BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000135
(2087 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QXP|A Chain A, Crystal Structure Of A Mu-Like Calpain
pdb|1QXP|B Chain B, Crystal Structure Of A Mu-Like Calpain
Length = 900
Score = 209 bits (531), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 131/366 (35%), Positives = 194/366 (53%), Gaps = 40/366 (10%)
Query: 1706 FTDHEFPPDDQSLYVDPGNPPSKLQVVAEWMRPSEIVKESRLDCQPCLFSGAVNPSDVCQ 1765
F D FPP SL P S +W RP+E++ P +D+CQ
Sbjct: 46 FQDPAFPPVSHSLGFKELGPNSSKTYGIKWKRPTELL------SNPQFIVDGATRTDICQ 99
Query: 1766 GRLGDCWFLSAVAVLTEVSQISEVII----TPEYNEEGIYTVRFCIQGEWVPVVVDDWIP 1821
G LGD W L+A+A LT I ++ + + GI+ + GEWV VVVDD +P
Sbjct: 100 GALGDSWLLAAIASLTLNETILHRVVPYGQSFQEGYAGIFHFQLWQFGEWVDVVVDDLLP 159
Query: 1822 CESPGKPAFATSKKGHELWVSILEKAYAKLHGSYEALEGGLVQDALVDLTGGAGEEIDMR 1881
+ GK F S +G+E W ++LEKAYAK++GSYEAL GG +A D TGG E D++
Sbjct: 160 TKD-GKLVFVHSAQGNEFWSALLEKAYAKVNGSYEALSGGCTSEAFEDFTGGVTEWYDLQ 218
Query: 1882 SAQAQIDLASGRLWSQLLRFKQEGFLLGAGSPSGSDVH----ISSSGIVQGHAYSILQVR 1937
A + L+ +L+ + G LLG S + SD+ I+ +V+GHAYS+ +
Sbjct: 219 KAPSD-------LYQIILKALERGSLLGC-SINISDIRDLEAITFKNLVRGHAYSVTDAK 270
Query: 1938 EV--DGHK--LVQIRNPWANEVEWNGPWSDSSPEWTDRMKHKLKHVP-QSKDGIFWMSWQ 1992
+V G + L+++RNPW EVEW GPWSD+S EW ++ + + + +DG FWMS++
Sbjct: 271 QVTYQGQRVNLIRMRNPWG-EVEWKGPWSDNSYEWNKVDPYEREQLRVKMEDGEFWMSFR 329
Query: 1993 DFQIHFRSIYVCRVYPSEMRYSVHGQW----------RGYSAGGCQDY-ASWNQNPQFRL 2041
DF F + +C + P ++ W RG +AGGC++Y A++ NPQF++
Sbjct: 330 DFIREFTKLEICNLTPDALKSRTLRNWNTTFYEGTWRRGSTAGGCRNYPATFWVNPQFKI 389
Query: 2042 RASGSD 2047
R D
Sbjct: 390 RLEEVD 395
>pdb|1KFX|L Chain L, Crystal Structure Of Human M-Calpain Form I
pdb|1KFU|L Chain L, Crystal Structure Of Human M-Calpain Form Ii
Length = 699
Score = 199 bits (507), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 123/361 (34%), Positives = 185/361 (51%), Gaps = 40/361 (11%)
Query: 1706 FTDHEFPPDDQSLYVDPGNPPSKLQVVAEWMRPSEIVKESRLDCQPCLFSGAVNPSDVCQ 1765
F D FP +L P S W RP+EI + P G +D+CQ
Sbjct: 45 FQDPSFPAIPSALGFKELGPYSSKTRGMRWKRPTEICAD------PQFIIGGATRTDICQ 98
Query: 1766 GRLGDCWFLSAVAVLTEVSQISEVII----TPEYNEEGIYTVRFCIQGEWVPVVVDDWIP 1821
G LGDCW L+A+A LT +I ++ + + N GI+ +F GEWV VVVDD +P
Sbjct: 99 GALGDCWLLAAIASLTLNEEILARVVPLNQSFQENYAGIFHFQFWQYGEWVEVVVDDRLP 158
Query: 1822 CESPGKPAFATSKKGHELWVSILEKAYAKLHGSYEALEGGLVQDALVDLTGGAGEEIDMR 1881
+ G+ F S +G E W ++LEKAYAK++G YEAL GG + D TGG E +++
Sbjct: 159 TKD-GELLFVHSAEGSEFWSALLEKAYAKINGCYEALSGGATTEGFEDFTGGIAEWYELK 217
Query: 1882 SAQAQIDLASGRLWSQLLRFKQEGFLLGAG---SPSGSDVHISSSGIVQGHAYSILQVRE 1938
L+ + + Q+G LLG + + I+ +V+GHAYS+ E
Sbjct: 218 KPPPN-------LFKIIQKALQKGSLLGCSIDITSAADSEAITFQKLVKGHAYSVTGAEE 270
Query: 1939 VDGH----KLVQIRNPWANEVEWNGPWSDSSPEW-TDRMKHKLKHVPQSKDGIFWMSWQD 1993
V+ + KL++IRNPW EVEW G W+D+ P W T + + + + +DG FWMS+ D
Sbjct: 271 VESNGSLQKLIRIRNPWG-EVEWTGRWNDNCPSWNTIDPEERERLTRRHEDGEFWMSFSD 329
Query: 1994 FQIHFRSIYVCRVYPSEMRYSVHGQW----------RGYSAGGCQDYAS--WNQNPQFRL 2041
F H+ + +C + P + + +W RG +AGGC++Y + W NPQ+ +
Sbjct: 330 FLRHYSRLEICNLTPDTLTSDTYKKWKLTKMDGNWRRGSTAGGCRNYPNTFW-MNPQYLI 388
Query: 2042 R 2042
+
Sbjct: 389 K 389
>pdb|3DF0|A Chain A, Calcium-Dependent Complex Between M-Calpain And Calpastatin
pdb|3BOW|A Chain A, Structure Of M-Calpain In Complex With Calpastatin
Length = 714
Score = 195 bits (495), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 122/361 (33%), Positives = 183/361 (50%), Gaps = 40/361 (11%)
Query: 1706 FTDHEFPPDDQSLYVDPGNPPSKLQVVAEWMRPSEIVKESRLDCQPCLFSGAVNPSDVCQ 1765
F D FP SL P S EW RP+EI + P G +D+CQ
Sbjct: 46 FQDPSFPALPSSLGFKELGPYSSKTRGIEWKRPTEICAD------PQFIIGGATRTDICQ 99
Query: 1766 GRLGDCWFLSAVAVLTEVSQISEVII----TPEYNEEGIYTVRFCIQGEWVPVVVDDWIP 1821
G LGD W L+A+A LT +I ++ + + N GI+ +F GEWV VVVDD +P
Sbjct: 100 GALGDSWLLAAIASLTLNEEILARVVPLDQSFQENYAGIFHFQFWQYGEWVEVVVDDRLP 159
Query: 1822 CESPGKPAFATSKKGHELWVSILEKAYAKLHGSYEALEGGLVQDALVDLTGGAGEEIDMR 1881
+ G+ F S +G E W ++LEKAYAK++G YEAL GG + D TGG E ++R
Sbjct: 160 TKD-GELLFVHSAEGSEFWSALLEKAYAKINGCYEALSGGATTEGFEDFTGGIAEWYELR 218
Query: 1882 SAQAQIDLASGRLWSQLLRFKQEGFLLGAG---SPSGSDVHISSSGIVQGHAYSILQVRE 1938
L+ + + ++G LLG + + ++ +V+GHAYS+ E
Sbjct: 219 KPPPN-------LFKIIQKALEKGSLLGCSIDITSAADSEAVTYQKLVKGHAYSVTGAEE 271
Query: 1939 VDG----HKLVQIRNPWANEVEWNGPWSDSSPEW-TDRMKHKLKHVPQSKDGIFWMSWQD 1993
V+ KL++IRNPW +VEW G W+D+ P W T + + + +DG FWMS+ D
Sbjct: 272 VESSGSLQKLIRIRNPWG-QVEWTGKWNDNCPSWNTVDPEVRANLTERQEDGEFWMSFSD 330
Query: 1994 FQIHFRSIYVCRVYPSEMRYSVHGQW----------RGYSAGGCQDYAS--WNQNPQFRL 2041
F H+ + +C + P + + +W RG +AGGC++Y + W NPQ+ +
Sbjct: 331 FLRHYSRLEICNLTPDTLTCDSYKKWKLTKMDGNWRRGSTAGGCRNYPNTFW-MNPQYLI 389
Query: 2042 R 2042
+
Sbjct: 390 K 390
>pdb|1U5I|A Chain A, Crystal Structure Analysis Of Rat M-Calpain Mutant Lys10 Thr
Length = 700
Score = 195 bits (495), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 122/361 (33%), Positives = 183/361 (50%), Gaps = 40/361 (11%)
Query: 1706 FTDHEFPPDDQSLYVDPGNPPSKLQVVAEWMRPSEIVKESRLDCQPCLFSGAVNPSDVCQ 1765
F D FP SL P S EW RP+EI + P G +D+CQ
Sbjct: 46 FQDPSFPALPSSLGFKELGPYSSKTRGIEWKRPTEICAD------PQFIIGGATRTDICQ 99
Query: 1766 GRLGDCWFLSAVAVLTEVSQISEVII----TPEYNEEGIYTVRFCIQGEWVPVVVDDWIP 1821
G LGD W L+A+A LT +I ++ + + N GI+ +F GEWV VVVDD +P
Sbjct: 100 GALGDSWLLAAIASLTLNEEILARVVPLDQSFQENYAGIFHFQFWQYGEWVEVVVDDRLP 159
Query: 1822 CESPGKPAFATSKKGHELWVSILEKAYAKLHGSYEALEGGLVQDALVDLTGGAGEEIDMR 1881
+ G+ F S +G E W ++LEKAYAK++G YEAL GG + D TGG E ++R
Sbjct: 160 TKD-GELLFVHSAEGSEFWSALLEKAYAKINGCYEALSGGATTEGFEDFTGGIAEWYELR 218
Query: 1882 SAQAQIDLASGRLWSQLLRFKQEGFLLGAG---SPSGSDVHISSSGIVQGHAYSILQVRE 1938
L+ + + ++G LLG + + ++ +V+GHAYS+ E
Sbjct: 219 KPPPN-------LFKIIQKALEKGSLLGCSIDITSAADSEAVTYQKLVKGHAYSVTGAEE 271
Query: 1939 VDG----HKLVQIRNPWANEVEWNGPWSDSSPEW-TDRMKHKLKHVPQSKDGIFWMSWQD 1993
V+ KL++IRNPW +VEW G W+D+ P W T + + + +DG FWMS+ D
Sbjct: 272 VESSGSLQKLIRIRNPWG-QVEWTGKWNDNCPSWNTVDPEVRANLTERQEDGEFWMSFSD 330
Query: 1994 FQIHFRSIYVCRVYPSEMRYSVHGQW----------RGYSAGGCQDYAS--WNQNPQFRL 2041
F H+ + +C + P + + +W RG +AGGC++Y + W NPQ+ +
Sbjct: 331 FLRHYSRLEICNLTPDTLTCDSYKKWKLTKMDGNWRRGSTAGGCRNYPNTFW-MNPQYLI 389
Query: 2042 R 2042
+
Sbjct: 390 K 390
>pdb|1DF0|A Chain A, Crystal Structure Of M-Calpain
Length = 700
Score = 195 bits (495), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 122/361 (33%), Positives = 183/361 (50%), Gaps = 40/361 (11%)
Query: 1706 FTDHEFPPDDQSLYVDPGNPPSKLQVVAEWMRPSEIVKESRLDCQPCLFSGAVNPSDVCQ 1765
F D FP SL P S EW RP+EI + P G +D+CQ
Sbjct: 46 FQDPSFPALPSSLGFKELGPYSSKTRGIEWKRPTEICAD------PQFIIGGATRTDICQ 99
Query: 1766 GRLGDCWFLSAVAVLTEVSQISEVII----TPEYNEEGIYTVRFCIQGEWVPVVVDDWIP 1821
G LGD W L+A+A LT +I ++ + + N GI+ +F GEWV VVVDD +P
Sbjct: 100 GALGDSWLLAAIASLTLNEEILARVVPLDQSFQENYAGIFHFQFWQYGEWVEVVVDDRLP 159
Query: 1822 CESPGKPAFATSKKGHELWVSILEKAYAKLHGSYEALEGGLVQDALVDLTGGAGEEIDMR 1881
+ G+ F S +G E W ++LEKAYAK++G YEAL GG + D TGG E ++R
Sbjct: 160 TKD-GELLFVHSAEGSEFWSALLEKAYAKINGCYEALSGGATTEGFEDFTGGIAEWYELR 218
Query: 1882 SAQAQIDLASGRLWSQLLRFKQEGFLLGAG---SPSGSDVHISSSGIVQGHAYSILQVRE 1938
L+ + + ++G LLG + + ++ +V+GHAYS+ E
Sbjct: 219 KPPPN-------LFKIIQKALEKGSLLGCSIDITSAADSEAVTYQKLVKGHAYSVTGAEE 271
Query: 1939 VDG----HKLVQIRNPWANEVEWNGPWSDSSPEW-TDRMKHKLKHVPQSKDGIFWMSWQD 1993
V+ KL++IRNPW +VEW G W+D+ P W T + + + +DG FWMS+ D
Sbjct: 272 VESSGSLQKLIRIRNPWG-QVEWTGKWNDNCPSWNTVDPEVRANLTERQEDGEFWMSFSD 330
Query: 1994 FQIHFRSIYVCRVYPSEMRYSVHGQW----------RGYSAGGCQDYAS--WNQNPQFRL 2041
F H+ + +C + P + + +W RG +AGGC++Y + W NPQ+ +
Sbjct: 331 FLRHYSRLEICNLTPDTLTCDSYKKWKLTKMDGNWRRGSTAGGCRNYPNTFW-MNPQYLI 389
Query: 2042 R 2042
+
Sbjct: 390 K 390
>pdb|1TL9|A Chain A, High Resolution Crystal Structure Of Calpain I Protease Core
In Complex With Leupeptin
pdb|1TLO|A Chain A, High Resolution Crystal Structure Of Calpain I Protease Core
In Complex With E64
pdb|2G8E|A Chain A, Calpain 1 Proteolytic Core In Complex With Snj-1715, A
Cyclic Hemiacetal-Type Inhibitor
pdb|2G8J|A Chain A, Calpain 1 Proteolytic Core In Complex With Snj-1945, A
Alpha-Ketoamide-Type Inhibitor.
pdb|2NQG|A Chain A, Calpain 1 Proteolytic Core Inactivated By Wr18(s,s), An
Epoxysuccinyl-type Inhibitor.
pdb|2NQI|A Chain A, Calpain 1 Proteolytic Core Inactivated By Wr13(R,R), An
Epoxysuccinyl-Type Inhibitor.
pdb|2R9C|A Chain A, Calpain 1 Proteolytic Core Inactivated By Zlak-3001, An
Alpha- Ketoamide
pdb|2R9F|A Chain A, Calpain 1 Proteolytic Core Inactivated By Zlak-3002, An
Alpha- Ketoamide
Length = 339
Score = 188 bits (478), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 117/316 (37%), Positives = 171/316 (54%), Gaps = 29/316 (9%)
Query: 1706 FTDHEFPPDDQSLYVDPGNPPSKLQVVAEWMRPSEIVKESRLDCQPCLFSGAVNPSDVCQ 1765
F D FPP SL P S +W RP+E++ P +D+CQ
Sbjct: 31 FQDDAFPPVSHSLGFKELGPNSSKTYGIKWKRPTELLS------NPQFIVDGATRTDICQ 84
Query: 1766 GRLGDCWFLSAVAVLTEVSQISEVII----TPEYNEEGIYTVRFCIQGEWVPVVVDDWIP 1821
G LGDCW L+A+A LT I ++ + + GI+ + GEWV VVVDD +P
Sbjct: 85 GALGDCWLLAAIASLTLNETILHRVVPYGQSFQEGYAGIFHFQLWQFGEWVDVVVDDLLP 144
Query: 1822 CESPGKPAFATSKKGHELWVSILEKAYAKLHGSYEALEGGLVQDALVDLTGGAGEEIDMR 1881
+ GK F S +G+E W ++LEKAYAK++GSYEAL GG +A D TGG E D++
Sbjct: 145 TKD-GKLVFVHSAQGNEFWSALLEKAYAKVNGSYEALSGGCTSEAFEDFTGGVTEWYDLQ 203
Query: 1882 SAQAQIDLASGRLWSQLLRFKQEGFLLGAGSPSGSDVH----ISSSGIVQGHAYSILQVR 1937
A + L+ +L+ + G LLG S + SD+ I+ +V+GHAYS+ +
Sbjct: 204 KAPSD-------LYQIILKALERGSLLGC-SINISDIRDLEAITFKNLVRGHAYSVTDAK 255
Query: 1938 EV--DGHK--LVQIRNPWANEVEWNGPWSDSSPEWTDRMKHKLKHVP-QSKDGIFWMSWQ 1992
+V G + L+++RNPW EVEW GPWSD+S EW ++ + + + +DG FWMS++
Sbjct: 256 QVTYQGQRVNLIRMRNPWG-EVEWKGPWSDNSYEWNKVDPYEREQLRVKMEDGEFWMSFR 314
Query: 1993 DFQIHFRSIYVCRVYP 2008
DF F + +C + P
Sbjct: 315 DFIREFTKLEICNLTP 330
>pdb|2ARY|A Chain A, Catalytic Domain Of Human Calpain-1
pdb|2ARY|B Chain B, Catalytic Domain Of Human Calpain-1
Length = 351
Score = 186 bits (471), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 114/319 (35%), Positives = 167/319 (52%), Gaps = 27/319 (8%)
Query: 1706 FTDHEFPPDDQSLYVDPGNPPSKLQVVAEWMRPSEIVKESRLDCQPCLFSGAVNPSDVCQ 1765
F D FPP QSL P S +W RP+E++ P +D+CQ
Sbjct: 47 FRDEAFPPVPQSLGYKDLGPNSSKTYGIKWKRPTELL------SNPQFIVDGATRTDICQ 100
Query: 1766 GRLGDCWFLSAVAVLTEVSQISEVIITPEYNEEGIYTVRFCIQ----GEWVPVVVDDWIP 1821
G LGDCW L+A+A LT + ++ + + Y F Q GEWV VVVDD +P
Sbjct: 101 GALGDCWLLAAIASLTLNDTLLHRVVPHGQSFQNGYAGIFHFQLWQFGEWVDVVVDDLLP 160
Query: 1822 CESPGKPAFATSKKGHELWVSILEKAYAKLHGSYEALEGGLVQDALVDLTGGAGEEIDMR 1881
+ GK F S +G+E W ++LEKAYAK++GSYEAL GG + D TGG E ++R
Sbjct: 161 IKD-GKLVFVHSAEGNEFWSALLEKAYAKVNGSYEALSGGSTSEGFEDFTGGVTEWYELR 219
Query: 1882 SAQAQIDLASGRLWSQLLRFKQEGFLLGAGSPSGSDVH---ISSSGIVQGHAYSILQVRE 1938
A + L+ +L+ + G LLG S + I+ +V+GHAYS+ ++
Sbjct: 220 KAPSD-------LYQIILKALERGSLLGCSIDISSVLDMEAITFKKLVKGHAYSVTGAKQ 272
Query: 1939 VDGH----KLVQIRNPWANEVEWNGPWSDSSPEWTDRMKHKLKHVP-QSKDGIFWMSWQD 1993
V+ L+++RNPW EVEW G WSDSS EW + ++ + + +DG FWMS++D
Sbjct: 273 VNYRGQVVSLIRMRNPWG-EVEWTGAWSDSSSEWNNVDPYERDQLRVKMEDGEFWMSFRD 331
Query: 1994 FQIHFRSIYVCRVYPSEMR 2012
F F + +C + P ++
Sbjct: 332 FMREFTRLEICNLTPDALK 350
>pdb|1KXR|A Chain A, Crystal Structure Of Calcium-Bound Protease Core Of Calpain
I
pdb|1KXR|B Chain B, Crystal Structure Of Calcium-Bound Protease Core Of Calpain
I
Length = 339
Score = 185 bits (470), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 116/316 (36%), Positives = 170/316 (53%), Gaps = 29/316 (9%)
Query: 1706 FTDHEFPPDDQSLYVDPGNPPSKLQVVAEWMRPSEIVKESRLDCQPCLFSGAVNPSDVCQ 1765
F D FPP SL P S +W RP+E++ P +D+CQ
Sbjct: 31 FQDDAFPPVSHSLGFKELGPNSSKTYGIKWKRPTELL------SNPQFIVDGATRTDICQ 84
Query: 1766 GRLGDCWFLSAVAVLTEVSQISEVII----TPEYNEEGIYTVRFCIQGEWVPVVVDDWIP 1821
G LGD W L+A+A LT I ++ + + GI+ + GEWV VVVDD +P
Sbjct: 85 GALGDSWLLAAIASLTLNETILHRVVPYGQSFQEGYAGIFHFQLWQFGEWVDVVVDDLLP 144
Query: 1822 CESPGKPAFATSKKGHELWVSILEKAYAKLHGSYEALEGGLVQDALVDLTGGAGEEIDMR 1881
+ GK F S +G+E W ++LEKAYAK++GSYEAL GG +A D TGG E D++
Sbjct: 145 TKD-GKLVFVHSAQGNEFWSALLEKAYAKVNGSYEALSGGCTSEAFEDFTGGVTEWYDLQ 203
Query: 1882 SAQAQIDLASGRLWSQLLRFKQEGFLLGAGSPSGSDVH----ISSSGIVQGHAYSILQVR 1937
A + L+ +L+ + G LLG S + SD+ I+ +V+GHAYS+ +
Sbjct: 204 KAPSD-------LYQIILKALERGSLLGC-SINISDIRDLEAITFKNLVRGHAYSVTDAK 255
Query: 1938 EV--DGHK--LVQIRNPWANEVEWNGPWSDSSPEWTDRMKHKLKHVP-QSKDGIFWMSWQ 1992
+V G + L+++RNPW EVEW GPWSD+S EW ++ + + + +DG FWMS++
Sbjct: 256 QVTYQGQRVNLIRMRNPWG-EVEWKGPWSDNSYEWNKVDPYEREQLRVKMEDGEFWMSFR 314
Query: 1993 DFQIHFRSIYVCRVYP 2008
DF F + +C + P
Sbjct: 315 DFIREFTKLEICNLTP 330
>pdb|1ZCM|A Chain A, Human Calpain Protease Core Inhibited By Zllych2f
Length = 321
Score = 184 bits (466), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 114/313 (36%), Positives = 165/313 (52%), Gaps = 27/313 (8%)
Query: 1706 FTDHEFPPDDQSLYVDPGNPPSKLQVVAEWMRPSEIVKESRLDCQPCLFSGAVNPSDVCQ 1765
F D FPP QSL P S +W RP+E++ P +D+CQ
Sbjct: 24 FRDEAFPPVPQSLGYKDLGPNSSKTYGIKWKRPTELL------SNPQFIVDGATRTDICQ 77
Query: 1766 GRLGDCWFLSAVAVLTEVSQISEVIITPEYNEEGIYTVRFCIQ----GEWVPVVVDDWIP 1821
G LGDCW L+A+A LT + ++ + + Y F Q GEWV VVVDD +P
Sbjct: 78 GALGDCWLLAAIASLTLNDTLLHRVVPHGQSFQNGYAGIFHFQLWQFGEWVDVVVDDLLP 137
Query: 1822 CESPGKPAFATSKKGHELWVSILEKAYAKLHGSYEALEGGLVQDALVDLTGGAGEEIDMR 1881
+ GK F S +G+E W ++LEKAYAK++GSYEAL GG +A D TGG E ++R
Sbjct: 138 IKD-GKLVFVHSAEGNEFWSALLEKAYAKVNGSYEALSGGSTSEAFEDFTGGVTEWYELR 196
Query: 1882 SAQAQIDLASGRLWSQLLRFKQEGFLLGAGSPSGSDVH---ISSSGIVQGHAYSILQVRE 1938
A + L+ +L+ + G LLG S + I+ +V+GHAYS+ ++
Sbjct: 197 KAPSD-------LYQIILKALERGSLLGCSIDISSVLDMEAITFKKLVKGHAYSVTGAKQ 249
Query: 1939 VDGH----KLVQIRNPWANEVEWNGPWSDSSPEWTDRMKHKLKHVP-QSKDGIFWMSWQD 1993
V+ L+++RNPW EVEW G WSDSS EW + ++ + + +DG FWMS++D
Sbjct: 250 VNYRGQVVSLIRMRNPWG-EVEWTGAWSDSSSEWNNVDPYERDQLRVKMEDGEFWMSFRD 308
Query: 1994 FQIHFRSIYVCRV 2006
F F + +C +
Sbjct: 309 FMREFTRLEICNL 321
>pdb|1ZIV|A Chain A, Catalytic Domain Of Human Calpain-9
Length = 339
Score = 183 bits (464), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 114/321 (35%), Positives = 168/321 (52%), Gaps = 35/321 (10%)
Query: 1706 FTDHEFPPDDQSLYVDPGNPPSKLQVVAEWMRPSEIVKESRLDCQPCLFSGAVNPSDVCQ 1765
F D +FP + SL+ + Q+ W RP EIVK P G +D+CQ
Sbjct: 35 FEDADFPASNSSLFYS-----ERPQIPFVWKRPGEIVK------NPEFILGGATRTDICQ 83
Query: 1766 GRLGDCWFLSAVAVLTEVSQISEVIITPEYNE-----EGIYTVRFCIQGEWVPVVVDDWI 1820
G LGDCW L+A+A LT ++Q + + P+ GI+ +F EW+ VV+DD +
Sbjct: 84 GELGDCWLLAAIASLT-LNQKALARVIPQDQSFGPGYAGIFHFQFWQHSEWLDVVIDDRL 142
Query: 1821 PCESPGKPAFATSKKGHELWVSILEKAYAKLHGSYEALEGGLVQDALVDLTGGAGEEIDM 1880
P + F S +E W ++LEKAYAKL+GSYEAL+GG +A+ D TGG E
Sbjct: 143 PTFR-DRLVFLHSADHNEFWSALLEKAYAKLNGSYEALKGGSAIEAMEDFTGGVAETFQT 201
Query: 1881 RSAQAQIDLASGRLWSQLLRFKQEGFLLGAGSPSGSDVHISSS---GIVQGHAYSILQVR 1937
+ A + L + + G LLG + S + G+++GHAYS+ +
Sbjct: 202 KEAPEN-------FYEILEKALKRGSLLGCFIDTRSAAESEARTPFGLIKGHAYSVTGID 254
Query: 1938 EVD--GHK--LVQIRNPWANEVEWNGPWSDSSPEWTDRMKHKLKHVPQS--KDGIFWMSW 1991
+V G + L++IRNPW +VEWNG WSDSSPEW + K + + DG FWM++
Sbjct: 255 QVSFRGQRIELIRIRNPWG-QVEWNGSWSDSSPEWRSVGPAEQKRLCHTALDDGEFWMAF 313
Query: 1992 QDFQIHFRSIYVCRVYPSEMR 2012
+DF+ HF + +C + P +
Sbjct: 314 KDFKAHFDKVEICNLTPDALE 334
>pdb|2P0R|A Chain A, Structure Of Human Calpain 9 In Complex With Leupeptin
pdb|2P0R|B Chain B, Structure Of Human Calpain 9 In Complex With Leupeptin
Length = 333
Score = 182 bits (461), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 114/317 (35%), Positives = 167/317 (52%), Gaps = 35/317 (11%)
Query: 1706 FTDHEFPPDDQSLYVDPGNPPSKLQVVAEWMRPSEIVKESRLDCQPCLFSGAVNPSDVCQ 1765
F D +FP + SL+ + Q+ W RP EIVK P G +D+CQ
Sbjct: 36 FEDADFPASNSSLFYS-----ERPQIPFVWKRPGEIVK------NPEFILGGATRTDICQ 84
Query: 1766 GRLGDCWFLSAVAVLTEVSQISEVIITPEYNE-----EGIYTVRFCIQGEWVPVVVDDWI 1820
G LGDCW L+A+A LT ++Q + + P+ GI+ +F EW+ VV+DD +
Sbjct: 85 GELGDCWLLAAIASLT-LNQKALARVIPQDQSFGPGYAGIFHFQFWQHSEWLDVVIDDRL 143
Query: 1821 PCESPGKPAFATSKKGHELWVSILEKAYAKLHGSYEALEGGLVQDALVDLTGGAGEEIDM 1880
P + F S +E W ++LEKAYAKL+GSYEAL+GG +A+ D TGG E
Sbjct: 144 PTFR-DRLVFLHSADHNEFWSALLEKAYAKLNGSYEALKGGSAIEAMEDFTGGVAETFQT 202
Query: 1881 RSAQAQIDLASGRLWSQLLRFKQEGFLLGAGSPSGSDVHISSS---GIVQGHAYSILQVR 1937
+ A + L + + G LLG + S + G+++GHAYS+ +
Sbjct: 203 KEAPEN-------FYEILEKALKRGSLLGCFIDTRSAAESEARTPFGLIKGHAYSVTGID 255
Query: 1938 EVD--GHK--LVQIRNPWANEVEWNGPWSDSSPEWTDRMKHKLKHVPQS--KDGIFWMSW 1991
+V G + L++IRNPW +VEWNG WSDSSPEW + K + + DG FWM++
Sbjct: 256 QVSFRGQRIELIRIRNPWG-QVEWNGSWSDSSPEWRSVGPAEQKRLCHTALDDGEFWMAF 314
Query: 1992 QDFQIHFRSIYVCRVYP 2008
+DF+ HF + +C + P
Sbjct: 315 KDFKAHFDKVEICNLTP 331
>pdb|2NQA|A Chain A, Catalytic Domain Of Human Calpain 8
pdb|2NQA|B Chain B, Catalytic Domain Of Human Calpain 8
Length = 326
Score = 179 bits (455), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 121/320 (37%), Positives = 171/320 (53%), Gaps = 37/320 (11%)
Query: 1706 FTDHEFPPDDQSL-YVD--PGNPPSKLQVVAEWMRPSEIVKESRLDCQPCLFSGAVNPSD 1762
F D EFP +L Y D PG+P ++ + W RP+E L P G +D
Sbjct: 26 FKDPEFPAXPSALGYKDLGPGSPQTQGII---WKRPTE------LXPSPQFIVGGATRTD 76
Query: 1763 VCQGRLGDCWFLSAVAVLTEVSQISEVIITPEY----NEEGIYTVRFCIQGEWVPVVVDD 1818
+ QG LGDCW L+A+A LT ++ ++ + N GI+ +F GEWV VV+DD
Sbjct: 77 IXQGGLGDCWLLAAIASLTLNEELLYRVVPRDQDFQENYAGIFHFQFWQYGEWVEVVIDD 136
Query: 1819 WIPCESPGKPAFATSKKGHELWVSILEKAYAKLHGSYEALEGGLVQDALVDLTGGAGEEI 1878
+P ++ G+ F S++G+E W ++LEKAYAKL+G YEAL GG + D TGG E
Sbjct: 137 RLPTKN-GQLLFLHSEQGNEFWSALLEKAYAKLNGXYEALAGGSTVEGFEDFTGGISEFY 195
Query: 1879 DMRSAQAQIDLASGRLWSQLLRFKQEGFLLGAGSPSGSDVH---ISSSGIVQGHAYSILQ 1935
D++ A L+ + + G LLG S I+S +V+ HAYS+
Sbjct: 196 DLKKPPA-------NLYQIIRKALXAGSLLGCSIDVYSAAEAEAITSQKLVKSHAYSVTG 248
Query: 1936 VREVD--GH--KLVQIRNPWANEVEWNGPWSDSSPEWTD---RMKHKLKHVPQSKDGIFW 1988
V EV+ GH KL+++RNPW EVEW+G WSD +PEW R K +L + +DG FW
Sbjct: 249 VEEVNFQGHPEKLIRLRNPWG-EVEWSGAWSDDAPEWNHIDPRRKEELDK--KVEDGEFW 305
Query: 1989 MSWQDFQIHFRSIYVCRVYP 2008
MS DF F + +C + P
Sbjct: 306 MSLSDFVRQFSRLEICNLSP 325
>pdb|1MDW|A Chain A, Crystal Structure Of Calcium-bound Protease Core Of Calpain
Ii Reveals The Basis For Intrinsic Inactivation
pdb|1MDW|B Chain B, Crystal Structure Of Calcium-bound Protease Core Of Calpain
Ii Reveals The Basis For Intrinsic Inactivation
Length = 328
Score = 177 bits (448), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 110/315 (34%), Positives = 161/315 (51%), Gaps = 27/315 (8%)
Query: 1706 FTDHEFPPDDQSLYVDPGNPPSKLQVVAEWMRPSEIVKESRLDCQPCLFSGAVNPSDVCQ 1765
F D FP SL P S EW RP+EI + P G +D+CQ
Sbjct: 28 FQDPSFPALPSSLGFKELGPYSSKTRGIEWKRPTEICAD------PQFIIGGATRTDICQ 81
Query: 1766 GRLGDCWFLSAVAVLTEVSQISEVII----TPEYNEEGIYTVRFCIQGEWVPVVVDDWIP 1821
G LGD W L+A+A LT +I ++ + + N GI+ +F GEWV VVVDD +P
Sbjct: 82 GALGDSWLLAAIASLTLNEEILARVVPLDQSFQENYAGIFHFQFWQYGEWVEVVVDDRLP 141
Query: 1822 CESPGKPAFATSKKGHELWVSILEKAYAKLHGSYEALEGGLVQDALVDLTGGAGEEIDMR 1881
+ G+ F S +G E W ++LEKAYAK++G YEAL GG + D TGG E ++R
Sbjct: 142 TKD-GELLFVHSAEGSEFWSALLEKAYAKINGCYEALSGGATTEGFEDFTGGIAEWYELR 200
Query: 1882 SAQAQIDLASGRLWSQLLRFKQEGFLLGAG---SPSGSDVHISSSGIVQGHAYSILQVRE 1938
L+ + + ++G LLG + + ++ +V+GHAYS+ E
Sbjct: 201 KPPPN-------LFKIIQKALEKGSLLGCSIDITSAADSEAVTYQKLVKGHAYSVTGAEE 253
Query: 1939 VDG----HKLVQIRNPWANEVEWNGPWSDSSPEW-TDRMKHKLKHVPQSKDGIFWMSWQD 1993
V+ KL++IRNPW +VEW G W+D+ P W T + + + +DG FWMS+ D
Sbjct: 254 VESSGSLQKLIRIRNPWG-QVEWTGKWNDNCPSWNTVDPEVRANLTERQEDGEFWMSFSD 312
Query: 1994 FQIHFRSIYVCRVYP 2008
F H+ + +C + P
Sbjct: 313 FLRHYSRLEICNLTP 327
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 33.5 bits (75), Expect = 1.2, Method: Composition-based stats.
Identities = 31/131 (23%), Positives = 48/131 (36%), Gaps = 27/131 (20%)
Query: 478 SGLDSQGCDSSTST-------SANQQILDLNLALAFQERLNDPRITSMLKKRAREGDREL 530
+G D DS T + +++I+ L L+ D + L A G +E+
Sbjct: 26 NGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEI 85
Query: 531 TSLLQDKGLDPN--------------------FAMMLKEKSLDPTILALLQRSSLDADRD 570
LL KG DPN +L K DP R+ LD R+
Sbjct: 86 VKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLARE 145
Query: 571 HGDNTDVAVID 581
HG+ V +++
Sbjct: 146 HGNEEIVKLLE 156
>pdb|2QFE|A Chain A, Distal C2-Like Domain Of Human Calpain-7
Length = 148
Score = 32.7 bits (73), Expect = 2.3, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 2003 VCRVYPSEMRYSVHGQWRGYSAGGCQDYASWNQNP---QFRLRASG 2045
V R P + ++G+W G SAGGC ++ ++N QF + +G
Sbjct: 15 VPRGSPYTLSKRINGKWSGQSAGGCGNFQETHKNNPIYQFHIEKTG 60
>pdb|2EW0|A Chain A, X-Ray Crystal Structure Of Protein Q6ff54 From Acinetobacter
Sp. Adp1. Northeast Structural Genomics Consortium Target
Asr1
Length = 192
Score = 32.0 bits (71), Expect = 3.8, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 44/117 (37%), Gaps = 3/117 (2%)
Query: 1512 MTIDADIGEATCYLDGGFDGYQTGLALSAGNSIWEEGAEVWVGVRPPTDMDVFGR-SDSE 1570
+ IDAD L GG + G L G W V V T D+ + +E
Sbjct: 57 LDIDADNVNPHEVLQGGPLRPEAGFVLHTGQPTWHSSIAVGENVCITTSKDILDAIAHNE 116
Query: 1571 GAESKMHIMDVFLWGRCLTEDEIASLYSAICSAELNM--NEFPEDNWQWADSPPRVD 1625
G + WG+ EDEIA IC A+ ++ N +D W A VD
Sbjct: 117 GVGRYQIALGYASWGKNQLEDEIARGDWLICDADXDLIFNLPYDDRWDAAYKKIGVD 173
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,386,765
Number of Sequences: 62578
Number of extensions: 2305305
Number of successful extensions: 4557
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4448
Number of HSP's gapped (non-prelim): 16
length of query: 2087
length of database: 14,973,337
effective HSP length: 114
effective length of query: 1973
effective length of database: 7,839,445
effective search space: 15467224985
effective search space used: 15467224985
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)