Query 000134
Match_columns 2096
No_of_seqs 393 out of 1582
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 18:56:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000134.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000134hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2x6h_A GH13170P, VPS34, phosph 100.0 3.9E-57 1.3E-61 584.5 33.7 461 1526-2083 76-679 (696)
2 1e7u_A Phosphatidylinositol 3- 100.0 4.6E-56 1.6E-60 592.9 33.5 469 1527-2082 446-937 (961)
3 2wxf_A Phosphatidylinositol-4, 100.0 8.8E-56 3E-60 590.3 32.4 462 1527-2081 440-920 (940)
4 3ls8_A Phosphatidylinositol 3- 100.0 2E-55 6.9E-60 559.7 33.3 462 1527-2082 63-604 (614)
5 2y3a_A Phosphatidylinositol-4, 100.0 2.5E-55 8.5E-60 589.2 33.3 468 1527-2081 593-1072(1092)
6 3hhm_A Phosphatidylinositol-4, 100.0 1.3E-51 4.6E-56 548.2 33.7 467 1527-2081 586-1071(1091)
7 1w1n_A Phosphatidylinositol 3- 99.3 2E-13 7E-18 107.4 1.8 32 2065-2096 2-33 (33)
8 4fdd_A Transportin-1; heat rep 99.0 4.5E-06 1.5E-10 114.5 51.8 668 12-800 98-822 (852)
9 2bpt_A Importin beta-1 subunit 99.0 7.6E-06 2.6E-10 111.7 51.7 594 145-800 177-859 (861)
10 1u6g_C TIP120 protein, CAND1; 99.0 2.9E-06 9.9E-11 121.1 48.0 523 12-631 56-700 (1230)
11 4fdd_A Transportin-1; heat rep 98.8 3.3E-06 1.1E-10 115.8 36.3 544 11-619 181-788 (852)
12 1u6g_C TIP120 protein, CAND1; 98.7 1.6E-05 5.5E-10 113.5 42.6 694 7-745 178-964 (1230)
13 1w3b_A UDP-N-acetylglucosamine 98.7 2.1E-05 7.1E-10 96.5 36.5 372 1046-1498 5-384 (388)
14 1qgr_A Protein (importin beta 98.7 3.8E-05 1.3E-09 104.9 42.4 472 146-682 320-869 (876)
15 2bpt_A Importin beta-1 subunit 98.7 1.1E-05 3.9E-10 110.0 36.9 436 146-616 323-812 (861)
16 1qgr_A Protein (importin beta 98.7 0.00012 4.2E-09 100.0 46.8 591 144-799 169-872 (876)
17 1b3u_A Protein (protein phosph 98.6 0.00046 1.6E-08 89.6 46.2 556 6-740 12-586 (588)
18 3ieg_A DNAJ homolog subfamily 98.5 0.0002 6.8E-09 85.4 37.5 325 1045-1500 8-353 (359)
19 2xpi_A Anaphase-promoting comp 98.4 0.00029 1E-08 91.2 36.5 151 1044-1209 121-331 (597)
20 2y4t_A DNAJ homolog subfamily 98.4 0.00057 2E-08 85.0 37.5 325 1045-1500 31-376 (450)
21 3hym_B Cell division cycle pro 98.3 0.00015 5.3E-09 85.6 28.6 278 1119-1499 27-316 (330)
22 1b3u_A Protein (protein phosph 98.3 0.00013 4.5E-09 94.7 30.1 479 15-570 59-551 (588)
23 3ieg_A DNAJ homolog subfamily 98.3 0.00057 1.9E-08 81.4 32.6 304 1120-1542 9-339 (359)
24 2xpi_A Anaphase-promoting comp 98.2 0.0026 8.8E-08 82.3 39.7 393 1044-1542 88-549 (597)
25 1w3b_A UDP-N-acetylglucosamine 98.2 0.0011 3.9E-08 81.0 33.5 332 1120-1542 5-338 (388)
26 2gw1_A Mitochondrial precursor 98.0 0.0018 6.3E-08 81.6 32.0 262 1127-1493 202-489 (514)
27 2y4t_A DNAJ homolog subfamily 98.0 0.0029 1E-07 78.5 32.7 302 1121-1542 33-362 (450)
28 3fp2_A TPR repeat-containing p 97.9 0.0037 1.3E-07 79.4 31.0 112 1347-1496 308-421 (537)
29 2gw1_A Mitochondrial precursor 97.8 0.0034 1.2E-07 79.1 27.8 92 1088-1179 8-104 (514)
30 2x1g_F Cadmus; transport prote 97.7 0.01 3.5E-07 82.5 34.0 196 512-745 706-910 (971)
31 2x19_B Importin-13; nuclear tr 97.7 0.023 7.9E-07 78.8 36.7 148 512-686 698-848 (963)
32 1fch_A Peroxisomal targeting s 97.7 0.0027 9.1E-08 76.5 23.9 114 1349-1500 217-343 (368)
33 3fp2_A TPR repeat-containing p 97.7 0.0035 1.2E-07 79.7 25.5 112 1349-1498 276-389 (537)
34 3uq3_A Heat shock protein STI1 97.6 0.0096 3.3E-07 67.3 25.8 99 1347-1483 137-237 (258)
35 3hym_B Cell division cycle pro 97.6 0.011 3.8E-07 69.5 27.2 61 1349-1409 236-298 (330)
36 3cv0_A Peroxisome targeting si 97.6 0.0038 1.3E-07 73.4 22.2 256 1119-1499 26-298 (327)
37 2vgl_B AP-2 complex subunit be 97.5 0.22 7.6E-06 65.3 40.4 461 148-741 50-532 (591)
38 3cv0_A Peroxisome targeting si 97.5 0.0041 1.4E-07 73.1 21.4 62 1349-1410 206-269 (327)
39 4eqf_A PEX5-related protein; a 97.4 0.005 1.7E-07 74.5 21.4 256 1119-1499 70-339 (365)
40 3u4t_A TPR repeat-containing p 97.4 0.013 4.4E-07 67.3 23.7 135 1350-1542 109-254 (272)
41 2qk2_A LP04448P; mini spindles 97.4 0.0022 7.6E-08 74.2 16.0 177 509-740 25-204 (242)
42 2jdq_A Importin alpha-1 subuni 97.3 0.073 2.5E-06 66.4 30.5 401 198-687 28-446 (450)
43 2q7f_A YRRB protein; TPR, prot 97.2 0.0049 1.7E-07 69.3 17.1 109 1351-1497 127-237 (243)
44 4a1s_A PINS, partner of inscut 97.2 0.032 1.1E-06 68.3 25.6 109 1348-1488 262-378 (411)
45 3sf4_A G-protein-signaling mod 97.2 0.052 1.8E-06 65.7 26.8 122 1347-1500 225-360 (406)
46 1wa5_B Importin alpha subunit; 97.2 0.052 1.8E-06 70.0 28.1 400 200-687 97-513 (530)
47 4eqf_A PEX5-related protein; a 97.2 0.02 6.7E-07 69.2 22.7 240 1043-1410 68-310 (365)
48 4b8j_A Importin subunit alpha- 97.1 0.18 6E-06 64.9 32.0 399 199-686 83-498 (528)
49 1fch_A Peroxisomal targeting s 97.1 0.04 1.4E-06 66.1 23.8 62 1348-1409 284-358 (368)
50 3ro2_A PINS homolog, G-protein 97.0 0.066 2.2E-06 62.4 24.1 107 1347-1485 221-335 (338)
51 1ibr_B P95, importin beta-1 su 97.0 0.055 1.9E-06 67.7 24.7 147 151-309 39-202 (462)
52 2ho1_A Type 4 fimbrial biogene 96.9 0.071 2.4E-06 60.3 22.8 104 1349-1490 141-246 (252)
53 1ibr_B P95, importin beta-1 su 96.9 0.22 7.4E-06 62.2 28.8 189 509-744 227-440 (462)
54 3uq3_A Heat shock protein STI1 96.8 0.042 1.4E-06 61.9 19.6 61 1349-1409 173-235 (258)
55 1xi4_A Clathrin heavy chain; a 96.8 0.51 1.8E-05 66.2 32.9 259 1040-1409 1049-1308(1630)
56 4g1t_A Interferon-induced prot 96.8 0.024 8.1E-07 71.0 18.7 318 1044-1409 55-400 (472)
57 2ooe_A Cleavage stimulation fa 96.7 2.4 8.4E-05 54.1 40.3 134 1348-1541 229-388 (530)
58 2vq2_A PILW, putative fimbrial 96.7 0.16 5.3E-06 55.8 22.4 107 1349-1492 113-221 (225)
59 2x19_B Importin-13; nuclear tr 96.6 1.1 3.7E-05 62.1 35.6 388 200-628 459-907 (963)
60 4gco_A Protein STI-1; structur 96.6 0.025 8.4E-07 58.4 14.1 114 1344-1495 8-123 (126)
61 4gyw_A UDP-N-acetylglucosamine 96.5 0.087 3E-06 70.8 21.9 137 1346-1542 6-144 (723)
62 2jdq_A Importin alpha-1 subuni 96.4 0.22 7.4E-06 62.1 24.2 154 148-311 65-222 (450)
63 1wa5_B Importin alpha subunit; 96.4 0.66 2.3E-05 59.6 29.4 148 151-312 91-246 (530)
64 2x1g_F Cadmus; transport prote 96.4 0.72 2.5E-05 64.0 31.7 389 202-627 476-918 (971)
65 3vtx_A MAMA; tetratricopeptide 96.4 0.16 5.3E-06 54.8 19.8 136 1347-1542 3-140 (184)
66 3sf4_A G-protein-signaling mod 96.3 0.077 2.6E-06 64.2 18.8 62 1348-1409 266-335 (406)
67 3tpo_A Importin subunit alpha- 96.3 1.5 5E-05 56.6 31.7 103 199-311 85-192 (529)
68 4b8j_A Importin subunit alpha- 96.3 0.55 1.9E-05 60.2 27.7 346 152-532 79-447 (528)
69 3now_A UNC-45 protein, SD10334 96.3 2 6.9E-05 58.0 33.5 508 161-746 217-790 (810)
70 2h6f_A Protein farnesyltransfe 96.3 0.36 1.2E-05 59.8 24.6 60 1123-1182 106-166 (382)
71 2z6g_A B-catenin; FULL-length, 96.2 2.4 8.1E-05 57.5 34.4 149 150-310 153-305 (780)
72 3ibv_A Exportin-T; karyopherin 96.2 0.43 1.5E-05 66.3 27.4 379 167-571 332-772 (980)
73 2ho1_A Type 4 fimbrial biogene 96.2 0.16 5.4E-06 57.4 19.5 152 1045-1209 42-201 (252)
74 2q7f_A YRRB protein; TPR, prot 96.2 0.055 1.9E-06 60.6 15.0 188 1043-1251 26-219 (243)
75 3ul1_B Importin subunit alpha- 96.1 1.6 5.6E-05 55.9 30.6 107 194-311 62-173 (510)
76 4a1s_A PINS, partner of inscut 96.1 0.28 9.5E-06 59.9 22.4 64 1347-1410 301-372 (411)
77 3u4t_A TPR repeat-containing p 96.1 0.56 1.9E-05 53.4 23.6 152 1045-1209 8-168 (272)
78 2z6g_A B-catenin; FULL-length, 96.1 6 0.00021 53.6 36.9 149 148-312 116-265 (780)
79 2vq2_A PILW, putative fimbrial 96.0 0.31 1.1E-05 53.4 20.0 151 1045-1208 13-172 (225)
80 2vgl_B AP-2 complex subunit be 96.0 4.1 0.00014 53.3 33.6 185 159-374 97-289 (591)
81 2vyi_A SGTA protein; chaperone 96.0 0.13 4.5E-06 50.9 15.3 116 1346-1499 9-126 (131)
82 3ro2_A PINS homolog, G-protein 95.9 0.17 5.7E-06 58.9 18.1 62 1348-1409 262-331 (338)
83 3vtx_A MAMA; tetratricopeptide 95.9 0.14 4.7E-06 55.3 16.0 136 1347-1542 37-174 (184)
84 1elw_A TPR1-domain of HOP; HOP 95.8 0.11 3.9E-06 50.4 13.9 112 1348-1497 3-116 (118)
85 3mkr_A Coatomer subunit epsilo 95.8 0.94 3.2E-05 53.6 24.4 260 1121-1487 6-269 (291)
86 2lni_A Stress-induced-phosphop 95.8 0.14 4.7E-06 51.3 14.8 115 1346-1498 13-129 (133)
87 2pl2_A Hypothetical conserved 95.8 0.12 4.2E-06 58.1 15.8 131 1349-1539 5-148 (217)
88 4ga2_A E3 SUMO-protein ligase 95.7 0.018 6.1E-07 61.3 7.7 105 1356-1498 4-110 (150)
89 3m1i_C Exportin-1; heat repeat 95.7 13 0.00043 52.1 40.3 168 535-737 750-929 (1049)
90 3urz_A Uncharacterized protein 95.6 0.096 3.3E-06 58.5 14.1 113 1349-1499 4-134 (208)
91 4g1t_A Interferon-induced prot 95.6 1.7 5.7E-05 54.1 26.6 87 1366-1486 317-405 (472)
92 4i17_A Hypothetical protein; T 95.6 0.41 1.4E-05 53.5 19.1 120 1350-1500 43-166 (228)
93 2pl2_A Hypothetical conserved 95.6 0.26 8.8E-06 55.4 17.3 136 1346-1542 36-184 (217)
94 1na0_A Designed protein CTPR3; 95.5 0.26 8.8E-06 48.3 15.2 113 1348-1498 8-122 (125)
95 3upv_A Heat shock protein STI1 95.5 0.16 5.6E-06 51.2 13.9 112 1347-1496 2-121 (126)
96 3sz7_A HSC70 cochaperone (SGT) 95.5 0.095 3.3E-06 55.8 12.7 113 1345-1495 7-121 (164)
97 2z6h_A Catenin beta-1, beta-ca 95.5 3.6 0.00012 54.3 30.4 105 197-312 21-129 (644)
98 2qk2_A LP04448P; mini spindles 95.5 0.22 7.7E-06 57.2 16.6 153 144-313 53-208 (242)
99 3mkr_A Coatomer subunit epsilo 95.4 0.082 2.8E-06 62.8 13.2 147 1044-1208 105-260 (291)
100 3as5_A MAMA; tetratricopeptide 95.4 0.16 5.4E-06 53.7 13.9 150 1045-1207 13-168 (186)
101 2vgl_A Adaptor protein complex 95.3 12 0.0004 49.4 37.8 130 161-313 87-219 (621)
102 2dba_A Smooth muscle cell asso 95.3 0.26 9E-06 50.3 14.9 113 1346-1496 25-142 (148)
103 1xnf_A Lipoprotein NLPI; TPR, 95.2 0.2 6.9E-06 57.1 15.3 55 1349-1404 215-269 (275)
104 1w63_A Adapter-related protein 95.2 3.3 0.00011 54.5 28.6 106 192-311 144-264 (618)
105 4i17_A Hypothetical protein; T 95.2 0.35 1.2E-05 54.0 16.7 133 1349-1541 7-149 (228)
106 1xi4_A Clathrin heavy chain; a 95.1 17 0.00059 51.5 35.3 329 1048-1498 993-1325(1630)
107 2qk1_A Protein STU2; STU2P, XM 95.1 0.28 9.6E-06 57.1 15.9 183 509-740 26-219 (249)
108 2z6h_A Catenin beta-1, beta-ca 95.0 14 0.00047 48.7 40.8 148 150-310 17-169 (644)
109 4gyw_A UDP-N-acetylglucosamine 94.9 0.12 4.2E-06 69.4 14.0 115 1347-1499 41-157 (723)
110 1elr_A TPR2A-domain of HOP; HO 94.9 0.47 1.6E-05 46.9 15.1 121 1347-1499 2-124 (131)
111 4gco_A Protein STI-1; structur 94.9 0.1 3.6E-06 53.7 10.4 102 1045-1158 18-125 (126)
112 3qky_A Outer membrane assembly 94.9 0.56 1.9E-05 53.7 17.7 113 1345-1490 11-134 (261)
113 2fbn_A 70 kDa peptidylprolyl i 94.8 0.39 1.3E-05 52.8 15.4 116 1347-1500 36-169 (198)
114 4ga2_A E3 SUMO-protein ligase 94.6 0.25 8.5E-06 52.3 12.6 115 1346-1497 28-144 (150)
115 3q49_B STIP1 homology and U bo 94.4 0.56 1.9E-05 47.5 14.5 102 1346-1485 6-109 (137)
116 1a17_A Serine/threonine protei 94.4 0.53 1.8E-05 49.0 14.6 112 1347-1496 11-124 (166)
117 2h6f_A Protein farnesyltransfe 94.3 0.36 1.2E-05 59.8 15.2 139 1344-1542 92-233 (382)
118 1p5q_A FKBP52, FK506-binding p 94.3 0.3 1E-05 59.1 14.2 117 1346-1500 144-277 (336)
119 2fo7_A Synthetic consensus TPR 94.3 0.59 2E-05 46.1 14.1 113 1045-1169 6-124 (136)
120 3gyz_A Chaperone protein IPGC; 94.3 0.18 6.3E-06 54.0 10.9 95 1045-1179 41-135 (151)
121 2vsy_A XCC0866; transferase, g 94.3 0.4 1.4E-05 62.1 16.2 139 1347-1542 21-161 (568)
122 1wa5_C Importin alpha RE-expor 94.2 3.4 0.00012 57.2 26.3 167 162-337 375-559 (960)
123 1hxi_A PEX5, peroxisome target 94.2 0.19 6.4E-06 51.3 10.3 98 1043-1180 20-117 (121)
124 1hh8_A P67PHOX, NCF-2, neutrop 94.0 0.94 3.2E-05 49.6 16.3 132 1350-1542 7-154 (213)
125 4gcn_A Protein STI-1; structur 93.9 0.49 1.7E-05 48.5 12.9 109 1346-1485 5-115 (127)
126 4abn_A Tetratricopeptide repea 93.9 0.3 1E-05 62.1 13.6 118 1347-1501 100-227 (474)
127 2fo7_A Synthetic consensus TPR 93.8 0.68 2.3E-05 45.6 13.5 110 1350-1497 2-113 (136)
128 1elw_A TPR1-domain of HOP; HOP 93.6 0.6 2E-05 45.2 12.4 96 1045-1180 9-104 (118)
129 2pzi_A Probable serine/threoni 93.6 0.38 1.3E-05 64.1 14.4 137 1346-1543 430-568 (681)
130 2vyi_A SGTA protein; chaperone 93.6 0.7 2.4E-05 45.5 13.0 107 1045-1163 17-129 (131)
131 3as5_A MAMA; tetratricopeptide 93.6 1.1 3.6E-05 47.1 15.2 113 1348-1498 41-155 (186)
132 2xev_A YBGF; tetratricopeptide 93.5 0.84 2.9E-05 45.6 13.6 107 1350-1491 3-114 (129)
133 1b89_A Protein (clathrin heavy 93.5 2 6.7E-05 54.1 19.4 59 1349-1409 177-235 (449)
134 3upv_A Heat shock protein STI1 93.4 0.24 8.1E-06 50.0 9.3 87 1119-1206 9-95 (126)
135 1ihg_A Cyclophilin 40; ppiase 93.3 0.63 2.1E-05 57.3 14.5 116 1347-1500 221-354 (370)
136 4abn_A Tetratricopeptide repea 93.2 0.51 1.7E-05 60.0 13.9 152 1044-1208 106-283 (474)
137 2ond_A Cleavage stimulation fa 93.2 2.6 8.8E-05 49.8 19.2 111 1347-1494 48-175 (308)
138 1qqe_A Vesicular transport pro 93.1 1.2 4.1E-05 52.4 16.2 157 1047-1209 44-225 (292)
139 2ond_A Cleavage stimulation fa 93.1 2.1 7.2E-05 50.5 18.4 115 1347-1498 97-214 (308)
140 2xcb_A PCRH, regulatory protei 93.1 1.1 3.7E-05 46.5 14.0 106 1344-1487 13-120 (142)
141 4db8_A Armadillo-repeat protei 93.1 1 3.4E-05 51.4 15.0 148 152-311 17-168 (252)
142 2pzi_A Probable serine/threoni 93.0 0.56 1.9E-05 62.6 14.5 155 1047-1210 398-561 (681)
143 1kt0_A FKBP51, 51 kDa FK506-bi 93.0 0.46 1.6E-05 60.1 13.1 116 1347-1500 266-398 (457)
144 2kck_A TPR repeat; tetratricop 93.0 0.53 1.8E-05 45.2 10.8 95 1045-1179 11-108 (112)
145 3qou_A Protein YBBN; thioredox 92.9 0.93 3.2E-05 53.3 14.7 151 1348-1558 116-269 (287)
146 3gyz_A Chaperone protein IPGC; 92.9 0.88 3E-05 48.6 13.1 107 1343-1487 30-138 (151)
147 3qky_A Outer membrane assembly 92.9 1.2 4.2E-05 50.8 15.4 133 1347-1500 50-198 (261)
148 3sz7_A HSC70 cochaperone (SGT) 92.8 0.39 1.3E-05 50.9 10.4 86 1121-1207 18-103 (164)
149 4hxt_A De novo protein OR329; 92.8 0.86 2.9E-05 51.6 13.9 150 150-311 47-200 (252)
150 2yhc_A BAMD, UPF0169 lipoprote 92.8 1.9 6.4E-05 48.4 16.6 170 1349-1559 4-199 (225)
151 2vgx_A Chaperone SYCD; alterna 92.8 0.43 1.5E-05 50.4 10.5 91 1045-1175 26-116 (148)
152 3nf1_A KLC 1, kinesin light ch 92.8 1.9 6.6E-05 49.6 17.1 27 1383-1409 280-306 (311)
153 1elr_A TPR2A-domain of HOP; HO 92.8 0.4 1.4E-05 47.4 9.8 88 1121-1208 11-104 (131)
154 3qou_A Protein YBBN; thioredox 92.7 0.71 2.4E-05 54.4 13.4 115 1348-1500 150-268 (287)
155 1hxi_A PEX5, peroxisome target 92.5 0.5 1.7E-05 48.0 10.1 59 1351-1409 19-79 (121)
156 2vgx_A Chaperone SYCD; alterna 92.4 1.5 5E-05 46.2 14.1 104 1344-1485 16-121 (148)
157 3ul1_B Importin subunit alpha- 92.4 14 0.00047 47.3 25.9 152 149-312 102-263 (510)
158 1ouv_A Conserved hypothetical 92.4 2.5 8.7E-05 48.4 17.3 137 1348-1542 5-147 (273)
159 3rkv_A Putative peptidylprolyl 92.3 1.6 5.4E-05 46.1 14.2 116 1347-1500 9-145 (162)
160 2hr2_A Hypothetical protein; a 92.2 0.31 1.1E-05 52.9 8.5 85 1119-1204 16-123 (159)
161 2lni_A Stress-induced-phosphop 92.2 0.46 1.6E-05 47.4 9.3 83 1123-1206 25-107 (133)
162 2qk1_A Protein STU2; STU2P, XM 92.1 1.9 6.4E-05 50.1 15.7 160 143-313 56-223 (249)
163 4hxt_A De novo protein OR329; 92.0 4.2 0.00014 45.8 18.2 148 152-311 7-158 (252)
164 1xnf_A Lipoprotein NLPI; TPR, 92.0 2.5 8.5E-05 47.8 16.4 110 1346-1493 40-151 (275)
165 3tpo_A Importin subunit alpha- 92.0 8.9 0.0003 49.2 23.4 153 148-312 120-282 (529)
166 1a17_A Serine/threonine protei 91.9 0.83 2.8E-05 47.5 11.4 88 1120-1208 19-106 (166)
167 1hh8_A P67PHOX, NCF-2, neutrop 91.9 2.1 7.1E-05 46.8 15.1 135 1045-1194 11-167 (213)
168 3urz_A Uncharacterized protein 91.8 1.6 5.4E-05 48.5 14.2 59 1351-1409 56-116 (208)
169 4db6_A Armadillo repeat protei 91.8 1.4 4.8E-05 48.7 13.7 151 149-311 14-168 (210)
170 4db8_A Armadillo-repeat protei 91.8 0.93 3.2E-05 51.7 12.5 150 150-311 57-210 (252)
171 2yhc_A BAMD, UPF0169 lipoprote 91.8 2.2 7.6E-05 47.8 15.5 156 1045-1209 9-210 (225)
172 2xcb_A PCRH, regulatory protei 91.7 0.46 1.6E-05 49.3 8.9 85 1121-1206 25-109 (142)
173 3q49_B STIP1 homology and U bo 91.6 0.53 1.8E-05 47.7 9.1 85 1121-1206 16-100 (137)
174 1w63_A Adapter-related protein 91.6 0.56 1.9E-05 61.9 11.6 247 12-312 115-381 (618)
175 2xev_A YBGF; tetratricopeptide 91.5 0.55 1.9E-05 47.0 9.1 89 1119-1207 7-100 (129)
176 4gcn_A Protein STI-1; structur 91.5 0.45 1.5E-05 48.8 8.4 59 1121-1179 15-73 (127)
177 2r5s_A Uncharacterized protein 91.3 1.1 3.7E-05 48.2 11.7 46 1451-1498 108-155 (176)
178 2hr2_A Hypothetical protein; a 91.2 1.4 4.8E-05 47.8 12.2 108 1347-1485 9-134 (159)
179 4db6_A Armadillo repeat protei 91.1 0.88 3E-05 50.4 11.0 147 150-310 57-209 (210)
180 1ouv_A Conserved hypothetical 91.0 5.1 0.00017 45.8 17.9 135 1349-1541 74-218 (273)
181 2kck_A TPR repeat; tetratricop 90.9 0.7 2.4E-05 44.3 8.9 89 1120-1209 12-103 (112)
182 1oyz_A Hypothetical protein YI 90.7 2.9 9.8E-05 48.7 15.5 56 7-69 26-81 (280)
183 2dba_A Smooth muscle cell asso 90.7 0.69 2.4E-05 47.1 9.0 85 1121-1206 35-122 (148)
184 4e6h_A MRNA 3'-END-processing 90.5 57 0.002 43.3 30.5 132 1348-1495 342-477 (679)
185 3gjx_A Exportin-1; transport, 90.5 74 0.0025 44.5 38.5 138 167-315 454-600 (1073)
186 3edt_B KLC 2, kinesin light ch 90.4 4.4 0.00015 45.6 16.4 82 1126-1208 13-110 (283)
187 2l6j_A TPR repeat-containing p 90.3 0.67 2.3E-05 44.9 8.1 62 1120-1181 10-71 (111)
188 1na0_A Designed protein CTPR3; 90.3 2.7 9.3E-05 40.7 12.7 25 1045-1069 14-38 (125)
189 3edt_B KLC 2, kinesin light ch 90.0 3 0.0001 46.9 14.5 124 1346-1499 40-181 (283)
190 2vsy_A XCC0866; transferase, g 89.9 1.8 6.2E-05 55.9 14.1 123 1045-1179 28-159 (568)
191 3rkv_A Putative peptidylprolyl 89.9 0.54 1.8E-05 49.8 7.6 88 1118-1206 15-120 (162)
192 1qqe_A Vesicular transport pro 89.8 8.3 0.00028 45.1 18.5 140 1348-1541 36-190 (292)
193 2r5s_A Uncharacterized protein 89.8 2.1 7.2E-05 45.9 12.3 146 1045-1202 11-163 (176)
194 2e2e_A Formate-dependent nitri 89.7 3.3 0.00011 44.0 13.7 103 1348-1488 43-150 (177)
195 2vgl_A Adaptor protein complex 89.5 55 0.0019 43.0 27.7 161 148-312 147-360 (621)
196 1p5q_A FKBP52, FK506-binding p 89.2 2.3 7.9E-05 51.2 13.4 123 1045-1167 152-283 (336)
197 2kc7_A BFR218_protein; tetratr 89.1 0.99 3.4E-05 43.2 8.2 63 1119-1181 5-68 (99)
198 2e2e_A Formate-dependent nitri 89.0 1.4 4.9E-05 46.9 10.2 124 1361-1542 22-148 (177)
199 3ulq_A Response regulator aspa 88.8 14 0.00048 44.6 20.1 113 1355-1498 109-235 (383)
200 2ooe_A Cleavage stimulation fa 88.3 64 0.0022 40.8 38.2 169 1451-1663 272-456 (530)
201 1na3_A Designed protein CTPR2; 88.3 1.1 3.9E-05 41.5 7.8 60 1121-1180 16-75 (91)
202 3nf1_A KLC 1, kinesin light ch 88.3 5.4 0.00019 45.7 15.3 123 1347-1499 67-207 (311)
203 2c2l_A CHIP, carboxy terminus 87.9 1.3 4.4E-05 52.0 9.7 85 1120-1205 10-94 (281)
204 2fbn_A 70 kDa peptidylprolyl i 87.8 2.9 0.0001 45.6 11.9 112 1045-1180 43-154 (198)
205 1hz4_A MALT regulatory protein 87.7 52 0.0018 39.1 25.5 60 1350-1409 254-321 (373)
206 3now_A UNC-45 protein, SD10334 87.5 64 0.0022 43.7 26.5 260 251-529 505-783 (810)
207 3ro3_A PINS homolog, G-protein 87.4 5.9 0.0002 40.1 13.3 119 1347-1497 7-139 (164)
208 3rjv_A Putative SEL1 repeat pr 87.1 6.5 0.00022 43.7 14.4 137 1349-1542 18-163 (212)
209 3ma5_A Tetratricopeptide repea 87.0 1.3 4.5E-05 43.1 7.6 52 1122-1173 15-66 (100)
210 1jdh_A Beta-catenin; beta-cate 86.9 73 0.0025 40.0 37.3 107 197-312 24-132 (529)
211 2if4_A ATFKBP42; FKBP-like, al 86.8 1.1 3.7E-05 54.3 8.3 114 1347-1498 177-309 (338)
212 4hat_C Exportin-1; heat repeat 86.5 1.2E+02 0.0042 42.2 43.1 105 202-314 465-573 (1023)
213 2ifu_A Gamma-SNAP; membrane fu 86.4 6 0.00021 46.6 14.4 155 1047-1208 43-220 (307)
214 1wao_1 Serine/threonine protei 86.2 1 3.6E-05 57.3 8.1 110 1349-1496 6-117 (477)
215 2l6j_A TPR repeat-containing p 86.1 3.4 0.00012 39.7 10.1 30 1469-1498 54-89 (111)
216 2c2l_A CHIP, carboxy terminus 85.9 4.7 0.00016 47.1 13.0 99 1349-1485 4-104 (281)
217 1na3_A Designed protein CTPR2; 85.7 4.9 0.00017 37.1 10.6 43 1453-1497 45-87 (91)
218 1kt0_A FKBP51, 51 kDa FK506-bi 85.6 2.2 7.4E-05 53.9 10.5 89 1120-1209 274-377 (457)
219 3k9i_A BH0479 protein; putativ 85.5 0.94 3.2E-05 45.2 5.8 56 1122-1177 35-90 (117)
220 3rjv_A Putative SEL1 repeat pr 85.0 6.1 0.00021 43.9 12.8 148 1349-1548 50-207 (212)
221 3ltm_A Alpha-REP4; protein eng 85.0 5.9 0.0002 43.8 12.7 58 148-217 51-108 (211)
222 2qfc_A PLCR protein; TPR, HTH, 85.0 38 0.0013 39.2 20.3 119 1348-1498 74-207 (293)
223 3k9i_A BH0479 protein; putativ 84.4 0.5 1.7E-05 47.2 3.1 81 1126-1207 2-85 (117)
224 3a6p_A Exportin-5; exportin-5, 84.1 57 0.0019 46.3 24.9 103 519-622 506-620 (1204)
225 2kat_A Uncharacterized protein 83.9 2.2 7.6E-05 42.0 7.6 54 1123-1176 28-81 (115)
226 3mv2_B Coatomer subunit epsilo 83.5 7.7 0.00026 46.5 13.3 153 1044-1209 104-279 (310)
227 1jdh_A Beta-catenin; beta-cate 83.3 1E+02 0.0035 38.6 36.4 149 150-311 20-173 (529)
228 3a6p_A Exportin-5; exportin-5, 83.3 1.8E+02 0.0061 41.3 35.8 45 291-338 57-101 (1204)
229 1xqr_A HSPBP1 protein; armadil 83.0 9.2 0.00032 45.5 13.8 139 162-311 54-197 (296)
230 1oyz_A Hypothetical protein YI 82.8 72 0.0025 36.6 21.3 128 152-308 28-155 (280)
231 3ltj_A Alpharep-4; protein eng 82.8 14 0.00047 40.5 14.3 63 143-217 10-72 (201)
232 3e4b_A ALGK; tetratricopeptide 82.7 1E+02 0.0036 38.3 30.2 138 1349-1547 248-396 (452)
233 1wao_1 Serine/threonine protei 82.7 1.8 6E-05 55.2 7.9 86 1122-1208 14-99 (477)
234 3ulq_A Response regulator aspa 82.6 86 0.0029 37.5 22.8 121 1346-1498 140-275 (383)
235 4e6h_A MRNA 3'-END-processing 82.1 6.2 0.00021 52.5 13.0 112 1347-1496 432-550 (679)
236 1ihg_A Cyclophilin 40; ppiase 81.8 2.1 7.2E-05 52.6 7.8 87 1120-1207 229-331 (370)
237 4ady_A RPN2, 26S proteasome re 81.7 6.3 0.00021 53.8 12.7 203 6-271 474-677 (963)
238 1zu2_A Mitochondrial import re 81.6 3.1 0.00011 45.0 8.1 63 1469-1542 62-124 (158)
239 3q15_A PSP28, response regulat 81.1 8.8 0.0003 46.4 13.0 156 1045-1207 106-285 (378)
240 3ltj_A Alpharep-4; protein eng 80.9 11 0.00039 41.2 12.7 56 150-217 48-103 (201)
241 3ma5_A Tetratricopeptide repea 80.7 4.6 0.00016 39.1 8.4 63 1347-1409 5-69 (100)
242 3gw4_A Uncharacterized protein 80.0 14 0.00047 39.5 12.9 85 1122-1206 74-170 (203)
243 1xqr_A HSPBP1 protein; armadil 79.9 18 0.00062 43.0 14.8 148 151-311 85-239 (296)
244 2iw3_A Elongation factor 3A; a 79.3 85 0.0029 43.3 22.6 305 204-551 28-356 (986)
245 2kc7_A BFR218_protein; tetratr 78.6 11 0.00036 35.7 10.2 70 1385-1492 4-74 (99)
246 3gjx_A Exportin-1; transport, 78.3 2E+02 0.0068 40.2 26.3 284 292-594 72-428 (1073)
247 3ltm_A Alpha-REP4; protein eng 78.0 21 0.00073 39.2 13.9 60 147-218 19-78 (211)
248 2if4_A ATFKBP42; FKBP-like, al 77.7 2.8 9.5E-05 50.7 6.9 89 1120-1209 185-290 (338)
249 3grl_A General vesicular trans 77.2 1.9E+02 0.0065 37.9 24.6 241 283-567 124-394 (651)
250 3ro3_A PINS homolog, G-protein 77.1 14 0.00049 37.1 11.3 105 1348-1484 48-160 (164)
251 1wa5_C Importin alpha RE-expor 77.1 2.3E+02 0.008 38.9 41.2 128 440-569 541-672 (960)
252 3mv2_B Coatomer subunit epsilo 77.0 14 0.00049 44.3 12.6 136 1059-1208 85-236 (310)
253 2xm6_A Protein corresponding t 76.7 1.6E+02 0.0054 36.7 32.3 137 1349-1543 255-401 (490)
254 2ifu_A Gamma-SNAP; membrane fu 76.6 21 0.00073 41.8 14.2 107 1347-1486 74-188 (307)
255 3gw4_A Uncharacterized protein 75.4 12 0.0004 40.0 10.6 108 1346-1485 63-179 (203)
256 2kat_A Uncharacterized protein 71.9 10 0.00035 37.1 8.3 63 1347-1409 17-81 (115)
257 3q15_A PSP28, response regulat 71.8 26 0.00088 42.2 13.6 121 1346-1498 138-272 (378)
258 1xm9_A Plakophilin 1; armadill 71.3 2.1E+02 0.0072 35.7 24.5 144 152-311 7-173 (457)
259 4f3v_A ESX-1 secretion system 69.4 22 0.00075 42.0 11.6 65 1349-1413 171-240 (282)
260 3e4b_A ALGK; tetratricopeptide 68.6 2.3E+02 0.0079 35.1 24.2 135 1348-1543 212-356 (452)
261 1te4_A Conserved protein MTH18 66.8 17 0.00058 37.2 8.9 112 152-305 17-128 (131)
262 3ibv_A Exportin-T; karyopherin 66.3 3.9E+02 0.013 36.9 37.3 56 495-551 532-589 (980)
263 4f3v_A ESX-1 secretion system 66.2 26 0.00089 41.4 11.4 124 1123-1252 111-235 (282)
264 4b4t_Q 26S proteasome regulato 65.4 1.8E+02 0.0061 35.0 19.4 162 1047-1209 11-201 (434)
265 2qfc_A PLCR protein; TPR, HTH, 65.2 57 0.0019 37.6 14.2 115 1353-1498 119-247 (293)
266 4h7y_A Dual specificity protei 63.4 22 0.00076 38.1 8.8 87 1379-1496 11-103 (161)
267 4ffb_C Protein STU2; tubulin f 63.1 90 0.0031 36.1 15.4 152 145-312 53-214 (278)
268 1zu2_A Mitochondrial import re 61.4 6.3 0.00022 42.6 4.4 43 1123-1165 11-53 (158)
269 3u3w_A Transcriptional activat 61.1 54 0.0018 37.8 12.9 114 1355-1499 121-248 (293)
270 1klx_A Cysteine rich protein B 60.3 70 0.0024 32.8 12.3 120 1364-1543 10-131 (138)
271 3b2a_A TON_1937, putative unch 60.1 1.7E+02 0.0058 33.7 15.6 140 150-312 36-181 (265)
272 1b89_A Protein (clathrin heavy 60.1 1.3E+02 0.0045 37.8 16.6 52 1354-1409 361-412 (449)
273 2of3_A ZYG-9; multifunctional 59.9 64 0.0022 37.8 12.9 70 1589-1658 124-195 (266)
274 2v5f_A Prolyl 4-hydroxylase su 55.6 67 0.0023 31.2 10.6 88 1382-1501 6-93 (104)
275 2v5f_A Prolyl 4-hydroxylase su 53.6 23 0.00079 34.6 6.8 59 1123-1181 14-79 (104)
276 2xm6_A Protein corresponding t 53.4 4E+02 0.014 32.9 40.4 114 1349-1500 328-453 (490)
277 1hz4_A MALT regulatory protein 53.1 1.3E+02 0.0043 35.6 14.7 104 1349-1484 14-124 (373)
278 3dra_A Protein farnesyltransfe 52.2 3.6E+02 0.012 31.9 18.8 225 1129-1409 48-286 (306)
279 4g26_A Pentatricopeptide repea 51.7 1.4E+02 0.0046 38.1 15.3 154 1048-1212 34-204 (501)
280 3mkq_A Coatomer beta'-subunit; 50.9 50 0.0017 43.9 11.6 90 1044-1173 685-774 (814)
281 3n71_A Histone lysine methyltr 48.5 31 0.0011 44.0 8.5 90 1049-1142 318-421 (490)
282 3nmw_A APC variant protein; AR 45.8 4E+02 0.014 32.1 17.5 138 161-310 97-247 (354)
283 4g26_A Pentatricopeptide repea 44.3 80 0.0027 40.2 11.4 160 1087-1256 27-206 (501)
284 3n71_A Histone lysine methyltr 44.2 89 0.003 39.8 11.8 79 1329-1409 333-421 (490)
285 3u3w_A Transcriptional activat 42.5 1.1E+02 0.0037 35.2 11.4 105 1349-1484 155-268 (293)
286 4ffb_C Protein STU2; tubulin f 41.6 2.8E+02 0.0095 31.9 14.8 138 163-312 24-170 (278)
287 2of3_A ZYG-9; multifunctional 41.1 3.6E+02 0.012 31.4 15.2 139 198-371 54-201 (266)
288 2iw3_A Elongation factor 3A; a 41.1 1.1E+02 0.0037 42.3 12.3 210 384-624 73-291 (986)
289 3nmz_A APC variant protein; pr 40.6 4.9E+02 0.017 32.6 17.6 138 162-311 214-364 (458)
290 1juq_A ADP-ribosylation factor 39.9 1.7E+02 0.0059 31.8 11.6 66 630-697 27-92 (171)
291 1xm9_A Plakophilin 1; armadill 39.5 75 0.0026 39.8 10.0 151 151-312 287-451 (457)
292 1x5b_A Signal transducing adap 39.5 1.8E+02 0.0061 31.4 11.5 71 625-697 24-94 (163)
293 3bee_A Putative YFRE protein; 38.7 44 0.0015 32.3 6.0 51 1130-1180 25-75 (93)
294 3u0r_A Apoptosis inhibitor 5; 38.4 7.1E+02 0.024 31.5 24.9 252 139-414 53-318 (507)
295 4b4t_Q 26S proteasome regulato 37.9 89 0.0031 37.7 10.1 89 1380-1489 3-91 (434)
296 1lrv_A LRV, leucine-rich repea 37.5 28 0.00094 40.3 5.0 46 7-66 53-98 (244)
297 1te4_A Conserved protein MTH18 37.0 8.8 0.0003 39.4 0.7 84 195-308 17-100 (131)
298 1klx_A Cysteine rich protein B 34.1 2.2E+02 0.0075 28.9 10.9 101 1355-1495 31-137 (138)
299 3qwp_A SET and MYND domain-con 33.7 1.5E+02 0.005 37.0 11.2 54 1119-1172 292-353 (429)
300 1upk_A MO25 protein; transfera 33.4 7.1E+02 0.024 30.0 18.0 167 490-694 73-250 (341)
301 3g2s_A C-terminal fragment of 32.5 2.1E+02 0.0073 30.4 10.5 64 632-697 27-90 (149)
302 3l6x_A Catenin delta-1; cateni 31.9 4.4E+02 0.015 34.2 15.4 149 150-309 311-475 (584)
303 3qww_A SET and MYND domain-con 31.9 1.7E+02 0.0059 36.5 11.4 102 1352-1483 301-412 (433)
304 3qww_A SET and MYND domain-con 31.8 1E+02 0.0034 38.6 9.2 79 1329-1409 322-410 (433)
305 4ady_A RPN2, 26S proteasome re 31.3 4.8E+02 0.016 35.8 16.0 117 194-336 582-698 (963)
306 2uy1_A Cleavage stimulation fa 30.2 2.5E+02 0.0087 35.4 12.7 62 1348-1410 285-349 (493)
307 1mhq_A ADP-ribosylation factor 29.6 2.4E+02 0.0083 29.9 10.4 64 632-697 17-80 (148)
308 1dce_A Protein (RAB geranylger 28.8 3.1E+02 0.011 35.3 13.5 76 1130-1206 89-167 (567)
309 3nmz_A APC variant protein; pr 28.8 1.9E+02 0.0065 36.4 11.0 71 241-312 380-452 (458)
310 3nsz_A CK II alpha, casein kin 26.2 85 0.0029 36.8 6.9 51 1931-1981 152-204 (330)
311 3bee_A Putative YFRE protein; 26.0 2E+02 0.007 27.5 8.4 64 1348-1411 5-73 (93)
312 1dvp_A HRS, hepatocyte growth 25.9 3E+02 0.01 31.0 10.9 65 631-697 20-84 (220)
313 1zth_A RIO1 serine protein kin 25.9 37 0.0013 39.1 3.5 51 1932-1989 194-246 (258)
314 3b2a_A TON_1937, putative unch 25.7 1.3E+02 0.0044 34.7 7.5 70 655-739 33-102 (265)
315 3nmw_A APC variant protein; AR 24.5 1.9E+02 0.0066 35.0 9.6 155 150-312 173-336 (354)
316 3tjz_B Coatomer subunit gamma; 23.3 3.6E+02 0.012 32.7 11.7 118 204-350 42-159 (355)
317 3ly7_A Transcriptional activat 22.9 3.4E+02 0.012 33.1 11.3 67 1381-1486 277-343 (372)
318 1dce_A Protein (RAB geranylger 22.4 5.7E+02 0.019 32.8 14.1 133 1365-1542 89-225 (567)
319 1elk_A Target of MYB1; superhe 22.3 5.5E+02 0.019 27.3 11.6 64 631-696 31-95 (157)
320 3ldz_A STAM-1, signal transduc 21.8 3.1E+02 0.01 28.7 9.3 72 624-697 13-84 (140)
321 3l6x_A Catenin delta-1; cateni 21.3 6.7E+02 0.023 32.5 14.2 108 148-268 50-161 (584)
322 3zyq_A Hepatocyte growth facto 20.8 3.8E+02 0.013 30.3 10.5 64 632-697 24-87 (226)
323 1w9c_A CRM1 protein, exportin 20.4 8.9E+02 0.031 28.9 13.9 140 380-526 91-246 (321)
324 3qwp_A SET and MYND domain-con 20.4 5.7E+02 0.02 31.6 13.0 100 1354-1483 292-401 (429)
No 1
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=100.00 E-value=3.9e-57 Score=584.50 Aligned_cols=461 Identities=17% Similarity=0.283 Sum_probs=340.3
Q ss_pred HHHHHHHHHhhccCCcchhhhHHHHHHhhhhcCccccccCCCChhhhH-----hHHHHHHHHHHhhcCCCCCchhhhhhH
Q 000134 1526 PDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLK-----NVNGKVMSIMRGCLKDLPAYQWLTVLP 1600 (2096)
Q Consensus 1526 ~~ai~~Y~~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~iP~~~wl~~lP 1600 (2096)
+.|+.-|++|+...+..-......+|.-|-..+.. .++. -.+..|.+..-+.+...|....+.+||
T Consensus 76 ~~aL~kfL~sv~W~~~~e~~~a~~lL~~W~~~~~~---------dALeLL~~~f~~~~VR~yAV~~L~~~~de~L~~YLl 146 (696)
T 2x6h_A 76 KKALTKFLKCINWKLEDEVTQALWMLANWAPMDVE---------DALELLSPTFTHPQVRKYAVSRLAQAPDEDLLLYLL 146 (696)
T ss_dssp HHHHHHHGGGTTTSCHHHHHHHHHHHHHSCCCCHH---------HHHHHHSTTCCCHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred hhHHHHHHhhCCCCCHHHHHHHHHHHhcCCCCCHH---------HHHHHhcccCCCHHHHHHHHHHHHhCChHHHHHHHH
Confidence 47899999999888765444455799999543321 0110 012345666666778899999999999
Q ss_pred HhhhccccCchH--------------------------------------------------------------------
Q 000134 1601 QLVSRICHQNEE-------------------------------------------------------------------- 1612 (2096)
Q Consensus 1601 QLisRl~h~~~~-------------------------------------------------------------------- 1612 (2096)
|||+.|.+.+.+
T Consensus 147 QLVQALKyE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (696)
T 2x6h_A 147 QLVQALKYEDPRHIVHLHGCIFPERDVVRSILDDNGSLLDQSSLSDLSATSSGLHASVIPANQRAASVLAAIKSDKSVSP 226 (696)
T ss_dssp HHHHHGGGSCHHHHHHHHHHHC----------------------------------------------------------
T ss_pred HHHHHHHhcchhhhcccccccccchhcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999987310
Q ss_pred --------------------------------------------------HHHHHHHHHHHHHH--hchhhHHHHHHHhh
Q 000134 1613 --------------------------------------------------IVRLVKHIITSVLR--QYPQQGLWIMAAVS 1640 (2096)
Q Consensus 1613 --------------------------------------------------v~~~l~~il~kv~~--~yPqq~lw~l~~~~ 1640 (2096)
...+..-||.+... ...|+.+|+|.+.+
T Consensus 227 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~La~FLl~rA~~n~~i~h~l~W~L~~e~ 306 (696)
T 2x6h_A 227 GSAGGSGSGGQGSVALPNPSAPATPGSSSLPCDSNSNALMLAEGISFGSVPANLCTFLIQRACTNATLANYFYWYLSIEV 306 (696)
T ss_dssp ----------------------------------------------------CHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccCCHHHHHHHHHHhhChhhHHHHHHHhHhhc
Confidence 01122223333332 25789999999887
Q ss_pred cC--CC----hhHHHHHHHHHHHHHhcCCC----CCchhchHHHHHHHHHHHHHHhhccCCccccccchhHhhHHHHhhc
Q 000134 1641 KS--TI----PSRREAAAEIIQAAKKGSAH----GNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRMM 1710 (2096)
Q Consensus 1641 ~S--~~----~~R~~~~~~Il~~~~~~~~~----~~~~~~li~~~~~l~~~Li~l~~~~~~~~~~~~~l~~~f~~l~~~~ 1710 (2096)
.. .. +....+...|++.+...... .......+.....++++|.+++......+. +-......++...
T Consensus 307 ~~~~~~~~~~~~~~~~~~~il~~~l~~l~~g~~~~~~~~~~l~~Q~~~~~~L~~i~~~ik~~~~---~~~~k~e~L~~~L 383 (696)
T 2x6h_A 307 EEVESVRKQDERAHDMYAMVLKMFLKVLENGNFNLRGIFYNLRKQRRFIDELVKLVKLVAKEPG---NRNKKTEKFQKLL 383 (696)
T ss_dssp CC-----CCHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS---CHHHHHHHHHHHH
T ss_pred cCccccccccchHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHhccCc---cHHHHHHHHHHHh
Confidence 65 11 23355566666655421111 011234566666788888887743211110 0011111222221
Q ss_pred cCCcccccccccccccCCCCCCCCCCCCCCCCCCCCcceEeeecC-ceEEecCCCcceEEEEEecC-CCeeeEEecCCCc
Q 000134 1711 PLGIIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIAD-EAEILSSLQRPKKIVLLGSD-GIKRPFLCKPKDD 1788 (2096)
Q Consensus 1711 ~~~~i~P~~~~l~~~LP~~~~~~~~~~~~~~f~~~~~v~I~~f~~-~v~V~~S~q~PkrI~i~gsD-Gk~y~fL~K~~dD 1788 (2096)
...- +. ...+.. . ..-++|..+.++|.+|.+ .+.|++|+++||+|+|+|+| |+.|+||+|++||
T Consensus 384 ~~~~--~~----~~~l~~----~----~~~~lP~~p~v~I~~~~~~~~~V~~S~~~P~~l~~~gsD~G~~y~~i~K~gDD 449 (696)
T 2x6h_A 384 AEQD--MF----KVNFTN----F----EPIPFPLDPEIYITKIVPMRTSLFKSALMPAKLTFVTSIAHHEYAAIFKHGDD 449 (696)
T ss_dssp HSTT--SS----SSCTTS----C----CCEECSSCTTSEEEEECGGGCEECSSSSCCEEEEEEETTTTCEEEEEEECSSC
T ss_pred cchh--hc----cccccc----C----CCccCCCCCCeEEEEEecCeEEEcccccCCeEEEEEecCCCCceeEEEecCcc
Confidence 1000 00 000100 0 012344456789999985 69999999999999999999 9999999999999
Q ss_pred chhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceeeecCCcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHH
Q 000134 1789 LRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKR 1868 (2096)
Q Consensus 1789 lR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~ 1868 (2096)
+|||+|+||+|++||.+|+++. |+|++++|.|||+++++||||||++ .|+++|+.++ +
T Consensus 450 LRQD~rv~Ql~~lmn~il~~~~----~~L~i~~Y~Vipls~~~GLIE~V~s-~tl~~i~~~~----~------------- 507 (696)
T 2x6h_A 450 LRQDQLILQMITLMDKLLRREN----LDLKLTPYKVLATSSKHGFLQYVDS-CTVAEVLARE----G------------- 507 (696)
T ss_dssp THHHHHHHHHHHHHHHHHHHTT----CCCCCCCCCEEESSTTCEEEECCCC-EEHHHHHHHS----S-------------
T ss_pred cchhHHHHHHHHHHHHHHHhCC----CCcEEeccEEEeccCCCCeeeeCCC-ccHHHHHHhc----C-------------
Confidence 9999999999999999999984 8999999999999999999999975 7999997531 0
Q ss_pred HHHHHhcCCChHHHHHHhhcCCCchHHHHHHHhhCCChhHHH----HHHHHHHHHhhHHHHHhhhccccCCCCCceeeec
Q 000134 1869 IYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWF----RARVAYAHTTAVWSMVGHIVGLGDRHGENILFDS 1944 (2096)
Q Consensus 1869 ~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf~~~f~~p~~w~----~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~ 1944 (2096)
.+++||.+.||++..|| .+|++|++|+|+|||+|||||||||||+|||||
T Consensus 508 -------------------------~l~~~f~~~~p~~~~~~~~~~~ar~nF~~SlA~~Svv~YILGlGDRH~~NILid- 561 (696)
T 2x6h_A 508 -------------------------NIHNFFRKHHPCDNGPYGISAEVMDTYIKSCAGYCVITYLLGVGDRHLDNLLLT- 561 (696)
T ss_dssp -------------------------SHHHHHHHHSBCTTSSSSBCHHHHHHHHHHHHHHHHHHHHHTCCCCCTTTEEEC-
T ss_pred -------------------------hHHHHHHHHCCCccchhhhHHHHHHHHHHHHHHHHHHHHHccCCCCCCcceEEe-
Confidence 15689999999998887 799999999999999999999999999999999
Q ss_pred CCCcEEeeeccccccccCCCCCCCCCCccccHHHHHhhcCCCccc--hHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCc
Q 000134 1945 TTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMIDGLGITGYEG--TFLRVCEITLSVLRTHRETLMSVLETFIHDPLV 2022 (2096)
Q Consensus 1945 ~tG~vvHIDF~~~F~kg~~l~~pE~VPFRLT~nmv~~mG~~G~eG--~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~ 2022 (2096)
.||+++|||||++|+++ +.||.|||||||||+++||+.|+|| .|+.+|+.++++||+|++.|++++++|++||+.
T Consensus 562 ~tG~v~HIDFG~~f~~~---p~pe~VPFRLT~~mv~~mG~~g~eg~~~Fr~~c~~~~~~LR~~~~~il~ll~lml~~~lp 638 (696)
T 2x6h_A 562 TNGKLFHIDFGYILGRD---PKPMPPPMKLSKEMVEAMGGISSEHHHEFRKQCYTAYLHLRRHANVMLNLFSLMVDATVP 638 (696)
T ss_dssp TTSCEEECCCCSCTTCC---SSSCCCSSCCCHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTTCCCT
T ss_pred CCCCEEEEeehhhhccC---CCCcCCCeecCHHHHHHhCCCCcccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHcCCCC
Confidence 59999999999999988 4799999999999999999999998 599999999999999999999999999999999
Q ss_pred ccccccCCCCccccchhHHHHHHHHHHHhhccccccCCCCCCCCCHHHHHHHHHHHHhCcc
Q 000134 2023 EWTKSHKSSGVEVENPHAQRAISNIEARLQGSVVGVGAAPSLPLAVEGQARRLIAEAVSHK 2083 (2096)
Q Consensus 2023 ~W~~~~~~~~~~~~n~~a~~~l~~i~~kL~g~~~~~~~~~~~~lsv~~qV~~LI~~Atd~~ 2083 (2096)
+|.... ..++..+++|+...+.. -....+|..||++|.+..
T Consensus 639 ~~~~~~------------~~~i~~l~~rf~l~lse--------eea~~~~~~lI~~S~~s~ 679 (696)
T 2x6h_A 639 DIALEP------------DKAVKKVEENLQLGLTD--------EEAVQHLQSLLDVSITAV 679 (696)
T ss_dssp TTTSSG------------GGHHHHHHHHHTTTSCH--------HHHHHHHHHHHHHHHHHH
T ss_pred ccccCH------------HHHHHHHHHHhCCCCCH--------HHHHHHHHHHHHHHHhhh
Confidence 996421 25688899999753321 134578999999998754
No 2
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A* 3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A* 3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Probab=100.00 E-value=4.6e-56 Score=592.91 Aligned_cols=469 Identities=19% Similarity=0.275 Sum_probs=338.5
Q ss_pred HHHHHHHHhhccCCcchhhhHHHHHHh---hh--hcC--ccccccCCCChhhhHhHHHHHHHHHHhhcCCCCCchhhhhh
Q 000134 1527 DVLLFYAKGLHRGHKNLFQALPRLLTL---WF--DFG--SICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVL 1599 (2096)
Q Consensus 1527 ~ai~~Y~~sl~~g~~~~~q~lpRlLtL---Wl--~~g--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~iP~~~wl~~l 1599 (2096)
.++.-+++|+...+....+.+..+|.- |- ... ....-- ... -....|.+..-+.+..+|...++.++
T Consensus 446 ~aL~k~l~sv~w~~~~~v~e~~~lL~~~~~W~~~~~~~~~ALeLL----~~~--f~d~~VR~yAV~~L~~~~d~~l~~YL 519 (961)
T 1e7u_A 446 KAYPKLFSSVKWGQQEIVAKTYQLLAKREVWDQSALDVGLTMQLL----DCN--FSDENVRAIAVQKLESLEDDDVLHYL 519 (961)
T ss_dssp GGHHHHHTSSCTTCHHHHHHHHHHHHCCHHHHHSCCCHHHHHHTT----STT--CCCHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHheecCCCCHHHHHHHHHHHhccCCCCCCCCCHHHHHHhc----CCc--CCCHHHHHHHHHHHHhCCHHHHHHHH
Confidence 467778888888876555556677777 83 111 000000 000 01234667777889999999999999
Q ss_pred HHhhhccccCchHHHHHHHHHHHHHHH--hchhhHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCCCchhchHHHHHH
Q 000134 1600 PQLVSRICHQNEEIVRLVKHIITSVLR--QYPQQGLWIMAAVSKSTIPSRREAAAEIIQAAKKGSAHGNSANNLFGQFTS 1677 (2096)
Q Consensus 1600 PQLisRl~h~~~~v~~~l~~il~kv~~--~yPqq~lw~l~~~~~S~~~~R~~~~~~Il~~~~~~~~~~~~~~~li~~~~~ 1677 (2096)
||||+.|.+....-..+..-||.+... ...|+.+|.|.+.+.. .+....+...|++....... ......+.....
T Consensus 520 ~QLVQaLkyE~~~~s~L~~fLl~ra~~n~~i~h~l~W~l~~e~~~-~~~~~~r~~~ll~~~l~~~~--~~~~~~~~~q~~ 596 (961)
T 1e7u_A 520 LQLVQAVKFEPYHDSALARFLLKRGLRNKRIGHFLFWFLRSEIAQ-SRHYQQRFAVILEAYLRGCG--TAMLHDFTQQVQ 596 (961)
T ss_dssp HHHHHHGGGCSSSSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH-CTTTHHHHHHHHHHHHTTSC--HHHHHHHHHHHH
T ss_pred HHHHHHHhhccccCChHHHHHHHHHhcChHHHHHHHHHhhhhccC-ChhHHHHHHHHHHHHHhhcc--HHHHHHHHHHHH
Confidence 999999998643223444555555553 4689999999886632 22334456678887765432 111123344456
Q ss_pred HHHHHHHHhhccCCccccccchhH-hhHHHHhhccCCcccccccccccccCCCCCCCCCCCCCCCCCCCCcceEeee-cC
Q 000134 1678 LIDHLIKLCFHAGQSKSRTINIST-EFSALKRMMPLGIIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGI-AD 1755 (2096)
Q Consensus 1678 l~~~Li~l~~~~~~~~~~~~~l~~-~f~~l~~~~~~~~i~P~~~~l~~~LP~~~~~~~~~~~~~~f~~~~~v~I~~f-~~ 1755 (2096)
+.+.|.++|...........++.. ....++... .....+.+|+... .|+ .+.++|.+| .+
T Consensus 597 ~~~~L~~i~~~ik~~~~~~~~~~~~~~~~l~~~L--------~~l~~i~vP~~~~--------lP~--dP~v~i~~i~~~ 658 (961)
T 1e7u_A 597 VIDMLQKVTIDIKSLSAEKYDVSSQVISQLKQKL--------ENLQNLNLPQSFR--------VPY--DPGLKAGALVIE 658 (961)
T ss_dssp HHHHHHHHHHHSGGGGCCSSCCCHHHHHHHHHHH--------HHHHHTTSCSCEE--------ETT--EEEEEEEEECGG
T ss_pred HHHHHHHHHHHHHhhccccccchhhHHHHHHHHH--------HhhhcCcCCCCcc--------CCC--CCceEEEEeecc
Confidence 777788887543221111111111 111222111 1112234554211 122 345788897 58
Q ss_pred ceEEecCCCcceEEEEEecCCC-----eeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceeeecCC
Q 000134 1756 EAEILSSLQRPKKIVLLGSDGI-----KRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTED 1830 (2096)
Q Consensus 1756 ~v~V~~S~q~PkrI~i~gsDGk-----~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~~ 1830 (2096)
.+.|++|+++|++|+|+|+||+ .|+||+|++||||||+|+||++++||.+|+++ +|+|++++|.|||++++
T Consensus 659 ~~~V~~S~~~P~~l~~~g~Dg~~~~~~~~~~i~K~gDDLRQD~~v~Ql~~lmn~il~~~----~~~L~i~~Y~Vipls~~ 734 (961)
T 1e7u_A 659 KCKVMASKKKPLWLEFKCADPTALSNETIGIIFKHGDDLRQDMLILQILRIMESIWETE----SLDLCLLPYGCISTGDK 734 (961)
T ss_dssp GCEECSSTTCCEEEEEEESCTTCSCCCCEEEEEEESSCCHHHHHHHHHHHHHHHHHHHT----TCCCCCCCCCEEEEETT
T ss_pred eEEEecccCCceEEEEEccCCCcccCCceeEEEecCcccccchhHHHHHHHHHHHHhhc----CCCeEEEeeeEEECCCC
Confidence 8999999999999999999996 89999999999999999999999999999875 68999999999999999
Q ss_pred cceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHHHHHhhCCChhHHH
Q 000134 1831 CGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWF 1910 (2096)
Q Consensus 1831 ~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf~~~f~~p~~w~ 1910 (2096)
+||||||+|+.|+++|+.... |.. +.. -.++|++||.+.+|++.+|+
T Consensus 735 ~GlIE~V~ns~tl~~I~~~~~---g~~-----------------~~f-------------~~~~L~~w~~~~~~~~~~~~ 781 (961)
T 1e7u_A 735 IGMIEIVKDATTIAKIQQSTV---GNT-----------------GAF-------------KDEVLSHWLKEKCPIEEKFQ 781 (961)
T ss_dssp EEEEECCSSEEEHHHHHHHHS---CSS-----------------SCC-------------CSSHHHHHHHHHCCSHHHHH
T ss_pred CCeEEecCCCccHHHHHHhcc---Ccc-----------------ccc-------------chhHHHHHHHHhCCChHHHH
Confidence 999999999999999986531 110 000 12478999999999999999
Q ss_pred HHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCCC-C-CCCCCCccccHHHHHhhcCCCcc
Q 000134 1911 RARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLL-E-KPELVPFRLTQNMIDGLGITGYE 1988 (2096)
Q Consensus 1911 ~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l-~-~pE~VPFRLT~nmv~~mG~~G~e 1988 (2096)
.+|.+|++|+|+|||+||||||||||++|||||+ ||+++|||||++|++++.+ + .||.|||||||||+++||+.|++
T Consensus 782 ~ar~~F~~S~A~ySvv~YILGigDRH~~NILid~-tG~v~HIDFG~~f~~~~~~l~~~pE~vPFRLT~~mv~~mG~~g~e 860 (961)
T 1e7u_A 782 AAVERFVYSCAGYCVATFVLGIGDRHNDNIMISE-TGNLFHIDFGHILGNYKSFLGINKERVPFVLTPDFLFVMGTSGKK 860 (961)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCCGGGEEEET-TCCEEECCCCCC----------CCCCCSSCCCHHHHHHTTCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHccccCCCCcceEEec-CCCEEEEeehhhhccCccccCCCCCCCCcccCHHHHHHhcccCCc
Confidence 9999999999999999999999999999999995 9999999999999998764 4 49999999999999999999999
Q ss_pred -----chHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccccccCCCCccccchhHHHHHHHHHHHhhccccccCCCCC
Q 000134 1989 -----GTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSSGVEVENPHAQRAISNIEARLQGSVVGVGAAPS 2063 (2096)
Q Consensus 1989 -----G~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~~~~~~~~~~~n~~a~~~l~~i~~kL~g~~~~~~~~~~ 2063 (2096)
|.|+.+|+.++++||+|++.|++++++|++||+.+|... ..+..+++|+.--..
T Consensus 861 ~s~~fg~F~~~c~~~~~~LR~~~~~l~~ll~lm~~~~lp~~~~~--------------~~i~~lr~rf~l~~s------- 919 (961)
T 1e7u_A 861 TSLHFQKFQDVCVKAYLALRHHTNLLIILFSMMLMTGMPQLTSK--------------EDIEYIRDALTVGKS------- 919 (961)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHSCSSCCCH--------------HHHHHHHHHTTTTSC-------
T ss_pred cchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCccCch--------------HHHHHHHHHhCCCCC-------
Confidence 899999999999999999999999999999999999631 245677777752111
Q ss_pred CCCCHHHHHHHHHHHHhCc
Q 000134 2064 LPLAVEGQARRLIAEAVSH 2082 (2096)
Q Consensus 2064 ~~lsv~~qV~~LI~~Atd~ 2082 (2096)
.-....++..+|++|.+.
T Consensus 920 -e~eA~~~~~~lI~~s~~~ 937 (961)
T 1e7u_A 920 -EEDAKKYFLDQIEVCRDK 937 (961)
T ss_dssp -HHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHhc
Confidence 112345788999999864
No 3
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=100.00 E-value=8.8e-56 Score=590.29 Aligned_cols=462 Identities=18% Similarity=0.230 Sum_probs=338.3
Q ss_pred HHHHHHHHhhccCCcchhhhHHHHHHhhhhcCccccccCCCChhhh-----HhHHHHHHHHHHhhcCCCCCchhhhhhHH
Q 000134 1527 DVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDL-----KNVNGKVMSIMRGCLKDLPAYQWLTVLPQ 1601 (2096)
Q Consensus 1527 ~ai~~Y~~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~iP~~~wl~~lPQ 1601 (2096)
.++.-+++|+.+.+......+..+|.-|-..... .++ .-.+..|.+..-+.+..+|...|+.++||
T Consensus 440 ~aL~~~l~sv~w~~~~~~~~~~~ll~~W~~~~~~---------~ALeLL~~~f~d~~Vr~yAv~~L~~~~d~~l~~yL~Q 510 (940)
T 2wxf_A 440 EALARLLLVTKWNKHEDVAQMLYLLCSWPELPVL---------SALELLDFSFPDCYVGSFAIKSLRKLTDDELFQYLLQ 510 (940)
T ss_dssp GGHHHHHTTSCTTCHHHHHHHHHHHHTCCCCCHH---------HHHHHTSTTCCCHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred hHHHHHHhccCCCCHHHHHHHHHHHccCCCCCHH---------HHHHhcCCcCCCHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4677788888877655444556777788433210 010 01134577777788999999999999999
Q ss_pred hhhccccCchHHHHHHHHHHHHHHHh--chhhHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCCCchhchHHHHHHHH
Q 000134 1602 LVSRICHQNEEIVRLVKHIITSVLRQ--YPQQGLWIMAAVSKSTIPSRREAAAEIIQAAKKGSAHGNSANNLFGQFTSLI 1679 (2096)
Q Consensus 1602 LisRl~h~~~~v~~~l~~il~kv~~~--yPqq~lw~l~~~~~S~~~~R~~~~~~Il~~~~~~~~~~~~~~~li~~~~~l~ 1679 (2096)
||+.|.|.+..-..+..-||.+...+ ++|+.+|+|.+.+.+ +....+...+++.+..... ... ..+.....+.
T Consensus 511 LVQaLkyE~~~~s~L~~fLl~ra~~n~~i~h~l~W~l~~e~~~--~~~~~r~~~ile~~~~~~~--~~~-~~l~~q~~~~ 585 (940)
T 2wxf_A 511 LVQVLKYESYLDCELTKFLLGRALANRKIGHFLFWHLRSEMHV--PSVALRFGLIMEAYCRGST--HHM-KVLMKQGEAL 585 (940)
T ss_dssp HHHHGGGCSSSSCHHHHHHHHHHHHCHHHHHHHHHHHHTTTTC--HHHHHHHHHHHHHHHHHCH--HHH-HHHHHHHHHH
T ss_pred HHHHHhhccccccHHHHHHHHHHHhChHHHHHHHHHheecccC--chHHHHHHHHHHHHHhhcH--HHH-HHHHHHHHHH
Confidence 99999998543345666677777744 899999999887654 4456677888888765432 111 2333344677
Q ss_pred HHHHHHhhccCCccccccchhHhhHHHHhhccCCcccccccccccccCCCCCCCCCCCCCCCCCCCCcceEeeec-CceE
Q 000134 1680 DHLIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIA-DEAE 1758 (2096)
Q Consensus 1680 ~~Li~l~~~~~~~~~~~~~l~~~f~~l~~~~~~~~i~P~~~~l~~~LP~~~~~~~~~~~~~~f~~~~~v~I~~f~-~~v~ 1758 (2096)
++|.+++..... .....+-.+....|++.+...- . ...+|+ .+. |..+.++|.+|. +.+.
T Consensus 586 ~~L~~i~~~ik~-~~~~~~r~k~~~~L~~~l~~~~------~-~~~~~~---------~~l--P~~P~~~I~~~~~~~~~ 646 (940)
T 2wxf_A 586 SKLKALNDFVKV-SSQKTTKPQTKEMMHMCMRQET------Y-MEALSH---------LQS--PLDPSTLLEEVCVEQCT 646 (940)
T ss_dssp HHHHHHHHHHHH-HTTTSCHHHHHHHHHHHHTSHH------H-HHHHSS---------EEE--TTEEEEEECEECGGGCE
T ss_pred HHHHHHHHHHhh-ccccccHHHHHHHHHHHHhccc------h-hhccCC---------CCC--CCCCceeEEEeccCceE
Confidence 788877753210 0000111122333444322100 0 001111 112 224568999997 7899
Q ss_pred EecCCCcceEEEEEecC---CCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceeeecCCcceeE
Q 000134 1759 ILSSLQRPKKIVLLGSD---GIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVE 1835 (2096)
Q Consensus 1759 V~~S~q~PkrI~i~gsD---Gk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~~~GLIE 1835 (2096)
|++|+++||+|+|+|+| |+.|+|++|++||||||+|+||++++||.+|+++ +|+|.+++|.|||+++++||||
T Consensus 647 V~~S~~~P~~l~~~gsD~~~G~~~~~i~K~gDDLRqD~rv~Ql~~lmn~il~~~----~~~L~i~~Y~Vipls~~~GlIE 722 (940)
T 2wxf_A 647 FMDSKMKPLWIMYSSEEAGSAGNVGIIFKNGDDLRQDMLTLQMIQLMDVLWKQE----GLDLRMTPYGCLPTGDRTGLIE 722 (940)
T ss_dssp ECSSTTCCEEEEEECTTTGGGGCEEEEEEESSCCHHHHHHHHHHHHHHHHHHHT----TCCCCCCCCCEEEEETTEEEEE
T ss_pred EcccccCCeEEEEEecCcCCCcceeEEEecCcccchhHHHHHHHHHHHHHHHhC----CCCeEEEeeeEEEecCCCCeEe
Confidence 99999999999999999 9999999999999999999999999999999997 4799999999999999999999
Q ss_pred ecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCC-chHHHHHHHhhCCChhHHHHHHH
Q 000134 1836 WVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMF-PPVFHKWFLTTFSEPAAWFRARV 1914 (2096)
Q Consensus 1836 wv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~pvl~~wf~~~f~~p~~w~~~R~ 1914 (2096)
||+|+.|+++|+.+ .+.... ...+ .+++++||.+.+|+ ..|+.+|.
T Consensus 723 ~V~ns~tl~~I~~~----~~~~~~----------------------------~~~f~~~~l~~~~~~~~~~-~~~~~a~~ 769 (940)
T 2wxf_A 723 VVLHSDTIANIQLN----KSNMAA----------------------------TAAFNKDALLNWLKSKNPG-EALDRAIE 769 (940)
T ss_dssp CCSSEEEHHHHHTC----CSSSTT----------------------------CCSSGGGHHHHHHHHHSCT-THHHHHHH
T ss_pred ECCCCccHHHHHHh----hccchh----------------------------hhccCchhHHHHHHHhCCH-HHHHHHHH
Confidence 99999999998642 111100 0012 24789999999954 67778999
Q ss_pred HHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccC-CCCC-CCCCCccccHHHHHhhcCC--Ccc--
Q 000134 1915 AYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGL-LLEK-PELVPFRLTQNMIDGLGIT--GYE-- 1988 (2096)
Q Consensus 1915 ~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~-~l~~-pE~VPFRLT~nmv~~mG~~--G~e-- 1988 (2096)
+|++|+|+|||+|||||||||||+|||||+ ||+++|||||++|+.++ .+.. ||.|||||||||+++||+. |.+
T Consensus 770 ~F~~S~A~~Svv~YILGlgDRH~~NILid~-tG~v~HIDFG~~f~~~~~~l~~~pE~VPFRLT~~mv~~mg~g~~~~s~~ 848 (940)
T 2wxf_A 770 EFTLSCAGYCVATYVLGIGDRHSDNIMIRE-SGQLFHIDFGHFLGNFKTKFGINRERVPFILTYDFVHVIQQGKTNNSEK 848 (940)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCGGGEEEET-TSCEEECCCCCCTTCC---------CCCCCCCHHHHHHHTTTCSCCHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCCcccEEEec-CCCEEEEeehhhhcccccccCCCCCCCCccCCHHHHHHHcCCCCCCCcc
Confidence 999999999999999999999999999995 99999999999999763 4555 9999999999999999863 444
Q ss_pred -chHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccccccCCCCccccchhHHHHHHHHHHHhhccccccCCCCCCCCC
Q 000134 1989 -GTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSSGVEVENPHAQRAISNIEARLQGSVVGVGAAPSLPLA 2067 (2096)
Q Consensus 1989 -G~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~~~~~~~~~~~n~~a~~~l~~i~~kL~g~~~~~~~~~~~~ls 2067 (2096)
|.|+.+|+.++++||+|++.|+++|++|++||+.+|... ..+..+++|+.--.. +-.
T Consensus 849 ~g~Fr~~c~~~~~~LR~~~~~ll~ll~lml~~~lp~~~~~--------------~~i~~l~~r~~l~~s--------e~e 906 (940)
T 2wxf_A 849 FERFRGYCERAYTILRRHGLLFLHLFALMRAAGLPELSCS--------------KDIQYLKDSLALGKT--------EEE 906 (940)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHGGGCCTTSCSH--------------HHHHHHHHHHTTTSC--------HHH
T ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCCcccCch--------------HHHHHHHHHhCCCCC--------HHH
Confidence 899999999999999999999999999999999999641 346677788752111 112
Q ss_pred HHHHHHHHHHHHhC
Q 000134 2068 VEGQARRLIAEAVS 2081 (2096)
Q Consensus 2068 v~~qV~~LI~~Atd 2081 (2096)
...++..+|++|.+
T Consensus 907 a~~~~~~~i~~s~~ 920 (940)
T 2wxf_A 907 ALKHFRVKFNEALR 920 (940)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 34567899999873
No 4
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=100.00 E-value=2e-55 Score=559.69 Aligned_cols=462 Identities=18% Similarity=0.290 Sum_probs=332.8
Q ss_pred HHHHHHHHhhccCCcchhhhHHHHHHhhhhcCccccccCCCChhhhHhHHHHHHHHHHhhcCCCCCchhhhhhHHhhhcc
Q 000134 1527 DVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRI 1606 (2096)
Q Consensus 1527 ~ai~~Y~~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~iP~~~wl~~lPQLisRl 1606 (2096)
.|+.-|++|+......-......+|.-|-.......-.- -.. .-.+..|.+..-+.+..++....+.+|||||+.+
T Consensus 63 ~aL~kfL~sV~W~~~~e~~~a~~LL~~W~~i~~~dALEL--L~~--~f~d~~VR~yAV~~L~~~~D~eL~lYLlQLVQAL 138 (614)
T 3ls8_A 63 KALTKFLKCVNWDLPQEAKQALELLGKWKPMDVEDSLEL--LSS--HYTNPTVRRYAVARLRQADDEDLLMYLLQLVQAL 138 (614)
T ss_dssp GGHHHHHTTCCTTSHHHHHHHHHHHHHSCCCCHHHHGGG--GST--TCCCHHHHHHHHHHHTTSCHHHHHHTHHHHHHHG
T ss_pred hHHHHHhccCCCCCHHHHHHHHHHHhhCCCCCHHHHHHh--Ccc--cCCCHHHHHHHHHHHHhCChHHHHHHHHHHHHhh
Confidence 477888999988876544334589999954432100000 000 0112346666667789999999999999999999
Q ss_pred ccCchHH--------------------------------------------------------------HHHHHHHHHHH
Q 000134 1607 CHQNEEI--------------------------------------------------------------VRLVKHIITSV 1624 (2096)
Q Consensus 1607 ~h~~~~v--------------------------------------------------------------~~~l~~il~kv 1624 (2096)
.+.+-.- ..+..-+|.|.
T Consensus 139 KyE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~La~FLi~RA 218 (614)
T 3ls8_A 139 KYENFDDIKNGLEPTKKDSQSSVSENVSNSGINSAEIDSSQIITSPLPSVSSPPPASKTKEVPDGENLEQDLCTFLISRA 218 (614)
T ss_dssp GGSCHHHHHHTC------------------------CCGGGSTTCCCCC-------------------CCCHHHHHHHHH
T ss_pred hcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCChHHHHHHHHH
Confidence 8764322 23566777777
Q ss_pred HHh--chhhHHHHHHHhhcCCC-----hhHHHHHHHHHHHHHhcCCCCC----chhchHHHHHHHHHHHHHHhhccCCcc
Q 000134 1625 LRQ--YPQQGLWIMAAVSKSTI-----PSRREAAAEIIQAAKKGSAHGN----SANNLFGQFTSLIDHLIKLCFHAGQSK 1693 (2096)
Q Consensus 1625 ~~~--yPqq~lw~l~~~~~S~~-----~~R~~~~~~Il~~~~~~~~~~~----~~~~li~~~~~l~~~Li~l~~~~~~~~ 1693 (2096)
..+ --+..+|++.+-+.... +.-.+++..++..+......+. .....+.....+.+.|.+++.......
T Consensus 219 l~n~~ig~~lyW~L~~E~~~~~~~~~~~~~~~~Y~~vl~~~l~~l~~g~~~~~~~r~~L~~Q~~~~~~L~~l~~~v~~~~ 298 (614)
T 3ls8_A 219 CKNSTLANYLYWYVIVECEDQDTQQRDPKTHEMYLNVMRRFSQALLKGDKSVRVMRSLLAAQQTFVDRLVHLMKAVQRES 298 (614)
T ss_dssp HTCHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hcCHHHHHHHHhheeeeccCccccccchHHHHHHHHHHHHHHHHHHccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 654 35677999988765421 1112344445444332111111 112233344466777777664211100
Q ss_pred ccccchhHhhHHHHhhccCCcccccccccccccCCCCCCCCCCCCCCCCCCCCcceEeeecC-ceEEecCCCcceEEEEE
Q 000134 1694 SRTINISTEFSALKRMMPLGIIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIAD-EAEILSSLQRPKKIVLL 1772 (2096)
Q Consensus 1694 ~~~~~l~~~f~~l~~~~~~~~i~P~~~~l~~~LP~~~~~~~~~~~~~~f~~~~~v~I~~f~~-~v~V~~S~q~PkrI~i~ 1772 (2096)
. +..+.-..++.+... |. ...++.. ..-++|..+.++|.+|.+ .+.|++|+++||+|+|+
T Consensus 299 ~---~~~kk~e~L~~~L~~----~~----~~~l~~~--------~~~~lPl~P~v~I~~i~p~~~~V~~Sk~~P~~l~~~ 359 (614)
T 3ls8_A 299 G---NRKKKNERLQALLGD----NE----KMNLSDV--------ELIPLPLEPQVKIRGIIPETATLFKSALMPAQLFFK 359 (614)
T ss_dssp S---CHHHHHHHHHHHHHC----HH----HHCCSSC--------SSEEETTEEEEEEEEECGGGCEECSSTTCCEEEEEE
T ss_pred c---chHHHHHHHHHHHhc----hh----hcccccC--------CCCCCCCCCceEEEEEecCeeEEeecccCeEEEEEE
Confidence 0 000111122222110 00 0111110 112455567899999985 79999999999999999
Q ss_pred ecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceeeecCCcceeEecCCCccHHHHHHHHHH
Q 000134 1773 GSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYI 1852 (2096)
Q Consensus 1773 gsDGk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~~~GLIEwv~n~~tl~~il~~~~~ 1852 (2096)
|+||+.|+|++|++||||||+|+||++++||.+|+++ +++|.+++|.|||+++++||||||++ .|+.+++.+
T Consensus 360 gsDG~~y~~i~K~gDDLRQD~~~~Ql~~l~n~il~~~----~ldL~i~~Y~Vipls~~~GlIE~V~~-~tl~~il~~--- 431 (614)
T 3ls8_A 360 TEDGGKYPVIFKHGDDLRQDQLILQIISLMDKLLRKE----NLDLKLTPYKVLATSTKHGFMQFIQS-VPVAEVLDT--- 431 (614)
T ss_dssp ETTSCEEEEEEEESSCCHHHHHHHHHHHHHHHHHHHT----TCCCCCCCCCEEESSSSEEEEECCCC-EEHHHHHHH---
T ss_pred ccCCCEEEEEEecCCcchHHHHHHHHHHHHHHHHHhc----CCCceeeccEEEEecCCCceEEEeCC-ccHHHHHHc---
Confidence 9999999999999999999999999999999999987 47999999999999999999999997 578777642
Q ss_pred hcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHHHHHhhCCChhHH----HHHHHHHHHHhhHHHHHhh
Q 000134 1853 SCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAW----FRARVAYAHTTAVWSMVGH 1928 (2096)
Q Consensus 1853 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf~~~f~~p~~w----~~~R~~ft~S~Av~S~vgY 1928 (2096)
.| .+.+||.+.+|++..| +.+|.+|++|+|+|||+||
T Consensus 432 -~~--------------------------------------~l~~~f~~~~~~~~~~~~~~~~a~~nF~~S~A~ySvv~Y 472 (614)
T 3ls8_A 432 -EG--------------------------------------SIQNFFRKYAPSENGPNGISAEVMDTYVKSCAGYCVITY 472 (614)
T ss_dssp -TS--------------------------------------SHHHHHHHHSBCTTSGGGBCHHHHHHHHHHHHHHHHHHH
T ss_pred -cC--------------------------------------hHHHHHHHhCCCccccccccHHHHHHHHHHHHHHhHhhe
Confidence 00 2456888888887766 4799999999999999999
Q ss_pred hccccCCCCCceeeecCCCcEEeeeccccccccCCCCCCCCCCccccHHHHHhhcCCCccc--hHHHHHHHHHHHHHhCh
Q 000134 1929 IVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMIDGLGITGYEG--TFLRVCEITLSVLRTHR 2006 (2096)
Q Consensus 1929 ILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l~~pE~VPFRLT~nmv~~mG~~G~eG--~F~~~~~~t~~~LR~~~ 2006 (2096)
||||||||++||||| .||+++|||||++|+++ ++||.||||||+||+++||+.|+|| .|+.+|+.++.+||+|.
T Consensus 473 ILGigDRH~~NILld-~tG~v~HIDFG~~f~~~---p~pe~vPFRLT~~mv~~mG~~~~e~f~~Fr~~c~~~~~~LR~~~ 548 (614)
T 3ls8_A 473 ILGVGDRHLDNLLLT-KTGKLFHIDFGYILGRD---PKPLPPPMKLNKEMVEGMGGTQSEQYQEFRKQCYTAFLHLRRYS 548 (614)
T ss_dssp HHTCCCCCTTSEEEC-TTSCEEECCCSSCTTCC---SSSSCCSSCCCHHHHHHTTCTTSHHHHHHHHHHHHHHHHHHHTH
T ss_pred eeeccCCCCcceeEc-CCCCEeeeehHHhhccC---CCCCCCCeecCHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHCH
Confidence 999999999999999 69999999999999987 5799999999999999999999997 99999999999999999
Q ss_pred hhHHHHHHHHhcCCCcccccccCCCCccccchhHHHHHHHHHHHhhccccccCCCCCCCCCHHHHHHHHHHHHhCc
Q 000134 2007 ETLMSVLETFIHDPLVEWTKSHKSSGVEVENPHAQRAISNIEARLQGSVVGVGAAPSLPLAVEGQARRLIAEAVSH 2082 (2096)
Q Consensus 2007 ~~L~~iLe~fl~Dpl~~W~~~~~~~~~~~~n~~a~~~l~~i~~kL~g~~~~~~~~~~~~lsv~~qV~~LI~~Atd~ 2082 (2096)
+.|++++++|+.+++.+|.... ..++..+++|+.--.. .--...++..||+++.+.
T Consensus 549 ~~il~l~~lM~~s~lp~~~~~~------------~~~i~~l~~rf~l~ls--------e~ea~~~~~~lI~~S~~s 604 (614)
T 3ls8_A 549 NLILNLFSLMVDANIPDIALEP------------DKTVKKVQDKFRLDLS--------DEEAVHYMQSLIDESVHA 604 (614)
T ss_dssp HHHHHHHHTTTTSCCHHHHTSG------------GGHHHHHHHHTTTTSC--------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCccccCh------------HHHHHHHHHHcCCCCC--------HHHHHHHHHHHHHHHHhh
Confidence 9999999999999999986421 2568888888863221 112446788999988654
No 5
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=100.00 E-value=2.5e-55 Score=589.20 Aligned_cols=468 Identities=18% Similarity=0.240 Sum_probs=343.3
Q ss_pred HHHHHHHHhhccCCcchhhhHHHHHHhhhhcCccccccCCCChhhhHhHHHHHHHHHHhhcCCCCCchhhhhhHHhhhcc
Q 000134 1527 DVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRI 1606 (2096)
Q Consensus 1527 ~ai~~Y~~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~iP~~~wl~~lPQLisRl 1606 (2096)
.++.-+++|+.+.+......+..+|.-|-.......-. --... -.+..|.+..-+.+..+|...++.+|||||+.|
T Consensus 593 ~aL~k~l~sv~w~~~~e~~e~~~lL~~W~~i~p~~ALe--LL~~~--f~d~~VR~yAV~~L~~~~d~~l~~yLpQLVQaL 668 (1092)
T 2y3a_A 593 QSLPKLLLSIKWNKLEDVAQLQALLQIWPKLPPREALE--LLDFN--YPDQYVREYAVGCLRQMSDEELSQYLLQLVQVL 668 (1092)
T ss_dssp GGHHHHHHHSCTTCHHHHHHHHHHHHTSCCCCHHHHGG--GGSTT--CCCTTHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHccCCCCCHHHHHH--hcCcc--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 47777888888876654455667888884332100000 00000 012345566667788999999999999999999
Q ss_pred ccCchHHHHHHHHHHHHHHHh--chhhHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCCCchhchHHHHHHHHHHHHH
Q 000134 1607 CHQNEEIVRLVKHIITSVLRQ--YPQQGLWIMAAVSKSTIPSRREAAAEIIQAAKKGSAHGNSANNLFGQFTSLIDHLIK 1684 (2096)
Q Consensus 1607 ~h~~~~v~~~l~~il~kv~~~--yPqq~lw~l~~~~~S~~~~R~~~~~~Il~~~~~~~~~~~~~~~li~~~~~l~~~Li~ 1684 (2096)
.|.......+..-||.+...+ ++|+.+|+|.+.+.. +....+...+++.+...... .. ..+.....++++|.+
T Consensus 669 kyE~~~~s~L~~fLl~ra~~n~~i~h~l~W~L~~e~~~--~~~~~r~~~lle~~~~~~~~--~~-~~l~~Q~~~~~~L~~ 743 (1092)
T 2y3a_A 669 KYEPFLDCALSRFLLERALDNRRIGQFLFWHLRSEVHT--PAVSVQFGVILEAYCRGSVG--HM-KVLSKQVEALNKLKT 743 (1092)
T ss_dssp HHCSSSSCHHHHHHHHHHTSCSSHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHTTT--TH-HHHHHHHHHHHHHHH
T ss_pred hcccccccHHHHHHHHHHhhChHHHHHHHHHeeecccC--chHHHHHHHHHHHHHhhcHH--HH-HHHHHHHHHHHHHHH
Confidence 987644356677777777764 799999999988754 44556777888887765432 22 233333467778887
Q ss_pred HhhccCCccccccchhHhhHHHHhhccCCcccccccccccccCCCCCCCCCCCCCCCCCCCCcceEeeec-CceEEecCC
Q 000134 1685 LCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIA-DEAEILSSL 1763 (2096)
Q Consensus 1685 l~~~~~~~~~~~~~l~~~f~~l~~~~~~~~i~P~~~~l~~~LP~~~~~~~~~~~~~~f~~~~~v~I~~f~-~~v~V~~S~ 1763 (2096)
+|..... ..+..+-.+....|++.+...- . ...+|+ .+ .|..+.++|.+|. +.+.|++|+
T Consensus 744 is~~ik~-~~~~~~r~k~~e~L~~~l~~~~------~-~~~~~~---------~~--lP~~P~v~I~~~~~~~~~V~~S~ 804 (1092)
T 2y3a_A 744 LNSLIKL-NAVKLSRAKGKEAMHTCLKQSA------Y-REALSD---------LQ--SPLNPCVILSELYVEKCKYMDSK 804 (1092)
T ss_dssp HHHHHHH-HHHHSCHHHHHHHHHHHHHSTT------H-HHHTSS---------SC--CSSCSSBCCCCCCGGGCEECSST
T ss_pred HHHHHhh-ccccccHHHHHHHHHHHhhccc------h-hhcCCC---------CC--CCCCCceEEEEEecCceEEeccc
Confidence 7743210 0000111112233443321100 0 011121 12 2335778999997 689999999
Q ss_pred CcceEEEEEecC--CCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceeeecCCcceeEecCCCc
Q 000134 1764 QRPKKIVLLGSD--GIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTR 1841 (2096)
Q Consensus 1764 q~PkrI~i~gsD--Gk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~~~GLIEwv~n~~ 1841 (2096)
++||+|+|+|+| |+.|+||+|++||||||+|+||++++||.+|+++ +|+|.+++|.|||+++++||||||+|+.
T Consensus 805 ~~P~rL~~~gsD~~G~~y~~L~K~gDDLRQD~rv~Ql~~lmn~ll~~~----~~~L~i~~Y~Vipls~~~GLIE~V~ns~ 880 (1092)
T 2y3a_A 805 MKPLWLVYSSRAFGEDSVGVIFKNGDDLRQDMLTLQMLRLMDLLWKEA----GLDLRMLPYGCLATGDRSGLIEVVSTSE 880 (1092)
T ss_dssp TCCEEEEEECTTTSSSEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHH----SCCCCCCCCCEECCSSSCCEEECCTTCC
T ss_pred cCceEEEEEecCCCCceeeEEEecCcccchhHHHHHHHHHHHHHHHhC----CCCeEEecceEEEecCCCCeEeeCCCCc
Confidence 999999999999 9999999999999999999999999999999987 4799999999999999999999999999
Q ss_pred cHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHHHHHhhCCChhHHHHHHHHHHHHhh
Q 000134 1842 GLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTA 1921 (2096)
Q Consensus 1842 tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf~~~f~~p~~w~~~R~~ft~S~A 1921 (2096)
|+++|+.+ .+.... .+ ..-.+++++||.+.++ +..|+.+|.+|++|+|
T Consensus 881 TL~~I~~~----~~~~~~--------------~~-------------~f~~~~L~~~~~~~~~-~~~~~~ar~nF~~SlA 928 (1092)
T 2y3a_A 881 TIADIQLN----SSNVAA--------------TA-------------AFNKDALLNWLKEYNS-GDDLDRAIEEFTLSCA 928 (1092)
T ss_dssp BHHHHHSS----SCTTTT--------------TS-------------CSSTTHHHHHHHHHCC-THHHHHHHHHHHHHHH
T ss_pred cHHHHHHh----hccchh--------------hh-------------ccCchHHHHHHHHhCC-HHHHHHHHHHHHHHHH
Confidence 99998642 111100 00 0113578999999994 4678899999999999
Q ss_pred HHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccC-CCC-CCCCCCccccHHHHHhhcCC--Ccc---chHHHH
Q 000134 1922 VWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGL-LLE-KPELVPFRLTQNMIDGLGIT--GYE---GTFLRV 1994 (2096)
Q Consensus 1922 v~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~-~l~-~pE~VPFRLT~nmv~~mG~~--G~e---G~F~~~ 1994 (2096)
+|||+|||||||||||+|||||+ ||+++|||||++|+.++ .+. .||.|||||||||+++||+. |.+ |.|+.+
T Consensus 929 ~ySvv~YILGlGDRH~~NILid~-tG~v~HIDFG~~f~~~~~~l~~~pE~VPFRLT~~mv~~mg~g~~~~s~~fg~Fr~~ 1007 (1092)
T 2y3a_A 929 GYCVASYVLGIGDRHSDNIMVKK-TGQLFHIDFGHILGNFKSKFGIKRERVPFILTYDFIHVIQQGKTGNTEKFGRFRQC 1007 (1092)
T ss_dssp HHHHHHHHTTCCCCCTTTEEECT-TSCEEECCCSCCSSCCCCGGGCCCCCCCCCCCHHHHHHHHTTCSSCSSSTTHHHHH
T ss_pred HHHHHHHHhcCCCCCCccEEEec-CCCEEEEeehhhhhcCCccCCCCCCCCCccCCHHHHHHHccCCCCCCcchhhHHHH
Confidence 99999999999999999999995 99999999999999763 454 49999999999999999753 454 999999
Q ss_pred HHHHHHHHHhChhhHHHHHHHHhcCCCcccccccCCCCccccchhHHHHHHHHHHHhhccccccCCCCCCCCCHHHHHHH
Q 000134 1995 CEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSSGVEVENPHAQRAISNIEARLQGSVVGVGAAPSLPLAVEGQARR 2074 (2096)
Q Consensus 1995 ~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~~~~~~~~~~~n~~a~~~l~~i~~kL~g~~~~~~~~~~~~lsv~~qV~~ 2074 (2096)
|+.++++||+|++.|++++++|++||+.+|... ..+..+++|+.--.. .-....++..
T Consensus 1008 c~~a~~~LR~~~~~Il~ll~lml~~~Lp~~~~~--------------~~i~~lr~rf~l~~s--------eeeA~~~~~~ 1065 (1092)
T 2y3a_A 1008 CEDAYLILRRHGNLFITLFALMLTAGLPELTSV--------------KDIQYLKDSLALGKS--------EEEALKQFKQ 1065 (1092)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHTSTTCCSSCSSH--------------HHHHHHHHHTTCSSC--------HHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHhCCCCccccch--------------hHHHHHHHhhCCCCC--------HHHHHHHHHH
Confidence 999999999999999999999999999999641 346667777752111 1123456789
Q ss_pred HHHHHhC
Q 000134 2075 LIAEAVS 2081 (2096)
Q Consensus 2075 LI~~Atd 2081 (2096)
+|++|.+
T Consensus 1066 ~I~~s~~ 1072 (1092)
T 2y3a_A 1066 KFDEALR 1072 (1092)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999873
No 6
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=100.00 E-value=1.3e-51 Score=548.22 Aligned_cols=467 Identities=17% Similarity=0.206 Sum_probs=328.0
Q ss_pred HHHHHHHHhhccCCcchhhhHHHHHHhhhhcCccccccCCCChhhhHhHHHHHHHHHHhhc-CCCCCchhhhhhHHhhhc
Q 000134 1527 DVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCL-KDLPAYQWLTVLPQLVSR 1605 (2096)
Q Consensus 1527 ~ai~~Y~~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~iP~~~wl~~lPQLisR 1605 (2096)
.++.-+++|+...+......+..+|.-|-.......-.- -.. .-.+..|.+..-+.+ ..+|....+..|||||+.
T Consensus 586 ~aL~k~L~sV~W~~~~e~~e~~~LL~~W~~i~~~~ALeL--L~~--~f~d~~VR~yAV~~L~~~~~ddeLl~YLlQLVQA 661 (1091)
T 3hhm_A 586 EILPKLLLSVKWNSRDEVAQMYCLVKDWPPIKPEQAMEL--LDC--NYPDPMVRGFAVRCLEKYLTDDKLSQYLIQLVQV 661 (1091)
T ss_dssp GGHHHHHTTSCTTCHHHHHHHHHHHHTCCCCCHHHHHHT--TST--TCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHG
T ss_pred hHHHHHheeCCCCCHHHHHHHHHHHhcCCCCCHHHHHHh--Ccc--cCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 578888888888776544456688888843321100000 000 001234555555667 789999999999999999
Q ss_pred cccCchHHHHHHHHHHHHHHHh--chhhHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCCCchhchHHHHHHHHHHHH
Q 000134 1606 ICHQNEEIVRLVKHIITSVLRQ--YPQQGLWIMAAVSKSTIPSRREAAAEIIQAAKKGSAHGNSANNLFGQFTSLIDHLI 1683 (2096)
Q Consensus 1606 l~h~~~~v~~~l~~il~kv~~~--yPqq~lw~l~~~~~S~~~~R~~~~~~Il~~~~~~~~~~~~~~~li~~~~~l~~~Li 1683 (2096)
|.+....-..+..-||.|..++ .-|+.+|+|.+-+.... -..+...+++.....+. .....+..| ..+.+.|.
T Consensus 662 LKyE~~~ds~La~FLl~RAl~n~~igh~lfW~L~~E~~~~~--~~~r~~~lLe~~~~~~~--~~~~~l~rQ-~~~~~~L~ 736 (1091)
T 3hhm_A 662 LKYEQYLDNLLVRFLLKKALTNQRIGHFFFWHLKSEMHNKT--VSQRFGLLLESYCRACG--MYLKHLNRQ-VEAMEKLI 736 (1091)
T ss_dssp GGGCSSSSCHHHHHHHHHHTTCHHHHHHHHHHHHTTTTCTT--THHHHHHHHHHHHHHSC--THHHHHHHH-HHHHHHHH
T ss_pred HhhccccccHHHHHHHHHHhhCHHHHHHHHHHeeecccCch--HHHHHHHHHHHHHhhCH--HHHHHHHHH-HHHHHHHH
Confidence 9987533245555666665543 57888999988764432 23456677777765443 222233333 45777777
Q ss_pred HHhhccCCccccccchhHhhHHHHhhccCCcccccccccccccCCCCCCCCCCCCCCCCCCCCcceEeeec-CceEEecC
Q 000134 1684 KLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIA-DEAEILSS 1762 (2096)
Q Consensus 1684 ~l~~~~~~~~~~~~~l~~~f~~l~~~~~~~~i~P~~~~l~~~LP~~~~~~~~~~~~~~f~~~~~v~I~~f~-~~v~V~~S 1762 (2096)
+++........ ..+-...-..++..+... .. ...+. . -+.|..+.++|.+|. +.+.|++|
T Consensus 737 ~is~~ik~~~~-~~~~~~k~~~L~~~L~~~---~~-----~~~~~--------~--~~lPl~P~~~I~~i~~~~~~V~~S 797 (1091)
T 3hhm_A 737 NLTDILKQEKK-DETQKVQMKFLVEQMRRP---DF-----MDALQ--------G--FLSPLNPAHQLGNLRLEECRIMSS 797 (1091)
T ss_dssp HHHHHTTSTTC-CSCHHHHHHHHHHHHHSH---HH-----HHHSS--------S--EEETTEEEEEECSBCGGGCEECCS
T ss_pred HHHHHHhhhcc-ccchHHHHHHHHHHHhcc---ch-----hhccc--------C--CCCCCCcceEEEEEeeceEEEeec
Confidence 77754322110 000011011122211000 00 00000 0 012334668999997 67999999
Q ss_pred CCcceEEEEEecC--CCee----eEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceeeecCCcceeEe
Q 000134 1763 LQRPKKIVLLGSD--GIKR----PFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEW 1836 (2096)
Q Consensus 1763 ~q~PkrI~i~gsD--Gk~y----~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~~~GLIEw 1836 (2096)
+++|++|+|+|+| |+.| .|++|++||||||+|+||++++||.+|++++ ++|.+++|.|||+++++|||||
T Consensus 798 ~~~P~~L~f~g~D~~G~~y~~~~~~i~K~gDDLRQD~~v~Qli~lmn~il~~~~----~dL~l~~Y~Vip~s~~~GlIE~ 873 (1091)
T 3hhm_A 798 AKRPLWLNWENPDIMSELLFQNNEIIFKNGDDLRQDMLTLQIIRIMENIWQNQG----LDLRMLPYGCLSIGDCVGLIEV 873 (1091)
T ss_dssp SSCCEEEEECCCSTTSTTTSCCEEEEEEESSCCHHHHHHHHHHHHHHHHHHTTT----CCCCCCCCCEEEEETTEEEEEC
T ss_pred ccCcEEEEEecCCCCCccccccceEEEEcCcchhHHHHHHHHHHHHHHHHHhCC----CCceEeeeeEEEccCCCcceee
Confidence 9999999999998 8999 9999999999999999999999999999984 8999999999999999999999
Q ss_pred cCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHHHHHhhCCChhHHHHHHHHH
Q 000134 1837 VPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAY 1916 (2096)
Q Consensus 1837 v~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf~~~f~~p~~w~~~R~~f 1916 (2096)
|+|+.|+++|+.+. |... .. ..-++++++||.+.| ++..|+.+|.+|
T Consensus 874 V~ns~Tl~~I~~~~----~~~~---------------~~-------------~f~~~~L~~~f~~~~-~~~~~~~ar~nF 920 (1091)
T 3hhm_A 874 VRNSHTIMQIQCKG----GLKG---------------AL-------------QFNSHTLHQWLKDKN-KGEIYDAAIDLF 920 (1091)
T ss_dssp CSSEEEHHHHHHSC----TTTC---------------TT-------------CCCTTHHHHHHHTTS-CTTSHHHHHHHH
T ss_pred cCCchhHHHHHHhh----Cccc---------------cc-------------ccCchHHHHHHHhcC-ChHHHHHHHHHH
Confidence 99999999997531 1100 00 001357899999999 666789999999
Q ss_pred HHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccC-CC-CCCCCCCccccHHHHHhhcC--CCcc----
Q 000134 1917 AHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGL-LL-EKPELVPFRLTQNMIDGLGI--TGYE---- 1988 (2096)
Q Consensus 1917 t~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~-~l-~~pE~VPFRLT~nmv~~mG~--~G~e---- 1988 (2096)
++|+|+|||+||||||||||++|||||+ ||+++|||||++|++++ .+ ..||.||||||+||+++||+ .|+|
T Consensus 921 ~~S~A~ysvv~YiLgigDRH~~NILid~-tG~v~HIDFG~~f~~~~~~~~~~~E~vPFrLT~~mv~vmg~G~~~~e~s~~ 999 (1091)
T 3hhm_A 921 TRSCAGYCVATFILGIGDRHNSNIMVKD-DGQLFHIDFGHFLDHKKKKFGYKRERVPFVLTQDFLIVISKGAQECTKTRE 999 (1091)
T ss_dssp HHHHHHHHHHHHHHTCCCCCTTTEEEET-TSCEEECCCCCCSCC------------CCCCCHHHHHHSSCSSSCCSSSHH
T ss_pred HHHhhhhhheEEEEeecCCCCcceEEeC-CCCEEEEeehhhhccCCccCCCCcCCCCceeHHHHHHHHhcCCCCcccchh
Confidence 9999999999999999999999999995 99999999999999864 33 46999999999999999964 4444
Q ss_pred -chHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccccccCCCCccccchhHHHHHHHHHHHhhccccccCCCCCCCCC
Q 000134 1989 -GTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSSGVEVENPHAQRAISNIEARLQGSVVGVGAAPSLPLA 2067 (2096)
Q Consensus 1989 -G~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~~~~~~~~~~~n~~a~~~l~~i~~kL~g~~~~~~~~~~~~ls 2067 (2096)
|.|+.+|+.++.+||+|.+.|++++++|+++|+.+|... ..+..+++|+.--.. .-.
T Consensus 1000 fg~Fr~~c~~a~~~LR~~~~~il~LlelM~~s~lp~~~~~--------------~~i~~lr~rf~l~ls--------eee 1057 (1091)
T 3hhm_A 1000 FERFQEMCYKAYLAIRQHANLFINLFSMMLGSGMPELQSF--------------DDIAYIRKTLALDKT--------EQE 1057 (1091)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHHHHHGGGSCCTTCSSH--------------HHHHHHHHHSCCSSC--------HHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCccCch--------------HHHHHHHHHhCCCCC--------HHH
Confidence 999999999999999999999999999999999999641 346677888752211 012
Q ss_pred HHHHHHHHHHHHhC
Q 000134 2068 VEGQARRLIAEAVS 2081 (2096)
Q Consensus 2068 v~~qV~~LI~~Atd 2081 (2096)
...++..+|.+|.+
T Consensus 1058 A~~~f~~~i~~s~~ 1071 (1091)
T 3hhm_A 1058 ALEYFMKQMNDARH 1071 (1091)
T ss_dssp HHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHh
Confidence 34567788988874
No 7
>1w1n_A Phosphatidylinositol 3-kinase TOR1; target of rapamycin, Ser/Thr kinase, redox-regulation, disulfide bond, transferase; NMR {Saccharomyces cerevisiae} PDB: 2kio_A 2kit_A
Probab=99.34 E-value=2e-13 Score=107.38 Aligned_cols=32 Identities=38% Similarity=0.646 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHHHhCcchhhhcCCcccCCC
Q 000134 2065 PLAVEGQARRLIAEAVSHKNLGKMYIWWMPWF 2096 (2096)
Q Consensus 2065 ~lsv~~qV~~LI~~Atd~~nL~~My~gW~Pwl 2096 (2096)
++||++||++||++|||++|||+||+||+|||
T Consensus 2 ~lsv~~QV~~LI~~At~~~NL~~my~GW~p~w 33 (33)
T 1w1n_A 2 ELDVPEQVDKLIQQATSIERLCQHYIGWCPFW 33 (33)
T ss_dssp CSCSTHHHHHHHHHHHHHHHHHTTSCSCCTTC
T ss_pred CCCHHHHHHHHHHHhcCHHHHHHHhhhcccCC
Confidence 68999999999999999999999999999997
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.02 E-value=4.5e-06 Score=114.51 Aligned_cols=668 Identities=15% Similarity=0.149 Sum_probs=367.5
Q ss_pred hcccchhhhhhhhhhchhhhhhhcCccchHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCccccccccccccccccc
Q 000134 12 ALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDKNACKLLL 91 (2096)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (2096)
+|.|+...||..++..+-.|+-..+|.....+...|..........+++.-...||.+.--++.. .+... +
T Consensus 98 ~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~---~~~~~----~-- 168 (852)
T 4fdd_A 98 NIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI---LDSDV----L-- 168 (852)
T ss_dssp TTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTH---HHHCS----S--
T ss_pred HHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHH---hchhh----h--
Confidence 47888999999999999999887777666666666666666666677776655555554333211 00000 0
Q ss_pred ccccccccccHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhcccCccchhhHHHHH
Q 000134 92 NVEDDILSQTVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCVRV 171 (2096)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~ 171 (2096)
+.....-+..+++++.-+.-+.+...-.-. ..++... .. ...-.+..+-+.+++++- ..+++|+.+++.+
T Consensus 169 ---~~~~~~il~~l~~~l~~~~~~vR~~A~~aL-~~~~~~~---~~--~~~~~~~~~l~~l~~~~~-d~~~~vr~~a~~~ 238 (852)
T 4fdd_A 169 ---DRPLNIMIPKFLQFFKHSSPKIRSHAVACV-NQFIISR---TQ--ALMLHIDSFIENLFALAG-DEEPEVRKNVCRA 238 (852)
T ss_dssp ---SSCHHHHHHHHTTTTTCSSHHHHHHHHHHH-HTTTTTT---CH--HHHTSHHHHHHHHHHHHT-CCCHHHHHHHHHH
T ss_pred ---cchHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHHHhcc---cH--HHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 000111122233333211100000000000 0011000 00 011123344455666554 4577899999999
Q ss_pred HHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHHHHHHHHHh--
Q 000134 172 IRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAF-- 249 (2096)
Q Consensus 172 l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 249 (2096)
|.++..+.... +..-....+..+-.++.|++..||..++..+..+.+.......+. .....++..+...+
T Consensus 239 L~~l~~~~~~~-~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~-------~~~~~l~p~ll~~l~~ 310 (852)
T 4fdd_A 239 LVMLLEVRMDR-LLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLV-------RHLPKLIPVLVNGMKY 310 (852)
T ss_dssp HHHHHHHCHHH-HGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHT-------TTHHHHHHHHHHHTSC
T ss_pred HHHHHHhCHHH-HHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHH-------HHHHHHHHHHHHHcCC
Confidence 99999876532 212122333333345589999999999988887664332111111 01112222222222
Q ss_pred ---------hh-----c-----CChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhh
Q 000134 250 ---------TA-----A-----DDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCF 310 (2096)
Q Consensus 250 ---------~~-----~-----~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~ 310 (2096)
.+ . .+..+......+++.+.... +.+++...+=.|.+.|.+++.-+|..|..-+-.++.
T Consensus 311 ~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~--~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~ 388 (852)
T 4fdd_A 311 SDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVY--RDELLPHILPLLKELLFHHEWVVKESGILVLGAIAE 388 (852)
T ss_dssp CHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHH--GGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTT
T ss_pred cHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 11 0 23357778888888885433 567777677778889999999999999999999987
Q ss_pred hhcccccccccchhhhhhhhhhHHHHHHhcCchHHHHHHHHHHhCCChHHHH-----Hhhcccccchhhhcc-ccChh--
Q 000134 311 FHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELV-----KKMIPAVLPKLVVSQ-QDNDQ-- 382 (2096)
Q Consensus 311 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~rp~~~~~~~e~llg~~~~~fL-----~~~~~~~LP~LVl~~-~~~~~-- 382 (2096)
.... .+.++. +.+.+.+...+......++.-|...+|- ..+.+ ......++|.|+-.- ..+..
T Consensus 389 ~~~~----~~~~~l----~~~l~~l~~~l~d~~~~Vr~~a~~~l~~-l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr 459 (852)
T 4fdd_A 389 GCMQ----GMIPYL----PELIPHLIQCLSDKKALVRSITCWTLSR-YAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQ 459 (852)
T ss_dssp TTHH----HHGGGH----HHHHHHHHHHTTCSSHHHHHHHHHHHHH-THHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHH
T ss_pred cchH----HHHHHH----HHHHHHHHHHcCCCCHHHHHHHHHHHHH-HHHHhccchHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 6533 122222 4556777777765444455533334441 11211 112234556665421 11222
Q ss_pred --HHHHHHHHHHHcCCCchhHHhhhHHHHHHHHh---ccccHH---HHHHHHHHHhhhcCC--ChHHHHHHhhHHHHHHH
Q 000134 383 --AVNIINELAKCLNTDMVPLIVTWIPKVLAFAL---HQADER---RLLSALEFYCIQTGS--DNQEIFAAALPALLDEL 452 (2096)
Q Consensus 383 --~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll---~~~~~~---~~~~~l~~~~~~~~~--~~~~~~~~~~~~~l~eL 452 (2096)
+...|..+++..+....+ +++.|+..|+ .+.... .+.+++..+....+. ...+.+...+|.++.-+
T Consensus 460 ~~a~~aL~~l~~~~~~~l~~----~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~ 535 (852)
T 4fdd_A 460 EAACSAFATLEEEACTELVP----YLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKW 535 (852)
T ss_dssp HHHHHHHHHHHHHHGGGGGG----GHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHhhHh----HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHH
Confidence 335666777666654444 4555555444 222222 245666655433332 22345555566666432
Q ss_pred HHhhcCCCchhHhhhhcchhHHHHHHhhhccCCCChhhhhHHHHHHHHHHhhhhh------------cCCCChHHHHHHH
Q 000134 453 ICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKM------------LHAEDLSLQKQAL 520 (2096)
Q Consensus 453 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l------------~~~~~~~~k~~~l 520 (2096)
-.+.+.+.+- + .+.+++..+++.+. ..+..|+.+=+-.++..+...+ ...++...+..++
T Consensus 536 -~~l~d~~~~~---~--~~~~~l~~i~~~~g--~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l 607 (852)
T 4fdd_A 536 -NMLKDEDKDL---F--PLLECLSSVATALQ--SGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVAL 607 (852)
T ss_dssp -HHSCTTCTTH---H--HHHHHHHHHHHHHG--GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHH
T ss_pred -HhcccccHHH---H--HHHHHHHHHHHHHh--HhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHH
Confidence 2333332211 1 24455555554432 2344555553333444444332 1123455677889
Q ss_pred HHHHHHHHHhccccccch--hhHHHHHHHHhcC--CCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhccccCC
Q 000134 521 KRIEILIEMIGSHLTTYV--PKILVLLMHAINK--ESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDK 596 (2096)
Q Consensus 521 ~sl~~li~l~g~~v~~~~--pqI~a~L~~aL~~--~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~ 596 (2096)
..|+.+++-+|+++..+. ++++..|...++. ++++..++.+|..+...+. ..+.+++..++..++..++..
T Consensus 608 ~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~----~~~~~~l~~~lp~l~~~l~~~- 682 (852)
T 4fdd_A 608 DLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACF----QHVKPCIADFMPILGTNLNPE- 682 (852)
T ss_dssp HHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG----GGTGGGHHHHHHHHHHTCCTT-
T ss_pred HHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHcCcc-
Confidence 999999999999988886 8899988888864 5789999999999998753 578999999888888887421
Q ss_pred CCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCChhhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCC--ChhHHHH
Q 000134 597 DNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHE--NLNVRYM 674 (2096)
Q Consensus 597 ~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~~l~~e--n~~Vr~~ 674 (2096)
.+ ..++.|...+..+...-.+.+ -|.++ .-+..+++.+++. +..|+..
T Consensus 683 -~~-~v~~~a~~alg~i~~~~~~~~---------~p~~~-------------------~il~~L~~~l~~~~~~~~~~~~ 732 (852)
T 4fdd_A 683 -FI-SVCNNATWAIGEISIQMGIEM---------QPYIP-------------------MVLHQLVEIINRPNTPKTLLEN 732 (852)
T ss_dssp -SH-HHHHHHHHHHHHHHHHHGGGG---------GGGTH-------------------HHHHHHHHHHTCSSCCHHHHHH
T ss_pred -ch-HHHHHHHHHHHHHHHHhhHhH---------HHHHH-------------------HHHHHHHHHhCCCCCCchHHHH
Confidence 22 345666666666653322111 12221 1122223333322 3467777
Q ss_pred HHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhcccCccCccccccccccc
Q 000134 675 VVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALGAVDPAKVKGFSCQR 754 (2096)
Q Consensus 675 aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IGalDp~r~~~~~~~~ 754 (2096)
+..-+.++...+.+.+. |-+++++..+++.-.+.. +.+-+..+.++|+.|=..-|+.+.
T Consensus 733 a~~~igrl~~~~~~~~~-----------~~l~~~~~~~~~~l~~~~----d~~e~~~a~~~l~~li~~~p~~~~------ 791 (852)
T 4fdd_A 733 TAITIGRLGYVCPQEVA-----------PMLQQFIRPWCTSLRNIR----DNEEKDSAFRGICTMISVNPSGVI------ 791 (852)
T ss_dssp HHHHHHHHHHHCHHHHG-----------GGHHHHHHHHHHHHHTSC----SSHHHHHHHHHHHHHHHHCGGGTG------
T ss_pred HHHHHHHHHHhCHHHhC-----------ccHHHHHHHHHHHhcccc----ccHHHHHHHHHHHHHHHhChHhHH------
Confidence 77777777766655332 346667777666554321 235678888888887666665332
Q ss_pred ccccccChhhHHHHHHHHHHHHHHcCCChhhHhHHHHHHHHHHHHc
Q 000134 755 FKIECSDDDLIFELIDKHLARAFRAAPDTIIQDSAALAIQELLKIA 800 (2096)
Q Consensus 755 ~~~~~~~~~f~~~ll~~~Lv~af~s~~dt~~Q~~~A~AiQElLk~~ 800 (2096)
.+|++ ++.|.-+-.+++.+ +.=+++.+|..+
T Consensus 792 -------~~~~~------~~~~~~~~~~~~~~--l~~~~~~~l~~~ 822 (852)
T 4fdd_A 792 -------QDFIF------FCDAVASWINPKDD--LRDMFCKILHGF 822 (852)
T ss_dssp -------GGHHH------HHHHHHTCSSCCHH--HHHHHHHHHHHH
T ss_pred -------HHHHH------HHHHHHhcCCCCHH--HHHHHHHHHHHH
Confidence 23442 34566666666443 444888888753
No 9
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.99 E-value=7.6e-06 Score=111.70 Aligned_cols=594 Identities=12% Similarity=0.095 Sum_probs=304.0
Q ss_pred hhhHHHHHHHhhccc-CccchhhHHHHHHHHHHccCCchhhhhh-hhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhh--
Q 000134 145 FSFLLNIYFEFLYDE-SSEEVQLSCVRVIRRILVHGTRDVLLKT-RSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQD-- 220 (2096)
Q Consensus 145 ~~~~~~~~~~~l~~~-~~~~v~~~~~~~l~~il~h~~~~~~~~~-~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~-- 220 (2096)
+..+-+.+...|-++ .+.+|+.+.+.+|..++.....+..... +...+..|..++.+++..+|.+++..+..+++.
T Consensus 177 ~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~ 256 (861)
T 2bpt_A 177 SNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYY 256 (861)
T ss_dssp HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 344556666777664 4788999999998887765432211000 011223334445788888888888877766521
Q ss_pred ---------hhhhhhcc---CcccccchhhHHHHH------------------------------------HHHHHhhhc
Q 000134 221 ---------TVLSSLFL---DENASSRSNELKLLD------------------------------------VIKLAFTAA 252 (2096)
Q Consensus 221 ---------~~~~~~~~---~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~ 252 (2096)
.++..+.. +.+...+..-..|+. .+...+...
T Consensus 257 ~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~ 336 (861)
T 2bpt_A 257 TFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQ 336 (861)
T ss_dssp GGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 22221111 111111111111221 111222211
Q ss_pred ------CChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccchhhh
Q 000134 253 ------DDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVL 326 (2096)
Q Consensus 253 ------~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~ 326 (2096)
+++.+..+...+++.+.... +.+++...+=.+.+.|.+++.-+|-.|..-+-.++..... +.+.++.
T Consensus 337 ~~d~~d~~~~~r~~a~~~L~~l~~~~--~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~---~~~~~~l-- 409 (861)
T 2bpt_A 337 NEDPEDDDWNVSMSAGACLQLFAQNC--GNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDK---VQRTYYV-- 409 (861)
T ss_dssp CCC-CCCCCHHHHHHHHHHHHHHHHH--GGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCH---HHHHHHH--
T ss_pred ccccccccCcHHHHHHHHHHHHHHHc--cHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCH---HHHHHHH--
Confidence 22456666666676664333 4556655555677778888888888888888888643321 1112222
Q ss_pred hhhhhhHHHHHHhcCchHHHHHHHHHHhCCChHHHHH------hhcccccchhhhccccChh----HHHHHHHHHHHcCC
Q 000134 327 ICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVK------KMIPAVLPKLVVSQQDNDQ----AVNIINELAKCLNT 396 (2096)
Q Consensus 327 ~~~~l~~~~~~~l~~rp~~~~~~~e~llg~~~~~fL~------~~~~~~LP~LVl~~~~~~~----~~~~i~~ia~~~~~ 396 (2096)
+.+.+.+...+......++.-|...+| ...+++. ...+.++|.|+-.-+.+.. +...+..+++..+.
T Consensus 410 --~~il~~l~~~l~d~~~~vr~~a~~~l~-~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~v~~~a~~al~~l~~~~~~ 486 (861)
T 2bpt_A 410 --HQALPSILNLMNDQSLQVKETTAWCIG-RIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAE 486 (861)
T ss_dssp --HHHHHHHHHGGGCSCHHHHHHHHHHHH-HHHHHHGGGSCTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSS
T ss_pred --HHHHHHHHHHcCCCcHHHHHHHHHHHH-HHHHHhhhhcCCHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhccc
Confidence 344555665554322223332211222 0111110 1122334444432111211 22456666665542
Q ss_pred CchhHHhhhHHHHHHHHhc----ccc----HHHHHHHHHHHhhhcCCChHHHHHHhhHHHHHHHHHhhcC-----CCc--
Q 000134 397 DMVPLIVTWIPKVLAFALH----QAD----ERRLLSALEFYCIQTGSDNQEIFAAALPALLDELICFVDG-----GDS-- 461 (2096)
Q Consensus 397 ~~~~l~~~~~~~Ila~ll~----~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~eLl~~~~~-----~~~-- 461 (2096)
.....+..+++.|+..|+. .+. +..+.++|..+....+.+....+...+|.++.-|.-.+.. .+.
T Consensus 487 ~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~ 566 (861)
T 2bpt_A 487 ATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDA 566 (861)
T ss_dssp SSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhH
Confidence 1112233455555554442 121 3456777777776666555556666666666544322111 111
Q ss_pred hhHhhhhcchhHHHHHHhhhccCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhccccccchhhH
Q 000134 462 DEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKI 541 (2096)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI 541 (2096)
++.......+..++..+.+.+. ..+..|+.+-+-.++..++..- .+ ..+..++.+++.+++.+|.++..+.|+|
T Consensus 567 ~~~~~~~~~~~~~l~~l~~~~~--~~~~~~~~~l~~~l~~~l~~~~---~~-~v~~~~~~~l~~l~~~~~~~~~~~l~~i 640 (861)
T 2bpt_A 567 QSLQELQSNILTVLAAVIRKSP--SSVEPVADMLMGLFFRLLEKKD---SA-FIEDDVFYAISALAASLGKGFEKYLETF 640 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCG--GGTGGGHHHHHHHHHHHHHSTT---GG-GTHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHccCC---CC-cHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 1111111223444444443332 2344555544444444444211 11 4578899999999999999988899999
Q ss_pred HHHHHHHhc--CCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhccccCCCCchhhHHHHHHHHHHHHHHhHH
Q 000134 542 LVLLMHAIN--KESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRA 619 (2096)
Q Consensus 542 ~a~L~~aL~--~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~ 619 (2096)
+-.|...++ .++.+..++.+-..+++.+. +.+.+++..++..++..+.... .....+..+...+..++...++
T Consensus 641 ~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~----~~~~~~~~~l~~~l~~~l~~~~-~~~~vr~~~~~~l~~l~~~~~~ 715 (861)
T 2bpt_A 641 SPYLLKALNQVDSPVSITAVGFIADISNSLE----EDFRRYSDAMMNVLAQMISNPN-ARRELKPAVLSVFGDIASNIGA 715 (861)
T ss_dssp HHHHHHHHHCTTSHHHHHHHHHHHHHHHHTG----GGGHHHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHhc----hhccchHHHHHHHHHHHhCCcc-ccHhhhHHHHHHHHHHHHHhhh
Confidence 988888885 34567777787777777764 4688889998888888775321 1123567788888777665433
Q ss_pred HHHhhcccCCCCCChhhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCC
Q 000134 620 ILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEAC 699 (2096)
Q Consensus 620 ~L~~~i~~lp~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~~l~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~ 699 (2096)
.+..|+..+ +|. +...++...+.-+ .+ ...+ ...||..++..+..++..-.+. . +..
T Consensus 716 ~~~~~l~~~-----l~~---l~~~~~~~~~~~d-~d-~~~~-------~~~vr~~~l~~~~~i~~~l~~~-~-----~~~ 772 (861)
T 2bpt_A 716 DFIPYLNDI-----MAL---CVAAQNTKPENGT-LE-ALDY-------QIKVLEAVLDAYVGIVAGLHDK-P-----EAL 772 (861)
T ss_dssp GGHHHHHHH-----HHH---HHHHHTCCCSSSS-HH-HHHH-------HHHHHHHHHHHHHHHHHHTTTC-H-----HHH
T ss_pred hHHHHHHHH-----HHH---HHHHHhcCCCCCC-hH-HHHH-------HHHHHHHHHHHHHHHHHHHccC-H-----HHH
Confidence 332222111 111 1111110000000 00 0001 1245666666666555332110 0 001
Q ss_pred CCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhcccCc-c-CcccccccccccccccccChhhHHHHHHHHHHHHH
Q 000134 700 SDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALGA-V-DPAKVKGFSCQRFKIECSDDDLIFELIDKHLARAF 777 (2096)
Q Consensus 700 ~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IGa-l-Dp~r~~~~~~~~~~~~~~~~~f~~~ll~~~Lv~af 777 (2096)
.+.+..++..|..++.+.+. ..+..++..|+.|||.+.. + .+ .+. . .-...|+-. |.+..
T Consensus 773 --~~~~~~i~~~l~~~~~d~~~-~~~~~vr~~a~~~l~~l~~~~~g~-~~~--------~-~~~~~~~~~-----ll~~l 834 (861)
T 2bpt_A 773 --FPYVGTIFQFIAQVAEDPQL-YSEDATSRAAVGLIGDIAAMFPDG-SIK--------Q-FYGQDWVID-----YIKRT 834 (861)
T ss_dssp --GGGHHHHHHHHHHHHHCHHH-HTSHHHHHHHHHHHHHHHHHCTTS-TTG--------G-GTTCHHHHH-----HHHHH
T ss_pred --HHHHHHHHHHHHHHHcCccc-CCcHHHHHHHHHHHHHHHHHcCCc-hHH--------H-HHhcHHHHH-----HHHHH
Confidence 14677888888777765310 0025899999999998843 3 22 111 0 111133332 44555
Q ss_pred Hc--CCChhhHhHHHHHHHHHHHHc
Q 000134 778 RA--APDTIIQDSAALAIQELLKIA 800 (2096)
Q Consensus 778 ~s--~~dt~~Q~~~A~AiQElLk~~ 800 (2096)
.. ..+.+..+.+++|+.++=+..
T Consensus 835 ~~~~~~~~~~~~~~~wa~~~~~~~~ 859 (861)
T 2bpt_A 835 RSGQLFSQATKDTARWAREQQKRQL 859 (861)
T ss_dssp HHCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCCHHHHHHHHHHHHHHHHHh
Confidence 53 567788999999999886543
No 10
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.97 E-value=2.9e-06 Score=121.06 Aligned_cols=523 Identities=13% Similarity=0.166 Sum_probs=279.8
Q ss_pred hcccchhhhhhhhhhchhhhhhhcCccchHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCccccccccccccccccc
Q 000134 12 ALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDKNACKLLL 91 (2096)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (2096)
+|.|...+||..|+..+--++-.-++..+..+...|...-.+....|+......||.++-..|.... + +
T Consensus 56 ~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~--~-----~---- 124 (1230)
T 1u6g_C 56 LLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS--G-----S---- 124 (1230)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC------------C----
T ss_pred HhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccc--c-----c----
Confidence 4679999999999999988887666666677777776666677778888877777766544332200 0 0
Q ss_pred ccccccccccHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhcccCccchhhHHHHH
Q 000134 92 NVEDDILSQTVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCVRV 171 (2096)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~ 171 (2096)
.+.. .-..++-+.+++.+-+..+.+++-+++.+
T Consensus 125 -------------------------~~~~----------------------~~~~~llp~L~~~l~~~~~~~~~~~al~~ 157 (1230)
T 1u6g_C 125 -------------------------ALAA----------------------NVCKKITGRLTSAIAKQEDVSVQLEALDI 157 (1230)
T ss_dssp -------------------------CTHH----------------------HHHHHHHHHHHHHHSCCSCHHHHHHHHHH
T ss_pred -------------------------chHH----------------------HHHHHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 0000 00123445566666544567899999999
Q ss_pred HHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHHHHHHHHHhhh
Q 000134 172 IRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTA 251 (2096)
Q Consensus 172 l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (2096)
|..++......+. .-....+.++-..+.|++..||.++++.+..+.+.. . ...-..++..+...+..
T Consensus 158 l~~~~~~~~~~l~-~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~------~------~~~~~~~l~~l~~~L~~ 224 (1230)
T 1u6g_C 158 MADMLSRQGGLLV-NFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSC------G------NIVFVDLIEHLLSELSK 224 (1230)
T ss_dssp HHHHHHHTCSSCT-TTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----------------CTTHHHHHHHHHHH
T ss_pred HHHHHHHhHhHHH-HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhc------C------HHHHHHHHHHHHHHhcc
Confidence 9999976543321 122445566666679999999999999999976211 0 00112345555555555
Q ss_pred cCChhHHHHHHHHHHHHHhhhccc-chhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccchhhhhhhh
Q 000134 252 ADDPLILETLLESTAELMMAVDVH-SQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNE 330 (2096)
Q Consensus 252 ~~d~~i~eTll~~~~~i~~~~~~~-~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~~~ 330 (2096)
.+++.+..+.+.+++.|+.++... ...+.-.+=.++..+...++-+|..|..-+..+++..... +.++. +.
T Consensus 225 ~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~l----~~ 296 (1230)
T 1u6g_C 225 NDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKE----VYPHV----ST 296 (1230)
T ss_dssp TCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC----CHHHH----HH
T ss_pred CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHH----HHHhH----HH
Confidence 555567777888889886643110 0111223344666777888999999999999888865332 11111 11
Q ss_pred hhHHHHHHhcCchH------------------------------------------HHHHHHHHHhCC------------
Q 000134 331 LFDYLSVRLASRPI------------------------------------------MVREFAEAAFGV------------ 356 (2096)
Q Consensus 331 l~~~~~~~l~~rp~------------------------------------------~~~~~~e~llg~------------ 356 (2096)
+.+.+.+.+...|. .+..+.. +...
T Consensus 297 li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~-l~~~~~~~~~~~~~~l 375 (1230)
T 1u6g_C 297 IINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDA-VVSTRHEMLPEFYKTV 375 (1230)
T ss_dssp HHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHH-HHTTCCTTHHHHHTTT
T ss_pred HHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHH-HHHhchhHHHHHHHHH
Confidence 11111111111110 0000100 1110
Q ss_pred -----------------------------------------------ChHHHHHhhcccccchhhhc-cccChh----HH
Q 000134 357 -----------------------------------------------ETEELVKKMIPAVLPKLVVS-QQDNDQ----AV 384 (2096)
Q Consensus 357 -----------------------------------------------~~~~fL~~~~~~~LP~LVl~-~~~~~~----~~ 384 (2096)
+..+.+....+.++|.+.-. +..+.. +.
T Consensus 376 ~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~ 455 (1230)
T 1u6g_C 376 SPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCF 455 (1230)
T ss_dssp HHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHH
Confidence 01122222223333322210 111111 12
Q ss_pred HHHHHHHHHcCCCchhHHhhhHHHHHHHHhcccc-HHHHHHHHHHHhhh---cCCC-hHHHHHHhhHHHHHHHHHhhcCC
Q 000134 385 NIINELAKCLNTDMVPLIVTWIPKVLAFALHQAD-ERRLLSALEFYCIQ---TGSD-NQEIFAAALPALLDELICFVDGG 459 (2096)
Q Consensus 385 ~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~~~-~~~~~~~l~~~~~~---~~~~-~~~~~~~~~~~~l~eLl~~~~~~ 459 (2096)
..+.++++.....+.+.+..-++.|+..|--... .+....++..+... .+.+ ....+...+|.++. .+.+.
T Consensus 456 ~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~----~l~d~ 531 (1230)
T 1u6g_C 456 NMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVA----CVGDP 531 (1230)
T ss_dssp HHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHH----HHTCS
T ss_pred HHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHH----HHccc
Confidence 3344444443322322222222222222211111 12222233322222 1111 22233333344332 23332
Q ss_pred CchhHhhhhcchhHHHHHHhhhccC-----CCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhcccc
Q 000134 460 DSDEINERLNRVPRVIRKVSTVLTG-----NEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHL 534 (2096)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~~v 534 (2096)
+... + ..+..++..+.+.+.. +..+..|+..=+=.++..+.. ...+...|..++.++|.|++.+|+.+
T Consensus 532 ~~~v---~-~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~---~d~~~~vr~~a~~~lg~L~~~~g~~~ 604 (1230)
T 1u6g_C 532 FYKI---T-SEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKA---ADIDQEVKERAISCMGQIICNLGDNL 604 (1230)
T ss_dssp SHHH---H-HHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSC---SSSCHHHHHHHHHHHHHHHHHTGGGC
T ss_pred chHH---H-HHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHHHHHhCchh
Confidence 2110 0 1122334443433322 234555554333333344421 22345678889999999999999999
Q ss_pred ccchhhHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhccccCCCCchhhHHHHHHHHHHHH
Q 000134 535 TTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDLV 614 (2096)
Q Consensus 535 ~~~~pqI~a~L~~aL~~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li 614 (2096)
....|+++..|...+..+.-+..++++........ .+.++.+++..++..+...+... ....+..+...+..++
T Consensus 605 ~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~---~~~~~~~~~~~i~~~L~~~l~~~---~~~~r~~a~~al~~l~ 678 (1230)
T 1u6g_C 605 GSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSP---LKIDLRPVLGEGVPILASFLRKN---QRALKLGTLSALDILI 678 (1230)
T ss_dssp CTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCS---SCCCCHHHHHHHHHHHHHHTTSC---CHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCc---cccchHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHH
Confidence 99999999999999988777777777777665532 23467888999999888877632 2346778888888888
Q ss_pred HHhH-----HHHHhhcccCCCC
Q 000134 615 LKNR-----AILKQHIHEFPLL 631 (2096)
Q Consensus 615 ~~n~-----~~L~~~i~~lp~L 631 (2096)
..+. +.+...+..+.++
T Consensus 679 ~~~~~~~~~~~v~~~l~~ll~l 700 (1230)
T 1u6g_C 679 KNYSDSLTAAMIDAVLDELPPL 700 (1230)
T ss_dssp HHCCTTCCHHHHHHHHTTCGGG
T ss_pred hcccccCCHHHHHHHHHHHHhh
Confidence 7763 4455555555444
No 11
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.77 E-value=3.3e-06 Score=115.82 Aligned_cols=544 Identities=12% Similarity=0.161 Sum_probs=296.9
Q ss_pred hhcccchhhhhhhhhhchhhhhhhcCcc---chHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCcccccccc-cccc
Q 000134 11 LALRDEFDEVRAEAVISLPVIVMWSGLG---VLTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDW-DKNA 86 (2096)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 86 (2096)
-+++|+..+||..|+-.+--++-..+.. .+..+.+.|-.+..++...|++.....||.++=.++.. ..+ -.+-
T Consensus 181 ~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~---~~~~l~~l 257 (852)
T 4fdd_A 181 QFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDR---LLPHMHNI 257 (852)
T ss_dssp TTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHH---HGGGHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHH---HHHHHHHH
Confidence 4678899999999998886555432211 12344455555566777889998888888776544311 000 0111
Q ss_pred cccccccccccccccHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhc---------
Q 000134 87 CKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLY--------- 157 (2096)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--------- 157 (2096)
...+++.... ....+...--.||...|+.....+ . ..--...+-+.+++.+.
T Consensus 258 ~~~l~~~~~~-~~~~vr~~a~e~l~~l~~~~~~~~------~------------~~~~~~~l~p~ll~~l~~~e~d~~~~ 318 (852)
T 4fdd_A 258 VEYMLQRTQD-QDENVALEACEFWLTLAEQPICKD------V------------LVRHLPKLIPVLVNGMKYSDIDIILL 318 (852)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHHHHTTSTTHHH------H------------HTTTHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHccC-CcHHHHHHHHHHHHHHhcchhHHH------H------------HHHHHHHHHHHHHHHcCCcHhHHHHh
Confidence 2222222111 112233333445666665432111 0 01123344455555552
Q ss_pred -cc-----------CccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhh
Q 000134 158 -DE-----------SSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSS 225 (2096)
Q Consensus 158 -~~-----------~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~ 225 (2096)
++ .+..|+.+....|.++..+...++. . ..+..+..++.|++-.+|++++.++..+.+...
T Consensus 319 ~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~-~---~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~--- 391 (852)
T 4fdd_A 319 KGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELL-P---HILPLLKELLFHHEWVVKESGILVLGAIAEGCM--- 391 (852)
T ss_dssp HC------------CCCCHHHHHHHHHHHHHHHHGGGGH-H---HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTH---
T ss_pred cCCcccccccccccccchHHHHHHHHHHHHHHhccHHHH-H---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcch---
Confidence 11 3446788888888888877654432 2 244455556689999999999999999762111
Q ss_pred hccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhc--ccchhHHHHHHHHHHhhCCCCcchHHHHHH
Q 000134 226 LFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVD--VHSQHFLFLLILLVEQLDNPHVTVRMNASR 303 (2096)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~--~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~ 303 (2096)
.........++..+...+.+ .++.|..+...++|+++.... .....+.-.+-.|+..|..+++-||..|..
T Consensus 392 ------~~~~~~l~~~l~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~ 464 (852)
T 4fdd_A 392 ------QGMIPYLPELIPHLIQCLSD-KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACS 464 (852)
T ss_dssp ------HHHGGGHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 11111224566666665543 568899999999999865331 123445555666889998899999999999
Q ss_pred HHHHHhhhhcccccccccchhhhhhhhhhHHHHHHhcC--chHH------HHHHHHHHhCCC--hHHHHHhhcccccchh
Q 000134 304 LIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLAS--RPIM------VREFAEAAFGVE--TEELVKKMIPAVLPKL 373 (2096)
Q Consensus 304 ~i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~--rp~~------~~~~~e~llg~~--~~~fL~~~~~~~LP~L 373 (2096)
-|.++|+..... +.++...+ .+.+.+-+.. +... +..+++ ..|-. ..+++. .++|.|
T Consensus 465 aL~~l~~~~~~~----l~~~l~~l----l~~L~~~l~~~~~~~~~~~~~ai~~l~~-~~~~~~~~~~~~~----~l~p~l 531 (852)
T 4fdd_A 465 AFATLEEEACTE----LVPYLAYI----LDTLVFAFSKYQHKNLLILYDAIGTLAD-SVGHHLNKPEYIQ----MLMPPL 531 (852)
T ss_dssp HHHHHHHHHGGG----GGGGHHHH----HHHHHHHHHHCCHHHHHHHHHHHHHHHH-HHGGGGCCHHHHH----HHHHHH
T ss_pred HHHHHHHHhhHh----hHhHHHHH----HHHHHHHHHHhChHHHHHHHHHHHHHHH-HhhhhhccHHHHH----HHHHHH
Confidence 999999876432 33444333 3333333321 1111 222222 22211 133444 345555
Q ss_pred hh----ccccChh---HHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhcc----------------ccHHHHHH---HHH
Q 000134 374 VV----SQQDNDQ---AVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQ----------------ADERRLLS---ALE 427 (2096)
Q Consensus 374 Vl----~~~~~~~---~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~----------------~~~~~~~~---~l~ 427 (2096)
+- .+..+.. +.+.+..|++.++....+.+..-++.++..+-.. ++++.... .+.
T Consensus 532 ~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~ 611 (852)
T 4fdd_A 532 IQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLS 611 (852)
T ss_dssp HHHHHHSCTTCTTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHH
Confidence 51 1111111 3466677888887766555444444433332110 12232222 222
Q ss_pred HHhhhcCCChHHHHHHhhHHHHHHHHHhhcCCCchhHhhhhcchhHHHHHHhhhccCCCChhhhhHHHHHHHHHHhhhhh
Q 000134 428 FYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKM 507 (2096)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~l~eLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l 507 (2096)
-+....+.+....+.+ +.++.-++-.+.+...+. |. .+...+..+++.. ...+..|+. .++..+...+
T Consensus 612 ~l~~~l~~~~~~~~~~--~~~~~~l~~~l~~~~~~v---r~-~a~~~l~~l~~~~--~~~~~~~l~----~~lp~l~~~l 679 (852)
T 4fdd_A 612 GLAEGLGGNIEQLVAR--SNILTLMYQCMQDKMPEV---RQ-SSFALLGDLTKAC--FQHVKPCIA----DFMPILGTNL 679 (852)
T ss_dssp HHHHHHGGGGHHHHHT--CCHHHHHHHHTTCSSHHH---HH-HHHHHHHHHHHHC--GGGTGGGHH----HHHHHHHHTC
T ss_pred HHHHHHhHhHHHHhcC--CcHHHHHHHHhCCCChhH---HH-HHHHHHHHHHHHh--hHHHHHHHH----HHHHHHHHHc
Confidence 2333333333333310 122221222233322221 11 1222333333221 223444443 3444444333
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHhcCCCcchhhhH-HHHHHHHHhccCCCcchhhHHHHHHH
Q 000134 508 LHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLS-VLHFFIEQLSRVSPSSTKHVISQVFA 586 (2096)
Q Consensus 508 ~~~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL~~~~L~~~~l~-~W~~fv~~L~~~~~~~l~~ll~~i~~ 586 (2096)
+.++.+.++.++.++|++.+.+|..+.++.+.|+..|..-|+.++.+..... ++..+- .|...+|+.+.|++++++.
T Consensus 680 -~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~ig-rl~~~~~~~~~~~l~~~~~ 757 (852)
T 4fdd_A 680 -NPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIG-RLGYVCPQEVAPMLQQFIR 757 (852)
T ss_dssp -CTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHH-HHHHHCHHHHGGGHHHHHH
T ss_pred -CccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHH-HHHHhCHHHhCccHHHHHH
Confidence 3445678889999999999999999999999999999998887766544443 333333 3333467788899999888
Q ss_pred HhhhccccCCCCchhhHHHHHHHHHHHHHHhHH
Q 000134 587 ALIPFLERDKDNPSVLLNKVVKILEDLVLKNRA 619 (2096)
Q Consensus 587 ~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~ 619 (2096)
.+...+..-.+. ..+..|..-|-.||..|..
T Consensus 758 ~~~~~l~~~~d~--~e~~~a~~~l~~li~~~p~ 788 (852)
T 4fdd_A 758 PWCTSLRNIRDN--EEKDSAFRGICTMISVNPS 788 (852)
T ss_dssp HHHHHHHTSCSS--HHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHhcccccc--HHHHHHHHHHHHHHHhChH
Confidence 876666432222 2367788888888888775
No 12
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.74 E-value=1.6e-05 Score=113.45 Aligned_cols=694 Identities=13% Similarity=0.167 Sum_probs=331.3
Q ss_pred HHHhhhcccchhhhhhhhhhchhhhhhhcCccchHHHHHHH-hhhchhhhhhhhhhccchhhhhhhccCccccccccccc
Q 000134 7 EILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRL-ESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDKN 85 (2096)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (2096)
..+--.|.|+...||..|+.++..++...+...+..+...| ..+.++....+++.....+|.++-..|.. ....-..
T Consensus 178 ~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~--~~~~l~~ 255 (1230)
T 1u6g_C 178 TCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHR--IGEYLEK 255 (1230)
T ss_dssp HHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGG--GTTSCTT
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHH--HHHHHHH
Confidence 34444678888899999999999999888765544422222 23332222356666666666665444421 1111111
Q ss_pred cccccccccccccc---ccHHhhhhcccccccCCccccc-ccccccccC----CCccc---ccc----cc---cCCChhh
Q 000134 86 ACKLLLNVEDDILS---QTVDYLLENFWCSKCDTNVVHN-QELSSKIVN----PSDVQ---SKD----LN---FHSDFSF 147 (2096)
Q Consensus 86 ~~~~~~~~~~~~~~---~~~~~~~~~~~c~~c~~~~~~~-~~~~~~~~~----~~~~~---~~~----~~---~~~~~~~ 147 (2096)
-...++..-+...+ ......+ +++|..|...+... .+.-..++. -+... +.+ .+ .+-+...
T Consensus 256 l~~~ll~~l~d~~~~vR~~a~~~l-~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~ 334 (1230)
T 1u6g_C 256 IIPLVVKFCNVDDDELREYCIQAF-ESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQG 334 (1230)
T ss_dssp HHHHHHHHHSSCCTTTHHHHHHHH-HHHHHCTTCCCHHHHHHHHHHHTTCCCCC--------------------------
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHH-HHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhh
Confidence 22222222111111 1111122 34455565432110 000000000 00000 000 00 0000000
Q ss_pred HHHHHHHhhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhc
Q 000134 148 LLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLF 227 (2096)
Q Consensus 148 ~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~ 227 (2096)
...-| . .-+..+.+|+-+....|..+..... +........-+..+...+.|++..||.++..++..++.......-.
T Consensus 335 ~~~~~-~-~~~d~~~~vR~~A~~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~ 411 (1230)
T 1u6g_C 335 SDDEY-S-DDDDMSWKVRRAAAKCLDAVVSTRH-EMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSW 411 (1230)
T ss_dssp ------------CTTHHHHHHHHHHHHHHTTCC-TTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC---
T ss_pred ccccc-c-cccccCHHHHHHHHHHHHHHHHhch-hHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhcccccc
Confidence 00000 0 0123456788899999999887543 2111111111233333447899999999999998877432110000
Q ss_pred cCcccc-----c-----chhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccc---hhHHHHHHHHHHhhCCCC
Q 000134 228 LDENAS-----S-----RSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHS---QHFLFLLILLVEQLDNPH 294 (2096)
Q Consensus 228 ~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~---e~~~~~l~~Li~~L~~~n 294 (2096)
.++... + ......++..+.+.+. .+++.+++.++..+++++... .+ .-+...+-.++..|..++
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~-~~~~~vr~~~~~~L~~l~~~~--~~~l~~~l~~ll~~l~~~L~d~~ 488 (1230)
T 1u6g_C 412 LCDPDAMEQGETPLTMLQSQVPNIVKALHKQMK-EKSVKTRQCCFNMLTELVNVL--PGALTQHIPVLVPGIIFSLNDKS 488 (1230)
T ss_dssp ---------CCCHHHHHHHHTTHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHS--TTTTGGGHHHHHHHHHHHTTCSS
T ss_pred ccCccccccccchHHHHHHHhhHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHc--hhhhHHHHHHHHHHHHHHHcCCC
Confidence 000000 0 0111223333444343 456779999999999986642 22 233445556788888887
Q ss_pred c--chHHHHHHHHHHHhhhhcccccccccchhhhhhhhhhHHHHHHhcCchH--------HHHHHHHHHhCC-------C
Q 000134 295 V--TVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPI--------MVREFAEAAFGV-------E 357 (2096)
Q Consensus 295 ~--~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~rp~--------~~~~~~e~llg~-------~ 357 (2096)
+ -++..|...+..+++.+.. +.+.++. +.+.+.+.+.+..+.. .+.++++ .+|- .
T Consensus 489 ~~~~v~~~a~~~l~~~~~~~~~---~~~~~~l----~~llp~L~~~l~d~~~~v~~~al~~l~~l~~-~~~~~~~~~~~~ 560 (1230)
T 1u6g_C 489 SSSNLKIDALSCLYVILCNHSP---QVFHPHV----QALVPPVVACVGDPFYKITSEALLVTQQLVK-VIRPLDQPSSFD 560 (1230)
T ss_dssp SCHHHHHHHHHHHHHHHHSSCG---GGGHHHH----TTTHHHHHHHHTCSSHHHHHHHHHHHHHHHH-HHCCSSSCCCCC
T ss_pred CcchHHHHHHHHHHHHHHhCCH---HHHHhHH----HHHHHHHHHHHcccchHHHHHHHHHHHHHHH-HhcCcccccccc
Confidence 5 7888888888888765533 2223333 4455666665554433 2344443 4454 4
Q ss_pred hHHHHHhhcccccchhhhccccChh----HHHHHHHHHHHcCCCchhHHhhhHHHHHHHHh---ccc-cHHHHHHHHHHH
Q 000134 358 TEELVKKMIPAVLPKLVVSQQDNDQ----AVNIINELAKCLNTDMVPLIVTWIPKVLAFAL---HQA-DERRLLSALEFY 429 (2096)
Q Consensus 358 ~~~fL~~~~~~~LP~LVl~~~~~~~----~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll---~~~-~~~~~~~~l~~~ 429 (2096)
...++..+.+..+++|-.. ..+.. +...+..++...+..+.+ .++.++..|. ..+ .+.....++..+
T Consensus 561 ~~~~~~~ll~~ll~~l~~~-d~~~~vr~~a~~~lg~L~~~~g~~~~~----~~~~~l~~L~~~l~~e~~r~~~~~al~~i 635 (1230)
T 1u6g_C 561 ATPYIKDLFTCTIKRLKAA-DIDQEVKERAISCMGQIICNLGDNLGS----DLPNTLQIFLERLKNEITRLTTVKALTLI 635 (1230)
T ss_dssp CHHHHHHHHHHHHHHHSCS-SSCHHHHHHHHHHHHHHHHHTGGGCCT----HHHHHHHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHhCchhhh----hHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 4566666666666665311 12222 235677777777766644 3455554443 222 234455666655
Q ss_pred hhhc-CCChHHHHHHhhHHHHHHHHHhhcCCCchhHhhhhcchhHHHHHHhhhccCCCChhhhhHHHHHHHHHHhhhhhc
Q 000134 430 CIQT-GSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKML 508 (2096)
Q Consensus 430 ~~~~-~~~~~~~~~~~~~~~l~eLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~ 508 (2096)
.... +.+...++...+|.+.. .+...+. .. |. ....++..+..... .... .+++..++..+- .++
T Consensus 636 ~~~~~~~~~~~~~~~i~~~L~~----~l~~~~~--~~-r~-~a~~al~~l~~~~~-~~~~----~~~v~~~l~~ll-~ll 701 (1230)
T 1u6g_C 636 AGSPLKIDLRPVLGEGVPILAS----FLRKNQR--AL-KL-GTLSALDILIKNYS-DSLT----AAMIDAVLDELP-PLI 701 (1230)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHH----HTTSCCH--HH-HH-HHHHHHHHHHHHCC-TTCC----HHHHHHHHTTCG-GGS
T ss_pred HhCccccchHHHHHHHHHHHHH----HHHhCCH--HH-HH-HHHHHHHHHHhccc-ccCC----HHHHHHHHHHHH-hhc
Confidence 4322 23455556655555443 3333322 11 11 23344444443322 1112 234444443321 223
Q ss_pred CCCChHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCC--cchhhHHHHHHH
Q 000134 509 HAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSP--SSTKHVISQVFA 586 (2096)
Q Consensus 509 ~~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL~~~~L~~~~l~~W~~fv~~L~~~~~--~~l~~ll~~i~~ 586 (2096)
+..|..++..++..+..|++..++.+....+.++..+...+..+.++..++.+-..+++.+...++ ..+.+++..+
T Consensus 702 ~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ll~~l-- 779 (1230)
T 1u6g_C 702 SESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRML-- 779 (1230)
T ss_dssp CTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHH--
T ss_pred CcchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcccchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH--
Confidence 446777888899999999987776554445555544444454444555555554445555433222 2344444433
Q ss_pred HhhhccccCCC--CchhhHHHHHHHHHHHHHHhH----HHHHhhcccCCCCCChhhhHHHH-HHHHHh--cCCCC-HHHH
Q 000134 587 ALIPFLERDKD--NPSVLLNKVVKILEDLVLKNR----AILKQHIHEFPLLPSIAALTEVN-KAIQEA--RGPMT-LKDQ 656 (2096)
Q Consensus 587 ~lip~~~~~~~--~~~~~~~~~~~il~~Li~~n~----~~L~~~i~~lp~Lp~ip~l~~v~-~~l~~~--r~~~~-l~~~ 656 (2096)
..-+..... ........+...+..++.... ..+..++..+-.-...+...... ..+.+. +..+. ..+.
T Consensus 780 --~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~l 857 (1230)
T 1u6g_C 780 --TGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLEL 857 (1230)
T ss_dssp --STTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSCCCSCTHH
T ss_pred --hccccCCCCccccchhhHHHHHHHHHHHHhcchhhHHHHHHHHHHhCCCCccHHHHHHHHHHHHHhcccCCCcccccH
Confidence 222211000 011123445566666665432 33444444332100111111111 111221 11121 2345
Q ss_pred HHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHH----H------------------HHHhccCCC-CchhHHHHHHHHH
Q 000134 657 LLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDV----T------------------ALINGEACS-DLDVLSTLISSLL 713 (2096)
Q Consensus 657 l~~~~~~l~~en~~Vr~~aL~eL~~~L~~~~~~l----~------------------~~~~~e~~~-~~~vi~~Lv~sLL 713 (2096)
+..|.+.+++.+..||..|...|..+...+-+.+ . ..+...... -.+.+.++...|+
T Consensus 858 ~~~~~~~l~~~~~~Vr~aAa~aLg~l~~~~~~~~lp~ll~~l~~~~~~~~~~l~al~e~i~~~~~~~~~~~~~~i~~~L~ 937 (1230)
T 1u6g_C 858 KSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLL 937 (1230)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHhHHHhccCHHHHHHHHHHHHhccchhhHHHHHHHHHHHhcCChhhHHhhHHHHHHHHH
Confidence 6778889999999999988777776554442211 1 111111111 1245667777777
Q ss_pred HHhhhhccccchhhHHHHHHHhhcccCccCcc
Q 000134 714 RGCAEESRTVVGQKLKLVCADCLGALGAVDPA 745 (2096)
Q Consensus 714 ~~c~~~~~t~~~~~I~~lca~CLG~IGalDp~ 745 (2096)
+.+.+. ++.++..+|+|||.|...||.
T Consensus 938 ~~~~~~-----~~~~r~~~a~~lg~l~~~~~~ 964 (1230)
T 1u6g_C 938 KHCECA-----EEGTRNVVAECLGKLTLIDPE 964 (1230)
T ss_dssp TCCCCS-----STTHHHHHHHHHHHHHHSSGG
T ss_pred HHhcCc-----chhhHHHHHHHHhhhhccChH
Confidence 665432 246888999999999999883
No 13
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.70 E-value=2.1e-05 Score=96.55 Aligned_cols=372 Identities=12% Similarity=0.093 Sum_probs=213.9
Q ss_pred HHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH--hccCC----hhH
Q 000134 1046 LARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----LQD 1119 (2096)
Q Consensus 1046 LA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~--~~~~s----l~~ 1119 (2096)
+|...++.|.|..|+.+++..++..+. ....+..|..+|.+.++.|...-.... ...+. ...
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~ 72 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPD------------NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSN 72 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHH
Confidence 578889999999999999987765321 124566888999999999988777542 22232 233
Q ss_pred HHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCCh
Q 000134 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRW 1199 (2096)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~W 1199 (2096)
....+...|++++|..+|+++++..|++.+...++-.|+...|+++......+......|+....+. .-..+...+|+|
T Consensus 73 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~l~~~~~~~g~~ 151 (388)
T 1w3b_A 73 LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRS-DLGNLLKALGRL 151 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHH-HHHHHHHTTSCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH-HHHHHHHHccCH
Confidence 5567889999999999999999999999998899999999999999888777766655565433222 223456678999
Q ss_pred hhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHHHHhhh
Q 000134 1200 DLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLHL 1279 (2096)
Q Consensus 1200 d~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~kLH~ 1279 (2096)
+.-.++....-.. .+........+|.++ ...++..+..+..+++.. +.+...+.|...-.......
T Consensus 152 ~~A~~~~~~al~~------~p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~lg~~~~~~~- 217 (388)
T 1w3b_A 152 EEAKACYLKAIET------QPNFAVAWSNLGCVF--NAQGEIWLAIHHFEKAVT-----LDPNFLDAYINLGNVLKEAR- 217 (388)
T ss_dssp HHHHHHHHHHHHH------CTTCHHHHHHHHHHH--HTTTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHh------CCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHh-----cCCCcHHHHHHHHHHHHHcC-
Confidence 8776665443211 011122333455443 334444433333332221 11111111111111111111
Q ss_pred hhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHHHH
Q 000134 1280 LQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLC 1359 (2096)
Q Consensus 1280 L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~AklA 1359 (2096)
+.+++........ . ..+.... .|...-......-+..+-+-.+++++ . ..+.....|...+.+.
T Consensus 218 --~~~~A~~~~~~al--~--~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~al-~---~~p~~~~~~~~l~~~~ 281 (388)
T 1w3b_A 218 --IFDRAVAAYLRAL--S--LSPNHAV------VHGNLACVYYEQGLIDLAIDTYRRAI-E---LQPHFPDAYCNLANAL 281 (388)
T ss_dssp --CTTHHHHHHHHHH--H--HCTTCHH------HHHHHHHHHHHTTCHHHHHHHHHHHH-H---TCSSCHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHH--h--hCcCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHH-h---hCCCCHHHHHHHHHHH
Confidence 1111111110000 0 0000000 01110000000001111122222221 1 1223456788888888
Q ss_pred HHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCc
Q 000134 1360 RLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPV 1437 (2096)
Q Consensus 1360 RKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1437 (2096)
.+.|+++.|...+.++....+ +.+....+.++...|+..+|+..++++++..|
T Consensus 282 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p------------------------- 336 (388)
T 1w3b_A 282 KEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP------------------------- 336 (388)
T ss_dssp HHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT-------------------------
T ss_pred HHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-------------------------
Confidence 888888888888887776643 34566777888888888888888887764211
Q ss_pred ccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhH
Q 000134 1438 LSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCD 1498 (2096)
Q Consensus 1438 ~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d 1498 (2096)
..+.++..+|.-+...|+ .++.++.|+++++++|....+|+.+|..+.
T Consensus 337 -----------~~~~~~~~l~~~~~~~g~--~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~ 384 (388)
T 1w3b_A 337 -----------EFAAAHSNLASVLQQQGK--LQEALMHYKEAIRISPTFADAYSNMGNTLK 384 (388)
T ss_dssp -----------TCHHHHHHHHHHHHTTTC--CHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred -----------CcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCCHHHHHhHHHHHH
Confidence 012345555555544443 677888888888888888888888887553
No 14
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.69 E-value=3.8e-05 Score=104.94 Aligned_cols=472 Identities=12% Similarity=0.088 Sum_probs=257.7
Q ss_pred hhHHHHHHHhhcc------cCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhh
Q 000134 146 SFLLNIYFEFLYD------ESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQ 219 (2096)
Q Consensus 146 ~~~~~~~~~~l~~------~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~ 219 (2096)
.++-+.+++.|.. +.+.+++.++...|..+..+...++ +. ..+..+...+.|++..+|.+++..+..+.+
T Consensus 320 ~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~-~~---~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~ 395 (876)
T 1qgr_A 320 QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI-VP---HVLPFIKEHIKNPDWRYRDAAVMAFGCILE 395 (876)
T ss_dssp HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGG-HH---HHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhh-HH---HHHHHHHHHccCCChHHHHHHHHHHHHHHc
Confidence 3445556666643 2345788888888888877765433 22 233444555689999999999999988651
Q ss_pred hhhhhhhccCcc-cccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcc---cchhHHHHHHHHHHhhCCCCc
Q 000134 220 DTVLSSLFLDEN-ASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDV---HSQHFLFLLILLVEQLDNPHV 295 (2096)
Q Consensus 220 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~---~~e~~~~~l~~Li~~L~~~n~ 295 (2096)
+.. ..-......++..+...+.. .++.|+++.+.++++++..... ..+.+...+-.|+..|.++ +
T Consensus 396 ---------~~~~~~~~~~~~~~l~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~ 464 (876)
T 1qgr_A 396 ---------GPEPSQLKPLVIQAMPTLIELMKD-PSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-P 464 (876)
T ss_dssp ---------SSCHHHHHHHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-H
T ss_pred ---------CCCHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-H
Confidence 110 00001113355555555543 4578999999999999654322 2355666666788888775 8
Q ss_pred chHHHHHHHHHHHhhhhc-------cc---ccccccchhhhhhhhhhHHHHHHhcCc----hH----H---HHHHHHHHh
Q 000134 296 TVRMNASRLIRKSCFFHL-------KG---GCELLVSKAVLICNELFDYLSVRLASR----PI----M---VREFAEAAF 354 (2096)
Q Consensus 296 ~v~~~A~~~i~~l~~~~~-------~~---~~~l~~~~~~~~~~~l~~~~~~~l~~r----p~----~---~~~~~e~ll 354 (2096)
-|+..|..-|..++.... +. ..+.+.++.. .+.+.+.+-+... +. . +..++. ..
T Consensus 465 ~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~----~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~-~~ 539 (876)
T 1qgr_A 465 RVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFE----LIVQKLLETTDRPDGHQNNLRSSAYESLMEIVK-NS 539 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHH----HHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHH-TC
T ss_pred HHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHH----HHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHH-HC
Confidence 899999999988887653 10 1123444543 3344444444321 11 1 222332 34
Q ss_pred CCChHHHHHhhcccccchhhhc--------cccChh--------HHHHHHHHHHHcC-CCchhHHhhhHHHHHHHHh---
Q 000134 355 GVETEELVKKMIPAVLPKLVVS--------QQDNDQ--------AVNIINELAKCLN-TDMVPLIVTWIPKVLAFAL--- 414 (2096)
Q Consensus 355 g~~~~~fL~~~~~~~LP~LVl~--------~~~~~~--------~~~~i~~ia~~~~-~~~~~l~~~~~~~Ila~ll--- 414 (2096)
|-....++....+.++..+-.. ...|.. +...+..+++.++ ..+.+ +++.|+..++
T Consensus 540 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~----~~~~l~~~l~~~l 615 (876)
T 1qgr_A 540 AKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQ----ISDVVMASLLRMF 615 (876)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHT----THHHHHHHHHHHC
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhH----HHHHHHHHHHHHH
Confidence 4444445555444444333221 111100 1234455555444 33433 4444444433
Q ss_pred -ccc----cHHHHHHHHHHHhhhcCCChHHHHHHhhHHHHHHHHHhhcCCCchhHhhhhcchhHHHHHHhhhccCCCChh
Q 000134 415 -HQA----DERRLLSALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLP 489 (2096)
Q Consensus 415 -~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~eLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (2096)
... ..+.+..++..+....+......+...+|.++ ..++..+..+. +. .....+..+.+... +.+
T Consensus 616 ~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~----~~l~~~~~~~v--r~-~a~~~l~~l~~~~~--~~~- 685 (876)
T 1qgr_A 616 QSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLG----IGLKNYAEYQV--CL-AAVGLVGDLCRALQ--SNI- 685 (876)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHH----HHHHHCTTHHH--HH-HHHHHHHHHHHHHG--GGG-
T ss_pred HhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHcCcchHHH--HH-HHHHHHHHHHHHHH--Hhh-
Confidence 221 13445555555544433333222333333332 23333212221 11 12233333333221 223
Q ss_pred hhhHHHHHHHHHHhhhhhcCC-CChHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHhcCC-------------Ccc
Q 000134 490 GFLRNHFVGLLNSIDRKMLHA-EDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKE-------------SLQ 555 (2096)
Q Consensus 490 ~fl~~~~LGil~~~~~~l~~~-~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL~~~-------------~L~ 555 (2096)
.+++-.++..+-..+.+. .+...|..++.++|.+++.+|+....++|.|+-.|..++..+ .++
T Consensus 686 ---~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r 762 (876)
T 1qgr_A 686 ---IPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELR 762 (876)
T ss_dssp ---HHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHH
T ss_pred ---hhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHH
Confidence 344444444443333232 234577889999999999999999899999999999888633 577
Q ss_pred hhhhHHHHHHHHHhccCC------CcchhhHHHHHHHHhhhccccCCCCchhhHHHHHHHHHHHHHHhHH-HHHhhcccC
Q 000134 556 CEGLSVLHFFIEQLSRVS------PSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRA-ILKQHIHEF 628 (2096)
Q Consensus 556 ~~~l~~W~~fv~~L~~~~------~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~-~L~~~i~~l 628 (2096)
..++.+|..+++.+.... ...+.+++..++..+....+.. .....++..|...|..|+..-+. .+..++.
T Consensus 763 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-- 839 (876)
T 1qgr_A 763 ESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDE-DHTDGVVACAAGLIGDLCTAFGKDVLKLVEA-- 839 (876)
T ss_dssp HHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCS-CCCHHHHHHHHHHHHHHHHHHCTHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHhCcHHHHHHHh--
Confidence 788999999998876421 1467888888876665544321 10235677888888877654322 2221110
Q ss_pred CCCCChhhhHHHHHHHHHhcCCCCHHHHHHHHHh-hccCCChhHHHHHHHHHHHH
Q 000134 629 PLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVD-GLNHENLNVRYMVVCELSKL 682 (2096)
Q Consensus 629 p~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~-~l~~en~~Vr~~aL~eL~~~ 682 (2096)
...+..+++ .+.+.+..||..|...+..+
T Consensus 840 -------------------------~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~ 869 (876)
T 1qgr_A 840 -------------------------RPMIHELLTEGRRSKTNKAKTLARWATKEL 869 (876)
T ss_dssp -------------------------SHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred -------------------------cHHHHHHHHHHhhcCCHhHHHHHHHHHHHH
Confidence 012334444 55677888887776666554
No 15
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.68 E-value=1.1e-05 Score=109.95 Aligned_cols=436 Identities=14% Similarity=0.109 Sum_probs=251.0
Q ss_pred hhHHHHHHHhhcccC------ccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhh
Q 000134 146 SFLLNIYFEFLYDES------SEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQ 219 (2096)
Q Consensus 146 ~~~~~~~~~~l~~~~------~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~ 219 (2096)
..+-+.+++.|-+.. +..++.++...|..+..+...++. ......+...+.+++-.+|++++..+..+.+
T Consensus 323 ~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~----~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~ 398 (861)
T 2bpt_A 323 KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHIL----EPVLEFVEQNITADNWRNREAAVMAFGSIMD 398 (861)
T ss_dssp HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGH----HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHH----HHHHHHHHHHcCCCChhHHHHHHHHHHHHHc
Confidence 345555666665422 235778888888888877664432 2344455556689999999999999888651
Q ss_pred hhhhhhhccCcc-cccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcc---cchhHHHHHHHHHHhhCCCCc
Q 000134 220 DTVLSSLFLDEN-ASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDV---HSQHFLFLLILLVEQLDNPHV 295 (2096)
Q Consensus 220 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~---~~e~~~~~l~~Li~~L~~~n~ 295 (2096)
+.. .........++..+...+.. .++.+.++.+.++|+++..... ..+.+...+-.|+..|..+ +
T Consensus 399 ---------~~~~~~~~~~l~~il~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~ 467 (861)
T 2bpt_A 399 ---------GPDKVQRTYYVHQALPSILNLMND-QSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-P 467 (861)
T ss_dssp ---------SSCHHHHHHHHHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-H
T ss_pred ---------CCCHHHHHHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-h
Confidence 110 00011113456666665544 4788999999999998654321 2445656666688888775 8
Q ss_pred chHHHHHHHHHHHhhhhcccccccccchhhhhhhhhhHHHHHHhcC---chHH-------HHHHHHHHhCCChHHHHHhh
Q 000134 296 TVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLAS---RPIM-------VREFAEAAFGVETEELVKKM 365 (2096)
Q Consensus 296 ~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~---rp~~-------~~~~~e~llg~~~~~fL~~~ 365 (2096)
-++..|..-+.++++.......+.+.++. +.+.+.+.+.+.+ .+.+ +..+++ ..|-....++..+
T Consensus 468 ~v~~~a~~al~~l~~~~~~~~~~~l~~~~----~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~-~~~~~~~~~~~~l 542 (861)
T 2bpt_A 468 KVATNCSWTIINLVEQLAEATPSPIYNFY----PALVDGLIGAANRIDNEFNARASAFSALTTMVE-YATDTVAETSASI 542 (861)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSCGGGGGH----HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHH-HCCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccchhhHHHH----HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHH-HcchhhHHHHHHH
Confidence 89999999998888765310012233444 3344555555542 1332 122222 2333333344443
Q ss_pred cccccchhhhc--------c----ccC----hhHHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhcc---ccHHHHHHHH
Q 000134 366 IPAVLPKLVVS--------Q----QDN----DQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQ---ADERRLLSAL 426 (2096)
Q Consensus 366 ~~~~LP~LVl~--------~----~~~----~~~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~---~~~~~~~~~l 426 (2096)
.+..+..|--. . ... ..+..++..|++..+..+.+.+..-++.++..+=.. ..++.+..++
T Consensus 543 ~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l 622 (861)
T 2bpt_A 543 STFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAI 622 (861)
T ss_dssp HHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHH
Confidence 33333333211 0 000 023466777777777766665544444444433222 1234455556
Q ss_pred HHHhhhcCCChHHHHHHhhHHHHHHHHHhhcCCCchhHhhhhcchhHHHHHHhhhccCCCChhhhhHHHHHHHHHHhhhh
Q 000134 427 EFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRK 506 (2096)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~l~eLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~ 506 (2096)
..+....+.+....+...+|.++. .+...+.+ .+. .+...+..+.+.+. +. +.+++-.++..+-..
T Consensus 623 ~~l~~~~~~~~~~~l~~i~~~l~~----~l~~~~~~--vr~--~a~~~l~~l~~~~~--~~----~~~~~~~l~~~l~~~ 688 (861)
T 2bpt_A 623 SALAASLGKGFEKYLETFSPYLLK----ALNQVDSP--VSI--TAVGFIADISNSLE--ED----FRRYSDAMMNVLAQM 688 (861)
T ss_dssp HHHHHHHGGGGHHHHHHHHHHHHH----HHHCTTSH--HHH--HHHHHHHHHHHHTG--GG----GHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHH----HhccccHH--HHH--HHHHHHHHHHHHhc--hh----ccchHHHHHHHHHHH
Confidence 555544444444444444444442 23332222 111 12333433343321 23 344444444444333
Q ss_pred hcCCC-ChHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHhcCC-------------CcchhhhHHHHHHHHHhccC
Q 000134 507 MLHAE-DLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKE-------------SLQCEGLSVLHFFIEQLSRV 572 (2096)
Q Consensus 507 l~~~~-~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL~~~-------------~L~~~~l~~W~~fv~~L~~~ 572 (2096)
+.+++ +...|..++.+++.+++.+|+.+.++.++|+-.|..+++.. .++..++++|..++..+.+.
T Consensus 689 l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~ 768 (861)
T 2bpt_A 689 ISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDK 768 (861)
T ss_dssp HHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 33332 35678899999999999999999999999999998888632 36788999999999988642
Q ss_pred CCcchhhHHHHHHHHhhhccccCC-CCchhhHHHHHHHHHHHHHH
Q 000134 573 SPSSTKHVISQVFAALIPFLERDK-DNPSVLLNKVVKILEDLVLK 616 (2096)
Q Consensus 573 ~~~~l~~ll~~i~~~lip~~~~~~-~~~~~~~~~~~~il~~Li~~ 616 (2096)
+..+.+++..++..+........ +....++..|...+..|...
T Consensus 769 -~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~ 812 (861)
T 2bpt_A 769 -PEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAM 812 (861)
T ss_dssp -HHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHH
Confidence 45688888888888877764210 00234677888888877554
No 16
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.67 E-value=0.00012 Score=99.96 Aligned_cols=591 Identities=12% Similarity=0.096 Sum_probs=302.9
Q ss_pred ChhhHHHHHHHhhccc-CccchhhHHHHHHHHHHccCCchhhhhh-hhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhh-
Q 000134 144 DFSFLLNIYFEFLYDE-SSEEVQLSCVRVIRRILVHGTRDVLLKT-RSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQD- 220 (2096)
Q Consensus 144 ~~~~~~~~~~~~l~~~-~~~~v~~~~~~~l~~il~h~~~~~~~~~-~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~- 220 (2096)
.+..+-+.+.+.|-++ ++.+|+.+++.+|..++.+...+..... +...+..+..++.+++..||.+++..+..+++.
T Consensus 169 ~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~ 248 (876)
T 1qgr_A 169 KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY 248 (876)
T ss_dssp GHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 3556666677777665 4789999999999999877443321111 111233334445788899999998888776521
Q ss_pred ----------hhhhhhccC---cccccchhh----------------------------------------HHHHHHHHH
Q 000134 221 ----------TVLSSLFLD---ENASSRSNE----------------------------------------LKLLDVIKL 247 (2096)
Q Consensus 221 ----------~~~~~~~~~---~~~~~~~~~----------------------------------------~~~~~~~~~ 247 (2096)
.++..++.. .+...+..- ..++..+..
T Consensus 249 ~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~ 328 (876)
T 1qgr_A 249 YQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQ 328 (876)
T ss_dssp GGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHH
Confidence 233222221 110100000 111122222
Q ss_pred Hhhh------cCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhccccccccc
Q 000134 248 AFTA------ADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLV 321 (2096)
Q Consensus 248 ~~~~------~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~ 321 (2096)
.+.. -++..+......+++.+.... +.+++...+=.+...|.+++.-+|..|..-+-.++..... +.+.
T Consensus 329 ~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~--~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~---~~~~ 403 (876)
T 1qgr_A 329 TLTKQDENDDDDDWNPCKAAGVCLMLLATCC--EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP---SQLK 403 (876)
T ss_dssp HTTCCCSSCCTTCCCHHHHHHHHHHHHHHHH--GGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCH---HHHH
T ss_pred HhhcccccccccccHHHHHHHHHHHHHHHHC--cHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCH---HHHH
Confidence 2221 123557777777777774433 4556655555677888899999999999999888754321 0111
Q ss_pred chhhhhhhhhhHHHHHHhcCchHHHHHHHHHHhCCChHHHHHhh---------cccccchhhhccccCh----hHHHHHH
Q 000134 322 SKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVKKM---------IPAVLPKLVVSQQDND----QAVNIIN 388 (2096)
Q Consensus 322 ~~~~~~~~~l~~~~~~~l~~rp~~~~~~~e~llg~~~~~fL~~~---------~~~~LP~LVl~~~~~~----~~~~~i~ 388 (2096)
++. +.+.+.+++.|...-..++.-|...+| .|.... .+.++|.|+-.-+.+. .+...|.
T Consensus 404 ~~~----~~~l~~l~~~l~d~~~~vr~~a~~~l~----~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~v~~~a~~al~ 475 (876)
T 1qgr_A 404 PLV----IQAMPTLIELMKDPSVVVRDTAAWTVG----RICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFS 475 (876)
T ss_dssp HHH----HHHHHHHHHHHTCSSHHHHHHHHHHHH----HHHHHCGGGTSSTTTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHHHhCCCCHHHHHHHHHHHH----HHHHhCchhcccHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 222 445566666665433333433322222 222211 1223333332211111 1234555
Q ss_pred HHHHHcC-------CC---chhHHhhhHHHHHHHHhc---cc---c---HHHHHHHHHHHhhhcCCChHHHHHHhhHHHH
Q 000134 389 ELAKCLN-------TD---MVPLIVTWIPKVLAFALH---QA---D---ERRLLSALEFYCIQTGSDNQEIFAAALPALL 449 (2096)
Q Consensus 389 ~ia~~~~-------~~---~~~l~~~~~~~Ila~ll~---~~---~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 449 (2096)
.++...+ .. -...+..+++.|+..|+. .. . +..+.++|..+....+.+....+...+|.++
T Consensus 476 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~ 555 (876)
T 1qgr_A 476 SLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIM 555 (876)
T ss_dssp HHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHH
T ss_pred HHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHH
Confidence 5555433 00 011223355555555542 11 1 2346677776666666666666666666666
Q ss_pred HHHHHhh--cC---CCchhH--hhhhcchhHHHHHHhhhccCCCChhhhhHHHHHHHHHHhhhhhcCCCC-hHHHHHHHH
Q 000134 450 DELICFV--DG---GDSDEI--NERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAED-LSLQKQALK 521 (2096)
Q Consensus 450 ~eLl~~~--~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~-~~~k~~~l~ 521 (2096)
..+--.+ .. ++.|.. ......+...+..+.+.+ |.+.+..|+. .|+..+-..+.+..+ ...+..++.
T Consensus 556 ~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~~~~----~l~~~l~~~l~~~~~~~~v~~~a~~ 630 (876)
T 1qgr_A 556 ERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKV-QHQDALQISD----VVMASLLRMFQSTAGSGGVQEDALM 630 (876)
T ss_dssp HHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTS-CHHHHHTTHH----HHHHHHHHHC-----CCHHHHHHHH
T ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHh-ChhhhhHHHH----HHHHHHHHHHHhccCCCCccHHHHH
Confidence 4332111 00 122210 000011223333333211 1123444442 233222221212111 245778999
Q ss_pred HHHHHHHHhccccccchhhHHHHHHHHhc---CCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhccccCCCC
Q 000134 522 RIEILIEMIGSHLTTYVPKILVLLMHAIN---KESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDN 598 (2096)
Q Consensus 522 sl~~li~l~g~~v~~~~pqI~a~L~~aL~---~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~~~ 598 (2096)
.++.+++-+|....++.++++-.|...|. .++++..++.+...+++.+. ..+.+++..++..++..+.... .
T Consensus 631 ~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~----~~~~~~~~~i~~~l~~~l~~~~-~ 705 (876)
T 1qgr_A 631 AVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQ----SNIIPFCDEVMQLLLENLGNEN-V 705 (876)
T ss_dssp HHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHG----GGGHHHHHHHHHHHHHHHTCTT-S
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHH----HhhhhhHHHHHHHHHHHhCCcc-c
Confidence 99999999999888888888888887774 45678889999999998875 4688899999999998886421 1
Q ss_pred chhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCChhhhHHHHHHHHH-hcCCCCH-HHHHHHHHhhccCCChhHHHHHH
Q 000134 599 PSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQE-ARGPMTL-KDQLLAAVDGLNHENLNVRYMVV 676 (2096)
Q Consensus 599 ~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~l~~v~~~l~~-~r~~~~l-~~~l~~~~~~l~~en~~Vr~~aL 676 (2096)
....+..+...+..+....+ ..+ .|.+|.+- ..+.. .....+. .+....+ ...+|..++
T Consensus 706 ~~~~~~~~~~~l~~i~~~~g----~~~-----~~~l~~~~---~~l~~~~~~~~~~~d~~~~~~-------~~~~r~~~~ 766 (876)
T 1qgr_A 706 HRSVKPQILSVFGDIALAIG----GEF-----KKYLEVVL---NTLQQASQAQVDKSDYDMVDY-------LNELRESCL 766 (876)
T ss_dssp CGGGHHHHHHHHHHHHHHHG----GGG-----GGGHHHHH---HHHHHHHTCCCCTTCHHHHHH-------HHHHHHHHH
T ss_pred cHHhhHHHHHHHHHHHHHhc----hhH-----HHHHHHHH---HHHHHHHhccCCCCChHHHHH-------HHHHHHHHH
Confidence 12346677777777755432 222 12223221 11211 1111100 0000111 113555555
Q ss_pred HHHHHHHhhcHHHHHHHHh--cc-CCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhcccCccCcc-ccccccc
Q 000134 677 CELSKLLKLKSEDVTALIN--GE-ACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALGAVDPA-KVKGFSC 752 (2096)
Q Consensus 677 ~eL~~~L~~~~~~l~~~~~--~e-~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IGalDp~-r~~~~~~ 752 (2096)
..+...+..... .+. +. ...-.+.+..++..|...+.+.++ +..++..|+.|||.++..-+. .+.
T Consensus 767 ~~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~---~~~vr~~a~~~l~~l~~~~~~~~~~---- 835 (876)
T 1qgr_A 767 EAYTGIVQGLKG----DQENVHPDVMLVQPRVEFILSFIDHIAGDEDH---TDGVVACAAGLIGDLCTAFGKDVLK---- 835 (876)
T ss_dssp HHHHHHHHHHHC----SSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCC---CHHHHHHHHHHHHHHHHHHCTHHHH----
T ss_pred HHHHHHHHHHcc----CcccccchHHHHHHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHHHHHHhCcHHHH----
Confidence 555444332111 000 00 011125677777666555543211 258999999999998754322 211
Q ss_pred ccccccccChhh-HHHHHHHHHHH-HHHcCCChhhHhHHHHHHHHHHHH
Q 000134 753 QRFKIECSDDDL-IFELIDKHLAR-AFRAAPDTIIQDSAALAIQELLKI 799 (2096)
Q Consensus 753 ~~~~~~~~~~~f-~~~ll~~~Lv~-af~s~~dt~~Q~~~A~AiQElLk~ 799 (2096)
+| .-.++.. |++ ++ ...|+.....++||+..+.+.
T Consensus 836 ----------~~~~~~~i~~-ll~~~l-~~~~~~~r~~a~~a~~~~~~~ 872 (876)
T 1qgr_A 836 ----------LVEARPMIHE-LLTEGR-RSKTNKAKTLARWATKELRKL 872 (876)
T ss_dssp ----------HHHTSHHHHH-HHHHHH-HCSCHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHhcHHHHH-HHHHHh-hcCCHhHHHHHHHHHHHHHHh
Confidence 11 1122332 334 44 567888899999999998875
No 17
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.58 E-value=0.00046 Score=89.60 Aligned_cols=556 Identities=14% Similarity=0.131 Sum_probs=286.9
Q ss_pred HHHHhhhcccchhhhhhhhhhchhhhhhhcCccc-hHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCcccccccccc
Q 000134 6 SEILDLALRDEFDEVRAEAVISLPVIVMWSGLGV-LTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDK 84 (2096)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (2096)
...+-..|.++..++|..|+..+.-++..-||.. ...+...|.... +..+.|++.++..||-+....|..
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~-------- 82 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGP-------- 82 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSG--------
T ss_pred HHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcH--------
Confidence 3455567899999999999999988887767642 122233333222 334456666555555332211100
Q ss_pred cccccccccccccccccHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhcccCccch
Q 000134 85 NACKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEV 164 (2096)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v 164 (2096)
.. ...+-+++..+ ....+.+|
T Consensus 83 --------------------------------~~--------------------------~~~ll~~L~~l-~~~~~~~v 103 (588)
T 1b3u_A 83 --------------------------------EY--------------------------VHCLLPPLESL-ATVEETVV 103 (588)
T ss_dssp --------------------------------GG--------------------------GGGGHHHHHHH-TTSSCHHH
T ss_pred --------------------------------HH--------------------------HHHHHHHHHHH-HhCchHHH
Confidence 00 01133434443 34456789
Q ss_pred hhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHHHHH
Q 000134 165 QLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDV 244 (2096)
Q Consensus 165 ~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (2096)
+-+.+..|..+..+.+.+..... ...-+..+..+++..+|.+++..+..+... .+ ......++..
T Consensus 104 R~~a~~~L~~l~~~~~~~~~~~~---l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~---------~~---~~~~~~l~~~ 168 (588)
T 1b3u_A 104 RDKAVESLRAISHEHSPSDLEAH---FVPLVKRLAGGDWFTSRTSACGLFSVCYPR---------VS---SAVKAELRQY 168 (588)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHT---HHHHHHHHHTCSSHHHHHHHGGGHHHHTTT---------SC---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHH---HHHHHHHHhcCCCcHHHHHHHHHHHHHHHh---------cC---HHHHHHHHHH
Confidence 99999999999988775422122 233344455788889999999888875411 11 1123444444
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHH-HHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccch
Q 000134 245 IKLAFTAADDPLILETLLESTAELMMAVDVHSQHFL-FLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSK 323 (2096)
Q Consensus 245 ~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~-~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~ 323 (2096)
+... ..-+|+.|....+.++|.++.. .+.+... ..+=.|+..+..++..||..|..-+..++......
T Consensus 169 l~~l-~~d~~~~VR~~a~~~l~~l~~~--~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~-------- 237 (588)
T 1b3u_A 169 FRNL-CSDDTPMVRRAAASKLGEFAKV--LELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE-------- 237 (588)
T ss_dssp HHHH-HTCSCHHHHHHHHHHHHHHHHT--SCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--------
T ss_pred HHHH-hCCCCHHHHHHHHHHHHHHHHH--hcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH--------
Confidence 4443 3446788999999999998543 2443322 22334667778889999999999998887654221
Q ss_pred hhhhhhhhhHHHHHHhcCchHHHHHHHHHHhCCChHHHHH-----hhcccccchhhhcc-ccChhH----HHHHHHHHHH
Q 000134 324 AVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVK-----KMIPAVLPKLVVSQ-QDNDQA----VNIINELAKC 393 (2096)
Q Consensus 324 ~~~~~~~l~~~~~~~l~~rp~~~~~~~e~llg~~~~~fL~-----~~~~~~LP~LVl~~-~~~~~~----~~~i~~ia~~ 393 (2096)
...+.+.+.+.+.+...-..+|..|-..+| .+.. ...+.++|.++-.- ..+..+ ...+..++..
T Consensus 238 --~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~----~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 311 (588)
T 1b3u_A 238 --DLEALVMPTLRQAAEDKSWRVRYMVADKFT----ELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCEN 311 (588)
T ss_dssp --HHHHHTHHHHHHHHTCSSHHHHHHHHHTHH----HHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHHccCCCHHHHHHHHHHHH----HHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 111222333333222221223333222222 1111 11234566665432 222222 2445556655
Q ss_pred cCCCch--hHHhhhHHHHHHHHhccccH---HHHHHHHHHHhhhcCCChHHHHHHhhHHHHHHHHHhhcCCCchhHhhhh
Q 000134 394 LNTDMV--PLIVTWIPKVLAFALHQADE---RRLLSALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERL 468 (2096)
Q Consensus 394 ~~~~~~--~l~~~~~~~Ila~ll~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~eLl~~~~~~~~~~~~~~~ 468 (2096)
++.... +.+..-+|.+.. ++...+. ..+..+|..+....+. +......+|.++ + .+++.+.+ .+..
T Consensus 312 ~~~~~~~~~~~~~l~p~l~~-~l~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~p~l~-~---~l~d~~~~--Vr~~ 382 (588)
T 1b3u_A 312 LSADCRENVIMSQILPCIKE-LVSDANQHVKSALASVIMGLSPILGK--DNTIEHLLPLFL-A---QLKDECPE--VRLN 382 (588)
T ss_dssp SCTTTHHHHHHHTHHHHHHH-HHTCSCHHHHHHHHTTGGGGHHHHCH--HHHHHHTHHHHH-H---HHTCSCHH--HHHH
T ss_pred hChhhhhhHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHhhH--hHHHHHHHHHHH-H---HhCCCchH--HHHH
Confidence 544321 111122222222 2222221 2233333333322221 111222333333 2 33443322 1111
Q ss_pred cchhHHHHHHhhhccCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHH
Q 000134 469 NRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHA 548 (2096)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~a 548 (2096)
+..++..+.+.+ +.+ .+.+.++-.+..+ ...++...|..++..|+.+.+.+|+. .+.|+++..|...
T Consensus 383 --a~~~l~~l~~~~-~~~----~~~~~~lp~l~~~----~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~ 449 (588)
T 1b3u_A 383 --IISNLDCVNEVI-GIR----QLSQSLLPAIVEL----AEDAKWRVRLAIIEYMPLLAGQLGVE--FFDEKLNSLCMAW 449 (588)
T ss_dssp --HHTTCHHHHHHS-CHH----HHHHHHHHHHHHH----HTCSSHHHHHHHHHHHHHHHHHHCGG--GCCHHHHHHHHHG
T ss_pred --HHHHHHHHHHhc-CHH----HHHHHHHHHHHHH----hcCCCchHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHH
Confidence 122222222211 111 1223333333221 23345667788999999999999985 3457888888888
Q ss_pred hcC--CCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhccccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcc
Q 000134 549 INK--ESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIH 626 (2096)
Q Consensus 549 L~~--~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~ 626 (2096)
|.. +++|..++.++..++..+.. + ..+..++..++.+.. +.....+..+...+..+.......
T Consensus 450 l~d~~~~Vr~~a~~~l~~l~~~~~~---~---~~~~~llp~l~~~~~---~~~~~~R~~a~~~l~~l~~~~~~~------ 514 (588)
T 1b3u_A 450 LVDHVYAIREAATSNLKKLVEKFGK---E---WAHATIIPKVLAMSG---DPNYLHRMTTLFCINVLSEVCGQD------ 514 (588)
T ss_dssp GGCSSHHHHHHHHHHHHHHHHHHCH---H---HHHHHTHHHHHHTTT---CSCHHHHHHHHHHHHHHHHHHHHH------
T ss_pred hcCCcHHHHHHHHHHHHHHHHHhCc---h---hHHHHHHHHHHHHhh---CCCHHHHHHHHHHHHHHHHhcCHH------
Confidence 864 35889999999999888642 1 123344444444433 222344556666666553321110
Q ss_pred cCCCCCChhhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHH
Q 000134 627 EFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLS 706 (2096)
Q Consensus 627 ~lp~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~~l~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~ 706 (2096)
. -...-+..+.+.++++++.||..++.-|..+...-..... -.
T Consensus 515 ---------------~---------~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~-------------~~ 557 (588)
T 1b3u_A 515 ---------------I---------TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL-------------QS 557 (588)
T ss_dssp ---------------H---------HHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHH-------------HH
T ss_pred ---------------H---------HHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhh-------------HH
Confidence 0 0123345566778888999999999999887754322110 01
Q ss_pred HHHHHHHHHhhhhccccchhhHHHHHHHhhcccC
Q 000134 707 TLISSLLRGCAEESRTVVGQKLKLVCADCLGALG 740 (2096)
Q Consensus 707 ~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IG 740 (2096)
.++..|.....+ .+.+++..+.++|+.|.
T Consensus 558 ~~~p~l~~l~~d-----~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 558 EVKPILEKLTQD-----QDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHHTTC-----SSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCC-----CchhHHHHHHHHHHHhh
Confidence 222222222222 24689999999998764
No 18
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.53 E-value=0.0002 Score=85.38 Aligned_cols=325 Identities=13% Similarity=0.038 Sum_probs=191.2
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhccCChhHHHHHh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSN 1124 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~~sl~~qil~~ 1124 (2096)
.++...++-|.|..|+-+++..+... | +.++...+. ...+
T Consensus 8 ~~~~~~~~~g~~~~A~~~~~~~l~~~-----p-----------------------~~~~~~~~~------------a~~~ 47 (359)
T 3ieg_A 8 ELGKKLLAAGQLADALSQFHAAVDGD-----P-----------------------DNYIAYYRR------------ATVF 47 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-----T-----------------------TCHHHHHHH------------HHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-----c-----------------------ccHHHHHHH------------HHHH
Confidence 57888899999999999999877642 1 111222222 2234
Q ss_pred HhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccCh---hhhhhHhHHH-----------H
Q 000134 1125 KKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIP---QYKKTWCMQG-----------V 1190 (2096)
Q Consensus 1125 E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p---~~~~~~~~~~-----------v 1190 (2096)
...|+|++|..+|+++++..|++......+-.|+...|+++......+......| +....+..++ .
T Consensus 48 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 127 (359)
T 3ieg_A 48 LAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQA 127 (359)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888887787777777777777788888777776666555555 4333332222 4
Q ss_pred HHHHhcCChhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhh
Q 000134 1191 QAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRA 1270 (2096)
Q Consensus 1191 EAAWrlg~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~ 1270 (2096)
......|+|+.-.+++...-.. .+.+......+|.++ +..++..+..+.++.+.. +.....+ .
T Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~~~--~~~~~~~~A~~~~~~~~~-----~~~~~~~----~ 190 (359)
T 3ieg_A 128 LDAFDGADYTAAITFLDKILEV------CVWDAELRELRAECF--IKEGEPRKAISDLKAASK-----LKSDNTE----A 190 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHH--HHTTCHHHHHHHHHHHHT-----TCSCCHH----H
T ss_pred HHHHHccCHHHHHHHHHHHHHh------CCCchHHHHHHHHHH--HHCCCHHHHHHHHHHHHH-----hCCCCHH----H
Confidence 6677888887776666543221 011223333444443 445555544443332221 1111111 1
Q ss_pred hHHHHHh-hhhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhH
Q 000134 1271 YPFIVKL-HLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVG 1349 (2096)
Q Consensus 1271 y~~l~kL-H~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~ 1349 (2096)
+-.+-.+ ....+.+++...+ +.=+..-..+...+..+-.+. ..
T Consensus 191 ~~~la~~~~~~~~~~~A~~~~------------------------~~a~~~~~~~~~~~~~~~~~~------------~~ 234 (359)
T 3ieg_A 191 FYKISTLYYQLGDHELSLSEV------------------------RECLKLDQDHKRCFAHYKQVK------------KL 234 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHH------------------------HHHHHHCTTCHHHHHHHHHHH------------HH
T ss_pred HHHHHHHHHHcCCHHHHHHHH------------------------HHHHhhCccchHHHHHHHHHH------------HH
Confidence 1111111 1112222222211 111111111111111111111 12
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCh------HHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000134 1350 NCWLQYAKLCRLAGHYETATRAILEAQASGAPN------VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2096)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~all~a~~~~~~~------~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~ 1423 (2096)
...+..|.+..+.|.++.|...+.++....+.+ +....|..+...|+..+|+..++++++..|
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~----------- 303 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP----------- 303 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-----------
Confidence 334566888999999999999999988765442 344578999999999999999999876311
Q ss_pred ccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHH
Q 000134 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDV 1500 (2096)
Q Consensus 1424 ~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l 1500 (2096)
..+.++..+|......|+ .++....|+++++++|....++..+++-+..+
T Consensus 304 -------------------------~~~~~~~~~~~~~~~~g~--~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 304 -------------------------DNVNALKDRAEAYLIEEM--YDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp -------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred -------------------------ccHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 013456677776666664 78899999999999999988888888776543
No 19
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.38 E-value=0.00029 Score=91.25 Aligned_cols=151 Identities=9% Similarity=-0.047 Sum_probs=99.9
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH-hcc--------
Q 000134 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL-HKS-------- 1114 (2096)
Q Consensus 1044 ~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~-~~~-------- 1114 (2096)
..++.+..++|.|.+|+.+++....... ....+..|..+|...++.|....+... ...
T Consensus 121 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 187 (597)
T 2xpi_A 121 FWLAQVYCCTGDYARAKCLLTKEDLYNR-------------SSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNAN 187 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCGGGT-------------CHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC-------
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHhcccc-------------chhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccc
Confidence 3688999999999999999987532110 124677899999999999988887651 111
Q ss_pred -------------CChhHHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHH-------------------------
Q 000134 1115 -------------LSLQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLN------------------------- 1156 (2096)
Q Consensus 1115 -------------~sl~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~------------------------- 1156 (2096)
......+..|.+.|++++|..+|+++++..|++.+....+..
T Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 267 (597)
T 2xpi_A 188 KLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKED 267 (597)
T ss_dssp ---CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGG
T ss_pred cccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccch
Confidence 112345667889999999999999999999987665433322
Q ss_pred -------------HHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChhhHHHhhccc
Q 000134 1157 -------------CLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMDEYLSGA 1209 (2096)
Q Consensus 1157 -------------CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd~l~~~l~~~ 1209 (2096)
++.+.|+++......+.+... |.. .......+.+..+.|+++.-.++...+
T Consensus 268 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 331 (597)
T 2xpi_A 268 AAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKS-SDLLLCKADTLFVRSRFIDVLAITTKI 331 (597)
T ss_dssp HHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGC-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-Cch-HHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 223446666655555544332 221 122233456777888888776665543
No 20
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.37 E-value=0.00057 Score=85.02 Aligned_cols=325 Identities=12% Similarity=0.049 Sum_probs=182.7
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhccCChhHHHHHh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSN 1124 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~~sl~~qil~~ 1124 (2096)
.++....++|.|..|+-+++..+... |. ....+..+..+|
T Consensus 31 ~~~~~~~~~g~~~~A~~~~~~~l~~~-----p~-------~~~~~~~l~~~~---------------------------- 70 (450)
T 2y4t_A 31 ELGKKLLAAGQLADALSQFHAAVDGD-----PD-------NYIAYYRRATVF---------------------------- 70 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-----TT-------CHHHHHHHHHHH----------------------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-----Cc-------cHHHHHHHHHHH----------------------------
Confidence 57888899999999999999876532 10 112233333343
Q ss_pred HhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhh---hhHhH-----------HHH
Q 000134 1125 KKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYK---KTWCM-----------QGV 1190 (2096)
Q Consensus 1125 E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~---~~~~~-----------~~v 1190 (2096)
...|++++|..+|+++++..|++......+-.|+..+|+++......+......|... ..+.. ...
T Consensus 71 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 150 (450)
T 2y4t_A 71 LAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQA 150 (450)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666556666666666666665555554444334322 11111 113
Q ss_pred HHHHhcCChhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhh
Q 000134 1191 QAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRA 1270 (2096)
Q Consensus 1191 EAAWrlg~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~ 1270 (2096)
.+....|+|+.-.+++..+-.. .+.+......+|.++ ...++..+..+.++.+... .......
T Consensus 151 ~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~-----~~~~~~~---- 213 (450)
T 2y4t_A 151 LNAFGSGDYTAAIAFLDKILEV------CVWDAELRELRAECF--IKEGEPRKAISDLKAASKL-----KNDNTEA---- 213 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHH--HHTTCGGGGHHHHHHHHHH-----HCSCHHH----
T ss_pred HHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHH--HHCCCHHHHHHHHHHHHHh-----CCCCHHH----
Confidence 4456778887766655543211 011222333444443 4456665555444433221 1111111
Q ss_pred hHHHHH-hhhhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhH
Q 000134 1271 YPFIVK-LHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVG 1349 (2096)
Q Consensus 1271 y~~l~k-LH~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~ 1349 (2096)
+-.+.. +....+.+++...+ +.=+..-.++...+..+-.++ ..
T Consensus 214 ~~~l~~~~~~~g~~~~A~~~~------------------------~~~~~~~p~~~~~~~~~~~~~------------~~ 257 (450)
T 2y4t_A 214 FYKISTLYYQLGDHELSLSEV------------------------RECLKLDQDHKRCFAHYKQVK------------KL 257 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH------------------------HHHHHHCTTCHHHHHHHHHHH------------HH
T ss_pred HHHHHHHHHHcCCHHHHHHHH------------------------HHHHHhCCChHHHHHHHHHHH------------HH
Confidence 111111 11112222222221 111111111111111111111 12
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCh------HHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000134 1350 NCWLQYAKLCRLAGHYETATRAILEAQASGAPN------VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2096)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~all~a~~~~~~~------~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~ 1423 (2096)
..++..+....+.|.++.|...+.++....+.+ +....|.++...|+..+|+..+++++...|
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p----------- 326 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP----------- 326 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-----------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-----------
Confidence 345667999999999999999999988765432 566778999999999999999999875211
Q ss_pred ccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHH
Q 000134 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDV 1500 (2096)
Q Consensus 1424 ~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l 1500 (2096)
..+.++..+|......|+ .++.+..|++++++.|....+|..+|......
T Consensus 327 -------------------------~~~~~~~~l~~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 376 (450)
T 2y4t_A 327 -------------------------DNVNALKDRAEAYLIEEM--YDEAIQDYETAQEHNENDQQIREGLEKAQRLL 376 (450)
T ss_dssp -------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred -------------------------ccHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHh
Confidence 013456666666655554 78899999999999999999999998765443
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.31 E-value=0.00015 Score=85.56 Aligned_cols=278 Identities=10% Similarity=0.046 Sum_probs=176.7
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcC-
Q 000134 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLG- 1197 (2096)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg- 1197 (2096)
..+..+...|+|++|...|+.+++..|.+......+..|+..+|+++......+......|.....+.. ...+....|
T Consensus 27 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~ 105 (330)
T 3hym_B 27 SLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFA-VGCYYLMVGH 105 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH-HHHHHHHSCS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHH-HHHHHHHhhh
Confidence 345556678999999999999999999999888889999999999999988888776666654443333 345677889
Q ss_pred ChhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHHHHh
Q 000134 1198 RWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKL 1277 (2096)
Q Consensus 1198 ~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~kL 1277 (2096)
+|+.-.+++...-.. .+........+|.++ ...++..+..+.++.+... .......+.. .-.-+
T Consensus 106 ~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~---l~~~~ 169 (330)
T 3hym_B 106 KNEHARRYLSKATTL------EKTYGPAWIAYGHSF--AVESEHDQAMAAYFTAAQL-----MKGCHLPMLY---IGLEY 169 (330)
T ss_dssp CHHHHHHHHHHHHTT------CTTCTHHHHHHHHHH--HHHTCHHHHHHHHHHHHHH-----TTTCSHHHHH---HHHHH
T ss_pred hHHHHHHHHHHHHHh------CCccHHHHHHHHHHH--HHccCHHHHHHHHHHHHHh-----ccccHHHHHH---HHHHH
Confidence 898666665543221 011223334455444 3345554444333332221 1110011000 00000
Q ss_pred hhhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHH
Q 000134 1278 HLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAK 1357 (2096)
Q Consensus 1278 H~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~Ak 1357 (2096)
....+.+++.. .+ +++ +.. .+.....|...+.
T Consensus 170 ~~~~~~~~A~~------------------------~~--------------------~~a-l~~---~~~~~~~~~~l~~ 201 (330)
T 3hym_B 170 GLTNNSKLAER------------------------FF--------------------SQA-LSI---APEDPFVMHEVGV 201 (330)
T ss_dssp HHTTCHHHHHH------------------------HH--------------------HHH-HTT---CTTCHHHHHHHHH
T ss_pred HHHhhHHHHHH------------------------HH--------------------HHH-HHh---CCCChHHHHHHHH
Confidence 00111111111 11 111 111 1123567889999
Q ss_pred HHHHcCChHHHHHHHHHHhhc-----------CCChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000134 1358 LCRLAGHYETATRAILEAQAS-----------GAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2096)
Q Consensus 1358 lARKag~~~~A~~all~a~~~-----------~~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~ 1426 (2096)
+..+.|+++.|...+.++... ..+.+....|.++...|+..+|+..++++++..|
T Consensus 202 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-------------- 267 (330)
T 3hym_B 202 VAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP-------------- 267 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--------------
T ss_pred HHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc--------------
Confidence 999999999999999888654 2246888999999999999999999999876311
Q ss_pred cCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHH
Q 000134 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDD 1499 (2096)
Q Consensus 1427 ~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~ 1499 (2096)
. .+.++..+|......|+ .++..+.|+++.++.|....+++.+|..+..
T Consensus 268 -----~-----------------~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 316 (330)
T 3hym_B 268 -----Q-----------------NASTYSAIGYIHSLMGN--FENAVDYFHTALGLRRDDTFSVTMLGHCIEM 316 (330)
T ss_dssp -----T-----------------CSHHHHHHHHHHHHHTC--HHHHHHHHHTTTTTCSCCHHHHHHHHHHHHT
T ss_pred -----c-----------------chHHHHHHHHHHHHhcc--HHHHHHHHHHHHccCCCchHHHHHHHHHHHH
Confidence 0 02245556666555554 6788899999999999999999999887643
No 22
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.29 E-value=0.00013 Score=94.73 Aligned_cols=479 Identities=12% Similarity=0.085 Sum_probs=249.4
Q ss_pred cchhhhhhhhhhchhhhhhhc-CccchHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCccccccccccccccccccc
Q 000134 15 DEFDEVRAEAVISLPVIVMWS-GLGVLTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDKNACKLLLNV 93 (2096)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (2096)
|+.++||..++..+.-++..- |+.....++..|+.+..++...|++....+||-+.-..+.. ...+
T Consensus 59 d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~-----~~~~-------- 125 (588)
T 1b3u_A 59 YDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPS-----DLEA-------- 125 (588)
T ss_dssp CCCHHHHHHHHHHHTTCSGGGTSGGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH-----HHHH--------
T ss_pred CCcHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHH-----HHHH--------
Confidence 778899999998888776553 45556667777887877778899999888888876544321 0000
Q ss_pred ccccccccHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhcccCccchhhHHHHHHH
Q 000134 94 EDDILSQTVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCVRVIR 173 (2096)
Q Consensus 94 ~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~l~ 173 (2096)
.+..++..+. .-+...+. +.-..++. .+. ..++ ...-..+.+++.+++ ...+.+|+.++...|.
T Consensus 126 -------~l~~~l~~l~--~~~~~~~R--~~a~~~l~--~~~-~~~~-~~~~~~l~~~l~~l~-~d~~~~VR~~a~~~l~ 189 (588)
T 1b3u_A 126 -------HFVPLVKRLA--GGDWFTSR--TSACGLFS--VCY-PRVS-SAVKAELRQYFRNLC-SDDTPMVRRAAASKLG 189 (588)
T ss_dssp -------THHHHHHHHH--TCSSHHHH--HHHGGGHH--HHT-TTSC-HHHHHHHHHHHHHHH-TCSCHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHh--cCCCcHHH--HHHHHHHH--HHH-HhcC-HHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 0001111100 00000000 00000000 000 0000 001245677666665 4568899999999999
Q ss_pred HHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHHHHHHHHHhhhcC
Q 000134 174 RILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAAD 253 (2096)
Q Consensus 174 ~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (2096)
.+..+...+... ...+..+..++.|++..||.+++..+..+.+. +. .......++..+... ..-+
T Consensus 190 ~l~~~~~~~~~~---~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~------~~-----~~~~~~~~~~~l~~~-~~d~ 254 (588)
T 1b3u_A 190 EFAKVLELDNVK---SEIIPMFSNLASDEQDSVRLLAVEACVNIAQL------LP-----QEDLEALVMPTLRQA-AEDK 254 (588)
T ss_dssp HHHHTSCHHHHH---HTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHH------SC-----HHHHHHHTHHHHHHH-HTCS
T ss_pred HHHHHhcHHhHH---HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHh------CC-----HHHHHHHHHHHHHHH-ccCC
Confidence 999987754221 22334555666999999999999999886521 01 011123344444443 3456
Q ss_pred ChhHHHHHHHHHHHHHhhhcccchhHH-HHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccchhhhhhhhhh
Q 000134 254 DPLILETLLESTAELMMAVDVHSQHFL-FLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELF 332 (2096)
Q Consensus 254 d~~i~eTll~~~~~i~~~~~~~~e~~~-~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~~~l~ 332 (2096)
++.+..+...++|.|+... +.+.+. ..+=.|+..|..+++-||..|..-+-.++....... ......+.+.
T Consensus 255 ~~~vR~~a~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~------~~~~~~~~l~ 326 (588)
T 1b3u_A 255 SWRVRYMVADKFTELQKAV--GPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADC------RENVIMSQIL 326 (588)
T ss_dssp SHHHHHHHHHTHHHHHHHH--CHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTT------HHHHHHHTHH
T ss_pred CHHHHHHHHHHHHHHHHHh--CcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhh------hhhHHHHHHH
Confidence 7889999999999996543 334322 223346677788999999999999988877653210 0001124455
Q ss_pred HHHHHHhcCchHHHHHHHHHHhCCChHHHH--Hhhcccccchhhhc-cccChhHH----HHHHHHHHHcCCCchhHHhhh
Q 000134 333 DYLSVRLASRPIMVREFAEAAFGVETEELV--KKMIPAVLPKLVVS-QQDNDQAV----NIINELAKCLNTDMVPLIVTW 405 (2096)
Q Consensus 333 ~~~~~~l~~rp~~~~~~~e~llg~~~~~fL--~~~~~~~LP~LVl~-~~~~~~~~----~~i~~ia~~~~~~~~~l~~~~ 405 (2096)
+++.+.+......++.-+-..+|- .-..+ ....++++|.|+-. +..+..++ ..+..+++..+.. .+...-
T Consensus 327 p~l~~~l~d~~~~vR~~a~~~l~~-l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~~ 403 (588)
T 1b3u_A 327 PCIKELVSDANQHVKSALASVIMG-LSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR--QLSQSL 403 (588)
T ss_dssp HHHHHHHTCSCHHHHHHHHTTGGG-GHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH--HHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHH-HHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH--HHHHHH
Confidence 665554443323344332212221 11000 01234566665532 22221211 1222233322211 111122
Q ss_pred HHHHHHHHhcccc---HHHHHHHHHHHhhhcCCChHHHHHHhhHHHHHHHHHhhcCCCchhHhhhhcchhHHHHHHhhhc
Q 000134 406 IPKVLAFALHQAD---ERRLLSALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVL 482 (2096)
Q Consensus 406 ~~~Ila~ll~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~eLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (2096)
+|.+... +.... ...+..+|..+....+.+. + .+.++.-|+..+.+.+.. .+.. +..++..+.+.+
T Consensus 404 lp~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~---~---~~~l~~~l~~~l~d~~~~--Vr~~--a~~~l~~l~~~~ 472 (588)
T 1b3u_A 404 LPAIVEL-AEDAKWRVRLAIIEYMPLLAGQLGVEF---F---DEKLNSLCMAWLVDHVYA--IREA--ATSNLKKLVEKF 472 (588)
T ss_dssp HHHHHHH-HTCSSHHHHHHHHHHHHHHHHHHCGGG---C---CHHHHHHHHHGGGCSSHH--HHHH--HHHHHHHHHHHH
T ss_pred HHHHHHH-hcCCCchHHHHHHHHHHHHHHHcCHHH---H---HHHHHHHHHHHhcCCcHH--HHHH--HHHHHHHHHHHh
Confidence 3333322 21111 2234445544443333211 0 122332333344444332 1111 233443333322
Q ss_pred cCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHhcC--CCcchhhhH
Q 000134 483 TGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINK--ESLQCEGLS 560 (2096)
Q Consensus 483 ~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL~~--~~L~~~~l~ 560 (2096)
. + .|..+.++-.+.. +...++...|..++.+++.+.+.+|... +.++++-.|...+.. +++|..+++
T Consensus 473 ~-~----~~~~~~llp~l~~----~~~~~~~~~R~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~~Vr~~a~~ 541 (588)
T 1b3u_A 473 G-K----EWAHATIIPKVLA----MSGDPNYLHRMTTLFCINVLSEVCGQDI--TTKHMLPTVLRMAGDPVANVRFNVAK 541 (588)
T ss_dssp C-H----HHHHHHTHHHHHH----TTTCSCHHHHHHHHHHHHHHHHHHHHHH--HHHHTHHHHHHGGGCSCHHHHHHHHH
T ss_pred C-c----hhHHHHHHHHHHH----HhhCCCHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHhhCCCCCchHHHHHHH
Confidence 1 1 2333344443332 2234456778889999999999998743 667788788877854 568888999
Q ss_pred HHHHHHHHhc
Q 000134 561 VLHFFIEQLS 570 (2096)
Q Consensus 561 ~W~~fv~~L~ 570 (2096)
++..+...+.
T Consensus 542 ~l~~l~~~~~ 551 (588)
T 1b3u_A 542 SLQKIGPILD 551 (588)
T ss_dssp HHHHHGGGSC
T ss_pred HHHHHHHHhc
Confidence 9998887763
No 23
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.27 E-value=0.00057 Score=81.43 Aligned_cols=304 Identities=13% Similarity=0.094 Sum_probs=187.7
Q ss_pred HHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCCh
Q 000134 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRW 1199 (2096)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~W 1199 (2096)
....+...|+|++|..+|+.+++..|++......+-.|+..+|+++..+...+......|+....+ .....+.+..|+|
T Consensus 9 ~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~ 87 (359)
T 3ieg_A 9 LGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAAR-LQRGHLLLKQGKL 87 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH-HHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHH-HHHHHHHHHcCCh
Confidence 445677899999999999999999999999999999999999999998888877666566544322 3445677889999
Q ss_pred hhHHHhhcccCccCccccCCC-CCcchhHHHHH----------HHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHH
Q 000134 1200 DLMDEYLSGADEEGLLCSSSE-SNASFDMDVAK----------ILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYT 1268 (2096)
Q Consensus 1200 d~l~~~l~~~~~~gl~~~~~~-~~~~f~~~l~k----------aL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~ 1268 (2096)
+.-.+++...-... +.. ........++. +......++..+..+.++.+... ..
T Consensus 88 ~~A~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~------- 151 (359)
T 3ieg_A 88 DEAEDDFKKVLKSN----PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV-----CV------- 151 (359)
T ss_dssp HHHHHHHHHHHTSC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CT-------
T ss_pred HHHHHHHHHHHhcC----CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CC-------
Confidence 87766655432210 000 01111112221 11112222222222222111100 00
Q ss_pred hhhHHHHHhhhhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhh--hccCChhhhhhHHHHHHhhcCcCCCCc
Q 000134 1269 RAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLK--YTQPSLWAREPLLAFRRMVFGASGLGA 1346 (2096)
Q Consensus 1269 r~y~~l~kLH~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~--~~~~~~~~~e~iLslRr~vl~~~~~~~ 1346 (2096)
.... .|..+-. .-..++ .+-+-.++++ +.. .+
T Consensus 152 ----------------------------------~~~~------~~~~~~~~~~~~~~~--~~A~~~~~~~-~~~---~~ 185 (359)
T 3ieg_A 152 ----------------------------------WDAE------LRELRAECFIKEGEP--RKAISDLKAA-SKL---KS 185 (359)
T ss_dssp ----------------------------------TCHH------HHHHHHHHHHHTTCH--HHHHHHHHHH-HTT---CS
T ss_pred ----------------------------------CchH------HHHHHHHHHHHCCCH--HHHHHHHHHH-HHh---CC
Confidence 0000 0000000 000010 1111112221 111 12
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCChH--------------HHHHHHHHHHcCCchHHHHHHHHHhhcCC
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASGAPNV--------------HMEKAKLLWSTRRSDGAIAELQQNLLNKP 1412 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~~~~~~--------------~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~ 1412 (2096)
.....|...+.+..+.|.++.|...+.++....+... .+..|..+...|+..+|+..++++++..|
T Consensus 186 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 265 (359)
T 3ieg_A 186 DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP 265 (359)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3457899999999999999999999999887654321 23558889999999999999999876321
Q ss_pred cccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHH
Q 000134 1413 VEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFY 1492 (2096)
Q Consensus 1413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~ 1492 (2096)
. .......++..+|......|+ .++.++.|.++++.+|....+|+.
T Consensus 266 ~--------------------------------~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~ 311 (359)
T 3ieg_A 266 S--------------------------------VAEYTVRSKERICHCFSKDEK--PVEAIRICSEVLQMEPDNVNALKD 311 (359)
T ss_dssp S--------------------------------SHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred C--------------------------------chHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCcccHHHHHH
Confidence 1 011234556677777666664 889999999999999999999999
Q ss_pred HHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcc
Q 000134 1493 MAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2096)
Q Consensus 1493 la~y~d~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~ 1542 (2096)
+|..|.+. | -...|+..|-+++...+++
T Consensus 312 ~~~~~~~~--------------g--------~~~~A~~~~~~a~~~~p~~ 339 (359)
T 3ieg_A 312 RAEAYLIE--------------E--------MYDEAIQDYEAAQEHNEND 339 (359)
T ss_dssp HHHHHHHT--------------T--------CHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHc--------------C--------CHHHHHHHHHHHHhcCCCC
Confidence 99887432 1 1236888888888877654
No 24
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.22 E-value=0.0026 Score=82.35 Aligned_cols=393 Identities=11% Similarity=0.049 Sum_probs=212.5
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHh--ccCC---hh
Q 000134 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLH--KSLS---LQ 1118 (2096)
Q Consensus 1044 ~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~--~~~s---l~ 1118 (2096)
..++....+.|.|..|+.+++.-+... | ....+..|..+|...++++....+.... ...+ ..
T Consensus 88 ~~~~~~~~~~g~~~~A~~~~~~~~~~~-----p--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 154 (597)
T 2xpi_A 88 RLWRHDALMQQQYKCAAFVGEKVLDIT-----G--------NPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRY 154 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH-----C--------CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHH
T ss_pred HHHHHHHHHccCchHHHHHHHHHHhhC-----C--------CchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHH
Confidence 357788899999999999999876432 1 1235678999999999999877776532 1112 22
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHHccC----------------CCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhh
Q 000134 1119 DELLSNKKSGNWAEVFTSCEQALQME----------------PTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYK 1182 (2096)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~----------------p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~ 1182 (2096)
..+..|.+.|+|++|...|+...... |.+......+..++.+.|+++..+...+.+....|+..
T Consensus 155 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 234 (597)
T 2xpi_A 155 LAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCY 234 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhh
Confidence 34567899999999999998532222 22356677888999999999988887776655545422
Q ss_pred hhHhHHH-------------------------------------HHHHHhcCChhhHHHhhcccCccCccccCCCCCcch
Q 000134 1183 KTWCMQG-------------------------------------VQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASF 1225 (2096)
Q Consensus 1183 ~~~~~~~-------------------------------------vEAAWrlg~Wd~l~~~l~~~~~~gl~~~~~~~~~~f 1225 (2096)
..+..++ +.+..+.|+|+.-.+++..+... +.+...
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~ 307 (597)
T 2xpi_A 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-------EKSSDL 307 (597)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-------GGCHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-------CchHHH
Confidence 2211111 11122345555554444443220 122223
Q ss_pred hHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHHHHhhhhhHHHHHHHhhhccccccccCCCChH
Q 000134 1226 DMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDL 1305 (2096)
Q Consensus 1226 ~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~kLH~L~ELee~~~~~~~~~~~~~~~~~~~~ 1305 (2096)
...++.++ ...++..+..+..+++... .......+...-....+. .+.+++..+..... +. .+.+.
T Consensus 308 ~~~l~~~~--~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~---~~-~~~~~ 373 (597)
T 2xpi_A 308 LLCKADTL--FVRSRFIDVLAITTKILEI-----DPYNLDVYPLHLASLHES---GEKNKLYLISNDLV---DR-HPEKA 373 (597)
T ss_dssp HHHHHHHH--HHTTCHHHHHHHHHHHHHH-----CTTCCTTHHHHHHHHHHH---TCHHHHHHHHHHHH---HH-CTTSH
T ss_pred HHHHHHHH--HHhcCHHHHHHHHHHHHHc-----CcccHHHHHHHHHHHHHh---CCHHHHHHHHHHHH---hh-CcccH
Confidence 33344333 3455555444444333221 111111222211222222 22233222221000 00 00111
Q ss_pred HHHHHHHHHHHHhhh--ccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CC
Q 000134 1306 KFSKLMANWENRLKY--TQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASG--AP 1381 (2096)
Q Consensus 1306 ~~~~l~~~W~~RL~~--~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~ 1381 (2096)
. .|...... -...+ .+-+-.+++++ . ........|...+.+..+.|+++.|...+.++.... .+
T Consensus 374 ~------~~~~l~~~~~~~g~~--~~A~~~~~~~~-~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 441 (597)
T 2xpi_A 374 V------TWLAVGIYYLCVNKI--SEARRYFSKSS-T---MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTH 441 (597)
T ss_dssp H------HHHHHHHHHHHTTCH--HHHHHHHHHHH-H---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCS
T ss_pred H------HHHHHHHHHHHhccH--HHHHHHHHHHH-H---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 0 11111000 00111 11111122211 1 112335678888888888888888888888776654 34
Q ss_pred hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHH
Q 000134 1382 NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWI 1461 (2096)
Q Consensus 1382 ~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl 1461 (2096)
.+....+..+...|+..+|+..++++++..+. .+.++..+|...
T Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------------------------------------~~~~~~~l~~~~ 485 (597)
T 2xpi_A 442 LPYLFLGMQHMQLGNILLANEYLQSSYALFQY------------------------------------DPLLLNELGVVA 485 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC------------------------------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------------------------ChHHHHHHHHHH
Confidence 56667778888888888888888877642110 022344555555
Q ss_pred HHhCCCCHHHHHHHHHHHHHh------ccc-hHHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHH
Q 000134 1462 HYTGQKQKEDVITLYSRVREL------QPM-WEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAK 1534 (2096)
Q Consensus 1462 ~~~~~~~~~~i~~~Y~~a~~l------~~~-weK~~~~la~y~d~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~ 1534 (2096)
...|+ .++..+.|+++.+. .|. |..+|+.+|..|-+. | -...|+..|-+
T Consensus 486 ~~~g~--~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~--------------g--------~~~~A~~~~~~ 541 (597)
T 2xpi_A 486 FNKSD--MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL--------------K--------MYDAAIDALNQ 541 (597)
T ss_dssp HHTTC--HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT--------------T--------CHHHHHHHHHH
T ss_pred HHhCC--HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh--------------c--------CHHHHHHHHHH
Confidence 55554 67788888888877 443 467777777765321 1 12356777777
Q ss_pred hhccCCcc
Q 000134 1535 GLHRGHKN 1542 (2096)
Q Consensus 1535 sl~~g~~~ 1542 (2096)
++..+++.
T Consensus 542 ~~~~~p~~ 549 (597)
T 2xpi_A 542 GLLLSTND 549 (597)
T ss_dssp HHHHSSCC
T ss_pred HHHhCCCC
Confidence 77766543
No 25
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.18 E-value=0.0011 Score=80.98 Aligned_cols=332 Identities=15% Similarity=0.100 Sum_probs=181.2
Q ss_pred HHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCCh
Q 000134 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRW 1199 (2096)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~W 1199 (2096)
....+-+.|++++|...|+.+++..|++......+-.++...|+++......+......|.....+. ....+..+.|+|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~-~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYS-NLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHH-HHHHHHHHCCCH
Confidence 3455667888888888888888888888777666667777778887776666555444454332222 233455677787
Q ss_pred hhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHHHHhhh
Q 000134 1200 DLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLHL 1279 (2096)
Q Consensus 1200 d~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~kLH~ 1279 (2096)
+.-.++...+-.. .+........+|.++. ..++..+..+..+.+... . ++.+...+..-.-+..
T Consensus 84 ~~A~~~~~~al~~------~p~~~~~~~~l~~~~~--~~g~~~~A~~~~~~al~~-----~---p~~~~~~~~l~~~~~~ 147 (388)
T 1w3b_A 84 QEAIEHYRHALRL------KPDFIDGYINLAAALV--AAGDMEGAVQAYVSALQY-----N---PDLYCVRSDLGNLLKA 147 (388)
T ss_dssp HHHHHHHHHHHHH------CTTCHHHHHHHHHHHH--HHSCSSHHHHHHHHHHHH-----C---TTCTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc------CcchHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHh-----C---CCcHHHHHHHHHHHHH
Confidence 7665555433210 0011222344554443 344544444333322211 1 1111000001111112
Q ss_pred hhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHHHH
Q 000134 1280 LQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLC 1359 (2096)
Q Consensus 1280 L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~AklA 1359 (2096)
+.+.+++........ .. .+... ..|...-......-+..+-+-.+++++ . ..+.....|...+.+.
T Consensus 148 ~g~~~~A~~~~~~al--~~--~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~al-~---~~p~~~~~~~~lg~~~ 213 (388)
T 1w3b_A 148 LGRLEEAKACYLKAI--ET--QPNFA------VAWSNLGCVFNAQGEIWLAIHHFEKAV-T---LDPNFLDAYINLGNVL 213 (388)
T ss_dssp TSCHHHHHHHHHHHH--HH--CTTCH------HHHHHHHHHHHTTTCHHHHHHHHHHHH-H---HCTTCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH--Hh--CCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHH-h---cCCCcHHHHHHHHHHH
Confidence 223333332221000 00 00000 011111111100001111222222221 1 1223466788999999
Q ss_pred HHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCc
Q 000134 1360 RLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPV 1437 (2096)
Q Consensus 1360 RKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1437 (2096)
.+.|.++.|...+.++....+ +.+....+.++...|+..+|+..++++++..|.
T Consensus 214 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------------------------ 269 (388)
T 1w3b_A 214 KEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH------------------------ 269 (388)
T ss_dssp HTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS------------------------
T ss_pred HHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------------------------
Confidence 999999999999888877654 456677888999999999999999988752110
Q ss_pred ccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcc
Q 000134 1438 LSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPS 1517 (2096)
Q Consensus 1438 ~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~~~~~~e~~~~~g~~ 1517 (2096)
.+.++..+|......|+ .++.++.|.++++..|....+|+.+|..+.+. |
T Consensus 270 ------------~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--------------g-- 319 (388)
T 1w3b_A 270 ------------FPDAYCNLANALKEKGS--VAEAEDCYNTALRLCPTHADSLNNLANIKREQ--------------G-- 319 (388)
T ss_dssp ------------CHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT--------------T--
T ss_pred ------------CHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc--------------C--
Confidence 02345566666666664 77888999999999998888888887765321 1
Q ss_pred hhhhhchHHHHHHHHHHhhccCCcc
Q 000134 1518 EKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2096)
Q Consensus 1518 ~~~~~~~l~~ai~~Y~~sl~~g~~~ 1542 (2096)
-...++..|-+++...+.+
T Consensus 320 ------~~~~A~~~~~~al~~~p~~ 338 (388)
T 1w3b_A 320 ------NIEEAVRLYRKALEVFPEF 338 (388)
T ss_dssp ------CHHHHHHHHHHHTTSCTTC
T ss_pred ------CHHHHHHHHHHHHhcCCCc
Confidence 1235778888888766553
No 26
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.04 E-value=0.0018 Score=81.57 Aligned_cols=262 Identities=10% Similarity=0.021 Sum_probs=154.0
Q ss_pred hcCHHHHHHHHHHHHc-----c--CCC-------chhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHH
Q 000134 1127 SGNWAEVFTSCEQALQ-----M--EPT-------SVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQA 1192 (2096)
Q Consensus 1127 ~G~W~~A~~~YE~~Lq-----~--~p~-------~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEA 1192 (2096)
.|++++|..+|+.+++ . .|+ +......+-.|+...|+++..+...+......|. .........+
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~ 279 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALI 279 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHH
Confidence 7888889888888887 4 333 3344556677788888888887777766555554 2233344566
Q ss_pred HHhcCChhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhH
Q 000134 1193 AWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYP 1272 (2096)
Q Consensus 1193 AWrlg~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~ 1272 (2096)
.+..|+|+.-.+++...-.. .+........+|.++ ...++..+..+.++.+... ...... ++-
T Consensus 280 ~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~-----~~~~~~----~~~ 342 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKALKL------DSNNSSVYYHRGQMN--FILQNYDQAGKDFDKAKEL-----DPENIF----PYI 342 (514)
T ss_dssp HHTSSCCTTGGGHHHHHHTT------CTTCTHHHHHHHHHH--HHTTCTTHHHHHHHHHHHT-----CSSCSH----HHH
T ss_pred HHHCCCHHHHHHHHHHHhhc------CcCCHHHHHHHHHHH--HHhCCHHHHHHHHHHHHHh-----ChhhHH----HHH
Confidence 77888887765555433211 011122333344333 3445554444433332211 111000 010
Q ss_pred HHHH-hhhhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHH
Q 000134 1273 FIVK-LHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNC 1351 (2096)
Q Consensus 1273 ~l~k-LH~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~ 1351 (2096)
.+.. +....+.+++... + ++++ .. .......
T Consensus 343 ~l~~~~~~~~~~~~A~~~------------------------~--------------------~~~~-~~---~~~~~~~ 374 (514)
T 2gw1_A 343 QLACLAYRENKFDDCETL------------------------F--------------------SEAK-RK---FPEAPEV 374 (514)
T ss_dssp HHHHHTTTTTCHHHHHHH------------------------H--------------------HHHH-HH---STTCSHH
T ss_pred HHHHHHHHcCCHHHHHHH------------------------H--------------------HHHH-HH---cccCHHH
Confidence 0000 0001111111111 1 1100 00 0112457
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC--CCh------HHHHHHHHHHH---cCCchHHHHHHHHHhhcCCcccccccc
Q 000134 1352 WLQYAKLCRLAGHYETATRAILEAQASG--APN------VHMEKAKLLWS---TRRSDGAIAELQQNLLNKPVEVVGSTA 1420 (2096)
Q Consensus 1352 WL~~AklARKag~~~~A~~all~a~~~~--~~~------~~iE~AKLLW~---~g~~~~Ai~~L~~~i~~~~~~~~~~~~ 1420 (2096)
|...+.+..+.|+++.|...+.++.... .+. +....|.++.. .|+..+|+..+++++...|.
T Consensus 375 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------- 447 (514)
T 2gw1_A 375 PNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR------- 447 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-------
Confidence 8899999999999999999998886653 222 88899999999 99999999999998752110
Q ss_pred cccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHH
Q 000134 1421 ISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYM 1493 (2096)
Q Consensus 1421 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~l 1493 (2096)
.+.++..+|......|+ .++....|+++.++.|+....+..+
T Consensus 448 -----------------------------~~~~~~~la~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 448 -----------------------------SEQAKIGLAQMKLQQED--IDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp -----------------------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred -----------------------------cHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhccccHHHHHHH
Confidence 02345666666655554 7888999999999999988887766
No 27
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.01 E-value=0.0029 Score=78.54 Aligned_cols=302 Identities=11% Similarity=0.071 Sum_probs=183.0
Q ss_pred HHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChh
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWD 1200 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd 1200 (2096)
+..+...|+|++|..+|+.+++..|++......+-.|+..+|+++..+...+......|+....+ .....+....|+++
T Consensus 33 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~l~~~~~~~g~~~ 111 (450)
T 2y4t_A 33 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAAR-LQRGHLLLKQGKLD 111 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH-HHHHHHHHHcCCHH
Confidence 44577899999999999999999999999999999999999999998888877666555443222 23456677899998
Q ss_pred hHHHhhcccCccCccccCCCCCc---chhHHHHHH----------HHHHHccCchhHHHHHHHHHHHhhhhhhccchhhH
Q 000134 1201 LMDEYLSGADEEGLLCSSSESNA---SFDMDVAKI----------LQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSY 1267 (2096)
Q Consensus 1201 ~l~~~l~~~~~~gl~~~~~~~~~---~f~~~l~ka----------L~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy 1267 (2096)
.-.+++..+-... +... .....++.+ ......++..+..+.++.+... ..
T Consensus 112 ~A~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~------ 174 (450)
T 2y4t_A 112 EAEDDFKKVLKSN------PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV-----CV------ 174 (450)
T ss_dssp HHHHHHHHHHTSC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CT------
T ss_pred HHHHHHHHHHhcC------CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CC------
Confidence 8776665432210 0111 111111111 1111222222211111111100 00
Q ss_pred HhhhHHHHHhhhhhHHHHHHHhhhccccccccCCCChHHH-HHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCc
Q 000134 1268 TRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKF-SKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGA 1346 (2096)
Q Consensus 1268 ~r~y~~l~kLH~L~ELee~~~~~~~~~~~~~~~~~~~~~~-~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~ 1346 (2096)
..... ..+.. .-.+..... +-+-.+++++ .. ..
T Consensus 175 -----------------------------------~~~~~~~~l~~-~~~~~g~~~------~A~~~~~~~~-~~---~~ 208 (450)
T 2y4t_A 175 -----------------------------------WDAELRELRAE-CFIKEGEPR------KAISDLKAAS-KL---KN 208 (450)
T ss_dssp -----------------------------------TCHHHHHHHHH-HHHHTTCGG------GGHHHHHHHH-HH---HC
T ss_pred -----------------------------------CChHHHHHHHH-HHHHCCCHH------HHHHHHHHHH-Hh---CC
Confidence 00000 00000 000000000 1111111111 00 11
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCChH--H------------HHHHHHHHHcCCchHHHHHHHHHhhcCC
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASGAPNV--H------------MEKAKLLWSTRRSDGAIAELQQNLLNKP 1412 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~~~~~~--~------------iE~AKLLW~~g~~~~Ai~~L~~~i~~~~ 1412 (2096)
.....|...+.+..+.|+++.|...+.++....+... . ++.+..+...|+..+|+..++++++..|
T Consensus 209 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p 288 (450)
T 2y4t_A 209 DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP 288 (450)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 2356899999999999999999999999877654332 1 3348899999999999999999876321
Q ss_pred cccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHH
Q 000134 1413 VEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFY 1492 (2096)
Q Consensus 1413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~ 1492 (2096)
. .....+.++..+|......|+ .++.+..|+++++..|....+|+.
T Consensus 289 ~--------------------------------~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~a~~~~p~~~~~~~~ 334 (450)
T 2y4t_A 289 S--------------------------------IAEYTVRSKERICHCFSKDEK--PVEAIRVCSEVLQMEPDNVNALKD 334 (450)
T ss_dssp S--------------------------------SHHHHHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred c--------------------------------chHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCcccHHHHHH
Confidence 1 011224566677776665554 889999999999999999999999
Q ss_pred HHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcc
Q 000134 1493 MAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2096)
Q Consensus 1493 la~y~d~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~ 1542 (2096)
+|..|... | -...|+..|-+++...+++
T Consensus 335 l~~~~~~~--------------~--------~~~~A~~~~~~al~~~p~~ 362 (450)
T 2y4t_A 335 RAEAYLIE--------------E--------MYDEAIQDYETAQEHNEND 362 (450)
T ss_dssp HHHHHHHT--------------T--------CHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHh--------------c--------CHHHHHHHHHHHHHhCcch
Confidence 99887422 1 1235888888888876653
No 28
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.88 E-value=0.0037 Score=79.45 Aligned_cols=112 Identities=15% Similarity=0.175 Sum_probs=77.8
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~ 1424 (2096)
.....|...+.+..+.|.++.|...+.++.... .+.+....|.++...|+..+|+..++++++..|.
T Consensus 308 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~----------- 376 (537)
T 3fp2_A 308 EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT----------- 376 (537)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------
Confidence 345678888888888888888888888887664 3567778888888888888888888887653210
Q ss_pred cccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhh
Q 000134 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKY 1496 (2096)
Q Consensus 1425 ~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y 1496 (2096)
+ +.++..+|......|+ .++.++.|.++++..|.....|+.+|.+
T Consensus 377 --------~-----------------~~~~~~l~~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 421 (537)
T 3fp2_A 377 --------L-----------------PEVPTFFAEILTDRGD--FDTAIKQYDIAKRLEEVQEKIHVGIGPL 421 (537)
T ss_dssp --------C-----------------THHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHCSSCSSTTHHH
T ss_pred --------C-----------------hHHHHHHHHHHHHhCC--HHHHHHHHHHHHHcCCcchhhHHHHHHH
Confidence 0 1234445555544443 6778888888888887665555544433
No 29
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.78 E-value=0.0034 Score=79.07 Aligned_cols=92 Identities=8% Similarity=-0.051 Sum_probs=70.0
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHH--hccCC---hhHHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhcc
Q 000134 1088 DVSFLMEIYSFLDEPDGLSGLARL--HKSLS---LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMC 1162 (2096)
Q Consensus 1088 ~~~~L~~IYa~LdEpDgl~Gi~~~--~~~~s---l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LG 1162 (2096)
.+-.+...|...++.+........ ...++ .......+.+.|+|++|..+|+++++..|++......+-.|+..+|
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 87 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLG 87 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHh
Confidence 455677888889999888777542 22333 2234566788999999999999999999999888888889999999
Q ss_pred ChHHHHHHhhhhhccCh
Q 000134 1163 HLQAMVTHVDGLISRIP 1179 (2096)
Q Consensus 1163 q~~~ll~~~~gl~~~~p 1179 (2096)
+++......+......|
T Consensus 88 ~~~~A~~~~~~~~~~~~ 104 (514)
T 2gw1_A 88 KFADAMFDLSVLSLNGD 104 (514)
T ss_dssp CHHHHHHHHHHHHHSSS
T ss_pred hHHHHHHHHHHHHhcCC
Confidence 99988777766554444
No 30
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.73 E-value=0.01 Score=82.50 Aligned_cols=196 Identities=10% Similarity=0.096 Sum_probs=98.7
Q ss_pred ChHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHhcCCCcchhhhHHHHHHHHHhccC--CCcchhhHHHHHHHHhh
Q 000134 512 DLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRV--SPSSTKHVISQVFAALI 589 (2096)
Q Consensus 512 ~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL~~~~L~~~~l~~W~~fv~~L~~~--~~~~l~~ll~~i~~~li 589 (2096)
+....+++.+.++.|++.+|+.+.++.|+++..|..+++..+. ...+..=..++..+... ....+..++..++..++
T Consensus 706 ~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~-~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~ 784 (971)
T 2x1g_F 706 EIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCC-APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSF 784 (971)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CC-HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHH
Confidence 4566788999999999999999999999999999999977554 22344444466655431 01124444444444444
Q ss_pred hccccC-----CCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCChhhhHHHHHHHHHhcCCCCHHHHHHHHHhhc
Q 000134 590 PFLERD-----KDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGL 664 (2096)
Q Consensus 590 p~~~~~-----~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~~l 664 (2096)
..+... .+.| .+++....++..++..+...+ ++ .+.++..-+...+..+
T Consensus 785 ~~l~~~~~~~~~~~p-d~~~~~f~ll~~~l~~~p~~~---------~~----------------s~~~l~~i~~~~~~~l 838 (971)
T 2x1g_F 785 KLFESTPEQNFSNIS-DTMETFFGCLTQIIKKIPQVL---------ED----------------KTLAYDRLVFYAQRGM 838 (971)
T ss_dssp HHHTSCTTTHHHHTH-HHHHHHHHHHHHHHHSSGGGG---------GC----------------TTSCHHHHHHHHHHHH
T ss_pred HHHhcccccCCccCc-hHHHHHHHHHHHHHHhCcHHH---------cC----------------CcccHHHHHHHHHHHc
Confidence 444321 0111 112222222222222222111 11 1122444455555666
Q ss_pred cCCChhHHHHHHHHHHHHHhhc--HHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhcccCcc
Q 000134 665 NHENLNVRYMVVCELSKLLKLK--SEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALGAV 742 (2096)
Q Consensus 665 ~~en~~Vr~~aL~eL~~~L~~~--~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IGal 742 (2096)
.++...+..-+++-|..++... +..++..+.. ....|+..++.+...... .......+++|+.|+..
T Consensus 839 ~~~~~~~~~s~~~fl~~~i~~~~~~~~~~~~~~~-------~g~~l~~~l~~~~~~~~~----~s~~~~~a~~l~~l~~~ 907 (971)
T 2x1g_F 839 TLPESGAIRNSIQFLTHFVMQSRNHAHVTEVVLA-------TGEQTLYTAMMCVGYLTP----RSQVDKFADILLAMNRK 907 (971)
T ss_dssp TSSCSSHHHHHHHHHHHHHHHHTTCHHHHHHHHH-------HHHHHHHHHHHHHHTTSC----GGGGGGGHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH-------hHHHHHHHHHHHhcccCC----hhHHHHHHHHHHHHHHH
Confidence 6666666666666666655542 2223333331 234566666555432111 12233456677777766
Q ss_pred Ccc
Q 000134 743 DPA 745 (2096)
Q Consensus 743 Dp~ 745 (2096)
.|.
T Consensus 908 ~~~ 910 (971)
T 2x1g_F 908 YAA 910 (971)
T ss_dssp HHH
T ss_pred CcH
Confidence 664
No 31
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.70 E-value=0.023 Score=78.77 Aligned_cols=148 Identities=11% Similarity=0.176 Sum_probs=88.8
Q ss_pred ChHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHhcCCCcchhhhHHHHHHHHHhccC--CCcchhhHHHHHHHHhh
Q 000134 512 DLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRV--SPSSTKHVISQVFAALI 589 (2096)
Q Consensus 512 ~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL~~~~L~~~~l~~W~~fv~~L~~~--~~~~l~~ll~~i~~~li 589 (2096)
+......+.+.++.++..+|.+..++.|+++..+.......+. ...++.-..++...... ....+..++..++..++
T Consensus 698 ~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~-~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l 776 (963)
T 2x19_B 698 DAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQ-ASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTL 776 (963)
T ss_dssp CHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCC-HHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCCc-cHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999999999999888777654322 23445555566633211 01123333344444444
Q ss_pred hcccc-CCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCChhhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCC
Q 000134 590 PFLER-DKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHEN 668 (2096)
Q Consensus 590 p~~~~-~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~~l~~en 668 (2096)
+.+.. ..+.| .+++...+++..++..+...+ ++ .+..+..-+..++..+++..
T Consensus 777 ~~~~~~~~~~p-d~~~~~f~ll~~~~~~~~~~~---------~~----------------~~~~~~~i~~~~~~~l~~~~ 830 (963)
T 2x19_B 777 TLFQQGPRDHP-DIVDSFMQLLAQALKRKPDLF---------LC----------------ERLDVKAVFQCAVLALKFPE 830 (963)
T ss_dssp HHHHHCTTTCH-HHHHHHHHHHHHHHHHCGGGG---------GC----------------TTSCHHHHHHHHHHHTTCSC
T ss_pred HHHhhCcccCc-hHHHHHHHHHHHHHHhCcHHH---------cC----------------CcccHHHHHHHHHHHcCCCC
Confidence 44432 21222 345556666665554333221 01 11124555666777888889
Q ss_pred hhHHHHHHHHHHHHHhhc
Q 000134 669 LNVRYMVVCELSKLLKLK 686 (2096)
Q Consensus 669 ~~Vr~~aL~eL~~~L~~~ 686 (2096)
..|...++.-|..++...
T Consensus 831 ~~~~~~~l~~l~~l~~~~ 848 (963)
T 2x19_B 831 APTVKASCGFFTELLPRC 848 (963)
T ss_dssp HHHHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999999988653
No 32
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.69 E-value=0.0027 Score=76.51 Aligned_cols=114 Identities=13% Similarity=0.096 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~ 1426 (2096)
...|...+.+..+.|.++.|...+.++....+ +.+....|.++...|+..+|+..+++++...|
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------- 282 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-------------- 282 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------
Confidence 56788899999999999999999999887653 46788899999999999999999999876211
Q ss_pred cCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccch-----------HHHHHHHHh
Q 000134 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMW-----------EKGYFYMAK 1495 (2096)
Q Consensus 1427 ~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~w-----------eK~~~~la~ 1495 (2096)
..+.++..+|......|+ .++.+..|++++++.|.. ..+|+.+|.
T Consensus 283 ----------------------~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~ 338 (368)
T 1fch_A 283 ----------------------GYIRSRYNLGISCINLGA--HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRL 338 (368)
T ss_dssp ----------------------TCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHH
T ss_pred ----------------------CcHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHH
Confidence 013355666666666664 788899999999999887 788999988
Q ss_pred hhHHH
Q 000134 1496 YCDDV 1500 (2096)
Q Consensus 1496 y~d~l 1500 (2096)
.|..+
T Consensus 339 ~~~~~ 343 (368)
T 1fch_A 339 ALSML 343 (368)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77544
No 33
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.66 E-value=0.0035 Score=79.72 Aligned_cols=112 Identities=10% Similarity=0.086 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~ 1426 (2096)
...|...+.+..+.|.++.|...+.++.... .+.+....|.++...|+..+|+..+++++...|.
T Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------------- 342 (537)
T 3fp2_A 276 PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE------------- 342 (537)
T ss_dssp HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-------------
Confidence 5678888888888888888888888877654 3567778888888888888888888887652110
Q ss_pred cCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhH
Q 000134 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCD 1498 (2096)
Q Consensus 1427 ~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d 1498 (2096)
+ +.++..+|......|+ .++.++.|+++++..|....+|+.+|..|-
T Consensus 343 ------~-----------------~~~~~~la~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 389 (537)
T 3fp2_A 343 ------N-----------------VYPYIQLACLLYKQGK--FTESEAFFNETKLKFPTLPEVPTFFAEILT 389 (537)
T ss_dssp ------C-----------------SHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred ------C-----------------HHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 0 1234555555555554 677888888888888888788888877763
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.62 E-value=0.0096 Score=67.28 Aligned_cols=99 Identities=12% Similarity=0.031 Sum_probs=79.1
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~ 1424 (2096)
.....|...+.+..+.|.++.|...+.++.... .+.+....|.++...|+..+|+..++.+++..|
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~------------ 204 (258)
T 3uq3_A 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP------------ 204 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH------------
Confidence 356678999999999999999999999988765 356788899999999999999999999876321
Q ss_pred cccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 000134 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQ 1483 (2096)
Q Consensus 1425 ~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~ 1483 (2096)
..+.++..+|......|+ .++....|++++++.
T Consensus 205 ------------------------~~~~~~~~l~~~~~~~g~--~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 205 ------------------------NFVRAYIRKATAQIAVKE--YASALETLDAARTKD 237 (258)
T ss_dssp ------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHhC
Confidence 013456667776666664 778888999999988
No 35
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.62 E-value=0.011 Score=69.51 Aligned_cols=61 Identities=11% Similarity=0.003 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
...|...+.+..+.|.++.|...+.++.... .+.+....|.++...|+..+|+..++++++
T Consensus 236 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 236 EPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 5679999999999999999999999988764 467888999999999999999999998765
No 36
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.56 E-value=0.0038 Score=73.41 Aligned_cols=256 Identities=11% Similarity=-0.010 Sum_probs=154.7
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCC
Q 000134 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGR 1198 (2096)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~ 1198 (2096)
.+...+...|+|++|..+|+++++..|++......+-.|+...|+++....+.+......|.....+. ....+....|+
T Consensus 26 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-~la~~~~~~~~ 104 (327)
T 3cv0_A 26 EEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHA-ALAVSHTNEHN 104 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHTTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHH-HHHHHHHHcCC
Confidence 44556677888888888888888888888877777888888888888877776665554454322222 23455567777
Q ss_pred hhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHH-HH-
Q 000134 1199 WDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFI-VK- 1276 (2096)
Q Consensus 1199 Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l-~k- 1276 (2096)
|+.-.+++...-... +........+...+ ..... .+ .+ -.
T Consensus 105 ~~~A~~~~~~~~~~~------~~~~~~~~~~~~~~------------------------------~~~~~-~~-~~~~~~ 146 (327)
T 3cv0_A 105 ANAALASLRAWLLSQ------PQYEQLGSVNLQAD------------------------------VDIDD-LN-VQSEDF 146 (327)
T ss_dssp HHHHHHHHHHHHHTS------TTTTTC----------------------------------------------------C
T ss_pred HHHHHHHHHHHHHhC------CccHHHHHHHhHHH------------------------------HHHHH-HH-HHHHhH
Confidence 776555443321100 00000000000000 00000 00 00 00
Q ss_pred -hhhhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHH
Q 000134 1277 -LHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQY 1355 (2096)
Q Consensus 1277 -LH~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~ 1355 (2096)
+....+.+++...+ +.=+.. . ......|...
T Consensus 147 ~~~~~~~~~~A~~~~------------------------~~~~~~-------------------~-----~~~~~~~~~l 178 (327)
T 3cv0_A 147 FFAAPNEYRECRTLL------------------------HAALEM-------------------N-----PNDAQLHASL 178 (327)
T ss_dssp CTTSHHHHHHHHHHH------------------------HHHHHH-------------------S-----TTCHHHHHHH
T ss_pred HHHHcccHHHHHHHH------------------------HHHHhh-------------------C-----CCCHHHHHHH
Confidence 01111111111111 110000 0 1124578888
Q ss_pred HHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCC
Q 000134 1356 AKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLN 1433 (2096)
Q Consensus 1356 AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 1433 (2096)
+.+..+.|+++.|...+.++....+ +.+....|.++...|+..+|+..++++++..|.
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------------------- 238 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-------------------- 238 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------------------
Confidence 9999999999999999999877653 567888999999999999999999998763110
Q ss_pred CCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc------------hHHHHHHHHhhhHH
Q 000134 1434 PLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM------------WEKGYFYMAKYCDD 1499 (2096)
Q Consensus 1434 ~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~------------weK~~~~la~y~d~ 1499 (2096)
.+.++..+|......|+ .++..+.|+++++..|. ...+|+.+|..|.+
T Consensus 239 ----------------~~~~~~~l~~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 298 (327)
T 3cv0_A 239 ----------------YVRVMYNMAVSYSNMSQ--YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNV 298 (327)
T ss_dssp ----------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHH
T ss_pred ----------------CHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHh
Confidence 02345556665555554 78889999999999998 78888888887654
No 37
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.53 E-value=0.22 Score=65.28 Aligned_cols=461 Identities=13% Similarity=0.131 Sum_probs=234.6
Q ss_pred HHHHHHHhhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhc
Q 000134 148 LLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLF 227 (2096)
Q Consensus 148 ~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~ 227 (2096)
+..-+.++ ......+++-.+...+..+++..++...+ -+..+..-|.|++..+|-.|-+++..+.
T Consensus 50 ~~~~vi~l-~~s~~~~~Krl~yl~l~~~~~~~~e~~~l-----~~n~l~kdL~~~n~~ir~~AL~~L~~i~--------- 114 (591)
T 2vgl_B 50 LFPDVVNC-MQTDNLELKKLVYLYLMNYAKSQPDMAIM-----AVNSFVKDCEDPNPLIRALAVRTMGCIR--------- 114 (591)
T ss_dssp GHHHHHHT-TSSSCHHHHHHHHHHHHHHHHHSHHHHHT-----THHHHGGGSSSSSHHHHHHHHHHHHTCC---------
T ss_pred HHHHHHHH-hCCCCHHHHHHHHHHHHHHcccCchHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCC---------
Confidence 44445554 34455666666666776666543322111 1234455579999999999988887743
Q ss_pred cCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHH--HHHHHHHHhhCCCCcchHHHHHHHH
Q 000134 228 LDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFL--FLLILLVEQLDNPHVTVRMNASRLI 305 (2096)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~--~~l~~Li~~L~~~n~~v~~~A~~~i 305 (2096)
+..-.+.++..+.+.+. -+||.|+.+...+++.|.. ...|... -.+=.|.+.|..+|+.|+..|..-+
T Consensus 115 ------~~~~~~~l~~~l~~~L~-d~~~~VRk~A~~al~~i~~---~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL 184 (591)
T 2vgl_B 115 ------VDKITEYLCEPLRKCLK-DEDPYVRKTAAVCVAKLHD---INAQMVEDQGFLDSLRDLIADSNPMVVANAVAAL 184 (591)
T ss_dssp ------SGGGHHHHHHHHHHHSS-CSCHHHHHHHHHHHHHHHH---SSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHH
T ss_pred ------hHHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHHHh---hChhhcccccHHHHHHHHhCCCChhHHHHHHHHH
Confidence 11122445666777665 5689999999999999955 2345443 2345688889999999999999999
Q ss_pred HHHhhhhccc-ccccccchhhhhhhhhhHHHHHHhc-CchHHHHHHHHHHhCCChHHHHHhhcccccchhhhccccChhH
Q 000134 306 RKSCFFHLKG-GCELLVSKAVLICNELFDYLSVRLA-SRPIMVREFAEAAFGVETEELVKKMIPAVLPKLVVSQQDNDQA 383 (2096)
Q Consensus 306 ~~l~~~~~~~-~~~l~~~~~~~~~~~l~~~~~~~l~-~rp~~~~~~~e~llg~~~~~fL~~~~~~~LP~LVl~~~~~~~~ 383 (2096)
.++|...... .+.+ ....+..+++.+. ..|..-..+.+ +|.... | +.+...
T Consensus 185 ~~i~~~~~~~~~~~l--------~~~~~~~Ll~~l~~~~~~~q~~il~---------~l~~l~----~------~~~~~~ 237 (591)
T 2vgl_B 185 SEISESHPNSNLLDL--------NPQNINKLLTALNECTEWGQIFILD---------CLSNYN----P------KDDREA 237 (591)
T ss_dssp HHHTTSCCSCCSCCC--------HHHHHHHHHHHHHHCCHHHHHHHHH---------HHHTSC----C------CSHHHH
T ss_pred HHHHhhCCCccchhc--------cHHHHHHHHHcCCCCCchHHHHHHH---------HHHHhC----C------CChHHH
Confidence 9998765321 0111 1122333443332 11211111100 111110 1 111011
Q ss_pred HHHHHHHHHHcCCCchhHHhhhHHHHHHHHhccccHHHHHHHHHHHhhhc-----CCC-hHHHHHHhhHHHHHHHHHhhc
Q 000134 384 VNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERRLLSALEFYCIQT-----GSD-NQEIFAAALPALLDELICFVD 457 (2096)
Q Consensus 384 ~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~~~~~~~~~~l~~~~~~~-----~~~-~~~~~~~~~~~~l~eLl~~~~ 457 (2096)
...+..+.. ++...+..-..++...+.... ..+ .+.++....+.++ . +.
T Consensus 238 ~~~l~~l~~--------------------~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~-~----L~ 292 (591)
T 2vgl_B 238 QSICERVTP--------------------RLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLV-T----LL 292 (591)
T ss_dssp HHHHHHHTT--------------------CSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHH-H----HT
T ss_pred HHHHHHHHH--------------------HHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH-H----Hh
Confidence 111111111 111222333334444333322 111 2222333333333 2 22
Q ss_pred CCCchhHhhhhcchhHHHHHHhhhcc-CCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhcccccc
Q 000134 458 GGDSDEINERLNRVPRVIRKVSTVLT-GNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTT 536 (2096)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~~v~~ 536 (2096)
.++.+ .+. -++..+..+.. .++.+..++. .|- +.. .++...|++++.-+.. ++...
T Consensus 293 ~~d~~--vr~-----~aL~~l~~i~~~~p~~~~~~~~--------~~~-~~~-~d~~~Ir~~al~~L~~---l~~~~--- 349 (591)
T 2vgl_B 293 SGEPE--VQY-----VALRNINLIVQKRPEILKQEIK--------VFF-VKY-NDPIYVKLEKLDIMIR---LASQA--- 349 (591)
T ss_dssp TSCHH--HHH-----HHHHHHHHHHHHCCSTTTTCTT--------TTS-CCT-TSCHHHHHHHHHHHHH---TCCSS---
T ss_pred cCCcc--HHH-----HHHHHHHHHHHhChHHHHHHHH--------hhe-ecc-CChHHHHHHHHHHHHH---HCChh---
Confidence 23322 111 12333333222 2332222211 110 111 3457788888754443 33331
Q ss_pred chhhHHHHHHHHhcC--CCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhccccCCCCchhhHHHHHHHHHHHH
Q 000134 537 YVPKILVLLMHAINK--ESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDLV 614 (2096)
Q Consensus 537 ~~pqI~a~L~~aL~~--~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li 614 (2096)
-...|+.-|...+.. ++++..++.+-..+... ..+....++..++.++... .....+.+...+..|+
T Consensus 350 nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~--------~~~~~~~~v~~Ll~ll~~~---~~~v~~e~i~~l~~ii 418 (591)
T 2vgl_B 350 NIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIK--------VEQSAERCVSTLLDLIQTK---VNYVVQEAIVVIRDIF 418 (591)
T ss_dssp THHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------ChhHHHHHHHHHHHHHccc---chHHHHHHHHHHHHHH
Confidence 134455555555543 34555544333333322 2233455666677777522 2234566666777777
Q ss_pred HHhHH-------HHHhhcccCCCCCChhhhH-HHHHHHHHhcCC-CCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhh
Q 000134 615 LKNRA-------ILKQHIHEFPLLPSIAALT-EVNKAIQEARGP-MTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKL 685 (2096)
Q Consensus 615 ~~n~~-------~L~~~i~~lp~Lp~ip~l~-~v~~~l~~~r~~-~~l~~~l~~~~~~l~~en~~Vr~~aL~eL~~~L~~ 685 (2096)
.++.+ .|.+.+.+ .. .|+.. .+--.+-++... .+..+.++.|+++...|+..|+.++|+.+.++..+
T Consensus 419 ~~~p~~~~~~v~~L~~~l~~---~~-~~~~~~~~~wilGey~~~~~~~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~ 494 (591)
T 2vgl_B 419 RKYPNKYESIIATLCENLDS---LD-EPDARAAMIWIVGEYAERIDNADELLESFLEGFHDESTQVQLTLLTAIVKLFLK 494 (591)
T ss_dssp HHSCSSCCTTHHHHHHTTTT---CC-SHHHHHHHHHHHHTTCTTCTTHHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTT
T ss_pred HHCcchHHHHHHHHHHHHHh---cc-CHHHHHHHHHHHHcccccccCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhc
Confidence 66542 22222222 11 23221 122223344333 24678899999999999999999999999998765
Q ss_pred cHHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhcccCc
Q 000134 686 KSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALGA 741 (2096)
Q Consensus 686 ~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IGa 741 (2096)
..+ ....++..+|..|...+ .+.+++..|.+.++++..
T Consensus 495 ~p~---------------~~~~~i~~ll~~~~~d~---~d~evrdRA~~y~~ll~~ 532 (591)
T 2vgl_B 495 KPS---------------ETQELVQQVLSLATQDS---DNPDLRDRGYIYWRLLST 532 (591)
T ss_dssp CCS---------------TTHHHHHHHHHHHHTTC---CCHHHHHHHHHHHTTTTT
T ss_pred Cch---------------HHHHHHHHHHHHhhhcC---CChHHHHHHHHHHHHHCc
Confidence 421 12356677777765322 236899999999999965
No 38
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.51 E-value=0.0041 Score=73.14 Aligned_cols=62 Identities=15% Similarity=0.031 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhc
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLN 1410 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~ 1410 (2096)
...|...+.+..+.|+++.|...+.++.... .+.+....|.++...|+..+|+..+++++..
T Consensus 206 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 206 AQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM 269 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4678999999999999999999999987765 3567888999999999999999999998763
No 39
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=97.44 E-value=0.005 Score=74.47 Aligned_cols=256 Identities=12% Similarity=-0.015 Sum_probs=149.4
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCC
Q 000134 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGR 1198 (2096)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~ 1198 (2096)
.....+...|++++|..+|+++++..|++......+-.|+..+|+++..+...+......|+....+. ....+.+..|+
T Consensus 70 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~l~~~~~~~g~ 148 (365)
T 4eqf_A 70 EEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALM-ALAVSYTNTSH 148 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH-HHHHHHHcccc
Confidence 34556678888888888888888888888888888888888888888877777665554454332222 23345567777
Q ss_pred hhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHHHHhh
Q 000134 1199 WDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLH 1278 (2096)
Q Consensus 1199 Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~kLH 1278 (2096)
++.-.+++...-. +. .+.......+ . .....+.. .-.-+.
T Consensus 149 ~~~A~~~~~~al~------------------------~~-p~~~~~~~~~-------~-----~~~~~~~~---l~~~~~ 188 (365)
T 4eqf_A 149 QQDACEALKNWIK------------------------QN-PKYKYLVKNK-------K-----GSPGLTRR---MSKSPV 188 (365)
T ss_dssp HHHHHHHHHHHHH------------------------HC-HHHHCC----------------------------------
T ss_pred HHHHHHHHHHHHH------------------------hC-ccchHHHhhh-------c-----cchHHHHH---HHHHHh
Confidence 7665443322110 00 0000000000 0 00000000 000000
Q ss_pred hhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHHH
Q 000134 1279 LLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKL 1358 (2096)
Q Consensus 1279 ~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~Akl 1358 (2096)
...+.+++...+ +.=+.. .+.. .....|...+.+
T Consensus 189 ~~g~~~~A~~~~------------------------~~al~~-------------------~p~~---~~~~~~~~l~~~ 222 (365)
T 4eqf_A 189 DSSVLEGVKELY------------------------LEAAHQ-------------------NGDM---IDPDLQTGLGVL 222 (365)
T ss_dssp CCHHHHHHHHHH------------------------HHHHHH-------------------SCSS---CCHHHHHHHHHH
T ss_pred hhhhHHHHHHHH------------------------HHHHHh-------------------CcCc---cCHHHHHHHHHH
Confidence 111222222211 100000 0100 124568888899
Q ss_pred HHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCC
Q 000134 1359 CRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLP 1436 (2096)
Q Consensus 1359 ARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1436 (2096)
..+.|+++.|...+.++.... .+.+....+.++...|+..+|+..++++++..|.
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~----------------------- 279 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG----------------------- 279 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------------
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----------------------
Confidence 999999999999999887764 3467788899999999999999999988763110
Q ss_pred cccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccch------------HHHHHHHHhhhHH
Q 000134 1437 VLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMW------------EKGYFYMAKYCDD 1499 (2096)
Q Consensus 1437 ~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~w------------eK~~~~la~y~d~ 1499 (2096)
.+.++..+|.-....|+ .++.+..|++|+++.|+. ...|..+|..+..
T Consensus 280 -------------~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 339 (365)
T 4eqf_A 280 -------------FIRSRYNLGISCINLGA--YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSL 339 (365)
T ss_dssp -------------CHHHHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHH
T ss_pred -------------chHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHH
Confidence 13456666666655665 678888999999988762 4556666665543
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=97.43 E-value=0.013 Score=67.32 Aligned_cols=135 Identities=15% Similarity=0.062 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccccc
Q 000134 1350 NCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSL 1427 (2096)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~ 1427 (2096)
..|...+.+..+.|.++.|...+.++.... .+.+....+...+..++..+|+..++++++..|.
T Consensus 109 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-------------- 174 (272)
T 3u4t_A 109 DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN-------------- 174 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--------------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc--------------
Confidence 458888889999999999999999987764 3456777786777788999999999998763211
Q ss_pred CCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhc---cc-----hHHHHHHHHhhhH
Q 000134 1428 SLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQ-KEDVITLYSRVRELQ---PM-----WEKGYFYMAKYCD 1498 (2096)
Q Consensus 1428 ~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~-~~~i~~~Y~~a~~l~---~~-----weK~~~~la~y~d 1498 (2096)
...++..+|.-....+... .++.+..|.+++++. +. +..+|+.+|.+|.
T Consensus 175 ----------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (272)
T 3u4t_A 175 ----------------------IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232 (272)
T ss_dssp ----------------------CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHH
T ss_pred ----------------------chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 0234444555444444322 455777888888876 43 3467888888774
Q ss_pred HHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcc
Q 000134 1499 DVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2096)
Q Consensus 1499 ~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~ 1542 (2096)
.. | -...|+..|-+++...+++
T Consensus 233 ~~--------------~--------~~~~A~~~~~~al~~~p~~ 254 (272)
T 3u4t_A 233 IN--------------R--------DKVKADAAWKNILALDPTN 254 (272)
T ss_dssp HT--------------T--------CHHHHHHHHHHHHHHCTTC
T ss_pred Hc--------------C--------CHHHHHHHHHHHHhcCccH
Confidence 32 0 1236888888888776553
No 41
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.35 E-value=0.0022 Score=74.16 Aligned_cols=177 Identities=16% Similarity=0.210 Sum_probs=128.8
Q ss_pred CCCChHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHhc-CC--CcchhhhHHHHHHHHHhccCCCcchhhHHHHHH
Q 000134 509 HAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAIN-KE--SLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVF 585 (2096)
Q Consensus 509 ~~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL~-~~--~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~ 585 (2096)
++++..+|+.++..|+.+++-+++.......+|+..|...|. .+ ..+..++.|-..+...+. ..+.+++..++
T Consensus 25 ~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~----~~~~~~~~~il 100 (242)
T 2qk2_A 25 EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLA----KRFSNYASACV 100 (242)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHG----GGGHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHH
Confidence 346788899999999999987655455556889999999995 43 467799999999998885 36888889888
Q ss_pred HHhhhccccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCChhhhHHHHHHHHHhcCCCCHHHHHHHHHhhcc
Q 000134 586 AALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLN 665 (2096)
Q Consensus 586 ~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~~l~ 665 (2096)
..++..+. +....+++.+...+..++. ..++..-+..+...++
T Consensus 101 p~ll~~l~---d~~~~vr~~a~~aL~~~~~----------------------------------~~~~~~ll~~l~~~l~ 143 (242)
T 2qk2_A 101 PSLLEKFK---EKKPNVVTALREAIDAIYA----------------------------------STSLEAQQESIVESLS 143 (242)
T ss_dssp HHHHHGGG---CCCHHHHHHHHHHHHHHHT----------------------------------TSCHHHHHHHHHHHTT
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHHHHH----------------------------------cCCHHHHHHHHHHHHc
Confidence 88888775 3333456666666665533 1234455667788899
Q ss_pred CCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhcccC
Q 000134 666 HENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALG 740 (2096)
Q Consensus 666 ~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IG 740 (2096)
|.|+.||..++.-|...+.....+ .. ..+.+..++..|+.+..+.+ .+++..+.+|||.|+
T Consensus 144 ~~~~~vr~~~l~~l~~~l~~~~~~--------~~-~~~~l~~l~p~l~~~l~D~~-----~~VR~~A~~~l~~l~ 204 (242)
T 2qk2_A 144 NKNPSVKSETALFIARALTRTQPT--------AL-NKKLLKLLTTSLVKTLNEPD-----PTVRDSSAEALGTLI 204 (242)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCCGG--------GC-CHHHHHHHHHHHHHHHTSSC-----HHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHcCCC--------Cc-cHHHHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHHHH
Confidence 999999999999999887664211 00 11346677777777665432 589999999999966
No 42
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.31 E-value=0.073 Score=66.43 Aligned_cols=401 Identities=13% Similarity=0.106 Sum_probs=194.9
Q ss_pred HhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchh-hH-HHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhccc
Q 000134 198 LLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSN-EL-KLLDVIKLAFTAADDPLILETLLESTAELMMAVDVH 275 (2096)
Q Consensus 198 ~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~ 275 (2096)
.+.+++..+|..+...+..++... .+...... +. .++..+-+.+...+|+.++...+..++.|.......
T Consensus 28 ~l~s~~~~~r~~A~~~L~~l~~~~--------~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~ 99 (450)
T 2jdq_A 28 MIFSKSPEQQLSATQKFRKLLSKE--------PNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQ 99 (450)
T ss_dssp HHHSSCHHHHHHHHHHHHHHHHSS--------SSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHhcCC--------CCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 348999999999999999865210 00010111 11 466777776766668999999999999985421111
Q ss_pred chhH--HHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccchhhhhhhhhhHHHHHHhcC--chHHHHHHHH
Q 000134 276 SQHF--LFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLAS--RPIMVREFAE 351 (2096)
Q Consensus 276 ~e~~--~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~--rp~~~~~~~e 351 (2096)
...+ .-++=.|+..|.++++.+|..|..-+.+++...... +..-+...+.+.+++-+.. .+.+.+..+
T Consensus 100 ~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~-------~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~- 171 (450)
T 2jdq_A 100 TRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMC-------RDYVLDCNILPPLLQLFSKQNRLTMTRNAV- 171 (450)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH-------HHHHHHTTCHHHHHHHTTSCCCHHHHHHHH-
T ss_pred HHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHH-------HHHHHHCCCHHHHHHHhcCCCCHHHHHHHH-
Confidence 1111 124455888899999999999999999997643110 0000111223444444442 122222211
Q ss_pred HHhCCChHHHHHhhcccccchhhhccccChhHHHHHHHHHHHc-CCCchhHHhhhHHHHHHHHhccccHH---HHHHHHH
Q 000134 352 AAFGVETEELVKKMIPAVLPKLVVSQQDNDQAVNIINELAKCL-NTDMVPLIVTWIPKVLAFALHQADER---RLLSALE 427 (2096)
Q Consensus 352 ~llg~~~~~fL~~~~~~~LP~LVl~~~~~~~~~~~i~~ia~~~-~~~~~~l~~~~~~~Ila~ll~~~~~~---~~~~~l~ 427 (2096)
..+..|+... ...-..++..-+|. |..++...+++ .+..+|.
T Consensus 172 ---------------------------------~~L~~l~~~~~~~~~~~~~~~~l~~-L~~~l~~~~~~v~~~a~~~L~ 217 (450)
T 2jdq_A 172 ---------------------------------WALSNLCRGKSPPPEFAKVSPCLNV-LSWLLFVSDTDVLADACWALS 217 (450)
T ss_dssp ---------------------------------HHHHHHHCCSSSCCCGGGTGGGHHH-HHHHTTCCCHHHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHhCCCCCCCCHHHHHHHHHH-HHHHHccCCHHHHHHHHHHHH
Confidence 1122221110 00001111111222 22222222322 2333444
Q ss_pred HHhhhcCCChHHHHH-HhhHHHHHHHHHhhcCCCchhHhhhhcchhHHHHHHhhhccCCCChhh-hhHHHHHHHHHHhhh
Q 000134 428 FYCIQTGSDNQEIFA-AALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPG-FLRNHFVGLLNSIDR 505 (2096)
Q Consensus 428 ~~~~~~~~~~~~~~~-~~~~~~l~eLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-fl~~~~LGil~~~~~ 505 (2096)
.+........+.+.. ..+|.++ + .+...+... + ..++..++.+..+.+.... ++.. |++..+-.
T Consensus 218 ~l~~~~~~~~~~~~~~~~i~~L~-~---ll~~~~~~v--~-----~~a~~~L~~l~~~~~~~~~~~~~~---~~l~~L~~ 283 (450)
T 2jdq_A 218 YLSDGPNDKIQAVIDAGVCRRLV-E---LLMHNDYKV--V-----SPALRAVGNIVTGDDIQTQVILNC---SALQSLLH 283 (450)
T ss_dssp HHTSSSHHHHHHHHHTTTHHHHH-H---HTTCSCHHH--H-----HHHHHHHHHHTTSCHHHHHHHHTT---THHHHHHH
T ss_pred HHHCCCcHHHHHHHHcCcHHHHH-H---HHCCCchhH--H-----HHHHHHHHHHhhCChHHHHHHHHC---ccHHHHHH
Confidence 443211101112222 2334444 2 333333211 1 2233334444344332221 1221 55555543
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHhcccc-----ccchhhHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCCcchhhH
Q 000134 506 KMLHAEDLSLQKQALKRIEILIEMIGSHL-----TTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHV 580 (2096)
Q Consensus 506 ~l~~~~~~~~k~~~l~sl~~li~l~g~~v-----~~~~pqI~a~L~~aL~~~~L~~~~l~~W~~fv~~L~~~~~~~l~~l 580 (2096)
.+ ..++...|+.++.+|+.+..-....+ ..+.|.++..|.+. .++++..++.+-..+...- +++.+..+
T Consensus 284 ll-~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~--~~~v~~~a~~~L~~l~~~~---~~~~~~~l 357 (450)
T 2jdq_A 284 LL-SSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA--EFRTRKEAAWAITNATSGG---SAEQIKYL 357 (450)
T ss_dssp HT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHC---CHHHHHHH
T ss_pred HH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHcCC---CHHHHHHH
Confidence 33 34467788899999988764111111 24566666666653 4556666666655555532 23344444
Q ss_pred HH-HHHHHhhhccccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCChhhhHHHHHHHHHhcCCCCHHHHHHH
Q 000134 581 IS-QVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLA 659 (2096)
Q Consensus 581 l~-~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~ 659 (2096)
++ .++..|+.+++.. ....+..+...|..|+......-.. .. ..++ .+...+.+..+ .+.|
T Consensus 358 ~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~~l~~~~~~~~~~--~~----~~~~---~~~~~l~~~g~----~~~l-- 419 (450)
T 2jdq_A 358 VELGCIKPLCDLLTVM---DSKIVQVALNGLENILRLGEQEAKR--NG----TGIN---PYCALIEEAYG----LDKI-- 419 (450)
T ss_dssp HHHTCHHHHHHGGGSS---CHHHHHHHHHHHHHHHHHHHHHHHH--SC----SCCC---HHHHHHHHHHC----HHHH--
T ss_pred HHCCCHHHHHHHhcCC---CHHHHHHHHHHHHHHHHhchhhhhc--cc----cchh---HHHHHHHHcCc----HHHH--
Confidence 43 3566666766532 3356788888888887654322110 00 0111 12223333322 1222
Q ss_pred HHhhccCCChhHHHHHHHHHHHHHhhcH
Q 000134 660 AVDGLNHENLNVRYMVVCELSKLLKLKS 687 (2096)
Q Consensus 660 ~~~~l~~en~~Vr~~aL~eL~~~L~~~~ 687 (2096)
..-..|+|..|+..|+.-|..++....
T Consensus 420 -~~l~~~~~~~v~~~a~~~l~~~~~~~~ 446 (450)
T 2jdq_A 420 -EFLQSHENQEIYQKAFDLIEHYFGTED 446 (450)
T ss_dssp -HHHHCHHHHHHHHHHHHHHHHHHCCC-
T ss_pred -HHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence 333567788999999998888875443
No 43
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=97.25 E-value=0.0049 Score=69.25 Aligned_cols=109 Identities=10% Similarity=0.054 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccC
Q 000134 1351 CWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLS 1428 (2096)
Q Consensus 1351 ~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~ 1428 (2096)
.|...+.+..+.|.++.|...+.++.... .+.+....|.++...|+..+|+..++++++..+
T Consensus 127 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------------- 190 (243)
T 2q7f_A 127 LFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDP---------------- 190 (243)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCT----------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----------------
Confidence 46777888888899999988888887664 356777888999999999999999988765211
Q ss_pred CCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhh
Q 000134 1429 LVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497 (2096)
Q Consensus 1429 ~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~ 1497 (2096)
..+.++..+|......|+ .++..+.|+++.++.|....+++.++...
T Consensus 191 --------------------~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 191 --------------------GHADAFYNAGVTYAYKEN--REKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp --------------------TCHHHHHHHHHHHHHTTC--TTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred --------------------ccHHHHHHHHHHHHHccC--HHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 013356666766666665 56778889999999998888888776654
No 44
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.23 E-value=0.032 Score=68.33 Aligned_cols=109 Identities=11% Similarity=0.024 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC----C----ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccc
Q 000134 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASG----A----PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGST 1419 (2096)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~all~a~~~~----~----~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~ 1419 (2096)
.+.+|...+.+..+.|+++.|...+.++.... . ..+....|.+++..|+..+|+..+++++...+
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------- 334 (411)
T 4a1s_A 262 ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ------- 334 (411)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-------
Confidence 45678999999999999999999888776542 2 34677889999999999999999999875210
Q ss_pred ccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHH
Q 000134 1420 AISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEK 1488 (2096)
Q Consensus 1420 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK 1488 (2096)
........+.++..+|+.....|+ .++....|++|.++.+....
T Consensus 335 -----------------------~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~ 378 (411)
T 4a1s_A 335 -----------------------ELGDRIGEARACWSLGNAHSAIGG--HERALKYAEQHLQLAXXXXX 378 (411)
T ss_dssp -----------------------HHTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCCHHHH
T ss_pred -----------------------HCCChHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHhhccc
Confidence 001123457788888988877775 78899999999999886643
No 45
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.21 E-value=0.052 Score=65.73 Aligned_cols=122 Identities=9% Similarity=0.036 Sum_probs=89.9
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CC----ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccc
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQAS----GA----PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGS 1418 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~----~~----~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~ 1418 (2096)
..+.+|...+.+..+.|.++.|...+.++... +. ..+....|.++...|+..+|+..++++++..+
T Consensus 225 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~------ 298 (406)
T 3sf4_A 225 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ------ 298 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH------
Confidence 44668899999999999999999988887644 22 34667889999999999999999999875210
Q ss_pred cccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccch------HHHHHH
Q 000134 1419 TAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMW------EKGYFY 1492 (2096)
Q Consensus 1419 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~w------eK~~~~ 1492 (2096)
........+.++..+|......|+ .++..+.|++|.++.+.. ..++..
T Consensus 299 ------------------------~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 352 (406)
T 3sf4_A 299 ------------------------ELNDRIGEGRACWSLGNAYTALGN--HDQAMHFAEKHLEISREVGDKSGELTARLN 352 (406)
T ss_dssp ------------------------HTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------------------------hcCCcHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhcCCcchhHHHHH
Confidence 000123446778888888777775 788899999998885543 456667
Q ss_pred HHhhhHHH
Q 000134 1493 MAKYCDDV 1500 (2096)
Q Consensus 1493 la~y~d~l 1500 (2096)
+|..|..+
T Consensus 353 l~~~~~~~ 360 (406)
T 3sf4_A 353 LSDLQMVL 360 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77666443
No 46
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.19 E-value=0.052 Score=69.96 Aligned_cols=400 Identities=11% Similarity=0.082 Sum_probs=194.9
Q ss_pred hcccHHHHHHHHHHHhHhhhh---hhhhhhccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccc
Q 000134 200 LNKRKAIRDAFCTQIGYFLQD---TVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHS 276 (2096)
Q Consensus 200 ~~~~r~vR~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~ 276 (2096)
.+++..+|..++..+..++.. +-...+. ...++..+.+.+...+|+.+++..+.+++.|........
T Consensus 97 ~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~----------~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 97 NSDDMQEQLSATVKFRQILSREHRPPIDVVI----------QAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp SCSSHHHHHHHHHHHHHHTCCSSSCSHHHHH----------HTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCCccHHHHH----------HCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 788899999999999887621 1111111 123455666666655689999999999999844211111
Q ss_pred hhH--HHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccchhhhhhhhhhHHHHHHhcCc-hHHHHHHHHHH
Q 000134 277 QHF--LFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASR-PIMVREFAEAA 353 (2096)
Q Consensus 277 e~~--~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~r-p~~~~~~~e~l 353 (2096)
..+ .-++-.|+..|.++++-++..|..-|.++|...... +..-+.....+.++.-+... +.+.+..
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~-------~~~~~~~~~l~~L~~ll~~~~~~v~~~a---- 235 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY-------RDYVLQCNAMEPILGLFNSNKPSLIRTA---- 235 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHH-------HHHHHHTTCHHHHHHGGGSCCHHHHHHH----
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccc-------hHHHHHcCcHHHHHHHhccCCHHHHHHH----
Confidence 111 112445777778899999999999999997542110 00000111223333333321 1111111
Q ss_pred hCCChHHHHHhhcccccchhhhccccChhHHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhccccHHH---HHHHHHHHh
Q 000134 354 FGVETEELVKKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERR---LLSALEFYC 430 (2096)
Q Consensus 354 lg~~~~~fL~~~~~~~LP~LVl~~~~~~~~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~~~~~~---~~~~l~~~~ 430 (2096)
...|..|+...+..............|..++...+++. +..+|..+.
T Consensus 236 ------------------------------~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~ 285 (530)
T 1wa5_B 236 ------------------------------TWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS 285 (530)
T ss_dssp ------------------------------HHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred ------------------------------HHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 12222222211011112222333333444444444333 334444443
Q ss_pred hhcCCChHHHHH-HhhHHHHHHHHHhhcCCCchhHhhhhcchhHHHHHHhhhccCCCChh-hhhHHHHHHHHHHhhhhhc
Q 000134 431 IQTGSDNQEIFA-AALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLP-GFLRNHFVGLLNSIDRKML 508 (2096)
Q Consensus 431 ~~~~~~~~~~~~-~~~~~~l~eLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~fl~~~~LGil~~~~~~l~ 508 (2096)
.......+.++. ..+|.++ + .+..++... + ..++..++.+..+.+... .++.. |++..+-..+
T Consensus 286 ~~~~~~~~~~~~~~~v~~Lv-~---lL~~~~~~v--~-----~~a~~~L~~l~~~~~~~~~~~~~~---~~l~~L~~lL- 350 (530)
T 1wa5_B 286 DGPQEAIQAVIDVRIPKRLV-E---LLSHESTLV--Q-----TPALRAVGNIVTGNDLQTQVVINA---GVLPALRLLL- 350 (530)
T ss_dssp SSCHHHHHHHHHTTCHHHHH-H---GGGCSCHHH--H-----HHHHHHHHHHTTSCHHHHHHHHHT---THHHHHHHHT-
T ss_pred CCCHHHHHHHHhcCcHHHHH-H---HHCCCChhh--H-----HHHHHHHHHHHcCCHHHHHHHHHc---chHHHHHHHH-
Confidence 221111122232 2233333 2 344433221 1 223444444444433222 22322 4444444333
Q ss_pred CCCChHHHHHHHHHHHHHHHHhcccc-----ccchhhHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCCcchhhHHH-
Q 000134 509 HAEDLSLQKQALKRIEILIEMIGSHL-----TTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVIS- 582 (2096)
Q Consensus 509 ~~~~~~~k~~~l~sl~~li~l~g~~v-----~~~~pqI~a~L~~aL~~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~- 582 (2096)
...+...++.++.+|+.+..-...++ ..+.|.++..|.+ ..++++..++.+-..+...-.. .|+....++.
T Consensus 351 ~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~aL~~l~~~~~~-~~~~~~~l~~~ 427 (530)
T 1wa5_B 351 SSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV--AEYKTKKEACWAISNASSGGLQ-RPDIIRYLVSQ 427 (530)
T ss_dssp TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHTTT-CTHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc--CCHHHHHHHHHHHHHHHhcCCC-cHHHHHHHHHC
Confidence 34467788999999988764111122 2466777777764 2456666766666556554210 0123333332
Q ss_pred HHHHHhhhccccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCChhhhHHHHHHHHHhcCCCCHHHHHHHHHh
Q 000134 583 QVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVD 662 (2096)
Q Consensus 583 ~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~ 662 (2096)
.++..|+.++.. .....+..+...|..|+............ . ...+...+.+.. . +..+..
T Consensus 428 ~~l~~L~~ll~~---~~~~v~~~al~aL~~l~~~~~~~~~~~~~------~---~~~~~~~l~~~g----~---~~~L~~ 488 (530)
T 1wa5_B 428 GCIKPLCDLLEI---ADNRIIEVTLDALENILKMGEADKEARGL------N---INENADFIEKAG----G---MEKIFN 488 (530)
T ss_dssp TCHHHHHHHTTT---CCHHHHHHHHHHHHHHHHHHHHHHHHHTC------S---SCHHHHHHHHTT----H---HHHHHG
T ss_pred CCHHHHHHHHhC---CCHHHHHHHHHHHHHHHHhhhhhhhcccc------c---ccHHHHHHHHcC----c---HHHHHH
Confidence 244555555542 23456788888888887654432211000 0 111222222211 1 233344
Q ss_pred hccCCChhHHHHHHHHHHHHHhhcH
Q 000134 663 GLNHENLNVRYMVVCELSKLLKLKS 687 (2096)
Q Consensus 663 ~l~~en~~Vr~~aL~eL~~~L~~~~ 687 (2096)
-++|+|..|+..|..-|..++....
T Consensus 489 L~~~~~~~v~~~a~~il~~~~~~~~ 513 (530)
T 1wa5_B 489 CQQNENDKIYEKAYKIIETYFGEEE 513 (530)
T ss_dssp GGGCSCHHHHHHHHHHHHHHSSSCC
T ss_pred HHcCCCHHHHHHHHHHHHHHCCccc
Confidence 5678999999999999988886543
No 47
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=97.19 E-value=0.02 Score=69.18 Aligned_cols=240 Identities=12% Similarity=0.089 Sum_probs=140.3
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhccCChhHHHH
Q 000134 1043 KVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELL 1122 (2096)
Q Consensus 1043 ~~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~~sl~~qil 1122 (2096)
...++....+-|.|..|+.+++..+... | +.++....+ ..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-----p-----------------------~~~~~~~~l------------g~ 107 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD-----P-----------------------GDAEAWQFL------------GI 107 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-----T-----------------------TCHHHHHHH------------HH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-----c-----------------------CCHHHHHHH------------HH
Confidence 5578899999999999999999987642 1 111222222 23
Q ss_pred HhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChhhH
Q 000134 1123 SNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLM 1202 (2096)
Q Consensus 1123 ~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd~l 1202 (2096)
.|...|++++|..+|+++++..|++......+-.|+..+|+++..+.+.+......|+....+...+.
T Consensus 108 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~------------ 175 (365)
T 4eqf_A 108 TQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKG------------ 175 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC------------------
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhcc------------
Confidence 45678999999999999999999999988899999999999998887776655544433221111100
Q ss_pred HHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHHHH-hhhhh
Q 000134 1203 DEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVK-LHLLQ 1281 (2096)
Q Consensus 1203 ~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~k-LH~L~ 1281 (2096)
.......+|.++ ...++..+..+.++++... ...... ...+-.+-. +....
T Consensus 176 -------------------~~~~~~~l~~~~--~~~g~~~~A~~~~~~al~~-----~p~~~~--~~~~~~l~~~~~~~g 227 (365)
T 4eqf_A 176 -------------------SPGLTRRMSKSP--VDSSVLEGVKELYLEAAHQ-----NGDMID--PDLQTGLGVLFHLSG 227 (365)
T ss_dssp ----------------------------------CCHHHHHHHHHHHHHHHH-----SCSSCC--HHHHHHHHHHHHHHT
T ss_pred -------------------chHHHHHHHHHH--hhhhhHHHHHHHHHHHHHh-----CcCccC--HHHHHHHHHHHHHCC
Confidence 000111122121 1122222222222222111 000000 001111110 11111
Q ss_pred HHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHHHHHH
Q 000134 1282 ELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRL 1361 (2096)
Q Consensus 1282 ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~AklARK 1361 (2096)
+.+++...+ +.=+.. . +.....|...+.+..+
T Consensus 228 ~~~~A~~~~------------------------~~al~~-------------------~-----p~~~~~~~~l~~~~~~ 259 (365)
T 4eqf_A 228 EFNRAIDAF------------------------NAALTV-------------------R-----PEDYSLWNRLGATLAN 259 (365)
T ss_dssp CHHHHHHHH------------------------HHHHHH-------------------C-----TTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHH------------------------HHHHHh-------------------C-----CCCHHHHHHHHHHHHH
Confidence 222222211 100000 0 1235679999999999
Q ss_pred cCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhc
Q 000134 1362 AGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLN 1410 (2096)
Q Consensus 1362 ag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~ 1410 (2096)
.|+++.|...+.++....+ +.+....+.++...|+..+|+..++++++-
T Consensus 260 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 260 GDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999987753 567888999999999999999999999863
No 48
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.12 E-value=0.18 Score=64.88 Aligned_cols=399 Identities=15% Similarity=0.100 Sum_probs=196.6
Q ss_pred hhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccch--hhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccc
Q 000134 199 LLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRS--NELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHS 276 (2096)
Q Consensus 199 ~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~ 276 (2096)
|.+++..+|..++..+..++ ++....... .....+..+-+.+...+++.+++..+.+++.|+.......
T Consensus 83 L~s~~~~~~~~A~~~L~~l~---------s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 83 VYSDDNNLQLEATTQFRKLL---------SIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp HTSSCHHHHHHHHHHHHHHH---------TCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHh---------cCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 38889999999999998875 211100000 1123455666666665669999999999999954222122
Q ss_pred hhHHH--HHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccchhhhhhhhhhHHHHHHhcC--chHHHHHHHHH
Q 000134 277 QHFLF--LLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLAS--RPIMVREFAEA 352 (2096)
Q Consensus 277 e~~~~--~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~--rp~~~~~~~e~ 352 (2096)
..+.- ++-.|+..|.++++-++..|..-+.++|...... +...+.....+.+++-|.. .|.+.+..|
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~-------~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~-- 224 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKC-------RDLVLANGALLPLLAQLNEHTKLSMLRNAT-- 224 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHH-------HHHHHHTTCHHHHHHTCCTTCCHHHHHHHH--
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhh-------HHHHHHCCcHHHHHHHHhcCCCHHHHHHHH--
Confidence 22211 4555889999999999999999999997543110 0000001122333333311 222222222
Q ss_pred HhCCChHHHHHhhcccccchhhhccccChhHHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhccccHHHH---HHHHHHH
Q 000134 353 AFGVETEELVKKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERRL---LSALEFY 429 (2096)
Q Consensus 353 llg~~~~~fL~~~~~~~LP~LVl~~~~~~~~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~~~~~~~---~~~l~~~ 429 (2096)
.+|..++.... .............|..++...+++.. ..+|..+
T Consensus 225 --------------------------------~~L~~L~~~~~-~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l 271 (528)
T 4b8j_A 225 --------------------------------WTLSNFCRGKP-QPSFEQTRPALPALARLIHSNDEEVLTDACWALSYL 271 (528)
T ss_dssp --------------------------------HHHHHHHCSSS-CCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred --------------------------------HHHHHHHcCCC-CCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 12222221100 00111112222333334444444333 3344444
Q ss_pred hhhcCCChHHHHH-HhhHHHHHHHHHhhcCCCchhHhhhhcchhHHHHHHhhhccCCCChh-hhhHHHHHHHHHHhhhhh
Q 000134 430 CIQTGSDNQEIFA-AALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLP-GFLRNHFVGLLNSIDRKM 507 (2096)
Q Consensus 430 ~~~~~~~~~~~~~-~~~~~~l~eLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~fl~~~~LGil~~~~~~l 507 (2096)
........+.++. ..+|.++ + .+..++... ...++..++.+..+.+... .++.. |++..+-..+
T Consensus 272 ~~~~~~~~~~~~~~g~v~~Lv-~---lL~~~~~~v-------~~~a~~~L~nl~~~~~~~~~~~~~~---~~l~~L~~lL 337 (528)
T 4b8j_A 272 SDGTNDKIQAVIEAGVCPRLV-E---LLLHPSPSV-------LIPALRTVGNIVTGDDAQTQCIIDH---QALPCLLSLL 337 (528)
T ss_dssp TSSCHHHHHHHHHTTCHHHHH-H---HTTCSCHHH-------HHHHHHHHHHHTTSCHHHHHHHHTT---THHHHHHHHH
T ss_pred HcCCHHHHHHHHHcCHHHHHH-H---HHcCCChhH-------HHHHHHHHHHHHcCCHHHHHHHHHh---hhHHHHHHHH
Confidence 3221111112222 2233333 2 344443221 1234444454544443222 22222 4444443333
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhcccc-----ccchhhHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCCcchhhHHH
Q 000134 508 LHAEDLSLQKQALKRIEILIEMIGSHL-----TTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVIS 582 (2096)
Q Consensus 508 ~~~~~~~~k~~~l~sl~~li~l~g~~v-----~~~~pqI~a~L~~aL~~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~ 582 (2096)
.++.+...++.+..+|+.|..--...+ ..+.|.++..|.+. .++++..++.+...+...- +++....++.
T Consensus 338 ~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~aL~nl~~~~---~~~~~~~l~~ 412 (528)
T 4b8j_A 338 TQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA--EFDIKKEAAWAISNATSGG---SHDQIKYLVS 412 (528)
T ss_dssp HSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHS---CHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHcCC---CHHHHHHHHH
Confidence 333267788999999988864111111 14567777777664 5567777776666665541 1233333332
Q ss_pred -HHHHHhhhccccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCChhhhHHHHHHHHHhcCCCCHHHHHHHHH
Q 000134 583 -QVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAV 661 (2096)
Q Consensus 583 -~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~ 661 (2096)
.++..|+.++... ....+..+...|..|+......-. .... +. ..+...+.+..+ +..+.
T Consensus 413 ~~~i~~L~~lL~~~---d~~v~~~al~~L~~l~~~~~~~~~-~~~~----~~----~~~~~~i~~~~~-------~~~l~ 473 (528)
T 4b8j_A 413 EGCIKPLCDLLICP---DIRIVTVCLEGLENILKVGETDKT-LAAG----DV----NVFSQMIDEAEG-------LEKIE 473 (528)
T ss_dssp TTCHHHHHHGGGCS---CHHHHHHHHHHHHHHHHHHHHHHH-HHTC----SC----CHHHHHHHHTTH-------HHHHH
T ss_pred CCCHHHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHhhh-cccc----cc----cHHHHHHHHCCc-------HHHHH
Confidence 3555666666532 235677888888888765433211 1100 11 112223332221 22333
Q ss_pred hhccCCChhHHHHHHHHHHHHHhhc
Q 000134 662 DGLNHENLNVRYMVVCELSKLLKLK 686 (2096)
Q Consensus 662 ~~l~~en~~Vr~~aL~eL~~~L~~~ 686 (2096)
+-..|+|..|+..|..-|..++...
T Consensus 474 ~L~~~~~~~v~~~a~~il~~~~~~e 498 (528)
T 4b8j_A 474 NLQSHDNNEIYEKAVKILEAYWMDE 498 (528)
T ss_dssp HGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 4467899999999998888887653
No 49
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.08 E-value=0.04 Score=66.12 Aligned_cols=62 Identities=19% Similarity=0.056 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--C-----------ChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASG--A-----------PNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~all~a~~~~--~-----------~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
....|...+.+..+.|.++.|...+.++.... . +.+....+..+...|+.++|....+..+.
T Consensus 284 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 284 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 35678899999999999999999988876542 2 45677888999999999999888776554
No 50
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.00 E-value=0.066 Score=62.40 Aligned_cols=107 Identities=9% Similarity=0.057 Sum_probs=77.9
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CC----ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccc
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQAS----GA----PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGS 1418 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~----~~----~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~ 1418 (2096)
..+.+|...+.+..+.|+++.|...+.++... +. ..+....|.++...|+..+|+..+++++...+
T Consensus 221 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~------ 294 (338)
T 3ro2_A 221 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ------ 294 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH------
Confidence 44668899999999999999999888877543 22 34667788999999999999999998875210
Q ss_pred cccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Q 000134 1419 TAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM 1485 (2096)
Q Consensus 1419 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~ 1485 (2096)
........+.++..+|+.....|+ .++....|+++.++.++
T Consensus 295 ------------------------~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 295 ------------------------ELKDRIGEGRACWSLGNAYTALGN--HDQAMHFAEKHLEISRE 335 (338)
T ss_dssp ------------------------HHTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHC---
T ss_pred ------------------------hcCCcHHHHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHHHHh
Confidence 001123446678888888777775 77888888888887664
No 51
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=96.99 E-value=0.055 Score=67.65 Aligned_cols=147 Identities=12% Similarity=0.079 Sum_probs=91.4
Q ss_pred HHHHhhccc-CccchhhHHHHHHHHHHccCCchh-----------hhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhh
Q 000134 151 IYFEFLYDE-SSEEVQLSCVRVIRRILVHGTRDV-----------LLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFL 218 (2096)
Q Consensus 151 ~~~~~l~~~-~~~~v~~~~~~~l~~il~h~~~~~-----------~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~ 218 (2096)
.+..+|-+. .+.+|+-++...|++.+++...+. .-..+..-...|-.++.+++..| .++|..+..+.
T Consensus 39 ~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia 117 (462)
T 1ibr_B 39 ELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIA 117 (462)
T ss_dssp HHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHH
Confidence 344555554 467899898899999987653111 00111112222333447777777 77888887764
Q ss_pred hhhhhhhhccCcccccchhhHHHHHHHHHHhhhcC-ChhHHHHHHHHHHHHHhhhc--ccchhHHHHHHHHHHhhCCC--
Q 000134 219 QDTVLSSLFLDENASSRSNELKLLDVIKLAFTAAD-DPLILETLLESTAELMMAVD--VHSQHFLFLLILLVEQLDNP-- 293 (2096)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~i~eTll~~~~~i~~~~~--~~~e~~~~~l~~Li~~L~~~-- 293 (2096)
... +.. ..+ ..++..+...+...+ |+.+++..+.+++.+++... .-...+...+-.|+..|.++
T Consensus 118 ~~~-----~~~---~~w---~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~ 186 (462)
T 1ibr_B 118 CAE-----IPV---NQW---PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEP 186 (462)
T ss_dssp HHH-----GGG---TCC---TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCC
T ss_pred HHh-----ccc---ccc---HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCC
Confidence 211 110 112 346666666666544 88999999999999976431 11233344555688888888
Q ss_pred CcchHHHHHHHHHHHh
Q 000134 294 HVTVRMNASRLIRKSC 309 (2096)
Q Consensus 294 n~~v~~~A~~~i~~l~ 309 (2096)
++.||..|..-+.++.
T Consensus 187 ~~~vr~~a~~~l~~~~ 202 (462)
T 1ibr_B 187 SNNVKLAATNALLNSL 202 (462)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHH
Confidence 7899999988887764
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=96.93 E-value=0.071 Score=60.34 Aligned_cols=104 Identities=15% Similarity=0.069 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~ 1426 (2096)
...|...+.+..+.|+++.|...+.++.... .+.+....|.++...|+..+|+..++++++..+.
T Consensus 141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~------------- 207 (252)
T 2ho1_A 141 SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ------------- 207 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCC-------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-------------
Confidence 3456677777788888888888887776654 3456777888888888888888888877642110
Q ss_pred cCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHH
Q 000134 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGY 1490 (2096)
Q Consensus 1427 ~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~ 1490 (2096)
...++..++......| +.++..+.|+++.+..|.-...+
T Consensus 208 -----------------------~~~~~~~~~~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 208 -----------------------NARSLLLGIRLAKVFE--DRDTAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp -----------------------CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTSHHHH
T ss_pred -----------------------cHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHHCCCCHHHH
Confidence 0223444444444444 36777777888888777654443
No 53
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=96.88 E-value=0.22 Score=62.19 Aligned_cols=189 Identities=12% Similarity=0.117 Sum_probs=112.3
Q ss_pred CCCChHHHHHHHHHHHHHHHHhccccccchh-hHHHHHHHHhc--CCCcchhhhHHHHHHHHHhc------c--------
Q 000134 509 HAEDLSLQKQALKRIEILIEMIGSHLTTYVP-KILVLLMHAIN--KESLQCEGLSVLHFFIEQLS------R-------- 571 (2096)
Q Consensus 509 ~~~~~~~k~~~l~sl~~li~l~g~~v~~~~p-qI~a~L~~aL~--~~~L~~~~l~~W~~fv~~L~------~-------- 571 (2096)
...+...|+.++..++.+++..+..+..+.+ .|+..+...+. .++++..++..|..++.... +
T Consensus 227 ~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 306 (462)
T 1ibr_B 227 QCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRP 306 (462)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCC
Confidence 4456778888999999999988777777777 77776666664 45688999999999887641 0
Q ss_pred ---CCCcchhhHHHHHHHHhhhccccCCC----CchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCChhhhHHHHHHH
Q 000134 572 ---VSPSSTKHVISQVFAALIPFLERDKD----NPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAI 644 (2096)
Q Consensus 572 ---~~~~~l~~ll~~i~~~lip~~~~~~~----~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~l~~v~~~l 644 (2096)
.....+++.+..++..++..+...++ .....+..+...|..|....
T Consensus 307 ~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~--------------------------- 359 (462)
T 1ibr_B 307 PEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC--------------------------- 359 (462)
T ss_dssp SSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHT---------------------------
T ss_pred ccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhc---------------------------
Confidence 01112334445555555554432110 01122444555554443221
Q ss_pred HHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCC-chhHHHHHHHHHHHhhhhcccc
Q 000134 645 QEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSD-LDVLSTLISSLLRGCAEESRTV 723 (2096)
Q Consensus 645 ~~~r~~~~l~~~l~~~~~~l~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~-~~vi~~Lv~sLL~~c~~~~~t~ 723 (2096)
+..-+..-+..+...+++.+..+|.-|+.-|..+... ..+.. .+.+..++..|+.+..+.
T Consensus 360 ----~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~-----------~~~~~~~~~l~~~~~~l~~~l~d~---- 420 (462)
T 1ibr_B 360 ----EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEG-----------PEPSQLKPLVIQAMPTLIELMKDP---- 420 (462)
T ss_dssp ----TTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS-----------SCTTTTCTTTTTHHHHHHHGGGCS----
T ss_pred ----cHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC-----------CcHHHHHHHHHHHHHHHHHHhcCC----
Confidence 1111112233445566678888999888887766532 11100 134456777777766543
Q ss_pred chhhHHHHHHHhhcccCccCc
Q 000134 724 VGQKLKLVCADCLGALGAVDP 744 (2096)
Q Consensus 724 ~~~~I~~lca~CLG~IGalDp 744 (2096)
...++..|+.|||.++..-+
T Consensus 421 -~~~Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 421 -SVVVRDTAAWTVGRICELLP 440 (462)
T ss_dssp -CHHHHHHHHHHHHHHHHHGG
T ss_pred -CHHHHHHHHHHHHHHHHhcc
Confidence 25899999999999986543
No 54
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.042 Score=61.94 Aligned_cols=61 Identities=11% Similarity=0.023 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
...|...+.+..+.|.++.|...+.++....+ +.+....|.+++..|+..+|+..++++++
T Consensus 173 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 173 ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45788899999999999999999999887653 46788899999999999999999999876
No 55
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.81 E-value=0.51 Score=66.21 Aligned_cols=259 Identities=12% Similarity=0.075 Sum_probs=156.9
Q ss_pred CCCHHHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhccCChh-
Q 000134 1040 AIPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQ- 1118 (2096)
Q Consensus 1040 ~Ip~~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~~sl~- 1118 (2096)
.....-+|..+..-+.|+-|...+|..-+ ....+..+|.+++..|.+.-+......+.+-
T Consensus 1049 ~~d~~eIA~Iai~lglyEEAf~IYkKa~~-------------------~~~A~~VLie~i~nldrAiE~Aervn~p~vWs 1109 (1630)
T 1xi4_A 1049 NYDAPDIANIAISNELFEEAFAIFRKFDV-------------------NTSAVQVLIEHIGNLDRAYEFAERCNEPAVWS 1109 (1630)
T ss_pred hccHHHHHHHHHhCCCHHHHHHHHHHcCC-------------------HHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHH
Confidence 34466799999999999999999987521 0111222233444444444433221111111
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCC
Q 000134 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGR 1198 (2096)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~ 1198 (2096)
+-.-.++..|+|.+|..+|+++ ++.+....+.+|+.++|+|+.++.+..--....++. .+...-+.|-.++++
T Consensus 1110 qLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~--~Idt~LafaYAKl~r 1182 (1630)
T 1xi4_A 1110 QLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAKTNR 1182 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc--cccHHHHHHHHhhcC
Confidence 2234578999999999999875 566677789999999999999888765322111110 011113345566799
Q ss_pred hhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHHHHhh
Q 000134 1199 WDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLH 1278 (2096)
Q Consensus 1199 Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~kLH 1278 (2096)
++.+++|+.... ...+. .+|..+ ...++.++....-+.+ ..|.+.-..++++
T Consensus 1183 leele~fI~~~n-----------~ad~~-~iGd~l--e~eg~YeeA~~~Y~kA-------------~ny~rLA~tLvkL- 1234 (1630)
T 1xi4_A 1183 LAELEEFINGPN-----------NAHIQ-QVGDRC--YDEKMYDAAKLLYNNV-------------SNFGRLASTLVHL- 1234 (1630)
T ss_pred HHHHHHHHhCCC-----------HHHHH-HHHHHH--HhcCCHHHHHHHHHhh-------------hHHHHHHHHHHHh-
Confidence 999999875322 12333 355444 3344444333322211 2333333333333
Q ss_pred hhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHHH
Q 000134 1279 LLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKL 1358 (2096)
Q Consensus 1279 ~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~Akl 1358 (2096)
.|++++++.. |++ ...++|.+.+-.
T Consensus 1235 --ge~q~AIEaa--------------------------------------------rKA---------~n~~aWkev~~a 1259 (1630)
T 1xi4_A 1235 --GEYQAAVDGA--------------------------------------------RKA---------NSTRTWKEVCFA 1259 (1630)
T ss_pred --CCHHHHHHHH--------------------------------------------HHh---------CCHHHHHHHHHH
Confidence 3444444332 221 012578888999
Q ss_pred HHHcCChHHHHHHHHHHhhcCCChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1359 CRLAGHYETATRAILEAQASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1359 ARKag~~~~A~~all~a~~~~~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
|-..|.+..|..+.++. ...|+..-+-++.+-+.|..++||..++.++.
T Consensus 1260 cve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred HhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999999999988863 23455555778889999999999999998875
No 56
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=96.76 E-value=0.024 Score=70.99 Aligned_cols=318 Identities=11% Similarity=0.006 Sum_probs=154.7
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHH----Hhc-cC---
Q 000134 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLAR----LHK-SL--- 1115 (2096)
Q Consensus 1044 ~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~----~~~-~~--- 1115 (2096)
..||..-..=|.|..||-++++.+.-.+... +. . .....-..+..|..+|..+++.+-...... +.. ..
T Consensus 55 n~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~-~~-~-~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 55 NLLAYLKHLKGQNEAALECLRKAEELIQQEH-AD-Q-AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS-GG-G-CTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcC-cc-c-cchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 3678888888999999999998754221100 00 0 001112346789999999999998766542 111 11
Q ss_pred Chh------HHHHHh--HhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHH---hccChHHHHHHhhhhhccChhhhhh
Q 000134 1116 SLQ------DELLSN--KKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLL---NMCHLQAMVTHVDGLISRIPQYKKT 1184 (2096)
Q Consensus 1116 sl~------~qil~~--E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~---~LGq~~~ll~~~~gl~~~~p~~~~~ 1184 (2096)
... .....+ ...+++++|..+|+++++..|++.+...++-.++. +.|+++..+...+..+...|+....
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~ 211 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYL 211 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHH
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHH
Confidence 111 111222 23457999999999999999999988877666644 4455554444333322333332222
Q ss_pred HhHHHHH---HHHhcCChhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhc
Q 000134 1185 WCMQGVQ---AAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAA 1261 (2096)
Q Consensus 1185 ~~~~~vE---AAWrlg~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa 1261 (2096)
+..++.. .....|+++.-.+++...-.. .+........+|.++ ...++.....+..+++... .+
T Consensus 212 ~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~------~~~~~~~~~~lg~~~--~~~~~~~~A~~~~~~al~~-----~p 278 (472)
T 4g1t_A 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEK------APGVTDVLRSAAKFY--RRKDEPDKAIELLKKALEY-----IP 278 (472)
T ss_dssp HHHHHHHHHHCC------CHHHHHHHHHHHH------CSSCHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHH-----ST
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh------CccHHHHHHHHHHHH--HHcCchHHHHHHHHHHHHh-----CC
Confidence 2222221 112234555544444332110 001122233455444 3445554444444333211 11
Q ss_pred cchhhHHhhhHHHHHhhhhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCc
Q 000134 1262 AGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGA 1341 (2096)
Q Consensus 1262 ~~~eSy~r~y~~l~kLH~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~ 1341 (2096)
..... |..+-.++. +.......... .. ... .......+ .+.+-.++++ ...
T Consensus 279 ~~~~~----~~~lg~~y~----~~~~~~~~~~~---~~-~~~---~~~~~~~~-------------~~A~~~~~~a-~~~ 329 (472)
T 4g1t_A 279 NNAYL----HCQIGCCYR----AKVFQVMNLRE---NG-MYG---KRKLLELI-------------GHAVAHLKKA-DEA 329 (472)
T ss_dssp TCHHH----HHHHHHHHH----HHHHHHHHC----------C---HHHHHHHH-------------HHHHHHHHHH-HHH
T ss_pred ChHHH----HHHHHHHHH----HHHHHhhhHHH---HH-HHH---HHHHHhhH-------------HHHHHHHHHH-hhc
Confidence 11111 111111110 00000000000 00 000 00000000 0111112221 111
Q ss_pred CCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCh-----HHHHHHHHH-HHcCCchHHHHHHHHHhh
Q 000134 1342 SGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAPN-----VHMEKAKLL-WSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1342 ~~~~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~~~-----~~iE~AKLL-W~~g~~~~Ai~~L~~~i~ 1409 (2096)
.......|...+.+..+.|+++.|.....+|.....+. +....+.++ ...|+.++|+...+++++
T Consensus 330 ---~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~ 400 (472)
T 4g1t_A 330 ---NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400 (472)
T ss_dssp ---CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred ---CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 12234468889999999999999999999988765433 234445543 567889999999999876
No 57
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=96.72 E-value=2.4 Score=54.09 Aligned_cols=134 Identities=12% Similarity=0.141 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHHHHcC----Ch----HHHHHHHHHHhhc--CCChHHHHHHHHHHH-------cCCch-------HHHHH
Q 000134 1348 VGNCWLQYAKLCRLAG----HY----ETATRAILEAQAS--GAPNVHMEKAKLLWS-------TRRSD-------GAIAE 1403 (2096)
Q Consensus 1348 ~~~~WL~~AklARKag----~~----~~A~~all~a~~~--~~~~~~iE~AKLLW~-------~g~~~-------~Ai~~ 1403 (2096)
....|..+...-++++ .. +.|.....+|... ..+.+.+.+|++++. .|+.. +|+..
T Consensus 229 ~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~ 308 (530)
T 2ooe_A 229 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 308 (530)
T ss_dssp HHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH
Confidence 3568888887777643 11 2444444455443 357899999999997 78877 89999
Q ss_pred HHHHhhc-CCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 000134 1404 LQQNLLN-KPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVREL 1482 (2096)
Q Consensus 1404 L~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l 1482 (2096)
++++++. .| ..+.+++.++.+....|+ .+++.+.|.++++.
T Consensus 309 ~~~Al~~~~p------------------------------------~~~~l~~~~~~~~~~~g~--~~~A~~~~~~al~~ 350 (530)
T 2ooe_A 309 YERAISTLLK------------------------------------KNMLLYFAYADYEESRMK--YEKVHSIYNRLLAI 350 (530)
T ss_dssp HHHHTTTTCS------------------------------------SCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHS
T ss_pred HHHHHHHhCc------------------------------------ccHHHHHHHHHHHHhcCC--HHHHHHHHHHHhCc
Confidence 9998752 11 014467778887777664 88999999999999
Q ss_pred ccch-HHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCc
Q 000134 1483 QPMW-EKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHK 1541 (2096)
Q Consensus 1483 ~~~w-eK~~~~la~y~d~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~ 1541 (2096)
.|.. ..+|..+|.++.+.- -...+...|-+++...+.
T Consensus 351 ~p~~~~~~~~~~~~~~~~~~----------------------~~~~A~~~~~~Al~~~~~ 388 (530)
T 2ooe_A 351 EDIDPTLVYIQYMKFARRAE----------------------GIKSGRMIFKKAREDART 388 (530)
T ss_dssp SSSCHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHTCTTC
T ss_pred cccCchHHHHHHHHHHHHhc----------------------CHHHHHHHHHHHHhccCC
Confidence 9875 468999988864321 122477778888876543
No 58
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=96.65 E-value=0.16 Score=55.84 Aligned_cols=107 Identities=16% Similarity=0.042 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~ 1426 (2096)
...|...+.+..+.|+++.|...+.++.... .+.+....|.+++..|+..+|+..+++++...|.
T Consensus 113 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------------- 179 (225)
T 2vq2_A 113 YIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEV------------- 179 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS-------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------------
Confidence 4567788888899999999999888887664 3567788899999999999999999988652110
Q ss_pred cCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHH
Q 000134 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFY 1492 (2096)
Q Consensus 1427 ~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~ 1492 (2096)
. + ..++..++......|. .+++...++.+.+..|....++..
T Consensus 180 -----~--------------~---~~~~~~~~~~~~~~~~--~~~a~~~~~~~~~~~p~~~~~~~~ 221 (225)
T 2vq2_A 180 -----L--------------Q---ADDLLLGWKIAKALGN--AQAAYEYEAQLQANFPYSEELQTV 221 (225)
T ss_dssp -----C--------------C---HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred -----C--------------C---HHHHHHHHHHHHhcCc--HHHHHHHHHHHHHhCCCCHHHHHH
Confidence 0 0 1223344444444443 667777777777888876655443
No 59
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=96.64 E-value=1.1 Score=62.09 Aligned_cols=388 Identities=11% Similarity=0.093 Sum_probs=191.6
Q ss_pred hcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHHHHHHHHHhhhc--CChhHHHHHHHHHHHHHhhhcccch
Q 000134 200 LNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAA--DDPLILETLLESTAELMMAVDVHSQ 277 (2096)
Q Consensus 200 ~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~i~eTll~~~~~i~~~~~~~~e 277 (2096)
.+++-..|+|++..+.++.+. -.... ..++..+-..+... .+|.|..+.+.++|+...-...+.+
T Consensus 459 ~~~~w~~~eaal~al~~i~~~---------~~~~~----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~ 525 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAET---------IDVNY----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV 525 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTS---------CCSSC----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH
T ss_pred CCCchHHHHHHHHHHHHHHhh---------cCchh----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH
Confidence 456667899998888886521 11111 12344444333332 4789999999999998553333456
Q ss_pred hHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccchhhhhhhhhhHHHHHH---hcCchHHHHHHHHHHh
Q 000134 278 HFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVR---LASRPIMVREFAEAAF 354 (2096)
Q Consensus 278 ~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~---l~~rp~~~~~~~e~ll 354 (2096)
.+..++=.|+..|.+ +-|+..|...+.++|+.... .+.++...+.+.|...+.+. -..++.....++. ++
T Consensus 526 ~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~----~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~-i~ 598 (963)
T 2x19_B 526 MINSVLPLVLHALGN--PELSVSSVSTLKKICRECKY----DLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGF-LL 598 (963)
T ss_dssp HHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGG----GCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHH-HH
Confidence 676667778899965 78999999999999987643 24466655544444444431 1233444555553 44
Q ss_pred C-CChHHHHH---hhcccccchhhh--ccccChhH-------HHHHHHHHHHcCCC----------------------ch
Q 000134 355 G-VETEELVK---KMIPAVLPKLVV--SQQDNDQA-------VNIINELAKCLNTD----------------------MV 399 (2096)
Q Consensus 355 g-~~~~~fL~---~~~~~~LP~LVl--~~~~~~~~-------~~~i~~ia~~~~~~----------------------~~ 399 (2096)
. ++.+++.. ...+..++.+-. ....+... ...|..+++.++.. ..
T Consensus 599 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (963)
T 2x19_B 599 SALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVV 678 (963)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchH
Confidence 3 33233322 222222222211 11112121 13344566665532 11
Q ss_pred hHHhhhHHHHHHHHhc--cccHHHHHHHHHHHhh---hcCCChHHHHHHhhHHHHHHHHH-hhcCCCchhHhhhhcchhH
Q 000134 400 PLIVTWIPKVLAFALH--QADERRLLSALEFYCI---QTGSDNQEIFAAALPALLDELIC-FVDGGDSDEINERLNRVPR 473 (2096)
Q Consensus 400 ~l~~~~~~~Ila~ll~--~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~eLl~-~~~~~~~~~~~~~~~~~~~ 473 (2096)
+++..-++-++ .++. ..+.+....+..++.. ..+.+.. ..+|.++..++. +.+... +.+-.
T Consensus 679 ~~~~~~~~~~~-~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~----~~l~~~~~~l~~~~~~~~~--------~~~l~ 745 (963)
T 2x19_B 679 VVLQQVFQLIQ-KVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA----PMVPQLCEMLGRMYSTIPQ--------ASALD 745 (963)
T ss_dssp HHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG----GGHHHHHHHHHHHHHHSCC--------HHHHH
T ss_pred HHHHHHHHHHH-HHHHhccCchHHHHHHHHHHHHHHHhhccccc----ccHHHHHHHHHHHHHcCCc--------cHHHH
Confidence 22222222222 2221 1122222323333322 2332222 223444433322 111111 01111
Q ss_pred HHHHHhhhccCCCC----hhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhcccc--ccc-hhhHHHHHH
Q 000134 474 VIRKVSTVLTGNED----LPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHL--TTY-VPKILVLLM 546 (2096)
Q Consensus 474 ~~~~~~~~~~~~~~----~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~~v--~~~-~pqI~a~L~ 546 (2096)
.+..+.+.....+. +..+++.-+-.++..|++.+ .+....++....-++.+++-+.+.+ ++. ...|+.++.
T Consensus 746 l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~--~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~ 823 (963)
T 2x19_B 746 LTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGP--RDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAV 823 (963)
T ss_dssp HHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCT--TTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHH
T ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCc--ccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHH
Confidence 12222111111222 22333322222222233211 1235567888999999998887754 344 677888888
Q ss_pred HHhcC--CCcchhhhHHHHHHHHHhccCC------CcchhhHHHHHHHHhhhccccCCCCchhhHHHHHHHHHHHHHHhH
Q 000134 547 HAINK--ESLQCEGLSVLHFFIEQLSRVS------PSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNR 618 (2096)
Q Consensus 547 ~aL~~--~~L~~~~l~~W~~fv~~L~~~~------~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~ 618 (2096)
.+|.. ++....++..|..++....... ......++.+++..+. . ..++...+.+.++|..|+..++
T Consensus 824 ~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~---~---~~~~~~~~~~~~il~~l~~~~~ 897 (963)
T 2x19_B 824 LALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIG---G---QASRSLMDCFADILFALNKHCF 897 (963)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHT---T---TSCGGGHHHHHHHHHHHHHHSH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhc---c---cCChhHHHHHHHHHHHHHHHCh
Confidence 88853 3456678888888876532100 0122344444544442 1 1222334667778888888788
Q ss_pred HHHHhhcccC
Q 000134 619 AILKQHIHEF 628 (2096)
Q Consensus 619 ~~L~~~i~~l 628 (2096)
+.+.+++..+
T Consensus 898 ~~~~~~l~~~ 907 (963)
T 2x19_B 898 SLLSMWIKEA 907 (963)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776544
No 60
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=96.58 E-value=0.025 Score=58.44 Aligned_cols=114 Identities=13% Similarity=0.052 Sum_probs=94.1
Q ss_pred CCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccc
Q 000134 1344 LGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAI 1421 (2096)
Q Consensus 1344 ~~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~ 1421 (2096)
++++.++.|-.-+....+.|.++.|.....+|....+ +.+....|..+...|+..+|+..++++++-.|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--------- 78 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS--------- 78 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh---------
Confidence 5678888999999999999999999999999988754 56788899999999999999999999876211
Q ss_pred ccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHh
Q 000134 1422 SSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAK 1495 (2096)
Q Consensus 1422 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~ 1495 (2096)
..++++..+|.-....|+ .++.++.|++|++++|+...++..++.
T Consensus 79 ---------------------------~~~~a~~~lg~~~~~~~~--~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 79 ---------------------------KFIKGYIRKAACLVAMRE--WSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp ---------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ---------------------------hhhHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 114567777776666654 788999999999999999888887765
No 61
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=96.45 E-value=0.087 Score=70.81 Aligned_cols=137 Identities=16% Similarity=0.203 Sum_probs=112.2
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000134 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2096)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~ 1423 (2096)
.+.++.|...+.+.++.|+++.|..+..+|.++. .+.+....|.++.+.|+..+|+..++++++-.|
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P----------- 74 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP----------- 74 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------
Confidence 3567889999999999999999999999998875 356788899999999999999999999886221
Q ss_pred ccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHH
Q 000134 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVD 1503 (2096)
Q Consensus 1424 ~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~ 1503 (2096)
..+.++..+|.-+.+.|+ .++.++.|++|++++|+...+|+.+|.-|.+.
T Consensus 75 -------------------------~~~~a~~nLg~~l~~~g~--~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~--- 124 (723)
T 4gyw_A 75 -------------------------TFADAYSNMGNTLKEMQD--VQGALQCYTRAIQINPAFADAHSNLASIHKDS--- 124 (723)
T ss_dssp -------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---
T ss_pred -------------------------CCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---
Confidence 115567777777766665 78899999999999999999999999876432
Q ss_pred HHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcc
Q 000134 1504 ARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2096)
Q Consensus 1504 ~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~ 1542 (2096)
| -...|+.+|-+++...+++
T Consensus 125 -----------g--------~~~eAi~~~~~Al~l~P~~ 144 (723)
T 4gyw_A 125 -----------G--------NIPEAIASYRTALKLKPDF 144 (723)
T ss_dssp -----------T--------CHHHHHHHHHHHHHHCSCC
T ss_pred -----------C--------CHHHHHHHHHHHHHhCCCC
Confidence 1 1236899999999988765
No 62
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=96.43 E-value=0.22 Score=62.08 Aligned_cols=154 Identities=12% Similarity=0.055 Sum_probs=103.1
Q ss_pred HHHHHHHhhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhh--hhhh
Q 000134 148 LLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDT--VLSS 225 (2096)
Q Consensus 148 ~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~--~~~~ 225 (2096)
.-+.+.++|-++.+.+|+.....+|..+..+.+.....-....-+..+-.++.+++..||+.++..+..+..+. .-..
T Consensus 65 ~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~ 144 (450)
T 2jdq_A 65 VVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144 (450)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHH
Confidence 44557777777768899999999999999876543210011223445555668999999999999999875221 0000
Q ss_pred hccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhh--cccchhHHHHHHHHHHhhCCCCcchHHHHHH
Q 000134 226 LFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAV--DVHSQHFLFLLILLVEQLDNPHVTVRMNASR 303 (2096)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~--~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~ 303 (2096)
++. ...+..+-+.+....++.+++..+.+++.++... ........-++-.|+..|.++++-++..|..
T Consensus 145 ~~~----------~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~ 214 (450)
T 2jdq_A 145 VLD----------CNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACW 214 (450)
T ss_dssp HHH----------TTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHH----------CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 110 1234555565555578899999999999996432 1122223334556788888999999999999
Q ss_pred HHHHHhhh
Q 000134 304 LIRKSCFF 311 (2096)
Q Consensus 304 ~i~~l~~~ 311 (2096)
-+.++|..
T Consensus 215 ~L~~l~~~ 222 (450)
T 2jdq_A 215 ALSYLSDG 222 (450)
T ss_dssp HHHHHTSS
T ss_pred HHHHHHCC
Confidence 99888764
No 63
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=96.43 E-value=0.66 Score=59.64 Aligned_cols=148 Identities=8% Similarity=0.025 Sum_probs=92.2
Q ss_pred HHHHhhcccCccchhhHHHHHHHHHHccCC-ch--hhhhhhhHHHHHHHHHhhcc-cHHHHHHHHHHHhHhhhh--hhhh
Q 000134 151 IYFEFLYDESSEEVQLSCVRVIRRILVHGT-RD--VLLKTRSEWIKCIEFLLLNK-RKAIRDAFCTQIGYFLQD--TVLS 224 (2096)
Q Consensus 151 ~~~~~l~~~~~~~v~~~~~~~l~~il~h~~-~~--~~~~~~~~w~~~~~~~~~~~-~r~vR~a~~~~~~~~~~~--~~~~ 224 (2096)
.+++.|..+ +.+++..++..|++++.+.. .. ..+. ...+.-|-.+|.++ +..||..++..+..+... ....
T Consensus 91 ~lv~~L~s~-~~~~~~~A~~~L~~ll~~~~~~~~~~~~~--~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 167 (530)
T 1wa5_B 91 QMTQQLNSD-DMQEQLSATVKFRQILSREHRPPIDVVIQ--AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK 167 (530)
T ss_dssp HHHHHHSCS-SHHHHHHHHHHHHHHTCCSSSCSHHHHHH--TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHcCC-CHHHHHHHHHHHHHHhCCCCCccHHHHHH--CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 355666554 57899999999999998753 21 1111 11223333344776 899999999999886521 0111
Q ss_pred hhccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHH--HHHHHHHHhhCCCCcchHHHHH
Q 000134 225 SLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFL--FLLILLVEQLDNPHVTVRMNAS 302 (2096)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~--~~l~~Li~~L~~~n~~v~~~A~ 302 (2096)
.+.. ...+..+.+.+. ..|+.+++..+.+++.|........+.+. -++-.|+..|.++++-++..|.
T Consensus 168 ~~~~----------~g~i~~Lv~lL~-~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~ 236 (530)
T 1wa5_B 168 VVVD----------ADAVPLFIQLLY-TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTAT 236 (530)
T ss_dssp HHHH----------TTCHHHHHHHHH-HCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHH
T ss_pred HHHH----------CCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHH
Confidence 1111 112333444333 36889999999999999542111111111 1344588888888999999999
Q ss_pred HHHHHHhhhh
Q 000134 303 RLIRKSCFFH 312 (2096)
Q Consensus 303 ~~i~~l~~~~ 312 (2096)
.-+.++|...
T Consensus 237 ~~L~~L~~~~ 246 (530)
T 1wa5_B 237 WTLSNLCRGK 246 (530)
T ss_dssp HHHHHHHCCS
T ss_pred HHHHHHhCCC
Confidence 9999998764
No 64
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=96.42 E-value=0.72 Score=64.00 Aligned_cols=389 Identities=13% Similarity=0.096 Sum_probs=178.0
Q ss_pred ccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHHHHHHHHHhhh-cCChhHHHHHHHHHHHHHhhhcccchhHH
Q 000134 202 KRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTA-ADDPLILETLLESTAELMMAVDVHSQHFL 280 (2096)
Q Consensus 202 ~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~i~eTll~~~~~i~~~~~~~~e~~~ 280 (2096)
++=..|+|+...+.++.+. -..........++..+ -.+.. ..+|.|++|.+.++|+...-...+.+.+.
T Consensus 476 ~~w~~~eaal~~l~~iae~---------~~~~~~~~l~~l~~~l-~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~ 545 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEH---------FGGEEKRQIPRLMRVL-AEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP 545 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC---------------CHHHHHHHHH-HHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH
T ss_pred CcHHHHHHHHHHHHHHHhh---------cChhhhHHHHHHHHHH-HhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 4556788988888885411 1111112223344422 22332 13799999999999998654444456777
Q ss_pred HHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccchhhhhhhhhhHHHHHH---hcCchHHHHHHHHHHhC-C
Q 000134 281 FLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVR---LASRPIMVREFAEAAFG-V 356 (2096)
Q Consensus 281 ~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~---l~~rp~~~~~~~e~llg-~ 356 (2096)
-++=.|+..|+ +-|+..|..-|.++|+.... .+.++...+.+.++..+.+. -..++...+.++. +++ +
T Consensus 546 ~vl~~l~~~l~---~~v~~~A~~al~~l~~~~~~----~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~-i~~~~ 617 (971)
T 2x1g_F 546 PAINLLVRGLN---SSMSAQATLGLKELCRDCQL----QLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGK-LMSLL 617 (971)
T ss_dssp HHHHHHHHHHH---SSCHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHH-HHHTS
T ss_pred HHHHHHHHHhC---hHHHHHHHHHHHHHHHHHHH----hccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHH-HHHhC
Confidence 77777888883 67899999999999976643 23455544544444444431 2234444555553 333 2
Q ss_pred ChHH---HHHhhcccccchhhhcccc---C----hhHHHH---HHHHHHHcCC-------------CchhHHhhhHHHHH
Q 000134 357 ETEE---LVKKMIPAVLPKLVVSQQD---N----DQAVNI---INELAKCLNT-------------DMVPLIVTWIPKVL 410 (2096)
Q Consensus 357 ~~~~---fL~~~~~~~LP~LVl~~~~---~----~~~~~~---i~~ia~~~~~-------------~~~~l~~~~~~~Il 410 (2096)
+.++ ++....+.++..+-...+. + ...... |..+...++. ...+.+..-++-+.
T Consensus 618 ~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 697 (971)
T 2x1g_F 618 RPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFK 697 (971)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHH
Confidence 2222 2222222222222111010 1 112223 3333333332 12333333333222
Q ss_pred HHHhc-c-ccHHHHHHHHHHHhh---hcCCChHHHHHHhhHHHHHHHHHhhcCCCchhHhhhhcchhHHHHHHhhhcc--
Q 000134 411 AFALH-Q-ADERRLLSALEFYCI---QTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLT-- 483 (2096)
Q Consensus 411 a~ll~-~-~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~eLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 483 (2096)
.++- . .+.+...++..++.. ..+.+ +...+|.++.-|+..+.... ....+..++.++.
T Consensus 698 -~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~----~~p~l~~~~~~l~~~~~~~~----------~~~~l~l~~~~i~~~ 762 (971)
T 2x1g_F 698 -RIAEMWVEEIDVLEAACSAMKHAITNLRSS----FQPMLQDLCLFIVASFQTRC----------CAPTLEISKTAIVMF 762 (971)
T ss_dssp -HHHHHTTTCHHHHHHHHHHHHHHHHHHHC------CTHHHHHHHHHHHHCC--C----------CHHHHHHHHHHHTTC
T ss_pred -HHHHhccccHHHHHHHHHHHHHHHHhhhhh----ccccHHHHHHHHHHHHhcCC----------chHHHHHHHHHHHHh
Confidence 2321 1 123333333333332 22211 12234555533332222111 0112222222222
Q ss_pred CC-CChhhhhHHHHHHHHHHhhhhhcCC------CChHHHHHHHHHHHHHHHHhcccc--ccc-hhhHHHHHHHHhc--C
Q 000134 484 GN-EDLPGFLRNHFVGLLNSIDRKMLHA------EDLSLQKQALKRIEILIEMIGSHL--TTY-VPKILVLLMHAIN--K 551 (2096)
Q Consensus 484 ~~-~~~~~fl~~~~LGil~~~~~~l~~~------~~~~~k~~~l~sl~~li~l~g~~v--~~~-~pqI~a~L~~aL~--~ 551 (2096)
|. +...+.+.+-+-.++..+-..+... .....++..+.=+..+++.+-.++ ++. .+.|+-+...+|. .
T Consensus 763 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~l~~~~ 842 (971)
T 2x1g_F 763 FKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTLPE 842 (971)
T ss_dssp CC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHHHHTSSC
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCC
Confidence 22 2333333333333333221111111 122344555566667776554443 355 7888888888874 3
Q ss_pred CCcchhhhHHHHHHHHHhccCCCcchhhHH----HHHHHHhhhccccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhccc
Q 000134 552 ESLQCEGLSVLHFFIEQLSRVSPSSTKHVI----SQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHE 627 (2096)
Q Consensus 552 ~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll----~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~ 627 (2096)
++-...++++|..++.. .. ..+.+..++ ..++..++.-+. ...+....+.+..+|..|+..+.+....++..
T Consensus 843 ~~~~~s~~~fl~~~i~~-~~-~~~~~~~~~~~~g~~l~~~l~~~~~--~~~~~s~~~~~a~~l~~l~~~~~~~~~~~l~~ 918 (971)
T 2x1g_F 843 SGAIRNSIQFLTHFVMQ-SR-NHAHVTEVVLATGEQTLYTAMMCVG--YLTPRSQVDKFADILLAMNRKYAAEMAVWMKS 918 (971)
T ss_dssp SSHHHHHHHHHHHHHHH-HT-TCHHHHHHHHHHHHHHHHHHHHHHH--TTSCGGGGGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc-CC-chHHHHHHHHHhHHHHHHHHHHHhc--ccCChhHHHHHHHHHHHHHHHCcHHHHHHHHH
Confidence 44556788999998776 21 123333333 223333322221 11223334567788999988888777666653
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=96.39 E-value=0.16 Score=54.81 Aligned_cols=136 Identities=15% Similarity=0.202 Sum_probs=99.1
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~ 1424 (2096)
+.+..|+..+.+.++.|.++.|.....+|.+.. .+.+....|.++...|+..+|+..++.++...+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~----------- 71 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT----------- 71 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-----------
Confidence 457789999999999999999999999998775 4567889999999999999999999988653211
Q ss_pred cccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHH
Q 000134 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDA 1504 (2096)
Q Consensus 1425 ~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~~ 1504 (2096)
.+.++..+|......++ .+.....|.++.+..|....+|+.+|..|.+.
T Consensus 72 -------------------------~~~~~~~~~~~~~~~~~--~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~---- 120 (184)
T 3vtx_A 72 -------------------------SAEAYYILGSANFMIDE--KQAAIDALQRAIALNTVYADAYYKLGLVYDSM---- 120 (184)
T ss_dssp -------------------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----
T ss_pred -------------------------hHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCccchHHHHHHHHHHHHh----
Confidence 02344555555444443 66777788888888888888888887766422
Q ss_pred HhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcc
Q 000134 1505 RKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2096)
Q Consensus 1505 ~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~ 1542 (2096)
| -...|+..|-+++...+.+
T Consensus 121 ----------g--------~~~~A~~~~~~~l~~~p~~ 140 (184)
T 3vtx_A 121 ----------G--------EHDKAIEAYEKTISIKPGF 140 (184)
T ss_dssp ----------T--------CHHHHHHHHHHHHHHCTTC
T ss_pred ----------C--------CchhHHHHHHHHHHhcchh
Confidence 0 1135777777777766543
No 66
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=96.34 E-value=0.077 Score=64.22 Aligned_cols=62 Identities=15% Similarity=0.059 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CC----ChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQAS----GA----PNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~all~a~~~----~~----~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
.+..|...|.+..+.|.++.|...+.+|... +. +.+....|.++...|+..+|+..++++++
T Consensus 266 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 266 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4667889999999999999999988887654 22 34677889999999999999999999875
No 67
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=96.32 E-value=1.5 Score=56.62 Aligned_cols=103 Identities=8% Similarity=0.018 Sum_probs=69.1
Q ss_pred hhcccHHHHHHHHHHHhHhh---hhhhhhhhccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhccc
Q 000134 199 LLNKRKAIRDAFCTQIGYFL---QDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVH 275 (2096)
Q Consensus 199 ~~~~~r~vR~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~ 275 (2096)
+.+.|..++..+...+..++ .++-++.+.. ..++-.+-+.+...+++.++....-+++.|....+.+
T Consensus 85 l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~----------~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~ 154 (529)
T 3tpo_A 85 INSNNLESQLQATQAARKLLSREKQPPIDNIIR----------AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 154 (529)
T ss_dssp HTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHH----------TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHH----------CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 37888888888888887766 1222222222 2245566666767788999998888888884332222
Q ss_pred chhHHH--HHHHHHHhhCCCCcchHHHHHHHHHHHhhh
Q 000134 276 SQHFLF--LLILLVEQLDNPHVTVRMNASRLIRKSCFF 311 (2096)
Q Consensus 276 ~e~~~~--~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~ 311 (2096)
.+.+.- ++=.|+..|.++++-++-.|..-+.+||..
T Consensus 155 ~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~ 192 (529)
T 3tpo_A 155 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGA 192 (529)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcc
Confidence 222211 345688999999999999999999998754
No 68
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=96.32 E-value=0.55 Score=60.24 Aligned_cols=346 Identities=13% Similarity=0.124 Sum_probs=175.0
Q ss_pred HHHhhcccCccchhhHHHHHHHHHHccCC-ch--hhhhhhhHHHHHHHHHhhccc-HHHHHHHHHHHhHhhhhhhhhhhc
Q 000134 152 YFEFLYDESSEEVQLSCVRVIRRILVHGT-RD--VLLKTRSEWIKCIEFLLLNKR-KAIRDAFCTQIGYFLQDTVLSSLF 227 (2096)
Q Consensus 152 ~~~~l~~~~~~~v~~~~~~~l~~il~h~~-~~--~~~~~~~~w~~~~~~~~~~~~-r~vR~a~~~~~~~~~~~~~~~~~~ 227 (2096)
+.+.|..+ ..+++...+..|++++.... .. ..+. ...+.-|-.+|.+++ ..+|..++..+..+..
T Consensus 79 lv~~L~s~-~~~~~~~A~~~L~~l~s~~~~~~~~~~~~--~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~-------- 147 (528)
T 4b8j_A 79 MIGGVYSD-DNNLQLEATTQFRKLLSIERSPPIEEVIQ--SGVVPRFVQFLTREDFPQLQFEAAWALTNIAS-------- 147 (528)
T ss_dssp HHHHHTSS-CHHHHHHHHHHHHHHHTCSSSCCHHHHHH--TTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHT--------
T ss_pred HHHHHcCC-CHHHHHHHHHHHHHHhcCCCCchHHHHHH--CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhC--------
Confidence 55566544 67899999999999988765 22 1111 112223333447776 9999999999988651
Q ss_pred cCcccccch--hhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHH--HHHHHHHhh-CCCCcchHHHHH
Q 000134 228 LDENASSRS--NELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLF--LLILLVEQL-DNPHVTVRMNAS 302 (2096)
Q Consensus 228 ~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~--~l~~Li~~L-~~~n~~v~~~A~ 302 (2096)
++. ..+. .....+..+-..+.. .++.+++..+.+++.|........+.+.- ++-.|+..| .++++.++..|.
T Consensus 148 -~~~-~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~ 224 (528)
T 4b8j_A 148 -GTS-ENTKVVIDHGAVPIFVKLLGS-SSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNAT 224 (528)
T ss_dssp -SCH-HHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHH
T ss_pred -CCH-HHHHHHHhCCcHHHHHHHhcC-CCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHH
Confidence 110 0000 001245555564544 68899999999999995322111122211 345688888 678899999999
Q ss_pred HHHHHHhhhhcccccccccchhhhhhhhhhHHHHHHhcCc-hHHHHHHHHHHh--CCChHHHH-Hhhcccccchhhhccc
Q 000134 303 RLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASR-PIMVREFAEAAF--GVETEELV-KKMIPAVLPKLVVSQQ 378 (2096)
Q Consensus 303 ~~i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~r-p~~~~~~~e~ll--g~~~~~fL-~~~~~~~LP~LVl~~~ 378 (2096)
.-|.++|........ .......+.+++-|.+. |......|..|- ....++.. .....-++|.||-.-+
T Consensus 225 ~~L~~L~~~~~~~~~--------~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~ 296 (528)
T 4b8j_A 225 WTLSNFCRGKPQPSF--------EQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL 296 (528)
T ss_dssp HHHHHHHCSSSCCCH--------HHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHcCCCCCcH--------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHc
Confidence 999999876522111 11133456666666533 333333332111 11222222 2223356777775322
Q ss_pred c-Ch-hHHHHHHHHHHHcCCC---chhHHhhhHHHHHHHHhccc-cHHHHHHHHHHHhhhcCCChH---HHHH-HhhHHH
Q 000134 379 D-ND-QAVNIINELAKCLNTD---MVPLIVTWIPKVLAFALHQA-DERRLLSALEFYCIQTGSDNQ---EIFA-AALPAL 448 (2096)
Q Consensus 379 ~-~~-~~~~~i~~ia~~~~~~---~~~l~~~~~~~Ila~ll~~~-~~~~~~~~l~~~~~~~~~~~~---~~~~-~~~~~~ 448 (2096)
. +. .....+..|+.....+ ...++.......|..++... .+.....+...+.+.+..+.. .++. ..+|.+
T Consensus 297 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L 376 (528)
T 4b8j_A 297 HPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPL 376 (528)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHH
T ss_pred CCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHH
Confidence 1 21 1224444554443322 22333344444445555544 443333333334433332222 2333 233444
Q ss_pred HHHHHHhhcCCCchhHhhhhcchhHHHHHHhhhccCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHH
Q 000134 449 LDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIE 528 (2096)
Q Consensus 449 l~eLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~ 528 (2096)
+ +++ ..++.+ .++ .+..++..++.. +......+|.. .|++..|-.- +...+...+..++.+|+.|++
T Consensus 377 ~-~lL---~~~~~~-v~~---~a~~aL~nl~~~--~~~~~~~~l~~--~~~i~~L~~l-L~~~d~~v~~~al~~L~~l~~ 443 (528)
T 4b8j_A 377 V-NLL---QTAEFD-IKK---EAAWAISNATSG--GSHDQIKYLVS--EGCIKPLCDL-LICPDIRIVTVCLEGLENILK 443 (528)
T ss_dssp H-HHH---HHSCHH-HHH---HHHHHHHHHHHH--SCHHHHHHHHH--TTCHHHHHHG-GGCSCHHHHHHHHHHHHHHHH
T ss_pred H-HHH---hcCCHH-HHH---HHHHHHHHHHcC--CCHHHHHHHHH--CCCHHHHHHH-HcCCCHHHHHHHHHHHHHHHH
Confidence 4 343 223322 111 123344333321 12222222221 1455554433 344567788899999999988
Q ss_pred Hhcc
Q 000134 529 MIGS 532 (2096)
Q Consensus 529 l~g~ 532 (2096)
....
T Consensus 444 ~~~~ 447 (528)
T 4b8j_A 444 VGET 447 (528)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7644
No 69
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=96.31 E-value=2 Score=58.04 Aligned_cols=508 Identities=13% Similarity=0.071 Sum_probs=252.5
Q ss_pred ccchhhHHHHHHHHHHccCCchhhhhhhhHHHH-HHHHH---hhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccch
Q 000134 161 SEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIK-CIEFL---LLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRS 236 (2096)
Q Consensus 161 ~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~-~~~~~---~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (2096)
.+++|-.+--+|.||..-...|- .|+.+.+ |-+|+ +...+-+-..-+..+ +..+|.+.......
T Consensus 217 ~~~~r~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a---------lt~i~~g~~~~~~~ 284 (810)
T 3now_A 217 TGSSSTIASVCLARIYENMYYDE---AKARFTDQIDEYIKDKLLAPDMESKVRVTVA---------ITALLNGPLDVGNQ 284 (810)
T ss_dssp CTTHHHHHHHHHHHHHHTCCSHH---HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHH---------HHHHHSSSHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHhccch---hHHHHHHHHHHHHHHHhccCChHhHHHHHHH---------HHHHhcCCHHHHHH
Confidence 34455556666666666655542 2344442 43333 122222222222333 44455554221111
Q ss_pred h--hHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcc
Q 000134 237 N--ELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLK 314 (2096)
Q Consensus 237 ~--~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~ 314 (2096)
- .+-++..+-+ +...+|+.+++-.++.++.++........+.....=.|+..|...+..+|..|.--+++++.....
T Consensus 285 ~~~~~G~v~~li~-Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~ 363 (810)
T 3now_A 285 VVAREGILQMILA-MATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQ 363 (810)
T ss_dssp HHHTTTHHHHHHH-HHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTT
T ss_pred HHhccchHHHHHH-HhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence 0 2345666665 445678889999999999986554444455544445577777788888898888877777542210
Q ss_pred ccc-ccccchhhhhhhhhhHHHHHHhcCc---hHHHHHHHHHHhCCCh----HHHHHhhcccccchhhhcccc-Ch-hHH
Q 000134 315 GGC-ELLVSKAVLICNELFDYLSVRLASR---PIMVREFAEAAFGVET----EELVKKMIPAVLPKLVVSQQD-ND-QAV 384 (2096)
Q Consensus 315 ~~~-~l~~~~~~~~~~~l~~~~~~~l~~r---p~~~~~~~e~llg~~~----~~fL~~~~~~~LP~LVl~~~~-~~-~~~ 384 (2096)
.+. .-+.... + ..+.+.+++-|.+. +...+.-++.|.-++. .+-+.. ..-++|.||-.-+. |. ..-
T Consensus 364 d~~~~~~~~g~--i-~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~-d~g~Ip~LV~LL~s~d~~i~~ 439 (810)
T 3now_A 364 DAAIRPFGDGA--A-LKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIE-DKASIHALMDLARGGNQSCLY 439 (810)
T ss_dssp TTSCCSSTTTH--H-HHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHH-CHHHHHHHHHHHHTTCGGGHH
T ss_pred Cccccchhhcc--H-HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHH-ccchHHHHHHHhCCCChHHHH
Confidence 000 0111111 1 23344455555543 3333333333222222 222221 23478888864221 21 122
Q ss_pred HHHHHHHHHcCCC-----------------------------------chhHHhhhHHHHHHHHhccccH---HHHHHHH
Q 000134 385 NIINELAKCLNTD-----------------------------------MVPLIVTWIPKVLAFALHQADE---RRLLSAL 426 (2096)
Q Consensus 385 ~~i~~ia~~~~~~-----------------------------------~~~l~~~~~~~Ila~ll~~~~~---~~~~~~l 426 (2096)
..+..|++....+ .+.++....-..|..++...++ +++..+|
T Consensus 440 ~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL 519 (810)
T 3now_A 440 GVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVL 519 (810)
T ss_dssp HHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3344444433311 0223333445566667766554 4555666
Q ss_pred HHHhhhcCCChHHHHH-HhhHHHHHHHHHhhcCCCchhHhhhhcchhHHHHHHhhhccCCCChhhhhHHHHHHHHHHhhh
Q 000134 427 EFYCIQTGSDNQEIFA-AALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDR 505 (2096)
Q Consensus 427 ~~~~~~~~~~~~~~~~-~~~~~~l~eLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~ 505 (2096)
.-+..... .-+.++. ..+|.++ +|+ ..++. +.+ + .+..++..++ .+.++-..|-.....|.+..+-.
T Consensus 520 ~NLA~d~~-~r~~Vv~~Gaip~Lv-~LL---~s~~~-~~k-~--~Aa~AL~nL~---~~~~p~~~~~~~~~~~aIppLv~ 587 (810)
T 3now_A 520 NAVCGLKE-LRGKVVQEGGVKALL-RMA---LEGTE-KGK-R--HATQALARIG---ITINPEVSFSGQRSLDVIRPLLN 587 (810)
T ss_dssp HHHHTSHH-HHHHHHHTTHHHHHH-HHH---HSSCH-HHH-H--HHHHHHHHHH---HHSCHHHHTTTHHHHHTHHHHHH
T ss_pred HHHcCCHH-HHHHHHHCCCHHHHH-HHH---ccCCH-HHH-H--HHHHHHHHHh---cCCChhhhhcchhhhcHHHHHHH
Confidence 55543211 2233344 3456555 443 33332 222 1 1234444333 22222112212234566665554
Q ss_pred hhcCCC-ChHHHHHHHHHHHHHHHHh---ccc-c-ccchhhHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCCcchhh
Q 000134 506 KMLHAE-DLSLQKQALKRIEILIEMI---GSH-L-TTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKH 579 (2096)
Q Consensus 506 ~l~~~~-~~~~k~~~l~sl~~li~l~---g~~-v-~~~~pqI~a~L~~aL~~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ 579 (2096)
+++++ +...+..++.+|..|...- ... + ..+.|++..+|.+. .+.++..|+.+...++.. ++....
T Consensus 588 -LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~--~~~Vq~~A~~~L~NLa~~-----~~~~~~ 659 (810)
T 3now_A 588 -LLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED--HLYLTRAAAQCLCNLVMS-----EDVIKM 659 (810)
T ss_dssp -TTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC--CTTHHHHHHHHHHHHTTS-----HHHHHH
T ss_pred -HhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhCC-----hHHHHH
Confidence 34433 4444566777777654321 111 1 24679999988863 677888888877666542 223333
Q ss_pred HH--HHHHHHhhhccccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCChhhhHHHHHHHHHhcCCCCHHHHH
Q 000134 580 VI--SQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQL 657 (2096)
Q Consensus 580 ll--~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~l~~v~~~l~~~r~~~~l~~~l 657 (2096)
++ ...+..|+.+++.. ...+++.|...|..|-..+....+..+. . ..-+
T Consensus 660 ~v~~~g~l~~Lv~LL~s~---d~~vq~~Aa~ALanLt~~s~~~~~~ii~-------------------~-------~g~I 710 (810)
T 3now_A 660 FEGNNDRVKFLALLCEDE---DEETATACAGALAIITSVSVKCCEKILA-------------------I-------ASWL 710 (810)
T ss_dssp HHSSSSHHHHHHHGGGCS---SHHHHHHHHHHHHHHHHHCHHHHHHHHT-------------------S-------TTHH
T ss_pred HHhccCcHHHHHHHhcCC---CHHHHHHHHHHHHHHhCCCHHHHHHHHH-------------------H-------cCCH
Confidence 33 23566777777643 2346777888888876544433321111 0 0123
Q ss_pred HHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhc
Q 000134 658 LAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLG 737 (2096)
Q Consensus 658 ~~~~~~l~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG 737 (2096)
..+++-+.+.+..|+..|+.-|..+.....+....++.. +++..|+.- |. ..+ ..+.+|...+.+||-
T Consensus 711 ~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~------G~i~~L~~L-L~---~~d--~~~~~i~e~Al~aL~ 778 (810)
T 3now_A 711 DILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFET------DIMELLSGL-GQ---LPD--DTRAKAREVATQCLA 778 (810)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTS------THHHHHTTS-CC---CTT--STTHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHC------CCHHHHHHH-Hh---Ccc--cCcHHHHHHHHHHHH
Confidence 344566678999999999999999988655433333221 344433332 22 111 013577777777764
Q ss_pred ---ccCccCccc
Q 000134 738 ---ALGAVDPAK 746 (2096)
Q Consensus 738 ---~IGalDp~r 746 (2096)
..|.+||+.
T Consensus 779 ~ll~~g~~~~~~ 790 (810)
T 3now_A 779 AAERYRIIERSD 790 (810)
T ss_dssp HHHHHHTC----
T ss_pred HHHhCCCccCCC
Confidence 568888866
No 70
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=96.28 E-value=0.36 Score=59.81 Aligned_cols=60 Identities=10% Similarity=0.117 Sum_probs=49.0
Q ss_pred HhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccC-hHHHHHHhhhhhccChhhh
Q 000134 1123 SNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCH-LQAMVTHVDGLISRIPQYK 1182 (2096)
Q Consensus 1123 ~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq-~~~ll~~~~gl~~~~p~~~ 1182 (2096)
.+.+.|++++|+.+|+++++..|++......+-.|+..+|+ ++..+...+..+...|+..
T Consensus 106 ~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~ 166 (382)
T 2h6f_A 106 VLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY 166 (382)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH
Confidence 35678999999999999999999999888888889999997 9888777766555555443
No 71
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=96.24 E-value=2.4 Score=57.54 Aligned_cols=149 Identities=7% Similarity=0.038 Sum_probs=87.9
Q ss_pred HHHHHhhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhh-cccHHHHHHHHHHHhHhhhhh-hhhhhc
Q 000134 150 NIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLL-NKRKAIRDAFCTQIGYFLQDT-VLSSLF 227 (2096)
Q Consensus 150 ~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~-~~~r~vR~a~~~~~~~~~~~~-~~~~~~ 227 (2096)
+.+.++|. ....+|+..++.+|..|..|......+.....-+..|-.+|. +.+..+|..++..+..+-.+. ....++
T Consensus 153 p~Lv~lL~-~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~ 231 (780)
T 2z6g_A 153 PELTKLLN-DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIF 231 (780)
T ss_dssp HHHHHHHH-CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHH
Confidence 33455554 345677888888888887765422111111122333223334 448999999999998853111 011111
Q ss_pred cCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhH--HHHHHHHHHhhCCCCcchHHHHHHHH
Q 000134 228 LDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHF--LFLLILLVEQLDNPHVTVRMNASRLI 305 (2096)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~--~~~l~~Li~~L~~~n~~v~~~A~~~i 305 (2096)
. ...+..+.+.+ ...|+.+++..+.+++.|+.......+.+ .-++-.|++.|.+++.-++..|..-+
T Consensus 232 ~----------~g~I~~Lv~lL-~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL 300 (780)
T 2z6g_A 232 K----------SGGIPALVNML-GSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL 300 (780)
T ss_dssp H----------TTHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred H----------cCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1 12344555533 34578899999999999965422222222 12445688999999988888888888
Q ss_pred HHHhh
Q 000134 306 RKSCF 310 (2096)
Q Consensus 306 ~~l~~ 310 (2096)
..+|.
T Consensus 301 ~~La~ 305 (780)
T 2z6g_A 301 QILAY 305 (780)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 77765
No 72
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.23 E-value=0.43 Score=66.35 Aligned_cols=379 Identities=11% Similarity=0.067 Sum_probs=194.2
Q ss_pred HHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhccc-HHHHHHHHHHHhHhhhhhhhhhhccCccc----ccchhhHHH
Q 000134 167 SCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKR-KAIRDAFCTQIGYFLQDTVLSSLFLDENA----SSRSNELKL 241 (2096)
Q Consensus 167 ~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~-r~vR~a~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 241 (2096)
.++..+.+.+.|...|+-.-+...|...+..+-..+. ..++..+...++.+++.-+--..|...+. .+...+..|
T Consensus 332 ~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F 411 (980)
T 3ibv_A 332 NLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEF 411 (980)
T ss_dssp HTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHH
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHH
Confidence 3788888889998877766688889877665532221 12334444444444322122222433222 122444666
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHH----HHHHHH-HhhC---CCCcchHHHHHHHHHHHhhhhc
Q 000134 242 LDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLF----LLILLV-EQLD---NPHVTVRMNASRLIRKSCFFHL 313 (2096)
Q Consensus 242 ~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~----~l~~Li-~~L~---~~n~~v~~~A~~~i~~l~~~~~ 313 (2096)
.+.+++ +. +++-+++.+ ++++..- .+--++ ..|. +++=-..-.|.-.+..+++...
T Consensus 412 ~e~Rk~---------l~-~l~d~~~~l------~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~ 475 (980)
T 3ibv_A 412 QEMRKK---------LK-IFQDTINSI------DSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLR 475 (980)
T ss_dssp HHHHHH---------HH-HHHHHHHHH------CHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHH---------HH-HHHHHHHhc------ChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhcc
Confidence 664444 55 677777666 2333322 233333 3343 2223334555556666666554
Q ss_pred ccccccccchhhhhhhhhhHHHHHHh------cCchHHHHHHHHHHhCCChHHHHHh---hcccccchhhh-----cccc
Q 000134 314 KGGCELLVSKAVLICNELFDYLSVRL------ASRPIMVREFAEAAFGVETEELVKK---MIPAVLPKLVV-----SQQD 379 (2096)
Q Consensus 314 ~~~~~l~~~~~~~~~~~l~~~~~~~l------~~rp~~~~~~~e~llg~~~~~fL~~---~~~~~LP~LVl-----~~~~ 379 (2096)
..+... .......++|.++++.-+ ..+|..-...|+ ++| .+.+++.. ..+.+|+.++- .+..
T Consensus 476 ~~~~~~--~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~-~l~-rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~ 551 (980)
T 3ibv_A 476 GPDAFF--NEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYME-ILV-RYASFFDYESAAIPALIEYFVGPRGIHNTNE 551 (980)
T ss_dssp SGGGTB--CSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHH-HHH-HTGGGGGTCCTTHHHHHHHHTSTTTTTCCCT
T ss_pred cccccc--CcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHH-HHH-HHHHHHhcCchhHHHHHHHHhccccccCCCh
Confidence 322222 111111245666666544 578888777776 665 44455432 23344555443 1211
Q ss_pred Chh--HHHHHHHHHHHcCCCchhHHhhhHHHHHHHH---hcc-----ccH-------------------HHHHHHHHHHh
Q 000134 380 NDQ--AVNIINELAKCLNTDMVPLIVTWIPKVLAFA---LHQ-----ADE-------------------RRLLSALEFYC 430 (2096)
Q Consensus 380 ~~~--~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~l---l~~-----~~~-------------------~~~~~~l~~~~ 430 (2096)
... +...+..+++..+..+. ++++.|+..+ |.- .+. -.+.+++..+.
T Consensus 552 ~V~~~a~~af~~f~~~~~~~L~----~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li 627 (980)
T 3ibv_A 552 RVRPRAWYLFYRFVKSIKKQVV----NYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLI 627 (980)
T ss_dssp TTHHHHHHHHHHHHHHTTTTCS----SSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhHHhh----hHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHH
Confidence 111 44788888888886654 4555566654 331 111 12678888777
Q ss_pred hhcCCCh---HHHHHHhhHHHHHHHHHhhcCCCch-hHhhhhcchhHHHHHHhhhccCC-CChhhhhHHHHHHHHHHhhh
Q 000134 431 IQTGSDN---QEIFAAALPALLDELICFVDGGDSD-EINERLNRVPRVIRKVSTVLTGN-EDLPGFLRNHFVGLLNSIDR 505 (2096)
Q Consensus 431 ~~~~~~~---~~~~~~~~~~~l~eLl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fl~~~~LGil~~~~~ 505 (2096)
...+.+. .+.+...++.++..+-..+.....+ +.......+--++..+++-+.+. ..... ....|.-++..+-.
T Consensus 628 ~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p-~~~~f~~~~~~il~ 706 (980)
T 3ibv_A 628 SSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVA-WLASFNKASDEIFL 706 (980)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCS-HHHHHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCc-HHHHHHHHHHHHHH
Confidence 6655433 3445566666665554333222211 11101111223334444433221 11111 22333333333322
Q ss_pred hhcC-CCChHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHhcCCCcchhhhHHHHHHHHHhcc
Q 000134 506 KMLH-AEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSR 571 (2096)
Q Consensus 506 ~l~~-~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL~~~~L~~~~l~~W~~fv~~L~~ 571 (2096)
.+.. +++...+.++..++..||..+|.++.+++|+++..|.+..+..++.+ -+..-..+|+....
T Consensus 707 ~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~~~e~~~-fL~l~~qli~~f~~ 772 (980)
T 3ibv_A 707 ILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSIDMNELVD-VLSFISQLIHIYKD 772 (980)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHHCCTTTHHH-HHHHHHHHHHHTTT
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHHHHHHHH
Confidence 2211 23566788899999999999999999999999999997666555322 23444446666653
No 73
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=96.23 E-value=0.16 Score=57.40 Aligned_cols=152 Identities=9% Similarity=0.003 Sum_probs=112.1
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH--hccCC----hh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----LQ 1118 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~--~~~~s----l~ 1118 (2096)
.++......+.|..|+-+++..+..... ....+..|..+|...++++........ ...+. ..
T Consensus 42 ~~a~~~~~~~~~~~A~~~~~~al~~~~~------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 109 (252)
T 2ho1_A 42 QLGLGYLQRGNTEQAKVPLRKALEIDPS------------SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLN 109 (252)
T ss_dssp HHHHHHHHTTCTGGGHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCC------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHH
Confidence 6788889999999999999998764211 124567889999999999988887642 11221 12
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHHc--cCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhc
Q 000134 1119 DELLSNKKSGNWAEVFTSCEQALQ--MEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRL 1196 (2096)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq--~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrl 1196 (2096)
.....+...|+|++|..+|+.+++ ..|.+......+-.|+...|+++....+.+......|.... .......+....
T Consensus 110 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~la~~~~~~ 188 (252)
T 2ho1_A 110 NYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPS-VALEMADLLYKE 188 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH-HHHHHHHHHHHT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHH-HHHHHHHHHHHc
Confidence 244567899999999999999999 77888888888889999999999888877765554443322 223345667889
Q ss_pred CChhhHHHhhccc
Q 000134 1197 GRWDLMDEYLSGA 1209 (2096)
Q Consensus 1197 g~Wd~l~~~l~~~ 1209 (2096)
|+|+.-.+++...
T Consensus 189 g~~~~A~~~~~~~ 201 (252)
T 2ho1_A 189 REYVPARQYYDLF 201 (252)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9998877766553
No 74
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=96.15 E-value=0.055 Score=60.57 Aligned_cols=188 Identities=9% Similarity=-0.028 Sum_probs=114.8
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH--hccCC----
Q 000134 1043 KVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS---- 1116 (2096)
Q Consensus 1043 ~~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~--~~~~s---- 1116 (2096)
...+|....+.+.|..|+-+++..+... |. ....+..+..+|...++++........ ...+.
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 93 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEEN-----KE-------DAIPYINFANLLSSVNELERALAFYDKALELDSSAATA 93 (243)
T ss_dssp ----------------CCTTHHHHHTTC-----TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhC-----cc-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHH
Confidence 4467888899999999999999987632 11 134567889999999999988877642 11221
Q ss_pred hhHHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhc
Q 000134 1117 LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRL 1196 (2096)
Q Consensus 1117 l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrl 1196 (2096)
.......+...|+|++|..+|+++++..|++......+-.|+...|+++....+.+......|+... .......+....
T Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~ 172 (243)
T 2q7f_A 94 YYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTE-ARFQFGMCLANE 172 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHH-HHHHHHHHHHHc
Confidence 1224456789999999999999999999999888888899999999999888877766555554322 223345667789
Q ss_pred CChhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHH
Q 000134 1197 GRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVS 1251 (2096)
Q Consensus 1197 g~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~a 1251 (2096)
|+|+.-.+++...-.. .+........+|.++ ...++..+..+.++++
T Consensus 173 ~~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~--~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 173 GMLDEALSQFAAVTEQ------DPGHADAFYNAGVTY--AYKENREKALEMLDKA 219 (243)
T ss_dssp TCCHHHHHHHHHHHHH------CTTCHHHHHHHHHHH--HHTTCTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh------CcccHHHHHHHHHHH--HHccCHHHHHHHHHHH
Confidence 9998877766543221 011122333444443 4456666555555443
No 75
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=96.14 E-value=1.6 Score=55.94 Aligned_cols=107 Identities=7% Similarity=0.006 Sum_probs=73.0
Q ss_pred HHHHHhhcccHHHHHHHHHHHhHhh---hhhhhhhhccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHh
Q 000134 194 CIEFLLLNKRKAIRDAFCTQIGYFL---QDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMM 270 (2096)
Q Consensus 194 ~~~~~~~~~~r~vR~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~ 270 (2096)
.|..+ .+.|..++..+...++.++ .|+-++.+...| .+-.+-+.|...+++.+|+-..-+++.|..
T Consensus 62 ~v~~l-~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G----------~ip~LV~lL~~~~~~~lq~~Aa~aL~nias 130 (510)
T 3ul1_B 62 IVKGI-NSNNLESQLQATQAARKLLSREKQPPIDNIIRAG----------LIPKFVSFLGKTDCSPIQFESAWALTNIAS 130 (510)
T ss_dssp HHHHH-TSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTT----------HHHHHHHHTTCTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHh-cCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCC----------CHHHHHHHHCCCCCHHHHHHHHHHHHHHhc
Confidence 44445 9999999999999998876 222222222222 355666666677889999988888888843
Q ss_pred hhcccchhHH--HHHHHHHHhhCCCCcchHHHHHHHHHHHhhh
Q 000134 271 AVDVHSQHFL--FLLILLVEQLDNPHVTVRMNASRLIRKSCFF 311 (2096)
Q Consensus 271 ~~~~~~e~~~--~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~ 311 (2096)
+.+.+...+. -++=.||..|.++++-|+-.|..-+.++|..
T Consensus 131 ~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d 173 (510)
T 3ul1_B 131 GTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD 173 (510)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 2222222221 1344689999999999999999999999754
No 76
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=96.13 E-value=0.28 Score=59.87 Aligned_cols=64 Identities=13% Similarity=0.020 Sum_probs=53.1
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CC----ChHHHHHHHHHHHcCCchHHHHHHHHHhhc
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQAS----GA----PNVHMEKAKLLWSTRRSDGAIAELQQNLLN 1410 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~----~~----~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~ 1410 (2096)
.....|...|.+..+.|+++.|...+.++... +. ..+....|+++...|+..+|+..+++++.-
T Consensus 301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 301 VEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34667889999999999999999988887654 22 236778899999999999999999998763
No 77
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=96.11 E-value=0.56 Score=53.39 Aligned_cols=152 Identities=13% Similarity=0.037 Sum_probs=113.7
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH-hcc---CCh---
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL-HKS---LSL--- 1117 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~-~~~---~sl--- 1117 (2096)
..|...+..|.|..|+-+++..+...+. ....+..|..+|..+++++........ ... +..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 75 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYN------------SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSA 75 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCC------------CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCC------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHH
Confidence 4678888999999999999998764321 113567888999999999987777542 221 122
Q ss_pred --hHHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHh
Q 000134 1118 --QDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWR 1195 (2096)
Q Consensus 1118 --~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWr 1195 (2096)
......+...|++++|..+|+++++..|++......+-.|+..+|+++..+.+.+......|.....+..++ ...+.
T Consensus 76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~-~~~~~ 154 (272)
T 3u4t_A 76 DFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELG-QAYYY 154 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHH-HHHHH
Confidence 345667899999999999999999999999988889999999999999998888876666665444333333 14566
Q ss_pred cCChhhHHHhhccc
Q 000134 1196 LGRWDLMDEYLSGA 1209 (2096)
Q Consensus 1196 lg~Wd~l~~~l~~~ 1209 (2096)
.++|+.-.+++...
T Consensus 155 ~~~~~~A~~~~~~a 168 (272)
T 3u4t_A 155 NKEYVKADSSFVKV 168 (272)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67887776665543
No 78
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=96.05 E-value=6 Score=53.57 Aligned_cols=149 Identities=12% Similarity=0.066 Sum_probs=87.9
Q ss_pred HHHHHHHhhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhc
Q 000134 148 LLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLF 227 (2096)
Q Consensus 148 ~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~ 227 (2096)
..+.+.+.|-.+ +++++-++...|+.+ .+..+. .+-|-.-+ .+|.+++..||+.+..++..+-.+.--...+
T Consensus 116 ~i~~lv~~L~~~-~~~~r~~a~~~l~~~-----~~~~i~-~g~ip~Lv-~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i 187 (780)
T 2z6g_A 116 AHPTNVQRLAEP-SQMLKHAVVNLINYQ-----DDAELA-TRAIPELT-KLLNDEDQVVVNKAAVMVHQLSKKEASRHAI 187 (780)
T ss_dssp ----------CC-SCHHHHHHHHHHHHH-----HHHHHH-HHHHHHHH-HHHHCSCHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred cHHHHHHHhcCc-cHHHHHHHHHHHHhh-----hHHHHH-hCCHHHHH-HHHCCCCHHHHHHHHHHHHHHhCCChhHHHH
Confidence 334455666554 667887777766643 122222 22333333 3458999999999999998864211100000
Q ss_pred cCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHH-HHHHHHHHhhCCCCcchHHHHHHHHH
Q 000134 228 LDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFL-FLLILLVEQLDNPHVTVRMNASRLIR 306 (2096)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~-~~l~~Li~~L~~~n~~v~~~A~~~i~ 306 (2096)
. ....++..+-+.+...+|+.+++....++..+.........+.. -++-.|++.|.++++-++..|..-|.
T Consensus 188 ~--------~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~ 259 (780)
T 2z6g_A 188 M--------RSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLH 259 (780)
T ss_dssp T--------TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred H--------hccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 0 01246667777776677999999999999887432211111221 13445899999999999999999999
Q ss_pred HHhhhh
Q 000134 307 KSCFFH 312 (2096)
Q Consensus 307 ~l~~~~ 312 (2096)
++|...
T Consensus 260 nLa~~~ 265 (780)
T 2z6g_A 260 NLLLHQ 265 (780)
T ss_dssp HHHHHS
T ss_pred HHhCCC
Confidence 998764
No 79
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=96.00 E-value=0.31 Score=53.38 Aligned_cols=151 Identities=16% Similarity=0.111 Sum_probs=107.4
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH--hccCC----hh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----LQ 1118 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~--~~~~s----l~ 1118 (2096)
.++......|.|..|+.+++..+...+. ....+..+..+|...++.+........ ...+. ..
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 80 (225)
T 2vq2_A 13 QLAMEYMRGQDYRQATASIEDALKSDPK------------NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINN 80 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhCcc------------chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHH
Confidence 5788889999999999999998764321 124567888999999998887776542 11221 12
Q ss_pred HHHHHhHhh-cCHHHHHHHHHHHHc--cCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHh
Q 000134 1119 DELLSNKKS-GNWAEVFTSCEQALQ--MEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWR 1195 (2096)
Q Consensus 1119 ~qil~~E~~-G~W~~A~~~YE~~Lq--~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWr 1195 (2096)
.....+... |+|++|..+|+.+++ ..|.+......+-.|+...|+++....+.+......|+.... ......+.+.
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~la~~~~~ 159 (225)
T 2vq2_A 81 NYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPA-FKELARTKML 159 (225)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH-HHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchH-HHHHHHHHHH
Confidence 244567788 999999999999998 566666777788889999999998877777655555543222 2234566778
Q ss_pred cCChhhHHHhhcc
Q 000134 1196 LGRWDLMDEYLSG 1208 (2096)
Q Consensus 1196 lg~Wd~l~~~l~~ 1208 (2096)
.|+|+.-.+++..
T Consensus 160 ~~~~~~A~~~~~~ 172 (225)
T 2vq2_A 160 AGQLGDADYYFKK 172 (225)
T ss_dssp HTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 8998876665544
No 80
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=95.96 E-value=4.1 Score=53.30 Aligned_cols=185 Identities=10% Similarity=0.094 Sum_probs=107.4
Q ss_pred cCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhh
Q 000134 159 ESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNE 238 (2096)
Q Consensus 159 ~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (2096)
.+...|+...++.|.+|- ..++. ......|..++.|++..||.+|+..+..+.+ .. .+.-..
T Consensus 97 ~~n~~ir~~AL~~L~~i~---~~~~~----~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~---------~~--p~~~~~ 158 (591)
T 2vgl_B 97 DPNPLIRALAVRTMGCIR---VDKIT----EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHD---------IN--AQMVED 158 (591)
T ss_dssp SSSHHHHHHHHHHHHTCC---SGGGH----HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHH---------SS--CCCHHH
T ss_pred CCCHHHHHHHHHHHHcCC---hHHHH----HHHHHHHHHHcCCCChHHHHHHHHHHHHHHh---------hC--hhhccc
Confidence 455667777777777663 33321 1122345556799999999999999998652 11 222222
Q ss_pred HHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhccc--chhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccc
Q 000134 239 LKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVH--SQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGG 316 (2096)
Q Consensus 239 ~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~--~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~ 316 (2096)
..++..+.+.+. -+|+.|+...+.++++|+...... -.+..-.+-.|+..|..+++..+....+.+..++. ..
T Consensus 159 ~~~~~~l~~lL~-d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~---~~- 233 (591)
T 2vgl_B 159 QGFLDSLRDLIA-DSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNP---KD- 233 (591)
T ss_dssp HHHHHHHHHTTS-CSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCC---CS-
T ss_pred ccHHHHHHHHhC-CCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCC---CC-
Confidence 468889999775 578899999999999995432111 12233345667777778888877666554433321 10
Q ss_pred cccccchhhhhhhhhhHHHHHHhcCc-hHHHHHHHHHHhCCC-----hHHHHHhhcccccchhh
Q 000134 317 CELLVSKAVLICNELFDYLSVRLASR-PIMVREFAEAAFGVE-----TEELVKKMIPAVLPKLV 374 (2096)
Q Consensus 317 ~~l~~~~~~~~~~~l~~~~~~~l~~r-p~~~~~~~e~llg~~-----~~~fL~~~~~~~LP~LV 374 (2096)
... ...+.+++...+.+. |.+..+-+..+..+. ..+.+.....-+.|.||
T Consensus 234 -------~~~-~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~ 289 (591)
T 2vgl_B 234 -------DRE-AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLV 289 (591)
T ss_dssp -------HHH-HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHH
T ss_pred -------hHH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 011 234556666656543 444455454344432 12444444444556555
No 81
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=95.96 E-value=0.13 Score=50.92 Aligned_cols=116 Identities=11% Similarity=0.024 Sum_probs=92.9
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000134 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2096)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~ 1423 (2096)
......|...|......|.++.|...+.++.... .+.+....|.++...|+..+|+..+++++...|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---------- 78 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA---------- 78 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc----------
Confidence 4557789999999999999999999999987764 3567788999999999999999999998762110
Q ss_pred ccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHH
Q 000134 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDD 1499 (2096)
Q Consensus 1424 ~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~ 1499 (2096)
.+.++..+|......|+ .++.++.|.++++..|....+++.+|..+.+
T Consensus 79 --------------------------~~~~~~~~~~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 126 (131)
T 2vyi_A 79 --------------------------YSKAYGRMGLALSSLNK--HVEAVAYYKKALELDPDNETYKSNLKIAELK 126 (131)
T ss_dssp --------------------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred --------------------------CHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 03356666666665554 7889999999999999888889888887653
No 82
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=95.90 E-value=0.17 Score=58.92 Aligned_cols=62 Identities=15% Similarity=0.051 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CC----ChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQAS----GA----PNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~all~a~~~----~~----~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
....|...|.+..+.|.++.|...+.+|... +. ..+....|++++..|+..+|+..+++++.
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 262 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3567888999999999999999988877544 33 23666789999999999999999999876
No 83
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=95.86 E-value=0.14 Score=55.29 Aligned_cols=136 Identities=14% Similarity=0.179 Sum_probs=105.1
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~ 1424 (2096)
.....|...|.+..+.|.++.|...+.++.... .+.+....+...+..++...|+..+++++...|.
T Consensus 37 ~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~----------- 105 (184)
T 3vtx_A 37 NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTV----------- 105 (184)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----------
Confidence 346789999999999999999999999987764 4567788899999999999999999988753210
Q ss_pred cccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHH
Q 000134 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDA 1504 (2096)
Q Consensus 1425 ~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~~ 1504 (2096)
...++..+|......|+ .++.++.|+++++.+|....+|+.+|..|.+.
T Consensus 106 -------------------------~~~~~~~lg~~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~---- 154 (184)
T 3vtx_A 106 -------------------------YADAYYKLGLVYDSMGE--HDKAIEAYEKTISIKPGFIRAYQSIGLAYEGK---- 154 (184)
T ss_dssp -------------------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----
T ss_pred -------------------------chHHHHHHHHHHHHhCC--chhHHHHHHHHHHhcchhhhHHHHHHHHHHHC----
Confidence 02345555665555554 78899999999999999999999999887432
Q ss_pred HhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcc
Q 000134 1505 RKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2096)
Q Consensus 1505 ~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~ 1542 (2096)
| -...|+.+|-+++...+++
T Consensus 155 ----------g--------~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 155 ----------G--------LRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp ----------T--------CHHHHHHHHHHHHHTTHHH
T ss_pred ----------C--------CHHHHHHHHHHHHhCCccC
Confidence 1 1236888888888876653
No 84
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=95.83 E-value=0.11 Score=50.44 Aligned_cols=112 Identities=10% Similarity=-0.062 Sum_probs=89.5
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccc
Q 000134 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSIT 1425 (2096)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~ 1425 (2096)
....|...+......|.++.|...+.++.... .+.+....|.+++..|+..+|+..++++++..|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------------ 70 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD------------ 70 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------------
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc------------
Confidence 35679999999999999999999999987764 4567888999999999999999999998763110
Q ss_pred ccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhh
Q 000134 1426 SLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497 (2096)
Q Consensus 1426 ~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~ 1497 (2096)
.+.++..+|......|+ .++..+.|+++++..|....+++.+|...
T Consensus 71 ------------------------~~~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 71 ------------------------WGKGYSRKAAALEFLNR--FEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp ------------------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred ------------------------cHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 03345666666555554 78889999999999999988888887653
No 85
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=95.82 E-value=0.94 Score=53.55 Aligned_cols=260 Identities=14% Similarity=0.106 Sum_probs=143.8
Q ss_pred HHHhHhhcCHHHHHHHHHHHHccCCCc-hhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCCh
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQMEPTS-VQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRW 1199 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~-~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~W 1199 (2096)
|...-+.|+.++|....+......|++ .+...-+.+++..+|+++.++...+.. ..|.. ..+ ..-.+..-..|++
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~--~~~~~-~a~-~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS--SAPEL-QAV-RMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT--SCHHH-HHH-HHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc--CChhH-HHH-HHHHHHHcCCCcH
Confidence 344568999999999998777777776 456677889999999999998877652 22211 111 1112333355666
Q ss_pred hhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHHHH-hh
Q 000134 1200 DLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVK-LH 1278 (2096)
Q Consensus 1200 d~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~k-LH 1278 (2096)
+.--+.+...-.. ...+.+..+...+|.++ +..++..+..+.+++ + .+.. ++-.+.. +.
T Consensus 82 ~~A~~~l~~ll~~----~~~P~~~~~~~~la~~~--~~~g~~~~Al~~l~~----------~---~~~~-~~~~l~~~~~ 141 (291)
T 3mkr_A 82 DAIVAELDREMSR----SVDVTNTTFLLMAASIY--FYDQNPDAALRTLHQ----------G---DSLE-CMAMTVQILL 141 (291)
T ss_dssp HHHHHHHHHHHHS----CCCCSCHHHHHHHHHHH--HHTTCHHHHHHHHTT----------C---CSHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhc----ccCCCCHHHHHHHHHHH--HHCCCHHHHHHHHhC----------C---CCHH-HHHHHHHHHH
Confidence 5443333321000 00112233444455443 455665544443322 1 1111 1111111 11
Q ss_pred hhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHHH
Q 000134 1279 LLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKL 1358 (2096)
Q Consensus 1279 ~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~Akl 1358 (2096)
.+.+.+++...+. +.. . ..|+. ....++..|+. +
T Consensus 142 ~~g~~~~A~~~l~--------------------~~~----~-~~p~~------------------~~~~l~~a~~~---l 175 (291)
T 3mkr_A 142 KLDRLDLARKELK--------------------KMQ----D-QDEDA------------------TLTQLATAWVS---L 175 (291)
T ss_dssp HTTCHHHHHHHHH--------------------HHH----H-HCTTC------------------HHHHHHHHHHH---H
T ss_pred HCCCHHHHHHHHH--------------------HHH----h-hCcCc------------------HHHHHHHHHHH---H
Confidence 2222232222211 100 0 01110 00112334443 3
Q ss_pred HHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCC
Q 000134 1359 CRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLP 1436 (2096)
Q Consensus 1359 ARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1436 (2096)
....|+++.|...+.++....+ +.+....|..+...|+..+|+..+++++...|.
T Consensus 176 ~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~----------------------- 232 (291)
T 3mkr_A 176 AAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG----------------------- 232 (291)
T ss_dssp HHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------------
T ss_pred HhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------------------
Confidence 4567899999999988877643 456677889999999999999999998863221
Q ss_pred cccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchH
Q 000134 1437 VLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWE 1487 (2096)
Q Consensus 1437 ~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~we 1487 (2096)
-+.++.-+|......|+ ..+.+.+.++++.+++|...
T Consensus 233 -------------~~~~l~~l~~~~~~~g~-~~eaa~~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 233 -------------HPETLINLVVLSQHLGK-PPEVTNRYLSQLKDAHRSHP 269 (291)
T ss_dssp -------------CHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHCTTCH
T ss_pred -------------CHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCCCh
Confidence 03345555655555665 34557788899999999764
No 86
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=95.81 E-value=0.14 Score=51.29 Aligned_cols=115 Identities=10% Similarity=0.077 Sum_probs=92.5
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000134 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2096)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~ 1423 (2096)
......|...|....+.|.++.|...+.++.... .+.+....|.++...|+..+|+..++++++..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---------- 82 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT---------- 82 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT----------
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----------
Confidence 4567889999999999999999999999998765 3567888999999999999999999998763110
Q ss_pred ccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhH
Q 000134 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCD 1498 (2096)
Q Consensus 1424 ~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d 1498 (2096)
.+.++..+|.-....|+ .++.++.|.++++..|....+++.+|..+.
T Consensus 83 --------------------------~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 83 --------------------------FIKGYTRKAAALEAMKD--YTKAMDVYQKALDLDSSCKEAADGYQRCMM 129 (133)
T ss_dssp --------------------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred --------------------------chHHHHHHHHHHHHHhh--HHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 13355566665555554 788899999999999999889988887764
No 87
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=95.80 E-value=0.12 Score=58.11 Aligned_cols=131 Identities=11% Similarity=0.032 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~ 1426 (2096)
...|...+....+.|+++.|...+.+|.... .+.+....|.++...|+..+|+..++++++-.|..
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~------------ 72 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY------------ 72 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------------
Confidence 4578999999999999999999999998775 45688899999999999999999999988632210
Q ss_pred cCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHhccchHHHHHHHHh
Q 000134 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYT-----------GQKQKEDVITLYSRVRELQPMWEKGYFYMAK 1495 (2096)
Q Consensus 1427 ~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~-----------~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~ 1495 (2096)
+.++..+|...... | ..++.+..|++|++++|....+|+.+|.
T Consensus 73 ------------------------~~a~~~lg~~~~~~~~~~~~~~~~~g--~~~~A~~~~~~al~~~P~~~~~~~~lg~ 126 (217)
T 2pl2_A 73 ------------------------LGGYMVLSEAYVALYRQAEDRERGKG--YLEQALSVLKDAERVNPRYAPLHLQRGL 126 (217)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHTCSSHHHHHH--HHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHhhhhhhhhccccc--CHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 22333333333333 3 2577889999999999999999999988
Q ss_pred hhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccC
Q 000134 1496 YCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRG 1539 (2096)
Q Consensus 1496 y~d~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g 1539 (2096)
.|... | -...++..|-+++...
T Consensus 127 ~~~~~--------------g--------~~~~A~~~~~~al~~~ 148 (217)
T 2pl2_A 127 VYALL--------------G--------ERDKAEASLKQALALE 148 (217)
T ss_dssp HHHHT--------------T--------CHHHHHHHHHHHHHHC
T ss_pred HHHHc--------------C--------ChHHHHHHHHHHHhcc
Confidence 76422 1 1135777777777665
No 88
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=95.67 E-value=0.018 Score=61.26 Aligned_cols=105 Identities=14% Similarity=0.086 Sum_probs=81.5
Q ss_pred HHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCC
Q 000134 1356 AKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLN 1433 (2096)
Q Consensus 1356 AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 1433 (2096)
+.+.|+.|.++.|..++.+|....+ +...+..|+++...|+..+|+..++++++-.|
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p--------------------- 62 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE--------------------- 62 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------------
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------------
Confidence 4456777888999999988876532 34567789999999999999999999886322
Q ss_pred CCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhH
Q 000134 1434 PLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCD 1498 (2096)
Q Consensus 1434 ~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d 1498 (2096)
..+.++..+|.-....|+ .++.+..|++|++++|+...+|+.+|..|-
T Consensus 63 ---------------~~~~a~~~lg~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 110 (150)
T 4ga2_A 63 ---------------RDPKAHRFLGLLYELEEN--TDKAVECYRRSVELNPTQKDLVLKIAELLC 110 (150)
T ss_dssp ---------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ---------------CCHHHHHHHHHHHHHcCc--hHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 114567777877766665 788999999999999999999999998764
No 89
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=95.66 E-value=13 Score=52.10 Aligned_cols=168 Identities=14% Similarity=0.109 Sum_probs=96.4
Q ss_pred ccchhhHHHHHHHHhcCC--C-cchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhc----c-ccCCCCchhhHHHH
Q 000134 535 TTYVPKILVLLMHAINKE--S-LQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPF----L-ERDKDNPSVLLNKV 606 (2096)
Q Consensus 535 ~~~~pqI~a~L~~aL~~~--~-L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~----~-~~~~~~~~~~~~~~ 606 (2096)
.++.|+++..+..-.... . -....+.+...++..+. +.+.+.+.+++..+... + +.+.+.| .+++..
T Consensus 750 ~~~~~~~l~~ll~~~~~~~~~~~~~~~l~l~~~ii~~~~----~~~~~~l~~i~~~l~~~~~~~i~~~~~~~p-d~~~~~ 824 (1049)
T 3m1i_C 750 KVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVG----HMIPQGVILILQSVFECTLDMINKDFTEYP-EHRVEF 824 (1049)
T ss_dssp HHTHHHHHHHHHHHHHHSCGGGCCTHHHHHHHHHHHHHG----GGCHHHHHHHHHHHHHHHHHHHSSCSSSSH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHH----HhhhhhHHHHHHHHHHHHHHHHhcchhhCH-HHHHHH
Confidence 355677776655443221 0 01458899999999886 35666666666665433 3 2333333 456667
Q ss_pred HHHHHHHHHHhHHHHHhhcccCCCCCChhhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhc
Q 000134 607 VKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLK 686 (2096)
Q Consensus 607 ~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~~l~~en~~Vr~~aL~eL~~~L~~~ 686 (2096)
..++..++..+...+.. +| |. .+..-+...+..+.|....+...|++-|..++...
T Consensus 825 f~ll~~i~~~~~~~l~~-------~~--~~---------------~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~ 880 (1049)
T 3m1i_C 825 YKLLKVINEKSFAAFLE-------LP--PA---------------AFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNI 880 (1049)
T ss_dssp HHHHHHHHHHCTHHHHH-------SC--HH---------------HHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHc-------CC--HH---------------HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH
Confidence 77777776665544421 11 11 12334556667888889999999999999988864
Q ss_pred HH----HHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhc
Q 000134 687 SE----DVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLG 737 (2096)
Q Consensus 687 ~~----~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG 737 (2096)
.. +.......... .+++..++..|.+.+.+..- +....+-.+.+.
T Consensus 881 ~~~~~~~~~~~f~~~~~--~~l~~~~~~~l~~~~h~s~~----~~~~~~l~~l~~ 929 (1049)
T 3m1i_C 881 ERMGNVPFANEFHKNYF--FIFVSETFFVLTDSDHKSGF----SKQALLLMKLIS 929 (1049)
T ss_dssp HHSCSCHHHHHHHHHHH--HHHHHHHHHHHHSTTCGGGH----HHHHHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHH--HHHHHHHHHHHhcchHhhhH----HHHHHHHHHHHH
Confidence 32 11111111000 15777888888888765432 344445555443
No 90
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=95.65 E-value=0.096 Score=58.54 Aligned_cols=113 Identities=17% Similarity=0.110 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHH----------------HHHHHHHcCCchHHHHHHHHHhhc
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHME----------------KAKLLWSTRRSDGAIAELQQNLLN 1410 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE----------------~AKLLW~~g~~~~Ai~~L~~~i~~ 1410 (2096)
.+.++.-+....+.|.++.|...+.++....+ +.+... .|..+...|+..+|+..++++++.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45688889999999999999999999887653 345555 899999999999999999998863
Q ss_pred CCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHH
Q 000134 1411 KPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGY 1490 (2096)
Q Consensus 1411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~ 1490 (2096)
.|. .+.++..+|.-....|+ .++.+..|+++++++|....+|
T Consensus 84 ~p~------------------------------------~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~P~~~~a~ 125 (208)
T 3urz_A 84 APN------------------------------------NVDCLEACAEMQVCRGQ--EKDALRMYEKILQLEADNLAAN 125 (208)
T ss_dssp CTT------------------------------------CHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCC------------------------------------CHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCHHHH
Confidence 221 13456667776666665 7889999999999999999999
Q ss_pred HHHHhhhHH
Q 000134 1491 FYMAKYCDD 1499 (2096)
Q Consensus 1491 ~~la~y~d~ 1499 (2096)
+.+|..|-.
T Consensus 126 ~~lg~~~~~ 134 (208)
T 3urz_A 126 IFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988743
No 91
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=95.59 E-value=1.7 Score=54.09 Aligned_cols=87 Identities=14% Similarity=0.043 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCccccccc
Q 000134 1366 ETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQT 1443 (2096)
Q Consensus 1366 ~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 1443 (2096)
+.|.....+|.... .+.+....|.++...|+..+|+..++++++..+
T Consensus 317 ~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~------------------------------- 365 (472)
T 4g1t_A 317 GHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL------------------------------- 365 (472)
T ss_dssp HHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC-------------------------------
T ss_pred HHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC-------------------------------
Confidence 33444444444333 233455566777777777777777777764211
Q ss_pred chhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccch
Q 000134 1444 LNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMW 1486 (2096)
Q Consensus 1444 ~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~w 1486 (2096)
.......++..+|..... .....++.+..|.+|+++.|+.
T Consensus 366 --~~~~~~~~~~~~~~~~~~-~~~~~~~Ai~~y~kal~i~~~~ 405 (472)
T 4g1t_A 366 --TPVAKQLLHLRYGNFQLY-QMKCEDKAIHHFIEGVKINQKS 405 (472)
T ss_dssp --CHHHHHHHHHHHHHHHHH-TSSCHHHHHHHHHHHHHSCCCC
T ss_pred --CChHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCccc
Confidence 001112345556655432 2345788889999999988763
No 92
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=95.58 E-value=0.41 Score=53.46 Aligned_cols=120 Identities=12% Similarity=0.055 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccccc
Q 000134 1350 NCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSL 1427 (2096)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~ 1427 (2096)
..|...+.+..+.|.++.|...+.+|....+ +.+....|.++...|+..+|+..++++++..|..
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------------- 109 (228)
T 4i17_A 43 VTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGN------------- 109 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------------
T ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-------------
Confidence 4677789999999999999999999988765 4578889999999999999999999988632210
Q ss_pred CCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc--hHHHHHHHHhhhHHH
Q 000134 1428 SLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM--WEKGYFYMAKYCDDV 1500 (2096)
Q Consensus 1428 ~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~--weK~~~~la~y~d~l 1500 (2096)
..-....+.++..+|......|+ .++.++.|++|++++|. ...+|+.+|..|-..
T Consensus 110 ----------------~~~~~~~~~~~~~~g~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 166 (228)
T 4i17_A 110 ----------------ATIEKLYAIYYLKEGQKFQQAGN--IEKAEENYKHATDVTSKKWKTDALYSLGVLFYNN 166 (228)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHhHHHHHhcc--HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 00122456788888988877765 89999999999999999 889999999987544
No 93
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=95.57 E-value=0.26 Score=55.42 Aligned_cols=136 Identities=14% Similarity=0.014 Sum_probs=107.5
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHc-----------CCchHHHHHHHHHhhcCC
Q 000134 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWST-----------RRSDGAIAELQQNLLNKP 1412 (2096)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~-----------g~~~~Ai~~L~~~i~~~~ 1412 (2096)
+.....|...+.+..+.|+++.|...+.+|....+ +.+....+.++... |+..+|+..++++++..|
T Consensus 36 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P 115 (217)
T 2pl2_A 36 PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP 115 (217)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc
Confidence 34567899999999999999999999999988754 45788889999999 999999999999876322
Q ss_pred cccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHH
Q 000134 1413 VEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFY 1492 (2096)
Q Consensus 1413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~ 1492 (2096)
..+.++..+|..+...|+ .++.+..|++|+++. ....+|+.
T Consensus 116 ------------------------------------~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~-~~~~~~~~ 156 (217)
T 2pl2_A 116 ------------------------------------RYAPLHLQRGLVYALLGE--RDKAEASLKQALALE-DTPEIRSA 156 (217)
T ss_dssp ------------------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHC-CCHHHHHH
T ss_pred ------------------------------------ccHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcc-cchHHHHH
Confidence 114466777777766665 789999999999999 88889999
Q ss_pred HHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcc
Q 000134 1493 MAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2096)
Q Consensus 1493 la~y~d~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~ 1542 (2096)
+|..|-..= -...++..|-+++...+.+
T Consensus 157 la~~~~~~g----------------------~~~~A~~~~~~al~~~P~~ 184 (217)
T 2pl2_A 157 LAELYLSMG----------------------RLDEALAQYAKALEQAPKD 184 (217)
T ss_dssp HHHHHHHHT----------------------CHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHcC----------------------CHHHHHHHHHHHHHhCCCC
Confidence 998764320 1235788888888877664
No 94
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=95.52 E-value=0.26 Score=48.32 Aligned_cols=113 Identities=16% Similarity=0.182 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccc
Q 000134 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSIT 1425 (2096)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~ 1425 (2096)
....|...+....+.|.++.|...+.++.... .+.+....|..+...|+..+|+..+++++...+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------------ 75 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------------ 75 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc------------
Confidence 36789999999999999999999999987764 3457788899999999999999999988752110
Q ss_pred ccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhH
Q 000134 1426 SLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCD 1498 (2096)
Q Consensus 1426 ~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d 1498 (2096)
...++..+|......|+ .++..+.|.++.+..|....+++.+|..+.
T Consensus 76 ------------------------~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 76 ------------------------NAEAWYNLGNAYYKQGD--YDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp ------------------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ------------------------cHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 02245555665555554 788899999999999998888888877653
No 95
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=95.49 E-value=0.16 Score=51.22 Aligned_cols=112 Identities=11% Similarity=-0.029 Sum_probs=87.3
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~ 1424 (2096)
+.+..|...+....+.|.++.|.....+|....+ +.+....|..+...|+..+|+..+++++...|
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p------------ 69 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP------------ 69 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC------------
Confidence 3467899999999999999999999999987753 56788899999999999999999999876321
Q ss_pred cccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc------cchHHHHHHHHhh
Q 000134 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQ------PMWEKGYFYMAKY 1496 (2096)
Q Consensus 1425 ~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~------~~weK~~~~la~y 1496 (2096)
..++++..+|.-....|+ .++.+..|+++++++ |.....+..+++-
T Consensus 70 ------------------------~~~~~~~~lg~~~~~~~~--~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 70 ------------------------NFVRAYIRKATAQIAVKE--YASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp ------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred ------------------------CcHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 013456666666655554 788899999999999 6666666555544
No 96
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=95.47 E-value=0.095 Score=55.83 Aligned_cols=113 Identities=9% Similarity=-0.022 Sum_probs=92.0
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccc
Q 000134 1345 GAEVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAIS 1422 (2096)
Q Consensus 1345 ~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~ 1422 (2096)
....+..|...+....+.|.++.|...+.+|.... .+.+....|..+...|+..+|+..+++++...|
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---------- 76 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP---------- 76 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----------
Confidence 34567889999999999999999999999998775 456788999999999999999999999876321
Q ss_pred cccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHh
Q 000134 1423 SITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAK 1495 (2096)
Q Consensus 1423 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~ 1495 (2096)
..+.++..+|.-....|+ .++.++.|+++++++|....+|+..|.
T Consensus 77 --------------------------~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 77 --------------------------KYSKAWSRLGLARFDMAD--YKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp --------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred --------------------------CCHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 014466777776666654 788999999999999998887776554
No 97
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=95.46 E-value=3.6 Score=54.30 Aligned_cols=105 Identities=13% Similarity=0.089 Sum_probs=68.8
Q ss_pred HHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchh---hHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhc
Q 000134 197 FLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSN---ELKLLDVIKLAFTAADDPLILETLLESTAELMMAVD 273 (2096)
Q Consensus 197 ~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~ 273 (2096)
.+|.+++..||..++..+..+-.+. ..+.. ...++..+-+.+...+|+.+++....++..+.....
T Consensus 21 ~lL~~~~~~vr~~A~~~L~~La~~~-----------~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~ 89 (644)
T 2z6h_A 21 KLLNDEDQVVVNKAAVMVHQLSKKE-----------ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE 89 (644)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHTST-----------THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHCCC-----------hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh
Confidence 3457888888988888888754111 11110 123455666666666788888888888887643221
Q ss_pred ccchhHH-HHHHHHHHhhCCCCcchHHHHHHHHHHHhhhh
Q 000134 274 VHSQHFL-FLLILLVEQLDNPHVTVRMNASRLIRKSCFFH 312 (2096)
Q Consensus 274 ~~~e~~~-~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~ 312 (2096)
....+.. -++-.|++.|.++++.++..|..-|.++|...
T Consensus 90 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~ 129 (644)
T 2z6h_A 90 GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ 129 (644)
T ss_dssp HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Confidence 1111111 13456899999999999999999999998764
No 98
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=95.45 E-value=0.22 Score=57.17 Aligned_cols=153 Identities=12% Similarity=0.103 Sum_probs=109.2
Q ss_pred ChhhHHHHHHHhhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhh
Q 000134 144 DFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVL 223 (2096)
Q Consensus 144 ~~~~~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~ 223 (2096)
+|.++-+.+.++|-+.....|+-+...+|..+.++...+. ..-....+.+|-..+.|++..||.+++.++..++++.
T Consensus 53 ~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~-~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~-- 129 (242)
T 2qk2_A 53 EYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRF-SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST-- 129 (242)
T ss_dssp CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGG-HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS--
T ss_pred CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC--
Confidence 3555666666666435677788899999999998766442 1111233445555569999999999999999987311
Q ss_pred hhhccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhc---ccchhHHHHHHHHHHhhCCCCcchHHH
Q 000134 224 SSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVD---VHSQHFLFLLILLVEQLDNPHVTVRMN 300 (2096)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~---~~~e~~~~~l~~Li~~L~~~n~~v~~~ 300 (2096)
.-..++..+..++.. ++|++++.++..++.+..... .....+...+=.|+..|..+++-||..
T Consensus 130 -------------~~~~ll~~l~~~l~~-~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~ 195 (242)
T 2qk2_A 130 -------------SLEAQQESIVESLSN-KNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDS 195 (242)
T ss_dssp -------------CHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred -------------CHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 124577788887764 689999999999999754431 122334444555999999999999999
Q ss_pred HHHHHHHHhhhhc
Q 000134 301 ASRLIRKSCFFHL 313 (2096)
Q Consensus 301 A~~~i~~l~~~~~ 313 (2096)
|..-|-.+++.-.
T Consensus 196 A~~~l~~l~~~vg 208 (242)
T 2qk2_A 196 SAEALGTLIKLMG 208 (242)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcC
Confidence 9999999977663
No 99
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=95.45 E-value=0.082 Score=62.79 Aligned_cols=147 Identities=13% Similarity=0.054 Sum_probs=109.3
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH--hccCChh-HH
Q 000134 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLSLQ-DE 1120 (2096)
Q Consensus 1044 ~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~--~~~~sl~-~q 1120 (2096)
..++....+-|.|..|+-+++. . . ..+.+-.+..+|..++++|........ ...++-. -+
T Consensus 105 ~~la~~~~~~g~~~~Al~~l~~-----~--~----------~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~ 167 (291)
T 3mkr_A 105 LMAASIYFYDQNPDAALRTLHQ-----G--D----------SLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQ 167 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTT-----C--C----------SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHhC-----C--C----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHH
Confidence 3678888999999999999876 1 0 124567889999999999998887653 1122211 11
Q ss_pred H-----HHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHh
Q 000134 1121 L-----LSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWR 1195 (2096)
Q Consensus 1121 i-----l~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWr 1195 (2096)
+ ..+...|++++|..+|+.+++..|++.....++-.|+..+|+|+......+..+...|+....+..+ ..+.+.
T Consensus 168 l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l-~~~~~~ 246 (291)
T 3mkr_A 168 LATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINL-VVLSQH 246 (291)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHH
Confidence 1 1223459999999999999999999999888999999999999999888887777667655555444 357788
Q ss_pred cCChhh-HHHhhcc
Q 000134 1196 LGRWDL-MDEYLSG 1208 (2096)
Q Consensus 1196 lg~Wd~-l~~~l~~ 1208 (2096)
+|+++. ..+++.+
T Consensus 247 ~g~~~eaa~~~~~~ 260 (291)
T 3mkr_A 247 LGKPPEVTNRYLSQ 260 (291)
T ss_dssp TTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHH
Confidence 999964 5556543
No 100
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=95.37 E-value=0.16 Score=53.69 Aligned_cols=150 Identities=10% Similarity=0.005 Sum_probs=109.1
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH--hccCC----hh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----LQ 1118 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~--~~~~s----l~ 1118 (2096)
.++......+.|..|+.+++..+... |. ....+..+..+|...++++........ ...++ ..
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 80 (186)
T 3as5_A 13 DKGISHAKAGRYSQAVMLLEQVYDAD-----AF-------DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVAT 80 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTTCCTT-----SC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-----cc-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 56788889999999999998765431 11 234567889999999999987777542 11221 12
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCC
Q 000134 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGR 1198 (2096)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~ 1198 (2096)
.....+...|+|++|..+|+.+++..|++......+-.|+...|+++....+.+......|+... .......+....|+
T Consensus 81 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~la~~~~~~~~ 159 (186)
T 3as5_A 81 VLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGK-VHRAIAFSYEQMGR 159 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchH-HHHHHHHHHHHcCC
Confidence 24456788999999999999999999999888888889999999999888877765555454322 22234556778888
Q ss_pred hhhHHHhhc
Q 000134 1199 WDLMDEYLS 1207 (2096)
Q Consensus 1199 Wd~l~~~l~ 1207 (2096)
|+.-.+++.
T Consensus 160 ~~~A~~~~~ 168 (186)
T 3as5_A 160 HEEALPHFK 168 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887665544
No 101
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=95.30 E-value=12 Score=49.37 Aligned_cols=130 Identities=11% Similarity=-0.033 Sum_probs=86.9
Q ss_pred ccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHH
Q 000134 161 SEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELK 240 (2096)
Q Consensus 161 ~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (2096)
.-+.+-.++-.+..+++..++..++ -+-++..-+.|++..+|-.|-+++..+-... --+.
T Consensus 87 ~~~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e---------------~~~~ 146 (621)
T 2vgl_A 87 RYTEKQIGYLFISVLVNSNSELIRL-----INNAIKNDLASRNPTFMGLALHCIANVGSRE---------------MAEA 146 (621)
T ss_dssp CHHHHHHHHHHHHHSCCCCHHHHHH-----HHHHHHHHHHSCCHHHHHHHHHHHHHHCCHH---------------HHHH
T ss_pred CHHHHHHHHHHHHHHccCCcHHHHH-----HHHHHHHhcCCCCHHHHHHHHHHhhccCCHH---------------HHHH
Confidence 3344444555555554433211111 2345666679999999999999999864211 1245
Q ss_pred HHHHHHHHhh-hcCChhHHHHHHHHHHHHHhhhcccchhHH--HHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhc
Q 000134 241 LLDVIKLAFT-AADDPLILETLLESTAELMMAVDVHSQHFL--FLLILLVEQLDNPHVTVRMNASRLIRKSCFFHL 313 (2096)
Q Consensus 241 ~~~~~~~~~~-~~~d~~i~eTll~~~~~i~~~~~~~~e~~~--~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~ 313 (2096)
++..+++.+. .-.+|-|.-+...++..+.+- ..|+.. -.+=.|.+.|+.+|+.|.+.|...+..+|....
T Consensus 147 l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~---~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~ 219 (621)
T 2vgl_A 147 FAGEIPKILVAGDTMDSVKQSAALCLLRLYRT---SPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNP 219 (621)
T ss_dssp HTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHH---CGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh---ChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhCh
Confidence 6667777663 356888999999999999662 344443 334556777889999999999999999988653
No 102
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.28 E-value=0.26 Score=50.32 Aligned_cols=113 Identities=17% Similarity=0.051 Sum_probs=89.7
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC-----ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccc
Q 000134 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA-----PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTA 1420 (2096)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~-----~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~ 1420 (2096)
......|...|..+.+.|.++.|...+.++....+ +.+....|..+...|+..+|+..++.++...|.
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------- 97 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG------- 97 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-------
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-------
Confidence 45678899999999999999999999999988764 456778899999999999999999998752110
Q ss_pred cccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhh
Q 000134 1421 ISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKY 1496 (2096)
Q Consensus 1421 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y 1496 (2096)
.+.++..+|.-....++ .++.++.|++++++.|.....+..+++.
T Consensus 98 -----------------------------~~~~~~~~a~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 98 -----------------------------DVKALYRRSQALEKLGR--LDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred -----------------------------CHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 03355666666555554 7888999999999999888777766554
No 103
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=95.25 E-value=0.2 Score=57.05 Aligned_cols=55 Identities=18% Similarity=0.098 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCChHHHHHHHHHHHcCCchHHHHHH
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWSTRRSDGAIAEL 1404 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~~~~~~iE~AKLLW~~g~~~~Ai~~L 1404 (2096)
...|...|.+..+.|+++.|...+.++....+.+ ..+.+..++..|+..+|+..+
T Consensus 215 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 215 SETNFYLGKYYLSLGDLDSATALFKLAVANNVHN-FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT-CHHHHHHHHHHHHHHHC----
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh-HHHHHHHHHHHHHHHhhHHHH
Confidence 5789999999999999999999999998775433 445577788888888888766
No 104
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=95.19 E-value=3.3 Score=54.51 Aligned_cols=106 Identities=15% Similarity=0.076 Sum_probs=66.2
Q ss_pred HHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhh
Q 000134 192 IKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMA 271 (2096)
Q Consensus 192 ~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~ 271 (2096)
+.-|..++.|++..||.+|+.++..+.... . ...+.++..+.+.+. -+||.|+-..+..+++|+..
T Consensus 144 ~~~l~~~L~~~~~~VRk~A~~al~~l~~~~-----------p--~~v~~~~~~l~~lL~-D~d~~V~~~Al~~L~~i~~~ 209 (618)
T 1w63_A 144 AGEVEKLLKTSNSYLRKKAALCAVHVIRKV-----------P--ELMEMFLPATKNLLN-EKNHGVLHTSVVLLTEMCER 209 (618)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-----------G--GGGGGGGGGTTTSTT-CCCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-----------h--HHHHHHHHHHHHHhC-CCCHhHHHHHHHHHHHHHHh
Confidence 345566679999999999999999875210 0 111356667777554 47888999999999998532
Q ss_pred hcccchhH---HHHHHHHHHhh------------CCCCcchHHHHHHHHHHHhhh
Q 000134 272 VDVHSQHF---LFLLILLVEQL------------DNPHVTVRMNASRLIRKSCFF 311 (2096)
Q Consensus 272 ~~~~~e~~---~~~l~~Li~~L------------~~~n~~v~~~A~~~i~~l~~~ 311 (2096)
.....+.+ .-.++.++..+ +.+++.+.....+.+..++..
T Consensus 210 ~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~ 264 (618)
T 1w63_A 210 SPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRN 264 (618)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCC
Confidence 11000111 11233344433 346788888877777777543
No 105
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=95.16 E-value=0.35 Score=54.03 Aligned_cols=133 Identities=11% Similarity=-0.021 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC---ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccc
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGA---PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSIT 1425 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~~---~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~ 1425 (2096)
...|...+....+.|.++.|.....++....+ +.+....|..+...|+..+|+..++++++..|
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------------- 73 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY------------- 73 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-------------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-------------
Confidence 46899999999999999999999999987764 34666789999999999999999999876321
Q ss_pred ccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHH-------HHHHHhhhH
Q 000134 1426 SLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKG-------YFYMAKYCD 1498 (2096)
Q Consensus 1426 ~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~-------~~~la~y~d 1498 (2096)
..+.++..+|.-....|+ .++.++.|++++++.|..... |+.+|..+.
T Consensus 74 -----------------------~~~~~~~~l~~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~ 128 (228)
T 4i17_A 74 -----------------------NLANAYIGKSAAYRDMKN--NQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQ 128 (228)
T ss_dssp -----------------------SHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------chHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHH
Confidence 124466677776665554 788999999999999987744 555554442
Q ss_pred HHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCc
Q 000134 1499 DVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHK 1541 (2096)
Q Consensus 1499 ~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~ 1541 (2096)
.. | -...|+..|-+++...+.
T Consensus 129 ~~--------------~--------~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 129 QA--------------G--------NIEKAEENYKHATDVTSK 149 (228)
T ss_dssp HT--------------T--------CHHHHHHHHHHHTTSSCH
T ss_pred Hh--------------c--------cHHHHHHHHHHHHhcCCC
Confidence 11 1 124699999999998766
No 106
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.11 E-value=17 Score=51.53 Aligned_cols=329 Identities=16% Similarity=0.122 Sum_probs=193.1
Q ss_pred HHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHH-HHHHHHhcCCChHHHHHHHHHhccCChhHHHHHhHh
Q 000134 1048 RASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVS-FLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSNKK 1126 (2096)
Q Consensus 1048 ~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~-~L~~IYa~LdEpDgl~Gi~~~~~~~sl~~qil~~E~ 1126 (2096)
++=+.-+.|..||-.+|.-+.+.+... ....++ .|+...-..|=..+++-+.+.- .....+-....++
T Consensus 993 Kaf~~aglp~EaieLLEKivl~~s~fs----------~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd-~~d~~eIA~Iai~ 1061 (1630)
T 1xi4_A 993 KAFMTADLPNELIELLEKIVLDNSVFS----------EHRNLQNLLILTAIKADRTRVMEYINRLD-NYDAPDIANIAIS 1061 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHHHcCCCccc----------ccHHHHHHHHHHHHHhChhhHHHHHHHhh-hccHHHHHHHHHh
Confidence 333477889999999998774422000 011222 2333333334455555555543 4455666677889
Q ss_pred hcCHHHHHHHHHHHHccCCCchhhhhhHHHHH-HhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChhhH-HH
Q 000134 1127 SGNWAEVFTSCEQALQMEPTSVQRHSDVLNCL-LNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLM-DE 1204 (2096)
Q Consensus 1127 ~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL-~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd~l-~~ 1204 (2096)
.|.+++|..+|+++- .... -+.-| .++|.|+....+++.... | ..|..+| .|-=..|+|+.- +.
T Consensus 1062 lglyEEAf~IYkKa~-----~~~~---A~~VLie~i~nldrAiE~Aervn~--p---~vWsqLA-KAql~~G~~kEAIds 1127 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFD-----VNTS---AVQVLIEHIGNLDRAYEFAERCNE--P---AVWSQLA-KAQLQKGMVKEAIDS 1127 (1630)
T ss_pred CCCHHHHHHHHHHcC-----CHHH---HHHHHHHHHhhHHHHHHHHHhcCC--H---HHHHHHH-HHHHhCCCHHHHHHH
Confidence 999999999999862 1111 12223 378999988888775421 2 3344332 233346788554 33
Q ss_pred hhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhh-HHhhhHHHHHhhhhhHH
Q 000134 1205 YLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDS-YTRAYPFIVKLHLLQEL 1283 (2096)
Q Consensus 1205 ~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eS-y~r~y~~l~kLH~L~EL 1283 (2096)
|.. ++ +.+....++.+ +.+.++.++.-+.+..+|...-.+- .++ ..-+ .-++..+.|+
T Consensus 1128 YiK-Ad-----------D~say~eVa~~--~~~lGkyEEAIeyL~mArk~~~e~~----Idt~Lafa---YAKl~rleel 1186 (1630)
T 1xi4_A 1128 YIK-AD-----------DPSSYMEVVQA--ANTSGNWEELVKYLQMARKKARESY----VETELIFA---LAKTNRLAEL 1186 (1630)
T ss_pred HHh-cC-----------ChHHHHHHHHH--HHHcCCHHHHHHHHHHHHhhccccc----ccHHHHHH---HHhhcCHHHH
Confidence 322 21 12333445544 3556777777788887776431110 111 1111 1233455566
Q ss_pred HHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHcC
Q 000134 1284 EDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAG 1363 (2096)
Q Consensus 1284 ee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~AklARKag 1363 (2096)
+++..- ... ..+. .|-.|+...+..-..... ..+ +..|.+.|+.--+.|
T Consensus 1187 e~fI~~------------~n~---ad~~-~iGd~le~eg~YeeA~~~---Y~k------------A~ny~rLA~tLvkLg 1235 (1630)
T 1xi4_A 1187 EEFING------------PNN---AHIQ-QVGDRCYDEKMYDAAKLL---YNN------------VSNFGRLASTLVHLG 1235 (1630)
T ss_pred HHHHhC------------CCH---HHHH-HHHHHHHhcCCHHHHHHH---HHh------------hhHHHHHHHHHHHhC
Confidence 655321 111 2233 477777766654333322 121 357999999999999
Q ss_pred ChHHHHHHHHHHhhcCCChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCccccccc
Q 000134 1364 HYETATRAILEAQASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQT 1443 (2096)
Q Consensus 1364 ~~~~A~~all~a~~~~~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 1443 (2096)
.++.|..+..+| +++.+..|.+-..-+.|+.+.|..+....+.+
T Consensus 1236 e~q~AIEaarKA---~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~--------------------------------- 1279 (1630)
T 1xi4_A 1236 EYQAAVDGARKA---NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH--------------------------------- 1279 (1630)
T ss_pred CHHHHHHHHHHh---CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcC---------------------------------
Confidence 999999999988 45566666666677788888888876542210
Q ss_pred chhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhH
Q 000134 1444 LNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCD 1498 (2096)
Q Consensus 1444 ~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d 1498 (2096)
+..+.-+++|....|. .+++++.|.++..+++.+.-.|..+|..|-
T Consensus 1280 -------~deLeeli~yYe~~G~--feEAI~LlE~aL~LeraH~gmftELaiLya 1325 (1630)
T 1xi4_A 1280 -------ADELEELINYYQDRGY--FEELITMLEAALGLERAHMGMFTELAILYS 1325 (1630)
T ss_pred -------HHHHHHHHHHHHHcCC--HHHHHHHHHHHhccChhHhHHHHHHHHHHH
Confidence 2223345666665665 789999999999999887777777766654
No 107
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=95.09 E-value=0.28 Score=57.13 Aligned_cols=183 Identities=11% Similarity=0.149 Sum_probs=113.2
Q ss_pred CCCChHHHHHHHHHHHH-HHHHhcccc--ccchhhHHHHHHHHhc-CC--CcchhhhHHHHHHHHHhccCCCcchh-hHH
Q 000134 509 HAEDLSLQKQALKRIEI-LIEMIGSHL--TTYVPKILVLLMHAIN-KE--SLQCEGLSVLHFFIEQLSRVSPSSTK-HVI 581 (2096)
Q Consensus 509 ~~~~~~~k~~~l~sl~~-li~l~g~~v--~~~~pqI~a~L~~aL~-~~--~L~~~~l~~W~~fv~~L~~~~~~~l~-~ll 581 (2096)
.+.+-.+|+.++.+|.. +++=+...+ ..-..+++..|...|. .. ..+..|+.|...|...|.. ..+. ++.
T Consensus 26 ~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~---~~f~~~y~ 102 (249)
T 2qk1_A 26 TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKT---PGFSKDYV 102 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCT---TTSCHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc---ccccHHHH
Confidence 44567788888888777 764221222 2233588888999993 33 3688999999999988841 2477 888
Q ss_pred HHHHHHhhhccccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCChhhhHHHHHHHHHhcCCCCHHHHHHHHH
Q 000134 582 SQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAV 661 (2096)
Q Consensus 582 ~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~ 661 (2096)
..++..++..+. +.....++.+..-+..++. ++... .+. ..+..-+..+.
T Consensus 103 ~~llp~ll~~l~---dkk~~V~~aa~~al~~i~~--------~~~~~--~~~-----------------~~l~~ll~~l~ 152 (249)
T 2qk1_A 103 SLVFTPLLDRTK---EKKPSVIEAIRKALLTICK--------YYDPL--ASS-----------------GRNEDMLKDIL 152 (249)
T ss_dssp HHHHHHHHHGGG---CCCHHHHHHHHHHHHHHHH--------HSCTT--CTT-----------------CTTHHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHH--------Hcccc--ccC-----------------CcHHHHHHHHH
Confidence 888887776664 3222233333333333321 11110 010 01234455667
Q ss_pred hhccCCChhHHHHHHHHHHHHHhhcH---HHHHHHHhccCCCCchhH-HHHHHHHHHHhhhhccccchhhHHHHHHHhhc
Q 000134 662 DGLNHENLNVRYMVVCELSKLLKLKS---EDVTALINGEACSDLDVL-STLISSLLRGCAEESRTVVGQKLKLVCADCLG 737 (2096)
Q Consensus 662 ~~l~~en~~Vr~~aL~eL~~~L~~~~---~~l~~~~~~e~~~~~~vi-~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG 737 (2096)
..++|.|+.||.+++.-|..++.... +.+.. .+ ..++..|..+..+. +.++|..|.+|||
T Consensus 153 ~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~-----------~l~~~iip~l~~~l~D~-----~~~VR~aA~~~l~ 216 (249)
T 2qk1_A 153 EHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQR-----------YLKDEVVPIVIQIVNDT-----QPAIRTIGFESFA 216 (249)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHH-----------HHTTTHHHHHHHHHTCS-----SHHHHHHHHHHHH
T ss_pred HHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHH-----------HHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHH
Confidence 78889999999999999999987654 22322 23 34555555544432 3689999999999
Q ss_pred ccC
Q 000134 738 ALG 740 (2096)
Q Consensus 738 ~IG 740 (2096)
.|.
T Consensus 217 ~i~ 219 (249)
T 2qk1_A 217 ILI 219 (249)
T ss_dssp HHH
T ss_pred HHH
Confidence 954
No 108
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=95.04 E-value=14 Score=48.71 Aligned_cols=148 Identities=9% Similarity=0.083 Sum_probs=92.1
Q ss_pred HHHHHhhcccCccchhhHHHHHHHHHHccCCch-hhhhhhhHHHHHHHHHhhc-ccHHHHHHHHHHHhHhhhh-hhhhhh
Q 000134 150 NIYFEFLYDESSEEVQLSCVRVIRRILVHGTRD-VLLKTRSEWIKCIEFLLLN-KRKAIRDAFCTQIGYFLQD-TVLSSL 226 (2096)
Q Consensus 150 ~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~-~~~~~~~~w~~~~~~~~~~-~~r~vR~a~~~~~~~~~~~-~~~~~~ 226 (2096)
+.+.++|.+ ...+|+..++..|.++..+...- ..... ...+..|-.+|.+ ++..+|.++++++..+-.+ .....+
T Consensus 17 ~~Lv~lL~~-~~~~vr~~A~~~L~~La~~~~~~~~i~~~-~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i 94 (644)
T 2z6h_A 17 PELTKLLND-EDQVVVNKAAVMVHQLSKKEASRHAIMRS-PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 94 (644)
T ss_dssp HHHHHHHTC-SCHHHHHHHHHHHHHHHTSTTHHHHHTTC-HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHHHCCChhHHHHHhc-cChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHH
Confidence 335566664 46689999999999999887522 11111 1233333333354 4899999999999876411 111112
Q ss_pred ccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhH--HHHHHHHHHhhCCCCcchHHHHHHH
Q 000134 227 FLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHF--LFLLILLVEQLDNPHVTVRMNASRL 304 (2096)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~--~~~l~~Li~~L~~~n~~v~~~A~~~ 304 (2096)
+.. ..+..+-+.+ ...|+.+++..+.+++.|........+.+ .-++=.|++.|.++++-++..|..-
T Consensus 95 ~~~----------g~i~~Lv~lL-~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~ 163 (644)
T 2z6h_A 95 FKS----------GGIPALVKML-GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDC 163 (644)
T ss_dssp HTT----------THHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHH
T ss_pred HHc----------CCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHH
Confidence 211 2344455533 34678899999999999854321122211 1245569999999999888888888
Q ss_pred HHHHhh
Q 000134 305 IRKSCF 310 (2096)
Q Consensus 305 i~~l~~ 310 (2096)
+.++|.
T Consensus 164 L~~La~ 169 (644)
T 2z6h_A 164 LQILAY 169 (644)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 888875
No 109
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=94.94 E-value=0.12 Score=69.37 Aligned_cols=115 Identities=16% Similarity=0.172 Sum_probs=97.0
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~ 1424 (2096)
+....|...+.+..+.|+++.|..+..+|.++.+ +.+....+.++...|+..+|+..++++++-.|
T Consensus 41 ~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P------------ 108 (723)
T 4gyw_A 41 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINP------------ 108 (723)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------------
Confidence 4467899999999999999999999999988764 56888999999999999999999999886221
Q ss_pred cccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHH
Q 000134 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDD 1499 (2096)
Q Consensus 1425 ~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~ 1499 (2096)
..+.++..+|.-+...|+ .++.++.|++|++++|+...+|+.+|..|..
T Consensus 109 ------------------------~~~~a~~~Lg~~~~~~g~--~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 109 ------------------------AFADAHSNLASIHKDSGN--IPEAIASYRTALKLKPDFPDAYCNLAHCLQI 157 (723)
T ss_dssp ------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred ------------------------CCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCChHHHhhhhhHHHh
Confidence 115567777777766665 8899999999999999999999999987754
No 110
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=94.91 E-value=0.47 Score=46.94 Aligned_cols=121 Identities=10% Similarity=-0.013 Sum_probs=92.5
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~ 1424 (2096)
+.+..|...+....+.|.++.|...+.++.... .+.+....|.++...|+..+|+..+++++...+.
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----------- 70 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE----------- 70 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-----------
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc-----------
Confidence 457789999999999999999999999988765 3567788999999999999999999998762110
Q ss_pred cccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHH
Q 000134 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDD 1499 (2096)
Q Consensus 1425 ~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~ 1499 (2096)
+ .......+.++..+|......|+ .++..+.|.++.+..|. ...+..++.....
T Consensus 71 --------~----------~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~ 124 (131)
T 1elr_A 71 --------N----------REDYRQIAKAYARIGNSYFKEEK--YKDAIHFYNKSLAEHRT-PDVLKKCQQAEKI 124 (131)
T ss_dssp --------S----------TTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
T ss_pred --------c----------chhHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH
Confidence 0 00112336677788877766664 78899999999999884 6667777665543
No 111
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=94.89 E-value=0.1 Score=53.67 Aligned_cols=102 Identities=16% Similarity=0.170 Sum_probs=58.6
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH--hccCC----hh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----LQ 1118 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~--~~~~s----l~ 1118 (2096)
-++...++-|.|..|+-+++..+...+. ....+..+..+|..+++.+........ ...++ ..
T Consensus 18 ~~G~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 18 NKGNEYFKKGDYPTAMRHYNEAVKRDPE------------NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 3678889999999999999998764321 123455566666666665554444321 11111 11
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHH
Q 000134 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCL 1158 (2096)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL 1158 (2096)
.....|...|+|++|..+|+++++..|++.+.+.++-+||
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 2334455566666666666666666666555555555543
No 112
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=94.87 E-value=0.56 Score=53.72 Aligned_cols=113 Identities=11% Similarity=0.025 Sum_probs=85.8
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC-----ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccc
Q 000134 1345 GAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA-----PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGST 1419 (2096)
Q Consensus 1345 ~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~-----~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~ 1419 (2096)
.......+...|....+.|.++.|...+.++....+ +.+.+..|..++..|+..+|+..+++.++..|.
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~------ 84 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI------ 84 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC------
Confidence 344567899999999999999999999999987642 457889999999999999999999999874321
Q ss_pred ccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhccchHHHH
Q 000134 1420 AISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTG------QKQKEDVITLYSRVRELQPMWEKGY 1490 (2096)
Q Consensus 1420 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~------~~~~~~i~~~Y~~a~~l~~~weK~~ 1490 (2096)
++..+.++..+|.-....+ ....++.+..|+++++..|....++
T Consensus 85 ---------------------------~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 134 (261)
T 3qky_A 85 ---------------------------DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVD 134 (261)
T ss_dssp ---------------------------CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHH
T ss_pred ---------------------------CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHH
Confidence 1122445666666554411 3347888999999999999765554
No 113
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=94.79 E-value=0.39 Score=52.76 Aligned_cols=116 Identities=12% Similarity=-0.056 Sum_probs=94.0
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CC----------------hHHHHHHHHHHHcCCchHHHHHHHHHh
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASG--AP----------------NVHMEKAKLLWSTRRSDGAIAELQQNL 1408 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~----------------~~~iE~AKLLW~~g~~~~Ai~~L~~~i 1408 (2096)
..+..|...+..+.+.|.++.|.....+|.... .+ .+....|..+...|+..+|+..++.++
T Consensus 36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 456779999999999999999999999998763 34 677888999999999999999999987
Q ss_pred hcCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHH
Q 000134 1409 LNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEK 1488 (2096)
Q Consensus 1409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK 1488 (2096)
...| ..++++..+|.-....|+ .++.++.|+++++++|....
T Consensus 116 ~~~p------------------------------------~~~~~~~~lg~~~~~~~~--~~~A~~~~~~al~~~p~~~~ 157 (198)
T 2fbn_A 116 KIDK------------------------------------NNVKALYKLGVANMYFGF--LEEAKENLYKAASLNPNNLD 157 (198)
T ss_dssp HHST------------------------------------TCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHSTTCHH
T ss_pred HhCc------------------------------------ccHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHCCCcHH
Confidence 6211 114466677776666665 78889999999999999999
Q ss_pred HHHHHHhhhHHH
Q 000134 1489 GYFYMAKYCDDV 1500 (2096)
Q Consensus 1489 ~~~~la~y~d~l 1500 (2096)
++..++..+..+
T Consensus 158 ~~~~l~~~~~~~ 169 (198)
T 2fbn_A 158 IRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998877654
No 114
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=94.57 E-value=0.25 Score=52.26 Aligned_cols=115 Identities=16% Similarity=0.087 Sum_probs=88.4
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000134 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2096)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~ 1423 (2096)
.+....|+..|++-.+.|.++.|...+.+|.... .+.+....+.++...|+..+|+..++++++-.|.
T Consensus 28 p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---------- 97 (150)
T 4ga2_A 28 RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPT---------- 97 (150)
T ss_dssp HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC----------
Confidence 3455678999999999999999999999998875 4678889999999999999999999998863221
Q ss_pred ccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhh
Q 000134 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497 (2096)
Q Consensus 1424 ~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~ 1497 (2096)
.+.++..+|.-+...++.. +.+...+++|++++|+...+|.-.++.+
T Consensus 98 --------------------------~~~~~~~la~~~~~~~~~~-~aa~~~~~~al~l~P~~~~~~~l~~~ll 144 (150)
T 4ga2_A 98 --------------------------QKDLVLKIAELLCKNDVTD-GRAKYWVERAAKLFPGSPAVYKLKEQLL 144 (150)
T ss_dssp --------------------------CHHHHHHHHHHHHHHCSSS-SHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred --------------------------CHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 1345677777666666532 2333445899999999888877666554
No 115
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=94.40 E-value=0.56 Score=47.47 Aligned_cols=102 Identities=11% Similarity=0.052 Sum_probs=82.6
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000134 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2096)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~ 1423 (2096)
...+..|...+....+.|.++.|...+.++....+ +.+....|.++...|+..+|+..+++++...|
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p----------- 74 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG----------- 74 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-----------
Confidence 34578899999999999999999999999887753 56788999999999999999999999876211
Q ss_pred ccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Q 000134 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM 1485 (2096)
Q Consensus 1424 ~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~ 1485 (2096)
..+.++..+|......|+ .++.+..|++++++.|.
T Consensus 75 -------------------------~~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 75 -------------------------QSVKAHFFLGQCQLEMES--YDEAIANLQRAYSLAKE 109 (137)
T ss_dssp -------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHH
T ss_pred -------------------------hhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHChh
Confidence 013456677776666664 78889999999999887
No 116
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=94.38 E-value=0.53 Score=49.01 Aligned_cols=112 Identities=12% Similarity=-0.016 Sum_probs=88.5
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~ 1424 (2096)
+.+..|...|....+.|.++.|...+.++.... .+.+....|.++...|+..+|+..++++++..|.
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----------- 79 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK----------- 79 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----------
Confidence 456789999999999999999999999988765 3567788899999999999999999998763110
Q ss_pred cccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhh
Q 000134 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKY 1496 (2096)
Q Consensus 1425 ~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y 1496 (2096)
.+.++..+|......|+ .++.++.|.++++..|....++..++..
T Consensus 80 -------------------------~~~~~~~~a~~~~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 124 (166)
T 1a17_A 80 -------------------------YIKGYYRRAASNMALGK--FRAALRDYETVVKVKPHDKDAKMKYQEC 124 (166)
T ss_dssp -------------------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred -------------------------cHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 13356666666655554 7889999999999999887777655543
No 117
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=94.35 E-value=0.36 Score=59.83 Aligned_cols=139 Identities=9% Similarity=0.029 Sum_probs=106.6
Q ss_pred CCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCC-chHHHHHHHHHhhcCCcccccccc
Q 000134 1344 LGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRR-SDGAIAELQQNLLNKPVEVVGSTA 1420 (2096)
Q Consensus 1344 ~~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~-~~~Ai~~L~~~i~~~~~~~~~~~~ 1420 (2096)
+.......|...+.+..+.|+++.|.....+|..+.+ +.+....+.++...|+ ..+|+..+++++...|.
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~------- 164 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK------- 164 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-------
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-------
Confidence 4567788899999999999999999999999988764 4577889999999997 99999999998863221
Q ss_pred cccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHH
Q 000134 1421 ISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDV 1500 (2096)
Q Consensus 1421 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l 1500 (2096)
.+.++..+|.-+...|+ .++.+..|++|++++|+...+|+++|..+.++
T Consensus 165 -----------------------------~~~a~~~~g~~~~~~g~--~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~ 213 (382)
T 2h6f_A 165 -----------------------------NYQVWHHRRVLVEWLRD--PSQELEFIADILNQDAKNYHAWQHRQWVIQEF 213 (382)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHTC--CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred -----------------------------CHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCccCHHHHHHHHHHHHHc
Confidence 13345555555555554 56788899999999999999999998877543
Q ss_pred HHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcc
Q 000134 1501 LVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2096)
Q Consensus 1501 ~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~ 1542 (2096)
= . ...++.+|-+++...+.+
T Consensus 214 g--------------~--------~~eAl~~~~~al~l~P~~ 233 (382)
T 2h6f_A 214 K--------------L--------WDNELQYVDQLLKEDVRN 233 (382)
T ss_dssp T--------------C--------CTTHHHHHHHHHHHCTTC
T ss_pred C--------------C--------hHHHHHHHHHHHHhCCCC
Confidence 0 0 014788888888776654
No 118
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=94.32 E-value=0.3 Score=59.09 Aligned_cols=117 Identities=14% Similarity=-0.004 Sum_probs=96.3
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC-----------------hHHHHHHHHHHHcCCchHHHHHHHHHh
Q 000134 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAP-----------------NVHMEKAKLLWSTRRSDGAIAELQQNL 1408 (2096)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~~-----------------~~~iE~AKLLW~~g~~~~Ai~~L~~~i 1408 (2096)
...+..|...+....+.|.++.|.....+|..+.+. .+....|.++...|+..+|+..+++++
T Consensus 144 p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 356778999999999999999999999999877532 577889999999999999999999987
Q ss_pred hcCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHH
Q 000134 1409 LNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEK 1488 (2096)
Q Consensus 1409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK 1488 (2096)
...| ..++++..+|.-+...|+ .++.+..|++|++++|....
T Consensus 224 ~~~p------------------------------------~~~~a~~~lg~~~~~~g~--~~~A~~~~~~al~l~P~~~~ 265 (336)
T 1p5q_A 224 ELDS------------------------------------NNEKGLSRRGEAHLAVND--FELARADFQKVLQLYPNNKA 265 (336)
T ss_dssp HHCT------------------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCSSCHH
T ss_pred HhCC------------------------------------CcHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHCCCCHH
Confidence 6211 114567777776666664 78899999999999999999
Q ss_pred HHHHHHhhhHHH
Q 000134 1489 GYFYMAKYCDDV 1500 (2096)
Q Consensus 1489 ~~~~la~y~d~l 1500 (2096)
+++.+|..+.++
T Consensus 266 a~~~l~~~~~~~ 277 (336)
T 1p5q_A 266 AKTQLAVCQQRI 277 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
No 119
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=94.30 E-value=0.59 Score=46.05 Aligned_cols=113 Identities=14% Similarity=0.176 Sum_probs=56.2
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH--hccCC----hh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----LQ 1118 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~--~~~~s----l~ 1118 (2096)
.++......+.|..|+.+++..+...+. ....+..+..+|...++++........ ...+. ..
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 73 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALELDPR------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWY 73 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHcCCc------------chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHH
Confidence 4677778889999999999987653210 112333445555555554444443321 00111 11
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHH
Q 000134 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVT 1169 (2096)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~ 1169 (2096)
.....+...|+|++|..+|+.+++..|++......+..++...|+++....
T Consensus 74 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 124 (136)
T 2fo7_A 74 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 124 (136)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHH
Confidence 122234445555555555555555555444444444444445555444433
No 120
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=94.30 E-value=0.18 Score=53.97 Aligned_cols=95 Identities=11% Similarity=0.034 Sum_probs=74.4
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhccCChhHHHHHh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSN 1124 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~~sl~~qil~~ 1124 (2096)
.++...++-|.|..|+-+++.-+... | ++++.+.++.. .+
T Consensus 41 ~lg~~~~~~g~~~eA~~~~~~al~~~-----P-----------------------~~~~~~~~lg~------------~~ 80 (151)
T 3gyz_A 41 SYAYDFYNKGRIEEAEVFFRFLCIYD-----F-----------------------YNVDYIMGLAA------------IY 80 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-----T-----------------------TCHHHHHHHHH------------HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-----C-----------------------CCHHHHHHHHH------------HH
Confidence 56788888999999999999876542 2 23444444322 35
Q ss_pred HhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccCh
Q 000134 1125 KKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIP 1179 (2096)
Q Consensus 1125 E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p 1179 (2096)
...|++++|..+|+++++..|++...+.++=.|+..+|+++..+...+..+...|
T Consensus 81 ~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 81 QIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 6889999999999999999999999999999999999999988887776554444
No 121
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=94.29 E-value=0.4 Score=62.14 Aligned_cols=139 Identities=17% Similarity=0.138 Sum_probs=107.9
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~ 1424 (2096)
.....|...|.+..+.|+++.|...+.+|.+..+ +.+....|.++...|+..+|+..++++++..|.
T Consensus 21 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----------- 89 (568)
T 2vsy_A 21 QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE----------- 89 (568)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-----------
Confidence 4467899999999999999999999999988753 567889999999999999999999998763210
Q ss_pred cccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHH
Q 000134 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDA 1504 (2096)
Q Consensus 1425 ~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~~ 1504 (2096)
.+.++..+|......|+ .++.++.|+++.+++|....+++.+|..|...-
T Consensus 90 -------------------------~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~--- 139 (568)
T 2vsy_A 90 -------------------------HPGIALWLGHALEDAGQ--AEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLC--- 139 (568)
T ss_dssp -------------------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---
T ss_pred -------------------------CHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh---
Confidence 13456667776666665 788999999999999999899999988764320
Q ss_pred HhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcc
Q 000134 1505 RKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2096)
Q Consensus 1505 ~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~ 1542 (2096)
..| -...++..|-+++..++..
T Consensus 140 --------~~g--------~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 140 --------DWR--------ALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp --------CCT--------THHHHHHHHHHHHHHTCCC
T ss_pred --------ccc--------cHHHHHHHHHHHHhcCCcc
Confidence 001 1235788888888877664
No 122
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=94.21 E-value=3.4 Score=57.22 Aligned_cols=167 Identities=9% Similarity=0.078 Sum_probs=99.9
Q ss_pred cchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhh------cccHHHHHHHHHHHhHhhhhhhhhhhccCccc--c
Q 000134 162 EEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLL------NKRKAIRDAFCTQIGYFLQDTVLSSLFLDENA--S 233 (2096)
Q Consensus 162 ~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~------~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~--~ 233 (2096)
+.++.+....|..+..+-. +..+..-.+++ ...+. +++=..|+|+-..+.++.+.-. .+ ..+-. .
T Consensus 375 ~s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i---~~~l~~~~~~~~~~w~~reaal~algaia~~~~-~~--~~~~~~~~ 447 (960)
T 1wa5_C 375 DTRRRACTDFLKELKEKNE-VLVTNIFLAHM---KGFVDQYMSDPSKNWKFKDLYIYLFTALAINGN-IT--NAGVSSTN 447 (960)
T ss_dssp -CHHHHHHHHHHHHHHHCH-HHHHHHHHHHH---HHHHHHHHC----CHHHHHHHHHHHHHHHBSSC-CB--TTBCCCBC
T ss_pred cCcHHHHHHHHHHHHHHcc-hhHHHHHHHHH---HHHHHHhccCcchhHHHHHHHHHHHHHHHHHhc-cc--cCCccccc
Confidence 3677888888888887765 33333322332 22223 4555688999888888641100 00 00000 0
Q ss_pred cchhhHHHHH-HHHHHhhhc--CChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhh
Q 000134 234 SRSNELKLLD-VIKLAFTAA--DDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCF 310 (2096)
Q Consensus 234 ~~~~~~~~~~-~~~~~~~~~--~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~ 310 (2096)
..-.-..||. .+...+... .+|.++-+.+.++|++ +...+.|.+.-++=.|+..|.++++.|+..|..-|.++|.
T Consensus 448 ~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~--~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 448 NLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTF--RNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp TTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHT--GGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHH--HhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 0013344443 344444444 3899999999999998 4456778777777789999999999999999999999988
Q ss_pred hhc---ccc----cccccchhhhhhhhhhHHHHH
Q 000134 311 FHL---KGG----CELLVSKAVLICNELFDYLSV 337 (2096)
Q Consensus 311 ~~~---~~~----~~l~~~~~~~~~~~l~~~~~~ 337 (2096)
... .+. -+.+.++...+...|+..+.+
T Consensus 526 ~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~ 559 (960)
T 1wa5_C 526 IRESNTSPAFIFHKEDISNSTEILLKNLIALILK 559 (960)
T ss_dssp CBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHT
T ss_pred cccccccccccccHHHhhhhHHHHHHHHHHHHHh
Confidence 532 000 123456665555555544433
No 123
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=94.20 E-value=0.19 Score=51.25 Aligned_cols=98 Identities=12% Similarity=0.205 Sum_probs=71.8
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhccCChhHHHH
Q 000134 1043 KVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELL 1122 (2096)
Q Consensus 1043 ~~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~~sl~~qil 1122 (2096)
.-.++...++-|.|..|+.+++.-+...+ +.+++...+. .
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P----------------------------~~~~a~~~lg------------~ 59 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEP----------------------------EREEAWRSLG------------L 59 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST----------------------------TCHHHHHHHH------------H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC----------------------------CCHHHHHHHH------------H
Confidence 34678888999999999999998876421 1122222221 2
Q ss_pred HhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChh
Q 000134 1123 SNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ 1180 (2096)
Q Consensus 1123 ~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~ 1180 (2096)
.+...|++++|..+|+++++..|++...+..+-.|+..+|+++..+...+..+...|+
T Consensus 60 ~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 60 TQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 2446789999999999999999999998888889999999999887777766555553
No 124
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=94.00 E-value=0.94 Score=49.64 Aligned_cols=132 Identities=8% Similarity=-0.085 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCC
Q 000134 1350 NCWLQYAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSL 1429 (2096)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~all~a~~~~~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~ 1429 (2096)
..+...|....+.|.++.|...+.++.. ..+.+....|..++..|+..+|+..+++++...|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~----------------- 68 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQD-PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK----------------- 68 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSSS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----------------
Confidence 3467888999999999999999998852 3567888999999999999999999999876211
Q ss_pred CCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchH----------------HHHHHH
Q 000134 1430 VPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWE----------------KGYFYM 1493 (2096)
Q Consensus 1430 ~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~we----------------K~~~~l 1493 (2096)
..+.++..+|......|+ .++.++.|+++++..|... .+|+.+
T Consensus 69 -------------------~~~~~~~~lg~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (213)
T 1hh8_A 69 -------------------HLAVAYFQRGMLYYQTEK--YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNI 127 (213)
T ss_dssp -------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHH
T ss_pred -------------------cchHHHHHHHHHHHHccc--HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHH
Confidence 013456677776666554 7889999999999666543 888888
Q ss_pred HhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcc
Q 000134 1494 AKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2096)
Q Consensus 1494 a~y~d~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~ 1542 (2096)
|..|.+. | -...|+..|-+++...++.
T Consensus 128 ~~~~~~~--------------g--------~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 128 AFMYAKK--------------E--------EWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHT--------------T--------CHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHc--------------c--------CHHHHHHHHHHHHHcCccc
Confidence 8876432 0 1235778888888776654
No 125
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=93.95 E-value=0.49 Score=48.47 Aligned_cols=109 Identities=8% Similarity=-0.022 Sum_probs=86.5
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000134 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2096)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~ 1423 (2096)
.+.+..|-..+....+.|.++.|.....+|..+.+ +.+..-.|..+...|+..+|+..++++++-.|.
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~---------- 74 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE---------- 74 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc----------
Confidence 35667788889999999999999999999988764 456778899999999999999999998862110
Q ss_pred ccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Q 000134 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM 1485 (2096)
Q Consensus 1424 ~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~ 1485 (2096)
. .......|+++..+|......++ .++.++.|++|++.+|+
T Consensus 75 ---------~----------~~~~~~~a~~~~~lg~~~~~~~~--~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 75 ---------T----------RADYKLIAKAMSRAGNAFQKQND--LSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp ---------T----------TCCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSCC
T ss_pred ---------c----------chhhHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCcC
Confidence 0 01123568899999998877765 78888999999888775
No 126
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=93.91 E-value=0.3 Score=62.12 Aligned_cols=118 Identities=8% Similarity=0.060 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHHHHHcCCh-HHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000134 1347 EVGNCWLQYAKLCRLAGHY-ETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~-~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~ 1423 (2096)
..+..|...+++....|.+ +.|...+.+|.+..+ +.+....|.+++..|+..+|+..++++++..|.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------- 169 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN---------- 169 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC----------
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----------
Confidence 4577899999999999999 999999999987753 568889999999999999999999998763210
Q ss_pred ccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHhccchHHHHHHHHhh
Q 000134 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQ-------KQKEDVITLYSRVRELQPMWEKGYFYMAKY 1496 (2096)
Q Consensus 1424 ~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~-------~~~~~i~~~Y~~a~~l~~~weK~~~~la~y 1496 (2096)
+.++..+|.-+...+. ...++.++.|++|++++|....+|+.+|..
T Consensus 170 ---------------------------~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 222 (474)
T 4abn_A 170 ---------------------------KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNA 222 (474)
T ss_dssp ---------------------------HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 1233334433322200 125678899999999999999999999998
Q ss_pred hHHHH
Q 000134 1497 CDDVL 1501 (2096)
Q Consensus 1497 ~d~l~ 1501 (2096)
|-..+
T Consensus 223 ~~~~~ 227 (474)
T 4abn_A 223 YLSLY 227 (474)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87663
No 127
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=93.85 E-value=0.68 Score=45.64 Aligned_cols=110 Identities=16% Similarity=0.245 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccccc
Q 000134 1350 NCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSL 1427 (2096)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~ 1427 (2096)
..|...+......|.++.|...+.++.... .+......|.++...|+..+|+..+++++...+.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-------------- 67 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-------------- 67 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC--------------
Confidence 468889999999999999999999887654 3456677899999999999999999988752110
Q ss_pred CCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhh
Q 000134 1428 SLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497 (2096)
Q Consensus 1428 ~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~ 1497 (2096)
...++..+|......| +.++..+.|.++++..|....+|+.+|..|
T Consensus 68 ----------------------~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 113 (136)
T 2fo7_A 68 ----------------------SAEAWYNLGNAYYKQG--DYDEAIEYYQKALELDPRSAEAWYNLGNAY 113 (136)
T ss_dssp ----------------------CHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ----------------------chHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 0223445555444444 478889999999999998888888888765
No 128
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=93.62 E-value=0.6 Score=45.20 Aligned_cols=96 Identities=7% Similarity=0.085 Sum_probs=67.5
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhccCChhHHHHHh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSN 1124 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~~sl~~qil~~ 1124 (2096)
.++......+.|..|+.+++..+...+ ++++....+ ...+
T Consensus 9 ~~~~~~~~~~~~~~A~~~~~~~~~~~~----------------------------~~~~~~~~~------------a~~~ 48 (118)
T 1elw_A 9 EKGNKALSVGNIDDALQCYSEAIKLDP----------------------------HNHVLYSNR------------SAAY 48 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT----------------------------TCHHHHHHH------------HHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCC----------------------------CcHHHHHHH------------HHHH
Confidence 467788888999999999988765321 112222222 2235
Q ss_pred HhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChh
Q 000134 1125 KKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ 1180 (2096)
Q Consensus 1125 E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~ 1180 (2096)
...|+|++|..+|+++++..|++......+-.|+..+|+++....+.+......|+
T Consensus 49 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 104 (118)
T 1elw_A 49 AKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN 104 (118)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 56788899999999888888888777777778888888888877766655554443
No 129
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=93.60 E-value=0.38 Score=64.15 Aligned_cols=137 Identities=14% Similarity=-0.003 Sum_probs=106.8
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000134 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2096)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~ 1423 (2096)
.+....|+..|.+..+.|+++.|...+.+|.+.. .+.+....+.++...|+..+|+..++++++-.|.
T Consensus 430 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~---------- 499 (681)
T 2pzi_A 430 SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG---------- 499 (681)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT----------
T ss_pred ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------
Confidence 3456789999999999999999999999988764 4568889999999999999999999999863221
Q ss_pred ccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHH
Q 000134 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVD 1503 (2096)
Q Consensus 1424 ~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~ 1503 (2096)
+ +.++..+|.-....|+. ++ ++.|++|++++|....+|+.+|.-|.+.
T Consensus 500 ---------~-----------------~~~~~~lg~~~~~~g~~--~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~--- 547 (681)
T 2pzi_A 500 ---------E-----------------LAPKLALAATAELAGNT--DE-HKFYQTVWSTNDGVISAAFGLARARSAE--- 547 (681)
T ss_dssp ---------C-----------------SHHHHHHHHHHHHHTCC--CT-TCHHHHHHHHCTTCHHHHHHHHHHHHHT---
T ss_pred ---------C-----------------hHHHHHHHHHHHHcCCh--HH-HHHHHHHHHhCCchHHHHHHHHHHHHHc---
Confidence 0 23455566656666653 45 7899999999999999999999876432
Q ss_pred HHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcch
Q 000134 1504 ARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNL 1543 (2096)
Q Consensus 1504 ~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~~ 1543 (2096)
| -...|+..|-+++...+.+.
T Consensus 548 -----------g--------~~~~A~~~~~~al~l~P~~~ 568 (681)
T 2pzi_A 548 -----------G--------DRVGAVRTLDEVPPTSRHFT 568 (681)
T ss_dssp -----------T--------CHHHHHHHHHTSCTTSTTHH
T ss_pred -----------C--------CHHHHHHHHHhhcccCcccH
Confidence 1 12368889999998887753
No 130
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=93.58 E-value=0.7 Score=45.54 Aligned_cols=107 Identities=11% Similarity=0.116 Sum_probs=56.7
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH--hccCC----hh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----LQ 1118 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~--~~~~s----l~ 1118 (2096)
.++......+.|..|+.+++..+..... ....+..+..+|...++++........ ...++ ..
T Consensus 17 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 84 (131)
T 2vyi_A 17 TEGNEQMKVENFEAAVHFYGKAIELNPA------------NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYG 84 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHcCCC------------CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHH
Confidence 6788888999999999999987764211 112344555555555555544444321 11111 11
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccC
Q 000134 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCH 1163 (2096)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq 1163 (2096)
.....+...|+|++|..+|+.+++..|++......+-.|+..+|+
T Consensus 85 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 122344555555555555555555555544444444444444443
No 131
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=93.56 E-value=1.1 Score=47.13 Aligned_cols=113 Identities=13% Similarity=0.031 Sum_probs=84.9
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccc
Q 000134 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSIT 1425 (2096)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~ 1425 (2096)
....|...+.+..+.|.++.|...+.++.... .+.+....|.++...|+..+|+..+++++...+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------------ 108 (186)
T 3as5_A 41 DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI------------ 108 (186)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH------------
Confidence 35678888999999999999999888887664 3457778888999999999999999887652110
Q ss_pred ccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhH
Q 000134 1426 SLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCD 1498 (2096)
Q Consensus 1426 ~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d 1498 (2096)
.+.++..+|......|+ .++..+.|.++++..|....+|+.+|..|.
T Consensus 109 ------------------------~~~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 155 (186)
T 3as5_A 109 ------------------------NFNVRFRLGVALDNLGR--FDEAIDSFKIALGLRPNEGKVHRAIAFSYE 155 (186)
T ss_dssp ------------------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ------------------------hHHHHHHHHHHHHHcCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 02345555655554443 778888899999999888888888888764
No 132
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=93.52 E-value=0.84 Score=45.59 Aligned_cols=107 Identities=16% Similarity=0.061 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CC---hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000134 1350 NCWLQYAKLCRLAGHYETATRAILEAQASG--AP---NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2096)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~all~a~~~~--~~---~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~ 1424 (2096)
+.+...|....+.|.++.|...+.++.... .+ .+....|..+...|+..+|+..++..++..|.
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~----------- 71 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT----------- 71 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-----------
Confidence 347788999999999999999999887653 33 57888999999999999999999998763221
Q ss_pred cccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHH
Q 000134 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYF 1491 (2096)
Q Consensus 1425 ~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~ 1491 (2096)
+...+.++..+|......|+ .++.++.|+++++..|....+..
T Consensus 72 ----------------------~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 72 ----------------------HDKAAGGLLKLGLSQYGEGK--NTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp ----------------------STTHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTSHHHHH
T ss_pred ----------------------CcccHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHCCCChHHHH
Confidence 11234567777877766665 78889999999999987655443
No 133
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=93.48 E-value=2 Score=54.09 Aligned_cols=59 Identities=14% Similarity=0.058 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
..+|....-.|...|.+..|..+.++.. ..|+-..+-..++-+.|+..+||..|++++.
T Consensus 177 ~~~Wk~v~~aCv~~~ef~lA~~~~l~L~--~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 177 TRTWKEVCFACVDGKEFRLAQMCGLHIV--VHADELEELINYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHTTTTTT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHcCcHHHHHHHHHHHH--hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 3578888889999999999977766532 3444444556788889999999999999874
No 134
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=93.41 E-value=0.24 Score=49.97 Aligned_cols=87 Identities=11% Similarity=0.211 Sum_probs=65.7
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCC
Q 000134 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGR 1198 (2096)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~ 1198 (2096)
.....+.+.|+|++|..+|+++++..|++.....++-.|+..+|+|+..+...+......|+....+. ....+...+|+
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-~lg~~~~~~~~ 87 (126)
T 3upv_A 9 LEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYI-RKATAQIAVKE 87 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH-HHHHHHHHHhC
Confidence 34556778999999999999999999999888888889999999999888877766665665443333 23445667888
Q ss_pred hhhHHHhh
Q 000134 1199 WDLMDEYL 1206 (2096)
Q Consensus 1199 Wd~l~~~l 1206 (2096)
++.-.+++
T Consensus 88 ~~~A~~~~ 95 (126)
T 3upv_A 88 YASALETL 95 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87655443
No 135
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=93.28 E-value=0.63 Score=57.31 Aligned_cols=116 Identities=10% Similarity=0.026 Sum_probs=93.4
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhh----------------cC--CChHHHHHHHHHHHcCCchHHHHHHHHHh
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQA----------------SG--APNVHMEKAKLLWSTRRSDGAIAELQQNL 1408 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~----------------~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i 1408 (2096)
+.+..|...|..+.+.|.++.|.....+|.. .. .+.+....|..+...|+..+|+..+++++
T Consensus 221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 4466799999999999999999998888875 21 23567788999999999999999999987
Q ss_pred hcCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHH
Q 000134 1409 LNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEK 1488 (2096)
Q Consensus 1409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK 1488 (2096)
+..| ..++++..+|..+...++ .++.++.|++|.++.|....
T Consensus 301 ~~~p------------------------------------~~~~a~~~lg~~~~~~g~--~~eA~~~l~~Al~l~P~~~~ 342 (370)
T 1ihg_A 301 EIDP------------------------------------SNTKALYRRAQGWQGLKE--YDQALADLKKAQEIAPEDKA 342 (370)
T ss_dssp TTCT------------------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHH
T ss_pred HhCc------------------------------------hhHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCCHH
Confidence 6211 115677777777666664 78899999999999999988
Q ss_pred HHHHHHhhhHHH
Q 000134 1489 GYFYMAKYCDDV 1500 (2096)
Q Consensus 1489 ~~~~la~y~d~l 1500 (2096)
++..++..+..+
T Consensus 343 ~~~~l~~~~~~~ 354 (370)
T 1ihg_A 343 IQAELLKVKQKI 354 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999888877655
No 136
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=93.17 E-value=0.51 Score=59.96 Aligned_cols=152 Identities=11% Similarity=-0.040 Sum_probs=112.2
Q ss_pred HHHHHHHHhchhH-HHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH--hccCCh---
Q 000134 1044 VTLARASFRCQAY-ARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLSL--- 1117 (2096)
Q Consensus 1044 ~lLA~aA~~C~ay-aRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~--~~~~sl--- 1117 (2096)
..++.+...-+.| ..|+-+++..+...+. ....+..|..+|...++++........ ...++.
T Consensus 106 ~~lg~~~~~~g~~~~~A~~~~~~al~~~p~------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 173 (474)
T 4abn_A 106 MLKGKALNVTPDYSPEAEVLLSKAVKLEPE------------LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSL 173 (474)
T ss_dssp HHHHHHHTSSSSCCHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHH
Confidence 3678888889999 9999999998765321 134677899999999999988777642 222331
Q ss_pred hHHHHHhHhh---------cCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhc--------cChHHHHHHhhhhhccCh-
Q 000134 1118 QDELLSNKKS---------GNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNM--------CHLQAMVTHVDGLISRIP- 1179 (2096)
Q Consensus 1118 ~~qil~~E~~---------G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~L--------Gq~~~ll~~~~gl~~~~p- 1179 (2096)
......+... |+|++|..+|+++++..|++......+-.|+..+ |+++..+.+.+......|
T Consensus 174 ~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 253 (474)
T 4abn_A 174 QNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK 253 (474)
T ss_dssp HHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC
Confidence 1223445677 9999999999999999999998888888899888 999988887776555555
Q ss_pred --hhhhhHhHHHHHHHHhcCChhhHHHhhcc
Q 000134 1180 --QYKKTWCMQGVQAAWRLGRWDLMDEYLSG 1208 (2096)
Q Consensus 1180 --~~~~~~~~~~vEAAWrlg~Wd~l~~~l~~ 1208 (2096)
.....+ .....+.+.+|+|+.-.+++..
T Consensus 254 ~~~~~~~~-~~lg~~~~~~g~~~~A~~~~~~ 283 (474)
T 4abn_A 254 ASSNPDLH-LNRATLHKYEESYGEALEGFSQ 283 (474)
T ss_dssp GGGCHHHH-HHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccCHHHH-HHHHHHHHHcCCHHHHHHHHHH
Confidence 333322 2345677889999887666554
No 137
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=93.15 E-value=2.6 Score=49.76 Aligned_cols=111 Identities=12% Similarity=0.086 Sum_probs=83.3
Q ss_pred hhHHHHHHHHHHHHH-------cCCh-------HHHHHHHHHHhh-cCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1347 EVGNCWLQYAKLCRL-------AGHY-------ETATRAILEAQA-SGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1347 ~~~~~WL~~AklARK-------ag~~-------~~A~~all~a~~-~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
.....|+..+.+... .|.+ +.|...+.+|.. +.+ +.+.+..|.++...|+..+|+..++++++
T Consensus 48 ~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 127 (308)
T 2ond_A 48 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA 127 (308)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 346789999998864 4776 889999999987 443 35788999999999999999999999876
Q ss_pred cCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHH
Q 000134 1410 NKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKG 1489 (2096)
Q Consensus 1410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~ 1489 (2096)
..| .+ . ..++..+|.+....|. .++..+.|.+|++..|.....
T Consensus 128 ~~p-------------------~~--------------~--~~~~~~~~~~~~~~~~--~~~A~~~~~~a~~~~p~~~~~ 170 (308)
T 2ond_A 128 IED-------------------ID--------------P--TLVYIQYMKFARRAEG--IKSGRMIFKKAREDARTRHHV 170 (308)
T ss_dssp SSS-------------------SC--------------T--HHHHHHHHHHHHHHHC--HHHHHHHHHHHHTSTTCCTHH
T ss_pred ccc-------------------cC--------------c--cHHHHHHHHHHHHhcC--HHHHHHHHHHHHhcCCCCHHH
Confidence 211 10 0 1157777888776665 788899999999998876555
Q ss_pred HHHHH
Q 000134 1490 YFYMA 1494 (2096)
Q Consensus 1490 ~~~la 1494 (2096)
|..+|
T Consensus 171 ~~~~a 175 (308)
T 2ond_A 171 YVTAA 175 (308)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 138
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.15 E-value=1.2 Score=52.37 Aligned_cols=157 Identities=6% Similarity=-0.145 Sum_probs=98.3
Q ss_pred HHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHH----Hhc-cC------
Q 000134 1047 ARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLAR----LHK-SL------ 1115 (2096)
Q Consensus 1047 A~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~----~~~-~~------ 1115 (2096)
+..-...|.|..|+-+++.-+.-.....++.. ....+..|..+|..++++|....... +.. ..
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDE------AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 34455688999999999887653321111100 11356778889999998887766532 111 11
Q ss_pred -ChhHHHHHhHhh-cCHHHHHHHHHHHHccCCCc------hhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhh---
Q 000134 1116 -SLQDELLSNKKS-GNWAEVFTSCEQALQMEPTS------VQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKT--- 1184 (2096)
Q Consensus 1116 -sl~~qil~~E~~-G~W~~A~~~YE~~Lq~~p~~------~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~--- 1184 (2096)
....-...|+.. |++++|..+|+++++..|++ .....++-.++.++|+|+..+.+.+......|+....
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 122334567785 99999999999999876643 2334556677888999998888777655444332110
Q ss_pred ---HhHHHHHHHHhcCChhhHHHhhccc
Q 000134 1185 ---WCMQGVQAAWRLGRWDLMDEYLSGA 1209 (2096)
Q Consensus 1185 ---~~~~~vEAAWrlg~Wd~l~~~l~~~ 1209 (2096)
.......+...+|+++.-.++...+
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a 225 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEG 225 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1112234566789998777766554
No 139
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=93.13 E-value=2.1 Score=50.52 Aligned_cols=115 Identities=10% Similarity=0.042 Sum_probs=87.7
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--Ch-HHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PN-VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~-~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~ 1423 (2096)
.....|+.++.+-.+.|.++.|.....+|....+ +. +.+..+.++...|+..+|+..++++++..|.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~---------- 166 (308)
T 2ond_A 97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART---------- 166 (308)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC----------
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC----------
Confidence 3456899999999999999999999999987753 44 7899999999999999999999998763110
Q ss_pred ccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhH
Q 000134 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCD 1498 (2096)
Q Consensus 1424 ~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d 1498 (2096)
. +.+++..+. +........++.++.|.+|++.+|.....|..+|.++.
T Consensus 167 ---------~-----------------~~~~~~~a~-~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 214 (308)
T 2ond_A 167 ---------R-----------------HHVYVTAAL-MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS 214 (308)
T ss_dssp ---------C-----------------THHHHHHHH-HHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------C-----------------HHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 0 112222211 11122356889999999999999999999999888763
No 140
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=93.11 E-value=1.1 Score=46.47 Aligned_cols=106 Identities=9% Similarity=-0.019 Sum_probs=82.8
Q ss_pred CCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccc
Q 000134 1344 LGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAI 1421 (2096)
Q Consensus 1344 ~~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~ 1421 (2096)
+.+.....|...|....+.|+++.|...+.++....+ +.+....+..+...|+..+|+..+++++.-.|
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--------- 83 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI--------- 83 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC---------
Confidence 4456678899999999999999999999999887754 56778889999999999999999999876321
Q ss_pred ccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchH
Q 000134 1422 SSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWE 1487 (2096)
Q Consensus 1422 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~we 1487 (2096)
.+ ..++..+|.-+...|+ .++.++.|.+++++.|...
T Consensus 84 ----------~~-----------------~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 84 ----------NE-----------------PRFPFHAAECHLQLGD--LDGAESGFYSARALAAAQP 120 (142)
T ss_dssp ----------TC-----------------THHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHTCG
T ss_pred ----------CC-----------------cHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCc
Confidence 11 2245556666655554 7888899999999988543
No 141
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=93.09 E-value=1 Score=51.42 Aligned_cols=148 Identities=14% Similarity=0.122 Sum_probs=95.5
Q ss_pred HHHhhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhh-hh-hhhhhccC
Q 000134 152 YFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQ-DT-VLSSLFLD 229 (2096)
Q Consensus 152 ~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~-~~-~~~~~~~~ 229 (2096)
|++.|.. .+.+++..+...|++++.........-....-+..|-.+|.+++..+|..++..+..+.. ++ .-..+.
T Consensus 17 ~~~~L~s-~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~-- 93 (252)
T 4db8_A 17 MTQQLNS-DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI-- 93 (252)
T ss_dssp HHHHHHS-SCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH--
T ss_pred HHHHHcC-CCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH--
Confidence 5666655 456789999999999888733221100111233445556699999999999999998651 10 000001
Q ss_pred cccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhccc-chhHHH-HHHHHHHhhCCCCcchHHHHHHHHHH
Q 000134 230 ENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVH-SQHFLF-LLILLVEQLDNPHVTVRMNASRLIRK 307 (2096)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~-~e~~~~-~l~~Li~~L~~~n~~v~~~A~~~i~~ 307 (2096)
+...+..+-+.+.. .|+.+++..+.+++.|....... ..+... ++=.|+..|.++++-++..|..-+.+
T Consensus 94 --------~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~ 164 (252)
T 4db8_A 94 --------DAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 164 (252)
T ss_dssp --------HTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred --------HcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 11245566665554 67889999999999984322222 112211 34458899999999999999999999
Q ss_pred Hhhh
Q 000134 308 SCFF 311 (2096)
Q Consensus 308 l~~~ 311 (2096)
+|..
T Consensus 165 l~~~ 168 (252)
T 4db8_A 165 IASG 168 (252)
T ss_dssp HTTS
T ss_pred HHcC
Confidence 9754
No 142
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=93.03 E-value=0.56 Score=62.59 Aligned_cols=155 Identities=7% Similarity=-0.113 Sum_probs=110.5
Q ss_pred HHHHHhchhHHHHHHHHHHHHhhh---cCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH--hccCC----h
Q 000134 1047 ARASFRCQAYARSLMYFESHVREK---SGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----L 1117 (2096)
Q Consensus 1047 A~aA~~C~ayaRAL~ylE~~~r~~---~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~--~~~~s----l 1117 (2096)
...++.-+.|.+|+-+++..++.. ....+|. ..+.+-.+..+|..+++.|........ ...++ .
T Consensus 398 ~~~a~~~~~~~~A~~~~~~al~~~~~~~~~~~p~-------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 470 (681)
T 2pzi_A 398 VLQATVLSQPVQTLDSLRAARHGALDADGVDFSE-------SVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLV 470 (681)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTC-------CCTT-------CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHH
T ss_pred HhhcccccCHHHHHHHHHHhhhhccccccccccc-------chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHH
Confidence 345588999999999999987211 0001121 124567888999999999988776542 22222 2
Q ss_pred hHHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcC
Q 000134 1118 QDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLG 1197 (2096)
Q Consensus 1118 ~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg 1197 (2096)
......|...|++++|..+|+++++..|++...+.++=.|+..+|+|+. +.+.+..+...|+....+. ....+...+|
T Consensus 471 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~-~lg~~~~~~g 548 (681)
T 2pzi_A 471 WYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAF-GLARARSAEG 548 (681)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHH-HHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHH-HHHHHHHHcC
Confidence 2345678899999999999999999999999988888899999999998 7777766666665544333 3345677899
Q ss_pred ChhhHHHhhcccC
Q 000134 1198 RWDLMDEYLSGAD 1210 (2096)
Q Consensus 1198 ~Wd~l~~~l~~~~ 1210 (2096)
+++.-.+++..+-
T Consensus 549 ~~~~A~~~~~~al 561 (681)
T 2pzi_A 549 DRVGAVRTLDEVP 561 (681)
T ss_dssp CHHHHHHHHHTSC
T ss_pred CHHHHHHHHHhhc
Confidence 9988777666543
No 143
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=93.03 E-value=0.46 Score=60.14 Aligned_cols=116 Identities=12% Similarity=-0.001 Sum_probs=90.8
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--C---------------ChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASG--A---------------PNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~~--~---------------~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
..+..|...+....+.|+++.|.....+|..+. . ..+....|..+.+.|+..+|+..+++++.
T Consensus 266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 557789999999999999999999999987753 2 25777889999999999999999999876
Q ss_pred cCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHH
Q 000134 1410 NKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKG 1489 (2096)
Q Consensus 1410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~ 1489 (2096)
..| ..++++..+|.-+...++ .++++..|++|++++|....+
T Consensus 346 ~~p------------------------------------~~~~a~~~~g~a~~~~g~--~~~A~~~~~~al~l~P~~~~a 387 (457)
T 1kt0_A 346 LDS------------------------------------ANEKGLYRRGEAQLLMNE--FESAKGDFEKVLEVNPQNKAA 387 (457)
T ss_dssp HST------------------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTC----CH
T ss_pred cCC------------------------------------ccHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCCHHH
Confidence 211 114566667766655554 788999999999999999999
Q ss_pred HHHHHhhhHHH
Q 000134 1490 YFYMAKYCDDV 1500 (2096)
Q Consensus 1490 ~~~la~y~d~l 1500 (2096)
|..+|..+.++
T Consensus 388 ~~~l~~~~~~~ 398 (457)
T 1kt0_A 388 RLQISMCQKKA 398 (457)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887665
No 144
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=93.02 E-value=0.53 Score=45.21 Aligned_cols=95 Identities=7% Similarity=-0.015 Sum_probs=68.2
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhccCChhHHHHHh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSN 1124 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~~sl~~qil~~ 1124 (2096)
.++....+-+.|.+|+.+++..+.... ++++...+ ....+
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a~~~~~----------------------------~~~~~~~~------------~a~~~ 50 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKAIQLDP----------------------------EESKYWLM------------KGKAL 50 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHHHHHCC----------------------------CCHHHHHH------------HHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCc----------------------------CCHHHHHH------------HHHHH
Confidence 456777788888888888888665321 01111122 12345
Q ss_pred HhhcCHHHHHHHHHHHHccCCC--chhhhhhHHHHHHhc-cChHHHHHHhhhhhccCh
Q 000134 1125 KKSGNWAEVFTSCEQALQMEPT--SVQRHSDVLNCLLNM-CHLQAMVTHVDGLISRIP 1179 (2096)
Q Consensus 1125 E~~G~W~~A~~~YE~~Lq~~p~--~~~~~~glL~CL~~L-Gq~~~ll~~~~gl~~~~p 1179 (2096)
...|+|++|..+|+++++..|+ +......+-.|+..+ |+++....+.+......|
T Consensus 51 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 51 YNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 6789999999999999999998 888888888899999 999888777766555444
No 145
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=92.88 E-value=0.93 Score=53.31 Aligned_cols=151 Identities=16% Similarity=0.030 Sum_probs=102.9
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccc
Q 000134 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSIT 1425 (2096)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~ 1425 (2096)
..+.++..|..+...|+++.|...+.++.... .+.+....|.++...|+..+|+..+++++...|
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p------------- 182 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ------------- 182 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC-------------
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc-------------
Confidence 35678999999999999999999999987765 456888999999999999999999987643111
Q ss_pred ccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHH
Q 000134 1426 SLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDAR 1505 (2096)
Q Consensus 1426 ~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~~~ 1505 (2096)
...-..+..+.-+...+. .++.+..|+++++.+|....+|+.+|..|-..
T Consensus 183 -----------------------~~~~~~~~~~~~l~~~~~--~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~----- 232 (287)
T 3qou_A 183 -----------------------DTRYQGLVAQIELLXQAA--DTPEIQQLQQQVAENPEDAALATQLALQLHQV----- 232 (287)
T ss_dssp -----------------------SHHHHHHHHHHHHHHHHT--SCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-----
T ss_pred -----------------------chHHHHHHHHHHHHhhcc--cCccHHHHHHHHhcCCccHHHHHHHHHHHHHc-----
Confidence 001112222222222232 23457889999999999999999998876322
Q ss_pred hhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcch-hhhHHHHHHhhhhcC
Q 000134 1506 KRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNL-FQALPRLLTLWFDFG 1558 (2096)
Q Consensus 1506 ~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~~-~q~lpRlLtLWl~~g 1558 (2096)
| -...|+..|.+++...+.+. -+...++..++-..|
T Consensus 233 ---------g--------~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 233 ---------G--------RNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp ---------T--------CHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred ---------c--------cHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 1 12358888888888766552 233344444554444
No 146
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=92.88 E-value=0.88 Score=48.62 Aligned_cols=107 Identities=8% Similarity=-0.112 Sum_probs=84.5
Q ss_pred CCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccc
Q 000134 1343 GLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTA 1420 (2096)
Q Consensus 1343 ~~~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~ 1420 (2096)
.++++....|...+....+.|+++.|.....+|....+ +.+....+..+...|+..+|+..+++++.-.|
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-------- 101 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-------- 101 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS--------
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC--------
Confidence 34567788999999999999999999999999988754 56778889999999999999999999876322
Q ss_pred cccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchH
Q 000134 1421 ISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWE 1487 (2096)
Q Consensus 1421 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~we 1487 (2096)
.+ +.++..+|.-+...|+ .++.++.|++|+++.|.-+
T Consensus 102 -----------~~-----------------~~~~~~lg~~~~~lg~--~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 102 -----------ND-----------------YTPVFHTGQCQLRLKA--PLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp -----------SC-----------------CHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCCCHH
T ss_pred -----------CC-----------------cHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCHH
Confidence 11 2245555655555554 7889999999999998643
No 147
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=92.86 E-value=1.2 Score=50.84 Aligned_cols=133 Identities=13% Similarity=0.035 Sum_probs=97.0
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC-----ChHHHHHHHHHHH--------cCCchHHHHHHHHHhhcCCc
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASGA-----PNVHMEKAKLLWS--------TRRSDGAIAELQQNLLNKPV 1413 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~~~-----~~~~iE~AKLLW~--------~g~~~~Ai~~L~~~i~~~~~ 1413 (2096)
.....|...|.+..+.|.++.|...+.++....+ +.+....+..++. .|+..+|+..+++.++..|.
T Consensus 50 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 129 (261)
T 3qky_A 50 WAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN 129 (261)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT
T ss_pred chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC
Confidence 3467899999999999999999999999887633 3567788999999 99999999999999875442
Q ss_pred ccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc---hHHHH
Q 000134 1414 EVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM---WEKGY 1490 (2096)
Q Consensus 1414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~---weK~~ 1490 (2096)
.. ................+..++.+|......|+ .++.+..|+++++..|. -..++
T Consensus 130 ~~-------------------~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~~a~ 188 (261)
T 3qky_A 130 HE-------------------LVDDATQKIRELRAKLARKQYEAARLYERREL--YEAAAVTYEAVFDAYPDTPWADDAL 188 (261)
T ss_dssp CT-------------------THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTSTTHHHHH
T ss_pred ch-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHCCCCchHHHHH
Confidence 10 00000000001112334555777777766665 78999999999999997 56799
Q ss_pred HHHHhhhHHH
Q 000134 1491 FYMAKYCDDV 1500 (2096)
Q Consensus 1491 ~~la~y~d~l 1500 (2096)
+.+|.-|.++
T Consensus 189 ~~l~~~~~~~ 198 (261)
T 3qky_A 189 VGAMRAYIAY 198 (261)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999987655
No 148
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=92.84 E-value=0.39 Score=50.95 Aligned_cols=86 Identities=13% Similarity=0.127 Sum_probs=60.2
Q ss_pred HHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChh
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWD 1200 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd 1200 (2096)
...+...|+|++|..+|+++++..|++.....++-.|+..+|+|+..+.+.+..+...|+...-+. ....+...+|+|+
T Consensus 18 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~lg~~~~~~g~~~ 96 (164)
T 3sz7_A 18 GNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWS-RLGLARFDMADYK 96 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHccCHH
Confidence 445667888888888888888888888887778888888888888877777665555555433333 2345566778887
Q ss_pred hHHHhhc
Q 000134 1201 LMDEYLS 1207 (2096)
Q Consensus 1201 ~l~~~l~ 1207 (2096)
.-.+++.
T Consensus 97 ~A~~~~~ 103 (164)
T 3sz7_A 97 GAKEAYE 103 (164)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555443
No 149
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=92.84 E-value=0.86 Score=51.61 Aligned_cols=150 Identities=13% Similarity=0.133 Sum_probs=98.5
Q ss_pred HHHHHhhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhh-hhh-hhhhc
Q 000134 150 NIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQ-DTV-LSSLF 227 (2096)
Q Consensus 150 ~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~-~~~-~~~~~ 227 (2096)
+.+.++|-++ +.+|+..+..+|..+..+.......-.....+..+-.++.+++..+|.+++..+..+.. ++- ...+
T Consensus 47 ~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~- 124 (252)
T 4hxt_A 47 EVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI- 124 (252)
T ss_dssp HHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHH-
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH-
Confidence 3466666654 58899999999999988754321111112344555666799999999999999999751 111 0000
Q ss_pred cCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHH--HHHHHHHHhhCCCCcchHHHHHHHH
Q 000134 228 LDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFL--FLLILLVEQLDNPHVTVRMNASRLI 305 (2096)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~--~~l~~Li~~L~~~n~~v~~~A~~~i 305 (2096)
.+...+..+-+.+. ..|+.+++..+.+++.+....+...+.+. -++-.|+..|.++++.++..|..-|
T Consensus 125 ---------~~~~~i~~L~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 194 (252)
T 4hxt_A 125 ---------VDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARAL 194 (252)
T ss_dssp ---------HHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred ---------HHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHH
Confidence 11234556666444 56688999999999998542211111111 1444588899999999999999999
Q ss_pred HHHhhh
Q 000134 306 RKSCFF 311 (2096)
Q Consensus 306 ~~l~~~ 311 (2096)
.++|..
T Consensus 195 ~~l~~~ 200 (252)
T 4hxt_A 195 ANIASG 200 (252)
T ss_dssp HHHTTS
T ss_pred HHHHcC
Confidence 999763
No 150
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=92.82 E-value=1.9 Score=48.42 Aligned_cols=170 Identities=12% Similarity=-0.017 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC-----ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGA-----PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~~-----~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~ 1423 (2096)
...|...|...-+.|.++.|...+.++....+ +.+.+..|..+...|+..+|+..+++.++..|..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~--------- 74 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH--------- 74 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC---------
Confidence 35688889999999999999999999876532 2578889999999999999999999998743311
Q ss_pred ccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHhccchH
Q 000134 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYT----------------GQKQKEDVITLYSRVRELQPMWE 1487 (2096)
Q Consensus 1424 ~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~----------------~~~~~~~i~~~Y~~a~~l~~~we 1487 (2096)
.....++..+|.-.... .+.+.++.++.|+++++.+|+..
T Consensus 75 ------------------------~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~ 130 (225)
T 2yhc_A 75 ------------------------PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQ 130 (225)
T ss_dssp ------------------------TTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCT
T ss_pred ------------------------CcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCCh
Confidence 01122333343322221 12347888999999999999876
Q ss_pred HHHHH---HHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcc--hhhhHHHHHHhhhhcCc
Q 000134 1488 KGYFY---MAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN--LFQALPRLLTLWFDFGS 1559 (2096)
Q Consensus 1488 K~~~~---la~y~d~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~--~~q~lpRlLtLWl~~g~ 1559 (2096)
.++.. ++.....+-.........-... .-...|+..|-+.+..-++. ..+++.++-..+...|.
T Consensus 131 ~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~--------~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~ 199 (225)
T 2yhc_A 131 YTTDATKRLVFLKDRLAKYEYSVAEYYTER--------GAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQM 199 (225)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------CcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCC
Confidence 55432 2222211110000000000000 01236888888888654443 33566677777766664
No 151
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=92.82 E-value=0.43 Score=50.39 Aligned_cols=91 Identities=14% Similarity=0.089 Sum_probs=67.4
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhccCChhHHHHHh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSN 1124 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~~sl~~qil~~ 1124 (2096)
.++...++-|.|..|+-+++.-+... | ++++...++ ...+
T Consensus 26 ~~g~~~~~~g~~~~A~~~~~~al~~~-----p-----------------------~~~~~~~~l------------g~~~ 65 (148)
T 2vgx_A 26 SLAFNQYQSGXYEDAHXVFQALCVLD-----H-----------------------YDSRFFLGL------------GACR 65 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-----T-----------------------TCHHHHHHH------------HHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC-----c-----------------------ccHHHHHHH------------HHHH
Confidence 46777888899999999888866532 1 122333332 2235
Q ss_pred HhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhh
Q 000134 1125 KKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLI 1175 (2096)
Q Consensus 1125 E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~ 1175 (2096)
...|+|++|..+|+++++..|++......+=.|+..+|+++......+...
T Consensus 66 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 66 QAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQ 116 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 678999999999999999999998888888889999999988766655433
No 152
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=92.77 E-value=1.9 Score=49.56 Aligned_cols=27 Identities=7% Similarity=-0.042 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1383 VHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1383 ~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
+....|.++...|+..+|+..++++++
T Consensus 280 ~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 280 TLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344455555556666666665555543
No 153
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=92.77 E-value=0.4 Score=47.43 Aligned_cols=88 Identities=6% Similarity=0.045 Sum_probs=64.9
Q ss_pred HHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhh------hhHhHHHHHHHH
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYK------KTWCMQGVQAAW 1194 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~------~~~~~~~vEAAW 1194 (2096)
...+...|+|++|..+|+.+++..|++......+-.|+...|+++....+.+......|... .........+..
T Consensus 11 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 90 (131)
T 1elr_A 11 GNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYF 90 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHH
Confidence 44567899999999999999999999988888889999999999988877766544434321 112223346677
Q ss_pred hcCChhhHHHhhcc
Q 000134 1195 RLGRWDLMDEYLSG 1208 (2096)
Q Consensus 1195 rlg~Wd~l~~~l~~ 1208 (2096)
..|+|+.-.+++..
T Consensus 91 ~~~~~~~A~~~~~~ 104 (131)
T 1elr_A 91 KEEKYKDAIHFYNK 104 (131)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HhccHHHHHHHHHH
Confidence 88998877665543
No 154
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=92.74 E-value=0.71 Score=54.37 Aligned_cols=115 Identities=14% Similarity=0.069 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCh--HHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccc
Q 000134 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASGAPN--VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSIT 1425 (2096)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~all~a~~~~~~~--~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~ 1425 (2096)
....|+..|.+....|+++.|...+.++....+.. ..+..+-.+-..|+...|+..+++++...|.
T Consensus 150 ~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~------------ 217 (287)
T 3qou_A 150 NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPE------------ 217 (287)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT------------
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCc------------
Confidence 35679999999999999999999999987654422 2333333466778888999999998763221
Q ss_pred ccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccch--HHHHHHHHhhhHHH
Q 000134 1426 SLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMW--EKGYFYMAKYCDDV 1500 (2096)
Q Consensus 1426 ~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~w--eK~~~~la~y~d~l 1500 (2096)
-+.+++.+|..+...|+ .++.+..|.++++.+|.+ ..+|..+|..|+.+
T Consensus 218 ------------------------~~~~~~~la~~l~~~g~--~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 218 ------------------------DAALATQLALQLHQVGR--NEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp ------------------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred ------------------------cHHHHHHHHHHHHHccc--HHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 14467778888777776 899999999999999999 88999999988654
No 155
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=92.48 E-value=0.5 Score=48.03 Aligned_cols=59 Identities=8% Similarity=-0.088 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1351 CWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1351 ~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
.|+..+....+.|.++.|...+.+|.... .+.+....+.++...|+..+|+..+++++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 79 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM 79 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 47788888888888888888888887664 355777788888888888888888888776
No 156
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=92.41 E-value=1.5 Score=46.20 Aligned_cols=104 Identities=11% Similarity=-0.010 Sum_probs=81.6
Q ss_pred CCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccc
Q 000134 1344 LGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAI 1421 (2096)
Q Consensus 1344 ~~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~ 1421 (2096)
+.++....|...+....+.|+++.|...+.++.... .+.+....+..+...|+..+|+..+++++.-.|
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--------- 86 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI--------- 86 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---------
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC---------
Confidence 345667789999999999999999999999987765 456777889999999999999999999876221
Q ss_pred ccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Q 000134 1422 SSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM 1485 (2096)
Q Consensus 1422 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~ 1485 (2096)
.+ +.++..+|.-....|+ .++.++.|.+++++.|.
T Consensus 87 ----------~~-----------------~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 87 ----------XE-----------------PRFPFHAAECLLQXGE--LAEAESGLFLAQELIAN 121 (148)
T ss_dssp ----------TC-----------------THHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHTT
T ss_pred ----------CC-----------------chHHHHHHHHHHHcCC--HHHHHHHHHHHHHHCcC
Confidence 11 2245566666666665 78888999999998875
No 157
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=92.41 E-value=14 Score=47.26 Aligned_cols=152 Identities=14% Similarity=0.084 Sum_probs=94.2
Q ss_pred HHHHHHhhcccCccchhhHHHHHHHHHHccCCch--hhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhh-hhh-h
Q 000134 149 LNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRD--VLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQD-TVL-S 224 (2096)
Q Consensus 149 ~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~--~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~-~~~-~ 224 (2096)
-+.+-++|-.....++|..+..+|..|..|.+.. ..++. --+..|-.+|.+++..||+.++.++..+..+ +-. .
T Consensus 102 ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~--GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~ 179 (510)
T 3ul1_B 102 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG--GAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 179 (510)
T ss_dssp HHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHC--CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 4557777776667789988888999988776644 22222 1233445566999999999999999886421 110 0
Q ss_pred hhccCcccccchhhHHHHHHHHHHhhhcC----ChhHHHHHHHHHHHHHhhhcccchhH--HHHHHHHHHhhCCCCcchH
Q 000134 225 SLFLDENASSRSNELKLLDVIKLAFTAAD----DPLILETLLESTAELMMAVDVHSQHF--LFLLILLVEQLDNPHVTVR 298 (2096)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----d~~i~eTll~~~~~i~~~~~~~~e~~--~~~l~~Li~~L~~~n~~v~ 298 (2096)
.+.. ...+..+-..+...+ ...++.++..+++.+++......+.. .-++-.|+..|.++++-++
T Consensus 180 ~v~~----------~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~ 249 (510)
T 3ul1_B 180 LVIK----------HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVL 249 (510)
T ss_dssp HHHH----------TTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHH----------cCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHH
Confidence 0011 112233334333222 23356677777777754333333322 2344458888999999999
Q ss_pred HHHHHHHHHHhhhh
Q 000134 299 MNASRLIRKSCFFH 312 (2096)
Q Consensus 299 ~~A~~~i~~l~~~~ 312 (2096)
..|..-|..++...
T Consensus 250 ~~A~~aL~~L~~~~ 263 (510)
T 3ul1_B 250 ADSCWAISYLTDGP 263 (510)
T ss_dssp HHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHhhch
Confidence 99999999997643
No 158
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=92.39 E-value=2.5 Score=48.36 Aligned_cols=137 Identities=8% Similarity=0.041 Sum_probs=103.1
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCChHHHHHHHHHHH----cCCchHHHHHHHHHhhcCCccccccccccc
Q 000134 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWS----TRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2096)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~all~a~~~~~~~~~iE~AKLLW~----~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~ 1423 (2096)
....|...+.+..+.|.++.|...+.+|...+++.+....+.++.. .|+..+|+..++++++..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------------ 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------------ 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC------------
Confidence 4567899999999999999999999999988888899999999999 999999999999886520
Q ss_pred ccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHH
Q 000134 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYT--GQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVL 1501 (2096)
Q Consensus 1424 ~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~--~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~ 1501 (2096)
.+.++..+|...... .....++.++.|++|++.. ...+++.+|..|.+-.
T Consensus 73 --------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 73 --------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGK 124 (273)
T ss_dssp --------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCS
T ss_pred --------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCC
Confidence 033556666655441 1345888999999999884 5678899988774210
Q ss_pred HHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcc
Q 000134 1502 VDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2096)
Q Consensus 1502 ~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~ 1542 (2096)
...+ -...++..|-+++..|+..
T Consensus 125 ----------~~~~--------~~~~A~~~~~~a~~~~~~~ 147 (273)
T 1ouv_A 125 ----------VVTR--------DFKKAVEYFTKACDLNDGD 147 (273)
T ss_dssp ----------SSCC--------CHHHHHHHHHHHHHTTCHH
T ss_pred ----------Cccc--------CHHHHHHHHHHHHhcCcHH
Confidence 0011 1246888888888887543
No 159
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=92.27 E-value=1.6 Score=46.06 Aligned_cols=116 Identities=9% Similarity=-0.071 Sum_probs=87.9
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc------------------C--CChHHHHHHHHHHHcCCchHHHHHHHH
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQAS------------------G--APNVHMEKAKLLWSTRRSDGAIAELQQ 1406 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~------------------~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~ 1406 (2096)
..+..|...+....+.|.++.|.....+|..+ . .+.+....|..+...|+..+|+..++.
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 45778999999999999999999988887765 1 124677788999999999999999999
Q ss_pred HhhcCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccch
Q 000134 1407 NLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMW 1486 (2096)
Q Consensus 1407 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~w 1486 (2096)
++.-.| ..++++..+|.-....|+ .++.+..|++|++++|..
T Consensus 89 al~~~p------------------------------------~~~~a~~~~g~~~~~~g~--~~~A~~~~~~al~l~p~~ 130 (162)
T 3rkv_A 89 VLKREE------------------------------------TNEKALFRRAKARIAAWK--LDEAEEDLKLLLRNHPAA 130 (162)
T ss_dssp HHHHST------------------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCGGG
T ss_pred HHhcCC------------------------------------cchHHHHHHHHHHHHHhc--HHHHHHHHHHHHhcCCCC
Confidence 876211 115567777776666664 788899999999999987
Q ss_pred H-HHHHHHHhhhHHH
Q 000134 1487 E-KGYFYMAKYCDDV 1500 (2096)
Q Consensus 1487 e-K~~~~la~y~d~l 1500 (2096)
. .....++.-..++
T Consensus 131 ~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 131 ASVVAREMKIVTERR 145 (162)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 6 4455665554433
No 160
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=92.25 E-value=0.31 Score=52.93 Aligned_cols=85 Identities=16% Similarity=0.251 Sum_probs=66.0
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHHccCCC-------chh-----hhhhHHHHHHhccChHHHHHHhhhhhcc-------Ch
Q 000134 1119 DELLSNKKSGNWAEVFTSCEQALQMEPT-------SVQ-----RHSDVLNCLLNMCHLQAMVTHVDGLISR-------IP 1179 (2096)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~-------~~~-----~~~glL~CL~~LGq~~~ll~~~~gl~~~-------~p 1179 (2096)
.....+.+.|+|++|..+|+++|+..|+ +.. .+.+.=.|+.++|+|+..+...+..+.. .|
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 3455677899999999999999999998 443 5667778999999999988888776666 78
Q ss_pred hhhhhH----hHHHHHHHHhcCChhhHHH
Q 000134 1180 QYKKTW----CMQGVQAAWRLGRWDLMDE 1204 (2096)
Q Consensus 1180 ~~~~~~----~~~~vEAAWrlg~Wd~l~~ 1204 (2096)
++...| +..+. |--.+|+++.--+
T Consensus 96 d~~~A~~~~~~~rG~-aL~~lgr~eEAl~ 123 (159)
T 2hr2_A 96 DEGKLWISAVYSRAL-ALDGLGRGAEAMP 123 (159)
T ss_dssp THHHHHHHHHHHHHH-HHHHTTCHHHHHH
T ss_pred chHHHHHHHHHhHHH-HHHHCCCHHHHHH
Confidence 777767 54443 6667888876443
No 161
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=92.16 E-value=0.46 Score=47.36 Aligned_cols=83 Identities=12% Similarity=0.235 Sum_probs=42.3
Q ss_pred HhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChhhH
Q 000134 1123 SNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLM 1202 (2096)
Q Consensus 1123 ~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd~l 1202 (2096)
.+...|+|++|..+|+++++..|++......+-.|+...|+++..+.+.+......|.....+. ....+....|+|+.-
T Consensus 25 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-~la~~~~~~~~~~~A 103 (133)
T 2lni_A 25 ECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYT-RKAAALEAMKDYTKA 103 (133)
T ss_dssp HHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHH-HHHHHHHHHhhHHHH
Confidence 3445666666666666666666665555555555666666666555554443333332222111 222344555665554
Q ss_pred HHhh
Q 000134 1203 DEYL 1206 (2096)
Q Consensus 1203 ~~~l 1206 (2096)
.+++
T Consensus 104 ~~~~ 107 (133)
T 2lni_A 104 MDVY 107 (133)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 162
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=92.13 E-value=1.9 Score=50.12 Aligned_cols=160 Identities=10% Similarity=0.027 Sum_probs=105.2
Q ss_pred CChhhHHHHHHHhhcccCccchhhHHHHHHHHHHccCC-chhhhhhhhHHH-HHHHHHhhcccHHHHHHHHHHHhHhhhh
Q 000134 143 SDFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGT-RDVLLKTRSEWI-KCIEFLLLNKRKAIRDAFCTQIGYFLQD 220 (2096)
Q Consensus 143 ~~~~~~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~-~~~~~~~~~~w~-~~~~~~~~~~~r~vR~a~~~~~~~~~~~ 220 (2096)
.+|.++-..+-+.|-..+.-.|+.+...+|..+..+.. ...--.-....+ ..++.+ .|+...||.++..++..|+++
T Consensus 56 ~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l-~dkk~~V~~aa~~al~~i~~~ 134 (249)
T 2qk1_A 56 QNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRT-KEKKPSVIEAIRKALLTICKY 134 (249)
T ss_dssp CCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGG-GCCCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHH
Confidence 35666655566665455666677777888888877655 332101011112 344555 899999999999999998732
Q ss_pred hhhhhhccCccc-ccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhH-----HHHHHHHHHhhCCCC
Q 000134 221 TVLSSLFLDENA-SSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHF-----LFLLILLVEQLDNPH 294 (2096)
Q Consensus 221 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~-----~~~l~~Li~~L~~~n 294 (2096)
- +. .....-..++..+..++... +|++++..+..++++..+.....+-| ...+=.|...|..++
T Consensus 135 ~---------~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~ 204 (249)
T 2qk1_A 135 Y---------DPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQ 204 (249)
T ss_dssp S---------CTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSS
T ss_pred c---------cccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCC
Confidence 1 11 11112456888898877655 89999999999999866542211322 122234888889999
Q ss_pred cchHHHHHHHHHHHhhhhc
Q 000134 295 VTVRMNASRLIRKSCFFHL 313 (2096)
Q Consensus 295 ~~v~~~A~~~i~~l~~~~~ 313 (2096)
+-||..|+.-+-.+++.-.
T Consensus 205 ~~VR~aA~~~l~~i~~~vG 223 (249)
T 2qk1_A 205 PAIRTIGFESFAILIKIFG 223 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 9999999999999976653
No 163
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=91.98 E-value=4.2 Score=45.82 Aligned_cols=148 Identities=12% Similarity=0.124 Sum_probs=96.8
Q ss_pred HHHhhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhh-h-hhhhhccC
Q 000134 152 YFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQD-T-VLSSLFLD 229 (2096)
Q Consensus 152 ~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~-~-~~~~~~~~ 229 (2096)
+.++|-.+. .+++..+...|..+..+.......-....-+..|-.+|.+++..+|..++..+..+..+ + .-..+.
T Consensus 7 L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-- 83 (252)
T 4hxt_A 7 LVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV-- 83 (252)
T ss_dssp HHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH--
T ss_pred HHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH--
Confidence 556665544 88999999999999988652211001122344555666999999999999999987521 1 100011
Q ss_pred cccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHH--HHHHHHHHhhCCCCcchHHHHHHHHHH
Q 000134 230 ENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFL--FLLILLVEQLDNPHVTVRMNASRLIRK 307 (2096)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~--~~l~~Li~~L~~~n~~v~~~A~~~i~~ 307 (2096)
+...+..+-+.+. ..|+.+++..+.+++.+....+...+.+. -++-.|+..|.++++-++..|..-|.+
T Consensus 84 --------~~~~i~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~ 154 (252)
T 4hxt_A 84 --------DAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALAN 154 (252)
T ss_dssp --------HTTHHHHHHHHTT-CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred --------HCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 1134555666444 46788999999999998532211112111 134558899999999999999999999
Q ss_pred Hhhh
Q 000134 308 SCFF 311 (2096)
Q Consensus 308 l~~~ 311 (2096)
+|..
T Consensus 155 l~~~ 158 (252)
T 4hxt_A 155 IASG 158 (252)
T ss_dssp HTTS
T ss_pred HHcC
Confidence 9654
No 164
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=91.96 E-value=2.5 Score=47.81 Aligned_cols=110 Identities=15% Similarity=0.030 Sum_probs=85.8
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000134 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2096)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~ 1423 (2096)
......|...+.+..+.|+++.|...+.+|.... .+.+....|.+++..|+..+|+..++++++..|
T Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~----------- 108 (275)
T 1xnf_A 40 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP----------- 108 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------
T ss_pred chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCc-----------
Confidence 4567889999999999999999999999998775 356788899999999999999999999876321
Q ss_pred ccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHH
Q 000134 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYM 1493 (2096)
Q Consensus 1424 ~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~l 1493 (2096)
.+ +.++..+|......|+ .++.++.|++++++.|.....+...
T Consensus 109 --------~~-----------------~~~~~~la~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~ 151 (275)
T 1xnf_A 109 --------TY-----------------NYAHLNRGIALYYGGR--DKLAQDDLLAFYQDDPNDPFRSLWL 151 (275)
T ss_dssp --------TC-----------------THHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred --------cc-----------------cHHHHHHHHHHHHhcc--HHHHHHHHHHHHHhCCCChHHHHHH
Confidence 00 2345555665555554 7889999999999999876444433
No 165
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=91.96 E-value=8.9 Score=49.23 Aligned_cols=153 Identities=14% Similarity=0.086 Sum_probs=93.1
Q ss_pred HHHHHHHhhcccCccchhhHHHHHHHHHHccCCch--hhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhh-hhh-
Q 000134 148 LLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRD--VLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQD-TVL- 223 (2096)
Q Consensus 148 ~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~--~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~-~~~- 223 (2096)
.-+.+.++|-.....++|..+..+|..|..|.+.. ..+.. --+..|-.+|.+++..||+.++.++..+..+ +-.
T Consensus 120 ~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~--Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r 197 (529)
T 3tpo_A 120 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG--GAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFR 197 (529)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC--CCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHH
Confidence 34557777776777888888888999998887644 22221 1233445577999999999999999886411 110
Q ss_pred hhhccCcccccchhhHHHHHHHHHHhhhcC----ChhHHHHHHHHHHHHHhhhcccchhH--HHHHHHHHHhhCCCCcch
Q 000134 224 SSLFLDENASSRSNELKLLDVIKLAFTAAD----DPLILETLLESTAELMMAVDVHSQHF--LFLLILLVEQLDNPHVTV 297 (2096)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----d~~i~eTll~~~~~i~~~~~~~~e~~--~~~l~~Li~~L~~~n~~v 297 (2096)
+.+... ..+..+-..+.... ...++..+..+++.+++......+.. .-++=.|+..|.++++-+
T Consensus 198 ~~i~~~----------g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v 267 (529)
T 3tpo_A 198 DLVIKH----------GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEV 267 (529)
T ss_dssp HHHHHT----------TCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHH
T ss_pred HHHHHc----------CCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHH
Confidence 000111 12223333333222 22356666677777654332222222 223445888889999999
Q ss_pred HHHHHHHHHHHhhhh
Q 000134 298 RMNASRLIRKSCFFH 312 (2096)
Q Consensus 298 ~~~A~~~i~~l~~~~ 312 (2096)
+..|..-|..++...
T Consensus 268 ~~~a~~aL~~l~~~~ 282 (529)
T 3tpo_A 268 LADSCWAISYLTDGP 282 (529)
T ss_dssp HHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHhhhhh
Confidence 999999998887644
No 166
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=91.95 E-value=0.83 Score=47.52 Aligned_cols=88 Identities=11% Similarity=0.106 Sum_probs=58.6
Q ss_pred HHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCCh
Q 000134 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRW 1199 (2096)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~W 1199 (2096)
....+...|+|++|..+|+++++..|++.....++-.|+..+|+|+..+.+.+......|.....+. ....+...+|++
T Consensus 19 ~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~a~~~~~~~~~ 97 (166)
T 1a17_A 19 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY-RRAASNMALGKF 97 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHTTCH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH-HHHHHHHHhccH
Confidence 3455667888888888888888888888777777778888888888777766655444444322222 223455667777
Q ss_pred hhHHHhhcc
Q 000134 1200 DLMDEYLSG 1208 (2096)
Q Consensus 1200 d~l~~~l~~ 1208 (2096)
+.-.+++..
T Consensus 98 ~~A~~~~~~ 106 (166)
T 1a17_A 98 RAALRDYET 106 (166)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766555443
No 167
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=91.88 E-value=2.1 Score=46.83 Aligned_cols=135 Identities=7% Similarity=0.005 Sum_probs=95.1
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH--hccCC----hh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----LQ 1118 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~--~~~~s----l~ 1118 (2096)
.++....+-+.|..|+-+++..+. + ....+..+..+|..+++.+........ ...+. ..
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~~-------~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 75 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQD-------P--------HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYF 75 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSSS-------C--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcC-------C--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHH
Confidence 467888889999999999987531 1 124567889999999999887776542 11221 22
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHHccCCCch----------------hhhhhHHHHHHhccChHHHHHHhhhhhccChhhh
Q 000134 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSV----------------QRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYK 1182 (2096)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~----------------~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~ 1182 (2096)
.....|...|++++|..+|+.+++..|++. .....+-.|+..+|+++....+.+......|+..
T Consensus 76 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 76 QRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 345667889999999999999999877655 5666777888899999988887776666656543
Q ss_pred hhHhHHHHHHHH
Q 000134 1183 KTWCMQGVQAAW 1194 (2096)
Q Consensus 1183 ~~~~~~~vEAAW 1194 (2096)
......+++..+
T Consensus 156 ~~~~~~a~~~~~ 167 (213)
T 1hh8_A 156 HSKIDKAMECVW 167 (213)
T ss_dssp GGHHHHHHHHHH
T ss_pred cchHHHHHHHHH
Confidence 333333444433
No 168
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=91.85 E-value=1.6 Score=48.53 Aligned_cols=59 Identities=12% Similarity=0.012 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1351 CWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1351 ~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
.+...+.+..+.|+++.|...+.+|.... .+.+....+.++...|+..+|+..++++++
T Consensus 56 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 56 LATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34558999999999999999999998875 456888999999999999999999999986
No 169
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=91.81 E-value=1.4 Score=48.74 Aligned_cols=151 Identities=13% Similarity=0.089 Sum_probs=96.5
Q ss_pred HHHHHHhhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhh-hh-hhhhh
Q 000134 149 LNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQ-DT-VLSSL 226 (2096)
Q Consensus 149 ~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~-~~-~~~~~ 226 (2096)
-+.+.++|. ..+.+|+..+...|..+..+.......-....-+..|-.+|.+++..+|.+++.++..+.. ++ ....+
T Consensus 14 ~~~l~~LL~-s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (210)
T 4db6_A 14 LPQMVQQLN-SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (210)
T ss_dssp HHHHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hHHHHHHhc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 345666665 4578999999999999987755331100111223445556699999999999999998651 11 11111
Q ss_pred ccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchh-HH-HHHHHHHHhhCCCCcchHHHHHHH
Q 000134 227 FLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQH-FL-FLLILLVEQLDNPHVTVRMNASRL 304 (2096)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~-~~-~~l~~Li~~L~~~n~~v~~~A~~~ 304 (2096)
+. ...+..+-+.+. ..|+.+++..+.+++.|........+. .. -++=.|++.|.++++-++..|..-
T Consensus 93 ~~----------~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~a 161 (210)
T 4db6_A 93 ID----------AGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 161 (210)
T ss_dssp HH----------TTCHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HH----------CCCHHHHHHHHc-CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 11 113445555443 457889999999999985322111111 11 134458888999999999999999
Q ss_pred HHHHhhh
Q 000134 305 IRKSCFF 311 (2096)
Q Consensus 305 i~~l~~~ 311 (2096)
|.++|..
T Consensus 162 L~~l~~~ 168 (210)
T 4db6_A 162 LSNIASG 168 (210)
T ss_dssp HHHHHTS
T ss_pred HHHHHcC
Confidence 9999865
No 170
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=91.80 E-value=0.93 Score=51.73 Aligned_cols=150 Identities=12% Similarity=0.086 Sum_probs=98.5
Q ss_pred HHHHHhhcccCccchhhHHHHHHHHHHccCCch--hhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhc
Q 000134 150 NIYFEFLYDESSEEVQLSCVRVIRRILVHGTRD--VLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLF 227 (2096)
Q Consensus 150 ~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~--~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~ 227 (2096)
+.+.++|-++. .+|+..+...|..+..+.... ..++ ..-+..|-.+|.+++..||..++.++..+..++-..
T Consensus 57 ~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~--- 130 (252)
T 4db8_A 57 PALVQLLSSPN-EQILQEALWALSNIASGGNEQIQAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--- 130 (252)
T ss_dssp HHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH---
T ss_pred HHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHHHHHH--cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchH---
Confidence 44667776654 889999999999998865533 1111 123345556679999999999999999975211100
Q ss_pred cCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhH--HHHHHHHHHhhCCCCcchHHHHHHHH
Q 000134 228 LDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHF--LFLLILLVEQLDNPHVTVRMNASRLI 305 (2096)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~--~~~l~~Li~~L~~~n~~v~~~A~~~i 305 (2096)
-..-.....+..+-+.+. ..|+.+++..+.+++.+....+...+.+ .-++-.|++.|.++++.++..|..-|
T Consensus 131 -----~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 204 (252)
T 4db8_A 131 -----IQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 204 (252)
T ss_dssp -----HHHHHHTTHHHHHHHGGG-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred -----HHHHHHCCCHHHHHHHHh-CCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHH
Confidence 000111235566666554 4588899999999999854221111111 11244588999999999999999999
Q ss_pred HHHhhh
Q 000134 306 RKSCFF 311 (2096)
Q Consensus 306 ~~l~~~ 311 (2096)
.++|..
T Consensus 205 ~~l~~~ 210 (252)
T 4db8_A 205 SNIASG 210 (252)
T ss_dssp HHHTTS
T ss_pred HHHhcC
Confidence 999753
No 171
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=91.80 E-value=2.2 Score=47.81 Aligned_cols=156 Identities=11% Similarity=0.035 Sum_probs=106.8
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH--hccCChh----
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLSLQ---- 1118 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~--~~~~sl~---- 1118 (2096)
.+|...++-|.|.+|+-++|..+...+.+ + ...+.+-.|..+|-..++.+........ ...|+-.
T Consensus 9 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~--~-------~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~ 79 (225)
T 2yhc_A 9 ATAQQKLQDGNWRQAITQLEALDNRYPFG--P-------YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY 79 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTS--T-------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC--h-------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHH
Confidence 35778888999999999999987753211 1 1123456788999999999977776542 2222211
Q ss_pred ---HHHHHhH------------------hhcCHHHHHHHHHHHHccCCCchhhh-----------------hhHHHHHHh
Q 000134 1119 ---DELLSNK------------------KSGNWAEVFTSCEQALQMEPTSVQRH-----------------SDVLNCLLN 1160 (2096)
Q Consensus 1119 ---~qil~~E------------------~~G~W~~A~~~YE~~Lq~~p~~~~~~-----------------~glL~CL~~ 1160 (2096)
.....+. ..|++++|...|+.+++..|++.... ..+-.++.+
T Consensus 80 a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~ 159 (225)
T 2yhc_A 80 VMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTE 159 (225)
T ss_dssp HHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222 36899999999999999999875332 234456778
Q ss_pred ccChHHHHHHhhhhhccChhhh--hhHhHHHHHHHHhcCChhhHHHhhccc
Q 000134 1161 MCHLQAMVTHVDGLISRIPQYK--KTWCMQGVQAAWRLGRWDLMDEYLSGA 1209 (2096)
Q Consensus 1161 LGq~~~ll~~~~gl~~~~p~~~--~~~~~~~vEAAWrlg~Wd~l~~~l~~~ 1209 (2096)
.|+++..+...+.+....|+.. .+......++-..+|+++.-.+++...
T Consensus 160 ~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 160 RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 8999999888888777766532 223334567888899998877766543
No 172
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=91.69 E-value=0.46 Score=49.34 Aligned_cols=85 Identities=7% Similarity=0.043 Sum_probs=59.9
Q ss_pred HHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChh
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWD 1200 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd 1200 (2096)
...+...|+|++|..+|+.+++..|++.....++=.|+..+|+++..+...+......|+....+. ....+...+|+++
T Consensus 25 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~lg~~~~~~g~~~ 103 (142)
T 2xcb_A 25 GFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPF-HAAECHLQLGDLD 103 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHH-HHHHHHHHTTCHH
T ss_pred HHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHH-HHHHHHHHcCCHH
Confidence 445667888888888888888888888888878888888888888877776665554454332222 3345667788887
Q ss_pred hHHHhh
Q 000134 1201 LMDEYL 1206 (2096)
Q Consensus 1201 ~l~~~l 1206 (2096)
.-.+++
T Consensus 104 ~A~~~~ 109 (142)
T 2xcb_A 104 GAESGF 109 (142)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
No 173
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=91.58 E-value=0.53 Score=47.69 Aligned_cols=85 Identities=13% Similarity=0.027 Sum_probs=59.9
Q ss_pred HHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChh
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWD 1200 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd 1200 (2096)
...+...|+|++|..+|+.+++..|++.....++-.|+..+|+|+..+.+.+......|+...-+. ....+...+|+|+
T Consensus 16 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-~l~~~~~~~~~~~ 94 (137)
T 3q49_B 16 GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF-FLGQCQLEMESYD 94 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHTTCHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHH-HHHHHHHHHhhHH
Confidence 345667888888888888888888888888888888888888888877776665555554333332 2334566778887
Q ss_pred hHHHhh
Q 000134 1201 LMDEYL 1206 (2096)
Q Consensus 1201 ~l~~~l 1206 (2096)
.-.+++
T Consensus 95 ~A~~~~ 100 (137)
T 3q49_B 95 EAIANL 100 (137)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655443
No 174
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=91.55 E-value=0.56 Score=61.86 Aligned_cols=247 Identities=13% Similarity=0.068 Sum_probs=151.3
Q ss_pred hcccchhhhhhhhhhchhhhhhhcCccchHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCccccccccccccccccc
Q 000134 12 ALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDKNACKLLL 91 (2096)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (2096)
.|+|.++.||..|+-+|--|. ++.+...+...+....++.+.-|||.-+.++|-+.-.+... +.+....-+++..
T Consensus 115 DL~~~n~~vr~lAL~~L~~i~---~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~--v~~~~~~l~~lL~ 189 (618)
T 1w63_A 115 DLNHSTQFVQGLALCTLGCMG---SSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPEL--MEMFLPATKNLLN 189 (618)
T ss_dssp HHSCSSSHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGG--GGGGGGGTTTSTT
T ss_pred hcCCCCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHH--HHHHHHHHHHHhC
Confidence 567999999999999988776 67888888888888888999999999999998887654311 1111111122222
Q ss_pred ccccccccccHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhcc-------------
Q 000134 92 NVEDDILSQTVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYD------------- 158 (2096)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------------- 158 (2096)
| .| +.-+..++.-+ |.+|... .+....|..+-+.++++|.+
T Consensus 190 D-~d---~~V~~~Al~~L-~~i~~~~---------------------~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~ 243 (618)
T 1w63_A 190 E-KN---HGVLHTSVVLL-TEMCERS---------------------PDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVS 243 (618)
T ss_dssp C-CC---HHHHHHHHHHH-HHHCCSH---------------------HHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSS
T ss_pred C-CC---HhHHHHHHHHH-HHHHHhC---------------------hHHHHHHHHHHHHHHHHHHHHHcCCCCcccccc
Confidence 2 11 11111111000 1112111 00011233344445555543
Q ss_pred -cCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHh------hcccHHHHHHHHHHHhHhhhhhhhhhhccCcc
Q 000134 159 -ESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLL------LNKRKAIRDAFCTQIGYFLQDTVLSSLFLDEN 231 (2096)
Q Consensus 159 -~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~------~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~ 231 (2096)
-+++-.|+.+++.|+.+..+.... ......+|..++ .|.+.+|...+++++-.+-
T Consensus 244 ~~~~~~~q~~il~~L~~l~~~~~~~-----~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~------------- 305 (618)
T 1w63_A 244 GISDPFLQVRILRLLRILGRNDDDS-----SEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIK------------- 305 (618)
T ss_dssp SSSCHHHHHHHHHHHHHHTTTCHHH-----HHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSC-------------
T ss_pred CCCCChHHHHHHHHHHHhCCCCHHH-----HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcC-------------
Confidence 246777888889888887763311 122334555553 3567789988888776521
Q ss_pred cccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhh
Q 000134 232 ASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFF 311 (2096)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~ 311 (2096)
+...-...+...+.. |...+|+.++...|.+++.|+.. +.+.+.-..-.++..|.+++..||..|...+..+|..
T Consensus 306 -~~~~l~~~a~~~L~~-~L~~~d~~vr~~aL~~L~~i~~~---~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~ 380 (618)
T 1w63_A 306 -SESGLRVLAINILGR-FLLNNDKNIRYVALTSLLKTVQT---DHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNG 380 (618)
T ss_dssp -CCHHHHHHHHHHHHH-HHTCSSTTTHHHHHHHHHHHHHH---HHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCS
T ss_pred -CCHHHHHHHHHHHHH-HHhCCCCchHHHHHHHHHHHHhh---CHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccc
Confidence 111112345556665 34457889999999999999543 3444444455788889999999999999999999654
Q ss_pred h
Q 000134 312 H 312 (2096)
Q Consensus 312 ~ 312 (2096)
.
T Consensus 381 ~ 381 (618)
T 1w63_A 381 N 381 (618)
T ss_dssp S
T ss_pred c
Confidence 3
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=91.53 E-value=0.55 Score=46.98 Aligned_cols=89 Identities=13% Similarity=0.115 Sum_probs=62.9
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHHccCCCch---hhhhhHHHHHHhccChHHHHHHhhhhhccChhhh--hhHhHHHHHHH
Q 000134 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSV---QRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYK--KTWCMQGVQAA 1193 (2096)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~---~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~--~~~~~~~vEAA 1193 (2096)
.....+...|+|++|...|+.+++..|++. .....+-.|+...|+++....+.+......|+.. .........+.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 345567788999999999999999888876 5666777888899999988887776665555431 11122334566
Q ss_pred HhcCChhhHHHhhc
Q 000134 1194 WRLGRWDLMDEYLS 1207 (2096)
Q Consensus 1194 Wrlg~Wd~l~~~l~ 1207 (2096)
..+|+|+.-.+++.
T Consensus 87 ~~~g~~~~A~~~~~ 100 (129)
T 2xev_A 87 YGEGKNTEAQQTLQ 100 (129)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 77888877655543
No 176
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=91.46 E-value=0.45 Score=48.78 Aligned_cols=59 Identities=7% Similarity=0.134 Sum_probs=49.9
Q ss_pred HHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccCh
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIP 1179 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p 1179 (2096)
...+.+.|+|++|..+|+++++..|++.....++=.|+..+|+|+..+...+..+...|
T Consensus 15 G~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~ 73 (127)
T 4gcn_A 15 GNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR 73 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCc
Confidence 34577899999999999999999999999988888999999999988877765444334
No 177
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=91.31 E-value=1.1 Score=48.23 Aligned_cols=46 Identities=7% Similarity=-0.065 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccch--HHHHHHHHhhhH
Q 000134 1451 AKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMW--EKGYFYMAKYCD 1498 (2096)
Q Consensus 1451 Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~w--eK~~~~la~y~d 1498 (2096)
+.+++.+|..+...|+ .++.+..|.++++.+|.+ ..+|+.+|..+.
T Consensus 108 ~~~~~~la~~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~ 155 (176)
T 2r5s_A 108 FELACELAVQYNQVGR--DEEALELLWNILKVNLGAQDGEVKKTFMDILS 155 (176)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccc--HHHHHHHHHHHHHhCcccChHHHHHHHHHHHH
Confidence 3456666666665554 677777777777777766 346777765553
No 178
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=91.19 E-value=1.4 Score=47.81 Aligned_cols=108 Identities=18% Similarity=0.103 Sum_probs=82.8
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC-------h-------HHHHHHHHHHHcCCchHHHHHHHHHhhcCC
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASGAP-------N-------VHMEKAKLLWSTRRSDGAIAELQQNLLNKP 1412 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~~~~-------~-------~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~ 1412 (2096)
..+..|+..+....+.|+++.|..+-.+|..+.+. . +....+-.+.+.|+..+|+...+++|.-++
T Consensus 9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 34678999999999999999999999998877544 1 777888999999999999999999876200
Q ss_pred cccccccccccccccCCCCCCCCCcccccccchhchhHHHHH----HHHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Q 000134 1413 VEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTL----LLYSRWIHYTGQKQKEDVITLYSRVRELQPM 1485 (2096)
Q Consensus 1413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~----LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~ 1485 (2096)
...+.++..++++ .-+|.-+...|+ .++.+..|++|+++.|.
T Consensus 89 -----------------------------~~~e~~pd~~~A~~~~~~~rG~aL~~lgr--~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 89 -----------------------------RRGELNQDEGKLWISAVYSRALALDGLGR--GAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp -----------------------------HHCCTTSTHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHH
T ss_pred -----------------------------ccccCCCchHHHHHHHHHhHHHHHHHCCC--HHHHHHHHHHHHhcCCC
Confidence 0001122335666 777777776665 88999999999999874
No 179
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=91.08 E-value=0.88 Score=50.43 Aligned_cols=147 Identities=11% Similarity=0.109 Sum_probs=97.6
Q ss_pred HHHHHhhcccCccchhhHHHHHHHHHHccCCch--hhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhh--hhhh
Q 000134 150 NIYFEFLYDESSEEVQLSCVRVIRRILVHGTRD--VLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDT--VLSS 225 (2096)
Q Consensus 150 ~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~--~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~--~~~~ 225 (2096)
+.+.++|.++ +.+|+-.++.+|..+..+.... ..++ ..-+..|-.+|.+++..+|..++.++..+..+. ....
T Consensus 57 ~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 133 (210)
T 4db6_A 57 PALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133 (210)
T ss_dssp HHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHH--CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4466777665 7789999999999998765432 1111 123345555669999999999999999975110 0000
Q ss_pred hccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhH-H-HHHHHHHHhhCCCCcchHHHHHH
Q 000134 226 LFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHF-L-FLLILLVEQLDNPHVTVRMNASR 303 (2096)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~-~-~~l~~Li~~L~~~n~~v~~~A~~ 303 (2096)
+. ....+..+-+.+.. .|+.+++..+.+++.++.......+.+ . -++=.|+..|.++++-++..|..
T Consensus 134 ~~----------~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~ 202 (210)
T 4db6_A 134 VI----------DAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQE 202 (210)
T ss_dssp HH----------HTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHH
T ss_pred HH----------HcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHH
Confidence 11 12356666665544 588899999999999854311122221 1 13445888899999999999999
Q ss_pred HHHHHhh
Q 000134 304 LIRKSCF 310 (2096)
Q Consensus 304 ~i~~l~~ 310 (2096)
-|.++|.
T Consensus 203 aL~~l~~ 209 (210)
T 4db6_A 203 ALEKLQS 209 (210)
T ss_dssp HHHHHCC
T ss_pred HHHHHhc
Confidence 9988864
No 180
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=91.05 E-value=5.1 Score=45.77 Aligned_cols=135 Identities=11% Similarity=0.049 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHH----cCChHHHHHHHHHHhhcCCChHHHHHHHHHHH----cCCchHHHHHHHHHhhcCCcccccccc
Q 000134 1349 GNCWLQYAKLCRL----AGHYETATRAILEAQASGAPNVHMEKAKLLWS----TRRSDGAIAELQQNLLNKPVEVVGSTA 1420 (2096)
Q Consensus 1349 ~~~WL~~AklARK----ag~~~~A~~all~a~~~~~~~~~iE~AKLLW~----~g~~~~Ai~~L~~~i~~~~~~~~~~~~ 1420 (2096)
...|...+.+... .|.++.|...+.+|...+.+.+....+.++.. .|+..+|+..++++++..+
T Consensus 74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~-------- 145 (273)
T 1ouv_A 74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND-------- 145 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCc--------
Confidence 4567778888888 88999999888888888888888888888888 8889999998888765210
Q ss_pred cccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccchHHHHHHHHhhhH
Q 000134 1421 ISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTG--QKQKEDVITLYSRVRELQPMWEKGYFYMAKYCD 1498 (2096)
Q Consensus 1421 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~--~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d 1498 (2096)
+.++..+|....... ..+.++.++.|++|++..+ ..+++.+|..|.
T Consensus 146 ------------------------------~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~ 193 (273)
T 1ouv_A 146 ------------------------------GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKD--SPGCFNAGNMYH 193 (273)
T ss_dssp ------------------------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred ------------------------------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHH
Confidence 224455555554411 4457788888888887743 467777777663
Q ss_pred HHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCc
Q 000134 1499 DVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHK 1541 (2096)
Q Consensus 1499 ~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~ 1541 (2096)
.-. ...+ -...++..|-+++..|+.
T Consensus 194 ~g~----------~~~~--------~~~~A~~~~~~a~~~~~~ 218 (273)
T 1ouv_A 194 HGE----------GATK--------NFKEALARYSKACELENG 218 (273)
T ss_dssp HTC----------SSCC--------CHHHHHHHHHHHHHTTCH
T ss_pred cCC----------CCCc--------cHHHHHHHHHHHHhCCCH
Confidence 210 0000 123577777777777664
No 181
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=90.95 E-value=0.7 Score=44.32 Aligned_cols=89 Identities=19% Similarity=0.165 Sum_probs=68.4
Q ss_pred HHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChh--hhhhHhHHHHHHHHhc-
Q 000134 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ--YKKTWCMQGVQAAWRL- 1196 (2096)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~--~~~~~~~~~vEAAWrl- 1196 (2096)
....+...|+|++|..+|+++++..|++.....++-.|+..+|+++......+......|. ...- ......+.-.+
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~l~~~~~~~~ 90 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDV-WAAKADALRYIE 90 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHH-HHHHHHHHTTCS
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHH-HHHHHHHHHHHh
Confidence 4556778999999999999999999999888888889999999999888877766555554 3222 22344566778
Q ss_pred CChhhHHHhhccc
Q 000134 1197 GRWDLMDEYLSGA 1209 (2096)
Q Consensus 1197 g~Wd~l~~~l~~~ 1209 (2096)
|+|+.-.+++...
T Consensus 91 ~~~~~A~~~~~~~ 103 (112)
T 2kck_A 91 GKEVEAEIAEARA 103 (112)
T ss_dssp SCSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9998877776554
No 182
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=90.75 E-value=2.9 Score=48.68 Aligned_cols=56 Identities=14% Similarity=0.048 Sum_probs=36.8
Q ss_pred HHHhhhcccchhhhhhhhhhchhhhhhhcCccchHHHHHHHhhhchhhhhhhhhhccchhhhh
Q 000134 7 EILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFPISFGFL 69 (2096)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (2096)
+.+--.|.|+...||..|+..+--+- ++. ....|..+.++....|+......||.+
T Consensus 26 ~~L~~~L~~~~~~vr~~A~~~L~~~~---~~~----~~~~L~~~l~d~~~~vR~~A~~aL~~l 81 (280)
T 1oyz_A 26 DELFRLLDDHNSLKRISSARVLQLRG---GQD----AVRLAIEFCSDKNYIRRDIGAFILGQI 81 (280)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHC---CHH----HHHHHHHHHTCSSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHccC---Cch----HHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 33445678888999999887765442 443 444444455566677888877777765
No 183
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.66 E-value=0.69 Score=47.07 Aligned_cols=85 Identities=22% Similarity=0.198 Sum_probs=52.0
Q ss_pred HHHhHhhcCHHHHHHHHHHHHccCCCc---hhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcC
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQMEPTS---VQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLG 1197 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~---~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg 1197 (2096)
...+...|+|++|..+|+.+++..|++ ......+-.|+..+|+|+..+...+......|+...-+. ....+....|
T Consensus 35 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~a~~~~~~~ 113 (148)
T 2dba_A 35 GNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY-RRSQALEKLG 113 (148)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH-HHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH-HHHHHHHHcC
Confidence 344567777888888888777777776 555666677777777777766666554444443322222 2334556677
Q ss_pred ChhhHHHhh
Q 000134 1198 RWDLMDEYL 1206 (2096)
Q Consensus 1198 ~Wd~l~~~l 1206 (2096)
+|+.-.+++
T Consensus 114 ~~~~A~~~~ 122 (148)
T 2dba_A 114 RLDQAVLDL 122 (148)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 776654443
No 184
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=90.53 E-value=57 Score=43.32 Aligned_cols=132 Identities=9% Similarity=0.055 Sum_probs=85.9
Q ss_pred hHHHHHHHHHHHHHcCChHHHH-HHHHHHhhcCCC--hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000134 1348 VGNCWLQYAKLCRLAGHYETAT-RAILEAQASGAP--NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2096)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~-~all~a~~~~~~--~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~ 1424 (2096)
..+.|+.+|++....|..+.|. ..+.+|....+. .+.+.+|++.+..|+..+|-.+++++++..+..... +
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~------~ 415 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAA------L 415 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH------H
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhh------h
Confidence 4679999999999999998886 777778765543 357899999999999999999999988632110000 0
Q ss_pred cccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-ccchHHHHHHHHh
Q 000134 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVREL-QPMWEKGYFYMAK 1495 (2096)
Q Consensus 1425 ~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l-~~~weK~~~~la~ 1495 (2096)
.. -.|.+ ..+........+++++.+++.....+. .+.+.+.|.+|.+. .+.-.+.|..+|.
T Consensus 416 ~~--~~p~~------~~~~~~~~~~~~~vWi~y~~~erR~~~--l~~AR~vf~~A~~~~~~~~~~lyi~~A~ 477 (679)
T 4e6h_A 416 ME--DDPTN------ESAINQLKSKLTYVYCVYMNTMKRIQG--LAASRKIFGKCRRLKKLVTPDIYLENAY 477 (679)
T ss_dssp HH--HSTTC------HHHHHHHHHHHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHTGGGSCTHHHHHHHH
T ss_pred hh--ccCcc------hhhhhhhccchHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 00 00000 001111122456788888888776654 68888999999887 3222244544443
No 185
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=90.47 E-value=74 Score=44.50 Aligned_cols=138 Identities=13% Similarity=0.044 Sum_probs=81.8
Q ss_pred HHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhh--cccHHHHHHHHHHHhHhhhhhhhhhhccCccccc---chhhHHH
Q 000134 167 SCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLL--NKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASS---RSNELKL 241 (2096)
Q Consensus 167 ~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~--~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 241 (2096)
.++.+++..|...+.--..++...+.+-+..-+. ..+-..++|.|=.++++- | .... ++.--.+
T Consensus 454 ~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIa----------g-~~~~~~E~~~Lp~v 522 (1073)
T 3gjx_A 454 NLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSIS----------G-AMHEEDEKRFLVTV 522 (1073)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTT----------T-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHH----------C-cCCcccccchHHHH
Confidence 4566666665442210001223334443333322 234778889888888832 1 1111 1111223
Q ss_pred HHHHHHHhhhcC--C--hhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhccc
Q 000134 242 LDVIKLAFTAAD--D--PLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKG 315 (2096)
Q Consensus 242 ~~~~~~~~~~~~--d--~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~ 315 (2096)
+..+-......+ | +-+.=+.+.++|+-.+=...+.+.+.-++-.|++.+..+|+-|...|..-+.++|..+.+.
T Consensus 523 i~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~ 600 (1073)
T 3gjx_A 523 IKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRH 600 (1073)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333332 2 2355556668888655555688999999999999999999999999988888888888764
No 186
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=90.43 E-value=4.4 Score=45.56 Aligned_cols=82 Identities=9% Similarity=0.018 Sum_probs=41.3
Q ss_pred hhcCHHHHHHHHHHHHcc--------CCCchhhhhhHHHHHHhccChHHHHHHhhhhhcc--------ChhhhhhHhHHH
Q 000134 1126 KSGNWAEVFTSCEQALQM--------EPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISR--------IPQYKKTWCMQG 1189 (2096)
Q Consensus 1126 ~~G~W~~A~~~YE~~Lq~--------~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~--------~p~~~~~~~~~~ 1189 (2096)
..|+|++|..+|+++++. .|........+-.|+...|+++....+.+..... .|.... .....
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~l 91 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAA-TLNNL 91 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH-HHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHH-HHHHH
Confidence 456666666666666542 1333444455566666777776655554433221 121111 11222
Q ss_pred HHHHHhcCChhhHHHhhcc
Q 000134 1190 VQAAWRLGRWDLMDEYLSG 1208 (2096)
Q Consensus 1190 vEAAWrlg~Wd~l~~~l~~ 1208 (2096)
..+.+..|+|+.-.+++..
T Consensus 92 ~~~~~~~g~~~~A~~~~~~ 110 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKR 110 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHH
Confidence 3456667777666555443
No 187
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=90.28 E-value=0.67 Score=44.85 Aligned_cols=62 Identities=13% Similarity=0.095 Sum_probs=52.2
Q ss_pred HHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhh
Q 000134 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQY 1181 (2096)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~ 1181 (2096)
....+...|+|++|..+|+++++..|++.....++=.|+..+|+|+..+...+..+...|+.
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 10 QGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 34557789999999999999999999999888888999999999998888777666555543
No 188
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=90.25 E-value=2.7 Score=40.71 Aligned_cols=25 Identities=16% Similarity=0.441 Sum_probs=20.6
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVRE 1069 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~ 1069 (2096)
.++....+.+.|..|+-+++..+..
T Consensus 14 ~~~~~~~~~~~~~~A~~~~~~~~~~ 38 (125)
T 1na0_A 14 NLGNAYYKQGDYDEAIEYYQKALEL 38 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5677888899999999999987654
No 189
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=90.00 E-value=3 Score=46.92 Aligned_cols=124 Identities=19% Similarity=0.102 Sum_probs=93.3
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc------CC----ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccc
Q 000134 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQAS------GA----PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEV 1415 (2096)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~all~a~~~------~~----~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~ 1415 (2096)
...+..|...|.+....|+++.|...+.+|... +. +.+....|.+++..|+..+|+..+++++.....
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-- 117 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK-- 117 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH--
Confidence 356778999999999999999999998887655 22 235677899999999999999999998762100
Q ss_pred ccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--------ccchH
Q 000134 1416 VGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVREL--------QPMWE 1487 (2096)
Q Consensus 1416 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l--------~~~we 1487 (2096)
......+..+.++..+|......|+ .++....|.++++. .+...
T Consensus 118 --------------------------~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 118 --------------------------VLGKFHPDVAKQLNNLALLCQNQGK--AEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp --------------------------HHCTTCHHHHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred --------------------------HcCCCChHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 0001123456777888877665554 78899999999998 77777
Q ss_pred HHHHHHHhhhHH
Q 000134 1488 KGYFYMAKYCDD 1499 (2096)
Q Consensus 1488 K~~~~la~y~d~ 1499 (2096)
.+++.+|..|.+
T Consensus 170 ~~~~~la~~~~~ 181 (283)
T 3edt_B 170 KTKNNLASCYLK 181 (283)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 788888887743
No 190
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=89.93 E-value=1.8 Score=55.86 Aligned_cols=123 Identities=14% Similarity=0.051 Sum_probs=90.4
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH--hccCC----hh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----LQ 1118 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~--~~~~s----l~ 1118 (2096)
.++....+-+.|..|+-+++..+... |. ....+..|..+|..+++.|........ ...++ ..
T Consensus 28 ~lg~~~~~~g~~~~A~~~~~~al~~~-----p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 95 (568)
T 2vsy_A 28 MLADAELGMGDTTAGEMAVQRGLALH-----PG-------HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIAL 95 (568)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTTS-----TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-----CC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 57788888899999999999987642 11 124567888899999998887776542 11222 22
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhc---cChHHHHHHhhhhhccCh
Q 000134 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNM---CHLQAMVTHVDGLISRIP 1179 (2096)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~L---Gq~~~ll~~~~gl~~~~p 1179 (2096)
.....|...|++++|..+|+++++..|++......+-.|+..+ |+++....+.+..+...|
T Consensus 96 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 96 WLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 3445678899999999999999999998888888888888888 888877666655444333
No 191
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=89.89 E-value=0.54 Score=49.75 Aligned_cols=88 Identities=15% Similarity=0.164 Sum_probs=62.9
Q ss_pred hHHHHHhHhhcCHHHHHHHHHHHHcc------------------CCCchhhhhhHHHHHHhccChHHHHHHhhhhhccCh
Q 000134 1118 QDELLSNKKSGNWAEVFTSCEQALQM------------------EPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIP 1179 (2096)
Q Consensus 1118 ~~qil~~E~~G~W~~A~~~YE~~Lq~------------------~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p 1179 (2096)
.+....+-+.|+|++|..+|+.+++. .|.+...+.++-.|+..+|+|+..+.+.+..+...|
T Consensus 15 ~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p 94 (162)
T 3rkv_A 15 RQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREE 94 (162)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Confidence 34556677889999999999999887 555556677788899999999988888776666666
Q ss_pred hhhhhHhHHHHHHHHhcCChhhHHHhh
Q 000134 1180 QYKKTWCMQGVQAAWRLGRWDLMDEYL 1206 (2096)
Q Consensus 1180 ~~~~~~~~~~vEAAWrlg~Wd~l~~~l 1206 (2096)
.....+.. ...+--.+|+|+.-.+++
T Consensus 95 ~~~~a~~~-~g~~~~~~g~~~~A~~~~ 120 (162)
T 3rkv_A 95 TNEKALFR-RAKARIAAWKLDEAEEDL 120 (162)
T ss_dssp TCHHHHHH-HHHHHHHTTCHHHHHHHH
T ss_pred cchHHHHH-HHHHHHHHhcHHHHHHHH
Confidence 55444333 334566788887655543
No 192
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.83 E-value=8.3 Score=45.06 Aligned_cols=140 Identities=18% Similarity=0.100 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CCC----hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccc
Q 000134 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQAS----GAP----NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGST 1419 (2096)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~all~a~~~----~~~----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~ 1419 (2096)
...++-+.+.+.+..|.++.|..+..+|..+ +++ .+...-+.++...|+..+|+..+++++.-.+.
T Consensus 36 A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~------ 109 (292)
T 1qqe_A 36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTH------ 109 (292)
T ss_dssp HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH------
Confidence 3445666678889999999999998887654 333 35678889999999999999999998762100
Q ss_pred ccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhccch------HHHHHH
Q 000134 1420 AISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYT-GQKQKEDVITLYSRVRELQPMW------EKGYFY 1492 (2096)
Q Consensus 1420 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~-~~~~~~~i~~~Y~~a~~l~~~w------eK~~~~ 1492 (2096)
.......+.++..+|.-.... |+ .++.+..|++|+++.|.- ..+|..
T Consensus 110 ------------------------~g~~~~~a~~~~~lg~~~~~~lg~--~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~ 163 (292)
T 1qqe_A 110 ------------------------RGQFRRGANFKFELGEILENDLHD--YAKAIDCYELAGEWYAQDQSVALSNKCFIK 163 (292)
T ss_dssp ------------------------TTCHHHHHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------------------------cCCHHHHHHHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 001123466777788776664 64 889999999999998753 245666
Q ss_pred HHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCc
Q 000134 1493 MAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHK 1541 (2096)
Q Consensus 1493 la~y~d~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~ 1541 (2096)
+|..|-+. |. ...|+..|-+++...++
T Consensus 164 lg~~~~~~--------------g~--------~~~A~~~~~~al~~~~~ 190 (292)
T 1qqe_A 164 CADLKALD--------------GQ--------YIEASDIYSKLIKSSMG 190 (292)
T ss_dssp HHHHHHHT--------------TC--------HHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHh--------------CC--------HHHHHHHHHHHHHHHhc
Confidence 66655321 11 23688888888876544
No 193
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=89.79 E-value=2.1 Score=45.90 Aligned_cols=146 Identities=8% Similarity=-0.042 Sum_probs=100.1
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHh--ccCChhHH-H
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLH--KSLSLQDE-L 1121 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~--~~~sl~~q-i 1121 (2096)
.++....+-|.|..|+-+++.-+...++ ....+-.|..+|...+++|........- ..++..-. .
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~------------~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 78 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQS------------RGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSL 78 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHHT------------SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC------------cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHH
Confidence 4677788899999999999987654332 1245678999999999999888876531 11211110 0
Q ss_pred ---HHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhh-hHhHHHHHHHHhcC
Q 000134 1122 ---LSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKK-TWCMQGVQAAWRLG 1197 (2096)
Q Consensus 1122 ---l~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~-~~~~~~vEAAWrlg 1197 (2096)
+.....+...+|..+|+++++..|++...+..+-.|+...|+++....+.+..+...|++.. .....-.++...+|
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g 158 (176)
T 2r5s_A 79 IAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALG 158 (176)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhC
Confidence 11112223345899999999999999999999999999999999998888877777775422 11112234555677
Q ss_pred ChhhH
Q 000134 1198 RWDLM 1202 (2096)
Q Consensus 1198 ~Wd~l 1202 (2096)
+++.-
T Consensus 159 ~~~~A 163 (176)
T 2r5s_A 159 QGNAI 163 (176)
T ss_dssp SSCHH
T ss_pred CCCcH
Confidence 77643
No 194
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=89.67 E-value=3.3 Score=44.04 Aligned_cols=103 Identities=13% Similarity=0.137 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHH-HHHcCCc--hHHHHHHHHHhhcCCcccccccccc
Q 000134 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKL-LWSTRRS--DGAIAELQQNLLNKPVEVVGSTAIS 1422 (2096)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKL-LW~~g~~--~~Ai~~L~~~i~~~~~~~~~~~~~~ 1422 (2096)
....|...|.+....|.++.|..++.++.... .+.+....|.+ +...|+. .+|+..+++++...|.
T Consensus 43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~--------- 113 (177)
T 2e2e_A 43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSN--------- 113 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTT---------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCC---------
Confidence 35789999999999999999999999987764 45677888998 6788988 9999999998763210
Q ss_pred cccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHH
Q 000134 1423 SITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEK 1488 (2096)
Q Consensus 1423 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK 1488 (2096)
...++..+|......|+ .++.+..|.++++..|....
T Consensus 114 ---------------------------~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 114 ---------------------------EITALMLLASDAFMQAN--YAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp ---------------------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTCCTTSC
T ss_pred ---------------------------cHHHHHHHHHHHHHccc--HHHHHHHHHHHHhhCCCCcc
Confidence 02355666666665554 78888999999999987543
No 195
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=89.46 E-value=55 Score=42.99 Aligned_cols=161 Identities=14% Similarity=0.130 Sum_probs=101.5
Q ss_pred HHHHHHHhhc-ccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhh-----
Q 000134 148 LLNIYFEFLY-DESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDT----- 221 (2096)
Q Consensus 148 ~~~~~~~~l~-~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~----- 221 (2096)
+-+-+.++|. ..++.-|+-..+-++.++.++...-+ .. ..|.+.+..+|.|++..|+.++...+..+.++.
T Consensus 147 l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~--~~-~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~ 223 (621)
T 2vgl_A 147 FAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV--PM-GDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFK 223 (621)
T ss_dssp HTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC--CC-CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc--Cc-hhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHH
Confidence 3344555553 46777899889999999999765322 21 469999999999999999999998887775322
Q ss_pred -----h---hhhhccCcccc----------cchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhh------------
Q 000134 222 -----V---LSSLFLDENAS----------SRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMA------------ 271 (2096)
Q Consensus 222 -----~---~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~------------ 271 (2096)
+ |..+..+++-+ +-+- +..+.++-..+...+||...+.+...+.+|+..
T Consensus 224 ~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~-qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~ 302 (621)
T 2vgl_A 224 TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWL-SVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQH 302 (621)
T ss_dssp THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHH-HHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccc
Confidence 1 11111111110 1111 222233333354455666666555544444321
Q ss_pred -----------------hcccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhh
Q 000134 272 -----------------VDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFH 312 (2096)
Q Consensus 272 -----------------~~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~ 312 (2096)
.+...++...+.-.|..+|.++++-+|-+|.+-|..++..+
T Consensus 303 ~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~ 360 (621)
T 2vgl_A 303 SNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSE 360 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCT
T ss_pred cchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcc
Confidence 12245666677777888898899999999999999998765
No 196
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=89.22 E-value=2.3 Score=51.25 Aligned_cols=123 Identities=11% Similarity=0.037 Sum_probs=80.6
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccC---CCCChhhHHHHHHHHhcCCChHHHHHHHHH--hccCC---
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKS---GTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS--- 1116 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~---~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~--~~~~s--- 1116 (2096)
.++...++-+.|..|+.+++..+.............. .......+..|..+|..+++++...-.... ...++
T Consensus 152 ~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~ 231 (336)
T 1p5q_A 152 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEK 231 (336)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 5788889999999999999998875432100000000 000013456777888888888876666432 11221
Q ss_pred -hhHHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHH
Q 000134 1117 -LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAM 1167 (2096)
Q Consensus 1117 -l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~l 1167 (2096)
.......|...|++++|..+|+++++..|++......+-.|+..+|+++..
T Consensus 232 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 232 GLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 223455677888888888888888888888877777777788888877654
No 197
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=89.13 E-value=0.99 Score=43.16 Aligned_cols=63 Identities=16% Similarity=0.153 Sum_probs=52.6
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHHccCCCchh-hhhhHHHHHHhccChHHHHHHhhhhhccChhh
Q 000134 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQ-RHSDVLNCLLNMCHLQAMVTHVDGLISRIPQY 1181 (2096)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~-~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~ 1181 (2096)
.+...+...|+|++|..+|+.+++..|++.. ....+=.|+..+|+++....+.+..+...|+.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 3556678899999999999999999999988 88888889999999998888777665555543
No 198
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=88.99 E-value=1.4 Score=46.88 Aligned_cols=124 Identities=7% Similarity=-0.017 Sum_probs=85.6
Q ss_pred HcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcc
Q 000134 1361 LAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVL 1438 (2096)
Q Consensus 1361 Kag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1438 (2096)
+.|.++.|...+.++.... .+.+....|.++...|+..+|+..++++++..| .
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-------------------~------ 76 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-------------------E------ 76 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-------------------S------
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------------------C------
Confidence 3566677777777766554 456788999999999999999999999876211 0
Q ss_pred cccccchhchhHHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcc
Q 000134 1439 SNTQTLNEKRDIAKTLLLYSRW-IHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPS 1517 (2096)
Q Consensus 1439 ~~~q~~~~~~~~Aka~LllakW-l~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~~~~~~e~~~~~g~~ 1517 (2096)
.+.++..+|.. ....|+...++.++.|.++++.+|....+|+.+|..|... |
T Consensus 77 -----------~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------------g-- 129 (177)
T 2e2e_A 77 -----------NAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQ--------------A-- 129 (177)
T ss_dssp -----------CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------T--
T ss_pred -----------CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--------------c--
Confidence 03355666666 4455553348889999999999999999999999876432 1
Q ss_pred hhhhhchHHHHHHHHHHhhccCCcc
Q 000134 1518 EKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2096)
Q Consensus 1518 ~~~~~~~l~~ai~~Y~~sl~~g~~~ 1542 (2096)
-...|+..|-+++...+..
T Consensus 130 ------~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 130 ------NYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp ------CHHHHHHHHHHHHHTCCTT
T ss_pred ------cHHHHHHHHHHHHhhCCCC
Confidence 1235788888888766553
No 199
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=88.79 E-value=14 Score=44.57 Aligned_cols=113 Identities=8% Similarity=0.024 Sum_probs=84.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhc----CCC----hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000134 1355 YAKLCRLAGHYETATRAILEAQAS----GAP----NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2096)
Q Consensus 1355 ~AklARKag~~~~A~~all~a~~~----~~~----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~ 1426 (2096)
.+......|.++.|.....+|... +++ .+....|.+++..|+..+|+..++++++-.+.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~------------- 175 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKE------------- 175 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-------------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-------------
Confidence 899999999999999999998765 332 45677889999999999999999998762110
Q ss_pred cCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchH------HHHHHHHhhhH
Q 000134 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWE------KGYFYMAKYCD 1498 (2096)
Q Consensus 1427 ~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~we------K~~~~la~y~d 1498 (2096)
........+.++..+|.-....|+ .++.+..|.+|+++.++.. .+++.+|..|.
T Consensus 176 ----------------~~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 235 (383)
T 3ulq_A 176 ----------------HEAYNIRLLQCHSLFATNFLDLKQ--YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN 235 (383)
T ss_dssp ----------------CSTTHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ----------------CccchHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 000123457788888887776665 8889999999998866443 46667776653
No 200
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=88.32 E-value=64 Score=40.81 Aligned_cols=169 Identities=11% Similarity=0.114 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHH-------hCCCC-----HHHHHHHHHHHHH-hccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcc
Q 000134 1451 AKTLLLYSRWIHY-------TGQKQ-----KEDVITLYSRVRE-LQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPS 1517 (2096)
Q Consensus 1451 Aka~LllakWl~~-------~~~~~-----~~~i~~~Y~~a~~-l~~~weK~~~~la~y~d~l~~~~~~~~e~~~~~g~~ 1517 (2096)
+.+++.+|.|+.. .|... .+++++.|.+|++ ..|+....|+.+|.++.+. |
T Consensus 272 ~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~--------------g-- 335 (530)
T 2ooe_A 272 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR--------------M-- 335 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT--------------T--
T ss_pred HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc--------------C--
Confidence 5678899999876 35433 3488999999997 8999999999999887532 1
Q ss_pred hhhhhchHHHHHHHHHHhhccCCcchhhhHHHHHHhhhhcCccccccCCCChhhhHhHHHHHHHHHHhhcCCCCCchhhh
Q 000134 1518 EKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLT 1597 (2096)
Q Consensus 1518 ~~~~~~~l~~ai~~Y~~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~iP~~~wl~ 1597 (2096)
-...|...|-+++...+.... .+|..++....+ .+...+..+++++.+..-|.. +-.
T Consensus 336 ------~~~~A~~~~~~al~~~p~~~~-------~~~~~~~~~~~~---------~~~~~~A~~~~~~Al~~~~~~-~~~ 392 (530)
T 2ooe_A 336 ------KYEKVHSIYNRLLAIEDIDPT-------LVYIQYMKFARR---------AEGIKSGRMIFKKAREDARTR-HHV 392 (530)
T ss_dssp ------CHHHHHHHHHHHHHSSSSCHH-------HHHHHHHHHHHH---------HHHHHHHHHHHHHHHTCTTCC-THH
T ss_pred ------CHHHHHHHHHHHhCccccCch-------HHHHHHHHHHHH---------hcCHHHHHHHHHHHHhccCCc-hHH
Confidence 123578888888887665321 156665542110 111223345666666654432 111
Q ss_pred hh--HHhhhccccCchHHHHHHHHHHHHHHHhchhh-HHHHHHHhhcCCChhHHHHHHHHHHHHHhcCC
Q 000134 1598 VL--PQLVSRICHQNEEIVRLVKHIITSVLRQYPQQ-GLWIMAAVSKSTIPSRREAAAEIIQAAKKGSA 1663 (2096)
Q Consensus 1598 ~l--PQLisRl~h~~~~v~~~l~~il~kv~~~yPqq-~lw~l~~~~~S~~~~R~~~~~~Il~~~~~~~~ 1663 (2096)
++ -++--. ...+ .+-...+..+..+.+|.. .+|.-.+-.... ..+.+.|..+++++....+
T Consensus 393 ~~~~a~~~~~-~~~~---~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~-~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 393 YVTAALMEYY-CSKD---KSVAFKIFELGLKKYGDIPEYVLAYIDYLSH-LNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp HHHHHHHHHH-HTCC---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-TTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHH-HcCC---hhHHHHHHHHHHHHCCCCHHHHHHHHHHHHh-CCCHhhHHHHHHHHHhccC
Confidence 11 111111 1222 244566677777778864 566555543222 3456677888888766543
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=88.32 E-value=1.1 Score=41.54 Aligned_cols=60 Identities=13% Similarity=0.216 Sum_probs=47.4
Q ss_pred HHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChh
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ 1180 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~ 1180 (2096)
...+...|+|++|..+|+++++..|++......+-.|+..+|+++....+.+......|+
T Consensus 16 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 75 (91)
T 1na3_A 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75 (91)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 344667899999999999999999988888888888899999998887776655444443
No 202
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=88.28 E-value=5.4 Score=45.71 Aligned_cols=123 Identities=20% Similarity=0.114 Sum_probs=91.8
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc------CC----ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccc
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQAS------GA----PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVV 1416 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~------~~----~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~ 1416 (2096)
.....|...+.+....|+++.|...+.+|... ++ ..+....|.+++..|+..+|+..++++++.....
T Consensus 67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-- 144 (311)
T 3nf1_A 67 DVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV-- 144 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh--
Confidence 45678899999999999999999988887654 22 2366778999999999999999999987521000
Q ss_pred cccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--------ccchHH
Q 000134 1417 GSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVREL--------QPMWEK 1488 (2096)
Q Consensus 1417 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l--------~~~weK 1488 (2096)
.....+..+.++..+|......|+ .++.+..|.++++. .+....
T Consensus 145 --------------------------~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 196 (311)
T 3nf1_A 145 --------------------------LGKDHPDVAKQLNNLALLCQNQGK--YEEVEYYYQRALEIYQTKLGPDDPNVAK 196 (311)
T ss_dssp --------------------------HCTTCHHHHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHHHHTSCTTCHHHHH
T ss_pred --------------------------cCCCChHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 001123456777888887766654 78899999999988 666677
Q ss_pred HHHHHHhhhHH
Q 000134 1489 GYFYMAKYCDD 1499 (2096)
Q Consensus 1489 ~~~~la~y~d~ 1499 (2096)
+++.+|..|..
T Consensus 197 ~~~~la~~~~~ 207 (311)
T 3nf1_A 197 TKNNLASCYLK 207 (311)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888887643
No 203
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=87.95 E-value=1.3 Score=51.97 Aligned_cols=85 Identities=12% Similarity=0.035 Sum_probs=66.3
Q ss_pred HHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCCh
Q 000134 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRW 1199 (2096)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~W 1199 (2096)
....+...|+|++|..+|+.+++..|++.....++-.|+..+|+|+......+......|+...-+.. ...+...+|+|
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-lg~~~~~~g~~ 88 (281)
T 2c2l_A 10 QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF-LGQCQLEMESY 88 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHH-HHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCH
Confidence 45567789999999999999999999999888888999999999999888887766666655443333 34456678888
Q ss_pred hhHHHh
Q 000134 1200 DLMDEY 1205 (2096)
Q Consensus 1200 d~l~~~ 1205 (2096)
+.-.++
T Consensus 89 ~~A~~~ 94 (281)
T 2c2l_A 89 DEAIAN 94 (281)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765443
No 204
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=87.76 E-value=2.9 Score=45.55 Aligned_cols=112 Identities=7% Similarity=0.097 Sum_probs=74.4
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhccCChhHHHHHh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSN 1124 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~~sl~~qil~~ 1124 (2096)
.++...++-+.|..|+-+++..+...... +. ....... +.+ ..+. ..........|
T Consensus 43 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~--~~------~~~~~~~----------~~~--~~~~----~~~~~~la~~~ 98 (198)
T 2fbn_A 43 EEGNEFFKKNEINEAIVKYKEALDFFIHT--EE------WDDQILL----------DKK--KNIE----ISCNLNLATCY 98 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTC--TT------CCCHHHH----------HHH--HHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcc--cc------cchhhHH----------HHH--HHHH----HHHHHHHHHHH
Confidence 57888999999999999999987643221 10 0000000 000 0000 00011234457
Q ss_pred HhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChh
Q 000134 1125 KKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ 1180 (2096)
Q Consensus 1125 E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~ 1180 (2096)
.+.|+|++|..+|+++++..|++......+-.|+..+|+++....+.+......|+
T Consensus 99 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 154 (198)
T 2fbn_A 99 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 154 (198)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 78899999999999999999999888888888999999999887777665544443
No 205
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=87.66 E-value=52 Score=39.07 Aligned_cols=60 Identities=22% Similarity=0.272 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhc----CCC----hHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1350 NCWLQYAKLCRLAGHYETATRAILEAQAS----GAP----NVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~all~a~~~----~~~----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
..|...+++....|+++.|...+.++... +.+ .+....|.+++..|+..+|...+++++.
T Consensus 254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 36788899999999999999888776433 221 3666779999999999999999999875
No 206
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=87.55 E-value=64 Score=43.68 Aligned_cols=260 Identities=10% Similarity=0.012 Sum_probs=131.2
Q ss_pred hcCChhHHHHHHHHHHHHHhhhcccchhHHH-HHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccchhhhhhh
Q 000134 251 AADDPLILETLLESTAELMMAVDVHSQHFLF-LLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICN 329 (2096)
Q Consensus 251 ~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~-~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~~ 329 (2096)
...++.++|-...+++.|.+-..-...+.-. ++-.||..|.+.++.++-.|..-|.++|....... .+... .+ .
T Consensus 505 ~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~--~~~~~--~~-~ 579 (810)
T 3now_A 505 KTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEV--SFSGQ--RS-L 579 (810)
T ss_dssp TCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHH--HTTTH--HH-H
T ss_pred cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhh--hhcch--hh-h
Confidence 3477899999999999994322222222222 23448888888889999999999999987654311 11000 01 1
Q ss_pred hhhHHHHHHhcCchHHH------HHHHHHHhCCChHHHHHhhcccccchhhhc--cccChhHHHHHHHHHHHcCCC-chh
Q 000134 330 ELFDYLSVRLASRPIMV------REFAEAAFGVETEELVKKMIPAVLPKLVVS--QQDNDQAVNIINELAKCLNTD-MVP 400 (2096)
Q Consensus 330 ~l~~~~~~~l~~rp~~~------~~~~e~llg~~~~~fL~~~~~~~LP~LVl~--~~~~~~~~~~i~~ia~~~~~~-~~~ 400 (2096)
..-++++.-|.+.+... ..++. |...+.+.=-.......+|.|+-- .............|++....+ ...
T Consensus 580 ~aIppLv~LL~~~~~~l~~~eAl~AL~N-La~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~ 658 (810)
T 3now_A 580 DVIRPLLNLLQQDCTALENFESLMALTN-LASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIK 658 (810)
T ss_dssp HTHHHHHHTTSTTSCHHHHHHHHHHHHH-HTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHH
T ss_pred cHHHHHHHHhCCCCcHHHHHHHHHHHHH-HhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHH
Confidence 13456666554332222 22332 444432111112334567888742 222222234455555533322 222
Q ss_pred HHhh--hHHHHHHHHhccccH---HHHHHHHHHHhhhcCCChHHHHH-H-hhHHHHHHHHHhhcCCCchhHhhhhcchhH
Q 000134 401 LIVT--WIPKVLAFALHQADE---RRLLSALEFYCIQTGSDNQEIFA-A-ALPALLDELICFVDGGDSDEINERLNRVPR 473 (2096)
Q Consensus 401 l~~~--~~~~Ila~ll~~~~~---~~~~~~l~~~~~~~~~~~~~~~~-~-~~~~~l~eLl~~~~~~~~~~~~~~~~~~~~ 473 (2096)
.+.+ ..-.+|..|+..++. .....+|..+........+.++. + .+|.++ +|+ ..++.+ ..+ .
T Consensus 659 ~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv-~LL---~s~d~~-vq~------~ 727 (810)
T 3now_A 659 MFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILH-TLI---ANPSPA-VQH------R 727 (810)
T ss_dssp HHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHH-HHH---TCSSHH-HHH------H
T ss_pred HHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHH-HHH---CCCCHH-HHH------H
Confidence 2322 334455555554443 34556666666542223345554 2 334333 443 344332 221 2
Q ss_pred HHHHHhhhccCCCChhhhhHHHHHHHHHHhhhhhcCC--CChHHHHHHHHHHHHHHHH
Q 000134 474 VIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHA--EDLSLQKQALKRIEILIEM 529 (2096)
Q Consensus 474 ~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~--~~~~~k~~~l~sl~~li~l 529 (2096)
+...+.++..++.....++.+. |.+..+-.-+..+ ++.+....++.+|..++++
T Consensus 728 A~~aL~NL~~~s~e~~~~l~e~--G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 728 GIVIILNMINAGEEIAKKLFET--DIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTS--THHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHC--CCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhC
Confidence 2333344444544455555554 6666665433223 3556667788888887765
No 207
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=87.36 E-value=5.9 Score=40.08 Aligned_cols=119 Identities=11% Similarity=0.037 Sum_probs=85.3
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CCC----hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccc
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQAS----GAP----NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGS 1418 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~----~~~----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~ 1418 (2096)
..+..|...+.+....|.++.|...+.+|... +++ .+....|.+++..|+..+|+..+++++.-.+.
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~----- 81 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ----- 81 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----
Confidence 45778899999999999999999988887654 222 36677899999999999999999998752100
Q ss_pred cccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccch------HHHHHH
Q 000134 1419 TAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMW------EKGYFY 1492 (2096)
Q Consensus 1419 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~w------eK~~~~ 1492 (2096)
.......+.++..+|......|+ .++....|++++++.+.. ..+++.
T Consensus 82 -------------------------~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 134 (164)
T 3ro3_A 82 -------------------------LKDRAVEAQSCYSLGNTYTLLQD--YEKAIDYHLKHLAIAQELKDRIGEGRACWS 134 (164)
T ss_dssp -------------------------TTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -------------------------hCCcHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHccchHhHHHHHHH
Confidence 00122446677778877766665 788888999888775432 234555
Q ss_pred HHhhh
Q 000134 1493 MAKYC 1497 (2096)
Q Consensus 1493 la~y~ 1497 (2096)
+|..|
T Consensus 135 la~~~ 139 (164)
T 3ro3_A 135 LGNAY 139 (164)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 208
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=87.13 E-value=6.5 Score=43.72 Aligned_cols=137 Identities=11% Similarity=-0.007 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCChHHHHHHHHHHHcC----CchHHHHHHHHHhhcCCcccccccccccc
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWSTR----RSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~~~~~~iE~AKLLW~~g----~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~ 1424 (2096)
...+...+.+....|.++.|...+.+|...+.+.+...-+.++.. | +..+|+..++++++. |
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~------g------- 83 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA------G------- 83 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT------T-------
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC------C-------
Confidence 566788888888899999999999999999999999999998887 6 789999999987541 0
Q ss_pred cccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHhcc--chHHHHHHHHhhhHHH
Q 000134 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHY-TG-QKQKEDVITLYSRVRELQP--MWEKGYFYMAKYCDDV 1500 (2096)
Q Consensus 1425 ~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~-~~-~~~~~~i~~~Y~~a~~l~~--~weK~~~~la~y~d~l 1500 (2096)
.+.++..+|..... .+ ..+.+..++.|++|.+..+ ....+++.||..|..-
T Consensus 84 -------------------------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g 138 (212)
T 3rjv_A 84 -------------------------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASG 138 (212)
T ss_dssp -------------------------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHT
T ss_pred -------------------------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcC
Confidence 03456666665532 12 4568889999999999887 4578999999987431
Q ss_pred HHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhcc-CCcc
Q 000134 1501 LVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHR-GHKN 1542 (2096)
Q Consensus 1501 ~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~-g~~~ 1542 (2096)
. |. . .-...++..|-+++.. |+..
T Consensus 139 ~-------------g~-~----~d~~~A~~~~~~A~~~~~~~~ 163 (212)
T 3rjv_A 139 V-------------HG-P----EDDVKASEYFKGSSSLSRTGY 163 (212)
T ss_dssp S-------------SS-S----CCHHHHHHHHHHHHHTSCTTH
T ss_pred C-------------CC-C----CCHHHHHHHHHHHHHcCCCHH
Confidence 0 00 0 1134688888888887 5544
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=87.02 E-value=1.3 Score=43.06 Aligned_cols=52 Identities=10% Similarity=0.064 Sum_probs=45.1
Q ss_pred HHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhh
Q 000134 1122 LSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDG 1173 (2096)
Q Consensus 1122 l~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~g 1173 (2096)
..+...|+|++|..+|+++++..|++......+=.|+..+|+++......+.
T Consensus 15 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 66 (100)
T 3ma5_A 15 QEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQ 66 (100)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3466889999999999999999999998888888999999999987665553
No 210
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=86.90 E-value=73 Score=39.97 Aligned_cols=107 Identities=11% Similarity=0.082 Sum_probs=68.5
Q ss_pred HHhhcccHHHHHHHHHHHhHhhhhhh-hhhhccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhccc
Q 000134 197 FLLLNKRKAIRDAFCTQIGYFLQDTV-LSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVH 275 (2096)
Q Consensus 197 ~~~~~~~r~vR~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~ 275 (2096)
.+|.+++..+|..+...+..+-.+.- -..++ .....+..+-+.+...+|+.+++....+++.+.......
T Consensus 24 ~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~---------~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~ 94 (529)
T 1jdh_A 24 KLLNDEDQVVVNKAAVMVHQLSKKEASRHAIM---------RSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 94 (529)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHH---------TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHcCCccHHHHH---------hCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhH
Confidence 34577888888888888877541110 00000 012345556666666678889999999888874322211
Q ss_pred chhHHH-HHHHHHHhhCCCCcchHHHHHHHHHHHhhhh
Q 000134 276 SQHFLF-LLILLVEQLDNPHVTVRMNASRLIRKSCFFH 312 (2096)
Q Consensus 276 ~e~~~~-~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~ 312 (2096)
..+... ++-.|++.|.++++-++..|..-|.++|...
T Consensus 95 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 132 (529)
T 1jdh_A 95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ 132 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 111111 3445899999999999999999999998764
No 211
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=86.79 E-value=1.1 Score=54.31 Aligned_cols=114 Identities=15% Similarity=0.045 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCh-------------------HHHHHHHHHHHcCCchHHHHHHHHH
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASGAPN-------------------VHMEKAKLLWSTRRSDGAIAELQQN 1407 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~~~~~-------------------~~iE~AKLLW~~g~~~~Ai~~L~~~ 1407 (2096)
..+..|...+..+.+.|.++.|.....+|..+.+.. +....|..+...|+..+|+..++++
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 356678899999999999999999999887765432 5677888899999999999999988
Q ss_pred hhcCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchH
Q 000134 1408 LLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWE 1487 (2096)
Q Consensus 1408 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~we 1487 (2096)
+...| ..++++..+|..+...|+ .++.+..|++|+++.|...
T Consensus 257 l~~~p------------------------------------~~~~a~~~lg~a~~~~g~--~~~A~~~l~~al~l~p~~~ 298 (338)
T 2if4_A 257 LTEEE------------------------------------KNPKALFRRGKAKAELGQ--MDSARDDFRKAQKYAPDDK 298 (338)
T ss_dssp HHHCT------------------------------------TCHHHHHHHHHHHHTTTC--HHHHHHHHHHTTC------
T ss_pred HHhCC------------------------------------CCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHCCCCH
Confidence 75211 114567777776655554 7888999999999999888
Q ss_pred HHHHHHHhhhH
Q 000134 1488 KGYFYMAKYCD 1498 (2096)
Q Consensus 1488 K~~~~la~y~d 1498 (2096)
.++..++....
T Consensus 299 ~a~~~L~~l~~ 309 (338)
T 2if4_A 299 AIRRELRALAE 309 (338)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 88877776543
No 212
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=86.51 E-value=1.2e+02 Score=42.16 Aligned_cols=105 Identities=10% Similarity=0.031 Sum_probs=72.5
Q ss_pred ccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHHHHHHHHHhhh--cCC--hhHHHHHHHHHHHHHhhhcccch
Q 000134 202 KRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTA--ADD--PLILETLLESTAELMMAVDVHSQ 277 (2096)
Q Consensus 202 ~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d--~~i~eTll~~~~~i~~~~~~~~e 277 (2096)
.+=..|+|++-.++++.+... ....+..--.++..+-..... .+| +.++.|.+-++|+...=...+.+
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~--------~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~ 536 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMS--------EDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN 536 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSC--------HHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHH
T ss_pred CCHHHHHHHHHHHHHHHcCCC--------chhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHH
Confidence 577889999999999662111 000111112233333332322 122 45789999999998776667889
Q ss_pred hHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcc
Q 000134 278 HFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLK 314 (2096)
Q Consensus 278 ~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~ 314 (2096)
.+.-++-.|++.|..+|+-|...|..-|.++|..+..
T Consensus 537 ~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~ 573 (1023)
T 4hat_C 537 FLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY 573 (1023)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899999888999999999999999988765
No 213
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=86.39 E-value=6 Score=46.64 Aligned_cols=155 Identities=6% Similarity=-0.031 Sum_probs=87.4
Q ss_pred HHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHH----Hh-ccCC-----
Q 000134 1047 ARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLAR----LH-KSLS----- 1116 (2096)
Q Consensus 1047 A~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~----~~-~~~s----- 1116 (2096)
+..-...+.|..|+-+++.-+.-.....++. ..-..+..+..+|..+++++....... +. ..-+
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 116 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLF------HAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAA 116 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4455667889999998887654322111110 001245566667777776665544432 11 0001
Q ss_pred --hhHHHHHhHhhcCHHHHHHHHHHHHccCCCc------hhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhh----h
Q 000134 1117 --LQDELLSNKKSGNWAEVFTSCEQALQMEPTS------VQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKK----T 1184 (2096)
Q Consensus 1117 --l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~------~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~----~ 1184 (2096)
...-...|+. |++++|..+|+++++..|.. ......+-.++..+|+|+..+.+.+..+...++... .
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 195 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY 195 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHH
Confidence 1122345677 99999999999999765532 233445667788899999887777654432222111 0
Q ss_pred -HhHHHHHHHHhcCChhhHHHhhcc
Q 000134 1185 -WCMQGVQAAWRLGRWDLMDEYLSG 1208 (2096)
Q Consensus 1185 -~~~~~vEAAWrlg~Wd~l~~~l~~ 1208 (2096)
.......+...+|+++.-.+++..
T Consensus 196 ~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 196 KKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 111122344456888776665544
No 214
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=86.21 E-value=1 Score=57.28 Aligned_cols=110 Identities=12% Similarity=-0.005 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~ 1426 (2096)
+..|...|..+.+.|.++.|.....+|.+..+ +.+....|..+...|+..+|+..++++++-.|
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-------------- 71 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-------------- 71 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT--------------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--------------
Confidence 34455566677889999999999999987754 46778899999999999999999999876311
Q ss_pred cCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhh
Q 000134 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKY 1496 (2096)
Q Consensus 1427 ~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y 1496 (2096)
..++++..+|.-....|+ .+++++.|++|++++|....+++.+|..
T Consensus 72 ----------------------~~~~~~~~lg~~~~~~g~--~~eA~~~~~~al~~~p~~~~~~~~l~~~ 117 (477)
T 1wao_1 72 ----------------------KYIKGYYRRAASNMALGK--FRAALRDYETVVKVKPHDKDAKMKYQEC 117 (477)
T ss_dssp ----------------------TCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred ----------------------CCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 013455566665555554 7889999999999999888888888775
No 215
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=86.08 E-value=3.4 Score=39.66 Aligned_cols=30 Identities=7% Similarity=-0.056 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHhccch------HHHHHHHHhhhH
Q 000134 1469 KEDVITLYSRVRELQPMW------EKGYFYMAKYCD 1498 (2096)
Q Consensus 1469 ~~~i~~~Y~~a~~l~~~w------eK~~~~la~y~d 1498 (2096)
.++.++.|+++++++|.. .++++.+|..+.
T Consensus 54 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 89 (111)
T 2l6j_A 54 YTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQG 89 (111)
T ss_dssp HHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence 444555555555555554 455555555544
No 216
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=85.94 E-value=4.7 Score=47.08 Aligned_cols=99 Identities=11% Similarity=0.055 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~ 1426 (2096)
+..|...|....+.|+++.|...+.+|.... .+.+....|..+...|+..+|+..++++++..|
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-------------- 69 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-------------- 69 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT--------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--------------
Confidence 5678899999999999999999999998765 456788999999999999999999999875211
Q ss_pred cCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Q 000134 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM 1485 (2096)
Q Consensus 1427 ~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~ 1485 (2096)
..++++..+|.-+...|+ .++.++.|++|.++.|.
T Consensus 70 ----------------------~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~l~p~ 104 (281)
T 2c2l_A 70 ----------------------QSVKAHFFLGQCQLEMES--YDEAIANLQRAYSLAKE 104 (281)
T ss_dssp ----------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHH
T ss_pred ----------------------CCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCcc
Confidence 013456666666655554 77888889999888874
No 217
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=85.75 E-value=4.9 Score=37.06 Aligned_cols=43 Identities=14% Similarity=0.137 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhh
Q 000134 1453 TLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497 (2096)
Q Consensus 1453 a~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~ 1497 (2096)
++..+|......++ .++.++.|.++++.+|.-..+++.+|..+
T Consensus 45 ~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 45 AWYNLGNAYYKQGD--YDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh--HHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34444444444433 56666667777777766666666666554
No 218
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=85.63 E-value=2.2 Score=53.95 Aligned_cols=89 Identities=9% Similarity=0.092 Sum_probs=68.4
Q ss_pred HHHHhHhhcCHHHHHHHHHHHHccCCCc---------------hhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhh
Q 000134 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTS---------------VQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKT 1184 (2096)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~---------------~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~ 1184 (2096)
+...+.+.|+|++|..+|+++++..|++ ...+..+=.|+..+|+|+..+.+.+..+...|+....
T Consensus 274 ~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a 353 (457)
T 1kt0_A 274 KGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKG 353 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHH
Confidence 4556778999999999999999988887 4667788889999999999988888766666654443
Q ss_pred HhHHHHHHHHhcCChhhHHHhhccc
Q 000134 1185 WCMQGVQAAWRLGRWDLMDEYLSGA 1209 (2096)
Q Consensus 1185 ~~~~~vEAAWrlg~Wd~l~~~l~~~ 1209 (2096)
++ ....|...+|+|+.-.+++..+
T Consensus 354 ~~-~~g~a~~~~g~~~~A~~~~~~a 377 (457)
T 1kt0_A 354 LY-RRGEAQLLMNEFESAKGDFEKV 377 (457)
T ss_dssp HH-HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HH-HHHHHHHHccCHHHHHHHHHHH
Confidence 33 3456778899998776665543
No 219
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=85.50 E-value=0.94 Score=45.18 Aligned_cols=56 Identities=11% Similarity=0.070 Sum_probs=47.8
Q ss_pred HHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhcc
Q 000134 1122 LSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISR 1177 (2096)
Q Consensus 1122 l~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~ 1177 (2096)
..|...|++++|..+|+++++..|++......+-.|+..+|+++..+...+..+..
T Consensus 35 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 35 STFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34678999999999999999999999988888999999999999887766654443
No 220
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=85.03 E-value=6.1 Score=43.92 Aligned_cols=148 Identities=13% Similarity=0.078 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHcC----ChHHHHHHHHHHhhcCCChHHHHHHHHHHH----cCCchHHHHHHHHHhhcCCcccccccc
Q 000134 1349 GNCWLQYAKLCRLAG----HYETATRAILEAQASGAPNVHMEKAKLLWS----TRRSDGAIAELQQNLLNKPVEVVGSTA 1420 (2096)
Q Consensus 1349 ~~~WL~~AklARKag----~~~~A~~all~a~~~~~~~~~iE~AKLLW~----~g~~~~Ai~~L~~~i~~~~~~~~~~~~ 1420 (2096)
...+...+.+-.. | .++.|...+.+|...+.+.+...-+.++.. .++..+|+..++++++..+
T Consensus 50 ~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~-------- 120 (212)
T 3rjv_A 50 GDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSE-------- 120 (212)
T ss_dssp HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT--------
T ss_pred HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC--------
Confidence 3456666766666 5 789999999999888999999999999887 8899999999998864210
Q ss_pred cccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHHhccchHHHHHHHHhhhH
Q 000134 1421 ISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYT-G-QKQKEDVITLYSRVRELQPMWEKGYFYMAKYCD 1498 (2096)
Q Consensus 1421 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~-~-~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d 1498 (2096)
....+.++..+|.....- + ..+.+..++.|++|++. +....+++.+|..|.
T Consensus 121 --------------------------~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~ 173 (212)
T 3rjv_A 121 --------------------------SDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQ 173 (212)
T ss_dssp --------------------------SHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHH
T ss_pred --------------------------CcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 002255777888766542 2 45689999999999998 445568999999874
Q ss_pred HHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcchhhhHH
Q 000134 1499 DVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALP 1548 (2096)
Q Consensus 1499 ~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~~~q~lp 1548 (2096)
+-. .|... .-...++..|-+++..|+......+-
T Consensus 174 ~g~------------gg~~~----~d~~~A~~~~~~A~~~g~~~A~~~l~ 207 (212)
T 3rjv_A 174 QGE------------KGFIE----PNKQKALHWLNVSCLEGFDTGCEEFD 207 (212)
T ss_dssp HCB------------TTTBC----CCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCC------------CCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 210 00000 01346899999999999876544443
No 221
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=85.01 E-value=5.9 Score=43.82 Aligned_cols=58 Identities=12% Similarity=0.095 Sum_probs=35.2
Q ss_pred HHHHHHHhhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHh
Q 000134 148 LLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYF 217 (2096)
Q Consensus 148 ~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~ 217 (2096)
.-+.+.++|.+ .+.+|+..++..|.++-.. + .+.-|..++.|++..||.++...+..+
T Consensus 51 ~~~~L~~~l~~-~~~~vr~~a~~aL~~~~~~---~--------~~~~L~~~l~~~~~~vr~~a~~aL~~~ 108 (211)
T 3ltm_A 51 AVEPLIKALKD-EDAWVRRAAADALGQIGDE---R--------AVEPLIKALKDEDGWVRQSAAVALGQI 108 (211)
T ss_dssp GHHHHHHHTTC-SCHHHHHHHHHHHHHHCCG---G--------GHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHhhCCH---H--------HHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 34445666654 4677888888777776321 1 111222334788888888888877764
No 222
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=84.97 E-value=38 Score=39.15 Aligned_cols=119 Identities=11% Similarity=-0.035 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC--------hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccc
Q 000134 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASGAP--------NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGST 1419 (2096)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~all~a~~~~~~--------~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~ 1419 (2096)
....|+.-+......|.++.|...+.++...... .+..-.+.++..+|+..+|+..++++++..+..
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~----- 148 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG----- 148 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS-----
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC-----
Confidence 3456778888899999999999988877654322 122334566678889999999999987521100
Q ss_pred ccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---ccchH----HHHHH
Q 000134 1420 AISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVREL---QPMWE----KGYFY 1492 (2096)
Q Consensus 1420 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l---~~~we----K~~~~ 1492 (2096)
......+.++..+|.-....|+ .++.+..|.+|.+. .+... .+++.
T Consensus 149 -------------------------~~~~~~~~~~~~lg~~y~~~~~--~~~A~~~~~kal~~~~~~~~~~~~~~~~~~n 201 (293)
T 2qfc_A 149 -------------------------IDVYQNLYIENAIANIYAENGY--LKKGIDLFEQILKQLEALHDNEEFDVKVRYN 201 (293)
T ss_dssp -------------------------SCTTHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred -------------------------CchHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHhcCccccchHHHHHh
Confidence 0011236677777776666554 78899999999854 33211 46777
Q ss_pred HHhhhH
Q 000134 1493 MAKYCD 1498 (2096)
Q Consensus 1493 la~y~d 1498 (2096)
+|..|.
T Consensus 202 lg~~y~ 207 (293)
T 2qfc_A 202 HAKALY 207 (293)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777664
No 223
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=84.40 E-value=0.5 Score=47.25 Aligned_cols=81 Identities=12% Similarity=0.074 Sum_probs=59.0
Q ss_pred hhcCHHHHHHHHHHHHcc---CCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChhhH
Q 000134 1126 KSGNWAEVFTSCEQALQM---EPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLM 1202 (2096)
Q Consensus 1126 ~~G~W~~A~~~YE~~Lq~---~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd~l 1202 (2096)
..|++++|..+|+++++. .|++.....++-.|+..+|+++..+.+.+......|+...-+. ....+-..+|+++.-
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRV-FYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHH-HHHHHHHHcCCHHHH
Confidence 468999999999999998 5888888888999999999999998888877666666533333 334567788888776
Q ss_pred HHhhc
Q 000134 1203 DEYLS 1207 (2096)
Q Consensus 1203 ~~~l~ 1207 (2096)
.+++.
T Consensus 81 ~~~~~ 85 (117)
T 3k9i_A 81 VELLL 85 (117)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 224
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=84.08 E-value=57 Score=46.35 Aligned_cols=103 Identities=9% Similarity=0.101 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHh-----ccccc-cchhhHHHHHHH-HhcCCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhh-
Q 000134 519 ALKRIEILIEMI-----GSHLT-TYVPKILVLLMH-AINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIP- 590 (2096)
Q Consensus 519 ~l~sl~~li~l~-----g~~v~-~~~pqI~a~L~~-aL~~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip- 590 (2096)
.+..++.+++-+ ++++. ...|+++..|.+ -.+.|-++...+.||..+..-++. .|+.+.+++.-++..+.-
T Consensus 506 ~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~-~p~~L~~vL~~ll~~l~~~ 584 (1204)
T 3a6p_A 506 MTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTY-RPEFLPQVFSKLFSSVTFE 584 (1204)
T ss_dssp HHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGT-CGGGHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHhhccC
Confidence 344555555554 34554 367888887655 345677888999999988887764 577889999988888742
Q ss_pred cccc-CCC---CchhhHHHHHHHHHHHHHHhHHHHH
Q 000134 591 FLER-DKD---NPSVLLNKVVKILEDLVLKNRAILK 622 (2096)
Q Consensus 591 ~~~~-~~~---~~~~~~~~~~~il~~Li~~n~~~L~ 622 (2096)
..+. .+. ..+..+..|...|.+|-.+.++.|.
T Consensus 585 ~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~ 620 (1204)
T 3a6p_A 585 TVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVL 620 (1204)
T ss_dssp TTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHG
T ss_pred CcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 1110 000 1224667888899999998888875
No 225
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=83.87 E-value=2.2 Score=42.05 Aligned_cols=54 Identities=9% Similarity=0.051 Sum_probs=44.8
Q ss_pred HhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhc
Q 000134 1123 SNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLIS 1176 (2096)
Q Consensus 1123 ~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~ 1176 (2096)
.+...|+|++|..+|+++++..|++......+-.|+..+|+++......+....
T Consensus 28 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 28 TYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356789999999999999999999888888888899999999887776655433
No 226
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=83.51 E-value=7.7 Score=46.54 Aligned_cols=153 Identities=16% Similarity=0.072 Sum_probs=98.4
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhccCCh-----h
Q 000134 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSL-----Q 1118 (2096)
Q Consensus 1044 ~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~~sl-----~ 1118 (2096)
.++|.+....|.|..||..++..+..... + ...+.+-.+..||-.++.+|-..-+.......+. +
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~---~-------~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~ 173 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEA---E-------GTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGD 173 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCS---T-------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCC---c-------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccc
Confidence 37899999999999999999998653210 0 1235667899999999999999998864322222 1
Q ss_pred HHHHH-------h--HhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhh--------
Q 000134 1119 DELLS-------N--KKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQY-------- 1181 (2096)
Q Consensus 1119 ~qil~-------~--E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~-------- 1181 (2096)
+.++. . ...++..+|...|+.+.+..|+ ......+++|...+|+|+.+....+.+....|+.
T Consensus 174 d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~-~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p 252 (310)
T 3mv2_B 174 NEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT-WKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVL 252 (310)
T ss_dssp HHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS-HHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHS
T ss_pred hHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC-cccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCC
Confidence 22211 1 2234999999999998888876 2223456669999999998776665444332221
Q ss_pred -hhhHhHHHHHHHHhcCChhhHHHhhccc
Q 000134 1182 -KKTWCMQGVQAAWRLGRWDLMDEYLSGA 1209 (2096)
Q Consensus 1182 -~~~~~~~~vEAAWrlg~Wd~l~~~l~~~ 1209 (2096)
..+...-.+-.+..+|+ .-++++.+.
T Consensus 253 ~~~~~LaN~i~l~~~lgk--~a~~l~~qL 279 (310)
T 3mv2_B 253 YKPTFLANQITLALMQGL--DTEDLTNQL 279 (310)
T ss_dssp SHHHHHHHHHHHHHHTTC--TTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCh--HHHHHHHHH
Confidence 11112123445666786 445665544
No 227
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=83.26 E-value=1e+02 Score=38.57 Aligned_cols=149 Identities=7% Similarity=0.053 Sum_probs=90.6
Q ss_pred HHHHHhhcccCccchhhHHHHHHHHHHccCCch-hhhhhhhHHHHHHHHHhh-cccHHHHHHHHHHHhHhhhhh-hhhhh
Q 000134 150 NIYFEFLYDESSEEVQLSCVRVIRRILVHGTRD-VLLKTRSEWIKCIEFLLL-NKRKAIRDAFCTQIGYFLQDT-VLSSL 226 (2096)
Q Consensus 150 ~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~-~~~~~~~~w~~~~~~~~~-~~~r~vR~a~~~~~~~~~~~~-~~~~~ 226 (2096)
+.+.++|. ..+.+|+..++..|.++..+...- ..... ...+.-+-.+|. +++..+|..+++.+..+-.++ ....+
T Consensus 20 ~~Lv~lL~-~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~-~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i 97 (529)
T 1jdh_A 20 PELTKLLN-DEDQVVVNKAAVMVHQLSKKEASRHAIMRS-PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 97 (529)
T ss_dssp HHHHHHHT-CSCHHHHHHHHHHHHHHHTSHHHHHHHHTC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHHcCCccHHHHHhC-cchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHH
Confidence 34556665 456788888999999998775421 11111 122332233334 458999999999999854111 11111
Q ss_pred ccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhH--HHHHHHHHHhhCCCCcchHHHHHHH
Q 000134 227 FLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHF--LFLLILLVEQLDNPHVTVRMNASRL 304 (2096)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~--~~~l~~Li~~L~~~n~~v~~~A~~~ 304 (2096)
+. ...+..+-+.+ ...|+.+++..+.+++.+....+...+.+ .-++-.|++.|.++++-++..|..-
T Consensus 98 ~~----------~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~ 166 (529)
T 1jdh_A 98 FK----------SGGIPALVKML-GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDC 166 (529)
T ss_dssp HH----------TTHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHH
T ss_pred HH----------cCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 11 12344444433 34678899999999999854322222222 2245568999999999999988888
Q ss_pred HHHHhhh
Q 000134 305 IRKSCFF 311 (2096)
Q Consensus 305 i~~l~~~ 311 (2096)
+.++|..
T Consensus 167 L~~la~~ 173 (529)
T 1jdh_A 167 LQILAYG 173 (529)
T ss_dssp HHHHHTT
T ss_pred HHHHHhC
Confidence 8888753
No 228
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=83.25 E-value=1.8e+02 Score=41.30 Aligned_cols=45 Identities=13% Similarity=0.225 Sum_probs=32.1
Q ss_pred CCCCcchHHHHHHHHHHHhhhhcccccccccchhhhhhhhhhHHHHHH
Q 000134 291 DNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVR 338 (2096)
Q Consensus 291 ~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ 338 (2096)
.+.++.+|..|...+.+..++++.. +-..-+..||+.+..++...
T Consensus 57 ~s~~~~vR~~A~~~Lk~~I~~~W~~---l~~e~k~~Ir~~ll~~l~~~ 101 (1204)
T 3a6p_A 57 KTQVAIVRHFGLQILEHVVKFRWNG---MSRLEKVYLKNSVMELIANG 101 (1204)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHSGGG---SCHHHHHHHHHHHHHHHHHS
T ss_pred cCCCHHHHHHHHHHHHHHHHHhccc---CCHHHHHHHHHHHHHHHHhh
Confidence 4567899999999999988887753 33344556777777776654
No 229
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=82.98 E-value=9.2 Score=45.54 Aligned_cols=139 Identities=10% Similarity=0.045 Sum_probs=90.6
Q ss_pred cchhhHHHHHHHHHHccCC-chhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhh-hhh-hhccCcccccchhh
Q 000134 162 EEVQLSCVRVIRRILVHGT-RDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDT-VLS-SLFLDENASSRSNE 238 (2096)
Q Consensus 162 ~~v~~~~~~~l~~il~h~~-~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~ 238 (2096)
.+-+......|..++.... .+...+ .+-+-.++..+|.+++..||..++.+|..+.++. -.. .+..
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~-~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~---------- 122 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQ-LSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLG---------- 122 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHH-TTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHH-cCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH----------
Confidence 3456667788888776432 111222 2445456664669999999999999999976332 110 1111
Q ss_pred HHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHH--HHHHHHHhhCCCCcchHHHHHHHHHHHhhh
Q 000134 239 LKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLF--LLILLVEQLDNPHVTVRMNASRLIRKSCFF 311 (2096)
Q Consensus 239 ~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~--~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~ 311 (2096)
...+..+-+.+....++.+++..+-+++.|.+......+.|.- .+-.|+..|.++++.++..|..-|.++|..
T Consensus 123 ~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~ 197 (296)
T 1xqr_A 123 LGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG 197 (296)
T ss_dssp TTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 1244455555555557889999999999986533222333322 444688888899999999999999999775
No 230
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=82.83 E-value=72 Score=36.57 Aligned_cols=128 Identities=16% Similarity=0.054 Sum_probs=83.3
Q ss_pred HHHhhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcc
Q 000134 152 YFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDEN 231 (2096)
Q Consensus 152 ~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~ 231 (2096)
+.++|-+ .+..|+...+..|.++- ..+ -+.-|..++.|++..||.++...+..+- .
T Consensus 28 L~~~L~~-~~~~vr~~A~~~L~~~~---~~~--------~~~~L~~~l~d~~~~vR~~A~~aL~~l~-----------~- 83 (280)
T 1oyz_A 28 LFRLLDD-HNSLKRISSARVLQLRG---GQD--------AVRLAIEFCSDKNYIRRDIGAFILGQIK-----------I- 83 (280)
T ss_dssp HHHHTTC-SSHHHHHHHHHHHHHHC---CHH--------HHHHHHHHHTCSSHHHHHHHHHHHHHSC-----------C-
T ss_pred HHHHHHc-CCHHHHHHHHHHHHccC---Cch--------HHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------c-
Confidence 5556654 56788888888888763 222 1223344569999999999998887632 0
Q ss_pred cccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHH
Q 000134 232 ASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKS 308 (2096)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l 308 (2096)
.......++..+.+.+..-+|+.+....+.++|.++.... +...-++-.|+..|.++++.||..|..-+-++
T Consensus 84 --~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~---~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~ 155 (280)
T 1oyz_A 84 --CKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNP---IYSPKIVEQSQITAFDKSTNVRRATAFAISVI 155 (280)
T ss_dssp --CTTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG---GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred --ccccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC---cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhc
Confidence 0111223444455445566788999999999999853221 11112345577888999999999988877655
No 231
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=82.78 E-value=14 Score=40.47 Aligned_cols=63 Identities=16% Similarity=0.132 Sum_probs=37.7
Q ss_pred CChhhHHHHHHHhhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHh
Q 000134 143 SDFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYF 217 (2096)
Q Consensus 143 ~~~~~~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~ 217 (2096)
...+...+.+.++|-+ .+.+|+...+..|.++-.. .. +.-|-.++.|++..||.++...+..+
T Consensus 10 ~~~~~~~~~~i~~L~~-~~~~vr~~A~~~L~~~~~~---~~--------~~~L~~~l~~~~~~vr~~a~~~L~~~ 72 (201)
T 3ltj_A 10 HTDPEKVEMYIKNLQD-DSYYVRRAAAYALGKIGDE---RA--------VEPLIKALKDEDAWVRRAAADALGQI 72 (201)
T ss_dssp CCCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHCCG---GG--------HHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred ccCCcchHHHHHHhcC-CCHHHHHHHHHHHHhcCCh---hH--------HHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 3445566767777654 4567888877777765321 10 11122233777888888877777664
No 232
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=82.73 E-value=1e+02 Score=38.25 Aligned_cols=138 Identities=12% Similarity=0.122 Sum_probs=98.2
Q ss_pred HHHHHHHHHH-H--HHcCChHHHHHHHHHHhhcCCChHHHHHHHHHHHcC-----CchHHHHHHHHHhhcCCcccccccc
Q 000134 1349 GNCWLQYAKL-C--RLAGHYETATRAILEAQASGAPNVHMEKAKLLWSTR-----RSDGAIAELQQNLLNKPVEVVGSTA 1420 (2096)
Q Consensus 1349 ~~~WL~~Akl-A--RKag~~~~A~~all~a~~~~~~~~~iE~AKLLW~~g-----~~~~Ai~~L~~~i~~~~~~~~~~~~ 1420 (2096)
...|...+.+ - ...|.++.|...+.+|...+.+.+...-+.++. .| +..+|+..++++. . |
T Consensus 248 ~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~------g--- 316 (452)
T 3e4b_A 248 PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G------R--- 316 (452)
T ss_dssp THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T------T---
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C------C---
Confidence 4456666665 3 568899999999999999999999998898877 66 8889999888653 1 0
Q ss_pred cccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhccchHHHHHHHHhhh
Q 000134 1421 ISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTG---QKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497 (2096)
Q Consensus 1421 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~---~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~ 1497 (2096)
.+.++..+|.+... | ..+.+...+.|++|.+.. ...+++.+|..|
T Consensus 317 -----------------------------~~~A~~~Lg~~y~~-G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y 364 (452)
T 3e4b_A 317 -----------------------------EVAADYYLGQIYRR-GYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLF 364 (452)
T ss_dssp -----------------------------CHHHHHHHHHHHHT-TTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHH
T ss_pred -----------------------------CHHHHHHHHHHHHC-CCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHH
Confidence 03466777765543 3 346888999999998754 467899999887
Q ss_pred HHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcchhhhH
Q 000134 1498 DDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQAL 1547 (2096)
Q Consensus 1498 d~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~~~q~l 1547 (2096)
..= .|.. .-...++..|-++...|+......+
T Consensus 365 ~~G-------------~g~~-----~d~~~A~~~~~~A~~~g~~~a~~~l 396 (452)
T 3e4b_A 365 SQG-------------KGTK-----PDPLNAYVFSQLAKAQDTPEANDLA 396 (452)
T ss_dssp HSC-------------TTBC-----CCHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HhC-------------CCCC-----CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 421 1110 1234688999999999987544333
No 233
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=82.66 E-value=1.8 Score=55.20 Aligned_cols=86 Identities=12% Similarity=0.094 Sum_probs=67.2
Q ss_pred HHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChhh
Q 000134 1122 LSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDL 1201 (2096)
Q Consensus 1122 l~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd~ 1201 (2096)
..+...|+|++|..+|+++++..|++......+-.|+.++|+|+..+.+.+......|+....+.. ...+...+|+|+.
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~-lg~~~~~~g~~~e 92 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR-RAASNMALGKFRA 92 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHH-HHHHHHHHTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHH
Confidence 346688999999999999999999998888888999999999999888877766666655443333 3456678899987
Q ss_pred HHHhhcc
Q 000134 1202 MDEYLSG 1208 (2096)
Q Consensus 1202 l~~~l~~ 1208 (2096)
-.+++..
T Consensus 93 A~~~~~~ 99 (477)
T 1wao_1 93 ALRDYET 99 (477)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665544
No 234
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=82.64 E-value=86 Score=37.45 Aligned_cols=121 Identities=15% Similarity=0.139 Sum_probs=91.6
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CC-----ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccc
Q 000134 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQAS----GA-----PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVV 1416 (2096)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~all~a~~~----~~-----~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~ 1416 (2096)
...+..|...|.+....|.++.|.....+|... +. ..+...-+.++...|+..+|+..++++++-.+
T Consensus 140 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~---- 215 (383)
T 3ulq_A 140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAE---- 215 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----
Confidence 456888999999999999999999999888654 21 12455667889999999999999999875211
Q ss_pred cccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-----c-cchHHHH
Q 000134 1417 GSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVREL-----Q-PMWEKGY 1490 (2096)
Q Consensus 1417 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l-----~-~~weK~~ 1490 (2096)
...+....+.++.-+|.-....|+ .++.++.|++|+++ . +....++
T Consensus 216 --------------------------~~~~~~~~~~~~~~lg~~y~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 216 --------------------------AEKQPQLMGRTLYNIGLCKNSQSQ--YEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp --------------------------HTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred --------------------------HcCChHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 001233557788888887766664 88999999999984 4 6666778
Q ss_pred HHHHhhhH
Q 000134 1491 FYMAKYCD 1498 (2096)
Q Consensus 1491 ~~la~y~d 1498 (2096)
+.+|..|-
T Consensus 268 ~~l~~~~~ 275 (383)
T 3ulq_A 268 FLITQIHY 275 (383)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887764
No 235
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=82.14 E-value=6.2 Score=52.52 Aligned_cols=112 Identities=10% Similarity=0.175 Sum_probs=83.7
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc-C--CChHHHHHHHHHHHcCC-chHHHHHHHHHhhcCCcccccccccc
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQAS-G--APNVHMEKAKLLWSTRR-SDGAIAELQQNLLNKPVEVVGSTAIS 1422 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~-~--~~~~~iE~AKLLW~~g~-~~~Ai~~L~~~i~~~~~~~~~~~~~~ 1422 (2096)
.....|+.++++.|..|.++.|...+.+|.+. + .+.+.++.|.+.|..|. ...|-++++.+++..+.
T Consensus 432 ~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~--------- 502 (679)
T 4e6h_A 432 KLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFAT--------- 502 (679)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT---------
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC---------
Confidence 34668999999999999999999988888765 3 46788999999998765 79999999998874221
Q ss_pred cccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc---chHHHHHHHHhh
Q 000134 1423 SITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQP---MWEKGYFYMAKY 1496 (2096)
Q Consensus 1423 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~---~weK~~~~la~y 1496 (2096)
. ....+.|+++....| ..+.+...|..|++..+ +-...|-.|.+|
T Consensus 503 ------------------------~---~~~w~~y~~fe~~~~--~~~~AR~lferal~~~~~~~~~~~lw~~~~~f 550 (679)
T 4e6h_A 503 ------------------------D---GEYINKYLDFLIYVN--EESQVKSLFESSIDKISDSHLLKMIFQKVIFF 550 (679)
T ss_dssp ------------------------C---HHHHHHHHHHHHHHT--CHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHH
T ss_pred ------------------------c---hHHHHHHHHHHHhCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 0 223456666655554 47888999999999887 344556666554
No 236
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=81.78 E-value=2.1 Score=52.59 Aligned_cols=87 Identities=20% Similarity=0.194 Sum_probs=56.6
Q ss_pred HHHHhHhhcCHHHHHHHHHHHHc----------------cCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhh
Q 000134 1120 ELLSNKKSGNWAEVFTSCEQALQ----------------MEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKK 1183 (2096)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq----------------~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~ 1183 (2096)
....+.+.|+|++|..+|+++++ ..|.+......+-.|+..+|+|+..+.+.+..+...|+...
T Consensus 229 ~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~ 308 (370)
T 1ihg_A 229 IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTK 308 (370)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHH
Confidence 34456677888888888888876 45555556667777788888888777777666555555433
Q ss_pred hHhHHHHHHHHhcCChhhHHHhhc
Q 000134 1184 TWCMQGVQAAWRLGRWDLMDEYLS 1207 (2096)
Q Consensus 1184 ~~~~~~vEAAWrlg~Wd~l~~~l~ 1207 (2096)
.+. ....+...+|+|+.-.+++.
T Consensus 309 a~~-~lg~~~~~~g~~~eA~~~l~ 331 (370)
T 1ihg_A 309 ALY-RRAQGWQGLKEYDQALADLK 331 (370)
T ss_dssp HHH-HHHHHHHHTTCHHHHHHHHH
T ss_pred HHH-HHHHHHHHccCHHHHHHHHH
Confidence 333 23445667777766555444
No 237
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=81.67 E-value=6.3 Score=53.78 Aligned_cols=203 Identities=10% Similarity=0.139 Sum_probs=121.3
Q ss_pred HHHHhhhcccchhhhhhhhhhchhhhhhhcCccchHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCccccccccccc
Q 000134 6 SEILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDKN 85 (2096)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (2096)
.+.|--.|.|+...++..|+++|-.+.+-+|-. ..+-..|..+..+.+++|++..+.+||++. +|.-..+...
T Consensus 474 ~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~--~ai~~LL~~~~e~~~e~vrR~aalgLGll~--~g~~e~~~~l--- 546 (963)
T 4ady_A 474 YEALKEVLYNDSATSGEAAALGMGLCMLGTGKP--EAIHDMFTYSQETQHGNITRGLAVGLALIN--YGRQELADDL--- 546 (963)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH--HHHHHHHHHHHHCSCHHHHHHHHHHHHHHT--TTCGGGGHHH---
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHhhh--CCChHHHHHH---
Confidence 344444556666677878888887776655533 333344444445667889999999999883 3433111100
Q ss_pred ccccccccccccccccHHh-hhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhcccCccch
Q 000134 86 ACKLLLNVEDDILSQTVDY-LLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEV 164 (2096)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~-~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v 164 (2096)
.+++..+. +..+.+ ..--.-|+.|+.+-+.+ ++. ++..+.+..++.|
T Consensus 547 -i~~L~~~~----dp~vRygaa~alglAyaGTGn~~a--------------------------Iq~-LL~~~~~d~~d~V 594 (963)
T 4ady_A 547 -ITKMLASD----ESLLRYGGAFTIALAYAGTGNNSA--------------------------VKR-LLHVAVSDSNDDV 594 (963)
T ss_dssp -HHHHHHCS----CHHHHHHHHHHHHHHTTTSCCHHH--------------------------HHH-HHHHHHHCSCHHH
T ss_pred -HHHHHhCC----CHHHHHHHHHHHHHHhcCCCCHHH--------------------------HHH-HHHHhccCCcHHH
Confidence 01111111 011111 11122467777763222 555 4445556677889
Q ss_pred hhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHHHHH
Q 000134 165 QLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDV 244 (2096)
Q Consensus 165 ~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (2096)
+-+.+.+|.-|+.-.. +. -.+.++.|+.+.+..||.+++-++..+ .++ ......++.
T Consensus 595 RraAViaLGlI~~g~~-e~-------v~rlv~~L~~~~d~~VR~gAalALGli----------~aG-----n~~~~aid~ 651 (963)
T 4ady_A 595 RRAAVIALGFVLLRDY-TT-------VPRIVQLLSKSHNAHVRCGTAFALGIA----------CAG-----KGLQSAIDV 651 (963)
T ss_dssp HHHHHHHHHHHTSSSC-SS-------HHHHTTTGGGCSCHHHHHHHHHHHHHH----------TSS-----SCCHHHHHH
T ss_pred HHHHHHHHHhhccCCH-HH-------HHHHHHHHHhcCCHHHHHHHHHHHHHh----------ccC-----CCcHHHHHH
Confidence 9999999998875543 21 234566677899999999999888762 111 123556666
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHHhh
Q 000134 245 IKLAFTAADDPLILETLLESTAELMMA 271 (2096)
Q Consensus 245 ~~~~~~~~~d~~i~eTll~~~~~i~~~ 271 (2096)
+.. ++.-.|+.|....++++|.|+.+
T Consensus 652 L~~-L~~D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 652 LDP-LTKDPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp HHH-HHTCSSHHHHHHHHHHHHHHSTT
T ss_pred HHH-HccCCCHHHHHHHHHHHHHHhcC
Confidence 666 45556777999999999999643
No 238
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=81.55 E-value=3.1 Score=45.03 Aligned_cols=63 Identities=11% Similarity=0.165 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcc
Q 000134 1469 KEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2096)
Q Consensus 1469 ~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~ 1542 (2096)
.++.+..|++|++++|+...+||.+|.-|.++-.- .+...........|+.+|-+++...+++
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l-----------~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFL-----------TPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH-----------CCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhccc-----------CcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 67899999999999999999999999988654210 0000011123457999999999988764
No 239
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=81.05 E-value=8.8 Score=46.38 Aligned_cols=156 Identities=10% Similarity=-0.013 Sum_probs=97.9
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH-----hccCC---
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL-----HKSLS--- 1116 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~-----~~~~s--- 1116 (2096)
..+.....-|.|..|+.+++.-........++ ......+..|..+|..+++++........ ....+
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~------~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 179 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDD------IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSI 179 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCCh------HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchh
Confidence 35677788899999999999876543211110 00123467889999999999977665431 11111
Q ss_pred -----hhHHHHHhHhhcCHHHHHHHHHHHHccCC---Cc---hhhhhhHHHHHHhccChHHHHHHhhhhhc-----cChh
Q 000134 1117 -----LQDELLSNKKSGNWAEVFTSCEQALQMEP---TS---VQRHSDVLNCLLNMCHLQAMVTHVDGLIS-----RIPQ 1180 (2096)
Q Consensus 1117 -----l~~qil~~E~~G~W~~A~~~YE~~Lq~~p---~~---~~~~~glL~CL~~LGq~~~ll~~~~gl~~-----~~p~ 1180 (2096)
...-...|...|+|++|..+|+++++..+ +. .....++=.|+..+|+++..+.+.+.... ..|.
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 259 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL 259 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh
Confidence 11234567899999999999999987432 11 12334555678888999988777765444 3343
Q ss_pred hhhhHhHHHHHHHHhcCChhhHHHhhc
Q 000134 1181 YKKTWCMQGVQAAWRLGRWDLMDEYLS 1207 (2096)
Q Consensus 1181 ~~~~~~~~~vEAAWrlg~Wd~l~~~l~ 1207 (2096)
. ......-..+...+|+++.-.+++.
T Consensus 260 ~-~~~~~~la~~~~~~g~~~~A~~~~~ 285 (378)
T 3q15_A 260 L-PKVLFGLSWTLCKAGQTQKAFQFIE 285 (378)
T ss_dssp H-HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3 2222233456677888877655543
No 240
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=80.85 E-value=11 Score=41.15 Aligned_cols=56 Identities=11% Similarity=0.083 Sum_probs=35.1
Q ss_pred HHHHHhhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHh
Q 000134 150 NIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYF 217 (2096)
Q Consensus 150 ~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~ 217 (2096)
+.+.++|. ..+.+|+...+..|.++-.. + .+.-|..++.|++..||.++..++..+
T Consensus 48 ~~L~~~l~-~~~~~vr~~a~~~L~~~~~~---~--------~~~~L~~~l~d~~~~vr~~a~~aL~~~ 103 (201)
T 3ltj_A 48 EPLIKALK-DEDAWVRRAAADALGQIGDE---R--------AVEPLIKALKDEDGWVRQSAAVALGQI 103 (201)
T ss_dssp HHHHHHTT-CSSHHHHHHHHHHHHHHCCG---G--------GHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHHHhhCCH---H--------HHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 44556664 44667888888888776321 1 112233345888888888888888774
No 241
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=80.74 E-value=4.6 Score=39.13 Aligned_cols=63 Identities=17% Similarity=0.010 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
.....|...|.+..+.|+++.|...+.+|.... .+.+....|..+...|+..+|+..+++++.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 446789999999999999999999999998775 467888999999999999999999999875
No 242
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=79.96 E-value=14 Score=39.52 Aligned_cols=85 Identities=9% Similarity=0.019 Sum_probs=46.8
Q ss_pred HHhHhhcCHHHHHHHHHHHHcc---CCCc----hhhhhhHHHHHHhccChHHHHHHhhhhhcc---C--hhhhhhHhHHH
Q 000134 1122 LSNKKSGNWAEVFTSCEQALQM---EPTS----VQRHSDVLNCLLNMCHLQAMVTHVDGLISR---I--PQYKKTWCMQG 1189 (2096)
Q Consensus 1122 l~~E~~G~W~~A~~~YE~~Lq~---~p~~----~~~~~glL~CL~~LGq~~~ll~~~~gl~~~---~--p~~~~~~~~~~ 1189 (2096)
..|...|++++|..+|+++++. .+++ ......+=.++..+|+++....+.+..... . +..........
T Consensus 74 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 153 (203)
T 3gw4_A 74 MVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGL 153 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 3466778888888888887764 3322 122344555667778887766655432211 1 10111111233
Q ss_pred HHHHHhcCChhhHHHhh
Q 000134 1190 VQAAWRLGRWDLMDEYL 1206 (2096)
Q Consensus 1190 vEAAWrlg~Wd~l~~~l 1206 (2096)
..+.+..|+|+.-.+++
T Consensus 154 a~~~~~~g~~~~A~~~~ 170 (203)
T 3gw4_A 154 GDLAQQEKNLLEAQQHW 170 (203)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHH
Confidence 45677788887765544
No 243
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=79.87 E-value=18 Score=42.97 Aligned_cols=148 Identities=9% Similarity=0.033 Sum_probs=94.8
Q ss_pred HHHHhhcccCccchhhHHHHHHHHHHccCCc--hhhhhhhhHHHHHHHHHhh-cccHHHHHHHHHHHhHhhhhh--hhhh
Q 000134 151 IYFEFLYDESSEEVQLSCVRVIRRILVHGTR--DVLLKTRSEWIKCIEFLLL-NKRKAIRDAFCTQIGYFLQDT--VLSS 225 (2096)
Q Consensus 151 ~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~--~~~~~~~~~w~~~~~~~~~-~~~r~vR~a~~~~~~~~~~~~--~~~~ 225 (2096)
.+.+.|+..++.+|+...+.+|..|..+... +..++. .-+..|-.+|. +++..||..++.+|+.+..+. ....
T Consensus 85 ~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~--g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~ 162 (296)
T 1xqr_A 85 LLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGL--GALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQ 162 (296)
T ss_dssp HHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHT--THHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHC--CCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 3566234567789999999999999987652 222221 23345555556 468999999999999987321 1111
Q ss_pred hccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHH--HHHHHHHhhCCCCcchHHHHHH
Q 000134 226 LFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLF--LLILLVEQLDNPHVTVRMNASR 303 (2096)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~--~l~~Li~~L~~~n~~v~~~A~~ 303 (2096)
+... ..+..+-+.+. ..|+.++.-..-+++.++.......+.+.- ++=.|++.|.++++-++..|.+
T Consensus 163 ~~~~----------ggi~~L~~lL~-~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~ 231 (296)
T 1xqr_A 163 FLRL----------DGFSVLMRAMQ-QQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLG 231 (296)
T ss_dssp HHHT----------THHHHHHHHHH-SSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHH
T ss_pred HHHC----------CCHHHHHHHHc-CCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHH
Confidence 1111 22334444343 358889988888888886542222222221 3334888899999999999999
Q ss_pred HHHHHhhh
Q 000134 304 LIRKSCFF 311 (2096)
Q Consensus 304 ~i~~l~~~ 311 (2096)
-|.+++..
T Consensus 232 aL~~l~~~ 239 (296)
T 1xqr_A 232 ALCSLVTD 239 (296)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhC
Confidence 99888544
No 244
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=79.33 E-value=85 Score=43.33 Aligned_cols=305 Identities=11% Similarity=0.167 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhc--ccchhHHH
Q 000134 204 KAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVD--VHSQHFLF 281 (2096)
Q Consensus 204 r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~--~~~e~~~~ 281 (2096)
+.=|.+++..+..++.+.+ ..... ...+++-++.++...+++ |..++.++.|+.... ..-|-+++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~~e~~~~ 94 (986)
T 2iw3_A 28 ADNRHEIASEVASFLNGNI---------IEHDV-PEHFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPSVEPYIV 94 (986)
T ss_dssp TTTHHHHHHHHHHHHTSSC---------SSSSC-CHHHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTTTHHHHH
T ss_pred hhHHHHHHHHHHHHHhccc---------ccccc-chhHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCCcccchH
Confidence 5556666677777663332 11111 148999999999988888 999999999973332 24466655
Q ss_pred HHH-HHHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccchhhhhhhhhhHHHHHH--hcCchHHHHHHHHHHhCCCh
Q 000134 282 LLI-LLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVR--LASRPIMVREFAEAAFGVET 358 (2096)
Q Consensus 282 ~l~-~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~--l~~rp~~~~~~~e~llg~~~ 358 (2096)
.++ .+++.++.....||..|-.-+..+++.-+.. .+ ..+.+.|+.++-.. ++++--....+.. |-...
T Consensus 95 ~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~--a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~-~~~~~- 165 (986)
T 2iw3_A 95 QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV--AI-----KALLPHLTNAIVETNKWQEKIAILAAFSA-MVDAA- 165 (986)
T ss_dssp TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGG--GH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHS-
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHH--HH-----HHHHHHHHHHhccccchHHHHHHHHHHHH-HHHHh-
Confidence 443 4888889999999999999998887665332 11 11234455555221 3333222222221 22212
Q ss_pred HHHHHhhcccccchhh---hccccCh--hHHHHHHHHHH-HcCCCchhHHhhhHHHHHHHHhccccHHHHHHHHHHHhhh
Q 000134 359 EELVKKMIPAVLPKLV---VSQQDND--QAVNIINELAK-CLNTDMVPLIVTWIPKVLAFALHQADERRLLSALEFYCIQ 432 (2096)
Q Consensus 359 ~~fL~~~~~~~LP~LV---l~~~~~~--~~~~~i~~ia~-~~~~~~~~l~~~~~~~Ila~ll~~~~~~~~~~~l~~~~~~ 432 (2096)
.+-+....|-++|.+= .+-|.+. .+.+++..+|. .-|.|+.+++ |.++.-+ ..|+++.+|++-+.+-
T Consensus 166 ~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~----~~~~~~~---~~p~~~~~~~~~l~~~ 238 (986)
T 2iw3_A 166 KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFI----PSLIQCI---ADPTEVPETVHLLGAT 238 (986)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGH----HHHHHHH---HCTTHHHHHHHHHTTC
T ss_pred HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhH----HHHHHHh---cChhhhHHHHHHhhcC
Confidence 4556666666666542 2222211 13467777776 3455665543 3322222 2457799999888865
Q ss_pred cCC---ChHHHHHHhhHHHHHHHH-HhhcCCCchhHhhhhcchhHHHHHHhhhccCCCChhhhhHHHHHHHHHHhhhhhc
Q 000134 433 TGS---DNQEIFAAALPALLDELI-CFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKML 508 (2096)
Q Consensus 433 ~~~---~~~~~~~~~~~~~l~eLl-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~ 508 (2096)
|-- +... ++ ++.=|| .-+.+. .-+.+|.+ .--+..|.+++..+.+.+.||..=+=|+-...+
T Consensus 239 tfv~~v~~~~-l~-----~~~p~l~r~l~~~--~~~~~r~~--~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~---- 304 (986)
T 2iw3_A 239 TFVAEVTPAT-LS-----IMVPLLSRGLNER--ETGIKRKS--AVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFA---- 304 (986)
T ss_dssp CCCSCCCHHH-HH-----HHHHHHHHHHTSS--SHHHHHHH--HHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTT----
T ss_pred eeEeeecchh-HH-----HHHHHHHhhhccC--cchhheee--EEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhh----
Confidence 432 1111 11 222222 122332 22223433 223556777888888999999888888776665
Q ss_pred CCCChHHHHHHHHHHHHHHHHhcccccc---------chhhHHHHHHHHhcC
Q 000134 509 HAEDLSLQKQALKRIEILIEMIGSHLTT---------YVPKILVLLMHAINK 551 (2096)
Q Consensus 509 ~~~~~~~k~~~l~sl~~li~l~g~~v~~---------~~pqI~a~L~~aL~~ 551 (2096)
...+.+.|.-+-+++..|.+..+..... -.-.+.+++...|..
T Consensus 305 ~~~~pe~r~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (986)
T 2iw3_A 305 TIADPEAREVTLRALKTLRRVGNVGEDDAIPELSHAGDVSTTLQVVNELLKD 356 (986)
T ss_dssp TCCSHHHHHHHHHHHHHHHHHHTCBTTTBCCCCCCTTCHHHHHHHHHHHTTT
T ss_pred ccCCHHHHHHHHHHHHHHHHhhccccccccccccccchHHHHHHHHHHHhcc
Confidence 3356778888899999999987652221 234567778888754
No 245
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=78.56 E-value=11 Score=35.68 Aligned_cols=70 Identities=19% Similarity=0.171 Sum_probs=53.1
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhchhHHH-HHHHHHHHHHH
Q 000134 1385 MEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAK-TLLLYSRWIHY 1463 (2096)
Q Consensus 1385 iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Ak-a~LllakWl~~ 1463 (2096)
++.|..+...|+..+|+..++++++..|. .+. ++..+|.-...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~------------------------------------~~~~~~~~lg~~~~~ 47 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPV------------------------------------GKDEAYYLMGNAYRK 47 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSS------------------------------------THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC------------------------------------cHHHHHHHHHHHHHH
Confidence 57788999999999999999998763210 023 56666666655
Q ss_pred hCCCCHHHHHHHHHHHHHhccchHHHHHH
Q 000134 1464 TGQKQKEDVITLYSRVRELQPMWEKGYFY 1492 (2096)
Q Consensus 1464 ~~~~~~~~i~~~Y~~a~~l~~~weK~~~~ 1492 (2096)
.|+ .++.++.|+++++++|....+|+.
T Consensus 48 ~~~--~~~A~~~~~~al~~~p~~~~~~~~ 74 (99)
T 2kc7_A 48 LGD--WQKALNNYQSAIELNPDSPALQAR 74 (99)
T ss_dssp HTC--HHHHHHHHHHHHHHCTTSTHHHHH
T ss_pred cCC--HHHHHHHHHHHHhcCCCcHHHHHH
Confidence 554 788999999999999998887743
No 246
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=78.31 E-value=2e+02 Score=40.23 Aligned_cols=284 Identities=11% Similarity=0.148 Sum_probs=139.4
Q ss_pred CCCcchHHHHHHHHHHHhhhhcccccccccchhhhhhhhhhHHHHHH------hcCchHHHHHHHHHHhCCChHHHHHhh
Q 000134 292 NPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVR------LASRPIMVREFAEAAFGVETEELVKKM 365 (2096)
Q Consensus 292 ~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~------l~~rp~~~~~~~e~llg~~~~~fL~~~ 365 (2096)
+.++.+|-.|...+.+..++++.. +-..-+..+|+.|..++..- +...|..+..+|.. .-.+.+..
T Consensus 72 s~~~~vR~fAa~~L~~~I~~~W~~---L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~-----La~I~k~~ 143 (1073)
T 3gjx_A 72 SQNMNTKYYGLQILENVIKTRWKI---LPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMI-----LVQILKQE 143 (1073)
T ss_dssp CCSHHHHHHHHHHHHHHHHHTGGG---SCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHH-----HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhh---CCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHH-----HHHHHHHh
Confidence 357899999999999988888763 43445556787888777652 12234455666651 22333333
Q ss_pred cc----cccchhhhccccChh----HHHHHHHHHHHcC------------CCchhHHhhhHHHHHHHHhc----cccHHH
Q 000134 366 IP----AVLPKLVVSQQDNDQ----AVNIINELAKCLN------------TDMVPLIVTWIPKVLAFALH----QADERR 421 (2096)
Q Consensus 366 ~~----~~LP~LVl~~~~~~~----~~~~i~~ia~~~~------------~~~~~l~~~~~~~Ila~ll~----~~~~~~ 421 (2096)
-| ..+|.|+-.-+.+.. ...++..|.+.+. ..+...+.++++.|+..+.. ...++-
T Consensus 144 ~P~~Wp~fi~dLv~~~~~~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~l 223 (1073)
T 3gjx_A 144 WPKHWPTFISDIVGASRTSESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPL 223 (1073)
T ss_dssp TTTTCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHH
T ss_pred ChhhccHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHH
Confidence 22 233344432221111 1234444444422 12355666788888876541 223444
Q ss_pred HHHHHHHHhhhcC-CChHHHHHHhhHHHHHHHH-HhhcCCCchhHhhhhcchhHHHHHHhhhccCCCChhhhhHHHHHHH
Q 000134 422 LLSALEFYCIQTG-SDNQEIFAAALPALLDELI-CFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGL 499 (2096)
Q Consensus 422 ~~~~l~~~~~~~~-~~~~~~~~~~~~~~l~eLl-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGi 499 (2096)
+..+|.-+..... ++...++... ++.-|+ .++ +++ +. +. ...+.+..+... ..+...+.+..=|-++
T Consensus 224 v~~~L~~L~~~~sWI~i~~i~~~~---ll~~L~~~~L--~~~-~~--r~-aA~dcL~eIv~k--~~~~~~~~~~~lf~~~ 292 (1073)
T 3gjx_A 224 VHATLETLLRFLNWIPLGYIFETK---LISTLIYKFL--NVP-MF--RN-VSLKCLTEIAGV--SVSQYEEQFETLFTLT 292 (1073)
T ss_dssp HHHHHHHHHHHTTTSCTHHHHSSS---HHHHHHHHTS--SSH-HH--HH-HHHHHHHHHHHS--CSGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHhccch---HHHHHHHHhc--CCh-HH--HH-HHHHHHHHHHhc--cccchHHHHHHHHHHH
Confidence 4555555554433 3444444432 332221 123 221 21 11 123334333321 1122233333334455
Q ss_pred HHHhhhhhcCCCChHH--------HHHHHHHHHHHHHHhcc-cccc------chhhHHHHHH-----HHhcCCCcchhhh
Q 000134 500 LNSIDRKMLHAEDLSL--------QKQALKRIEILIEMIGS-HLTT------YVPKILVLLM-----HAINKESLQCEGL 559 (2096)
Q Consensus 500 l~~~~~~l~~~~~~~~--------k~~~l~sl~~li~l~g~-~v~~------~~pqI~a~L~-----~aL~~~~L~~~~l 559 (2096)
|+.+...+....++.. -...+..+..+.--+|. |... +++-+.+.|+ ++.+..++-..||
T Consensus 293 ~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf 372 (1073)
T 3gjx_A 293 MMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICL 372 (1073)
T ss_dssp HHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 5555332211111110 02345666666655554 4321 2233333332 2334455668899
Q ss_pred HHHHHHHHHhccCCC-----c----------------chhhHHHHHHHHhhhcccc
Q 000134 560 SVLHFFIEQLSRVSP-----S----------------STKHVISQVFAALIPFLER 594 (2096)
Q Consensus 560 ~~W~~fv~~L~~~~~-----~----------------~l~~ll~~i~~~lip~~~~ 594 (2096)
..|..|.+.|-...+ . ...++++.+...++.-+.+
T Consensus 373 ~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~ 428 (1073)
T 3gjx_A 373 EYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAK 428 (1073)
T ss_dssp HHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999998742111 1 1467888888888776653
No 247
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=77.98 E-value=21 Score=39.19 Aligned_cols=60 Identities=15% Similarity=0.127 Sum_probs=41.3
Q ss_pred hHHHHHHHhhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhh
Q 000134 147 FLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFL 218 (2096)
Q Consensus 147 ~~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~ 218 (2096)
..-+.+.++|- ..+..|+..++..|.++-. .+. +.-|..++.|++..||.++...+..+-
T Consensus 19 ~~~~~L~~~L~-~~~~~vR~~A~~~L~~~~~---~~~--------~~~L~~~l~~~~~~vr~~a~~aL~~~~ 78 (211)
T 3ltm_A 19 EKVEMYIKNLQ-DDSYYVRRAAAYALGKIGD---ERA--------VEPLIKALKDEDAWVRRAAADALGQIG 78 (211)
T ss_dssp GGHHHHHHHTT-CSSHHHHHHHHHHHHHHCC---GGG--------HHHHHHHTTCSCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHc-CCCHHHHHHHHHHHHHhCC---ccH--------HHHHHHHHcCCCHHHHHHHHHHHHhhC
Confidence 34455666665 5678899999999887633 121 112333458999999999999998853
No 248
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=77.65 E-value=2.8 Score=50.66 Aligned_cols=89 Identities=17% Similarity=0.199 Sum_probs=64.5
Q ss_pred HHHHhHhhcCHHHHHHHHHHHHccCCCch-----------------hhhhhHHHHHHhccChHHHHHHhhhhhccChhhh
Q 000134 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSV-----------------QRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYK 1182 (2096)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~-----------------~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~ 1182 (2096)
....+.+.|+|++|..+|+++++..|++. ..+.++-.|+..+|+|+..+.+.+..+...|+..
T Consensus 185 ~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~ 264 (338)
T 2if4_A 185 DGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNP 264 (338)
T ss_dssp HHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 44556788999999999999998888765 2456677788899999988887776665556544
Q ss_pred hhHhHHHHHHHHhcCChhhHHHhhccc
Q 000134 1183 KTWCMQGVQAAWRLGRWDLMDEYLSGA 1209 (2096)
Q Consensus 1183 ~~~~~~~vEAAWrlg~Wd~l~~~l~~~ 1209 (2096)
.-++ ....+...+|+|+.-.+++..+
T Consensus 265 ~a~~-~lg~a~~~~g~~~~A~~~l~~a 290 (338)
T 2if4_A 265 KALF-RRGKAKAELGQMDSARDDFRKA 290 (338)
T ss_dssp HHHH-HHHHHHHTTTCHHHHHHHHHHT
T ss_pred HHHH-HHHHHHHHcCCHHHHHHHHHHH
Confidence 3333 3345677889998877766554
No 249
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=77.18 E-value=1.9e+02 Score=37.90 Aligned_cols=241 Identities=16% Similarity=0.222 Sum_probs=127.2
Q ss_pred HHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccchhhhhhhhhhHHHHHHhcCchHHHHHHHHHHhCCChHHHH
Q 000134 283 LILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELV 362 (2096)
Q Consensus 283 l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~rp~~~~~~~e~llg~~~~~fL 362 (2096)
+-+|++.|...+-.+|..|.+.+..+|..... -+-+.+.+.|.-+..+.. +|. +.+|-+
T Consensus 124 i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~-------------------~~Q~~Il~~p~gi~~Lv~-lL~-d~rE~i 182 (651)
T 3grl_A 124 VTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGP-------------------QVQQIILVSPMGVSRLMD-LLA-DSREVI 182 (651)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHH-------------------HHHHHHHHSTTHHHHHHG-GGG-CSSHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHHhcCcH-------------------HHHHHHHhCcccHHHHHH-HHh-CchHHH
Confidence 45688999999999999999999888666522 012223345555555542 554 334444
Q ss_pred HhhcccccchhhhccccChhHHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhcc---ccHHHHHHHHHHHhhhcCCC--h
Q 000134 363 KKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQ---ADERRLLSALEFYCIQTGSD--N 437 (2096)
Q Consensus 363 ~~~~~~~LP~LVl~~~~~~~~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~---~~~~~~~~~l~~~~~~~~~~--~ 437 (2096)
+----.+|+.|+... ..|++|-. +.+-|+.++..+-.. +...-+..||..+.+-...+ .
T Consensus 183 RneallLL~~Lt~~n-------~~iQklVA---------FEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sN 246 (651)
T 3grl_A 183 RNDGVLLLQALTRSN-------GAIQKIVA---------FENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSN 246 (651)
T ss_dssp HHHHHHHHHHHHTTC-------HHHHHHHH---------HTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhcCC-------HHHHHHHH---------HhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHH
Confidence 444334445554332 12333322 123455555433321 12355678888877776555 6
Q ss_pred HHHHHH--hhHHHHHHHHHhhcCCCchhH---hhhhcchhHHHHHHhhhccCCCCh-------hhhhHHHHHHHHHHhhh
Q 000134 438 QEIFAA--ALPALLDELICFVDGGDSDEI---NERLNRVPRVIRKVSTVLTGNEDL-------PGFLRNHFVGLLNSIDR 505 (2096)
Q Consensus 438 ~~~~~~--~~~~~l~eLl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-------~~fl~~~~LGil~~~~~ 505 (2096)
|..|++ .+|.+. -| +..++ +++ .++.+.+.-+++-+.-.+.++..+ ..|.+..++..+-.+-
T Consensus 247 Q~~FrEt~~i~~L~-~L---L~~~~-~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll- 320 (651)
T 3grl_A 247 QNFFKEGSYIQRMK-PW---FEVGD-ENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTIL- 320 (651)
T ss_dssp HHHHHHTTCGGGGG-GG---GCCCS-CSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHH-
T ss_pred HHHHHHcCCHHHHH-HH---hCCCc-cccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHH-
Confidence 888884 344443 22 22111 111 122223223444433333443332 2444444555444432
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHH---h----cc-ccc--cchhhHHHHHHHHhcC---CCcchhhhHHHHHHHH
Q 000134 506 KMLHAEDLSLQKQALKRIEILIEM---I----GS-HLT--TYVPKILVLLMHAINK---ESLQCEGLSVLHFFIE 567 (2096)
Q Consensus 506 ~l~~~~~~~~k~~~l~sl~~li~l---~----g~-~v~--~~~pqI~a~L~~aL~~---~~L~~~~l~~W~~fv~ 567 (2096)
+...-+...|..+|+.++++|+= . .. .|. ..+|-|...|.+.+.. .++|..++.|..+|+.
T Consensus 321 -~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~ 394 (651)
T 3grl_A 321 -MATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLY 394 (651)
T ss_dssp -TCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHT
T ss_pred -ccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHh
Confidence 11222567888999999999862 1 11 121 2457788888877643 2456666666666654
No 250
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=77.09 E-value=14 Score=37.11 Aligned_cols=105 Identities=10% Similarity=0.054 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CC----ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccc
Q 000134 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQAS----GA----PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGST 1419 (2096)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~all~a~~~----~~----~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~ 1419 (2096)
.+..+...+.+....|+++.|...+.+|... ++ ..+....|.+++..|+..+|+..+++++...+
T Consensus 48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------- 120 (164)
T 3ro3_A 48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ------- 120 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-------
Confidence 3567888899999999999999988877543 22 23566788999999999999999999875210
Q ss_pred ccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Q 000134 1420 AISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQP 1484 (2096)
Q Consensus 1420 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~ 1484 (2096)
........+.++..+|.-....|+ .++..+.|.++.++..
T Consensus 121 -----------------------~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 121 -----------------------ELKDRIGEGRACWSLGNAYTALGN--HDQAMHFAEKHLEISR 160 (164)
T ss_dssp -----------------------HTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHT
T ss_pred -----------------------HccchHhHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHH
Confidence 000122446677777777666665 6777777887777654
No 251
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=77.07 E-value=2.3e+02 Score=38.87 Aligned_cols=128 Identities=12% Similarity=0.175 Sum_probs=74.8
Q ss_pred HHHHhhHHHHHHHHHhhcCCC-chhHhhhhcchhHHHHHHhhhccCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHH
Q 000134 440 IFAAALPALLDELICFVDGGD-SDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQ 518 (2096)
Q Consensus 440 ~~~~~~~~~l~eLl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~ 518 (2096)
.+...++.++..|+..+.... ..+.......+..++..+.... .+.+..|+.+=+--++..+....-++++......
T Consensus 541 ~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~--~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~ 618 (960)
T 1wa5_C 541 DISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTS--EDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHY 618 (960)
T ss_dssp GTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHH--TTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHH--HHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 345566777777765555431 0000001112455555544333 2444455443222222333322223445555567
Q ss_pred HHHHHHHHHHHhcc-ccccchhhHHHHHHHHhcC--CCcchhhhHHHHHHHHHh
Q 000134 519 ALKRIEILIEMIGS-HLTTYVPKILVLLMHAINK--ESLQCEGLSVLHFFIEQL 569 (2096)
Q Consensus 519 ~l~sl~~li~l~g~-~v~~~~pqI~a~L~~aL~~--~~L~~~~l~~W~~fv~~L 569 (2096)
++.+|+.+++..|+ .+..+.+.+|-.+...|+. .++...++..|..++...
T Consensus 619 ~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~ 672 (960)
T 1wa5_C 619 TFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS 672 (960)
T ss_dssp HHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc
Confidence 88999999988665 5677788888888888864 478888999999998875
No 252
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=77.05 E-value=14 Score=44.25 Aligned_cols=136 Identities=8% Similarity=-0.014 Sum_probs=93.8
Q ss_pred HHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHh-c-c---CChhH---HHHHhHhhcCH
Q 000134 1059 SLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLH-K-S---LSLQD---ELLSNKKSGNW 1130 (2096)
Q Consensus 1059 AL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~-~-~---~sl~~---qil~~E~~G~W 1130 (2096)
|+-++|..+.... .....+..|..||...+++|........- . . .+++- .+..+-+.||-
T Consensus 85 a~~~l~~l~~~~~------------~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~ 152 (310)
T 3mv2_B 85 NIEELENLLKDKQ------------NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNV 152 (310)
T ss_dssp CCHHHHHTTTTSC------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhcCC------------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCH
Confidence 6778887654311 01233468999999999999988876532 1 1 12222 34457899999
Q ss_pred HHHHHHHHHHHccCC------Cchhhhh--hHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChhhH
Q 000134 1131 AEVFTSCEQALQMEP------TSVQRHS--DVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLM 1202 (2096)
Q Consensus 1131 ~~A~~~YE~~Lq~~p------~~~~~~~--glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd~l 1202 (2096)
+.|...++...+..| +++-.++ +|+....+-++++......+.+....|+|......+. +.+++|+|+..
T Consensus 153 d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln--~~~~~g~~~eA 230 (310)
T 3mv2_B 153 STASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN--LHLQQRNIAEA 230 (310)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH--HHHHHTCHHHH
T ss_pred HHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH--HHHHcCCHHHH
Confidence 999999998877888 3443332 5666666656888888877778778886544322233 89999999999
Q ss_pred HHhhcc
Q 000134 1203 DEYLSG 1208 (2096)
Q Consensus 1203 ~~~l~~ 1208 (2096)
++.+..
T Consensus 231 e~~L~~ 236 (310)
T 3mv2_B 231 QGIVEL 236 (310)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 253
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=76.75 E-value=1.6e+02 Score=36.71 Aligned_cols=137 Identities=9% Similarity=0.018 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHH----cCChHHHHHHHHHHhhcCCChHHHHHHHHHHHc-----CCchHHHHHHHHHhhcCCccccccc
Q 000134 1349 GNCWLQYAKLCRL----AGHYETATRAILEAQASGAPNVHMEKAKLLWST-----RRSDGAIAELQQNLLNKPVEVVGST 1419 (2096)
Q Consensus 1349 ~~~WL~~AklARK----ag~~~~A~~all~a~~~~~~~~~iE~AKLLW~~-----g~~~~Ai~~L~~~i~~~~~~~~~~~ 1419 (2096)
...+...+.+-.+ .+.++.|...+.+|...+.+.+...-+.++... ++..+|+..++++++..
T Consensus 255 ~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~-------- 326 (490)
T 2xm6_A 255 SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG-------- 326 (490)
T ss_dssp HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT--------
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC--------
Confidence 3456666777777 788888888888888888888888888888887 78889999888876420
Q ss_pred ccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccchHHHHHHHHhhhH
Q 000134 1420 AISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTG-QKQKEDVITLYSRVRELQPMWEKGYFYMAKYCD 1498 (2096)
Q Consensus 1420 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~-~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d 1498 (2096)
.+.++..+|......| ..+.+..++.|++|.+. ....+++.+|..|.
T Consensus 327 ------------------------------~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~ 374 (490)
T 2xm6_A 327 ------------------------------DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALL 374 (490)
T ss_dssp ------------------------------CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred ------------------------------CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence 0235566666555443 12467788889988887 34678999998874
Q ss_pred HHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcch
Q 000134 1499 DVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNL 1543 (2096)
Q Consensus 1499 ~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~~ 1543 (2096)
.- .|.. .-...++..|-+++..|+...
T Consensus 375 ~g-------------~g~~-----~~~~~A~~~~~~A~~~~~~~a 401 (490)
T 2xm6_A 375 QG-------------KGVK-----KDEQQAAIWMRKAAEQGLSAA 401 (490)
T ss_dssp HT-------------SSSC-----CCHHHHHHHHHHHHHTTCHHH
T ss_pred cC-------------CCCC-----CCHHHHHHHHHHHHhCCCHHH
Confidence 21 0000 113468889999988886543
No 254
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=76.58 E-value=21 Score=41.83 Aligned_cols=107 Identities=14% Similarity=0.052 Sum_probs=77.0
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CCC----hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccc
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQAS----GAP----NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGS 1418 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~----~~~----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~ 1418 (2096)
..+.+|...+.+.++.|+++.|...+.+|..+ +.+ .+...-+.++.. |+..+|+..+++++.-.+.
T Consensus 74 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~----- 147 (307)
T 2ifu_A 74 HAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFEN----- 147 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHh-----
Confidence 44567788888888999999998888877544 333 245566777877 9999999999998762110
Q ss_pred cccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccch
Q 000134 1419 TAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMW 1486 (2096)
Q Consensus 1419 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~w 1486 (2096)
.......+.++..+|......|+ .++.+..|.+++++.+..
T Consensus 148 -------------------------~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~~~~ 188 (307)
T 2ifu_A 148 -------------------------EERLRQAAELIGKASRLLVRQQK--FDEAAASLQKEKSMYKEM 188 (307)
T ss_dssp -------------------------TTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHT
T ss_pred -------------------------CCChhHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHc
Confidence 00112446778888887776665 888999999999987643
No 255
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=75.43 E-value=12 Score=40.04 Aligned_cols=108 Identities=18% Similarity=0.189 Sum_probs=77.2
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----C-CC----hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccc
Q 000134 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQAS----G-AP----NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVV 1416 (2096)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~all~a~~~----~-~~----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~ 1416 (2096)
...+.+|...+.+.+..|+++.|...+.+|... + .+ .+....+.+++..|+..+|+..+++++...+
T Consensus 63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~---- 138 (203)
T 3gw4_A 63 TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ---- 138 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH----
Confidence 355678899999999999999999988887654 3 22 2466778999999999999999999875200
Q ss_pred cccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Q 000134 1417 GSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM 1485 (2096)
Q Consensus 1417 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~ 1485 (2096)
........+.++..+|......|+ .++..+.|.+|.++...
T Consensus 139 --------------------------~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 139 --------------------------QADDQVAIACAFRGLGDLAQQEKN--LLEAQQHWLRARDIFAE 179 (203)
T ss_dssp --------------------------HTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHH
T ss_pred --------------------------hccchHHHHHHHHHHHHHHHHCcC--HHHHHHHHHHHHHHHHH
Confidence 000112346667777776666664 67777888887776543
No 256
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=71.91 E-value=10 Score=37.11 Aligned_cols=63 Identities=13% Similarity=0.004 Sum_probs=55.7
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
.....|...+.+..+.|.++.|...+.+|....+ +.+....|.++...|+..+|+..+++++.
T Consensus 17 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 17 DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3467899999999999999999999999987754 45788899999999999999999999875
No 257
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=71.84 E-value=26 Score=42.21 Aligned_cols=121 Identities=15% Similarity=0.077 Sum_probs=90.1
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CC-----ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccc
Q 000134 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQAS----GA-----PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVV 1416 (2096)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~all~a~~~----~~-----~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~ 1416 (2096)
...+..+...|.+....|.++.|.....+|... +. ..+...-|..+...|+..+|+..++++++-.+
T Consensus 138 ~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~---- 213 (378)
T 3q15_A 138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAM---- 213 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH----
Confidence 356778889999999999999999988887654 22 12445678889999999999999999875210
Q ss_pred cccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----hccchHHHHH
Q 000134 1417 GSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRE-----LQPMWEKGYF 1491 (2096)
Q Consensus 1417 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~-----l~~~weK~~~ 1491 (2096)
........+.++.-+|.-....|+ .++.+..|++|++ -+|....+++
T Consensus 214 --------------------------~~~~~~~~~~~~~~lg~~y~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 214 --------------------------DIQNDRFIAISLLNIANSYDRSGD--DQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp --------------------------HTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred --------------------------HcCCHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 001123457777788877666665 7889999999998 6666777888
Q ss_pred HHHhhhH
Q 000134 1492 YMAKYCD 1498 (2096)
Q Consensus 1492 ~la~y~d 1498 (2096)
.+|..|.
T Consensus 266 ~la~~~~ 272 (378)
T 3q15_A 266 GLSWTLC 272 (378)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887764
No 258
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=71.25 E-value=2.1e+02 Score=35.68 Aligned_cols=144 Identities=14% Similarity=0.113 Sum_probs=87.8
Q ss_pred HHHhhcccCccchhhHHHHHHHHHHccCCch--hhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccC
Q 000134 152 YFEFLYDESSEEVQLSCVRVIRRILVHGTRD--VLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLD 229 (2096)
Q Consensus 152 ~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~--~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~ 229 (2096)
+-++|-. .+.++|......|+++..|.... ...+. .-+.-+-.+|.+++..++..++.++..+. .+
T Consensus 7 lv~~L~s-~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~--g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa---------~~ 74 (457)
T 1xm9_A 7 AVQYLSS-QDEKYQAIGAYYIQHTCFQDESAKQQVYQL--GGICKLVDLLRSPNQNVQQAAAGALRNLV---------FR 74 (457)
T ss_dssp HHHHHHS-SCTHHHHHHHHHHHHHTSSCSSHHHHHHHT--THHHHHHHHTTSSCHHHHHHHHHHHHHHH---------SS
T ss_pred HHHHHCC-CCHHHHHHHHHHHHHHHcCChHHHHHHHHc--CCHHHHHHHHcCCCHHHHHHHHHHHHHHh---------cC
Confidence 3445544 46789999999999999776532 22222 12333344558999999999999999864 11
Q ss_pred cccccchhhHHH-----HHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhh--------CCCC--
Q 000134 230 ENASSRSNELKL-----LDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQL--------DNPH-- 294 (2096)
Q Consensus 230 ~~~~~~~~~~~~-----~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L--------~~~n-- 294 (2096)
+ ..++..+ +..+-+.+....|+.++|-..-+++.|......+..+..-++=.|+..| +.++
T Consensus 75 ~----~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~ 150 (457)
T 1xm9_A 75 S----TTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNM 150 (457)
T ss_dssp C----HHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC------
T ss_pred C----HHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccch
Confidence 1 1122222 3344454554668899999999999986542222334443444578888 3332
Q ss_pred ------cchHHHHHHHHHHHhhh
Q 000134 295 ------VTVRMNASRLIRKSCFF 311 (2096)
Q Consensus 295 ------~~v~~~A~~~i~~l~~~ 311 (2096)
+.+.-.|..-+.++|..
T Consensus 151 ~~e~~~~~v~~~a~~aL~nLs~~ 173 (457)
T 1xm9_A 151 SREVVDPEVFFNATGCLRNLSSA 173 (457)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTS
T ss_pred hcccccHHHHHHHHHHHHHHccC
Confidence 33444888888888764
No 259
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=69.41 E-value=22 Score=42.02 Aligned_cols=65 Identities=20% Similarity=0.103 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC-C----hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCc
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGA-P----NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPV 1413 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~~-~----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~ 1413 (2096)
...++..+.++...|+++.|...+.++...+. | .+.+..+-.|.+.|+.++|...+++.+...|.
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 34677889999999999999999999975442 3 47789999999999999999999999876553
No 260
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=68.62 E-value=2.3e+02 Score=35.09 Aligned_cols=135 Identities=12% Similarity=0.078 Sum_probs=98.4
Q ss_pred hHHHHHHHHHHHHHc----CChHHHHHHHHHHhhcCCChHHHHHHHH-H--HHcCCchHHHHHHHHHhhcCCcccccccc
Q 000134 1348 VGNCWLQYAKLCRLA----GHYETATRAILEAQASGAPNVHMEKAKL-L--WSTRRSDGAIAELQQNLLNKPVEVVGSTA 1420 (2096)
Q Consensus 1348 ~~~~WL~~AklARKa----g~~~~A~~all~a~~~~~~~~~iE~AKL-L--W~~g~~~~Ai~~L~~~i~~~~~~~~~~~~ 1420 (2096)
.+..|...+.+.... +.++.|.....+|. .+.+.+...-+.+ + ...|+..+|+..++++.+. |
T Consensus 212 ~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~------g--- 281 (452)
T 3e4b_A 212 TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA------D--- 281 (452)
T ss_dssp CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT------T---
T ss_pred HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC------C---
Confidence 345556677776655 68899999999988 7888999999988 4 5788899999999987641 0
Q ss_pred cccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhccchHHHHHHHHhhh
Q 000134 1421 ISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTG---QKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497 (2096)
Q Consensus 1421 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~---~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~ 1497 (2096)
.+.++..+|.... .| ..+.+..++.|++|. +....+++.+|..|
T Consensus 282 -----------------------------~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y 328 (452)
T 3e4b_A 282 -----------------------------QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIY 328 (452)
T ss_dssp -----------------------------CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHH
T ss_pred -----------------------------CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHH
Confidence 1446777777665 44 346888999999988 67788999999877
Q ss_pred HHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcch
Q 000134 1498 DDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNL 1543 (2096)
Q Consensus 1498 d~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~~ 1543 (2096)
..= .|.. .-...++..|-+++..|+...
T Consensus 329 ~~G-------------~g~~-----~d~~~A~~~~~~Aa~~g~~~A 356 (452)
T 3e4b_A 329 RRG-------------YLGK-----VYPQKALDHLLTAARNGQNSA 356 (452)
T ss_dssp HTT-------------TTSS-----CCHHHHHHHHHHHHTTTCTTH
T ss_pred HCC-------------CCCC-----cCHHHHHHHHHHHHhhChHHH
Confidence 420 0100 123468999999999887643
No 261
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=66.81 E-value=17 Score=37.17 Aligned_cols=112 Identities=13% Similarity=0.088 Sum_probs=72.1
Q ss_pred HHHhhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcc
Q 000134 152 YFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDEN 231 (2096)
Q Consensus 152 ~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~ 231 (2096)
+.++| +..+.+|+.+.+..|.++ +... +.-|..+|.|++..||.+++..+..+-.
T Consensus 17 l~~~L-~~~~~~vR~~A~~~L~~~---~~~~---------~~~L~~~L~d~~~~vR~~A~~aL~~~~~------------ 71 (131)
T 1te4_A 17 RGSHM-ADENKWVRRDVSTALSRM---GDEA---------FEPLLESLSNEDWRIRGAAAWIIGNFQD------------ 71 (131)
T ss_dssp ----C-CSSCCCSSSSCCSSTTSC---SSTT---------HHHHHHGGGCSCHHHHHHHHHHHGGGCS------------
T ss_pred HHHHh-cCCCHHHHHHHHHHHHHh---CchH---------HHHHHHHHcCCCHHHHHHHHHHHHhcCC------------
Confidence 33444 345667777776666543 2211 1233445699999999999998877320
Q ss_pred cccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCcchHHHHHHHH
Q 000134 232 ASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLI 305 (2096)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i 305 (2096)
...+..+...+. -+|+.|....+.++|.++... ++-.|++.|..+++.||..|..-|
T Consensus 72 -------~~a~~~L~~~L~-d~~~~VR~~A~~aL~~~~~~~---------a~~~L~~~l~d~~~~vr~~A~~aL 128 (131)
T 1te4_A 72 -------ERAVEPLIKLLE-DDSGFVRSGAARSLEQIGGER---------VRAAMEKLAETGTGFARKVAVNYL 128 (131)
T ss_dssp -------HHHHHHHHHHHH-HCCTHHHHHHHHHHHHHCSHH---------HHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred -------HHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCcHH---------HHHHHHHHHhCCCHHHHHHHHHHH
Confidence 123444555443 468889999999999984322 445677888899999998887654
No 262
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=66.30 E-value=3.9e+02 Score=36.93 Aligned_cols=56 Identities=13% Similarity=0.168 Sum_probs=45.0
Q ss_pred HHHHHHHHhhh--hhcCCCChHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHhcC
Q 000134 495 HFVGLLNSIDR--KMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINK 551 (2096)
Q Consensus 495 ~~LGil~~~~~--~l~~~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL~~ 551 (2096)
++-.+|+.|-+ .+.++ ....+.+|-.++..+++-+++++.++.+.|+..|+..|..
T Consensus 532 ~l~~~L~~ll~~~gl~~~-~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~ 589 (980)
T 3ibv_A 532 AIPALIEYFVGPRGIHNT-NERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNI 589 (980)
T ss_dssp THHHHHHHHTSTTTTTCC-CTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCC
T ss_pred hHHHHHHHHhccccccCC-ChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcC
Confidence 35677777766 55443 3446789999999999999999999999999999988874
No 263
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=66.23 E-value=26 Score=41.39 Aligned_cols=124 Identities=9% Similarity=-0.016 Sum_probs=75.3
Q ss_pred HhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccC-hhhhhhHhHHHHHHHHhcCChhh
Q 000134 1123 SNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRI-PQYKKTWCMQGVQAAWRLGRWDL 1201 (2096)
Q Consensus 1123 ~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~-p~~~~~~~~~~vEAAWrlg~Wd~ 1201 (2096)
.+-..|++++|...|+..+...|+++ .+..+-..+.+.++|+.++.+.+...... |........+.-.|.-.+|+++.
T Consensus 111 ~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~e 189 (282)
T 4f3v_A 111 CEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTE 189 (282)
T ss_dssp HHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHH
Confidence 45678999999999998888888777 54433345667899998888877543321 11112233344456778999988
Q ss_pred HHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHH
Q 000134 1202 MDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSK 1252 (2096)
Q Consensus 1202 l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR 1252 (2096)
-.+++..... | ..++....+..+.+++.-...++.++..+.+++++
T Consensus 190 Al~~l~~a~~-g----~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 190 AERRLTEAND-S----PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp HHHHHHHHHT-S----TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-C----CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8887776532 1 11122133344555555555666665555554433
No 264
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.36 E-value=1.8e+02 Score=34.99 Aligned_cols=162 Identities=10% Similarity=0.102 Sum_probs=99.7
Q ss_pred HHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCC------hhhHHHHHHHHhcCCChHHHHHHHHH----hccCC
Q 000134 1047 ARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFE------DEDVSFLMEIYSFLDEPDGLSGLARL----HKSLS 1116 (2096)
Q Consensus 1047 A~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~------~~~~~~L~~IYa~LdEpDgl~Gi~~~----~~~~s 1116 (2096)
|+...+-|.|..|+-++..-+...+...+.. ...+... ...+..|.++|...+++|.+...... +...+
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAA-AGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBS-SSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhH-HHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 6778889999999999988776543321110 0001100 12367899999999999988876432 11111
Q ss_pred hh------HH--HHHhHhhcCHHHHHHHHHHHHccCC------CchhhhhhHHHHHHhccChHHHHHHhhhhhcc---Ch
Q 000134 1117 LQ------DE--LLSNKKSGNWAEVFTSCEQALQMEP------TSVQRHSDVLNCLLNMCHLQAMVTHVDGLISR---IP 1179 (2096)
Q Consensus 1117 l~------~q--il~~E~~G~W~~A~~~YE~~Lq~~p------~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~---~p 1179 (2096)
-. .. ...+...|+++.|..+|+.+++..+ ........+-+.+.+.|+|+..+.+.+.+... ..
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 00 11 1235678999999999999876322 12233456667788889999887776654321 11
Q ss_pred h--hhhhHhHHHHHHHHhcCChhhHHHhhccc
Q 000134 1180 Q--YKKTWCMQGVQAAWRLGRWDLMDEYLSGA 1209 (2096)
Q Consensus 1180 ~--~~~~~~~~~vEAAWrlg~Wd~l~~~l~~~ 1209 (2096)
+ ...+........-..+|+|+....++..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 201 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAA 201 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 1 11122333455667899999988876543
No 265
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=65.16 E-value=57 Score=37.65 Aligned_cols=115 Identities=10% Similarity=-0.019 Sum_probs=78.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC----CC----hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000134 1353 LQYAKLCRLAGHYETATRAILEAQASG----AP----NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2096)
Q Consensus 1353 L~~AklARKag~~~~A~~all~a~~~~----~~----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~ 1424 (2096)
...+.+....|.++.|...+.+|.... ++ .+...-+.++...|+.++|+..++++++-...
T Consensus 119 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~----------- 187 (293)
T 2qfc_A 119 YYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEA----------- 187 (293)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-----------
Confidence 345666778899999999988886542 22 25556788999999999999999998741000
Q ss_pred cccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc------hHHHHHHHHhhhH
Q 000134 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM------WEKGYFYMAKYCD 1498 (2096)
Q Consensus 1425 ~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~------weK~~~~la~y~d 1498 (2096)
.+. .....+.++.-+|......|+ .+++++.|++|+++.+. ...+|+.+|..|.
T Consensus 188 -----~~~-------------~~~~~~~~~~nlg~~y~~~~~--y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~ 247 (293)
T 2qfc_A 188 -----LHD-------------NEEFDVKVRYNHAKALYLDSR--YEESLYQVNKAIEISCRINSMALIGQLYYQRGECLR 247 (293)
T ss_dssp -----SCC-------------CHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHH
T ss_pred -----cCc-------------cccchHHHHHhHHHHHHHHhh--HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 000 011223567777776665554 78899999999988654 2566777777764
No 266
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=63.42 E-value=22 Score=38.11 Aligned_cols=87 Identities=10% Similarity=0.143 Sum_probs=60.9
Q ss_pred CCChHHHHHHHHHHHcCCc------hHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhchhHHH
Q 000134 1379 GAPNVHMEKAKLLWSTRRS------DGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAK 1452 (2096)
Q Consensus 1379 ~~~~~~iE~AKLLW~~g~~------~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Ak 1452 (2096)
++|+.-..+++++=+.|+. .+-+...++++.++|.+ + ....+-.+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~---------------------------k-~~~wrrYI~ 62 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPD---------------------------K-YGQNESFAR 62 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGG---------------------------G-GTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCcc---------------------------c-cccHHHHHH
Confidence 3455555556666655665 44455666666654421 1 224566788
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhh
Q 000134 1453 TLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKY 1496 (2096)
Q Consensus 1453 a~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y 1496 (2096)
....||.|.. . .+.+.....|+.+.++|.+..|.|..+|+|
T Consensus 63 LWIrYA~~~e-i--~D~d~aR~vy~~a~~~hKkFAKiwi~~AqF 103 (161)
T 4h7y_A 63 IQVRFAELKA-I--QEPDDARDYFQMARANCKKFAFVHISFAQF 103 (161)
T ss_dssp HHHHHHHHHH-H--HCGGGCHHHHHHHHHHCTTBHHHHHHHHHH
T ss_pred HHHHHHHHHH-h--cCHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999953 3 467888999999999999999999999987
No 267
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=63.15 E-value=90 Score=36.10 Aligned_cols=152 Identities=16% Similarity=0.150 Sum_probs=89.0
Q ss_pred hhhHHHHHHHhhcccCccchhhHHHHHHHHHHccCCchhhhhh-----hhHHH-HHHHHHhhcccHHHHHHHHHHHhHhh
Q 000134 145 FSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKT-----RSEWI-KCIEFLLLNKRKAIRDAFCTQIGYFL 218 (2096)
Q Consensus 145 ~~~~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~-----~~~w~-~~~~~~~~~~~r~vR~a~~~~~~~~~ 218 (2096)
|..+-.++-+.+ .++---|+-..+.+|..++........... ...++ ..++..+.++...+|.++...+-.++
T Consensus 53 ~~~~~~~lkk~l-~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~ 131 (278)
T 4ffb_C 53 YWRDPTLFAQYI-TDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLC 131 (278)
T ss_dssp TTSCTHHHHHHT-TCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 333445455555 334444555677888888775442211111 11122 13444457889999999887777665
Q ss_pred hhhhhhhhccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhc---ccchhHHHHHH-HHHHhhCCCC
Q 000134 219 QDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVD---VHSQHFLFLLI-LLVEQLDNPH 294 (2096)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~---~~~e~~~~~l~-~Li~~L~~~n 294 (2096)
+... ....++..+.. ....++|.++..++..++++...-. ++...+.-.++ .|...|+++|
T Consensus 132 ~~~~--------------~~~~~~e~l~~-~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~ 196 (278)
T 4ffb_C 132 GLDT--------------SITQSVELVIP-FFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGD 196 (278)
T ss_dssp HTSS--------------SSHHHHHHHGG-GGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSS
T ss_pred HhcC--------------cHHHHHHHHHH-HHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCc
Confidence 1111 11334455554 3456899999999999998864321 11111111222 3777889999
Q ss_pred cchHHHHHHHHHHHhhhh
Q 000134 295 VTVRMNASRLIRKSCFFH 312 (2096)
Q Consensus 295 ~~v~~~A~~~i~~l~~~~ 312 (2096)
+-||..|.+.+..+.++.
T Consensus 197 ~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 197 RNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp HHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999984433
No 268
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=61.37 E-value=6.3 Score=42.63 Aligned_cols=43 Identities=9% Similarity=0.159 Sum_probs=38.4
Q ss_pred HhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChH
Q 000134 1123 SNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQ 1165 (2096)
Q Consensus 1123 ~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~ 1165 (2096)
..++.++|++|..+|+++++..|++.+....|=.||.++|+++
T Consensus 11 ~~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~ 53 (158)
T 1zu2_A 11 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFH 53 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccc
Confidence 4578899999999999999999999998887888999998875
No 269
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=61.09 E-value=54 Score=37.85 Aligned_cols=114 Identities=10% Similarity=0.005 Sum_probs=81.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhcC--CCh------HHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000134 1355 YAKLCRLAGHYETATRAILEAQASG--APN------VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2096)
Q Consensus 1355 ~AklARKag~~~~A~~all~a~~~~--~~~------~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~ 1426 (2096)
.+.+..+.|.++.|...+.+|.... .++ +..--+.++...|+..+|+..++++++....
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~------------- 187 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEA------------- 187 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-------------
Confidence 5666677789999999999887642 111 4556678889999999999999998752100
Q ss_pred cCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccch------HHHHHHHHhhhHH
Q 000134 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMW------EKGYFYMAKYCDD 1499 (2096)
Q Consensus 1427 ~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~w------eK~~~~la~y~d~ 1499 (2096)
........+.++.-+|......|+ .+++++.|.+|+++.+.. ..+|+.+|..|.+
T Consensus 188 ----------------~~~~~~~~~~~~~nlg~~y~~~~~--y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~ 248 (293)
T 3u3w_A 188 ----------------LHDNEEFDVKVRYNHAKALYLDSR--YEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRK 248 (293)
T ss_dssp ----------------SSCCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHH
T ss_pred ----------------cccchhHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 001223557788888887777665 788999999999887654 5677778777643
No 270
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=60.29 E-value=70 Score=32.75 Aligned_cols=120 Identities=10% Similarity=-0.018 Sum_probs=85.0
Q ss_pred ChHHHHHHHHHHhhcCCChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCccccccc
Q 000134 1364 HYETATRAILEAQASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQT 1443 (2096)
Q Consensus 1364 ~~~~A~~all~a~~~~~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 1443 (2096)
.++.|...+.+|...+++.+. -+.++...+...+|+..++++.+. |
T Consensus 10 d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~------g-------------------------- 55 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACEL------N-------------------------- 55 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHHT------T--------------------------
T ss_pred CHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHcC------C--------------------------
Confidence 356778888888888888877 777777777788899999987652 0
Q ss_pred chhchhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhhh
Q 000134 1444 LNEKRDIAKTLLLYSRWIHYT--GQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRW 1521 (2096)
Q Consensus 1444 ~~~~~~~Aka~LllakWl~~~--~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~~~~~~e~~~~~g~~~~~~ 1521 (2096)
.+.++..+|.....- ...+.+..++.|++|.+. ....+++.+|..|..= .|. .
T Consensus 56 ------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G-------------~g~-~--- 110 (138)
T 1klx_A 56 ------SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG-------------KGV-V--- 110 (138)
T ss_dssp ------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT-------------SSS-C---
T ss_pred ------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC-------------CCC-C---
Confidence 044667777665431 145688999999999887 4577899999887421 010 0
Q ss_pred hchHHHHHHHHHHhhccCCcch
Q 000134 1522 WFYVPDVLLFYAKGLHRGHKNL 1543 (2096)
Q Consensus 1522 ~~~l~~ai~~Y~~sl~~g~~~~ 1543 (2096)
.-...++..|-+++..|+...
T Consensus 111 -~d~~~A~~~~~~Aa~~g~~~A 131 (138)
T 1klx_A 111 -KNEKQAVKTFEKACRLGSEDA 131 (138)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHH
T ss_pred -cCHHHHHHHHHHHHHCCCHHH
Confidence 123468999999999987643
No 271
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=60.12 E-value=1.7e+02 Score=33.70 Aligned_cols=140 Identities=14% Similarity=0.133 Sum_probs=92.1
Q ss_pred HHHHHhhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHH---hhcccHHHHHHHHHHHhHhhhhhhhhhh
Q 000134 150 NIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFL---LLNKRKAIRDAFCTQIGYFLQDTVLSSL 226 (2096)
Q Consensus 150 ~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~---~~~~~r~vR~a~~~~~~~~~~~~~~~~~ 226 (2096)
.+.++|| .+..+.|+.-++.+|-.+++-...... +.+..+-++.+ +.++|+-|=.-|-+.+..++
T Consensus 36 ~~L~~LL-~dkD~~vk~raL~~LeellK~~~~~l~---~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LL-------- 103 (265)
T 3b2a_A 36 FLILELA-GEDDETTRLRAFVALGEILKRADSDLR---MMVLERHLDVFINALSQENEKVTIKALRALGYLV-------- 103 (265)
T ss_dssp HHHHHHT-TSSCHHHHHHHHHHHHHHHHHSCHHHH---HHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHH-hccchHHHHHHHHHHHHHHHhcccccc---HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH--------
Confidence 4456666 556678899999999999998543322 12222344444 48889888888888888877
Q ss_pred ccCcccccchhhHHHHHHHHHHhhh---cCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCcchHHHHHH
Q 000134 227 FLDENASSRSNELKLLDVIKLAFTA---ADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASR 303 (2096)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~ 303 (2096)
.+..-+ .+.+.++-+++.. -.++-+.|-..+.+|-+ + +....-...-.+.-|+ .+.|.-++++|.+
T Consensus 104 -e~vpL~-----~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-k-v~~~~~~V~~~l~sLl---~Skd~~vK~agl~ 172 (265)
T 3b2a_A 104 -KDVPMG-----SKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-Q-PLEDSKLVRTYINELV---VSPDLYTKVAGFC 172 (265)
T ss_dssp -TTCCBC-----HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-C-BSCCCHHHHHHHHHHH---TCSSHHHHHHHHH
T ss_pred -cCCCCC-----HHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-C-cccchHHHHHHHHHHH---hCCChhHHHHHHH
Confidence 322222 2335555555554 46666888888888886 3 3232333323333344 9999999999999
Q ss_pred HHHHHhhhh
Q 000134 304 LIRKSCFFH 312 (2096)
Q Consensus 304 ~i~~l~~~~ 312 (2096)
.+.+++.+.
T Consensus 173 ~L~eia~~S 181 (265)
T 3b2a_A 173 LFLNMLNSS 181 (265)
T ss_dssp HHHHHGGGC
T ss_pred HHHHhhccc
Confidence 999997654
No 272
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=60.07 E-value=1.3e+02 Score=37.76 Aligned_cols=52 Identities=8% Similarity=0.049 Sum_probs=33.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhcCCChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1354 QYAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1354 ~~AklARKag~~~~A~~all~a~~~~~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
+..++-||+|++......+...+..+...+.=..=.|+-..++.. .|+..|+
T Consensus 361 r~v~~~~~~~~l~l~~~yl~~v~~~n~~~vnealn~l~ieeed~~----~lr~si~ 412 (449)
T 1b89_A 361 RAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQ----ALRTSID 412 (449)
T ss_dssp HHHHHHHHTTCTTTTHHHHHHHHTTCCHHHHHHHHHHHHHTTCHH----HHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHH----HHHHHHH
Confidence 345667999999999988887776655544444446666666553 3555554
No 273
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=59.93 E-value=64 Score=37.76 Aligned_cols=70 Identities=14% Similarity=0.089 Sum_probs=52.6
Q ss_pred CCCCchhhhhhHHhhhccccCchHHHHHHHHHHHHHHHhchhhHHHHHH-HhhcCCChh-HHHHHHHHHHHH
Q 000134 1589 DLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMA-AVSKSTIPS-RREAAAEIIQAA 1658 (2096)
Q Consensus 1589 ~iP~~~wl~~lPQLisRl~h~~~~v~~~l~~il~kv~~~yPqq~lw~l~-~~~~S~~~~-R~~~~~~Il~~~ 1658 (2096)
.+..|.=-.++|.||.+++++...|++.+..++..+...||-+.+|..+ ...+|++.. |.+....+..-+
T Consensus 124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li 195 (266)
T 2of3_A 124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYI 195 (266)
T ss_dssp CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 4556666789999999999999999999999999999999999877665 455776643 344444444433
No 274
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=55.62 E-value=67 Score=31.23 Aligned_cols=88 Identities=15% Similarity=0.132 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHH
Q 000134 1382 NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWI 1461 (2096)
Q Consensus 1382 ~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl 1461 (2096)
.-.++-++.+..+|+..+|+.-++.+++..+.+ .. . ....+.++..+|.-.
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~------------------~~-~----------~~~~~~i~~~L~~~~ 56 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEG------------------EI-S----------TIDKVSVLDYLSYAV 56 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT------------------CC-C----------SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhcc------------------CC-C----------cccHHHHHHHHHHHH
Confidence 456788999999999999999999988632110 00 0 012245667777766
Q ss_pred HHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHH
Q 000134 1462 HYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVL 1501 (2096)
Q Consensus 1462 ~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~ 1501 (2096)
...|+ .+..+..|++|.++.|....+...++ |+++.+
T Consensus 57 ~~~g~--~~~A~~~~~~al~l~P~~~~~~~n~~-~~~~~~ 93 (104)
T 2v5f_A 57 YQQGD--LDKALLLTKKLLELDPEHQRANGNLK-YFEYIM 93 (104)
T ss_dssp HHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHH-HHHHHH
T ss_pred HHccC--HHHHHHHHHHHHhcCCCCHHHHhhHH-HHHHHH
Confidence 66664 78899999999999999988888887 777665
No 275
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=53.63 E-value=23 Score=34.64 Aligned_cols=59 Identities=14% Similarity=0.039 Sum_probs=43.9
Q ss_pred HhHhhcCHHHHHHHHHHHHccC-------CCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhh
Q 000134 1123 SNKKSGNWAEVFTSCEQALQME-------PTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQY 1181 (2096)
Q Consensus 1123 ~~E~~G~W~~A~~~YE~~Lq~~-------p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~ 1181 (2096)
.+-..|+|..|..||+.+++.. +...+....+-.|+.++|+++..+.+.+..+.-.|+.
T Consensus 14 ~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 14 VAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 3457899999999999998742 2334455667789999999998888877765555543
No 276
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=53.44 E-value=4e+02 Score=32.89 Aligned_cols=114 Identities=10% Similarity=0.061 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHcC---ChHHHHHHHHHHhhcCCChHHHHHHHHHHH----cCCchHHHHHHHHHhhcCCccccccccc
Q 000134 1349 GNCWLQYAKLCRLAG---HYETATRAILEAQASGAPNVHMEKAKLLWS----TRRSDGAIAELQQNLLNKPVEVVGSTAI 1421 (2096)
Q Consensus 1349 ~~~WL~~AklARKag---~~~~A~~all~a~~~~~~~~~iE~AKLLW~----~g~~~~Ai~~L~~~i~~~~~~~~~~~~~ 1421 (2096)
...|...+.+-.+.| .++.|...+.+|...+.+.+...-+.++.. .++..+|+..++++++..
T Consensus 328 ~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---------- 397 (490)
T 2xm6_A 328 ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---------- 397 (490)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC----------
Confidence 356777777777666 677788888888888888888888888888 788888888888875410
Q ss_pred ccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHHhc---cchHHHHHHHHhh
Q 000134 1422 SSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYT-G-QKQKEDVITLYSRVRELQ---PMWEKGYFYMAKY 1496 (2096)
Q Consensus 1422 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~-~-~~~~~~i~~~Y~~a~~l~---~~weK~~~~la~y 1496 (2096)
.+.++..+|.....- | ..+.++....|++|.+.. |....+++.+|..
T Consensus 398 ----------------------------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~ 449 (490)
T 2xm6_A 398 ----------------------------LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKL 449 (490)
T ss_dssp ----------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTS
T ss_pred ----------------------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhc
Confidence 033556666655431 1 456889999999999998 4578888888887
Q ss_pred hHHH
Q 000134 1497 CDDV 1500 (2096)
Q Consensus 1497 ~d~l 1500 (2096)
+.+-
T Consensus 450 ~~~~ 453 (490)
T 2xm6_A 450 TAKQ 453 (490)
T ss_dssp CHHH
T ss_pred CHhH
Confidence 6644
No 277
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=53.13 E-value=1.3e+02 Score=35.62 Aligned_cols=104 Identities=13% Similarity=0.005 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCh-------HHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccc
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGAPN-------VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAI 1421 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~~~~-------~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~ 1421 (2096)
+..++..+.++...|.++.|...+.+|....++. +....+.+++..|+..+|+..+++++.-.+.
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-------- 85 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ-------- 85 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHh--------
Confidence 4566778889999999999999988876653221 3445678899999999999999998752110
Q ss_pred ccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Q 000134 1422 SSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQP 1484 (2096)
Q Consensus 1422 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~ 1484 (2096)
.......+.++..+|......|+ .++....|.++.++.+
T Consensus 86 ----------------------~~~~~~~~~~~~~la~~~~~~G~--~~~A~~~~~~al~~~~ 124 (373)
T 1hz4_A 86 ----------------------HDVWHYALWSLIQQSEILFAQGF--LQTAWETQEKAFQLIN 124 (373)
T ss_dssp ----------------------TTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHH
T ss_pred ----------------------cCcHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHH
Confidence 00011234455666666555554 7888889998888763
No 278
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=52.20 E-value=3.6e+02 Score=31.91 Aligned_cols=225 Identities=11% Similarity=0.044 Sum_probs=117.9
Q ss_pred CHHHHHHHHHHHHccCCCchhhhhhHHHHHHhcc--ChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChhhHHHhh
Q 000134 1129 NWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMC--HLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMDEYL 1206 (2096)
Q Consensus 1129 ~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LG--q~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd~l~~~l 1206 (2096)
.-++|+.+++.+|+..|++.+.=...=+||..+| .++..+...+.++...|+...-|..- .|=. ....
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R---------~~iL-~~~~ 117 (306)
T 3dra_A 48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYR---------QLII-GQIM 117 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHH---------HHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHH---------HHHH-HHHH
Confidence 3368999999999999998876656667888999 89888888888877777654433322 2211 1110
Q ss_pred cccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHHHHhhhhhHHHHH
Q 000134 1207 SGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLHLLQELEDF 1286 (2096)
Q Consensus 1207 ~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~kLH~L~ELee~ 1286 (2096)
..... ...+...+. .+..+.+.+...+.. - .-|.-++..+.. |. .-.|++-+
T Consensus 118 ~~l~~----------~~~~~~EL~-~~~~~l~~~pkny~a-W-~~R~~vl~~l~~-----~~----------~~~EL~~~ 169 (306)
T 3dra_A 118 ELNNN----------DFDPYREFD-ILEAMLSSDPKNHHV-W-SYRKWLVDTFDL-----HN----------DAKELSFV 169 (306)
T ss_dssp HHTTT----------CCCTHHHHH-HHHHHHHHCTTCHHH-H-HHHHHHHHHTTC-----TT----------CHHHHHHH
T ss_pred Hhccc----------cCCHHHHHH-HHHHHHHhCCCCHHH-H-HHHHHHHHHhcc-----cC----------hHHHHHHH
Confidence 10000 001111111 111111122211111 0 112222222211 10 12455544
Q ss_pred HHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChh------hhhhHHHHHHhhcCcCCCCchhHHHHHHHHHHHH
Q 000134 1287 HAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLW------AREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCR 1360 (2096)
Q Consensus 1287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~------~~e~iLslRr~vl~~~~~~~~~~~~WL~~AklAR 1360 (2096)
...+... .. -...|..|--++..--+ ..+-+=...+++.. +....+.|.....+..
T Consensus 170 ~~~i~~d--------~~------N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~----~p~n~SaW~y~~~ll~ 231 (306)
T 3dra_A 170 DKVIDTD--------LK------NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK----CPQNPSTWNYLLGIHE 231 (306)
T ss_dssp HHHHHHC--------TT------CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH----CSSCHHHHHHHHHHHH
T ss_pred HHHHHhC--------CC------CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh----CCCCccHHHHHHHHHH
Confidence 4443210 00 12458888766544322 22223333333321 2234678999999999
Q ss_pred HcCChHHHHH-HHHHHhhcC-----CChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1361 LAGHYETATR-AILEAQASG-----APNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1361 Kag~~~~A~~-all~a~~~~-----~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
+.|+...+.. ...++..++ .+.+---.|+++-++|+..+|+..++.+.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 232 RFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 9998544333 223332222 445666677888899999999999998764
No 279
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=51.67 E-value=1.4e+02 Score=38.09 Aligned_cols=154 Identities=6% Similarity=-0.036 Sum_probs=100.5
Q ss_pred HHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCCh---------HHHHHHHH-Hhc---c
Q 000134 1048 RASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEP---------DGLSGLAR-LHK---S 1114 (2096)
Q Consensus 1048 ~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEp---------Dgl~Gi~~-~~~---~ 1114 (2096)
.+..++|....|+..++.-.+.. ..| ....+..|+..|+.-+.. +....+.. +.. .
T Consensus 34 d~c~k~G~~~~A~~lf~~M~~~G---v~p--------d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~ 102 (501)
T 4g26_A 34 DMCSKKGDVLEALRLYDEARRNG---VQL--------SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVV 102 (501)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHHT---CCC--------CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhCCCHHHHHHHHHHHHHcC---CCC--------CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCC
Confidence 34457899999999998754321 112 235688899999865543 22333332 111 1
Q ss_pred CC---hhHHHHHhHhhcCHHHHHHHHHHHHccC-CCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHH
Q 000134 1115 LS---LQDELLSNKKSGNWAEVFTSCEQALQME-PTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGV 1190 (2096)
Q Consensus 1115 ~s---l~~qil~~E~~G~W~~A~~~YE~~Lq~~-p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~v 1190 (2096)
|+ .+.-|-.|-+.|++++|...++...+.. ..+......+|.++...|+++......+.+...--......+..-+
T Consensus 103 Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li 182 (501)
T 4g26_A 103 PNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALL 182 (501)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 22 3345667899999999999999765542 2244455678999999999998877777665431111122234557
Q ss_pred HHHHhcCChhhHHHhhcccCcc
Q 000134 1191 QAAWRLGRWDLMDEYLSGADEE 1212 (2096)
Q Consensus 1191 EAAWrlg~Wd~l~~~l~~~~~~ 1212 (2096)
.+.-+.|++|...+++..+...
T Consensus 183 ~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 183 KVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHh
Confidence 8888999999998888776543
No 280
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=50.87 E-value=50 Score=43.88 Aligned_cols=90 Identities=17% Similarity=0.192 Sum_probs=65.3
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhccCChhHHHHH
Q 000134 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLS 1123 (2096)
Q Consensus 1044 ~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~~sl~~qil~ 1123 (2096)
..+|+.|++.+.+..|...+... ..++.|..+|..++++|.+.-+...
T Consensus 685 ~~la~~al~~~~~~~A~~~y~~~--------------------~d~~~l~~l~~~~~~~~~~~~~~~~------------ 732 (814)
T 3mkq_A 685 RALGDASLQRFNFKLAIEAFTNA--------------------HDLESLFLLHSSFNNKEGLVTLAKD------------ 732 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH--------------------TCHHHHHHHHHHTTCHHHHHHHHHH------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHc--------------------cChhhhHHHHHHcCCHHHHHHHHHH------------
Confidence 57899999999999999888753 2467899999999999987766442
Q ss_pred hHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhh
Q 000134 1124 NKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDG 1173 (2096)
Q Consensus 1124 ~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~g 1173 (2096)
.+..|++..|..+|... ......++++.++|+|+.....++.
T Consensus 733 a~~~~~~~~A~~~~~~~--------g~~~~a~~~~~~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 733 AETTGKFNLAFNAYWIA--------GDIQGAKDLLIKSQRFSEAAFLGST 774 (814)
T ss_dssp HHHTTCHHHHHHHHHHH--------TCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHcCchHHHHHHHHHc--------CCHHHHHHHHHHcCChHHHHHHHHH
Confidence 34567777777777532 1112356667788999887776664
No 281
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=48.50 E-value=31 Score=43.96 Aligned_cols=90 Identities=16% Similarity=0.095 Sum_probs=61.0
Q ss_pred HHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHH----Hh-ccC--------
Q 000134 1049 ASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLAR----LH-KSL-------- 1115 (2096)
Q Consensus 1049 aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~----~~-~~~-------- 1115 (2096)
....-|.|..|+-++|..+........+. ....-..+..|..+|...++.|...-... .+ +.+
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~----Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 393 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADT----NLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG 393 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTT----SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 44566889999999998776543222110 00012457889999999999998877643 11 111
Q ss_pred -ChhHHHHHhHhhcCHHHHHHHHHHHHc
Q 000134 1116 -SLQDELLSNKKSGNWAEVFTSCEQALQ 1142 (2096)
Q Consensus 1116 -sl~~qil~~E~~G~W~~A~~~YE~~Lq 1142 (2096)
++..-...|.+.|+|++|...|++++.
T Consensus 394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 244456778899999999999999986
No 282
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=45.84 E-value=4e+02 Score=32.15 Aligned_cols=138 Identities=9% Similarity=0.061 Sum_probs=75.8
Q ss_pred ccchhhHHHHHHHHHHccCCch-hhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhH
Q 000134 161 SEEVQLSCVRVIRRILVHGTRD-VLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNEL 239 (2096)
Q Consensus 161 ~~~v~~~~~~~l~~il~h~~~~-~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (2096)
+.++|......|..+..+.... ..+.....-+..|-.+|.+++..+|+.++.++..+-. + .+..++.
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~----------~--~~~~~k~ 164 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSW----------R--ADVNSKK 164 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHT----------T--CCHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhc----------c--CCHHHHH
Confidence 3455666666666666554322 1111111123344445578888999999888887530 0 0111222
Q ss_pred -----HHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhh-cccchhH--HHHHHHHHHhhCCCCcc----hHHHHHHHHHH
Q 000134 240 -----KLLDVIKLAFTAADDPLILETLLESTAELMMAV-DVHSQHF--LFLLILLVEQLDNPHVT----VRMNASRLIRK 307 (2096)
Q Consensus 240 -----~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~-~~~~e~~--~~~l~~Li~~L~~~n~~----v~~~A~~~i~~ 307 (2096)
..+..+-+.+....++.+++..+-++..+.... +.+.++. .-++-.|++.|.+++.. +...|..-|.+
T Consensus 165 ~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~n 244 (354)
T 3nmw_A 165 TLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRN 244 (354)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHH
Confidence 234455555555678889998777777763211 1122221 12455577777766543 67777777777
Q ss_pred Hhh
Q 000134 308 SCF 310 (2096)
Q Consensus 308 l~~ 310 (2096)
+|.
T Consensus 245 Ls~ 247 (354)
T 3nmw_A 245 VSS 247 (354)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
No 283
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=44.32 E-value=80 Score=40.24 Aligned_cols=160 Identities=13% Similarity=0.020 Sum_probs=98.0
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHH-h-c--cCChhH--HHH-HhH---------hhcCHHHHHHHHHHHHcc--CCCch
Q 000134 1087 EDVSFLMEIYSFLDEPDGLSGLARL-H-K--SLSLQD--ELL-SNK---------KSGNWAEVFTSCEQALQM--EPTSV 1148 (2096)
Q Consensus 1087 ~~~~~L~~IYa~LdEpDgl~Gi~~~-~-~--~~sl~~--qil-~~E---------~~G~W~~A~~~YE~~Lq~--~p~~~ 1148 (2096)
..+..+++.|+.-++.+.+..+... . . .++... .++ .+- +.|..+.|...|+...+. .|+ .
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd-~ 105 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN-E 105 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC-H
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC-H
Confidence 4577888999999999998888652 1 1 122211 111 222 345578999999876554 344 4
Q ss_pred hhhhhHHHHHHhccChHHHHHHhhhhhcc--ChhhhhhHhHHHHHHHHhcCChhhHHHhhcccCccCccccCCCCCcchh
Q 000134 1149 QRHSDVLNCLLNMCHLQAMVTHVDGLISR--IPQYKKTWCMQGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFD 1226 (2096)
Q Consensus 1149 ~~~~glL~CL~~LGq~~~ll~~~~gl~~~--~p~~~~~~~~~~vEAAWrlg~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~ 1226 (2096)
.....+|+++-+.|+++.+....+.+... .|+ ...+..-+.+.-+.|+++...+.+..+...|.. +....|+
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd--~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~----Pd~~ty~ 179 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR--LRSYGPALFGFCRKGDADKAYEVDAHMVESEVV----PEEPELA 179 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCC----CCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCC----CCHHHHH
Confidence 44567899999999999887777666443 232 122334567778899999888887776554411 1112222
Q ss_pred HHHHHHHHHHHccCchhHHHHHHHHHHHhh
Q 000134 1227 MDVAKILQAMMKKDHFSVSDKIGVSKQVLI 1256 (2096)
Q Consensus 1227 ~~l~kaL~al~~~d~~~f~~~i~~aR~~l~ 1256 (2096)
.+-+++ .+.++.++..+.+++.|....
T Consensus 180 -~Li~~~--~~~g~~d~A~~ll~~Mr~~g~ 206 (501)
T 4g26_A 180 -ALLKVS--MDTKNADKVYKTLQRLRDLVR 206 (501)
T ss_dssp -HHHHHH--HHTTCHHHHHHHHHHHHHHTS
T ss_pred -HHHHHH--hhCCCHHHHHHHHHHHHHhCC
Confidence 122222 245676777777777776543
No 284
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=44.18 E-value=89 Score=39.75 Aligned_cols=79 Identities=11% Similarity=0.040 Sum_probs=61.6
Q ss_pred hhHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhh-----cC--CCh---HHHHHHHHHHHcCCch
Q 000134 1329 EPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQA-----SG--APN---VHMEKAKLLWSTRRSD 1398 (2096)
Q Consensus 1329 e~iLslRr~vl~~~~~~~~~~~~WL~~AklARKag~~~~A~~all~a~~-----~~--~~~---~~iE~AKLLW~~g~~~ 1398 (2096)
+..|..|..+|+..+ .+++.+.-..|.+.+..|+++.|.....+|.. +| .|. ....-|.++|.+|+..
T Consensus 333 ~~aL~~~~~~lg~~H--p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~ 410 (490)
T 3n71_A 333 RECLEKQEPVFADTN--LYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIE 410 (490)
T ss_dssp HHHHHHHTTTBCTTS--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhcCCCC--HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHH
Confidence 345666777777654 36788889999999999999999887776643 33 343 4556789999999999
Q ss_pred HHHHHHHHHhh
Q 000134 1399 GAIAELQQNLL 1409 (2096)
Q Consensus 1399 ~Ai~~L~~~i~ 1409 (2096)
+|...++++++
T Consensus 411 eA~~~~~~Al~ 421 (490)
T 3n71_A 411 VGHGMICKAYA 421 (490)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999876
No 285
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=42.47 E-value=1.1e+02 Score=35.21 Aligned_cols=105 Identities=10% Similarity=0.046 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhh----c-CC----ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccc
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQA----S-GA----PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGST 1419 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~----~-~~----~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~ 1419 (2096)
..++...+.+-.+.|.++.|.....+|.. . +. ..+....+.++...|+..+|+..++++++-.+.
T Consensus 155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~------ 228 (293)
T 3u3w_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR------ 228 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH------
Confidence 45678888899999999999988877763 2 22 135678889999999999999999998762100
Q ss_pred ccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Q 000134 1420 AISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQP 1484 (2096)
Q Consensus 1420 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~ 1484 (2096)
.......|.++..+|.-....|+ ..+++++.|++|.++..
T Consensus 229 ------------------------~~~~~~~~~~~~~lg~~~~~~g~-~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 229 ------------------------INSMALIGQLYYQRGECLRKLEY-EEAEIEDAYKKASFFFD 268 (293)
T ss_dssp ------------------------TTBCTTHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHH
T ss_pred ------------------------cCcHHHHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHH
Confidence 00112457888888887777774 24778888888887654
No 286
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=41.62 E-value=2.8e+02 Score=31.87 Aligned_cols=138 Identities=4% Similarity=0.027 Sum_probs=80.7
Q ss_pred chhhHHHHHHHHHHccCCchhh----hhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhh
Q 000134 163 EVQLSCVRVIRRILVHGTRDVL----LKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNE 238 (2096)
Q Consensus 163 ~v~~~~~~~l~~il~h~~~~~~----~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (2096)
..|...++.|..++.....+.. .........++...+.|++-.|-..+...+..|++... .....+...
T Consensus 24 K~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~-------~~~~~~~~~ 96 (278)
T 4ffb_C 24 KARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFA-------SSSLKNAHN 96 (278)
T ss_dssp HHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC----------CCHHHH
T ss_pred HHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhh-------hhhcccchh
Confidence 3578899999998877553321 11122222344556699999999999999998873222 111111111
Q ss_pred ----HHHHHHHHHH-hhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhh
Q 000134 239 ----LKLLDVIKLA-FTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFH 312 (2096)
Q Consensus 239 ----~~~~~~~~~~-~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~ 312 (2096)
..++..+..- +.. ..+.+.+..+.++-.++... ...+. ++-.++..|.|.||-++..+...|.++-..+
T Consensus 97 ~~~~~~~l~~lveK~l~~-~k~~~~~~a~~~l~~~~~~~-~~~~~---~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f 170 (278)
T 4ffb_C 97 ITLISTWTPLLVEKGLTS-SRATTKTQSMSCILSLCGLD-TSITQ---SVELVIPFFEKKLPKLIAAAANCVYELMAAF 170 (278)
T ss_dssp HHHHHHHHHHHHHHTSSC-CCHHHHHHHHHHHHHHHHTS-SSSHH---HHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcC-ccHHHHHHHHHHHHHHHHhc-CcHHH---HHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence 2233333332 333 33557777777776654322 22222 2345778999999999999999998875544
No 287
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=41.10 E-value=3.6e+02 Score=31.40 Aligned_cols=139 Identities=12% Similarity=0.036 Sum_probs=87.1
Q ss_pred HhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHHHHHHHH----HhhhcCChhHHHHHHHHHHHHHhhhc
Q 000134 198 LLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKL----AFTAADDPLILETLLESTAELMMAVD 273 (2096)
Q Consensus 198 ~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~d~~i~eTll~~~~~i~~~~~ 273 (2096)
.|-++|=.-|.+++-.+...++.. ...-...+|.+.+ .+- -+++.+...+|+.+..+..+..
T Consensus 54 ~lfs~d~k~~~~ale~L~~~l~~~-------------~~~~~~~lDll~kw~~lr~~-d~N~~v~~~~L~~L~~l~~~l~ 119 (266)
T 2of3_A 54 QLFHKDFKQHLAALDSLVRLADTS-------------PRSLLSNSDLLLKWCTLRFF-ETNPAALIKVLELCKVIVELIR 119 (266)
T ss_dssp HHTCSCHHHHHHHHHHHHHHHHHC-------------HHHHHHTHHHHHHHHHHHTT-SCCHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHhhhC-------------hHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHH
Confidence 347788888999988888865210 1111333333332 222 3588999999999988754332
Q ss_pred cc-----chhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccchhhhhhhhhhHHHHHHhcCchHHHHH
Q 000134 274 VH-----SQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVRE 348 (2096)
Q Consensus 274 ~~-----~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~rp~~~~~ 348 (2096)
.. ..--...+=.||+.||+++..||..+...+..++.-. .+ ..+|+++..-+.++---+++
T Consensus 120 ~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~--------~~------~~v~~~l~~g~ksKN~R~R~ 185 (266)
T 2of3_A 120 DTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV--------GP------LKMTPMLLDALKSKNARQRS 185 (266)
T ss_dssp HTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH--------CH------HHHHHHHHHGGGCSCHHHHH
T ss_pred hccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHC--------CH------HHHHHHHHHHHccCCHHHHH
Confidence 11 1112345566999999999999999998887775432 11 34689998888877655555
Q ss_pred HHHHHhCCChHHHHHhhcccccc
Q 000134 349 FAEAAFGVETEELVKKMIPAVLP 371 (2096)
Q Consensus 349 ~~e~llg~~~~~fL~~~~~~~LP 371 (2096)
=|- +.+...+..|-++
T Consensus 186 e~l-------~~l~~li~~~G~~ 201 (266)
T 2of3_A 186 ECL-------LVIEYYITNAGIS 201 (266)
T ss_dssp HHH-------HHHHHHHHHHCSG
T ss_pred HHH-------HHHHHHHHhcCCC
Confidence 442 3444444445554
No 288
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=41.07 E-value=1.1e+02 Score=42.33 Aligned_cols=210 Identities=12% Similarity=0.218 Sum_probs=111.6
Q ss_pred HHHHHHHHHHcCC--CchhHHhhhHHHHHHHHhcccc--HHHHHHHHH-HHhhhcCCChHHHHHHhhHHHHHHHHHhhcC
Q 000134 384 VNIINELAKCLNT--DMVPLIVTWIPKVLAFALHQAD--ERRLLSALE-FYCIQTGSDNQEIFAAALPALLDELICFVDG 458 (2096)
Q Consensus 384 ~~~i~~ia~~~~~--~~~~l~~~~~~~Ila~ll~~~~--~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~l~eLl~~~~~ 458 (2096)
...+..||+..+. ...|.+..-+|.+|..+--... ++-+..++. ++... ++..+ ...+|.++.-| ..
T Consensus 73 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~---~~~a~-~~~~~~~~~~~----~~ 144 (986)
T 2iw3_A 73 MQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAV---NPVAI-KALLPHLTNAI----VE 144 (986)
T ss_dssp HHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS---CGGGH-HHHHHHHHHHH----HH
T ss_pred HHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhC---CHHHH-HHHHHHHHHHh----cc
Confidence 3556666644433 4667777777777665442211 122222222 22222 22222 45566666533 22
Q ss_pred CCchhHhhhhcchhHHHHHHhhhccCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhcc-ccccc
Q 000134 459 GDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGS-HLTTY 537 (2096)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~-~v~~~ 537 (2096)
+..=.++ .-+++-+.++... .+..+...+-.|+-.+.+.|.+.+ .+.|+.+..+|..+..+++. -|.+|
T Consensus 145 ~~kw~~k------~~~l~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~d~k-~~v~~~~~~~~~~~~~~~~n~d~~~~ 214 (986)
T 2iw3_A 145 TNKWQEK------IAILAAFSAMVDA---AKDQVALRMPELIPVLSETMWDTK-KEVKAAATAAMTKATETVDNKDIERF 214 (986)
T ss_dssp CCCHHHH------HHHHHHHHHHHHH---SHHHHHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHGGGCCCTTTGGG
T ss_pred ccchHHH------HHHHHHHHHHHHH---hHHHHHHhccchhcchHhhcccCc-HHHHHHHHHHHHHHHhcCCCcchhhh
Confidence 2111111 1233333333221 256677777778888888776544 56788888888888888887 79999
Q ss_pred hhhHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhccc-cCCCCchhhHHHHHHHHHHHH--
Q 000134 538 VPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLE-RDKDNPSVLLNKVVKILEDLV-- 614 (2096)
Q Consensus 538 ~pqI~a~L~~aL~~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~-~~~~~~~~~~~~~~~il~~Li-- 614 (2096)
.|.++.|+..-= +++ ..|+.|..+ .=+..+-+-+.+.++|++. ...+.++..+.++.-|++.+-
T Consensus 215 ~~~~~~~~~~p~---~~~--------~~~~~l~~~--tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~l 281 (986)
T 2iw3_A 215 IPSLIQCIADPT---EVP--------ETVHLLGAT--TFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKL 281 (986)
T ss_dssp HHHHHHHHHCTT---HHH--------HHHHHHTTC--CCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcChh---hhH--------HHHHHhhcC--eeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhh
Confidence 999888876441 111 236666432 1122222445556667664 233555566677777766552
Q ss_pred HHhHHHHHhh
Q 000134 615 LKNRAILKQH 624 (2096)
Q Consensus 615 ~~n~~~L~~~ 624 (2096)
+++......|
T Consensus 282 v~~~~~~~~f 291 (986)
T 2iw3_A 282 VEDPQVIAPF 291 (986)
T ss_dssp CCCHHHHHHH
T ss_pred cCCHHHHhhh
Confidence 2344444433
No 289
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=40.60 E-value=4.9e+02 Score=32.65 Aligned_cols=138 Identities=8% Similarity=0.057 Sum_probs=76.7
Q ss_pred cchhhHHHHHHHHHHccCCch-hhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHH
Q 000134 162 EEVQLSCVRVIRRILVHGTRD-VLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELK 240 (2096)
Q Consensus 162 ~~v~~~~~~~l~~il~h~~~~-~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (2096)
.+++--...+|..+..+.... ..+.....-+..|-.+|.+++..||..++.++..+- .+ .+..++..
T Consensus 214 ~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs----------~~--~~~~~k~~ 281 (458)
T 3nmz_A 214 ITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLS----------WR--ADVNSKKT 281 (458)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHT----------SS--CCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHh----------cC--CCHHHHHH
Confidence 345555666666666554322 111111112334445567888899999988887742 11 11122222
Q ss_pred -----HHHHHHHHhhhcCChhHHHHHHHHHHHHHhhh-cccchhH--HHHHHHHHHhhCCCCcc----hHHHHHHHHHHH
Q 000134 241 -----LLDVIKLAFTAADDPLILETLLESTAELMMAV-DVHSQHF--LFLLILLVEQLDNPHVT----VRMNASRLIRKS 308 (2096)
Q Consensus 241 -----~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~-~~~~e~~--~~~l~~Li~~L~~~n~~----v~~~A~~~i~~l 308 (2096)
.+..+-+.+....++.+++..+-+++.|.... +.+.++. .-++-.|++.|.+++.. +...|.--|.++
T Consensus 282 I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nL 361 (458)
T 3nmz_A 282 LREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV 361 (458)
T ss_dssp HHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHH
Confidence 34455555555668889998887777773311 1222222 12455677777776543 777777778788
Q ss_pred hhh
Q 000134 309 CFF 311 (2096)
Q Consensus 309 ~~~ 311 (2096)
|.+
T Consensus 362 s~~ 364 (458)
T 3nmz_A 362 SSL 364 (458)
T ss_dssp HHH
T ss_pred Hhc
Confidence 653
No 290
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=39.94 E-value=1.7e+02 Score=31.75 Aligned_cols=66 Identities=5% Similarity=-0.119 Sum_probs=51.8
Q ss_pred CCCChhhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhcc
Q 000134 630 LLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGE 697 (2096)
Q Consensus 630 ~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~~l~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e 697 (2096)
.-|+....-++-..++... ...++.++.+.+|++|-|+.|.++||.=|..+.+.....+|..+.+.
T Consensus 27 ~~~Dw~~ileicD~I~~~~--~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~ 92 (171)
T 1juq_A 27 RQEDWEYIIGFCDQINKEL--EGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKF 92 (171)
T ss_dssp SSCCHHHHHHHHHHHHHST--THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSH
T ss_pred CCcCHHHHHHHHHHHHcCC--ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhH
Confidence 3466666666767776543 36789999999999999999999999999999988877788766543
No 291
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=39.54 E-value=75 Score=39.82 Aligned_cols=151 Identities=9% Similarity=0.111 Sum_probs=95.3
Q ss_pred HHHHhhcccCccchhhHHHHHHHHHHccCCch---h---hhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhh
Q 000134 151 IYFEFLYDESSEEVQLSCVRVIRRILVHGTRD---V---LLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLS 224 (2096)
Q Consensus 151 ~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~---~---~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~ 224 (2096)
.+..+|-...+++++-++..+|..+....... + .+.. ..-+..|-.||.+++..||..++..++.+-.++-..
T Consensus 287 ~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~-~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~ 365 (457)
T 1xm9_A 287 TYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLK-EKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLH 365 (457)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTT-SCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGH
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHH-cCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHH
Confidence 36677877777889999999999998754321 1 1110 112345666779999999999999999864222111
Q ss_pred hhccCcccccchhhHHHHHHHHHHhhhcCC-----hhHHHHHHHHHHHHHhhhcccchhHH--HHHHHHHHhhCCC-Ccc
Q 000134 225 SLFLDENASSRSNELKLLDVIKLAFTAADD-----PLILETLLESTAELMMAVDVHSQHFL--FLLILLVEQLDNP-HVT 296 (2096)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----~~i~eTll~~~~~i~~~~~~~~e~~~--~~l~~Li~~L~~~-n~~ 296 (2096)
..+ ....+-.+.+.+...+. +.++...+.+++.|..+.......+. -++=.|++-+.|. |.-
T Consensus 366 ~~i----------~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~ 435 (457)
T 1xm9_A 366 RVM----------GNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPK 435 (457)
T ss_dssp HHH----------HHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHH
T ss_pred HHH----------HHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHH
Confidence 111 12344555565554422 35777888888887543222222221 2455678888888 899
Q ss_pred hHHHHHHHHHHHhhhh
Q 000134 297 VRMNASRLIRKSCFFH 312 (2096)
Q Consensus 297 v~~~A~~~i~~l~~~~ 312 (2096)
++-.|+..|.+++.+.
T Consensus 436 i~~~A~~~L~~~~~~~ 451 (457)
T 1xm9_A 436 AAEAARLLLSDMWSSK 451 (457)
T ss_dssp HHHHHHHHHHTTSSST
T ss_pred HHHHHHHHHHHHHcch
Confidence 9999999998886543
No 292
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=39.45 E-value=1.8e+02 Score=31.36 Aligned_cols=71 Identities=14% Similarity=0.143 Sum_probs=53.1
Q ss_pred cccCCCCCChhhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhcc
Q 000134 625 IHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGE 697 (2096)
Q Consensus 625 i~~lp~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~~l~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e 697 (2096)
-.+...-|+....-++...++.. ....++.++.+.+|++|.|+.|.++||.=|..+.+.....+|..+.+.
T Consensus 24 Ts~~~~~~Dw~~~leicD~I~~~--~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~ 94 (163)
T 1x5b_A 24 TNEYNTTEDWSLIMDICDKVGST--PNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSR 94 (163)
T ss_dssp TCTTCSSCCHHHHHHHHHHHHHS--SSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSH
T ss_pred cCCCCCCcCHHHHHHHHHHHhCC--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhH
Confidence 33333446666666676677653 346789999999999999999999999999998888766677655543
No 293
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=38.74 E-value=44 Score=32.35 Aligned_cols=51 Identities=25% Similarity=0.107 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChh
Q 000134 1130 WAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ 1180 (2096)
Q Consensus 1130 W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~ 1180 (2096)
-.+|...++++|+.+|+++.....+=.-+.+.|+|+..+.+-+.++...|+
T Consensus 25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 468888888888888888777665555666778888777776666655554
No 294
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=38.38 E-value=7.1e+02 Score=31.47 Aligned_cols=252 Identities=13% Similarity=0.102 Sum_probs=127.8
Q ss_pred cccCCChhhHHHHHHHhhcc---cCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHh
Q 000134 139 LNFHSDFSFLLNIYFEFLYD---ESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIG 215 (2096)
Q Consensus 139 ~~~~~~~~~~~~~~~~~l~~---~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~ 215 (2096)
..|=-+|+.++.--++-++| ..+..||+..++.|+.++++ +.+ -+ ...-|--||...+..-+.+.-.++-
T Consensus 53 ~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i-~k----iaDvL~QlLqtdd~~E~~~V~~sL~ 125 (507)
T 3u0r_A 53 PKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENL-PR----VADILTQLLQTDDSAEFNLVNNALL 125 (507)
T ss_dssp HHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCH-HH----HHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhh-hh----HHHHHHHHHhccchHHHHHHHHHHH
Confidence 34455677788877777666 66677899999999999998 221 11 1112223346666666666666655
Q ss_pred Hhh---hhhhhhhhccCcccccchhhHHHHHHHHHHhhh-cCChhHHHHHHHHHHHHHhh-hcccchhHHHHHHHHHHhh
Q 000134 216 YFL---QDTVLSSLFLDENASSRSNELKLLDVIKLAFTA-ADDPLILETLLESTAELMMA-VDVHSQHFLFLLILLVEQL 290 (2096)
Q Consensus 216 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~i~eTll~~~~~i~~~-~~~~~e~~~~~l~~Li~~L 290 (2096)
.++ -+..|..+|+.-..++-.-++.++..|...+-. ..+..-.|+=-.-+.+|.+. .|+.++-|.+.+ -++.+|
T Consensus 126 sllk~Dpk~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m-~lL~~l 204 (507)
T 3u0r_A 126 SIFKMDAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTGEEFVLFM-KILSGL 204 (507)
T ss_dssp HHHHHCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHH-HHHHTS
T ss_pred HHHhcChHHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccccHHHHHHHH-HHHHhc
Confidence 554 233444455444333444456777777754444 34433344433344444322 355666663332 344555
Q ss_pred CCCCcchHHHHHHHHHHHhhhhcc--cccccccchhhhhhhhhhHHHHHHhcCchHHHHHHHHHHhCCChHHHHHhhccc
Q 000134 291 DNPHVTVRMNASRLIRKSCFFHLK--GGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVKKMIPA 368 (2096)
Q Consensus 291 ~~~n~~v~~~A~~~i~~l~~~~~~--~~~~l~~~~~~~~~~~l~~~~~~~l~~rp~~~~~~~e~llg~~~~~fL~~~~~~ 368 (2096)
.-..+ +.| ..+++.+..-+-- .+++- ... -.+.++++-=.++--+ .-=|++...|+.-+..+
T Consensus 205 kl~~t-~~g--~qeLv~ii~eQa~L~~~f~~---sD~--------e~vdRlI~C~~~ALP~--FS~~v~StkFv~y~~~k 268 (507)
T 3u0r_A 205 KSLQT-VSG--RQQLVELVAEQADLEQTFNP---SDP--------DCVDRLLQCTRQAVPL--FSKNVHSTRFVTYFCEQ 268 (507)
T ss_dssp GGGSS-HHH--HHHHHHHHHHHHTTTSCCCS---SCH--------HHHHHHHHHHHHHGGG--CBTTBCCHHHHHHHHHH
T ss_pred ccccC-chH--HHHHHHHHHHHHhccCCCCC---cCH--------HHHHHHHHHHHHHHHH--hccCCChHHHHHHHHHh
Confidence 54433 232 3455555444311 11110 010 0222222211111000 01355668899999999
Q ss_pred ccchhhhcccc---ChhHHHHHHHHHHHcCCCc-hhHHhhhHHHHHHHHh
Q 000134 369 VLPKLVVSQQD---NDQAVNIINELAKCLNTDM-VPLIVTWIPKVLAFAL 414 (2096)
Q Consensus 369 ~LP~LVl~~~~---~~~~~~~i~~ia~~~~~~~-~~l~~~~~~~Ila~ll 414 (2096)
+||.+=.-... +.....+|+.+|....-.- .+--...++.|+-+|+
T Consensus 269 IlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~ 318 (507)
T 3u0r_A 269 VLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLL 318 (507)
T ss_dssp TGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHH
T ss_pred hccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHH
Confidence 99976543221 0123456777766433222 2222345666666666
No 295
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.90 E-value=89 Score=37.70 Aligned_cols=89 Identities=13% Similarity=0.157 Sum_probs=61.5
Q ss_pred CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHH
Q 000134 1380 APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSR 1459 (2096)
Q Consensus 1380 ~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~Lllak 1459 (2096)
.|...+|+|+-+.+.|+..+|+..++++++..+... .. ...............+++..+|+
T Consensus 3 ~p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~--~~-----------------~~~~~~~~~~~~~~~~al~~l~~ 63 (434)
T 4b4t_Q 3 LPGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQS--SA-----------------AAGASVDDKRRNEQETSILELGQ 63 (434)
T ss_dssp STTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSS--SB-----------------SSSSSBCSHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccc--hh-----------------HHHHHHHHHHhhhHHHHHHHHHH
Confidence 588899999999999999999999999987543210 00 00000111123355677888888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhccchHHH
Q 000134 1460 WIHYTGQKQKEDVITLYSRVRELQPMWEKG 1489 (2096)
Q Consensus 1460 Wl~~~~~~~~~~i~~~Y~~a~~l~~~weK~ 1489 (2096)
.....|+ .+++++.|+++.+..+.-.++
T Consensus 64 ~y~~~~~--~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 64 LYVTMGA--KDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHTC--HHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHCCC--HHHHHHHHHHHHHHHHHccch
Confidence 8777776 788889999888877665443
No 296
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=37.54 E-value=28 Score=40.29 Aligned_cols=46 Identities=35% Similarity=0.294 Sum_probs=37.5
Q ss_pred HHHhhhcccchhhhhhhhhhchhhhhhhcCccchHHHHHHHhhhchhhhhhhhhhccchh
Q 000134 7 EILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFPISF 66 (2096)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (2096)
+++.-.++|+..+||..|+..+|.. .|..+.+|....|+...+..|
T Consensus 53 ~l~~~ll~d~~~~VR~~AA~~l~~~--------------~l~~L~~D~~~~VR~~aA~~L 98 (244)
T 1lrv_A 53 HLAVQYLADPFWERRAIAVRYSPVE--------------ALTPLIRDSDEVVRRAVAYRL 98 (244)
T ss_dssp GGGGGGTTCSSHHHHHHHHTTSCGG--------------GGGGGTTCSSHHHHHHHHTTS
T ss_pred HHHHHHhcCCCHHHHHHHHHhCCHH--------------HHHHHccCcCHHHHHHHHHHC
Confidence 4455567999999999999988643 277889999999999999764
No 297
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=36.95 E-value=8.8 Score=39.36 Aligned_cols=84 Identities=13% Similarity=0.094 Sum_probs=59.0
Q ss_pred HHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcc
Q 000134 195 IEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDV 274 (2096)
Q Consensus 195 ~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~ 274 (2096)
+..+|.|++..||.++...+..+- + .. +..+..++. -+|+.|+...+.++|.++...
T Consensus 17 l~~~L~~~~~~vR~~A~~~L~~~~------------~--~~------~~~L~~~L~-d~~~~vR~~A~~aL~~~~~~~-- 73 (131)
T 1te4_A 17 RGSHMADENKWVRRDVSTALSRMG------------D--EA------FEPLLESLS-NEDWRIRGAAAWIIGNFQDER-- 73 (131)
T ss_dssp ----CCSSCCCSSSSCCSSTTSCS------------S--TT------HHHHHHGGG-CSCHHHHHHHHHHHGGGCSHH--
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhC------------c--hH------HHHHHHHHc-CCCHHHHHHHHHHHHhcCCHH--
Confidence 344569999999999876665411 1 11 245556565 478999999999999974322
Q ss_pred cchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHH
Q 000134 275 HSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKS 308 (2096)
Q Consensus 275 ~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l 308 (2096)
++-.|++.|.++++.||..|..-+-++
T Consensus 74 -------a~~~L~~~L~d~~~~VR~~A~~aL~~~ 100 (131)
T 1te4_A 74 -------AVEPLIKLLEDDSGFVRSGAARSLEQI 100 (131)
T ss_dssp -------HHHHHHHHHHHCCTHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 455677778899999999999888776
No 298
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=34.13 E-value=2.2e+02 Score=28.92 Aligned_cols=101 Identities=7% Similarity=-0.060 Sum_probs=71.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhcCCChHHHHHHHHHHH----cCCchHHHHHHHHHhhcCCcccccccccccccccCCC
Q 000134 1355 YAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWS----TRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLV 1430 (2096)
Q Consensus 1355 ~AklARKag~~~~A~~all~a~~~~~~~~~iE~AKLLW~----~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~ 1430 (2096)
.+.+-...+..+.|.....+|...+.+.+...-+.++.. .++..+|+..++++.+. |.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~------g~------------ 92 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL------ND------------ 92 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT------TC------------
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC------CC------------
Confidence 444455556666688888888888999999999999988 88999999999988652 00
Q ss_pred CCCCCCcccccccchhchhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccchHHHHHHHHh
Q 000134 1431 PLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYT--GQKQKEDVITLYSRVRELQPMWEKGYFYMAK 1495 (2096)
Q Consensus 1431 ~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~--~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~ 1495 (2096)
+.++..+|.....- ...+.+..++.|++|.+... ..+.+.+|+
T Consensus 93 --------------------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~--~~A~~~l~~ 137 (138)
T 1klx_A 93 --------------------QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS--EDACGILNN 137 (138)
T ss_dssp --------------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHC--
T ss_pred --------------------HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHhh
Confidence 33566666654431 14568888899999988743 345555543
No 299
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=33.68 E-value=1.5e+02 Score=37.01 Aligned_cols=54 Identities=11% Similarity=0.247 Sum_probs=34.3
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHHccC-----CCch---hhhhhHHHHHHhccChHHHHHHhh
Q 000134 1119 DELLSNKKSGNWAEVFTSCEQALQME-----PTSV---QRHSDVLNCLLNMCHLQAMVTHVD 1172 (2096)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~-----p~~~---~~~~glL~CL~~LGq~~~ll~~~~ 1172 (2096)
..+-.+.+.|+|++|...|+++|+.. |++. ....++..-+.++|+|+....+.+
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~ 353 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGT 353 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 34556778899999999999998753 3332 122234444455677776555444
No 300
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=33.38 E-value=7.1e+02 Score=29.97 Aligned_cols=167 Identities=14% Similarity=0.178 Sum_probs=99.2
Q ss_pred hhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHH-hcc------ccccchhhHHHHHHHHhcCCCcchhhhHHH
Q 000134 490 GFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEM-IGS------HLTTYVPKILVLLMHAINKESLQCEGLSVL 562 (2096)
Q Consensus 490 ~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l-~g~------~v~~~~pqI~a~L~~aL~~~~L~~~~l~~W 562 (2096)
.+.+..+|-.+-.-= +.=+++.||.+-.-+..+++- .|+ ++.. .|.|+.+|..+-+.++ .|+.|=
T Consensus 73 ei~~~dll~~Li~~l----~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~-~peil~~L~~gYe~~d---iAl~~G 144 (341)
T 1upk_A 73 ELYNSGLLSTLVADL----QLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT-QQNILFMLLKGYESPE---IALNCG 144 (341)
T ss_dssp HHHHHSHHHHHHHTG----GGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT-CTHHHHHHHHGGGSTT---THHHHH
T ss_pred HHHHhCHHHHHHHhc----ccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc-CHHHHHHHHHhhccch---hHhHHH
Confidence 555665555443211 123677777776666666663 232 3333 6999999999998776 444444
Q ss_pred HHHHHHhccCCCcchhh-HH-HHHHHHhhhccccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCChhhhHHH
Q 000134 563 HFFIEQLSRVSPSSTKH-VI-SQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEV 640 (2096)
Q Consensus 563 ~~fv~~L~~~~~~~l~~-ll-~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~l~~v 640 (2096)
..+-.++.. +.+.. +| +..|..+..|++. +. =.+...|...|+.|+..|+..+.+|+..
T Consensus 145 ~mLRecir~---e~la~~iL~~~~f~~fF~yv~~-~~--FdiasDAf~TfkelLt~Hk~lvaefL~~------------- 205 (341)
T 1upk_A 145 IMLRECIRH---EPLAKIILWSEQFYDFFRYVEM-ST--FDIASDAFATFKDLLTRHKLLSAEFLEQ------------- 205 (341)
T ss_dssp HHHHHHHTS---HHHHHHHHHSGGGGHHHHHTTC-SS--HHHHHHHHHHHHHHHHSSHHHHHHHHHH-------------
T ss_pred HHHHHHHHh---HHHHHHHhccHHHHHHHHHhcC-CC--chHHHHHHHHHHHHHhccHHHHHHHHHH-------------
Confidence 443334321 23322 12 2333334344431 11 1345678889999999898888766532
Q ss_pred HHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhh--cHHHHHHHH
Q 000134 641 NKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKL--KSEDVTALI 694 (2096)
Q Consensus 641 ~~~l~~~r~~~~l~~~l~~~~~~l~~en~~Vr~~aL~eL~~~L~~--~~~~l~~~~ 694 (2096)
....-+..+-+-++++|=-.+.|+|+=|.++|-. |..-+...+
T Consensus 206 -----------nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yi 250 (341)
T 1upk_A 206 -----------HYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYI 250 (341)
T ss_dssp -----------THHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHT
T ss_pred -----------hHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHh
Confidence 1123345566677888867799999999999987 444444444
No 301
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=32.45 E-value=2.1e+02 Score=30.36 Aligned_cols=64 Identities=6% Similarity=-0.097 Sum_probs=48.4
Q ss_pred CChhhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhcc
Q 000134 632 PSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGE 697 (2096)
Q Consensus 632 p~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~~l~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e 697 (2096)
|+....-++-..++.. +...++..+.+.+|++|.|+.|.++||.=|..+.+.....+|.-+.+.
T Consensus 27 ~dw~~ileicD~I~~~--~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~ 90 (149)
T 3g2s_A 27 LDWASINGFCEQLNED--FEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKF 90 (149)
T ss_dssp CCHHHHHHHHHHGGGS--SSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSH
T ss_pred cCHHHHHHHHHHHHCC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhH
Confidence 4544444555555432 346789999999999999999999999999988888877777766554
No 302
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=31.94 E-value=4.4e+02 Score=34.23 Aligned_cols=149 Identities=11% Similarity=0.079 Sum_probs=85.0
Q ss_pred HHHHHhhcccCccchhhHHHHHHHHHHccCCc---hh--hhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhh
Q 000134 150 NIYFEFLYDESSEEVQLSCVRVIRRILVHGTR---DV--LLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLS 224 (2096)
Q Consensus 150 ~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~---~~--~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~ 224 (2096)
+.+.++|-.....+++-++..+|+.+...... .. .+. ...-+.+|-.||.+++..|+.++|..|+.+-.++-
T Consensus 311 ~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~-~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~-- 387 (584)
T 3l6x_A 311 RIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALR-QEKALSAIADLLTNEHERVVKAASGALRNLAVDAR-- 387 (584)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHT-SHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCS--
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHH-HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChh--
Confidence 35677776667788998899999988764321 11 111 12335678888899999999999999999642211
Q ss_pred hhccCcccccchhhHHHHHHHHHHhhhcC-------ChhHHHHHHHHHHHHHhhhcccchhH-HH-HHHHHHHhhCCC--
Q 000134 225 SLFLDENASSRSNELKLLDVIKLAFTAAD-------DPLILETLLESTAELMMAVDVHSQHF-LF-LLILLVEQLDNP-- 293 (2096)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------d~~i~eTll~~~~~i~~~~~~~~e~~-~~-~l~~Li~~L~~~-- 293 (2096)
.-......++-.+-+.|...+ ..++++..+-+++.|+.+.+.+...+ .. ++=.|+..|.+.
T Consensus 388 --------~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~ 459 (584)
T 3l6x_A 388 --------NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNR 459 (584)
T ss_dssp --------CHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSS
T ss_pred --------HHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCC
Confidence 111112446666666666553 34567777777777643222122211 11 122344444443
Q ss_pred CcchHHHHHHHHHHHh
Q 000134 294 HVTVRMNASRLIRKSC 309 (2096)
Q Consensus 294 n~~v~~~A~~~i~~l~ 309 (2096)
++.+.-.|...+.+++
T Consensus 460 ~~~v~k~Aa~vL~nl~ 475 (584)
T 3l6x_A 460 SEKEVRAAALVLQTIW 475 (584)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHH
Confidence 4455555555555543
No 303
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=31.92 E-value=1.7e+02 Score=36.46 Aligned_cols=102 Identities=8% Similarity=-0.079 Sum_probs=71.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhh-----cCC--Ch---HHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccc
Q 000134 1352 WLQYAKLCRLAGHYETATRAILEAQA-----SGA--PN---VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAI 1421 (2096)
Q Consensus 1352 WL~~AklARKag~~~~A~~all~a~~-----~~~--~~---~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~ 1421 (2096)
-+...+-+++.|.++.|.....++.. +++ |. ..---|.+++++|+.++|+...+++++-.. .
T Consensus 301 ~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~-~------- 372 (433)
T 3qww_A 301 VIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYS-K------- 372 (433)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-H-------
T ss_pred HHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH-H-------
Confidence 35556677888999999888777653 232 22 233457889999999999999999876210 0
Q ss_pred ccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 000134 1422 SSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQ 1483 (2096)
Q Consensus 1422 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~ 1483 (2096)
....+.+++|..+..+|.-....|+ .+++...|++|.+..
T Consensus 373 --------------------~lG~~Hp~~a~~l~nLa~~~~~qg~--~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 373 --------------------HYPVYSLNVASMWLKLGRLYMGLEN--KAAGEKALKKAIAIM 412 (433)
T ss_dssp --------------------HSCSSCHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHH
T ss_pred --------------------HcCCCChHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHH
Confidence 0112456778888888888777775 677888888887763
No 304
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=31.83 E-value=1e+02 Score=38.64 Aligned_cols=79 Identities=14% Similarity=0.084 Sum_probs=61.6
Q ss_pred hhHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhh-----cC--CCh---HHHHHHHHHHHcCCch
Q 000134 1329 EPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQA-----SG--APN---VHMEKAKLLWSTRRSD 1398 (2096)
Q Consensus 1329 e~iLslRr~vl~~~~~~~~~~~~WL~~AklARKag~~~~A~~all~a~~-----~~--~~~---~~iE~AKLLW~~g~~~ 1398 (2096)
+..|..|..+|++.+ ..++.+.-..|.+.+..|+++.|.....+|.. +| .|. ....-|+++|.+|+..
T Consensus 322 ~~~L~i~~~~lg~~H--p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~ 399 (433)
T 3qww_A 322 ELSQEKMSSVFEDSN--VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKA 399 (433)
T ss_dssp HHHHHHHTTTBCTTS--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhhCccChhc--hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHH
Confidence 345666666777654 36788888999999999999999888777643 34 343 3456789999999999
Q ss_pred HHHHHHHHHhh
Q 000134 1399 GAIAELQQNLL 1409 (2096)
Q Consensus 1399 ~Ai~~L~~~i~ 1409 (2096)
+|+..++++++
T Consensus 400 eA~~~~~~Al~ 410 (433)
T 3qww_A 400 AGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 305
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=31.26 E-value=4.8e+02 Score=35.84 Aligned_cols=117 Identities=12% Similarity=0.076 Sum_probs=67.8
Q ss_pred HHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhc
Q 000134 194 CIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVD 273 (2096)
Q Consensus 194 ~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~ 273 (2096)
-|..+..|++..||.+|.-.+..+. -+. .+ ...++...+.+-.||.|.--.-+++|.|+-+.
T Consensus 582 LL~~~~~d~~d~VRraAViaLGlI~---------~g~-------~e-~v~rlv~~L~~~~d~~VR~gAalALGli~aGn- 643 (963)
T 4ady_A 582 LLHVAVSDSNDDVRRAAVIALGFVL---------LRD-------YT-TVPRIVQLLSKSHNAHVRCGTAFALGIACAGK- 643 (963)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHT---------SSS-------CS-SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSS-
T ss_pred HHHHhccCCcHHHHHHHHHHHHhhc---------cCC-------HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCC-
Confidence 4555557888888888877776643 111 12 34455555777788889888888888874211
Q ss_pred ccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccchhhhhhhhhhHHHH
Q 000134 274 VHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLS 336 (2096)
Q Consensus 274 ~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~ 336 (2096)
.+.+.+ =.|...+..++..||..|..-+-.+-.-. .+-..++...++.+|..+..
T Consensus 644 ~~~~ai----d~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gt----nna~~~rva~~l~~L~~~~~ 698 (963)
T 4ady_A 644 GLQSAI----DVLDPLTKDPVDFVRQAAMIALSMILIQQ----TEKLNPQVADINKNFLSVIT 698 (963)
T ss_dssp CCHHHH----HHHHHHHTCSSHHHHHHHHHHHHHHSTTC----CTTTCTTHHHHHHHHHHHHH
T ss_pred CcHHHH----HHHHHHccCCCHHHHHHHHHHHHHHhcCC----ccccchHHHHHHHHHHHHHh
Confidence 112222 23444456678888888877665552222 23333455445445555443
No 306
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=30.15 E-value=2.5e+02 Score=35.41 Aligned_cols=62 Identities=11% Similarity=0.085 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcC-CchHHHHHHHHHhhc
Q 000134 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTR-RSDGAIAELQQNLLN 1410 (2096)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g-~~~~Ai~~L~~~i~~ 1410 (2096)
....|+++++..|++|..+.|...+.+| ... .....+..|.+.|..| +...|..+.+.+++.
T Consensus 285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~ 349 (493)
T 2uy1_A 285 LDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK 349 (493)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 4578999999999999999998888888 332 2357788899999877 589999999998864
No 307
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=29.63 E-value=2.4e+02 Score=29.85 Aligned_cols=64 Identities=6% Similarity=0.021 Sum_probs=48.6
Q ss_pred CChhhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhcc
Q 000134 632 PSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGE 697 (2096)
Q Consensus 632 p~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~~l~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e 697 (2096)
|+....-++-..++.. +...++.++.+.+|++|-|+.|.++||+=|..+.+.....+|.-+.+.
T Consensus 17 ~dw~~~leicD~I~~~--~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~ 80 (148)
T 1mhq_A 17 QDWSAIQNFCEQVNTD--PNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKF 80 (148)
T ss_dssp CCHHHHHHHHHHHHHS--SHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSH
T ss_pred cCHHHHHHHHHHHHcC--CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhH
Confidence 5555545565666543 245789999999999999999999999999988888776677666543
No 308
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=28.84 E-value=3.1e+02 Score=35.28 Aligned_cols=76 Identities=9% Similarity=-0.019 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHccCCCchhhhhhHHHHHHhcc--ChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcC-ChhhHHHhh
Q 000134 1130 WAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMC--HLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLG-RWDLMDEYL 1206 (2096)
Q Consensus 1130 W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LG--q~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg-~Wd~l~~~l 1206 (2096)
+++|+.+|+.+++..|++...-.+.--++.++| .|+..+..++.++...|.....|..-+ -+.=++| .|+.--+|.
T Consensus 89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~-~~l~~l~~~~~~el~~~ 167 (567)
T 1dce_A 89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRR-FVAAQAAVAPAEELAFT 167 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHH-HHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHH-HHHHHcCCChHHHHHHH
Confidence 889999999999999988765555555677888 668777777777665555444444222 1222355 555443443
No 309
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=28.83 E-value=1.9e+02 Score=36.42 Aligned_cols=71 Identities=10% Similarity=0.094 Sum_probs=47.6
Q ss_pred HHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccch-hHHH-HHHHHHHhhCCCCcchHHHHHHHHHHHhhhh
Q 000134 241 LLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQ-HFLF-LLILLVEQLDNPHVTVRMNASRLIRKSCFFH 312 (2096)
Q Consensus 241 ~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e-~~~~-~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~ 312 (2096)
.+..+-+.+. ..+..+++-..-+++.+......+.+ +.-. ++=.|++.|.+.+.-++-.|..-|.+|+..+
T Consensus 380 ~i~~Lv~LL~-~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 380 CLQTLLQHLK-SHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHHHHHSS-CSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred cHHHHHHHHc-CCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 3445555444 35566899888888888522222222 2222 2345888888999999999999999998765
No 310
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=26.17 E-value=85 Score=36.80 Aligned_cols=51 Identities=10% Similarity=0.050 Sum_probs=33.1
Q ss_pred cccCCCCCceeeecCCCcEEeeeccccc--cccCCCCCCCCCCccccHHHHHh
Q 000134 1931 GLGDRHGENILFDSTTGDCVHVDFSCLF--DKGLLLEKPELVPFRLTQNMIDG 1981 (2096)
Q Consensus 1931 GLGDRH~eNILld~~tG~vvHIDF~~~F--~kg~~l~~pE~VPFRLT~nmv~~ 1981 (2096)
-=||-.|+|||++...+.+.=+|||..- ..+......-..|.=..|++...
T Consensus 152 vH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~y~aPE~~~~ 204 (330)
T 3nsz_A 152 MHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVD 204 (330)
T ss_dssp ECCCCSGGGEEEETTTTEEEECCCTTCEECCTTCCCCSCCSCGGGCCHHHHTT
T ss_pred eeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCCCccccccccccccChhhhcC
Confidence 3489999999999766699999999763 23322222223344455666543
No 311
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=26.00 E-value=2e+02 Score=27.50 Aligned_cols=64 Identities=13% Similarity=-0.075 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHH-HcCC--hHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcC
Q 000134 1348 VGNCWLQYAKLCR-LAGH--YETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNK 1411 (2096)
Q Consensus 1348 ~~~~WL~~AklAR-Kag~--~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~ 1411 (2096)
..+.|...|..-- .+|. .+.|...+.+|.+.. .+.+.+-.+......|+..+||...+..+...
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3567777777663 3333 789999999998875 45688888999999999999999999988743
No 312
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=25.88 E-value=3e+02 Score=30.98 Aligned_cols=65 Identities=15% Similarity=0.144 Sum_probs=50.5
Q ss_pred CCChhhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhcc
Q 000134 631 LPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGE 697 (2096)
Q Consensus 631 Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~~l~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e 697 (2096)
=|+....-+|-..++. +....++.++.+.+|++|.|+.|.++||.=|..+.+.-...++..+.+.
T Consensus 20 ~~dw~~~leicd~i~~--~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~ 84 (220)
T 1dvp_A 20 EPDWPSILLICDEINQ--KDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTK 84 (220)
T ss_dssp SCCHHHHHHHHHHHHT--TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSH
T ss_pred CcCHHHHHHHHHhhcC--CCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhH
Confidence 3566655666666663 2347899999999999999999999999999999888777677655443
No 313
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=25.87 E-value=37 Score=39.06 Aligned_cols=51 Identities=18% Similarity=0.230 Sum_probs=34.0
Q ss_pred ccCCCCCceeeecCCCcEEeeeccccccccCCCCCCCCCCc--cccHHHHHhhcCCCccc
Q 000134 1932 LGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPF--RLTQNMIDGLGITGYEG 1989 (2096)
Q Consensus 1932 LGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l~~pE~VPF--RLT~nmv~~mG~~G~eG 1989 (2096)
=||=+|+|||++. ++.=||||.+... ..|....| |=..|+.+++.-.|+..
T Consensus 194 HrDlkp~NILl~~---~~~liDFG~a~~~----~~~~~~~~l~rd~~~~~~~f~~~g~~~ 246 (258)
T 1zth_A 194 HADLSEYNIMYID---KVYFIDMGQAVTL----RHPMAESYLERDVRNIIRFFSKYGVKA 246 (258)
T ss_dssp CSSCSTTSEEESS---SEEECCCTTCEET----TSTTHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred eCCCCHHHEEEcC---cEEEEECcccccC----CCccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3899999999986 8999999987543 23433222 22346667776666654
No 314
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=25.68 E-value=1.3e+02 Score=34.66 Aligned_cols=70 Identities=19% Similarity=0.305 Sum_probs=51.4
Q ss_pred HHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHH
Q 000134 655 DQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCAD 734 (2096)
Q Consensus 655 ~~l~~~~~~l~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~ 734 (2096)
+.+..+..-+..++..|+..||.-|.++++...+.+.. ..+..++..++...... ++.+...+.+
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~----------~~~e~~Ld~iI~llk~~-----dEkval~A~r 97 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRM----------MVLERHLDVFINALSQE-----NEKVTIKALR 97 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHH----------HHHHHHHHHHHHTCCST-----THHHHHHHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccH----------HHHHHHHHHHHHHHhcc-----chhHHHHHHH
Confidence 35666777788899999999999999999886544443 24555666666554332 4799999999
Q ss_pred hhccc
Q 000134 735 CLGAL 739 (2096)
Q Consensus 735 CLG~I 739 (2096)
|||.|
T Consensus 98 ~L~~L 102 (265)
T 3b2a_A 98 ALGYL 102 (265)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99965
No 315
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=24.48 E-value=1.9e+02 Score=35.00 Aligned_cols=155 Identities=12% Similarity=0.075 Sum_probs=90.1
Q ss_pred HHHHHhhcccCccchhhHHHHHHHHHHccCCch-hhhhhhhHHHHHHHHHhhcccH----HHHHHHHHHHhHhhhhhhhh
Q 000134 150 NIYFEFLYDESSEEVQLSCVRVIRRILVHGTRD-VLLKTRSEWIKCIEFLLLNKRK----AIRDAFCTQIGYFLQDTVLS 224 (2096)
Q Consensus 150 ~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~-~~~~~~~~w~~~~~~~~~~~~r----~vR~a~~~~~~~~~~~~~~~ 224 (2096)
+.+.++|....+.+++-.+..+|..+-.|...+ ........-+..|-.+|.+++. .|++.++.++..+-
T Consensus 173 p~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs------ 246 (354)
T 3nmw_A 173 KALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVS------ 246 (354)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHH------
Confidence 346676666667788888888888887765432 1110011123344455555443 58888888877632
Q ss_pred hhccCcccccchh--hHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHH--HHHHHHHHhhCCCCcchHHH
Q 000134 225 SLFLDENASSRSN--ELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFL--FLLILLVEQLDNPHVTVRMN 300 (2096)
Q Consensus 225 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~--~~l~~Li~~L~~~n~~v~~~ 300 (2096)
.+..+++. .+.. +...+..+-+.+. ..++.+++-..-+++.+......+.+.+. -++=.|++.|.+.+.-++-.
T Consensus 247 ~~~a~~~~-~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~ 324 (354)
T 3nmw_A 247 SLIATNED-HRQILRENNCLQTLLQHLK-SHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMG 324 (354)
T ss_dssp HHHTTCHH-HHHHHHTTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHH
T ss_pred hhccCCHH-HHHHHHHcCCHHHHHHHHc-CCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHH
Confidence 11111111 1110 1124455555444 35566899888888888422111222221 12445888899999999999
Q ss_pred HHHHHHHHhhhh
Q 000134 301 ASRLIRKSCFFH 312 (2096)
Q Consensus 301 A~~~i~~l~~~~ 312 (2096)
|..-|.+++...
T Consensus 325 A~~aL~nL~~~~ 336 (354)
T 3nmw_A 325 SAAALRNLMANR 336 (354)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 999999998764
No 316
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=23.29 E-value=3.6e+02 Score=32.71 Aligned_cols=118 Identities=10% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHH
Q 000134 204 KAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLL 283 (2096)
Q Consensus 204 r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l 283 (2096)
|..|.+.-+.+...+ .|.+-+....-..|++-++ +-+.+|..++--+...+-.+ .....|.+ ++.
T Consensus 42 ~kc~~~l~kll~l~~---------~G~~f~~~e~t~lf~~v~k--l~~s~d~~lKrLvYLyl~~~---~~~~~e~i-Lv~ 106 (355)
T 3tjz_B 42 RKCAHILTKILYLIN---------QGEHLGTTEATEAFFAMTK--LFQSNDPTLRRMCYLTIKEM---SCIAEDVI-IVT 106 (355)
T ss_dssp HHHHHHHHHHHHHHH---------HTCCCCHHHHHHHHHHHHG--GGGCCCHHHHHHHHHHHHHH---TTTSSCGG-GGH
T ss_pred HHHHHHHHHHHHHHH---------CCCCCchhHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHh---CCCHHHHH-HHH
Q ss_pred HHHHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccchhhhhhhhhhHHHHHHhcCchHHHHHHH
Q 000134 284 ILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFA 350 (2096)
Q Consensus 284 ~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~rp~~~~~~~ 350 (2096)
=.|.--|.|+|+++||.|.+-+.++ ....+.+.+.+++.+.|..+---++.-|
T Consensus 107 Nsl~kDl~~~N~~iR~lALRtL~~I--------------~~~~m~~~l~~~lk~~L~d~~pyVRk~A 159 (355)
T 3tjz_B 107 SSLTKDMTGKEDSYRGPAVRALCQI--------------TDSTMLQAIERYMKQAIVDKVPSVSSSA 159 (355)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHH--------------CCTTTHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred HHHHhhcCCCcHhHHHHHHHHHhcC--------------CCHHHHHHHHHHHHHHcCCCCHHHHHHH
No 317
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=22.89 E-value=3.4e+02 Score=33.15 Aligned_cols=67 Identities=12% Similarity=0.090 Sum_probs=49.7
Q ss_pred ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHH
Q 000134 1381 PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRW 1460 (2096)
Q Consensus 1381 ~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakW 1460 (2096)
|.+.--.|-.+|.+|+.++|+..+++++.-.+ . +-++.++|+-
T Consensus 277 a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~------------------------------------s-~~a~~llG~~ 319 (372)
T 3ly7_A 277 SIIYQIKAVSALVKGKTDESYQAINTGIDLEM------------------------------------S-WLNYVLLGKV 319 (372)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC------------------------------------C-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC------------------------------------C-HHHHHHHHHH
Confidence 33444455678889999999999999976211 0 3356677776
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhccch
Q 000134 1461 IHYTGQKQKEDVITLYSRVRELQPMW 1486 (2096)
Q Consensus 1461 l~~~~~~~~~~i~~~Y~~a~~l~~~w 1486 (2096)
....|+ .++.+..|.+|+.+.|.-
T Consensus 320 ~~~~G~--~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 320 YEMKGM--NREAADAYLTAFNLRPGA 343 (372)
T ss_dssp HHHTTC--HHHHHHHHHHHHHHSCSH
T ss_pred HHHCCC--HHHHHHHHHHHHhcCCCc
Confidence 666776 889999999999999954
No 318
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=22.38 E-value=5.7e+02 Score=32.84 Aligned_cols=133 Identities=6% Similarity=-0.034 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHhhcCCC--hHHHHHHHHHHHcCC--chHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccc
Q 000134 1365 YETATRAILEAQASGAP--NVHMEKAKLLWSTRR--SDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSN 1440 (2096)
Q Consensus 1365 ~~~A~~all~a~~~~~~--~~~iE~AKLLW~~g~--~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1440 (2096)
++.|...+.+|....+. .+..-++-++-..|. ..+|+...+++++..+. |
T Consensus 89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-------------------N------- 142 (567)
T 1dce_A 89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-------------------N------- 142 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-------------------C-------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-------------------c-------
Confidence 67777777777666543 455566667777784 48999999988763211 0
Q ss_pred cccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhh
Q 000134 1441 TQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKR 1520 (2096)
Q Consensus 1441 ~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~~~~~~e~~~~~g~~~~~ 1520 (2096)
..|+.-. .|.-..-....++.++.|.++++.+|....+|++.|.-+.++... .+....|+..
T Consensus 143 ----------~~aW~~R-~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~-----~~~~~~~~~~-- 204 (567)
T 1dce_A 143 ----------FHCWDYR-RFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ-----PDSGPQGRLP-- 204 (567)
T ss_dssp ----------HHHHHHH-HHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCC-----CCSSSCCSSC--
T ss_pred ----------ccHHHHH-HHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccc-----cccccccccc--
Confidence 1122222 233322222467889999999999999999999998887665311 0000001100
Q ss_pred hhchHHHHHHHHHHhhccCCcc
Q 000134 1521 WWFYVPDVLLFYAKGLHRGHKN 1542 (2096)
Q Consensus 1521 ~~~~l~~ai~~Y~~sl~~g~~~ 1542 (2096)
...+..+++.|-+++...+++
T Consensus 205 -~~~~~eel~~~~~ai~~~P~~ 225 (567)
T 1dce_A 205 -ENVLLKELELVQNAFFTDPND 225 (567)
T ss_dssp -HHHHHHHHHHHHHHHHHCSSC
T ss_pred -HHHHHHHHHHHHHHHhhCCCC
Confidence 123567888888888876653
No 319
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=22.33 E-value=5.5e+02 Score=27.30 Aligned_cols=64 Identities=19% Similarity=0.139 Sum_probs=47.7
Q ss_pred CCChhhhHHHHHHHHHhcCCCCHHHHHHHHHhhccC-CChhHHHHHHHHHHHHHhhcHHHHHHHHhc
Q 000134 631 LPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNH-ENLNVRYMVVCELSKLLKLKSEDVTALING 696 (2096)
Q Consensus 631 Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~~l~~-en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~ 696 (2096)
=|+....-++...++.. ....++.++.+.+|++| .|+.|.++||.=|..+.+.....+|..+.+
T Consensus 31 ~~Dw~~~leicD~I~~~--~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~ 95 (157)
T 1elk_A 31 SEDWALNMEICDIINET--EEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVAS 95 (157)
T ss_dssp SCCHHHHHHHHHHHHHS--SSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTS
T ss_pred CcCHHHHHHHHHHHhCC--CccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhh
Confidence 35655555666666643 34678999999999985 789999999999988888876667765544
No 320
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=21.76 E-value=3.1e+02 Score=28.71 Aligned_cols=72 Identities=11% Similarity=0.090 Sum_probs=51.2
Q ss_pred hcccCCCCCChhhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhcc
Q 000134 624 HIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGE 697 (2096)
Q Consensus 624 ~i~~lp~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~~l~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e 697 (2096)
+-.+...-|+....-++-..++. ++...++..+.+.+|++|.|+.|.++||.=|..+.+.....+|..+.+.
T Consensus 13 AT~~~l~~~dw~~ileicD~I~~--~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~ 84 (140)
T 3ldz_A 13 ATSEMNTAEDWGLILDICDKVGQ--SRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSR 84 (140)
T ss_dssp HTCTTSSSCCHHHHHHHHHHHTT--STTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSH
T ss_pred HcCCCCCCcCHHHHHHHHHHHHC--CCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhH
Confidence 33443334555555555555553 2346789999999999999999999999988888887766677655543
No 321
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=21.31 E-value=6.7e+02 Score=32.52 Aligned_cols=108 Identities=12% Similarity=0.100 Sum_probs=63.8
Q ss_pred HHHHHHHhhcccCccchhhHHHHHHHHHHccCCch--hhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhh
Q 000134 148 LLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRD--VLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSS 225 (2096)
Q Consensus 148 ~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~--~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~ 225 (2096)
+.. +-++|- ..++++|......|.++..+.... ..... --+..|=.+|.+++..|+..++.++..+-
T Consensus 50 i~~-LV~~L~-s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~--G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa------- 118 (584)
T 3l6x_A 50 LPE-VIAMLG-FRLDAVKSNAAAYLQHLCYRNDKVKTDVRKL--KGIPVLVGLLDHPKKEVHLGACGALKNIS------- 118 (584)
T ss_dssp HHH-HHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT--THHHHHHHGGGCSSHHHHHHHHHHHHHHT-------
T ss_pred HHH-HHHHHC-CCCHHHHHHHHHHHHHHHcCChHHHHHHHHc--CCcHHHHHHHCCCCHHHHHHHHHHHHHHH-------
Confidence 444 444554 456789988888999998776533 22222 12334444569999999999999998854
Q ss_pred hccCcccccchh--hHHHHHHHHHHhhhcCChhHHHHHHHHHHHH
Q 000134 226 LFLDENASSRSN--ELKLLDVIKLAFTAADDPLILETLLESTAEL 268 (2096)
Q Consensus 226 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i 268 (2096)
.+.+...+.. +.-.+..+-+.+....++.++|...-++..+
T Consensus 119 --~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nL 161 (584)
T 3l6x_A 119 --FGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNL 161 (584)
T ss_dssp --SSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred --ccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 1000000110 0113444445555566777888876666665
No 322
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=20.81 E-value=3.8e+02 Score=30.32 Aligned_cols=64 Identities=13% Similarity=0.169 Sum_probs=49.2
Q ss_pred CChhhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhcc
Q 000134 632 PSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGE 697 (2096)
Q Consensus 632 p~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~~l~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e 697 (2096)
|+....-++-..++. +....++.++.+.+|++|.|+.|.++||.=|..+.+.-...++..+.+.
T Consensus 24 ~dw~~ileicD~I~~--~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~ 87 (226)
T 3zyq_A 24 TDWESILQICDLIRQ--GDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANK 87 (226)
T ss_dssp CCHHHHHHHHHHHHT--TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSH
T ss_pred cCHHHHHHHHHHHhC--CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccH
Confidence 555555566666654 3456899999999999999999999999988888777666677766554
No 323
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=20.39 E-value=8.9e+02 Score=28.90 Aligned_cols=140 Identities=13% Similarity=0.171 Sum_probs=76.2
Q ss_pred ChhHHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhc----------cccHHHHHHHHHHHhhhcCCChHHHHH---HhhH
Q 000134 380 NDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALH----------QADERRLLSALEFYCIQTGSDNQEIFA---AALP 446 (2096)
Q Consensus 380 ~~~~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~----------~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~ 446 (2096)
++++......|.+.++ ..+.+..|.|+-.+|- .+-|++=.+-..++.+....-...++. +.+.
T Consensus 91 epeVL~l~~tii~kl~----~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fk 166 (321)
T 1w9c_A 91 EPEVLSTMAIIVNKLG----GHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFK 166 (321)
T ss_dssp CTHHHHHHHHHHHHHG----GGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHH
T ss_pred cHHHHHHHHHHHHHHH----HHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHH
Confidence 4445555555555544 5566788999888872 223565444444444332222223333 2233
Q ss_pred HHHHHHHHhhcCCCchhHhhhhcchhHHHHHHhhhccCCCChhhhhHHHHHHHHHHhhhhhc---CCCChHHHHHHHHHH
Q 000134 447 ALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKML---HAEDLSLQKQALKRI 523 (2096)
Q Consensus 447 ~~l~eLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~---~~~~~~~k~~~l~sl 523 (2096)
.+++.++....+.+.+.+.....-..+-++.+++ +++.-..|.+.+++-|+..+=..+. |+.++..+-+.|+.|
T Consensus 167 lvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~---~~~~~~~Fy~~fy~~il~~if~VlTDs~Hk~gF~~q~~iL~~l 243 (321)
T 1w9c_A 167 LVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQ---EEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYM 243 (321)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhc---ChHHHHHHHHHHHHHHHHHHHHHHhCchhhccHHHHHHHHHHH
Confidence 4456666666666655543333333455555543 3345668999999998876543443 445676666666554
Q ss_pred HHH
Q 000134 524 EIL 526 (2096)
Q Consensus 524 ~~l 526 (2096)
-.+
T Consensus 244 f~~ 246 (321)
T 1w9c_A 244 FNL 246 (321)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 324
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=20.37 E-value=5.7e+02 Score=31.58 Aligned_cols=100 Identities=5% Similarity=-0.142 Sum_probs=68.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhc-----CC--Ch---HHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000134 1354 QYAKLCRLAGHYETATRAILEAQAS-----GA--PN---VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2096)
Q Consensus 1354 ~~AklARKag~~~~A~~all~a~~~-----~~--~~---~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~ 1423 (2096)
....-+++.|.++.|.....++... ++ |. ..-.-|.+++.+|+.++|+...++++.-.. .+
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~-~~-------- 362 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYR-IF-------- 362 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HH--------
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHH-HH--------
Confidence 3344577889999998887777543 22 21 233446788999999999999998875210 00
Q ss_pred ccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 000134 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQ 1483 (2096)
Q Consensus 1424 ~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~ 1483 (2096)
...+.+.+|..+..+|.-....|+ .+++...|++|.+..
T Consensus 363 -------------------lg~~Hp~~a~~l~nLa~~~~~~g~--~~eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 363 -------------------FPGSHPVRGVQVMKVGKLQLHQGM--FPQAMKNLRLAFDIM 401 (429)
T ss_dssp -------------------SCSSCHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHH
T ss_pred -------------------cCCCChHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHH
Confidence 112456778888889888777765 677888888887763
Done!