BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000137
(2067 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6ZQ08|CNOT1_MOUSE CCR4-NOT transcription complex subunit 1 OS=Mus musculus GN=Cnot1
PE=1 SV=2
Length = 2375
Score = 345 bits (886), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 198/555 (35%), Positives = 306/555 (55%), Gaps = 58/555 (10%)
Query: 948 NIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQ 1007
NI+TL+ A ++ E +E P + +Q+KI+FI NN+S N+ K +E E +KE++ PW +Q
Sbjct: 1073 NIDTLLVATDQTERIVEPPEN-IQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQ 1131
Query: 1008 YMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLL 1067
Y+VMKR SIEPNFH LY FLD + + N+ ++ TY N KVLL S+ ++ +RSLL
Sbjct: 1132 YLVMKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLL 1191
Query: 1068 KNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSLAY 1125
KNLG WLG +T+ +N+ + ++D KSL++EAY KG ++ V+PF +K+LE SL +
Sbjct: 1192 KNLGHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSLVF 1251
Query: 1126 QPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEG 1185
+PPNPWTMAI+ +LAE++ +LK+NLKF+IEVL KNL +D+ ++ P +LLKD+ R
Sbjct: 1252 RPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNL 1311
Query: 1186 NPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLS 1245
+ S QP+ +P + S PP H ++ Y+
Sbjct: 1312 DEQLSAPKKDVKQPEELPAITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYS------ 1365
Query: 1246 SGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTAL 1305
LA L H+ +N +
Sbjct: 1366 ---------LAGL----------------------------------APHITLNPTIPLF 1382
Query: 1306 GLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHL 1365
H ++ V A++RA++E+V +V RS+ IA T +++V KD+A++S+E+R+ AAH
Sbjct: 1383 QAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIAAHH 1442
Query: 1366 MVASLAGSLAHVTCKEPLRGSISSQLRNSL-QGLTIAS----ELLEQAVQLVTNDNLDLG 1420
M+ +L +A +TC+EPL SIS+ L+NS L AS E+++QA + DN +L
Sbjct: 1443 MMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNCELA 1502
Query: 1421 CAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPG 1480
C I++ A +KA +D +A + L RKH G + DP + + +PE +R K G
Sbjct: 1503 CCFIQKTAVEKAGPEMDKRLATEFEL-RKHARQEGRRYCDPVVLTYQAERMPEQIRLKVG 1561
Query: 1481 HLSVSQQRVYEDFVR 1495
+ Q VYE+F R
Sbjct: 1562 GVDPKQLAVYEEFAR 1576
Score = 198 bits (504), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 168/631 (26%), Positives = 293/631 (46%), Gaps = 73/631 (11%)
Query: 10 SQIRFLLQSLNEANADSVFRELCQFI-EYGIEGSTMMLQTCMDHLNLHGTGL---KNPQL 65
SQI +L+ +L + N + +E+ + +G E +L+ H++ G G K+
Sbjct: 11 SQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGDGKSSGKDFHQ 70
Query: 66 ESVVASVFKYIMDKPNFSTVFSQSV-------KITEINEQLLENLSDVLNLSLPERIGIG 118
+ ++ KPNF + S ++ K + L LS VL LS + + G
Sbjct: 71 TQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLKLSKVQEVIFG 130
Query: 119 LALSDSENLDALMCGKNFCMAQIERLCAN----PVPMNSAEQIQNIIM-----------F 163
LAL +S + D F ++ L + V N Q+I + F
Sbjct: 131 LALLNSSSPDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEVLHLLLSHLLF 190
Query: 164 LQRSS--DLSKHVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDD 221
Q+ + + +D+ ++ L ++ VL P+L + E RD
Sbjct: 191 GQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLL---------------YPEKRDIL 235
Query: 222 FDDIL------AEMEKEMSMGDVMNELGYGCSADASQCKEILSLF--TPLTEITLSRILG 273
D IL A+ E S+ D M E+GYG A +C+ I+ F +T ++R+LG
Sbjct: 236 MDRILPDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIMQFGVREVTAAQVARVLG 295
Query: 274 AIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLS------SWNVDVLVKAIKQLAPNTN 327
+ARTH+GL D S A G SD S +WNV+VL+ +K+L P+ N
Sbjct: 296 MMARTHSGLTDGIPLQSIS--APGSGIWSDGKDKSEGAQAHTWNVEVLIDVLKELNPSLN 353
Query: 328 WIRVVENLDYEGFYIPTEEAF-SFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYA 386
+ V LD+ GF I + + + + E FP+ + WK+ EGQLSF++++
Sbjct: 354 FKEVTYELDHPGFQIRDSKGLHNVVYGIQRGLGMEVFPVDFIYRP-WKHAEGQLSFIQHS 412
Query: 387 VASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQLSEMGHASFARS 446
+ +P EVF FA D + + W LDL++ L +L+E+G +
Sbjct: 413 LINP-EVFCFADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQ 471
Query: 447 MLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHI-WH---VN 502
+ +P+K CP+ML+L + INT+++ +++E+ + P+ + + ++ +ILH WH +
Sbjct: 472 LFSFPIKHCPDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQS 531
Query: 503 PNI-------VLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQ 555
P+I + ++ + + RIL++ Q+LK LS +L P F I LA +AS+
Sbjct: 532 PSIRQLIMHAMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASR 591
Query: 556 KELVDLEKWLSINLSTYKDVFFEECLKFVKE 586
+E + L+KWL+ + + + F + C+ F+K
Sbjct: 592 REYLKLDKWLTDKIREHGEPFIQACMTFLKR 622
Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 114/157 (72%), Gaps = 4/157 (2%)
Query: 662 SEGYADDIEAEANSYFHQMFSG----QLTIEAMVQMLARFKESSVKREHSIFECMIGNLF 717
++ ++ +I+ EANSYF ++++ ++++ +++ML RFK+S++KRE +F CM+ NLF
Sbjct: 836 NQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLF 895
Query: 718 EEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTK 777
EEYRFFP+YP+++L I A LFG II+ LVT++ LG+ALR VL+ALRKP SKM+ FG
Sbjct: 896 EEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIA 955
Query: 778 ALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIE 814
AL++F +RL ++PQYC H+ ISH L +IE
Sbjct: 956 ALDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEYIE 992
Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 128/440 (29%), Positives = 220/440 (50%), Gaps = 49/440 (11%)
Query: 1653 QKLDALIGNDAREAEVQGVISEVPEIILRCISRDE-AALAVAQKVFKGLYENASNN---- 1707
Q L A+ A + Q + S + ++L SRD AAL + QK +GL + S
Sbjct: 1620 QHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL 1679
Query: 1708 --LHFSAHLAILAAIRD-------VCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELL 1758
+ HL +L A++D C K++T +I +E K+N + LIR+ L+
Sbjct: 1680 LLRYRECHLLVLKALQDGRAYGSPWCN---KQITRCLIECRDEYKYNVEAVELLIRNHLV 1736
Query: 1759 NLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDE---SRVVISELHNLVDALAKLAA- 1814
N+ +Y++H+A+ ++ G N A FA+ L++ L+ DE + + ++L + ++ L ++ A
Sbjct: 1737 NMQQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHITEADLFHTIETLMRINAH 1796
Query: 1815 -KPGSPESLQQLIEIVRNPAANANASSGATTAKDDKARQSKDKKAYSHTTANREDYNIPE 1873
+ +PE L QL+E+VR+ A D+A + +S + E Y+
Sbjct: 1797 SRGNAPEGLPQLMEVVRS----------NYEAMIDRAHGGPNFMMHSGISQASE-YD--- 1842
Query: 1874 SVDPDPVGFPEQVSMLFAEW---YQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFF 1930
DP G E+ L EW Y + A + +V Q+HQ G+LK DD+ RFF
Sbjct: 1843 ----DPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFF 1898
Query: 1931 RRLTEVSVA---HCLSSEVINPGTLQSPQQSQSLSFLAIDIYAKLMLSILK-CCPVEQGS 1986
R TE+ V + + NP +P ++ + +D + +L+ ++K
Sbjct: 1899 RLCTEMCVEISYRAQAEQQHNPAA--NPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTV 1956
Query: 1987 SKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILS 2046
+KI LL+K+L + V +L+D + +++ F PY R+FI LL++++ + V + NFQ L+
Sbjct: 1957 TKINLLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLT 2016
Query: 2047 AFANAFHVLQPLKVPAFRLA 2066
AF N FH+L+P K P F A
Sbjct: 2017 AFCNTFHILRPTKAPGFVYA 2036
>sp|A5YKK6|CNOT1_HUMAN CCR4-NOT transcription complex subunit 1 OS=Homo sapiens GN=CNOT1
PE=1 SV=2
Length = 2376
Score = 344 bits (883), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 197/555 (35%), Positives = 307/555 (55%), Gaps = 58/555 (10%)
Query: 948 NIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQ 1007
NI+TL+ A ++ E +E P + +Q+KI+FI NN+S N+ K +E E +KE++ PW +Q
Sbjct: 1074 NIDTLLVATDQTERIVEPPEN-IQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQ 1132
Query: 1008 YMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLL 1067
Y+VMKR SIEPNFH LY FLD + + N+ ++ TY N KVLL S+ ++ +RSLL
Sbjct: 1133 YLVMKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLL 1192
Query: 1068 KNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSLAY 1125
KNLG WLG +T+ +N+ + ++D KSL++EAY KG ++ V+PF +K+LE S+ +
Sbjct: 1193 KNLGHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVF 1252
Query: 1126 QPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEG 1185
+PPNPWTMAI+ +LAE++ +LK+NLKF+IEVL KNL +D+ ++ P +LLKD+ R
Sbjct: 1253 RPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNL 1312
Query: 1186 NPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLS 1245
+ S QP+ +P + S + PP H ++ Y+
Sbjct: 1313 DEQLSAPKKDVKQPEELPPITTTTTSTTPATNTTCTATVPPQPQYSYHDINVYS------ 1366
Query: 1246 SGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTAL 1305
LA L H+ +N +
Sbjct: 1367 ---------LAGL----------------------------------APHITLNPTIPLF 1383
Query: 1306 GLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHL 1365
H ++ V A++RA++E+V +V RS+ IA T +++V KD+A++S+E+R+ AAH
Sbjct: 1384 QAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIAAHH 1443
Query: 1366 MVASLAGSLAHVTCKEPLRGSISSQLRNSL-QGLTIAS----ELLEQAVQLVTNDNLDLG 1420
M+ +L +A +TC+EPL SIS+ L+NS L AS E+++QA + DN +L
Sbjct: 1444 MMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNCELA 1503
Query: 1421 CAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPG 1480
C I++ A +KA +D +A + L RKH G + DP + + +PE +R K G
Sbjct: 1504 CCFIQKTAVEKAGPEMDKRLATEFEL-RKHARQEGRRYCDPVVLTYQAERMPEQIRLKVG 1562
Query: 1481 HLSVSQQRVYEDFVR 1495
+ Q VYE+F R
Sbjct: 1563 GVDPKQLAVYEEFAR 1577
Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 165/629 (26%), Positives = 292/629 (46%), Gaps = 69/629 (10%)
Query: 10 SQIRFLLQSLNEANADSVFRELCQFI-EYGIEGSTMMLQTCMDHLNLHGTGL---KNPQL 65
SQI +L+ +L + N + +E+ + +G E +L+ H++ G G K+
Sbjct: 11 SQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGDGKSSGKDFHQ 70
Query: 66 ESVVASVFKYIMDKPNFSTVFSQSV-------KITEINEQLLENLSDVLNLSLPERIGIG 118
+ ++ KPNF + S ++ K + L LS VL LS + + G
Sbjct: 71 TQFLIQECALLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLKLSKVQEVIFG 130
Query: 119 LALSDSENLDALMCGKNFCMAQIERLCAN----PVPMNSAEQIQNIIM-----------F 163
LAL +S + D F ++ L + V N Q+I + F
Sbjct: 131 LALLNSSSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEVLHLLLSHLLF 190
Query: 164 LQRSS--DLSKHVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDD 221
Q+ + + +D+ ++ L ++ VL P+L + E RD
Sbjct: 191 GQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLL---------------YPEKRDIL 235
Query: 222 FDDIL------AEMEKEMSMGDVMNELGYGCSADASQCKEILSLF--TPLTEITLSRILG 273
D IL A+ E S+ D M E+GYG A +C+ I+ F +T ++R+LG
Sbjct: 236 MDRILPDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIVQFGVREVTAAQVARVLG 295
Query: 274 AIARTHAGLEDNQNTFSTFTLALGCST----MSDLPPLSSWNVDVLVKAIKQLAPNTNWI 329
+ARTH+GL D S G + SD +WNV+VL+ +K+L P+ N+
Sbjct: 296 MMARTHSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLNFK 355
Query: 330 RVVENLDYEGFYIPTEEAF-SFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVA 388
V LD+ GF I + + + + E FP+ + WK+ EGQLSF+++++
Sbjct: 356 EVTYELDHPGFQIRDSKGLHNVVYGIQRGLGMEVFPVDLIYRP-WKHAEGQLSFIQHSLI 414
Query: 389 SPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQLSEMGHASFARSML 448
+P E+F FA D + + W LDL++ L +L+E+G + +
Sbjct: 415 NP-EIFCFADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLF 473
Query: 449 EYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHI-WH---VNPN 504
+P+K CP+ML+L + INT+++ +++E+ + P+ + + ++ +ILH WH +P+
Sbjct: 474 SFPIKHCPDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPS 533
Query: 505 I-------VLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKE 557
I + ++ + + RIL++ Q+LK LS +L P F I LA +AS++E
Sbjct: 534 IRQLIMHAMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRRE 593
Query: 558 LVDLEKWLSINLSTYKDVFFEECLKFVKE 586
+ L+KWL+ + + + F + C+ F+K
Sbjct: 594 YLKLDKWLTDKIREHGEPFIQACMTFLKR 622
Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 114/157 (72%), Gaps = 4/157 (2%)
Query: 662 SEGYADDIEAEANSYFHQMFSG----QLTIEAMVQMLARFKESSVKREHSIFECMIGNLF 717
++ ++ +I+ EANSYF ++++ ++++ +++ML RFK+S++KRE +F CM+ NLF
Sbjct: 837 NQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLF 896
Query: 718 EEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTK 777
EEYRFFP+YP+++L I A LFG II+ LVT++ LG+ALR VL+ALRKP SKM+ FG
Sbjct: 897 EEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIA 956
Query: 778 ALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIE 814
AL++F +RL ++PQYC H+ ISH L +IE
Sbjct: 957 ALDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEYIE 993
Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 129/440 (29%), Positives = 220/440 (50%), Gaps = 49/440 (11%)
Query: 1653 QKLDALIGNDAREAEVQGVISEVPEIILRCISRDE-AALAVAQKVFKGLYENASNN---- 1707
Q L A+ A + Q + S + ++L SRD AAL + QK +GL + S
Sbjct: 1621 QHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL 1680
Query: 1708 --LHFSAHLAILAAIRD-------VCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELL 1758
+ HL +L A++D C K++T +I +E K+N + LIR+ L+
Sbjct: 1681 LLRYRECHLLVLKALQDGRAYGSPWCN---KQITRCLIECRDEYKYNVEAVELLIRNHLV 1737
Query: 1759 NLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDE---SRVVISELHNLVDALAKLAA- 1814
N+ +Y++H+A+ ++ G N A FA+ L++ L+ DE + V ++L + ++ L ++ A
Sbjct: 1738 NMQQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAH 1797
Query: 1815 -KPGSPESLQQLIEIVRNPAANANASSGATTAKDDKARQSKDKKAYSHTTANREDYNIPE 1873
+ +PE L QL+E+VR+ A D+A + +S + E Y+
Sbjct: 1798 SRGNAPEGLPQLMEVVRS----------NYEAMIDRAHGGPNFMMHSGISQASE-YD--- 1843
Query: 1874 SVDPDPVGFPEQVSMLFAEW---YQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFF 1930
DP G E+ L EW Y + A + +V Q+HQ G+LK DD+ RFF
Sbjct: 1844 ----DPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFF 1899
Query: 1931 RRLTEVSVA---HCLSSEVINPGTLQSPQQSQSLSFLAIDIYAKLMLSILK-CCPVEQGS 1986
R TE+ V + + NP +P ++ + +D + +L+ ++K
Sbjct: 1900 RLCTEMCVEISYRAQAEQQHNPAA--NPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTV 1957
Query: 1987 SKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILS 2046
+KI LL+K+L + V +L+D + +++ F PY R+FI LL++++ + V + NFQ L+
Sbjct: 1958 TKINLLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLT 2017
Query: 2047 AFANAFHVLQPLKVPAFRLA 2066
AF N FH+L+P K P F A
Sbjct: 2018 AFCNTFHILRPTKAPGFVYA 2037
>sp|A0JP85|CNOT1_XENTR CCR4-NOT transcription complex subunit 1 OS=Xenopus tropicalis
GN=cnot1 PE=2 SV=1
Length = 2388
Score = 329 bits (843), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 200/558 (35%), Positives = 306/558 (54%), Gaps = 39/558 (6%)
Query: 948 NIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQ 1007
NI+TL+ A + +E P + VQ+KI+FI NN+S N+ K +E E +K+ Y PW +Q
Sbjct: 1060 NIDTLLVATDLAGQIVEPPEN-VQEKIAFIFNNLSQSNMTQKVEELKETVKDDYMPWVSQ 1118
Query: 1008 YMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLL 1067
Y+VMKR SIE NFH LY FLD + N+ ++ TY N KVLL S+ ++ +RSLL
Sbjct: 1119 YLVMKRVSIELNFHSLYSNFLDALKHLEFNKMVLAETYRNIKVLLTSDKAAANFSDRSLL 1178
Query: 1068 KNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSLAY 1125
KNLG WLG +T+ +N+ + ++D KSL++EAY KG ++ V+PF +K+LE S+ +
Sbjct: 1179 KNLGHWLGMITLAKNKPILHTDLDLKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVF 1238
Query: 1126 QPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEG 1185
+PPNPWTMAI+ +LAE++ +LK+NLKF+IEVL KNL +D+ D+ P +LLKD+ R
Sbjct: 1239 RPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLVLDINDLKPGTLLKDKDRLKSL 1298
Query: 1186 NPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLS 1245
+ S QP+ +P P+ AS + A L S
Sbjct: 1299 DEQLSAPKKDVKQPEELP---------------PMTSAS--------EYAIRTAGKLWAS 1335
Query: 1246 SGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPF---SVSQLSTPIPNIGTHVIINQKL 1302
D A + + Q Q + V L+ P+I +N +
Sbjct: 1336 VEKQESDAVFTATATAPPPSTTCTTTVPPQPQYSYHDIHVYSLAGLAPHI----TLNPTI 1391
Query: 1303 TALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNA 1362
H ++ V A++RA++E+V +V RS+ IA T +++V KD+A++S+E+R+ A
Sbjct: 1392 PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIA 1451
Query: 1363 AHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIAS-----ELLEQAVQLVTNDNL 1417
AH M+ +L +A +TC+EPL SI++ L+NS A+ E++EQA + DN
Sbjct: 1452 AHHMMRNLTAGMAMITCREPLLMSIATNLKNSFATAMRAASPQQREMMEQAAAQLAQDNC 1511
Query: 1418 DLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRP 1477
+L C I++ A +KA +D A + L RKH G + DP + + +PE +R
Sbjct: 1512 ELACCFIQKTAVEKAGPEMDKRPATEFEL-RKHARQEGRRYCDPVVLTYQAERMPEQIRL 1570
Query: 1478 KPGHLSVSQQRVYEDFVR 1495
K G + Q VYE+F R
Sbjct: 1571 KVGGVDPKQLAVYEEFAR 1588
Score = 194 bits (494), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 165/629 (26%), Positives = 294/629 (46%), Gaps = 69/629 (10%)
Query: 10 SQIRFLLQSLNEANADSVFRELCQFI-EYGIEGSTMMLQTCMDHLNLHGTGL---KNPQL 65
SQI +L+ +L + N + E+ + +G E +L+ H++ G G K+
Sbjct: 11 SQISYLVDNLTKKNYRASQLEIQHIVNRHGPEADRHLLRCLFSHVDFSGDGKSSGKDFHQ 70
Query: 66 ESVVASVFKYIMDKPNFSTVFSQSV-------KITEINEQLLENLSDVLNLSLPERIGIG 118
+ ++ KPNF + S ++ K + + L LS VL LS + + G
Sbjct: 71 TQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVLKLSKVQEVIFG 130
Query: 119 LALSDSENLDALMCGKNFCMAQIERLCANPVPMN-SAEQ---IQNIIM-----------F 163
LAL +S + + F ++ L + V ++ S Q Q+I + F
Sbjct: 131 LALLNSSSCELRGFAAQFVKQKLPDLLRSYVDVDVSGSQEGGFQDIAIEVLHLLLSNLLF 190
Query: 164 LQRSS--DLSKHVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDD 221
Q+ + + + + ++ L ++ VL P+L + E RD
Sbjct: 191 GQKGAFGVGQEQIVAFLKTLRRDFPQERCPVVLAPLL---------------YPEKRDIL 235
Query: 222 FDDILAE---MEKEM---SMGDVMNELGYGCSADASQCKEILSLF--TPLTEITLSRILG 273
D ILA+ + K M S+ D M E+GY A +C+ ++ F +T + ++R+LG
Sbjct: 236 MDRILADSGGITKTMMDSSLADFMQEVGYSFCASVEECRNVIVQFGVREVTAVQVARVLG 295
Query: 274 AIARTHAGLEDNQNTFSTFTLALGCST----MSDLPPLSSWNVDVLVKAIKQLAPNTNWI 329
+ARTH+GL D S + G + +D +WNV+VL+ +K+L P N+
Sbjct: 296 MMARTHSGLTDGIPLQSITSPGSGIWSDGKDKNDAVQPHTWNVEVLIDVVKELNPTLNFK 355
Query: 330 RVVENLDYEGFYIPTEEAF-SFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVA 388
V LD F I + + + + E FP+ V WKN EGQLSF+++++
Sbjct: 356 EVTYELDNPSFQIRDSKGLQTVVYGIQRGLGIEAFPVDLVYRP-WKNAEGQLSFIQHSLV 414
Query: 389 SPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQLSEMGHASFARSML 448
+P +VF FA A D + + W LDL++ L +L+E+G + +
Sbjct: 415 NP-DVFCFADYACHAVATDILKAPPEDDNREIATWKSLDLIESLLRLAELGQYEQVKQLF 473
Query: 449 EYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHI-WH---VNPN 504
YP+K CP+ML+L + INT ++ +++E+ + P+ + + ++ +ILH WH +P+
Sbjct: 474 AYPIKHCPDMLVLALLQINTTWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPS 533
Query: 505 I-------VLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKE 557
I + ++ + + RIL++ Q+LK LS +L P F I LA +AS++E
Sbjct: 534 IRQLIMHAMAEWYMRGEQYDQARLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRRE 593
Query: 558 LVDLEKWLSINLSTYKDVFFEECLKFVKE 586
+ L+KWL+ + + + F + C+ F+K
Sbjct: 594 YLKLDKWLTDKIREHGEPFIQACMTFLKR 622
Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 114/157 (72%), Gaps = 4/157 (2%)
Query: 662 SEGYADDIEAEANSYFHQMFSG----QLTIEAMVQMLARFKESSVKREHSIFECMIGNLF 717
++ ++ +I+ EANSYF ++++ ++++ +++ML RFK+S++KRE +F CM+ NLF
Sbjct: 831 NQHFSKEIDDEANSYFQRIYNQPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLF 890
Query: 718 EEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTK 777
EEYRFFP+YP+++L I A LFG II+ LVT++ LG+ALR VL+ALRKP SKM+ FG
Sbjct: 891 EEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYQSKMYFFGIA 950
Query: 778 ALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIE 814
AL++F +RL ++PQYC H+ ISH L +IE
Sbjct: 951 ALDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEYIE 987
Score = 160 bits (406), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 122/409 (29%), Positives = 208/409 (50%), Gaps = 49/409 (11%)
Query: 1684 SRDE-AALAVAQKVFKGLYENASNN------LHFSAHLAILAAIRD-------VCKLVVK 1729
SRD AAL + QK +GL + S + HL +L A++D C K
Sbjct: 1664 SRDAIAALGLLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGSPWCN---K 1720
Query: 1730 ELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQT 1789
++T +I +E K+N + LIR+ L+N+ +Y++H+A+ ++ G N A FA+ L++
Sbjct: 1721 QITRCLIECRDEYKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLNYMAVAFAMQLVKI 1780
Query: 1790 LVTDE---SRVVISELHNLVDALAKLAA--KPGSPESLQQLIEIVRNPAANANASSGATT 1844
L+ DE S V +E + ++ L ++ A + +PE L QL++++R +N +A
Sbjct: 1781 LLVDERSVSHVTEAEFFHTIETLMRINAHSRGNAPEGLPQLMDVLR---SNFDAMM---- 1833
Query: 1845 AKDDKARQSKDKKAYSHTTANREDYNIPESVDPDPVGFPEQVSMLFAEW---YQICELPG 1901
++A + +S + E Y+ DP G E+ L EW Y
Sbjct: 1834 ---ERAHGGPNFMMHSGISQASE-YD-------DPPGLREKAEYLLREWVNLYHSAAAGR 1882
Query: 1902 SNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVA---HCLSSEVINPGTLQSPQQS 1958
+ A + +V Q+HQ G+LK DD+ RFFR TE+ V + + NP +P
Sbjct: 1883 DSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPAA--NPTMI 1940
Query: 1959 QSLSFLAIDIYAKLMLSILK-CCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPR 2017
++ + +D + +L+ ++K +KI LL+K+L + V +L+D E +++ F
Sbjct: 1941 RAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHEVRQSEFQQL 2000
Query: 2018 PYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFRLA 2066
PY R+FI LL++++ + V + NFQ L+AF N FH+L+P K P F A
Sbjct: 2001 PYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYA 2049
>sp|A1A5H6|CNOT1_DANRE CCR4-NOT transcription complex subunit 1 OS=Danio rerio GN=cnot1 PE=2
SV=1
Length = 2374
Score = 227 bits (578), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 165/236 (69%), Gaps = 3/236 (1%)
Query: 948 NIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQ 1007
NI+TL+ A ++ E +E P + VQ+KI+FI NN+S N+ K +E E +KE++ PW +Q
Sbjct: 1066 NIDTLLVATDQTERIVEPPEN-VQEKIAFIFNNLSQSNMSQKVEELKETVKEEFMPWVSQ 1124
Query: 1008 YMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLL 1067
Y+VMKR SIEPNFH LY FLD + + + ++ TY N KVLL S+ ++ +RSLL
Sbjct: 1125 YLVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLL 1184
Query: 1068 KNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSLAY 1125
KNLG WLG +T+ +N+ + +++ KSL++EAY KG ++ V+PF +K+LE S+ +
Sbjct: 1185 KNLGHWLGMITLAKNKPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSVIF 1244
Query: 1126 QPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKR 1181
+P NPWTM I+ +LAE++ +LK+NLKF+IEVL KNL +D+ D+ P +LL+D+ +
Sbjct: 1245 RPQNPWTMGIMNVLAELHQEHDLKLNLKFEIEVLCKNLSMDITDLKPGNLLRDKDK 1300
Score = 212 bits (540), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 173/626 (27%), Positives = 302/626 (48%), Gaps = 63/626 (10%)
Query: 10 SQIRFLLQSLNEANADSVFRELCQFI-EYGIEGSTMMLQTCMDHLNLHGTGLKNP----Q 64
SQI +L+ +L + N + +E+ + +G E +L+ H++ G G + Q
Sbjct: 11 SQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGDGKSSGKDFHQ 70
Query: 65 LESVVASVFKYIMDKPNFSTVFSQSV-------KITEINEQLLENLSDVLNLSLPERIGI 117
+ ++ I KPNF + ++ K + + L LS VL LS + + +
Sbjct: 71 TQFLIQECVSLIT-KPNFISTLCYAIDNPLHYQKSLKPSPHLFTQLSKVLKLSKVQEVIL 129
Query: 118 GLALSDSENLDALMCGKNFCMAQIERLCANPVPM----NSAEQIQNIIM----------- 162
GLALS+S N D F ++ L + V N Q+I +
Sbjct: 130 GLALSNSSNADLRGFAAQFVKQKLPDLLRSYVDADLGGNQEGGFQDIAIEVLHLLLSHLL 189
Query: 163 FLQRSSDL--SKHVDSLMQILSLLQSKDHTQFVLNPVL-PDELHDATSLRDLDLFHECRD 219
F Q+ S + +D+ ++ L ++ VL P+L PD+ RD+ L
Sbjct: 190 FGQKGSSGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPDK-------RDI-LMDRILP 241
Query: 220 DDFDDILAEMEKEMSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLS---RILGAIA 276
D D L + E S+ D M E+GYG A +C+ I+ + + E+T S R+LG +A
Sbjct: 242 DSGD--LNKTMMESSLADFMQEVGYGFCASLEECRNIILQYG-VREVTASQVARVLGMMA 298
Query: 277 RTHAGLEDNQNTFSTFTLALGCSTMSDLPPLS----SWNVDVLVKAIKQLAPNTNWIRVV 332
RTH+GL D + + G SD S +WNV+VL+ +K++ PN N+ V
Sbjct: 299 RTHSGLSDGISLQTITNPVGGGGIWSDGKDKSDSSQAWNVEVLIDVVKEVNPNLNFKEVT 358
Query: 333 ENLDYEGFYIPTEEAFSFFM-SVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPP 391
LD+ GF I + + + + E FP+ + WK+ EGQLSF+++++ SP
Sbjct: 359 YELDHPGFLIRDSKGLQIVVYGIQRGLGMEVFPVDLIYRP-WKHAEGQLSFIQHSLLSP- 416
Query: 392 EVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQLSEMGHASFARSMLEYP 451
EVF FA + +D + + W LDL++ L +LSE+GH + + +P
Sbjct: 417 EVFCFADNPCHTVAIDTLKAPPEDDNREIATWKSLDLVESLLRLSEVGHYEQVKQLFSFP 476
Query: 452 LKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHI-WH---VNPNI-- 505
+K CP+ML+L + I+T+++ +++E+ + P+ + + ++ +ILH WH +P+I
Sbjct: 477 IKHCPDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQ 536
Query: 506 -----VLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVD 560
+ ++ + + RIL++ Q+LK LS +L P F I LA +AS++E +
Sbjct: 537 LIMHSMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLK 596
Query: 561 LEKWLSINLSTYKDVFFEECLKFVKE 586
L+KWL+ + + + F + C+ F+K
Sbjct: 597 LDKWLTDKIREHGEPFIQACVTFLKR 622
Score = 168 bits (425), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 114/157 (72%), Gaps = 4/157 (2%)
Query: 662 SEGYADDIEAEANSYFHQMFSG----QLTIEAMVQMLARFKESSVKREHSIFECMIGNLF 717
++ ++ +I+ EANSYF ++++ ++++ +++ML RFK+S++KRE +F CM+ NLF
Sbjct: 829 NQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLF 888
Query: 718 EEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTK 777
EEYRFFP+YP+++L I A LFG II+ LVT++ LG+ALR VL+ALRKP SKM+ FG
Sbjct: 889 EEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIA 948
Query: 778 ALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIE 814
AL++F +RL ++PQYC H+ I+H L +IE
Sbjct: 949 ALDRFKNRLKDYPQYCQHLASIAHFLQFPHHLQEYIE 985
Score = 164 bits (415), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 126/436 (28%), Positives = 221/436 (50%), Gaps = 42/436 (9%)
Query: 1653 QKLDALIGNDAREAEVQGVISEVPEIILRCISRDE-AALAVAQKVFKGLYENASNN---- 1707
Q L A+ A + Q + S + +++ SRD AAL + QK +GL + S
Sbjct: 1620 QHLHAIPPALAMNPQTQAIRSLLEAVVMARNSRDGIAALGLLQKAVEGLLDATSGADPEL 1679
Query: 1708 --LHFSAHLAILAAIRDV----CKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLA 1761
+ HL +L A++D + K++T +I +E K+N + LIR+ L+N+
Sbjct: 1680 LLSYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ 1739
Query: 1762 EYNVHMAKLIDGGRNKAATEFAISLLQTLVTDE---SRVVISELHNLVDALAKLAA--KP 1816
+Y++H+A+ ++ G N A FA+ L++ L+ DE S + ++L + ++ L + +A +
Sbjct: 1740 QYDLHLAQSMENGLNYMAVAFAMQLVKLLLVDERSVSHITEADLFHTIETLMRTSAHSRA 1799
Query: 1817 GSPESLQQLIEIVRNPAANANASSGATTAKDDKARQSKDKKAYSHTTANREDYNIPESVD 1876
+PE L QL+++VR+ A D+ + +S + E Y+
Sbjct: 1800 NAPEGLPQLMDVVRS----------NYEAMIDRHHGGPNFMMHSGISQASE-YD------ 1842
Query: 1877 PDPVGFPEQVSMLFAEW---YQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRL 1933
DP G E+ L EW Y + A + +V Q+HQ G+LK DD+ RFFR
Sbjct: 1843 -DPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLC 1901
Query: 1934 TE--VSVAHCLSSEVINPGTLQSPQQSQSLSFLAIDIYAKLMLSILK-CCPVEQGSSKIF 1990
TE V +++ +E +P T SP ++ + +D + +L+ ++K +KI
Sbjct: 1902 TEMCVEISYRAQAEQQHPTT--SPAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKIN 1959
Query: 1991 LLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFAN 2050
LL+K+L + V +++D + ++ F PY R+FI LL++++ + V + NFQ L+AF N
Sbjct: 1960 LLNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCN 2019
Query: 2051 AFHVLQPLKVPAFRLA 2066
FH+L+P K P F A
Sbjct: 2020 TFHILRPTKAPGFVYA 2035
Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 118/209 (56%), Gaps = 6/209 (2%)
Query: 1292 IGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYA 1351
+ H+ IN + L H ++ V A++RA++E+V +V RS+ IA T +++V KD+A
Sbjct: 1368 LAPHININVNIPLLQAHPQLKQCVRPAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFA 1427
Query: 1352 MESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIA-----SELLE 1406
++S+E+ + AAH M+ +L +A +TC+EPL SI++ L+NS A E++E
Sbjct: 1428 LDSEESHMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQREMME 1487
Query: 1407 QAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQ 1466
+A + DN +L C I++ A +KA +D +A + L RKH G + DP +
Sbjct: 1488 EAAARIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFEL-RKHARQEGRRYCDPMVLTY 1546
Query: 1467 GSMGVPEALRPKPGHLSVSQQRVYEDFVR 1495
+ +PE +R K G + Q VYE+F R
Sbjct: 1547 QAERMPEQIRLKVGGVDPKQLAVYEEFAR 1575
>sp|P87112|NOT1_SCHPO General negative regulator of transcription subunit 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=not1 PE=1 SV=1
Length = 2100
Score = 171 bits (433), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 86/223 (38%), Positives = 132/223 (59%), Gaps = 6/223 (2%)
Query: 962 PIEAPASE------VQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRAS 1015
P+ P +E V D I F INN+S LN K K+ + L Y PWF+ Y+V +R S
Sbjct: 853 PLNVPNAEGEIEESVCDNILFAINNLSQLNFNEKLKDVKDNLTPAYLPWFSHYIVTQRVS 912
Query: 1016 IEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLG 1075
E NF LY KFL+++ S L + + + T + ++ + S E++ LKNLGSWLG
Sbjct: 913 REANFLSLYGKFLEELKSSDLYKIVFRDTLQAILDIMNNNAETLSPSEKTNLKNLGSWLG 972
Query: 1076 KLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAI 1135
+T+ RN+ + ++ K L++E + G + V+PF K+LE SS+ ++PPNPW M I
Sbjct: 973 SITLLRNKPITTLQVSFKDLLLEGIDSGRIDRVLPFVCKVLEKASSSVIFKPPNPWLMGI 1032
Query: 1136 LGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKD 1178
L LL E+Y + ++NLKF+IE+L NL V M +I P+ + ++
Sbjct: 1033 LKLLVELYQFADFRLNLKFEIELLLNNLNVKMDNIEPSEMYRN 1075
Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 158/560 (28%), Positives = 278/560 (49%), Gaps = 46/560 (8%)
Query: 309 SWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYAC---QEPFPL 365
+W+ ++ KAI N NW ++ D F I + F +++ A Q F L
Sbjct: 292 AWDTVLMGKAIVSSFENLNWEAMLSMFDNPKFMITGTPSLVLFFTIFTNAYKLRQTNFTL 351
Query: 366 HAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQ-ANHAWL 424
+ +W+N QLS + + + SP +F P V +V LK S + N+A +
Sbjct: 352 DFL-WVLWRNPLPQLSIISHIILSPTSMFDIREFNVN-PVV-SVDSLKDYSEELVNYAKI 408
Query: 425 -------CLDLLDVLCQL-SEMGHASFARSMLEYPL--KQCPEMLLLGMAHINTAYNLIQ 474
C++L+ +L +L SE+ ++ S+ L K E+LLLG + A+N +Q
Sbjct: 409 YEKSNLNCIELVQILLRLLSEV--VTYETSLFLNFLDEKVSAELLLLGTLQLPLAWNPVQ 466
Query: 475 YEVSFAVFPMIIKSTMSNGMI-LHIWHVNPNIVLRGFVDAQNMEPDCTI-RILEICQELK 532
++F + + + + I NP L F+ + ++ ++ +++E E
Sbjct: 467 ESLAFQWCSDFFSNFKEHKFVFVRIERTNPQF-LFAFLRSLWLKDSSSVNQVVEFIIEND 525
Query: 533 ILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKD-----VFFEECLKFVKEV 587
S + + P+ FA+ +A +A+ ++ + + WL + ++D VF E L F+
Sbjct: 526 FTSHIGNIQPNRFALEIAALAAARKALSFQDWLDKKMLEFEDADGLNVFLVEVLDFLMS- 584
Query: 588 QFGRSQDFSAQPFHHSGALLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDS 647
+ ++ S Q +L++ + + V+L L ++ + S ++SE I+ Q + L
Sbjct: 585 RAALQKNESEQ--KEESVVLSI--DTVNVLLTTLMDNVSI--SEEVSEHIKDVQILCLQV 638
Query: 648 TPRLQN-GEAADS-----STSEGYADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESS 701
PRL + G DS +T+ ++ D+E+E SYF ++ +++I +V L FK+S
Sbjct: 639 YPRLFSLGHDRDSIVIATNTTNSFSPDVESEVESYFQALYERRISIGKIVLTLQNFKKSE 698
Query: 702 VKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLD 761
R+ +F C+ +LF+EYRFFP YP L + AVLFGS+I+ +L++ + LG+ALR V
Sbjct: 699 NPRDLDLFACLQHSLFDEYRFFPDYPLEALALTAVLFGSLIQFELLSFVPLGVALRYVYQ 758
Query: 762 ALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARIS 821
AL P DSKMF FG +AL QF ++L ++ YCN IL I L+ ++ I +A
Sbjct: 759 ALLMPTDSKMFRFGMQALVQFQEKLPKYINYCNLILGIPSLQLVRPDIYDSIREMIASNE 818
Query: 822 SGHLESD------GASNPAA 835
+ +E D +NPA+
Sbjct: 819 NTEVEKDKLDSFSALANPAS 838
Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 188/769 (24%), Positives = 313/769 (40%), Gaps = 155/769 (20%)
Query: 1312 QRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLA 1371
+ + + + +++ EI+S +V+RSV IA TTK L+ KD+A ES+ +R+ AA M +LA
Sbjct: 1132 KNITQLIIQQSVLEIISAVVRRSVGIAAITTKSLLQKDFAAESNPSRLLLAARQMAKTLA 1191
Query: 1372 GSLAHVTCKEPLRGSISSQLRN-SLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATD 1430
G+LA VTC+EPL+ + + R +LQ + + QA+ + + NL + +VIE A++
Sbjct: 1192 GNLAMVTCREPLQMLMINNFRTIALQDVENVHAAVAQAIDELVSQNLFVASSVIESVASE 1251
Query: 1431 KAIQTIDGEIAQQLSLRRKHREGVGS-SFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRV 1489
AI ID EI + R +HR+ + F DP A + +P L+ L+ Q ++
Sbjct: 1252 TAIAEIDAEIEHMIVERVRHRKTTPNLPFVDPAGAANLHLNLPSVLKLS-SELTPQQFQL 1310
Query: 1490 YEDFVRLPWQNQSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAV 1549
YE+F RL S S G T S D+ A L N + A T +
Sbjct: 1311 YENFDRLSLSTIMSNNSFTSLNGLRTDSADSTDALNSNL-----NNTVENEANQTALN-Y 1364
Query: 1550 SRPSDVASGTTESTSAGFLSTSLVHIGAADGGILHNSESESVNAAFTPAATELYAADSTE 1609
+R + G +A TS+ + A LH E VN T A+
Sbjct: 1365 ARNLLIIIGQLFQLAAQMPYTSMQEVPADHE--LH----ELVNQFLTGVAS--------- 1409
Query: 1610 PVKEPGASSQSLPSTAAPERIGSSILEPSLQTRDALDKYHIVAQKLDALIGNDAREAEVQ 1669
+ P A L + AQ+ ++ D++ +
Sbjct: 1410 -INHPIADHVFL----------------------------LCAQECCRILLTDSKSPFIL 1440
Query: 1670 GVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVK 1729
V S + E I C + + A+ V+ LY N SN+L IL+ IR
Sbjct: 1441 EVFSAILEYI--CQASTKTAINVS------LYWNFSNDLEKLNLPIILSLIR-------- 1484
Query: 1730 ELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKA-ATEFAISLLQ 1788
G++ S E + H+A+ + + T+FAI LL+
Sbjct: 1485 --------------------FGILTS-----GEVDYHVARGVRSEQGSGPVTDFAIELLR 1519
Query: 1789 TLVTDESRVVISELHNLVDALAKL-----AAKPGSPESLQQLIEIVRNPAANANASSGAT 1843
T V E+ + + N V+++ L + + ++ +QL+E + N + S +
Sbjct: 1520 TAVGGENPMALP--GNFVNSITSLYEISESFSGETKQAYEQLVETM-----NKSVSPASE 1572
Query: 1844 TAKD-DKARQSKDKKAYSHTTANREDYNIPESVDPDPVGFPEQVSMLFAEWYQICELPGS 1902
D D +Q D Q+ ++F W + +
Sbjct: 1573 ILSDLDNKQQLND-----------------------------QIIIVFVSWVHLLRNSAT 1603
Query: 1903 NDAACTRYVLQLHQNGLLKGDDMTDRFFR-RLTEVSVAHCLSSEVINPGTLQSPQQSQSL 1961
ND +V QLH+ G+L ++ +FFR L V VA ++ V P
Sbjct: 1604 NDETKAAFVYQLHKQGILSEPELCIQFFRCNLEAVLVAFLEAASVNAPD----------- 1652
Query: 1962 SFLAIDIYAKLMLSILKCCP-VEQG--SSKIFLLSKILTVTVKFILKDAEEKKASF-NPR 2017
+ +D YA L+++++K +G SSK L KI+ + + + + A F + +
Sbjct: 1653 -YFNVDAYASLLVNVVKYTEGSTEGTVSSKSVLFRKIIALIIG-VFAELHNSMAEFVHQK 1710
Query: 2018 PYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFRLA 2066
+FRLF + L ++ V + I S F +QP PAF A
Sbjct: 1711 TFFRLFSSILSELDDAKDVLESCFVDIYSVILECFLAIQPRSFPAFTFA 1759
>sp|P25655|NOT1_YEAST General negative regulator of transcription subunit 1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=CDC39 PE=1 SV=3
Length = 2108
Score = 157 bits (397), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 146/267 (54%), Gaps = 10/267 (3%)
Query: 910 SSAQKLHNAVSAPAMLSISSGFARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASE 969
S AQ + V A + + +RP + + KF + + + E +
Sbjct: 733 SQAQVYQSIVEAATLANAPKERSRPVQEMIPLKFFAVDEVSCQINQ--------EGAPKD 784
Query: 970 VQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLD 1029
V +K+ F++NN++ N+ K E + L Y+ WF+ Y+V +RA EPN+HDLY K +
Sbjct: 785 VVEKVLFVLNNVTLANLNNKVDELKKSLTPNYFSWFSTYLVTQRAKTEPNYHDLYSKVIV 844
Query: 1030 KVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRARE 1089
+ S L++ +V T VLL ++ + ++ LKNL SWLG +T+ N+ ++ +
Sbjct: 845 AMGSGLLHQFMVNVTLRQLFVLLSTK--DEQAIDKKHLKNLASWLGCITLALNKPIKHKN 902
Query: 1090 IDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLK 1149
I + ++IEAY++ + V+PF +KIL+ S ++PPNPWT+ IL LL E+ N K
Sbjct: 903 IAFREMLIEAYKENRLEIVVPFVTKILQRASESKIFKPPNPWTVGILKLLIELNEKANWK 962
Query: 1150 MNLKFDIEVLFKNLGVDMKDITPTSLL 1176
++L F++EVL K+ + K + P++ +
Sbjct: 963 LSLTFEVEVLLKSFNLTTKSLKPSNFI 989
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 86/148 (58%), Gaps = 6/148 (4%)
Query: 651 LQNGEAADSSTSEGYADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFE 710
L NG+ A G +DIE E +Y +M+SG+L I+ ++++L R ++S + R+ +F
Sbjct: 585 LANGDIA------GINNDIEKEMQNYLQKMYSGELAIKDVIELLRRLRDSDLPRDQEVFT 638
Query: 711 CMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSK 770
C+ + E FF YP L +VLFGS+I QL+ L +A R ++ ++P +SK
Sbjct: 639 CITHAVIAESTFFQDYPLDALATTSVLFGSMILFQLLRGFVLDVAFRIIMRFAKEPPESK 698
Query: 771 MFVFGTKALEQFVDRLIEWPQYCNHILQ 798
MF F +A+ F RL E+PQYC +L+
Sbjct: 699 MFKFAVQAIYAFRIRLAEYPQYCKDLLR 726
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 106/191 (55%)
Query: 1303 TALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNA 1362
T H +RV +A+ ++++EI+ +V++S IA TT +++LKD+A E DE+++ A
Sbjct: 1080 TIFVTHPDLKRVFQMALAKSVREILLEVVEKSSGIAVVTTTKIILKDFATEVDESKLKTA 1139
Query: 1363 AHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCA 1422
A +MV LA SLA T EPL+ I S +++ L S + + N+N+ +
Sbjct: 1140 AIIMVRHLAQSLARATSIEPLKEGIRSTMQSLAPNLMSLSSSPAEELDTAINENIGIALV 1199
Query: 1423 VIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPGHL 1482
+IE+A+ DK+ Q + ++ Q +++RR H+E F S+ +PE L K +
Sbjct: 1200 LIEKASMDKSTQDLADQLMQAIAIRRYHKERRADQPFITQNTNPYSLSLPEPLGLKNTGV 1259
Query: 1483 SVSQQRVYEDF 1493
+ Q RVYE+F
Sbjct: 1260 TPQQFRVYEEF 1270
Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 91/417 (21%), Positives = 175/417 (41%), Gaps = 72/417 (17%)
Query: 1665 EAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVC 1724
+ +++ +I ++ I + +D+ AL V+Q V L+ + + L +L + +
Sbjct: 1393 QNQIKTIIFQILTFIAKSAQKDQLALKVSQAVVNSLFATSESPLCREVLSLLLEKLCSLS 1452
Query: 1725 KLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKA--ATEF 1782
+ K++ W++Y+ + RKFN + L+ L++ E + L+ +NK +TEF
Sbjct: 1453 LVARKDVVWWLVYALDSRKFNVPVIRSLLEVNLIDATELD---NVLVTAMKNKMENSTEF 1509
Query: 1783 AISLLQTLVTDESRVVISELHNLVDALAKLAAKPGSPESLQQLIEIVRNPAANANASSGA 1842
A+ L+Q V + +++ + + L LA+ + + N
Sbjct: 1510 AMKLIQNTVLSDDPILMR--MDFIKTLEHLAS------------------SEDENVKKFI 1549
Query: 1843 TTAKDDKARQSKDKKAYSHTTANREDYNIPESVDPDPVGFPEQVSMLFAEWYQICELPGS 1902
+D K + + T E++ ++F EW ++ + +
Sbjct: 1550 KEFEDTKIMPVRKGTKTTRT---------------------EKLYLVFTEWVKLLQRVEN 1588
Query: 1903 NDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTLQSPQQSQSLS 1962
ND T ++ QL + G++ D F + E+SV+ S+ +
Sbjct: 1589 NDVITTVFIKQLVEKGVISDTDNLLTFVKSSLELSVSSFKESDPTDE------------V 1636
Query: 1963 FLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRL 2022
F+AID L++ +L + + + ++ + I +V V KD ++ +FN RPYFRL
Sbjct: 1637 FIAIDALGSLIIKLLILQGFKDDTRRDYI-NAIFSVIVLVFAKDHSQEGTTFNERPYFRL 1695
Query: 2023 FINWLLDMSSLDP-----VADGSNFQIL----SAFANAF----HVLQPLKVPAFRLA 2066
F N L + +++ ++D S Q L S F N F H LQP P F A
Sbjct: 1696 FSNILYEWATIRTHNFVRISDSSTRQELIEFDSVFYNTFSGYLHALQPFAFPGFSFA 1752
>sp|Q8Y5X6|AROB_LISMO 3-dehydroquinate synthase OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=aroB PE=3 SV=1
Length = 365
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 17/89 (19%)
Query: 706 HSIFECMIGNLFE------EYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGV 759
H + + MIGN ++ + +FF PER+LR F +IKH L++ LTL LR +
Sbjct: 147 HPLGKNMIGNFYQPEAVIYDTQFFATLPERELRSG---FAEMIKHALISDLTL---LRAL 200
Query: 760 LDALRKPADSKMFVFGTKALEQFVDRLIE 788
+D +P D F TK L F+ R IE
Sbjct: 201 MDTFTEPKD-----FYTKDLTPFLQRGIE 224
>sp|A6LSY5|HEM3_CLOB8 Porphobilinogen deaminase OS=Clostridium beijerinckii (strain ATCC
51743 / NCIMB 8052) GN=hemC PE=3 SV=1
Length = 291
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 18/163 (11%)
Query: 1326 IVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMV-----ASLAGSLAHVTCK 1380
+ G + VS+A K L +KD + E R A H M S +A +T +
Sbjct: 39 VTEGDRKLDVSLAKIGGKGLFVKDIEIALLEKRADGAVHSMKDVPYELSHEFEIAAITER 98
Query: 1381 EPLRGSISSQ----LRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIE---QAATDKAI 1433
E +R + S+ + +G I + + +A QL N DL I Q +K
Sbjct: 99 EDIRDVLISKDNIPFKELRKGAIIGTSSIRRACQLKLMRN-DLDIVPIRGNVQTRLEKMK 157
Query: 1434 -QTIDGEIAQQLSLRRKHREGVGSSFFDPNIY----AQGSMGV 1471
Q +DG I L+R + E + + +FDP ++ AQG++G+
Sbjct: 158 EQNLDGIILASAGLKRLNEEDIITEYFDPKVFIPAVAQGALGI 200
>sp|Q7D5C5|PPE62_MYCTU Uncharacterized PPE family protein PPE62 OS=Mycobacterium
tuberculosis GN=ppe62 PE=3 SV=1
Length = 582
Score = 39.7 bits (91), Expect = 0.28, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 1498 WQNQSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQG------YSSSAGSTGF-DAVS 1550
W N + A +AGSL ++G A + G G GN G +++ GS+GF + S
Sbjct: 465 WSNSGLTNTGAFNAGSL-NTGFGAVGTGSGPNSGFGNAGTNNSGFFNTGVGSSGFQNGGS 523
Query: 1551 RPSDVASGTTESTSAGFLSTSLVHIGAADGGILHN 1585
S + + +AGF +T +G A+ G+L++
Sbjct: 524 NNSGLQNAVGTVIAAGFGNTGAQTVGIANSGVLNS 558
>sp|Q09693|DPO4_SCHPO DNA polymerase type-X family protein pol4 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pol4 PE=3 SV=1
Length = 506
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 325 NTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAV 368
N N ++ ++N+D EG PT + + + + + +YACQ PL V
Sbjct: 135 NNNEVKSIDNVDQEGSVYPTTKEYPYVLEIPRYACQRKTPLKCV 178
>sp|Q7Z5P9|MUC19_HUMAN Mucin-19 OS=Homo sapiens GN=MUC19 PE=1 SV=2
Length = 6254
Score = 38.1 bits (87), Expect = 0.72, Method: Composition-based stats.
Identities = 47/191 (24%), Positives = 74/191 (38%), Gaps = 24/191 (12%)
Query: 1455 GSSFFDPNIYAQG----SMGVPEALRPKPGHLSVSQQRVYEDFVRLP------WQNQSSQ 1504
GS P++ G S+GV A PG + E P QS Q
Sbjct: 1642 GSGTTGPSVVRSGTTRLSVGVTRATESSPGVTGTTTPSAEESRTTGPSVLVTGTTGQSGQ 1701
Query: 1505 GSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGTTESTS 1564
GS + S SG + S G + G ++A ST + ++PS +GTT +
Sbjct: 1702 GS-GTTGKSFIESGPSVVGSG---TTGPTSAGLGTTAPSTRRSSTTKPSVGRTGTTGQSG 1757
Query: 1565 AGFLSTSLVHIGAADGGILHNSESESVNAAFTPAATELYAADSTEPVKEPGASSQSLPST 1624
A + A G+ S V+ P+ATE + ++ P+ E + ++PS
Sbjct: 1758 A---ESGTTEPSARVAGV--TGTSAEVSGRIEPSATE---SSTSRPLGE--TTGTTIPSM 1807
Query: 1625 AAPERIGSSIL 1635
E G S++
Sbjct: 1808 EGSEATGPSVI 1818
>sp|A5DUP0|U507_LODEL UPF0507 protein LELG_01076 OS=Lodderomyces elongisporus (strain ATCC
11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239)
GN=LELG_01076 PE=3 SV=1
Length = 1260
Score = 36.2 bits (82), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 942 KFGSALNIETLVAAAERRETPIEAPASE--VQDKISFIINNISALNVEAKAKEFTEILKE 999
K+G N+E+++A R + E P++ + D +SF+ + NVE K+ E
Sbjct: 781 KYGRLENLESILAD-NRLDFLAEDPSTHYNIFDYLSFLAGRYAKENVEKIEKKLIEFYFS 839
Query: 1000 QYYPWFAQY-MVMKRASIEPNFHDLYLKF 1027
Y+P+ A Y +V +P+ D Y+ +
Sbjct: 840 HYFPFEAHYKLVALNGKYDPSTRDWYIYY 868
>sp|P56342|PSAB_CHLVU Photosystem I P700 chlorophyll a apoprotein A2 OS=Chlorella vulgaris
GN=psaB PE=3 SV=1
Length = 734
Score = 35.0 bits (79), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 1698 KGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTS 1733
KGLY+ +N+LHF LA LA++ +C LV + + S
Sbjct: 320 KGLYDTVNNSLHFQLGLA-LASVGTICSLVAQHMYS 354
>sp|Q9Y2D5|AKAP2_HUMAN A-kinase anchor protein 2 OS=Homo sapiens GN=AKAP2 PE=1 SV=3
Length = 859
Score = 34.7 bits (78), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 73/171 (42%), Gaps = 25/171 (14%)
Query: 1195 GASQPQLVPEVKPAIVSPLGHV--DLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLMED 1252
G S P+L +KP PLG V D PL PP+ GGP AA + S G L
Sbjct: 343 GQSTPRLF-SIKP-FYRPLGSVNSDKPLTNPRPPSVGGPPEDSGASAAKGQKSPGAL--- 397
Query: 1253 EKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNI----GTHVIINQKLTAL--- 1305
E +A G +QG + + P+S P+ + G LT +
Sbjct: 398 ETPSAAG-------SQGNTASQGKEGPYSEPSKRGPLSKLWAEDGEFTSARAVLTVVKDD 450
Query: 1306 --GLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMES 1354
G+ F R V +++ + +E+ SG+ + SV T E + D++M++
Sbjct: 451 DHGILDQFSRSVNVSLTQ--EELDSGLDELSVRSQDTTVLETLSNDFSMDN 499
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 713,277,910
Number of Sequences: 539616
Number of extensions: 29482505
Number of successful extensions: 92842
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 114
Number of HSP's that attempted gapping in prelim test: 91455
Number of HSP's gapped (non-prelim): 1104
length of query: 2067
length of database: 191,569,459
effective HSP length: 133
effective length of query: 1934
effective length of database: 119,800,531
effective search space: 231694226954
effective search space used: 231694226954
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 69 (31.2 bits)