~gsDGk~y~fL~K--~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViP 1826 (2096)
|++|.|+++|+ +|+++||||+++|+||+.|+|||| +++|+|+|+|+|||++++|.+|.+++||++|+|.+++|.|||
T Consensus 1 i~rf~p~~~iv~~~~~~pkri~i~gsdG~~y~fLvk~~~~~d~R~d~Ri~Ql~~liN~~l~~~~et~~r~l~i~~y~viP 80 (253)
T cd05163 1 IERFLPTVEIVRGHGYCYRRLTIRGHDGSIYPFLVQYPAARQARREERVLQLFRTLNSVLSKNKETRRRNLQFTLPLVVP 80 (253)
T ss_pred CcccCCeEEEEccCCCcCcEEEEECCCCCEEEEEEecCCchhHHHHHHHHHHHHHHHHHHhcCHHHHhCcccccceeEEE
Confidence 57899999976 788999999999999999999998 578999999999999999999999999999999999999999
Q ss_pred ecCCcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhc-CCCch-HHHHHHHhhCC
Q 000134 1827 LTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKIL-PMFPP-VFHKWFLTTFS 1904 (2096)
Q Consensus 1827 Ls~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~p-vl~~wf~~~f~ 1904 (2096)
|++++|||||++++.|+++++.. ..+.+. +++ ...|+ +|++||+++|+
T Consensus 81 Ls~~~gLie~~~~~~tl~~i~~~-----------------------------~~~~~~-~i~~~~~p~~~l~~~~~~~~~ 130 (253)
T cd05163 81 LSPQIRLVEDDPSYISLQEIYED-----------------------------KLEIYN-EIQKDMVPDTILKNYILSTFP 130 (253)
T ss_pred cCCccceEEECCCCccHHHHHHH-----------------------------HHHHHH-HHHHhcCCHHHHHHHHHHHCC
Confidence 99999999999999999999753 011122 222 22454 99999999999
Q ss_pred ChhHHHHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCCC-CCCCCCCccccHHHHHhhc
Q 000134 1905 EPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLL-EKPELVPFRLTQNMIDGLG 1983 (2096)
Q Consensus 1905 ~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l-~~pE~VPFRLT~nmv~~mG 1983 (2096)
+|++||.+|++||+|+|+|||+|||+|||||||+|||++..||+|+|||||++|++|..+ ++||.|||||||||+++||
T Consensus 131 ~~~~~~~~r~~ft~s~A~~s~~gYilglgdRh~~nili~~~tG~v~hiDf~~~f~~~~~~~~~pE~VPFRLT~ni~~~~g 210 (253)
T cd05163 131 TYQDYWLFRKQFTYQLALLSFMTYILSINNRNPDKIFISRDTGNVYQSDLLPSINNNKPLFHNNEPVPFRLTPNIQHLIG 210 (253)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhEEEEcCCCcEEEEeeeeeecCCCcCCCCCCcCCcccCHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999876 8999999999999999999
Q ss_pred CCCccchHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCccccc
Q 000134 1984 ITGYEGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTK 2026 (2096)
Q Consensus 1984 ~~G~eG~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~ 2026 (2096)
++|+||.|+.+|++++++||++++.|+++|++|+|||+++|.+
T Consensus 211 ~~g~eG~f~~~~~~~~~~Lr~~~~~l~~~L~~fi~Dpl~~W~~ 253 (253)
T cd05163 211 PIGLEGILTSSMMAIARCLTEPEFDLENALQLFIRDELIAWHK 253 (253)
T ss_pred CcCcCCcHHHHHHHHHHHHhcCHHHHHHHHHHHHcChhhhhcC
Confidence 9999999999999999999999999999999999999999963
No 10
>cd05172 PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double st
Probab=100.00 E-value=4.6e-63 Score=573.21 Aligned_cols=234 Identities=34% Similarity=0.627 Sum_probs=227.3
Q ss_pred EeeecCceEEecCCCcceEEEEEecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceeeecC
Q 000134 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTE 1829 (2096)
Q Consensus 1750 I~~f~~~v~V~~S~q~PkrI~i~gsDGk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~ 1829 (2096)
|.+|.+++.|++|+++||+|+++|+||+.|+||+|++||+|||+|+||+++++|.+|++++++++|++.++||.|+|+++
T Consensus 1 i~~~~~~v~v~~S~~~Pkri~~~~~dG~~~~fl~K~~dDlR~D~r~~Ql~~l~n~~l~~~~~~~~~~l~~~~y~vipls~ 80 (235)
T cd05172 1 IVGFDERVLVLSSLRKPKRITIRGSDEKEYPFLVKGGEDLRQDQRIQQLFGVMNNILAQDTACRQRALQLRTYQVIPMTP 80 (235)
T ss_pred CCCcCCceEEeccCCCCEEEEEECCCCCEEEEEEECCCcccHHHHHHHHHHHHHHHHHhChhhccCCceeecceEEEeCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHHHHHhhCCChhHH
Q 000134 1830 DCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAW 1909 (2096)
Q Consensus 1830 ~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf~~~f~~p~~w 1909 (2096)
++||||||+++.|+++|+++ +++++||.+.+++|.+|
T Consensus 81 ~~GlIE~v~~~~sl~~i~~~-------------------------------------------~~l~~~~~~~~~~~~~~ 117 (235)
T cd05172 81 RFGLIEWLENTTPLKEILKN-------------------------------------------DLLRRALVEMSASPEAF 117 (235)
T ss_pred CCceEEEcCCchhHHHHHhh-------------------------------------------HHHHHHHHHHCCCHHHH
Confidence 99999999999999999753 46788999999999999
Q ss_pred HHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCC-CCCCCCCCccccHHHHHhhcCCCcc
Q 000134 1910 FRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLL-LEKPELVPFRLTQNMIDGLGITGYE 1988 (2096)
Q Consensus 1910 ~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~-l~~pE~VPFRLT~nmv~~mG~~G~e 1988 (2096)
|.+|++|++|+|++|++|||||||||||+||||++.||+++|||||++|++++. +++||.|||||||||+++||+.|+|
T Consensus 118 ~~~r~~F~~S~A~~S~~~YilglgDRH~~NIli~~~tG~v~HIDfg~~f~~~~~~~~~pE~vPFRLT~~~~~~~g~~g~~ 197 (235)
T cd05172 118 LSLRDHFAKSLAAMCVSHWILGIGDRHLSNFLVDLETGGLVGIDFGHAFGTATQFLPIPELMPFRLTPQFVNLMEPMKAD 197 (235)
T ss_pred HHHHHHHHHHHHHHHHHhheeeccCCCcccEEEECCCCcEEEEeeHhhhccCCccCCCCCCCCeeeCHHHHHHhCCCCCC
Confidence 999999999999999999999999999999999999999999999999999987 8899999999999999999999999
Q ss_pred chHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCccccc
Q 000134 1989 GTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTK 2026 (2096)
Q Consensus 1989 G~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~ 2026 (2096)
|.|+.+|+.++++||++++.|+++|++|+|||+++|.+
T Consensus 198 G~f~~~~~~~~~~Lr~~~~~l~~~l~~f~~dpl~~w~~ 235 (235)
T cd05172 198 GLLRSCMVHTLRALRNERHLLLSTMDVFVKEPSLDWKN 235 (235)
T ss_pred ChHHHHHHHHHHHHHcCHHHHHHHHHHHhhCchhhhcC
Confidence 99999999999999999999999999999999999963
No 11
>cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central
Probab=100.00 E-value=1e-61 Score=563.30 Aligned_cols=237 Identities=72% Similarity=1.248 Sum_probs=230.5
Q ss_pred EeeecCceEEecCCCcceEEEEEecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceeeecC
Q 000134 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTE 1829 (2096)
Q Consensus 1750 I~~f~~~v~V~~S~q~PkrI~i~gsDGk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~ 1829 (2096)
|.+|++++.|++|+++||+|+++|+||+.|.||+|++||||||+|+||+++++|.+|.++++|++|++.++||.|+|+++
T Consensus 1 i~~~~~~~~v~~s~~~P~~i~~~~~dG~~~~~l~K~~dDLRqD~ri~ql~~l~n~il~~~~~~~~~~l~~~~y~Vipl~~ 80 (237)
T cd00892 1 ISGFEDEVEILNSLQKPKKITLIGSDGNSYPFLCKPKDDLRKDARLMEFNTLINRLLSKDPESRRRRLYIRTYAVIPLNE 80 (237)
T ss_pred CccccCeEEEEeccCCceEEEEEcCCCCEEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCchhccCceeeEeceEEEcCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHHHHHhhCCChhHH
Q 000134 1830 DCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAW 1909 (2096)
Q Consensus 1830 ~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf~~~f~~p~~w 1909 (2096)
++||||||+|+.|+.+++++++ ||+|++||.++|++|.+|
T Consensus 81 ~~GlIE~v~~~~sl~~i~~~~~----------------------------------------~~~l~~~~~~~~~~~~~~ 120 (237)
T cd00892 81 ECGIIEWVPNTATLRSILLEIY----------------------------------------PPVFHEWFLENFPDPSAW 120 (237)
T ss_pred CCceEEECCCCccHHHHHHHhC----------------------------------------CHHHHHHHHHHCcCHHHH
Confidence 9999999999999999986532 578999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCCCCCCCCCCccccHHHHHhhcCCCccc
Q 000134 1910 FRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMIDGLGITGYEG 1989 (2096)
Q Consensus 1910 ~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l~~pE~VPFRLT~nmv~~mG~~G~eG 1989 (2096)
+.+|++|+.|+|++|++|||||+|||||+||||++.||+++|||||++|++|+.+++||.|||||||||+++||+.|++|
T Consensus 121 ~~~~~~F~~SlA~~s~~~YilgigDRh~~NIli~~~tG~~~HIDfg~~~~~~~~~~~pe~vPFRLT~~~~~~lg~~g~~g 200 (237)
T cd00892 121 LKARNAYTRSTAVMSMVGYILGLGDRHGENILFDSNTGDVVHVDFNCLFDKGETLEVPERVPFRLTQNMVDAMGVLGVEG 200 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCcccEEEEcCCCcEEEEehHhhhcccccCCCCCCCCcccCHHHHHHhCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCccccc
Q 000134 1990 TFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTK 2026 (2096)
Q Consensus 1990 ~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~ 2026 (2096)
.|+.+|+.++++||+|++.|+++|++|+|||+++|.+
T Consensus 201 ~F~~~~~~~~~~Lr~~~~~l~~~l~~fi~dpl~~w~~ 237 (237)
T cd00892 201 LFRKSCEVTLRLLRSNKETLMSVLETFIHDPLVEWSK 237 (237)
T ss_pred chHHHHHHHHHHHHhCHHHHHHHHHHHhhccchhccC
Confidence 9999999999999999999999999999999999974
No 12
>cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) d
Probab=100.00 E-value=4.4e-58 Score=528.41 Aligned_cols=222 Identities=55% Similarity=0.955 Sum_probs=217.1
Q ss_pred EeeecCceEEecCCCcceEEEEEecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceeeecC
Q 000134 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTE 1829 (2096)
Q Consensus 1750 I~~f~~~v~V~~S~q~PkrI~i~gsDGk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~ 1829 (2096)
|.+|++++.|++|+++||+|+++|+||+.|.||+|++||+|+|+|+||+++++|.+|+++.||++|++.++||.|+|+++
T Consensus 1 i~~~~~~v~v~~S~~~P~~i~~~~~dG~~~~fl~K~~dDlR~D~rv~ql~~~~n~il~~~~~~~~~~l~~~~y~vipls~ 80 (222)
T cd05164 1 IASFDDAVRILGSKQKPKKITLTGSDGKKYLFLVKGGEDLRQDQRIMQLFQFCNTLLAKDAECRRRKLTIRTYAVIPLNS 80 (222)
T ss_pred CccccCeeEEecccCCCEEEEEECCCCCEEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCchhccCceEeecceEEEcCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHHHHHhhCCChhHH
Q 000134 1830 DCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAW 1909 (2096)
Q Consensus 1830 ~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf~~~f~~p~~w 1909 (2096)
++||||||+|+.|+. ++|++||...|++|++|
T Consensus 81 ~~GliE~v~~~~sl~------------------------------------------------~~l~~~~~~~~~~~~~~ 112 (222)
T cd05164 81 RSGLIEWVEGTTTLK------------------------------------------------PVLKKWFWLQFPDPEQW 112 (222)
T ss_pred CCceEEEcCCcchHH------------------------------------------------HHHHHHHHHHCcCHHHH
Confidence 999999999999986 45678999999999999
Q ss_pred HHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCCCCCCCCCCccccHHHHHhhcCCCccc
Q 000134 1910 FRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMIDGLGITGYEG 1989 (2096)
Q Consensus 1910 ~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l~~pE~VPFRLT~nmv~~mG~~G~eG 1989 (2096)
|.+|++|+.|+|++|++|||+|+|||||+||||++.||+++|||||++|++|+.+++||.|||||||||+++||+.|++|
T Consensus 113 ~~~r~~F~~SlA~~s~~~YvlglgDRh~~NIli~~~tG~v~hIDf~~~~~~~~~~~~~e~vPFRLT~~~~~~lg~~g~~G 192 (222)
T cd05164 113 FAARKNYTRSTAVMSIVGYILGLGDRHLDNILIDRETGEVVHIDFGCIFEKGKTLPVPELVPFRLTRNIINGMGITGVEG 192 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCceEEEECCCCcEEEEccHHhhccCCCCCCCCCCCEEeCHHHHHHhCCCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhChhhHHHHHHHHhcC
Q 000134 1990 TFLRVCEITLSVLRTHRETLMSVLETFIHD 2019 (2096)
Q Consensus 1990 ~F~~~~~~t~~~LR~~~~~L~~iLe~fl~D 2019 (2096)
.|+.+|+.++++||+|++.|+++|++|+||
T Consensus 193 ~f~~~~~~~~~~Lr~~~~~l~s~l~~fv~d 222 (222)
T cd05164 193 LFRKICEQTLEVFRKHRDTLIAFLEVFVYD 222 (222)
T ss_pred hHHHHHHHHHHHHHhCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999997
No 13
>cd00142 PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the
Probab=100.00 E-value=2.5e-53 Score=490.14 Aligned_cols=219 Identities=35% Similarity=0.636 Sum_probs=212.3
Q ss_pred EeeecCceEEecCCCcceEEEEEecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceeeecC
Q 000134 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTE 1829 (2096)
Q Consensus 1750 I~~f~~~v~V~~S~q~PkrI~i~gsDGk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~ 1829 (2096)
+.+|.+.+.|++|+++||+|+++|+||+.|+|++|++||+|||+|+||+++++|.+|++++ ++++.+++|.|+|+++
T Consensus 1 ~~~~~~~~~v~~s~~~P~~l~~~~~dg~~~~~l~K~~ddlR~D~~~~ql~~~~n~il~~~~---~~~l~~~~y~vipls~ 77 (219)
T cd00142 1 IAIDVKICRIMPSKTRPKKLTLIGADGKEYRILFKNGDDLRQDERVLQFIRLMNKILKKEL---GLDLFLTTYSVIPLSP 77 (219)
T ss_pred CCccCCceEEEcccCCCEEEEEEccCCCEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhCC---CCCceEEeEEEEEecC
Confidence 3578899999999999999999999999999999999999999999999999999999886 7899999999999999
Q ss_pred CcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHHHHHhhCCChhHH
Q 000134 1830 DCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAW 1909 (2096)
Q Consensus 1830 ~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf~~~f~~p~~w 1909 (2096)
++||||||+|+.|+. ++|++||...+++|++|
T Consensus 78 ~~GlIE~v~~~~sl~------------------------------------------------~~l~~~~~~~~~~~~~~ 109 (219)
T cd00142 78 RSGLIEVVPGSVTLE------------------------------------------------DDLSKWLKRKSPDEDEW 109 (219)
T ss_pred CceEEEEeCCCchhH------------------------------------------------HHHHHHHHHHCcCHHHH
Confidence 999999999999986 56788999999999999
Q ss_pred HHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCCCCCCCCCCccccHHHHHhhcCCCccc
Q 000134 1910 FRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMIDGLGITGYEG 1989 (2096)
Q Consensus 1910 ~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l~~pE~VPFRLT~nmv~~mG~~G~eG 1989 (2096)
+.+|++|+.|+|++|++|||+|+|||||+||||++.||+++|||||++|++++.+..||.|||||||||+++||+.|++|
T Consensus 110 ~~~~~~F~~SlA~~s~~~YilglgDRh~~NIli~~~~G~~~hIDfg~~~~~~~~~~~~e~vPFRLT~~~~~~~g~~~~~g 189 (219)
T cd00142 110 QEARENFISSLAGYSVAGYILGIGDRHPDNIMIDLDTGKLFHIDFGFIFGKRKKFLGRERVPFRLTPDLVNALGTGGVFG 189 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCccEEEECCCCeEEEEeeHHhhCcCcCCCCCCCCCEeccHHHHHHhCCcchhh
Confidence 99999999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhChhhHHHHHHHHhcC
Q 000134 1990 TFLRVCEITLSVLRTHRETLMSVLETFIHD 2019 (2096)
Q Consensus 1990 ~F~~~~~~t~~~LR~~~~~L~~iLe~fl~D 2019 (2096)
.|+.+|+.++++||+|++.|+++|++|++|
T Consensus 190 ~F~~~~~~~~~~lr~~~~~i~~ll~~~~~~ 219 (219)
T cd00142 190 PFRSLCVKAMLILRRHAGLLLNLLSLMLRD 219 (219)
T ss_pred hHHHHHHHHHHHHHhChHHHHHHHHHhccC
Confidence 999999999999999999999999999987
No 14
>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c
Probab=100.00 E-value=7e-52 Score=502.38 Aligned_cols=279 Identities=22% Similarity=0.366 Sum_probs=244.0
Q ss_pred CCcceEeeec-CceEEecCCCcceEEEEEecC--CCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeee
Q 000134 1745 SDLPTISGIA-DEAEILSSLQRPKKIVLLGSD--GIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRT 1821 (2096)
Q Consensus 1745 ~~~v~I~~f~-~~v~V~~S~q~PkrI~i~gsD--Gk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~t 1821 (2096)
.+.+.|.+|. +++.|++|+++|++|++.|+| |+.|.|++|++||||||+++||++++||.+|+++. .+|+++|
T Consensus 54 ~p~~~i~~i~~~~~~v~~S~~~P~~l~f~~~d~~g~~~~~i~K~gDDLRqD~l~~Ql~~l~~~i~~~~~----ldl~l~~ 129 (352)
T cd00891 54 DPRLEIKGLIIEKCKVMDSKKKPLWLVFKNADPSGEPIKVIFKVGDDLRQDMLTLQMIRLMDKIWKKEG----LDLRMTP 129 (352)
T ss_pred CCceEEEEEeccceEEeccccCCcEEEEEecCCCCCEEEEEeccCCchhHHHHHHHHHHHHHHHHHHCC----CCeeeEE
Confidence 4678999996 679999999999999999999 99999999999999999999999999999998874 6899999
Q ss_pred cceeeecCCcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHHHHHh
Q 000134 1822 FAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLT 1901 (2096)
Q Consensus 1822 Y~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf~~ 1901 (2096)
|.|+|+++++|+||||+|+.|+++|..++....| .|+ .+.+++||.+
T Consensus 130 Y~Vip~~~~~GlIE~V~ns~tl~~I~~~~~~~~~--------------------------~~~-------~~~l~~~~~~ 176 (352)
T cd00891 130 YGCIATGDGVGMIEVVPNSETIAKIQKKAGGVGG--------------------------AFK-------DNPLMNWLKK 176 (352)
T ss_pred EEEEEccCCceEEEEeCCCccHHHHHHhcCcccc--------------------------ccc-------cchHHHHHHH
Confidence 9999999999999999999999999765211100 011 1357899999
Q ss_pred hCCChhHHHHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCC-CC-CCCCCCccccHHHH
Q 000134 1902 TFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLL-LE-KPELVPFRLTQNMI 1979 (2096)
Q Consensus 1902 ~f~~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~-l~-~pE~VPFRLT~nmv 1979 (2096)
.+++|.+|..+|.+|++|+|+|||+||||||||||++||||+ .+|+++|||||++|+.++. +. .||.||||||++|+
T Consensus 177 ~~~~~~~~~~a~~nF~~S~A~ysv~~YiLgigDRH~~NILi~-~~G~~~HIDFG~ilg~~~~~~~~~~E~~PFrLT~~mv 255 (352)
T cd00891 177 KNKGEEDYEKAVENFTYSCAGYCVATYVLGIGDRHNDNIMLT-KTGHLFHIDFGHFLGNFKKKFGIKRERAPFVLTPDMA 255 (352)
T ss_pred hCCCHHHHHHHHHHHhhhHHHHHHHHHHccccccCCCceEEC-CCCCEEEEehHHhhccCCccCCCCCCCCCeeecHHHH
Confidence 999999999999999999999999999999999999999999 5999999999999987653 44 59999999999999
Q ss_pred HhhcCCCcc--chHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccccccCCCCccccchhHHHHHHHHHHHhhccccc
Q 000134 1980 DGLGITGYE--GTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSSGVEVENPHAQRAISNIEARLQGSVVG 2057 (2096)
Q Consensus 1980 ~~mG~~G~e--G~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~~~~~~~~~~~n~~a~~~l~~i~~kL~g~~~~ 2057 (2096)
++||+.|.+ |.|+..|+.++.+||+|.+.|++++++|+++++.+|.. .+.+..+++|+..-..
T Consensus 256 ~~mGg~~s~~~~~F~~~c~~~~~~LR~~~~~il~l~~lm~~~~lp~~~~--------------~~~i~~l~~r~~l~~s- 320 (352)
T cd00891 256 YVMGGGDSEKFQRFEDLCCKAYNILRKHGNLFINLFSLMLSAGIPELQS--------------IEDIEYLRDALALDKS- 320 (352)
T ss_pred HHhCCCCCcccchHHHHHHHHHHHHhcCHHHHHHHHHhhccCCCCccCc--------------HHHHHHHHHHhCCCCC-
Confidence 999999966 99999999999999999999999999999999988752 2457788888874321
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhCcc
Q 000134 2058 VGAAPSLPLAVEGQARRLIAEAVSHK 2083 (2096)
Q Consensus 2058 ~~~~~~~~lsv~~qV~~LI~~Atd~~ 2083 (2096)
.-....++..+|++|.+..
T Consensus 321 -------~~~a~~~~~~lI~~s~~~~ 339 (352)
T cd00891 321 -------DEEATEYFRKLIHESLNSK 339 (352)
T ss_pred -------HHHHHHHHHHHHHHHHhcc
Confidence 1235567889999998764
No 15
>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin
Probab=100.00 E-value=7.9e-52 Score=500.85 Aligned_cols=284 Identities=21% Similarity=0.392 Sum_probs=250.5
Q ss_pred CCCCCcceEeeec-CceEEecCCCcceEEEEEecCC---CeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCe
Q 000134 1742 FSASDLPTISGIA-DEAEILSSLQRPKKIVLLGSDG---IKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKL 1817 (2096)
Q Consensus 1742 f~~~~~v~I~~f~-~~v~V~~S~q~PkrI~i~gsDG---k~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L 1817 (2096)
+|..+.+.|.++. +++.|++|+++|++|++.|+|| +.|.|++|++||||||+|+||++++||.+|+++. ++|
T Consensus 55 lP~dp~~~i~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~~~~i~K~gDDLRqD~l~~Ql~~lm~~il~~~~----ldl 130 (350)
T cd00896 55 LPLDPSIEITGIIPEESSVFKSALMPLKLTFKTEKGNEEGEYPVIFKVGDDLRQDQLVIQIISLMDRLLKKEN----LDL 130 (350)
T ss_pred CCCCCCeEEEEEecCceEEeccccCceEEEEEeCCCCCCceEEEEecCCcchhHhHHHHHHHHHHHHHHHhCC----CCc
Confidence 3445678899986 6899999999999999999999 9999999999999999999999999999999874 799
Q ss_pred eeeecceeeecCCcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHH
Q 000134 1818 YIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHK 1897 (2096)
Q Consensus 1818 ~i~tY~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~ 1897 (2096)
+++||.|+|+++++|+||||+ +.|+++|..++.. +.+
T Consensus 131 ~l~~Y~Vip~~~~~GlIE~V~-s~tl~~i~~~~~~------------------------------------------l~~ 167 (350)
T cd00896 131 KLTPYKVLATSPTDGLVEFIP-SVTLASILKKYGG------------------------------------------ILN 167 (350)
T ss_pred eeEEEEEEEcCCCCcceEEEe-cccHHHHHHHHHH------------------------------------------HHH
Confidence 999999999999999999999 9999999765210 457
Q ss_pred HHHhhCCChhHH----HHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCCCCCCCCCCcc
Q 000134 1898 WFLTTFSEPAAW----FRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFR 1973 (2096)
Q Consensus 1898 wf~~~f~~p~~w----~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l~~pE~VPFR 1973 (2096)
||...++++..| ..+|.+|++|+|+|||+||||||||||++||||+ .+|+++|||||++|++++ .|+.||||
T Consensus 168 ~l~~~~~~~~~~~~~~~~a~~nF~~S~A~ysvv~YiLGigDRH~~NILi~-~~G~~~HIDFG~ilg~~p---~~~~~PFr 243 (350)
T cd00896 168 YLRKLNPDDGGPLGISPEVMDTFVKSCAGYCVITYILGVGDRHLDNLLLT-KDGKLFHIDFGYILGRDP---KPFPPPMK 243 (350)
T ss_pred HHHHHCCCccccccchHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEc-CCCCEEEEEhHHhhCCCC---CCCCCCee
Confidence 888888888774 7999999999999999999999999999999999 599999999999999984 58889999
Q ss_pred ccHHHHHhhcCCCccc--hHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccccccCCCCccccchhHHHHHHHHHHHh
Q 000134 1974 LTQNMIDGLGITGYEG--TFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSSGVEVENPHAQRAISNIEARL 2051 (2096)
Q Consensus 1974 LT~nmv~~mG~~G~eG--~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~~~~~~~~~~~n~~a~~~l~~i~~kL 2051 (2096)
||++|+++||+.|.+| .|+..|+.++.+||+|.+.|++++++|+++++.+|... ..+++..+++|+
T Consensus 244 LT~~mv~~mGg~~s~~~~~F~~~c~~~~~~lR~~~~~il~l~~lm~~~~ip~~~~~------------~~~~i~~l~~rf 311 (350)
T cd00896 244 LCKEMVEAMGGAQSEGYQEFKSYCCEAYNILRKSANLILNLFSLMVDANIPDIALD------------PDKAILKVQEKF 311 (350)
T ss_pred ccHHHHHHhCCCCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHHHcCCCCcccccC------------HHHHHHHHHHHh
Confidence 9999999999999999 99999999999999999999999999999999887541 246788999998
Q ss_pred hccccccCCCCCCCCCHHHHHHHHHHHHhCcc--hhhhcCCcccCCC
Q 000134 2052 QGSVVGVGAAPSLPLAVEGQARRLIAEAVSHK--NLGKMYIWWMPWF 2096 (2096)
Q Consensus 2052 ~g~~~~~~~~~~~~lsv~~qV~~LI~~Atd~~--nL~~My~gW~Pwl 2096 (2096)
.--.. .-....++..||++|.+.. ++.-++..|..||
T Consensus 312 ~l~~s--------~~ea~~~~~~lI~~s~~~~~t~~~d~~h~~aq~~ 350 (350)
T cd00896 312 RLDLS--------DEEAIKHFQNLINDSVNALFPVVVDRLHAWAQYW 350 (350)
T ss_pred CCCCC--------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 73221 1134567999999999874 6777777787765
No 16
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=100.00 E-value=6.7e-51 Score=492.48 Aligned_cols=277 Identities=22% Similarity=0.378 Sum_probs=240.0
Q ss_pred CCcceEeeec-CceEEecCCCcceEEEEEecC--CCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeee
Q 000134 1745 SDLPTISGIA-DEAEILSSLQRPKKIVLLGSD--GIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRT 1821 (2096)
Q Consensus 1745 ~~~v~I~~f~-~~v~V~~S~q~PkrI~i~gsD--Gk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~t 1821 (2096)
.+.+.|.++. +++.|++|+++|++|++.|+| |+.|.+++|++||||||+++||++++||++|+++. .+|+++|
T Consensus 54 ~p~~~~~~i~~~~~~v~~S~~~P~~l~f~~~d~~g~~~~~i~K~gDDLRQD~l~~Qli~lm~~i~~~~~----ldL~l~~ 129 (353)
T cd05166 54 NPALDVKGIDVRECSYFNSNALPLKISFVNADPMGENISVIFKAGDDLRQDMLVLQMINIMDKIWLQEG----LDLRMIT 129 (353)
T ss_pred CCceEEEeEEcCceEEeccccCceEEEEEecCCCCCEEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCC----CCceeEE
Confidence 4567788886 789999999999999999999 99999999999999999999999999999998864 6899999
Q ss_pred cceeeecCCcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHHHHHh
Q 000134 1822 FAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLT 1901 (2096)
Q Consensus 1822 Y~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf~~ 1901 (2096)
|.|+|+++++|+||||+|+.|+++|..++ |.. +. ++ .+.+++||..
T Consensus 130 Y~vip~~~~~GlIE~V~ns~tl~~I~~~~----g~~-----------------~~------~~-------~~~l~~~l~~ 175 (353)
T cd05166 130 FRCLSTGYDRGMVELVPDAETLRKIQVEE----GLT-----------------GS------FK-------DRPIAKWLMK 175 (353)
T ss_pred EEEEEcCCCcceEEEeCCchhHHHHHHHh----Ccc-----------------cc------cc-------chhHHHHHHH
Confidence 99999999999999999999999986542 110 00 00 1367899999
Q ss_pred hCCChhHHHHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCCCC--CCCCCCccccHHHH
Q 000134 1902 TFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLE--KPELVPFRLTQNMI 1979 (2096)
Q Consensus 1902 ~f~~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l~--~pE~VPFRLT~nmv 1979 (2096)
.+|++.+|..+|.+|++|+|+|||+|||||+||||++|||++ .+|+++|||||++|++++.+. .||.||||||++|+
T Consensus 176 ~~~~~~~~~~a~~nF~~S~A~ysvv~YiLgigDRH~~NILl~-~~G~l~HIDFG~~lg~~~~~~~~~~E~~PFrLT~emv 254 (353)
T cd05166 176 HNPSELEYEKAVENFIYSCAGCCVATYVLGICDRHNDNIMLT-KSGHMFHIDFGKFLGHAQMFGGFKRDRAPFVFTSDMA 254 (353)
T ss_pred hCCChHHHHHHHHHHHhHHHHHHHHHHHhhccccCCCceEEC-CCCCEEEEeeHHhcccccccccCCCCCCCccccHHHH
Confidence 999999999999999999999999999999999999999999 699999999999999887543 48999999999999
Q ss_pred HhhcCC----CccchHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccccccCCCCccccchhHHHHHHHHHHHhhccc
Q 000134 1980 DGLGIT----GYEGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSSGVEVENPHAQRAISNIEARLQGSV 2055 (2096)
Q Consensus 1980 ~~mG~~----G~eG~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~~~~~~~~~~~n~~a~~~l~~i~~kL~g~~ 2055 (2096)
++||.. +.+|.|+..|+.++.+||+|.+.|++++++|+++++.+|.. ...+..+++|+.--.
T Consensus 255 ~~~ggg~~~s~~~~~F~~~c~~~~~~lRk~~~~il~ll~~ml~s~lp~~~~--------------~~~i~~l~~r~~l~~ 320 (353)
T cd05166 255 YVINGGDKPTQRFQDFVDLCCRAYNIIRKHANLLLNLLRMMACSGLPELSK--------------IQDLKYVRDALRPQL 320 (353)
T ss_pred HHhcCCCCCcchHhHHHHHHHHHHHHHHcChHHHHHHHHHHhcCCCcccCc--------------hhHHHHHHHHhCCCC
Confidence 999854 34679999999999999999999999999999999999963 135677888876322
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHhCc
Q 000134 2056 VGVGAAPSLPLAVEGQARRLIAEAVSH 2082 (2096)
Q Consensus 2056 ~~~~~~~~~~lsv~~qV~~LI~~Atd~ 2082 (2096)
. .-....++..+|++|.+.
T Consensus 321 s--------~~ea~~~~~~~I~~s~~s 339 (353)
T cd05166 321 T--------DAEATIQFTKMIQSSLGS 339 (353)
T ss_pred C--------HHHHHHHHHHHHHHHHhh
Confidence 1 113456788999999754
No 17
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=100.00 E-value=9.2e-51 Score=480.00 Aligned_cols=266 Identities=21% Similarity=0.362 Sum_probs=232.7
Q ss_pred CCcceEEEEEecCCC--eeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceeeecCCcceeEecCCC
Q 000134 1763 LQRPKKIVLLGSDGI--KRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHT 1840 (2096)
Q Consensus 1763 ~q~PkrI~i~gsDGk--~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~~~GLIEwv~n~ 1840 (2096)
++|||+.+..|+.+. .|.|++|++||||||+|+||++++||.+|+++ +++|.++||.|+|+++++|+||||+|+
T Consensus 15 ~~r~r~~s~~~~~~~~~~~~~i~K~gDDLRqD~l~~Ql~~~~~~i~~~~----~l~l~l~~Y~vip~~~~~GlIE~V~ns 90 (293)
T cd05168 15 KERIRKSSPYGHLKSWDLRSVIVKTGDDLRQELLAMQLIQQFDRIFKEE----GLPLWLRPYEILVTSSNSGLIETIPDT 90 (293)
T ss_pred HHHhhhcCccCcCCCCCEEEEEEeCCCCccHHHHHHHHHHHHHHHHHHC----CCCceeeeEEEEEccCCceeEEEeCCc
Confidence 679999999998755 89999999999999999999999999999976 478999999999999999999999999
Q ss_pred ccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHHHHHhhCCCh-hHHHHHHHHHHHH
Q 000134 1841 RGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEP-AAWFRARVAYAHT 1919 (2096)
Q Consensus 1841 ~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf~~~f~~p-~~w~~~R~~ft~S 1919 (2096)
.|+++|..++.. ..+.+++||.+.|++| ..|+.+|.+|++|
T Consensus 91 ~tl~~i~k~~~~--------------------------------------~~~~l~~~f~~~~~~~~~~~~~a~~nF~~S 132 (293)
T cd05168 91 VSIDSLKKKLTS--------------------------------------KFKSLLDFFKKTFGDPSERFREAQKNFIES 132 (293)
T ss_pred hhHHHHHHHhcc--------------------------------------CCchHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 999998654210 1357889999999886 5799999999999
Q ss_pred hhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCCCCCCCCCCccccHHHHHhhcCCCcc--chHHHHHHH
Q 000134 1920 TAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMIDGLGITGYE--GTFLRVCEI 1997 (2096)
Q Consensus 1920 ~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l~~pE~VPFRLT~nmv~~mG~~G~e--G~F~~~~~~ 1997 (2096)
+|+|||+||||||||||++||||++ +|+++|||||++|++++....||.||||||++|+++||+.|.+ |.|+..|+.
T Consensus 133 ~A~ySvv~YvLGigDRH~~NILi~~-~G~liHIDFG~~fg~~~~~~~~E~vPFrLT~~mv~~mGg~~s~~~~~F~~~c~~ 211 (293)
T cd05168 133 LAGYSLICYLLQIKDRHNGNILIDN-DGHIIHIDFGFMLSNSPGNVGFETAPFKLTQEYIEVMGGVNSDLFNYFKKLFLK 211 (293)
T ss_pred HHHHHHHHHHhhccccCCCceEEcC-CCCEEEEehHHhhcccccCCCCCCCCEEecHHHHHHhCCCCCchhHHHHHHHHH
Confidence 9999999999999999999999996 9999999999999999888889999999999999999999987 899999999
Q ss_pred HHHHHHhChhhHHHHHHHHhcCC-CcccccccCCCCccccchhHHHHHHHHHHHhhccccccCCCCCCCCCHHHHHHHHH
Q 000134 1998 TLSVLRTHRETLMSVLETFIHDP-LVEWTKSHKSSGVEVENPHAQRAISNIEARLQGSVVGVGAAPSLPLAVEGQARRLI 2076 (2096)
Q Consensus 1998 t~~~LR~~~~~L~~iLe~fl~Dp-l~~W~~~~~~~~~~~~n~~a~~~l~~i~~kL~g~~~~~~~~~~~~lsv~~qV~~LI 2076 (2096)
++.+||+|.+.|++++++|++|| +.+... ....+..+++|+.-... ...+..++..||
T Consensus 212 ~~~~LR~~~~~il~ll~~m~~~~~lp~f~~-------------~~~~i~~l~~r~~l~~s--------e~~a~~~~~~lI 270 (293)
T cd05168 212 GFMALRKHVDRIILLVEIMQSDSKLPCFKA-------------GEFTIQQLRDRFMLNLT--------EEQLEVFVDELI 270 (293)
T ss_pred HHHHHHhchHHHHHHHHHHccCCCCccccC-------------chHHHHHHHHHhCCCCC--------HHHHHHHHHHHH
Confidence 99999999999999999999996 333211 13568888888864321 234678999999
Q ss_pred HHHhCcchhhhcCCccc
Q 000134 2077 AEAVSHKNLGKMYIWWM 2093 (2096)
Q Consensus 2077 ~~Atd~~nL~~My~gW~ 2093 (2096)
++|.+. .-.++|-+|+
T Consensus 271 ~~s~~~-~~t~~yD~~q 286 (293)
T cd05168 271 NQSLDN-WRTRLYDKFQ 286 (293)
T ss_pred HHHHhc-hhHHHHHHHH
Confidence 999986 4667776665
No 18
>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P
Probab=100.00 E-value=8.2e-50 Score=481.86 Aligned_cols=280 Identities=19% Similarity=0.306 Sum_probs=239.4
Q ss_pred CCCCcceEeeec-CceEEecCCCcceEEEEEecC-----CCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCC
Q 000134 1743 SASDLPTISGIA-DEAEILSSLQRPKKIVLLGSD-----GIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRK 1816 (2096)
Q Consensus 1743 ~~~~~v~I~~f~-~~v~V~~S~q~PkrI~i~gsD-----Gk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~ 1816 (2096)
|..+.+.|.++. +++.|++|+++|++|++.|+| |+.|.+++|++||||||+++||++++||.+|+++. .+
T Consensus 57 Pl~P~~~v~~i~~~~~~v~~Sk~~P~~l~f~~~d~~~~~g~~~~~IfK~gDDLRQD~l~lQli~lm~~i~~~~~----ld 132 (366)
T cd05165 57 PLNPSLKLGELRIEKCKVMDSKKKPLWLVFENADPTALSNENVGIIFKNGDDLRQDMLTLQILRIMDSIWKEEG----LD 132 (366)
T ss_pred CCCCceeEeeeecCceEEehhhcCCcEEEEEccCcccccCCceeEEEecCCcccHHHHHHHHHHHHHHHHHhCC----CC
Confidence 445678899985 679999999999999999998 69999999999999999999999999999999864 68
Q ss_pred eeeeecceeeecCCcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHH
Q 000134 1817 LYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFH 1896 (2096)
Q Consensus 1817 L~i~tY~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~ 1896 (2096)
|+++||.|+|+++++|+||||+|+.|+.+|..+.. ... .+. | -.+.++
T Consensus 133 L~l~pY~vl~t~~~~GlIE~V~ns~tl~~I~~~~~----~~~---------------~~~------f-------~~~~l~ 180 (366)
T cd05165 133 LRMLPYGCLSTGDKIGLIEVVRDSTTIANIQQETG----GNA---------------TAA------F-------KKEALL 180 (366)
T ss_pred ceeEEEEEEEecCCceEEEEeCCchhHHHHHHhcc----ccc---------------ccc------c-------CcHHHH
Confidence 99999999999999999999999999999975421 000 000 0 123678
Q ss_pred HHHHhhCCChhHHHHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCC-CC-CCCCCCccc
Q 000134 1897 KWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLL-LE-KPELVPFRL 1974 (2096)
Q Consensus 1897 ~wf~~~f~~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~-l~-~pE~VPFRL 1974 (2096)
+||.+.+|++..|..+|.+|++|+|+||++|||||+||||++|||+++ ||+++|||||++|+.++. ++ .||.|||||
T Consensus 181 ~wl~~~~~~~~~~~~a~~nF~~S~AgysvvtYiLGigDRH~~NILi~~-~G~l~HIDFG~ilg~~~~~~~i~~E~~PFkL 259 (366)
T cd05165 181 HWLKEKNPTEEKLDAAIEEFTLSCAGYCVATFVLGIGDRHNDNIMVKE-TGQLFHIDFGHILGNYKSKFGINRERVPFVL 259 (366)
T ss_pred HHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcceEEcC-CCCEEEEehHHhhccCCccCCCCCCCCCeee
Confidence 999999998899999999999999999999999999999999999995 999999999999988753 55 499999999
Q ss_pred cHHHHHhhcCCCcc------chHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccccccCCCCccccchhHHHHHHHHH
Q 000134 1975 TQNMIDGLGITGYE------GTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSSGVEVENPHAQRAISNIE 2048 (2096)
Q Consensus 1975 T~nmv~~mG~~G~e------G~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~~~~~~~~~~~n~~a~~~l~~i~ 2048 (2096)
|++|+++||+.|.+ |.|+.+|+.++.+||+|.+.|+++++.++..++.++.. ...+..++
T Consensus 260 T~emv~~mg~~~~~~~s~~f~~F~~~c~~a~~~LR~~~~~il~l~~lM~~s~ip~~~~--------------~~~i~~lr 325 (366)
T cd05165 260 TPDFVHVIGRGKKDNTSEHFQRFQDLCEKAYLALRRHGNLLIILFSMMLMSGLPELTS--------------KEDIEYLR 325 (366)
T ss_pred cHHHHHHhcccCCcCCChhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCCCcccCc--------------hhHHHHHH
Confidence 99999999988776 89999999999999999999999999999988888753 13577788
Q ss_pred HHhhccccccCCCCCCCCCHHHHHHHHHHHHhC
Q 000134 2049 ARLQGSVVGVGAAPSLPLAVEGQARRLIAEAVS 2081 (2096)
Q Consensus 2049 ~kL~g~~~~~~~~~~~~lsv~~qV~~LI~~Atd 2081 (2096)
+|+.=-.. .-....++..+|.+|.+
T Consensus 326 ~rf~l~~s--------e~eA~~~f~~~I~~s~~ 350 (366)
T cd05165 326 DTLALGKS--------EEEALKYFLDKFNEALD 350 (366)
T ss_pred HHhCCCCC--------HHHHHHHHHHHHHHHHh
Confidence 88752110 11234568889999876
No 19
>smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain. Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities.
Probab=100.00 E-value=4.8e-50 Score=457.59 Aligned_cols=199 Identities=39% Similarity=0.727 Sum_probs=193.0
Q ss_pred eEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceeeecCCcceeEecCCCccHHHHHHHHHHhcCCCcc
Q 000134 1780 PFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDR 1859 (2096)
Q Consensus 1780 ~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~ 1859 (2096)
.|++|++||+|+|+|+||+++++|.+|++++|+++|++.++||.|+|+++++|+||||+|+.|+.+|
T Consensus 1 ~~~~K~~dDlR~D~~~~ql~~~~n~il~~~~e~~~~~l~~~~y~vip~~~~~GlIE~v~~~~sl~~i------------- 67 (202)
T smart00146 1 AVIFKGGDDLRQDERVLQLLRLMNKILQKDGETRRRDLHLRPYKVIPTGPKSGLIEVVPNSTTLHQI------------- 67 (202)
T ss_pred CeeecCCCcccHHHHHHHHHHHHHHHHHhCcccccCceEeeeeEEEEcCCCcceEEEcCCchhHHHH-------------
Confidence 4899999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHHHHHhhCCChhHHHHHHHHHHHHhhHHHHHhhhccccCCCCCc
Q 000134 1860 QKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGEN 1939 (2096)
Q Consensus 1860 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf~~~f~~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eN 1939 (2096)
+++||.+.|++|.+|+.+|++|++|+|++|++|||+|+|||||+|
T Consensus 68 -----------------------------------l~~~~~~~~~~~~~~~~~~~~F~~SlA~~s~~~YilglgDRh~~N 112 (202)
T smart00146 68 -----------------------------------LYDWFKKKFPDPEDYFEARKNFTRSCAGYSVITYILGLGDRHNDN 112 (202)
T ss_pred -----------------------------------HHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc
Confidence 578999999999999999999999999999999999999999999
Q ss_pred eeeecCCCcEEeeeccccccccCCCCCC-CCCCccccHHHHHhhcCCCccchHHHHHHHHHHHHHhChhhHHHHHHHHhc
Q 000134 1940 ILFDSTTGDCVHVDFSCLFDKGLLLEKP-ELVPFRLTQNMIDGLGITGYEGTFLRVCEITLSVLRTHRETLMSVLETFIH 2018 (2096)
Q Consensus 1940 ILld~~tG~vvHIDF~~~F~kg~~l~~p-E~VPFRLT~nmv~~mG~~G~eG~F~~~~~~t~~~LR~~~~~L~~iLe~fl~ 2018 (2096)
|||+ +||+++|||||++|++++.+..| |.|||||||||+++||+.|++|.|+..|+.++++||++++.|+++|++|++
T Consensus 113 Ili~-~~G~v~hIDfg~~~~~~~~~~~~~e~vPFRLT~~~~~~lg~~~~~g~F~~~~~~~~~~Lr~~~~~i~~~l~~~~~ 191 (202)
T smart00146 113 IMLD-KTGHLFHIDFGFILGNGPKLFGFPERVPFRLTPEMVDVMGDSGYFGLFRSLCERALRALRKNSNLIMSLLELMLY 191 (202)
T ss_pred EEEe-CCCCEEEEechhhhCccccCCCCCCCCCeecCHHHHHHhCCCcccchHHHHHHHHHHHHHcCHHHHHHHHHHHcC
Confidence 9999 89999999999999999988776 999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccc
Q 000134 2019 DPLVEWTKS 2027 (2096)
Q Consensus 2019 Dpl~~W~~~ 2027 (2096)
||+.+|.+.
T Consensus 192 d~l~~~~~~ 200 (202)
T smart00146 192 DGLPDWRSG 200 (202)
T ss_pred CCChhhcCC
Confidence 999999863
No 20
>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=100.00 E-value=7.5e-49 Score=471.69 Aligned_cols=278 Identities=22% Similarity=0.397 Sum_probs=239.4
Q ss_pred CCCCcceEeeec-CceEEecCCCcceEEEEEecC--CCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeee
Q 000134 1743 SASDLPTISGIA-DEAEILSSLQRPKKIVLLGSD--GIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYI 1819 (2096)
Q Consensus 1743 ~~~~~v~I~~f~-~~v~V~~S~q~PkrI~i~gsD--Gk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i 1819 (2096)
|..+.+.|.+|. +++.|++|+++|++|++.++| |+.|.+++|.+||||||+++||++++||++|+++. .+|++
T Consensus 53 Pl~P~~~i~~i~~~~~~v~~S~~~Pl~l~f~~~d~~~~~~~~IfK~gDDLRQD~l~lQli~lmd~i~~~~~----ldl~l 128 (354)
T cd05177 53 PLNPALRVKGIDADACSYFTSNAAPLKISFINANPLAKNISIIFKTGDDLRQDMLVLQIVRVMDNIWLQEG----LDMQM 128 (354)
T ss_pred CCCCCeEEEEEecCccEEehhhcCCCEEEEEecCCCCCeEEEEEeCCCcccHHHHHHHHHHHHHHHHHHcC----CCceE
Confidence 445678999997 589999999999999999999 89999999999999999999999999999999874 68999
Q ss_pred eecceeeecCCcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHHHH
Q 000134 1820 RTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWF 1899 (2096)
Q Consensus 1820 ~tY~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf 1899 (2096)
+||.|+|+++++|+||||+|+.|+++|..++ |.. +.. + .+.+.+||
T Consensus 129 ~pY~vl~t~~~~GlIE~V~ns~tl~~I~~~~----~~~-----------------~~~------~-------~~~l~~~~ 174 (354)
T cd05177 129 IIYRCLSTGKTQGLVQMVPDAVTLAKIHRES----GLI-----------------GPL------K-------ENTIEKWF 174 (354)
T ss_pred EEEEEEecCCCceEEEEeCChHhHHHHHHhh----CCC-----------------ccc------c-------hhhHHHHH
Confidence 9999999999999999999999999997642 110 000 0 12577899
Q ss_pred HhhCCChhHHHHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCCCC--CCCCCCccccHH
Q 000134 1900 LTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLE--KPELVPFRLTQN 1977 (2096)
Q Consensus 1900 ~~~f~~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l~--~pE~VPFRLT~n 1977 (2096)
...++++.+|..+|.+|++|+|+||++|||||+||||++|||++ .||+++|||||++|++++.+. .||+||||||++
T Consensus 175 ~~~~~~~~~~~~a~~nF~~S~AgysvvtYiLGigDRHn~NILi~-~~G~~~HIDFG~ilg~~~~~~~~~~E~~PF~LT~e 253 (354)
T cd05177 175 HMHNKLKEDYDKAVRNFFHSCAGWCVVTFILGVCDRHNDNIMLT-HSGHMFHIDFGKFLGHAQTFGSIKRDRAPFIFTSE 253 (354)
T ss_pred HHhCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCceeEc-CCCCEEEEehHHhcCCCccccCCCcCCCCeeccHH
Confidence 99999999999999999999999999999999999999999999 699999999999999997764 489999999999
Q ss_pred HHHhhcCCCccc----hHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccccccCCCCccccchhHHHHHHHHHHHhhc
Q 000134 1978 MIDGLGITGYEG----TFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSSGVEVENPHAQRAISNIEARLQG 2053 (2096)
Q Consensus 1978 mv~~mG~~G~eG----~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~~~~~~~~~~~n~~a~~~l~~i~~kL~g 2053 (2096)
|+++||..|.++ .|+..|+.++.+||+|.+.|++++++|+++++.+|... +.+..+++|++-
T Consensus 254 mv~~~~~GG~~s~~f~~F~~~c~~a~~~lR~~~~~il~l~~lm~~s~iP~~~~~--------------~~i~~l~~~~~l 319 (354)
T cd05177 254 MEYFITEGGKKPQRFQRFVELCCRAYNIVRKHSQLLLNLLEMMLHAGLPELKDI--------------QDLKYVYNNLRP 319 (354)
T ss_pred HHHHhcCCCCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcccCcc--------------hHHHHHHHHhCC
Confidence 999887667654 69999999999999999999999999999999998531 236777788752
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHhC
Q 000134 2054 SVVGVGAAPSLPLAVEGQARRLIAEAVS 2081 (2096)
Q Consensus 2054 ~~~~~~~~~~~~lsv~~qV~~LI~~Atd 2081 (2096)
-.. .--...++..||++|.+
T Consensus 320 ~~s--------d~eA~~~f~~lI~~s~~ 339 (354)
T cd05177 320 QDT--------DLEATSYFTKKIKESLE 339 (354)
T ss_pred CCC--------HHHHHHHHHHHHHHHHh
Confidence 111 11234578889999886
No 21
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=1.5e-47 Score=460.40 Aligned_cols=280 Identities=20% Similarity=0.322 Sum_probs=236.1
Q ss_pred CCCCcceEeee-cCceEEecCCCcceEEEEEecCC-----CeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCC
Q 000134 1743 SASDLPTISGI-ADEAEILSSLQRPKKIVLLGSDG-----IKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRK 1816 (2096)
Q Consensus 1743 ~~~~~v~I~~f-~~~v~V~~S~q~PkrI~i~gsDG-----k~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~ 1816 (2096)
|..+.+.+.++ .+++.||.|+++|.++++.+.|| ..|.+++|.+||||||+++||++++||++|+++ .++
T Consensus 58 Pl~P~~~~~~i~~~~~~v~~S~~~Pl~l~f~~~d~~~~~~~~~~~IfK~GDDLRQD~l~lQli~lmd~i~~~~----~ld 133 (365)
T cd00894 58 PYDPGLRAGALVIEKCKVMASKKKPLWLEFKCADPTALSNETIGIIFKHGDDLRQDMLILQILRIMESIWETE----SLD 133 (365)
T ss_pred CCCCceEEEEEEcCceEEEcccCCceEEEEECCCCCccCCCceeEEEeCCCcccHHHHHHHHHHHHHHHHHHc----CCC
Confidence 33567889998 58899999999999999999887 579999999999999999999999999999875 479
Q ss_pred eeeeecceeeecCCcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHH
Q 000134 1817 LYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFH 1896 (2096)
Q Consensus 1817 L~i~tY~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~ 1896 (2096)
|++++|.|+|+++++|+||||+|+.|+++|..+.....| .++ .+.++
T Consensus 134 L~l~pY~vi~tg~~~GlIE~V~ns~tl~~I~~~~~~~~~--------------------------~~k-------~~~l~ 180 (365)
T cd00894 134 LCLLPYGCISTGDKIGMIEIVKDATTIAKIQQSTVGNTG--------------------------AFK-------DEVLS 180 (365)
T ss_pred eEEEEEEEEEecCCceEEEEcCCchhHHHHHHhcccccc--------------------------ccc-------chhHH
Confidence 999999999999999999999999999999653211000 011 13678
Q ss_pred HHHHhhCCChhHHHHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCCC-C-CCCCCCccc
Q 000134 1897 KWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLL-E-KPELVPFRL 1974 (2096)
Q Consensus 1897 ~wf~~~f~~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l-~-~pE~VPFRL 1974 (2096)
+||.+.+|++..|..++.+|++|+|+||++|||||+||||++||||+ .+|+++|||||++|+.++.+ . .||+|||||
T Consensus 181 ~~l~~~~~~~~~~~~a~~nFi~S~AgYsV~tYiLGIgDRHndNImi~-~~G~lfHIDFG~ilg~~~~~~gi~~E~~PFkL 259 (365)
T cd00894 181 HWLKEKCPIEEKFQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMIT-ETGNLFHIDFGHILGNYKSFLGINKERVPFVL 259 (365)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHhHHHHHHHHhccccCccccceeEc-CCCCEEEEeeHHhhCCCCccCCCCCCCCCeee
Confidence 99999999999999999999999999999999999999999999999 59999999999999988764 3 499999999
Q ss_pred cHHHHHhhcCCCcc-----chHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccccccCCCCccccchhHHHHHHHHHH
Q 000134 1975 TQNMIDGLGITGYE-----GTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSSGVEVENPHAQRAISNIEA 2049 (2096)
Q Consensus 1975 T~nmv~~mG~~G~e-----G~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~~~~~~~~~~~n~~a~~~l~~i~~ 2049 (2096)
|++|+++||+.|.+ +.|+..|+.++.+||+|.+.|+++++.++..-+.+... .+.+..+++
T Consensus 260 T~e~v~vmg~~gg~~s~~f~~F~~~c~~a~~~LRk~~~lil~L~~lM~~sgip~l~~--------------~~~i~~l~~ 325 (365)
T cd00894 260 TPDFLFVMGTSGKKTSLHFQKFQDVCVKAYLALRHHTNLLIILFSMMLMTGMPQLTS--------------KEDIEYIRD 325 (365)
T ss_pred cHHHHHHhCccCCcCChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcccCc--------------chHHHHHHH
Confidence 99999999988765 47999999999999999999999999999765555321 134777888
Q ss_pred HhhccccccCCCCCCCCCHHHHHHHHHHHHhCc
Q 000134 2050 RLQGSVVGVGAAPSLPLAVEGQARRLIAEAVSH 2082 (2096)
Q Consensus 2050 kL~g~~~~~~~~~~~~lsv~~qV~~LI~~Atd~ 2082 (2096)
|++--.. .-....++..+|++|.+.
T Consensus 326 ~~~l~~s--------e~eA~~~f~~~I~~s~~~ 350 (365)
T cd00894 326 ALTVGKS--------EEDAKKHFLDQIEVCRDK 350 (365)
T ss_pred HhCCCCC--------HHHHHHHHHHHHHHHHhc
Confidence 8752111 112345688899998754
No 22
>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de
Probab=100.00 E-value=2.8e-47 Score=459.35 Aligned_cols=277 Identities=22% Similarity=0.326 Sum_probs=228.8
Q ss_pred CCCCcceEeeec-CceEEecCCCcceEEEEEec--CCCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeee
Q 000134 1743 SASDLPTISGIA-DEAEILSSLQRPKKIVLLGS--DGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYI 1819 (2096)
Q Consensus 1743 ~~~~~v~I~~f~-~~v~V~~S~q~PkrI~i~gs--DGk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i 1819 (2096)
|..+.+.|.++. +++.||+|+++|++|++.+. +|..|.+++|++||||||+++||++++||++|++. .++|++
T Consensus 56 PldP~~~v~~i~~~~~~v~~S~~~Pl~l~f~~~~~~g~~~~~IfK~gDDLRQD~l~lQli~lm~~i~k~~----~ldL~l 131 (362)
T cd05173 56 PLNPSIILSELNVEKCKYMDSKMKPLWIVYNNKLFGGDSLGIIFKNGDDLRQDMLTLQILRLMDTLWKEA----GLDLRI 131 (362)
T ss_pred CCCCceEEEEEEcCceEEecccCCCeEEEEeecCCCCCEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHC----CCCeee
Confidence 445678999996 66999999999999999875 79999999999999999999999999999999986 478999
Q ss_pred eecceeeecCCcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHHHH
Q 000134 1820 RTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWF 1899 (2096)
Q Consensus 1820 ~tY~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf 1899 (2096)
++|.|+|+++++|+||||+|+.|+.+|..+.. ... . .. .+ -.+.+++||
T Consensus 132 ~pY~vi~t~~~~GlIE~V~ns~tl~~I~~~~~----~~~---~-----------~~------~f-------~~~~l~~~l 180 (362)
T cd05173 132 VPYGCLATGDRSGLIEVVSSAETIADIQLNSS----NVA---A-----------AA------AF-------NKDALLNWL 180 (362)
T ss_pred EEEEEEEccCCceEEEEeCCchhHHHHHHhcc----ccc---h-----------hc------cc-------ChhHHHHHH
Confidence 99999999999999999999999999964311 000 0 00 00 013678899
Q ss_pred HhhCCChhHHHHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeecccccccc--CCCCCCCCCCccccHH
Q 000134 1900 LTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKG--LLLEKPELVPFRLTQN 1977 (2096)
Q Consensus 1900 ~~~f~~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg--~~l~~pE~VPFRLT~n 1977 (2096)
.+.+++ ..|..++.+|++|+|+||++|||||+||||++||||+ .+|+++|||||++|+.. .....||+||||||++
T Consensus 181 ~~~~~~-~~~~~a~~nF~~S~AgYsvvtYILGIGDRHn~NILi~-~~G~l~HIDFG~ilg~~~~~~~~~~E~vPFkLT~e 258 (362)
T cd05173 181 KEYNSG-DDLERAIEEFTLSCAGYCVATYVLGIGDRHSDNIMVR-KNGQLFHIDFGHILGNFKSKFGIKRERVPFILTYD 258 (362)
T ss_pred HhcCCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCceEEC-CCCCEEEEehHHhhccCCcccCCCCCCCCeeecHH
Confidence 886554 4677799999999999999999999999999999999 69999999999999863 3345699999999999
Q ss_pred HHHhhc--CCC---ccchHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccccccCCCCccccchhHHHHHHHHHHHhh
Q 000134 1978 MIDGLG--ITG---YEGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSSGVEVENPHAQRAISNIEARLQ 2052 (2096)
Q Consensus 1978 mv~~mG--~~G---~eG~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~~~~~~~~~~~n~~a~~~l~~i~~kL~ 2052 (2096)
|+++|| ..| .+|.|+..|+.++.+||+|.+.|+++++.++..++.++.. .+.+..+++|+.
T Consensus 259 mv~vm~~G~~g~s~~~~~F~~~c~~a~~~LRk~~~lil~l~~lM~~s~ip~~~~--------------~~~i~~l~~r~~ 324 (362)
T cd05173 259 FIHVIQQGKTGNTEKFGRFRQYCEDAYLILRKNGNLFITLFALMLTAGLPELTS--------------VKDIQYLKDSLA 324 (362)
T ss_pred HHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccccc--------------hhHHHHHHHhcC
Confidence 999995 333 4789999999999999999999999999999988877643 135677777774
Q ss_pred ccccccCCCCCCCCCHH---HHHHHHHHHHhC
Q 000134 2053 GSVVGVGAAPSLPLAVE---GQARRLIAEAVS 2081 (2096)
Q Consensus 2053 g~~~~~~~~~~~~lsv~---~qV~~LI~~Atd 2081 (2096)
= .+|-+ .+...+|.+|.+
T Consensus 325 l-----------~~se~eA~~~f~~~i~~s~~ 345 (362)
T cd05173 325 L-----------GKSEEEALKQFRQKFDEALR 345 (362)
T ss_pred C-----------CCCHHHHHHHHHHHHHHHHH
Confidence 2 22322 356677777764
No 23
>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=5.4e-47 Score=455.04 Aligned_cols=277 Identities=19% Similarity=0.296 Sum_probs=226.2
Q ss_pred CCCCcceEeee-cCceEEecCCCcceEEEEEecC--CCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeee
Q 000134 1743 SASDLPTISGI-ADEAEILSSLQRPKKIVLLGSD--GIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYI 1819 (2096)
Q Consensus 1743 ~~~~~v~I~~f-~~~v~V~~S~q~PkrI~i~gsD--Gk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i 1819 (2096)
|..+.+.+.++ .+++.|++|+++|++|++.|.| |+.|.+++|++||||||+++||++++||.+|+++. .+|++
T Consensus 56 Pl~p~~~~~~~~~~~~~v~~Sk~~Pl~l~f~~~~~~g~~~~~IfK~gDDLRQD~l~~Qli~lmd~i~k~~~----ldL~l 131 (361)
T cd05174 56 PLSPSIILCEVCVDQCTFMDSKMKPLWIMYKNEEAGGGSVGIIFKNGDDLRQDMLTLQMIQLMDVLWKQEG----LDLRM 131 (361)
T ss_pred CCCCceEEEEEEcCcEEEEeccCCceEEEEeecCCCCCEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHCC----CCeee
Confidence 33456677776 5899999999999999999977 99999999999999999999999999999998864 79999
Q ss_pred eecceeeecCCcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHHHH
Q 000134 1820 RTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWF 1899 (2096)
Q Consensus 1820 ~tY~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf 1899 (2096)
++|.|+|+++++|+||||+|+.|+.+|..+.... + . .+ .+. .+.+.+||
T Consensus 132 ~pY~vi~tg~~~GlIE~V~ns~Tl~~I~~~~~~~-~------~-----------~~------~f~-------~~~l~~~l 180 (361)
T cd05174 132 TPYGCLSTGDKTGLIEVVKNSDTIANIQLNKSNM-A------A-----------TA------AFN-------KDALLNWL 180 (361)
T ss_pred EEEEEEEecCCceEEEEeCCchhHHHHHHhhccc-c------h-----------hc------ccc-------chHHHHHH
Confidence 9999999999999999999999999996532100 0 0 00 000 14678999
Q ss_pred HhhCCChhHHHHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccC--CCCCCCCCCccccHH
Q 000134 1900 LTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGL--LLEKPELVPFRLTQN 1977 (2096)
Q Consensus 1900 ~~~f~~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~--~l~~pE~VPFRLT~n 1977 (2096)
.+.+|+ ..|..++.+|++|+|+||++||||||||||++|||++ .+|+++|||||++|+..+ ....||+||||||++
T Consensus 181 ~~~~~~-~~~~~A~~nF~~S~AgysVvtYiLGIGDRHn~NILi~-~~G~l~HIDFG~ilg~~~~~~~~~~E~vPFkLT~e 258 (361)
T cd05174 181 KSKNPG-DALDQAIEEFTLSCAGYCVATYVLGIGDRHSDNIMIR-ESGQLFHIDFGHFLGNFKTKFGINRERVPFILTYD 258 (361)
T ss_pred HhcCCc-HHHHHHHHHHHHHHHHHHHHHHHhcccCcCccceeEc-CCCCEEEEehHHhhcCCcccCCCCCCCCCeeccHH
Confidence 998876 3566789999999999999999999999999999998 599999999999998753 334699999999999
Q ss_pred HHHhhcCCCc-----cchHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccccccCCCCccccchhHHHHHHHHHHHhh
Q 000134 1978 MIDGLGITGY-----EGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSSGVEVENPHAQRAISNIEARLQ 2052 (2096)
Q Consensus 1978 mv~~mG~~G~-----eG~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~~~~~~~~~~~n~~a~~~l~~i~~kL~ 2052 (2096)
|+++||..|. .|.|+..|+.++.+||+|.+.|+++++.++...+.+... .+.+..+++|+.
T Consensus 259 ~v~vmg~G~~~~s~~f~~F~~~c~~a~~~LRk~~~~il~l~~lM~~sgip~~~~--------------~~~i~~l~~~~~ 324 (361)
T cd05174 259 FVHVIQQGKTNNSEKFERFRGYCEQAYKILRRHGTLFLHLFALMKAAGLPELNC--------------SKDIQYLKDSLA 324 (361)
T ss_pred HHHHHccCCCCCCchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCCccCc--------------hhHHHHHHHHhC
Confidence 9999974322 369999999999999999999999999998665554321 245778888875
Q ss_pred ccccccCCCCCCCCCHH---HHHHHHHHHHhC
Q 000134 2053 GSVVGVGAAPSLPLAVE---GQARRLIAEAVS 2081 (2096)
Q Consensus 2053 g~~~~~~~~~~~~lsv~---~qV~~LI~~Atd 2081 (2096)
= .+|-+ .+...+|.+|..
T Consensus 325 l-----------~~se~ea~~~f~~~i~~s~~ 345 (361)
T cd05174 325 L-----------GKTEEEALKHFRVKFNEALR 345 (361)
T ss_pred C-----------CCCHHHHHHHHHHHHHHHHh
Confidence 2 23323 345567777763
No 24
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=100.00 E-value=2.2e-47 Score=450.59 Aligned_cols=257 Identities=22% Similarity=0.381 Sum_probs=219.7
Q ss_pred eEEecCCC-cceEEEEEecCC--CeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceeeecCCcce
Q 000134 1757 AEILSSLQ-RPKKIVLLGSDG--IKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGM 1833 (2096)
Q Consensus 1757 v~V~~S~q-~PkrI~i~gsDG--k~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~~~GL 1833 (2096)
.++++|.. .|-.+.+.-.|| ..|.|++|++||||||+++||++++||.+|++. +++|+++||.|+|+++++|+
T Consensus 8 ~k~~~~~~~~P~~~~~~~~~~~~~~~~~i~K~gDDLRqD~l~~Ql~~l~~~i~~~~----~l~l~l~~Y~vi~~s~~~Gl 83 (289)
T cd00893 8 PKILQSALKIPYLELKKLTDSTLINSEFIVKCGDDLRQDILATQIITELQKIFELM----FLDLWLNPYLVLPVSKTGGI 83 (289)
T ss_pred chHHHHhhcCchhhccCccCCCCeeEEEEEECCCcccHHHHHHHHHHHHHHHHHHc----CCCceeEEEEEEECCCCcee
Confidence 45566654 566666655555 599999999999999999999999999999876 57999999999999999999
Q ss_pred eEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHHHHHhhCC--ChhHHHH
Q 000134 1834 VEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFS--EPAAWFR 1911 (2096)
Q Consensus 1834 IEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf~~~f~--~p~~w~~ 1911 (2096)
||||+|+.|+++|..++ .+.+++||.+.|+ ++.+|+.
T Consensus 84 IE~V~ns~tl~~i~~~~-----------------------------------------~~~l~~~~~~~~~~~~~~~~~~ 122 (289)
T cd00893 84 IEFIPNSISIHEIKKQQ-----------------------------------------INSLYDYFLELYGSYTTEAFLQ 122 (289)
T ss_pred EEEeCCchhHHHHHHhc-----------------------------------------cccHHHHHHHHcCCCCcHHHHH
Confidence 99999999999986431 0125567778876 4678999
Q ss_pred HHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCCC-CCCCCCCccccHHHHHhhcCCCcc--
Q 000134 1912 ARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLL-EKPELVPFRLTQNMIDGLGITGYE-- 1988 (2096)
Q Consensus 1912 ~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l-~~pE~VPFRLT~nmv~~mG~~G~e-- 1988 (2096)
+|.+|++|+|+|||+|||||+||||++|||||+ +|+++|||||++|++++.. ..||.||||||++|+++||+.|.+
T Consensus 123 a~~nF~~SlA~ySvv~YiLgigDRH~~NILid~-~G~liHIDFG~ilg~~p~~~~~~E~~PFrLT~emv~~mGg~~s~~f 201 (289)
T cd00893 123 ARYNFIESMAGYSLLCYLLQIKDRHNGNILLDS-DGHIIHIDFGFILDSSPGNNLGFEPAAFKFTKEMVDFMGGKKSDDF 201 (289)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCceEECC-CCCEEEEehHHhhCcCCcCCCCCCCCCeeecHHHHHHhCCCCChhH
Confidence 999999999999999999999999999999996 9999999999999998765 458999999999999999999987
Q ss_pred chHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccccccCCCCccccchhHHHHHHHHHHHhhccccccCCCCCCCCCH
Q 000134 1989 GTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSSGVEVENPHAQRAISNIEARLQGSVVGVGAAPSLPLAV 2068 (2096)
Q Consensus 1989 G~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~~~~~~~~~~~n~~a~~~l~~i~~kL~g~~~~~~~~~~~~lsv 2068 (2096)
|.|+..|+.++.+||+|.+.|++++++|+++|+.+|.. +.+..+++|++-... +-..
T Consensus 202 ~~F~~~c~~~~~~lR~~~~~il~ll~~m~~~~lp~~~~---------------~~i~~l~~r~~l~~s--------~~~a 258 (289)
T cd00893 202 KKFRYLCLRGFIAVRKHMDLVISLVYLLIFSGLPCFRG---------------STIKKLKERLCLNMS--------EKEA 258 (289)
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHccCCCcccCH---------------HHHHHHHHHcCCCCC--------HHHH
Confidence 79999999999999999999999999999999998841 356778888753211 2235
Q ss_pred HHHHHHHHHHHhCc
Q 000134 2069 EGQARRLIAEAVSH 2082 (2096)
Q Consensus 2069 ~~qV~~LI~~Atd~ 2082 (2096)
...+..+|++|.+.
T Consensus 259 ~~~~~~lI~~s~~~ 272 (289)
T cd00893 259 INTVMKKIDSSYNS 272 (289)
T ss_pred HHHHHHHHHHHHhh
Confidence 56788999999874
No 25
>PF00454 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kinase; InterPro: IPR000403 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) [] is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The three products of PI3-kinase - PI-3-P, PI-3,4-P(2) and PI-3,4,5-P(3) function as secondary messengers in cell signalling. Phosphatidylinositol 4-kinase (PI4-kinase) (2.7.1.67 from EC) [] is an enzyme that acts on phosphatidylinositol (PI) in the first committed step in the production of the secondary messenger inositol-1'4'5'-trisphosphate. This domain is also present in a wide range of protein kinases, involved in diverse cellular functions, such as control of cell growth, regulation of cell cycle progression, a DNA damage checkpoint, recombination, and maintenance of telomere length. Despite significant homology to lipid kinases, no lipid kinase activity has been demonstrated for any of the PIK-related kinases []. The PI3- and PI4-kinases share a well conserved domain at their C-terminal section; this domain seems to be distantly related to the catalytic domain of protein kinases [, ]. The catalytic domain of PI3K has the typical bilobal structure that is seen in other ATP-dependent kinases, with a small N-terminal lobe and a large C-terminal lobe. The core of this domain is the most conserved region of the PI3Ks. The ATP cofactor binds in the crevice formed by the N-and C-terminal lobes, a loop between two strands provides a hydrophobic pocket for binding of the adenine moiety, and a lysine residue interacts with the alpha-phosphate. In contrast to protein kinases, the PI3K loop which interacts with the phosphates of the ATP and is known as the glycine-rich or P-loop, contains no glycine residues. Instead, contact with the ATP -phosphate is maintained through the side chain of a conserved serine residue.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A 2WXH_A 2WXK_A 2WXG_A 2X38_A 2WXF_A ....
Probab=100.00 E-value=2.3e-47 Score=447.31 Aligned_cols=231 Identities=40% Similarity=0.797 Sum_probs=181.0
Q ss_pred eeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceeeecCCcceeEecCCCccHHHHHHHHHHhcCCC
Q 000134 1778 KRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKF 1857 (2096)
Q Consensus 1778 ~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~ 1857 (2096)
.|+||+|++||+|||+|+||+++++|.+|.+++++++ +++|.|+|+++++||||||+++.|+.+|+.+++...+..
T Consensus 1 ~y~~l~K~~dDlr~D~~~~ql~~~~n~~l~~~~~~~~----~~~Y~vipls~~~Glie~v~~~~tl~~i~~~~~~~~~~~ 76 (235)
T PF00454_consen 1 EYSFLVKGGDDLRQDERVMQLFRLMNRILKKEGETRE----IRTYRVIPLSPNCGLIEWVPNTITLQEIYKTYCVRIGHS 76 (235)
T ss_dssp -EEEEEEESS-CHHHHHHHHHHHHHHHHHHHTT-------------EEEEETTEEEEE--TTEEEHHHHHHHSTTSSTTT
T ss_pred CceEEEECCchhhchhHHHHHHHHHHHHHhcCCCCce----EEEeEEEecCCCCceeEEeccccchhHhhcccccccccc
Confidence 4999999999999999999999999999999988665 999999999999999999999999999998876554432
Q ss_pred ccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHHHHHhhCCChhHHHHHHHHHHHHhhHHHHHhhhccccCCCC
Q 000134 1858 DRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHG 1937 (2096)
Q Consensus 1858 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf~~~f~~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~ 1937 (2096)
.. .+. ...... ..........++.+.+||...++++++|+.+|++|++|+|++|+++||+|+|||||
T Consensus 77 ~~---~~~-~~~~~~---------~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~r~~f~~sla~~si~~yilg~gDRh~ 143 (235)
T PF00454_consen 77 ND---NPS-RKYKAK---------LFEKQSSKVPKDGLRQYFLKSFPSAEEWFEARKNFTRSLAAYSILDYILGLGDRHP 143 (235)
T ss_dssp CS---C----------------------------TTHHHHHHHHHSCTTHHHHHHHHHHHHHHHHHHHHHHHHT-CS--T
T ss_pred cc---ccc-cccccc---------cccccccccccchHHHHHHhcCCChhhhHhhhHhhHHHHHHHhhceEEEeecCCCc
Confidence 21 110 000000 01222233445699999999999999999999999999999999999999999999
Q ss_pred CceeeecCCCcEEeeeccccccccCCCCCCCCCCccccHHHHHhh----cCCCccchHHHHHHHHHHHHHhChhhHHHHH
Q 000134 1938 ENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMIDGL----GITGYEGTFLRVCEITLSVLRTHRETLMSVL 2013 (2096)
Q Consensus 1938 eNILld~~tG~vvHIDF~~~F~kg~~l~~pE~VPFRLT~nmv~~m----G~~G~eG~F~~~~~~t~~~LR~~~~~L~~iL 2013 (2096)
+|||++..||+++|||||++|+ ++.+++||.||||||+||+++| |+.|.+|.|+.+|+.++++||++++.|+++|
T Consensus 144 ~Nili~~~~g~~~hIDfg~~f~-~~~~~~~e~vPFrLT~~~~~~~~~~l~~~~~~g~f~~~~~~~~~~lr~~~~~l~~ll 222 (235)
T PF00454_consen 144 GNILIDKKTGELIHIDFGFIFG-GKHLPVPETVPFRLTRNMVNAMGGYLGPSGVEGLFRSSCEAILRALRRNKDLLLSLL 222 (235)
T ss_dssp TTEEE-ETTSEEEE--HSSCTT-HHHGSSSS--SSTTHHHHHHHTTTSSSTSHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred hhheeccccceeeeEEeHHhhh-ccccCCCCCCCeEeCHHHHHHHhccCCCchhHhHHHHHHHHHHHHHhcChHHHHHHH
Confidence 9999999999999999999999 8888999999999999999999 9999999999999999999999999999999
Q ss_pred HHHhcCCCccccc
Q 000134 2014 ETFIHDPLVEWTK 2026 (2096)
Q Consensus 2014 e~fl~Dpl~~W~~ 2026 (2096)
++|++||+++|.+
T Consensus 223 ~~~~~d~l~~w~~ 235 (235)
T PF00454_consen 223 ELFLRDPLIDWRK 235 (235)
T ss_dssp HHTTTSCSTTSS-
T ss_pred HHHHhCCCCCCCC
Confidence 9999999999964
No 26
>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=100.00 E-value=4.5e-46 Score=445.13 Aligned_cols=278 Identities=22% Similarity=0.334 Sum_probs=232.0
Q ss_pred CCCcceEeeec-CceEEecCCCcceEEEEEecC--CCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeee
Q 000134 1744 ASDLPTISGIA-DEAEILSSLQRPKKIVLLGSD--GIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIR 1820 (2096)
Q Consensus 1744 ~~~~v~I~~f~-~~v~V~~S~q~PkrI~i~gsD--Gk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~ 1820 (2096)
..+.+.+.++. +.+.|++|+++|++|++.++| |+.|.+++|.+||||||+++||++++||++|++.. .+|+++
T Consensus 53 l~p~~~~~~~~~~~c~v~~S~~~Pl~l~f~~~d~~g~~~~~ifK~gDDLRQD~l~lQli~lmd~i~~~~~----ldL~l~ 128 (353)
T cd05176 53 LSPSLVAKELNIKVCSFFSSNAVPLKIALVNADPLGEEINVMFKVGEDLRQDMLALQMIKIMDKIWLQEG----LDLRMV 128 (353)
T ss_pred CCcceeEccEehheeEEecccCCceEEEEEccCCCCCEEEEEEeCCCCccHHHHHHHHHHHHHHHHHHCC----CCeEEE
Confidence 34556777874 779999999999999999999 99999999999999999999999999999998764 589999
Q ss_pred ecceeeecCCcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHHHHH
Q 000134 1821 TFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFL 1900 (2096)
Q Consensus 1821 tY~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf~ 1900 (2096)
+|.|+|+++++|+||||||+.|+++|..++ ...|. ++ ...+.+|+.
T Consensus 129 pY~vl~tg~~~GlIE~V~ns~tl~~I~~~~-~~~~~--------------------------~~-------~~~l~~~l~ 174 (353)
T cd05176 129 IFKCLSTGKDRGMVELVPASETLRKIQVEY-GVTGS--------------------------FK-------DKPLAEWLR 174 (353)
T ss_pred EEEEEEcCCCceEEEEeCCcHhHHHHHHHh-CcCCc--------------------------cc-------cchHHHHHH
Confidence 999999999999999999999999986532 11010 00 124678999
Q ss_pred hhCCChhHHHHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCCCC--CCCCCCccccHHH
Q 000134 1901 TTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLE--KPELVPFRLTQNM 1978 (2096)
Q Consensus 1901 ~~f~~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l~--~pE~VPFRLT~nm 1978 (2096)
..+|++.+|..+|.+|++|+|+||++|||||+||||++||||+ .+|+++|||||++|+.++.+. .||.||||||++|
T Consensus 175 ~~~~~~~~~~~a~~nFi~S~AgYsv~tYiLGIgDRHn~NILi~-~~Ghl~HIDFG~ilg~~~~~g~~~~e~~PFkLT~em 253 (353)
T cd05176 175 KYNPAEEEYEKASENFIYSCAGCCVATYVLGICDRHNDNIMLR-STGHMFHIDFGKFLGHAQMFGSFKRDRAPFVLTSDM 253 (353)
T ss_pred HhCCChHHHHHHHHHHHHHHHHHHHHhhhccccCcCCcceEEc-CCCCEEEEeeHHhcCCCccccCCCCCCCCeeecHHH
Confidence 9899999999999999999999999999999999999999998 799999999999999887653 5899999999999
Q ss_pred HHhhcCCCc----cchHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccccccCCCCccccchhHHHHHHHHHHHhhcc
Q 000134 1979 IDGLGITGY----EGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSSGVEVENPHAQRAISNIEARLQGS 2054 (2096)
Q Consensus 1979 v~~mG~~G~----eG~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~~~~~~~~~~~n~~a~~~l~~i~~kL~g~ 2054 (2096)
+++||..+. ...|+..|+.++.+||+|.+.|+++++.++.-.+.+... ...+..+++|++--
T Consensus 254 v~~mgG~~~~s~~f~~F~~lc~~af~~LRk~~~~il~L~~lM~~s~iP~~~~--------------~~~i~~l~~r~~l~ 319 (353)
T cd05176 254 AYVINGGEKPTIRFQLFVDLCCQAYNLIRKHSNLFLNLLSLMTQSGLPELTG--------------VQDLKYVYDALQPQ 319 (353)
T ss_pred HHHhcCCCCcchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCcccCC--------------chHHHHHHHHhCCC
Confidence 999984322 236999999999999999999999999999777766432 12467788887521
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHhCc
Q 000134 2055 VVGVGAAPSLPLAVEGQARRLIAEAVSH 2082 (2096)
Q Consensus 2055 ~~~~~~~~~~~lsv~~qV~~LI~~Atd~ 2082 (2096)
.. .-....++..||++|.+.
T Consensus 320 ~s--------d~ea~~~f~~lI~~s~~s 339 (353)
T cd05176 320 TT--------DAEATIFFTRLIESSLGS 339 (353)
T ss_pred CC--------HHHHHHHHHHHHHHHHhc
Confidence 11 112446788999988663
No 27
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=100.00 E-value=3.9e-46 Score=442.72 Aligned_cols=279 Identities=22% Similarity=0.346 Sum_probs=235.5
Q ss_pred CCcceEeeec-CceEEecCC-CcceEEEEEecCCC-------------eeeEEecCCCcchhhHHHHHHHHHHHHHhccC
Q 000134 1745 SDLPTISGIA-DEAEILSSL-QRPKKIVLLGSDGI-------------KRPFLCKPKDDLRKDSRMMEFTAMINRLLSKY 1809 (2096)
Q Consensus 1745 ~~~v~I~~f~-~~v~V~~S~-q~PkrI~i~gsDGk-------------~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~ 1809 (2096)
.+...+.++. ++..+|.|+ ..|-++++...|+. .+.+++|.+||||||+++||++++||++|++.
T Consensus 5 ~P~~~v~~i~~~~~~~~~S~ak~P~~l~F~~~~~~~~~~~~~~~~~~~~~~~IfK~gDDLRQD~l~~Qli~lm~~i~~~~ 84 (311)
T cd05167 5 NPDYVIVGIDYKSGTPLQSHAKAPILVTFKVKDRGGDELEEVDDGKVSWQACIFKVGDDCRQDMLALQLISLFKNIFQSA 84 (311)
T ss_pred CCceEEEEEEccccEEeccCCCCceEEEEEecCCCccccccccccccceEEEEEeCCCCccHHHHHHHHHHHHHHHHHHC
Confidence 4567888885 779999998 57999999998764 49999999999999999999999999999875
Q ss_pred CcccCCCeeeeecceeeecCCcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcC
Q 000134 1810 PESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILP 1889 (2096)
Q Consensus 1810 ~etrrR~L~i~tY~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 1889 (2096)
+++|++++|.|+|+++++|+||||+|+.|+++|...
T Consensus 85 ----~ldl~l~~Y~vi~t~~~~GlIE~V~ns~s~~~i~~~---------------------------------------- 120 (311)
T cd05167 85 ----GLDLYLFPYRVVATGPGCGVIEVVPNSKSRDQIGRT---------------------------------------- 120 (311)
T ss_pred ----CCCeEeEEEeEEecCCCceEEEEeCCcHHHHHHHhh----------------------------------------
Confidence 479999999999999999999999999999877321
Q ss_pred CCchHHHHHHHhhCCCh--hHHHHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCCC-CC
Q 000134 1890 MFPPVFHKWFLTTFSEP--AAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLL-EK 1966 (2096)
Q Consensus 1890 ~~~pvl~~wf~~~f~~p--~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l-~~ 1966 (2096)
....+.+||.+.|+++ .+|..+|.+|++|+|+|||+|||||+||||++|||||. +|+++|||||++|++++.. ..
T Consensus 121 -~~~~l~~~f~~~~~~~~~~~~~~a~~nF~~S~Agysv~tYiLgigDRHn~NILid~-~G~l~HIDFG~il~~~p~~~~~ 198 (311)
T cd05167 121 -TDNGLYEYFTSKYGDESSLAFQKARENFIRSMAAYSLISYLLQIKDRHNGNIMIDD-DGHIIHIDFGFIFEISPGGNLK 198 (311)
T ss_pred -cccHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccccCccceEEcC-CCCEEEEeeHHhhccCCCCCCC
Confidence 0124778999988654 78999999999999999999999999999999999996 9999999999999987653 45
Q ss_pred CCCCCccccHHHHHhhcCCCccc---hHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccccccCCCCccccchhHHHH
Q 000134 1967 PELVPFRLTQNMIDGLGITGYEG---TFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSSGVEVENPHAQRA 2043 (2096)
Q Consensus 1967 pE~VPFRLT~nmv~~mG~~G~eG---~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~~~~~~~~~~~n~~a~~~ 2043 (2096)
+|+||||||++|+++||+.|..| .|+..|..++.+||+|.+.|+++++.|+...+.++. .+.
T Consensus 199 ~E~~PFkLT~emv~~mGg~~~s~~f~~F~~~~~~~~~~lR~~~~~il~l~~lm~~s~lp~~~---------------~~~ 263 (311)
T cd05167 199 FESAPFKLTKEMVQIMGGSMEATPFKWFVELCVRAFLAVRPYMDEIVSLVELMLDSGLPCFR---------------GDT 263 (311)
T ss_pred cCCCCEeecHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCchhhh---------------HHH
Confidence 89999999999999999988666 677788889999999999999999999987776643 246
Q ss_pred HHHHHHHhhccccccCCCCCCCCCHHHHHHHHHHHHhCcchhhhcCCccc
Q 000134 2044 ISNIEARLQGSVVGVGAAPSLPLAVEGQARRLIAEAVSHKNLGKMYIWWM 2093 (2096)
Q Consensus 2044 l~~i~~kL~g~~~~~~~~~~~~lsv~~qV~~LI~~Atd~~nL~~My~gW~ 2093 (2096)
+..+++|+.-... .-....++..||++|.+.. -.++|-.|+
T Consensus 264 i~~l~~rf~l~~s--------e~~a~~~~~~lI~~s~~~~-~t~~yD~~q 304 (311)
T cd05167 264 IKNLRQRFAPEKS--------EREAAEFMLSLIAESYEKF-RTKGYDQFQ 304 (311)
T ss_pred HHHHHHHhCCCCC--------HHHHHHHHHHHHHHHHhch-hHHHHHHHH
Confidence 7788888753211 2235678999999999874 345555443
No 28
>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not
Probab=100.00 E-value=3.5e-43 Score=420.50 Aligned_cols=279 Identities=20% Similarity=0.331 Sum_probs=233.7
Q ss_pred CCCCcceEeeec-CceEEecCCCcceEEEEEecC--CCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeee
Q 000134 1743 SASDLPTISGIA-DEAEILSSLQRPKKIVLLGSD--GIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYI 1819 (2096)
Q Consensus 1743 ~~~~~v~I~~f~-~~v~V~~S~q~PkrI~i~gsD--Gk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i 1819 (2096)
|..+.+++.++. ++..|+.|+.+|.+|++.+.| |..|.+++|.+||||||+.++|++++||++|+++. .+|++
T Consensus 53 PldP~~~v~~i~~~~~~v~~S~~~Pl~l~f~~~d~~~~~~~~IfK~GDDLRQD~l~lQli~lmd~i~~~~~----ldl~l 128 (354)
T cd00895 53 PLSPSLLVKGIVPRDCSYFNSNAVPLKLSFQNVDPLGENIRVIFKCGDDLRQDMLTLQMIRIMNKIWVQEG----LDMRM 128 (354)
T ss_pred CCCCCeEEEEEEcCceEEecccCCCeEEEEEecCCCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHHHcC----CCceE
Confidence 345678899985 789999999999999999999 89999999999999999999999999999999974 68999
Q ss_pred eecceeeecCCcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHHHH
Q 000134 1820 RTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWF 1899 (2096)
Q Consensus 1820 ~tY~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf 1899 (2096)
++|.|+|+++++|+||||||+.|+++|..+. |.... ++ ...+.+||
T Consensus 129 ~pY~vl~tg~~~G~IE~V~ns~tl~~I~~~~----g~~g~-----------------------~~-------~~~l~~~l 174 (354)
T cd00895 129 VIFRCFSTGRGRGMVEMIPNAETLRKIQVEH----GVTGS-----------------------FK-------DRPLADWL 174 (354)
T ss_pred EEEEEEecCCCceEEEEeCChhhHHHHHHHh----CcCcc-----------------------cc-------cchHHHHH
Confidence 9999999999999999999999999997541 11000 00 12477899
Q ss_pred HhhCCChhHHHHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCCCC--CCCCCCccccHH
Q 000134 1900 LTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLE--KPELVPFRLTQN 1977 (2096)
Q Consensus 1900 ~~~f~~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l~--~pE~VPFRLT~n 1977 (2096)
.+.+|++.+|..+|.+|++|+|+||++|||||+||||++||||+ .+|+++|||||++|+..+.+. .+|++||+||++
T Consensus 175 ~~~~~~~~~~~~a~~nFi~S~AgYsV~tYiLgIgDRHndNImi~-~~GhlfHIDFG~iLg~~~~~g~~~re~~PF~Lt~e 253 (354)
T cd00895 175 QKHNPTEDEYEKAVENFIYSCAGCCVATYVLGICDRHNDNIMLK-TTGHMFHIDFGRFLGHAQMFGNIKRDRAPFVFTSD 253 (354)
T ss_pred HHhCCChHHHHHHHHHHHHHHHHHHHHHHHccccccCCCceeEc-CCCCEEEEeeHHhcCCCcccCCCCcCCCCccccHH
Confidence 99999999999999999999999999999999999999999999 699999999999999876543 589999999999
Q ss_pred HHHhhcCCCcc----chHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccccccCCCCccccchhHHHHHHHHHHHhhc
Q 000134 1978 MIDGLGITGYE----GTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSSGVEVENPHAQRAISNIEARLQG 2053 (2096)
Q Consensus 1978 mv~~mG~~G~e----G~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~~~~~~~~~~~n~~a~~~l~~i~~kL~g 2053 (2096)
|+++||..|.+ ..|+..|..++.+||+|.+.|+++++.++.--+.+... .+.+..+++|+.-
T Consensus 254 mv~vm~gg~~~S~~f~~F~~lc~~ay~~lRk~~~~il~L~~lM~~sgiP~l~~--------------~~~i~~l~~rf~l 319 (354)
T cd00895 254 MAYVINGGDKPSSRFHDFVDLCCQAYNLIRKHTHLFLNLLGLMLSCGIPELSD--------------LEDLKYVYDALRP 319 (354)
T ss_pred HHHHhcCCCCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCcccCc--------------chHHHHHHHHhCC
Confidence 99999754432 36999999999999999999999999999654444321 2357778888752
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHhCc
Q 000134 2054 SVVGVGAAPSLPLAVEGQARRLIAEAVSH 2082 (2096)
Q Consensus 2054 ~~~~~~~~~~~~lsv~~qV~~LI~~Atd~ 2082 (2096)
-.. .--...++..||+.|.+.
T Consensus 320 ~~s--------e~eA~~~f~~lI~~s~~s 340 (354)
T cd00895 320 QDT--------EADATTYFTRLIESSLGS 340 (354)
T ss_pred CCC--------HHHHHHHHHHHHHHHHhh
Confidence 111 112345788999998763
No 29
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=2.1e-42 Score=413.76 Aligned_cols=277 Identities=19% Similarity=0.316 Sum_probs=226.8
Q ss_pred CCCCcceEeeec-CceEEecCCCcceEEEEEecCC------CeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCC
Q 000134 1743 SASDLPTISGIA-DEAEILSSLQRPKKIVLLGSDG------IKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRR 1815 (2096)
Q Consensus 1743 ~~~~~v~I~~f~-~~v~V~~S~q~PkrI~i~gsDG------k~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR 1815 (2096)
|..+.+.+.++. +++.|++|+.+|.+|++.++|| ..|.+++|.+||||||+++||++++||++|++.. .
T Consensus 56 Pl~P~~~~~~i~~e~c~v~~S~~~Pl~l~f~~~d~~~~~~~~~~~~IfK~GDDLRQD~l~lQli~lmd~i~~~~~----l 131 (366)
T cd05175 56 PLNPAHQLGNLRLEECRIMSSAKRPLWLNWENPDIMSELLFQNNEIIFKNGDDLRQDMLTLQIIRIMENIWQNQG----L 131 (366)
T ss_pred CCCCceEEEEEEeccceeechhcCCeEEEEEcCCcccccccCCcceEEeCCCCccHHHHHHHHHHHHHHHHHHCC----C
Confidence 345668899985 6899999999999999999998 4699999999999999999999999999998864 6
Q ss_pred CeeeeecceeeecCCcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHH
Q 000134 1816 KLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVF 1895 (2096)
Q Consensus 1816 ~L~i~tY~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl 1895 (2096)
+|++++|.|+|+++++|+||||+|+.|+.+|..+. |.. +.. ....+.+
T Consensus 132 dL~l~pY~vl~tg~~~GlIE~V~ns~tl~~I~~~~----~~~-----------------~~~-----------~~~~~~l 179 (366)
T cd05175 132 DLRMLPYGCLSIGDCVGLIEVVRNSHTIMQIQCKG----GLK-----------------GAL-----------QFNSHTL 179 (366)
T ss_pred CeEEEEEEEEEecCCceEEEEcCCchhHHHHHhcc----ccc-----------------ccc-----------ccCchhH
Confidence 89999999999999999999999999999985421 100 000 0012467
Q ss_pred HHHHHhhCCChhHHHHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCC-C-CCCCCCCcc
Q 000134 1896 HKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLL-L-EKPELVPFR 1973 (2096)
Q Consensus 1896 ~~wf~~~f~~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~-l-~~pE~VPFR 1973 (2096)
++||.+.+++ ..|..+|.+|++|+|+||++|||||+||||++|||++ .+|+++|||||++|+.++. + ..||+||||
T Consensus 180 ~~~l~~~~~~-~~~~~a~~nF~~S~AgYsV~tYiLGIgDRHndNImi~-~~G~l~HIDFG~iLg~~p~~~~~~~E~~PFk 257 (366)
T cd05175 180 HQWLKDKNKG-EMYDAAIDLFTRSCAGYCVATFILGIGDRHNSNIMVK-DDGQLFHIDFGHFLDHKKKKFGYKRERVPFV 257 (366)
T ss_pred HHHHhhcCCc-HHHHHHHHHHHHHHHHHHHHHHHhcccccCccceeEc-CCCCEEEEehHHhhcCCCccCCCCCCCCCeE
Confidence 8899887764 5688999999999999999999999999999999999 5999999999999998764 3 469999999
Q ss_pred ccHHHHHhhcCCC-----cc--chHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccccccCCCCccccchhHHHHHHH
Q 000134 1974 LTQNMIDGLGITG-----YE--GTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSSGVEVENPHAQRAISN 2046 (2096)
Q Consensus 1974 LT~nmv~~mG~~G-----~e--G~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~~~~~~~~~~~n~~a~~~l~~ 2046 (2096)
||++|+..||..+ .+ +.|+..|..++.+||+|.+.|+++++.++.--+.+... ...+..
T Consensus 258 LT~emv~v~~gg~~~~~~s~~f~~F~~lc~~ay~~lRk~~~~ii~L~~lM~~sgiP~l~~--------------~~~i~~ 323 (366)
T cd05175 258 LTQDFLIVISKGAQECTKTREFERFQEMCYKAYLAIRQHANLFINLFSMMLGSGMPELQS--------------FDDIAY 323 (366)
T ss_pred ecHHHHHHhccCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCC--------------ccHHHH
Confidence 9999999997532 23 58999999999999999999999999998655544321 123567
Q ss_pred HHHHhhccccccCCCCCCCCC---HHHHHHHHHHHHhCc
Q 000134 2047 IEARLQGSVVGVGAAPSLPLA---VEGQARRLIAEAVSH 2082 (2096)
Q Consensus 2047 i~~kL~g~~~~~~~~~~~~ls---v~~qV~~LI~~Atd~ 2082 (2096)
+++|+.= .+| ...+...+|.+|.+.
T Consensus 324 lr~rf~l-----------~~sd~eA~~~f~~~I~~s~~~ 351 (366)
T cd05175 324 IRKTLAL-----------DKTEQEALEYFMKQMNDAHHG 351 (366)
T ss_pred HHHhcCC-----------CCCHHHHHHHHHHHHHHHHhc
Confidence 7777652 223 334567788888653
No 30
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=100.00 E-value=2.2e-41 Score=418.81 Aligned_cols=341 Identities=31% Similarity=0.496 Sum_probs=279.5
Q ss_pred hHHHHHHHHhcCChhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchh
Q 000134 1186 CMQGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMD 1265 (2096)
Q Consensus 1186 ~~~~vEAAWrlg~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~e 1265 (2096)
+|+++|||||+|+||.+++++...+.+ +.+..+++++.++++++.+++...|+++|..++.++++.+.+
T Consensus 1 ~~~~~eaaWrl~~Wd~l~~~~~~~~~~-----------~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~ 69 (352)
T PF02259_consen 1 APLAAEAAWRLGDWDLLEEYLSQSNED-----------SPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSE 69 (352)
T ss_pred ChHHHHHHHhcCChhhHHHHHhhccCC-----------ChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 368999999999999999998876542 347889999999999999999999999999999999999999
Q ss_pred hHHhhhHHHHHhhhhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCC
Q 000134 1266 SYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLG 1345 (2096)
Q Consensus 1266 Sy~r~y~~l~kLH~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~ 1345 (2096)
||+++||.+++||+|+||||+.++..+.. ......+.+.+.|+.|++.++++++.|++||++|+++++.....
T Consensus 70 s~~~~y~~l~~lq~L~Elee~~~~~~~~~-------~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~ 142 (352)
T PF02259_consen 70 SYQRAYPSLVKLQQLVELEEIIELKSNLS-------QNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLP 142 (352)
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHhhc-------ccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccch
Confidence 99999999999999999999999874211 11467888999999999999999999999999999999977777
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC------CChHHHHHHHHHHHcCCchHHHHHHHHHhhc-CCcccccc
Q 000134 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASG------APNVHMEKAKLLWSTRRSDGAIAELQQNLLN-KPVEVVGS 1418 (2096)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~all~a~~~~------~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~-~~~~~~~~ 1418 (2096)
.+++.+|+++|++|||+|++++|.++|.++..++ .|.+.+|+||++|++|++.+|++.|+..+++ +.......
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 8999999999999999999999999999999877 8999999999999999999999999999883 22211000
Q ss_pred cccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhccchHHHHHHHH
Q 000134 1419 TAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYT----GQKQKEDVITLYSRVRELQPMWEKGYFYMA 1494 (2096)
Q Consensus 1419 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~----~~~~~~~i~~~Y~~a~~l~~~weK~~~~la 1494 (2096)
. ...+..... . ........+.........|++++++|+|.+.. +....+++.+.|++|++++|+|+|+||+||
T Consensus 223 ~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a 299 (352)
T PF02259_consen 223 S-NAELKSGLL-E-SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWA 299 (352)
T ss_pred c-HHHHhhccc-c-ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 0 000000000 0 00000001112334568899999999999999 888899999999999999999999999999
Q ss_pred hhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcchhhhHHHHHH
Q 000134 1495 KYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLT 1552 (2096)
Q Consensus 1495 ~y~d~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~~~q~lpRlLt 1552 (2096)
+|+|+++.......... .+....+|+..||.||++|+.+|+++++|++|||||
T Consensus 300 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ai~~y~~al~~~~~~~~~~~~RlLt 352 (352)
T PF02259_consen 300 LFNDKLLESDPREKEES-----SQEDRSEYLEQAIEGYLKALSLGSKYVRQDLPRLLT 352 (352)
T ss_pred HHHHHHHHhhhhccccc-----chhHHHHHHHHHHHHHHHHHhhCCCchHHHhhHhcC
Confidence 99999985433221110 002345799999999999999999999999999986
No 31
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-33 Score=338.70 Aligned_cols=461 Identities=21% Similarity=0.292 Sum_probs=304.2
Q ss_pred HHHHHHHHhhccCCcchhhhHHHHHHhhhhcCccccccCCCChhhhHhHHHHHHHHHHhhcCCCCCchhhhhhHHhhhcc
Q 000134 1527 DVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRI 1606 (2096)
Q Consensus 1527 ~ai~~Y~~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~iP~~~wl~~lPQLisRl 1606 (2096)
.|+.-|++|+......-...-.+++-=|=...........++ .-.+..|.......+.....-..+..++||+..+
T Consensus 309 KALtK~L~sv~W~~~qe~kqal~lM~~W~~id~~dalellss----~f~~~sVrayavsrl~~a~deelllYL~qlvqal 384 (843)
T KOG0906|consen 309 KALTKFLRSVNWRDPQEVKQALALMDKWEEIDVEDALELLSS----YFTHPSVRAYAVSRLKGADDEELLLYLLQLVQAL 384 (843)
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHhhccccchhhhhhhhccc----cccCHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 589999999988766433333466666733221100000000 0112334444444555565666777788888877
Q ss_pred ccCc----hH-----------------------------------------HHHHHHHHHHHHHHhchhhH--HHHHHHh
Q 000134 1607 CHQN----EE-----------------------------------------IVRLVKHIITSVLRQYPQQG--LWIMAAV 1639 (2096)
Q Consensus 1607 ~h~~----~~-----------------------------------------v~~~l~~il~kv~~~yPqq~--lw~l~~~ 1639 (2096)
+..+ ++ ..++...++.+...++--.. +|++...
T Consensus 385 ~ye~~~~~p~~~~~~~v~s~~~~si~s~~t~pl~s~ss~~~ts~tke~p~~~s~La~fLi~Ral~n~~l~nflywyl~~e 464 (843)
T KOG0906|consen 385 KYENGQQLPEEGNPVPVVSEREGSIPSVATTPLESLSSRDMTSTTKEAPKAASDLATFLISRALVNPQLANFLYWYLKVE 464 (843)
T ss_pred HHHhhccCCcccCcCcccccccccccccccCccccccCCCccccccccccccchHHHHHHHHHhcCccccceEEEEEEEE
Confidence 7655 11 11356677777776643333 4555444
Q ss_pred hcCCChhHHHHHHHHHHHHH---hcCCCCCchhchHHHHHHHHHHHHHHhhccCCccccccchhHhhHHHHhhccCCccc
Q 000134 1640 SKSTIPSRREAAAEIIQAAK---KGSAHGNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIM 1716 (2096)
Q Consensus 1640 ~~S~~~~R~~~~~~Il~~~~---~~~~~~~~~~~li~~~~~l~~~Li~l~~~~~~~~~~~~~l~~~f~~l~~~~~~~~i~ 1716 (2096)
..++. -.++...|+.... ...++...+...+.+...++++|.+++........++..-.. .++.++....-+
T Consensus 465 ~Ed~~--~~kry~si~~~f~~~l~K~~d~r~~~~~L~~Q~~lVd~L~~i~~~v~~~~g~~~kK~e---~L~~lL~~~~~~ 539 (843)
T KOG0906|consen 465 IEDTP--YSKRYLSIMSSFLEALSKRPDGRAIRGSLEAQQALVDELRRIMKEVKRGSGRRKKKIE---RLRGLLGDHKHM 539 (843)
T ss_pred ecCCh--HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHH---HHHHHHhccccc
Confidence 44332 2223444443332 222222223456677788999999998643221111111111 122221110001
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCCCCCcceEeee-cCceEEecCCCcceEEEEEecCCC-eeeEEecCCCcchhhHH
Q 000134 1717 PIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGI-ADEAEILSSLQRPKKIVLLGSDGI-KRPFLCKPKDDLRKDSR 1794 (2096)
Q Consensus 1717 P~~~~l~~~LP~~~~~~~~~~~~~~f~~~~~v~I~~f-~~~v~V~~S~q~PkrI~i~gsDGk-~y~fL~K~~dDlR~D~R 1794 (2096)
|+ .+.. .- |-|..+.++|.++ .++..++.|-..|-+|+|+..+|. .|+.++|.|||||||+.
T Consensus 540 ~l----------~~~~----~i--~lpldp~v~i~~Iip~t~~~FkSsl~Pl~l~fkt~~g~g~y~vIFK~GDDLrQDql 603 (843)
T KOG0906|consen 540 NL----------LDVR----LI--ALPLDPDVLIKGIIPDTASLFKSSLMPLKLTFKTDDGGGKYPVIFKKGDDLRQDQL 603 (843)
T ss_pred cc----------ccce----ee--ccCCCCCceEeeecCchhhhhhhccCceeEEEEecCCCCceeEEEecCcchhHHHH
Confidence 11 0000 01 1223467899998 588999999999999999999998 99999999999999999
Q ss_pred HHHHHHHHHHHhccCCcccCCCeeeeecceeeecCCcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHh
Q 000134 1795 MMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQ 1874 (2096)
Q Consensus 1795 ~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~ 1874 (2096)
+.|+.++||++|++.. -+|.+.+|.|+|+++.-|++|+|++ .++..|+.++.. +...+....
T Consensus 604 V~Qii~lMd~LLkken----lDLkLtpYkVLatg~~eG~vefI~s-~~la~Ils~~~~-------------I~~ylke~~ 665 (843)
T KOG0906|consen 604 VLQIIRLMDRLLKKEN----LDLKLTPYKVLATGPKEGFVEFIPS-KPLARILSEYHS-------------ILMYLKEDR 665 (843)
T ss_pred HHHHHHHHHHHhcccc----ccccceeeEEeccCCCcccEEeecC-CcHHHHHHHHHH-------------HHHHHHhhC
Confidence 9999999999999986 5899999999999999999999995 789999876432 111111100
Q ss_pred cCCChHHHHHHhhcCCCchHHHHHHHhhCCChhHHHHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeec
Q 000134 1875 GKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDF 1954 (2096)
Q Consensus 1875 ~~~~~~~~~~~~i~~~~~pvl~~wf~~~f~~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF 1954 (2096)
. ++ ..| ...=...+.+|++|||.+|+++||||+||||++|+|+. .+|++|||||
T Consensus 666 p----~e--------------------~ap-~gi~~~v~dnfVkScaGYsVitYILGvGDRhldNLllT-~dGk~FHiDF 719 (843)
T KOG0906|consen 666 P----DE--------------------NAP-FGISPEVMDNFVKSCAGYSVITYILGVGDRHLDNLLLT-KDGKLFHIDF 719 (843)
T ss_pred C----Cc--------------------CCC-CCCChhHHHHHHHhhccceeeeeeecccCCCcCceEEc-cCCcEEEEee
Confidence 0 00 000 01124567899999999999999999999999999998 5999999999
Q ss_pred cccccccCCCCCCCCCCccccHHHHHhhcCCCc--cchHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccccccCCCC
Q 000134 1955 SCLFDKGLLLEKPELVPFRLTQNMIDGLGITGY--EGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSSG 2032 (2096)
Q Consensus 1955 ~~~F~kg~~l~~pE~VPFRLT~nmv~~mG~~G~--eG~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~~~~~~~ 2032 (2096)
|++|++. |+|-..|..|++.|+++||.... ...|+.-|..++..||++...|+++.+++...-+.+...
T Consensus 720 gyIlGRD---PKP~pp~MkL~kemve~mgg~es~~Yq~F~s~c~~Af~~LRRssnlIlnLf~LM~~~~IPDia~------ 790 (843)
T KOG0906|consen 720 GYILGRD---PKPFPPPMKLAKEMVEGMGGAESKQYQEFRSYCYEAFLILRRSSNLILNLFSLMADANIPDIAF------ 790 (843)
T ss_pred eeeccCC---CCCCCCccccCHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCceee------
Confidence 9999999 67778899999999999996543 248999999999999999999999999998665544322
Q ss_pred ccccchhHHHHHHHHHHHhhccccccCCCCCCCCCH---HHHHHHHHHHHhCc
Q 000134 2033 VEVENPHAQRAISNIEARLQGSVVGVGAAPSLPLAV---EGQARRLIAEAVSH 2082 (2096)
Q Consensus 2033 ~~~~n~~a~~~l~~i~~kL~g~~~~~~~~~~~~lsv---~~qV~~LI~~Atd~ 2082 (2096)
+..+++.++++|++= .+|- -.+.+.||++|.+.
T Consensus 791 ------dp~k~I~kvqeRfrL-----------dmSde~A~~~fq~lI~~SV~A 826 (843)
T KOG0906|consen 791 ------DPNKAILKVQERFRL-----------DMSDEAATKHFQKLINESVNA 826 (843)
T ss_pred ------CcchhhHHHHHHHcc-----------cccHHHHHHHHHHHHHHHHHH
Confidence 124678888888863 2232 23566677776653
No 32
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-33 Score=354.59 Aligned_cols=380 Identities=21% Similarity=0.343 Sum_probs=286.2
Q ss_pred HHHHHHHhhcCCCCCchhhhhhHHhhhccccCchHHHHHHHHHHHHHHH--hchhhHHHHHHHhhcC-CChhHHHHHHHH
Q 000134 1578 KVMSIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLR--QYPQQGLWIMAAVSKS-TIPSRREAAAEI 1654 (2096)
Q Consensus 1578 ~v~~~~~~~~~~iP~~~wl~~lPQLisRl~h~~~~v~~~l~~il~kv~~--~yPqq~lw~l~~~~~S-~~~~R~~~~~~I 1654 (2096)
+|.+..-.-+.+++....+..|||+|..+.+.--.-..+++-||.+-.. .+.|..+|.+.-..+. ....|. +.+
T Consensus 905 eVR~~AVqwi~~ls~DeL~d~LPQlVQALK~E~yl~S~Lv~FLL~rsl~sl~~ah~lYWlLk~~l~d~qfs~rY---q~l 981 (1639)
T KOG0905|consen 905 EVRAHAVQWIARLSNDELLDYLPQLVQALKFELYLKSALVQFLLSRSLVSLQFAHELYWLLKDALDDSQFSLRY---QNL 981 (1639)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHhcchHHHHHHHHHHhhccccceeehHH---HHH
Confidence 4555555678899999999999999999988533334455566655543 4678899999765543 344444 555
Q ss_pred HHHHHhcCCCCCchhchHHHHHHHHHHHHHHhhcc--CCccccccchhHhhHHHHhhccCCcccccccccccccCCCCCC
Q 000134 1655 IQAAKKGSAHGNSANNLFGQFTSLIDHLIKLCFHA--GQSKSRTINISTEFSALKRMMPLGIIMPIQQSLTVTLPPQDAN 1732 (2096)
Q Consensus 1655 l~~~~~~~~~~~~~~~li~~~~~l~~~Li~l~~~~--~~~~~~~~~l~~~f~~l~~~~~~~~i~P~~~~l~~~LP~~~~~ 1732 (2096)
+.++.... +.+..+-+.-..+|+.+|-.++... .....|...+......++..+ +.+-+..||-
T Consensus 982 l~aLl~~~--gk~L~~ef~~Q~~Lv~~L~~iae~Vr~as~s~Rq~vL~~~l~~v~~ff--------~~n~tcrLPL---- 1047 (1639)
T KOG0905|consen 982 LAALLDCC--GKNLREEFKKQHKLVNELGSIAEDVRSASGSARQHVLRTGLGRVDSFF--------LQNNTCRLPL---- 1047 (1639)
T ss_pred HHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhHHHHHHHH--------HhCCceeccc----
Confidence 55554333 1222333444566777777776432 112222223333333333321 1222333442
Q ss_pred CCCCCCCCCCCCCCcceEeeec-CceEEecCCCcceEEEEEe--cCCCeeeEEecCCCcchhhHHHHHHHHHHHHHhccC
Q 000134 1733 LTESPSSDIFSASDLPTISGIA-DEAEILSSLQRPKKIVLLG--SDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKY 1809 (2096)
Q Consensus 1733 ~~~~~~~~~f~~~~~v~I~~f~-~~v~V~~S~q~PkrI~i~g--sDGk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~ 1809 (2096)
.+...+.|+. ++..+++|...|-||+|+| -+|..++.++|.+||||||+.+||++++||++|.++
T Consensus 1048 ------------~Pal~vkGv~i~~CSyFnSNA~PLKitFvnadp~geni~iIfK~gDDLRQDml~lQmI~iMdkIWl~e 1115 (1639)
T KOG0905|consen 1048 ------------CPALDVKGVRIRECSYFNSNALPLKITFVNADPLGENISIIFKCGDDLRQDMLVLQMIRIMDKIWLQE 1115 (1639)
T ss_pred ------------CchheeccccccccccccCCCcceEEEEecCCCccccceeeeecCchHHHHHHHHHHHHHHHHHHHhc
Confidence 2223455664 5688899999999999999 679999999999999999999999999999999998
Q ss_pred CcccCCCeeeeecceeeecCCcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcC
Q 000134 1810 PESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILP 1889 (2096)
Q Consensus 1810 ~etrrR~L~i~tY~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 1889 (2096)
. -+|.+.+|.++|.+-+.|++|.|||+.||+.|-.+ +.-.|.+ |+
T Consensus 1116 g----LDlrMViFrc~stG~~rgMvElVp~a~TLrKIQve-~GltGsf--------------------------kD---- 1160 (1639)
T KOG0905|consen 1116 G----LDLRMVIFRCLSTGYDRGMVELVPNAETLRKIQVE-EGLTGSF--------------------------KD---- 1160 (1639)
T ss_pred C----CceeEEEEEeecccccccceeecccHHHHHHHHHH-hcccccc--------------------------cc----
Confidence 5 58999999999999999999999999999998543 1111211 11
Q ss_pred CCchHHHHHHHhhCCChhHHHHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCCCC--CC
Q 000134 1890 MFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLE--KP 1967 (2096)
Q Consensus 1890 ~~~pvl~~wf~~~f~~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l~--~p 1967 (2096)
..+.+|+.+..|++.+|-.|-.||+.|||.||+++||||++|||.+|||+. +||++||||||-.++....|. +.
T Consensus 1161 ---~pla~WL~KhNp~e~eYekA~eNFiySCAG~cVaTYVLGIcDRHNDNIMl~-~sGHmFHIDFGKFLGhaQMfg~fKR 1236 (1639)
T KOG0905|consen 1161 ---RPLAKWLMKHNPSEFEYEKAVENFIYSCAGWCVATYVLGICDRHNDNIMLT-KSGHMFHIDFGKFLGHAQMFGGFKR 1236 (1639)
T ss_pred ---chHHHHHHhcCCCHHHHHHHHHHHHHhcccceeeeEeeecccccCCceEEe-ccCcEEEEehhhhcchHHHhccccc
Confidence 146789999999999999999999999999999999999999999999997 699999999999998876653 47
Q ss_pred CCCCccccHHHHHhhcCCCc----cchHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccc
Q 000134 1968 ELVPFRLTQNMIDGLGITGY----EGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWT 2025 (2096)
Q Consensus 1968 E~VPFRLT~nmv~~mG~~G~----eG~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~ 2025 (2096)
.++||-+|.+|..++...+- ...|...|+.++..+|+|.+.|+++|+.++.-.+.+-+
T Consensus 1237 DRaPFVfTSdMayvINgG~kpt~~fq~FVDlCCrAyNiiRK~t~lllnlL~lM~~agiPeln 1298 (1639)
T KOG0905|consen 1237 DRAPFVFTSDMAYVINGGDKPTQRFQDFVDLCCRAYNIIRKNTNLLLNLLRLMACAGIPELN 1298 (1639)
T ss_pred ccCCeEEeccchhhhcCCCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCcc
Confidence 89999999999999875443 45899999999999999999999999999987765543
No 33
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=99.97 E-value=2e-31 Score=330.36 Aligned_cols=387 Identities=19% Similarity=0.282 Sum_probs=280.6
Q ss_pred HHHHHHhhcCCCCCchhhhhhHHhhhccccCchHHHHHHHHHHHHHHHhc--hhhHHHHHHHhhcCCChhHHHHHHHHHH
Q 000134 1579 VMSIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQY--PQQGLWIMAAVSKSTIPSRREAAAEIIQ 1656 (2096)
Q Consensus 1579 v~~~~~~~~~~iP~~~wl~~lPQLisRl~h~~~~v~~~l~~il~kv~~~y--Pqq~lw~l~~~~~S~~~~R~~~~~~Il~ 1656 (2096)
|.++.-+++..+....++-++-|||+.+.+..-.-..+.+-++.|...++ -|..+|++.+-+... .-..|-.-|++
T Consensus 627 VR~fAV~~L~~Lsdd~l~~YLLqLVQalKyEpylds~L~rFLL~RAL~N~RIGHflFWhLRSEm~~~--~~~~RfgllLE 704 (1076)
T KOG0904|consen 627 VRAFAVRCLEQLSDDDLLQYLLQLVQALKYEPYLDSALVRFLLKRALRNQRIGHFLFWHLRSEMAQP--SVQQRFGLLLE 704 (1076)
T ss_pred HHHHHHHHHHhcChhHHHHHHHHHHHHHhccchhHhHHHHHHHHHHhhccccchhhhhhHHHHhccH--HHHHHHHHHHH
Confidence 44454566788999999999999999999976655778888888888775 789999998876433 44445566888
Q ss_pred HHHhcCCCCCchhchHHHHHHHHHHHHHHhhccCCccccccchhHhhHHHHhhccCCcccccccccccccCCCCCCCCCC
Q 000134 1657 AAKKGSAHGNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQSLTVTLPPQDANLTES 1736 (2096)
Q Consensus 1657 ~~~~~~~~~~~~~~li~~~~~l~~~Li~l~~~~~~~~~~~~~l~~~f~~l~~~~~~~~i~P~~~~l~~~LP~~~~~~~~~ 1736 (2096)
...+.+.. .+ +.+...-...+.|.++.-..+. ++.+.+.+..-..++.++...-... .+. ++.
T Consensus 705 aYlRGc~~--hl-k~l~kQve~l~kLk~lt~~iK~-~~~K~~~~~~~~~l~~~lr~~~~~~--------~lq---~l~-- 767 (1076)
T KOG0904|consen 705 AYLRGCTH--HL-KVLTKQVEALEKLKKLTDLIKL-SAEKEDVSQVKEQLKLCLRQLANSE--------ALQ---NLQ-- 767 (1076)
T ss_pred HHHhccHH--HH-HHHHHHHHHHHHHHHHHHHHhh-cCccccHHHHHHHHHHHHHhHHHHH--------HHH---hcc--
Confidence 77665421 11 2333333344555554322111 1111111111122222211100000 000 000
Q ss_pred CCCCCCCCCCcceEeee-cCceEEecCCCcceEEEEEe----cCCCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCc
Q 000134 1737 PSSDIFSASDLPTISGI-ADEAEILSSLQRPKKIVLLG----SDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPE 1811 (2096)
Q Consensus 1737 ~~~~~f~~~~~v~I~~f-~~~v~V~~S~q~PkrI~i~g----sDGk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~e 1811 (2096)
.|. .+....... -++..||.|+.||-.+.+-. +++ .-..++|.|||||||..+.|+.++|+.+|+...
T Consensus 768 ---sPL--dP~~~lgel~iekckvM~SkkrPLwl~~~Np~~~s~~-~v~iIFKNGDDLRQDMLtLQmLriMd~iWk~~g- 840 (1076)
T KOG0904|consen 768 ---SPL--DPSLKLGELIIEKCKVMDSKKRPLWLVFENPDAGSNL-SVGIIFKNGDDLRQDMLTLQMLRIMDNIWKTEG- 840 (1076)
T ss_pred ---CCC--ChhhhhcchhhhhhhhhhccCCceEEEecCCCcccCC-ceeEEEcCCchHHHHHHHHHHHHHHHHHHHhcC-
Confidence 011 122233333 47899999999999999843 334 567889999999999999999999999999886
Q ss_pred ccCCCeeeeecceeeecCCcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCC
Q 000134 1812 SRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMF 1891 (2096)
Q Consensus 1812 trrR~L~i~tY~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 1891 (2096)
-+|.+.+|.++|++...||||-|+|+.|+.+|-.+ .|.. ... .+--
T Consensus 841 ---lDlrm~PYgcls~Gd~iGlIEVV~~s~TIa~IQ~~----~g~~--------------------~at-------~afn 886 (1076)
T KOG0904|consen 841 ---LDLRMLPYGCLSTGDRIGLIEVVRNSETIANIQLN----TGNM--------------------AAT-------AAFN 886 (1076)
T ss_pred ---CCeeccccccccccceeeeEEEecCchhhhhhhhc----cccc--------------------eee-------ccCC
Confidence 58999999999999999999999999999888422 1111 000 0111
Q ss_pred chHHHHHHHhhCCChhHHHHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCC-C-CCCCC
Q 000134 1892 PPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLL-L-EKPEL 1969 (2096)
Q Consensus 1892 ~pvl~~wf~~~f~~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~-l-~~pE~ 1969 (2096)
+..|.+|+.+..|....+=++-..||.|||.+|+++||||+||||.+|||+. .||++||||||.++|.+++ | -..|+
T Consensus 887 ~~~L~~WLKekNp~e~kld~AIe~Ft~SCAGYcVATyVLGIgDRHsDNIMvk-e~GqlFHIDFGHiLGh~KsKlGi~RER 965 (1076)
T KOG0904|consen 887 KDALLNWLKEKNPGEDKLDAAIEEFTLSCAGYCVATYVLGIGDRHSDNIMVK-ETGQLFHIDFGHILGHFKSKLGINRER 965 (1076)
T ss_pred HHHHHHHHhhcCchHHHHHHHHHHHHHhhccceeeeeeecccccccCceEEe-ccCcEEEEEhhhhhccchhhcCccccc
Confidence 3478999999888877788999999999999999999999999999999997 6999999999999998764 4 45899
Q ss_pred CCccccHHHHHhhcCCCc------cchHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCccccc
Q 000134 1970 VPFRLTQNMIDGLGITGY------EGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTK 2026 (2096)
Q Consensus 1970 VPFRLT~nmv~~mG~~G~------eG~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~ 2026 (2096)
|||-||++++..|+-.+. .+.|+.+|+.+.-+||+|...++++...++--.+.+.+.
T Consensus 966 vPFvLT~dFl~VI~~G~~~~~~~eF~kFq~~C~~AYl~lr~H~nLfi~LFsmMl~~glPELss 1028 (1076)
T KOG0904|consen 966 VPFVLTYDFLHVIQKGKTKNSEKEFQKFQELCEKAYLALRRHGNLFISLFSMMLGTGLPELSS 1028 (1076)
T ss_pred CceEeecceeeeecccCCCCchhHHHHHHHHHHHHHHHHHHccccHHHHHHHHHhcCCCcccc
Confidence 999999999999986543 257999999999999999999999999999888877654
No 34
>KOG0902 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]
Probab=99.96 E-value=3e-28 Score=313.00 Aligned_cols=377 Identities=18% Similarity=0.300 Sum_probs=253.1
Q ss_pred HHHHHHhhcCCCCCchhhhhhHHhhhccccCchHHHHHHHHHHHHHHHhchhhHHHHHHHhhcCCChhHH-HHHHHHH--
Q 000134 1579 VMSIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSRR-EAAAEII-- 1655 (2096)
Q Consensus 1579 v~~~~~~~~~~iP~~~wl~~lPQLisRl~h~~~~v~~~l~~il~kv~~~yPqq~lw~l~~~~~S~~~~R~-~~~~~Il-- 1655 (2096)
+...--+.+...|+..-+..+||||+.+..+.....+-...=...-.+-+.||.+|.|.+...-+...-. ....+|+
T Consensus 1352 ~~~~~~~~l~s~~~~~~~fyvPQiVq~lryDkm~~v~~~il~~a~~s~l~aHqliWnm~~n~y~d~~~~~~~~~~~~l~~ 1431 (1803)
T KOG0902|consen 1352 LMQYAVRVLRSYSPNEMLFYVPQIVQALRYDKMGYVEEYILWAAGKSQLFAHQLIWNMKANLYVDEEAIVKADIGEILDR 1431 (1803)
T ss_pred HHHHHHHHHHhCChhhhhhhhHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHhhhhhccccccccchhHHHHHHH
Confidence 3344444577889999999999999999987643322222222233455899999999875432211111 2334444
Q ss_pred --HHHHhcCCCCCchhchHHHHHHHHHHHHHHhhc----cCCccccccchhHhhHHHHhhccCCcccccccccc-cccCC
Q 000134 1656 --QAAKKGSAHGNSANNLFGQFTSLIDHLIKLCFH----AGQSKSRTINISTEFSALKRMMPLGIIMPIQQSLT-VTLPP 1728 (2096)
Q Consensus 1656 --~~~~~~~~~~~~~~~li~~~~~l~~~Li~l~~~----~~~~~~~~~~l~~~f~~l~~~~~~~~i~P~~~~l~-~~LP~ 1728 (2096)
+++....+.. ...++..--.+++++..+... +.. ..++-.+.++.+.++ +.| ++++|...... +.+.-
T Consensus 1432 ~~e~i~~~~s~~--a~df~~rEf~ff~~vT~ISg~l~P~~k~-~erk~~i~~~l~kik-~~~-~~YlPs~P~~~v~~i~~ 1506 (1803)
T KOG0902|consen 1432 VREEITGSLSGP--ARDFYEREFDFFNKVTSISGKLKPYPKG-DERKKAILEELSKIK-VQP-GCYLPSNPDAVVLDIDY 1506 (1803)
T ss_pred HHHHHHhcCCch--hhHHHHHHhHHHHHhhhccceeecCCCc-HHHHHHHHHHHHhhc-ccC-ceecCCCCCceEEEeec
Confidence 4444333322 234555545666666665421 111 112222233333332 222 66666544322 12222
Q ss_pred CCCCCCCCCCCCCCCCCCcceEeeecCceEEecCCCcceEEEEEecCC-------CeeeEEecCCCcchhhHHHHHHHHH
Q 000134 1729 QDANLTESPSSDIFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDG-------IKRPFLCKPKDDLRKDSRMMEFTAM 1801 (2096)
Q Consensus 1729 ~~~~~~~~~~~~~f~~~~~v~I~~f~~~v~V~~S~q~PkrI~i~gsDG-------k~y~fL~K~~dDlR~D~R~mQl~~l 1801 (2096)
.++.+-.+....|| ...|. | ||+.--|-.+ +...-++|.|||+|||....|++.|
T Consensus 1507 ~Sg~plQS~aK~Pf-------matF~----v-------kr~~~~g~~~~~k~~~~~WQa~IFKvGDDcRQD~LaLQiisl 1568 (1803)
T KOG0902|consen 1507 KSGTPLQSAAKAPF-------MATFK----V-------KRLEKDGLQCRSKSQKISWQAAIFKVGDDCRQDMLALQIISL 1568 (1803)
T ss_pred CCCccchhhccCCe-------eEEEe----e-------eeccCCcccccccccchhhhhhhhhcCchHHHHHHHHHHHHH
Confidence 22222222222233 33331 1 1111111111 2234678999999999999999999
Q ss_pred HHHHhccCCcccCCCeeeeecceeeecCCcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHH
Q 000134 1802 INRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDE 1881 (2096)
Q Consensus 1802 iN~lL~~~~etrrR~L~i~tY~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 1881 (2096)
+..+++.-. -++++.+|.|+|.+|.||+||.|||+.+-.++- ++..
T Consensus 1569 f~~if~~~g----Ld~~lfPYrV~aT~pGcGVIEviPn~~SRdqlG-----------r~t~------------------- 1614 (1803)
T KOG0902|consen 1569 FKNIFQLVG----LDLYLFPYRVVATAPGCGVIEVIPNSKSRDQLG-----------RETD------------------- 1614 (1803)
T ss_pred HHHHHHHcC----CceEEeeeeeeccCCCCceEEeCCCCccHHHhc-----------cccc-------------------
Confidence 999998865 589999999999999999999999998754441 1101
Q ss_pred HHHHhhcCCCchHHHHHHHhhCCCh--hHHHHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeecccccc
Q 000134 1882 MLKTKILPMFPPVFHKWFLTTFSEP--AAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFD 1959 (2096)
Q Consensus 1882 ~~~~~i~~~~~pvl~~wf~~~f~~p--~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~ 1959 (2096)
.-|++||...|++- ..|-++|.||.+|+|.+|+++|.|.+.|||.+||||| .-|+++|||||++|+
T Consensus 1615 -----------~glyeyF~~~~G~~~s~~fq~Ar~NF~~S~A~Ysv~s~lLq~KDRHNGNim~D-d~G~~iHIDFGf~~e 1682 (1803)
T KOG0902|consen 1615 -----------NGLYEYFTRKYGDESSEAFQTARYNFVRSMAGYSVLSYLLQIKDRHNGNIMID-DQGHIIHIDFGFMFE 1682 (1803)
T ss_pred -----------ccHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHcccccccCCceeEc-cCCCEEEEeeeeEEe
Confidence 13567888888754 5799999999999999999999999999999999999 699999999999999
Q ss_pred ccCCC-CCCCCCCccccHHHHHhhcCCCc---cchHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccc
Q 000134 1960 KGLLL-EKPELVPFRLTQNMIDGLGITGY---EGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWT 2025 (2096)
Q Consensus 1960 kg~~l-~~pE~VPFRLT~nmv~~mG~~G~---eG~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~ 2025 (2096)
..+.. -.-|. ||+||.+|+..||+.-- ...|...|..++-+.|.+.+.|.+.++.|+...|.++.
T Consensus 1683 ~sPGgnl~fE~-~fKLt~Em~~~mgG~~~~~~f~~f~elcVk~yLA~R~~~~~iv~~V~~mldsgLPCfr 1751 (1803)
T KOG0902|consen 1683 SSPGGNLGFEP-PFKLTKEMVMLMGGKMEAKPFKWFQELCVKGYLAARPYMDAIVSLVQSMLDSGLPCFR 1751 (1803)
T ss_pred cCCCCccCcCC-CccchHHHHHHhCCCCCCCcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhcCCCccC
Confidence 87765 34566 99999999999993321 12688999999999999999999999999999999984
No 35
>KOG0903 consensus Phosphatidylinositol 4-kinase, involved in intracellular trafficking and secretion [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=8.6e-25 Score=270.31 Aligned_cols=249 Identities=20% Similarity=0.356 Sum_probs=199.6
Q ss_pred eEEEEEec--CCCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceeeecCCcceeEecCCCccHH
Q 000134 1767 KKIVLLGS--DGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLR 1844 (2096)
Q Consensus 1767 krI~i~gs--DGk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~~~GLIEwv~n~~tl~ 1844 (2096)
|+=+..|. ++...+.+||.||||||+....|++.-+-.+|.+... .|++|+|.|+-++.+.||||.|+|+.+++
T Consensus 574 RktS~Yg~~pnWdL~SVIVKtGdDLrQE~fA~Qli~~f~~IW~Eegv----plWlRpykIlvtss~sGLIEtI~da~SIH 649 (847)
T KOG0903|consen 574 RKTSPYGHLPNWDLRSVIVKTGDDLRQELFAYQLISAFKDIWQEEGV----PLWLRPYKILVTSSDSGLIETIVDAMSIH 649 (847)
T ss_pred hccCccccCCCcceEEEeeecCchHHHHHHHHHHHHHHHHHHHHcCC----cceeeeEEEEEEecCccceeeccchhhHH
Confidence 34444443 5677889999999999999999999999999998864 89999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHHHHHhhC-CChhHHHHHHHHHHHHhhHH
Q 000134 1845 NILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTF-SEPAAWFRARVAYAHTTAVW 1923 (2096)
Q Consensus 1845 ~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf~~~f-~~p~~w~~~R~~ft~S~Av~ 1923 (2096)
+|-..+ + +.- .|.+||...+ ++...|-.+.+||..|+|.|
T Consensus 650 sIKk~l-------------~--------------~~~------------~l~~F~~~~g~~NS~~yk~AQrNFvqSlagY 690 (847)
T KOG0903|consen 650 SIKKRL-------------P--------------NLA------------SLRHFFAAFGKPNSEKYKSAQRNFVQSLAGY 690 (847)
T ss_pred HHHHhc-------------c--------------hhh------------hHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Confidence 984331 0 000 1223333333 45578999999999999999
Q ss_pred HHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCCCCCCCCCCccccHHHHHhhcCCCccc----hHHHHHHHHH
Q 000134 1924 SMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMIDGLGITGYEG----TFLRVCEITL 1999 (2096)
Q Consensus 1924 S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l~~pE~VPFRLT~nmv~~mG~~G~eG----~F~~~~~~t~ 1999 (2096)
|+|+|+|.+.|||.+||||| ..|+|+|||||+++...+...--|..||+||.++++.|| |++| -|+..|-..+
T Consensus 691 SLvcYlLQvKDRHNGNILiD-~EGHIIHIDFGFmLsnsPgnvgFEsAPFKLT~EylEvmg--G~~~d~FdyfK~L~l~gf 767 (847)
T KOG0903|consen 691 SLVCYLLQVKDRHNGNILID-EEGHIIHIDFGFMLSNSPGNVGFESAPFKLTTEYLEVMG--GLDSDMFDYFKSLMLQGF 767 (847)
T ss_pred HHHHHhhhcccccCCceEec-CCCCEEEEeeeeEecCCCCCcccccCchhhHHHHHHHhc--CCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999 599999999999999998887789999999999999999 8888 6899999999
Q ss_pred HHHHhChhhHHHHHHHHhcCCC-cccccccCCCCccccchhHHHHHHHHHHHhhccccccCCCCCCCCCHHHHHHHHHHH
Q 000134 2000 SVLRTHRETLMSVLETFIHDPL-VEWTKSHKSSGVEVENPHAQRAISNIEARLQGSVVGVGAAPSLPLAVEGQARRLIAE 2078 (2096)
Q Consensus 2000 ~~LR~~~~~L~~iLe~fl~Dpl-~~W~~~~~~~~~~~~n~~a~~~l~~i~~kL~g~~~~~~~~~~~~lsv~~qV~~LI~~ 2078 (2096)
..+|+|.+.|..+.|++-.+-- .++.. ..+.+.++++|++=-+. .--++..|..||+-
T Consensus 768 ~a~RKhadrIv~lvEiMq~~S~~pCF~a-------------G~~Ti~nL~~RFhLslT--------Eeq~~~lV~~LI~k 826 (847)
T KOG0903|consen 768 MALRKHADRIVLLVEIMQDGSGMPCFRA-------------GERTIQNLRQRFHLSLT--------EEQCQDLVLSLISK 826 (847)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCccccc-------------ChHHHHHHHHHhccccc--------HHHHHHHHHHHHhh
Confidence 9999999999999999876432 22221 13678888898862211 01244556666666
Q ss_pred HhCc
Q 000134 2079 AVSH 2082 (2096)
Q Consensus 2079 Atd~ 2082 (2096)
+.+.
T Consensus 827 S~~S 830 (847)
T KOG0903|consen 827 SLDS 830 (847)
T ss_pred cccc
Confidence 6543
No 36
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=99.91 E-value=1.8e-24 Score=219.51 Aligned_cols=103 Identities=28% Similarity=0.575 Sum_probs=98.6
Q ss_pred hhhhhHHHHHHHHHHhhhhhcCCC---ChHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHhcCCCcchhhhHHHHH
Q 000134 488 LPGFLRNHFVGLLNSIDRKMLHAE---DLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHF 564 (2096)
Q Consensus 488 ~~~fl~~~~LGil~~~~~~l~~~~---~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL~~~~L~~~~l~~W~~ 564 (2096)
+++||++|||||++.|++++.+.. +..+|+++|+||++||+++|+||++++||||||||+||+.|+|++.|++||+.
T Consensus 1 ~~~fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~eL~~~al~~W~~ 80 (107)
T smart00802 1 LADFLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIPELRSLALRCWHV 80 (107)
T ss_pred ChHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 479999999999999999998865 78899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCcchhhHHHHHHHHhhhccc
Q 000134 565 FIEQLSRVSPSSTKHVISQVFAALIPFLE 593 (2096)
Q Consensus 565 fv~~L~~~~~~~l~~ll~~i~~~lip~~~ 593 (2096)
||++|++ ++++++++++|++++|+|+
T Consensus 81 ~i~~L~~---~~l~~ll~~~~~~i~~~~~ 106 (107)
T smart00802 81 LIKTLKE---EELGPLLDQIFAAILPLWP 106 (107)
T ss_pred HHHhCCH---HHHHHHHHHHHHHHHHhcc
Confidence 9999975 7999999999999999997
No 37
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=99.89 E-value=6.3e-23 Score=249.24 Aligned_cols=163 Identities=22% Similarity=0.401 Sum_probs=136.2
Q ss_pred cceEEEEEecCCCe-----------eeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceeeecCCcce
Q 000134 1765 RPKKIVLLGSDGIK-----------RPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGM 1833 (2096)
Q Consensus 1765 ~PkrI~i~gsDGk~-----------y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~~~GL 1833 (2096)
+|.-+-+...+|.. |.||+|. +|||||+.+.|++++|+++|+++. .+|.+.+|.|+|++.+.|+
T Consensus 1027 ~pv~~p~~~~~gvs~~~~~~~~~q~~~iIyK~-gDLRQDQLVLQmIrLMDrLLKkEn----LDLKLTPYRVLATG~dsGL 1101 (1374)
T PTZ00303 1027 APVTSPVTAVNGVSPESLHDSLPQECMFLYKR-ENVERDQLMCISSRLLQMLLSSEI----GNAEMLDYSVLPLSCDSGL 1101 (1374)
T ss_pred cceeeeeeccCCcCccccccccchheeEEEec-CcHHHHHHHHHHHHHHHHHHHhcC----CCccccceEEEeccCCccc
Confidence 77788888889988 9999995 699999999999999999999986 5899999999999999999
Q ss_pred eEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHHHHHhhCCChhHHHHHH
Q 000134 1834 VEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRAR 1913 (2096)
Q Consensus 1834 IEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf~~~f~~p~~w~~~R 1913 (2096)
||.|++. ++.+|... .+.+||.. .++ ...
T Consensus 1102 IEfVps~-tLAsI~~~--------------------------------------------~Il~YLr~--~~t----~~~ 1130 (1374)
T PTZ00303 1102 IEKAEGR-ELSNLDNM--------------------------------------------DIASYVLY--RGT----RSC 1130 (1374)
T ss_pred EEEecch-HHHHhhhh--------------------------------------------HHHHHHHh--cCc----HHH
Confidence 9999974 56555321 01123321 222 125
Q ss_pred HHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCCCCCCCCCCccccHHHHHhhcC
Q 000134 1914 VAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMIDGLGI 1984 (2096)
Q Consensus 1914 ~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l~~pE~VPFRLT~nmv~~mG~ 1984 (2096)
.+|++|+|.+|+++||||+||||.+||||+ .+|+++|||||++|+....-+++-.-|-|+-..|..++|.
T Consensus 1131 ~NFi~S~AGYsViTYILgIgDRHngNILId-~dGhLfHIDFGFILg~rtfkeKl~~s~vR~D~~l~eav~~ 1200 (1374)
T PTZ00303 1131 INFLASAKLFLLLNYIFSIGDRHKGNVLIG-TNGALLHIDFRFIFSEKTFVEKLARSTVRIDDAFLAAVEQ 1200 (1374)
T ss_pred HHHHHHHHHHHHHHHHhccCcccCCceeEc-CCCCEEEEecceeecCchhhhccCCCceehhHHHHHHHHH
Confidence 799999999999999999999999999999 5999999999999998765566777899999999887654
No 38
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=99.88 E-value=5.6e-23 Score=210.75 Aligned_cols=103 Identities=30% Similarity=0.541 Sum_probs=98.2
Q ss_pred hhhhhHHHHHHHHHHhhhhhcC---CCChHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHhcCCCcchhhhHHHHH
Q 000134 488 LPGFLRNHFVGLLNSIDRKMLH---AEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHF 564 (2096)
Q Consensus 488 ~~~fl~~~~LGil~~~~~~l~~---~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL~~~~L~~~~l~~W~~ 564 (2096)
+++||++|||||+++|++++.+ +.+..+|+++|+||++||+++|+||++++||||||||+||+.++|++.|++||++
T Consensus 1 ~~~fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~ 80 (107)
T PF08064_consen 1 IADFLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIPELREEALSCWNC 80 (107)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHH
Confidence 4799999999999999999987 5678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCcchhhHHHHHHHHhhhccc
Q 000134 565 FIEQLSRVSPSSTKHVISQVFAALIPFLE 593 (2096)
Q Consensus 565 fv~~L~~~~~~~l~~ll~~i~~~lip~~~ 593 (2096)
||++|++ ++|+|++++|+++++|+|+
T Consensus 81 fi~~L~~---~~l~~ll~~~~~~l~~~~~ 106 (107)
T PF08064_consen 81 FIKTLDE---EDLGPLLDQIFAILLPLWD 106 (107)
T ss_pred HHHHCCH---HHHHHHHHHHHHHHHHhcc
Confidence 9999964 8999999999999999997
No 39
>PF02260 FATC: FATC domain; InterPro: IPR003152 The FATC domain is found at the C-terminal end of the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding; PDB: 2KIT_A 1W1N_A 2KIO_A.
Probab=99.26 E-value=1.1e-12 Score=104.81 Aligned_cols=32 Identities=56% Similarity=1.085 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHHHHhCcchhhhcCCcccCCC
Q 000134 2065 PLAVEGQARRLIAEAVSHKNLGKMYIWWMPWF 2096 (2096)
Q Consensus 2065 ~lsv~~qV~~LI~~Atd~~nL~~My~gW~Pwl 2096 (2096)
++||++||++||++|||++|||+||+||+|||
T Consensus 2 ~lsv~~qV~~LI~~At~~~nLa~my~GW~pw~ 33 (33)
T PF02260_consen 2 PLSVEQQVDELISEATDPENLARMYIGWMPWW 33 (33)
T ss_dssp -S-STHHHHHHHHHHHHHHHHHHHCTSS-TT-
T ss_pred CCCHHHHHHHHHHHHcCHHHHHHHhcchhccC
Confidence 78999999999999999999999999999997
No 40
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=98.65 E-value=4.6e-06 Score=123.03 Aligned_cols=563 Identities=13% Similarity=0.068 Sum_probs=313.6
Q ss_pred CCHHHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhcc-CChhH
Q 000134 1041 IPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKS-LSLQD 1119 (2096)
Q Consensus 1041 Ip~~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~-~sl~~ 1119 (2096)
+|...+....-.|..++.++++.|.++-... ....++.+..+..++.+.|...|+...... ...+.
T Consensus 1019 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~si~t~ls~~~~~~~~~~~~~~~~~~~~~~~~~l 1085 (2105)
T COG5032 1019 LPSLSIGFYESLCSFLAKLLHDEELYFFPLL-------------FVSSLETLLSVNYHINQLDLRPNILKHFGSFVRFQL 1085 (2105)
T ss_pred chhhhhhHHHHHHHHHHHHhHHHHHHhcccc-------------hHHHHHHHHhhhhhhhhhhhccCcchhhhhhhHHhh
Confidence 5555555788899999999999999875321 135678888888889999888875333221 11222
Q ss_pred HHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHh--hhhhccChhhhhhHhHHHHHHHHhcC
Q 000134 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHV--DGLISRIPQYKKTWCMQGVQAAWRLG 1197 (2096)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~--~gl~~~~p~~~~~~~~~~vEAAWrlg 1197 (2096)
+-..+++.++|.+++.-|...............+.++|....|.|+.....+ ++.....+.. .-..+...-|+|-.|
T Consensus 1086 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~r-~~~~~~~~~~~~~~~ 1164 (2105)
T COG5032 1086 KPHLVKYLQRWYEALNRYFELLSKGDRLFAISFTKLRNVDALGKLELYSSLAEIDMFLSLHRRR-KLLETLVATAYEQVG 1164 (2105)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhhhHHHHHHHHHHHHHHhhhhccCcch-hhhhHHHHHHHHHHH
Confidence 2678899999999999999877765355666789999999999998754433 3333333211 223345667899999
Q ss_pred ChhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHH-HHHHHHhhhhhhcc-chhhHHhhhHHHH
Q 000134 1198 RWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKI-GVSKQVLIAPLAAA-GMDSYTRAYPFIV 1275 (2096)
Q Consensus 1198 ~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i-~~aR~~l~~~Lsa~-~~eSy~r~y~~l~ 1275 (2096)
.|+....+.+.+... ..+..|...+ .......++........ ..++..+..++... ..++|.+++-...
T Consensus 1165 ~~~~~q~~~e~~~~k-------~~~~~~~~s~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~i~~~~~w~~a~~~~~ 1235 (2105)
T COG5032 1165 EWYKAQQLYEVAQRK-------ARSKEFPFSL--QYLYWHINDIDCADKLQSVLAELSLVTGISELLLEESWRRALFSNI 1235 (2105)
T ss_pred hHHHHHHHHHHHhhh-------cccccCchhh--HHHHHcccchhhHhhhhhhhhhcccccchhhhccchhHHHHHhhhH
Confidence 999998887765421 0222333221 23344455555444443 34566677777776 4569999998889
Q ss_pred HhhhhhHHHHHHHhhhccccccccCCCChHH--HHHHHHHHHHHhhh---ccCChhhhhhHHHHHHhhcCcCCCCchhHH
Q 000134 1276 KLHLLQELEDFHAILVNDSFLEKSFLPSDLK--FSKLMANWENRLKY---TQPSLWAREPLLAFRRMVFGASGLGAEVGN 1350 (2096)
Q Consensus 1276 kLH~L~ELee~~~~~~~~~~~~~~~~~~~~~--~~~l~~~W~~RL~~---~~~~~~~~e~iLslRr~vl~~~~~~~~~~~ 1350 (2096)
+.....|++++........ .....- .....+.|+.+++. +...+..+.-....+-.+..+. +..+
T Consensus 1236 ~~~~~~~~~e~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~ 1305 (2105)
T COG5032 1236 KDSLESELEEIIDGMYKSN------EDFGALMLLSLSAELWDKILEGRSSCSKSIKLSLNIWLDLSIVVSPK----DEPE 1305 (2105)
T ss_pred HhhhhhhhhHHhhhhhhcc------cchHHHHHHHHHHhccchhhcchhhhhHHHHHHHHHHHHHhhhcCHh----hhhh
Confidence 9999999999887432110 011111 33456689999988 6666665544433333333333 3347
Q ss_pred HHHHHHHHHHHcC-ChHHHHHHHHHHh---h-----------cCCChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccc
Q 000134 1351 CWLQYAKLCRLAG-HYETATRAILEAQ---A-----------SGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEV 1415 (2096)
Q Consensus 1351 ~WL~~AklARKag-~~~~A~~all~a~---~-----------~~~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~ 1415 (2096)
.|.++++.|++.+ +.......+.+.. + ..+|...+..-+..|+......+..........++..
T Consensus 1306 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 1384 (2105)
T COG5032 1306 LFIKFVELCEASSIRSKLLEKNIQELLEKLEEIKSPLGTLRDRLPPPWALLDLKRLLATWRQNAFLRINPELLPLLSSL- 1384 (2105)
T ss_pred HHHHHHHHHhhhhHHHHhcchhHHHHHhccccccchhhhhhhcCCCCchhhhhhhhhhHHHHhhhhhhchhhccccchh-
Confidence 8999999999999 3333333333221 1 1123444444455666554443333222211111000
Q ss_pred ccccccccccccCCCCCCCCCccccccc-chhchhHHHHHHHH-HHHH---HHh-CCCCHHHHHHHHHHHHHhccchHHH
Q 000134 1416 VGSTAISSITSLSLVPLNPLPVLSNTQT-LNEKRDIAKTLLLY-SRWI---HYT-GQKQKEDVITLYSRVRELQPMWEKG 1489 (2096)
Q Consensus 1416 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~Aka~Lll-akWl---~~~-~~~~~~~i~~~Y~~a~~l~~~weK~ 1489 (2096)
.+....+ ...+..+... ..... ...-...|+.+... +.|. .-. -..+...+...|..+..+...|.++
T Consensus 1385 ~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 1458 (2105)
T COG5032 1385 LNLQSSS-----LSKQLVSRGS-SESAISINSFASVARKHFLPDNQLKKIYQLSNILISEAFLLLRYLLLCRLGRRELKA 1458 (2105)
T ss_pred hhccchh-----ccccccccch-hhhhHHHHHHHHHHHHhcCcHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhHHHHH
Confidence 0000000 0000000000 00000 00000112222111 2222 211 1233455566777777777788888
Q ss_pred HHH-HHhhhHHHHHHHHhhhhhccc-CCcchhhhhchHHHHHHHHHHhhccCCcchhhhHHHHHHhhhhcCccccccCCC
Q 000134 1490 YFY-MAKYCDDVLVDARKRQEENSE-IGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSS 1567 (2096)
Q Consensus 1490 ~~~-la~y~d~l~~~~~~~~e~~~~-~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~ 1567 (2096)
++. |+.-....+.+-.. .... -|..-+ .......+.....+....+.-..+..+|.+.+|...+...
T Consensus 1459 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~------ 1527 (2105)
T COG5032 1459 GLNVWNLTNLELFSDIQE---SEFFEWGKNLK--LLSIIPPIEEIFLSNALSCYLQVKDLLKKLNLFELLGSLL------ 1527 (2105)
T ss_pred HHHhhcccchhHHHHHHH---HHHHHhhhhhH--HhccCCchhHHHHhhhccchHHHHHHHHhhHHHHHhhhhh------
Confidence 887 66655544322111 0000 000000 0011112222333333344445578899999998877521
Q ss_pred ChhhhHhHHHHHHHHHHhhcCCCCCchhhhhhHHhhhccccCchHHHHHHHHHHHHHHHhchhhHHHHHHHhhcCCChhH
Q 000134 1568 SNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSR 1647 (2096)
Q Consensus 1568 ~~~~~~~~~~~v~~~~~~~~~~iP~~~wl~~lPQLisRl~h~~~~v~~~l~~il~kv~~~yPqq~lw~l~~~~~S~~~~R 1647 (2096)
..++......+.+.. ...|+..+||+.+++..........+..++.++++.|||+..+++.+..++....+
T Consensus 1528 ---~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~a~~~~L~~~~~s~~~~~ 1598 (2105)
T COG5032 1528 ---SAKDAAGSYYKNFHI------FDLEISVIPFIPQLLSSLSLLDLNSAQSLLSKIGKEHPQALVFTLRSAIESTALSK 1598 (2105)
T ss_pred ---hHHHHHHhhhhhccc------ccccccccchhhhhhhhcchhHHHHHHHHHHhhhhhchhhhhhhhhHHHHHhhhhh
Confidence 112222222222222 22255555666655555555568889999999999999999999998888777766
Q ss_pred HHHHHHHHHHHHhcCC
Q 000134 1648 REAAAEIIQAAKKGSA 1663 (2096)
Q Consensus 1648 ~~~~~~Il~~~~~~~~ 1663 (2096)
...+..+....+.+.+
T Consensus 1599 e~~~~~~~~~~~~~~~ 1614 (2105)
T COG5032 1599 ESVALSLENKSRTHDP 1614 (2105)
T ss_pred HhHHHHHhhhhhcCCh
Confidence 6666566655554433
No 41
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=0.0011 Score=89.54 Aligned_cols=474 Identities=18% Similarity=0.243 Sum_probs=252.1
Q ss_pred HHHHHHHhhcccCccchhhHHHHHHHHHHccCC----chhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhh
Q 000134 148 LLNIYFEFLYDESSEEVQLSCVRVIRRILVHGT----RDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVL 223 (2096)
Q Consensus 148 ~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~----~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~ 223 (2096)
+-+.++.++......+|+--+-.-+||++--+. .++...-+++.+.| +...+...||.++|.++..+-++-+
T Consensus 37 ~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~---~~~E~~~~vr~k~~dviAeia~~~l- 112 (1075)
T KOG2171|consen 37 LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEI---IQSETEPSVRHKLADVIAEIARNDL- 112 (1075)
T ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH---HHhccchHHHHHHHHHHHHHHHhcc-
Confidence 455677788887788887333333444443333 23333344445455 7788999999999999999775555
Q ss_pred hhhccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhH---HHHHHHHHHhhCCCCcchHHH
Q 000134 224 SSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHF---LFLLILLVEQLDNPHVTVRMN 300 (2096)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~---~~~l~~Li~~L~~~n~~v~~~ 300 (2096)
++ +|.+ .+..+.+ -+...|++++|+.+..+..+- ..++...- --.+-++...++-++..||..
T Consensus 113 -------~e--~WPe--ll~~L~q-~~~S~~~~~rE~al~il~s~~--~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~ 178 (1075)
T KOG2171|consen 113 -------PE--KWPE--LLQFLFQ-STKSPNPSLRESALLILSSLP--ETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVA 178 (1075)
T ss_pred -------cc--chHH--HHHHHHH-HhcCCCcchhHHHHHHHHhhh--hhhccccchhHHHHHHHHHHhccCCcchHHHH
Confidence 33 4544 2223334 445567779999988877763 22233222 234455777888888889999
Q ss_pred HHHHHHHHhhhhcccccccccchhhhhhhhhhHHHHHHhcCchHHHHHHHHHHhCCChHHHHHhhcccccchhhhccccC
Q 000134 301 ASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVKKMIPAVLPKLVVSQQDN 380 (2096)
Q Consensus 301 A~~~i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~rp~~~~~~~e~llg~~~~~fL~~~~~~~LP~LVl~~~~~ 380 (2096)
|.+-.-..+..+. ..+..++.|+. ++ -. .-.++|.++-..+.|
T Consensus 179 a~rA~~a~~~~~~---------------------------~~~~~~~~~~~-ll----P~-----~l~vl~~~i~~~d~~ 221 (1075)
T KOG2171|consen 179 AVRALGAFAEYLE---------------------------NNKSEVDKFRD-LL----PS-----LLNVLQEVIQDGDDD 221 (1075)
T ss_pred HHHHHHHHHHHhc---------------------------cchHHHHHHHH-Hh----HH-----HHHHhHhhhhccchH
Confidence 9999888766652 11112222221 00 00 001233333333221
Q ss_pred --hhHHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhc---cccHHHH--HHHHHHHhhhcCCChH------HHHHHhhHH
Q 000134 381 --DQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALH---QADERRL--LSALEFYCIQTGSDNQ------EIFAAALPA 447 (2096)
Q Consensus 381 --~~~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~---~~~~~~~--~~~l~~~~~~~~~~~~------~~~~~~~~~ 447 (2096)
..+.+.+.+++.. ..+++.+.+..|+.+-+- ..+-++- --+|.|+....+.-++ .+....+|.
T Consensus 222 ~a~~~l~~l~El~e~----~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~ 297 (1075)
T KOG2171|consen 222 AAKSALEALIELLES----EPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPV 297 (1075)
T ss_pred HHHHHHHHHHHHHhh----chHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHH
Confidence 1122344444442 234445555555555441 1111111 1233333333222111 111222222
Q ss_pred HHHHHHHhhcC---------CCchh--HhhhhcchhHHHHHHhhhccCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHH
Q 000134 448 LLDELICFVDG---------GDSDE--INERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQ 516 (2096)
Q Consensus 448 ~l~eLl~~~~~---------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k 516 (2096)
++. ..+...+ -|.|+ ++.+ ...+++..+|.-+.|...++.+++ .+. .++.+.+..+|
T Consensus 298 ~l~-~mte~~~D~ew~~~d~~ded~~~~~~~--~A~~~lDrlA~~L~g~~v~p~~~~--------~l~-~~l~S~~w~~R 365 (1075)
T KOG2171|consen 298 LLA-MMTEEEDDDEWSNEDDLDEDDEETPYR--AAEQALDRLALHLGGKQVLPPLFE--------ALE-AMLQSTEWKER 365 (1075)
T ss_pred HHH-hcCCcccchhhccccccccccccCcHH--HHHHHHHHHHhcCChhhehHHHHH--------HHH-HHhcCCCHHHH
Confidence 221 1111111 11111 1111 234666666655555554443322 233 45566678888
Q ss_pred HHHHHHHHHHHHHhccccccchhhHHHHHHHHhcCC--CcchhhhHHHHHHHHHhccCCCcchhhHHH-----HHHHHhh
Q 000134 517 KQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKE--SLQCEGLSVLHFFIEQLSRVSPSSTKHVIS-----QVFAALI 589 (2096)
Q Consensus 517 ~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL~~~--~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~-----~i~~~li 589 (2096)
+-+|.+|+.+-+=|+.++..-+|+|+.....+|+.| ..|..||.+-.-|-. ++.|.++ ++...++
T Consensus 366 ~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~st--------dl~p~iqk~~~e~l~~aL~ 437 (1075)
T KOG2171|consen 366 HAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMST--------DLQPEIQKKHHERLPPALI 437 (1075)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhh--------hhcHHHHHHHHHhccHHHH
Confidence 999999999999999999999999999999999754 578888777554444 4444443 3444555
Q ss_pred hccccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCChhhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCCh
Q 000134 590 PFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENL 669 (2096)
Q Consensus 590 p~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~~l~~en~ 669 (2096)
..++... .+......|..++++.-.--++.+..| +|.+-+ + .|..-.++.++
T Consensus 438 ~~ld~~~-~~rV~ahAa~al~nf~E~~~~~~l~pY---------Ld~lm~--~----------------~l~~L~~~~~~ 489 (1075)
T KOG2171|consen 438 ALLDSTQ-NVRVQAHAAAALVNFSEECDKSILEPY---------LDGLME--K----------------KLLLLLQSSKP 489 (1075)
T ss_pred HHhcccC-chHHHHHHHHHHHHHHHhCcHHHHHHH---------HHHHHH--H----------------HHHHHhcCCch
Confidence 5555442 233334455566665533234555522 232210 0 34444567788
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhcccC
Q 000134 670 NVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALG 740 (2096)
Q Consensus 670 ~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IG 740 (2096)
.|+.++++.+...=..-++.+.. ....++-.|.......+. .+...++-.+-+|+|.||
T Consensus 490 ~v~e~vvtaIasvA~AA~~~F~p-----------Y~d~~Mp~L~~~L~n~~~-~d~r~LrgktmEcisli~ 548 (1075)
T KOG2171|consen 490 YVQEQAVTAIASVADAAQEKFIP-----------YFDRLMPLLKNFLQNADD-KDLRELRGKTMECLSLIA 548 (1075)
T ss_pred hHHHHHHHHHHHHHHHHhhhhHh-----------HHHHHHHHHHHHHhCCCc-hhhHHHHhhHHHHHHHHH
Confidence 99999999988754443333222 223333333322221110 112456667778999887
No 42
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.27 E-value=0.021 Score=79.36 Aligned_cols=152 Identities=11% Similarity=0.019 Sum_probs=112.7
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHh--ccCC----h
Q 000134 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLH--KSLS----L 1117 (2096)
Q Consensus 1044 ~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~--~~~s----l 1117 (2096)
..++.+....+.|.+|+.+++.-+..... ....+-.+..+|...++++....+...- ..+. .
T Consensus 129 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 196 (899)
T TIGR02917 129 ALRGLAYLGLGQLELAQKSYEQALAIDPR------------SLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDAL 196 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC------------ChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHH
Confidence 36788899999999999999987654221 1234667889999999999988886531 1221 1
Q ss_pred hHHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcC
Q 000134 1118 QDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLG 1197 (2096)
Q Consensus 1118 ~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg 1197 (2096)
......+...|++++|..+|+++++..|++......+..|+...|+++......+.+....|.... .........+..|
T Consensus 197 ~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 275 (899)
T TIGR02917 197 LLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPL-AHYLKALVDFQKK 275 (899)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCch-HHHHHHHHHHHhc
Confidence 123445788999999999999999999999988889999999999999988888776665554322 2223445678899
Q ss_pred ChhhHHHhhcc
Q 000134 1198 RWDLMDEYLSG 1208 (2096)
Q Consensus 1198 ~Wd~l~~~l~~ 1208 (2096)
+|+.-.+.+..
T Consensus 276 ~~~~A~~~~~~ 286 (899)
T TIGR02917 276 NYEDARETLQD 286 (899)
T ss_pred CHHHHHHHHHH
Confidence 99876665544
No 43
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.18 E-value=0.0073 Score=83.90 Aligned_cols=409 Identities=12% Similarity=0.052 Sum_probs=229.0
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH--hccCC----h
Q 000134 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----L 1117 (2096)
Q Consensus 1044 ~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~--~~~~s----l 1117 (2096)
..++......+.|..|+.+++..+...+. ....+..|..+|...++++....+... ...+. .
T Consensus 469 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 536 (899)
T TIGR02917 469 NLLGAIYLGKGDLAKAREAFEKALSIEPD------------FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAI 536 (899)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCCC------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHH
Confidence 45788888999999999999987653211 123466788999999999987777542 11121 2
Q ss_pred hHHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcC
Q 000134 1118 QDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLG 1197 (2096)
Q Consensus 1118 ~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg 1197 (2096)
......+...|++++|..+|+++++..|++......+.+++...|+++......+......|.....|. .-..+....|
T Consensus 537 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~ 615 (899)
T TIGR02917 537 LALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWL-MLGRAQLAAG 615 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHHcC
Confidence 233455678999999999999999999999888888999999999999888888776665554433333 3355667889
Q ss_pred ChhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHHHHh
Q 000134 1198 RWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKL 1277 (2096)
Q Consensus 1198 ~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~kL 1277 (2096)
+|+.-.++....-.. .+.+......+|.++. ..++.....+.++.+.. ......+.+.........
T Consensus 616 ~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~l~~~~~~- 681 (899)
T TIGR02917 616 DLNKAVSSFKKLLAL------QPDSALALLLLADAYA--VMKNYAKAITSLKRALE-----LKPDNTEAQIGLAQLLLA- 681 (899)
T ss_pred CHHHHHHHHHHHHHh------CCCChHHHHHHHHHHH--HcCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHH-
Confidence 998876665543211 0112223334554443 34554444433332221 111112222222222222
Q ss_pred hhhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHH
Q 000134 1278 HLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAK 1357 (2096)
Q Consensus 1278 H~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~Ak 1357 (2096)
..+.+++..+..... .. . ....... .+..+.-.-..++ .+-+=.++++ +.... . ...+...+.
T Consensus 682 --~~~~~~A~~~~~~~~--~~-~-~~~~~~~----~~~~~~~~~~g~~--~~A~~~~~~~-~~~~~---~-~~~~~~l~~ 744 (899)
T TIGR02917 682 --AKRTESAKKIAKSLQ--KQ-H-PKAALGF----ELEGDLYLRQKDY--PAAIQAYRKA-LKRAP---S-SQNAIKLHR 744 (899)
T ss_pred --cCCHHHHHHHHHHHH--hh-C-cCChHHH----HHHHHHHHHCCCH--HHHHHHHHHH-HhhCC---C-chHHHHHHH
Confidence 223333333322100 00 0 0001100 0111111111111 1111122221 21111 1 146777788
Q ss_pred HHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCC
Q 000134 1358 LCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPL 1435 (2096)
Q Consensus 1358 lARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1435 (2096)
+.++.|+++.|...+.++.... ++.+....|.++...|+..+|+..++++++..|.
T Consensus 745 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~---------------------- 802 (899)
T TIGR02917 745 ALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD---------------------- 802 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC----------------------
Confidence 8888888888888777766543 3446667778888888888888888877652110
Q ss_pred CcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCC
Q 000134 1436 PVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIG 1515 (2096)
Q Consensus 1436 ~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~~~~~~e~~~~~g 1515 (2096)
.+.++..+|......|+ .+.++.|.++.+..|.-...+..+|..+... |
T Consensus 803 --------------~~~~~~~l~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------g 851 (899)
T TIGR02917 803 --------------NAVVLNNLAWLYLELKD---PRALEYAEKALKLAPNIPAILDTLGWLLVEK--------------G 851 (899)
T ss_pred --------------CHHHHHHHHHHHHhcCc---HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc--------------C
Confidence 02233444444444444 4477888888888887777777666654221 0
Q ss_pred cchhhhhchHHHHHHHHHHhhccCCcchhhhHHHHHHhhhhcC
Q 000134 1516 PSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFG 1558 (2096)
Q Consensus 1516 ~~~~~~~~~l~~ai~~Y~~sl~~g~~~~~q~lpRlLtLWl~~g 1558 (2096)
-...|+..|-+++..++.. -.....+...++..|
T Consensus 852 --------~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~g 885 (899)
T TIGR02917 852 --------EADRALPLLRKAVNIAPEA-AAIRYHLALALLATG 885 (899)
T ss_pred --------CHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHHcC
Confidence 1235777888888777652 223333444444444
No 44
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.86 E-value=0.02 Score=83.05 Aligned_cols=345 Identities=13% Similarity=0.085 Sum_probs=179.9
Q ss_pred HHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhh--hHh-----------H
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKK--TWC-----------M 1187 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~--~~~-----------~ 1187 (2096)
...+...|++++|...|+++++..|++.+.+..+-.++...|+++....+.+......|+... .|. .
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 456778999999999999999999999998888889999999999988887766554443211 111 1
Q ss_pred HHHHHHHhcCChhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhH
Q 000134 1188 QGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSY 1267 (2096)
Q Consensus 1188 ~~vEAAWrlg~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy 1267 (2096)
...+++...|+++.-.+++..+-.. .+.+..-...+|.++ ...++..+..+..+++... .+. .
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~------~P~~~~a~~~Lg~~~--~~~g~~~eA~~~y~~aL~~-----~p~----~ 418 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQV------DNTDSYAVLGLGDVA--MARKDYAAAERYYQQALRM-----DPG----N 418 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHh-----CCC----C
Confidence 1234667889998877766544221 011122233455444 4455555444433332211 111 1
Q ss_pred HhhhHHHHHhhhhhHHHHHHHhhhccccccccCCCChHHHHHHH-----HHHHHHhhhccCChhhhhhHHHHHHhhcCcC
Q 000134 1268 TRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLM-----ANWENRLKYTQPSLWAREPLLAFRRMVFGAS 1342 (2096)
Q Consensus 1268 ~r~y~~l~kLH~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~ 1342 (2096)
..++..+..++.-...+++..++..... .......... ..|..+-......=+..+-+=.+++++ .
T Consensus 419 ~~a~~~L~~l~~~~~~~~A~~~l~~l~~------~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al-~-- 489 (1157)
T PRK11447 419 TNAVRGLANLYRQQSPEKALAFIASLSA------SQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRL-A-- 489 (1157)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhCCH------HHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHH-H--
Confidence 1222223333322334444443321000 0000000000 001111110000001112222223322 1
Q ss_pred CCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccc-c
Q 000134 1343 GLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGS-T 1419 (2096)
Q Consensus 1343 ~~~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~-~ 1419 (2096)
..++....+...|.+..+.|+++.|...+.++.... .+......+.++...|+..+|+..|+.....-....... .
T Consensus 490 -~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~ 568 (1157)
T PRK11447 490 -LDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELA 568 (1157)
T ss_pred -hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHH
Confidence 122334566778888888888888888887776543 345566667777778888888887775422100000000 0
Q ss_pred -c------cccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHH
Q 000134 1420 -A------ISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFY 1492 (2096)
Q Consensus 1420 -~------~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~ 1492 (2096)
. ......+. .-.+.... .......+....+++.+|.|..+.|+ .++.++.|+++++..|....+++.
T Consensus 569 ~~l~~~~~l~~a~~l~-~~G~~~eA---~~~l~~~p~~~~~~~~La~~~~~~g~--~~~A~~~y~~al~~~P~~~~a~~~ 642 (1157)
T PRK11447 569 QRLQSDQVLETANRLR-DSGKEAEA---EALLRQQPPSTRIDLTLADWAQQRGD--YAAARAAYQRVLTREPGNADARLG 642 (1157)
T ss_pred HHHhhhHHHHHHHHHH-HCCCHHHH---HHHHHhCCCCchHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHH
Confidence 0 00000000 00000000 00000111123467788999887776 888999999999999999999999
Q ss_pred HHhhhH
Q 000134 1493 MAKYCD 1498 (2096)
Q Consensus 1493 la~y~d 1498 (2096)
+|..|.
T Consensus 643 la~~~~ 648 (1157)
T PRK11447 643 LIEVDI 648 (1157)
T ss_pred HHHHHH
Confidence 988763
No 45
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.85 E-value=0.042 Score=76.29 Aligned_cols=384 Identities=12% Similarity=0.080 Sum_probs=214.3
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHhc--cC-C---hhHHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHH
Q 000134 1086 DEDVSFLMEIYSFLDEPDGLSGLARLHK--SL-S---LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLL 1159 (2096)
Q Consensus 1086 ~~~~~~L~~IYa~LdEpDgl~Gi~~~~~--~~-s---l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~ 1159 (2096)
+..+.-...|+.-.++.+.+..++.... .+ + .......+...|+|.+|...|+++++..|++.+...++..++.
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~ 94 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLA 94 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3567788899999999999998876422 11 1 2223456899999999999999999999999999999999999
Q ss_pred hccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHcc
Q 000134 1160 NMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKK 1239 (2096)
Q Consensus 1160 ~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~ 1239 (2096)
..|+++..+.+.+.+....|+... +..+ ..+....|+.+.-...+...-.. .+.+......++.++. ..+
T Consensus 95 ~~g~~~eA~~~l~~~l~~~P~~~~-~~~l-a~~l~~~g~~~~Al~~l~~al~~------~P~~~~~~~~la~~l~--~~~ 164 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGAPDKAN-LLAL-AYVYKRAGRHWDELRAMTQALPR------APQTQQYPTEYVQALR--NNR 164 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHH-HHHH-HHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHH--HCC
Confidence 999999999999888877776655 4433 33455677776554444432210 0112233334444432 233
Q ss_pred CchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHHHHhhh----------------hhHHHHHHHhhhccccccccCCCC
Q 000134 1240 DHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLHL----------------LQELEDFHAILVNDSFLEKSFLPS 1303 (2096)
Q Consensus 1240 d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~kLH~----------------L~ELee~~~~~~~~~~~~~~~~~~ 1303 (2096)
......+.++. ....|=..... .......++++.. +.+++.+..... + .+.
T Consensus 165 ~~e~Al~~l~~---~~~~p~~~~~l--~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~------~--~p~ 231 (765)
T PRK10049 165 LSAPALGAIDD---ANLTPAEKRDL--EADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWH------D--NPD 231 (765)
T ss_pred ChHHHHHHHHh---CCCCHHHHHHH--HHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcc------c--CCc
Confidence 33322222221 00000000000 0001111111111 111111111100 0 000
Q ss_pred hHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC--
Q 000134 1304 DLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAP-- 1381 (2096)
Q Consensus 1304 ~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~~-- 1381 (2096)
........+-.|+-.+...-+..+-+-.+++ ++......+.....|+ +.+....|+++.|...+.++.+..+.
T Consensus 232 --~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~-ll~~~~~~P~~a~~~l--a~~yl~~g~~e~A~~~l~~~l~~~p~~~ 306 (765)
T PRK10049 232 --ATADYQRARIDRLGALLARDRYKDVISEYQR-LKAEGQIIPPWAQRWV--ASAYLKLHQPEKAQSILTELFYHPETIA 306 (765)
T ss_pred --cchHHHHHHHHHHHHHHHhhhHHHHHHHHHH-hhccCCCCCHHHHHHH--HHHHHhcCCcHHHHHHHHHHhhcCCCCC
Confidence 0001111122222222111122333333444 2222211233455675 77888999999999998887654421
Q ss_pred ----hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHH
Q 000134 1382 ----NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLY 1457 (2096)
Q Consensus 1382 ----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~Lll 1457 (2096)
......+..+-+.|+..+|+..++.+....|..... .... ... .+.....+++++
T Consensus 307 ~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~------~~~~---~~~------------p~~~~~~a~~~~ 365 (765)
T PRK10049 307 DLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRL------YGSP---TSI------------PNDDWLQGQSLL 365 (765)
T ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEee------cCCC---CCC------------CCchHHHHHHHH
Confidence 233334445668899999999999887654322100 0000 000 011224566777
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhc
Q 000134 1458 SRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLH 1537 (2096)
Q Consensus 1458 akWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~ 1537 (2096)
+..+...|+ .++.++.|.++....|.....++.+|.-+... | -...++..|-+++.
T Consensus 366 a~~l~~~g~--~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~--------------g--------~~~~A~~~l~~al~ 421 (765)
T PRK10049 366 SQVAKYSND--LPQAEMRARELAYNAPGNQGLRIDYASVLQAR--------------G--------WPRAAENELKKAEV 421 (765)
T ss_pred HHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc--------------C--------CHHHHHHHHHHHHh
Confidence 777766665 78888999999999999998999888865322 0 12356777777777
Q ss_pred cCCcc
Q 000134 1538 RGHKN 1542 (2096)
Q Consensus 1538 ~g~~~ 1542 (2096)
.-+..
T Consensus 422 l~Pd~ 426 (765)
T PRK10049 422 LEPRN 426 (765)
T ss_pred hCCCC
Confidence 66554
No 46
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.80 E-value=0.031 Score=81.08 Aligned_cols=124 Identities=13% Similarity=0.026 Sum_probs=92.5
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH--hccCChh----
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLSLQ---- 1118 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~--~~~~sl~---- 1118 (2096)
..+.+...-+.|..|+-+++..++..+. ..+.+..|..+|...++.|........ ...++..
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~------------~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~ 341 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPK------------DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDK 341 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhH
Confidence 4477788889999999999998765321 124567888999999999988777542 2222111
Q ss_pred --------------HHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChh
Q 000134 1119 --------------DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ 1180 (2096)
Q Consensus 1119 --------------~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~ 1180 (2096)
.+...+...|++++|..+|+++++..|++...+.++=.++...|+++....+.+..+...|+
T Consensus 342 ~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~ 417 (1157)
T PRK11447 342 WESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG 417 (1157)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 12234568899999999999999999998888888888999999999888877766655554
No 47
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.72 E-value=0.018 Score=77.95 Aligned_cols=86 Identities=14% Similarity=0.180 Sum_probs=62.9
Q ss_pred hhHHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhc
Q 000134 1117 LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRL 1196 (2096)
Q Consensus 1117 l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrl 1196 (2096)
+.++...+.+.|++++|..+|++++...|+ ...+.++-.|+..+|+|+..+...+..+...|+..+.+. ....+.-.+
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~-~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALN-RRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHHc
Confidence 334566678889999999999999998886 345667788999999999888877766666666544433 345566778
Q ss_pred CChhhHHH
Q 000134 1197 GRWDLMDE 1204 (2096)
Q Consensus 1197 g~Wd~l~~ 1204 (2096)
|+|+.-..
T Consensus 208 g~~~eA~~ 215 (615)
T TIGR00990 208 GKYADALL 215 (615)
T ss_pred CCHHHHHH
Confidence 88876543
No 48
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.60 E-value=0.059 Score=73.51 Aligned_cols=332 Identities=13% Similarity=0.014 Sum_probs=192.3
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH--hccCC----hh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----LQ 1118 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~--~~~~s----l~ 1118 (2096)
..+.+..+-|.+..|+-.++..+.....+ .+.+..|.-.+-..+++|........ ...|+ ..
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~------------~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~ 114 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNG------------RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVL 114 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCc------------hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 45778888999999999999877654321 23455666666678888877776542 11222 22
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCC
Q 000134 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGR 1198 (2096)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~ 1198 (2096)
.....+...|++++|...|+++++..|++...+..+.+++..+|+++......+.+....|+....+.. .-+.-+.|+
T Consensus 115 ~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~--~~~l~~~g~ 192 (656)
T PRK15174 115 LVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIAT--CLSFLNKSR 192 (656)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHcCC
Confidence 234567889999999999999999999999888889999999999998777666554444433222211 223556788
Q ss_pred hhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHHHHhh
Q 000134 1199 WDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLH 1278 (2096)
Q Consensus 1199 Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~kLH 1278 (2096)
++.-.+.....-.. ...........++.++ ...++..+ .+...+..+.. . .+.. ..+ .
T Consensus 193 ~~eA~~~~~~~l~~-----~~~~~~~~~~~l~~~l--~~~g~~~e---A~~~~~~al~~--~---p~~~-~~~------~ 250 (656)
T PRK15174 193 LPEDHDLARALLPF-----FALERQESAGLAVDTL--CAVGKYQE---AIQTGESALAR--G---LDGA-ALR------R 250 (656)
T ss_pred HHHHHHHHHHHHhc-----CCCcchhHHHHHHHHH--HHCCCHHH---HHHHHHHHHhc--C---CCCH-HHH------H
Confidence 87766554432110 0000111111122222 12333332 23222222110 0 1110 000 0
Q ss_pred hhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHHH
Q 000134 1279 LLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKL 1358 (2096)
Q Consensus 1279 ~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~Akl 1358 (2096)
.|..+ +... + ...+.. .+-+-.+++++ .. .++....|...+.+
T Consensus 251 ~Lg~~-----l~~~------G---~~~eA~-------------------~~A~~~~~~Al-~l---~P~~~~a~~~lg~~ 293 (656)
T PRK15174 251 SLGLA-----YYQS------G---RSREAK-------------------LQAAEHWRHAL-QF---NSDNVRIVTLYADA 293 (656)
T ss_pred HHHHH-----HHHc------C---CchhhH-------------------HHHHHHHHHHH-hh---CCCCHHHHHHHHHH
Confidence 00000 0000 0 000000 01122222221 11 12345678999999
Q ss_pred HHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCC
Q 000134 1359 CRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLP 1436 (2096)
Q Consensus 1359 ARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1436 (2096)
..+.|+++.|...+.++....+ +.+..-.+..+++.|+..+|+..+++.+...|.
T Consensus 294 l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~----------------------- 350 (656)
T PRK15174 294 LIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV----------------------- 350 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-----------------------
Confidence 9999999999999999887753 456777899999999999999999988653211
Q ss_pred cccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchH
Q 000134 1437 VLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWE 1487 (2096)
Q Consensus 1437 ~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~we 1487 (2096)
.+.++..+|.-+...| ..++.++.|+++++.+|+..
T Consensus 351 -------------~~~~~~~~a~al~~~G--~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 351 -------------TSKWNRYAAAALLQAG--KTSEAESVFEHYIQARASHL 386 (656)
T ss_pred -------------chHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhChhhc
Confidence 0112233343333444 47888999999999988643
No 49
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.59 E-value=0.015 Score=76.99 Aligned_cols=325 Identities=16% Similarity=0.098 Sum_probs=179.4
Q ss_pred HHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhccCChhHHHH----
Q 000134 1047 ARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELL---- 1122 (2096)
Q Consensus 1047 A~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~~sl~~qil---- 1122 (2096)
|.-.+--|.+.+|...++.-|++.+.. ...+..|.+||-+.++..-..-.+-+-..++..+.-+
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqdp~~------------~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~l 213 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQDPRN------------PIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRL 213 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCccc------------hhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 333444599999999999988864321 2358899999999976654443332211122222222
Q ss_pred --HhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChh----hhhhHhH---------
Q 000134 1123 --SNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ----YKKTWCM--------- 1187 (2096)
Q Consensus 1123 --~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~----~~~~~~~--------- 1187 (2096)
..++.|+|..|--||.++++..|++.........=++++|++...+.--.-+....|. +..+...
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITH 293 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHh
Confidence 2489999999999999999999999877766666677888887554433334444441 1111000
Q ss_pred HHHHHHHhcCChhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHH--------------
Q 000134 1188 QGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQ-------------- 1253 (2096)
Q Consensus 1188 ~~vEAAWrlg~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~-------------- 1253 (2096)
..-|.| |..++.++..... ..+.-+.++. |-+.|.++........|...|.
T Consensus 294 ~~~e~a-----~~~le~~~s~~~~---------~~~~ed~ni~-ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~ 358 (895)
T KOG2076|consen 294 NERERA-----AKALEGALSKEKD---------EASLEDLNIL-AELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE 358 (895)
T ss_pred hHHHHH-----HHHHHHHHhhccc---------cccccHHHHH-HHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh
Confidence 011444 4467766652111 1111222333 2222333333333344443333
Q ss_pred ---Hhhhhhhccch-hhHHhhh-HHHHHhhhhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhh
Q 000134 1254 ---VLIAPLAAAGM-DSYTRAY-PFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAR 1328 (2096)
Q Consensus 1254 ---~l~~~Lsa~~~-eSy~r~y-~~l~kLH~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~ 1328 (2096)
.--.++...+. .||.=-. -.++-|+-|.|.|....+.... ..+... ..+.-.+.....+=+-..+
T Consensus 359 ~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l--~~~n~~--~~d~~dL~~d~a~al~~~~------ 428 (895)
T KOG2076|consen 359 RRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFL--VEDNVW--VSDDVDLYLDLADALTNIG------ 428 (895)
T ss_pred hccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHH--HHhcCC--hhhhHHHHHHHHHHHHhcc------
Confidence 00111222222 2554333 6677778887777655443200 001000 1111122222222121111
Q ss_pred hhHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHH
Q 000134 1329 EPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQ 1406 (2096)
Q Consensus 1329 e~iLslRr~vl~~~~~~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~ 1406 (2096)
.+=++++=..--...-...-+-.|.+.|+.-+.-|+++.|..+-..+..+.+ -++.|--|-++-..|++++|+.+|++
T Consensus 429 ~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 429 KYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred cHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 2222222111000111112266899999999999999999988888776643 46888889999999999999999998
Q ss_pred Hh
Q 000134 1407 NL 1408 (2096)
Q Consensus 1407 ~i 1408 (2096)
.+
T Consensus 509 ~~ 510 (895)
T KOG2076|consen 509 II 510 (895)
T ss_pred cc
Confidence 65
No 50
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.56 E-value=0.25 Score=65.92 Aligned_cols=447 Identities=17% Similarity=0.204 Sum_probs=230.1
Q ss_pred hcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhh-HHHHHHHHHHhhhc-CChhHHHHHHHHHHHHHhhh-cccc
Q 000134 200 LNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNE-LKLLDVIKLAFTAA-DDPLILETLLESTAELMMAV-DVHS 276 (2096)
Q Consensus 200 ~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~d~~i~eTll~~~~~i~~~~-~~~~ 276 (2096)
.+..+-.|+-.+-.+..-+.|-- = |++ ..-+.+- ..|+-++.++.... +++.|+=-++..+|++-.+- ..=.
T Consensus 95 ~s~keq~rdissi~Lktvi~nl~--P-~~~--~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~ 169 (1233)
T KOG1824|consen 95 LSGKEQLRDISSIGLKTVIANLP--P-SSS--SFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLP 169 (1233)
T ss_pred ccchhhhccHHHHHHHHHHhcCC--C-ccc--cccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCc
Confidence 56666777776666665331100 0 111 1112222 45777778777774 44558877787777763211 0011
Q ss_pred hhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccchhhhhhhhhhHHHHHHhcCchHHHHHHHHHHhCC
Q 000134 277 QHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGV 356 (2096)
Q Consensus 277 e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~rp~~~~~~~e~llg~ 356 (2096)
+-....+.+|+.||+.+-..||-.|..-|-.+|-..+.-.| ..+.+.+.++|-.+++|+..=.
T Consensus 170 ~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly-----------~~li~~Ll~~L~~~~q~~~~rt------ 232 (1233)
T KOG1824|consen 170 NFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLY-----------VELIEHLLKGLSNRTQMSATRT------ 232 (1233)
T ss_pred chHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHH-----------HHHHHHHHhccCCCCchHHHHH------
Confidence 23445777899999999999999999999888666543222 2334557788888887744311
Q ss_pred ChHHHHHhhcccccchhhhccccChhHHHHHHHHHHHcCCC-------chhHHhhhHHHHHHHHhccccHHHH-HHHHHH
Q 000134 357 ETEELVKKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTD-------MVPLIVTWIPKVLAFALHQADERRL-LSALEF 428 (2096)
Q Consensus 357 ~~~~fL~~~~~~~LP~LVl~~~~~~~~~~~i~~ia~~~~~~-------~~~l~~~~~~~Ila~ll~~~~~~~~-~~~l~~ 428 (2096)
-++.|.+|+++.+.. ..|++.+++-+| +.+++++ ..||+-
T Consensus 233 --------------------------~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~------e~~dDELrE~~lQa 280 (1233)
T KOG1824|consen 233 --------------------------YIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKI------EEDDDELREYCLQA 280 (1233)
T ss_pred --------------------------HHHHHHHHHHHhcchhhcccchhhHHHHHHhccc------ccCcHHHHHHHHHH
Confidence 123456666655543 234444444333 3344444 667776
Q ss_pred HhhhcCCChHHHHHHhhHHHHHHHHHhh------cCCC-chhHhhhhcchhHHHHHHhhhccCCCChhhhhHHHHHHHHH
Q 000134 429 YCIQTGSDNQEIFAAALPALLDELICFV------DGGD-SDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLN 501 (2096)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~l~eLl~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~ 501 (2096)
+..+..-.++++.. ..|.++.-++-++ ..++ .|+.. . ...+. .++=
T Consensus 281 le~fl~rcp~ei~p-~~pei~~l~l~yisYDPNy~yd~~eDed~-----------~---~~ed~---eDde--------- 333 (1233)
T KOG1824|consen 281 LESFLRRCPKEILP-HVPEIINLCLSYISYDPNYNYDTEEDEDA-----------M---FLEDE---EDDE--------- 333 (1233)
T ss_pred HHHHHHhChhhhcc-cchHHHHHHHHHhccCCCCCCCCccchhh-----------h---hhhcc---ccch---------
Confidence 66555555555554 4566664333221 1111 11110 0 00000 0000
Q ss_pred HhhhhhcCCCChHHH--HHHHHHHHHHHHHhccccccchhhHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCC-----
Q 000134 502 SIDRKMLHAEDLSLQ--KQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSP----- 574 (2096)
Q Consensus 502 ~~~~~l~~~~~~~~k--~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL~~~~L~~~~l~~W~~fv~~L~~~~~----- 574 (2096)
-++.-...+|+.+| |.+.+++..||-=-...+..|...+.--|.+-+...| ...+..+.++++..|..+.+
T Consensus 334 -~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkERE-EnVk~dvf~~yi~ll~qt~~~~~~~ 411 (1233)
T KOG1824|consen 334 -QDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKERE-ENVKADVFHAYIALLKQTRPVIEVL 411 (1233)
T ss_pred -hccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHh-hhHHHHHHHHHHHHHHcCCCCcccc
Confidence 01111223566655 5678899888854333444444333333444442111 24445555555555543222
Q ss_pred --------cchh---hHHHH----HHHHhhhccccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccC-----CCCCCh
Q 000134 575 --------SSTK---HVISQ----VFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEF-----PLLPSI 634 (2096)
Q Consensus 575 --------~~l~---~ll~~----i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~l-----p~Lp~i 634 (2096)
+... .+|+. |+.++-+.+. +.+-+++.....+|..||.--++.+.+|+..+ +.|++-
T Consensus 412 ~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr---~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~Dk 488 (1233)
T KOG1824|consen 412 ADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLR---EKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDK 488 (1233)
T ss_pred cCchhhhccCCccchHHHHhhhHHHHHHHHHHHh---hccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCc
Confidence 0011 34443 3444444443 22334678899999999999999999998776 445553
Q ss_pred hhhHHH--------HHHHHHhcCC--CCHHHHHH-HHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCch
Q 000134 635 AALTEV--------NKAIQEARGP--MTLKDQLL-AAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLD 703 (2096)
Q Consensus 635 p~l~~v--------~~~l~~~r~~--~~l~~~l~-~~~~~l~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~ 703 (2096)
...+.. ...|...... -+....+. ..+-.++..=..|..+||--..++.+.- +.+-.+-.++-.+
T Consensus 489 Ssss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvi----rpl~~~~~~d~~~ 564 (1233)
T KOG1824|consen 489 SSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVI----RPLQPPSSFDASP 564 (1233)
T ss_pred cchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHh----cccCCCccCCCCh
Confidence 333222 1222111100 01111221 1222333323455666666555554332 2222222222235
Q ss_pred hHHHHHHHHHHHhhhhccccchhhHHHHHHHhhccc
Q 000134 704 VLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGAL 739 (2096)
Q Consensus 704 vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~I 739 (2096)
.+.++..+-+.-... +..++++++++-.|+|.+
T Consensus 565 ~v~~m~~~tl~rL~a---~d~DqeVkeraIscmgq~ 597 (1233)
T KOG1824|consen 565 YVKTMYDCTLQRLKA---TDSDQEVKERAISCMGQI 597 (1233)
T ss_pred hHHHHHHHHHHHHhc---ccccHHHHHHHHHHHHHH
Confidence 677777776655433 345689999999999976
No 51
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.45 E-value=0.18 Score=68.34 Aligned_cols=50 Identities=14% Similarity=0.295 Sum_probs=42.1
Q ss_pred HHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHh
Q 000134 1122 LSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHV 1171 (2096)
Q Consensus 1122 l~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~ 1171 (2096)
..|.+.|+|++|..+|+.+++..|++......+-.|+..+|+|+..+...
T Consensus 168 ~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~ 217 (615)
T TIGR00990 168 ACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDL 217 (615)
T ss_pred HHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34678899999999999999999999888888888999999998765433
No 52
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.32 E-value=0.094 Score=71.57 Aligned_cols=309 Identities=11% Similarity=0.003 Sum_probs=171.2
Q ss_pred HHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCCh
Q 000134 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRW 1199 (2096)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~W 1199 (2096)
=++.+-..|++.+|++.|+.+++..|++.+....+..|+...|+++..+...+.+....|+...-+. ....+.-..|++
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~-~la~~l~~~g~~ 126 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVL-LVASVLLKSKQY 126 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHH-HHHHHHHHcCCH
Confidence 3566778888888888888888888888877777777888888888887777777666665443332 234556677888
Q ss_pred hhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHHHHhhh
Q 000134 1200 DLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLHL 1279 (2096)
Q Consensus 1200 d~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~kLH~ 1279 (2096)
+.-.+.+...-.. .+.+......+++++ ...++..+.. ...+..+ ...+...+.+. .+..+..
T Consensus 127 ~~Ai~~l~~Al~l------~P~~~~a~~~la~~l--~~~g~~~eA~---~~~~~~~--~~~P~~~~a~~----~~~~l~~ 189 (656)
T PRK15174 127 ATVADLAEQAWLA------FSGNSQIFALHLRTL--VLMDKELQAI---SLARTQA--QEVPPRGDMIA----TCLSFLN 189 (656)
T ss_pred HHHHHHHHHHHHh------CCCcHHHHHHHHHHH--HHCCChHHHH---HHHHHHH--HhCCCCHHHHH----HHHHHHH
Confidence 7765555443210 011222334445443 2334433322 2222111 11111111111 1112333
Q ss_pred hhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHHHH
Q 000134 1280 LQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLC 1359 (2096)
Q Consensus 1280 L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~AklA 1359 (2096)
..+++++....... ... .......... ...+ .....=+..+-+-.+++++ .. ..+....|...+.+.
T Consensus 190 ~g~~~eA~~~~~~~--l~~-~~~~~~~~~~----~l~~--~l~~~g~~~eA~~~~~~al-~~---~p~~~~~~~~Lg~~l 256 (656)
T PRK15174 190 KSRLPEDHDLARAL--LPF-FALERQESAG----LAVD--TLCAVGKYQEAIQTGESAL-AR---GLDGAALRRSLGLAY 256 (656)
T ss_pred cCCHHHHHHHHHHH--Hhc-CCCcchhHHH----HHHH--HHHHCCCHHHHHHHHHHHH-hc---CCCCHHHHHHHHHHH
Confidence 34455544433210 000 0000000000 0000 0000011223333344432 21 234467888999999
Q ss_pred HHcCChHH----HHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCC
Q 000134 1360 RLAGHYET----ATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLN 1433 (2096)
Q Consensus 1360 RKag~~~~----A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 1433 (2096)
...|+++. |...+.+|....+ +.+....|.++...|+..+|+..+++++...| .
T Consensus 257 ~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-------------------~- 316 (656)
T PRK15174 257 YQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-------------------D- 316 (656)
T ss_pred HHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-------------------C-
Confidence 99999985 6777777776643 45778889999999999999999999875211 1
Q ss_pred CCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhh
Q 000134 1434 PLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497 (2096)
Q Consensus 1434 ~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~ 1497 (2096)
.+.++..+|.-+...|+ .++.+..|.++.+.+|.....++..|..+
T Consensus 317 ----------------~~~a~~~La~~l~~~G~--~~eA~~~l~~al~~~P~~~~~~~~~a~al 362 (656)
T PRK15174 317 ----------------LPYVRAMYARALRQVGQ--YTAASDEFVQLAREKGVTSKWNRYAAAAL 362 (656)
T ss_pred ----------------CHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 02234445555555554 67888999999999987655555555433
No 53
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.31 E-value=0.095 Score=66.43 Aligned_cols=275 Identities=15% Similarity=0.087 Sum_probs=157.6
Q ss_pred HHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccCh--h-hhhhHhHHHHHHHHhcC
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIP--Q-YKKTWCMQGVQAAWRLG 1197 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p--~-~~~~~~~~~vEAAWrlg 1197 (2096)
.+.+...|++++|...|+.+++..|++...+..+-.++...|+++......+.+....+ . ........-..+.+..|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 44566889999999999999999999998888999999999999988887776544311 1 11111222345677889
Q ss_pred ChhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHHHHh
Q 000134 1198 RWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKL 1277 (2096)
Q Consensus 1198 ~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~kL 1277 (2096)
+++.-.+++...-.. .+........++.++ ...++..+..+..+.+... . ....... +..+
T Consensus 122 ~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~--~~~g~~~~A~~~~~~~~~~-----~---~~~~~~~---~~~~ 182 (389)
T PRK11788 122 LLDRAEELFLQLVDE------GDFAEGALQQLLEIY--QQEKDWQKAIDVAERLEKL-----G---GDSLRVE---IAHF 182 (389)
T ss_pred CHHHHHHHHHHHHcC------CcchHHHHHHHHHHH--HHhchHHHHHHHHHHHHHh-----c---CCcchHH---HHHH
Confidence 998877766554321 011112222333332 3344443333322221110 0 0000000 0000
Q ss_pred hhhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHH
Q 000134 1278 HLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAK 1357 (2096)
Q Consensus 1278 H~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~Ak 1357 (2096)
...+- ..+... .. ..+....++.-++. .......|+..++
T Consensus 183 --~~~la--~~~~~~---------~~---~~~A~~~~~~al~~------------------------~p~~~~~~~~la~ 222 (389)
T PRK11788 183 --YCELA--QQALAR---------GD---LDAARALLKKALAA------------------------DPQCVRASILLGD 222 (389)
T ss_pred --HHHHH--HHHHhC---------CC---HHHHHHHHHHHHhH------------------------CcCCHHHHHHHHH
Confidence 00000 000000 00 00111111111110 0112456888999
Q ss_pred HHHHcCChHHHHHHHHHHhhcCCC---hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCC
Q 000134 1358 LCRLAGHYETATRAILEAQASGAP---NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNP 1434 (2096)
Q Consensus 1358 lARKag~~~~A~~all~a~~~~~~---~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 1434 (2096)
+..+.|+++.|...+.++....+. .+...-+..+...|+.++|+..++.++...| .
T Consensus 223 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p-------------------~-- 281 (389)
T PRK11788 223 LALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP-------------------G-- 281 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------------C--
Confidence 999999999999999998876543 2345567889999999999999998765211 0
Q ss_pred CCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHH
Q 000134 1435 LPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYM 1493 (2096)
Q Consensus 1435 ~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~l 1493 (2096)
. . ....+++.+...|+ .++..+.|.++++..|+....+..+
T Consensus 282 ------------~---~-~~~~la~~~~~~g~--~~~A~~~l~~~l~~~P~~~~~~~l~ 322 (389)
T PRK11788 282 ------------A---D-LLLALAQLLEEQEG--PEAAQALLREQLRRHPSLRGFHRLL 322 (389)
T ss_pred ------------c---h-HHHHHHHHHHHhCC--HHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 0 0 12556666666664 7788999999999999776443333
No 54
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.25 E-value=0.19 Score=63.61 Aligned_cols=118 Identities=12% Similarity=-0.010 Sum_probs=86.3
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH-hccCCh------
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL-HKSLSL------ 1117 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~-~~~~sl------ 1117 (2096)
..+..+..++.|..|+-+++.-++.. |. ....+..|..+|...++.+...-+... ...+..
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al~~~-----p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 107 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEMLKVD-----PE-------TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRL 107 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcC-----cc-------cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHH
Confidence 35778889999999999999987642 21 124567788899999998877666542 222211
Q ss_pred ---hHHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhh
Q 000134 1118 ---QDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGL 1174 (2096)
Q Consensus 1118 ---~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl 1174 (2096)
..-+..|.+.|++++|..+|+.+++..|.+......+..++...|+|+......+.+
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 167 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERL 167 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 122456788899999999999999888887777778888888888888766655544
No 55
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=2 Score=56.10 Aligned_cols=102 Identities=13% Similarity=0.108 Sum_probs=69.8
Q ss_pred HHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhh-
Q 000134 193 KCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMA- 271 (2096)
Q Consensus 193 ~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~- 271 (2096)
+||..+ .|+++.+|-.-|-.|.-++ +-++..++ -..|..++..+. ..|....|-.+-++..||.-
T Consensus 94 ~~l~~l-gd~~~lIr~tvGivITTI~---------s~~~~~~w---pelLp~L~~~L~-s~d~n~~EgA~~AL~KIcEDs 159 (885)
T KOG2023|consen 94 ECLHGL-GDASPLIRATVGIVITTIA---------STGGLQHW---PELLPQLCELLD-SPDYNTCEGAFGALQKICEDS 159 (885)
T ss_pred HHHhhc-cCchHHHHhhhhheeeeee---------cccccccc---hhHHHHHHHHhc-CCcccccchhHHHHHHHHhhh
Confidence 487767 9999999988877666543 43333333 556777887444 45555788888888777632
Q ss_pred -hc----ccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHH
Q 000134 272 -VD----VHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKS 308 (2096)
Q Consensus 272 -~~----~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l 308 (2096)
.. ...+-+++.+=.++++..|++|.+|+-|..=+...
T Consensus 160 a~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~ 201 (885)
T KOG2023|consen 160 AQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQF 201 (885)
T ss_pred HHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhhe
Confidence 21 22244556667799999999999999998766544
No 56
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.02 E-value=0.24 Score=63.54 Aligned_cols=63 Identities=17% Similarity=0.134 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCh-HHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASGAPN-VHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~~~~~-~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
+.....+..+++|.++|.++.|..++..+....+.. ..++.|.++++.|++++|.++.++++.
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 335578899999999999999999999998876555 458999999999999999999998865
No 57
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.00 E-value=0.2 Score=66.29 Aligned_cols=170 Identities=19% Similarity=0.211 Sum_probs=108.6
Q ss_pred HHHhhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcc
Q 000134 152 YFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDEN 231 (2096)
Q Consensus 152 ~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~ 231 (2096)
.|..|=+...+.|.++| ++|.+++.=...+.+ ..+...-|..+|.|++..||.-++++|....+++..
T Consensus 43 lf~~L~~~~~e~v~~~~-~iL~~~l~~~~~~~l---~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~-------- 110 (503)
T PF10508_consen 43 LFDCLNTSNREQVELIC-DILKRLLSALSPDSL---LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEG-------- 110 (503)
T ss_pred HHHHHhhcChHHHHHHH-HHHHHHHhccCHHHH---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHH--------
Confidence 66677777777776655 999999997775543 233445677788999999999999999887633321
Q ss_pred cccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHH-HHHHHHhhCCCCcchHHHHHHHHHHHhh
Q 000134 232 ASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFL-LILLVEQLDNPHVTVRMNASRLIRKSCF 310 (2096)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~-l~~Li~~L~~~n~~v~~~A~~~i~~l~~ 310 (2096)
....-....++..+-..+ .-.|..|.+..+..+..|.+-...-.++|..- +-.|..-+.++|.++|.-+|..+.++|+
T Consensus 111 ~~~~~~~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~ 189 (503)
T PF10508_consen 111 AAQLLVDNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIAS 189 (503)
T ss_pred HHHHhcCccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHh
Confidence 011112233555565545 34566699999999999855222121222212 3346666777799999999999999987
Q ss_pred hhcccccccccchhhhhhhhhhHHHHHHhcC
Q 000134 311 FHLKGGCELLVSKAVLICNELFDYLSVRLAS 341 (2096)
Q Consensus 311 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~ 341 (2096)
+....- ... ....+++.+++.+.+
T Consensus 190 ~S~~~~-----~~~--~~sgll~~ll~eL~~ 213 (503)
T PF10508_consen 190 HSPEAA-----EAV--VNSGLLDLLLKELDS 213 (503)
T ss_pred cCHHHH-----HHH--HhccHHHHHHHHhcC
Confidence 763311 010 011256666666666
No 58
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=96.91 E-value=1.4 Score=62.59 Aligned_cols=355 Identities=8% Similarity=-0.034 Sum_probs=201.5
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhccCChhHHHHHh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSN 1124 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~~sl~~qil~~ 1124 (2096)
.++.-+++-|-+.+|=..+++-+...++ +..+....+.|+.+|..-+-+|+-.-+..+-..++...+-.
T Consensus 381 q~~~~~~~~~~~~~a~~~~~~~~~~~~~---------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-- 449 (987)
T PRK09782 381 QLTWQLMQNGQSREAADLLLQRYPFQGD---------ARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQ-- 449 (987)
T ss_pred HHHHHHHHcccHHHHHHHHHHhcCCCcc---------cccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHH--
Confidence 4566678888899999999887653211 11134567799999988777666666554422222222221
Q ss_pred HhhcCHHHHHHH---HHHHHccCCC--chhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHH-HHHHHhcCC
Q 000134 1125 KKSGNWAEVFTS---CEQALQMEPT--SVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQG-VQAAWRLGR 1198 (2096)
Q Consensus 1125 E~~G~W~~A~~~---YE~~Lq~~p~--~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~-vEAAWrlg~ 1198 (2096)
-.|+..+|... +..++...|+ +...+..+-.|+.. |+++..+..........|+.. ..++ ..+.-..|+
T Consensus 450 -~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~---~~L~lA~al~~~Gr 524 (987)
T PRK09782 450 -WQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW---QHRAVAYQAYQVED 524 (987)
T ss_pred -HHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH---HHHHHHHHHHHCCC
Confidence 24455454444 4444555666 67777777788887 777666654444444445422 1221 222346788
Q ss_pred hhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHHHHhh
Q 000134 1199 WDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLH 1278 (2096)
Q Consensus 1199 Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~kLH 1278 (2096)
++.-.+........ ++........| ...+..++.....+.+..+... . .+.+...+.....+.
T Consensus 525 ~eeAi~~~rka~~~-------~p~~~a~~~la--~all~~Gd~~eA~~~l~qAL~l-----~---P~~~~l~~~La~~l~ 587 (987)
T PRK09782 525 YATALAAWQKISLH-------DMSNEDLLAAA--NTAQAAGNGAARDRWLQQAEQR-----G---LGDNALYWWLHAQRY 587 (987)
T ss_pred HHHHHHHHHHHhcc-------CCCcHHHHHHH--HHHHHCCCHHHHHHHHHHHHhc-----C---CccHHHHHHHHHHHH
Confidence 87665554432210 01111122233 3334455554434333333221 0 111111000000000
Q ss_pred hhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHHH
Q 000134 1279 LLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKL 1358 (2096)
Q Consensus 1279 ~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~Akl 1358 (2096)
...+.+++ +-.+++++ .. .+. ...|...|.+
T Consensus 588 ~~Gr~~eA--------------------------------------------l~~~~~AL-~l---~P~-~~a~~~LA~~ 618 (987)
T PRK09782 588 IPGQPELA--------------------------------------------LNDLTRSL-NI---APS-ANAYVARATI 618 (987)
T ss_pred hCCCHHHH--------------------------------------------HHHHHHHH-Hh---CCC-HHHHHHHHHH
Confidence 00111111 11122221 11 112 4678999999
Q ss_pred HHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCC
Q 000134 1359 CRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLP 1436 (2096)
Q Consensus 1359 ARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1436 (2096)
.++.|+++.|..++.+|....+ +.+....+-.+...|+..+|+..++++++..|.
T Consensus 619 l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~----------------------- 675 (987)
T PRK09782 619 YRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD----------------------- 675 (987)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----------------------
Confidence 9999999999999999988764 457778888999999999999999998763221
Q ss_pred cccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCc
Q 000134 1437 VLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGP 1516 (2096)
Q Consensus 1437 ~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~~~~~~e~~~~~g~ 1516 (2096)
-+.++.-+|.-+...|+ .++....|++|+++.|......+..|......+
T Consensus 676 -------------~~~a~~nLA~al~~lGd--~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~--------------- 725 (987)
T PRK09782 676 -------------DPALIRQLAYVNQRLDD--MAATQHYARLVIDDIDNQALITPLTPEQNQQRF--------------- 725 (987)
T ss_pred -------------CHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHH---------------
Confidence 13345556655555555 788899999999999987766666655443222
Q ss_pred chhhhhchHHHHHHHHHHhhccCCc
Q 000134 1517 SEKRWWFYVPDVLLFYAKGLHRGHK 1541 (2096)
Q Consensus 1517 ~~~~~~~~l~~ai~~Y~~sl~~g~~ 1541 (2096)
+...+.+.|-+...+...
T Consensus 726 -------~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 726 -------NFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred -------HHHHHHHHHHHHhhcCcc
Confidence 234566777777666654
No 59
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.89 E-value=0.69 Score=59.44 Aligned_cols=410 Identities=17% Similarity=0.222 Sum_probs=221.3
Q ss_pred cCCCHHHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChH-HHHHH-HHHhccCC
Q 000134 1039 SAIPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPD-GLSGL-ARLHKSLS 1116 (2096)
Q Consensus 1039 ~~Ip~~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpD-gl~Gi-~~~~~~~s 1116 (2096)
.+.+...||.+-++-+.|..|.-|.-.-.++...+ .+.+-.|-.||.+..+.| +..|. ++++..+.
T Consensus 47 ~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~------------~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q 114 (966)
T KOG4626|consen 47 GSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTN------------TERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQ 114 (966)
T ss_pred cchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCc------------ccceeeehhhhhcccchhhhhhhhhhhhhccch
Confidence 45567789999999999999999888766543211 123446778999998888 44554 34555544
Q ss_pred hhHH----HHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhh-----------
Q 000134 1117 LQDE----LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQY----------- 1181 (2096)
Q Consensus 1117 l~~q----il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~----------- 1181 (2096)
..+. .-.+..-|+.++|+..|+.+++..|+.++.++|+--||..-|......+....-+.-.|+.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHH
Confidence 3332 2345677999999999999999999999999999999887776554333222111222210
Q ss_pred --------hhhHhHHHHHH------HHh-cC--------ChhhHHHhhcccCccCccccCCCCC-cchhHHHHHHHHHHH
Q 000134 1182 --------KKTWCMQGVQA------AWR-LG--------RWDLMDEYLSGADEEGLLCSSSESN-ASFDMDVAKILQAMM 1237 (2096)
Q Consensus 1182 --------~~~~~~~~vEA------AWr-lg--------~Wd~l~~~l~~~~~~gl~~~~~~~~-~~f~~~l~kaL~al~ 1237 (2096)
.+.-+.-++|+ ||. || -|.-+..|-.... -+++ ..-.+++|..+..++
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--------ldP~f~dAYiNLGnV~ke~~ 266 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--------LDPNFLDAYINLGNVYKEAR 266 (966)
T ss_pred HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--------CCCcchHHHhhHHHHHHHHh
Confidence 00011112221 331 11 1444433322211 0111 122345555555444
Q ss_pred ccCchhHHHHHH-HHHHHhhhhhhccch-----hhHHhhhHHHHHhhhhhHHHHHHHhhhccccccccCCCChHHHHHHH
Q 000134 1238 KKDHFSVSDKIG-VSKQVLIAPLAAAGM-----DSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLM 1311 (2096)
Q Consensus 1238 ~~d~~~f~~~i~-~aR~~l~~~Lsa~~~-----eSy~r~y~~l~kLH~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~ 1311 (2096)
.-| +.+. -.|.....+..+..- .-|.+ .+ |+.++..-.+--. .+ +.+..-.
T Consensus 267 ~~d-----~Avs~Y~rAl~lrpn~A~a~gNla~iYyeq---------G~--ldlAI~~Ykral~-~~------P~F~~Ay 323 (966)
T KOG4626|consen 267 IFD-----RAVSCYLRALNLRPNHAVAHGNLACIYYEQ---------GL--LDLAIDTYKRALE-LQ------PNFPDAY 323 (966)
T ss_pred cch-----HHHHHHHHHHhcCCcchhhccceEEEEecc---------cc--HHHHHHHHHHHHh-cC------CCchHHH
Confidence 322 1111 112222222221110 01111 11 1111111000000 00 0111112
Q ss_pred HHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHH
Q 000134 1312 ANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAK 1389 (2096)
Q Consensus 1312 ~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AK 1389 (2096)
.++..-|.-.++- -|-.=.--++ +. +....++..-..+.+-|..|.++.|.+--+.|....+ ..++=--|-
T Consensus 324 ~NlanALkd~G~V---~ea~~cYnka-L~---l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~ 396 (966)
T KOG4626|consen 324 NNLANALKDKGSV---TEAVDCYNKA-LR---LCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLAS 396 (966)
T ss_pred hHHHHHHHhccch---HHHHHHHHHH-HH---hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHH
Confidence 2222222222211 1100000010 10 1122344556778888888999888887777765532 234445567
Q ss_pred HHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCH
Q 000134 1390 LLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQK 1469 (2096)
Q Consensus 1390 LLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~ 1469 (2096)
++-++|+-.+||.+-+.++.- .+..|.++--+|.-+-+.|. .
T Consensus 397 i~kqqgnl~~Ai~~YkealrI------------------------------------~P~fAda~~NmGnt~ke~g~--v 438 (966)
T KOG4626|consen 397 IYKQQGNLDDAIMCYKEALRI------------------------------------KPTFADALSNMGNTYKEMGD--V 438 (966)
T ss_pred HHHhcccHHHHHHHHHHHHhc------------------------------------CchHHHHHHhcchHHHHhhh--H
Confidence 788888889999888887641 12335566666655555553 6
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcc--hhhhH
Q 000134 1470 EDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN--LFQAL 1547 (2096)
Q Consensus 1470 ~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~--~~q~l 1547 (2096)
++.+.-|..|++.+|....+|-.||.-|. | .| .+..||..|-.+|...+++ .++-+
T Consensus 439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~k----D----------sG--------ni~~AI~sY~~aLklkPDfpdA~cNl 496 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPTFAEAHSNLASIYK----D----------SG--------NIPEAIQSYRTALKLKPDFPDAYCNL 496 (966)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhhHHHHhh----c----------cC--------CcHHHHHHHHHHHccCCCCchhhhHH
Confidence 77889999999999999999988887653 1 11 3567999999999988764 44433
Q ss_pred H---HHHHhhhhcC
Q 000134 1548 P---RLLTLWFDFG 1558 (2096)
Q Consensus 1548 p---RlLtLWl~~g 1558 (2096)
. .++.-|.|+.
T Consensus 497 lh~lq~vcdw~D~d 510 (966)
T KOG4626|consen 497 LHCLQIVCDWTDYD 510 (966)
T ss_pred HHHHHHHhcccchH
Confidence 2 4455576654
No 60
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=96.73 E-value=3.5 Score=57.64 Aligned_cols=380 Identities=10% Similarity=-0.005 Sum_probs=205.2
Q ss_pred HHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH--hccCC----hhHH
Q 000134 1047 ARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----LQDE 1120 (2096)
Q Consensus 1047 A~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~--~~~~s----l~~q 1120 (2096)
.+.|..-|.+..|+-.++...... | .....+..|..+|...++.+...-.+.. ...+. ....
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~-----~-------~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 89 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHM-----Q-------LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGL 89 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-----C-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 356777889999998888765411 1 0123477889999999999887777653 12222 1123
Q ss_pred HHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChh
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWD 1200 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd 1200 (2096)
+..+-..|+.++|+..++++++..|++.. +..+-.++...|+++..+...+......|+....+..+ ..+.-..|.-+
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~l-a~~l~~~~~~e 167 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEY-VQALRNNRLSA 167 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHCCChH
Confidence 45667899999999999999999999988 77788888899999988888877777777654433332 33444555555
Q ss_pred hHHHhhcccCccCccccCCCCCc------chhHHHHHHHHHHHccCchhH---HHHHHHHHHHhhhhhhcc--chhhHHh
Q 000134 1201 LMDEYLSGADEEGLLCSSSESNA------SFDMDVAKILQAMMKKDHFSV---SDKIGVSKQVLIAPLAAA--GMDSYTR 1269 (2096)
Q Consensus 1201 ~l~~~l~~~~~~gl~~~~~~~~~------~f~~~l~kaL~al~~~d~~~f---~~~i~~aR~~l~~~Lsa~--~~eSy~r 1269 (2096)
.--+.+...... ++. .......++.......+...+ .+.++.... +....... ....|.+
T Consensus 168 ~Al~~l~~~~~~--------p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~-ll~~~~~~p~~~~~~~~ 238 (765)
T PRK10049 168 PALGAIDDANLT--------PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDA-LEALWHDNPDATADYQR 238 (765)
T ss_pred HHHHHHHhCCCC--------HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHH-HHhhcccCCccchHHHH
Confidence 322222221110 000 001111111110000111112 122222211 11111111 1123444
Q ss_pred hh-HHHHHhhhhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCC-ch
Q 000134 1270 AY-PFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLG-AE 1347 (2096)
Q Consensus 1270 ~y-~~l~kLH~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~-~~ 1347 (2096)
++ +.+..|-...+.+++........ ... ...+. ....|-..+..-..++ -+-+-.++++ +...... ..
T Consensus 239 a~~d~l~~Ll~~g~~~eA~~~~~~ll--~~~--~~~P~---~a~~~la~~yl~~g~~--e~A~~~l~~~-l~~~p~~~~~ 308 (765)
T PRK10049 239 ARIDRLGALLARDRYKDVISEYQRLK--AEG--QIIPP---WAQRWVASAYLKLHQP--EKAQSILTEL-FYHPETIADL 308 (765)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhh--ccC--CCCCH---HHHHHHHHHHHhcCCc--HHHHHHHHHH-hhcCCCCCCC
Confidence 32 11222222233444443332100 000 00011 0111211111111221 1122223442 2222111 01
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC------------C-----hHHHHHHHHHHHcCCchHHHHHHHHHhhc
Q 000134 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASGA------------P-----NVHMEKAKLLWSTRRSDGAIAELQQNLLN 1410 (2096)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~all~a~~~~~------------~-----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~ 1410 (2096)
....+...+....+.|+++.|...+.++....+ | .+..-.|.++-..|+..+|+..+++++..
T Consensus 309 ~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~ 388 (765)
T PRK10049 309 SDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN 388 (765)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 123455556666899999999999887765432 1 24567889999999999999999998763
Q ss_pred CCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHH
Q 000134 1411 KPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGY 1490 (2096)
Q Consensus 1411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~ 1490 (2096)
.| .+ ..+++.+|.-+...|+ .++.++.|++|.++.|.-...+
T Consensus 389 ~P-------------------~n-----------------~~l~~~lA~l~~~~g~--~~~A~~~l~~al~l~Pd~~~l~ 430 (765)
T PRK10049 389 AP-------------------GN-----------------QGLRIDYASVLQARGW--PRAAENELKKAEVLEPRNINLE 430 (765)
T ss_pred CC-------------------CC-----------------HHHHHHHHHHHHhcCC--HHHHHHHHHHHHhhCCCChHHH
Confidence 22 11 2245555555544554 7899999999999999987777
Q ss_pred HHHHhhh
Q 000134 1491 FYMAKYC 1497 (2096)
Q Consensus 1491 ~~la~y~ 1497 (2096)
+..|.-+
T Consensus 431 ~~~a~~a 437 (765)
T PRK10049 431 VEQAWTA 437 (765)
T ss_pred HHHHHHH
Confidence 7776643
No 61
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=96.61 E-value=2.8 Score=54.14 Aligned_cols=60 Identities=18% Similarity=-0.012 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHH--Hhhc-CCChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1350 NCWLQYAKLCRLAGHYETATRAILE--AQAS-GAPNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~all~--a~~~-~~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
......++++-+.|.++.|...+.+ +.+. +++......|.++|+.|++.+|.++.++++.
T Consensus 336 ~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 336 CINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5567889999999999999999995 4333 3445667899999999999999999998765
No 62
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.29 E-value=0.0075 Score=67.30 Aligned_cols=92 Identities=24% Similarity=0.280 Sum_probs=61.5
Q ss_pred HHHHHHHHHhhhhccccchhhHHHHHHHhhcccCccCcccccccccc-------c----c------cccc--cChhhHHH
Q 000134 707 TLISSLLRGCAEESRTVVGQKLKLVCADCLGALGAVDPAKVKGFSCQ-------R----F------KIEC--SDDDLIFE 767 (2096)
Q Consensus 707 ~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IGalDp~r~~~~~~~-------~----~------~~~~--~~~~f~~~ 767 (2096)
+|+..|++..+.. . +..+++.+.+|||.||||||-+....... + . .... +.++|...
T Consensus 10 ~LL~~L~~iLk~e-~---s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~y~~ 85 (160)
T PF11865_consen 10 ELLDILLNILKTE-Q---SQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEYYPT 85 (160)
T ss_pred HHHHHHHHHHHhC-C---CHHHHHHHHHHhhhccccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHHHHH
Confidence 5666666655543 2 26899999999999999999999732110 0 0 0111 45666666
Q ss_pred HHHHHHHHHHHcCCChhhHhHHHHHHHHHHHHcCC
Q 000134 768 LIDKHLARAFRAAPDTIIQDSAALAIQELLKIAGC 802 (2096)
Q Consensus 768 ll~~~Lv~af~s~~dt~~Q~~~A~AiQElLk~~~~ 802 (2096)
..-+.|.+.+.-.+-+..+..+..||-.+++..|+
T Consensus 86 vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~ 120 (160)
T PF11865_consen 86 VVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGL 120 (160)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCc
Confidence 55577888888888888777666666666655444
No 63
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.18 E-value=7.8 Score=51.50 Aligned_cols=171 Identities=19% Similarity=0.271 Sum_probs=101.4
Q ss_pred CChHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhh
Q 000134 511 EDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIP 590 (2096)
Q Consensus 511 ~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL~~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip 590 (2096)
.+...|+.++.+|+.+.....+....+..-++..|..+ + ....-.+|..+...+... |+.-+. ++..++.
T Consensus 352 ~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~----~-~~~~~~~~~~i~~ll~~~-~~~~~~----~l~~L~~ 421 (526)
T PF01602_consen 352 SDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEIS----G-DYVSNEIINVIRDLLSNN-PELREK----ILKKLIE 421 (526)
T ss_dssp --HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCT----G-GGCHCHHHHHHHHHHHHS-TTTHHH----HHHHHHH
T ss_pred cchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhc----c-ccccchHHHHHHHHhhcC-hhhhHH----HHHHHHH
Confidence 35668889999999988887544444444444444432 1 234557788877776542 222222 2333344
Q ss_pred ccccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCChhhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChh
Q 000134 591 FLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLN 670 (2096)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~~l~~en~~ 670 (2096)
+++... . ..+....=+++-|..+...+ .. ...+.++.++++...|+..
T Consensus 422 ~l~~~~-~-----~~~~~~~~wilGEy~~~~~~-------------------------~~-~~~~~~~~l~~~~~~~~~~ 469 (526)
T PF01602_consen 422 LLEDIS-S-----PEALAAAIWILGEYGELIEN-------------------------TE-SAPDILRSLIENFIEESPE 469 (526)
T ss_dssp HHTSSS-S-----HHHHHHHHHHHHHHCHHHTT-------------------------TT-HHHHHHHHHHHHHTTSHHH
T ss_pred HHHHhh-H-----HHHHHHHHhhhcccCCcccc-------------------------cc-cHHHHHHHHHHhhccccHH
Confidence 443221 1 23455555666665554432 11 3456677788888888999
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhccc
Q 000134 671 VRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGAL 739 (2096)
Q Consensus 671 Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~I 739 (2096)
|+.+.++.+.++..+..+ . .....++..++..|...+. +.+++..|-++++++
T Consensus 470 vk~~ilt~~~Kl~~~~~~-----------~--~~~~~i~~~~~~~~~~~s~---~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 470 VKLQILTALAKLFKRNPE-----------N--EVQNEILQFLLSLATEDSS---DPEVRDRAREYLRLL 522 (526)
T ss_dssp HHHHHHHHHHHHHHHSCS-----------T--THHHHHHHHHHCHHHHS-S---SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCc-----------h--hhHHHHHHHHHHHhccCCC---CHHHHHHHHHHHHHH
Confidence 999999999988754431 0 1233566666666663222 368999999998876
No 64
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.04 E-value=10 Score=52.92 Aligned_cols=291 Identities=17% Similarity=0.215 Sum_probs=163.5
Q ss_pred CCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhc---c---ccccchhhHHHHHHHHhcCCCcchhh
Q 000134 485 NEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIG---S---HLTTYVPKILVLLMHAINKESLQCEG 558 (2096)
Q Consensus 485 ~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g---~---~v~~~~pqI~a~L~~aL~~~~L~~~~ 558 (2096)
++.++.=+++|+.-+..-|..+|..+.+. .|.-++++++.++...- . +....+|.++-.|+..+...+ ...+
T Consensus 146 ~~~~~~~~~~~~~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d-~~~a 223 (1075)
T KOG2171|consen 146 PETFGNTLQPHLDDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGD-DDAA 223 (1075)
T ss_pred hhhhccccchhHHHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccc-hHHH
Confidence 34555667888888999999998776555 89999999999999983 2 566778999999999997554 2345
Q ss_pred hHHHHHHHHHhccCCCcchhhHHHHHHHHhhhccccCCCCchhhHHHHHHHHHHHHHHhHHHHHh---hcccC-------
Q 000134 559 LSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQ---HIHEF------- 628 (2096)
Q Consensus 559 l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~---~i~~l------- 628 (2096)
.++...|+..+. .+|.-+++++++|+..-+....... -...+|..|.+++-.+..--..+.+. +++.|
T Consensus 224 ~~~l~~l~El~e-~~pk~l~~~l~~ii~~~l~Ia~n~~-l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~ 301 (1075)
T KOG2171|consen 224 KSALEALIELLE-SEPKLLRPHLSQIIQFSLEIAKNKE-LENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAM 301 (1075)
T ss_pred HHHHHHHHHHHh-hchHHHHHHHHHHHHHHHHHhhccc-ccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHh
Confidence 666667766654 3577899999999998887775332 22346778888777765442222221 12221
Q ss_pred -CCCCChhhhHHHHHHHHHhcCCCCHHHHHHHHHhhccC-CC-hhHHHHHHHHHHHHHhhc-----HHHHHH-HHhccCC
Q 000134 629 -PLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNH-EN-LNVRYMVVCELSKLLKLK-----SEDVTA-LINGEAC 699 (2096)
Q Consensus 629 -p~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~~l~~-en-~~Vr~~aL~eL~~~L~~~-----~~~l~~-~~~~e~~ 699 (2096)
+.+.+-++..+-. .+.+--+. +....=...++|+.. -+ ..|....+..+..+|..- +..+.+ ...+|+.
T Consensus 302 mte~~~D~ew~~~d-~~ded~~~-~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc 379 (1075)
T KOG2171|consen 302 MTEEEDDDEWSNED-DLDEDDEE-TPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGC 379 (1075)
T ss_pred cCCcccchhhcccc-cccccccc-CcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHccc
Confidence 1111111110000 00000000 000000112222221 11 233444445555555421 111221 2334544
Q ss_pred CC--chhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhcccCccCcccccccccccccccccChhhHHHHHHHHHHHHH
Q 000134 700 SD--LDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALGAVDPAKVKGFSCQRFKIECSDDDLIFELIDKHLARAF 777 (2096)
Q Consensus 700 ~~--~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IGalDp~r~~~~~~~~~~~~~~~~~f~~~ll~~~Lv~af 777 (2096)
.+ .+.+.+++.-.+.+..+ ..++++.+|--|+|.+-. - +.-+-..+....+-..|+...
T Consensus 380 ~~~m~~~l~~Il~~Vl~~l~D-----phprVr~AA~naigQ~st----d----------l~p~iqk~~~e~l~~aL~~~l 440 (1075)
T KOG2171|consen 380 SDVMIGNLPKILPIVLNGLND-----PHPRVRYAALNAIGQMST----D----------LQPEIQKKHHERLPPALIALL 440 (1075)
T ss_pred HHHHHHHHHHHHHHHHhhcCC-----CCHHHHHHHHHHHHhhhh----h----------hcHHHHHHHHHhccHHHHHHh
Confidence 32 12334444444444443 247999999999997521 0 000111122333334466677
Q ss_pred HcCCChhhHhHHHHHHHHHHHHc
Q 000134 778 RAAPDTIIQDSAALAIQELLKIA 800 (2096)
Q Consensus 778 ~s~~dt~~Q~~~A~AiQElLk~~ 800 (2096)
-++.+++.|-.+|-|+=+++..|
T Consensus 441 d~~~~~rV~ahAa~al~nf~E~~ 463 (1075)
T KOG2171|consen 441 DSTQNVRVQAHAAAALVNFSEEC 463 (1075)
T ss_pred cccCchHHHHHHHHHHHHHHHhC
Confidence 77899999999999999998875
No 65
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=95.82 E-value=8 Score=58.00 Aligned_cols=465 Identities=15% Similarity=0.106 Sum_probs=239.7
Q ss_pred ccchhhHHHHHHHHHHccCCchh-hhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhh-hh-hhhhhccCcccccchh
Q 000134 161 SEEVQLSCVRVIRRILVHGTRDV-LLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQ-DT-VLSSLFLDENASSRSN 237 (2096)
Q Consensus 161 ~~~v~~~~~~~l~~il~h~~~~~-~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~ 237 (2096)
..++|...+.+|.-++.|+.... .+.. ..-+.+|-.+|.+++..+|..+++.++.+.. +. .-..+.+
T Consensus 417 ~~evQ~~Av~aL~~L~~~~~e~~~aIi~-~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIie--------- 486 (2102)
T PLN03200 417 TADVQEELIRALSSLCCGKGGLWEALGG-REGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITA--------- 486 (2102)
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHH-cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH---------
Confidence 46899999999999998866331 1111 1123455556689999999999999987540 00 0001111
Q ss_pred hHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccch-hHH--HHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcc
Q 000134 238 ELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQ-HFL--FLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLK 314 (2096)
Q Consensus 238 ~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e-~~~--~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~ 314 (2096)
-..+-.+-+.+. ..|+.++|-..-+++-|.. ...+.. ++. -++-.|++.|.+.++-++..|..-|.+++..-..
T Consensus 487 -aGaIP~LV~LL~-s~~~~iqeeAawAL~NLa~-~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~ 563 (2102)
T PLN03200 487 -AGGIPPLVQLLE-TGSQKAKEDSATVLWNLCC-HSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA 563 (2102)
T ss_pred -CCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhC-CcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch
Confidence 122344455444 4567799998888888843 111111 111 2355689999999999999999999888554221
Q ss_pred cccccccchhhhhhhhhhHHHHHHhc-CchHHHHHHHH---HHhCCC-hHHHHHhh--cccccchhhhccccChh-----
Q 000134 315 GGCELLVSKAVLICNELFDYLSVRLA-SRPIMVREFAE---AAFGVE-TEELVKKM--IPAVLPKLVVSQQDNDQ----- 382 (2096)
Q Consensus 315 ~~~~l~~~~~~~~~~~l~~~~~~~l~-~rp~~~~~~~e---~llg~~-~~~fL~~~--~~~~LP~LVl~~~~~~~----- 382 (2096)
. .+ ..++.-|. ..|.+.....+ .++.+. -+++.... ..-.+|.|+---+....
T Consensus 564 ~----------~I-----~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~ 628 (2102)
T PLN03200 564 A----------TI-----SQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEK 628 (2102)
T ss_pred h----------HH-----HHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHH
Confidence 1 11 11221121 22222222111 122222 22323221 23477777764322211
Q ss_pred HHHHHHHHHHHcCCCchhHHh-hhHHHHHHHHhcccc--HHHHHHHHHHHhhhcCCC-hHHHHH-HhhHHHHHHHHHhhc
Q 000134 383 AVNIINELAKCLNTDMVPLIV-TWIPKVLAFALHQAD--ERRLLSALEFYCIQTGSD-NQEIFA-AALPALLDELICFVD 457 (2096)
Q Consensus 383 ~~~~i~~ia~~~~~~~~~l~~-~~~~~Ila~ll~~~~--~~~~~~~l~~~~~~~~~~-~~~~~~-~~~~~~l~eLl~~~~ 457 (2096)
+..+|..|+...+.-...++. +-+|.++.+|-.... ..+.+.+|..+......+ ...++. .++|.++ +|+ .
T Consensus 629 Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~-~LL---~ 704 (2102)
T PLN03200 629 AASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLI-KLA---K 704 (2102)
T ss_pred HHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHH-HHH---h
Confidence 334555555533333344443 355555555544333 345667776666422211 123344 3556655 554 3
Q ss_pred CCCchhHhhhhcchhHHHHHHhhhccCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHh-------
Q 000134 458 GGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMI------- 530 (2096)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~------- 530 (2096)
..|.+. +..++..++.+...++.-..+.+...+..+..+= ......-|+.|-.+|..|.+-.
T Consensus 705 ~~d~~v-------~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lL----r~G~~~~k~~Aa~AL~~L~~~~~~~~~~~ 773 (2102)
T PLN03200 705 SSSIEV-------AEQAVCALANLLSDPEVAAEALAEDIILPLTRVL----REGTLEGKRNAARALAQLLKHFPVDDVLK 773 (2102)
T ss_pred CCChHH-------HHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHH----HhCChHHHHHHHHHHHHHHhCCChhHHHH
Confidence 333322 2345555666777777677777665555444432 3344556777777666654311
Q ss_pred cc-ccccchhhHHHHHHHHhcCCCcchh----hhH-----------------HHHHHHHHhccCCCcchhhHHHHHHHHh
Q 000134 531 GS-HLTTYVPKILVLLMHAINKESLQCE----GLS-----------------VLHFFIEQLSRVSPSSTKHVISQVFAAL 588 (2096)
Q Consensus 531 g~-~v~~~~pqI~a~L~~aL~~~~L~~~----~l~-----------------~W~~fv~~L~~~~~~~l~~ll~~i~~~l 588 (2096)
+. +-..+..-++.+|.+. ++... ++. -|..|+.. |+.++|++.-+
T Consensus 774 ~~~~~~g~v~~l~~~L~~~----~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~-----p~~l~~l~~~l---- 840 (2102)
T PLN03200 774 DSVQCRGTVLALVDLLNST----DLDSSATSEALEALALLARTKGGANFSHPPWAVLAEV-----PSSLEPLVRCL---- 840 (2102)
T ss_pred HHHHHhCcHHHHHHHHhcC----CcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhc-----cCchHHHHHHH----
Confidence 11 1122333333333322 22221 222 34444432 45555544322
Q ss_pred hhccccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCChhhhHHHHHHHHHhcCCCCHHHHHHHHH-hhccCC
Q 000134 589 IPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAV-DGLNHE 667 (2096)
Q Consensus 589 ip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~-~~l~~e 667 (2096)
. +.....+++|.+||+.|-.+....|++.+..-+- .| ..++ |.+++.
T Consensus 841 ----~---~~~p~~~~kai~il~~~~~~~~~~~~~~~~~~~~--~~-----------------------~~~~~~~~~~~ 888 (2102)
T PLN03200 841 ----A---EGHPLVQDKAIEILSRLCRDQPVVLGDLIANASK--CI-----------------------SSLADRIINSS 888 (2102)
T ss_pred ----H---cCChHHHHHHHHHHHHHhccChhHHHHHHhcccc--hH-----------------------HHHHHHHhhcC
Confidence 1 2222457999999999988888888877644321 11 1222 334566
Q ss_pred ChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhhh
Q 000134 668 NLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAE 718 (2096)
Q Consensus 668 n~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~ 718 (2096)
|+.|+.-+-.-|----+.|+....+.+ .+ ......||.+|++-...
T Consensus 889 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~ 934 (2102)
T PLN03200 889 SLEVKIGGTALLICAAKEHRQLVMEAL-DE----SGYLKLLIQALVDMLKQ 934 (2102)
T ss_pred CceEEecchhhhhhhhhhhHHHHHHHH-Hh----hccHHHHHHHHHHHHhc
Confidence 777777666555555555554332222 11 13566788888776543
No 66
>PTZ00429 beta-adaptin; Provisional
Probab=95.76 E-value=14 Score=51.08 Aligned_cols=144 Identities=17% Similarity=0.096 Sum_probs=88.8
Q ss_pred ChhhHHHHHHHhhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhh
Q 000134 144 DFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVL 223 (2096)
Q Consensus 144 ~~~~~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~ 223 (2096)
|++.+.+-+.+++-.. .-+++--|+--|-+..+-.++..++ -+-.+..=+.|++..+|-.|=|++.++-.
T Consensus 65 DvS~LF~dVvk~~~S~-d~elKKLvYLYL~~ya~~~pelalL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~---- 134 (746)
T PTZ00429 65 DVSYLFVDVVKLAPST-DLELKKLVYLYVLSTARLQPEKALL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRV---- 134 (746)
T ss_pred CchHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcccChHHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCc----
Confidence 3444444444433222 3444444555555554432222211 12344444589999999999998888541
Q ss_pred hhhccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHH--HHHHHHHhhCCCCcchHHHH
Q 000134 224 SSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLF--LLILLVEQLDNPHVTVRMNA 301 (2096)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~--~l~~Li~~L~~~n~~v~~~A 301 (2096)
...-+.++.-+++.+.+ ++|-|.=|...+++.|.. ...|++.- -+-.|.+.|..+|+.|.+.|
T Consensus 135 -----------~~i~e~l~~~lkk~L~D-~~pYVRKtAalai~Kly~---~~pelv~~~~~~~~L~~LL~D~dp~Vv~nA 199 (746)
T PTZ00429 135 -----------SSVLEYTLEPLRRAVAD-PDPYVRKTAAMGLGKLFH---DDMQLFYQQDFKKDLVELLNDNNPVVASNA 199 (746)
T ss_pred -----------HHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHh---hCcccccccchHHHHHHHhcCCCccHHHHH
Confidence 22235566677887765 668899999999999854 23333210 12346777899999999999
Q ss_pred HHHHHHHhhhh
Q 000134 302 SRLIRKSCFFH 312 (2096)
Q Consensus 302 ~~~i~~l~~~~ 312 (2096)
..-+..++...
T Consensus 200 l~aL~eI~~~~ 210 (746)
T PTZ00429 200 AAIVCEVNDYG 210 (746)
T ss_pred HHHHHHHHHhC
Confidence 99999986543
No 67
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=95.48 E-value=7.6 Score=51.02 Aligned_cols=394 Identities=15% Similarity=0.149 Sum_probs=193.8
Q ss_pred hhhHHHHHHHhhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhh
Q 000134 145 FSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLS 224 (2096)
Q Consensus 145 ~~~~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~ 224 (2096)
--++++.|...|-...-..++=+++....-.-.|+-.+ +.++..+-.+-++-+ .-|.+.||.|+..-++..+
T Consensus 53 v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~-d~~~~~~~~~~~~~~-~tps~~~q~~~~~~l~~~~------ 124 (569)
T KOG1242|consen 53 VLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIV-DPRPISIIEILLEEL-DTPSKSVQRAVSTCLPPLV------ 124 (569)
T ss_pred HHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhcccc-CcchhHHHHHHHHhc-CCCcHHHHHHHHHHhhhHH------
Confidence 34577777777766666666666665555555666533 222222232444545 8899999999999888864
Q ss_pred hhccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCcchHHHHHHH
Q 000134 225 SLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRL 304 (2096)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~ 304 (2096)
-..+ ......++..+-+.++.++-..-..---.-.|- .++-.+..+-=.-.+.-|-+.....++..+.-+--.
T Consensus 125 ~~~~------~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~-v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~ 197 (569)
T KOG1242|consen 125 VLSK------GLSGEYVLELLLELLTSTKIAERAGAAYGLAGL-VNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALL 197 (569)
T ss_pred HHhh------ccCHHHHHHHHHHHhccccHHHHhhhhHHHHHH-HcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHH
Confidence 1111 112233444444444422211111111111111 111111111111233445555666666555532222
Q ss_pred HHHHhhhhcccccccccchhhhhhhhhhHHHHHHhcCchHHHHHHHH----H----HhCCChHHHHHhhcccccchhhhc
Q 000134 305 IRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAE----A----AFGVETEELVKKMIPAVLPKLVVS 376 (2096)
Q Consensus 305 i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~rp~~~~~~~e----~----llg~~~~~fL~~~~~~~LP~LVl~ 376 (2096)
....+..+ .| ..+.+|..++ ++-+..++-.+-.-+|+-|. + +-...|..|| |+.|+-+.-.
T Consensus 198 a~~~~~~~-Lg--~~~EPyiv~~----lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~ll----psll~~l~~~ 266 (569)
T KOG1242|consen 198 AFEAAQGN-LG--PPFEPYIVPI----LPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLL----PSLLGSLLEA 266 (569)
T ss_pred HHHHHHHh-cC--CCCCchHHhh----HHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhh----hhhHHHHHHH
Confidence 22222222 22 2355666544 34444444333333333222 1 2222233222 2233333322
Q ss_pred c-ccChhHHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhccccHH---HHHHHHHHHhhhcCCChHHHHHHhhHHHHHHH
Q 000134 377 Q-QDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADER---RLLSALEFYCIQTGSDNQEIFAAALPALLDEL 452 (2096)
Q Consensus 377 ~-~~~~~~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~eL 452 (2096)
+ +....+++.+..+|.+..+-+..++-+=.|.+ +-.+.-..++ ..-.||.-+... ++..+ +....|.+++-
T Consensus 267 kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~l-sevl~DT~~evr~a~~~~l~~~~sv--idN~d-I~~~ip~Lld~- 341 (569)
T KOG1242|consen 267 KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVL-SEVLWDTKPEVRKAGIETLLKFGSV--IDNPD-IQKIIPTLLDA- 341 (569)
T ss_pred hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHH-HHHHccCCHHHHHHHHHHHHHHHHh--hccHH-HHHHHHHHHHH-
Confidence 1 11112345555555554443333332222222 2223221222 222333222211 12222 33345555542
Q ss_pred HHhhcCCCchhHhhhhcchhHHHHHHhhhccCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHh-c
Q 000134 453 ICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMI-G 531 (2096)
Q Consensus 453 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~-g 531 (2096)
+++ +. .+....++.+. ...+-.|..+-=|.||.-+=..=++..+...||++..-++.|-++. -
T Consensus 342 ---l~d--p~------~~~~e~~~~L~-----~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveD 405 (569)
T KOG1242|consen 342 ---LAD--PS------CYTPECLDSLG-----ATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVED 405 (569)
T ss_pred ---hcC--cc------cchHHHHHhhc-----ceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcC
Confidence 233 21 12334444433 2334445555566676655433334456778899999999999999 4
Q ss_pred c-ccccchhhHHHHHHHHhc--CCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHH
Q 000134 532 S-HLTTYVPKILVLLMHAIN--KESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVF 585 (2096)
Q Consensus 532 ~-~v~~~~pqI~a~L~~aL~--~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~ 585 (2096)
+ -+.+|+|+++=.|+..+. .|+.|..+.++...+++.+.++.-.++.|.+....
T Consensus 406 p~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~ 462 (569)
T KOG1242|consen 406 PKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSFDDLIPELSETL 462 (569)
T ss_pred HHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhh
Confidence 4 799999999999998875 58999999999999999987654445555555444
No 68
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=95.47 E-value=6.8 Score=52.05 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=47.6
Q ss_pred hhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHH
Q 000134 250 TAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKS 308 (2096)
Q Consensus 250 ~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l 308 (2096)
.+.+|+.++=..-+.+..+ ...+.|+..++.=.|..-|.++|+.+|+.|.+-+.++
T Consensus 51 ~~s~~~~~Krl~yl~l~~~---~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i 106 (526)
T PF01602_consen 51 ISSKDLELKRLGYLYLSLY---LHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNI 106 (526)
T ss_dssp CSSSSHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHH---hhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhh
Confidence 3489999999999999987 3457777767777799999999999999999999888
No 69
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.30 E-value=4.9 Score=53.56 Aligned_cols=356 Identities=13% Similarity=0.111 Sum_probs=192.5
Q ss_pred hhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHH----HHHHHHHhhhcCChhHHHHHHHHHHHHHhhh--
Q 000134 199 LLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKL----LDVIKLAFTAADDPLILETLLESTAELMMAV-- 272 (2096)
Q Consensus 199 ~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~-- 272 (2096)
+.+||..=|+|+..+..+.+ ++.+.-+...+ +--|-..+. -+.-.+++|.=-|+|+|....
T Consensus 373 i~~pdwr~reaavmAFGSIl------------~gp~~~~Lt~iV~qalp~ii~lm~-D~sl~VkdTaAwtlgrI~d~l~e 439 (859)
T KOG1241|consen 373 IQNPDWRNREAAVMAFGSIL------------EGPEPDKLTPIVIQALPSIINLMS-DPSLWVKDTAAWTLGRIADFLPE 439 (859)
T ss_pred cCCcchhhhhHHHHHHHhhh------------cCCchhhhhHHHhhhhHHHHHHhc-CchhhhcchHHHHHHHHHhhchh
Confidence 48999999999999999987 22222222221 112222222 233457889999999996433
Q ss_pred c-ccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccchhhhhhhhhhHHHHHHhcCchHH------
Q 000134 273 D-VHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIM------ 345 (2096)
Q Consensus 273 ~-~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~rp~~------ 345 (2096)
. ++.+..-..+..|++-| +.+|-|+.++..-+.++|++.-..+- +++-+.+....|++++..|+.-.+.
T Consensus 440 ~~~n~~~l~~~l~~l~~gL-~DePrva~N~CWAf~~Laea~~eA~~---s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqs 515 (859)
T KOG1241|consen 440 AIINQELLQSKLSALLEGL-NDEPRVASNVCWAFISLAEAAYEAAV---SNGQTDPATPFYEAIIGSLLKVTDRADGNQS 515 (859)
T ss_pred hcccHhhhhHHHHHHHHHh-hhCchHHHHHHHHHHHHHHHHHHhcc---CCCCCCccchhHHHHHHHHHhhccccccchh
Confidence 2 33444444455566666 45699999999999999988755422 2223333345688888887622211
Q ss_pred ------HHHHHHHHhCCChHHHHHhhcccccchhhhccccChhHHHHHH----HHHHHcCC-CchhHHhhhHHHHHHHHh
Q 000134 346 ------VREFAEAAFGVETEELVKKMIPAVLPKLVVSQQDNDQAVNIIN----ELAKCLNT-DMVPLIVTWIPKVLAFAL 414 (2096)
Q Consensus 346 ------~~~~~e~llg~~~~~fL~~~~~~~LP~LVl~~~~~~~~~~~i~----~ia~~~~~-~~~~l~~~~~~~Ila~ll 414 (2096)
=..+.| +...++++-....+..++=-+. |-+ ++|. ..+..-+- +++.++.+.+..|+.-+=
T Consensus 516 NLR~AAYeALmE-lIk~st~~vy~~v~~~~l~il~---kl~----q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~ 587 (859)
T KOG1241|consen 516 NLRSAAYEALME-LIKNSTDDVYPMVQKLTLVILE---KLD----QTISSQILSLADRAQLNELQSLLCNTLQSIIRKVG 587 (859)
T ss_pred hHHHHHHHHHHH-HHHcCcHHHHHHHHHHHHHHHH---HHH----HHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHcc
Confidence 223333 5555555544433222221111 111 1222 11211111 256666677777766554
Q ss_pred c--cccHHHHHHHH-HHHhhhcCC--ChHHH--------------HHHhhHHHHHHHHHhhcCCCchhHhhhhcchhHHH
Q 000134 415 H--QADERRLLSAL-EFYCIQTGS--DNQEI--------------FAAALPALLDELICFVDGGDSDEINERLNRVPRVI 475 (2096)
Q Consensus 415 ~--~~~~~~~~~~l-~~~~~~~~~--~~~~~--------------~~~~~~~~l~eLl~~~~~~~~~~~~~~~~~~~~~~ 475 (2096)
. .+..+.++..+ ..+.+ +++ -..+. |....|.+.-=|++ |..+.+|.--.. -++
T Consensus 588 ~~~~~~~d~iM~lflri~~s-~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~--gL~n~~e~qVc~----~aV 660 (859)
T KOG1241|consen 588 SDIREVSDQIMGLFLRIFES-KRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLM--GLSNFQEYQVCA----AAV 660 (859)
T ss_pred ccchhHHHHHHHHHHHHHcC-CccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH--HhhcchHHHHHH----HHH
Confidence 3 11123333322 22222 111 12222 23333333332222 222222211000 011
Q ss_pred HHHhhhccCCCChhhhhHHHHHHHHHHhhhhhcCCC-ChHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHh--cC-
Q 000134 476 RKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAE-DLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAI--NK- 551 (2096)
Q Consensus 476 ~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~-~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL--~~- 551 (2096)
--++.+ ...+.+=+.++-=++|+.+-..+.++. .-..|=..|-.+|.+---+|.+--+++--||.+||.|= +-
T Consensus 661 glVgdl---~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d 737 (859)
T KOG1241|consen 661 GLVGDL---ARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTD 737 (859)
T ss_pred HHHHHH---HHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCC
Confidence 111100 123445566677778888776665542 12245567888999888889999999999999999775 21
Q ss_pred ----------CCcchhhhHHHHHHHHHhcc-CCCcchhhHHHHHHHHhh
Q 000134 552 ----------ESLQCEGLSVLHFFIEQLSR-VSPSSTKHVISQVFAALI 589 (2096)
Q Consensus 552 ----------~~L~~~~l~~W~~fv~~L~~-~~~~~l~~ll~~i~~~li 589 (2096)
++||+.++.+..-.++-|.. .++..+.|++..||..+=
T Consensus 738 ~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~ 786 (859)
T KOG1241|consen 738 PADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFID 786 (859)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHH
Confidence 36899999999998888862 123456688887776653
No 70
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=95.27 E-value=5.7 Score=52.68 Aligned_cols=157 Identities=18% Similarity=0.209 Sum_probs=92.5
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC--hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccc
Q 000134 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASGAP--NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSIT 1425 (2096)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~all~a~~~~~~--~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~ 1425 (2096)
..+..+-=||+-.++|.++.|..++-.|..+... ...-.-||.+-.-|+..+|.+++.-......
T Consensus 227 ~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~------------- 293 (517)
T PF12569_consen 227 LVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV------------- 293 (517)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC-------------
Confidence 4566777788888888888888888888877543 4555778888888888888887765422100
Q ss_pred ccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHH
Q 000134 1426 SLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDAR 1505 (2096)
Q Consensus 1426 ~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~~~ 1505 (2096)
++...+.+-|-.---...|++++..|+| ....+.|..+.+....|..-.|-+-.|+=+-
T Consensus 294 -------~~~~~L~~mQc~Wf~~e~a~a~~r~~~~---------~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK----- 352 (517)
T PF12569_consen 294 -------DPLSNLNDMQCMWFETECAEAYLRQGDY---------GLALKRFHAVLKHFDDFEEDQFDFHSYCLRK----- 352 (517)
T ss_pred -------CcccCHHHHHHHHHHHHHHHHHHHHhhH---------HHHHHHHHHHHHHHHHHhcccccHHHHHHhh-----
Confidence 0000001111111112346666666555 3356667777766666665555444443211
Q ss_pred hhhhhcccCCcchhhhhchHHHHHHHHHHhhcc-----CCcchhhhHHHHHHhhhhcCc
Q 000134 1506 KRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHR-----GHKNLFQALPRLLTLWFDFGS 1559 (2096)
Q Consensus 1506 ~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~-----g~~~~~q~lpRlLtLWl~~g~ 1559 (2096)
..+..|+.-|++ ++.+.+.+....+.+|+..-.
T Consensus 353 ---------------------~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d 390 (517)
T PF12569_consen 353 ---------------------MTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHD 390 (517)
T ss_pred ---------------------ccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhc
Confidence 245556665543 345566777778888877554
No 71
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.27 E-value=24 Score=50.70 Aligned_cols=179 Identities=16% Similarity=0.257 Sum_probs=101.5
Q ss_pred hhcccccchhhhccccChh--HHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhccccHH----HHHHHHHHHhhhcCCCh
Q 000134 364 KMIPAVLPKLVVSQQDNDQ--AVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADER----RLLSALEFYCIQTGSDN 437 (2096)
Q Consensus 364 ~~~~~~LP~LVl~~~~~~~--~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~~~~~----~~~~~l~~~~~~~~~~~ 437 (2096)
...+..+|.|...+ .|+. +......|=+.+=++-+..+..++-.|+--|+.+.+.. ..++||....--.+.+
T Consensus 994 p~l~kLIPrLyRY~-yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~- 1071 (1702)
T KOG0915|consen 994 PYLKKLIPRLYRYQ-YDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRP- 1071 (1702)
T ss_pred hHHHHhhHHHhhhc-cCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCC-
Confidence 34444689999874 3332 23455566667777778888899999999999877743 4678887644333333
Q ss_pred HHHHHHhhHHHHHHHHHhhcCCCchhHhhhh-cchhHHHHHHhhhccCC-CChhhhhHHHHHHHH-HH-hhhhhcCCCCh
Q 000134 438 QEIFAAALPALLDELICFVDGGDSDEINERL-NRVPRVIRKVSTVLTGN-EDLPGFLRNHFVGLL-NS-IDRKMLHAEDL 513 (2096)
Q Consensus 438 ~~~~~~~~~~~l~eLl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~fl~~~~LGil-~~-~~~~l~~~~~~ 513 (2096)
.+-+.+-+|.+...+..-+++ =-|+.|.. .+..+++.++--.+.++ +... -+.++.++ -+ ++.-++ ++-.
T Consensus 1072 ~~~~~e~lpelw~~~fRvmDD--IKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~---~~~~l~~iLPfLl~~gim-s~v~ 1145 (1702)
T KOG0915|consen 1072 FDQVKEKLPELWEAAFRVMDD--IKESVREAADKAARALSKLCVRICDVTNGAK---GKEALDIILPFLLDEGIM-SKVN 1145 (1702)
T ss_pred hHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhcccCCccc---HHHHHHHHHHHHhccCcc-cchH
Confidence 334455666665444433322 12221111 12222222211111111 1110 12233332 11 333333 2223
Q ss_pred HHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHhc
Q 000134 514 SLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAIN 550 (2096)
Q Consensus 514 ~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL~ 550 (2096)
+.++-+|.-+..|++-.|+.+.++.|+.+.+|..+..
T Consensus 1146 evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s 1182 (1702)
T KOG0915|consen 1146 EVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYS 1182 (1702)
T ss_pred HHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHcc
Confidence 4567788889999999999999999999999998874
No 72
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.22 E-value=9.4 Score=52.85 Aligned_cols=333 Identities=12% Similarity=0.055 Sum_probs=179.2
Q ss_pred CCHHHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCcc--------------------------ccCCC-CChhhHHHHH
Q 000134 1041 IPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPAA--------------------------EKSGT-FEDEDVSFLM 1093 (2096)
Q Consensus 1041 Ip~~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~--------------------------~~~~~-~~~~~~~~L~ 1093 (2096)
+.+..+..+-.++|.+..|+..++.-.+... .|+. .+.|. .....+..|+
T Consensus 190 ~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~---~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li 266 (697)
T PLN03081 190 ASWGTIIGGLVDAGNYREAFALFREMWEDGS---DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALI 266 (697)
T ss_pred eeHHHHHHHHHHCcCHHHHHHHHHHHHHhCC---CCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHH
Confidence 3456667777777888888887776543211 1100 00000 0112457889
Q ss_pred HHHhcCCChHHHHHHHHHhcc---CChhHHHHHhHhhcCHHHHHHHHHHHHcc--CCCchhhhhhHHHHHHhccChHHHH
Q 000134 1094 EIYSFLDEPDGLSGLARLHKS---LSLQDELLSNKKSGNWAEVFTSCEQALQM--EPTSVQRHSDVLNCLLNMCHLQAMV 1168 (2096)
Q Consensus 1094 ~IYa~LdEpDgl~Gi~~~~~~---~sl~~qil~~E~~G~W~~A~~~YE~~Lq~--~p~~~~~~~glL~CL~~LGq~~~ll 1168 (2096)
+.|..-++.|.+..+...... .+-+.-|-.|-+.|++++|+..|+...+. .|+.. ....+++++.++|.++...
T Consensus 267 ~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~ 345 (697)
T PLN03081 267 DMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF-TFSIMIRIFSRLALLEHAK 345 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhccchHHHH
Confidence 999999999988888764222 23345566789999999999999876543 35443 4557888888889888655
Q ss_pred HHhhhhhccChhhhhhHhHHHHHHHHhcCChhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHH
Q 000134 1169 THVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKI 1248 (2096)
Q Consensus 1169 ~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i 1248 (2096)
...+.+...........+..-+.+-.+.|+++.-.+....+... ...+|+. +..++ .++++..+..+..
T Consensus 346 ~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~--------d~~t~n~-lI~~y--~~~G~~~~A~~lf 414 (697)
T PLN03081 346 QAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK--------NLISWNA-LIAGY--GNHGRGTKAVEMF 414 (697)
T ss_pred HHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC--------CeeeHHH-HHHHH--HHcCCHHHHHHHH
Confidence 54433322211111122333456667788888887777665431 1234543 22233 2455555555555
Q ss_pred HHHHHHhhhhhhccchhhHHhhhHHHHHhhhhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhh
Q 000134 1249 GVSKQVLIAPLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAR 1328 (2096)
Q Consensus 1249 ~~aR~~l~~~Lsa~~~eSy~r~y~~l~kLH~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~ 1328 (2096)
+++... .+.+. ..+|...-....+.-.+.|-.++.+.+... .+..++......+.+.+-+. ..+..-
T Consensus 415 ~~M~~~---g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~----~g~~p~~~~y~~li~~l~r~-----G~~~eA 481 (697)
T PLN03081 415 ERMIAE---GVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSEN----HRIKPRAMHYACMIELLGRE-----GLLDEA 481 (697)
T ss_pred HHHHHh---CCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHh----cCCCCCccchHhHHHHHHhc-----CCHHHH
Confidence 444322 11111 112332222222222222222222211100 00001111111121111110 001000
Q ss_pred hhHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC--hHHHHHHHHHHHcCCchHHHHHHHH
Q 000134 1329 EPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAP--NVHMEKAKLLWSTRRSDGAIAELQQ 1406 (2096)
Q Consensus 1329 e~iLslRr~vl~~~~~~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~~--~~~iE~AKLLW~~g~~~~Ai~~L~~ 1406 (2096)
..+ +++. .... ...+|-.....+|++|.++.|..+..++..+++. ..+.--+.++-+.|+.++|.+.++.
T Consensus 482 ~~~--~~~~-----~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~ 553 (697)
T PLN03081 482 YAM--IRRA-----PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVET 553 (697)
T ss_pred HHH--HHHC-----CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHH
Confidence 011 1111 1111 2457999999999999999999999888776543 4566667889999999999999987
Q ss_pred Hhh
Q 000134 1407 NLL 1409 (2096)
Q Consensus 1407 ~i~ 1409 (2096)
.-+
T Consensus 554 m~~ 556 (697)
T PLN03081 554 LKR 556 (697)
T ss_pred HHH
Confidence 654
No 73
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=95.18 E-value=8.3 Score=49.83 Aligned_cols=290 Identities=9% Similarity=-0.030 Sum_probs=147.1
Q ss_pred hhHHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhc
Q 000134 1117 LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRL 1196 (2096)
Q Consensus 1117 l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrl 1196 (2096)
...+.+..-.+|+|+.|.....++....|++.-..+-.-+.....|+++....+.+......|+.........++.....
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~ 166 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ 166 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC
Confidence 34455666788888888888888777777766555545556667788877766666544444443222222245666677
Q ss_pred CChhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHHHH
Q 000134 1197 GRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVK 1276 (2096)
Q Consensus 1197 g~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~k 1276 (2096)
|+|+.-.+.+....... +.+..-..-+ +...+..+|.....+.+...++.. ....+.+.... ....
T Consensus 167 ~~~~~Al~~l~~l~~~~------P~~~~~l~ll--~~~~~~~~d~~~a~~~l~~l~k~~-----~~~~~~~~~l~-~~a~ 232 (409)
T TIGR00540 167 NELHAARHGVDKLLEMA------PRHKEVLKLA--EEAYIRSGAWQALDDIIDNMAKAG-----LFDDEEFADLE-QKAE 232 (409)
T ss_pred CCHHHHHHHHHHHHHhC------CCCHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHcC-----CCCHHHHHHHH-HHHH
Confidence 78764433333222110 0111111112 222344556555544444333321 00011110000 0000
Q ss_pred hhhhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHH
Q 000134 1277 LHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYA 1356 (2096)
Q Consensus 1277 LH~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~A 1356 (2096)
.+.+. +... ......+...|+. ++-- .......++..|
T Consensus 233 ~~~l~------~~~~------------~~~~~~L~~~~~~-~p~~-----------------------~~~~~~l~~~~a 270 (409)
T TIGR00540 233 IGLLD------EAMA------------DEGIDGLLNWWKN-QPRH-----------------------RRHNIALKIALA 270 (409)
T ss_pred HHHHH------HHHH------------hcCHHHHHHHHHH-CCHH-----------------------HhCCHHHHHHHH
Confidence 11110 0000 0011223333322 1000 001256788999
Q ss_pred HHHHHcCChHHHHHHHHHHhhcCCChH-----HHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCC
Q 000134 1357 KLCRLAGHYETATRAILEAQASGAPNV-----HMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVP 1431 (2096)
Q Consensus 1357 klARKag~~~~A~~all~a~~~~~~~~-----~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~ 1431 (2096)
++..+.|.++.|...+.++.+..+++. .+..+-.+ ..++...+++.+++.++..|.
T Consensus 271 ~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l-~~~~~~~~~~~~e~~lk~~p~------------------ 331 (409)
T TIGR00540 271 EHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRL-KPEDNEKLEKLIEKQAKNVDD------------------ 331 (409)
T ss_pred HHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhc-CCCChHHHHHHHHHHHHhCCC------------------
Confidence 999999999999999999987544332 33222222 246677888888887653221
Q ss_pred CCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHH--HHHHhccchHHHHHHHHhhhHHH
Q 000134 1432 LNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYS--RVRELQPMWEKGYFYMAKYCDDV 1500 (2096)
Q Consensus 1432 ~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~--~a~~l~~~weK~~~~la~y~d~l 1500 (2096)
++. +.....+|+-....+ ..++..++|+ .+.+.+|+-+- +.++|.-+.+.
T Consensus 332 ---------------~~~-~~ll~sLg~l~~~~~--~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~ 383 (409)
T TIGR00540 332 ---------------KPK-CCINRALGQLLMKHG--EFIEAADAFKNVAACKEQLDAND-LAMAADAFDQA 383 (409)
T ss_pred ---------------Chh-HHHHHHHHHHHHHcc--cHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHc
Confidence 111 123334443332222 3567778888 57778887766 44777776543
No 74
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=95.05 E-value=9.8 Score=49.02 Aligned_cols=110 Identities=13% Similarity=0.091 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC-CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccccc
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASG-APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSL 1427 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~-~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~ 1427 (2096)
...++.+|+...+.|..+.|...+.++...+ ++...+-++++ ..|+..+|++.+++.++..|.
T Consensus 263 ~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~-------------- 326 (398)
T PRK10747 263 VALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGD-------------- 326 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCC--------------
Confidence 5678899999999999999999999987743 34455556655 348889999999988764221
Q ss_pred CCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHH
Q 000134 1428 SLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDD 1499 (2096)
Q Consensus 1428 ~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~ 1499 (2096)
-+..++.+|+-....++ .+...++|.++.+..|+- ..|..+|.-+++
T Consensus 327 ----------------------~~~l~l~lgrl~~~~~~--~~~A~~~le~al~~~P~~-~~~~~La~~~~~ 373 (398)
T PRK10747 327 ----------------------TPLLWSTLGQLLMKHGE--WQEASLAFRAALKQRPDA-YDYAWLADALDR 373 (398)
T ss_pred ----------------------CHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHH
Confidence 03345666665554443 678889999999999975 456677776653
No 75
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=94.88 E-value=0.059 Score=50.56 Aligned_cols=55 Identities=22% Similarity=0.373 Sum_probs=49.5
Q ss_pred hhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChh
Q 000134 1126 KSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ 1180 (2096)
Q Consensus 1126 ~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~ 1180 (2096)
+.|+|++|...|+.+++..|++.+...++-+|+...|+++......+.+....|+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 5799999999999999999999999999999999999999998888887776665
No 76
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.67 E-value=8 Score=49.41 Aligned_cols=66 Identities=14% Similarity=0.182 Sum_probs=51.9
Q ss_pred HHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhH
Q 000134 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTW 1185 (2096)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~ 1185 (2096)
.---+-.+|.+++|..||..++...|+......+.--|+-.+|.|..+..-.-.-+.-.|++.+.+
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl 186 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKAL 186 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHH
Confidence 334466889999999999999999999777788899999999999988765554445556655543
No 77
>PLN03218 maturation of RBCL 1; Provisional
Probab=94.46 E-value=39 Score=48.99 Aligned_cols=326 Identities=10% Similarity=-0.015 Sum_probs=183.4
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhc----cCC--
Q 000134 1043 KVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHK----SLS-- 1116 (2096)
Q Consensus 1043 ~~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~----~~s-- 1116 (2096)
+..+..+..+++.+..|+..++.-.+.. ..| ....+..|+..|+..++.|.+..+..... .++
T Consensus 440 yn~LL~a~~k~g~~e~A~~lf~~M~~~G---l~p--------D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdvv 508 (1060)
T PLN03218 440 FNMLMSVCASSQDIDGALRVLRLVQEAG---LKA--------DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVH 508 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcC---CCC--------CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHH
Confidence 3456677788999999999888754321 111 23568999999999999999998875322 122
Q ss_pred -hhHHHHHhHhhcCHHHHHHHHHHHHcc--CCCchhhhhhHHHHHHhccChHHHHHHhhhhhcc----ChhhhhhHhHHH
Q 000134 1117 -LQDELLSNKKSGNWAEVFTSCEQALQM--EPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISR----IPQYKKTWCMQG 1189 (2096)
Q Consensus 1117 -l~~qil~~E~~G~W~~A~~~YE~~Lq~--~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~----~p~~~~~~~~~~ 1189 (2096)
...-|-.|-+.|++++|...|+...+. .|+ ......+++++.+.|+++......+.+... .|+. ..+..-
T Consensus 509 TynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~--vTynaL 585 (1060)
T PLN03218 509 TFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH--ITVGAL 585 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH--HHHHHH
Confidence 223456789999999999999987654 354 344567899999999999877766665431 2321 122334
Q ss_pred HHHHHhcCChhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHh
Q 000134 1190 VQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTR 1269 (2096)
Q Consensus 1190 vEAAWrlg~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r 1269 (2096)
+.+.-+.|+++...+....+...|. .+....|+ .+..++ .+.++.++..+....++.. .+.+. ..+|..
T Consensus 586 I~ay~k~G~ldeA~elf~~M~e~gi----~p~~~tyn-sLI~ay--~k~G~~deAl~lf~eM~~~---Gv~PD-~~Tyns 654 (1060)
T PLN03218 586 MKACANAGQVDRAKEVYQMIHEYNI----KGTPEVYT-IAVNSC--SQKGDWDFALSIYDDMKKK---GVKPD-EVFFSA 654 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCC----CCChHHHH-HHHHHH--HhcCCHHHHHHHHHHHHHc---CCCCC-HHHHHH
Confidence 5666688999888777766654321 11112332 222222 2345544444444443322 11111 223433
Q ss_pred hhHHHHHhhhhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChh-hhhhHHHHHHhhcCcCCCCchh
Q 000134 1270 AYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLW-AREPLLAFRRMVFGASGLGAEV 1348 (2096)
Q Consensus 1270 ~y~~l~kLH~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~-~~e~iLslRr~vl~~~~~~~~~ 1348 (2096)
..+...+.-.+.|..++...+.. .....+......+....-+- ..+. ..+-+-.++. .+...+
T Consensus 655 LI~a~~k~G~~eeA~~l~~eM~k-----~G~~pd~~tynsLI~ay~k~-----G~~eeA~~lf~eM~~-----~g~~Pd- 718 (1060)
T PLN03218 655 LVDVAGHAGDLDKAFEILQDARK-----QGIKLGTVSYSSLMGACSNA-----KNWKKALELYEDIKS-----IKLRPT- 718 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHH-----cCCCCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHH-----cCCCCC-
Confidence 33333333333333333222211 11112222222333222110 0110 0000101111 112222
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC-Ch--HHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGA-PN--VHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~~-~~--~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
..+|-.......+.|+++.|...+.+....+. |+ .+---...+-+.|+.++|.+.++..++
T Consensus 719 vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 719 VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45799999999999999999999998776652 33 122233567778999999999998865
No 78
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.21 E-value=15 Score=47.72 Aligned_cols=293 Identities=17% Similarity=0.220 Sum_probs=159.0
Q ss_pred HHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHHHHHHHHHhhhcCC-hhHHHHHHHHHHHHHhhhccc
Q 000134 197 FLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADD-PLILETLLESTAELMMAVDVH 275 (2096)
Q Consensus 197 ~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~i~eTll~~~~~i~~~~~~~ 275 (2096)
..+.||-=+=|+|++-.+...+.+-+ ..++-....+++..+..-+.-.-+ ++=+ --|+-+|....|-..+
T Consensus 7 r~ltdKlYekRKaaalelEk~Vk~l~--------~~~~~~~i~k~I~~L~~d~a~s~~~n~rk-GgLiGlAA~~iaLg~~ 77 (675)
T KOG0212|consen 7 RGLTDKLYEKRKAAALELEKLVKDLV--------NNNDYDQIRKVISELAGDYAYSPHANMRK-GGLIGLAAVAIALGIK 77 (675)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH--------ccCcHHHHHHHHHHHHHHhccCccccccc-chHHHHHHHHHHhccc
Confidence 34588989999999999888764322 223344456777755443443322 2222 4455555543333222
Q ss_pred ch-hHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccchhhhhhhhhhHHHHHHhcCchHHHHHHHHHHh
Q 000134 276 SQ-HFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAF 354 (2096)
Q Consensus 276 ~e-~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~rp~~~~~~~e~ll 354 (2096)
+- ..-.++--.+.+++.++.-||--|...+-++|+-.+.. +..++ +.+|+-+.|-..--.++++.-|| |+
T Consensus 78 ~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~----v~~~F----n~iFdvL~klsaDsd~~V~~~ae-LL 148 (675)
T KOG0212|consen 78 DAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGE----VLVYF----NEIFDVLCKLSADSDQNVRGGAE-LL 148 (675)
T ss_pred cHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccC----cccch----HHHHHHHHHHhcCCccccccHHH-HH
Confidence 21 23334444788999999999999999999999988664 34566 66788888877777888888887 22
Q ss_pred CCChHHHHHhhcccccchhhhccccChhHHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhccc--cHHHHHHHHHHHhhh
Q 000134 355 GVETEELVKKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQA--DERRLLSALEFYCIQ 432 (2096)
Q Consensus 355 g~~~~~fL~~~~~~~LP~LVl~~~~~~~~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~~--~~~~~~~~l~~~~~~ 432 (2096)
+.+++-+ |..+.. ---|.+ ..|++.+. +.... ++..+-+=|..+.+-
T Consensus 149 ----dRLikdI--------Vte~~~----tFsL~~--------~ipLL~er-------iy~~n~~tR~flv~Wl~~Lds~ 197 (675)
T KOG0212|consen 149 ----DRLIKDI--------VTESAS----TFSLPE--------FIPLLRER-------IYVINPMTRQFLVSWLYVLDSV 197 (675)
T ss_pred ----HHHHHHh--------cccccc----ccCHHH--------HHHHHHHH-------HhcCCchHHHHHHHHHHHHhcC
Confidence 3333332 111100 000111 11222221 11111 122233333333322
Q ss_pred cCCChHHHHHHhhHHHHHHHHHhhcCCCchhHhhhhcchhHHHHHHhhhccCCCChhhhhHHHHHHHHHHhhhhhcCCCC
Q 000134 433 TGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAED 512 (2096)
Q Consensus 433 ~~~~~~~~~~~~~~~~l~eLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~ 512 (2096)
..-++++ .+|.+++-|..++|+...+.....-.-..+-++++. +++..+ +| =.+++.+-.. +.++.
T Consensus 198 ---P~~~m~~-yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~---s~P~s~-d~-----~~~i~vlv~~-l~ss~ 263 (675)
T KOG0212|consen 198 ---PDLEMIS-YLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIR---SSPSSM-DY-----DDMINVLVPH-LQSSE 263 (675)
T ss_pred ---CcHHHHh-cchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh---cCcccc-Cc-----ccchhhcccc-ccCCc
Confidence 2334444 778888888878877644321111111122233322 222222 11 0111111111 23455
Q ss_pred hHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHhcCC
Q 000134 513 LSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKE 552 (2096)
Q Consensus 513 ~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL~~~ 552 (2096)
...|..||.=|.+++++-|..+-.+.++|..-+.-.+...
T Consensus 264 ~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~ 303 (675)
T KOG0212|consen 264 PEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDT 303 (675)
T ss_pred HHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCC
Confidence 6788999999999999999988888888776665555433
No 79
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.02 E-value=10 Score=51.14 Aligned_cols=37 Identities=19% Similarity=0.112 Sum_probs=32.1
Q ss_pred hcccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHH
Q 000134 272 VDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKS 308 (2096)
Q Consensus 272 ~~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l 308 (2096)
-|.+-|++.+..=+|---|-|+|-+|=|.|.+-+.++
T Consensus 98 LdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i 134 (866)
T KOG1062|consen 98 LDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNI 134 (866)
T ss_pred hccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhcc
Confidence 4667888877777899999999999999999988877
No 80
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=93.97 E-value=31 Score=46.06 Aligned_cols=335 Identities=13% Similarity=0.177 Sum_probs=176.6
Q ss_pred cccCCChhhHHHHHHHhhcc-cCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHh
Q 000134 139 LNFHSDFSFLLNIYFEFLYD-ESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYF 217 (2096)
Q Consensus 139 ~~~~~~~~~~~~~~~~~l~~-~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~ 217 (2096)
|-....++.+-+ |.|.++. ..|-+-+=-+++....|.....+.++--- ...++||+.+|.|..+.||.-.+-++++.
T Consensus 503 vasalgip~llp-fLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl-~~lv~ii~~gl~De~qkVR~itAlalsal 580 (1172)
T KOG0213|consen 503 VASALGIPALLP-FLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHL-KPLVKIIEHGLKDEQQKVRTITALALSAL 580 (1172)
T ss_pred HHHHhCcHHHHH-HHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhh-HHHHHHHHHhhcccchhhhhHHHHHHHHH
Confidence 445667788888 8888888 44777777788888877777666654332 45789999999999999999998888885
Q ss_pred hhhhhhhhhccCcccccchhh-HHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCcc
Q 000134 218 LQDTVLSSLFLDENASSRSNE-LKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVT 296 (2096)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~ 296 (2096)
.++.. - -+..- ..+|.-+ |..| +.. ++.. +.+|..-+.||-+-.--
T Consensus 581 aeaa~---------P-ygie~fDsVlkpL-------------------wkgi--r~h-rgk~-laafLkAigyliplmd~ 627 (1172)
T KOG0213|consen 581 AEAAT---------P-YGIEQFDSVLKPL-------------------WKGI--RQH-RGKE-LAAFLKAIGYLIPLMDA 627 (1172)
T ss_pred HHhcC---------C-cchHHHHHHHHHH-------------------HHHH--HHc-cChH-HHHHHHHHhhccccccH
Confidence 42211 1 11111 1122222 2222 221 2222 23666677777665444
Q ss_pred hHHHHHH-HHHHHhhhhcccccccccchhhhhhhhhhHHHHHHhcCchHHHHHHHHHHhCCChHHHHHhhcccccchhhh
Q 000134 297 VRMNASR-LIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVKKMIPAVLPKLVV 375 (2096)
Q Consensus 297 v~~~A~~-~i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~rp~~~~~~~e~llg~~~~~fL~~~~~~~LP~LVl 375 (2096)
..+.-|+ ++.-+-.+- +-++...| =..+.| .+++.| +.-|++. ++++.- +||....
T Consensus 628 eya~yyTrevmlil~rE-------f~sPDeem----kkivLK-------Vv~qcc-~t~Gv~~-~y~r~d---ilp~ff~ 684 (1172)
T KOG0213|consen 628 EYASYYTREVMLILIRE-------FGSPDEEM----KKIVLK-------VVKQCC-ATDGVEP-AYIRFD---ILPEFFF 684 (1172)
T ss_pred HHHHHhHHHHHHHHHHh-------hCCChHHH----HHHHHH-------HHHHHh-cccCCCH-HHHhhh---hhHHHHh
Confidence 4444443 333331111 11233222 122221 344544 4555443 344433 4555443
Q ss_pred c---------cccChhHHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhccccHHHHHHHHHHHhhhcCCChHHHHHHhhH
Q 000134 376 S---------QQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERRLLSALEFYCIQTGSDNQEIFAAALP 446 (2096)
Q Consensus 376 ~---------~~~~~~~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 446 (2096)
. ++...+.+.+-.+||...+.+ +.+...+.-+..+ . +=++....
T Consensus 685 ~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~----------------------~~v~R~v~~lkde----~-e~yrkm~~ 737 (1172)
T KOG0213|consen 685 SFWGRRMALDRRNYKQLVDTTVEIAAKVGSD----------------------PIVSRVVLDLKDE----P-EQYRKMVA 737 (1172)
T ss_pred hhhhhhhhccccchhhHHHHHHHHHHHhCch----------------------HHHHHHhhhhccc----c-HHHHHHHH
Confidence 2 333333444555666655421 1122222111111 0 00111111
Q ss_pred HHHHHHHHhhcCCCchhHhhhhcchhHHHHHHhhhccCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHH
Q 000134 447 ALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEIL 526 (2096)
Q Consensus 447 ~~l~eLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~l 526 (2096)
.++...+-.+|..|-|+.. -+..+=||+.-|...-.. + .-.+..+|..
T Consensus 738 etv~ri~~~lg~~diderl--------------------------eE~lidgil~Afqeqtt~--d----~vml~gfg~V 785 (1172)
T KOG0213|consen 738 ETVSRIVGRLGAADIDERL--------------------------EERLIDGILYAFQEQTTE--D----SVMLLGFGTV 785 (1172)
T ss_pred HHHHHHHhccccccccHHH--------------------------HHHHHHHHHHHHHhcccc--h----hhhhhhHHHH
Confidence 2222223345555544311 122344777777643211 1 2457889999
Q ss_pred HHHhccccccchhhHHHHHHHHhcC--CCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhccc
Q 000134 527 IEMIGSHLTTYVPKILVLLMHAINK--ESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLE 593 (2096)
Q Consensus 527 i~l~g~~v~~~~pqI~a~L~~aL~~--~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~ 593 (2096)
..-+|+.+..++||||.+..--|++ +..|..+.+.-..+...|.. |.+ +.++...-++|.-|+.
T Consensus 786 ~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlkt-c~e--e~~m~~lGvvLyEylg 851 (1172)
T KOG0213|consen 786 VNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKT-CGE--EKLMGHLGVVLYEYLG 851 (1172)
T ss_pred HHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHh-ccH--HHHHHHhhHHHHHhcC
Confidence 9999999999999999998888874 44677777666665555543 221 2334444455666664
No 81
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=93.34 E-value=62 Score=49.32 Aligned_cols=387 Identities=12% Similarity=0.094 Sum_probs=179.4
Q ss_pred CChhHHHHHHHHHHHHHhhhcccchh-H-HHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccchhhhhhhh
Q 000134 253 DDPLILETLLESTAELMMAVDVHSQH-F-LFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNE 330 (2096)
Q Consensus 253 ~d~~i~eTll~~~~~i~~~~~~~~e~-~-~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~~~ 330 (2096)
.++++++-.+.+++-|....+.+... . .-++-.|+..|.+++.-++-.|..-|.++|.+. .+--..+. +..
T Consensus 458 ~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~-~qir~iV~------~aG 530 (2102)
T PLN03200 458 SSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHS-EDIRACVE------SAG 530 (2102)
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCc-HHHHHHHH------HCC
Confidence 56778888888888874322221111 1 123456888889999999999999999998742 11000110 112
Q ss_pred hhHHHHHHhcCchHHHH-----HHHHHHhCCChHHHHHhhcccccchhhh--ccccChhHHHHHHHHHHHcC---C-Cch
Q 000134 331 LFDYLSVRLASRPIMVR-----EFAEAAFGVETEELVKKMIPAVLPKLVV--SQQDNDQAVNIINELAKCLN---T-DMV 399 (2096)
Q Consensus 331 l~~~~~~~l~~rp~~~~-----~~~e~llg~~~~~fL~~~~~~~LP~LVl--~~~~~~~~~~~i~~ia~~~~---~-~~~ 399 (2096)
..+++++-|.+....++ .++. ++....++ ++|.|+- ..+........++.|+..+. . +.+
T Consensus 531 AIppLV~LL~sgd~~~q~~Aa~AL~n-Li~~~d~~--------~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~ 601 (2102)
T PLN03200 531 AVPALLWLLKNGGPKGQEIAAKTLTK-LVRTADAA--------TISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLV 601 (2102)
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHH-HHhccchh--------HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHH
Confidence 24455555554322222 2222 22212111 2222221 11111111123333333222 1 111
Q ss_pred hH--HhhhHHHHHHHHhccccHH---HHHHHHHHHhhhcCCChHHHH-HHhhHHHHHHHHHhhcCCCchhHhhhhcchhH
Q 000134 400 PL--IVTWIPKVLAFALHQADER---RLLSALEFYCIQTGSDNQEIF-AAALPALLDELICFVDGGDSDEINERLNRVPR 473 (2096)
Q Consensus 400 ~l--~~~~~~~Ila~ll~~~~~~---~~~~~l~~~~~~~~~~~~~~~-~~~~~~~l~eLl~~~~~~~~~~~~~~~~~~~~ 473 (2096)
.- ..+..-..|..|+...+++ ....+|.-+.+......+.++ ...+|.++ +|+. .++.+.. +. ...
T Consensus 602 ~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV-~LLs---s~~~~v~-ke---AA~ 673 (2102)
T PLN03200 602 REGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCI-KLLT---NNTEAVA-TQ---SAR 673 (2102)
T ss_pred HHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHH-HHHh---cCChHHH-HH---HHH
Confidence 11 1233444555566555543 344444433322111122333 35556666 4433 2332221 11 233
Q ss_pred HHHHHhhhccCC-CChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhccc----cccchhhHHHHHHHH
Q 000134 474 VIRKVSTVLTGN-EDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSH----LTTYVPKILVLLMHA 548 (2096)
Q Consensus 474 ~~~~~~~~~~~~-~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~~----v~~~~pqI~a~L~~a 548 (2096)
++-.+.+ .+. +....+++.. .+.-+- .++..++...+..++.+|+.+.+.-... -..++|.++..|+++
T Consensus 674 AL~nL~~--~~~~~q~~~~v~~G---aV~pL~-~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G 747 (2102)
T PLN03200 674 ALAALSR--SIKENRKVSYAAED---AIKPLI-KLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREG 747 (2102)
T ss_pred HHHHHHh--CCCHHHHHHHHHcC---CHHHHH-HHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhC
Confidence 3333332 112 1223333332 222222 1334556777888999999887754221 235678899999887
Q ss_pred hcCCCcchhhhHHHHHHHHHhccCCCcc-hhhHHHH--HHHHhhhccccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhc
Q 000134 549 INKESLQCEGLSVLHFFIEQLSRVSPSS-TKHVISQ--VFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHI 625 (2096)
Q Consensus 549 L~~~~L~~~~l~~W~~fv~~L~~~~~~~-l~~ll~~--i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i 625 (2096)
.++-+..|..+-..+++.-. .++ +...+.. ++..++.+++.-+-+ ....-.|.+.|.+|...... ...
T Consensus 748 --~~~~k~~Aa~AL~~L~~~~~---~~~~~~~~~~~~g~v~~l~~~L~~~~~~-~~~~~~al~~l~~l~~~~~~---~~~ 818 (2102)
T PLN03200 748 --TLEGKRNAARALAQLLKHFP---VDDVLKDSVQCRGTVLALVDLLNSTDLD-SSATSEALEALALLARTKGG---ANF 818 (2102)
T ss_pred --ChHHHHHHHHHHHHHHhCCC---hhHHHHHHHHHhCcHHHHHHHHhcCCcc-hhhHHHHHHHHHHHHhhccc---CCC
Confidence 45567777666666666532 123 2222221 233334444433211 11222466666665432110 011
Q ss_pred ccCCCCCChhhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHh
Q 000134 626 HEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALIN 695 (2096)
Q Consensus 626 ~~lp~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~~l~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~ 695 (2096)
.. |.+. ++-+..+ -|.-+++.+.|+|+.|-.-|..=|.++.+....-+.+++.
T Consensus 819 ~~-------~~~~----~~~e~p~------~l~~l~~~l~~~~p~~~~kai~il~~~~~~~~~~~~~~~~ 871 (2102)
T PLN03200 819 SH-------PPWA----VLAEVPS------SLEPLVRCLAEGHPLVQDKAIEILSRLCRDQPVVLGDLIA 871 (2102)
T ss_pred CC-------Cchh----hHHhccC------chHHHHHHHHcCChHHHHHHHHHHHHHhccChhHHHHHHh
Confidence 11 1111 1111111 2334456668888888888888888777666554444443
No 82
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=93.30 E-value=0.19 Score=46.90 Aligned_cols=60 Identities=15% Similarity=0.169 Sum_probs=50.9
Q ss_pred HHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccCh
Q 000134 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIP 1179 (2096)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p 1179 (2096)
+...+...|+|++|..+|+.+++..|++.+...++=.|+...|+++......+......|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 456788999999999999999999999999999999999999999988777666554444
No 83
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=93.14 E-value=5.3 Score=45.52 Aligned_cols=151 Identities=13% Similarity=0.106 Sum_probs=98.8
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH--hccCC----hh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----LQ 1118 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~--~~~~s----l~ 1118 (2096)
.++.....-+.|..|+.+++..+...+. ....+..+..+|...+++|........ ...+. ..
T Consensus 36 ~la~~~~~~~~~~~A~~~~~~~l~~~p~------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 103 (234)
T TIGR02521 36 QLALGYLEQGDLEVAKENLDKALEHDPD------------DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLN 103 (234)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence 4678888899999999999987654211 123456788888888988877776542 11121 11
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHHccC--CCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhc
Q 000134 1119 DELLSNKKSGNWAEVFTSCEQALQME--PTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRL 1196 (2096)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~--p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrl 1196 (2096)
.....+...|++++|..+|+++++.. +........+-.|+...|+++......+......|+... .......+....
T Consensus 104 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~la~~~~~~ 182 (234)
T TIGR02521 104 NYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPE-SLLELAELYYLR 182 (234)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChH-HHHHHHHHHHHc
Confidence 23445678899999999999888643 333444555667788889888777766655554444322 222334666778
Q ss_pred CChhhHHHhhcc
Q 000134 1197 GRWDLMDEYLSG 1208 (2096)
Q Consensus 1197 g~Wd~l~~~l~~ 1208 (2096)
|+|+.-.+++..
T Consensus 183 ~~~~~A~~~~~~ 194 (234)
T TIGR02521 183 GQYKDARAYLER 194 (234)
T ss_pred CCHHHHHHHHHH
Confidence 888776665554
No 84
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.07 E-value=0.84 Score=58.76 Aligned_cols=189 Identities=15% Similarity=0.116 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCh--
Q 000134 1305 LKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAPN-- 1382 (2096)
Q Consensus 1305 ~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~~~-- 1382 (2096)
...+.+.+.|++|=+.- .-|.+=+..+.. +.+-.+.|+..|-.--..|..+.|..+-.+|.++++..
T Consensus 117 e~ysn~aN~~kerg~~~--------~al~~y~~aiel---~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~c 185 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQ--------DALALYRAAIEL---KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYC 185 (966)
T ss_pred HHHHHHHHHHHHhchHH--------HHHHHHHHHHhc---CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhh
Confidence 34556778898885322 122222333332 24557789999999999999999999999999887643
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHH
Q 000134 1383 VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIH 1462 (2096)
Q Consensus 1383 ~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~ 1462 (2096)
+.-.-..|+-++|.-++|-.+-.++|..-|.. |-++--+|--..
T Consensus 186 a~s~lgnLlka~Grl~ea~~cYlkAi~~qp~f------------------------------------AiawsnLg~~f~ 229 (966)
T KOG4626|consen 186 ARSDLGNLLKAEGRLEEAKACYLKAIETQPCF------------------------------------AIAWSNLGCVFN 229 (966)
T ss_pred hhcchhHHHHhhcccchhHHHHHHHHhhCCce------------------------------------eeeehhcchHHh
Confidence 23334567888899999999888887643211 111222222223
Q ss_pred HhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHH--HHHhhhhhcccCCcchhh----------hhchHHHHHH
Q 000134 1463 YTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLV--DARKRQEENSEIGPSEKR----------WWFYVPDVLL 1530 (2096)
Q Consensus 1463 ~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~--~~~~~~e~~~~~g~~~~~----------~~~~l~~ai~ 1530 (2096)
++|. ....+.+|.+|++++|..-.+|+.||.-|..... .+-.+.+......+.... -+..+..||.
T Consensus 230 ~~Ge--i~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~ 307 (966)
T KOG4626|consen 230 AQGE--IWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAID 307 (966)
T ss_pred hcch--HHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHH
Confidence 3332 5567899999999999999999999998876531 111110000001110000 0124567899
Q ss_pred HHHHhhccCCcc
Q 000134 1531 FYAKGLHRGHKN 1542 (2096)
Q Consensus 1531 ~Y~~sl~~g~~~ 1542 (2096)
+|-+++...+.+
T Consensus 308 ~Ykral~~~P~F 319 (966)
T KOG4626|consen 308 TYKRALELQPNF 319 (966)
T ss_pred HHHHHHhcCCCc
Confidence 999999888764
No 85
>PLN03218 maturation of RBCL 1; Provisional
Probab=92.87 E-value=68 Score=46.61 Aligned_cols=303 Identities=10% Similarity=0.059 Sum_probs=167.1
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhc----cCC--
Q 000134 1043 KVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHK----SLS-- 1116 (2096)
Q Consensus 1043 ~~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~----~~s-- 1116 (2096)
+..|..+-.+||.+..|+..++.-.... ..| ....+..|+..|.+.++.|.+..+..... .++
T Consensus 475 ynsLI~~y~k~G~vd~A~~vf~eM~~~G---v~P--------dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~v 543 (1060)
T PLN03218 475 YTTLISTCAKSGKVDAMFEVFHEMVNAG---VEA--------NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRV 543 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcC---CCC--------CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHH
Confidence 4567778889999999999998754321 111 23578999999999999999888865321 122
Q ss_pred -hhHHHHHhHhhcCHHHHHHHHHHHHcc----CCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHH
Q 000134 1117 -LQDELLSNKKSGNWAEVFTSCEQALQM----EPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQ 1191 (2096)
Q Consensus 1117 -l~~qil~~E~~G~W~~A~~~YE~~Lq~----~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vE 1191 (2096)
...-|-.+-+.|++++|...|+..... .|+. ....-+++++.+.|+++.+....+.+...........+...+.
T Consensus 544 TYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~-vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ 622 (1060)
T PLN03218 544 VFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH-ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN 622 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence 233456788999999999999987642 4553 3455789999999999988777776654321111222334566
Q ss_pred HHHhcCChhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhh
Q 000134 1192 AAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAY 1271 (2096)
Q Consensus 1192 AAWrlg~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y 1271 (2096)
+--+.|+|+...+.+..+...|.. ++......+..++ .+.++.++..+.++.++..- +. ....+|..-.
T Consensus 623 ay~k~G~~deAl~lf~eM~~~Gv~-----PD~~TynsLI~a~--~k~G~~eeA~~l~~eM~k~G---~~-pd~~tynsLI 691 (1060)
T PLN03218 623 SCSQKGDWDFALSIYDDMKKKGVK-----PDEVFFSALVDVA--GHAGDLDKAFEILQDARKQG---IK-LGTVSYSSLM 691 (1060)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHH--HhCCCHHHHHHHHHHHHHcC---CC-CCHHHHHHHH
Confidence 667889998888877766554311 2211111222222 23455555555555444321 11 1122444333
Q ss_pred HHHHHhhhhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHH
Q 000134 1272 PFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNC 1351 (2096)
Q Consensus 1272 ~~l~kLH~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~ 1351 (2096)
....+.-.+.|..++..-+.. ....++... |..=+......-...+-+--++.. . ..+...+ ..+
T Consensus 692 ~ay~k~G~~eeA~~lf~eM~~-----~g~~Pdvvt-------yN~LI~gy~k~G~~eeAlelf~eM-~-~~Gi~Pd-~~T 756 (1060)
T PLN03218 692 GACSNAKNWKKALELYEDIKS-----IKLRPTVST-------MNALITALCEGNQLPKALEVLSEM-K-RLGLCPN-TIT 756 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHH-----cCCCCCHHH-------HHHHHHHHHHCCCHHHHHHHHHHH-H-HcCCCCC-HHH
Confidence 444444333333333222110 001111111 222222111111111111111111 0 1122222 346
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-CChH
Q 000134 1352 WLQYAKLCRLAGHYETATRAILEAQASG-APNV 1383 (2096)
Q Consensus 1352 WL~~AklARKag~~~~A~~all~a~~~~-~~~~ 1383 (2096)
|-.....+.+.|.++.|...+.++.+.+ .|+.
T Consensus 757 y~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~ 789 (1060)
T PLN03218 757 YSILLVASERKDDADVGLDLLSQAKEDGIKPNL 789 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 6667788999999999999999988776 3443
No 86
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=92.63 E-value=3 Score=47.62 Aligned_cols=151 Identities=12% Similarity=0.067 Sum_probs=106.8
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH-hccC-------
Q 000134 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL-HKSL------- 1115 (2096)
Q Consensus 1044 ~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~-~~~~------- 1115 (2096)
..++.....-+.|..|+-+++..+...+. ....+..+..+|...+++|........ ....
T Consensus 69 ~~la~~~~~~~~~~~A~~~~~~al~~~~~------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 136 (234)
T TIGR02521 69 LALALYYQQLGELEKAEDSFRRALTLNPN------------NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPAR 136 (234)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchH
Confidence 35678888889999999999988764211 123566788899999999887776542 1111
Q ss_pred ChhHHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHh
Q 000134 1116 SLQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWR 1195 (2096)
Q Consensus 1116 sl~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWr 1195 (2096)
........+...|++++|..+|+++++..|++......+-.++...|+++....+.+......|.. .............
T Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 215 (234)
T TIGR02521 137 SLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQT-AESLWLGIRIARA 215 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Confidence 111234567889999999999999999999988877788889999999998777666544333322 2222345667778
Q ss_pred cCChhhHHHhhc
Q 000134 1196 LGRWDLMDEYLS 1207 (2096)
Q Consensus 1196 lg~Wd~l~~~l~ 1207 (2096)
.|+++....+..
T Consensus 216 ~~~~~~a~~~~~ 227 (234)
T TIGR02521 216 LGDVAAAQRYGA 227 (234)
T ss_pred HhhHHHHHHHHH
Confidence 888887766543
No 87
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=92.51 E-value=0.93 Score=55.10 Aligned_cols=221 Identities=17% Similarity=0.135 Sum_probs=69.2
Q ss_pred hHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChhhHH
Q 000134 1124 NKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMD 1203 (2096)
Q Consensus 1124 ~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd~l~ 1203 (2096)
.+..|+++.|..+|++.++..+.+......++.. ...|+++.....++....+.+ ...+....++.+.+.|+|+.+.
T Consensus 54 a~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~--~~~~l~~~l~~~~~~~~~~~~~ 130 (280)
T PF13429_consen 54 AWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG--DPRYLLSALQLYYRLGDYDEAE 130 (280)
T ss_dssp -------------------------------------------------------------------H-HHHTT-HHHHH
T ss_pred cccccccccccccccccccccccccccccccccc-ccccccccccccccccccccc--ccchhhHHHHHHHHHhHHHHHH
Confidence 4678899999999999998887766555555555 567888877776655433332 2233345667788999999999
Q ss_pred HhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHHHHhhhhhHH
Q 000134 1204 EYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLHLLQEL 1283 (2096)
Q Consensus 1204 ~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~kLH~L~EL 1283 (2096)
+.+...... ...+.+..|.... +-.....|+..+..+.++++- - ..+.+.--+. .+ ++.+.+.
T Consensus 131 ~~l~~~~~~----~~~~~~~~~~~~~--a~~~~~~G~~~~A~~~~~~al---~----~~P~~~~~~~--~l--~~~li~~ 193 (280)
T PF13429_consen 131 ELLEKLEEL----PAAPDSARFWLAL--AEIYEQLGDPDKALRDYRKAL---E----LDPDDPDARN--AL--AWLLIDM 193 (280)
T ss_dssp HHHHHHHH-----T---T-HHHHHHH--HHHHHHCCHHHHHHHHHHHHH---H----H-TT-HHHHH--HH--HHHHCTT
T ss_pred HHHHHHHhc----cCCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHH---H----cCCCCHHHHH--HH--HHHHHHC
Confidence 888764421 0111222333333 333445555544333333221 1 1111110000 00 1111111
Q ss_pred HHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHcC
Q 000134 1284 EDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAG 1363 (2096)
Q Consensus 1284 ee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~AklARKag 1363 (2096)
. ...+...++..|.... .+ ....|..+|...-.-|
T Consensus 194 ~------------------~~~~~~~~l~~~~~~~---~~------------------------~~~~~~~la~~~~~lg 228 (280)
T PF13429_consen 194 G------------------DYDEAREALKRLLKAA---PD------------------------DPDLWDALAAAYLQLG 228 (280)
T ss_dssp C------------------HHHHHHHHHHHHHHH----HT------------------------SCCHCHHHHHHHHHHT
T ss_pred C------------------ChHHHHHHHHHHHHHC---cC------------------------HHHHHHHHHHHhcccc
Confidence 0 1112233444444433 11 1235677788888899
Q ss_pred ChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1364 HYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1364 ~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
+++.|...+.++.... +|.+....|..|+..|+.++|....+++..
T Consensus 229 ~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 229 RYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999987753 678999999999999999999999887754
No 88
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=92.25 E-value=1.5 Score=55.60 Aligned_cols=112 Identities=12% Similarity=0.029 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccC
Q 000134 1351 CWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLS 1428 (2096)
Q Consensus 1351 ~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~ 1428 (2096)
.+..-|.-|.+.|.++.|...+.+|.... .+.+....|..+...|+..+|+..+++++.-.|
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P---------------- 67 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP---------------- 67 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----------------
Confidence 46788999999999999999999998775 456888999999999999999999999876211
Q ss_pred CCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHH
Q 000134 1429 LVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDV 1500 (2096)
Q Consensus 1429 ~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l 1500 (2096)
..+.+++.+|.-+...|+ .++++..|.++++++|.....+..+++...++
T Consensus 68 --------------------~~~~a~~~lg~~~~~lg~--~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 68 --------------------SLAKAYLRKGTACMKLEE--YQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred --------------------CCHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 114456666665555544 78899999999999999888777776655444
No 89
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.23 E-value=71 Score=45.36 Aligned_cols=96 Identities=15% Similarity=0.193 Sum_probs=62.0
Q ss_pred CChHHHHHHHHHHHHHHHH--hccccccchhhHHHHHHHHhc--CCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHH
Q 000134 511 EDLSLQKQALKRIEILIEM--IGSHLTTYVPKILVLLMHAIN--KESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFA 586 (2096)
Q Consensus 511 ~~~~~k~~~l~sl~~li~l--~g~~v~~~~pqI~a~L~~aL~--~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~ 586 (2096)
.+...|+++-+=|++++.. +-..+....-.|+-.|..+++ ...-+...++||+.+++.++ .+.-.++...+.
T Consensus 666 ~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~----~e~~~~i~k~I~ 741 (1176)
T KOG1248|consen 666 SSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLS----AEHCDLIPKLIP 741 (1176)
T ss_pred ccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc----HHHHHHHHHHHH
Confidence 3456788888888888887 222456666777777777775 35577889999999999875 233233333222
Q ss_pred -HhhhccccCCCCchhhHHHHHHHHHHHH
Q 000134 587 -ALIPFLERDKDNPSVLLNKVVKILEDLV 614 (2096)
Q Consensus 587 -~lip~~~~~~~~~~~~~~~~~~il~~Li 614 (2096)
.++.+ . +.....++-+.++|.+|-
T Consensus 742 EvIL~~-K---e~n~~aR~~Af~lL~~i~ 766 (1176)
T KOG1248|consen 742 EVILSL-K---EVNVKARRNAFALLVFIG 766 (1176)
T ss_pred HHHHhc-c---cccHHHHhhHHHHHHHHH
Confidence 23333 2 333445777888887775
No 90
>PLN03077 Protein ECB2; Provisional
Probab=92.18 E-value=43 Score=47.71 Aligned_cols=322 Identities=9% Similarity=-0.002 Sum_probs=168.0
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhcc---CChhHH
Q 000134 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKS---LSLQDE 1120 (2096)
Q Consensus 1044 ~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~---~sl~~q 1120 (2096)
..+-.+..+.+.+..|...++.-.+..- .+ ....+..|++.|...++.|.+..+...... .+-+.-
T Consensus 393 ~~ll~a~~~~g~~~~a~~l~~~~~~~g~---~~--------~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~m 461 (857)
T PLN03077 393 ASVLSACACLGDLDVGVKLHELAERKGL---IS--------YVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSI 461 (857)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhCC---Cc--------chHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHH
Confidence 3455577788999999988887554321 11 224678999999999999999998764322 344556
Q ss_pred HHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChh
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWD 1200 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd 1200 (2096)
|..|.+.|++.+|+..|+..++.-+.+......+|.++-++|.++.......-+...--........--+.+-.+.|+++
T Consensus 462 i~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~ 541 (857)
T PLN03077 462 IAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMN 541 (857)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHH
Confidence 77889999999999999987754333434445677777777877644332211111100000011112234445566665
Q ss_pred hHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHHHHhhhh
Q 000134 1201 LMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLHLL 1280 (2096)
Q Consensus 1201 ~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~kLH~L 1280 (2096)
.-.+....... ...+|+. +..++ .++++..+..+..+++... .+.+. ..+|........+.-.+
T Consensus 542 ~A~~~f~~~~~---------d~~s~n~-lI~~~--~~~G~~~~A~~lf~~M~~~---g~~Pd-~~T~~~ll~a~~~~g~v 605 (857)
T PLN03077 542 YAWNQFNSHEK---------DVVSWNI-LLTGY--VAHGKGSMAVELFNRMVES---GVNPD-EVTFISLLCACSRSGMV 605 (857)
T ss_pred HHHHHHHhcCC---------ChhhHHH-HHHHH--HHcCCHHHHHHHHHHHHHc---CCCCC-cccHHHHHHHHhhcChH
Confidence 55444433321 1123432 22222 2455555544444443322 11111 11232222222222222
Q ss_pred hHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHHHHH
Q 000134 1281 QELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCR 1360 (2096)
Q Consensus 1281 ~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~AklAR 1360 (2096)
.|-.++.+.+.. ..+..++..-...+...+-+ .. ...|-.--++.. ....+ ...|-.....||
T Consensus 606 ~ea~~~f~~M~~----~~gi~P~~~~y~~lv~~l~r-~G------~~~eA~~~~~~m-----~~~pd-~~~~~aLl~ac~ 668 (857)
T PLN03077 606 TQGLEYFHSMEE----KYSITPNLKHYACVVDLLGR-AG------KLTEAYNFINKM-----PITPD-PAVWGALLNACR 668 (857)
T ss_pred HHHHHHHHHHHH----HhCCCCchHHHHHHHHHHHh-CC------CHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHH
Confidence 222222111110 00011111111111111111 00 001111001111 11112 567888888899
Q ss_pred HcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1361 LAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1361 Kag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
.+|..+.|..+..++.++.+ +..++--+.++-+.|+.++|.+..+..-+
T Consensus 669 ~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 669 IHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred HcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 99999999998888777653 45677778888899999999998877654
No 91
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=92.11 E-value=3.8 Score=47.62 Aligned_cols=115 Identities=15% Similarity=0.195 Sum_probs=81.8
Q ss_pred hhHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHH-HcCC--chHHHHH
Q 000134 1329 EPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLW-STRR--SDGAIAE 1403 (2096)
Q Consensus 1329 e~iLslRr~vl~~~~~~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW-~~g~--~~~Ai~~ 1403 (2096)
+-+..+++.+-. +.+..+.|...+++....|+++.|..++.+|..+. ++.+....|..++ ..|+ ..+|.+.
T Consensus 57 ~~i~~l~~~L~~----~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~ 132 (198)
T PRK10370 57 AQLQALQDKIRA----NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREM 132 (198)
T ss_pred HHHHHHHHHHHH----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 445556554321 22446789999999999999999999999999886 4667888899775 5566 4899999
Q ss_pred HHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 000134 1404 LQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQ 1483 (2096)
Q Consensus 1404 L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~ 1483 (2096)
++++++..|.+ ..++.++|--..+.|. .++.+..|+++.++.
T Consensus 133 l~~al~~dP~~------------------------------------~~al~~LA~~~~~~g~--~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 133 IDKALALDANE------------------------------------VTALMLLASDAFMQAD--YAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHhCCCC------------------------------------hhHHHHHHHHHHHcCC--HHHHHHHHHHHHhhC
Confidence 99998642211 2345555554444444 667778888887777
Q ss_pred cc
Q 000134 1484 PM 1485 (2096)
Q Consensus 1484 ~~ 1485 (2096)
|.
T Consensus 175 ~~ 176 (198)
T PRK10370 175 SP 176 (198)
T ss_pred CC
Confidence 64
No 92
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=91.69 E-value=0.33 Score=59.03 Aligned_cols=165 Identities=15% Similarity=0.178 Sum_probs=82.2
Q ss_pred HhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH-hccC--C-----hhHHHH
Q 000134 1051 FRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL-HKSL--S-----LQDELL 1122 (2096)
Q Consensus 1051 ~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~-~~~~--s-----l~~qil 1122 (2096)
..-+.|.+|+-++|.-++..+ + ...+..+..+|...++.+.+..+... .... . ......
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~---~----------~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~ 154 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYERDG---D----------PRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAE 154 (280)
T ss_dssp -------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHH
T ss_pred ccccccccccccccccccccc---c----------cchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 467888999999887665321 1 13456677889999999988888653 1111 1 123445
Q ss_pred HhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChhhH
Q 000134 1123 SNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLM 1202 (2096)
Q Consensus 1123 ~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd~l 1202 (2096)
.+++.|++++|..+|++++...|++.+...+++..+.+.|+.+.+...++.+....|....-|. .-..+-..+|+-+.-
T Consensus 155 ~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~-~la~~~~~lg~~~~A 233 (280)
T PF13429_consen 155 IYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWD-ALAAAYLQLGRYEEA 233 (280)
T ss_dssp HHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCH-HHHHHHHHHT-HHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHH-HHHHHhccccccccc
Confidence 6789999999999999999999999998889999999999998755555444333332222222 234566778887665
Q ss_pred HHhhcccCccCccccCCCCCcchhHHHHHHHHH
Q 000134 1203 DEYLSGADEEGLLCSSSESNASFDMDVAKILQA 1235 (2096)
Q Consensus 1203 ~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~a 1235 (2096)
-+++...-.. .+.+..+...+|.++..
T Consensus 234 l~~~~~~~~~------~p~d~~~~~~~a~~l~~ 260 (280)
T PF13429_consen 234 LEYLEKALKL------NPDDPLWLLAYADALEQ 260 (280)
T ss_dssp HHHHHHHHHH------STT-HHHHHHHHHHHT-
T ss_pred cccccccccc------ccccccccccccccccc
Confidence 5554432210 11234455556666543
No 93
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=91.27 E-value=28 Score=46.05 Aligned_cols=231 Identities=16% Similarity=0.237 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~ 1426 (2096)
...|++-+.+-+.+|..+.=..-+.+|-... .+-+-+=+||..|.-|+...|..+|.++++.+|..- . + -+.+
T Consensus 550 ~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnse-e---i-wlaa 624 (913)
T KOG0495|consen 550 KSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSE-E---I-WLAA 624 (913)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcH-H---H-HHHH
Confidence 3456666666666665554433333443332 233555566666666666666666666665333210 0 0 0000
Q ss_pred cCCCCCCCCCcccccccchhchhH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhh
Q 000134 1427 LSLVPLNPLPVLSNTQTLNEKRDI---------AKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497 (2096)
Q Consensus 1427 ~~~~~~~~~~~~~~~q~~~~~~~~---------Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~ 1497 (2096)
..+-.. ..|...-+.+. ++++.+.+...-..+ ..++.++...++++..|...|-|..+|+-+
T Consensus 625 vKle~e-------n~e~eraR~llakar~~sgTeRv~mKs~~~er~ld--~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~ 695 (913)
T KOG0495|consen 625 VKLEFE-------NDELERARDLLAKARSISGTERVWMKSANLERYLD--NVEEALRLLEEALKSFPDFHKLWLMLGQIE 695 (913)
T ss_pred HHHhhc-------cccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhh--hHHHHHHHHHHHHHhCCchHHHHHHHhHHH
Confidence 000000 00100001111 233444444333333 368888888999999999999999999987
Q ss_pred HHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcchhhhHHHHHHhhhhcCccccccCCCChhhhHhHHH
Q 000134 1498 DDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNG 1577 (2096)
Q Consensus 1498 d~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~~ 1577 (2096)
+.. ..+..+-..|..++..-+. ++| ||+..+....+. ....
T Consensus 696 e~~----------------------~~ie~aR~aY~~G~k~cP~----~ip----LWllLakleEk~---------~~~~ 736 (913)
T KOG0495|consen 696 EQM----------------------ENIEMAREAYLQGTKKCPN----SIP----LWLLLAKLEEKD---------GQLV 736 (913)
T ss_pred HHH----------------------HHHHHHHHHHHhccccCCC----Cch----HHHHHHHHHHHh---------cchh
Confidence 533 1234567778876655433 333 777655321111 1112
Q ss_pred HHHHHHHhhcCCCCCchhhhhhHHhhhccccCchHHHHHHHHHHHHHHHhchhhH-HHHH
Q 000134 1578 KVMSIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQG-LWIM 1636 (2096)
Q Consensus 1578 ~v~~~~~~~~~~iP~~~wl~~lPQLisRl~h~~~~v~~~l~~il~kv~~~yPqq~-lw~l 1636 (2096)
+-..++++..-+=|-.. +.||--+=-.+.+.| .+....++.+..+..|... +|.=
T Consensus 737 rAR~ildrarlkNPk~~-~lwle~Ir~ElR~gn---~~~a~~lmakALQecp~sg~LWaE 792 (913)
T KOG0495|consen 737 RARSILDRARLKNPKNA-LLWLESIRMELRAGN---KEQAELLMAKALQECPSSGLLWAE 792 (913)
T ss_pred hHHHHHHHHHhcCCCcc-hhHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCccchhHHH
Confidence 22344555444444322 223333344455666 4567788999999999887 4543
No 94
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=91.13 E-value=4.1 Score=44.72 Aligned_cols=107 Identities=8% Similarity=-0.052 Sum_probs=79.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCC
Q 000134 1352 WLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSL 1429 (2096)
Q Consensus 1352 WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~ 1429 (2096)
|...+..+...|+++.|.....++....+ +.+....|.++...|+..+|+..++.++.-.|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p----------------- 89 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA----------------- 89 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-----------------
Confidence 66778888999999999999888877754 46788899999999999999999998875211
Q ss_pred CCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhh
Q 000134 1430 VPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKY 1496 (2096)
Q Consensus 1430 ~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y 1496 (2096)
.+ +.++.-+|.-+...|+ .++.++.|.+|+++.|.-...|...|.-
T Consensus 90 --~~-----------------~~a~~~lg~~l~~~g~--~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 90 --SH-----------------PEPVYQTGVCLKMMGE--PGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred --CC-----------------cHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 10 2344555554444444 7888899999999999877666555443
No 95
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=91.04 E-value=3 Score=57.20 Aligned_cols=99 Identities=10% Similarity=0.014 Sum_probs=70.5
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhccCChhHHHHHh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSN 1124 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~~sl~~qil~~ 1124 (2096)
+||++.+++|.|.-|+..||..+.-..+ -...... -+...
T Consensus 91 ~La~i~~~~g~~~ea~~~l~~~~~~~Pd-------------------------------~~~a~~~---------~a~~L 130 (694)
T PRK15179 91 LVARALEAAHRSDEGLAVWRGIHQRFPD-------------------------------SSEAFIL---------MLRGV 130 (694)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHhhCCC-------------------------------cHHHHHH---------HHHHH
Confidence 6899999999999999999998754221 1111110 01123
Q ss_pred HhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhh
Q 000134 1125 KKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKK 1183 (2096)
Q Consensus 1125 E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~ 1183 (2096)
.+.++.++|+.+++++++..|++.+.+.-+=.||.++|+|+......+.++...|+...
T Consensus 131 ~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~ 189 (694)
T PRK15179 131 KRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFEN 189 (694)
T ss_pred HHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHH
Confidence 36678888888888888888888888887888888888888877777766655554433
No 96
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=90.98 E-value=0.44 Score=44.82 Aligned_cols=54 Identities=9% Similarity=0.204 Sum_probs=46.9
Q ss_pred HHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhcc-ChHHHHHHhhh
Q 000134 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMC-HLQAMVTHVDG 1173 (2096)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LG-q~~~ll~~~~g 1173 (2096)
....+...|+|++|..+|+++++..|++.....++=.|+..+| +++..+.+.+.
T Consensus 9 ~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 9 LGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 4556788999999999999999999999999999999999999 78877666554
No 97
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=90.95 E-value=18 Score=45.54 Aligned_cols=97 Identities=20% Similarity=0.124 Sum_probs=67.7
Q ss_pred HHHHHHHHHhhhccCCh--hhhhhHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC-hHHH
Q 000134 1309 KLMANWENRLKYTQPSL--WAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAP-NVHM 1385 (2096)
Q Consensus 1309 ~l~~~W~~RL~~~~~~~--~~~e~iLslRr~vl~~~~~~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~~-~~~i 1385 (2096)
.+...|+.||...-+.. ...+|++..=..-+.... +....|....++|+|++.+..|..++..|....+. +...
T Consensus 289 ~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~---~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~ 365 (400)
T COG3071 289 ALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHP---EDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYA 365 (400)
T ss_pred HHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCC---CChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHH
Confidence 45567777765444432 333444433222222221 22357899999999999999999999998887654 5677
Q ss_pred HHHHHHHHcCCchHHHHHHHHHh
Q 000134 1386 EKAKLLWSTRRSDGAIAELQQNL 1408 (2096)
Q Consensus 1386 E~AKLLW~~g~~~~Ai~~L~~~i 1408 (2096)
+-|+.+=+.|+..+|=+.=+.++
T Consensus 366 ~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 366 ELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHcCChHHHHHHHHHHH
Confidence 88999999999999988777765
No 98
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=90.48 E-value=7.8 Score=45.62 Aligned_cols=177 Identities=18% Similarity=0.246 Sum_probs=101.9
Q ss_pred CChHHHHHHHHHHHHHHHHhccccccchhhHHHHHH-------HHhc--CCCcchhhhHHHHHHHHHhccCCCcchhhHH
Q 000134 511 EDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLM-------HAIN--KESLQCEGLSVLHFFIEQLSRVSPSSTKHVI 581 (2096)
Q Consensus 511 ~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~-------~aL~--~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll 581 (2096)
.+-..|..+|..|..+++--. -....+.+..+|+ ..+. ...+...|+.++..+...+.. ++++++
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~--~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~----~~~~~~ 92 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNA--PEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS----HFEPYA 92 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-------HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG----GGHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCC--ccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH----hHHHHH
Confidence 345666777777777766441 1123333333333 3332 234667888999999999863 599999
Q ss_pred HHHHHHhhhccccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCChhhhHHHHHHHHHhcCCCCHHHHHHHHH
Q 000134 582 SQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAV 661 (2096)
Q Consensus 582 ~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~ 661 (2096)
+.++..|+.... +....+++.|...|..++.... +.+.+ .+..+.
T Consensus 93 ~~~l~~Ll~~~~---~~~~~i~~~a~~~L~~i~~~~~-----------~~~~~---------------------~~~~l~ 137 (228)
T PF12348_consen 93 DILLPPLLKKLG---DSKKFIREAANNALDAIIESCS-----------YSPKI---------------------LLEILS 137 (228)
T ss_dssp HHHHHHHHHGGG------HHHHHHHHHHHHHHHTTS------------H--HH---------------------HHHHHH
T ss_pred HHHHHHHHHHHc---cccHHHHHHHHHHHHHHHHHCC-----------cHHHH---------------------HHHHHH
Confidence 999988887776 3333455666666665543211 01111 123455
Q ss_pred hhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhccc
Q 000134 662 DGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGAL 739 (2096)
Q Consensus 662 ~~l~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~I 739 (2096)
..++|.|+.||..++.-|...+......-. .......+.+++..+..+-.+.+ +++|..+-+|+..+
T Consensus 138 ~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~------~l~~~~~~~~l~~~l~~~l~D~~-----~~VR~~Ar~~~~~l 204 (228)
T PF12348_consen 138 QGLKSKNPQVREECAEWLAIILEKWGSDSS------VLQKSAFLKQLVKALVKLLSDAD-----PEVREAARECLWAL 204 (228)
T ss_dssp HHTT-S-HHHHHHHHHHHHHHHTT-----G------GG--HHHHHHHHHHHHHHHTSS------HHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHccchHh------hhcccchHHHHHHHHHHHCCCCC-----HHHHHHHHHHHHHH
Confidence 677899999999999999999988761100 00111235667777766666543 68999999998876
No 99
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=90.31 E-value=3.2 Score=45.56 Aligned_cols=110 Identities=7% Similarity=0.076 Sum_probs=76.0
Q ss_pred HHHHhhcCCChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhchhHH
Q 000134 1372 ILEAQASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIA 1451 (2096)
Q Consensus 1372 ll~a~~~~~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~A 1451 (2096)
+.+|.+.. |......+..+...|+.++|+..++.++...|. .+
T Consensus 16 ~~~al~~~-p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~------------------------------------~~ 58 (144)
T PRK15359 16 LKQLLSVD-PETVYASGYASWQEGDYSRAVIDFSWLVMAQPW------------------------------------SW 58 (144)
T ss_pred HHHHHHcC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------------------------------------cH
Confidence 33444333 444556789999999999999999998753221 02
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHH
Q 000134 1452 KTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLF 1531 (2096)
Q Consensus 1452 ka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~ 1531 (2096)
.++..+|.-....|+ .++.+..|.+|++++|.+..+|+.+|..+... |. ...|+..
T Consensus 59 ~a~~~lg~~~~~~g~--~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~--------------g~--------~~eAi~~ 114 (144)
T PRK15359 59 RAHIALAGTWMMLKE--YTTAINFYGHALMLDASHPEPVYQTGVCLKMM--------------GE--------PGLAREA 114 (144)
T ss_pred HHHHHHHHHHHHHhh--HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc--------------CC--------HHHHHHH
Confidence 234444443333333 56788999999999999999999999976432 11 2358999
Q ss_pred HHHhhccCCcc
Q 000134 1532 YAKGLHRGHKN 1542 (2096)
Q Consensus 1532 Y~~sl~~g~~~ 1542 (2096)
|-+++...+.+
T Consensus 115 ~~~Al~~~p~~ 125 (144)
T PRK15359 115 FQTAIKMSYAD 125 (144)
T ss_pred HHHHHHhCCCC
Confidence 99999887764
No 100
>PRK11189 lipoprotein NlpI; Provisional
Probab=90.26 E-value=12 Score=46.35 Aligned_cols=35 Identities=20% Similarity=0.158 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCh
Q 000134 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASGAPN 1382 (2096)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~all~a~~~~~~~ 1382 (2096)
..+.|...+++..+.|+++.|..+..+|...++++
T Consensus 235 ~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 235 LCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 46689999999999999999999999998877554
No 101
>PRK09687 putative lyase; Provisional
Probab=90.23 E-value=3 Score=51.08 Aligned_cols=58 Identities=17% Similarity=0.114 Sum_probs=30.8
Q ss_pred HHHHhhhcccchhhhhhhhhhchhhhhhhcCccchHHHHHHHhhhchhhhhhhhhhccchhhhhh
Q 000134 6 SEILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFPISFGFLS 70 (2096)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (2096)
.+.|--.|.|+...||.+|+..+.-+ .+ ..+|..+..+.+++...|++.-...||.|.
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~---~~----~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg 82 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLR---GG----QDVFRLAIELCSSKNPIERDIGADILSQLG 82 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhc---Cc----chHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 34444455666666666666554322 22 234444444555555566666666666654
No 102
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=89.74 E-value=86 Score=41.89 Aligned_cols=365 Identities=14% Similarity=0.155 Sum_probs=173.7
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccchh
Q 000134 245 IKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKA 324 (2096)
Q Consensus 245 ~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~ 324 (2096)
++..+... +++..+.+...+..++.+. ...++.....-.|..-|-|+++.||..|.++|.+++.+. .+..+++..
T Consensus 43 lf~~L~~~-~~e~v~~~~~iL~~~l~~~-~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~-~~~~~~~~~-- 117 (503)
T PF10508_consen 43 LFDCLNTS-NREQVELICDILKRLLSAL-SPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHS-EGAAQLLVD-- 117 (503)
T ss_pred HHHHHhhc-ChHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-HHHHHHhcC--
Confidence 44545544 4444555567788887755 344446677788999999999999999999998886544 221222221
Q ss_pred hhhhhhhhHHHHHHhcCchHHHHHHHHHHhCCChHHHHHhhcccccchhhhccccChhHHHHHHHHHHHcCCCchhHHhh
Q 000134 325 VLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVKKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVT 404 (2096)
Q Consensus 325 ~~~~~~l~~~~~~~l~~rp~~~~~~~e~llg~~~~~fL~~~~~~~LP~LVl~~~~~~~~~~~i~~ia~~~~~~~~~l~~~ 404 (2096)
+.+++.++..+...--.+.+.| .++|..||+. ......++.+
T Consensus 118 ----~~l~~~i~~~L~~~d~~Va~~A---------------------------------~~~L~~l~~~-~~~~~~l~~~ 159 (503)
T PF10508_consen 118 ----NELLPLIIQCLRDPDLSVAKAA---------------------------------IKALKKLASH-PEGLEQLFDS 159 (503)
T ss_pred ----ccHHHHHHHHHcCCcHHHHHHH---------------------------------HHHHHHHhCC-chhHHHHhCc
Confidence 2234444444433322233222 1233333321 1112223333
Q ss_pred hHHHHHHHHhccccHHHHHHHHHHHhhhcCCChH--HHHH--HhhHHHHHHHHHhhcCCCchhHhhhhcchhHHHHHHhh
Q 000134 405 WIPKVLAFALHQADERRLLSALEFYCIQTGSDNQ--EIFA--AALPALLDELICFVDGGDSDEINERLNRVPRVIRKVST 480 (2096)
Q Consensus 405 ~~~~Ila~ll~~~~~~~~~~~l~~~~~~~~~~~~--~~~~--~~~~~~l~eLl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (2096)
++...|.-++.+++...-..++..+......+.. +... ..++.++.|| ... |.=.+ ..+.+.+..++.
T Consensus 160 ~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL----~~d--DiLvq--lnalell~~La~ 231 (503)
T PF10508_consen 160 NLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKEL----DSD--DILVQ--LNALELLSELAE 231 (503)
T ss_pred chHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHh----cCc--cHHHH--HHHHHHHHHHHc
Confidence 3333333344332222222233332222222211 1111 1233333333 332 21111 123444444442
Q ss_pred hccCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHH------HHHHHHHHHHHhcc-ccccchhhHHHHHHHHhc--C
Q 000134 481 VLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQ------ALKRIEILIEMIGS-HLTTYVPKILVLLMHAIN--K 551 (2096)
Q Consensus 481 ~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~------~l~sl~~li~l~g~-~v~~~~pqI~a~L~~aL~--~ 551 (2096)
...-..||.+. |++..+.+.+.++..-+ +-. .|+..|.|-.. .+ .+....|+++.+|...++ .
T Consensus 232 ----~~~g~~yL~~~--gi~~~L~~~l~~~~~dp-~~~~~~l~g~~~f~g~la~~-~~~~v~~~~p~~~~~l~~~~~s~d 303 (503)
T PF10508_consen 232 ----TPHGLQYLEQQ--GIFDKLSNLLQDSEEDP-RLSSLLLPGRMKFFGNLARV-SPQEVLELYPAFLERLFSMLESQD 303 (503)
T ss_pred ----ChhHHHHHHhC--CHHHHHHHHHhccccCC-cccchhhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHhCCCC
Confidence 34446777775 77766665554432111 111 23444554444 33 566677999999998775 5
Q ss_pred CCcchhhhHHHHHHHHHhccCCCcch----hhHHHHHHHHhhhccccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhccc
Q 000134 552 ESLQCEGLSVLHFFIEQLSRVSPSST----KHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHE 627 (2096)
Q Consensus 552 ~~L~~~~l~~W~~fv~~L~~~~~~~l----~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~ 627 (2096)
+..+..|+.+|..+-.+.+.. .-| ++-+..++..+-.+.. ..+...+-.+.+-|..++.-
T Consensus 304 ~~~~~~A~dtlg~igst~~G~--~~L~~~~~~~~~~~l~~~~~~~~---~~~~~lk~r~l~al~~il~~----------- 367 (503)
T PF10508_consen 304 PTIREVAFDTLGQIGSTVEGK--QLLLQKQGPAMKHVLKAIGDAIK---SGSTELKLRALHALASILTS----------- 367 (503)
T ss_pred hhHHHHHHHHHHHHhCCHHHH--HHHHhhcchHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHHHhc-----------
Confidence 668889999999876653220 111 1112222222222222 22223344455555444311
Q ss_pred CCCCCChhhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHH
Q 000134 628 FPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSE 688 (2096)
Q Consensus 628 lp~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~~l~~en~~Vr~~aL~eL~~~L~~~~~ 688 (2096)
+.-+.-..+..+....-+.-+.-+... .++..++.-=+++|.-|+.=|..+..+.-.
T Consensus 368 -~~~~~~~~i~~~~~~w~~~~~~~~~~~---~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg 424 (503)
T PF10508_consen 368 -GTDRQDNDILSITESWYESLSGSPLSN---LLMSLLKQPFPELRCAAYRLLQALAAQPWG 424 (503)
T ss_pred -CCCCchHHHHHHHHHHHHHhcCCchHH---HHHHHhcCCchHHHHHHHHHHHHHhcCHHH
Confidence 111111222222222222222222222 455556554478899888888887776543
No 103
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=89.64 E-value=1.5 Score=46.72 Aligned_cols=83 Identities=13% Similarity=0.142 Sum_probs=63.7
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHHccCCCc---hhhhhhHHHHHHhccChHHHHHHhhhhhccChh--hhhhHhHHHHHHH
Q 000134 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTS---VQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ--YKKTWCMQGVQAA 1193 (2096)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~---~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~--~~~~~~~~~vEAA 1193 (2096)
+....|...|+.++|...|++++....+. ....+++=.++.++|+++..+...+......|+ +...+..+..-+.
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 34567889999999999999999976554 345678888999999999888777766666554 3344555666788
Q ss_pred HhcCChhh
Q 000134 1194 WRLGRWDL 1201 (2096)
Q Consensus 1194 Wrlg~Wd~ 1201 (2096)
+..|+++.
T Consensus 86 ~~~gr~~e 93 (120)
T PF12688_consen 86 YNLGRPKE 93 (120)
T ss_pred HHCCCHHH
Confidence 89999865
No 104
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=89.00 E-value=4.9 Score=41.33 Aligned_cols=103 Identities=18% Similarity=0.176 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCC-----ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000134 1350 NCWLQYAKLCRLAGHYETATRAILEAQASGA-----PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2096)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~all~a~~~~~-----~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~ 1424 (2096)
+.+...+....+.|.++.|...+.++....+ +.+.+..+..+.+.|+..+|+..++..+...|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----------- 71 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK----------- 71 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC-----------
Confidence 5678889999999999999999988876543 347888999999999999999999988753221
Q ss_pred cccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchH
Q 000134 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWE 1487 (2096)
Q Consensus 1425 ~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~we 1487 (2096)
. +..+.+++.+|..+...++ .++..+.|.++++..|...
T Consensus 72 --------~--------------~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 72 --------S--------------PKAPDALLKLGMSLQELGD--KEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred --------C--------------CcccHHHHHHHHHHHHhCC--hHHHHHHHHHHHHHCcCCh
Confidence 0 0113345566665555443 6778888899988888654
No 105
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=88.90 E-value=1.3 Score=41.60 Aligned_cols=62 Identities=15% Similarity=0.205 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcC-CchHHHHHHHHHhh
Q 000134 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTR-RSDGAIAELQQNLL 1409 (2096)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g-~~~~Ai~~L~~~i~ 1409 (2096)
.+..|...|....+.|.++.|.....+|.++.+ +.+..-.+..++..| +..+|++.++++++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 467899999999999999999999999998865 457889999999999 68999999999876
No 106
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=88.50 E-value=4.4 Score=51.85 Aligned_cols=115 Identities=17% Similarity=0.250 Sum_probs=85.8
Q ss_pred CCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000134 1344 LGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2096)
Q Consensus 1344 ~~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~ 1423 (2096)
.+..+.+..+++- ...++++.|.+.+.+..+. .|++.+--||++-..++..+|++.++++++..|..
T Consensus 167 ~~NyLv~~Ll~~l---~~t~~~~~ai~lle~L~~~-~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d--------- 233 (395)
T PF09295_consen 167 VNNYLVDTLLKYL---SLTQRYDEAIELLEKLRER-DPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQD--------- 233 (395)
T ss_pred cchHHHHHHHHHH---hhcccHHHHHHHHHHHHhc-CCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC---------
Confidence 3445555555554 4467899999888887654 47777778999999999999999999998643210
Q ss_pred ccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHH
Q 000134 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDV 1500 (2096)
Q Consensus 1424 ~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l 1500 (2096)
+..+...++++...++ .+.+.+..++|+++.|.--++|+.||+.|=++
T Consensus 234 ---------------------------~~LL~~Qa~fLl~k~~--~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~ 281 (395)
T PF09295_consen 234 ---------------------------SELLNLQAEFLLSKKK--YELALEIAKKAVELSPSEFETWYQLAECYIQL 281 (395)
T ss_pred ---------------------------HHHHHHHHHHHHhcCC--HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc
Confidence 3345555666665554 47888899999999999999999999998543
No 107
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.50 E-value=2.7 Score=50.76 Aligned_cols=98 Identities=16% Similarity=0.063 Sum_probs=76.2
Q ss_pred HHHHcCChHHHHHHHHHHhhcCCCh--HHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCC
Q 000134 1358 LCRLAGHYETATRAILEAQASGAPN--VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPL 1435 (2096)
Q Consensus 1358 lARKag~~~~A~~all~a~~~~~~~--~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1435 (2096)
=+-|+|.|+.|..--.+|..+.+.+ .+--+|--+-+-|+...||+-.+.+|.-
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i------------------------- 144 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI------------------------- 144 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc-------------------------
Confidence 3568899999999999999987554 4557899999999999999999887651
Q ss_pred CcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHH
Q 000134 1436 PVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYM 1493 (2096)
Q Consensus 1436 ~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~l 1493 (2096)
++...|+|..+|.-.... ...++.+..|++|++++|.|+-.+-.|
T Consensus 145 -----------Dp~yskay~RLG~A~~~~--gk~~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 145 -----------DPHYSKAYGRLGLAYLAL--GKYEEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred -----------ChHHHHHHHHHHHHHHcc--CcHHHHHHHHHhhhccCCCcHHHHHHH
Confidence 123478888888765444 447888888999999999998444333
No 108
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=88.26 E-value=12 Score=53.36 Aligned_cols=149 Identities=13% Similarity=0.135 Sum_probs=99.1
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH-h-ccCChhH-HH
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL-H-KSLSLQD-EL 1121 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~-~-~~~sl~~-qi 1121 (2096)
.++.+..+.|.|..|+.+++.-.... | .....-.+..++.+.++++........ . ..++... ..
T Consensus 514 ~lA~al~~~Gr~eeAi~~~rka~~~~-----p--------~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~ 580 (987)
T PRK09782 514 AVAYQAYQVEDYATALAAWQKISLHD-----M--------SNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYW 580 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhccC-----C--------CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHH
Confidence 45677789999999999998743321 1 012344667788889999887776542 1 1122111 11
Q ss_pred H---HhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCC
Q 000134 1122 L---SNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGR 1198 (2096)
Q Consensus 1122 l---~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~ 1198 (2096)
. ..+..|++++|..+|+++++..|+ .+...++-.++.++|+++......+......|+...-+..++ -+....|+
T Consensus 581 ~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG-~aL~~~G~ 658 (987)
T PRK09782 581 WLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALG-YALWDSGD 658 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHCCC
Confidence 1 223449999999999999999996 777788888999999999988877776666665543333332 23445677
Q ss_pred hhhHHHhhcc
Q 000134 1199 WDLMDEYLSG 1208 (2096)
Q Consensus 1199 Wd~l~~~l~~ 1208 (2096)
++.-.+.+..
T Consensus 659 ~eeAi~~l~~ 668 (987)
T PRK09782 659 IAQSREMLER 668 (987)
T ss_pred HHHHHHHHHH
Confidence 7665554443
No 109
>PRK12370 invasion protein regulator; Provisional
Probab=87.83 E-value=19 Score=48.53 Aligned_cols=109 Identities=14% Similarity=-0.019 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHH--HhccCCh----hHHHHHhHhh
Q 000134 1054 QAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLAR--LHKSLSL----QDELLSNKKS 1127 (2096)
Q Consensus 1054 ~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~--~~~~~sl----~~qil~~E~~ 1127 (2096)
+.+.+|+-+++.-+.-. |. ....+..|..+|...+++|...-... +...|+- ......+...
T Consensus 318 ~~~~~A~~~~~~Al~ld-----P~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~ 385 (553)
T PRK12370 318 NAMIKAKEHAIKATELD-----HN-------NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMA 385 (553)
T ss_pred hHHHHHHHHHHHHHhcC-----CC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 34677777777665432 21 12344556667776776665555433 1222221 1123345667
Q ss_pred cCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhh
Q 000134 1128 GNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGL 1174 (2096)
Q Consensus 1128 G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl 1174 (2096)
|++++|..+|+++++..|.+.......+..+...|+++......+..
T Consensus 386 G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 386 GQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred CCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 77777777777777777765543333333344466666655555443
No 110
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=87.69 E-value=1.4e+02 Score=41.63 Aligned_cols=321 Identities=11% Similarity=0.004 Sum_probs=170.7
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhcc---CChhHH
Q 000134 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKS---LSLQDE 1120 (2096)
Q Consensus 1044 ~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~---~sl~~q 1120 (2096)
..+..+..+++.+..|...++.-.+.. ..| ....+..|...|++.++.|.+..+...... .+-+.-
T Consensus 127 ~~ll~a~~~~~~~~~a~~l~~~m~~~g---~~~--------~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~l 195 (697)
T PLN03081 127 DALVEACIALKSIRCVKAVYWHVESSG---FEP--------DQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTI 195 (697)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhC---CCc--------chHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHH
Confidence 345566667777766655555433221 111 234688999999999999999998764322 344555
Q ss_pred HHHhHhhcCHHHHHHHHHHHHccCCC-chhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCCh
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQMEPT-SVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRW 1199 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~-~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~W 1199 (2096)
+-.|-+.|++++|+..|+..++..+. +......+++++.++|..+.......-+....-......+..-+.+--+.|++
T Consensus 196 i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~ 275 (697)
T PLN03081 196 IGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDI 275 (697)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCH
Confidence 66789999999999999987765432 23334567888777777654322211111000000111122335666678888
Q ss_pred hhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHHHHhhh
Q 000134 1200 DLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLHL 1279 (2096)
Q Consensus 1200 d~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~kLH~ 1279 (2096)
+...+....+... ....|+. +..++ .+.++.++..+...+++.. .+... ..+|...-....++..
T Consensus 276 ~~A~~vf~~m~~~--------~~vt~n~-li~~y--~~~g~~~eA~~lf~~M~~~---g~~pd-~~t~~~ll~a~~~~g~ 340 (697)
T PLN03081 276 EDARCVFDGMPEK--------TTVAWNS-MLAGY--ALHGYSEEALCLYYEMRDS---GVSID-QFTFSIMIRIFSRLAL 340 (697)
T ss_pred HHHHHHHHhCCCC--------ChhHHHH-HHHHH--HhCCCHHHHHHHHHHHHHc---CCCCC-HHHHHHHHHHHHhccc
Confidence 8887777665531 1223432 33233 2445555555444444332 11111 2255555555555555
Q ss_pred hhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHHHH
Q 000134 1280 LQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLC 1359 (2096)
Q Consensus 1280 L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~AklA 1359 (2096)
+.+-+++...+.. .+...+......+.+..-. ...+..=+ .+|... ......+|-....-.
T Consensus 341 ~~~a~~i~~~m~~-----~g~~~d~~~~~~Li~~y~k-----~G~~~~A~-------~vf~~m--~~~d~~t~n~lI~~y 401 (697)
T PLN03081 341 LEHAKQAHAGLIR-----TGFPLDIVANTALVDLYSK-----WGRMEDAR-------NVFDRM--PRKNLISWNALIAGY 401 (697)
T ss_pred hHHHHHHHHHHHH-----hCCCCCeeehHHHHHHHHH-----CCCHHHHH-------HHHHhC--CCCCeeeHHHHHHHH
Confidence 5555554443321 0001111111122222111 00111000 011110 001124688888888
Q ss_pred HHcCChHHHHHHHHHHhhcCC-Ch--HHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1360 RLAGHYETATRAILEAQASGA-PN--VHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1360 RKag~~~~A~~all~a~~~~~-~~--~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
-++|+.+.|...+.+....|. |+ .+.--..-+-+.|..++|.+.++...+
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 889999999988888776652 33 233334455677888889888887654
No 111
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=87.58 E-value=66 Score=43.05 Aligned_cols=47 Identities=6% Similarity=-0.053 Sum_probs=28.9
Q ss_pred hhcCHHHHHHHHHHHHccCCCchhhhhhHHH-----HHHhccChHHHHHHhhhhhcc
Q 000134 1126 KSGNWAEVFTSCEQALQMEPTSVQRHSDVLN-----CLLNMCHLQAMVTHVDGLISR 1177 (2096)
Q Consensus 1126 ~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~-----CL~~LGq~~~ll~~~~gl~~~ 1177 (2096)
+.-+|.+|..+|+...+..++. ||.. .+.+++.|+......+-+...
T Consensus 331 s~y~~~~A~~~~~klp~h~~nt-----~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~ 382 (638)
T KOG1126|consen 331 SQYNCREALNLFEKLPSHHYNT-----GWVLSQLGRAYFELIEYDQAERIFSLVRRI 382 (638)
T ss_pred HHHHHHHHHHHHHhhHHhcCCc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4458999999999844433332 3433 345677777766665554433
No 112
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=87.33 E-value=5.9 Score=54.37 Aligned_cols=112 Identities=14% Similarity=0.117 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~ 1426 (2096)
.+.....|++....|+++.|...+..+.++.+ ..+.+..|..|-+.++.++|+...++.+...|
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-------------- 151 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-------------- 151 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC--------------
Confidence 34556677777788888888887777776653 35777788888888888888887777764211
Q ss_pred cCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhH
Q 000134 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCD 1498 (2096)
Q Consensus 1427 ~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d 1498 (2096)
+.+.++..+|.-+.+.|+ .++....|.++..-+|.-+++|..+|.-+.
T Consensus 152 ----------------------~~~~~~~~~a~~l~~~g~--~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~ 199 (694)
T PRK15179 152 ----------------------SSAREILLEAKSWDEIGQ--SEQADACFERLSRQHPEFENGYVGWAQSLT 199 (694)
T ss_pred ----------------------CCHHHHHHHHHHHHHhcc--hHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 114456666776666665 677777788777777777777777777553
No 113
>PRK14574 hmsH outer membrane protein; Provisional
Probab=87.14 E-value=1.6e+02 Score=41.79 Aligned_cols=124 Identities=12% Similarity=0.135 Sum_probs=96.8
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhccC-Ch---hHH
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSL-SL---QDE 1120 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~~-sl---~~q 1120 (2096)
.-+...++-|.|..|+-++++..+..+.+ ...+..|..+|..++..+.+.-.+.....+ +. ...
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~~P~~------------~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~ll 106 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKAGPLQ------------SGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLA 106 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCccc------------hhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHH
Confidence 44667889999999999999987653211 112347889999999999888877643222 11 112
Q ss_pred --HHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChh
Q 000134 1121 --LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ 1180 (2096)
Q Consensus 1121 --il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~ 1180 (2096)
+..+...|+|++|.+.|+++++.+|++.+...|+...+...|+.+..+..++.+....|+
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~ 168 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPT 168 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc
Confidence 336788999999999999999999999999899988889999999999999888777665
No 114
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=86.83 E-value=1.2 Score=42.26 Aligned_cols=57 Identities=14% Similarity=0.330 Sum_probs=48.5
Q ss_pred HhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccCh
Q 000134 1123 SNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIP 1179 (2096)
Q Consensus 1123 ~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p 1179 (2096)
.|.+.++|++|..++|.+++..|++.......=.|+..+|.|+......+..+...|
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 367889999999999999999999998888888899999999988777776665555
No 115
>PLN03077 Protein ECB2; Provisional
Probab=86.58 E-value=1.7e+02 Score=41.68 Aligned_cols=317 Identities=11% Similarity=-0.009 Sum_probs=168.6
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhcc---CChhHH
Q 000134 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKS---LSLQDE 1120 (2096)
Q Consensus 1044 ~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~---~sl~~q 1120 (2096)
..+..+..+.+....|.-.++.-.+.. ..| ....+..|+..|...++.|.+..+...... .+-+.-
T Consensus 292 ~~ll~a~~~~g~~~~a~~l~~~~~~~g---~~~--------d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~l 360 (857)
T PLN03077 292 TSVISACELLGDERLGREMHGYVVKTG---FAV--------DVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAM 360 (857)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhC---Ccc--------chHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHH
Confidence 345556666666666655555433321 111 235689999999999999999999764332 344556
Q ss_pred HHHhHhhcCHHHHHHHHHHHHcc--CCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCC
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQM--EPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGR 1198 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~--~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~ 1198 (2096)
|..|-+.|++++|+..|+...+. .|+..+ ...++..+.+.|+++......+-+...-.......+..-+.+-.+.|+
T Consensus 361 i~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t-~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~ 439 (857)
T PLN03077 361 ISGYEKNGLPDKALETYALMEQDNVSPDEIT-IASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC 439 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCCcee-HHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCC
Confidence 77899999999999999976543 465543 446788888889988765544433222111112223344667778899
Q ss_pred hhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHHHHhh
Q 000134 1199 WDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLH 1278 (2096)
Q Consensus 1199 Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~kLH 1278 (2096)
++...+.+..+... ...+|+. +..++ ..+++..+..+...+++. .+.+ ...+|........++-
T Consensus 440 ~~~A~~vf~~m~~~--------d~vs~~~-mi~~~--~~~g~~~eA~~lf~~m~~----~~~p-d~~t~~~lL~a~~~~g 503 (857)
T PLN03077 440 IDKALEVFHNIPEK--------DVISWTS-IIAGL--RLNNRCFEALIFFRQMLL----TLKP-NSVTLIAALSACARIG 503 (857)
T ss_pred HHHHHHHHHhCCCC--------CeeeHHH-HHHHH--HHCCCHHHHHHHHHHHHh----CCCC-CHhHHHHHHHHHhhhc
Confidence 99888877766532 1234543 22233 234444433333333322 1111 1224444444444444
Q ss_pred hhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHHH
Q 000134 1279 LLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKL 1358 (2096)
Q Consensus 1279 ~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~Akl 1358 (2096)
.+.+-.++...... .+...+......+.+.+-. ...++.- . .+|... .....+|-.....
T Consensus 504 ~l~~~~~i~~~~~~-----~g~~~~~~~~naLi~~y~k-----~G~~~~A--~-----~~f~~~---~~d~~s~n~lI~~ 563 (857)
T PLN03077 504 ALMCGKEIHAHVLR-----TGIGFDGFLPNALLDLYVR-----CGRMNYA--W-----NQFNSH---EKDVVSWNILLTG 563 (857)
T ss_pred hHHHhHHHHHHHHH-----hCCCccceechHHHHHHHH-----cCCHHHH--H-----HHHHhc---CCChhhHHHHHHH
Confidence 44444444333211 0000111111122222211 0111100 0 011111 1123467777777
Q ss_pred HHHcCChHHHHHHHHHHhhcCC-Ch--HHHHHHHHHHHcCCchHHHHHHHHHh
Q 000134 1359 CRLAGHYETATRAILEAQASGA-PN--VHMEKAKLLWSTRRSDGAIAELQQNL 1408 (2096)
Q Consensus 1359 ARKag~~~~A~~all~a~~~~~-~~--~~iE~AKLLW~~g~~~~Ai~~L~~~i 1408 (2096)
.-++|+.+.|.....+....+. |+ .+.--..-+-+.|..++|.+.++...
T Consensus 564 ~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 564 YVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 7888888888888777665542 22 12222234566777888888887765
No 116
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=86.04 E-value=3.2 Score=47.63 Aligned_cols=127 Identities=13% Similarity=0.110 Sum_probs=76.2
Q ss_pred HHHHHHHHHhhccCCcchhhhHHHHHHhhhhcCccccccCCCChhhhHhHHHHHHHHHHhhcCCCCCchhhhhhHHhhhc
Q 000134 1526 PDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSR 1605 (2096)
Q Consensus 1526 ~~ai~~Y~~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~iP~~~wl~~lPQLisR 1605 (2096)
+.++.-|++|+...+.........++.-|-..+....-.- -...+ .+..|....-+.+...|....+.++||||+.
T Consensus 43 p~aL~~~L~sv~W~~~~e~~e~~~ll~~W~~~~~~~aL~L--L~~~~--~~~~Vr~yAV~~L~~~~d~~l~~yLpQLVQa 118 (184)
T smart00145 43 PKALPKFLLSVNWSDADEVAQALSLLKKWAPLDPEDALEL--LSPKF--PDPFVRAYAVERLESASDEELLLYLLQLVQA 118 (184)
T ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCCCHHHHHHH--hCccC--CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3577778888888877655566678888854332100000 00000 1234555555678899999999999999999
Q ss_pred cccCchHHHHHHHHHHHHHHH--hchhhHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 000134 1606 ICHQNEEIVRLVKHIITSVLR--QYPQQGLWIMAAVSKSTIPSRREAAAEIIQAA 1658 (2096)
Q Consensus 1606 l~h~~~~v~~~l~~il~kv~~--~yPqq~lw~l~~~~~S~~~~R~~~~~~Il~~~ 1658 (2096)
+.+....-..+..-||.+... .+-|+.+|.+.+-+.. +.-..+...+++.+
T Consensus 119 Lr~E~~~~~~L~~fLl~ra~~s~~~~~~l~W~L~~e~~~--~~~~~r~~~~le~~ 171 (184)
T smart00145 119 LKYEPYLDSALARFLLERALKNQRLGHFFYWYLKSELED--PHYSIRFGLLLEAY 171 (184)
T ss_pred HHcccccccHHHHHHHHHHhhCHHHHHHHHHHHHHHccC--chhHHHHHHHHHHH
Confidence 988732223444444444443 3578899999877633 22334444444443
No 117
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=86.02 E-value=8.5 Score=36.15 Aligned_cols=59 Identities=15% Similarity=0.189 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCCC--hHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1351 CWLQYAKLCRLAGHYETATRAILEAQASGAP--NVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1351 ~WL~~AklARKag~~~~A~~all~a~~~~~~--~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
.|...|......|.++.|...+.++....+. .+....|..++..|+..+|+..++..+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 62 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5788888999999999999999888766443 5777889999999999999999988765
No 118
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=85.90 E-value=1.4 Score=43.38 Aligned_cols=78 Identities=14% Similarity=0.279 Sum_probs=54.4
Q ss_pred hcCHHHHHHHHHHHHccCCCc--hhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChhhHHH
Q 000134 1127 SGNWAEVFTSCEQALQMEPTS--VQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMDE 1204 (2096)
Q Consensus 1127 ~G~W~~A~~~YE~~Lq~~p~~--~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd~l~~ 1204 (2096)
.|+|++|+..||+.++..|++ ......+-.|+.++|+|+..+...+. ....+.. ....-+..+|...+|+|+.-.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~-~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN-PDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC-HHHHHHHHHHHHHhCCHHHHHH
Confidence 589999999999999999953 34455678999999999988887765 2222211 1222344789999999987655
Q ss_pred hh
Q 000134 1205 YL 1206 (2096)
Q Consensus 1205 ~l 1206 (2096)
.+
T Consensus 80 ~l 81 (84)
T PF12895_consen 80 AL 81 (84)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 119
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=85.39 E-value=3.3 Score=44.10 Aligned_cols=86 Identities=9% Similarity=0.088 Sum_probs=62.9
Q ss_pred HHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCCh
Q 000134 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRW 1199 (2096)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~W 1199 (2096)
....+...|+..+|..+|+.+++..|++......+-.|+..+|+++......+......|+....+.. ...+-+..|+|
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-la~~~~~~g~~ 101 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH-AAECLLALGEP 101 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH-HHHHHHHcCCH
Confidence 34456688999999999999999999988888888899999999988777666554444543333332 33477888888
Q ss_pred hhHHHhh
Q 000134 1200 DLMDEYL 1206 (2096)
Q Consensus 1200 d~l~~~l 1206 (2096)
+.-.+++
T Consensus 102 ~~A~~~~ 108 (135)
T TIGR02552 102 ESALKAL 108 (135)
T ss_pred HHHHHHH
Confidence 8765544
No 120
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=85.30 E-value=4.4 Score=51.43 Aligned_cols=89 Identities=15% Similarity=0.220 Sum_probs=69.6
Q ss_pred hHHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcC
Q 000134 1118 QDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLG 1197 (2096)
Q Consensus 1118 ~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg 1197 (2096)
..+....-..|+|++|..+|+++++..|++.....++-.|+..+|+++..+..++..+...|....-+. ....+...+|
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~-~lg~~~~~lg 84 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYL-RKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHH-HHHHHHHHhC
Confidence 345666778899999999999999999999999989999999999999988888776666665444333 2345667889
Q ss_pred ChhhHHHhhc
Q 000134 1198 RWDLMDEYLS 1207 (2096)
Q Consensus 1198 ~Wd~l~~~l~ 1207 (2096)
+|+.-.+++.
T Consensus 85 ~~~eA~~~~~ 94 (356)
T PLN03088 85 EYQTAKAALE 94 (356)
T ss_pred CHHHHHHHHH
Confidence 9887655544
No 121
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=84.95 E-value=4 Score=46.26 Aligned_cols=127 Identities=17% Similarity=0.222 Sum_probs=81.2
Q ss_pred HHHHHHHHHhhccCCcchhhhHHHHHHhhhhcCccccccCCCChhhhHhHHHHHHHHHHhhcCCCCCchhhhhhHHhhhc
Q 000134 1526 PDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSR 1605 (2096)
Q Consensus 1526 ~~ai~~Y~~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~iP~~~wl~~lPQLisR 1605 (2096)
+.++..+++|+...+......+..+|.-|-.......-. --...+ ....|.+..-+.++.+|......++||||+.
T Consensus 38 p~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~i~~~~aLe--LL~~~f--~d~~VR~yAV~~L~~~sd~eL~~yL~QLVQa 113 (171)
T cd00872 38 PQALPKLLLSVKWNKRDDVAQMYQLLKRWPKLKPEQALE--LLDCNF--PDEHVREFAVRCLEKLSDDELLQYLLQLVQV 113 (171)
T ss_pred cHHHHHHHhhCCCCCHHHHHHHHHHHHCCCCCCHHHHHH--HCCCcC--CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 357888899999888766667778888894432210000 000000 1134555555678899999999999999999
Q ss_pred cccCchHHHHHHHHHHHHHHHh--chhhHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 000134 1606 ICHQNEEIVRLVKHIITSVLRQ--YPQQGLWIMAAVSKSTIPSRREAAAEIIQAA 1658 (2096)
Q Consensus 1606 l~h~~~~v~~~l~~il~kv~~~--yPqq~lw~l~~~~~S~~~~R~~~~~~Il~~~ 1658 (2096)
+.+....-..+..-+|.|...+ .-|+.+|.+.+-+.. +.-+.|...|++..
T Consensus 114 LKyE~~~ds~La~FLl~Ral~n~~igh~lfW~L~~E~~~--~~~~~R~~~~le~~ 166 (171)
T cd00872 114 LKYEPYHDSDLVRFLLKRALRNQRIGHFFFWHLRSEMHN--PSVSQRFGLLLEAY 166 (171)
T ss_pred HHcccccCCHHHHHHHHHHhcCHHHHHHHHHHHHHhhcC--hHHHHHHHHHHHHH
Confidence 9986533345556666666544 578889999876543 33344555555544
No 122
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=84.53 E-value=5.2 Score=39.37 Aligned_cols=86 Identities=17% Similarity=0.307 Sum_probs=64.9
Q ss_pred HHHHhhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCc
Q 000134 151 IYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDE 230 (2096)
Q Consensus 151 ~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~ 230 (2096)
.+.+.|..+.+..|+..++..|.++ +. .+-+.+|-.++.|++..||.+++.++..+
T Consensus 3 ~L~~~l~~~~~~~vr~~a~~~L~~~---~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i------------- 58 (88)
T PF13646_consen 3 ALLQLLQNDPDPQVRAEAARALGEL---GD--------PEAIPALIELLKDEDPMVRRAAARALGRI------------- 58 (88)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHCC---TH--------HHHHHHHHHHHTSSSHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHc---CC--------HhHHHHHHHHHcCCCHHHHHHHHHHHHHh-------------
Confidence 3667777889999999999998833 22 12455777777999999999999999873
Q ss_pred ccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHH
Q 000134 231 NASSRSNELKLLDVIKLAFTAADDPLILETLLESTA 266 (2096)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~ 266 (2096)
.....+..+.+.+...++..++++++.++|
T Consensus 59 ------~~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 59 ------GDPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ------HHHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ------CCHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 123456677777888888888999988876
No 123
>PRK11189 lipoprotein NlpI; Provisional
Probab=84.43 E-value=20 Score=44.30 Aligned_cols=103 Identities=16% Similarity=-0.003 Sum_probs=81.1
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~ 1424 (2096)
..+..|...+.+-.+.|.++.|.....+|.+..+ +.+....+.++...|+.++|+..++++++-.|
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P------------ 129 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDP------------ 129 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------------
Confidence 4477899999999999999999999999988753 56888899999999999999999998875211
Q ss_pred cccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchH
Q 000134 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWE 1487 (2096)
Q Consensus 1425 ~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~we 1487 (2096)
. .+.++..+|..+...| ..++.++.|.++++.+|...
T Consensus 130 -------~-----------------~~~a~~~lg~~l~~~g--~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 130 -------T-----------------YNYAYLNRGIALYYGG--RYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred -------C-----------------CHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCH
Confidence 1 1335566666555555 47888999999999999764
No 124
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=84.39 E-value=1.5e+02 Score=39.87 Aligned_cols=75 Identities=13% Similarity=0.142 Sum_probs=42.3
Q ss_pred cccCCChhhHHHHHHHhhcc---cCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHh
Q 000134 139 LNFHSDFSFLLNIYFEFLYD---ESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIG 215 (2096)
Q Consensus 139 ~~~~~~~~~~~~~~~~~l~~---~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~ 215 (2096)
..|=-.|+.++.--++-++| ..+..||+..|+.|+.++++..+.+. ...--|--||...+...+.+.-.++-
T Consensus 47 ~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~-----kvaDvL~QlL~tdd~~E~~~v~~sL~ 121 (556)
T PF05918_consen 47 PKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVS-----KVADVLVQLLQTDDPVELDAVKNSLM 121 (556)
T ss_dssp HHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HH-----HHHHHHHHHTT---HHHHHHHHHHHH
T ss_pred HHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHh-----HHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 34445677788877777666 66677999999999999999653320 01111222457777777777766666
Q ss_pred Hhh
Q 000134 216 YFL 218 (2096)
Q Consensus 216 ~~~ 218 (2096)
.++
T Consensus 122 ~ll 124 (556)
T PF05918_consen 122 SLL 124 (556)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 125
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=83.98 E-value=4.5 Score=41.61 Aligned_cols=88 Identities=14% Similarity=0.113 Sum_probs=58.8
Q ss_pred HHHHhHhhcCHHHHHHHHHHHHccCCCc---hhhhhhHHHHHHhccChHHHHHHhhhhhccChhhh--hhHhHHHHHHHH
Q 000134 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTS---VQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYK--KTWCMQGVQAAW 1194 (2096)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~---~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~--~~~~~~~vEAAW 1194 (2096)
.+..+...|+|++|...|+.+++..|++ .+.+..+-+|+...|+++....+.+.+....|+.. .........+..
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 87 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ 87 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH
Confidence 3455677899999999999988888875 34556678888899999888887776665544421 112223344555
Q ss_pred hcCChhhHHHhhc
Q 000134 1195 RLGRWDLMDEYLS 1207 (2096)
Q Consensus 1195 rlg~Wd~l~~~l~ 1207 (2096)
.+|+++.-.+++.
T Consensus 88 ~~~~~~~A~~~~~ 100 (119)
T TIGR02795 88 ELGDKEKAKATLQ 100 (119)
T ss_pred HhCChHHHHHHHH
Confidence 6777766555443
No 126
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=83.54 E-value=5.2 Score=45.99 Aligned_cols=129 Identities=17% Similarity=0.167 Sum_probs=79.6
Q ss_pred HHHHHHHHhhccCCcchhhhHHHHHHhhhhcCccccccCCCChhhhHhHHHHHHHHHHhhcCCCCCchhhhhhHHhhhcc
Q 000134 1527 DVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRI 1606 (2096)
Q Consensus 1527 ~ai~~Y~~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~iP~~~wl~~lPQLisRl 1606 (2096)
.++..+++|+...+.........+|.-|-.......-. --...+. ...|....-+.++.+|......++||||..|
T Consensus 45 ~aL~~~L~sv~w~~~~~~~~~~~ll~~W~~~~p~~AL~--LL~~~f~--~~~VR~yAv~~L~~~~d~~l~~yLpQLVQaL 120 (184)
T PF00613_consen 45 EALPKLLRSVDWWNPEEVSEAYQLLLQWPPISPEDALE--LLSPNFP--DPFVRQYAVRRLESLSDEELLFYLPQLVQAL 120 (184)
T ss_dssp GGHHHHHTTSTTTSHHHHHHHHHHHHTSHCTTHHHHHH--CTSTT-----HHHHHHHHHHHCTS-HHHHHHHHHHHHHHG
T ss_pred hHHHHHHhhCCCCchhhHHHHHHHHHcCCCCCHHHHHH--HHHhhcc--HHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 46667788888776655556667777784432110000 0000111 1346666667789999999999999999999
Q ss_pred ccCchHHHHHHHHHHHHHHHh--chhhHHHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 000134 1607 CHQNEEIVRLVKHIITSVLRQ--YPQQGLWIMAAVSKSTIPSRREAAAEIIQAAKKG 1661 (2096)
Q Consensus 1607 ~h~~~~v~~~l~~il~kv~~~--yPqq~lw~l~~~~~S~~~~R~~~~~~Il~~~~~~ 1661 (2096)
.+.......+..-||.+...+ .-|+.+|.+.+-. ..+.-..+...+++.+...
T Consensus 121 r~e~~~~s~L~~fLl~ra~~s~~ia~~l~W~L~~e~--~~~~~~~r~~~~~~~~l~~ 175 (184)
T PF00613_consen 121 RYEPYHDSPLARFLLRRALKSPRIAHQLFWYLKAEL--HDPEYSERYQLLLEAFLDG 175 (184)
T ss_dssp GGSSSSS-HHHHHHHHHHHHSHHHHHHHHHHHHHHH--TSHHHHHHHHHHHHHHHHH
T ss_pred eeccccccHHHHHHHHHHHhCHHHHHHHHHHHHHhc--cCccHHHHHHHHHHHHHHH
Confidence 988444455666666665544 5788999998876 3333455566666665443
No 127
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=83.42 E-value=5 Score=37.24 Aligned_cols=63 Identities=29% Similarity=0.447 Sum_probs=49.7
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHh
Q 000134 1385 MEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYT 1464 (2096)
Q Consensus 1385 iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~ 1464 (2096)
+..|+.++..|+..+|+..+++.++..| ..+.+++.+|......
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P------------------------------------~~~~a~~~lg~~~~~~ 44 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDP------------------------------------DNPEAWYLLGRILYQQ 44 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCST------------------------------------THHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCC------------------------------------CCHHHHHHHHHHHHHc
Confidence 3578999999999999999999876322 2256788888877766
Q ss_pred CCCCHHHHHHHHHHHHHhccc
Q 000134 1465 GQKQKEDVITLYSRVRELQPM 1485 (2096)
Q Consensus 1465 ~~~~~~~i~~~Y~~a~~l~~~ 1485 (2096)
|+ .++.+..|+++++..|.
T Consensus 45 g~--~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 45 GR--YDEALAYYERALELDPD 63 (65)
T ss_dssp T---HHHHHHHHHHHHHHSTT
T ss_pred CC--HHHHHHHHHHHHHHCcC
Confidence 65 77788999999998885
No 128
>KOG0892 consensus Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=83.25 E-value=0.098 Score=76.32 Aligned_cols=233 Identities=6% Similarity=-0.150 Sum_probs=159.5
Q ss_pred CCCcceEEEEEecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceeeecCCcceeEecCCCc
Q 000134 1762 SLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTR 1841 (2096)
Q Consensus 1762 S~q~PkrI~i~gsDGk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~~~GLIEwv~n~~ 1841 (2096)
+...+|..+-.+++++......|..+++|+++-.++- ...| .+.|.+.+-..+|.++++..+-+|-+|+.|+.
T Consensus 2174 ~~~~~~~sse~et~~~l~k~~~~~~~~~~er~~q~~~-~~~~------~~~rq~~lDe~~l~~l~~~r~~fL~~Alt~Yl 2246 (2806)
T KOG0892|consen 2174 EDEERRSSSEFETLKDLQKLERSTVEASNEREEQMRK-NHHV------RVQRQLILDEEELLALSEDRSKFLTLALTNYL 2246 (2806)
T ss_pred hHHHHHhHHHHhhHHHHHHHHHhhhhhhHHHHHHHHH-HHHH------HHHHHHhccHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4456777778888888877778888999998877775 2333 34455678889999999999989888888765
Q ss_pred cHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCC---hHHHHHHhhc----CCCchHHHHHHHh---hCCChhHHHH
Q 000134 1842 GLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIP---EDEMLKTKIL----PMFPPVFHKWFLT---TFSEPAAWFR 1911 (2096)
Q Consensus 1842 tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~----~~~~pvl~~wf~~---~f~~p~~w~~ 1911 (2096)
..-.. .....+..+.|....+-.... -...+++++. .+|-|++++.--+ ...++-.|..
T Consensus 2247 ~cl~~-----------~~~~D~~~i~R~cslWfsns~~~evn~~mk~~i~~ipsyKFip~~yQlAaRl~~~~~~~fq~~L 2315 (2806)
T KOG0892|consen 2247 NCLSE-----------SDEYDVDLIFRCCSLWFSNSHLKEVNNSLKHEIQTVPSYKFIPLVYQLAARLGNSENNSFQKSL 2315 (2806)
T ss_pred HHHhh-----------cccccHHHHHHHhhhhccccchHHHHHHHHHHhccCCcchhHHHHHHHHHHhccccCchHHHHH
Confidence 43222 221122233333222111110 0123344443 2455655543322 3567778999
Q ss_pred HHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCCCCCCCCCCccccHHHHHhhcCCCccchH
Q 000134 1912 ARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMIDGLGITGYEGTF 1991 (2096)
Q Consensus 1912 ~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l~~pE~VPFRLT~nmv~~mG~~G~eG~F 1991 (2096)
-+..|..+.+.-.-.+|+++.+++|--+ |+.-.++=+ | ++.++.||++|+..-++++++.++.+.+
T Consensus 2316 ~~Li~r~~~dhPyhtly~L~~L~~~~rd-------~e~~n~sr~-----s--l~~~rki~a~l~~~~v~~~~~~~v~~v~ 2381 (2806)
T KOG0892|consen 2316 TSLIYRVGRDHPYHTLYQLLSLVNAVRD-------NEDENRSRG-----S--IDRDRKIAAELDLCDVNQGAGNMVRQLE 2381 (2806)
T ss_pred HHHHHHHhccCchHHHHHHHHHHhcCcC-------hhhhhhccc-----c--cchhHHHHHHHhhhHhhccchhHHHHHH
Confidence 9999999999999999999988877655 121111111 2 6779999999999999999999999999
Q ss_pred HHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccccc
Q 000134 1992 LRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKS 2027 (2096)
Q Consensus 1992 ~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~~ 2027 (2096)
+.|++-+.-+- -......++.+..-.++...|.+.
T Consensus 2382 ~lc~~yI~lAn-l~~~q~~t~~k~v~~p~~~~~~K~ 2416 (2806)
T KOG0892|consen 2382 CLCEAYISLAN-LKTSQNDTTSKLVRLPGYQWFLKQ 2416 (2806)
T ss_pred HHHHHHHHHhc-CcccccchhhhhhcCccccHHHhh
Confidence 99998887776 556677778887788888888764
No 129
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=83.07 E-value=5.8 Score=55.20 Aligned_cols=241 Identities=20% Similarity=0.206 Sum_probs=155.9
Q ss_pred cccchhhhhhhhhhchhhhhh---h---cCc-cchHHHHHHHhhhchh-hhhhhhhhccchhhhhhhcc-Cccccccccc
Q 000134 13 LRDEFDEVRAEAVISLPVIVM---W---SGL-GVLTNVFKRLESLGKD-ECEKVKRVFPISFGFLSCLS-GTCSSIVDWD 83 (2096)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~---~---~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 83 (2096)
++|....||++|+..+--++- = ++- =+-.+.|+.|-++..| ...-|+=.+|..++.|+=+- +
T Consensus 471 ~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r--------- 541 (1431)
T KOG1240|consen 471 LMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR--------- 541 (1431)
T ss_pred hcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH---------
Confidence 578889999999887643321 1 111 1235789999999999 88889999999999887432 1
Q ss_pred ccccccccccccccccccHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHH---HHHhhcccC
Q 000134 84 KNACKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNI---YFEFLYDES 160 (2096)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~ 160 (2096)
|+ .+-|.-+|.--++.-.+++ . .+-.++-+--.|+-+ .+--|+.++
T Consensus 542 ------Fl------------e~~q~~~~~g~~n~~nset---------~----~~~~~~~~~~~L~~~V~~~v~sLlsd~ 590 (1431)
T KOG1240|consen 542 ------FL------------ELTQELRQAGMLNDPNSET---------A----PEQNYNTELQALHHTVEQMVSSLLSDS 590 (1431)
T ss_pred ------HH------------HHHHHHHhcccccCccccc---------c----cccccchHHHHHHHHHHHHHHHHHcCC
Confidence 11 1222333331111111100 0 011111111122222 233455666
Q ss_pred ccchhhHHHHHHHHHHccCC----chhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccch
Q 000134 161 SEEVQLSCVRVIRRILVHGT----RDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRS 236 (2096)
Q Consensus 161 ~~~v~~~~~~~l~~il~h~~----~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (2096)
+.-|+=+.+++|.+++.+=. .|+++.- .+.|| +|+|..+|-||=-.|.. -++|-|. ++
T Consensus 591 ~~~Vkr~Lle~i~~LC~FFGk~ksND~iLsh------LiTfL-NDkDw~LR~aFfdsI~g-------vsi~VG~----rs 652 (1431)
T KOG1240|consen 591 PPIVKRALLESIIPLCVFFGKEKSNDVILSH------LITFL-NDKDWRLRGAFFDSIVG-------VSIFVGW----RS 652 (1431)
T ss_pred chHHHHHHHHHHHHHHHHhhhcccccchHHH------HHHHh-cCccHHHHHHHHhhccc-------eEEEEee----ee
Confidence 68899999999999987643 4554432 44666 99999999999777663 1233333 44
Q ss_pred hhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhh
Q 000134 237 NELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFH 312 (2096)
Q Consensus 237 ~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~ 312 (2096)
-.+=++=-+.+++++.+.- |.+..|.++.-+++-..++--...-.+-+-..+|.|||.-||-.+..-|..+++.-
T Consensus 653 ~seyllPLl~Q~ltD~EE~-Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 653 VSEYLLPLLQQGLTDGEEA-VIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred HHHHHHHHHHHhccCcchh-hHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhh
Confidence 4667777888999998887 99999999888877665555555555566778899999999999999998886554
No 130
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.80 E-value=28 Score=42.59 Aligned_cols=117 Identities=10% Similarity=0.115 Sum_probs=80.9
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHH-HhccC-----Chh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLAR-LHKSL-----SLQ 1118 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~-~~~~~-----sl~ 1118 (2096)
.+++.=++-|.|-||=..+-+...+.+ ..+.+-.|.+.|..||.|....-+.. -..++ -+.
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~-------------~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~ 294 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFP-------------HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLL 294 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCC-------------chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhh
Confidence 577777888888888777776655432 23567789999999999987665532 22222 244
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhh
Q 000134 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGL 1174 (2096)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl 1174 (2096)
.++..||..|+.++|+..|..++..+|.+++...-+-.-+---|+++..+.|-+-+
T Consensus 295 g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRi 350 (478)
T KOG1129|consen 295 GQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRI 350 (478)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHH
Confidence 68899999999999999999999999999875321111123345566555555543
No 131
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=82.44 E-value=5.8 Score=37.32 Aligned_cols=85 Identities=15% Similarity=0.187 Sum_probs=53.7
Q ss_pred HHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCCh
Q 000134 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRW 1199 (2096)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~W 1199 (2096)
....+...|++.+|..+++.+++..|++......+-.|+...|+++....+.+......|.... .......+....|++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 84 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAK-AYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchh-HHHHHHHHHHHHHhH
Confidence 3445566788888888888888888877666677777888888887776666554443333221 112223445556666
Q ss_pred hhHHHh
Q 000134 1200 DLMDEY 1205 (2096)
Q Consensus 1200 d~l~~~ 1205 (2096)
+.-.++
T Consensus 85 ~~a~~~ 90 (100)
T cd00189 85 EEALEA 90 (100)
T ss_pred HHHHHH
Confidence 554443
No 132
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=80.91 E-value=2.1e+02 Score=38.34 Aligned_cols=58 Identities=21% Similarity=0.177 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHh
Q 000134 1351 CWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNL 1408 (2096)
Q Consensus 1351 ~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i 1408 (2096)
+|.-.|+.--.-|.++.|...|-+|....+ ++.++-.||++-..|+..+|...++.+-
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar 255 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEAR 255 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 335559999999999999999999988764 5789999999999999999999998764
No 133
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=80.88 E-value=27 Score=49.85 Aligned_cols=212 Identities=17% Similarity=0.144 Sum_probs=125.1
Q ss_pred HHHHhhhcccchhhhhhhhhhchhhhhhhcCccchHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCccccccccccc
Q 000134 6 SEILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDKN 85 (2096)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (2096)
.+-|--+|+|+...||..|+..+.-+- + ....+.|..+.+|....||..-+.+||-+. ... ... .
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~----~---~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~---~~~----~~~-~ 687 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETT----P---PGFGPALVAALGDGAAAVRRAAAEGLRELV---EVL----PPA-P 687 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhc----c---hhHHHHHHHHHcCCCHHHHHHHHHHHHHHH---hcc----Cch-H
Confidence 344556789999999999999887652 2 234556666678888999998888887652 000 000 0
Q ss_pred ccccccccccccccccHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhcccCccchh
Q 000134 86 ACKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQ 165 (2096)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~ 165 (2096)
...-.++..+..--...-+.|.... .-+ . ..+.+. +...+.+|+
T Consensus 688 ~L~~~L~~~d~~VR~~A~~aL~~~~-------------------------------~~~---~-~~l~~~-L~D~d~~VR 731 (897)
T PRK13800 688 ALRDHLGSPDPVVRAAALDVLRALR-------------------------------AGD---A-ALFAAA-LGDPDHRVR 731 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhc-------------------------------cCC---H-HHHHHH-hcCCCHHHH
Confidence 0000111111000001111111110 001 1 134443 456666899
Q ss_pred hHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHHHHHH
Q 000134 166 LSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVI 245 (2096)
Q Consensus 166 ~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (2096)
.+.+..|.++- .. +.|..++.|++..||.+++.++..+= . ... .-+..+
T Consensus 732 ~~Av~aL~~~~---~~-----------~~l~~~l~D~~~~VR~~aa~aL~~~~-----------~---~~~---~~~~~L 780 (897)
T PRK13800 732 IEAVRALVSVD---DV-----------ESVAGAATDENREVRIAVAKGLATLG-----------A---GGA---PAGDAV 780 (897)
T ss_pred HHHHHHHhccc---Cc-----------HHHHHHhcCCCHHHHHHHHHHHHHhc-----------c---ccc---hhHHHH
Confidence 99999998751 11 12344679999999999999888732 1 011 012334
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHH
Q 000134 246 KLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKS 308 (2096)
Q Consensus 246 ~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l 308 (2096)
.+ +..-+|+.|..+.+.++|.++... ++ .-.|+..|..+++.||..|..-+-.+
T Consensus 781 ~~-ll~D~d~~VR~aA~~aLg~~g~~~----~~----~~~l~~aL~d~d~~VR~~Aa~aL~~l 834 (897)
T PRK13800 781 RA-LTGDPDPLVRAAALAALAELGCPP----DD----VAAATAALRASAWQVRQGAARALAGA 834 (897)
T ss_pred HH-HhcCCCHHHHHHHHHHHHhcCCcc----hh----HHHHHHHhcCCChHHHHHHHHHHHhc
Confidence 44 334467999999999999984321 11 13478888999999999998888655
No 134
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.41 E-value=2.4e+02 Score=38.66 Aligned_cols=143 Identities=13% Similarity=0.204 Sum_probs=82.4
Q ss_pred hhhHHHHHHHHhcCCCcchhhhHHHHH--HHHHhccCCCc-----chhhHHHHHHHHhhhccccCCCCchhhHHHHHHHH
Q 000134 538 VPKILVLLMHAINKESLQCEGLSVLHF--FIEQLSRVSPS-----STKHVISQVFAALIPFLERDKDNPSVLLNKVVKIL 610 (2096)
Q Consensus 538 ~pqI~a~L~~aL~~~~L~~~~l~~W~~--fv~~L~~~~~~-----~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il 610 (2096)
.+.+..+|..+|..++ +-.+=-||.. |+....+-.++ ...|...-|+..|+.--++-+-..+-.|.-+++-|
T Consensus 447 l~~~l~~l~~gL~DeP-rva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeAL 525 (859)
T KOG1241|consen 447 LQSKLSALLEGLNDEP-RVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEAL 525 (859)
T ss_pred hhHHHHHHHHHhhhCc-hHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHH
Confidence 3556666777775444 3333357776 66554322121 23477888888998877765433344677889999
Q ss_pred HHHHHHhHHHHHhhcccCCCCCChhhhHHHHHHHHHhcCCCCHHH-----------HHHHHHhhccCCChhHHHHHHHHH
Q 000134 611 EDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKD-----------QLLAAVDGLNHENLNVRYMVVCEL 679 (2096)
Q Consensus 611 ~~Li~~n~~~L~~~i~~lp~Lp~ip~l~~v~~~l~~~r~~~~l~~-----------~l~~~~~~l~~en~~Vr~~aL~eL 679 (2096)
-.||.-..+..+.....+. .-.++++++.++...-...-++ -|...++..+++-..+..+-+.-+
T Consensus 526 mElIk~st~~vy~~v~~~~----l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lf 601 (859)
T KOG1241|consen 526 MELIKNSTDDVYPMVQKLT----LVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLF 601 (859)
T ss_pred HHHHHcCcHHHHHHHHHHH----HHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHH
Confidence 9988776665554432221 1134566666662222222122 245566777776666666666666
Q ss_pred HHHHhh
Q 000134 680 SKLLKL 685 (2096)
Q Consensus 680 ~~~L~~ 685 (2096)
-+.++.
T Consensus 602 lri~~s 607 (859)
T KOG1241|consen 602 LRIFES 607 (859)
T ss_pred HHHHcC
Confidence 666665
No 135
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=80.22 E-value=2.5e+02 Score=38.65 Aligned_cols=134 Identities=20% Similarity=0.269 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~ 1426 (2096)
-+.|+.-|.+--+.|+-+.|..+|.+|....+ +......+.++-.+|+..+|.+.+-.++.-.
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld--------------- 714 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD--------------- 714 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC---------------
Confidence 46799999999999999999999999987753 4566677788888899999998877665421
Q ss_pred cCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHh
Q 000134 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARK 1506 (2096)
Q Consensus 1427 ~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~~~~ 1506 (2096)
|+..++ ..-.|++++.. |+..-.+.....+.|.+++|..-++||++|.-+.+.
T Consensus 715 ----P~hv~s----------~~Ala~~lle~-------G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~------ 767 (799)
T KOG4162|consen 715 ----PDHVPS----------MTALAELLLEL-------GSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKL------ 767 (799)
T ss_pred ----CCCcHH----------HHHHHHHHHHh-------CCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc------
Confidence 221110 11234444444 444444555567899999999999999999865432
Q ss_pred hhhhcccCCcchhhhhchHHHHHHHHHHhhccCC
Q 000134 1507 RQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGH 1540 (2096)
Q Consensus 1507 ~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~ 1540 (2096)
| -...|.+||.-|+....
T Consensus 768 --------G--------d~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 768 --------G--------DSKQAAECFQAALQLEE 785 (799)
T ss_pred --------c--------chHHHHHHHHHHHhhcc
Confidence 1 12368999998887654
No 136
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=79.98 E-value=1.9e+02 Score=38.41 Aligned_cols=78 Identities=22% Similarity=0.270 Sum_probs=61.6
Q ss_pred cccCCChhhHHHHHHHhhcccC-ccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHh
Q 000134 139 LNFHSDFSFLLNIYFEFLYDES-SEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYF 217 (2096)
Q Consensus 139 ~~~~~~~~~~~~~~~~~l~~~~-~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~ 217 (2096)
|-....+.++-+ |.+.++--. |-+-+=-+++....|.....+.++.- -+..++||..+|.|..+.||.-.+-+++..
T Consensus 308 va~algv~~llp-fl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~h-l~~l~~ci~~~l~D~~~~vRi~tA~alS~l 385 (975)
T COG5181 308 VADALGVEELLP-FLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSH-LGPLLKCISKLLKDRSRFVRIDTANALSYL 385 (975)
T ss_pred HHHhhCcHHHHH-HHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhh-hhhHHHHHHHHhhccceeeeehhHhHHHHH
Confidence 445677788888 888888844 88888888888888887777665433 256789999999999999999998888875
Q ss_pred h
Q 000134 218 L 218 (2096)
Q Consensus 218 ~ 218 (2096)
.
T Consensus 386 a 386 (975)
T COG5181 386 A 386 (975)
T ss_pred H
Confidence 4
No 137
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=79.89 E-value=14 Score=52.56 Aligned_cols=210 Identities=17% Similarity=0.073 Sum_probs=128.5
Q ss_pred hHHHHhhhcccchhhhhhhhhhchhhhhhhcCccchHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCcccccccccc
Q 000134 5 DSEILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDK 84 (2096)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (2096)
..+.|.-+|.|+...||..|+-++--++-..... . .|....++....|+......||.+.- |.
T Consensus 653 ~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~--~----~L~~~L~~~d~~VR~~A~~aL~~~~~--~~--------- 715 (897)
T PRK13800 653 FGPALVAALGDGAAAVRRAAAEGLRELVEVLPPA--P----ALRDHLGSPDPVVRAAALDVLRALRA--GD--------- 715 (897)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCch--H----HHHHHhcCCCHHHHHHHHHHHHhhcc--CC---------
Confidence 4566778999999999999999885553222111 1 22223334567999999999988641 11
Q ss_pred cccccccccccccccc---cHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhcccCc
Q 000134 85 NACKLLLNVEDDILSQ---TVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESS 161 (2096)
Q Consensus 85 ~~~~~~~~~~~~~~~~---~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (2096)
..+|+.....+.+. ..-..|... .+ ... +..+ +...+
T Consensus 716 --~~~l~~~L~D~d~~VR~~Av~aL~~~-------------------------~~-----------~~~-l~~~-l~D~~ 755 (897)
T PRK13800 716 --AALFAAALGDPDHRVRIEAVRALVSV-------------------------DD-----------VES-VAGA-ATDEN 755 (897)
T ss_pred --HHHHHHHhcCCCHHHHHHHHHHHhcc-------------------------cC-----------cHH-HHHH-hcCCC
Confidence 11222211111110 000011110 00 011 2333 45667
Q ss_pred cchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHH
Q 000134 162 EEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKL 241 (2096)
Q Consensus 162 ~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (2096)
.+|+.++...|.++-...... +.-|..++.|++..||.++...+..+- . . ...
T Consensus 756 ~~VR~~aa~aL~~~~~~~~~~---------~~~L~~ll~D~d~~VR~aA~~aLg~~g-----------~---~----~~~ 808 (897)
T PRK13800 756 REVRIAVAKGLATLGAGGAPA---------GDAVRALTGDPDPLVRAAALAALAELG-----------C---P----PDD 808 (897)
T ss_pred HHHHHHHHHHHHHhccccchh---------HHHHHHHhcCCCHHHHHHHHHHHHhcC-----------C---c----chh
Confidence 899999999998874432211 223445679999999999999888731 1 0 111
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHH
Q 000134 242 LDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKS 308 (2096)
Q Consensus 242 ~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l 308 (2096)
...+.+++.. +|++|....+.+++.+.... ++-.|+..|..++..||..|.+-+-.+
T Consensus 809 ~~~l~~aL~d-~d~~VR~~Aa~aL~~l~~~~---------a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 809 VAAATAALRA-SAWQVRQGAARALAGAAADV---------AVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred HHHHHHHhcC-CChHHHHHHHHHHHhccccc---------hHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 2235555544 67899999999999974322 456688888999999999999988664
No 138
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=79.81 E-value=1.7e+02 Score=36.51 Aligned_cols=240 Identities=15% Similarity=0.147 Sum_probs=122.7
Q ss_pred HHHhHhhcCHHHHHHHHHHHHccCCCch---hhh------------hhHHHHHHhccChHHHHHHhhhhhccChhhhhhH
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSV---QRH------------SDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTW 1185 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~---~~~------------~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~ 1185 (2096)
...+-+.|..+.|..-+...|+.+|++- +.| ...+...-..|.+.++..+...++.-.| |...+
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l 191 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASL 191 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHH
Confidence 3456789999999999999999999542 222 2344445556777777777766655444 55555
Q ss_pred hHHHHHHHHhcCChhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchh
Q 000134 1186 CMQGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMD 1265 (2096)
Q Consensus 1186 ~~~~vEAAWrlg~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~e 1265 (2096)
..++.+|--.-|.=..--.-+..+.. .++|.+.. .+.+.+.++.+- | ....+...|.++-- --
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~ask-----Ls~DnTe~-~ykis~L~Y~vg--d---~~~sL~~iRECLKl------dp 254 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASK-----LSQDNTEG-HYKISQLLYTVG--D---AENSLKEIRECLKL------DP 254 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHh-----ccccchHH-HHHHHHHHHhhh--h---HHHHHHHHHHHHcc------Cc
Confidence 55666654444332111111111111 12222222 244555554442 1 22344444544221 11
Q ss_pred hHHhhhHHHHHhhhhhHHHH-HHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCC
Q 000134 1266 SYTRAYPFIVKLHLLQELED-FHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGL 1344 (2096)
Q Consensus 1266 Sy~r~y~~l~kLH~L~ELee-~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~ 1344 (2096)
.-.+|||+--+|.-+.-.-+ ..+... ...|..=+.--..-+..-..+-.+|--++.
T Consensus 255 dHK~Cf~~YKklkKv~K~les~e~~ie-------------------~~~~t~cle~ge~vlk~ep~~~~ir~~~~r---- 311 (504)
T KOG0624|consen 255 DHKLCFPFYKKLKKVVKSLESAEQAIE-------------------EKHWTECLEAGEKVLKNEPEETMIRYNGFR---- 311 (504)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHh-------------------hhhHHHHHHHHHHHHhcCCcccceeeeeeh----
Confidence 34456665555544432111 111110 012322221111000000000111111111
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC--hHHHHHHHHHHHcCCchHHHHHHHHHhhc
Q 000134 1345 GAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAP--NVHMEKAKLLWSTRRSDGAIAELQQNLLN 1410 (2096)
Q Consensus 1345 ~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~~--~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~ 1410 (2096)
...+.-|+.|++..|..--.++.+..+. ++.+++|.-+--..+.+.||+-.+.+.+.
T Consensus 312 ---------~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 312 ---------VLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred ---------eeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 2244568889988888777777665544 57789999999999999999999988653
No 139
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=79.76 E-value=9.8 Score=49.64 Aligned_cols=115 Identities=19% Similarity=0.264 Sum_probs=79.1
Q ss_pred CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHH
Q 000134 1380 APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSR 1459 (2096)
Q Consensus 1380 ~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~Lllak 1459 (2096)
+|++..---=|+.-.|+.++|+.+++.++...|.+ +...-+||-
T Consensus 429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd------------------------------------~~lWNRLGA 472 (579)
T KOG1125|consen 429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPND------------------------------------YLLWNRLGA 472 (579)
T ss_pred ChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCch------------------------------------HHHHHHhhH
Confidence 56666666667888899999999999998643211 223444443
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccC
Q 000134 1460 WIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRG 1539 (2096)
Q Consensus 1460 Wl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g 1539 (2096)
-+ ++-.+++++++.|++|.++.|.+-+++|-||--|=.+ | +-..|+.+|+.+|..-
T Consensus 473 tL--AN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNl--------------G--------~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 473 TL--ANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNL--------------G--------AYKEAVKHLLEALSMQ 528 (579)
T ss_pred Hh--cCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhh--------------h--------hHHHHHHHHHHHHHhh
Confidence 33 4555789999999999999999999999998766322 1 2235777777777432
Q ss_pred C------------cchhhhHHHHHHhh
Q 000134 1540 H------------KNLFQALPRLLTLW 1554 (2096)
Q Consensus 1540 ~------------~~~~q~lpRlLtLW 1554 (2096)
. +.++++|.+.|+..
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~ 555 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAM 555 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHc
Confidence 1 24777776555554
No 140
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=79.61 E-value=4.1 Score=45.96 Aligned_cols=110 Identities=16% Similarity=0.109 Sum_probs=71.6
Q ss_pred HHHHHHHHhhccCCcchhhhHHHHHHhhhhcCccccccCCCChhhhHhHHHHHHHHHHhhcCCCCCchhhhhhHHhhhcc
Q 000134 1527 DVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRI 1606 (2096)
Q Consensus 1527 ~ai~~Y~~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~iP~~~wl~~lPQLisRl 1606 (2096)
.++..|++|+...+....+....+|.-|-..+....-.- -...+ .+..|.+..-+.+..++...+..++||||+.+
T Consensus 46 ~aL~~~L~sv~W~~~~e~~e~~~lL~~W~~i~~~~aLeL--L~~~f--~~~~VR~yAV~~L~~~sd~eL~~yL~QLVQaL 121 (166)
T cd00870 46 KALTKFLKSVNWSDEQEVKQALELMPKWAKIDIEDALEL--LSPYF--TNPVVRKYAVSRLKLASDEELLLYLLQLVQAL 121 (166)
T ss_pred HHHHHHhhhCCCCCHHHHHHHHHHHhcCCCCCHHHHHHH--cCccC--CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 578888999988776655556678888954332100000 00000 12345566667788999999999999999999
Q ss_pred ccCch-------HHHHHHHHHHHHHHHh--chhhHHHHHHHhh
Q 000134 1607 CHQNE-------EIVRLVKHIITSVLRQ--YPQQGLWIMAAVS 1640 (2096)
Q Consensus 1607 ~h~~~-------~v~~~l~~il~kv~~~--yPqq~lw~l~~~~ 1640 (2096)
.+... .-..+..-||.|...+ .-++.+|.+.+-+
T Consensus 122 KyE~~~~~~~~~~~s~La~fLl~Ral~s~~ig~~lfW~Lk~E~ 164 (166)
T cd00870 122 KYENLDLSPLPRLDSPLADFLIERALKNPKLANFLYWYLKVEL 164 (166)
T ss_pred HhcccccccccccccHHHHHHHHHHhcCHHHHHHHHHHhhhhc
Confidence 98764 2245555566555543 5678899986543
No 141
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=79.53 E-value=37 Score=36.00 Aligned_cols=100 Identities=12% Similarity=0.014 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccccc
Q 000134 1350 NCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSL 1427 (2096)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~ 1427 (2096)
..-...+..+.+.|+++.|...+..+...+ .+.+....|..+-..|+..+|+..+++++.-.|
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--------------- 82 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP--------------- 82 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------------
Confidence 445677888889999999998888876654 456778889999999999999999988765211
Q ss_pred CCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchH
Q 000134 1428 SLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWE 1487 (2096)
Q Consensus 1428 ~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~we 1487 (2096)
. ....+..+|.-....| +.+..++.|+++.+++|.-.
T Consensus 83 ----~-----------------~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~ 119 (135)
T TIGR02552 83 ----D-----------------DPRPYFHAAECLLALG--EPESALKALDLAIEICGENP 119 (135)
T ss_pred ----C-----------------ChHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhccccc
Confidence 0 0224455555444444 37778888889998888543
No 142
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.02 E-value=2.3e+02 Score=37.63 Aligned_cols=392 Identities=20% Similarity=0.224 Sum_probs=189.5
Q ss_pred hhhhhccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhC-CCCcchHHH
Q 000134 222 VLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLD-NPHVTVRMN 300 (2096)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~-~~n~~v~~~ 300 (2096)
.+..+|+++ ......-....+..++.-++|.|.+-.-- | ++=.||++|. +.++.++-.
T Consensus 71 ~~~~~~S~~----~~~q~~a~~~~rkllS~~~~ppi~~vi~~--G---------------~v~~lV~~l~~~~~~~lq~e 129 (514)
T KOG0166|consen 71 MLAALYSDD----PQQQLTATQAFRKLLSKERNPPIDEVIQS--G---------------VVPRLVEFLSRDDNPTLQFE 129 (514)
T ss_pred HHHHHhCCC----HHHHHHHHHHHHHHHccCCCCCHHHHHHc--C---------------cHHHHHHHHccCCChhHHHH
Confidence 344455544 33344444555555666666666543211 2 3345888887 556999999
Q ss_pred HHHHHHHHhhhhcccccccccchhhhhhhhhhHHHHHHhcCchHHHHHHHHH----HhCCCh--HHHHHhhcccccchhh
Q 000134 301 ASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEA----AFGVET--EELVKKMIPAVLPKLV 374 (2096)
Q Consensus 301 A~~~i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~rp~~~~~~~e~----llg~~~--~~fL~~~~~~~LP~LV 374 (2096)
|--.+-++|..-....--.+.+... +.++.-+.+--.-+++-|-. +.|=+. .+++... .+|+.|.
T Consensus 130 AAWaLTnIAsgtse~T~~vv~agav-------p~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~--g~l~pLl 200 (514)
T KOG0166|consen 130 AAWALTNIASGTSEQTKVVVDAGAV-------PIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSC--GALDPLL 200 (514)
T ss_pred HHHHHHHHhcCchhhccccccCCch-------HHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhh--cchHHHH
Confidence 9999999987543332222222221 11233333221112222211 333332 3333322 3444443
Q ss_pred hccccCh---h---HHHHHHHHHHHcCCCchhHH--hhhHHHHHHHHhccccHHH---HHHHHHHHhhhcCCChHHHHHH
Q 000134 375 VSQQDND---Q---AVNIINELAKCLNTDMVPLI--VTWIPKVLAFALHQADERR---LLSALEFYCIQTGSDNQEIFAA 443 (2096)
Q Consensus 375 l~~~~~~---~---~~~~i~~ia~~~~~~~~~l~--~~~~~~Ila~ll~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~ 443 (2096)
..-..+. . +.=+|..+|+ +++-.|=+ +.-...+|.-++...+.+- +.-+|.|+...+.-..+.++.+
T Consensus 201 ~~l~~~~~~~~lRn~tW~LsNlcr--gk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~ 278 (514)
T KOG0166|consen 201 RLLNKSDKLSMLRNATWTLSNLCR--GKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDA 278 (514)
T ss_pred HHhccccchHHHHHHHHHHHHHHc--CCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHc
Confidence 3221111 1 1234444433 44322222 2233445555555555543 4567778886655444545543
Q ss_pred hhHHHHHHHHHhhcCCCchhHhhhhcchhHHHHHHhhhccCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHH
Q 000134 444 ALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRI 523 (2096)
Q Consensus 444 ~~~~~l~eLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl 523 (2096)
-....|.+|| +.... .-..+|++.++.+.+|++....-+-. -|.+..|..-+..+....+|++|--.|
T Consensus 279 gvv~~LV~lL---~~~~~-------~v~~PaLRaiGNIvtG~d~QTq~vi~--~~~L~~l~~ll~~s~~~~ikkEAcW~i 346 (514)
T KOG0166|consen 279 GVVPRLVDLL---GHSSP-------KVVTPALRAIGNIVTGSDEQTQVVIN--SGALPVLSNLLSSSPKESIKKEACWTI 346 (514)
T ss_pred cchHHHHHHH---cCCCc-------ccccHHHhhccceeeccHHHHHHHHh--cChHHHHHHHhccCcchhHHHHHHHHH
Confidence 3333333553 33321 12357898889988887654332222 134444544333333344777777777
Q ss_pred HHHHHHhcc--cc-----ccchhhHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCCcchhhHHHHH-HHHhhhccccC
Q 000134 524 EILIEMIGS--HL-----TTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQV-FAALIPFLERD 595 (2096)
Q Consensus 524 ~~li~l~g~--~v-----~~~~pqI~a~L~~aL~~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i-~~~lip~~~~~ 595 (2096)
..+.. |. || ..+.|.++.+|+++ +++---=.||.+-=-+... .++.+..++++= +-.+--++ .+
T Consensus 347 SNItA--G~~~qiqaVida~l~p~Li~~l~~~----ef~~rKEAawaIsN~ts~g-~~~qi~yLv~~giI~plcdlL-~~ 418 (514)
T KOG0166|consen 347 SNITA--GNQEQIQAVIDANLIPVLINLLQTA----EFDIRKEAAWAISNLTSSG-TPEQIKYLVEQGIIKPLCDLL-TC 418 (514)
T ss_pred HHhhc--CCHHHHHHHHHcccHHHHHHHHhcc----chHHHHHHHHHHHhhcccC-CHHHHHHHHHcCCchhhhhcc-cC
Confidence 66544 33 33 25779999988887 3333333578764222221 234455555442 22222223 22
Q ss_pred CCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCChhhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHH
Q 000134 596 KDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMV 675 (2096)
Q Consensus 596 ~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~~l~~en~~Vr~~a 675 (2096)
.+ ......+.+-++.|+ +..+..+ . +.- ..+...+.+.-| ++..+.| -.|||.++...|
T Consensus 419 ~D--~~ii~v~Ld~l~nil-~~~e~~~----~----~~~---n~~~~~IEe~gg-ldkiE~L------Q~hen~~Iy~~A 477 (514)
T KOG0166|consen 419 PD--VKIILVALDGLENIL-KVGEAEK----N----RGT---NPLAIMIEEAGG-LDKIENL------QSHENEEIYKKA 477 (514)
T ss_pred CC--hHHHHHHHHHHHHHH-HHHHHhc----c----ccc---cHHHHHHHHccC-hhHHHHh------hccccHHHHHHH
Confidence 22 223455555565542 2222221 1 111 233344444444 2222222 248998888888
Q ss_pred HHHHHHHHhhc
Q 000134 676 VCELSKLLKLK 686 (2096)
Q Consensus 676 L~eL~~~L~~~ 686 (2096)
++=+..|+...
T Consensus 478 ~~II~~yf~~e 488 (514)
T KOG0166|consen 478 YKIIDTYFSEE 488 (514)
T ss_pred HHHHHHhcCCC
Confidence 88888887654
No 143
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=78.87 E-value=15 Score=46.90 Aligned_cols=111 Identities=15% Similarity=0.301 Sum_probs=71.6
Q ss_pred HHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHH-HHHHhCC
Q 000134 1388 AKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSR-WIHYTGQ 1466 (2096)
Q Consensus 1388 AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~Lllak-Wl~~~~~ 1466 (2096)
|...=-+++|++|+...+.+++=+| -.+-++-|.|. ++.-
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkLNp------------------------------------~~~~aWTLmGHEyvEm--- 377 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKLNP------------------------------------KYLSAWTLMGHEYVEM--- 377 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhcCc------------------------------------chhHHHHHhhHHHHHh---
Confidence 4444456889999999999876221 11235556654 3332
Q ss_pred CCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHH------HHHhhhhhcccCCcchhh-hh---------chHHHHHH
Q 000134 1467 KQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLV------DARKRQEENSEIGPSEKR-WW---------FYVPDVLL 1530 (2096)
Q Consensus 1467 ~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~------~~~~~~e~~~~~g~~~~~-~~---------~~l~~ai~ 1530 (2096)
+....++..|+.|++++|.=.+|||.+|+-|+-+=. =-++.. ...|.+.. |+ .-+..||.
T Consensus 378 KNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~----~~kPnDsRlw~aLG~CY~kl~~~~eAiK 453 (559)
T KOG1155|consen 378 KNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL----ELKPNDSRLWVALGECYEKLNRLEEAIK 453 (559)
T ss_pred cccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH----hcCCCchHHHHHHHHHHHHhccHHHHHH
Confidence 235788999999999999999999999998875410 001111 12222222 21 23557999
Q ss_pred HHHHhhccCCc
Q 000134 1531 FYAKGLHRGHK 1541 (2096)
Q Consensus 1531 ~Y~~sl~~g~~ 1541 (2096)
||=+++..|..
T Consensus 454 Cykrai~~~dt 464 (559)
T KOG1155|consen 454 CYKRAILLGDT 464 (559)
T ss_pred HHHHHHhcccc
Confidence 99999998865
No 144
>PRK12370 invasion protein regulator; Provisional
Probab=78.22 E-value=28 Score=46.88 Aligned_cols=123 Identities=6% Similarity=-0.114 Sum_probs=88.5
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH--hccCCh----h
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLSL----Q 1118 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~--~~~~sl----~ 1118 (2096)
.++.....-+.|..|+.++|+-++.. |. ....+..|..+|...+++|........ +..|.- .
T Consensus 343 ~lg~~~~~~g~~~~A~~~~~~Al~l~-----P~-------~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~ 410 (553)
T PRK12370 343 LLGLINTIHSEYIVGSLLFKQANLLS-----PI-------SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGI 410 (553)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC-----CC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHH
Confidence 45667778899999999999987643 21 123567889999999999977666542 223321 1
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHHccC-CCchhhhhhHHHHHHhccChHHHHHHhhhhhccCh
Q 000134 1119 DELLSNKKSGNWAEVFTSCEQALQME-PTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIP 1179 (2096)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~-p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p 1179 (2096)
.....+-..|++++|..+|++++... |++...+..+-.|+..+|+++......+.+....|
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~ 472 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI 472 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc
Confidence 22334666899999999999998775 66666666666788899999988887776554444
No 145
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=78.15 E-value=2.6e+02 Score=37.75 Aligned_cols=61 Identities=20% Similarity=0.185 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCChHHH--HHHHHHHHcCCchHHHHHHHHH
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASGAPNVHM--EKAKLLWSTRRSDGAIAELQQN 1407 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~~~~~~~i--E~AKLLW~~g~~~~Ai~~L~~~ 1407 (2096)
-+.+..+-=||++-.+|.++.|..-+-+|.++..++.+| .-||.+-..++..+|-.++...
T Consensus 403 TliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skF 465 (700)
T KOG1156|consen 403 TLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKF 465 (700)
T ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHh
Confidence 345567788999999999999999999999999888777 5899999999999999988764
No 146
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=78.07 E-value=14 Score=45.24 Aligned_cols=99 Identities=17% Similarity=0.230 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHc-CCchHHHHHHHHHhhcCCccccccccccccccc
Q 000134 1351 CWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWST-RRSDGAIAELQQNLLNKPVEVVGSTAISSITSL 1427 (2096)
Q Consensus 1351 ~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~-g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~ 1427 (2096)
.|+++.+.+|+.+-.+.|-....+|...+ ...++++.|.+-|.- ++...|.++++.+++..+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~-------------- 68 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS-------------- 68 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT--------------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC--------------
Confidence 69999999999999999999999997654 357899999999995 5555599999999874221
Q ss_pred CCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchH
Q 000134 1428 SLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWE 1487 (2096)
Q Consensus 1428 ~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~we 1487 (2096)
.....+.|..++...+ +.+.+...|.+++...+...
T Consensus 69 ----------------------~~~~~~~Y~~~l~~~~--d~~~aR~lfer~i~~l~~~~ 104 (280)
T PF05843_consen 69 ----------------------DPDFWLEYLDFLIKLN--DINNARALFERAISSLPKEK 104 (280)
T ss_dssp -----------------------HHHHHHHHHHHHHTT---HHHHHHHHHHHCCTSSCHH
T ss_pred ----------------------CHHHHHHHHHHHHHhC--cHHHHHHHHHHHHHhcCchh
Confidence 1345777888887766 47889999999988766554
No 147
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=77.20 E-value=2e+02 Score=35.90 Aligned_cols=298 Identities=13% Similarity=0.004 Sum_probs=145.7
Q ss_pred HHHHHHHhcCCChHH-HHHHHHHhc--cCChh------HHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHh
Q 000134 1090 SFLMEIYSFLDEPDG-LSGLARLHK--SLSLQ------DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLN 1160 (2096)
Q Consensus 1090 ~~L~~IYa~LdEpDg-l~Gi~~~~~--~~sl~------~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~ 1160 (2096)
-.+..+|..++.++. ..+..+... ..+.+ -+...+...|+.++|...|+++++..|++...... -.++..
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~ 88 (355)
T cd05804 10 AAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFG 88 (355)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHH
Confidence 455566666665555 444433211 11111 13445678899999999999999999987643221 112222
Q ss_pred c----cChHHHHHHhhhhhccChhhhhhHhHH--HHHHHHhcCChhhHHHhhcccCccCccccCCCCCcchhHHHHHHHH
Q 000134 1161 M----CHLQAMVTHVDGLISRIPQYKKTWCMQ--GVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQ 1234 (2096)
Q Consensus 1161 L----Gq~~~ll~~~~gl~~~~p~~~~~~~~~--~vEAAWrlg~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~ 1234 (2096)
+ |..+.+....+......|. .+... ...+....|+++.-.+.....-.. .+.+......+|.++
T Consensus 89 ~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~------~p~~~~~~~~la~i~- 158 (355)
T cd05804 89 LGDFSGMRDHVARVLPLWAPENPD---YWYLLGMLAFGLEEAGQYDRAEEAARRALEL------NPDDAWAVHAVAHVL- 158 (355)
T ss_pred hcccccCchhHHHHHhccCcCCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCcHHHHHHHHHH-
Confidence 2 3333332222221122222 11222 223556788887765555433210 011223334455444
Q ss_pred HHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHHHHh-hhhhHHHHHHHhhhccccccccCCCChHHH-HHHHH
Q 000134 1235 AMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKL-HLLQELEDFHAILVNDSFLEKSFLPSDLKF-SKLMA 1312 (2096)
Q Consensus 1235 al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~kL-H~L~ELee~~~~~~~~~~~~~~~~~~~~~~-~~l~~ 1312 (2096)
...++.++..+.++++... .......+...|-.+-.+ ....+.+++...+..... ..+....-... .....
T Consensus 159 -~~~g~~~eA~~~l~~~l~~-----~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~ 231 (355)
T cd05804 159 -EMQGRFKEGIAFMESWRDT-----WDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA-PSAESDPALDLLDAASL 231 (355)
T ss_pred -HHcCCHHHHHHHHHhhhhc-----cCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc-cccCCChHHHHhhHHHH
Confidence 2344444433333322211 010111222222222222 233455555554432100 00100111111 12244
Q ss_pred HHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC-----------CC
Q 000134 1313 NWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASG-----------AP 1381 (2096)
Q Consensus 1313 ~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~-----------~~ 1381 (2096)
.|+-++..-......|+.+.......... ......++..++.+-..|+.+.|...|..+.... ..
T Consensus 232 l~~~~~~g~~~~~~~w~~~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 307 (355)
T cd05804 232 LWRLELAGHVDVGDRWEDLADYAAWHFPD----HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDV 307 (355)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHhhcCc----ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhh
Confidence 56656555444445554444333221111 2233445788999999999999998887654321 12
Q ss_pred hHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1382 NVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1382 ~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
...+-.|-..|.+|+...|+..|..++.
T Consensus 308 ~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 308 GLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3567788899999999999999999876
No 148
>TIGR02906 spore_CotS spore coat protein, CotS family. Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.
Probab=76.86 E-value=23 Score=43.63 Aligned_cols=30 Identities=20% Similarity=0.132 Sum_probs=25.2
Q ss_pred HhhhccccCCCCCceeeecCCCcEEeeecccc
Q 000134 1926 VGHIVGLGDRHGENILFDSTTGDCVHVDFSCL 1957 (2096)
Q Consensus 1926 vgYILGLGDRH~eNILld~~tG~vvHIDF~~~ 1957 (2096)
..+.+.=||=|++||+++. |.+.-|||+.+
T Consensus 185 ~~~~liHgD~~~~Nil~~~--~~i~lIDfd~~ 214 (313)
T TIGR02906 185 KIRGFCHQDYAYHNILLKD--NEVYVIDFDYC 214 (313)
T ss_pred CcCceEcCCCCcccEEEeC--CcEEEEECccc
Confidence 3577789999999999985 78999999743
No 149
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=76.78 E-value=25 Score=40.83 Aligned_cols=39 Identities=13% Similarity=0.173 Sum_probs=20.0
Q ss_pred HhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHH-HhccC
Q 000134 1125 KKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCL-LNMCH 1163 (2096)
Q Consensus 1125 E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL-~~LGq 1163 (2096)
...|++++|..+|+++++..|++.+...++=.|+ ...|+
T Consensus 84 ~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~ 123 (198)
T PRK10370 84 LWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQ 123 (198)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC
Confidence 3455555555555555555555555555554553 34444
No 150
>PRK09687 putative lyase; Provisional
Probab=76.26 E-value=75 Score=39.13 Aligned_cols=169 Identities=14% Similarity=0.093 Sum_probs=105.3
Q ss_pred HHHHHHHhhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhc
Q 000134 148 LLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLF 227 (2096)
Q Consensus 148 ~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~ 227 (2096)
.-+++..+++.+++.+|+-+.+.+|.++-...... ... -+.-+...+.|++..||.++...+..+
T Consensus 91 a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-~~~----a~~~l~~~~~D~~~~VR~~a~~aLg~~---------- 155 (280)
T PRK09687 91 VFNILNNLALEDKSACVRASAINATGHRCKKNPLY-SPK----IVEQSQITAFDKSTNVRFAVAFALSVI---------- 155 (280)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-chH----HHHHHHHHhhCCCHHHHHHHHHHHhcc----------
Confidence 34555666788899999999999999875443311 001 122233445899999999998887541
Q ss_pred cCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHH
Q 000134 228 LDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRK 307 (2096)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~ 307 (2096)
....-+.-+..++. -+|+.|..-...++|.+ +. +.+ -+.-.|+.-|..+|.-||..|..-+-+
T Consensus 156 ---------~~~~ai~~L~~~L~-d~~~~VR~~A~~aLg~~--~~--~~~---~~~~~L~~~L~D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 156 ---------NDEAAIPLLINLLK-DPNGDVRNWAAFALNSN--KY--DNP---DIREAFVAMLQDKNEEIRIEAIIGLAL 218 (280)
T ss_pred ---------CCHHHHHHHHHHhc-CCCHHHHHHHHHHHhcC--CC--CCH---HHHHHHHHHhcCCChHHHHHHHHHHHc
Confidence 11224455666554 46778999999999997 22 222 234457777799999999999887755
Q ss_pred HhhhhcccccccccchhhhhhhhhhHHHHHHhcCchHHHHHHHHHHhCCChHHHHHhhcccccchhhh
Q 000134 308 SCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVKKMIPAVLPKLVV 375 (2096)
Q Consensus 308 l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~rp~~~~~~~e~llg~~~~~fL~~~~~~~LP~LVl 375 (2096)
+ ++ .+-.+++.+.+.... .-...++.|=.+... -++|.|.-
T Consensus 219 ~-----~~-------------~~av~~Li~~L~~~~-~~~~a~~ALg~ig~~--------~a~p~L~~ 259 (280)
T PRK09687 219 R-----KD-------------KRVLSVLIKELKKGT-VGDLIIEAAGELGDK--------TLLPVLDT 259 (280)
T ss_pred c-----CC-------------hhHHHHHHHHHcCCc-hHHHHHHHHHhcCCH--------hHHHHHHH
Confidence 4 11 122466666665544 444556644334443 35566655
No 151
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=75.86 E-value=1.3e+02 Score=37.36 Aligned_cols=154 Identities=18% Similarity=0.138 Sum_probs=110.3
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhcc-----CChh-
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKS-----LSLQ- 1118 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~-----~sl~- 1118 (2096)
.|++-=+..|-|.||=..+.+-+.+ +.+-.+.++.|..||.+=.|..-..-+.....+ .+++
T Consensus 112 qL~~Dym~aGl~DRAE~~f~~L~de------------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI 179 (389)
T COG2956 112 QLGRDYMAAGLLDRAEDIFNQLVDE------------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI 179 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhcc------------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH
Confidence 4667778889999998887776553 234457789999999987777655555442111 1111
Q ss_pred -----HHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHH
Q 000134 1119 -----DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAA 1193 (2096)
Q Consensus 1119 -----~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAA 1193 (2096)
+-+..+....+.+.|..+.+++++.+|+.+..-+-+=+-....|+|+..+...+.+...+|++-.++.+.-.+|=
T Consensus 180 AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y 259 (389)
T COG2956 180 AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECY 259 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 123445677788899999999999999987654433344567799999988888888889998888887777776
Q ss_pred HhcCChhhHHHhhcccC
Q 000134 1194 WRLGRWDLMDEYLSGAD 1210 (2096)
Q Consensus 1194 Wrlg~Wd~l~~~l~~~~ 1210 (2096)
=.+|+=+.-..|+...-
T Consensus 260 ~~lg~~~~~~~fL~~~~ 276 (389)
T COG2956 260 AQLGKPAEGLNFLRRAM 276 (389)
T ss_pred HHhCCHHHHHHHHHHHH
Confidence 67888777777776543
No 152
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=75.76 E-value=12 Score=42.51 Aligned_cols=112 Identities=17% Similarity=0.225 Sum_probs=69.2
Q ss_pred HHHHHHHHhhc-cCCcchhhhHHHHHHhhhhcCccccccCCCChhhhHhHHHHHHHHHHhhcCCCCCchhhhhhHHhhhc
Q 000134 1527 DVLLFYAKGLH-RGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSR 1605 (2096)
Q Consensus 1527 ~ai~~Y~~sl~-~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~iP~~~wl~~lPQLisR 1605 (2096)
.++..+++|+. .+.+...+ +..+|.-|-..+....-.- -...+ ....|.+.--+.++.+|....+..+||||+.
T Consensus 39 ~aLp~~L~s~~~w~~~~~~e-~~~LL~~W~p~~p~~ALeL--L~~~f--~d~~VR~yAV~~L~~~~ddeL~~yLpQLVQa 113 (169)
T cd00869 39 NALPLVLASAPSWDWANLMD-VYQLLHQWAPLRPLIALEL--LLPKF--PDQEVRAHAVQWLARLSNDELLDYLPQLVQA 113 (169)
T ss_pred HHHHHHHHhcccCcHHHHHH-HHHHHhCCCCCCHHHHHHH--cCCcC--CChHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 57777777763 44443333 5678888854332100000 00000 1123555556678899999999999999999
Q ss_pred cccCchHHHHHHHHHHHHHHHh--chhhHHHHHHHhhcCC
Q 000134 1606 ICHQNEEIVRLVKHIITSVLRQ--YPQQGLWIMAAVSKST 1643 (2096)
Q Consensus 1606 l~h~~~~v~~~l~~il~kv~~~--yPqq~lw~l~~~~~S~ 1643 (2096)
+.+....-..+..-||.+...+ .-|+.+|.+.+-....
T Consensus 114 LkyE~~~~s~L~~FLl~RAl~n~~i~h~lfW~Lk~e~~~~ 153 (169)
T cd00869 114 LKFELYLKSALVRFLLSRSLVSLRFAHELYWLLKDALDDC 153 (169)
T ss_pred HHccccCcChHHHHHHHHHhcCHHHHHHHHHHhHHHccCc
Confidence 9987643345556666665543 6789999998776543
No 153
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=75.27 E-value=19 Score=40.31 Aligned_cols=58 Identities=16% Similarity=0.133 Sum_probs=48.7
Q ss_pred CChHHHHHHHHHhccCChhHHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHH
Q 000134 1100 DEPDGLSGLARLHKSLSLQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVT 1169 (2096)
Q Consensus 1100 dEpDgl~Gi~~~~~~~sl~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~ 1169 (2096)
.++|++.|+... ++..|+|++|..+|+++++..|++...+...=.|++.+|+.+....
T Consensus 67 ~~~~y~~gLG~~------------~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~ 124 (157)
T PRK15363 67 WSFDYWFRLGEC------------CQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIK 124 (157)
T ss_pred ccHHHHHHHHHH------------HHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHH
Confidence 467788887553 4578999999999999999999999988888899999999775433
No 154
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=74.68 E-value=39 Score=39.72 Aligned_cols=127 Identities=13% Similarity=0.086 Sum_probs=73.1
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcC--------CChHHHHHHHH-H-hc
Q 000134 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFL--------DEPDGLSGLAR-L-HK 1113 (2096)
Q Consensus 1044 ~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~L--------dEpDgl~Gi~~-~-~~ 1113 (2096)
..++..-.+-+.|..|+-+++..++..+++ +. ....+-.+..+|.+. ++++...-... . ..
T Consensus 74 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~--~~-------~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 74 LDLAYAYYKSGDYAEAIAAADRFIRLHPNH--PD-------ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR 144 (235)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHCcCC--Cc-------hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence 456788888999999999999988765422 11 011222333344332 12211111111 0 00
Q ss_pred cCCh--h-------------------HHHHHhHhhcCHHHHHHHHHHHHccCCCc---hhhhhhHHHHHHhccChHHHHH
Q 000134 1114 SLSL--Q-------------------DELLSNKKSGNWAEVFTSCEQALQMEPTS---VQRHSDVLNCLLNMCHLQAMVT 1169 (2096)
Q Consensus 1114 ~~sl--~-------------------~qil~~E~~G~W~~A~~~YE~~Lq~~p~~---~~~~~glL~CL~~LGq~~~ll~ 1169 (2096)
.++- . .....|...|++.+|...|+.+++..|++ .+....+-+++..+|+++....
T Consensus 145 ~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~ 224 (235)
T TIGR03302 145 YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQD 224 (235)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 1100 0 12234567788888888888888876653 3556677777888888888777
Q ss_pred HhhhhhccCh
Q 000134 1170 HVDGLISRIP 1179 (2096)
Q Consensus 1170 ~~~gl~~~~p 1179 (2096)
+.+.+..+.|
T Consensus 225 ~~~~l~~~~~ 234 (235)
T TIGR03302 225 AAAVLGANYP 234 (235)
T ss_pred HHHHHHhhCC
Confidence 7776655544
No 155
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=74.48 E-value=7.9 Score=46.99 Aligned_cols=76 Identities=18% Similarity=0.279 Sum_probs=62.5
Q ss_pred CChhHHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHH
Q 000134 1115 LSLQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGV 1190 (2096)
Q Consensus 1115 ~sl~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~v 1190 (2096)
.++..+--.+-+++++++|+.+|..|++..|+|...+...--.+..||+++..+.-++.-+.-.|.+.+.|..+++
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~ 157 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGL 157 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 3456677778899999999999999999999999888777777889999998888777766667777777766654
No 156
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=74.20 E-value=3.2e+02 Score=36.76 Aligned_cols=348 Identities=16% Similarity=0.163 Sum_probs=184.2
Q ss_pred ccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchh
Q 000134 158 DESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSN 237 (2096)
Q Consensus 158 ~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (2096)
+-+|+.||-++--+|+....-..... -....+-+..++...+-+-|.-+..-+..|+.+.. -..-.
T Consensus 106 ~tps~~~q~~~~~~l~~~~~~~~~~~----~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~----------i~~~~ 171 (569)
T KOG1242|consen 106 DTPSKSVQRAVSTCLPPLVVLSKGLS----GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG----------IESLK 171 (569)
T ss_pred CCCcHHHHHHHHHHhhhHHHHhhccC----HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH----------Hhhhh
Confidence 35677788776666665554433221 12233333444566777777777777888773332 33445
Q ss_pred hHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchh-HHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccc
Q 000134 238 ELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQH-FLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGG 316 (2096)
Q Consensus 238 ~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~-~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~ 316 (2096)
++.||+.+-.+.-..+...-.|-.+....-.++..-..-|- +.-.|-.++...|.....||-.|..-+..+-..-.-.+
T Consensus 172 ~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~a 251 (569)
T KOG1242|consen 172 EFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYA 251 (569)
T ss_pred hhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcch
Confidence 58899999988887777666662222222222222122221 22345567888888889999998888777744443333
Q ss_pred cccccchhhhhhhhhhHHHHHHhcCchHHHHHHHHHHhCCChHHHHHhhcccccchhhhc-cccChhH----HHHHHHHH
Q 000134 317 CELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVKKMIPAVLPKLVVS-QQDNDQA----VNIINELA 391 (2096)
Q Consensus 317 ~~l~~~~~~~~~~~l~~~~~~~l~~rp~~~~~~~e~llg~~~~~fL~~~~~~~LP~LVl~-~~~~~~~----~~~i~~ia 391 (2096)
.+++.+.- |-.+.-..+++.-..++.+ +.++-.-..-|....|-++|.|.-. ....+++ .+.+..++
T Consensus 252 VK~llpsl------l~~l~~~kWrtK~aslell--g~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~ 323 (569)
T KOG1242|consen 252 VKLLLPSL------LGSLLEAKWRTKMASLELL--GAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFG 323 (569)
T ss_pred hhHhhhhh------HHHHHHHhhhhHHHHHHHH--HHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 33333332 1112222455555555444 2555566788899999999998642 1222121 23444444
Q ss_pred HHcCCCchhHHhhhHHHHHHHHh-ccccHH-HHHHHHHHHhhhcCCChHHHHHHhhHHHHHHHHHh-hcCCCchhHhhhh
Q 000134 392 KCLNTDMVPLIVTWIPKVLAFAL-HQADER-RLLSALEFYCIQTGSDNQEIFAAALPALLDELICF-VDGGDSDEINERL 468 (2096)
Q Consensus 392 ~~~~~~~~~l~~~~~~~Ila~ll-~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~eLl~~-~~~~~~~~~~~~~ 468 (2096)
+-..-+ -.-.++-.|+ .-.++. .+.+|++-+..-+-..- +.+.--+++..+|.+ +.+-+. +.+ |.
T Consensus 324 svidN~-------dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~---V~~psLalmvpiL~R~l~eRst-~~k-r~ 391 (569)
T KOG1242|consen 324 SVIDNP-------DIQKIIPTLLDALADPSCYTPECLDSLGATTFVAE---VDAPSLALMVPILKRGLAERST-SIK-RK 391 (569)
T ss_pred HhhccH-------HHHHHHHHHHHHhcCcccchHHHHHhhcceeeeee---ecchhHHHHHHHHHHHHhhccc-hhh-hh
Confidence 322211 1111222222 222333 56666654432211000 001111334455432 222221 122 22
Q ss_pred cchhHHHHHHhhhccCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhcc-ccccchhhHHHHHH
Q 000134 469 NRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGS-HLTTYVPKILVLLM 546 (2096)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~-~v~~~~pqI~a~L~ 546 (2096)
....+..++.....+..++.||..=+=|+=..+. .+ ..+.|--+-+++|.++|-+|. .-....|-++.+++
T Consensus 392 --t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~----d~-~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~ 463 (569)
T KOG1242|consen 392 --TAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLD----DA-VPEVRAVAARALGALLERLGEVSFDDLIPELSETLT 463 (569)
T ss_pred --HHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhc----CC-ChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhc
Confidence 1334555666667888899998886666655444 33 344566789999999999998 44445566555544
No 157
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=74.14 E-value=37 Score=39.92 Aligned_cols=112 Identities=14% Similarity=0.073 Sum_probs=79.9
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC-----hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccc
Q 000134 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAP-----NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTA 1420 (2096)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~~-----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~ 1420 (2096)
....+.++..+....+.|.++.|...+.++....+. .+.+..|..+-..|+..+|+..+++.+...|.
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~------- 102 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN------- 102 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-------
Confidence 455778999999999999999999999988765432 35677889999999999999999998864321
Q ss_pred cccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhccchHHHH
Q 000134 1421 ISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYT------GQKQKEDVITLYSRVRELQPMWEKGY 1490 (2096)
Q Consensus 1421 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~------~~~~~~~i~~~Y~~a~~l~~~weK~~ 1490 (2096)
++ ....++..+|.-.... ...+.++.++.|+++++.+|....++
T Consensus 103 ------------~~--------------~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 152 (235)
T TIGR03302 103 ------------HP--------------DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAP 152 (235)
T ss_pred ------------CC--------------chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHH
Confidence 11 1122344444433222 11236778899999999999876554
No 158
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=73.57 E-value=72 Score=37.52 Aligned_cols=144 Identities=17% Similarity=0.075 Sum_probs=81.4
Q ss_pred HHHHHhhcccCccchhhH--HHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhc
Q 000134 150 NIYFEFLYDESSEEVQLS--CVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLF 227 (2096)
Q Consensus 150 ~~~~~~l~~~~~~~v~~~--~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~ 227 (2096)
..+.+.+-+.+|.=++-| ++..|.+.++++.... ...++.+|-..+.++.+.+|.++..++..++++-.
T Consensus 56 ~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~----~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~----- 126 (228)
T PF12348_consen 56 DAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY----ADILLPPLLKKLGDSKKFIREAANNALDAIIESCS----- 126 (228)
T ss_dssp HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH----HHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH----HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-----
Confidence 445555555555434333 5666666666653221 23344555555589999999999999999872111
Q ss_pred cCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhccc-chh-----HHHHHHHHHHhhCCCCcchHHHH
Q 000134 228 LDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVH-SQH-----FLFLLILLVEQLDNPHVTVRMNA 301 (2096)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~-~e~-----~~~~l~~Li~~L~~~n~~v~~~A 301 (2096)
....++..+-......++|++.+.++..+..+....... ..+ +....=.+...|..+++-||..|
T Consensus 127 ---------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~A 197 (228)
T PF12348_consen 127 ---------YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAA 197 (228)
T ss_dssp ---------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHH
T ss_pred ---------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHH
Confidence 112232233333566788999999999999986655311 111 22233348888999999999999
Q ss_pred HHHHHHHhhh
Q 000134 302 SRLIRKSCFF 311 (2096)
Q Consensus 302 ~~~i~~l~~~ 311 (2096)
.+-+..+.++
T Consensus 198 r~~~~~l~~~ 207 (228)
T PF12348_consen 198 RECLWALYSH 207 (228)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888443
No 159
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=73.57 E-value=2.8e+02 Score=36.11 Aligned_cols=128 Identities=20% Similarity=0.224 Sum_probs=79.8
Q ss_pred hhHHHHHHHHHHccCCchhhhhhhhHHH-HHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHHHH
Q 000134 165 QLSCVRVIRRILVHGTRDVLLKTRSEWI-KCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLD 243 (2096)
Q Consensus 165 ~~~~~~~l~~il~h~~~~~~~~~~~~w~-~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (2096)
+-..+-.+..++.-..+++......+++ ++++......+...|.++++.+..++.. |.++ ..-..+++
T Consensus 164 ~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK------~~~~-----~~l~~~l~ 232 (415)
T PF12460_consen 164 QSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNK------WPDD-----DDLDEFLD 232 (415)
T ss_pred cccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcC------CCCh-----hhHHHHHH
Confidence 3446666677777777775543334455 5777777888899999999999987622 1222 14466777
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHH-HHHHHHHhhCCCCcchHHHHHHHH
Q 000134 244 VIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLF-LLILLVEQLDNPHVTVRMNASRLI 305 (2096)
Q Consensus 244 ~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~-~l~~Li~~L~~~n~~v~~~A~~~i 305 (2096)
.....+....++....-.++.++-|+||-..++.-... .+-.|++-|+++ -+...|-+-+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~~--~~g~~aA~~f 293 (415)
T PF12460_consen 233 SLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSSP--ELGQQAAKAF 293 (415)
T ss_pred HHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCCh--hhHHHHHHHH
Confidence 77766644555556666777777776665555544433 344588888884 3344444333
No 160
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=73.20 E-value=4.1 Score=35.17 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=27.8
Q ss_pred HHHhHhhcCHHHHHHHHHHHHccCCCchhhhh
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHS 1152 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~ 1152 (2096)
...|+..|++++|..+|+++++..|++.+...
T Consensus 8 a~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~ 39 (44)
T PF13428_consen 8 ARAYRRLGQPDEAERLLRRALALDPDDPEAWR 39 (44)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 34688999999999999999999999987543
No 161
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=72.97 E-value=9.1 Score=33.05 Aligned_cols=41 Identities=22% Similarity=0.248 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHh
Q 000134 1453 TLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAK 1495 (2096)
Q Consensus 1453 a~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~ 1495 (2096)
+++.+|++..+.|+ .++.++.|+++++.+|+...+|+.||+
T Consensus 3 ~~~~la~~~~~~G~--~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQ--PDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCC--HHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 57788998888886 899999999999999999999999885
No 162
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=72.51 E-value=36 Score=37.24 Aligned_cols=58 Identities=33% Similarity=0.378 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC-CC----hHHHHHHHHHHHcCCchHHHHHHHH
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASG-AP----NVHMEKAKLLWSTRRSDGAIAELQQ 1406 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~-~~----~~~iE~AKLLW~~g~~~~Ai~~L~~ 1406 (2096)
...+|..|+.+-..|.++.|...+..+.... ++ -+.+--|+++..+|+.++|+..|+.
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 4568899999999999999999999887764 22 2667789999999999999999965
No 163
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=72.17 E-value=50 Score=36.96 Aligned_cols=64 Identities=14% Similarity=0.064 Sum_probs=54.4
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC-----ChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA-----PNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~-----~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
...+.+|+..+..++..|.++.|...+.+|..... +.+....|.++-..|+..+|+..+++++.
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34578899999999999999999999999976532 23567778999999999999999999875
No 164
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.01 E-value=4.4e+02 Score=37.41 Aligned_cols=61 Identities=16% Similarity=0.218 Sum_probs=42.7
Q ss_pred CCCChHHHHHHHHHHHHHHHHhcc---ccccchhhHHHHHHHHhcCCCcchhhhHHHHHHHHHhc
Q 000134 509 HAEDLSLQKQALKRIEILIEMIGS---HLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLS 570 (2096)
Q Consensus 509 ~~~~~~~k~~~l~sl~~li~l~g~---~v~~~~pqI~a~L~~aL~~~~L~~~~l~~W~~fv~~L~ 570 (2096)
++++.+.|..|--||-.+|.-... +++.++|.||--|.+-.+.-+....+ .+-..||....
T Consensus 513 ~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt-~vme~iV~~fs 576 (1010)
T KOG1991|consen 513 NDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLT-NVMEKIVCKFS 576 (1010)
T ss_pred cCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHH-HHHHHHHHHHH
Confidence 456677888888899999987764 59999999998887766433322222 45666777664
No 165
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=71.91 E-value=9.7 Score=42.46 Aligned_cols=110 Identities=16% Similarity=0.149 Sum_probs=67.4
Q ss_pred HHHHHHHHhhccCCcchhhhHHHHHHhhhhcCccccccCCCChhhhHhHHHHHHHHHHhhcCCCCCchhhhhhHHhhhcc
Q 000134 1527 DVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRI 1606 (2096)
Q Consensus 1527 ~ai~~Y~~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~iP~~~wl~~lPQLisRl 1606 (2096)
.++.-+++++...+......+-.+|.-|-..+....-.- -...+ ....|.+..-+.+...|......++||||+.+
T Consensus 39 ~~lp~~L~sv~w~~~~~~~e~~~lL~~W~~~~~~~aL~L--L~~~~--~~~~vr~yAv~~L~~~~~~~l~~ylpQLVQaL 114 (152)
T cd00864 39 KALPKLLKSVNWNDDEEVSELYQLLKWWAPLSPEDALEL--LSPKY--PDPVVRQYAVRVLESASDDELLLYLPQLVQAL 114 (152)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHhcCCCCCHHHHHHH--cCCcC--CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 466667778877666666667788888843321100000 00000 11345555556788899999999999999999
Q ss_pred ccCchHHHHHHHHHHHHHHH--hchhhHHHHHHHhh
Q 000134 1607 CHQNEEIVRLVKHIITSVLR--QYPQQGLWIMAAVS 1640 (2096)
Q Consensus 1607 ~h~~~~v~~~l~~il~kv~~--~yPqq~lw~l~~~~ 1640 (2096)
.+....-..+..-||.+..+ .+-++.+|.+.+-+
T Consensus 115 kye~~~~~~L~~fLl~ra~~s~~~~~~l~W~L~~e~ 150 (152)
T cd00864 115 KYEPYLDSYLARFLLERALKSQRLGHQLYWNLKSEI 150 (152)
T ss_pred hccccCCCHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 88763223444444444443 35788899997643
No 166
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=71.91 E-value=12 Score=35.42 Aligned_cols=55 Identities=20% Similarity=0.331 Sum_probs=48.8
Q ss_pred HHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhc
Q 000134 1356 AKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLN 1410 (2096)
Q Consensus 1356 AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~ 1410 (2096)
+.++.+.+.++.|..++.++.... ++......|.++...|+..+|+..+++.++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 457889999999999999988875 4678899999999999999999999999864
No 167
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=71.28 E-value=4.5e+02 Score=37.18 Aligned_cols=199 Identities=20% Similarity=0.287 Sum_probs=115.9
Q ss_pred HHHHHHHHHhhhcCCChHHHHHHhhHHHHHHHHHhhcCCCchhHhhhhcchhHHHHHHhhhcc---C--CCChhhhhHHH
Q 000134 421 RLLSALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLT---G--NEDLPGFLRNH 495 (2096)
Q Consensus 421 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~eLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~fl~~~ 495 (2096)
--+.+|.|+.+...+...+.|...++.+..=++.-.|+..-.-+.. .-...+..-+.+. . .-+...|..+-
T Consensus 494 ~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaE----AL~v~~~lvkvirpl~~~~~~d~~~~v~~m 569 (1233)
T KOG1824|consen 494 LKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAE----ALLVCQQLVKVIRPLQPPSSFDASPYVKTM 569 (1233)
T ss_pred HHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHH----HHHHHHHHHHHhcccCCCccCCCChhHHHH
Confidence 3466777777766666666666555544433333444444221110 0111122222222 1 13445666666
Q ss_pred HHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHhcCCCcchhhhHHHHHHHHH-hccCCC
Q 000134 496 FVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQ-LSRVSP 574 (2096)
Q Consensus 496 ~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL~~~~L~~~~l~~W~~fv~~-L~~~~~ 574 (2096)
+--++..+..+ ..|-+.|.|+|-+||.+|-.+|......+|-+.-.|.--|.++.-|..|+++....... |.
T Consensus 570 ~~~tl~rL~a~---d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nEiTRl~AvkAlt~Ia~S~l~---- 642 (1233)
T KOG1824|consen 570 YDCTLQRLKAT---DSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNEITRLTAVKALTLIAMSPLD---- 642 (1233)
T ss_pred HHHHHHHHhcc---cccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhchhHHHHHHHHHHHHHhccce----
Confidence 55555555432 13567899999999999999999999999998888888888888899998887764443 32
Q ss_pred cchhhHHHHHHHHhhhccccCCCCchhhHHHHHHHHHHHHHHh-----HHHHHhhcccCCCCCC
Q 000134 575 SSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKN-----RAILKQHIHEFPLLPS 633 (2096)
Q Consensus 575 ~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n-----~~~L~~~i~~lp~Lp~ 633 (2096)
-++.|.+..++..+..|+-+.. .+.+......++.|+... .+++.-.+.++|+|=+
T Consensus 643 i~l~~~l~~il~~l~~flrK~~---r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lis 703 (1233)
T KOG1824|consen 643 IDLSPVLTEILPELASFLRKNQ---RALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLIS 703 (1233)
T ss_pred eehhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhh
Confidence 2456777777777777764321 122333444444444432 2334444555555433
No 168
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=70.75 E-value=2.1e+02 Score=36.02 Aligned_cols=222 Identities=18% Similarity=0.252 Sum_probs=121.1
Q ss_pred cchhhHHH-HHHHHh-cCCCcchh-hhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhccc-cCCCCchhhHHHHHHHHH
Q 000134 536 TYVPKILV-LLMHAI-NKESLQCE-GLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLE-RDKDNPSVLLNKVVKILE 611 (2096)
Q Consensus 536 ~~~pqI~a-~L~~aL-~~~~L~~~-~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~-~~~~~~~~~~~~~~~il~ 611 (2096)
.+.|.++. .|...- ..|+.|++ .+++-..+|..+.+.-...+..+++.+|-..++.+. .+.+.| .++..-.++++
T Consensus 67 ~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yP-e~r~~ff~LL~ 145 (319)
T PF08767_consen 67 NFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYP-EHRVNFFKLLR 145 (319)
T ss_dssp HTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhCh-HHHHHHHHHHH
Confidence 56677665 344333 34555554 568888899998765456777888888888888885 343444 46777778888
Q ss_pred HHHHHhHHHHHhhcccCCCCCChhhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHH---
Q 000134 612 DLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSE--- 688 (2096)
Q Consensus 612 ~Li~~n~~~L~~~i~~lp~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~~l~~en~~Vr~~aL~eL~~~L~~~~~--- 688 (2096)
.++..+-..+- .||. + ..+.-+....-+++|.+.+|...||+-|..++..-..
T Consensus 146 ~i~~~~f~~l~-------~lp~-~----------------~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~ 201 (319)
T PF08767_consen 146 AINEHCFPALL-------QLPP-E----------------QFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNP 201 (319)
T ss_dssp HHHHHHTHHHH-------HS-H-H----------------HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SH
T ss_pred HHHHHhHHHHH-------cCCH-H----------------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCH
Confidence 77666533221 1221 0 1123344566788899999999999999999886443
Q ss_pred H-HHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhcccCccCcccccccccccccccccChhhHHH
Q 000134 689 D-VTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALGAVDPAKVKGFSCQRFKIECSDDDLIFE 767 (2096)
Q Consensus 689 ~-l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IGalDp~r~~~~~~~~~~~~~~~~~f~~~ 767 (2096)
+ .+.-... -. .+++..+...|.|...++.-. .+...+ .. ++.-++.+.+..+... -...+.+|+..
T Consensus 202 ~~~~~F~~~-y~--~~il~~if~vltD~~Hk~gf~---~q~~iL-~~---Lf~~ve~~~i~~~l~~---~~~~n~~~v~~ 268 (319)
T PF08767_consen 202 EFANQFYQQ-YY--LDILQDIFSVLTDSDHKSGFK---LQSQIL-SN---LFRLVESGSIQVPLFD---PGMSNQEFVSE 268 (319)
T ss_dssp HHHHHHHHH-HH--HHHHHHHHHHHHSTT-GGGHH---HHHHHH-HH---HHHHHHTT-SSSSSSS---TTT-HHHHHHH
T ss_pred HHHHHHHHH-HH--HHHHHHHHHHHHCcccHHHHH---HHHHHH-HH---HHHHHHcccccccccC---CCCccHHHHHH
Confidence 1 1111110 00 146677777777776553211 111111 11 1222222222222111 12345668877
Q ss_pred HHHHHHHHHHHcCCChhhHhHHHHHHHHHHHH
Q 000134 768 LIDKHLARAFRAAPDTIIQDSAALAIQELLKI 799 (2096)
Q Consensus 768 ll~~~Lv~af~s~~dt~~Q~~~A~AiQElLk~ 799 (2096)
.+.+.|..+|---+......| ++.+.+.
T Consensus 269 ~i~~~L~~~Fp~l~~~qi~~f----v~~Lf~~ 296 (319)
T PF08767_consen 269 YIANLLSEAFPNLSPKQIENF----VQGLFEL 296 (319)
T ss_dssp HHHHHHHHH-TTS-HHHHHHH----HHHHHHT
T ss_pred HHHHHHHHhCCCCCHHHHHHH----HHHHHHh
Confidence 888888888844444433333 3555554
No 169
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=70.41 E-value=5.6 Score=31.70 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=23.4
Q ss_pred HHHHhHhhcCHHHHHHHHHHHHccCCCc
Q 000134 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTS 1147 (2096)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~ 1147 (2096)
....|.+.|+|++|..+|+++++..|++
T Consensus 7 lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 7 LGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3456889999999999999999999874
No 170
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=70.06 E-value=69 Score=43.88 Aligned_cols=152 Identities=11% Similarity=0.090 Sum_probs=76.5
Q ss_pred hhHHHHHHHHHHHHHhhhcccchhH-HHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccchhhhhhhhh--
Q 000134 255 PLILETLLESTAELMMAVDVHSQHF-LFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNEL-- 331 (2096)
Q Consensus 255 ~~i~eTll~~~~~i~~~~~~~~e~~-~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~~~l-- 331 (2096)
-.+.|-.|.++.-|-+.. +--++ --.|---+-||+==+.-+-=+|.-...++|+.-..--+..+.--.- +..+|
T Consensus 269 iDvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealP-lL~~lLs 345 (1051)
T KOG0168|consen 269 IDVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALP-LLTPLLS 345 (1051)
T ss_pred hHHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHH-HHHHHHh
Confidence 346777777777763222 11111 1111112333333334445566666667777665544433322111 11222
Q ss_pred -------------hHHHHHHhcCchHHHHHHHHH-HhCCChHHHHHhhcccccchhhhccccChhHHHHHHHHHHHcCCC
Q 000134 332 -------------FDYLSVRLASRPIMVREFAEA-AFGVETEELVKKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTD 397 (2096)
Q Consensus 332 -------------~~~~~~~l~~rp~~~~~~~e~-llg~~~~~fL~~~~~~~LP~LVl~~~~~~~~~~~i~~ia~~~~~~ 397 (2096)
+-+++.....-|++.+++|.. |+. ...+||..+ |.. |..+.-.-++.++...|.-.-..
T Consensus 346 ~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~-~~~qLlsvt-----~t~-Ls~~~~~~vIrmls~msS~~pl~ 418 (1051)
T KOG0168|consen 346 YQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLIT-NIQQLLSVT-----PTI-LSNGTYTGVIRMLSLMSSGSPLL 418 (1051)
T ss_pred hccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHH-HHHHHHhcC-----ccc-ccccchhHHHHHHHHHccCChHH
Confidence 233778888999999999961 111 223444433 222 22222222344555554433333
Q ss_pred chhHHhhhHHHHHHHHhcc
Q 000134 398 MVPLIVTWIPKVLAFALHQ 416 (2096)
Q Consensus 398 ~~~l~~~~~~~Ila~ll~~ 416 (2096)
...++..+...+|-++|..
T Consensus 419 ~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 419 FRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred HHHHHHhhHHHHHHHHHhc
Confidence 5677778888888888753
No 171
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=69.86 E-value=59 Score=37.12 Aligned_cols=84 Identities=17% Similarity=0.180 Sum_probs=59.7
Q ss_pred ChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccchhhhhhhhhhH
Q 000134 254 DPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFD 333 (2096)
Q Consensus 254 d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~~~l~~ 333 (2096)
||.|.-++++++|+++.+. +-+.---+-.+...|..+++.||..|..-+-.+. ..-+..++.+++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~---~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li-----------~~d~ik~k~~l~~ 66 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY---PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLI-----------LEDMIKVKGQLFS 66 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC---cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHH-----------HcCceeehhhhhH
Confidence 6889999999999997765 3444445666888999999999999999998873 2333334455645
Q ss_pred HHHHHhcCchHHHHHHHH
Q 000134 334 YLSVRLASRPIMVREFAE 351 (2096)
Q Consensus 334 ~~~~~l~~rp~~~~~~~e 351 (2096)
.+.+-+.-.-..++.+|+
T Consensus 67 ~~l~~l~D~~~~Ir~~A~ 84 (178)
T PF12717_consen 67 RILKLLVDENPEIRSLAR 84 (178)
T ss_pred HHHHHHcCCCHHHHHHHH
Confidence 555566555556677665
No 172
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=69.83 E-value=66 Score=36.69 Aligned_cols=111 Identities=10% Similarity=0.114 Sum_probs=78.0
Q ss_pred chhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHHH
Q 000134 163 EVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLL 242 (2096)
Q Consensus 163 ~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (2096)
.|+.-++.+|.-++.-.+ + + -++|+.++...|.|++..||+.+-..+.+.+.+ +..+.+..-|.
T Consensus 3 ~vR~n~i~~l~DL~~r~~-~-~---ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-----------d~ik~k~~l~~ 66 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYP-N-L---VEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-----------DMIKVKGQLFS 66 (178)
T ss_pred HHHHHHHHHHHHHHHhCc-H-H---HHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-----------CceeehhhhhH
Confidence 456666777776665544 2 1 366999999999999999999999999997622 13344433333
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCC
Q 000134 243 DVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNP 293 (2096)
Q Consensus 243 ~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~ 293 (2096)
..+ ..+ .-+|+.|.+.......++.... +++.+...++-+|-+|.+.
T Consensus 67 ~~l-~~l-~D~~~~Ir~~A~~~~~e~~~~~--~~~~i~~~~~e~i~~l~~~ 113 (178)
T PF12717_consen 67 RIL-KLL-VDENPEIRSLARSFFSELLKKR--NPNIIYNNFPELISSLNNC 113 (178)
T ss_pred HHH-HHH-cCCCHHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHhCc
Confidence 333 333 4467889999999999985443 7888888888888888775
No 173
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=69.52 E-value=1.1e+02 Score=38.12 Aligned_cols=106 Identities=14% Similarity=0.238 Sum_probs=57.5
Q ss_pred HHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCC
Q 000134 495 HFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSP 574 (2096)
Q Consensus 495 ~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL~~~~L~~~~l~~W~~fv~~L~~~~~ 574 (2096)
+-||+++++.. .+...-...+..|+.+-...-.....-.|.|. +-..+.+...|+++|..++..++ +
T Consensus 153 ~aLai~~fv~~-----~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~-----~~~~~~l~~aAL~aW~lLlt~~~---~ 219 (309)
T PF05004_consen 153 EALAICTFVGG-----SDEEETEELMESLESIFLLSILKSDGNAPVVA-----AEDDAALVAAALSAWALLLTTLP---D 219 (309)
T ss_pred HHHHHHHHhhc-----CChhHHHHHHHHHHHHHHHHhcCcCCCccccc-----CCCccHHHHHHHHHHHHHHhcCC---H
Confidence 36889998863 23333344555555443322111111111111 11234577789999999998874 2
Q ss_pred cchhhHHHHHHHHhhhccccCCCCchhhHHHHHHHHHHH
Q 000134 575 SSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDL 613 (2096)
Q Consensus 575 ~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il~~L 613 (2096)
..+..++...+..|..+++..+-...+...+++.++.++
T Consensus 220 ~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 220 SKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 457777777888888888755432223333444444433
No 174
>PTZ00429 beta-adaptin; Provisional
Probab=69.32 E-value=4.8e+02 Score=36.75 Aligned_cols=119 Identities=15% Similarity=0.127 Sum_probs=78.2
Q ss_pred HHHHHHHccCCch--hhhh-hhhHHHHHHHHHhhcccH-HHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHHHHHH
Q 000134 170 RVIRRILVHGTRD--VLLK-TRSEWIKCIEFLLLNKRK-AIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVI 245 (2096)
Q Consensus 170 ~~l~~il~h~~~~--~~~~-~~~~w~~~~~~~~~~~~r-~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (2096)
+-|.+-+.|+..| .-.+ .+++-.+. ...|.+++. ..|+|..+.|.... .|. +. -..|.+-+
T Consensus 10 ~~~~~~~~~~~~~~~~f~~~~kge~~EL-r~~L~s~~~~~kk~alKkvIa~mt---------~G~---Dv--S~LF~dVv 74 (746)
T PTZ00429 10 ERIQRKLEETKTGSKYFAQTRRGEGAEL-QNDLNGTDSYRKKAAVKRIIANMT---------MGR---DV--SYLFVDVV 74 (746)
T ss_pred HHHHHHhhcCCCccccccccccchHHHH-HHHHHCCCHHHHHHHHHHHHHHHH---------CCC---Cc--hHHHHHHH
Confidence 4566677787755 1111 12232222 223455544 45777777777754 121 11 13556666
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHH
Q 000134 246 KLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKS 308 (2096)
Q Consensus 246 ~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l 308 (2096)
+ +-+.+|..++--+-+-+... ...+.|+..++.=.|..-|.++|++||+.|.+.+.++
T Consensus 75 k--~~~S~d~elKKLvYLYL~~y---a~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~I 132 (746)
T PTZ00429 75 K--LAPSTDLELKKLVYLYVLST---ARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCI 132 (746)
T ss_pred H--HhCCCCHHHHHHHHHHHHHH---cccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC
Confidence 5 45677898999888888886 3357888777777899999999999999999988776
No 175
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=69.29 E-value=55 Score=39.94 Aligned_cols=104 Identities=15% Similarity=0.116 Sum_probs=77.9
Q ss_pred HHHHHHHHHH-HHHcCChHHHHHHHHHHhhcC-----CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccc
Q 000134 1349 GNCWLQYAKL-CRLAGHYETATRAILEAQASG-----APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAIS 1422 (2096)
Q Consensus 1349 ~~~WL~~Akl-ARKag~~~~A~~all~a~~~~-----~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~ 1422 (2096)
...|...|.- -.+.|.++.|..++....... .|++.+-.+++++.+|+..+|+..++..++..|.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~--------- 212 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK--------- 212 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---------
Confidence 3567777764 467899999998887765432 2578999999999999999999999998764331
Q ss_pred cccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchH
Q 000134 1423 SITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWE 1487 (2096)
Q Consensus 1423 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~we 1487 (2096)
++....+++++|.-..+.| +.+...+.|+++++.+|+.+
T Consensus 213 ------------------------s~~~~dAl~klg~~~~~~g--~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 213 ------------------------SPKAADAMFKVGVIMQDKG--DTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred ------------------------CcchhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCcCCH
Confidence 1122456777777666555 58889999999999998764
No 176
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=69.09 E-value=5.8 Score=31.90 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=23.4
Q ss_pred HHHHhHhhcCHHHHHHHHHHHHccCCCc
Q 000134 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTS 1147 (2096)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~ 1147 (2096)
....|...|+|++|..+|+++++..|++
T Consensus 7 ~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 7 LGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3556889999999999999999999864
No 177
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=68.93 E-value=18 Score=37.29 Aligned_cols=92 Identities=13% Similarity=0.246 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHhccccccchhhHHHHHHHHhcC--CCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhccc
Q 000134 516 QKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINK--ESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLE 593 (2096)
Q Consensus 516 k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL~~--~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~ 593 (2096)
|+-.|.+|.....-+|..+..+.++|+--+...+.. ...|+.|+++-.-+++... .++-+.+..||..+.....
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~----~~~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVAR----GEILPYFNEIFDALCKLSA 78 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHc
Confidence 566788888888888888999999999999888864 4589999999888888764 4566789999999999886
Q ss_pred cCCCCchhhHHHHHHHHHHHHH
Q 000134 594 RDKDNPSVLLNKVVKILEDLVL 615 (2096)
Q Consensus 594 ~~~~~~~~~~~~~~~il~~Li~ 615 (2096)
..++ ..+.+.++|+.|+.
T Consensus 79 D~d~----~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 79 DPDE----NVRSAAELLDRLLK 96 (97)
T ss_pred CCch----hHHHHHHHHHHHhc
Confidence 3332 25778888888764
No 178
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=68.64 E-value=7.1 Score=36.42 Aligned_cols=51 Identities=20% Similarity=0.188 Sum_probs=43.4
Q ss_pred HHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1359 CRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1359 ARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
+.+.|.++.|...+.++.+.. ++.+.+..|+++...|+.++|...|++.+.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 357899999999999987764 567899999999999999999999998765
No 179
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=68.63 E-value=7.4 Score=44.22 Aligned_cols=63 Identities=17% Similarity=0.258 Sum_probs=45.5
Q ss_pred HHHHHHHhhcCCCCCchhhhhhHHhhhccccCchHHHHHHHHHHHHHH---HhchhhHHHHHHHhhcCC
Q 000134 1578 KVMSIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVL---RQYPQQGLWIMAAVSKST 1643 (2096)
Q Consensus 1578 ~v~~~~~~~~~~iP~~~wl~~lPQLisRl~h~~~~v~~~l~~il~kv~---~~yPqq~lw~l~~~~~S~ 1643 (2096)
.|....-+.+.+.|....+..+||||+.+.++... .+...|.+-+ ..+-||.+|.|.+.+..+
T Consensus 86 ~Vr~yAvr~L~~~~~e~l~~YlpQLVQaLryd~~~---~l~~FLl~~A~~s~~faHql~W~lkae~~~d 151 (175)
T cd00871 86 LVLQYAVRVLESYPVETVFFYIPQIVQALRYDKMG---YVEEYILETAKRSQLFAHQIIWNMQTNCYKD 151 (175)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccccc---hHHHHHHHHHhhhHHHHHHHHHHHHHhccCC
Confidence 34555556778899999999999999999997642 3333333333 347899999998876543
No 180
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=67.90 E-value=1.2e+02 Score=36.25 Aligned_cols=169 Identities=14% Similarity=0.080 Sum_probs=98.9
Q ss_pred hhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCccccc
Q 000134 155 FLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASS 234 (2096)
Q Consensus 155 ~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (2096)
-+-.+++.+++..++..|+....|.. +.. ...++-|..+...+...++--.-+.+..+. +.++..-
T Consensus 8 ~l~~~~~~~~~~~~L~~L~~l~~~~~--~~~---~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw---------~~~~r~f 73 (234)
T PF12530_consen 8 KLGKISDPELQLPLLEALPSLACHKN--VCV---PPVLQTLVSLVEQGSLELRYVALRLLTLLW---------KANDRHF 73 (234)
T ss_pred HhcCCCChHHHHHHHHHHHHHhccCc--cch---hHHHHHHHHHHcCCchhHHHHHHHHHHHHH---------HhCchHH
Confidence 36778899999999999999999973 222 224566666766666666444444444433 2221110
Q ss_pred chhhHHHHHH-HHHHhhhcCChhHHHHHHH----HHHHHHhhhcccchhHHHHHHH-HHHhh-CCCCcchHHHHHHHHHH
Q 000134 235 RSNELKLLDV-IKLAFTAADDPLILETLLE----STAELMMAVDVHSQHFLFLLIL-LVEQL-DNPHVTVRMNASRLIRK 307 (2096)
Q Consensus 235 ~~~~~~~~~~-~~~~~~~~~d~~i~eTll~----~~~~i~~~~~~~~e~~~~~l~~-Li~~L-~~~n~~v~~~A~~~i~~ 307 (2096)
..-+.++.. ..++-....+.+..-.+.. ++..|+....- ....++. +-..| ++.+..+++.|..-|..
T Consensus 74 -~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~ 148 (234)
T PF12530_consen 74 -PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAP 148 (234)
T ss_pred -HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 111223322 1121222222222223333 66677654322 3333333 55666 89999999999999999
Q ss_pred HhhhhcccccccccchhhhhhhhhhHHHHHH--hcCchHHHHHHHHHHhC
Q 000134 308 SCFFHLKGGCELLVSKAVLICNELFDYLSVR--LASRPIMVREFAEAAFG 355 (2096)
Q Consensus 308 l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~--l~~rp~~~~~~~e~llg 355 (2096)
+|+..-...|.. |.-+.++ ...||.+++.+|+ +++
T Consensus 149 Lc~~~vvd~~s~------------w~vl~~~l~~~~rp~v~~~l~~-l~~ 185 (234)
T PF12530_consen 149 LCEAEVVDFYSA------------WKVLQKKLSLDYRPLVLKSLCS-LFA 185 (234)
T ss_pred HHHHhhccHHHH------------HHHHHHhcCCccchHHHHHHHH-HHH
Confidence 997765543322 4445555 4899999999997 555
No 181
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=67.01 E-value=34 Score=42.26 Aligned_cols=148 Identities=14% Similarity=0.177 Sum_probs=97.9
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhccCChh----HH
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQ----DE 1120 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~~sl~----~q 1120 (2096)
+.|..-..+|.|.-||..++.. . .-+.+-....||=.+|-+|-...........+.+ +-
T Consensus 107 ~~A~i~~~~~~~~~AL~~l~~~-~----------------~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qL 169 (290)
T PF04733_consen 107 LAATILFHEGDYEEALKLLHKG-G----------------SLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQL 169 (290)
T ss_dssp HHHHHHCCCCHHHHHHCCCTTT-T----------------CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHcc-C----------------cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence 4455666778888888887642 0 1245667888999999999999987754433222 21
Q ss_pred HHH--hHhh--cCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhc
Q 000134 1121 LLS--NKKS--GNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRL 1196 (2096)
Q Consensus 1121 il~--~E~~--G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrl 1196 (2096)
+.. .-.. +...+|.-.|+...+..+.+.....|+..|...+|+|+........-+...|.....+. -.+-++..+
T Consensus 170 a~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~La-Nliv~~~~~ 248 (290)
T PF04733_consen 170 AEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLA-NLIVCSLHL 248 (290)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHH-HHHHHHHHT
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHH-HHHHHHHHh
Confidence 111 1223 36999999999988887888888889999999999999876655544445454433333 346678899
Q ss_pred CCh-hhHHHhhcccC
Q 000134 1197 GRW-DLMDEYLSGAD 1210 (2096)
Q Consensus 1197 g~W-d~l~~~l~~~~ 1210 (2096)
|+. +..++++++..
T Consensus 249 gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 249 GKPTEAAERYLSQLK 263 (290)
T ss_dssp T-TCHHHHHHHHHCH
T ss_pred CCChhHHHHHHHHHH
Confidence 999 66788887754
No 182
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=66.51 E-value=4.7e+02 Score=35.57 Aligned_cols=139 Identities=17% Similarity=0.284 Sum_probs=83.5
Q ss_pred HHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhccCChhHHHHHh--
Q 000134 1047 ARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSN-- 1124 (2096)
Q Consensus 1047 A~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~~sl~~qil~~-- 1124 (2096)
+..+++.+.|-.+|-..++-..+...+ | +.+.-.--+-..|++.+..+-..+.--..++..+++||
T Consensus 14 ~lk~yE~kQYkkgLK~~~~iL~k~~eH--------g----eslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~ 81 (700)
T KOG1156|consen 14 ALKCYETKQYKKGLKLIKQILKKFPEH--------G----ESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVL 81 (700)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhCCcc--------c----hhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHH
Confidence 345667788999999988865532111 0 12222222445677777777666643345677777776
Q ss_pred ----HhhcCHHHHHHHHHHHHccCCCchhhhh--hHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCC
Q 000134 1125 ----KKSGNWAEVFTSCEQALQMEPTSVQRHS--DVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGR 1198 (2096)
Q Consensus 1125 ----E~~G~W~~A~~~YE~~Lq~~p~~~~~~~--glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~ 1198 (2096)
+....+.+|..||..||.-+|+|....- .+|+. ++|+++....--..++...|.....|..+++ |+--+|+
T Consensus 82 gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~--QmRd~~~~~~tr~~LLql~~~~ra~w~~~Av-s~~L~g~ 158 (700)
T KOG1156|consen 82 GLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQI--QMRDYEGYLETRNQLLQLRPSQRASWIGFAV-AQHLLGE 158 (700)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH--HHHhhhhHHHHHHHHHHhhhhhHHHHHHHHH-HHHHHHH
Confidence 7888999999999999999999875422 22221 3455554433333344445555555665555 3344455
Q ss_pred hh
Q 000134 1199 WD 1200 (2096)
Q Consensus 1199 Wd 1200 (2096)
..
T Consensus 159 y~ 160 (700)
T KOG1156|consen 159 YK 160 (700)
T ss_pred HH
Confidence 43
No 183
>PF13575 DUF4135: Domain of unknown function (DUF4135)
Probab=66.50 E-value=38 Score=43.33 Aligned_cols=107 Identities=21% Similarity=0.221 Sum_probs=79.6
Q ss_pred eEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceeeecCCcceeEecCCCccHHHHHHHHHHhcCCCcc
Q 000134 1780 PFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDR 1859 (2096)
Q Consensus 1780 ~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~ 1859 (2096)
.++.|| .+++.|..+.+|+..+|.-.... .+.++++.+++-+.+.|-.|||++...-
T Consensus 72 kivYKP-Rsl~~d~~f~~l~~~ln~~~~~~------~~~l~~~~~l~~g~~YgW~EfI~~~~c~---------------- 128 (370)
T PF13575_consen 72 KIVYKP-RSLSIDKAFNDLLEWLNEKNGTP------SLDLPTPKVLDRGDGYGWQEFIEHEPCN---------------- 128 (370)
T ss_pred EEEEeC-cccHHHHHHHHHHHHHhhhcccc------ccccccceeeeccCcceeEEEecCCCCC----------------
Confidence 466784 78999999999999999885432 3567888888888779999999963210
Q ss_pred ccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHHHHHhhCCChhHHHHHHHHHHHHhhHHHHHhhhccccCCCCCc
Q 000134 1860 QKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGEN 1939 (2096)
Q Consensus 1860 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf~~~f~~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eN 1939 (2096)
...++ .+|=+-++....+.|+||..|=|-||
T Consensus 129 --~~~ev-----------------------------------------------~~yY~r~G~llal~y~L~~~DlH~EN 159 (370)
T PF13575_consen 129 --SEEEV-----------------------------------------------ERYYYRLGVLLALLYLLNGTDLHFEN 159 (370)
T ss_pred --CHHHH-----------------------------------------------HHHHHHHHHHHHHHHHhCCCcccccc
Confidence 00011 12223456677788999999999999
Q ss_pred eeeecCCCcEEeeeccccccc
Q 000134 1940 ILFDSTTGDCVHVDFSCLFDK 1960 (2096)
Q Consensus 1940 ILld~~tG~vvHIDF~~~F~k 1960 (2096)
|.-+ .+.-|=||+-++|..
T Consensus 160 IIa~--g~~PvlIDlETlf~~ 178 (370)
T PF13575_consen 160 IIAS--GEYPVLIDLETLFHP 178 (370)
T ss_pred eEEe--CCCcEEEehhhhCCc
Confidence 9985 677888999888865
No 184
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=66.48 E-value=85 Score=35.30 Aligned_cols=118 Identities=12% Similarity=0.078 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHH
Q 000134 1382 NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWI 1461 (2096)
Q Consensus 1382 ~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl 1461 (2096)
......+..++..|+..+|+..++++++..+. ....+.++..+|.-.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---------------------------------~~~~~~~~~~la~~~ 82 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEED---------------------------------PNDRSYILYNMGIIY 82 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc---------------------------------cchHHHHHHHHHHHH
Confidence 35677788999999999999999988752110 001133445555544
Q ss_pred HHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCc
Q 000134 1462 HYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHK 1541 (2096)
Q Consensus 1462 ~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~ 1541 (2096)
...|+ .++.+..|.+|++.+|....++..+|..|-.+-.... . .+. ......+...++..|-+++..++.
T Consensus 83 ~~~g~--~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~-a------~~~-~~~A~~~~~~A~~~~~~a~~~~p~ 152 (172)
T PRK02603 83 ASNGE--HDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAE-E------AGD-QDEAEALFDKAAEYWKQAIRLAPN 152 (172)
T ss_pred HHcCC--HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHh-H------hhC-HHHHHHHHHHHHHHHHHHHhhCch
Confidence 44443 6788899999999999988888888887654321000 0 000 111223455678888888877766
Q ss_pred c
Q 000134 1542 N 1542 (2096)
Q Consensus 1542 ~ 1542 (2096)
.
T Consensus 153 ~ 153 (172)
T PRK02603 153 N 153 (172)
T ss_pred h
Confidence 4
No 185
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=66.26 E-value=1.2e+02 Score=40.08 Aligned_cols=179 Identities=15% Similarity=0.104 Sum_probs=110.6
Q ss_pred hhhHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCh--HHHHHHHHHHHcCCchHHHHHHH
Q 000134 1328 REPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAPN--VHMEKAKLLWSTRRSDGAIAELQ 1405 (2096)
Q Consensus 1328 ~e~iLslRr~vl~~~~~~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~~~--~~iE~AKLLW~~g~~~~Ai~~L~ 1405 (2096)
-+-+|.+-.+|..- ++.++.|......--.++.-+.|..||.+|.++.+.+ +.+.-|=-+=.+|.+.+|+.+|.
T Consensus 302 ~~A~LafEAAVkqd----P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~ 377 (579)
T KOG1125|consen 302 SEAALAFEAAVKQD----PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLD 377 (579)
T ss_pred hHHHHHHHHHHhhC----hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 34566666655543 4668889999988889999999999999999987654 66777777788999999999999
Q ss_pred HHhhcCCccc-ccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHH----------------HHHhCCCC
Q 000134 1406 QNLLNKPVEV-VGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRW----------------IHYTGQKQ 1468 (2096)
Q Consensus 1406 ~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakW----------------l~~~~~~~ 1468 (2096)
+=|..-+... ...+. .... +.++ +.+.+ +.....+.+.+|-.++= +.-+ ..
T Consensus 378 ~Wi~~~p~y~~l~~a~---~~~~---~~~~-~s~~~---~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls--~e 445 (579)
T KOG1125|consen 378 KWIRNKPKYVHLVSAG---ENED---FENT-KSFLD---SSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS--GE 445 (579)
T ss_pred HHHHhCccchhccccC---cccc---ccCC-cCCCC---HHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc--hH
Confidence 9887544321 11100 0000 0000 00000 00011112222222221 1111 12
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcchh
Q 000134 1469 KEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLF 1544 (2096)
Q Consensus 1469 ~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~~~ 1544 (2096)
.+..+..|+.|....|+-+.-|-.||--.- | |. --..||..|-+|+.+-+.|++
T Consensus 446 fdraiDcf~~AL~v~Pnd~~lWNRLGAtLA------------N---~~-------~s~EAIsAY~rALqLqP~yVR 499 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKPNDYLLWNRLGATLA------------N---GN-------RSEEAISAYNRALQLQPGYVR 499 (579)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHhhHHhc------------C---Cc-------ccHHHHHHHHHHHhcCCCeee
Confidence 466778899999999999988888875321 1 00 012599999999999998874
No 186
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=66.17 E-value=1.2e+02 Score=38.44 Aligned_cols=144 Identities=16% Similarity=0.219 Sum_probs=89.2
Q ss_pred CChHHHHHHHHHHHHHHHH-hcc-------ccccchhhHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCCcchh-hHH
Q 000134 511 EDLSLQKQALKRIEILIEM-IGS-------HLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTK-HVI 581 (2096)
Q Consensus 511 ~~~~~k~~~l~sl~~li~l-~g~-------~v~~~~pqI~a~L~~aL~~~~L~~~~l~~W~~fv~~L~~~~~~~l~-~ll 581 (2096)
-+++.||.+-.-...+++. .|+ ++..-+|+|+.+|..+-+.++....|=..-+.+++. +.+. .+|
T Consensus 88 L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~------e~l~~~iL 161 (335)
T PF08569_consen 88 LDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKH------ESLAKIIL 161 (335)
T ss_dssp S-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTS------HHHHHHHH
T ss_pred CCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhh------HHHHHHHh
Confidence 3577777777777777765 333 344567999999999999887544444444444432 2221 122
Q ss_pred -HHHHHHhhhccccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCChhhhHHHHHHHHHhcCCCCHHHHHHHH
Q 000134 582 -SQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAA 660 (2096)
Q Consensus 582 -~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~ 660 (2096)
+..|..+..|++. ..-.+...|...|+.|+..|+....+++. . ....-+..+
T Consensus 162 ~~~~f~~ff~~~~~---~~Fdiasdaf~t~~~llt~hk~~~a~fl~-----------~-------------n~d~ff~~~ 214 (335)
T PF08569_consen 162 YSECFWKFFKYVQL---PNFDIASDAFSTFKELLTRHKKLVAEFLS-----------N-------------NYDRFFQKY 214 (335)
T ss_dssp TSGGGGGHHHHTTS---SSHHHHHHHHHHHHHHHHSSHHHHHHHHH-----------H-------------THHHHHHHH
T ss_pred CcHHHHHHHHHhcC---CccHhHHHHHHHHHHHHhccHHHHHHHHH-----------H-------------HHHHHHHHH
Confidence 2333334444431 12235677889999999999988877761 1 123344566
Q ss_pred HhhccCCChhHHHHHHHHHHHHHhhcH
Q 000134 661 VDGLNHENLNVRYMVVCELSKLLKLKS 687 (2096)
Q Consensus 661 ~~~l~~en~~Vr~~aL~eL~~~L~~~~ 687 (2096)
..-++++|=-.+.|+|+=|.++|..+.
T Consensus 215 ~~Ll~s~NYvtkrqslkLL~ellldr~ 241 (335)
T PF08569_consen 215 NKLLESSNYVTKRQSLKLLGELLLDRS 241 (335)
T ss_dssp HHHCT-SSHHHHHHHHHHHHHHHHSGG
T ss_pred HHHccCCCeEeehhhHHHHHHHHHchh
Confidence 677888887779999999999997654
No 187
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=65.91 E-value=4.8e+02 Score=35.46 Aligned_cols=98 Identities=16% Similarity=0.232 Sum_probs=67.9
Q ss_pred HHHHHHHHhhhccCChhhhhhHHHHHHhhc--CcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC------
Q 000134 1310 LMANWENRLKYTQPSLWAREPLLAFRRMVF--GASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAP------ 1381 (2096)
Q Consensus 1310 l~~~W~~RL~~~~~~~~~~e~iLslRr~vl--~~~~~~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~~------ 1381 (2096)
....|-+|.++..++.. +.+...-.++. .+.......+.+|..+|++-..+|.++.|.--..+|-..+-+
T Consensus 348 nV~eW~kRV~l~e~~~~--~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa 425 (835)
T KOG2047|consen 348 NVEEWHKRVKLYEGNAA--EQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLA 425 (835)
T ss_pred cHHHHHhhhhhhcCChH--HHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHH
Confidence 45679999888877532 33444444443 334445677899999999999999999999999988765432
Q ss_pred hHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1382 NVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1382 ~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
++.++-|..--...+.+.|+.+++.+..
T Consensus 426 ~vw~~waemElrh~~~~~Al~lm~~A~~ 453 (835)
T KOG2047|consen 426 EVWCAWAEMELRHENFEAALKLMRRATH 453 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhc
Confidence 3455556553334457789998888753
No 188
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.67 E-value=14 Score=43.88 Aligned_cols=54 Identities=17% Similarity=0.198 Sum_probs=42.6
Q ss_pred HHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhh
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGL 1174 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl 1174 (2096)
.+.+|..|+|.+|.+.||..|+.+|++.-.+...+--++..|+--..+...+..
T Consensus 93 am~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~Y 146 (289)
T KOG3060|consen 93 AMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEY 146 (289)
T ss_pred HHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 556899999999999999999999998777767777777888865554444443
No 189
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=64.62 E-value=63 Score=41.94 Aligned_cols=127 Identities=20% Similarity=0.164 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccC
Q 000134 1351 CWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLS 1428 (2096)
Q Consensus 1351 ~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~ 1428 (2096)
.|.--+.+..++|+...|...+.+|....+ +-+.+-+|..|-+.|+..+||..|+..+.+.|.+..|-.
T Consensus 342 ~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~--------- 412 (484)
T COG4783 342 YLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWD--------- 412 (484)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHH---------
Confidence 445567889999999999999999987753 568899999999999999999999998775543221110
Q ss_pred CCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHH
Q 000134 1429 LVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVL 1501 (2096)
Q Consensus 1429 ~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~ 1501 (2096)
...|...+.-+.+++.+-+++.+-.+|. .++.+..++.|-+. ...++..|++|-+.+-
T Consensus 413 ----------~LAqay~~~g~~~~a~~A~AE~~~~~G~--~~~A~~~l~~A~~~---~~~~~~~~aR~dari~ 470 (484)
T COG4783 413 ----------LLAQAYAELGNRAEALLARAEGYALAGR--LEQAIIFLMRASQQ---VKLGFPDWARADARID 470 (484)
T ss_pred ----------HHHHHHHHhCchHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHh---ccCCcHHHHHHHHHHH
Confidence 0112222222334455555555444444 33344444444333 3456777888777664
No 190
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=63.54 E-value=27 Score=36.82 Aligned_cols=86 Identities=15% Similarity=0.108 Sum_probs=52.2
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhC
Q 000134 1386 EKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTG 1465 (2096)
Q Consensus 1386 E~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~ 1465 (2096)
|.|+=+|.+|+|.+|+.+++..+.... +.. ....-...-+.++..+|+=++...
T Consensus 1 e~A~~~~~rGnhiKAL~iied~i~~h~-----~~~---------------------~~~~lh~~QG~if~~lA~~ten~d 54 (111)
T PF04781_consen 1 EKAKDYFARGNHIKALEIIEDLISRHG-----EDE---------------------SSWLLHRLQGTIFYKLAKKTENPD 54 (111)
T ss_pred ChHHHHHHccCHHHHHHHHHHHHHHcc-----CCC---------------------chHHHHHHHhHHHHHHHHhccCch
Confidence 468889999999999999999886321 100 000011222334444443322111
Q ss_pred C--CCHHHHHHHHHHHHHhccchHHHHHHHHhhh
Q 000134 1466 Q--KQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497 (2096)
Q Consensus 1466 ~--~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~ 1497 (2096)
- ..--..+..|++++.+.|.+..+.|.+|+.+
T Consensus 55 ~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~~l 88 (111)
T PF04781_consen 55 VKFRYLLGSVECFSRAVELSPDSAHSLFELASQL 88 (111)
T ss_pred HHHHHHHHhHHHHHHHhccChhHHHHHHHHHHHh
Confidence 0 0112345789999999999988899888753
No 191
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=63.47 E-value=39 Score=33.10 Aligned_cols=80 Identities=13% Similarity=0.209 Sum_probs=55.8
Q ss_pred HHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhccc
Q 000134 196 EFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVH 275 (2096)
Q Consensus 196 ~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~ 275 (2096)
+.+..|++..||..++..+..+ .....+..+.+.+ .-+|+.|+...+.++|+|+...
T Consensus 6 ~~l~~~~~~~vr~~a~~~L~~~-------------------~~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i~~~~--- 62 (88)
T PF13646_consen 6 QLLQNDPDPQVRAEAARALGEL-------------------GDPEAIPALIELL-KDEDPMVRRAAARALGRIGDPE--- 62 (88)
T ss_dssp HHHHTSSSHHHHHHHHHHHHCC-------------------THHHHHHHHHHHH-TSSSHHHHHHHHHHHHCCHHHH---
T ss_pred HHHhcCCCHHHHHHHHHHHHHc-------------------CCHhHHHHHHHHH-cCCCHHHHHHHHHHHHHhCCHH---
Confidence 4455899999999998887741 1224466666766 5588999999999999984322
Q ss_pred chhHHHHHHHHHHhhCCC-CcchHHHHHHH
Q 000134 276 SQHFLFLLILLVEQLDNP-HVTVRMNASRL 304 (2096)
Q Consensus 276 ~e~~~~~l~~Li~~L~~~-n~~v~~~A~~~ 304 (2096)
++-.|++.|.++ +..||..|..-
T Consensus 63 ------~~~~L~~~l~~~~~~~vr~~a~~a 86 (88)
T PF13646_consen 63 ------AIPALIKLLQDDDDEVVREAAAEA 86 (88)
T ss_dssp ------THHHHHHHHTC-SSHHHHHHHHHH
T ss_pred ------HHHHHHHHHcCCCcHHHHHHHHhh
Confidence 455677777775 45567776543
No 192
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=62.88 E-value=28 Score=35.73 Aligned_cols=101 Identities=14% Similarity=0.130 Sum_probs=66.0
Q ss_pred HhhcccHHHHHHHHHHHhHhhhh--hhhhhhccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhccc
Q 000134 198 LLLNKRKAIRDAFCTQIGYFLQD--TVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVH 275 (2096)
Q Consensus 198 ~~~~~~r~vR~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~ 275 (2096)
++.+++..+|..++..+..+-.+ .....+ .+..++..+...+.. +|+.+++..+-+++.|.......
T Consensus 15 ~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~----------~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~ 83 (120)
T cd00020 15 LLSSSDENVQREAAWALSNLSAGNNDNIQAV----------VEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGPEDN 83 (120)
T ss_pred HHHcCCHHHHHHHHHHHHHHhcCCHHHHHHH----------HHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCcHHH
Confidence 33788888999998888886521 111111 112445555554443 68899999999999995322222
Q ss_pred chhHHH--HHHHHHHhhCCCCcchHHHHHHHHHHHh
Q 000134 276 SQHFLF--LLILLVEQLDNPHVTVRMNASRLIRKSC 309 (2096)
Q Consensus 276 ~e~~~~--~l~~Li~~L~~~n~~v~~~A~~~i~~l~ 309 (2096)
.+.+.- .+-.|++.|+..+.-++..|..-+.++|
T Consensus 84 ~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 84 KLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 233222 3556889999999999988888887775
No 193
>PRK14574 hmsH outer membrane protein; Provisional
Probab=62.70 E-value=6.5e+02 Score=35.93 Aligned_cols=148 Identities=7% Similarity=-0.022 Sum_probs=95.8
Q ss_pred HHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH--hccCC----hhHHH
Q 000134 1048 RASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----LQDEL 1121 (2096)
Q Consensus 1048 ~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~--~~~~s----l~~qi 1121 (2096)
..+..-|.+..|+.|+|.++... + .....+..+..+|...+++|...-+.+. ...++ +...+
T Consensus 76 ~l~~~~G~~~~A~~~~eka~~p~-----n-------~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa 143 (822)
T PRK14574 76 QIAGWAGRDQEVIDVYERYQSSM-----N-------ISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMI 143 (822)
T ss_pred HHHHHcCCcHHHHHHHHHhccCC-----C-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 33444499999999999987211 1 0112233447799999999988887653 22222 22345
Q ss_pred HHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChhh
Q 000134 1122 LSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDL 1201 (2096)
Q Consensus 1122 l~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd~ 1201 (2096)
..+-..|+.++|+..++++....|++... .++..-+...+.+...+...+.+....|+... ....-+.+++++|-=+.
T Consensus 144 ~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e-~~~~~~~~l~~~~~~~~ 221 (822)
T PRK14574 144 MTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEE-VLKNHLEILQRNRIVEP 221 (822)
T ss_pred HHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCcHH
Confidence 66778899999999999999999985554 66666666666665566666777666675433 22334566677776544
Q ss_pred HHHhhccc
Q 000134 1202 MDEYLSGA 1209 (2096)
Q Consensus 1202 l~~~l~~~ 1209 (2096)
-.+.+...
T Consensus 222 a~~l~~~~ 229 (822)
T PRK14574 222 ALRLAKEN 229 (822)
T ss_pred HHHHHHhC
Confidence 44444433
No 194
>KOG3365 consensus NADH:ubiquinone oxidoreductase, NDUFA5/B13 subunit [Energy production and conversion]
Probab=62.53 E-value=4.6 Score=43.12 Aligned_cols=38 Identities=34% Similarity=0.754 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhccccccCCCCCCCCCHHHHHHHHHHHHhCcchhhhcCCcccCC
Q 000134 2042 RAISNIEARLQGSVVGVGAAPSLPLAVEGQARRLIAEAVSHKNLGKMYIWWMPW 2095 (2096)
Q Consensus 2042 ~~l~~i~~kL~g~~~~~~~~~~~~lsv~~qV~~LI~~Atd~~nL~~My~gW~Pw 2095 (2096)
..++.++++|+| ||+.++|.||-+.=|+.+|-..|-||
T Consensus 92 ~d~K~ledql~g----------------GqIEE~i~qa~~el~m~~k~~~wk~w 129 (145)
T KOG3365|consen 92 PDVKKLEDQLQG----------------GQIEEVIEQAEAELNMGRKMFEWKPW 129 (145)
T ss_pred hHHHHHHHHhcC----------------CchHHHHHHHHHHHHHHhhhhccccc
Confidence 456666666654 78999999999999999999999999
No 195
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=60.69 E-value=5.5e+02 Score=34.42 Aligned_cols=246 Identities=14% Similarity=0.161 Sum_probs=137.6
Q ss_pred HHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCCh
Q 000134 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRW 1199 (2096)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~W 1199 (2096)
.+-.+-.-+++.+-+...+..++..|.+.+...=-|-||-++|.-..|...+..+....|+..-.|...|+-= -.+|+.
T Consensus 250 ~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YY-l~i~k~ 328 (611)
T KOG1173|consen 250 KADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYY-LMIGKY 328 (611)
T ss_pred HHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHH-HHhcCc
Confidence 3444557789999999999999999988765444455999999999988888888888898777776665422 124788
Q ss_pred hhHHHhhcccCccCccccCCCCCcch---hHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHHHH
Q 000134 1200 DLMDEYLSGADEEGLLCSSSESNASF---DMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVK 1276 (2096)
Q Consensus 1200 d~l~~~l~~~~~~gl~~~~~~~~~~f---~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~k 1276 (2096)
+.-+.|++.+.. .+..| ..++|-++-...++|+.. ...-..+|.-.+..+... .-+ ++
T Consensus 329 seARry~SKat~---------lD~~fgpaWl~fghsfa~e~EhdQAm-aaY~tAarl~~G~hlP~L-----Ylg----me 389 (611)
T KOG1173|consen 329 SEARRYFSKATT---------LDPTFGPAWLAFGHSFAGEGEHDQAM-AAYFTAARLMPGCHLPSL-----YLG----ME 389 (611)
T ss_pred HHHHHHHHHHhh---------cCccccHHHHHHhHHhhhcchHHHHH-HHHHHHHHhccCCcchHH-----HHH----HH
Confidence 888888876543 22223 244555553333333221 111122222222111110 000 11
Q ss_pred hhhhhHHHHHHHhhhccccccccCCCCh--------------HHHHHHHHHHH---HHhhhccCChhhhhhHHHHHHhhc
Q 000134 1277 LHLLQELEDFHAILVNDSFLEKSFLPSD--------------LKFSKLMANWE---NRLKYTQPSLWAREPLLAFRRMVF 1339 (2096)
Q Consensus 1277 LH~L~ELee~~~~~~~~~~~~~~~~~~~--------------~~~~~l~~~W~---~RL~~~~~~~~~~e~iLslRr~vl 1339 (2096)
.|...-++.+...+...- ...+.+ ....+-.+-.+ .+.+-+.+....|+|
T Consensus 390 y~~t~n~kLAe~Ff~~A~----ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p--------- 456 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQAL----AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEP--------- 456 (611)
T ss_pred HHHhccHHHHHHHHHHHH----hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhH---------
Confidence 111222222222211000 000000 00111111111 222222222223444
Q ss_pred CcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC--hHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1340 GASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAP--NVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1340 ~~~~~~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~~--~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
+|...++++||-|.+..|.....+|..+.+. +.+---|=+.-..|.-+.||..+++++.
T Consensus 457 -----------~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 457 -----------TLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred -----------HHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 5788899999999999999999998877543 3444445566678999999999999875
No 196
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.30 E-value=5.3e+02 Score=34.06 Aligned_cols=122 Identities=21% Similarity=0.314 Sum_probs=77.3
Q ss_pred CCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc--CCChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccc
Q 000134 1344 LGAEVGNCWLQYAKLCRLAGHYETATRAILEAQAS--GAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAI 1421 (2096)
Q Consensus 1344 ~~~~~~~~WL~~AklARKag~~~~A~~all~a~~~--~~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~ 1421 (2096)
++++.+-..++.+-+.-+.++++.+.....++..- ..|+..-=+|.+|-++++.++|++.-..++.=-+.+ .
T Consensus 423 L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~---~--- 496 (606)
T KOG0547|consen 423 LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPRE---H--- 496 (606)
T ss_pred cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccc---c---
Confidence 44455555666666667777777776666666432 245666667777777777777777766665410000 0
Q ss_pred ccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhh
Q 000134 1422 SSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKY 1496 (2096)
Q Consensus 1422 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y 1496 (2096)
..-.+ --+++.|+.+++ +|. ...+...+..++|++++|++|-++-.||.+
T Consensus 497 -------~~~v~------------~~plV~Ka~l~~-qwk-----~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~ 546 (606)
T KOG0547|consen 497 -------LIIVN------------AAPLVHKALLVL-QWK-----EDINQAENLLRKAIELDPKCEQAYETLAQF 546 (606)
T ss_pred -------ccccc------------chhhhhhhHhhh-chh-----hhHHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence 00000 113456665544 587 346677888999999999999999999887
No 197
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=59.86 E-value=1.6e+02 Score=36.77 Aligned_cols=151 Identities=9% Similarity=0.042 Sum_probs=91.4
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHH----HHH--hccCC--
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGL----ARL--HKSLS-- 1116 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi----~~~--~~~~s-- 1116 (2096)
+.+..+...+.+.+|+-++|..+...+.. ...+.. ...|..+.+.++.... ... ...+.
T Consensus 48 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~------------~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 114 (355)
T cd05804 48 VEALSAWIAGDLPKALALLEQLLDDYPRD------------LLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYW 114 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCc------------HHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcH
Confidence 45778889999999999999987653211 011111 2223222222222221 111 00111
Q ss_pred --hhHHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChh---hhhhHhHHHHH
Q 000134 1117 --LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ---YKKTWCMQGVQ 1191 (2096)
Q Consensus 1117 --l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~---~~~~~~~~~vE 1191 (2096)
.......+...|++++|...|+++++..|++...+..+-.++.+.|+++....+.+......|. ......-....
T Consensus 115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 115 YLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 1123346789999999999999999999999888778888899999999888877655443332 11111112233
Q ss_pred HHHhcCChhhHHHhhcc
Q 000134 1192 AAWRLGRWDLMDEYLSG 1208 (2096)
Q Consensus 1192 AAWrlg~Wd~l~~~l~~ 1208 (2096)
..-..|+++.-..++..
T Consensus 195 ~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 195 FYLERGDYEAALAIYDT 211 (355)
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 45567888776666554
No 198
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=59.66 E-value=16 Score=37.27 Aligned_cols=76 Identities=26% Similarity=0.287 Sum_probs=55.1
Q ss_pred HHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHH
Q 000134 655 DQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCAD 734 (2096)
Q Consensus 655 ~~l~~~~~~l~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~ 734 (2096)
+.++..+.-+++..+.||-+||..|++++.++. +... -+..++.-++..-.+. ++=|=+.|-+
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~---------~~~~---~~~~il~l~l~~L~d~-----DsyVYL~aI~ 65 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS---------EPVI---DIPKILDLFLSQLKDE-----DSYVYLNAIK 65 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC---------cchh---hHHHHHHHHHHHcCCC-----CchHHHHHHH
Confidence 556777888888899999999999999998876 1111 1344555555444443 2457788889
Q ss_pred hhcccCccCcccc
Q 000134 735 CLGALGAVDPAKV 747 (2096)
Q Consensus 735 CLG~IGalDp~r~ 747 (2096)
||..++-.+|+++
T Consensus 66 ~L~~La~~~p~~v 78 (92)
T PF10363_consen 66 GLAALADRHPDEV 78 (92)
T ss_pred HHHHHHHHChHHH
Confidence 9999999999854
No 199
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=59.40 E-value=9.7 Score=30.02 Aligned_cols=28 Identities=18% Similarity=0.213 Sum_probs=24.1
Q ss_pred HHHHhHhhcCHHHHHHHHHHHHccCCCc
Q 000134 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTS 1147 (2096)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~ 1147 (2096)
....+.+.|+|++|...|+..+...|++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 3456778999999999999999999974
No 200
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=58.90 E-value=81 Score=38.27 Aligned_cols=176 Identities=16% Similarity=0.229 Sum_probs=94.6
Q ss_pred HHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhH-H-HHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhccccc
Q 000134 240 KLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHF-L-FLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGC 317 (2096)
Q Consensus 240 ~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~-~-~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~ 317 (2096)
.-|.++-..+...+||-|+|-.+.+.|... +-+..-++. - -++-.+...|..|++-+|..|.+-+.++|-...-
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~a-af~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en--- 87 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSA-AFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN--- 87 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhc-cChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh---
Confidence 345788888888999999999999999962 222222222 1 2355577889999999999999999888443211
Q ss_pred ccccchhhhhhhhhh-HHHHHHhcCch-----HHHHHHHHHHhCCChHH----HHHhhcccccchhhhccccChhHHHHH
Q 000134 318 ELLVSKAVLICNELF-DYLSVRLASRP-----IMVREFAEAAFGVETEE----LVKKMIPAVLPKLVVSQQDNDQAVNII 387 (2096)
Q Consensus 318 ~l~~~~~~~~~~~l~-~~~~~~l~~rp-----~~~~~~~e~llg~~~~~----fL~~~~~~~LP~LVl~~~~~~~~~~~i 387 (2096)
...| +.| ..+.+...+.| |++-. ..|..|++.+ .+....++.++ |..+.... .-..++
T Consensus 88 ------~~~I--k~~i~~Vc~~~~s~~lns~~Q~agL--rlL~nLtv~~~~~~~l~~~i~~ll~-LL~~G~~~-~k~~vL 155 (254)
T PF04826_consen 88 ------QEQI--KMYIPQVCEETVSSPLNSEVQLAGL--RLLTNLTVTNDYHHMLANYIPDLLS-LLSSGSEK-TKVQVL 155 (254)
T ss_pred ------HHHH--HHHHHHHHHHHhcCCCCCHHHHHHH--HHHHccCCCcchhhhHHhhHHHHHH-HHHcCChH-HHHHHH
Confidence 1111 112 22556566554 23211 2366676633 44444444432 22222221 112444
Q ss_pred HHHHHHcCC-C-chhHHhhhHHHHHHHHhccc-cHHHHHHHHHHHhh
Q 000134 388 NELAKCLNT-D-MVPLIVTWIPKVLAFALHQA-DERRLLSALEFYCI 431 (2096)
Q Consensus 388 ~~ia~~~~~-~-~~~l~~~~~~~Ila~ll~~~-~~~~~~~~l~~~~~ 431 (2096)
+-+...-.. + ...++....+.-+--||... +++.+..+|.++.+
T Consensus 156 k~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~n 202 (254)
T PF04826_consen 156 KVLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFEN 202 (254)
T ss_pred HHHHHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHH
Confidence 444332221 1 24455444444444444443 34555556655443
No 201
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=58.17 E-value=1.8e+02 Score=35.66 Aligned_cols=150 Identities=10% Similarity=0.137 Sum_probs=78.5
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHhccCChhHHHHHhHhh-cCHHHHHHHHHHHHccCC--Cch----hhhhhHHHHHH
Q 000134 1087 EDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSNKKS-GNWAEVFTSCEQALQMEP--TSV----QRHSDVLNCLL 1159 (2096)
Q Consensus 1087 ~~~~~L~~IYa~LdEpDgl~Gi~~~~~~~sl~~qil~~E~~-G~W~~A~~~YE~~Lq~~p--~~~----~~~~glL~CL~ 1159 (2096)
+.++.-.++|...+.++....+.... ...||.. |++++|..+|++++.... ++. .....+-.++.
T Consensus 95 ~~~~~A~~~y~~~G~~~~aA~~~~~l--------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 95 ECYEKAIEIYREAGRFSQAAKCLKEL--------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA 166 (282)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHH--------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHH--------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH
Confidence 34677778888888888887775432 3357777 999999999999976422 111 11233445566
Q ss_pred hccChHHHHHHhhhhhcc-----Chhhh-hhHhHHHHHHHHhcCChhhHHHhhcccCccCccccCCCCCcchhHH-HHHH
Q 000134 1160 NMCHLQAMVTHVDGLISR-----IPQYK-KTWCMQGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMD-VAKI 1232 (2096)
Q Consensus 1160 ~LGq~~~ll~~~~gl~~~-----~p~~~-~~~~~~~vEAAWrlg~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~-l~ka 1232 (2096)
.+|+|+..+...+.+... ...+. ++....++=+--..|+....++.++...... +.-..+-+.. +..+
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~-----~~F~~s~E~~~~~~l 241 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQD-----PSFASSREYKFLEDL 241 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTS-----TTSTTSHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCCCcHHHHHHHHH
Confidence 788998777666544321 11121 1111112223334556544444444322110 0001122232 4446
Q ss_pred HHHHHccCchhHHHHHH
Q 000134 1233 LQAMMKKDHFSVSDKIG 1249 (2096)
Q Consensus 1233 L~al~~~d~~~f~~~i~ 1249 (2096)
+.|+.++|.+.|.+.|.
T Consensus 242 ~~A~~~~D~e~f~~av~ 258 (282)
T PF14938_consen 242 LEAYEEGDVEAFTEAVA 258 (282)
T ss_dssp HHHHHTT-CCCHHHHCH
T ss_pred HHHHHhCCHHHHHHHHH
Confidence 77788899999998765
No 202
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=57.91 E-value=7.1 Score=32.32 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=17.6
Q ss_pred HHHhHhhcCHHHHHHHHHHHHc
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQ 1142 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq 1142 (2096)
...|++.|+|++|.++|+++|.
T Consensus 6 g~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 6 GRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 3458899999999999999653
No 203
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=57.85 E-value=29 Score=43.04 Aligned_cols=92 Identities=15% Similarity=0.231 Sum_probs=62.2
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHH----------------
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGL---------------- 1108 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi---------------- 1108 (2096)
.++.|=..-+-|.|||-|||.-++--.+..++-- +-..+-.|-++|++|.|.|-..=.
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~L------Elqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~ 200 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAML------ELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDW 200 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCcee------eeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCch
Confidence 4777777888999999999998875433222211 113456788899999888743322
Q ss_pred HHHhccCChhHHHHHhHhhcCHHHHHHHHHHHHc
Q 000134 1109 ARLHKSLSLQDELLSNKKSGNWAEVFTSCEQALQ 1142 (2096)
Q Consensus 1109 ~~~~~~~sl~~qil~~E~~G~W~~A~~~YE~~Lq 1142 (2096)
....+...+-+-...++..|+..+|++|+|.+.+
T Consensus 201 ~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~k 234 (518)
T KOG1941|consen 201 SLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMK 234 (518)
T ss_pred hHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 1111123344556678999999999999998865
No 204
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=57.85 E-value=1.3e+02 Score=32.44 Aligned_cols=88 Identities=14% Similarity=0.121 Sum_probs=62.9
Q ss_pred CCCHHHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhccCChhH
Q 000134 1040 AIPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQD 1119 (2096)
Q Consensus 1040 ~Ip~~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~~sl~~ 1119 (2096)
.+|++.+-.+-.+++...-.+.|+|..+.... . .......|.++|+..+..+.+.=+.......+++.
T Consensus 7 ~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~--~----------~~~~~~~li~ly~~~~~~~ll~~l~~~~~~yd~~~ 74 (140)
T smart00299 7 PIDVSEVVELFEKRNLLEELIPYLESALKLNS--E----------NPALQTKLIELYAKYDPQKEIERLDNKSNHYDIEK 74 (140)
T ss_pred cCCHHHHHHHHHhCCcHHHHHHHHHHHHccCc--c----------chhHHHHHHHHHHHHCHHHHHHHHHhccccCCHHH
Confidence 45666666666677888999999999876421 1 22467899999999877766654442334567777
Q ss_pred HHHHhHhhcCHHHHHHHHHH
Q 000134 1120 ELLSNKKSGNWAEVFTSCEQ 1139 (2096)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~ 1139 (2096)
-+..-+..|.|+.|.-.|.+
T Consensus 75 ~~~~c~~~~l~~~~~~l~~k 94 (140)
T smart00299 75 VGKLCEKAKLYEEAVELYKK 94 (140)
T ss_pred HHHHHHHcCcHHHHHHHHHh
Confidence 66667888999998888874
No 205
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=57.76 E-value=6.5e+02 Score=34.34 Aligned_cols=330 Identities=15% Similarity=0.149 Sum_probs=165.6
Q ss_pred HhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChhhH
Q 000134 1123 SNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLM 1202 (2096)
Q Consensus 1123 ~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd~l 1202 (2096)
..++.+-.+-|-+.|-.+||..|.+-..=.....--+..|.-+++....+......|...--|. +.+..-|..|+=..-
T Consensus 525 ~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwl-M~ake~w~agdv~~a 603 (913)
T KOG0495|consen 525 SCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWL-MYAKEKWKAGDVPAA 603 (913)
T ss_pred HHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHH-HHHHHHHhcCCcHHH
Confidence 3566777777888899999999876443211122224557777776666665566665444444 555666887776554
Q ss_pred HHhhccc-CccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHHHHhhhhh
Q 000134 1203 DEYLSGA-DEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLHLLQ 1281 (2096)
Q Consensus 1203 ~~~l~~~-~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~kLH~L~ 1281 (2096)
...+..+ +.+ + .+-+.-++..=+-..+.+. +.+|..+...-+.++++-.+-- ++.-.-.|.
T Consensus 604 r~il~~af~~~--------p-nseeiwlaavKle~en~e~-------eraR~llakar~~sgTeRv~mK--s~~~er~ld 665 (913)
T KOG0495|consen 604 RVILDQAFEAN--------P-NSEEIWLAAVKLEFENDEL-------ERARDLLAKARSISGTERVWMK--SANLERYLD 665 (913)
T ss_pred HHHHHHHHHhC--------C-CcHHHHHHHHHHhhccccH-------HHHHHHHHHHhccCCcchhhHH--HhHHHHHhh
Confidence 4444332 111 0 0122223322222222222 3344444443334444433322 222333445
Q ss_pred HHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHHHHHH
Q 000134 1282 ELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRL 1361 (2096)
Q Consensus 1282 ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~AklARK 1361 (2096)
..|+...++.+. -+.+ +++- +.|-- .+.-+...+.|=.-|-+.+.-...-....-.|+..|++=-|
T Consensus 666 ~~eeA~rllEe~---lk~f----p~f~---Kl~lm----lGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk 731 (913)
T KOG0495|consen 666 NVEEALRLLEEA---LKSF----PDFH---KLWLM----LGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK 731 (913)
T ss_pred hHHHHHHHHHHH---HHhC----CchH---HHHHH----HhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH
Confidence 566666665320 0111 1111 11211 11111222222222332222111112334579999999999
Q ss_pred cCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCccc
Q 000134 1362 AGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLS 1439 (2096)
Q Consensus 1362 ag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1439 (2096)
.|..-.|..-+.++.--+ ++...+|..+.-.--|..++|-..+.++++..|.. +..= .....+.|.....+.+
T Consensus 732 ~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~s----g~LW-aEaI~le~~~~rkTks 806 (913)
T KOG0495|consen 732 DGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSS----GLLW-AEAIWLEPRPQRKTKS 806 (913)
T ss_pred hcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc----chhH-HHHHHhccCcccchHH
Confidence 998888887777775433 34577888888888898888888888888765532 1000 0000111110000000
Q ss_pred -cc-ccchhchhHHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhh
Q 000134 1440 -NT-QTLNEKRDIAKTLLLYSR--WIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497 (2096)
Q Consensus 1440 -~~-q~~~~~~~~Aka~Lllak--Wl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~ 1497 (2096)
+. ..++.+ ..+++-.|+ |.+ .+.+...+-|..|++.+|....+|..+=+|+
T Consensus 807 ~DALkkce~d---phVllaia~lfw~e----~k~~kar~Wf~Ravk~d~d~GD~wa~fykfe 861 (913)
T KOG0495|consen 807 IDALKKCEHD---PHVLLAIAKLFWSE----KKIEKAREWFERAVKKDPDNGDAWAWFYKFE 861 (913)
T ss_pred HHHHHhccCC---chhHHHHHHHHHHH----HHHHHHHHHHHHHHccCCccchHHHHHHHHH
Confidence 00 001111 122333344 433 2356677889999999999999887765654
No 206
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=57.70 E-value=12 Score=42.72 Aligned_cols=73 Identities=21% Similarity=0.315 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHH-hccccccchhhHHHHHHHHhc--CCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHh
Q 000134 515 LQKQALKRIEILIEM-IGSHLTTYVPKILVLLMHAIN--KESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAAL 588 (2096)
Q Consensus 515 ~k~~~l~sl~~li~l-~g~~v~~~~pqI~a~L~~aL~--~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~l 588 (2096)
.+--|..++.+|++. .|..|-+++||++.=|+.||+ .++.-..++++-..+|..-+.++ ++|.|+.-|+...+
T Consensus 54 y~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG-~aLvPyyrqLLp~l 129 (183)
T PF10274_consen 54 YRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG-EALVPYYRQLLPVL 129 (183)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHHHHH
Confidence 445788999999999 444799999999999999997 56677777777777776654443 34555555444333
No 207
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=55.71 E-value=43 Score=32.14 Aligned_cols=70 Identities=20% Similarity=0.188 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHH
Q 000134 1383 VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIH 1462 (2096)
Q Consensus 1383 ~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~ 1462 (2096)
+....|..++..|+..+|+..++++++- . . +...+.+.+|.++..+|.-..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~-~-~---------------------------~~~~~~~~~a~~~~~lg~~~~ 57 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDI-E-E---------------------------QLGDDHPDTANTLNNLGECYY 57 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH-H-H---------------------------HTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-H-H---------------------------HHCCCCHHHHHHHHHHHHHHH
Confidence 3445688899999999999999998762 0 0 001133466888888888777
Q ss_pred HhCCCCHHHHHHHHHHHHHhc
Q 000134 1463 YTGQKQKEDVITLYSRVRELQ 1483 (2096)
Q Consensus 1463 ~~~~~~~~~i~~~Y~~a~~l~ 1483 (2096)
..|+ .++.++.|++|.++.
T Consensus 58 ~~g~--~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 58 RLGD--YEEALEYYQKALDIF 76 (78)
T ss_dssp HTTH--HHHHHHHHHHHHHHH
T ss_pred HcCC--HHHHHHHHHHHHhhh
Confidence 7775 788888898888774
No 208
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=55.67 E-value=28 Score=45.04 Aligned_cols=53 Identities=15% Similarity=0.134 Sum_probs=43.8
Q ss_pred HHhHhhcCHHHHHHHHHHHHccCCCchhh---hhhHHHHHHhccChHHHHHHhhhh
Q 000134 1122 LSNKKSGNWAEVFTSCEQALQMEPTSVQR---HSDVLNCLLNMCHLQAMVTHVDGL 1174 (2096)
Q Consensus 1122 l~~E~~G~W~~A~~~YE~~Lq~~p~~~~~---~~glL~CL~~LGq~~~ll~~~~gl 1174 (2096)
..|.+.|++++|+++|+++|+..|++.+. +..+=-|+..+|+++..+.+.+..
T Consensus 83 ~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 83 LSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35678899999999999999999998754 667778899999999877766543
No 209
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=55.58 E-value=1.1e+02 Score=34.29 Aligned_cols=65 Identities=17% Similarity=0.113 Sum_probs=54.1
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC-----ChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1345 GAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA-----PNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1345 ~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~-----~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
+...+..+...+......|.++.|.....+|....+ +.+....|.++...|+..+|+..+++++.
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344566788999999999999999999998876532 24677889999999999999999999876
No 210
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=55.30 E-value=25 Score=31.77 Aligned_cols=53 Identities=17% Similarity=0.162 Sum_probs=38.0
Q ss_pred chhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhH
Q 000134 163 EVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGY 216 (2096)
Q Consensus 163 ~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~ 216 (2096)
+|+-+...+|.++..+.... ...-..+-+.+|..+|.|++..||.++|.++..
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~-~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPEL-LQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHH-HHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhHhcccHHH-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 46777888888866555433 222334556777788899999999999998864
No 211
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=55.10 E-value=37 Score=36.29 Aligned_cols=75 Identities=12% Similarity=0.144 Sum_probs=49.2
Q ss_pred CCChhhHHHHHHHhhcccCccchhhH-HHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhh
Q 000134 142 HSDFSFLLNIYFEFLYDESSEEVQLS-CVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFL 218 (2096)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~~~~~v~~~-~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~ 218 (2096)
+-||--++. +.++|-+ +.++.++| +.-.|..+.+|++....+-....--..|+.||.|+|..||.-|=.+++.+|
T Consensus 39 ~~~~~llk~-L~~lL~~-s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 39 ENNFELLKK-LIKLLDK-SDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp SGGGHHHHH-HHHHH-S-HHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HcccHHHHH-HHHHHcc-CCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 334555555 6677733 33555555 445789999998854222222334458999999999999999999999987
No 212
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=54.18 E-value=3.1e+02 Score=35.76 Aligned_cols=180 Identities=16% Similarity=0.263 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhc-CC----ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQAS-GA----PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~-~~----~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~ 1423 (2096)
.+.|+++||.--|+|....|...-..|... ++ .-.++.+|++-=.+.++.+|--+.+-+++++|.
T Consensus 207 v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk---------- 276 (677)
T KOG1915|consen 207 VSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPK---------- 276 (677)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----------
Confidence 578999999999999999998888877653 33 236778888777777788888777777765431
Q ss_pred ccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHh---CC-CCHHHHH-----HHHHHHHHhccchHHHHHHHH
Q 000134 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYT---GQ-KQKEDVI-----TLYSRVRELQPMWEKGYFYMA 1494 (2096)
Q Consensus 1424 ~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~---~~-~~~~~i~-----~~Y~~a~~l~~~weK~~~~la 1494 (2096)
.++..|+.++.+-- |. ...++++ -+|.+-+.-+|.-..+||.+=
T Consensus 277 ---------------------------~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdyl 329 (677)
T KOG1915|consen 277 ---------------------------GRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYL 329 (677)
T ss_pred ---------------------------ccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHH
Confidence 33556666666432 22 2234444 356677777777777776442
Q ss_pred hhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcchh-hhHHHHHHhhhhcCccccccCCCChhhhH
Q 000134 1495 KYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLF-QALPRLLTLWFDFGSICQRAGSSSNKDLK 1573 (2096)
Q Consensus 1495 ~y~d~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~~~-q~lpRlLtLWl~~g~~~~~~~~~~~~~~~ 1573 (2096)
+. . ++ .| ....+.+-|-+|+...+...- -.--|-+-||..|+-...- +.+
T Consensus 330 rL----~-e~---------~g--------~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEl-------e~e 380 (677)
T KOG1915|consen 330 RL----E-ES---------VG--------DKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEEL-------EAE 380 (677)
T ss_pred HH----H-Hh---------cC--------CHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHH-------Hhh
Confidence 21 1 10 01 112467778888876554211 1345888999998742100 001
Q ss_pred hHHHHHHHHHHhhcCCCCCchh
Q 000134 1574 NVNGKVMSIMRGCLKDLPAYQW 1595 (2096)
Q Consensus 1574 ~~~~~v~~~~~~~~~~iP~~~w 1595 (2096)
+ ...-.++.+.+++-||.-+|
T Consensus 381 d-~ertr~vyq~~l~lIPHkkF 401 (677)
T KOG1915|consen 381 D-VERTRQVYQACLDLIPHKKF 401 (677)
T ss_pred h-HHHHHHHHHHHHhhcCcccc
Confidence 1 12234555666776665544
No 213
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=53.91 E-value=31 Score=37.51 Aligned_cols=53 Identities=11% Similarity=0.163 Sum_probs=43.5
Q ss_pred HHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhh
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDG 1173 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~g 1173 (2096)
+-.+...|+|++|..+++.++..+|.+-..+..+|+|+...|++...+.+.+.
T Consensus 69 ~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~ 121 (146)
T PF03704_consen 69 AEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYER 121 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 33467899999999999999999999999999999999999999877665554
No 214
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=53.87 E-value=96 Score=34.65 Aligned_cols=60 Identities=13% Similarity=0.071 Sum_probs=40.7
Q ss_pred HHHhHhhcCHHHHHHHHHHHHccCCCch---hhhhhHHHHHHhccChHHHHHHhhhhhccChh
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSV---QRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ 1180 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~---~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~ 1180 (2096)
...+...|++++|..+|+.++...|++. ..+.++=.|+..+|+++....+.+......|.
T Consensus 42 g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~ 104 (168)
T CHL00033 42 GMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF 104 (168)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 3445677888899999888887766532 24455556777888888777766655444443
No 215
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.33 E-value=1.4e+02 Score=40.20 Aligned_cols=125 Identities=13% Similarity=0.043 Sum_probs=86.8
Q ss_pred ccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHh---hcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchh
Q 000134 161 SEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLL---LNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSN 237 (2096)
Q Consensus 161 ~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~---~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (2096)
-.||+.|.|.++.++.-... +.-++|++||+ +|....||.-+=-++..+-.+ ...
T Consensus 386 f~EVR~AAV~Sl~~La~ssP--------~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~--------------l~i 443 (823)
T KOG2259|consen 386 FYEVRRAAVASLCSLATSSP--------GFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVH--------------LAI 443 (823)
T ss_pred HHHHHHHHHHHHHHHHcCCC--------CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH--------------hee
Confidence 35799999999998776544 33567999987 999999999998888875411 234
Q ss_pred hHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhh
Q 000134 238 ELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFH 312 (2096)
Q Consensus 238 ~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~ 312 (2096)
++..++.+...+.+.. +.|.|.+.+-++.. .-..-|.+..++..|+..|+.. |.=|---+.=+-.+.+.|
T Consensus 444 ~eeql~~il~~L~D~s-~dvRe~l~elL~~~---~~~d~~~i~m~v~~lL~~L~ky-PqDrd~i~~cm~~iGqnH 513 (823)
T KOG2259|consen 444 REEQLRQILESLEDRS-VDVREALRELLKNA---RVSDLECIDMCVAHLLKNLGKY-PQDRDEILRCMGRIGQNH 513 (823)
T ss_pred cHHHHHHHHHHHHhcC-HHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHHhhhC-CCCcHHHHHHHHHHhccC
Confidence 4556666666665554 45999999888873 4457788888888899888876 433333333334444444
No 216
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=53.21 E-value=2.1e+02 Score=40.01 Aligned_cols=252 Identities=17% Similarity=0.091 Sum_probs=144.6
Q ss_pred hhhcccchhhhhhhhhhchhhhhhhcC----cc-chHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCcccccccccc
Q 000134 10 DLALRDEFDEVRAEAVISLPVIVMWSG----LG-VLTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDK 84 (2096)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (2096)
-.-+.|+-+|+|.+++.-..-+-.+-+ +. ..+..+..+.-+..+...-|+...+.....++=+.|.-+.+...-
T Consensus 361 ~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~ll- 439 (759)
T KOG0211|consen 361 SNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELL- 439 (759)
T ss_pred HHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccC-
Confidence 344778889999999988888888877 22 236778899999999999999999988777766666222222111
Q ss_pred cccccccccccccccccHHhhh---hcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhcccCc
Q 000134 85 NACKLLLNVEDDILSQTVDYLL---ENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESS 161 (2096)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~---~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (2096)
.+|+.....+.+.-..++. .-..|--|-.|+ ....+.. -+..-.+--|. +
T Consensus 440 ---p~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~-------------------~~~s~sl----Lp~i~el~~d~-~ 492 (759)
T KOG0211|consen 440 ---PLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGI-------------------STVSNSL----LPAIVELAEDL-L 492 (759)
T ss_pred ---hhhhhhcchhhHHHHHhhHHHHHHHHhccCcccc-------------------hhhhhhh----hhhhhhhccch-h
Confidence 1222212222222222222 333333333332 1111111 11122222222 7
Q ss_pred cchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHH
Q 000134 162 EEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKL 241 (2096)
Q Consensus 162 ~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (2096)
.+|+-++++.++..+.-......-..+.+- |..++ .|...++|.|+.+.++.++ ..|+ +.+.....+
T Consensus 493 wRvr~ail~~ip~la~q~~~~~~~~~~~~l--~~~~l-~d~v~~Ir~~aa~~l~~l~------~~~G----~~w~~~~~i 559 (759)
T KOG0211|consen 493 WRVRLAILEYIPQLALQLGVEFFDEKLAEL--LRTWL-PDHVYSIREAAARNLPALV------ETFG----SEWARLEEI 559 (759)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhhHHHHHH--HHhhh-hhhHHHHHHHHHHHhHHHH------HHhC----cchhHHHhh
Confidence 889999999999988776522221222223 65555 8999999999999999965 3343 112222222
Q ss_pred HHHHHHHhhhcC--ChhHHHHHHHHHHHHHhhhcccchhHHHHHHH-HHHhhCCCCcchHHHHHHHHHHH
Q 000134 242 LDVIKLAFTAAD--DPLILETLLESTAELMMAVDVHSQHFLFLLIL-LVEQLDNPHVTVRMNASRLIRKS 308 (2096)
Q Consensus 242 ~~~~~~~~~~~~--d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~-Li~~L~~~n~~v~~~A~~~i~~l 308 (2096)
. +-+.... +.-..-|++-++..+ +..-+.|++.--|.- +.+....+.+.||-.|-..+..+
T Consensus 560 ~----k~L~~~~q~~y~~R~t~l~si~~l--a~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i 623 (759)
T KOG0211|consen 560 P----KLLAMDLQDNYLVRMTTLFSIHEL--AEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKI 623 (759)
T ss_pred H----HHHHHhcCcccchhhHHHHHHHHH--HHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHH
Confidence 2 2222222 355667777777766 333355554433333 44455778889998887776665
No 217
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=51.51 E-value=90 Score=39.36 Aligned_cols=68 Identities=19% Similarity=0.292 Sum_probs=53.9
Q ss_pred HHHHhhccc-CccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcc--cHHHHHHHHHHHhHhh
Q 000134 151 IYFEFLYDE-SSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNK--RKAIRDAFCTQIGYFL 218 (2096)
Q Consensus 151 ~~~~~l~~~-~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~--~r~vR~a~~~~~~~~~ 218 (2096)
++..-.|.. .+++--.++++.|.+++.++...........|-+.+-+++.++ ...||.++...+...+
T Consensus 164 ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~ 234 (339)
T PF12074_consen 164 LLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLY 234 (339)
T ss_pred hcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 344445555 8888999999999999999885533233467889889999999 9999999999998765
No 218
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=51.38 E-value=3e+02 Score=36.22 Aligned_cols=212 Identities=14% Similarity=0.174 Sum_probs=106.5
Q ss_pred CChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHh----c---CCCcchhh
Q 000134 486 EDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAI----N---KESLQCEG 558 (2096)
Q Consensus 486 ~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL----~---~~~L~~~~ 558 (2096)
+++..|+++=+-++.+-++..- + .+-...++++.+++-+++..+.++.+.|+..|...+ . +|.+-...
T Consensus 18 ~di~p~~~~ll~~Lf~~i~~~~--s---~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHyl 92 (435)
T PF03378_consen 18 ADIQPFAQQLLQNLFALIEKPG--S---AENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYL 92 (435)
T ss_dssp GGTTCCHHHHHHHHHHHHHTT---S---TC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHhcCC--C---ccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhH
Confidence 3445555554555555454211 1 122467888888888888877766666555555444 3 45688889
Q ss_pred hHHHHHHHHHhccCCCcchhhHHHHHHHHhhhccccC-CCCchhhHHHHHHHHHHHHHHhH-HHHHhhcccC-CC-----
Q 000134 559 LSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERD-KDNPSVLLNKVVKILEDLVLKNR-AILKQHIHEF-PL----- 630 (2096)
Q Consensus 559 l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~-~~~~~~~~~~~~~il~~Li~~n~-~~L~~~i~~l-p~----- 630 (2096)
|++-..+|+...+..|+.+..+-+.+|..+..-++.. .|+ .--+..||.+|+.-+. ..+.+.+..| |+
T Consensus 93 FEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF----~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~ 168 (435)
T PF03378_consen 93 FESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEF----IPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPA 168 (435)
T ss_dssp HHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTT----HHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGG
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcc
Confidence 9999999998654344433333343443333333211 232 3557889988877776 3443333333 11
Q ss_pred ----CCChhhhHH-HHHHHHHhcCCC----CHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCC
Q 000134 631 ----LPSIAALTE-VNKAIQEARGPM----TLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSD 701 (2096)
Q Consensus 631 ----Lp~ip~l~~-v~~~l~~~r~~~----~l~~~l~~~~~~l~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~ 701 (2096)
-..+|.+.+ +.+.+++..... .+..-|..|-+-+++... -.+|+.=|...+..-..+.-
T Consensus 169 lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~--D~~gF~LL~~iv~~~p~~~l---------- 236 (435)
T PF03378_consen 169 LWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAN--DHYGFDLLESIVENLPPEAL---------- 236 (435)
T ss_dssp GGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTC--HHHHHHHHHHHHHHS-HHHH----------
T ss_pred hhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCc--chHHHHHHHHHHHHCCHHHH----------
Confidence 234777765 344444433221 233344455455554432 23454434433333221100
Q ss_pred chhHHHHHHHHHHHhhh
Q 000134 702 LDVLSTLISSLLRGCAE 718 (2096)
Q Consensus 702 ~~vi~~Lv~sLL~~c~~ 718 (2096)
.+.+.+++..|+.-.+.
T Consensus 237 ~~yl~~I~~lll~RLq~ 253 (435)
T PF03378_consen 237 EPYLKQIFTLLLTRLQS 253 (435)
T ss_dssp GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 14666777777766554
No 219
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=51.35 E-value=53 Score=39.04 Aligned_cols=81 Identities=19% Similarity=0.279 Sum_probs=58.5
Q ss_pred cCCChHHHHHHHHHhccCChhHHHHHhHhhcCHHHHHHHHHHHH--------ccCCCchhh----------hhhHHHHHH
Q 000134 1098 FLDEPDGLSGLARLHKSLSLQDELLSNKKSGNWAEVFTSCEQAL--------QMEPTSVQR----------HSDVLNCLL 1159 (2096)
Q Consensus 1098 ~LdEpDgl~Gi~~~~~~~sl~~qil~~E~~G~W~~A~~~YE~~L--------q~~p~~~~~----------~~glL~CL~ 1159 (2096)
+|+|-|-+..+..++ +.--..-+.|++.+|-++|..|+ .+.|.+.+. .+++-.|++
T Consensus 168 qlsddeKmkav~~l~------q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L 241 (329)
T KOG0545|consen 168 QLSDDEKMKAVPVLH------QEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLL 241 (329)
T ss_pred cCCchHhhhhhHHHH------HhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHh
Confidence 366666666655543 34445668899999999988773 356655432 357789999
Q ss_pred hccChHHHHHHhhhhhccChhhhhh
Q 000134 1160 NMCHLQAMVTHVDGLISRIPQYKKT 1184 (2096)
Q Consensus 1160 ~LGq~~~ll~~~~gl~~~~p~~~~~ 1184 (2096)
.-|.|..++.|...++...|...+.
T Consensus 242 ~~~e~yevleh~seiL~~~~~nvKA 266 (329)
T KOG0545|consen 242 KKEEYYEVLEHCSEILRHHPGNVKA 266 (329)
T ss_pred hHHHHHHHHHHHHHHHhcCCchHHH
Confidence 9999999999999998888865543
No 220
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=51.10 E-value=1.5e+02 Score=39.01 Aligned_cols=141 Identities=17% Similarity=0.247 Sum_probs=86.9
Q ss_pred HHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhccCChhHHHHHhHh
Q 000134 1047 ARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSNKK 1126 (2096)
Q Consensus 1047 A~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~~sl~~qil~~E~ 1126 (2096)
+.+=.+=+.|.-|+.|++.-..+.+ +| +.+..|++.=..+.+-++..=+-.- .......+.-++-+
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~R---t~----------~~ls~lk~~Ek~~k~~e~~a~~~pe-~A~e~r~kGne~Fk 370 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHR---TP----------DLLSKLKEAEKALKEAERKAYINPE-KAEEEREKGNEAFK 370 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhc---CH----------HHHHHHHHHHHHHHHHHHHHhhChh-HHHHHHHHHHHHHh
Confidence 3344444888899999988654432 11 1222333222222222111111000 01112234667889
Q ss_pred hcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChhhH
Q 000134 1127 SGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLM 1202 (2096)
Q Consensus 1127 ~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd~l 1202 (2096)
.|+|..|...|.+++...|++.....+.=-|+..||++...+.-++.-..-.|+|.+.+.. ...|--.+-+||.-
T Consensus 371 ~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~R-Kg~al~~mk~ydkA 445 (539)
T KOG0548|consen 371 KGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLR-KGAALRAMKEYDKA 445 (539)
T ss_pred ccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHH-HHHHHHHHHHHHHH
Confidence 9999999999999999999999999899999999999998877776655567777654432 23444445566554
No 221
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=50.14 E-value=15 Score=30.25 Aligned_cols=32 Identities=16% Similarity=0.346 Sum_probs=27.9
Q ss_pred HHHHHHccCCCchhhhhhHHHHHHhccChHHH
Q 000134 1136 SCEQALQMEPTSVQRHSDVLNCLLNMCHLQAM 1167 (2096)
Q Consensus 1136 ~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~l 1167 (2096)
||+++++..|++.+....+=.++.+.|+++..
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 58999999999999888887888899998864
No 222
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=50.11 E-value=6.3e+02 Score=31.89 Aligned_cols=69 Identities=14% Similarity=0.131 Sum_probs=51.6
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC--------------hHHHHHHHHHHHcCCchHHHHHHHHHhhc
Q 000134 1345 GAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAP--------------NVHMEKAKLLWSTRRSDGAIAELQQNLLN 1410 (2096)
Q Consensus 1345 ~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~~--------------~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~ 1410 (2096)
..+..+...++++|--+-|....+.+.|..+..+++. .-.+|.|+-.-.+++..+++..=+..+++
T Consensus 219 s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ 298 (504)
T KOG0624|consen 219 SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN 298 (504)
T ss_pred cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 3344567788888888888888888888888776532 23577888888888888888888888776
Q ss_pred CCc
Q 000134 1411 KPV 1413 (2096)
Q Consensus 1411 ~~~ 1413 (2096)
.|.
T Consensus 299 ep~ 301 (504)
T KOG0624|consen 299 EPE 301 (504)
T ss_pred CCc
Confidence 654
No 223
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=49.46 E-value=2.2e+02 Score=39.40 Aligned_cols=155 Identities=21% Similarity=0.249 Sum_probs=94.8
Q ss_pred ChHHHHHHHHHHHHHHHHh-----cc-ccccchhhHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCCcchhhHHH--H
Q 000134 512 DLSLQKQALKRIEILIEMI-----GS-HLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVIS--Q 583 (2096)
Q Consensus 512 ~~~~k~~~l~sl~~li~l~-----g~-~v~~~~pqI~a~L~~aL~~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~--~ 583 (2096)
|...+-+++.-|.+|+-|+ ++ .|.+++|-+.+.|++-.+ .++...|++|.--++..| |.+.+.++. .
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n-~DIMl~AcRaltyl~evl----P~S~a~vV~~~a 255 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHN-FDIMLLACRALTYLCEVL----PRSSAIVVDEHA 255 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHhhc----cchhheeecccc
Confidence 6667788888888888775 33 577889999999987763 678888988877777765 555544333 2
Q ss_pred H---HHHh--hhccccCCCCchhhHHHHHHHHHHHHHHhH-HHH-----HhhcccCCCCCChhhhHHHHHHH---HHhcC
Q 000134 584 V---FAAL--IPFLERDKDNPSVLLNKVVKILEDLVLKNR-AIL-----KQHIHEFPLLPSIAALTEVNKAI---QEARG 649 (2096)
Q Consensus 584 i---~~~l--ip~~~~~~~~~~~~~~~~~~il~~Li~~n~-~~L-----~~~i~~lp~Lp~ip~l~~v~~~l---~~~r~ 649 (2096)
| ...| |.|++ ..+|+..-|++|=.+|. +.| ..++..|.||.-.-.=..+.-+. +..+.
T Consensus 256 IPvl~~kL~~IeyiD--------vAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~s 327 (1051)
T KOG0168|consen 256 IPVLLEKLLTIEYID--------VAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRS 327 (1051)
T ss_pred hHHHHHhhhhhhhhH--------HHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 2 2222 34444 46889999999988874 333 34455555554321111111111 12222
Q ss_pred --CCCHHHHHHHHHhhccCCChhHHHHHHHHH
Q 000134 650 --PMTLKDQLLAAVDGLNHENLNVRYMVVCEL 679 (2096)
Q Consensus 650 --~~~l~~~l~~~~~~l~~en~~Vr~~aL~eL 679 (2096)
.-.+.|.+..+...++++...+++.+.--+
T Consensus 328 d~f~~v~ealPlL~~lLs~~D~k~ies~~ic~ 359 (1051)
T KOG0168|consen 328 DEFHFVMEALPLLTPLLSYQDKKPIESVCICL 359 (1051)
T ss_pred ccchHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 123567888888888887766655544333
No 224
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=49.09 E-value=26 Score=28.05 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=20.5
Q ss_pred HHHHHhhcccHHHHHHHHHHHhHhhh
Q 000134 194 CIEFLLLNKRKAIRDAFCTQIGYFLQ 219 (2096)
Q Consensus 194 ~~~~~~~~~~r~vR~a~~~~~~~~~~ 219 (2096)
++-.++.|++..||.+++..+..+.+
T Consensus 4 ~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 4 ILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 34456799999999999999998763
No 225
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=48.85 E-value=9.6e+02 Score=33.64 Aligned_cols=205 Identities=19% Similarity=0.300 Sum_probs=104.9
Q ss_pred HHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccchhhhh-hhhhhHHHHHHhcCc-hHHHHHHHHHHhCCChH
Q 000134 282 LLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLI-CNELFDYLSVRLASR-PIMVREFAEAAFGVETE 359 (2096)
Q Consensus 282 ~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~-~~~l~~~~~~~l~~r-p~~~~~~~e~llg~~~~ 359 (2096)
++-.||..|++.|.-+...|..-|.+++-+. ..+..| ...+-+.+++-+.+. +.+.+.-...|+.+|-+
T Consensus 291 iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~---------ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd 361 (708)
T PF05804_consen 291 IVSLLVKCLDRENEELLILAVTFLKKLSIFK---------ENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFD 361 (708)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH---------HHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcC
Confidence 3456889999999999999999999985442 222222 222345566666654 33444434446666653
Q ss_pred HHHH-h-hcccccchhhhccccChh---HHHHHHHHHHHcCCCchhHHh--hhHHHHHHHHhccccHHHHHHHHHHHhhh
Q 000134 360 ELVK-K-MIPAVLPKLVVSQQDNDQ---AVNIINELAKCLNTDMVPLIV--TWIPKVLAFALHQADERRLLSALEFYCIQ 432 (2096)
Q Consensus 360 ~fL~-~-~~~~~LP~LVl~~~~~~~---~~~~i~~ia~~~~~~~~~l~~--~~~~~Ila~ll~~~~~~~~~~~l~~~~~~ 432 (2096)
.=++ . ...-.+|+||-.-+.+.. +..++..|+. ...-+.++. +.+|.+.-.++...+++.-.+.+..+.+.
T Consensus 362 ~~~R~~mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~--dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNL 439 (708)
T PF05804_consen 362 PELRSQMVSLGLIPKLVELLKDPNFREVALKILYNLSM--DDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINL 439 (708)
T ss_pred HHHHHHHHHCCCcHHHHHHhCCCchHHHHHHHHHHhcc--CHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHH
Confidence 3223 2 333477999875433322 3344444432 223455553 46777766666544433222233333222
Q ss_pred c-----------CCChHHHHHHhh----HHHHHHHHHhhcCCCchhHhhhhcchhHHHHHHhhhccCCCChhhhhHHHHH
Q 000134 433 T-----------GSDNQEIFAAAL----PALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFV 497 (2096)
Q Consensus 433 ~-----------~~~~~~~~~~~~----~~~l~eLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~L 497 (2096)
+ +.-++.++..++ |.++ .++..+..++... + +...+.+..+++.++..+ .+-+.=+.|
T Consensus 440 a~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLl-KlIRNiS~h~~~~-k---~~f~~~i~~L~~~v~~~~--~ee~~vE~L 512 (708)
T PF05804_consen 440 ALNKRNAQLMCEGNGLQSLMKRALKTRDPLLL-KLIRNISQHDGPL-K---ELFVDFIGDLAKIVSSGD--SEEFVVECL 512 (708)
T ss_pred hcCHHHHHHHHhcCcHHHHHHHHHhcccHHHH-HHHHHHHhcCchH-H---HHHHHHHHHHHHHhhcCC--cHHHHHHHH
Confidence 1 122333333222 2223 4555565555221 1 123344444455544433 344566788
Q ss_pred HHHHHhh
Q 000134 498 GLLNSID 504 (2096)
Q Consensus 498 Gil~~~~ 504 (2096)
|+++.+.
T Consensus 513 GiLaNL~ 519 (708)
T PF05804_consen 513 GILANLT 519 (708)
T ss_pred HHHHhcc
Confidence 9988876
No 226
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=48.25 E-value=2e+02 Score=41.23 Aligned_cols=160 Identities=19% Similarity=0.245 Sum_probs=100.7
Q ss_pred HHHHHHHhhcccCccchhhHHHHHHHHHHccCCchhhhh--hhhHHH-HHHHHHhhc-ccHHHHHHHHHHHhHhh--hhh
Q 000134 148 LLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLK--TRSEWI-KCIEFLLLN-KRKAIRDAFCTQIGYFL--QDT 221 (2096)
Q Consensus 148 ~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~--~~~~w~-~~~~~~~~~-~~r~vR~a~~~~~~~~~--~~~ 221 (2096)
.-+ ||=.|+..+...||.+.+..|-++|.--..-...+ -+-+++ =.|..|+.| ..-.||.||++.|+.+- -..
T Consensus 463 VlP-Y~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r 541 (1431)
T KOG1240|consen 463 VLP-YFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR 541 (1431)
T ss_pred hHH-HHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH
Confidence 344 67778888999999999999999987654211111 233444 477778888 88899999999887752 000
Q ss_pred hhhhh--------ccCcc---c-ccchh--hHHHHHHHH---HHhhhcCChhHHHHHHHHHHHHHh---hhcccchhHHH
Q 000134 222 VLSSL--------FLDEN---A-SSRSN--ELKLLDVIK---LAFTAADDPLILETLLESTAELMM---AVDVHSQHFLF 281 (2096)
Q Consensus 222 ~~~~~--------~~~~~---~-~~~~~--~~~~~~~~~---~~~~~~~d~~i~eTll~~~~~i~~---~~~~~~e~~~~ 281 (2096)
-+... +.+.+ . ....+ .......+. ..|....+|-|+.|||++++.+|. ..- ..+ +
T Consensus 542 Fle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k-sND---~ 617 (1431)
T KOG1240|consen 542 FLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEK-SND---V 617 (1431)
T ss_pred HHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc-ccc---c
Confidence 01111 11111 1 01111 122333333 334445667799999999999873 221 122 2
Q ss_pred HHHHHHHhhCCCCcchHHHHHHHHHHHhhhh
Q 000134 282 LLILLVEQLDNPHVTVRMNASRLIRKSCFFH 312 (2096)
Q Consensus 282 ~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~ 312 (2096)
.|=.|+.||--....+|+.=|.-|.-+|.+-
T Consensus 618 iLshLiTfLNDkDw~LR~aFfdsI~gvsi~V 648 (1431)
T KOG1240|consen 618 ILSHLITFLNDKDWRLRGAFFDSIVGVSIFV 648 (1431)
T ss_pred hHHHHHHHhcCccHHHHHHHHhhccceEEEE
Confidence 3556899999999999999999998876664
No 227
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=47.89 E-value=1.1e+03 Score=33.89 Aligned_cols=225 Identities=12% Similarity=0.072 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChhhHHHhhccc
Q 000134 1130 WAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMDEYLSGA 1209 (2096)
Q Consensus 1130 W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd~l~~~l~~~ 1209 (2096)
.++|..++...++..|+|+-.-+|.-+=+.+-|.|-..+.+..+.+..+|....+.-.-.--|-|.+|+=+....-...+
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ra 225 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERA 225 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHH
Confidence 67888888888888888888888877767777888888888777666666544432211124556665543321111100
Q ss_pred CccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHHHHhhhhhHHHHHHHh
Q 000134 1210 DEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLHLLQELEDFHAI 1289 (2096)
Q Consensus 1210 ~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~kLH~L~ELee~~~~ 1289 (2096)
-+ .++ ..-..-+|-+...+..+|. +||..+...+.+ +...
T Consensus 226 lq-------Ldp-~~v~alv~L~~~~l~~~d~-----------------------~s~~~~~~ll~~---------ay~~ 265 (1018)
T KOG2002|consen 226 LQ-------LDP-TCVSALVALGEVDLNFNDS-----------------------DSYKKGVQLLQR---------AYKE 265 (1018)
T ss_pred Hh-------cCh-hhHHHHHHHHHHHHHccch-----------------------HHHHHHHHHHHH---------HHhh
Confidence 00 001 1112222222222222222 233322111110 1111
Q ss_pred hhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHcCChHHHH
Q 000134 1290 LVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETAT 1369 (2096)
Q Consensus 1290 ~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~AklARKag~~~~A~ 1369 (2096)
- ..++. +...+.+-+-...+....|+ |++........ ....++...+.||-=-..|.++.|+
T Consensus 266 n-----------~~nP~---~l~~LAn~fyfK~dy~~v~~--la~~ai~~t~~--~~~~aes~Y~~gRs~Ha~Gd~ekA~ 327 (1018)
T KOG2002|consen 266 N-----------NENPV---ALNHLANHFYFKKDYERVWH--LAEHAIKNTEN--KSIKAESFYQLGRSYHAQGDFEKAF 327 (1018)
T ss_pred c-----------CCCcH---HHHHHHHHHhhcccHHHHHH--HHHHHHHhhhh--hHHHHHHHHHHHHHHHhhccHHHHH
Confidence 0 01111 33334444445555555553 34444333322 2345566777777777889999999
Q ss_pred HHHHHHhhcCCCh---HHHHHHHHHHHcCCchHHHHHHHHHhhcCC
Q 000134 1370 RAILEAQASGAPN---VHMEKAKLLWSTRRSDGAIAELQQNLLNKP 1412 (2096)
Q Consensus 1370 ~all~a~~~~~~~---~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~ 1412 (2096)
..-+++.+..+.+ ..+--.+..-..|+-..|+.+.+..++..|
T Consensus 328 ~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p 373 (1018)
T KOG2002|consen 328 KYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP 373 (1018)
T ss_pred HHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc
Confidence 9999887765443 233446677788999999999999887544
No 228
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=47.59 E-value=5.1e+02 Score=31.78 Aligned_cols=110 Identities=20% Similarity=0.150 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CCC---hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccc
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQAS----GAP---NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGST 1419 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~----~~~---~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~ 1419 (2096)
+.+...-+-|..-|.+|.++.|-.+..+|... +.+ .-.++.|=..+.+++..+|+..+++++.-..
T Consensus 33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~------- 105 (282)
T PF14938_consen 33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYR------- 105 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH-------
Confidence 33555666667777777777777776666432 222 1223334445566699999999999875210
Q ss_pred ccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchH
Q 000134 1420 AISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWE 1487 (2096)
Q Consensus 1420 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~we 1487 (2096)
........|+++..+|+.+.... .+.+..++.|++|.++...-+
T Consensus 106 -----------------------~~G~~~~aA~~~~~lA~~ye~~~-~d~e~Ai~~Y~~A~~~y~~e~ 149 (282)
T PF14938_consen 106 -----------------------EAGRFSQAAKCLKELAEIYEEQL-GDYEKAIEYYQKAAELYEQEG 149 (282)
T ss_dssp -----------------------HCT-HHHHHHHHHHHHHHHCCTT---HHHHHHHHHHHHHHHHHTT
T ss_pred -----------------------hcCcHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHCC
Confidence 00012356889999999876551 258999999999999876544
No 229
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=47.53 E-value=41 Score=33.01 Aligned_cols=59 Identities=20% Similarity=0.263 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhc--CCChHHHHHHHHHHHcCCchHHHHHHHHH
Q 000134 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQAS--GAPNVHMEKAKLLWSTRRSDGAIAELQQN 1407 (2096)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~all~a~~~--~~~~~~iE~AKLLW~~g~~~~Ai~~L~~~ 1407 (2096)
....|+..|...-+.|.++.|...+.+ ... ..+....-.|+.+.+.|+.++|+..|+++
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 456899999999999999999999976 222 23456666799999999999999999863
No 230
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=47.46 E-value=1.4e+02 Score=40.48 Aligned_cols=200 Identities=14% Similarity=0.171 Sum_probs=102.3
Q ss_pred CChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHhcCCCcchhhhHHHHHH
Q 000134 486 EDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHFF 565 (2096)
Q Consensus 486 ~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL~~~~L~~~~l~~W~~f 565 (2096)
...+.|++++|+-++.++..- .-++.++|.+-.+.|-.-++..-.- ..+-++.-.|.++++..+-....+---..+
T Consensus 243 ~~~~gff~n~fvd~~~fLeel--~lks~~eK~~Ff~~L~~~l~~~pe~--i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~ 318 (690)
T KOG1243|consen 243 RLLGGFFRNDFVDTLLFLEEL--RLKSVEEKQKFFSGLIDRLDNFPEE--IIASKVLPILLAALEFGDAASDFLTPLFKL 318 (690)
T ss_pred HhccccccchHHHHHHHHHhc--ccCcHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhhccccchhhhhHHHHh
Confidence 456899999999999998753 3356777777666666644443321 122333334555554433111222222223
Q ss_pred HHHhccCCCcchhhHHHHHHHHhhhccccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCChhhhHHHHHHHH
Q 000134 566 IEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQ 645 (2096)
Q Consensus 566 v~~L~~~~~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~l~~v~~~l~ 645 (2096)
.+-|+. ++ +-..++..+++++...+ +..=..+|+|+ +.+-+++ +
T Consensus 319 ~k~ld~---~e---yq~~i~p~l~kLF~~~D------r~iR~~LL~~i-----~~~i~~L------t------------- 362 (690)
T KOG1243|consen 319 GKDLDE---EE---YQVRIIPVLLKLFKSPD------RQIRLLLLQYI-----EKYIDHL------T------------- 362 (690)
T ss_pred hhhccc---cc---cccchhhhHHHHhcCcc------hHHHHHHHHhH-----HHHhhhc------C-------------
Confidence 344432 11 12223333444443221 11112233332 2221111 1
Q ss_pred HhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccch
Q 000134 646 EARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVG 725 (2096)
Q Consensus 646 ~~r~~~~l~~~l~~~~~~l~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~ 725 (2096)
+..-...-+.+++-++.+.|+.+|+++|+-+..+-. +.|+.. +=.+|++.|-++-.+ ..
T Consensus 363 ---~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~---------kL~~~~----Ln~Ellr~~ar~q~d-----~~ 421 (690)
T KOG1243|consen 363 ---KQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAP---------KLSKRN----LNGELLRYLARLQPD-----EH 421 (690)
T ss_pred ---HHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHh---------hhchhh----hcHHHHHHHHhhCcc-----cc
Confidence 111112446888999999999999999887665432 222211 012444554333222 12
Q ss_pred hhHHHHHHHhhcccCccC-ccc
Q 000134 726 QKLKLVCADCLGALGAVD-PAK 746 (2096)
Q Consensus 726 ~~I~~lca~CLG~IGalD-p~r 746 (2096)
..|+.--.-|||.||..+ |+.
T Consensus 422 ~~irtntticlgki~~~l~~~~ 443 (690)
T KOG1243|consen 422 GGIRTNTTICLGKIAPHLAASV 443 (690)
T ss_pred Ccccccceeeecccccccchhh
Confidence 368888889999999985 544
No 231
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=46.87 E-value=2.2e+02 Score=36.95 Aligned_cols=107 Identities=13% Similarity=0.248 Sum_probs=77.3
Q ss_pred chhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChH-HHHHHHHHhc-cC----ChhHHHHHhHh
Q 000134 1053 CQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPD-GLSGLARLHK-SL----SLQDELLSNKK 1126 (2096)
Q Consensus 1053 C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpD-gl~Gi~~~~~-~~----sl~~qil~~E~ 1126 (2096)
-+.|..|+-.+|.-.... | +..-.|.++|-..++.. ++.=+....+ .+ -+..|+-.+-+
T Consensus 182 t~~~~~ai~lle~L~~~~-----p----------ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERD-----P----------EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred cccHHHHHHHHHHHHhcC-----C----------cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 367999999999864321 2 23446888887776553 2222222222 11 24456777789
Q ss_pred hcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhh
Q 000134 1127 SGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGL 1174 (2096)
Q Consensus 1127 ~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl 1174 (2096)
.|+.+.|+.+..++.+..|++.+.-..+-+|+..+|+|+..+.-.+..
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999999999999999999988888999999999999887766653
No 232
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=46.60 E-value=1.2e+02 Score=35.25 Aligned_cols=79 Identities=20% Similarity=0.254 Sum_probs=54.6
Q ss_pred HHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCC
Q 000134 1389 KLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQ 1468 (2096)
Q Consensus 1389 KLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~ 1468 (2096)
.=+++.|+..+|....+.++.-.|.- + +. ..+.--...|-+++++++|-
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~-------------------~----~e-~rsIly~Nraaa~iKl~k~e------- 151 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPST-------------------S----TE-ERSILYSNRAAALIKLRKWE------- 151 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccc-------------------c----HH-HHHHHHhhhHHHHHHhhhHH-------
Confidence 34677888999998888887643311 0 00 01111123477899999994
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHhhhHHH
Q 000134 1469 KEDVITLYSRVRELQPMWEKGYFYMAKYCDDV 1500 (2096)
Q Consensus 1469 ~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l 1500 (2096)
..++...+|++++|+++|+...-|..|.+.
T Consensus 152 --~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 152 --SAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred --HHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 467788999999999999998877777654
No 233
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=46.21 E-value=2.3e+02 Score=35.99 Aligned_cols=94 Identities=18% Similarity=0.362 Sum_probs=63.4
Q ss_pred hHHHHHHhhhccC-CCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHH------HHhccccccch--hhHH
Q 000134 472 PRVIRKVSTVLTG-NEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILI------EMIGSHLTTYV--PKIL 542 (2096)
Q Consensus 472 ~~~~~~~~~~~~~-~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li------~l~g~~v~~~~--pqI~ 542 (2096)
.+|+...-.+++. ....+.||..|+=.....++ +++.++..-.|+++|+=||+++ ++|-.+|+... --||
T Consensus 182 sdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~-~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M 260 (335)
T PF08569_consen 182 SDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYN-KLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMM 260 (335)
T ss_dssp HHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHH-HHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-HHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHH
Confidence 4566655555554 35678999999998888777 5667777778999999999987 45555655432 2233
Q ss_pred HHHHHHhcCCCcchhhhHHHHHHHHH
Q 000134 543 VLLMHAINKESLQCEGLSVLHFFIEQ 568 (2096)
Q Consensus 543 a~L~~aL~~~~L~~~~l~~W~~fv~~ 568 (2096)
-.|++ ..+.++..||.+..+||.+
T Consensus 261 ~lL~d--~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 261 NLLRD--KSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHTT---S-HHHHHHHHHHHHHHHH-
T ss_pred HHhcC--cchhhhHHHHHHHHHHHhC
Confidence 33332 2455888888888888887
No 234
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.38 E-value=1.6e+02 Score=40.20 Aligned_cols=139 Identities=17% Similarity=0.204 Sum_probs=87.2
Q ss_pred hhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHHHHH
Q 000134 165 QLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDV 244 (2096)
Q Consensus 165 ~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (2096)
|..+|+-|+..+. ..+ +.+..+++||..+|.+.+.+||.-+++++.-.- . +-.-.-.=.+.
T Consensus 223 qlViVE~Irkv~~-~~p----~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS---------~-----~p~alk~Aa~~ 283 (948)
T KOG1058|consen 223 QLVIVELIRKVCL-ANP----AEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLS---------N-----DPTALKAAAST 283 (948)
T ss_pred HHHHHHHHHHHHh-cCH----HHhhHHHHHHHHHHhcCCchhhhhhcceEEEcc---------C-----CHHHHHHHHHH
Confidence 3445555555544 221 236789999999999999999988877776522 1 11111111223
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHH-HHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccch
Q 000134 245 IKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLIL-LVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSK 323 (2096)
Q Consensus 245 ~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~-Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~ 323 (2096)
+.+.+..-.|.-++--.|.-+.++ + ...|-...-|+. .+..|..|+.-||..++.....++..|+.
T Consensus 284 ~i~l~~kesdnnvklIvldrl~~l-~---~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNv--------- 350 (948)
T KOG1058|consen 284 YIDLLVKESDNNVKLIVLDRLSEL-K---ALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNV--------- 350 (948)
T ss_pred HHHHHHhccCcchhhhhHHHHHHH-h---hhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccH---------
Confidence 334344444544666666666665 2 244444556665 78889999999999999999999776644
Q ss_pred hhhhhhhhhHHHHHHhc
Q 000134 324 AVLICNELFDYLSVRLA 340 (2096)
Q Consensus 324 ~~~~~~~l~~~~~~~l~ 340 (2096)
+++-.++-|.+.
T Consensus 351 -----ediv~~Lkke~~ 362 (948)
T KOG1058|consen 351 -----EDIVQFLKKEVM 362 (948)
T ss_pred -----HHHHHHHHHHHH
Confidence 455566666554
No 235
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=45.09 E-value=2.8e+02 Score=34.32 Aligned_cols=141 Identities=18% Similarity=0.202 Sum_probs=88.1
Q ss_pred HhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccch
Q 000134 198 LLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQ 277 (2096)
Q Consensus 198 ~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e 277 (2096)
.+.+++.+||+.+-+.++.+- ++. +..-..++..+.+++ ..+++.|+.|.+-++.++.... +.+
T Consensus 35 ~v~~~~~~vR~~al~cLGl~~-------Lld------~~~a~~~l~l~~~~~-~~~~~~v~~~al~~l~Dll~~~--g~~ 98 (298)
T PF12719_consen 35 AVQSSDPAVRELALKCLGLCC-------LLD------KELAKEHLPLFLQAL-QKDDEEVKITALKALFDLLLTH--GID 98 (298)
T ss_pred HhcCCCHHHHHHHHHHHHHHH-------HhC------hHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHc--Cch
Confidence 458999999999988777752 222 223345566677777 5568889999999999985432 222
Q ss_pred hH------------HHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccchhhhhhhhhhHHHHHHhcCchHH
Q 000134 278 HF------------LFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIM 345 (2096)
Q Consensus 278 ~~------------~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~rp~~ 345 (2096)
.+ ...+=.|..+|.+.++-++.+|..=+.++--+. +. .+ .|.+
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~----------~i-------~~--------~~~v 153 (298)
T PF12719_consen 99 IFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG----------RI-------SD--------PPKV 153 (298)
T ss_pred hccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC----------CC-------Cc--------HHHH
Confidence 22 223335888899999899999998888872222 11 11 2333
Q ss_pred HHHHHHHHhCCCh--HHHHHhhcccccchhhhcccc
Q 000134 346 VREFAEAAFGVET--EELVKKMIPAVLPKLVVSQQD 379 (2096)
Q Consensus 346 ~~~~~e~llg~~~--~~fL~~~~~~~LP~LVl~~~~ 379 (2096)
+..+--..+.-.+ ++-|+.++.+-+|...-.+..
T Consensus 154 L~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~ 189 (298)
T PF12719_consen 154 LSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPE 189 (298)
T ss_pred HHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHH
Confidence 3333211122122 347788888888888876543
No 236
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=45.00 E-value=37 Score=30.60 Aligned_cols=55 Identities=22% Similarity=0.253 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhccc
Q 000134 669 LNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGAL 739 (2096)
Q Consensus 669 ~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~I 739 (2096)
+.||..|+.-|..+.....+.+. +.+.+++..|+.+..+. +++++..++.|||.|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~-----------~~~~~~~~~L~~~L~d~-----~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQ-----------PYLPELLPALIPLLQDD-----DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHH-----------HHHHHHHHHHHHHTTSS-----SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHH-----------HHHHHHHHHHHHHHcCC-----CHHHHHHHHHHHhcC
Confidence 35777787777764444444333 35566777777666442 248999999999975
No 237
>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro
Probab=44.66 E-value=26 Score=40.12 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=22.4
Q ss_pred ccCCCCCceeeecCCCcEEeeeccccc
Q 000134 1932 LGDRHGENILFDSTTGDCVHVDFSCLF 1958 (2096)
Q Consensus 1932 LGDRH~eNILld~~tG~vvHIDF~~~F 1958 (2096)
=+|=||+|||++ +|++.=||||.+-
T Consensus 141 HrDlkP~NIll~--~~~~~liDFG~a~ 165 (190)
T cd05145 141 HGDLSEYNILYH--DGKPYIIDVSQAV 165 (190)
T ss_pred cCCCChhhEEEE--CCCEEEEEcccce
Confidence 379999999998 8999999999874
No 238
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=44.51 E-value=1.2e+03 Score=33.46 Aligned_cols=65 Identities=11% Similarity=0.160 Sum_probs=43.1
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHHccCCCc-hhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhh
Q 000134 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTS-VQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKK 1183 (2096)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~-~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~ 1183 (2096)
+-...|-..|++++|-.+|-++++..|++ +-.+.|+-.=....|.+....-..+.+....|+...
T Consensus 312 ~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~e 377 (1018)
T KOG2002|consen 312 QLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYE 377 (1018)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHH
Confidence 45677889999999999999999999988 444445544444445555444444455555554433
No 239
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=44.03 E-value=52 Score=31.54 Aligned_cols=63 Identities=19% Similarity=0.219 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CCC-----hHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQAS----GAP-----NVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~----~~~-----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
+++.++...|.+-+..|+++.|.....+|.+. ++. .....-|.++-..|+.++|++.++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56788999999999999999999988887643 321 2345667888999999999999998864
No 240
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=43.37 E-value=40 Score=41.68 Aligned_cols=62 Identities=18% Similarity=0.281 Sum_probs=47.5
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccCh-HHHHHHhhhhhccChh
Q 000134 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHL-QAMVTHVDGLISRIPQ 1180 (2096)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~-~~ll~~~~gl~~~~p~ 1180 (2096)
-++..|-..|+|++|.+..+.+++.+|++.+...+++.|..-+|.. +....+...+....|+
T Consensus 206 g~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 206 GLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 3455677999999999999999999999999999999999999988 5555566665544553
No 241
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=43.13 E-value=1.1e+02 Score=41.63 Aligned_cols=76 Identities=14% Similarity=0.087 Sum_probs=57.4
Q ss_pred HHHHHHHHhcCCChHHHHHHHH-HhccCC-----hhHHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhcc
Q 000134 1089 VSFLMEIYSFLDEPDGLSGLAR-LHKSLS-----LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMC 1162 (2096)
Q Consensus 1089 ~~~L~~IYa~LdEpDgl~Gi~~-~~~~~s-----l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LG 1162 (2096)
.-...+.|...+-+|++.-+.. ..+... .....+.++..|.|.+|.++|..++..+|+++.....+=+||.+.|
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G 732 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELG 732 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC
Confidence 3345566777888887764432 222211 2334578999999999999999999999999999999999999999
Q ss_pred Ch
Q 000134 1163 HL 1164 (2096)
Q Consensus 1163 q~ 1164 (2096)
+.
T Consensus 733 ~~ 734 (799)
T KOG4162|consen 733 SP 734 (799)
T ss_pred Cc
Confidence 64
No 242
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.05 E-value=1.1e+03 Score=32.87 Aligned_cols=284 Identities=18% Similarity=0.268 Sum_probs=151.0
Q ss_pred cccchhhHHHHHHHHHHhhhc------CChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCcchHHHHHHHH
Q 000134 232 ASSRSNELKLLDVIKLAFTAA------DDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLI 305 (2096)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~------~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i 305 (2096)
..+....--.|+.++-.+... +|+..-+-+=+-.++++.. .+-+ +-+|+.++.+-+--||-.|+..|
T Consensus 74 ~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik----~qd~---I~lll~~~e~~DF~VR~~aIqLl 146 (970)
T KOG0946|consen 74 YMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIK----NQDN---ITLLLQSLEEFDFHVRLYAIQLL 146 (970)
T ss_pred cCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHc----Cchh---HHHHHHHHHhhchhhhhHHHHHH
Confidence 344444455566665544443 2444344444455555432 2222 23577778888888999999888
Q ss_pred HHHhhhhcccccccccchhhhhhhhhhHHHHHHhcCchHHHHHHHHHHhCCChHHHHHhhcccccchhhhccccChhHHH
Q 000134 306 RKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVKKMIPAVLPKLVVSQQDNDQAVN 385 (2096)
Q Consensus 306 ~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~rp~~~~~~~e~llg~~~~~fL~~~~~~~LP~LVl~~~~~~~~~~ 385 (2096)
-++-+. +. .-+-+-+...|.-+..+. ++|- +.++-++----+.|--||... .
T Consensus 147 salls~-----------r~--------~e~q~~ll~~P~gIS~lm-dlL~-DsrE~IRNe~iLlL~eL~k~n-------~ 198 (970)
T KOG0946|consen 147 SALLSC-----------RP--------TELQDALLVSPMGISKLM-DLLR-DSREPIRNEAILLLSELVKDN-------S 198 (970)
T ss_pred HHHHhc-----------CC--------HHHHHHHHHCchhHHHHH-HHHh-hhhhhhchhHHHHHHHHHccC-------c
Confidence 777221 11 123345667777766665 3443 233333322222223333221 1
Q ss_pred HHHHHHHHcCCCchhHHhhhHHHHHHHHhcccc----HHHHHHHHHHHhhhc--CCChHHHHH--HhhHHHHHHHHH--h
Q 000134 386 IINELAKCLNTDMVPLIVTWIPKVLAFALHQAD----ERRLLSALEFYCIQT--GSDNQEIFA--AALPALLDELIC--F 455 (2096)
Q Consensus 386 ~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~~~----~~~~~~~l~~~~~~~--~~~~~~~~~--~~~~~~l~eLl~--~ 455 (2096)
-|+.|-. +.|-|-+.+. ++-.++ +=-+..||.++.+-. +++.|.+|+ ..+|.+. .|+= .
T Consensus 199 ~IQKlVA---------FENaFerLfs-IIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~-klL~~f~ 267 (970)
T KOG0946|consen 199 SIQKLVA---------FENAFERLFS-IIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLL-KLLSVFE 267 (970)
T ss_pred hHHHHHH---------HHHHHHHHHH-HHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHH-hhcCccc
Confidence 1222211 1233333333 222222 235788998877764 567888988 4455554 3331 2
Q ss_pred hcCCCchh---HhhhhcchhHHHHHHhhhccCCCC-------hhhhhHHHHHHHHHHhhhhhcCC-CChHHHHHHHHHHH
Q 000134 456 VDGGDSDE---INERLNRVPRVIRKVSTVLTGNED-------LPGFLRNHFVGLLNSIDRKMLHA-EDLSLQKQALKRIE 524 (2096)
Q Consensus 456 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-------~~~fl~~~~LGil~~~~~~l~~~-~~~~~k~~~l~sl~ 524 (2096)
.|++ ++ ..+|.+.+..+++-+-..++..+. -..-.+.|.|-.+-.+ ++++ -+..+...+|....
T Consensus 268 ~~d~--Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~i---l~~~~vp~dIltesiitvA 342 (970)
T KOG0946|consen 268 FGDG--EVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTI---LMHPGVPADILTESIITVA 342 (970)
T ss_pred ccCc--ccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHH---HcCCCCcHhHHHHHHHHHH
Confidence 3442 11 134677788888887766554322 2245566666665433 2343 23456678888888
Q ss_pred HHHHHh-----------ccccccchhhHHHHHHHHhcC---CCcchhhhHHHHHHH
Q 000134 525 ILIEMI-----------GSHLTTYVPKILVLLMHAINK---ESLQCEGLSVLHFFI 566 (2096)
Q Consensus 525 ~li~l~-----------g~~v~~~~pqI~a~L~~aL~~---~~L~~~~l~~W~~fv 566 (2096)
++|+=. -++...-||-|...|.+.... ..+|..++.|..+|+
T Consensus 343 evVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l 398 (970)
T KOG0946|consen 343 EVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYL 398 (970)
T ss_pred HHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 888732 234444688888888888753 346666666665544
No 243
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=42.99 E-value=2.9e+02 Score=30.50 Aligned_cols=65 Identities=9% Similarity=0.010 Sum_probs=51.1
Q ss_pred CCChhhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhcc
Q 000134 631 LPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGE 697 (2096)
Q Consensus 631 Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~~l~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e 697 (2096)
=|+....-++-..++. .+-..++.++.+.+|++|-|+.|.+.||.=|..+.+.....+|.-+.+.
T Consensus 16 ~~dw~~ileicD~In~--~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~ 80 (139)
T cd03567 16 EEDWEAIQAFCEQINK--EPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKF 80 (139)
T ss_pred CCCHHHHHHHHHHHHc--CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhH
Confidence 3555555666666754 2346789999999999999999999999999999988877777766544
No 244
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=42.92 E-value=77 Score=40.36 Aligned_cols=124 Identities=15% Similarity=0.252 Sum_probs=75.5
Q ss_pred HHHhHhhcCHHHHHHHHHHHHccCCCchhhhh--hHHHHH--HhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhc
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHS--DVLNCL--LNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRL 1196 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~--glL~CL--~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrl 1196 (2096)
.-..-+.|++.+|-+||-.+|+.+|+++.... =+=+|+ ..||+....+.-.+..++-.|++-+. ...+.+|--.|
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syika-ll~ra~c~l~l 334 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKA-LLRRANCHLAL 334 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHH-HHHHHHHHHHH
Confidence 33456899999999999999999999875421 122332 34688776665555444444443332 33567888889
Q ss_pred CChhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHH
Q 000134 1197 GRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSK 1252 (2096)
Q Consensus 1197 g~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR 1252 (2096)
++|+.--++...+-+ .+.+......+.+|-.+|++..+.+-...+-..|
T Consensus 335 e~~e~AV~d~~~a~q-------~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~ 383 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQ-------LEKDCEIRRTLREAQLALKKSKRKDWYKILGISR 383 (486)
T ss_pred HHHHHHHHHHHHHHh-------hccccchHHHHHHHHHHHHHhhhhhHHHHhhhhh
Confidence 999776555544322 1122345566777777877654444444443333
No 245
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=42.51 E-value=24 Score=28.12 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=23.2
Q ss_pred HHHHhHhhcCHHHHHHHHHHHHccCCC
Q 000134 1120 ELLSNKKSGNWAEVFTSCEQALQMEPT 1146 (2096)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~ 1146 (2096)
....|.+.|++++|..+|+++++..|+
T Consensus 7 lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 7 LGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 345688999999999999999998874
No 246
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=41.99 E-value=2.4e+02 Score=37.89 Aligned_cols=69 Identities=14% Similarity=0.123 Sum_probs=54.2
Q ss_pred ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHH
Q 000134 1381 PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRW 1460 (2096)
Q Consensus 1381 ~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakW 1460 (2096)
|.++-..|=....+|++++|...+++++.-. +. +.++.++|+.
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~------------------------------------ps-~~a~~~lG~~ 462 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE------------------------------------MS-WLNYVLLGKV 462 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------------------------------------CC-HHHHHHHHHH
Confidence 4445455555667899999999999987521 11 5579999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhccchHH
Q 000134 1461 IHYTGQKQKEDVITLYSRVRELQPMWEK 1488 (2096)
Q Consensus 1461 l~~~~~~~~~~i~~~Y~~a~~l~~~weK 1488 (2096)
....|+ .++.+..|++|+.++|..+.
T Consensus 463 ~~~~G~--~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 463 YELKGD--NRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHcCC--HHHHHHHHHHHHhcCCCCch
Confidence 988887 89999999999999998763
No 247
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=41.66 E-value=21 Score=47.09 Aligned_cols=39 Identities=28% Similarity=0.184 Sum_probs=28.3
Q ss_pred HhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccc
Q 000134 1919 TTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLF 1958 (2096)
Q Consensus 1919 S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F 1958 (2096)
+||+=|+---=|==-|-.|+|||||+ .|.|=-.|||.|-
T Consensus 739 tcAiesVHkmGFIHRDiKPDNILIDr-dGHIKLTDFGLCT 777 (1034)
T KOG0608|consen 739 TCAIESVHKMGFIHRDIKPDNILIDR-DGHIKLTDFGLCT 777 (1034)
T ss_pred HHHHHHHHhccceecccCccceEEcc-CCceeeeeccccc
Confidence 55665552222223588899999995 9999999999884
No 248
>TIGR03843 conserved hypothetical protein. This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.
Probab=40.26 E-value=25 Score=41.73 Aligned_cols=45 Identities=22% Similarity=0.267 Sum_probs=39.4
Q ss_pred HhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCCC
Q 000134 1919 TTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLL 1964 (2096)
Q Consensus 1919 S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l 1964 (2096)
.+.-|+++=+++.=.|||+.|||..+ +|+++-||=|+||....+|
T Consensus 134 ~l~riaVfDi~inNaDRk~GhiL~~~-dg~l~~IDHGl~f~~~~kl 178 (253)
T TIGR03843 134 QLRRMAVFDALVNNADRKGGHVLPGP-DGRVWGVDHGVCFHVEPKL 178 (253)
T ss_pred HHhhhhhheeeeecCCCCCCcEeEcC-CCcEEEecCceecCCCCcc
Confidence 45668889999999999999999985 8999999999999876444
No 249
>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c
Probab=40.06 E-value=16 Score=42.08 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.8
Q ss_pred cCCCCCceeeecCCCcEEeeeccccc
Q 000134 1933 GDRHGENILFDSTTGDCVHVDFSCLF 1958 (2096)
Q Consensus 1933 GDRH~eNILld~~tG~vvHIDF~~~F 1958 (2096)
||=+|+|||++ +|++.=||||..-
T Consensus 142 rDlkP~NIli~--~~~v~LiDFG~a~ 165 (190)
T cd05147 142 ADLSEYNLLYH--DGKLYIIDVSQSV 165 (190)
T ss_pred CCCCHHHEEEE--CCcEEEEEccccc
Confidence 89999999998 5999999999864
No 250
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=39.78 E-value=65 Score=42.18 Aligned_cols=83 Identities=13% Similarity=0.211 Sum_probs=66.6
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCC
Q 000134 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGR 1198 (2096)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~ 1198 (2096)
+|-..--..|++++|..+|-.+++.+|.|.-...+-..|+..+|+|+..+.-+..-..-.|+|.+.+...+++ +--+|+
T Consensus 7 ~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa-~~~lg~ 85 (539)
T KOG0548|consen 7 EKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAA-LFGLGD 85 (539)
T ss_pred HHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHH-HHhccc
Confidence 4444556789999999999999999999887778889999999999987766655455679998888777764 456888
Q ss_pred hhhH
Q 000134 1199 WDLM 1202 (2096)
Q Consensus 1199 Wd~l 1202 (2096)
++.-
T Consensus 86 ~~eA 89 (539)
T KOG0548|consen 86 YEEA 89 (539)
T ss_pred HHHH
Confidence 8764
No 251
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=39.77 E-value=1.2e+02 Score=31.44 Aligned_cols=82 Identities=22% Similarity=0.208 Sum_probs=57.1
Q ss_pred HHHHHHHHhhhcccchhHHHHHHH-HHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccchhhhhhhhhhHHHHHHhc
Q 000134 262 LESTAELMMAVDVHSQHFLFLLIL-LVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLA 340 (2096)
Q Consensus 262 l~~~~~i~~~~~~~~e~~~~~l~~-Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~ 340 (2096)
|+.++.++.+-....+-..--++. ++..++.+++-||-.|+.-+.++++..+.. +..+. +++|+.+.+.+.
T Consensus 7 li~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~----~l~~f----~~IF~~L~kl~~ 78 (97)
T PF12755_consen 7 LIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGE----ILPYF----NEIFDALCKLSA 78 (97)
T ss_pred HHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH----HHHHH----HHHHHHHHHHHc
Confidence 555666544443333333333333 789999999999999999999999887542 23354 677999988777
Q ss_pred CchHHHHHHHH
Q 000134 341 SRPIMVREFAE 351 (2096)
Q Consensus 341 ~rp~~~~~~~e 351 (2096)
---.-++.-|+
T Consensus 79 D~d~~Vr~~a~ 89 (97)
T PF12755_consen 79 DPDENVRSAAE 89 (97)
T ss_pred CCchhHHHHHH
Confidence 66666777776
No 252
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=39.73 E-value=84 Score=39.93 Aligned_cols=88 Identities=11% Similarity=0.170 Sum_probs=63.1
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhccCChhHHHHHh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSN 1124 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~~sl~~qil~~ 1124 (2096)
+=+.-.+.-+.|.|||-|-|..|+-.+. +++.|+ +.|- ..
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~~r---------------~~~ali-----------lKG~--------------lL 344 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSEPR---------------NHEALI-----------LKGR--------------LL 344 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccCcc---------------cchHHH-----------hccH--------------HH
Confidence 4456678889999999999999985322 112221 2221 12
Q ss_pred HhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhh
Q 000134 1125 KKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVD 1172 (2096)
Q Consensus 1125 E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~ 1172 (2096)
.+.||-++|.=.+..+....|..++.+-|++.|+++.|.....+..++
T Consensus 345 ~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An 392 (564)
T KOG1174|consen 345 IALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALAN 392 (564)
T ss_pred HhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 367788888888888888889999999999999999998766544444
No 253
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.65 E-value=4.7e+02 Score=34.48 Aligned_cols=175 Identities=15% Similarity=0.167 Sum_probs=106.1
Q ss_pred hHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHhc---CCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhh
Q 000134 513 LSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAIN---KESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALI 589 (2096)
Q Consensus 513 ~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL~---~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~li 589 (2096)
-..|..|++.|+.+-..|-..+.+.-+++..-+.-+|- +.+..-.+++|....+.... -.+|++.+-.|...+.
T Consensus 272 a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~---~~~l~~~~l~ialrlR 348 (533)
T KOG2032|consen 272 AKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKAS---NDDLESYLLNIALRLR 348 (533)
T ss_pred hHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhh---hcchhhhchhHHHHHH
Confidence 35677899999999888766788888888777777773 34555566666666555543 3679999999999999
Q ss_pred hccccCCCCchhhHHHHHHHHHHHHHHh--------HHHHHhhcccCCCCCCh-------------------hh--hHHH
Q 000134 590 PFLERDKDNPSVLLNKVVKILEDLVLKN--------RAILKQHIHEFPLLPSI-------------------AA--LTEV 640 (2096)
Q Consensus 590 p~~~~~~~~~~~~~~~~~~il~~Li~~n--------~~~L~~~i~~lp~Lp~i-------------------p~--l~~v 640 (2096)
++|+..++ ..+--+..++..|-.=. -+.+..-+. |++-+| |- .+++
T Consensus 349 ~l~~se~~---~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~--~lllhl~d~~p~va~ACr~~~~~c~p~l~rke~ 423 (533)
T KOG2032|consen 349 TLFDSEDD---KMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLA--PLLLHLQDPNPYVARACRSELRTCYPNLVRKEL 423 (533)
T ss_pred HHHHhcCh---hhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccc--cceeeeCCCChHHHHHHHHHHHhcCchhHHHHH
Confidence 99985442 33555666666553221 011221111 222221 11 1122
Q ss_pred HHHHHHhcC-CC-CHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHh
Q 000134 641 NKAIQEARG-PM-TLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALIN 695 (2096)
Q Consensus 641 ~~~l~~~r~-~~-~l~~~l~~~~~~l~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~ 695 (2096)
....++.-. .+ ..++..+.|+..++|-+++.-..++++...+++..-+.++..+.
T Consensus 424 ~~~~q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aav 480 (533)
T KOG2032|consen 424 YHLFQESLDTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAV 480 (533)
T ss_pred HHHHhhhhHHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHH
Confidence 222221111 11 12233344555699999999999999999999877665555443
No 254
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=38.92 E-value=2.4e+02 Score=31.93 Aligned_cols=89 Identities=19% Similarity=0.365 Sum_probs=64.9
Q ss_pred HHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhccc-------cccchhhHHHHHHHHhcCCCcchhhhHHHHHHHHH
Q 000134 496 FVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSH-------LTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQ 568 (2096)
Q Consensus 496 ~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~~-------v~~~~pqI~a~L~~aL~~~~L~~~~l~~W~~fv~~ 568 (2096)
+=+++..++. +++...++.++..+..|+..+++. .++.+|++...|..-++.+.....++++...++..
T Consensus 69 ~~~Ll~~L~~----~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 69 LRALLSILEK----PDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQDSSCPETALDALATLLPH 144 (165)
T ss_pred HHHHHHHHcC----CCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 4445555553 456778899999999999998774 23455666665555555567788888888888886
Q ss_pred hccCCCcchhhHHHHHHHHhhhcc
Q 000134 569 LSRVSPSSTKHVISQVFAALIPFL 592 (2096)
Q Consensus 569 L~~~~~~~l~~ll~~i~~~lip~~ 592 (2096)
.|.-++|+-+++-..+++++
T Consensus 145 ----~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 145 ----HPTTFRPFANKIESALLSLL 164 (165)
T ss_pred ----CCccccchHHHHHHHHHHHh
Confidence 36778899888888887765
No 255
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=38.87 E-value=31 Score=28.32 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=22.0
Q ss_pred HHHHHHhccchHHHHHHHHhhhHH
Q 000134 1476 YSRVRELQPMWEKGYFYMAKYCDD 1499 (2096)
Q Consensus 1476 Y~~a~~l~~~weK~~~~la~y~d~ 1499 (2096)
|++|++++|+...+|+.+|..|..
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~ 25 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLN 25 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHH
Confidence 889999999999999999998753
No 256
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=38.13 E-value=3.4e+02 Score=32.56 Aligned_cols=113 Identities=19% Similarity=0.211 Sum_probs=77.6
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCh--HHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASGAPN--VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~~~~~--~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~ 1424 (2096)
.....|+-.|.+.-+-|..+.|..+-.+|.++.+.+ +.=-+-=+|.++|+..+|.+.+++++..
T Consensus 67 s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~-------------- 132 (250)
T COG3063 67 SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD-------------- 132 (250)
T ss_pred ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC--------------
Confidence 345679999999999999999999999998886543 4446677899999999999999998762
Q ss_pred cccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHh
Q 000134 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAK 1495 (2096)
Q Consensus 1425 ~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~ 1495 (2096)
|..+.+ ++++.-+|=.....| +.+.....|+++++++|+..-+...+++
T Consensus 133 ------P~Y~~~--------------s~t~eN~G~Cal~~g--q~~~A~~~l~raL~~dp~~~~~~l~~a~ 181 (250)
T COG3063 133 ------PAYGEP--------------SDTLENLGLCALKAG--QFDQAEEYLKRALELDPQFPPALLELAR 181 (250)
T ss_pred ------CCCCCc--------------chhhhhhHHHHhhcC--CchhHHHHHHHHHHhCcCCChHHHHHHH
Confidence 222211 111111221122233 3566778899999999986555444443
No 257
>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]
Probab=38.10 E-value=46 Score=40.73 Aligned_cols=48 Identities=31% Similarity=0.450 Sum_probs=35.2
Q ss_pred hCCChhH-HHHHHHHHHHHhhHHHHHhhhccc----cCCCCCceeeecCCCcEEeeeccccc
Q 000134 1902 TFSEPAA-WFRARVAYAHTTAVWSMVGHIVGL----GDRHGENILFDSTTGDCVHVDFSCLF 1958 (2096)
Q Consensus 1902 ~f~~p~~-w~~~R~~ft~S~Av~S~vgYILGL----GDRH~eNILld~~tG~vvHIDF~~~F 1958 (2096)
+|++|.+ ||.+ -+.+.+-|+=++ -|--|||||+| .+|.+=-+|||+.=
T Consensus 140 rF~e~~arFYAA--------eivlAleylH~~~iiYRDLKPENiLlD-~~G~iKitDFGFAK 192 (355)
T KOG0616|consen 140 RFSEPHARFYAA--------EIVLALEYLHSLDIIYRDLKPENLLLD-QNGHIKITDFGFAK 192 (355)
T ss_pred CCCchhHHHHHH--------HHHHHHHHHHhcCeeeccCChHHeeec-cCCcEEEEeccceE
Confidence 6777755 3322 245666777555 48899999999 59999999999864
No 258
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=38.01 E-value=1.7e+03 Score=33.55 Aligned_cols=103 Identities=18% Similarity=0.306 Sum_probs=61.4
Q ss_pred CCChhhHHHHHHHhh---cccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhh
Q 000134 142 HSDFSFLLNIYFEFL---YDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFL 218 (2096)
Q Consensus 142 ~~~~~~~~~~~~~~l---~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~ 218 (2096)
+..|++--..|.+++ +.++.-.++--++++|..|.--.+ .++-.. ...+-|.-=++|....||+||---++-|+
T Consensus 807 ~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp-~vL~~~--dvq~~Vh~R~~DssasVREAaldLvGrfv 883 (1692)
T KOG1020|consen 807 ARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADP-SVLSRP--DVQEAVHGRLNDSSASVREAALDLVGRFV 883 (1692)
T ss_pred hhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcCh-HhhcCH--HHHHHHHHhhccchhHHHHHHHHHHhhhh
Confidence 334444333444444 349999999889999888776655 222211 12223333349999999999999999885
Q ss_pred --hhhhhhhhc-------cCcccccchhhHHHHHHHHH
Q 000134 219 --QDTVLSSLF-------LDENASSRSNELKLLDVIKL 247 (2096)
Q Consensus 219 --~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 247 (2096)
.+.+...+| .|++-+.+-.-..++.+||.
T Consensus 884 l~~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~ 921 (1692)
T KOG1020|consen 884 LSIPELIFQYYDQIIERILDTGVSVRKRVIKILRDICE 921 (1692)
T ss_pred hccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHH
Confidence 333333333 44433444333677777775
No 259
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=37.49 E-value=3.3e+02 Score=30.23 Aligned_cols=64 Identities=17% Similarity=0.171 Sum_probs=49.8
Q ss_pred CChhhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhcc
Q 000134 632 PSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGE 697 (2096)
Q Consensus 632 p~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~~l~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e 697 (2096)
|+....-++-..++.- ....++.++.+.+|++|.|+.|.++||.=|..+.+.....+|.-+.+.
T Consensus 16 ~dw~~il~icD~I~~~--~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask 79 (144)
T cd03568 16 ENWGLILDVCDKVKSD--ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASR 79 (144)
T ss_pred cCHHHHHHHHHHHhcC--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhH
Confidence 4544445555566543 457899999999999999999999999999999998887777666544
No 260
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=37.41 E-value=3.4e+02 Score=32.69 Aligned_cols=64 Identities=11% Similarity=0.053 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC-----ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCC
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGA-----PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKP 1412 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~~-----~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~ 1412 (2096)
.+.+..-|..+-+.|.++.|.....++...-+ +.+.+.-|..+.+.|+..+|+...++.++..|
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P 100 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP 100 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 44577889999999999999999888765432 23447777888999999999999999987543
No 261
>cd05153 HomoserineK_II Homoserine Kinase, type II. Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.
Probab=37.04 E-value=4.1e+02 Score=32.41 Aligned_cols=29 Identities=28% Similarity=0.245 Sum_probs=22.3
Q ss_pred hhhccccCCCCCceeeecCCCcEEeeeccc
Q 000134 1927 GHIVGLGDRHGENILFDSTTGDCVHVDFSC 1956 (2096)
Q Consensus 1927 gYILGLGDRH~eNILld~~tG~vvHIDF~~ 1956 (2096)
.+.+-=||-||+||+++. +|.+.-|||+.
T Consensus 174 ~~~l~HgD~~~~Nil~~~-~~~~~iIDfe~ 202 (296)
T cd05153 174 PRGVIHADLFRDNVLFDG-DELSGVIDFYF 202 (296)
T ss_pred CCcCCccCcCcccEEEeC-CceEEEeehhh
Confidence 345667999999999984 45456899965
No 262
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.99 E-value=1.6e+03 Score=32.88 Aligned_cols=163 Identities=13% Similarity=0.199 Sum_probs=101.7
Q ss_pred hhHHHHHHHHHhhcCCCchhHhhhhcchhHHHHHHh--hhcc--CCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHH
Q 000134 444 ALPALLDELICFVDGGDSDEINERLNRVPRVIRKVS--TVLT--GNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQA 519 (2096)
Q Consensus 444 ~~~~~l~eLl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~ 519 (2096)
..|.++.|.++...+.+ +..++. ..+-|..++ +..+ |.+....=|++.+.=|..-+- ++.....-+
T Consensus 735 ~i~k~I~EvIL~~Ke~n--~~aR~~--Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~------gd~~~~~as 804 (1176)
T KOG1248|consen 735 LIPKLIPEVILSLKEVN--VKARRN--AFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLV------GDSTRVVAS 804 (1176)
T ss_pred HHHHHHHHHHHhccccc--HHHHhh--HHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhc------ccHHHHHHH
Confidence 45667778877664433 322222 345555555 2222 334423333333222222211 222222223
Q ss_pred -HHHHHHHHHHhccccc-cchhhHHHHHHHHhc--CCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhccccC
Q 000134 520 -LKRIEILIEMIGSHLT-TYVPKILVLLMHAIN--KESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERD 595 (2096)
Q Consensus 520 -l~sl~~li~l~g~~v~-~~~pqI~a~L~~aL~--~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~ 595 (2096)
|-++..+..--+.+++ .+++|++.+....|. .++....|+.--.++|..+.+ +-+.+++.++..++..+.+
T Consensus 805 ~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe---~~l~~~~~~LL~sll~ls~-- 879 (1176)
T KOG1248|consen 805 DIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPE---ECLSPHLEELLPSLLALSH-- 879 (1176)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCH---HHHhhhHHHHHHHHHHHHH--
Confidence 7888888777788766 577999999888884 788999999999999998754 4567888888888877555
Q ss_pred CCCchhhHHHHHHHHHHHHHHhH-HHHH
Q 000134 596 KDNPSVLLNKVVKILEDLVLKNR-AILK 622 (2096)
Q Consensus 596 ~~~~~~~~~~~~~il~~Li~~n~-~~L~ 622 (2096)
+..-..+.++..+|+-||.+.. +.|+
T Consensus 880 -d~k~~~r~Kvr~LlekLirkfg~~eLe 906 (1176)
T KOG1248|consen 880 -DHKIKVRKKVRLLLEKLIRKFGAEELE 906 (1176)
T ss_pred -hhhHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 2233567899999999999865 4444
No 263
>cd05151 ChoK Choline Kinase (ChoK). The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph
Probab=36.44 E-value=26 Score=38.71 Aligned_cols=29 Identities=21% Similarity=0.231 Sum_probs=24.7
Q ss_pred hhhccccCCCCCceeeecCCCcEEeeecccc
Q 000134 1927 GHIVGLGDRHGENILFDSTTGDCVHVDFSCL 1957 (2096)
Q Consensus 1927 gYILGLGDRH~eNILld~~tG~vvHIDF~~~ 1957 (2096)
.+.+-=||=||+||+++ .|++.-|||+++
T Consensus 106 ~~~~~HgD~~~~Nil~~--~~~~~liDf~~a 134 (170)
T cd05151 106 DLVPCHNDLLPGNFLLD--DGRLWLIDWEYA 134 (170)
T ss_pred CceeecCCCCcCcEEEE--CCeEEEEecccc
Confidence 45566699999999998 788999999875
No 264
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=36.44 E-value=2.8e+02 Score=34.24 Aligned_cols=76 Identities=17% Similarity=0.128 Sum_probs=56.2
Q ss_pred hHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCc---hHHHHHH
Q 000134 1330 PLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRS---DGAIAEL 1404 (2096)
Q Consensus 1330 ~iLslRr~vl~~~~~~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~---~~Ai~~L 1404 (2096)
-+..+|.++=. +...++-|...+++-...|+++.|..|.-+|.++. .|+...-.|..|.-+.+. .+|.+.|
T Consensus 141 l~a~Le~~L~~----nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 141 LIARLETHLQQ----NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHHHHh----CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 34555554322 23446789999999999999999999999999984 466777888887666543 4677788
Q ss_pred HHHhh
Q 000134 1405 QQNLL 1409 (2096)
Q Consensus 1405 ~~~i~ 1409 (2096)
++++.
T Consensus 217 ~~al~ 221 (287)
T COG4235 217 RQALA 221 (287)
T ss_pred HHHHh
Confidence 87765
No 265
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=36.32 E-value=3.7e+02 Score=34.00 Aligned_cols=160 Identities=14% Similarity=0.089 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHHHHHH
Q 000134 166 LSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVI 245 (2096)
Q Consensus 166 ~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (2096)
..+++.|.-++-+-..--.+-..+-|.--+. .+.|++..||+.|.++|..-+||+.= .-..-.+.+++.++
T Consensus 101 e~ald~Le~lve~iDnAndl~~~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~--------~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 101 EDALDNLEELVEDIDNANDLISLGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPK--------SQEQVIELGALSKL 171 (342)
T ss_pred HHHHHHHHHHHHhhhhHHhHhhccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHH--------HHHHHHHcccHHHH
Confidence 4466665544333221112223455766667 45999999999999999998866541 11122333477788
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHH--HHHHHHHHhhCC--CCcchHHHHHHHHHHHhhhhccccccccc
Q 000134 246 KLAFTAADDPLILETLLESTAELMMAVDVHSQHFL--FLLILLVEQLDN--PHVTVRMNASRLIRKSCFFHLKGGCELLV 321 (2096)
Q Consensus 246 ~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~--~~l~~Li~~L~~--~n~~v~~~A~~~i~~l~~~~~~~~~~l~~ 321 (2096)
-.+++...+-++.=-.|-+++-+-+--..+-..|. -.+..|++-|-. .++.++..|...|..+...+...
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~------ 245 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSD------ 245 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhh------
Confidence 88888444443433445555444322211222221 134556776666 67888889999998887666331
Q ss_pred chhhhhhhhhhHHHHHHhcCc
Q 000134 322 SKAVLICNELFDYLSVRLASR 342 (2096)
Q Consensus 322 ~~~~~~~~~l~~~~~~~l~~r 342 (2096)
...++...|+.++.++.+-
T Consensus 246 --~d~~~~~~f~~~~~~l~~~ 264 (342)
T KOG2160|consen 246 --EDIASSLGFQRVLENLISS 264 (342)
T ss_pred --hhHHHHhhhhHHHHHHhhc
Confidence 1134555677777666543
No 266
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=35.57 E-value=3.9e+02 Score=29.17 Aligned_cols=64 Identities=17% Similarity=0.170 Sum_probs=47.1
Q ss_pred CChhhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhcc
Q 000134 632 PSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGE 697 (2096)
Q Consensus 632 p~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~~l~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e 697 (2096)
|+....-++-..++.- ....++.++.+.+|++|.|+.|.+.||.=|..+.+.....++.-+.+.
T Consensus 16 ~dw~~~l~icD~i~~~--~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~ 79 (133)
T smart00288 16 EDWELILEICDLINST--PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASK 79 (133)
T ss_pred cCHHHHHHHHHHHhCC--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhH
Confidence 3333333444444322 456789999999999999999999999999999988777777666543
No 267
>PF12487 DUF3703: Protein of unknown function (DUF3703) ; InterPro: IPR022172 This family of proteins is found in bacteria. Proteins in this family are typically between 113 and 135 amino acids in length.
Probab=35.45 E-value=1.3e+02 Score=31.93 Aligned_cols=58 Identities=22% Similarity=0.279 Sum_probs=46.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCCh------HHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1352 WLQYAKLCRLAGHYETATRAILEAQASGAPN------VHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1352 WL~~AklARKag~~~~A~~all~a~~~~~~~------~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
=+..|+.|+++|.+++|+..|.+|+-++-+. .+.---++=|.+++.++++-.+-..+-
T Consensus 12 el~~a~~a~~~~~~~~aw~hLErAHIlgQ~~~~~H~~~H~~ML~~a~r~rd~rEv~GQ~~Rl~~ 75 (112)
T PF12487_consen 12 ELEAAREALAAGDLQQAWRHLERAHILGQPYPWLHTRVHWAMLRFALRQRDRREVLGQLLRLIV 75 (112)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhHHhcCCchhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3788999999999999999999999887442 455566778999999999876665554
No 268
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=34.95 E-value=2.5e+02 Score=37.99 Aligned_cols=113 Identities=18% Similarity=0.217 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCChHHH--HHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccccc
Q 000134 1350 NCWLQYAKLCRLAGHYETATRAILEAQASGAPNVHM--EKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSL 1427 (2096)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~all~a~~~~~~~~~i--E~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~ 1427 (2096)
..|-=..=+..|.++++.|...+.+|...++.+..| ---+.+-..|+.++|++.+++++.-
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l----------------- 552 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL----------------- 552 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc-----------------
Confidence 346666667889999999999999999888766433 3346777889999999999998751
Q ss_pred CCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHH
Q 000134 1428 SLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDV 1500 (2096)
Q Consensus 1428 ~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l 1500 (2096)
.|.++.+. -.+|+.+..+++ -++....+.+..++-|+-.-.||-+|+-|.++
T Consensus 553 --d~kn~l~~----------~~~~~il~~~~~---------~~eal~~LEeLk~~vP~es~v~~llgki~k~~ 604 (638)
T KOG1126|consen 553 --DPKNPLCK----------YHRASILFSLGR---------YVEALQELEELKELVPQESSVFALLGKIYKRL 604 (638)
T ss_pred --CCCCchhH----------HHHHHHHHhhcc---------hHHHHHHHHHHHHhCcchHHHHHHHHHHHHHH
Confidence 12222111 122333333333 34566677788888888888899999988654
No 269
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=34.83 E-value=3.3e+02 Score=29.91 Aligned_cols=48 Identities=23% Similarity=0.228 Sum_probs=41.1
Q ss_pred CCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhcc
Q 000134 650 PMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGE 697 (2096)
Q Consensus 650 ~~~l~~~l~~~~~~l~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e 697 (2096)
.....+.++.+-+|++|.|+.|.+.||.=|..+.+.....++.-+.+.
T Consensus 37 ~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~ 84 (140)
T PF00790_consen 37 PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASK 84 (140)
T ss_dssp TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSH
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHH
Confidence 455689999999999999999999999999999988877788766543
No 270
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=34.72 E-value=52 Score=24.12 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=22.4
Q ss_pred HHHHhHhhcCHHHHHHHHHHHHccCCC
Q 000134 1120 ELLSNKKSGNWAEVFTSCEQALQMEPT 1146 (2096)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~ 1146 (2096)
....+...|++++|..+|+.+++..|+
T Consensus 7 ~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 7 LGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 345677889999999999999987775
No 271
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=34.49 E-value=1.2e+02 Score=39.56 Aligned_cols=66 Identities=12% Similarity=-0.058 Sum_probs=58.5
Q ss_pred CCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCh-----HHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1344 LGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAPN-----VHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1344 ~~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~~~-----~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
.+......|...+-.-.+.|+++.|..+..+|..+++.. +..-.|-.+.+.|+.++|+..|+++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345678889999999999999999999999998886543 378999999999999999999999986
No 272
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=34.04 E-value=2.4e+02 Score=31.89 Aligned_cols=46 Identities=9% Similarity=-0.031 Sum_probs=41.5
Q ss_pred hHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHH
Q 000134 1124 NKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVT 1169 (2096)
Q Consensus 1124 ~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~ 1169 (2096)
.-..|++++|...|+.+...+|.+.+.-.|+=-|++.+|+|...+.
T Consensus 45 ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~ 90 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIY 90 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHH
Confidence 3478999999999999999999999999999999999999987655
No 273
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=34.01 E-value=2e+03 Score=33.02 Aligned_cols=125 Identities=15% Similarity=0.173 Sum_probs=84.9
Q ss_pred HHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHHHHHHHHHhh
Q 000134 171 VIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFT 250 (2096)
Q Consensus 171 ~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (2096)
-+-.+|.|+++= ..-+...++.|-++|..+.-+||--|=+-++.++ +.. ...-. ...+..-+-..+.
T Consensus 799 li~~~la~~r~f--~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~iv---------e~D-p~vL~-~~dvq~~Vh~R~~ 865 (1692)
T KOG1020|consen 799 LIVFYLAHARSF--SQSFDPYLKLILSVLGENAIALRTKALKCLSMIV---------EAD-PSVLS-RPDVQEAVHGRLN 865 (1692)
T ss_pred HHHHHHHhhhHH--HHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHH---------hcC-hHhhc-CHHHHHHHHHhhc
Confidence 334445554421 1124457777788889899999988877777665 111 11111 1222222223333
Q ss_pred hcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhh
Q 000134 251 AADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFH 312 (2096)
Q Consensus 251 ~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~ 312 (2096)
+..-+ |.|+.|+-||+- +....|+...-.-++++..--+..+||==|...+..+|...
T Consensus 866 Dssas-VREAaldLvGrf---vl~~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~ 923 (1692)
T KOG1020|consen 866 DSSAS-VREAALDLVGRF---VLSIPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEET 923 (1692)
T ss_pred cchhH-HHHHHHHHHhhh---hhccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhC
Confidence 33334 999999999985 56689999999999999999999999999999999998765
No 274
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=33.67 E-value=81 Score=37.96 Aligned_cols=61 Identities=18% Similarity=0.237 Sum_probs=49.1
Q ss_pred HHHhHhhcCHHHHHHHHHHHHccCCCchhh---hhhHHHHHHhccChHHHHHHhhhhhccChhh
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQR---HSDVLNCLLNMCHLQAMVTHVDGLISRIPQY 1181 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~---~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~ 1181 (2096)
....-..|+|++|...|+..++..|.+... +..+-.|+.++++++....+.+......|+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~ 102 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH 102 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCC
Confidence 444557899999999999999999987544 3677788899999998888888777766654
No 275
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=33.44 E-value=3.4e+02 Score=33.67 Aligned_cols=53 Identities=19% Similarity=0.224 Sum_probs=44.2
Q ss_pred HHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhh
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDG 1173 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~g 1173 (2096)
..+.-..|+..+|...+..+++..|++.+.-.|+.+||.+.|+.+......+.
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 33445789999999999999999999999999999999999998765444443
No 276
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=33.30 E-value=7.4e+02 Score=31.12 Aligned_cols=168 Identities=14% Similarity=0.151 Sum_probs=105.8
Q ss_pred hHHHHHHHHHHHHHHHHhc--cccccchh---hHHHHHHHHhc---CCCcchhhhHHHHHHHHHhccCCCcchhhHHHHH
Q 000134 513 LSLQKQALKRIEILIEMIG--SHLTTYVP---KILVLLMHAIN---KESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQV 584 (2096)
Q Consensus 513 ~~~k~~~l~sl~~li~l~g--~~v~~~~p---qI~a~L~~aL~---~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i 584 (2096)
..+.--.+..++.+.|.+. .+...++| +|+--|-.+|+ -.+...-|+++-......+. ++.+..-+..-
T Consensus 22 ~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig---~~~L~~dl~i~ 98 (307)
T PF04118_consen 22 SSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIG---PDGLAQDLPIY 98 (307)
T ss_pred hhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcC---HHHHHhhcHHH
Confidence 4456677888999999888 34444444 46666777773 12455677888888777764 46666666767
Q ss_pred HHHhhhccccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcc-----cCCCCCC--hhhhHHHHHHHHHhcCCCCHHHHH
Q 000134 585 FAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIH-----EFPLLPS--IAALTEVNKAIQEARGPMTLKDQL 657 (2096)
Q Consensus 585 ~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~-----~lp~Lp~--ip~l~~v~~~l~~~r~~~~l~~~l 657 (2096)
...+.|++....- .++-+..+|++.-++.-...|...+. -+|.|.+ -+.++++.+.+...+...+..-..
T Consensus 99 ~~GLfpl~~~asi---~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~ 175 (307)
T PF04118_consen 99 SPGLFPLFSYASI---QVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFW 175 (307)
T ss_pred HHHHHHHHHHHHH---hhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHH
Confidence 7778888874432 24567777887777664445544433 2355553 123445556666666554444333
Q ss_pred HHHHhhccCCChhHHHHHHHHHHHHHhhcH
Q 000134 658 LAAVDGLNHENLNVRYMVVCELSKLLKLKS 687 (2096)
Q Consensus 658 ~~~~~~l~~en~~Vr~~aL~eL~~~L~~~~ 687 (2096)
+.+=..+- .|+.+|.-||.-|...+.+..
T Consensus 176 ~~lwl~ii-~sp~~Rl~al~~l~~~l~~~~ 204 (307)
T PF04118_consen 176 QCLWLCII-TSPSRRLGALNYLLRRLPKFQ 204 (307)
T ss_pred HHHHHHHh-cCcchhHHHHHHHHHhCCccc
Confidence 33223332 488999999999999887755
No 277
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=33.00 E-value=2.5e+02 Score=31.75 Aligned_cols=121 Identities=13% Similarity=0.137 Sum_probs=74.2
Q ss_pred ChhhHHHHHHHhhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHh-hcccHHHHHHHHHHHhHhhhhhh
Q 000134 144 DFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLL-LNKRKAIRDAFCTQIGYFLQDTV 222 (2096)
Q Consensus 144 ~~~~~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~-~~~~r~vR~a~~~~~~~~~~~~~ 222 (2096)
.-.+|.+-..++|-. .+.+-+-..+.-++-++..++.+++..-.++|++-+..++ .+....++++++.++..++....
T Consensus 22 ~l~~l~~ri~~LL~s-~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 22 ALHKLVTRINSLLQS-KSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHHHhCC-CChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 334566656666644 3455566777788888888888888888899998666666 44567789999999999762111
Q ss_pred hhhhccCcccccchhhHHHHHHHHHHhhhcCC-hhHHHHHHHHHHHHHhh
Q 000134 223 LSSLFLDENASSRSNELKLLDVIKLAFTAADD-PLILETLLESTAELMMA 271 (2096)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~i~eTll~~~~~i~~~ 271 (2096)
+-..-.+..-.+.+-++-.++...-+ +...++.|.+++.++..
T Consensus 101 ------~~p~l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 101 ------GKPTLTREIATPNLPKFIQSLLQLLQDSSCPETALDALATLLPH 144 (165)
T ss_pred ------CCCchHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 11111111114444444444433322 55777777777776553
No 278
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=32.99 E-value=4.1e+02 Score=31.88 Aligned_cols=43 Identities=16% Similarity=0.149 Sum_probs=24.0
Q ss_pred HhHhhcCHHHHHHHHHHHHccCCCch--hhhhhHHHHHHhccChHHH
Q 000134 1123 SNKKSGNWAEVFTSCEQALQMEPTSV--QRHSDVLNCLLNMCHLQAM 1167 (2096)
Q Consensus 1123 ~~E~~G~W~~A~~~YE~~Lq~~p~~~--~~~~glL~CL~~LGq~~~l 1167 (2096)
.|++.|.-+.|...|+++++..|++- -..-|+.=| ..|+++..
T Consensus 78 ~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC--~qg~~~eA 122 (250)
T COG3063 78 YYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC--AQGRPEEA 122 (250)
T ss_pred HHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH--hCCChHHH
Confidence 45666666666666666666666543 233455555 33455543
No 279
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=32.76 E-value=1.6e+02 Score=35.87 Aligned_cols=56 Identities=7% Similarity=0.039 Sum_probs=44.4
Q ss_pred hhcCHHHHHHHHHHHHccCCCch---hhhhhHHHHHHhccChHHHHHHhhhhhccChhh
Q 000134 1126 KSGNWAEVFTSCEQALQMEPTSV---QRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQY 1181 (2096)
Q Consensus 1126 ~~G~W~~A~~~YE~~Lq~~p~~~---~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~ 1181 (2096)
+.|+|++|...|+..++..|++. +.+..+=.++.+.|+++..+.+.+.+....|+.
T Consensus 155 ~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s 213 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS 213 (263)
T ss_pred hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 45889999999999999998873 566677788888899998888888777666653
No 280
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=32.71 E-value=6.6e+02 Score=29.16 Aligned_cols=86 Identities=15% Similarity=0.118 Sum_probs=54.6
Q ss_pred CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHH
Q 000134 1380 APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSR 1459 (2096)
Q Consensus 1380 ~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~Lllak 1459 (2096)
+++...+.|.-...+|+..+|+..++..+...|.. +...++.+.+|.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s---------------------------------~~a~~A~l~la~ 50 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNS---------------------------------PYAPQAQLMLAY 50 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTS---------------------------------TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---------------------------------hHHHHHHHHHHH
Confidence 35677889999999999999999999987654321 112334444444
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhccchH---HHHHHHHhhhHHH
Q 000134 1460 WIHYTGQKQKEDVITLYSRVRELQPMWE---KGYFYMAKYCDDV 1500 (2096)
Q Consensus 1460 Wl~~~~~~~~~~i~~~Y~~a~~l~~~we---K~~~~la~y~d~l 1500 (2096)
-.-..+ ...+.+..|++.++.+|+.+ .++|.+|.-+-+.
T Consensus 51 a~y~~~--~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 51 AYYKQG--DYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHHTT---HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHH
T ss_pred HHHHcC--CHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHh
Confidence 333333 35677888899999988754 5778787754444
No 281
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=32.53 E-value=2.8e+02 Score=37.96 Aligned_cols=139 Identities=15% Similarity=0.094 Sum_probs=93.9
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhccCChhHHHH
Q 000134 1043 KVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELL 1122 (2096)
Q Consensus 1043 ~~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~~sl~~qil 1122 (2096)
..+++.+-+.||.-..|+--+|.-. .++-.+.=|..+++.+.++=|.+..-. =....+
T Consensus 401 q~~laell~slGitksAl~I~Erle--------------------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~ 458 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLE--------------------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPR 458 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHH--------------------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcch
Confidence 4678899999999999999998742 345667788888888888887664322 112356
Q ss_pred HhHhhcCHHHHHHHHHHHHccCCC-chhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChhh
Q 000134 1123 SNKKSGNWAEVFTSCEQALQMEPT-SVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDL 1201 (2096)
Q Consensus 1123 ~~E~~G~W~~A~~~YE~~Lq~~p~-~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd~ 1201 (2096)
.|-..|+-..=++|||++.+.... +...|..+=.-...-+++.....+.++-..-+|-....|+..++ |||.+++|..
T Consensus 459 lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~-~ALqlek~q~ 537 (777)
T KOG1128|consen 459 LYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGC-AALQLEKEQA 537 (777)
T ss_pred hHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccH-HHHHHhhhHH
Confidence 788999999999999999875432 22222221111223477777777877765555555555665554 7899999965
Q ss_pred HHH
Q 000134 1202 MDE 1204 (2096)
Q Consensus 1202 l~~ 1204 (2096)
--+
T Consensus 538 av~ 540 (777)
T KOG1128|consen 538 AVK 540 (777)
T ss_pred HHH
Confidence 544
No 282
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=32.42 E-value=4.5e+02 Score=28.59 Aligned_cols=63 Identities=19% Similarity=0.143 Sum_probs=47.4
Q ss_pred CChhhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhc
Q 000134 632 PSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALING 696 (2096)
Q Consensus 632 p~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~~l~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~ 696 (2096)
|+.....++-..++.. ....++.++.+-+|++|.|+.|.+.||.=|..+.+.-...++..+.+
T Consensus 16 ~D~~~il~icd~I~~~--~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s 78 (133)
T cd03561 16 PDWALNLELCDLINLK--PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVAD 78 (133)
T ss_pred ccHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhh
Confidence 4444444555555432 46778999999999999999999999999999888876666665544
No 283
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=31.99 E-value=4.6e+02 Score=33.73 Aligned_cols=94 Identities=10% Similarity=0.075 Sum_probs=61.7
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHH--HhccCChhHHH----HHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHh
Q 000134 1087 EDVSFLMEIYSFLDEPDGLSGLAR--LHKSLSLQDEL----LSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLN 1160 (2096)
Q Consensus 1087 ~~~~~L~~IYa~LdEpDgl~Gi~~--~~~~~sl~~qi----l~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~ 1160 (2096)
..+..|.++|-+=+|--...-+.- .|-.+.--+-| -.|--+..|++|..++|++--..|+....|+-+-.|++.
T Consensus 593 ~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 593 AILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHh
Confidence 457788888877666544433321 12222222222 224556788888888888877888888888888889999
Q ss_pred ccChHHHHHHhhhhhccChh
Q 000134 1161 MCHLQAMVTHVDGLISRIPQ 1180 (2096)
Q Consensus 1161 LGq~~~ll~~~~gl~~~~p~ 1180 (2096)
.|.|+.............|+
T Consensus 673 sgnyqka~d~yk~~hrkfpe 692 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRKFPE 692 (840)
T ss_pred cccHHHHHHHHHHHHHhCcc
Confidence 99888777666655555553
No 284
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=31.82 E-value=3.4e+02 Score=29.44 Aligned_cols=76 Identities=16% Similarity=0.231 Sum_probs=49.6
Q ss_pred CHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhcc-------ccc
Q 000134 652 TLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESR-------TVV 724 (2096)
Q Consensus 652 ~l~~~l~~~~~~l~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~-------t~~ 724 (2096)
+..+-...+.+|+++.++.|++-+|+=|..++..-.+.+...+.-. +..|++ |..+.. ...
T Consensus 35 ~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~--------~~~Ik~----~~~f~g~~Dp~~Gd~~ 102 (122)
T cd03572 35 SCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRN--------SAQIRE----CANYKGPPDPLKGDSL 102 (122)
T ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHh--------HHHHHH----HHHcCCCCCcccCcch
Confidence 4556667788999999999999999999988887655555444321 123333 332221 224
Q ss_pred hhhHHHHHHHhhccc
Q 000134 725 GQKLKLVCADCLGAL 739 (2096)
Q Consensus 725 ~~~I~~lca~CLG~I 739 (2096)
++.|+..+-||+..|
T Consensus 103 ~~~VR~~A~El~~~i 117 (122)
T cd03572 103 NEKVREEAQELIKAI 117 (122)
T ss_pred hHHHHHHHHHHHHHH
Confidence 467777777777665
No 285
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.80 E-value=3.7e+02 Score=32.34 Aligned_cols=114 Identities=20% Similarity=0.211 Sum_probs=76.5
Q ss_pred cCcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----C----CChHHHHHHHHHHHcCCchHHHHHHHHHhhc
Q 000134 1339 FGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQAS----G----APNVHMEKAKLLWSTRRSDGAIAELQQNLLN 1410 (2096)
Q Consensus 1339 l~~~~~~~~~~~~WL~~AklARKag~~~~A~~all~a~~~----~----~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~ 1410 (2096)
|+-++-.++-+++..+-|..-|-+..++.|-.|.++|..+ + ..+.++|.+|.+ ++++..+|+++|+.+|+-
T Consensus 24 fgg~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieI 102 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEI 102 (288)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHH
Confidence 4333344577888999999999999999999999988654 1 234677888765 456999999999998862
Q ss_pred CCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Q 000134 1411 KPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQP 1484 (2096)
Q Consensus 1411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~ 1484 (2096)
.. ..+ .-+..|+-+.-+|+... +.....+..+..|.+|.+...
T Consensus 103 yt----~~G--------------------------rf~~aAk~~~~iaEiyE-sdl~d~ekaI~~YE~Aae~yk 145 (288)
T KOG1586|consen 103 YT----DMG--------------------------RFTMAAKHHIEIAEIYE-SDLQDFEKAIAHYEQAAEYYK 145 (288)
T ss_pred HH----hhh--------------------------HHHHHHhhhhhHHHHHh-hhHHHHHHHHHHHHHHHHHHc
Confidence 10 000 11234666666777653 333346677777777776654
No 286
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=31.57 E-value=1.9e+02 Score=29.48 Aligned_cols=107 Identities=9% Similarity=0.046 Sum_probs=60.4
Q ss_pred HHHhhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcc
Q 000134 152 YFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDEN 231 (2096)
Q Consensus 152 ~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~ 231 (2096)
+.++|.++. .+++..++..|..+..+.......-....-++-+-.+|.+++..||..++..+..+.++.- .
T Consensus 12 l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~--------~ 82 (120)
T cd00020 12 LVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE--------D 82 (120)
T ss_pred HHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH--------H
Confidence 556666554 6788888899999888854221100111222333334589999999999999999762221 0
Q ss_pred cccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHH
Q 000134 232 ASSRSNELKLLDVIKLAFTAADDPLILETLLESTAEL 268 (2096)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i 268 (2096)
....-....++..+-+.+. ..|..+++..+-+++.+
T Consensus 83 ~~~~~~~~g~l~~l~~~l~-~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLD-SSNEDIQKNATGALSNL 118 (120)
T ss_pred HHHHHHHCCChHHHHHHHh-cCCHHHHHHHHHHHHHh
Confidence 0000000113444445343 33666777777776665
No 287
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=31.56 E-value=1.3e+03 Score=30.08 Aligned_cols=72 Identities=18% Similarity=0.391 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHhccc-cccchhhHHHHHHHHhc--CCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhh
Q 000134 515 LQKQALKRIEILIEMIGSH-LTTYVPKILVLLMHAIN--KESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIP 590 (2096)
Q Consensus 515 ~k~~~l~sl~~li~l~g~~-v~~~~pqI~a~L~~aL~--~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip 590 (2096)
.|-.++.++.-+++-+-.. +-+..|+|+=.|..+|. .++++..++.+-..++.. .|+.+.++++.++..++.
T Consensus 339 ~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~----~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 339 IKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE----APELISEHLSSLIPRLLK 413 (415)
T ss_pred hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc----CHHHHHHHHHHHHHHHHh
Confidence 6778899999999987763 55778888888898886 344667777776666663 356788888888777754
No 288
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=31.43 E-value=30 Score=46.11 Aligned_cols=25 Identities=40% Similarity=0.549 Sum_probs=22.7
Q ss_pred ccCCCCCceeeecCCCcEEeeecccc
Q 000134 1932 LGDRHGENILFDSTTGDCVHVDFSCL 1957 (2096)
Q Consensus 1932 LGDRH~eNILld~~tG~vvHIDF~~~ 1957 (2096)
=+|=||+||+++. .|+++-+|||++
T Consensus 288 HaDpHpGNi~v~~-~g~i~~lDfGi~ 312 (517)
T COG0661 288 HADPHPGNILVRS-DGRIVLLDFGIV 312 (517)
T ss_pred ccCCCccceEEec-CCcEEEEcCcce
Confidence 4899999999995 699999999886
No 289
>TIGR03724 arch_bud32 Kae1-associated kinase Bud32. Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.
Probab=30.96 E-value=34 Score=39.03 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.8
Q ss_pred ccCCCCCceeeecCCCcEEeeecccc
Q 000134 1932 LGDRHGENILFDSTTGDCVHVDFSCL 1957 (2096)
Q Consensus 1932 LGDRH~eNILld~~tG~vvHIDF~~~ 1957 (2096)
=||-||+||+++ .|++.-||||+.
T Consensus 113 H~Dl~~~Nil~~--~~~~~liDfg~a 136 (199)
T TIGR03724 113 HGDLTTSNIIVR--DDKLYLIDFGLG 136 (199)
T ss_pred cCCCCcceEEEE--CCcEEEEECCCC
Confidence 589999999998 899999999864
No 290
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=30.81 E-value=59 Score=29.82 Aligned_cols=30 Identities=23% Similarity=0.479 Sum_probs=24.5
Q ss_pred HHHhHhhcCHHHHHHHHHHHHccCCCchhh
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQR 1150 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~ 1150 (2096)
++.|-+.|+++.|..+.+..|+.+|+|...
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 456889999999999999999999998543
No 291
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=30.29 E-value=1.4e+02 Score=34.28 Aligned_cols=52 Identities=10% Similarity=0.105 Sum_probs=32.5
Q ss_pred HHHhHhhcCHHHHHHHHHHHHccCCCc---hhhhhhHHHHHHhccChHHHHHHhh
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQMEPTS---VQRHSDVLNCLLNMCHLQAMVTHVD 1172 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~---~~~~~glL~CL~~LGq~~~ll~~~~ 1172 (2096)
.--|.+.|+.+.|+.+|+++.+...+. ++..+.+++-....|.|..+.++++
T Consensus 43 ~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ 97 (177)
T PF10602_consen 43 ADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIE 97 (177)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 345789999999999999866543221 2333455555555666665555443
No 292
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=30.23 E-value=2.7e+02 Score=37.05 Aligned_cols=97 Identities=16% Similarity=0.294 Sum_probs=63.0
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhccCChhHHHHHh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSN 1124 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~~sl~~qil~~ 1124 (2096)
.++-.|++-+.|..|+.||+......+...+ +.++-.+.+..|- ..+
T Consensus 419 Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~-----e~~~w~p~~~NLG----------------------------H~~ 465 (611)
T KOG1173|consen 419 ELGVVAYTYEEYPEALKYFQKALEVIKSVLN-----EKIFWEPTLNNLG----------------------------HAY 465 (611)
T ss_pred hhhheeehHhhhHHHHHHHHHHHHHhhhccc-----cccchhHHHHhHH----------------------------HHH
Confidence 4677788899999999999987643322111 0011112222222 235
Q ss_pred HhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhh
Q 000134 1125 KKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGL 1174 (2096)
Q Consensus 1125 E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl 1174 (2096)
++.++..+|..+|+++|...|.+.+.+.++==|+.-+|.++...++...-
T Consensus 466 Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 466 RKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 67778888888888888888888877766666666778887777766543
No 293
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=30.11 E-value=3e+02 Score=33.79 Aligned_cols=103 Identities=17% Similarity=0.183 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHH-cCChHHHHHHHHHHhhc--CCChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccc
Q 000134 1349 GNCWLQYAKLCRL-AGHYETATRAILEAQAS--GAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSIT 1425 (2096)
Q Consensus 1349 ~~~WL~~AklARK-ag~~~~A~~all~a~~~--~~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~ 1425 (2096)
-..|+.+|.+=.. ++..+.|.+-...+.+. ..+...+.+++.|-..|+...|=..+++++..++.+
T Consensus 35 ~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~----------- 103 (280)
T PF05843_consen 35 YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKE----------- 103 (280)
T ss_dssp THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCH-----------
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCch-----------
Confidence 3579999999877 67777788877776554 356788999999999999999999999987642210
Q ss_pred ccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccch
Q 000134 1426 SLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMW 1486 (2096)
Q Consensus 1426 ~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~w 1486 (2096)
. .....+-.+.+|=..-| +.+.+.+.++.+.++.+.-
T Consensus 104 ----------------~------~~~~iw~~~i~fE~~~G--dl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 104 ----------------K------QSKKIWKKFIEFESKYG--DLESVRKVEKRAEELFPED 140 (280)
T ss_dssp ----------------H------HCHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHTTTS
T ss_pred ----------------h------HHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhhhh
Confidence 0 01123333333333344 5778888888888888763
No 294
>PHA02768 hypothetical protein; Provisional
Probab=30.05 E-value=20 Score=33.00 Aligned_cols=16 Identities=19% Similarity=0.497 Sum_probs=13.6
Q ss_pred hhcccccccCCccccc
Q 000134 106 LENFWCSKCDTNVVHN 121 (2096)
Q Consensus 106 ~~~~~c~~c~~~~~~~ 121 (2096)
|-||.|++||+++.+.
T Consensus 3 ~~~y~C~~CGK~Fs~~ 18 (55)
T PHA02768 3 LLGYECPICGEIYIKR 18 (55)
T ss_pred ccccCcchhCCeeccH
Confidence 5699999999988664
No 295
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=29.75 E-value=5.4e+02 Score=31.35 Aligned_cols=151 Identities=15% Similarity=0.058 Sum_probs=99.9
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~ 1424 (2096)
+..+. .++++.-+-.|.-+.+..++-++....+ +.+.-+++|.+-..|+...|+..++++..-.
T Consensus 65 ~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~------------- 130 (257)
T COG5010 65 EDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA------------- 130 (257)
T ss_pred chHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-------------
Confidence 33445 7788888888888888877777544333 3455569999999999999999999875411
Q ss_pred cccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHH
Q 000134 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDA 1504 (2096)
Q Consensus 1425 ~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~~ 1504 (2096)
|. -++++-.+|=-+++.|+ .++....|.+|.++.+.-.+..--+|-.|. +
T Consensus 131 ------p~-----------------d~~~~~~lgaaldq~Gr--~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~--L--- 180 (257)
T COG5010 131 ------PT-----------------DWEAWNLLGAALDQLGR--FDEARRAYRQALELAPNEPSIANNLGMSLL--L--- 180 (257)
T ss_pred ------CC-----------------ChhhhhHHHHHHHHccC--hhHHHHHHHHHHHhccCCchhhhhHHHHHH--H---
Confidence 11 15567777777777776 788889999999999987766666665542 1
Q ss_pred HhhhhhcccCCcchhhhhchHHHHHHHHHHhhcc--CCcchhhhHHHHHHhhhhcC
Q 000134 1505 RKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHR--GHKNLFQALPRLLTLWFDFG 1558 (2096)
Q Consensus 1505 ~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~--g~~~~~q~lpRlLtLWl~~g 1558 (2096)
+.+. ..+..-.+++-.. .+.-+.|.+.+++.+|=++.
T Consensus 181 ~gd~-----------------~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 181 RGDL-----------------EDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred cCCH-----------------HHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChH
Confidence 1110 1122222222222 23467899999999995544
No 296
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=29.70 E-value=77 Score=42.41 Aligned_cols=62 Identities=26% Similarity=0.349 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHhcc-ccccchhhHHHHHHHHhc----CCCcchhhhHHHHHHHHHhccCCCc
Q 000134 514 SLQKQALKRIEILIEMIGS-HLTTYVPKILVLLMHAIN----KESLQCEGLSVLHFFIEQLSRVSPS 575 (2096)
Q Consensus 514 ~~k~~~l~sl~~li~l~g~-~v~~~~pqI~a~L~~aL~----~~~L~~~~l~~W~~fv~~L~~~~~~ 575 (2096)
..|.+.|+.+.+|.-.+|. .....+|.|.-.|...+. .+++...-++|-..-.+.|....|+
T Consensus 283 ~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~ 349 (556)
T PF05918_consen 283 DRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSPN 349 (556)
T ss_dssp -HHHHHHHHHHHHHTT----THHHHHHHHHHHHHTTS----------HHHHHHHHHHHHHHHTT-TH
T ss_pred HHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCcc
Confidence 4678999999999999997 567777888888887763 3456666666666655666554443
No 297
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=29.60 E-value=3.7e+02 Score=36.05 Aligned_cols=145 Identities=20% Similarity=0.175 Sum_probs=101.5
Q ss_pred hhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc-----C--C---ChHHHHHHHHHHHc
Q 000134 1325 LWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQAS-----G--A---PNVHMEKAKLLWST 1394 (2096)
Q Consensus 1325 ~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~AklARKag~~~~A~~all~a~~~-----~--~---~~~~iE~AKLLW~~ 1394 (2096)
+..-++-|++|..+++..+ ..++.+....|.+-=+.|.+.-|...+.+|... + . +....+.|-++-.+
T Consensus 261 v~ly~~AL~i~e~~~G~~h--~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~ 338 (508)
T KOG1840|consen 261 VNLYEEALTIREEVFGEDH--PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSM 338 (508)
T ss_pred HHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHh
Confidence 3556778899999998764 578889999999999999999999998888643 2 1 23567888889999
Q ss_pred CCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHH
Q 000134 1395 RRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVIT 1474 (2096)
Q Consensus 1395 g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~ 1474 (2096)
++.++|+..++.+++-.. ...| +.+..+|+.+--+|+-+...|+ .++..+
T Consensus 339 ~~~Eea~~l~q~al~i~~-~~~g---------------------------~~~~~~a~~~~nl~~l~~~~gk--~~ea~~ 388 (508)
T KOG1840|consen 339 NEYEEAKKLLQKALKIYL-DAPG---------------------------EDNVNLAKIYANLAELYLKMGK--YKEAEE 388 (508)
T ss_pred cchhHHHHHHHHHHHHHH-hhcc---------------------------ccchHHHHHHHHHHHHHHHhcc--hhHHHH
Confidence 999999999998876211 0000 1223446666666665555555 566778
Q ss_pred HHHHHHHhccch-HHHHHHHHhhhHHHH
Q 000134 1475 LYSRVRELQPMW-EKGYFYMAKYCDDVL 1501 (2096)
Q Consensus 1475 ~Y~~a~~l~~~w-eK~~~~la~y~d~l~ 1501 (2096)
.|++|++....- ++-++..|.++..+-
T Consensus 389 ~~k~ai~~~~~~~~~~~~~~~~~l~~la 416 (508)
T KOG1840|consen 389 LYKKAIQILRELLGKKDYGVGKPLNQLA 416 (508)
T ss_pred HHHHHHHHHHhcccCcChhhhHHHHHHH
Confidence 888888776543 334666666666553
No 298
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=29.41 E-value=89 Score=44.45 Aligned_cols=121 Identities=21% Similarity=0.183 Sum_probs=77.8
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhC-CCCcchHHHHHHHHHHHhhhhccccccccc
Q 000134 243 DVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLD-NPHVTVRMNASRLIRKSCFFHLKGGCELLV 321 (2096)
Q Consensus 243 ~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~-~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~ 321 (2096)
-.+++....-.||.++-+.-.++|..|- +..+..-..+=+|+.-|- +|++.||.+++--+..+|-.-.. |
T Consensus 925 ~e~c~n~~~~sdp~Lq~AAtLaL~klM~---iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpn----l-- 995 (1251)
T KOG0414|consen 925 VEGCRNPGLFSDPELQAAATLALGKLMC---ISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN----L-- 995 (1251)
T ss_pred HHHhcCCCcCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhccc----c--
Confidence 3334333345889999999999999875 256666677777888887 99999999988777666433211 1
Q ss_pred chhhhhhhhhhHHHHHHhcCchHHHHHHHHHHhCCChHHHHHhhcccccchhhhccccChhHHHHHHHHHHHcCC
Q 000134 322 SKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVKKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNT 396 (2096)
Q Consensus 322 ~~~~~~~~~l~~~~~~~l~~rp~~~~~~~e~llg~~~~~fL~~~~~~~LP~LVl~~~~~~~~~~~i~~ia~~~~~ 396 (2096)
+ ++..+++-.+|.---.++|.-| -.||-|||+.- .+.+++.|-+.|.++-.
T Consensus 996 -----i-e~~T~~Ly~rL~D~~~~vRkta----------------~lvlshLILnd--miKVKGql~eMA~cl~D 1046 (1251)
T KOG0414|consen 996 -----I-EPWTEHLYRRLRDESPSVRKTA----------------LLVLSHLILND--MIKVKGQLSEMALCLED 1046 (1251)
T ss_pred -----c-chhhHHHHHHhcCccHHHHHHH----------------HHHHHHHHHhh--hhHhcccHHHHHHHhcC
Confidence 1 2223444444444444455544 44778888873 23355678888776553
No 299
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=28.88 E-value=86 Score=25.09 Aligned_cols=28 Identities=21% Similarity=0.144 Sum_probs=23.3
Q ss_pred HHHHHhhccCCChhHHHHHHHHHHHHHh
Q 000134 657 LLAAVDGLNHENLNVRYMVVCELSKLLK 684 (2096)
Q Consensus 657 l~~~~~~l~~en~~Vr~~aL~eL~~~L~ 684 (2096)
+..+.+.++++++.||..|..-|..+.+
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 5678899999999999999999887754
No 300
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=28.84 E-value=2.5e+02 Score=32.42 Aligned_cols=63 Identities=11% Similarity=0.185 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcc
Q 000134 1469 KEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2096)
Q Consensus 1469 ~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~ 1542 (2096)
.++.++.|.+|+.++|+--.+++.||.-|-.+-+- .. +......+-..+..+|-++....+.+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l-~~----------d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL-TP----------DTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh-cC----------ChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 56788999999999999999999999876554321 00 11112246678999999999877654
No 301
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=28.83 E-value=1.2e+02 Score=30.61 Aligned_cols=53 Identities=17% Similarity=0.234 Sum_probs=44.1
Q ss_pred CCCChHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHhc--CCCcchhhhHH
Q 000134 509 HAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAIN--KESLQCEGLSV 561 (2096)
Q Consensus 509 ~~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL~--~~~L~~~~l~~ 561 (2096)
+..+...|...|.++..|+.-.|..+.+.=|-|...|..+.. .+++-..|+++
T Consensus 28 ~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~ 82 (86)
T PF09324_consen 28 NNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQI 82 (86)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 445678899999999999999999999999999999998885 55566666554
No 302
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=28.81 E-value=5.7e+02 Score=28.29 Aligned_cols=63 Identities=19% Similarity=0.191 Sum_probs=46.7
Q ss_pred CChhhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhc
Q 000134 632 PSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALING 696 (2096)
Q Consensus 632 p~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~~l~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~ 696 (2096)
|+....-++-..++. .....++.++.+-+|++|.|+.|.+.||.=|..+.+.....+|.-+.+
T Consensus 20 ~dw~~ileicD~In~--~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas 82 (142)
T cd03569 20 PDLASILEICDMIRS--KDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVAS 82 (142)
T ss_pred cCHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhh
Confidence 444444445555543 234689999999999999999999999999998888766666765544
No 303
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=28.72 E-value=1.7e+02 Score=30.94 Aligned_cols=74 Identities=18% Similarity=0.182 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHccCCCchhhhhhHHH--HHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChhhHHHhhc
Q 000134 1130 WAEVFTSCEQALQMEPTSVQRHSDVLN--CLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMDEYLS 1207 (2096)
Q Consensus 1130 W~~A~~~YE~~Lq~~p~~~~~~~glL~--CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd~l~~~l~ 1207 (2096)
-++|.+.++= |...++ .+.-.-+|| .|.|-|+|+..+. .+..+..| ++.|+.+=|+|++|-=+.++.|+.
T Consensus 22 H~EA~tIa~w-L~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl--~~~~~~~p----dL~p~~AL~a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 22 HQEANTIADW-LEQEGE-MEEVVALIRLSSLMNRGDYQEALL--LPQCHCYP----DLEPWAALCAWKLGLASALESRLT 93 (116)
T ss_dssp HHHHHHHHHH-HHHTTT-THHHHHHHHHHHHHHTT-HHHHHH--HHTTS--G----GGHHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHH-HHhCCc-HHHHHHHHHHHHHHhhHHHHHHHH--hcccCCCc----cHHHHHHHHHHhhccHHHHHHHHH
Confidence 3556666554 232332 122223333 4678899998844 34444444 456788889999999999999998
Q ss_pred ccCc
Q 000134 1208 GADE 1211 (2096)
Q Consensus 1208 ~~~~ 1211 (2096)
....
T Consensus 94 rla~ 97 (116)
T PF09477_consen 94 RLAS 97 (116)
T ss_dssp HHCT
T ss_pred HHHh
Confidence 6554
No 304
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=28.12 E-value=6.9e+02 Score=26.18 Aligned_cols=75 Identities=16% Similarity=0.149 Sum_probs=53.7
Q ss_pred HHhhcccCCCCCChhhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhcc
Q 000134 621 LKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGE 697 (2096)
Q Consensus 621 L~~~i~~lp~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~~l~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e 697 (2096)
+.+.-.+-+.=|+-+.+.++-..++.. .....+-...+.+|++|.|+.|++.||.=|..+++.-.+.++..+.+.
T Consensus 5 v~~AT~~~~~~p~~~~i~~i~d~~~~~--~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~ 79 (115)
T cd00197 5 VEKATSNENMGPDWPLIMEICDLINET--NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASN 79 (115)
T ss_pred HHHHcCCCCCCCCHHHHHHHHHHHHCC--CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHh
Confidence 334444444456655556565555432 345678888999999999999999999999999998877777665543
No 305
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=27.76 E-value=9e+02 Score=28.05 Aligned_cols=162 Identities=19% Similarity=0.183 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHH-hHHHHHhhcccCCCCCChhhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHH
Q 000134 603 LNKVVKILEDLVLK-NRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSK 681 (2096)
Q Consensus 603 ~~~~~~il~~Li~~-n~~~L~~~i~~lp~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~~l~~en~~Vr~~aL~eL~~ 681 (2096)
+.-|...|..|+.. .+..+..|-.. +||+. ..+......++. .--+.+-++.||..|+.-|..
T Consensus 3 R~~Al~~L~al~k~~~~r~l~~yW~~--llP~~--------~~~~~~~~~sLl------t~il~Dp~~kvR~aA~~~l~~ 66 (182)
T PF13251_consen 3 RQAALQCLQALAKSTDKRSLFGYWPA--LLPDS--------VLQGRPATPSLL------TCILKDPSPKVRAAAASALAA 66 (182)
T ss_pred hHHHHHHHHHHHHhcCCceeHhhHHH--HCCCC--------CCcCCCCCcchh------HHHHcCCchhHHHHHHHHHHH
Confidence 55677788777766 44444444333 35664 111222223332 223456788999999999999
Q ss_pred HHhhcHHHHHHHHhccCCC----C-----chhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhcccCccCccccccccc
Q 000134 682 LLKLKSEDVTALINGEACS----D-----LDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALGAVDPAKVKGFSC 752 (2096)
Q Consensus 682 ~L~~~~~~l~~~~~~e~~~----~-----~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IGalDp~r~~~~~~ 752 (2096)
+|+.-+.++...--.+.+. . ..+|-+|=+.|+......++ ......+-+||+.+--.=|
T Consensus 67 lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~----~~~l~q~lK~la~Lv~~tP-------- 134 (182)
T PF13251_consen 67 LLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKS----PPVLTQLLKCLAVLVQATP-------- 134 (182)
T ss_pred HHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccc----cHHHHHHHHHHHHHHccCC--------
Confidence 9999888776544222221 1 24566666777777766543 3567788899997644333
Q ss_pred ccccccccChhhHHHHHHHHHHHHHHcCCChhhHhHHHHHHHHHHH
Q 000134 753 QRFKIECSDDDLIFELIDKHLARAFRAAPDTIIQDSAALAIQELLK 798 (2096)
Q Consensus 753 ~~~~~~~~~~~f~~~ll~~~Lv~af~s~~dt~~Q~~~A~AiQElLk 798 (2096)
...-..+++-.++.. ++++....|+..+.....+|--++.
T Consensus 135 ----Y~rL~~~ll~~~v~~--v~~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 135 ----YHRLPPGLLTEVVTQ--VRPLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred ----hhhcCHhHHHHHHHH--HHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 223346777777765 6788888999888877656555554
No 306
>PLN02789 farnesyltranstransferase
Probab=27.06 E-value=4.5e+02 Score=33.12 Aligned_cols=56 Identities=11% Similarity=0.067 Sum_probs=35.2
Q ss_pred HhhcC--HHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChh
Q 000134 1125 KKSGN--WAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ 1180 (2096)
Q Consensus 1125 E~~G~--W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~ 1180 (2096)
++.|+ +.+++.+++.+++.+|.|...-...--++..+|.|+..+.+++.++...|.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~ 174 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR 174 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC
Confidence 34554 366777777777777777665554455566667777776666665554443
No 307
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=27.04 E-value=1.1e+03 Score=34.57 Aligned_cols=43 Identities=21% Similarity=0.173 Sum_probs=27.3
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHHHHhhc------HHHHHHHHhccC
Q 000134 656 QLLAAVDGLNHENLNVRYMVVCELSKLLKLK------SEDVTALINGEA 698 (2096)
Q Consensus 656 ~l~~~~~~l~~en~~Vr~~aL~eL~~~L~~~------~~~l~~~~~~e~ 698 (2096)
.+..|..|+..-|+.||..+|+=..++.++| +.++-.++.|..
T Consensus 360 ~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl 408 (1251)
T KOG0414|consen 360 LLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRL 408 (1251)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhccc
Confidence 4566777777777777777777777766543 344555555543
No 308
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=26.91 E-value=1.2e+02 Score=35.30 Aligned_cols=62 Identities=15% Similarity=0.218 Sum_probs=45.3
Q ss_pred HHHHhHhhcCHHHHHHHHHHHHccCCCch---hhhhhHHHHHHhccChHHHHHHhhhhhccChhh
Q 000134 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSV---QRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQY 1181 (2096)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~---~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~ 1181 (2096)
+...+-..|+|.+|...|+......|.+- +.++.+..|+.+.|+|+......+.+....|+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~ 75 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS 75 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 45667789999999999999999888754 456778888888899888877777766666643
No 309
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=26.58 E-value=1.6e+03 Score=29.60 Aligned_cols=115 Identities=10% Similarity=0.110 Sum_probs=64.3
Q ss_pred hhHHHHHHHhhcccCccchhhHHHHHHHHHHccCCc--hhhhh----hhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhh
Q 000134 146 SFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTR--DVLLK----TRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQ 219 (2096)
Q Consensus 146 ~~~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~--~~~~~----~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~ 219 (2096)
+..-.+|.++|.+-+-+++.-.+..-+..+|.-.+. ....+ ....|..=+. +|.+.|..+-..++.-+..++.
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~-lL~~~d~~i~~~a~~iLt~l~~ 130 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFN-LLNRQDQFIVHMSFSILAKLAC 130 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHH-HHcCCchhHHHHHHHHHHHHHh
Confidence 556677888887755555443333333333322210 00000 0122332233 4477888888888888877662
Q ss_pred hhhhhhhccCccc-ccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHh
Q 000134 220 DTVLSSLFLDENA-SSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMM 270 (2096)
Q Consensus 220 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~ 270 (2096)
.+.. ..+.....++.-+...+....++..+.+++-+++.+.+
T Consensus 131 ---------~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~ 173 (429)
T cd00256 131 ---------FGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR 173 (429)
T ss_pred ---------cCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC
Confidence 2211 22233344666777777766677788888988888754
No 310
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=26.40 E-value=1.1e+02 Score=32.89 Aligned_cols=28 Identities=29% Similarity=0.463 Sum_probs=22.7
Q ss_pred HHHhhccCCChhHHHHHHHHHHHHHhhc
Q 000134 659 AAVDGLNHENLNVRYMVVCELSKLLKLK 686 (2096)
Q Consensus 659 ~~~~~l~~en~~Vr~~aL~eL~~~L~~~ 686 (2096)
..++-++|+|+.|+++||..+..++..+
T Consensus 90 ~vM~Lm~h~d~eVr~eAL~avQklm~~~ 117 (119)
T PF11698_consen 90 RVMELMNHEDPEVRYEALLAVQKLMVNN 117 (119)
T ss_dssp HHHHHTS-SSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 4567778999999999999999887654
No 311
>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional
Probab=26.34 E-value=40 Score=40.27 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.2
Q ss_pred cCCCCCceeeecCCCcEEeeecccc
Q 000134 1933 GDRHGENILFDSTTGDCVHVDFSCL 1957 (2096)
Q Consensus 1933 GDRH~eNILld~~tG~vvHIDF~~~ 1957 (2096)
||=||+||+++. .| +.=||||+.
T Consensus 159 ~Dikp~Nili~~-~g-i~liDfg~~ 181 (232)
T PRK10359 159 GDPHKGNFIVSK-NG-LRIIDLSGK 181 (232)
T ss_pred CCCChHHEEEeC-CC-EEEEECCCc
Confidence 799999999984 67 999999865
No 312
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.31 E-value=1.4e+02 Score=36.33 Aligned_cols=63 Identities=14% Similarity=0.210 Sum_probs=49.1
Q ss_pred hhHHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHH-HHHhhhhhccCh
Q 000134 1117 LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAM-VTHVDGLISRIP 1179 (2096)
Q Consensus 1117 l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~l-l~~~~gl~~~~p 1179 (2096)
+..|+..|-..|||++|++.-+.+|.++++..+...+++.|-+-+|--..+ -.+...+....|
T Consensus 210 lnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p 273 (299)
T KOG3081|consen 210 LNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHP 273 (299)
T ss_pred HccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Confidence 445677788999999999999999999999999999999999888876433 334444444444
No 313
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=26.00 E-value=38 Score=45.44 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=22.4
Q ss_pred cccCCCCCceeeecCCC----cEEeeecccc
Q 000134 1931 GLGDRHGENILFDSTTG----DCVHVDFSCL 1957 (2096)
Q Consensus 1931 GLGDRH~eNILld~~tG----~vvHIDF~~~ 1957 (2096)
-=+|=||+||+++. +| +++-+|||++
T Consensus 282 fHaDpHPGNIlv~~-~g~~~~~i~llDFGiv 311 (537)
T PRK04750 282 FHADMHPGNIFVSY-DPPENPRYIALDFGIV 311 (537)
T ss_pred eeCCCChHHeEEec-CCCCCCeEEEEecceE
Confidence 45899999999985 55 9999999986
No 314
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.94 E-value=1.6e+03 Score=30.11 Aligned_cols=143 Identities=21% Similarity=0.153 Sum_probs=89.3
Q ss_pred HHhhcccCccchhhHHHHHHHHHHccCC--chhhhhhhhHHHHHHHHHhhcccH--HHHHHHHHHHhHhhhhhhhhhhcc
Q 000134 153 FEFLYDESSEEVQLSCVRVIRRILVHGT--RDVLLKTRSEWIKCIEFLLLNKRK--AIRDAFCTQIGYFLQDTVLSSLFL 228 (2096)
Q Consensus 153 ~~~l~~~~~~~v~~~~~~~l~~il~h~~--~~~~~~~~~~w~~~~~~~~~~~~r--~vR~a~~~~~~~~~~~~~~~~~~~ 228 (2096)
|-.|+..++.+|+==++-+|..|..|++ +|..++. + -+.-|-.++..+++ -+|-+. -+ |+-++.
T Consensus 157 fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~-g-~l~pLl~~l~~~~~~~~lRn~t-W~---------LsNlcr 224 (514)
T KOG0166|consen 157 FIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSC-G-ALDPLLRLLNKSDKLSMLRNAT-WT---------LSNLCR 224 (514)
T ss_pred HHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhh-c-chHHHHHHhccccchHHHHHHH-HH---------HHHHHc
Confidence 5566667888888778999999999988 5543331 0 11223334455554 555444 33 444556
Q ss_pred Ccc-cccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHH-----HHHHHHHHhhCCCCcchHHHHH
Q 000134 229 DEN-ASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFL-----FLLILLVEQLDNPHVTVRMNAS 302 (2096)
Q Consensus 229 ~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~-----~~l~~Li~~L~~~n~~v~~~A~ 302 (2096)
+.. .+.-.....+|--+.. +....|+.|+.-..-+++-+ +|...|..- -+.=.||+.|+|+++.+..-|.
T Consensus 225 gk~P~P~~~~v~~iLp~L~~-ll~~~D~~Vl~Da~WAlsyL---sdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaL 300 (514)
T KOG0166|consen 225 GKNPSPPFDVVAPILPALLR-LLHSTDEEVLTDACWALSYL---TDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPAL 300 (514)
T ss_pred CCCCCCcHHHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHH---hcCChHHHHHHHHccchHHHHHHHcCCCcccccHHH
Confidence 553 2333444566666655 66678887876666677766 333333321 1234599999999999998898
Q ss_pred HHHHHHhhh
Q 000134 303 RLIRKSCFF 311 (2096)
Q Consensus 303 ~~i~~l~~~ 311 (2096)
+-|=+++..
T Consensus 301 RaiGNIvtG 309 (514)
T KOG0166|consen 301 RAIGNIVTG 309 (514)
T ss_pred hhccceeec
Confidence 888777433
No 315
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=25.75 E-value=4.6e+02 Score=32.65 Aligned_cols=118 Identities=19% Similarity=0.252 Sum_probs=72.4
Q ss_pred ccCCChhhHHHHHHHhhcc--------cCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHH
Q 000134 140 NFHSDFSFLLNIYFEFLYD--------ESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFC 211 (2096)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~--------~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~ 211 (2096)
..-.+-+.+.-.+-.|=++ +.-.|-|--||.+|-|+++---+- -+. -+..--++.+|-++|..|..-+|
T Consensus 27 kealdlfeLpqiaaaLqldpdifgfeNenhrekttlcVscLERLfkakega-hla--pnlmpdLQrGLiaddasVKiLac 103 (524)
T KOG4413|consen 27 KEALDLFELPQIAAALQLDPDIFGFENENHREKTTLCVSCLERLFKAKEGA-HLA--PNLMPDLQRGLIADDASVKILAC 103 (524)
T ss_pred HHhcccchhHHHHHHHhcCCCCcccccccccchhhhHHHHHHHHHhhccch-hhc--hhhhHHHHhcccCCcchhhhhhH
Confidence 3334444555544444444 223346677999999999753311 111 12323678899999999999999
Q ss_pred HHHhHhhhhhhhhhhccCcccccchhhHHHH-HHHHHHh---hhcCChhHHHHHHHHHHHHH
Q 000134 212 TQIGYFLQDTVLSSLFLDENASSRSNELKLL-DVIKLAF---TAADDPLILETLLESTAELM 269 (2096)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~d~~i~eTll~~~~~i~ 269 (2096)
+||.++++|. |-+..+..++.. .-|+..+ -..+|..+.-..++|+.+|.
T Consensus 104 kqigcilEdc---------DtnaVseillvvNaeilklildcIggeddeVAkAAiesikria 156 (524)
T KOG4413|consen 104 KQIGCILEDC---------DTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIA 156 (524)
T ss_pred hhhhHHHhcC---------chhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 9999998432 223334333311 1222222 23678889999999999983
No 316
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.63 E-value=1.8e+03 Score=29.91 Aligned_cols=169 Identities=13% Similarity=0.217 Sum_probs=108.3
Q ss_pred ChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhcccccc-chhhHHHHHHHHhc--CCCcchhhhHHHH
Q 000134 487 DLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTT-YVPKILVLLMHAIN--KESLQCEGLSVLH 563 (2096)
Q Consensus 487 ~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~~v~~-~~pqI~a~L~~aL~--~~~L~~~~l~~W~ 563 (2096)
.+-.|+..-+=|+++.+.+ +..+.+..+=..|+++.+-+.+.=.+ =.++++..|-..+. .++++..|+.--.
T Consensus 201 ~m~~yl~~~ldGLf~~LsD-----~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~ 275 (675)
T KOG0212|consen 201 EMISYLPSLLDGLFNMLSD-----SSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQ 275 (675)
T ss_pred HHHhcchHHHHHHHHHhcC-----CcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHH
Confidence 4557777767777776653 23455555666778887777764444 45777777776664 4567777755445
Q ss_pred HHHHHhccCCCcchhhHHHHHHHHhhhccccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCChhhhHHHHHH
Q 000134 564 FFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKA 643 (2096)
Q Consensus 564 ~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~l~~v~~~ 643 (2096)
.||.. .+.++-+.++.|+..++|++..-++ ...+.+..++ |..+++ +. +.+.
T Consensus 276 efV~i----~g~~~l~~~s~il~~iLpc~s~~e~---~~i~~~a~~~------n~~l~~--l~------s~~~------- 327 (675)
T KOG0212|consen 276 EFVKI----PGRDLLLYLSGILTAILPCLSDTEE---MSIKEYAQMV------NGLLLK--LV------SSER------- 327 (675)
T ss_pred HHhcC----CCcchhhhhhhhhhhcccCCCCCcc---ccHHHHHHHH------HHHHHH--HH------hhhh-------
Confidence 57775 4567889999999999999974332 1112222222 222221 00 0000
Q ss_pred HHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHH
Q 000134 644 IQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVT 691 (2096)
Q Consensus 644 l~~~r~~~~l~~~l~~~~~~l~~en~~Vr~~aL~eL~~~L~~~~~~l~ 691 (2096)
.....+.+.-+..+.+.+.|++..-|..+|+=+..+..+...++-
T Consensus 328 ---~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~ 372 (675)
T KOG0212|consen 328 ---LKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLL 372 (675)
T ss_pred ---hccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhh
Confidence 011156667777888889999999999999999998888776544
No 317
>cd05119 RIO RIO kinase family, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct
Probab=25.23 E-value=46 Score=37.49 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=22.9
Q ss_pred ccCCCCCceeeecCCCcEEeeecccccc
Q 000134 1932 LGDRHGENILFDSTTGDCVHVDFSCLFD 1959 (2096)
Q Consensus 1932 LGDRH~eNILld~~tG~vvHIDF~~~F~ 1959 (2096)
=||=||+||+++ +|.+.=+|||..-.
T Consensus 138 H~Dl~p~Nili~--~~~~~liDfg~a~~ 163 (187)
T cd05119 138 HGDLSEYNILVD--DGKVYIIDVPQAVE 163 (187)
T ss_pred cCCCChhhEEEE--CCcEEEEECccccc
Confidence 579999999999 89999999988743
No 318
>PRK14879 serine/threonine protein kinase; Provisional
Probab=25.06 E-value=51 Score=37.95 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=21.7
Q ss_pred ccCCCCCceeeecCCCcEEeeecccc
Q 000134 1932 LGDRHGENILFDSTTGDCVHVDFSCL 1957 (2096)
Q Consensus 1932 LGDRH~eNILld~~tG~vvHIDF~~~ 1957 (2096)
=||-+|+|||++ .|.+.-||||+.
T Consensus 118 H~Dl~p~Nil~~--~~~~~liDf~~a 141 (211)
T PRK14879 118 HGDLTTSNMILS--GGKIYLIDFGLA 141 (211)
T ss_pred cCCCCcccEEEE--CCCEEEEECCcc
Confidence 489999999998 799999999875
No 319
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=24.87 E-value=9.2e+02 Score=29.52 Aligned_cols=132 Identities=20% Similarity=0.280 Sum_probs=79.2
Q ss_pred CCCChHHHHHHHHHHHHHHHHhcc-ccccc-hhhHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHH
Q 000134 509 HAEDLSLQKQALKRIEILIEMIGS-HLTTY-VPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFA 586 (2096)
Q Consensus 509 ~~~~~~~k~~~l~sl~~li~l~g~-~v~~~-~pqI~a~L~~aL~~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~ 586 (2096)
.+++...|.+++..|.+.++-+.+ .++.- +.=++..+.+-|+....-..+++.-..+++ .....++....++..++.
T Consensus 9 tsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~-~~~~~~~~~~~i~~~l~~ 87 (262)
T PF14500_consen 9 TSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVK-MKNFSPESAVKILRSLFQ 87 (262)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHh-CcCCChhhHHHHHHHHHH
Confidence 345677888899999998888765 44432 233445556666655555555777777774 333344444455554443
Q ss_pred HhhhccccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCChhhhHHHHHHHHHhcCCCCHHHHH
Q 000134 587 ALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQL 657 (2096)
Q Consensus 587 ~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~l~~v~~~l~~~r~~~~l~~~l 657 (2096)
.+-+ + ..+..+|..+.+|++.|+.++.+.++ .+.. .-+...++...|..|+|--+
T Consensus 88 ~~~~--q---~~~q~~R~~~~~ll~~l~~~~~~~l~----------~~~~-~fv~~~i~~~~gEkDPRnLl 142 (262)
T PF14500_consen 88 NVDV--Q---SLPQSTRYAVYQLLDSLLENHREALQ----------SMGD-DFVYGFIQLIDGEKDPRNLL 142 (262)
T ss_pred hCCh--h---hhhHHHHHHHHHHHHHHHHHhHHHHH----------hchh-HHHHHHHHHhccCCCHHHHH
Confidence 2211 1 22345689999999999988887762 1111 12445566666666666443
No 320
>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily.; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....
Probab=24.57 E-value=45 Score=38.50 Aligned_cols=32 Identities=31% Similarity=0.408 Sum_probs=22.9
Q ss_pred HhhhccccCCCCCceeeecCCCcEEeeecccc
Q 000134 1926 VGHIVGLGDRHGENILFDSTTGDCVHVDFSCL 1957 (2096)
Q Consensus 1926 vgYILGLGDRH~eNILld~~tG~vvHIDF~~~ 1957 (2096)
..+.+.=||=||+|||++...|++--|||+.+
T Consensus 164 ~~~~~~HgD~~~~Nil~~~~~~~i~iID~e~a 195 (239)
T PF01636_consen 164 LPPVLIHGDLHPGNILVDPSDGRIGIIDFEDA 195 (239)
T ss_dssp SCEEEE-SS-SGGGEEEESSTTEEEE--GTT-
T ss_pred CCcEEEEeccccccceeeeccceeEEEecccc
Confidence 56778889999999999977788878999764
No 321
>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom
Probab=24.49 E-value=57 Score=37.47 Aligned_cols=31 Identities=23% Similarity=0.284 Sum_probs=25.8
Q ss_pred ccccCCCCCceeeecCCCcEEeeecccccccc
Q 000134 1930 VGLGDRHGENILFDSTTGDCVHVDFSCLFDKG 1961 (2096)
Q Consensus 1930 LGLGDRH~eNILld~~tG~vvHIDF~~~F~kg 1961 (2096)
+-=||=+|+||+++. +|++.=+|||.+...+
T Consensus 146 i~H~Dl~p~Nill~~-~~~~~liDfg~~~~~~ 176 (198)
T cd05144 146 IIHGDLSEFNILVDD-DEKIYIIDWPQMVSTD 176 (198)
T ss_pred CCcCCCCcccEEEcC-CCcEEEEECCccccCC
Confidence 345699999999985 9999999999886544
No 322
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=24.43 E-value=1.9e+03 Score=29.73 Aligned_cols=153 Identities=16% Similarity=0.158 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHHHHHHH-hccc-------cccchhhHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCCcchhhHHHHH
Q 000134 513 LSLQKQALKRIEILIEM-IGSH-------LTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQV 584 (2096)
Q Consensus 513 ~~~k~~~l~sl~~li~l-~g~~-------v~~~~pqI~a~L~~aL~~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i 584 (2096)
...+.-++.+++.|++- |... +..+.|.+..-|..+....+-... ..+++.|...+. ..+
T Consensus 411 ~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-----~~~LkaLGN~g~-------~~~ 478 (574)
T smart00638 411 PYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEI-----QLYLKALGNAGH-------PSS 478 (574)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchhe-----eeHHHhhhccCC-------hhH
Confidence 45677899999999984 4321 245778888888888754332211 234565543221 445
Q ss_pred HHHhhhccccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCChhhhHHHHHHHHHhcCCCCHHHHHHHHHhhc
Q 000134 585 FAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGL 664 (2096)
Q Consensus 585 ~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~~l 664 (2096)
+..+.|++......+...+..|+.-|+.+...+...+++.+-.++.-+.-|.=-++.+.+.-.+.. +....|..++..+
T Consensus 479 i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~-P~~~~l~~ia~~l 557 (574)
T smart00638 479 IKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLNRAEPPEVRMAAVLVLMETK-PSVALLQRIAELL 557 (574)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC-CCHHHHHHHHHHH
Confidence 566777776333334456777777788776666666666655555444322213454555444432 1233344444444
Q ss_pred cCCC-hhHHHHHHHH
Q 000134 665 NHEN-LNVRYMVVCE 678 (2096)
Q Consensus 665 ~~en-~~Vr~~aL~e 678 (2096)
.+|. ..|+-....+
T Consensus 558 ~~E~~~QV~sfv~S~ 572 (574)
T smart00638 558 NKEPNLQVASFVYSH 572 (574)
T ss_pred hhcCcHHHHHHhHHh
Confidence 4443 4554444433
No 323
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=24.38 E-value=2.2e+03 Score=30.59 Aligned_cols=82 Identities=17% Similarity=0.119 Sum_probs=60.0
Q ss_pred CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHH
Q 000134 1380 APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSR 1459 (2096)
Q Consensus 1380 ~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~Lllak 1459 (2096)
++...++-|+.|=..|+...|+..+-.+++.-. . ..+-+++++|+
T Consensus 413 ~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~----------------------------~-------~~~~vw~~~a~ 457 (895)
T KOG2076|consen 413 DVDLYLDLADALTNIGKYKEALRLLSPITNREG----------------------------Y-------QNAFVWYKLAR 457 (895)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc----------------------------c-------cchhhhHHHHH
Confidence 456888999999999999999999887654210 0 01446777777
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhH
Q 000134 1460 WIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCD 1498 (2096)
Q Consensus 1460 Wl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d 1498 (2096)
-+.+.+. -++++..|.+++.+.|..-.+-.+|+--|.
T Consensus 458 c~~~l~e--~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~ 494 (895)
T KOG2076|consen 458 CYMELGE--YEEAIEFYEKVLILAPDNLDARITLASLYQ 494 (895)
T ss_pred HHHHHhh--HHHHHHHHHHHHhcCCCchhhhhhHHHHHH
Confidence 7666654 678889999999999987777666665553
No 324
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.
Probab=23.58 E-value=52 Score=43.09 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.4
Q ss_pred ccCCCCCceeeecCCCcEEeeecccc
Q 000134 1932 LGDRHGENILFDSTTGDCVHVDFSCL 1957 (2096)
Q Consensus 1932 LGDRH~eNILld~~tG~vvHIDF~~~ 1957 (2096)
-||=||+||+++ .+|++.=+|||++
T Consensus 280 H~D~hPgNilv~-~~g~i~liDfG~~ 304 (437)
T TIGR01982 280 HADLHPGNIFVL-KDGKIIALDFGIV 304 (437)
T ss_pred eCCCCcccEEEC-CCCcEEEEeCCCe
Confidence 479999999997 5899999999986
No 325
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=23.37 E-value=1.8e+02 Score=23.13 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Q 000134 1451 AKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM 1485 (2096)
Q Consensus 1451 Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~ 1485 (2096)
|+++..+|.-....++ .++.+..|++|++++|+
T Consensus 1 a~~~~~~g~~~~~~~~--~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGD--YEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT---HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCC--chHHHHHHHHHHHHCcC
Confidence 4456666665554544 78889999999999985
No 326
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=23.05 E-value=9.6e+02 Score=25.80 Aligned_cols=61 Identities=25% Similarity=0.165 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCCC-----hHHHHHHHHHHHcCCchHHHHHHHHHhhcC
Q 000134 1351 CWLQYAKLCRLAGHYETATRAILEAQASGAP-----NVHMEKAKLLWSTRRSDGAIAELQQNLLNK 1411 (2096)
Q Consensus 1351 ~WL~~AklARKag~~~~A~~all~a~~~~~~-----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~ 1411 (2096)
.+...|..-...|+.+.|.-.-.+|...+.+ .+.|..|--++..|+.++|+..|++.+...
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~ 68 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF 68 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 5677888888999999998888888776533 477888999999999999999999987643
No 327
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.00 E-value=1e+03 Score=29.14 Aligned_cols=105 Identities=17% Similarity=0.110 Sum_probs=68.4
Q ss_pred HcCChHHHHHHHHHHh--hcCCChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcc
Q 000134 1361 LAGHYETATRAILEAQ--ASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVL 1438 (2096)
Q Consensus 1361 Kag~~~~A~~all~a~--~~~~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1438 (2096)
-.|+--.|...|..-- -.+++++--|-|.++-..|+..+|.-++++.+-..|.
T Consensus 132 a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~------------------------- 186 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF------------------------- 186 (289)
T ss_pred HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC-------------------------
Confidence 3444445555544322 2478899999999999999999999999998753221
Q ss_pred cccccchhchhHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHH
Q 000134 1439 SNTQTLNEKRDIAKTLLLYSRWIH-YTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVL 1501 (2096)
Q Consensus 1439 ~~~q~~~~~~~~Aka~LllakWl~-~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~ 1501 (2096)
++. .+..||+-+- ..|........++|.+|++++++.-.++|-+-.-...+.
T Consensus 187 --------n~l---~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la 239 (289)
T KOG3060|consen 187 --------NPL---YFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALA 239 (289)
T ss_pred --------cHH---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHH
Confidence 111 2333333221 233344566779999999999987778876655555554
No 328
>PLN02789 farnesyltranstransferase
Probab=22.58 E-value=1.6e+03 Score=28.25 Aligned_cols=117 Identities=9% Similarity=0.023 Sum_probs=77.0
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCh--HHHHHHHHHHHcCC-chHHHHHHHHHhhcCCcccccccccc
Q 000134 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAPN--VHMEKAKLLWSTRR-SDGAIAELQQNLLNKPVEVVGSTAIS 1422 (2096)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~~~--~~iE~AKLLW~~g~-~~~Ai~~L~~~i~~~~~~~~~~~~~~ 1422 (2096)
++..+.|=-+-.+-.+.++.+.|.....++.+.++.. +...++.+|-+.|. ..+|+..+++++...|..
T Consensus 34 ~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn-------- 105 (320)
T PLN02789 34 PEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN-------- 105 (320)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc--------
Confidence 3445566555666677789999999999998877654 55577788888884 588999998887643211
Q ss_pred cccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHH
Q 000134 1423 SITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIH-YTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDD 1499 (2096)
Q Consensus 1423 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~-~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~ 1499 (2096)
-| +..-. +|+. ..+....++.+..+.++++.+|+...+|++-|--+.+
T Consensus 106 ------------------yq----------aW~~R-~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~ 154 (320)
T PLN02789 106 ------------------YQ----------IWHHR-RWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRT 154 (320)
T ss_pred ------------------hH----------HhHHH-HHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 01 11111 1221 2232223556788899999999999999887665543
No 329
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=22.30 E-value=3e+02 Score=33.56 Aligned_cols=64 Identities=27% Similarity=0.401 Sum_probs=46.5
Q ss_pred HHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHH
Q 000134 654 KDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCA 733 (2096)
Q Consensus 654 ~~~l~~~~~~l~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca 733 (2096)
.+++..|++.+..++.-.|.++ +.+.|+-... ..|..|...|++.--. +-++-.||
T Consensus 186 EeaI~al~~~l~~~SalfrhEv----------------AfVfGQl~s~-~ai~~L~k~L~d~~E~-------pMVRhEaA 241 (289)
T KOG0567|consen 186 EEAINALIDGLADDSALFRHEV----------------AFVFGQLQSP-AAIPSLIKVLLDETEH-------PMVRHEAA 241 (289)
T ss_pred HHHHHHHHHhcccchHHHHHHH----------------HHHHhhccch-hhhHHHHHHHHhhhcc-------hHHHHHHH
Confidence 5788899999988876666554 3455543322 4689999999885322 46888999
Q ss_pred HhhcccCc
Q 000134 734 DCLGALGA 741 (2096)
Q Consensus 734 ~CLG~IGa 741 (2096)
+.||-||-
T Consensus 242 eALGaIa~ 249 (289)
T KOG0567|consen 242 EALGAIAD 249 (289)
T ss_pred HHHHhhcC
Confidence 99999984
No 330
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=22.25 E-value=5.1e+02 Score=36.44 Aligned_cols=102 Identities=13% Similarity=0.075 Sum_probs=60.0
Q ss_pred hchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhcc----CChhHHHH--HhH
Q 000134 1052 RCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKS----LSLQDELL--SNK 1125 (2096)
Q Consensus 1052 ~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~----~sl~~qil--~~E 1125 (2096)
..+.|-+||--.++-.++..+. .. ...+..|.- .+++--|-..|+..-... -+++=|++ -|+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~-----~~-----a~vLkaLsl--~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~ 88 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNA-----LY-----AKVLKALSL--FRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYR 88 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCc-----HH-----HHHHHHHHH--HHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHH
Confidence 3455667777778776654321 10 012222222 123333333355432211 22333454 458
Q ss_pred hhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHH
Q 000134 1126 KSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQA 1166 (2096)
Q Consensus 1126 ~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ 1166 (2096)
-.|..++|.++||++.++.|+ .+...++..|+.+-+.|..
T Consensus 89 d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 89 DLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999998 7778888888877666554
No 331
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=22.23 E-value=1.2e+03 Score=30.46 Aligned_cols=81 Identities=14% Similarity=0.174 Sum_probs=53.4
Q ss_pred HHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHH
Q 000134 655 DQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCAD 734 (2096)
Q Consensus 655 ~~l~~~~~~l~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~ 734 (2096)
.-+..+++.++++|..|.+.||.=+. +. .+-.++... . ..++.-++.+|.+.+.. +. ++.|+.++..
T Consensus 297 ~lf~~la~ci~S~h~qVAErAl~~w~-----n~-~~~~li~~~-~--~~i~p~i~~~L~~~~~~--HW--n~~Vr~~a~~ 363 (409)
T PF01603_consen 297 PLFKRLAKCISSPHFQVAERALYFWN-----NE-YFLSLISQN-S--RVILPIIFPALYRNSKN--HW--NQTVRNLAQN 363 (409)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHGGGG-----SH-HHHHHHHCT-H--HHHHHHHHHHHSSTTSS---S--STTHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHC-----CH-HHHHHHHhC-h--HHHHHHHHHHHHHHHHH--Hh--hHHHHHHHHH
Confidence 34678899999999999999985432 22 233333221 1 13566677777665432 22 3579999999
Q ss_pred hhcccCccCccccc
Q 000134 735 CLGALGAVDPAKVK 748 (2096)
Q Consensus 735 CLG~IGalDp~r~~ 748 (2096)
+|-.+.-+||.-++
T Consensus 364 vl~~l~~~d~~lf~ 377 (409)
T PF01603_consen 364 VLKILMEMDPKLFD 377 (409)
T ss_dssp HHHHHHTTSHHHHH
T ss_pred HHHHHHHhCHHHHH
Confidence 99999888886554
No 332
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=22.16 E-value=5.1e+02 Score=36.42 Aligned_cols=176 Identities=21% Similarity=0.142 Sum_probs=104.9
Q ss_pred HHhhhcccchhhhhhhhhhchhhhhhhcCcc--chHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCccccccccccc
Q 000134 8 ILDLALRDEFDEVRAEAVISLPVIVMWSGLG--VLTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDKN 85 (2096)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (2096)
.+...+.|---+||.-|+..+|..+..-|.. ...-+++.|...+.+ +=.++.++.+++-.++=..|.-
T Consensus 522 l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~-~y~~R~t~l~si~~la~v~g~e--------- 591 (759)
T KOG0211|consen 522 LLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQD-NYLVRMTTLFSIHELAEVLGQE--------- 591 (759)
T ss_pred HHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCc-ccchhhHHHHHHHHHHHHhccH---------
Confidence 3444455656678888888888888887733 234455555555554 3445555555544443333322
Q ss_pred ccccccccccccccccHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhcccCccchh
Q 000134 86 ACKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQ 165 (2096)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~ 165 (2096)
+.+. ++-+ +|.-+-..+..+|+
T Consensus 592 --------------------------------i~~~-------------------------~Llp-~~~~l~~D~vanVR 613 (759)
T KOG0211|consen 592 --------------------------------ITCE-------------------------DLLP-VFLDLVKDPVANVR 613 (759)
T ss_pred --------------------------------HHHH-------------------------HHhH-HHHHhccCCchhhh
Confidence 2111 1333 44445566778999
Q ss_pred hHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHHHHHH
Q 000134 166 LSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVI 245 (2096)
Q Consensus 166 ~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (2096)
..+...|.+|++-...++. .+.....+++|..|.+.+||.+|=-+......... -+.......+-
T Consensus 614 ~nvak~L~~i~~~L~~~~~---~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~~------------~~~~d~~~~~~ 678 (759)
T KOG0211|consen 614 INVAKHLPKILKLLDESVR---DEEVLPLLETLSSDQELDVRYRAILAFGSIELSRL------------ESSLDVRDKKQ 678 (759)
T ss_pred hhHHHHHHHHHhhcchHHH---HHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHH------------hhhHHHHHHHH
Confidence 9999999999999886643 23344688999999999999988555555431111 12223333444
Q ss_pred HHHhhhcCChhHHHHHHHHHHH
Q 000134 246 KLAFTAADDPLILETLLESTAE 267 (2096)
Q Consensus 246 ~~~~~~~~d~~i~eTll~~~~~ 267 (2096)
..++. -.|.+..|+-.+.+.-
T Consensus 679 ~~a~~-~~~~~~~~~~~~~~~~ 699 (759)
T KOG0211|consen 679 LIAFL-EQDSHVLEVEIIKTKL 699 (759)
T ss_pred HHHHH-hhhhHHHHHHHHHHHh
Confidence 45555 3445577777666544
No 333
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=21.84 E-value=1.2e+02 Score=27.25 Aligned_cols=38 Identities=26% Similarity=0.502 Sum_probs=32.5
Q ss_pred CChhhHHHHHHHhhcccCccchhhHHHHHHHHHHccCCch
Q 000134 143 SDFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRD 182 (2096)
Q Consensus 143 ~~~~~~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~ 182 (2096)
.|+.+++.+++++|-.+..+ +...+.+|..+|+.++.+
T Consensus 2 ~n~eYLKNVll~fl~~~e~~--r~~ll~vi~tlL~fs~~e 39 (46)
T smart00755 2 ANFEYLKNVLLQFLTLRESE--RETLLKVISTVLQLSPEE 39 (46)
T ss_pred ccHHHHHHHHHHHhccCcch--HHHHHHHHHHHhCCCHHH
Confidence 48899999999999886654 778899999999998755
No 334
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.78 E-value=1.6e+03 Score=32.19 Aligned_cols=71 Identities=24% Similarity=0.245 Sum_probs=46.6
Q ss_pred HHHHHHHHh--hhcccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccchhhhhhhhhhHHHHHHh
Q 000134 262 LESTAELMM--AVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRL 339 (2096)
Q Consensus 262 l~~~~~i~~--~~~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l 339 (2096)
+.++|.+.. +.....++ ..++..+++.++.+++.|+.+|..-++.+|...+-+ ++.-.| ++=.+|+|+.+
T Consensus 569 ld~I~~~a~~~g~~F~~~L-~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~------s~~~lI-~en~DYlv~sl 640 (1014)
T KOG4524|consen 569 LDSIGTIAAVMGEEFQPEL-MDYLYPVLEKLASPSEAISQVAQSCALRIADALNYG------SPPHLI-RENVDYLVNSL 640 (1014)
T ss_pred hhhhHHHHHHhHHHHHHHH-HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCC------ChHHHH-HhhhHHHHHHH
Confidence 445555521 23233333 367778999999999999999999999999988543 222223 23357877654
Q ss_pred c
Q 000134 340 A 340 (2096)
Q Consensus 340 ~ 340 (2096)
-
T Consensus 641 a 641 (1014)
T KOG4524|consen 641 A 641 (1014)
T ss_pred H
Confidence 3
No 335
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=21.65 E-value=2.1e+03 Score=29.29 Aligned_cols=105 Identities=22% Similarity=0.305 Sum_probs=68.2
Q ss_pred hhHHHHHHhhhccCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHhc
Q 000134 471 VPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAIN 550 (2096)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL~ 550 (2096)
+.+|+..+. --+...-+-+++++.+.+.+..+.+-|+-++.+|..||+.
T Consensus 395 ~ida~rsLs----------l~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~--------------------- 443 (898)
T COG5240 395 AIDALRSLS----------LLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMEN--------------------- 443 (898)
T ss_pred eHHHHHHHH----------hhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhh---------------------
Confidence 456666544 3345566777888888887766778889899999988876
Q ss_pred CCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhccccCC---CCchhhHHHHHHHHHHHHHHhHH
Q 000134 551 KESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDK---DNPSVLLNKVVKILEDLVLKNRA 619 (2096)
Q Consensus 551 ~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~---~~~~~~~~~~~~il~~Li~~n~~ 619 (2096)
.|+-++.++...+.||.-- +. .+|.+-++..+.+.. ..| -.-+..|++-++.||.-
T Consensus 444 ~p~skEraLe~LC~fIEDc------ey----~~I~vrIL~iLG~EgP~a~~P---~~yvrhIyNR~iLEN~i 502 (898)
T COG5240 444 DPDSKERALEVLCTFIEDC------EY----HQITVRILGILGREGPRAKTP---GKYVRHIYNRLILENNI 502 (898)
T ss_pred CchHHHHHHHHHHHHHhhc------ch----hHHHHHHHHHhcccCCCCCCc---chHHHHHHHHHHHhhhH
Confidence 4556677777777777631 12 344444444443221 123 25688999999999863
No 336
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=21.44 E-value=1.1e+02 Score=23.57 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=20.6
Q ss_pred ChHHHHHHHHHHHcCCchHHHHHHH
Q 000134 1381 PNVHMEKAKLLWSTRRSDGAIAELQ 1405 (2096)
Q Consensus 1381 ~~~~iE~AKLLW~~g~~~~Ai~~L~ 1405 (2096)
|.+.+..|..+|..|+..+|...++
T Consensus 1 ~~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 1 PRARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 3456777899999999999988775
No 337
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=21.31 E-value=89 Score=27.85 Aligned_cols=39 Identities=18% Similarity=0.351 Sum_probs=29.4
Q ss_pred CChhhHHHHHHHhhcccCccchhhHHHHHHHHHHccCCch
Q 000134 143 SDFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRD 182 (2096)
Q Consensus 143 ~~~~~~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~ 182 (2096)
.|+.+++.+++++|.... ...+-..+.+|..+|+.+..+
T Consensus 3 ~~~eYLKNvl~~fl~~~~-~~~~~~llpvi~tlL~fs~~e 41 (46)
T PF01465_consen 3 INLEYLKNVLLQFLESRE-PSEREQLLPVIATLLKFSPEE 41 (46)
T ss_dssp HHHHHHHHHHHHHHTTSS----HHHHHHHHHHHTT--HHH
T ss_pred hhHHHHHHHHHHHhcCCc-hhhHHHHHHHHHHHHCCCHHH
Confidence 578899999999999876 566777889999999997754
No 338
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=20.74 E-value=4.7e+02 Score=35.55 Aligned_cols=180 Identities=15% Similarity=0.185 Sum_probs=96.6
Q ss_pred hhHHHHhhhcccchhh-hhhhhhhchhhhhhhcCccchHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCcccccccc
Q 000134 4 SDSEILDLALRDEFDE-VRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDW 82 (2096)
Q Consensus 4 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (2096)
+...+.+|-...+... ..++++.++|-.+..-.+..+..+|.-+++-.-.....++.+.-.++|=|. +..|....
T Consensus 358 a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv--~~~c~~~~-- 433 (574)
T smart00638 358 ALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLV--RRYCVNTP-- 433 (574)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHH--HHHhcCCC--
Confidence 4455666666655443 467778888888877777777777777766544556677777777777654 33341111
Q ss_pred cccccccccccccccccccHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhc-c-cC
Q 000134 83 DKNACKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLY-D-ES 160 (2096)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~ 160 (2096)
.|. ......-..++.+++.=.++++. ..+...-| -.-+|.+. +..-..+-.+++ + +.
T Consensus 434 ---~~~------~~~~~~~~~~l~~~l~~~~~~~~---~~~~~~~L-----kaLGN~g~----~~~i~~l~~~l~~~~~~ 492 (574)
T smart00638 434 ---SCP------DFVLEELLKYLHELLQQAVSKGD---EEEIQLYL-----KALGNAGH----PSSIKVLEPYLEGAEPL 492 (574)
T ss_pred ---CCC------hhhHHHHHHHHHHHHHHHHhcCC---chheeeHH-----HhhhccCC----hhHHHHHHHhcCCCCCC
Confidence 122 01111122233332211111110 01111111 01112222 333344555666 3 56
Q ss_pred ccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHh-hcccHHHHHHHHHHHh
Q 000134 161 SEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLL-LNKRKAIRDAFCTQIG 215 (2096)
Q Consensus 161 ~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~-~~~~r~vR~a~~~~~~ 215 (2096)
+..++++.+.+|+|+-++.+.-+. . ..+..++ .+.+-+||.||.-.+-
T Consensus 493 ~~~iR~~Av~Alr~~a~~~p~~v~----~---~l~~i~~n~~e~~EvRiaA~~~lm 541 (574)
T smart00638 493 STFIRLAAILALRNLAKRDPRKVQ----E---VLLPIYLNRAEPPEVRMAAVLVLM 541 (574)
T ss_pred CHHHHHHHHHHHHHHHHhCchHHH----H---HHHHHHcCCCCChHHHHHHHHHHH
Confidence 778999999999999877663321 1 1334444 4678889999965543
No 339
>cd00180 PKc Catalytic domain of Protein Kinases. Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which
Probab=20.74 E-value=7.2e+02 Score=27.22 Aligned_cols=29 Identities=34% Similarity=0.355 Sum_probs=24.3
Q ss_pred ccccCCCCCceeeecCCCcEEeeeccccc
Q 000134 1930 VGLGDRHGENILFDSTTGDCVHVDFSCLF 1958 (2096)
Q Consensus 1930 LGLGDRH~eNILld~~tG~vvHIDF~~~F 1958 (2096)
+--||-+|+||+++..+|.+.=+||+..-
T Consensus 113 ~~H~dl~~~ni~~~~~~~~~~l~d~~~~~ 141 (215)
T cd00180 113 IIHRDLKPENILLDSDNGKVKLADFGLSK 141 (215)
T ss_pred eeccCCCHhhEEEeCCCCcEEEecCCceE
Confidence 34589999999999658999999998764
No 340
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=20.71 E-value=7.8e+02 Score=35.09 Aligned_cols=104 Identities=24% Similarity=0.336 Sum_probs=71.4
Q ss_pred eEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceeeecCCcceeEecCCCccHHHHHHHHHHhcCCCcc
Q 000134 1780 PFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDR 1859 (2096)
Q Consensus 1780 ~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~ 1859 (2096)
.++.|| .+++-|+.+.+|+..+|.-.... .++++.|+.-+ +.|-.|||++.. +.
T Consensus 115 kivYKP-r~l~~d~~f~~~l~~ln~~~~~~--------~~~~~~~l~~~-~ygw~EfI~~~~------------c~---- 168 (825)
T cd04792 115 KLVYKP-RSLSVDALFQELLEWLNSFLGAL--------PLRTPKVLDRG-DYGWEEFIEHQP------------CQ---- 168 (825)
T ss_pred EEEECC-CCchHHHHHHHHHHHHHhcCCcc--------ccccceeeecC-CcceEEeecCCC------------CC----
Confidence 456784 78999999999999999865433 23677777554 679999999621 00
Q ss_pred ccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHHHHHhhCCChhHHHHHHHHHHHHhhHHHHHhhhccccCCCCCc
Q 000134 1860 QKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGEN 1939 (2096)
Q Consensus 1860 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf~~~f~~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eN 1939 (2096)
...+++ +|=+-++.+-.+.|+||-.|=|-||
T Consensus 169 --~~~e~~-----------------------------------------------~fY~r~G~llal~y~L~~tD~H~EN 199 (825)
T cd04792 169 --SKEEVE-----------------------------------------------RYYYRLGGLLALLYLLNATDLHFEN 199 (825)
T ss_pred --CHHHHH-----------------------------------------------HHHHHHHHHHHHHHHcCCcccchhh
Confidence 000111 1223356667788999999999999
Q ss_pred eeeecCCCcEEeeeccccccc
Q 000134 1940 ILFDSTTGDCVHVDFSCLFDK 1960 (2096)
Q Consensus 1940 ILld~~tG~vvHIDF~~~F~k 1960 (2096)
|.-+ -+.-|=||+-.+|..
T Consensus 200 iIA~--g~~PvlIDlETlf~~ 218 (825)
T cd04792 200 IIAS--GEYPVLIDLETLFHP 218 (825)
T ss_pred heee--CCCceEEeeHHhcCC
Confidence 9543 566677888777754
No 341
>smart00090 RIO RIO-like kinase.
Probab=20.69 E-value=64 Score=38.61 Aligned_cols=28 Identities=32% Similarity=0.365 Sum_probs=23.8
Q ss_pred ccCCCCCceeeecCCCcEEeeecccccccc
Q 000134 1932 LGDRHGENILFDSTTGDCVHVDFSCLFDKG 1961 (2096)
Q Consensus 1932 LGDRH~eNILld~~tG~vvHIDF~~~F~kg 1961 (2096)
=||=||+||+++ +|++.=||||.+...+
T Consensus 172 H~Dikp~NIli~--~~~i~LiDFg~a~~~~ 199 (237)
T smart00090 172 HGDLSEYNILVH--DGKVVIIDVSQSVELD 199 (237)
T ss_pred eCCCChhhEEEE--CCCEEEEEChhhhccC
Confidence 479999999998 8999999999875444
No 342
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=20.45 E-value=1.8e+02 Score=22.79 Aligned_cols=26 Identities=12% Similarity=0.093 Sum_probs=13.9
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1384 HMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1384 ~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
....+.++|..|+..+|+..++++++
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34445555566666666665555554
No 343
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=20.27 E-value=1.1e+03 Score=25.49 Aligned_cols=76 Identities=14% Similarity=0.131 Sum_probs=45.8
Q ss_pred hHhhcCHHHHHHHHHHHHccCCCch---hhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChh
Q 000134 1124 NKKSGNWAEVFTSCEQALQMEPTSV---QRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWD 1200 (2096)
Q Consensus 1124 ~E~~G~W~~A~~~YE~~Lq~~p~~~---~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd 1200 (2096)
+-..|+.++|...|+.++...|++. ...+.+-+|+...|+++..+...+... .+.+........-++..+.|+|+
T Consensus 58 ~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~--~~~~~~~~~~~~Gdi~~~~g~~~ 135 (145)
T PF09976_consen 58 AYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIP--DEAFKALAAELLGDIYLAQGDYD 135 (145)
T ss_pred HHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc--CcchHHHHHHHHHHHHHHCCCHH
Confidence 4456888888888888887765542 234566777788888887776665431 12233333334445555666665
Q ss_pred h
Q 000134 1201 L 1201 (2096)
Q Consensus 1201 ~ 1201 (2096)
.
T Consensus 136 ~ 136 (145)
T PF09976_consen 136 E 136 (145)
T ss_pred H
Confidence 4
No 344
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.01 E-value=7.4e+02 Score=30.40 Aligned_cols=102 Identities=16% Similarity=0.131 Sum_probs=74.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHh-hcC----CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000134 1352 WLQYAKLCRLAGHYETATRAILEAQ-ASG----APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2096)
Q Consensus 1352 WL~~AklARKag~~~~A~~all~a~-~~~----~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~ 1426 (2096)
--+-|--.-|+|.+..|..+..+-. .++ .|++..=-.+.++.+|+...|.......++..|..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s------------ 211 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS------------ 211 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC------------
Confidence 4566666778888888888877543 332 46677777788999999999999888877643310
Q ss_pred cCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHH
Q 000134 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEK 1488 (2096)
Q Consensus 1427 ~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK 1488 (2096)
+ -...+++++|.-+.+.++ .++....|+++++-.|.-+.
T Consensus 212 -------~--------------KApdallKlg~~~~~l~~--~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 212 -------P--------------KAPDALLKLGVSLGRLGN--TDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred -------C--------------CChHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHCCCCHH
Confidence 0 012579999998888876 78888888999888886543
Done!