Query 000137
Match_columns 2067
No_of_seqs 202 out of 273
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 19:12:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000137.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000137hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gmj_A CCR4-NOT transcription 100.0 3.3E-81 1.1E-85 701.7 20.3 218 966-1183 3-222 (229)
2 4b89_A General negative regula 100.0 3.2E-81 1.1E-85 704.5 16.4 219 961-1181 25-243 (249)
3 4b8b_A General negative regula 100.0 8.4E-79 2.9E-83 748.7 34.0 485 314-820 89-598 (603)
4 3rk6_A Polyadenylate-binding p 80.1 3.9 0.00013 47.1 8.6 187 967-1161 16-232 (234)
5 2vso_E Eukaryotic initiation f 74.7 10 0.00034 44.8 10.3 194 965-1161 31-275 (284)
6 1hu3_A EIF4GII; heat repeat, t 68.1 6.5 0.00022 45.8 6.7 187 968-1161 9-235 (260)
7 2rg8_A Programmed cell death p 32.0 2E+02 0.0067 31.3 10.3 89 666-765 6-94 (165)
8 2ion_A PDCD4, programmed cell 25.4 2.6E+02 0.009 29.9 9.7 90 667-765 6-95 (152)
9 1h2v_C 80 kDa nuclear CAP bind 23.7 1.6E+02 0.0054 39.6 9.2 106 966-1079 4-117 (771)
10 1uw4_B UPF2, regulator of nons 23.4 2.1E+02 0.007 33.3 8.9 124 12-169 8-133 (248)
11 2nsz_A Programmed cell death p 22.7 3.4E+02 0.012 28.0 9.7 90 667-765 4-93 (129)
No 1
>4gmj_A CCR4-NOT transcription complex subunit 1; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} PDB: 4gml_A
Probab=100.00 E-value=3.3e-81 Score=701.67 Aligned_cols=218 Identities=48% Similarity=0.855 Sum_probs=214.8
Q ss_pred CChhhhhhHhhhhhccChhhHHHHHHHHHHHhhhcChhhhhHHHHhhhcccCCchhHHHHHHHHHhCChhHHHHHHHHHH
Q 000137 966 PASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATY 1045 (2067)
Q Consensus 966 P~e~v~dKI~FiiNNls~~Nl~~K~~El~~~L~~~y~~WFA~YLV~kRas~EpN~H~LY~~fld~l~~~~L~~~il~~Ty 1045 (2067)
++|+|+|||+|||||+|++|+++|++|+|++|+++||+|||+|||++|||+|||||+||++|+++++++.|+++|+++||
T Consensus 3 ~de~v~dki~Fi~NNls~~N~~~k~~elk~~l~~~y~~Wfa~YLV~~Ras~EpN~h~lY~~fl~~l~~~~l~~~vl~~T~ 82 (229)
T 4gmj_A 3 LEENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETY 82 (229)
T ss_dssp SCHHHHHHHHHHHHSCCSSTHHHHHHHHHHHSCGGGHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CcHHhhhhheeehhcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcchhcccChHHHHHHHHhhHhHhhhhhhcCcccccCCCChhHHHHHHHhcCc--eeEEechhhhhcccccCCc
Q 000137 1046 ENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSL 1123 (2067)
Q Consensus 1046 ~~i~~LL~se~~~~~s~eRslLKNLGsWLG~iTLarNkPI~~k~ld~K~LL~eaY~~g~--L~~VIPFV~KVLe~~~~S~ 1123 (2067)
++|++||++++++.+++||++|||||+|||+|||||||||+||+||+|+||+|||++|. |++|||||||||++|++|+
T Consensus 83 ~~i~~LL~s~~~~~~~~eR~~LKNLG~WLG~lTLarnkPI~~~~l~~K~LL~eay~~g~~rL~~viPFVcKvLe~~~~S~ 162 (229)
T 4gmj_A 83 RNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSV 162 (229)
T ss_dssp HHHHHHHTSCCCTTCHHHHHHHHHHHHHHHHHTGGGTCCCCTTTCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHTTTTCT
T ss_pred HHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHccCCCchhcccCHHHHHHHHHHCCCceEEEeehhHHHHHHhcccCC
Confidence 99999999999999999999999999999999999999999999999999999999995 9999999999999999999
Q ss_pred cccCCCccHHHHHHHHHHHhcCCccchhhHHHHHHHHhhcCCCccccccccccccchhhh
Q 000137 1124 AYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREI 1183 (2067)
Q Consensus 1124 vFkPPNPWtm~IL~lL~Ely~~~~LKlnLKFEIEVL~K~L~ld~~di~ps~~L~~r~~~~ 1183 (2067)
|||||||||||||++|+|||++|+||+|||||||||||+|++|++||+|+++|++|++..
T Consensus 163 iFkPPNPW~~~IL~lL~Ely~~~~lKlnlkFEIEvLfk~l~~~~~~i~ps~~l~~~~~~~ 222 (229)
T 4gmj_A 163 VFRPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLK 222 (229)
T ss_dssp TTSTTCHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTTCCGGGSCCCSGGGCSTTGG
T ss_pred cCCCCChhHHHHHHHHHHHHhCccchhhHHHHHHHHHHHcCCChhhcCchhhhhccchhc
Confidence 999999999999999999999999999999999999999999999999999999988753
No 2
>4b89_A General negative regulator of transcription subun; 1.50A {Saccharomyces cerevisiae S288C} PDB: 4b8a_A 4b8c_B
Probab=100.00 E-value=3.2e-81 Score=704.46 Aligned_cols=219 Identities=34% Similarity=0.659 Sum_probs=211.0
Q ss_pred CCcCCCChhhhhhHhhhhhccChhhHHHHHHHHHHHhhhcChhhhhHHHHhhhcccCCchhHHHHHHHHHhCChhHHHHH
Q 000137 961 TPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREI 1040 (2067)
Q Consensus 961 ~~~~~P~e~v~dKI~FiiNNls~~Nl~~K~~El~~~L~~~y~~WFA~YLV~kRas~EpN~H~LY~~fld~l~~~~L~~~i 1040 (2067)
..++.||++|+|||+|||||+|++|+++|++|+|++|+++||+|||+|||++|||+|||||+||++|+++++++.|+++|
T Consensus 25 ~~~e~P~~~v~dki~Fi~NNls~~Nl~~k~~el~~~l~~~y~~WFA~YLV~~Ra~~EpN~H~lY~~~l~~l~~~~L~~~v 104 (249)
T 4b89_A 25 INQEGAPKDVVEKVLFVLNNVTLANLNNKVDELKKSLTPNYFSWFSTYLVTQRAKTEPNYHDLYSKVIVAMGSGLLHQFM 104 (249)
T ss_dssp SCCCCCCHHHHHHHHHHHHHCCTTTHHHHHHHHHHHCCGGGHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHTCHHHHHHH
T ss_pred ccCCCcCHHHHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHhCCHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcchhcccChHHHHHHHHhhHhHhhhhhhcCcccccCCCChhHHHHHHHhcCceeEEechhhhhccccc
Q 000137 1041 VQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQ 1120 (2067)
Q Consensus 1041 l~~Ty~~i~~LL~se~~~~~s~eRslLKNLGsWLG~iTLarNkPI~~k~ld~K~LL~eaY~~g~L~~VIPFV~KVLe~~~ 1120 (2067)
+++||++|++||+++++ +++||++|||||+|||+|||||||||+||+||+|+||+|||++|+|.+|||||||||++|+
T Consensus 105 l~~T~~~i~~LL~~~~i--~~~eRs~LKNLG~WLG~iTLarNkPI~~~~ld~K~LL~eay~~g~L~~vIPFVcKvLe~~k 182 (249)
T 4b89_A 105 VNVTLRQLFVLLSTKDE--QAIDKKHLKNLASWLGCITLALNKPIKHKNIAFREMLIEAYKENRLEIVVPFVTKILQRAS 182 (249)
T ss_dssp HHHHHHHHHHHHTBSCG--GGSCHHHHHHHHHHHHHHTGGGTCCCCTTTBCHHHHHHHHHHHTCHHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHhhhccc--ChHHHHHHHHHHHHHhHHHHhcCCCchhcccCHHHHHHHHHHcCCeEEEeeHHHHHHHhcc
Confidence 99999999999999876 4789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCccHHHHHHHHHHHhcCCccchhhHHHHHHHHhhcCCCccccccccccccchh
Q 000137 1121 SSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKR 1181 (2067)
Q Consensus 1121 ~S~vFkPPNPWtm~IL~lL~Ely~~~~LKlnLKFEIEVL~K~L~ld~~di~ps~~L~~r~~ 1181 (2067)
+|+||||||||||+||++|+|||++|+||+|||||||||||+|++|++||+|+++|+++++
T Consensus 183 ~SkiFkPPNPWt~~IL~lL~Ely~~~~LKlnlkFEIEvL~k~l~l~l~~i~ps~~l~~~~~ 243 (249)
T 4b89_A 183 ESKIFKPPNPWTVGILKLLIELNEKANWKLSLTFEVEVLLKSFNLTTKSLKPSNFINTPEV 243 (249)
T ss_dssp TCSSSSTTCHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCCGGGSCCCCCC-----
T ss_pred cCCccCCCCchHHHHHHHHHHHHhCcchhHhHHHHHHHHHHHcCCChHhCCcccccCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999998765
No 3
>4b8b_A General negative regulator of transcription subun; 2.80A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=8.4e-79 Score=748.66 Aligned_cols=485 Identities=21% Similarity=0.321 Sum_probs=377.3
Q ss_pred HHHHHHHhhCC-CCCHHHHHHhc-----CCCCCCCCChhhHHHHHHHHhhhcCCCcccccccCCccc-ChhhhHHHHHHH
Q 000137 314 VLVKAIKQLAP-NTNWIRVVENL-----DYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWK-NTEGQLSFLRYA 386 (2067)
Q Consensus 314 vlv~alk~~~p-~lnW~~Vi~~l-----D~~~f~i~d~~~l~ll~~~~~~~~~~~Fpi~~l~~~~W~-N~~~Qlsfl~~~ 386 (2067)
-+-.+++.+.. ++||.+|+..+ |. .-.-|...++.-+++++..+ -+|+.++...|. .=.-.|.++=|-
T Consensus 89 q~~~~~~~~~~~~inW~~vFnlms~~~f~~-~~~~pt~asls~~~~~L~~~----~liD~F~~~dw~~~f~~~l~~~L~~ 163 (603)
T 4b8b_A 89 VIARSISSLQANQINWNRVFNLMSTKYFLS-APLMPTTASLSCLFAALHDG----PVIDEFFSCDWKVIFKLDLAIQLHK 163 (603)
T ss_dssp HHHHHHHTSCGGGSCHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHCSH----HHHHHHHHSCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHhccccccCHHHHHHHHHHHHHhc-CCCCccHHHHHHHHHHcCCC----chHHHHHcCcchHhHhHHHHHHHHh
Confidence 34566777755 89999999875 32 22345666777788877642 456666655664 344455555555
Q ss_pred hhCCCCccccCcCc-cccccccCCCCccccccccccccchHHHHHHHHH---hhhcCchHHHHHHhhhhhhcChhHHHHH
Q 000137 387 VASPPEVFTFAHSA-RQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQ---LSEMGHASFARSMLEYPLKQCPEMLLLG 462 (2067)
Q Consensus 387 l~~p~~~f~f~~~~-~~~v~~d~~~~~~~~~~~~~~~W~sldL~e~L~~---Lae~~~~~~v~~l~e~p~k~~pe~lllg 462 (2067)
.+.--.-|++..++ -+.++- ..++.+.. --.--.=.+||+ +.++. ++++..-....+.|+.-.+..||.+.++
T Consensus 164 ~~~~qg~~dl~~~~~~~~~~~-~~p~~~~~-ll~~~si~~l~l-~~~~~~~~~~~~~~~~~~~~~f~~d~~~~Peylal~ 240 (603)
T 4b8b_A 164 WSVQNGCFDLLNAEGTRKVSE-TIPNTKQS-LLYLLSIASLNL-ELFLQREELSDGPMLAYFQECFFEDFNYAPEYLILA 240 (603)
T ss_dssp CCTTTTCCCGGGCTTCCBSCS-SSCCCSCC-GGGBHHHHHHHH-HHHHTTTTSCCCHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred cCccCCchhhhcCCCceeccc-CCCCcccc-eeeeeehhhhhH-HHHHHHHHhccchhHHHHHHHHhhhhccCHHHHHHH
Confidence 54323355555555 233332 21111100 000011123333 22222 2222223456789999999999999777
Q ss_pred HhccCcch------hHHHHHHHHhhhHHhHcCCCch-HHHHHHhhcCchhhHHHHHHhhhcCCccHHHHHHHHHHhhhhh
Q 000137 463 MAHINTAY------NLIQYEVSFAVFPMIIKSTMSN-GMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILS 535 (2067)
Q Consensus 463 l~~i~~~~------~~l~~ell~~l~~~fl~~~~~~-~vi~~lW~~~~~~~~~~l~d~y~~d~~~l~rIldvaqelk~L~ 535 (2067)
+..-.+.| ..+.+|++-.||-..+...+.+ .-+.+.+. ++.-++......+++|+.+++|++|||+|+|||+
T Consensus 241 ~~~~~k~~~~~~en~~~i~~l~~~l~~~~~~~~~~~l~~~i~~~~-~~~k~~~~~~~Ii~kD~~~l~rildi~~elk~L~ 319 (603)
T 4b8b_A 241 LVKEMKRFVLLIENRTVIDEILITLLIQVHNKSPSSFKDVISTIT-DDSKIVDAAKIIINSDDAPIANFLKSLLDTGRLD 319 (603)
T ss_dssp HHHTHHHHHHHHCCHHHHHHHHHHHHHHHHHSCGGGHHHHHHHCC-CHHHHHHHHHHHHHHSCSCCSHHHHHHHHTTCHH
T ss_pred HHhhccccccccccchHHHHHHHHHHHHHHhcChHHHHHHHHHcc-ChhHHHHHHHHHHhcCchhHHHHHHHHHHhChHH
Confidence 77544444 4566788888887777544433 23444454 4445558888899999999999999999999999
Q ss_pred hhhccCCchhHHHHHHHhhcccccCHHHHHHHHhhcCcchHHHHHHHHHHHHhhcccccccCCCCCCCcccccccchhHH
Q 000137 536 SVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIP 615 (2067)
Q Consensus 536 ~ll~~~pf~f~idLA~lAsrre~l~lekWL~~~l~~~~~~f~~a~l~FL~~k~~~~~~~~~~~~~~~~~~~~~L~~etv~ 615 (2067)
.||+..||.||+|+|++|+||||+|||+|++++++.+|.+ +|++||+.|+..+. +.. +.++...|.++|++
T Consensus 320 ~lL~~~p~~faldLAalAs~rg~lnLe~WL~~~l~~~~~~---~lL~FL~~K~~~e~----~~~--~~~~~~~L~i~tv~ 390 (603)
T 4b8b_A 320 TVINKLPFNEAFKILPCARQIGWEGFDTFLKTKVSPSNVD---VVLESLEVQTKMTD----TNT--PFRSLKTFDLFAFH 390 (603)
T ss_dssp HHHHHSCTTHHHHTHHHHHHHTCCCHHHHHHHHCCTTTHH---HHHHHHHHHHHCCC----C----CSCTTTSCCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHhhcCch---HHHHHHHHHhhccc----cCC--CCCCCceecHHHHH
Confidence 9999999999999999999999999999999999999976 99999999997651 111 22233558889999
Q ss_pred HHHHHHHhhhCCCCchHHHHHHHHHHHHhhccCCCCCCCC-CCCC-----CCCCCCchhHHHHHHHHHHHhhccCCCHHH
Q 000137 616 VILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGE-AADS-----STSEGYADDIEAEANSYFHQMFSGQLTIEA 689 (2067)
Q Consensus 616 ~ll~~L~~~~~~~~s~~~~e~l~~~~~~~l~~~PRL~n~~-~~d~-----~~~~~f~~dVE~Ean~yfqkmY~~eisI~~ 689 (2067)
+||++|++. .++.+..+++++++..|+++||||+|+| |||+ +.++.||+|||+|||+||||||++++||++
T Consensus 391 ~lLk~L~~~---~l~~e~~e~l~~vq~~~lq~yPRLiN~G~G~D~~i~an~~~~~~~~dIE~ean~yfqkmY~~eisI~~ 467 (603)
T 4b8b_A 391 SLIEVLNKC---PLDVLQLQRFESLEFSLLIAFPRLINFGFGHDEAILANGDIAGINNDIEKEMQNYLQKMYSGELAIKD 467 (603)
T ss_dssp HHHHHHHTS---CCCHHHHHHHHHHHHHHHHHCGGGTTTTSSCHHHHHTTCSSSCCCHHHHHHHHHHHHHHHTTSSCHHH
T ss_pred HHHHHHHhc---CCChHHHHHHHHHHHHHHHhCchhhcCCCcchhhhhccCCCCCCCHHHHHHHHHHHHHHHcCCCCHHH
Confidence 999999853 4678889999999999999999999996 7875 356789999999999999999999999999
Q ss_pred HHHHHHHhhcCCcccchhhHHHHHHhhhhhhccCCCCcHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHhcCCCCC
Q 000137 690 MVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADS 769 (2067)
Q Consensus 690 iv~~L~~~k~S~~~rdqdvFaCMih~LFdEYrff~~YP~~eL~~TA~LFG~lI~~~Lv~~~~L~iALr~ILeAlr~p~~s 769 (2067)
+|++|+|||+|+++||||||+||||+||||||||++||++||++||+|||+||+|+||++.+|++||||||||||+|++|
T Consensus 468 iV~~L~~~K~S~~~rdqdvFaCMIh~LFdEyrff~~YP~~eL~iTA~LFG~LI~~~Ll~~~~L~iALr~ILeAlrkp~~s 547 (603)
T 4b8b_A 468 VIELLRRLRDSDLPRDQEVFTCITHAVIAESTFFQDYPLDALATTSVLFGSMILFQLLRGFVLDVAFRIIMRFAKEPPES 547 (603)
T ss_dssp HHHHHHHHHTCCSHHHHHHHHHHHHHHHHHGGGGGGSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTSCTTS
T ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcccCcchHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHhhhhhhHHHHHHh-cccccccccHHHHHHHHHHHHhh
Q 000137 770 KMFVFGTKALEQFVDRLIEWPQYCNHIL-QISHLRSTHAELVAFIERALARI 820 (2067)
Q Consensus 770 kmf~FGi~AL~~F~~RL~ewPqyC~~Ll-~ip~L~~~~p~l~~~i~~~l~~~ 820 (2067)
|||+||++||++|++||+|||+||.+++ +|||| +++|+||++|+++.+++
T Consensus 548 kmf~FGi~ALeqF~~RL~ewPqyc~~lL~~ip~l-q~~P~l~q~i~~~a~~~ 598 (603)
T 4b8b_A 548 KMFKFAVQAIYAFRIRLAEYPQYCKDLLRDVPAL-KSQAQVYQSIVEAATLA 598 (603)
T ss_dssp HHHHHHHHHHHHTGGGGGGCHHHHHHHHHHCGGG-GGCHHHHHHHHHTTC--
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCc-ccChHHHHHHHHHHcCC
Confidence 9999999999999999999999997766 79999 58999999999986533
No 4
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=80.06 E-value=3.9 Score=47.15 Aligned_cols=187 Identities=16% Similarity=0.210 Sum_probs=113.5
Q ss_pred ChhhhhhHhhhhhccC--hhhHHHHHHHHHHHhh-----hcChhhhhHHHHhhhcccCCchhHHHHHHHHHhCCh-----
Q 000137 967 ASEVQDKISFIINNIS--ALNVEAKAKEFTEILK-----EQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSK----- 1034 (2067)
Q Consensus 967 ~e~v~dKI~FiiNNls--~~Nl~~K~~El~~~L~-----~~y~~WFA~YLV~kRas~EpN~H~LY~~fld~l~~~----- 1034 (2067)
++++..||..|+|-|| ++|++.-++++.+.+. ++...-+..-++ +.|-.||||-.+|.++...|...
T Consensus 16 ~~~l~r~v~~iLNkLT~~p~~f~~l~~~i~~~~~~~~~~~~~L~~vi~lIf-ekAi~ep~fs~~YA~LC~~l~~~l~~~~ 94 (234)
T 3rk6_A 16 GSTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIY-QQATSIPNFSYMGARLCNYLSHHLTISP 94 (234)
T ss_dssp --CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH-HHHHSSTTCHHHHHHHHHHHHHHCCCCC
T ss_pred hHHHHHHHHHHHHHccCChhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHHHhCcccHHHHHHHHHHHHHhcCCCC
Confidence 4689999999999999 9999999999888753 234556666555 45889999999999999988652
Q ss_pred ---hHHHHHHH---HHHHHHHHHhcchhcccChHHHHHHHHhhHhHhhhhhhcC------cccccCCC---ChhHHHHHH
Q 000137 1035 ---ALNREIVQ---ATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRN------QVLRAREI---DPKSLIIEA 1099 (2067)
Q Consensus 1035 ---~L~~~il~---~Ty~~i~~LL~se~~~~~s~eRslLKNLGsWLG~iTLarN------kPI~~k~l---d~K~LL~ea 1099 (2067)
.+.+..|+ +-|++-..... .+...|...-+.--++|-+-.-.+ +++ +-.| .+++||-.-
T Consensus 95 ~~~~Fr~lLL~rcQ~eFe~~~~~~~-----~d~~~k~r~lg~i~FIgELf~~l~~~~~~~~~l-~e~I~~~ci~~Ll~~l 168 (234)
T 3rk6_A 95 QSGNFRQLLLQRCRTEYEVKDQAAK-----GDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVT-RADILQVGLRELLNAL 168 (234)
T ss_dssp TTCCHHHHHHHHHHHHHTTHHHHTS-----SCHHHHHHHHHHHHHHHHHHHHCCEECTTSSEE-CCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhhHHhhh-----ccHHHHHHHHHHHHHHHHHHhhhcccccccchh-HHHHHHHHHHHHHHhc
Confidence 14444443 23333222222 121223323233336777765422 333 3222 356665432
Q ss_pred HhcCceeEEechhhhhcccccCCcc---ccCCCccHHHHHHHHHHHhcCCccchhhHHHHHHHHh
Q 000137 1100 YEKGLMIAVIPFTSKILEPCQSSLA---YQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFK 1161 (2067)
Q Consensus 1100 Y~~g~L~~VIPFV~KVLe~~~~S~v---FkPPNPWtm~IL~lL~Ely~~~~LKlnLKFEIEVL~K 1161 (2067)
.++ .-.--|-.+|++|..|-+.-= +.--.++.-.++.-|.+|.+.+++--.++|=|+.|+.
T Consensus 169 ~~~-p~ee~vE~l~~lL~tvG~~Ld~~~~~~~~~~md~~f~rl~~i~~~~~ls~Rirfml~dlie 232 (234)
T 3rk6_A 169 FSN-PMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVE 232 (234)
T ss_dssp HHS-CCHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred cCC-CChHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 222 111223344555554321100 0011368889999999999999999999999998874
No 5
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=74.70 E-value=10 Score=44.85 Aligned_cols=194 Identities=12% Similarity=0.126 Sum_probs=111.6
Q ss_pred CCChhhhhhHhhhhhccChhhHHHHHHHHHHHhhhc-------ChhhhhHHHHhhhcccCCchhHHHHHHHHHhCCh---
Q 000137 965 APASEVQDKISFIINNISALNVEAKAKEFTEILKEQ-------YYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSK--- 1034 (2067)
Q Consensus 965 ~P~e~v~dKI~FiiNNls~~Nl~~K~~El~~~L~~~-------y~~WFA~YLV~kRas~EpN~H~LY~~fld~l~~~--- 1034 (2067)
...+++..||..|+|-||++|++.=+.+|.++-... -..=+.. +|.+.|-.||+|=.+|.+|+..|...
T Consensus 31 ~~~e~l~r~vkgiLNKLT~~nf~~i~~ql~~~~~~~~~~~~~~~l~~vi~-~If~kA~~ep~fs~~YA~Lc~~l~~~l~~ 109 (284)
T 2vso_E 31 LDKDEVERKMKSLLNKLTLEMFDAISSEILAIANISVWETNGETLKAVIE-QIFLKACDEPHWSSMYAQLCGKVVKELNP 109 (284)
T ss_dssp CCHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHGGGGCSBCHHHHHHHH-HHHHHHHHCGGGHHHHHHHHHHHHHHSCT
T ss_pred ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhccccCcHHHHHHHHH-HHHHHHHcCcchHHHHHHHHHHHHHhcCc
Confidence 356889999999999999999999999998875321 1122333 45677999999999999999987532
Q ss_pred -------------h-HHHHHHHHHHHHHHHHhcchhcccC------------------hHHHHHHHHhhHhHhhhhhhcC
Q 000137 1035 -------------A-LNREIVQATYENCKVLLGSELIKSS------------------SEERSLLKNLGSWLGKLTIGRN 1082 (2067)
Q Consensus 1035 -------------~-L~~~il~~Ty~~i~~LL~se~~~~~------------------s~eRslLKNLGsWLG~iTLarN 1082 (2067)
. +.+.+|+.....-..... ++.... ...|..--|+-.++|-+-.-+=
T Consensus 110 ~i~~e~~~~k~g~~~Fr~~LL~rcq~eFe~~~~-~~~~~~~~~~~~e~e~~~~e~~~~~~~k~r~lg~i~FIgeLyk~~~ 188 (284)
T 2vso_E 110 DITDETNEGKTGPKLVLHYLVARCHAEFDKGWT-DKLPTNEDGTPLEPEMMSEEYYAAASAKRRGLGLVRFIGFLYRLNL 188 (284)
T ss_dssp TCCBCC---CCTHHHHHHHHHHHHHHHHHHCCC-SSCC------------CCTTHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHhhhhh-hhhhhccccchhhhhhhhhHHHHHHHHHHHHhhHHHHHHHHHhccC
Confidence 1 223333322221111110 100000 0112222233466666543211
Q ss_pred cccccCCCChhHHHHHHHhcCceeEEechhhhhcccccCCccccCC---------CccHHHHHHHHHHHhcCCccchhhH
Q 000137 1083 QVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPP---------NPWTMAILGLLAEIYSMPNLKMNLK 1153 (2067)
Q Consensus 1083 kPI~~k~ld~K~LL~eaY~~g~L~~VIPFV~KVLe~~~~S~vFkPP---------NPWtm~IL~lL~Ely~~~~LKlnLK 1153 (2067)
-+-+.=.-.++.||- .+...-=.--|=.+|++|..|...-=-.+| -+..-.++..|.++-+.+++---++
T Consensus 189 l~~~i~~~ci~~LL~-~~~~~p~e~~iE~l~~lL~tvG~~Ld~~~~~~~~~~~~~~~~md~~f~~l~~l~~~~~ls~Rir 267 (284)
T 2vso_E 189 LTGKMMFECFRRLMK-DLTDSPSEETLESVVELLNTVGEQFETDSFRTGQATLEGSQLLDSLFGILDNIIQTAKISSRIK 267 (284)
T ss_dssp SCHHHHHHHHHHHHH-HHHSCCCHHHHHHHHHHHHHHHHHHTSCC--------CHHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred CcHHHHHHHHHHHhc-cCCCCCCHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 110000112444543 222111122356678888877544222222 2588889999999988888888999
Q ss_pred HHHHHHHh
Q 000137 1154 FDIEVLFK 1161 (2067)
Q Consensus 1154 FEIEVL~K 1161 (2067)
|=||.++.
T Consensus 268 Fml~dlid 275 (284)
T 2vso_E 268 FKLIDIKE 275 (284)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998874
No 6
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=68.15 E-value=6.5 Score=45.83 Aligned_cols=187 Identities=14% Similarity=0.145 Sum_probs=108.4
Q ss_pred hhhhhhHhhhhhccChhhHHHHHHHHHHHhh--hcChhhhhHHHHhhhcccCCchhHHHHHHHHHhCC---hh-------
Q 000137 968 SEVQDKISFIINNISALNVEAKAKEFTEILK--EQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNS---KA------- 1035 (2067)
Q Consensus 968 e~v~dKI~FiiNNls~~Nl~~K~~El~~~L~--~~y~~WFA~YLV~kRas~EpN~H~LY~~fld~l~~---~~------- 1035 (2067)
+.+..+|..|+|-||++|++.=+.++.++-- ++-..=+. -+|.+.|..||+|=.+|.+|+..|+. |.
T Consensus 9 ~~l~r~v~giLNKLT~~nf~~i~~ql~~~~i~~~~~l~~vi-~~if~kA~~ep~f~~~YA~Lc~~L~~~~~p~~~~~~~~ 87 (260)
T 1hu3_A 9 QELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVI-DLVFEKAIDEPSFSVAYANMCRCLVTLKVPMADKPGNT 87 (260)
T ss_dssp HHHHHHHHHHHTCSSCCCHHHHHHHHTTCCCCSHHHHHHHH-HHHHHHHHHCGGGHHHHHHHHHHHTTCCCC--------
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCHHHHHHHH-HHHHHHHHcCchHHHHHHHHHHHHHHhhCCcccCCccc
Confidence 5788999999999999999988888765311 11111122 35778899999999999999999975 11
Q ss_pred --HHHHHHHH---HHHHHHHHhc--chhcc-----cChHHH---------------HHHHHhhHhHhhhhhhcCcccccC
Q 000137 1036 --LNREIVQA---TYENCKVLLG--SELIK-----SSSEER---------------SLLKNLGSWLGKLTIGRNQVLRAR 1088 (2067)
Q Consensus 1036 --L~~~il~~---Ty~~i~~LL~--se~~~-----~~s~eR---------------slLKNLGsWLG~iTLarNkPI~~k 1088 (2067)
+.+.+|+. .|++...-.. .++.+ ..+.|| ..--|+-.++|-+-.-+=-+-+.=
T Consensus 88 ~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~ee~~~~~k~r~lg~i~FIgeLy~~~~l~~~i~ 167 (260)
T 1hu3_A 88 VNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIM 167 (260)
T ss_dssp -CHHHHHHHHHHHHHHHHTC------------------------------CCSSHHHHHHHHHHHHHHHHTTTCSCHHHH
T ss_pred hHHHHHHHHHHHHHHhcccchhhhHHHHhhhhcccCCHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCHHHH
Confidence 23344432 2332211000 00000 112222 222366667777765321111100
Q ss_pred CCChhHHHHHHHhcCceeEEechhhhhcccccCCccccC-CCccHHHHHHHHHHHhcCCccchhhHHHHHHHHh
Q 000137 1089 EIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQP-PNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFK 1161 (2067)
Q Consensus 1089 ~ld~K~LL~eaY~~g~L~~VIPFV~KVLe~~~~S~vFkP-PNPWtm~IL~lL~Ely~~~~LKlnLKFEIEVL~K 1161 (2067)
.-.++.||- .... --|=.+|++|..|...- .++ +.+.+-.++.-|.++-+.+++---++|=||.|+.
T Consensus 168 ~~~l~~Ll~-~~~e----~~iE~l~~lL~tvG~~L-~~~~~~~~l~~~f~~l~~~~~~~~ls~Rirfmi~~l~d 235 (260)
T 1hu3_A 168 HDCVVKLLK-NHDE----ESLECLCRLLTTIGKDL-DFEKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVID 235 (260)
T ss_dssp HHHHHHHHH-SCSH----HHHHHHHHHHHHHHHHH-CCTTTHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCH----HHHHHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 112333332 1111 13556788888885542 333 3367888999999998888888899999999985
No 7
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=32.02 E-value=2e+02 Score=31.25 Aligned_cols=89 Identities=10% Similarity=0.183 Sum_probs=68.1
Q ss_pred chhHHHHHHHHHHHhhccCCCHHHHHHHHHHhhcCCcccchhhHHHHHHhhhhhhccCCCCcHHHHHHHHHHHHHhhhhh
Q 000137 666 ADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQ 745 (2067)
Q Consensus 666 ~~dVE~Ean~yfqkmY~~eisI~~iv~~L~~~k~S~~~rdqdvFaCMih~LFdEYrff~~YP~~eL~~TA~LFG~lI~~~ 745 (2067)
.+++++++++..+.+|+.. .++|.+.-++.++... .-..+....|..-||. + ++|=..+++|+-.|.. +
T Consensus 6 ~ee~~kk~~~ii~EYf~~~-D~~Ea~~~l~eL~~p~--~~~~~V~~~I~~aldr-----k--~~ere~~s~LL~~L~~-~ 74 (165)
T 2rg8_A 6 ERAFEKTLTPIIQEYFEHG-DTNEVAEMLRDLNLGE--MKSGVPVLAVSLALEG-----K--ASHREMTSKLLSDLCG-T 74 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHTCSG--GGGHHHHHHHHHHHTS-----C--HHHHHHHHHHHHHHBT-T
T ss_pred HHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHhCCcc--cHHHHHHHHHHHHHcC-----C--HHHHHHHHHHHHHHHH-C
Confidence 4678899999998888864 6899999999988433 3344555555555663 2 5555569999999965 9
Q ss_pred ccchhHHHHHHHHHHHHhcC
Q 000137 746 LVTHLTLGIALRGVLDALRK 765 (2067)
Q Consensus 746 Lv~~~~L~iALr~ILeAlr~ 765 (2067)
+++.-.+.-|+..+++.+-+
T Consensus 75 ~ls~~~i~~Gf~~lle~ldD 94 (165)
T 2rg8_A 75 VMSTTDVEKSFDKLLKDLPE 94 (165)
T ss_dssp TBCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhChh
Confidence 99999999999999988754
No 8
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=25.44 E-value=2.6e+02 Score=29.85 Aligned_cols=90 Identities=12% Similarity=0.160 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHHHhhccCCCHHHHHHHHHHhhcCCcccchhhHHHHHHhhhhhhccCCCCcHHHHHHHHHHHHHhhhhhc
Q 000137 667 DDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQL 746 (2067)
Q Consensus 667 ~dVE~Ean~yfqkmY~~eisI~~iv~~L~~~k~S~~~rdqdvFaCMih~LFdEYrff~~YP~~eL~~TA~LFG~lI~~~L 746 (2067)
+++++++++..+..|+.. .++|.+.-++.++.. ..-.++-...|..-+|.- .+++-..++.|+-.+.+.++
T Consensus 6 eel~kki~~lL~EY~~~~-D~~EA~~cl~EL~~p--~f~~e~V~~~i~~alE~~------~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 6 NHLVKEIDMLLKEYLLSG-DISEAEHCLKELEVP--HFHHELVYEAIVMVLEST------GESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp CHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHTCG--GGHHHHHHHHHHHHHHCC------SSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhCC-CHHHHHHHHHHhCCC--cchHHHHHHHHHHHHcCC------ChHHHHHHHHHHHHHHHCCC
Confidence 578899999999988864 689999999999753 223444444444445521 34666779999999999999
Q ss_pred cchhHHHHHHHHHHHHhcC
Q 000137 747 VTHLTLGIALRGVLDALRK 765 (2067)
Q Consensus 747 v~~~~L~iALr~ILeAlr~ 765 (2067)
|+.-.+.-|+.-|++.|-+
T Consensus 77 is~~q~~~Gf~~vl~~ldD 95 (152)
T 2ion_A 77 ITIDQMKRGYERIYNEIPD 95 (152)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhChH
Confidence 9999999999988887754
No 9
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=23.74 E-value=1.6e+02 Score=39.58 Aligned_cols=106 Identities=18% Similarity=0.276 Sum_probs=78.8
Q ss_pred CChhhhhhHhhhhhccCh---hhHHHHHHHHHHHhhhc---ChhhhhHHHHhhhcccCCchhHHHHHHHHHhCCh--hHH
Q 000137 966 PASEVQDKISFIINNISA---LNVEAKAKEFTEILKEQ---YYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSK--ALN 1037 (2067)
Q Consensus 966 P~e~v~dKI~FiiNNls~---~Nl~~K~~El~~~L~~~---y~~WFA~YLV~kRas~EpN~H~LY~~fld~l~~~--~L~ 1037 (2067)
|++++.++|-.+|-++.. +|+++.+.+|...|.++ +-.-|+.- +++=+.-.|.+-.+|.-++--+|.+ ++=
T Consensus 4 ~~~~~~~~l~~lI~rlge~~~~s~~~~l~~L~~~l~~~l~~~r~~i~~~-l~~~~~~~P~Kt~vyAaLVgllN~k~pe~G 82 (771)
T 1h2v_C 4 DANETEDHLESLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILRL-LCTVARLLPEKLTIYTTLVGLLNARNYNFG 82 (771)
T ss_dssp ------CHHHHHHHTTTSSCSSCHHHHHHHHHHHHHHTHHHHHHHHHHH-HHHHHHHCGGGHHHHHHHHHHHHTTCHHHH
T ss_pred CcccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHhCCCcchHHHHHHHHHHcCChhHH
Confidence 567889999999999988 99999999999999754 34455554 4566889999999999999999955 788
Q ss_pred HHHHHHHHHHHHHHhcchhcccChHHHHHHHHhhHhHhhhhh
Q 000137 1038 REIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTI 1079 (2067)
Q Consensus 1038 ~~il~~Ty~~i~~LL~se~~~~~s~eRslLKNLGsWLG~iTL 1079 (2067)
+++++.+..+.+.-|+. .+....|.+-.+|+.+.=
T Consensus 83 ~~lv~~l~~~f~~~l~~-------~~~~~~k~~lrFLa~L~n 117 (771)
T 1h2v_C 83 GEFVEAMIRQLKESLKA-------NNYNEAVYLVRFLSDLVN 117 (771)
T ss_dssp HHHHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc-------cChHHHHHHHHHHHHhcc
Confidence 88998888888887775 244566666666666643
No 10
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14
Probab=23.44 E-value=2.1e+02 Score=33.27 Aligned_cols=124 Identities=16% Similarity=0.206 Sum_probs=73.5
Q ss_pred HHHHH-HhhhhhchHHHHHHHHHHHHhcccchhHHHHhhhhccccCCCCCCCchhHHHHHHHHHHhhcC-CCccchhhhh
Q 000137 12 IRFLL-QSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGLKNPQLESVVASVFKYIMDK-PNFSTVFSQS 89 (2067)
Q Consensus 12 i~~Lv-~~l~k~n~~~~~~el~qlv~~G~ea~~~lL~~~l~~~~~~~~~~k~~~~~~Ll~~~~~~ll~k-pnf~T~lc~A 89 (2067)
||.|+ ..|+|+|++.+...|.+|==.-.|-+-++++ ||..+-- + .+..+++||..++.+-.. |.|+. .-
T Consensus 8 ir~Li~~~L~~~~~~~vlk~lrKl~W~D~e~~~~l~k-~l~~~~~----~-ky~nI~~lA~ll~~L~~~~~~~~i---~v 78 (248)
T 1uw4_B 8 VRKLLYKDLSKVTTEKVLRQMRKLPWQDQEVKDYVIC-CMINIWN----V-KYNSIHCVANLLAGLVLYQEDVGI---HV 78 (248)
T ss_dssp HHHHHHTTCSTTSHHHHHHHHHTSCTTSHHHHHHHHH-HHHCGGG----S-CGGGHHHHHHHHHHHTTTCHHHHH---HH
T ss_pred HHHHHHHHcccccHHHHHHHHHcCCCCcHHHHHHHHH-Hhcchhh----c-ccchHHHHHHHHHHHHhhChHHhh---hh
Confidence 78899 9999999999998887663122222335554 4544311 1 245788899888887654 44332 22
Q ss_pred ccCcccCHHHHHHHHhhcCCCchhHHHHhhhhccCCChHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhccc
Q 000137 90 VKITEINEQLLENLSDVLNLSLPERIGIGLALSDSENLDALMCGKNFCMAQIERLCANPVPMNSAEQIQNIIMFLQRSSD 169 (2067)
Q Consensus 90 ~~~~~~~~~fl~~ls~~L~Ls~~qev~~gLAL~~s~n~e~~~~g~~f~~~~l~el~~~~~~~~s~e~lh~il~~l~~~~g 169 (2067)
+| +.+ |+|-.||=.-+-....-|-.-.+ -|-||. |+ ..++.++|++.|+.|.. +|
T Consensus 79 VD------~vl------------E~Ir~gLE~n~~~~nQrRia~vk----yLgELY-ny-~lv~s~vIf~~Ly~li~-fg 133 (248)
T 1uw4_B 79 VD------GVL------------EDIRLGMEVNQPKFNQRRISSAK----FLGELY-NY-RMVESAVIFRTLYSFTS-FG 133 (248)
T ss_dssp HH------HHH------------HHHHHHHHHCCGGGHHHHHHHHH----HHHHHH-HT-TSSCHHHHHHHHHHHHH-TT
T ss_pred HH------HHH------------HHHHHHHhcCcHHHHHHHHHHHH----HHHHHH-Hh-cCCChHHHHHHHHHHHc-CC
Confidence 22 233 44555554433322122222222 366687 66 78899999999987754 55
No 11
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=22.69 E-value=3.4e+02 Score=28.03 Aligned_cols=90 Identities=12% Similarity=0.150 Sum_probs=67.6
Q ss_pred hhHHHHHHHHHHHhhccCCCHHHHHHHHHHhhcCCcccchhhHHHHHHhhhhhhccCCCCcHHHHHHHHHHHHHhhhhhc
Q 000137 667 DDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQL 746 (2067)
Q Consensus 667 ~dVE~Ean~yfqkmY~~eisI~~iv~~L~~~k~S~~~rdqdvFaCMih~LFdEYrff~~YP~~eL~~TA~LFG~lI~~~L 746 (2067)
+++++++++..+.+|+.. .++|.+.-++.++.. .- -.++-...|..-+|.- .+++-..++.|+-.+.+.++
T Consensus 4 eel~kki~~ll~EY~~~~-D~~Ea~~cl~eL~~p-~f-~~e~V~~~i~~alE~~------~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 4 NHLVKEIDMLLKEYLLSG-DISEAEHCLKELEVP-HF-HHELVYEAIVMVLEST------GESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp CHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHTCG-GG-HHHHHHHHHHHHHHCC------SSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCC-CHHHHHHHHHHhCCC-cc-HHHHHHHHHHHHHcCC------ChHHHHHHHHHHHHHHHCCC
Confidence 578899999999988864 689999999999743 22 3444444444445521 23556679999999999999
Q ss_pred cchhHHHHHHHHHHHHhcC
Q 000137 747 VTHLTLGIALRGVLDALRK 765 (2067)
Q Consensus 747 v~~~~L~iALr~ILeAlr~ 765 (2067)
|+.-.+.-|+.-|++.+-+
T Consensus 75 is~~q~~~Gf~~v~~~l~D 93 (129)
T 2nsz_A 75 ITIDQMKRGYERIYNEIPD 93 (129)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhhChH
Confidence 9999999999988887754
Done!