Query 000139
Match_columns 2062
No_of_seqs 650 out of 2759
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 20:16:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000139.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000139hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0391 SNF2 family DNA-depend 100.0 6E-203 1E-207 1852.8 66.7 1203 94-1442 192-1572(1958)
2 KOG0385 Chromatin remodeling c 100.0 3E-117 6E-122 1078.9 44.5 510 517-1273 159-671 (971)
3 KOG0388 SNF2 family DNA-depend 100.0 2E-112 4E-117 1019.3 55.2 617 514-1223 557-1184(1185)
4 KOG0389 SNF2 family DNA-depend 100.0 2E-102 3E-107 954.4 41.0 517 514-1218 387-913 (941)
5 KOG0384 Chromodomain-helicase 100.0 1E-102 3E-107 987.2 39.4 466 518-1219 363-837 (1373)
6 KOG0387 Transcription-coupled 100.0 3.6E-98 8E-103 917.8 40.0 488 515-1236 196-700 (923)
7 KOG0386 Chromatin remodeling c 100.0 8.8E-97 2E-101 920.5 31.6 517 514-1276 383-911 (1157)
8 PLN03142 Probable chromatin-re 100.0 4.2E-93 9.1E-98 937.9 53.1 512 515-1276 160-673 (1033)
9 KOG0392 SNF2 family DNA-depend 100.0 5.1E-89 1.1E-93 857.7 40.8 495 515-1235 966-1496(1549)
10 KOG1002 Nucleotide excision re 100.0 1.4E-76 3E-81 692.7 36.4 556 515-1234 175-790 (791)
11 KOG0390 DNA repair protein, SN 100.0 1.3E-74 2.8E-79 732.6 43.1 497 516-1235 230-749 (776)
12 KOG4439 RNA polymerase II tran 100.0 1.6E-72 3.5E-77 682.4 36.2 519 511-1234 312-900 (901)
13 KOG1015 Transcription regulato 100.0 3.7E-71 8E-76 677.5 30.2 595 513-1239 657-1322(1567)
14 COG0553 HepA Superfamily II DN 100.0 1.8E-69 3.9E-74 727.5 38.3 494 519-1233 333-863 (866)
15 KOG1016 Predicted DNA helicase 100.0 8.9E-59 1.9E-63 559.7 26.1 536 520-1217 250-873 (1387)
16 KOG1001 Helicase-like transcri 100.0 2.5E-57 5.5E-62 580.1 24.3 517 527-1215 135-672 (674)
17 KOG1000 Chromatin remodeling p 100.0 6.3E-54 1.4E-58 505.1 32.4 423 518-1212 192-622 (689)
18 PRK04914 ATP-dependent helicas 100.0 3.3E-52 7.2E-57 549.6 36.3 432 521-1220 149-632 (956)
19 KOG0383 Predicted helicase [Ge 100.0 6.1E-53 1.3E-57 532.2 10.2 383 523-1147 294-696 (696)
20 PF00176 SNF2_N: SNF2 family N 100.0 1.1E-43 2.3E-48 420.5 25.6 277 528-814 1-299 (299)
21 KOG0298 DEAD box-containing he 100.0 7.6E-39 1.6E-43 410.2 21.3 261 543-816 374-693 (1394)
22 TIGR00603 rad25 DNA repair hel 100.0 2.1E-35 4.5E-40 379.9 36.0 342 522-1202 253-616 (732)
23 PRK13766 Hef nuclease; Provisi 100.0 2.3E-30 5E-35 346.3 41.1 460 523-1210 14-496 (773)
24 COG1111 MPH1 ERCC4-like helica 99.9 1E-23 2.2E-28 254.8 36.6 148 1064-1216 346-504 (542)
25 PHA02558 uvsW UvsW helicase; P 99.9 1.2E-23 2.7E-28 268.6 35.1 127 1067-1194 329-456 (501)
26 COG1061 SSL2 DNA or RNA helica 99.9 9.9E-24 2.1E-28 265.2 33.6 364 520-1204 32-405 (442)
27 KOG1123 RNA polymerase II tran 99.9 9.4E-22 2E-26 233.7 19.9 355 507-1199 283-659 (776)
28 PRK11776 ATP-dependent RNA hel 99.8 2.5E-18 5.5E-23 218.1 31.6 121 1067-1193 229-349 (460)
29 PTZ00110 helicase; Provisional 99.8 3.1E-18 6.7E-23 221.0 32.4 124 1066-1193 361-484 (545)
30 TIGR00614 recQ_fam ATP-depende 99.8 1.3E-18 2.9E-23 221.2 28.3 105 1081-1187 225-329 (470)
31 KOG0354 DEAD-box like helicase 99.8 1E-17 2.2E-22 213.5 35.3 145 1063-1215 392-550 (746)
32 PRK11192 ATP-dependent RNA hel 99.8 9.2E-18 2E-22 211.5 30.7 116 1067-1186 232-347 (434)
33 PRK01297 ATP-dependent RNA hel 99.8 1.2E-17 2.5E-22 212.9 31.9 121 1067-1193 322-442 (475)
34 PLN00206 DEAD-box ATP-dependen 99.8 7.4E-18 1.6E-22 216.6 29.4 122 1068-1193 353-475 (518)
35 PRK04537 ATP-dependent RNA hel 99.8 2.2E-17 4.8E-22 214.0 31.4 120 1067-1192 244-363 (572)
36 PRK04837 ATP-dependent RNA hel 99.8 1.3E-17 2.7E-22 209.7 28.3 121 1066-1192 241-361 (423)
37 PRK10590 ATP-dependent RNA hel 99.8 2.7E-17 5.8E-22 208.6 28.9 115 1082-1202 245-359 (456)
38 PTZ00424 helicase 45; Provisio 99.8 3.1E-17 6.6E-22 204.2 28.3 109 1082-1194 267-375 (401)
39 TIGR01389 recQ ATP-dependent D 99.8 3E-17 6.5E-22 214.4 29.2 102 1082-1185 224-325 (591)
40 PRK11634 ATP-dependent RNA hel 99.8 7.3E-17 1.6E-21 210.6 32.2 119 1067-1191 232-350 (629)
41 PRK11057 ATP-dependent DNA hel 99.8 5.5E-17 1.2E-21 212.0 29.2 102 1081-1184 235-336 (607)
42 TIGR00643 recG ATP-dependent D 99.7 4.4E-16 9.5E-21 204.4 33.3 159 521-687 232-399 (630)
43 PRK11448 hsdR type I restricti 99.7 3E-16 6.4E-21 213.9 32.3 106 1082-1190 698-815 (1123)
44 PRK10917 ATP-dependent DNA hel 99.7 7.5E-16 1.6E-20 203.6 29.8 156 521-686 258-421 (681)
45 TIGR00580 mfd transcription-re 99.7 7.8E-16 1.7E-20 206.6 28.2 109 1081-1193 659-770 (926)
46 PLN03137 ATP-dependent DNA hel 99.7 7.3E-16 1.6E-20 204.1 26.3 105 1082-1188 680-784 (1195)
47 PRK13767 ATP-dependent helicas 99.7 4.2E-15 9.1E-20 201.1 32.6 112 1075-1188 277-395 (876)
48 PRK10689 transcription-repair 99.7 2.1E-15 4.6E-20 206.3 28.6 106 1082-1191 809-917 (1147)
49 TIGR03817 DECH_helic helicase/ 99.7 1.2E-14 2.6E-19 193.2 32.7 117 1081-1201 270-394 (742)
50 KOG0331 ATP-dependent RNA heli 99.7 4.4E-15 9.6E-20 185.1 22.8 120 1065-1186 323-443 (519)
51 PRK02362 ski2-like helicase; P 99.6 2.9E-14 6.3E-19 190.7 30.1 150 524-685 23-182 (737)
52 PRK01172 ski2-like helicase; P 99.6 6.6E-14 1.4E-18 185.8 30.5 149 523-684 21-179 (674)
53 smart00573 HSA domain in helic 99.6 2E-15 4.4E-20 144.9 9.8 71 24-94 2-73 (73)
54 cd00079 HELICc Helicase superf 99.6 3.6E-15 7.8E-20 155.4 12.1 120 1066-1187 12-131 (131)
55 PF04851 ResIII: Type III rest 99.6 5.5E-15 1.2E-19 162.7 14.0 154 523-685 2-183 (184)
56 COG0513 SrmB Superfamily II DN 99.6 1.6E-13 3.4E-18 176.3 29.4 133 1066-1205 259-391 (513)
57 TIGR01587 cas3_core CRISPR-ass 99.6 1.7E-13 3.7E-18 168.6 27.2 132 1067-1204 208-352 (358)
58 PRK00254 ski2-like helicase; P 99.6 3.3E-13 7.2E-18 180.3 30.8 150 523-684 22-179 (720)
59 KOG0330 ATP-dependent RNA heli 99.6 8.2E-14 1.8E-18 164.4 21.8 124 1067-1196 287-410 (476)
60 TIGR02621 cas3_GSU0051 CRISPR- 99.6 5.4E-13 1.2E-17 175.4 30.2 105 1080-1189 270-390 (844)
61 TIGR03714 secA2 accessory Sec 99.6 2.1E-13 4.5E-18 177.7 24.8 129 1064-1202 406-543 (762)
62 PF07529 HSA: HSA; InterPro: 99.5 3.4E-14 7.3E-19 136.4 8.9 72 23-94 1-73 (73)
63 TIGR00348 hsdR type I site-spe 99.5 4.6E-12 9.9E-17 167.5 30.9 158 521-687 235-405 (667)
64 PRK09200 preprotein translocas 99.5 7.2E-12 1.6E-16 165.0 28.3 131 1064-1203 410-548 (790)
65 smart00487 DEXDc DEAD-like hel 99.4 1.3E-12 2.7E-17 143.9 15.0 158 523-687 7-173 (201)
66 KOG0350 DEAD-box ATP-dependent 99.4 8.9E-12 1.9E-16 150.9 22.8 129 1071-1207 420-552 (620)
67 PHA02653 RNA helicase NPH-II; 99.4 4.7E-11 1E-15 156.5 31.0 126 1081-1215 394-533 (675)
68 PRK09401 reverse gyrase; Revie 99.4 8.2E-12 1.8E-16 171.9 24.1 102 1067-1177 316-430 (1176)
69 TIGR00963 secA preprotein tran 99.4 2.3E-11 5.1E-16 158.0 26.2 130 1065-1203 388-524 (745)
70 PF00271 Helicase_C: Helicase 99.4 3.9E-13 8.4E-18 129.6 7.5 78 1100-1179 1-78 (78)
71 PRK09751 putative ATP-dependen 99.4 2.1E-11 4.6E-16 168.6 27.0 96 1081-1178 243-371 (1490)
72 PRK12898 secA preprotein trans 99.4 2.4E-10 5.1E-15 148.2 34.0 132 1064-1204 455-594 (656)
73 cd00046 DEXDc DEAD-like helica 99.4 2.5E-12 5.5E-17 133.3 12.5 136 545-684 2-144 (144)
74 KOG4284 DEAD box protein [Tran 99.3 2.7E-11 5.8E-16 149.3 19.2 122 1067-1193 259-380 (980)
75 TIGR03158 cas3_cyano CRISPR-as 99.3 2.4E-10 5.1E-15 141.4 27.1 85 1081-1176 271-357 (357)
76 COG0514 RecQ Superfamily II DN 99.3 1.1E-10 2.4E-15 148.6 24.3 108 1082-1193 230-337 (590)
77 COG1201 Lhr Lhr-like helicases 99.3 3.4E-10 7.4E-15 148.8 29.4 124 1075-1204 246-371 (814)
78 KOG0328 Predicted ATP-dependen 99.3 5.9E-11 1.3E-15 135.4 18.1 108 1084-1195 268-375 (400)
79 PRK05580 primosome assembly pr 99.3 2.3E-10 5.1E-15 151.6 26.4 153 522-685 142-305 (679)
80 TIGR01054 rgy reverse gyrase. 99.3 1.1E-10 2.3E-15 161.4 22.7 130 523-660 77-213 (1171)
81 smart00490 HELICc helicase sup 99.3 1.1E-11 2.5E-16 118.6 8.9 81 1097-1179 2-82 (82)
82 KOG0338 ATP-dependent RNA heli 99.3 8.5E-10 1.8E-14 134.1 26.0 121 1072-1200 418-538 (691)
83 KOG0343 RNA Helicase [RNA proc 99.3 3.4E-10 7.3E-15 138.4 22.7 134 1067-1207 300-435 (758)
84 KOG0335 ATP-dependent RNA heli 99.3 2.9E-10 6.2E-15 140.7 22.1 149 1066-1226 314-469 (482)
85 COG1200 RecG RecG-like helicas 99.2 8E-10 1.7E-14 140.6 26.2 161 521-690 259-427 (677)
86 PRK13104 secA preprotein trans 99.2 2.2E-09 4.8E-14 141.7 30.3 132 1064-1204 426-595 (896)
87 KOG0345 ATP-dependent RNA heli 99.2 1.3E-09 2.9E-14 131.9 25.0 119 1066-1188 241-361 (567)
88 KOG0348 ATP-dependent RNA heli 99.2 3.9E-10 8.5E-15 137.6 19.8 117 1070-1188 411-551 (708)
89 PRK09694 helicase Cas3; Provis 99.2 2.1E-09 4.6E-14 144.2 28.7 99 1080-1181 558-665 (878)
90 COG4096 HsdR Type I site-speci 99.2 2.8E-10 6.1E-15 146.0 17.6 156 517-686 158-322 (875)
91 PRK14701 reverse gyrase; Provi 99.2 1.4E-09 3.1E-14 153.1 25.1 129 524-659 79-213 (1638)
92 TIGR01970 DEAH_box_HrpB ATP-de 99.2 1.3E-09 2.7E-14 146.3 23.1 108 1082-1194 209-337 (819)
93 COG1204 Superfamily II helicas 99.2 1.3E-09 2.7E-14 145.0 22.3 149 524-683 31-189 (766)
94 COG1205 Distinct helicase fami 99.1 7.8E-09 1.7E-13 139.3 29.3 133 1066-1202 290-431 (851)
95 cd00268 DEADc DEAD-box helicas 99.1 4.7E-10 1E-14 127.0 14.9 155 524-685 21-185 (203)
96 PRK12906 secA preprotein trans 99.1 1.2E-08 2.7E-13 134.2 29.8 131 1065-1204 423-561 (796)
97 KOG0339 ATP-dependent RNA heli 99.1 5.2E-09 1.1E-13 127.1 22.8 156 1065-1225 452-614 (731)
98 PRK13107 preprotein translocas 99.1 2.1E-08 4.5E-13 132.3 29.7 131 1064-1203 431-598 (908)
99 KOG0342 ATP-dependent RNA heli 99.1 1.1E-09 2.3E-14 133.7 16.3 128 1067-1201 316-443 (543)
100 TIGR00595 priA primosomal prot 99.1 9.9E-09 2.1E-13 132.1 25.9 128 548-685 2-140 (505)
101 PF00270 DEAD: DEAD/DEAH box h 99.1 7.9E-10 1.7E-14 120.9 13.2 157 527-691 2-168 (169)
102 COG4889 Predicted helicase [Ge 99.1 3E-09 6.4E-14 134.6 18.5 166 515-685 152-351 (1518)
103 KOG0340 ATP-dependent RNA heli 99.1 9.5E-09 2E-13 121.2 21.0 116 1066-1183 237-353 (442)
104 PRK12904 preprotein translocas 99.0 1.1E-07 2.3E-12 126.1 30.7 132 1064-1204 412-581 (830)
105 PRK12900 secA preprotein trans 99.0 2.8E-07 6E-12 122.4 34.3 132 1064-1204 580-719 (1025)
106 KOG0347 RNA helicase [RNA proc 99.0 1.7E-09 3.6E-14 132.6 11.4 106 1084-1193 465-570 (731)
107 PRK11664 ATP-dependent RNA hel 99.0 1.9E-08 4E-13 135.4 21.2 112 1082-1195 212-341 (812)
108 COG1197 Mfd Transcription-repa 98.9 8.2E-08 1.8E-12 128.5 26.0 158 523-690 593-758 (1139)
109 KOG0344 ATP-dependent RNA heli 98.9 2.2E-08 4.7E-13 125.0 16.0 145 1065-1223 372-517 (593)
110 PRK12899 secA preprotein trans 98.8 4.1E-06 8.9E-11 111.4 33.7 131 1064-1203 550-688 (970)
111 PF11496 HDA2-3: Class II hist 98.8 9.1E-08 2E-12 115.2 17.0 141 1063-1204 93-256 (297)
112 COG1202 Superfamily II helicas 98.8 1.4E-07 2.9E-12 116.6 18.3 107 1084-1193 442-553 (830)
113 TIGR01967 DEAH_box_HrpA ATP-de 98.7 3.4E-07 7.3E-12 126.3 21.5 108 1082-1196 279-407 (1283)
114 KOG0333 U5 snRNP-like RNA heli 98.7 5.3E-08 1.1E-12 119.4 11.9 143 1064-1216 501-643 (673)
115 KOG0334 RNA helicase [RNA proc 98.7 4E-07 8.8E-12 120.1 20.5 123 1065-1192 597-719 (997)
116 PRK11131 ATP-dependent RNA hel 98.7 5.3E-07 1.2E-11 124.1 21.9 107 1082-1195 286-413 (1294)
117 KOG0391 SNF2 family DNA-depend 98.7 7.7E-10 1.7E-14 142.4 -5.3 137 16-152 241-377 (1958)
118 PRK12326 preprotein translocas 98.7 3.1E-06 6.7E-11 110.2 26.4 132 1064-1204 409-555 (764)
119 KOG0952 DNA/RNA helicase MER3/ 98.6 3.7E-06 8.1E-11 110.3 25.4 158 539-711 122-307 (1230)
120 PF13872 AAA_34: P-loop contai 98.6 6.4E-07 1.4E-11 106.7 16.9 258 491-778 8-302 (303)
121 COG1203 CRISPR-associated heli 98.6 2.1E-06 4.6E-11 115.5 23.9 123 1080-1207 438-566 (733)
122 PRK13103 secA preprotein trans 98.6 6.6E-06 1.4E-10 109.4 26.3 132 1063-1203 430-598 (913)
123 COG4098 comFA Superfamily II D 98.6 4.9E-05 1.1E-09 90.5 29.7 147 521-685 94-244 (441)
124 COG0556 UvrB Helicase subunit 98.6 7E-05 1.5E-09 93.4 32.3 214 1065-1289 429-647 (663)
125 KOG0351 ATP-dependent DNA heli 98.6 1.7E-06 3.6E-11 116.8 20.3 105 1082-1188 485-589 (941)
126 TIGR00631 uvrb excinuclease AB 98.5 9.8E-07 2.1E-11 116.7 17.1 125 1065-1194 425-554 (655)
127 PRK05298 excinuclease ABC subu 98.5 1E-06 2.2E-11 117.0 16.8 124 1065-1193 429-557 (652)
128 KOG0332 ATP-dependent RNA heli 98.5 6.6E-07 1.4E-11 106.6 11.0 125 1066-1195 316-446 (477)
129 KOG0336 ATP-dependent RNA heli 98.4 8.7E-07 1.9E-11 105.9 10.6 120 1061-1183 445-564 (629)
130 PRK12903 secA preprotein trans 98.3 6.4E-05 1.4E-09 99.5 24.9 134 1063-1205 407-548 (925)
131 PLN03212 Transcription repress 98.3 1.1E-06 2.3E-11 101.1 7.5 74 1660-1762 25-99 (249)
132 KOG0048 Transcription factor, 98.3 7.6E-07 1.6E-11 104.6 5.7 82 1660-1770 9-91 (238)
133 KOG0341 DEAD-box protein abstr 98.2 7.1E-06 1.5E-10 97.8 11.9 130 1066-1202 408-537 (610)
134 KOG0326 ATP-dependent RNA heli 98.2 3E-06 6.4E-11 99.2 7.0 121 1065-1191 307-427 (459)
135 KOG0327 Translation initiation 98.1 6.9E-06 1.5E-10 99.1 9.9 128 1067-1204 252-379 (397)
136 KOG0951 RNA helicase BRR2, DEA 98.1 9.1E-05 2E-09 98.9 20.3 156 542-705 324-503 (1674)
137 PF00249 Myb_DNA-binding: Myb- 98.1 2.6E-06 5.5E-11 75.7 4.1 47 1660-1716 1-48 (48)
138 PRK12901 secA preprotein trans 98.1 0.00043 9.4E-09 93.0 25.6 129 1065-1202 611-747 (1112)
139 PRK15483 type III restriction- 98.1 4.7E-05 1E-09 102.6 16.4 140 544-686 60-240 (986)
140 PLN03091 hypothetical protein; 98.0 5.7E-06 1.2E-10 101.3 6.5 81 1660-1769 14-95 (459)
141 KOG0352 ATP-dependent DNA heli 98.0 0.00015 3.3E-09 87.9 17.6 102 1085-1188 258-359 (641)
142 KOG0353 ATP-dependent DNA heli 98.0 0.00036 7.9E-09 83.1 20.2 161 524-694 94-270 (695)
143 PF07652 Flavi_DEAD: Flaviviru 98.0 3.2E-05 6.9E-10 83.6 10.6 130 542-685 3-137 (148)
144 TIGR00596 rad1 DNA repair prot 98.0 0.00061 1.3E-08 92.1 25.0 73 626-699 9-89 (814)
145 smart00717 SANT SANT SWI3, AD 98.0 4.8E-06 1E-10 72.6 3.5 47 1660-1717 1-48 (49)
146 PF13921 Myb_DNA-bind_6: Myb-l 98.0 4.2E-06 9.2E-11 77.5 3.2 43 1663-1716 1-43 (60)
147 COG1199 DinG Rad3-related DNA 97.8 0.011 2.3E-07 79.7 31.5 102 1081-1186 478-612 (654)
148 smart00488 DEXDc2 DEAD-like he 97.7 0.00034 7.4E-09 84.8 14.5 72 525-596 9-84 (289)
149 smart00489 DEXDc3 DEAD-like he 97.7 0.00034 7.4E-09 84.8 14.5 72 525-596 9-84 (289)
150 CHL00122 secA preprotein trans 97.6 0.028 6.1E-07 75.8 31.0 84 1064-1150 406-490 (870)
151 COG0610 Type I site-specific r 97.5 0.00036 7.8E-09 96.5 12.3 140 543-689 273-418 (962)
152 PF13871 Helicase_C_4: Helicas 97.5 0.00019 4.1E-09 85.7 8.2 94 1123-1218 52-153 (278)
153 COG1110 Reverse gyrase [DNA re 97.5 0.00038 8.3E-09 92.3 11.4 128 523-658 81-215 (1187)
154 KOG0346 RNA helicase [RNA proc 97.5 0.0004 8.7E-09 85.0 9.9 123 1066-1193 253-410 (569)
155 cd00167 SANT 'SWI3, ADA2, N-Co 97.5 0.00011 2.4E-09 62.9 3.8 43 1662-1715 1-44 (45)
156 TIGR01407 dinG_rel DnaQ family 97.4 0.00091 2E-08 92.2 14.0 90 1069-1163 660-756 (850)
157 PLN03212 Transcription repress 97.4 0.00026 5.7E-09 81.9 6.2 60 1659-1729 77-136 (249)
158 KOG4329 DNA-binding protein [G 97.3 0.00046 1E-08 82.3 7.4 59 206-264 17-77 (445)
159 KOG0349 Putative DEAD-box RNA 97.2 0.00074 1.6E-08 82.0 8.5 94 1082-1177 505-601 (725)
160 PLN03091 hypothetical protein; 97.1 0.00057 1.2E-08 84.4 6.3 55 1659-1724 66-120 (459)
161 TIGR03117 cas_csf4 CRISPR-asso 97.1 0.0025 5.4E-08 84.3 12.7 78 529-607 2-85 (636)
162 PF13086 AAA_11: AAA domain; P 97.1 0.0056 1.2E-07 70.3 14.1 154 524-687 1-229 (236)
163 COG4581 Superfamily II RNA hel 97.1 0.003 6.6E-08 86.1 12.7 158 522-716 117-282 (1041)
164 TIGR00604 rad3 DNA repair heli 97.0 0.0027 5.8E-08 86.1 10.9 72 524-595 10-82 (705)
165 KOG0953 Mitochondrial RNA heli 96.9 0.0028 6.1E-08 79.8 9.6 109 1080-1192 356-476 (700)
166 KOG1513 Nuclear helicase MOP-3 96.9 0.0013 2.9E-08 84.5 6.6 251 500-778 245-536 (1300)
167 PRK10536 hypothetical protein; 96.9 0.0031 6.7E-08 74.8 9.0 146 523-689 58-217 (262)
168 PF02562 PhoH: PhoH-like prote 96.9 0.0025 5.3E-08 73.6 7.9 143 525-690 5-161 (205)
169 KOG0949 Predicted helicase, DE 96.9 0.11 2.5E-06 69.5 23.4 160 526-697 513-682 (1330)
170 PF13892 DBINO: DNA-binding do 96.8 0.016 3.5E-07 62.5 12.8 104 41-149 18-133 (139)
171 KOG0337 ATP-dependent RNA heli 96.7 0.0021 4.7E-08 78.6 5.7 124 1066-1194 246-369 (529)
172 PRK12902 secA preprotein trans 96.6 0.47 1E-05 64.6 27.1 83 1065-1150 422-505 (939)
173 COG3587 Restriction endonuclea 96.3 0.016 3.5E-07 76.5 10.3 134 542-683 73-241 (985)
174 PF07517 SecA_DEAD: SecA DEAD- 96.2 0.029 6.2E-07 67.5 11.3 153 522-693 75-266 (266)
175 PRK08074 bifunctional ATP-depe 95.8 0.056 1.2E-06 75.5 13.3 97 1068-1166 737-839 (928)
176 PRK07246 bifunctional ATP-depe 95.8 0.05 1.1E-06 74.9 12.3 89 1069-1162 634-724 (820)
177 PF13401 AAA_22: AAA domain; P 95.8 0.012 2.7E-07 61.9 5.1 115 543-684 4-125 (131)
178 KOG1802 RNA helicase nonsense 95.6 0.045 9.8E-07 70.5 9.9 81 523-611 409-490 (935)
179 KOG0947 Cytoplasmic exosomal R 95.1 0.064 1.4E-06 71.6 9.4 140 523-683 296-443 (1248)
180 COG0553 HepA Superfamily II DN 95.0 0.02 4.3E-07 79.0 4.7 181 522-706 82-289 (866)
181 KOG0948 Nuclear exosomal RNA h 94.9 0.12 2.6E-06 67.6 10.6 152 523-715 128-287 (1041)
182 PF13604 AAA_30: AAA domain; P 94.9 0.22 4.8E-06 57.3 12.1 126 524-686 1-132 (196)
183 PRK14873 primosome assembly pr 94.7 0.15 3.4E-06 68.5 11.5 125 552-685 169-304 (665)
184 cd00009 AAA The AAA+ (ATPases 94.6 0.35 7.7E-06 50.5 11.8 107 543-687 19-132 (151)
185 TIGR00376 DNA helicase, putati 94.5 0.19 4.1E-06 67.7 11.8 76 522-605 155-231 (637)
186 KOG0337 ATP-dependent RNA heli 94.4 0.093 2E-06 65.0 7.7 130 551-684 66-205 (529)
187 KOG1131 RNA polymerase II tran 94.4 0.33 7.1E-06 61.6 12.4 60 524-583 16-75 (755)
188 PF09848 DUF2075: Uncharacteri 94.3 0.12 2.5E-06 64.8 8.8 89 547-660 5-97 (352)
189 TIGR01448 recD_rel helicase, p 94.3 0.42 9.2E-06 65.3 14.5 136 521-687 320-455 (720)
190 KOG0051 RNA polymerase I termi 94.2 0.042 9.1E-07 71.2 4.5 72 1659-1759 383-454 (607)
191 COG1198 PriA Primosomal protei 94.2 0.44 9.6E-06 64.4 14.0 153 523-685 197-360 (730)
192 COG0653 SecA Preprotein transl 94.0 8 0.00017 53.1 24.8 111 1065-1179 412-533 (822)
193 PRK11747 dinG ATP-dependent DN 93.9 0.46 9.9E-06 64.8 13.7 91 1068-1163 520-616 (697)
194 KOG0336 ATP-dependent RNA heli 93.2 0.38 8.3E-06 59.3 9.8 146 543-691 257-414 (629)
195 TIGR01447 recD exodeoxyribonuc 93.1 0.52 1.1E-05 62.9 11.9 140 527-686 148-297 (586)
196 KOG0050 mRNA splicing protein 92.9 0.073 1.6E-06 66.8 3.3 49 1659-1718 6-55 (617)
197 KOG0329 ATP-dependent RNA heli 92.9 0.13 2.7E-06 60.1 4.9 124 526-658 66-197 (387)
198 PF13837 Myb_DNA-bind_4: Myb/S 92.9 0.071 1.5E-06 53.3 2.7 59 1661-1726 2-74 (90)
199 COG5147 REB1 Myb superfamily p 92.9 0.11 2.3E-06 67.0 4.9 73 1660-1762 20-93 (512)
200 PF13307 Helicase_C_2: Helicas 92.8 0.34 7.4E-06 54.4 8.2 79 1079-1163 6-92 (167)
201 KOG1803 DNA helicase [Replicat 92.8 0.45 9.7E-06 61.8 10.0 65 522-592 183-248 (649)
202 KOG0699 Serine/threonine prote 92.6 0.25 5.4E-06 59.8 7.1 25 240-264 133-157 (542)
203 PRK04296 thymidine kinase; Pro 92.5 0.55 1.2E-05 53.9 9.6 34 546-582 5-38 (190)
204 KOG0049 Transcription factor, 92.5 0.13 2.9E-06 65.7 4.8 50 1659-1719 359-409 (939)
205 KOG0341 DEAD-box protein abstr 92.0 0.038 8.2E-07 67.2 -0.6 131 551-684 215-367 (610)
206 KOG1805 DNA replication helica 92.0 0.63 1.4E-05 63.1 10.2 148 523-686 668-831 (1100)
207 PRK07003 DNA polymerase III su 91.8 0.73 1.6E-05 62.2 10.6 44 529-572 21-67 (830)
208 KOG0333 U5 snRNP-like RNA heli 91.7 0.31 6.7E-06 62.0 6.7 127 526-659 269-409 (673)
209 PHA02533 17 large terminase pr 91.7 0.67 1.4E-05 61.2 10.1 157 523-697 58-223 (534)
210 COG3421 Uncharacterized protei 91.5 0.22 4.7E-06 64.1 5.2 133 550-686 4-167 (812)
211 PRK10875 recD exonuclease V su 91.5 0.65 1.4E-05 62.2 9.8 143 525-687 153-304 (615)
212 KOG4150 Predicted ATP-dependen 91.4 1.1 2.4E-05 57.3 10.9 132 1065-1200 508-647 (1034)
213 KOG0926 DEAH-box RNA helicase 91.4 0.39 8.4E-06 63.5 7.3 134 539-685 267-425 (1172)
214 PRK14949 DNA polymerase III su 91.4 0.7 1.5E-05 63.4 10.0 44 529-572 21-67 (944)
215 KOG0950 DNA polymerase theta/e 91.1 1.2 2.6E-05 60.5 11.5 158 526-693 214-396 (1008)
216 KOG1132 Helicase of the DEAD s 91.1 1.2 2.7E-05 60.0 11.4 90 1082-1172 561-665 (945)
217 TIGR01407 dinG_rel DnaQ family 91.0 1.3 2.9E-05 61.9 12.6 85 521-608 242-332 (850)
218 KOG0346 RNA helicase [RNA proc 90.7 0.64 1.4E-05 58.2 7.9 139 543-684 56-211 (569)
219 PRK09112 DNA polymerase III su 90.6 1 2.3E-05 56.5 10.0 42 529-570 28-72 (351)
220 PRK14956 DNA polymerase III su 90.4 0.99 2.2E-05 58.6 9.7 45 528-572 22-69 (484)
221 smart00382 AAA ATPases associa 90.3 0.66 1.4E-05 47.8 6.8 45 544-591 3-47 (148)
222 COG1875 NYN ribonuclease and A 89.8 0.86 1.9E-05 56.5 7.8 60 525-586 229-288 (436)
223 COG1643 HrpA HrpA-like helicas 89.4 1.8 3.8E-05 59.7 11.2 134 536-685 58-206 (845)
224 PF06862 DUF1253: Protein of u 89.3 5.6 0.00012 51.4 14.9 144 1063-1207 278-431 (442)
225 PRK08074 bifunctional ATP-depe 89.1 2.3 5E-05 60.0 12.5 85 522-608 255-345 (928)
226 PF02399 Herpes_ori_bp: Origin 89.0 1.9 4.2E-05 58.4 10.9 110 1069-1188 270-385 (824)
227 PRK07764 DNA polymerase III su 88.9 1.6 3.4E-05 60.5 10.3 44 529-572 20-66 (824)
228 PRK14960 DNA polymerase III su 88.6 1.9 4.1E-05 57.8 10.4 42 530-571 21-65 (702)
229 TIGR02881 spore_V_K stage V sp 88.5 2.3 5E-05 51.1 10.4 24 545-568 44-67 (261)
230 PHA03333 putative ATPase subun 88.5 3.9 8.4E-05 54.9 12.9 148 527-685 172-332 (752)
231 PRK11747 dinG ATP-dependent DN 88.5 3 6.4E-05 57.2 12.6 44 523-566 24-72 (697)
232 KOG0920 ATP-dependent RNA heli 88.4 1.6 3.5E-05 60.2 9.8 144 525-684 174-329 (924)
233 PRK07994 DNA polymerase III su 88.3 3.4 7.4E-05 55.7 12.6 43 529-571 21-66 (647)
234 TIGR00631 uvrb excinuclease AB 87.8 1.7 3.7E-05 58.9 9.5 76 524-605 9-86 (655)
235 PRK12723 flagellar biosynthesi 87.8 6.2 0.00013 50.4 13.9 131 545-701 176-314 (388)
236 PLN03025 replication factor C 87.7 5 0.00011 49.7 12.9 41 529-569 18-60 (319)
237 PRK08691 DNA polymerase III su 87.3 4.1 8.9E-05 55.1 12.4 43 529-571 21-66 (709)
238 PRK12323 DNA polymerase III su 87.2 4.7 0.0001 54.2 12.6 25 546-570 41-65 (700)
239 PRK07246 bifunctional ATP-depe 87.1 4.7 0.0001 56.2 13.3 81 522-607 243-328 (820)
240 KOG0049 Transcription factor, 86.9 0.68 1.5E-05 59.7 4.6 48 1660-1717 253-301 (939)
241 TIGR00604 rad3 DNA repair heli 86.8 3.6 7.8E-05 56.5 11.9 97 1068-1165 507-618 (705)
242 KOG0951 RNA helicase BRR2, DEA 86.8 1.7 3.7E-05 60.4 8.4 111 538-662 1154-1269(1674)
243 TIGR02928 orc1/cdc6 family rep 86.6 5.3 0.00012 50.0 12.5 51 517-569 13-66 (365)
244 TIGR03420 DnaA_homol_Hda DnaA 86.3 3.8 8.3E-05 47.6 10.3 44 542-589 37-80 (226)
245 PRK14958 DNA polymerase III su 85.9 5.8 0.00013 52.4 12.6 44 529-572 21-67 (509)
246 COG1484 DnaC DNA replication p 85.4 5.6 0.00012 48.0 11.3 66 525-593 87-152 (254)
247 TIGR03015 pepcterm_ATPase puta 85.2 3.6 7.7E-05 49.2 9.5 43 525-567 24-67 (269)
248 PF05876 Terminase_GpA: Phage 85.1 1.7 3.6E-05 57.9 7.3 171 516-696 8-191 (557)
249 KOG0922 DEAH-box RNA helicase 84.8 2.7 5.8E-05 55.6 8.6 134 535-684 58-205 (674)
250 PRK12402 replication factor C 84.6 2.6 5.6E-05 52.0 8.2 40 530-569 21-62 (337)
251 PRK08181 transposase; Validate 84.1 7.4 0.00016 47.4 11.5 45 525-569 88-132 (269)
252 PRK05298 excinuclease ABC subu 84.0 3.3 7.2E-05 56.3 9.5 78 522-605 10-89 (652)
253 PF02399 Herpes_ori_bp: Origin 84.0 2.6 5.6E-05 57.3 8.2 126 547-684 53-190 (824)
254 KOG0326 ATP-dependent RNA heli 83.9 2 4.4E-05 52.1 6.4 128 551-683 130-267 (459)
255 PRK14952 DNA polymerase III su 83.8 7.2 0.00016 52.3 12.1 45 528-572 17-64 (584)
256 PF05621 TniB: Bacterial TniB 83.7 6.1 0.00013 48.6 10.5 133 526-684 39-189 (302)
257 PRK14961 DNA polymerase III su 83.4 7.8 0.00017 49.0 11.8 43 528-570 20-65 (363)
258 PRK08451 DNA polymerase III su 83.3 4.3 9.4E-05 53.7 9.7 44 529-572 19-65 (535)
259 PRK14962 DNA polymerase III su 83.0 4.2 9.1E-05 53.2 9.4 25 546-570 39-63 (472)
260 PRK06526 transposase; Provisio 83.0 2.2 4.8E-05 51.4 6.5 55 530-595 89-143 (254)
261 KOG0329 ATP-dependent RNA heli 82.6 0.86 1.9E-05 53.5 2.6 44 1138-1181 302-345 (387)
262 PRK07471 DNA polymerase III su 82.3 3.5 7.5E-05 52.3 8.1 61 529-589 24-94 (365)
263 KOG0327 Translation initiation 82.3 1.8 3.9E-05 53.9 5.3 140 543-684 63-210 (397)
264 PRK14957 DNA polymerase III su 82.2 8.7 0.00019 51.2 11.9 44 529-572 21-67 (546)
265 PF13177 DNA_pol3_delta2: DNA 82.2 17 0.00038 40.7 12.8 45 529-573 2-49 (162)
266 PRK06645 DNA polymerase III su 82.2 6.7 0.00015 51.8 10.8 43 529-571 26-71 (507)
267 PRK05707 DNA polymerase III su 82.1 5.1 0.00011 50.1 9.3 48 524-571 3-50 (328)
268 PRK08769 DNA polymerase III su 81.8 10 0.00022 47.4 11.6 49 523-571 3-54 (319)
269 PF06733 DEAD_2: DEAD_2; Inte 81.7 1.2 2.6E-05 50.2 3.4 37 624-660 119-159 (174)
270 smart00492 HELICc3 helicase su 81.7 6.6 0.00014 43.3 9.0 47 1116-1163 31-79 (141)
271 PRK06871 DNA polymerase III su 81.0 10 0.00022 47.4 11.4 47 525-571 3-52 (325)
272 PRK14964 DNA polymerase III su 81.0 11 0.00024 49.5 12.1 44 529-572 18-64 (491)
273 PRK07940 DNA polymerase III su 80.9 8.5 0.00018 49.3 10.8 26 546-571 39-64 (394)
274 PRK14951 DNA polymerase III su 80.7 7.2 0.00016 52.6 10.5 42 529-570 21-65 (618)
275 TIGR02880 cbbX_cfxQ probable R 80.6 4.2 9.2E-05 49.7 7.8 26 544-569 59-84 (284)
276 smart00491 HELICc2 helicase su 80.1 8 0.00017 42.6 9.0 53 1110-1163 23-80 (142)
277 PRK14974 cell division protein 80.1 13 0.00027 46.9 11.7 114 546-686 143-266 (336)
278 PTZ00112 origin recognition co 79.7 15 0.00032 51.0 12.5 51 517-569 753-807 (1164)
279 KOG4329 DNA-binding protein [G 79.6 2.1 4.6E-05 52.4 4.6 45 368-414 32-76 (445)
280 PRK14950 DNA polymerase III su 79.5 11 0.00024 50.7 11.8 44 528-571 20-66 (585)
281 COG5147 REB1 Myb superfamily p 79.2 0.58 1.3E-05 60.6 -0.2 48 1660-1719 291-338 (512)
282 PRK05703 flhF flagellar biosyn 79.1 11 0.00024 48.8 11.2 56 646-701 299-359 (424)
283 PRK08084 DNA replication initi 79.0 8.5 0.00018 45.7 9.5 37 532-568 32-70 (235)
284 KOG0051 RNA polymerase I termi 78.6 2.2 4.8E-05 56.1 4.6 105 1659-1777 435-570 (607)
285 PRK14948 DNA polymerase III su 78.1 14 0.00029 50.2 11.9 43 528-570 20-65 (620)
286 TIGR02562 cas3_yersinia CRISPR 77.9 15 0.00033 51.6 12.3 48 1133-1183 837-884 (1110)
287 KOG0050 mRNA splicing protein 77.8 2.3 4.9E-05 54.2 4.3 86 1660-1761 59-159 (617)
288 PRK14969 DNA polymerase III su 77.7 24 0.00051 47.1 13.8 44 529-572 21-67 (527)
289 CHL00181 cbbX CbbX; Provisiona 77.5 8 0.00017 47.5 8.8 24 545-568 61-84 (287)
290 PRK14963 DNA polymerase III su 77.4 10 0.00023 50.1 10.4 43 529-571 19-64 (504)
291 PRK07993 DNA polymerase III su 77.4 11 0.00023 47.4 10.0 48 524-571 2-52 (334)
292 PF12340 DUF3638: Protein of u 77.1 3.2 6.9E-05 49.2 5.0 73 522-597 21-93 (229)
293 PRK06835 DNA replication prote 77.1 17 0.00038 45.5 11.7 46 524-569 160-209 (329)
294 smart00573 HSA domain in helic 76.5 14 0.0003 36.3 8.4 46 81-127 26-71 (73)
295 KOG0991 Replication factor C, 76.3 4.9 0.00011 47.3 6.0 86 544-670 49-134 (333)
296 KOG0925 mRNA splicing factor A 75.9 3.5 7.5E-05 52.6 5.1 107 1081-1232 312-421 (699)
297 PRK00440 rfc replication facto 75.9 26 0.00056 42.9 12.7 38 531-568 24-63 (319)
298 PRK06647 DNA polymerase III su 75.5 15 0.00032 49.4 11.1 26 546-571 41-66 (563)
299 PHA02544 44 clamp loader, smal 75.4 17 0.00037 44.7 11.0 40 646-685 100-141 (316)
300 PRK08058 DNA polymerase III su 75.3 17 0.00036 45.6 10.9 132 527-683 9-148 (329)
301 PRK09111 DNA polymerase III su 75.3 18 0.00039 48.9 11.9 43 529-571 29-74 (598)
302 PRK00411 cdc6 cell division co 75.2 34 0.00073 43.5 13.9 45 526-570 35-82 (394)
303 PRK14955 DNA polymerase III su 75.0 35 0.00076 43.9 14.0 42 529-570 21-65 (397)
304 KOG1279 Chromatin remodeling f 75.0 2.4 5.2E-05 55.3 3.6 46 1659-1715 252-297 (506)
305 TIGR02768 TraA_Ti Ti-type conj 74.8 16 0.00034 50.7 11.5 127 522-686 350-478 (744)
306 PF07529 HSA: HSA; InterPro: 74.8 15 0.00033 35.5 8.3 45 82-127 27-71 (73)
307 PRK05563 DNA polymerase III su 74.5 19 0.0004 48.4 11.7 27 546-572 41-67 (559)
308 PF13245 AAA_19: Part of AAA d 74.3 7.1 0.00015 38.5 5.9 43 546-588 13-56 (76)
309 cd01121 Sms Sms (bacterial rad 74.3 22 0.00047 45.4 11.7 102 531-659 69-171 (372)
310 PRK08116 hypothetical protein; 73.5 18 0.00039 44.1 10.3 36 543-581 114-149 (268)
311 cd01120 RecA-like_NTPases RecA 73.4 23 0.00051 38.0 10.3 34 547-583 3-36 (165)
312 PRK08727 hypothetical protein; 73.3 32 0.00068 40.9 12.1 23 546-568 44-66 (233)
313 PF13173 AAA_14: AAA domain 72.7 19 0.00041 38.5 9.2 39 646-685 61-99 (128)
314 PRK14959 DNA polymerase III su 72.6 17 0.00037 49.1 10.6 39 533-571 25-66 (624)
315 PF00448 SRP54: SRP54-type pro 72.1 19 0.00042 41.8 9.7 134 547-701 5-142 (196)
316 KOG0989 Replication factor C, 72.1 5.3 0.00012 48.9 5.2 43 527-569 39-83 (346)
317 PHA03368 DNA packaging termina 71.3 13 0.00029 49.9 8.9 122 547-683 258-389 (738)
318 PRK06921 hypothetical protein; 71.2 20 0.00043 43.6 10.0 27 543-569 117-143 (266)
319 PRK14953 DNA polymerase III su 70.9 23 0.0005 46.8 11.1 42 529-570 21-65 (486)
320 PRK08903 DnaA regulatory inact 70.9 35 0.00077 40.0 11.7 26 543-568 42-67 (227)
321 PRK06090 DNA polymerase III su 70.6 31 0.00068 43.1 11.6 48 524-571 3-53 (319)
322 KOG0332 ATP-dependent RNA heli 70.5 7.3 0.00016 48.6 5.9 130 543-683 129-273 (477)
323 PRK14965 DNA polymerase III su 70.1 21 0.00044 48.2 10.6 44 529-572 21-67 (576)
324 PRK10917 ATP-dependent DNA hel 70.1 24 0.00053 48.4 11.5 102 1056-1158 282-389 (681)
325 TIGR03345 VI_ClpV1 type VI sec 70.0 19 0.00042 50.6 10.7 35 533-567 196-232 (852)
326 PRK06893 DNA replication initi 69.6 27 0.00059 41.3 10.5 24 546-569 42-65 (229)
327 KOG0950 DNA polymerase theta/e 69.5 11 0.00024 51.8 7.8 74 1109-1185 525-604 (1008)
328 PRK05642 DNA replication initi 69.4 24 0.00051 42.0 9.9 37 647-683 98-138 (234)
329 PRK13889 conjugal transfer rel 69.0 21 0.00046 50.6 10.7 129 523-688 345-474 (988)
330 PRK11889 flhF flagellar biosyn 68.4 55 0.0012 42.2 13.1 125 547-701 245-379 (436)
331 COG0552 FtsY Signal recognitio 68.3 17 0.00037 45.3 8.5 123 548-691 144-276 (340)
332 PRK00149 dnaA chromosomal repl 67.7 26 0.00057 45.6 10.7 24 546-569 151-174 (450)
333 PF03354 Terminase_1: Phage Te 67.4 31 0.00067 45.4 11.3 147 527-684 1-162 (477)
334 cd01124 KaiC KaiC is a circadi 67.2 20 0.00043 40.3 8.3 48 546-596 2-49 (187)
335 KOG0922 DEAH-box RNA helicase 67.1 15 0.00032 49.1 8.0 108 1083-1195 259-392 (674)
336 PF01443 Viral_helicase1: Vira 66.5 9.6 0.00021 44.4 5.8 41 645-688 61-101 (234)
337 PRK14954 DNA polymerase III su 66.3 30 0.00066 46.9 11.0 44 528-571 20-66 (620)
338 PRK14087 dnaA chromosomal repl 66.2 22 0.00048 46.5 9.5 24 546-569 144-167 (450)
339 PRK11823 DNA repair protein Ra 66.1 37 0.0008 44.4 11.5 102 531-659 67-169 (446)
340 COG2812 DnaX DNA polymerase II 65.7 12 0.00027 49.2 7.0 125 529-683 21-156 (515)
341 PHA03372 DNA packaging termina 65.4 20 0.00044 47.8 8.7 132 539-683 199-336 (668)
342 TIGR02688 conserved hypothetic 64.8 20 0.00042 46.4 8.3 46 527-572 193-238 (449)
343 COG1643 HrpA HrpA-like helicas 64.0 25 0.00055 49.0 9.7 110 1082-1196 259-390 (845)
344 KOG0924 mRNA splicing factor A 63.9 21 0.00046 47.6 8.3 107 1082-1233 623-732 (1042)
345 PRK11054 helD DNA helicase IV; 63.6 16 0.00034 50.2 7.7 69 523-597 195-265 (684)
346 cd01122 GP4d_helicase GP4d_hel 63.3 18 0.00039 43.5 7.5 52 540-593 27-78 (271)
347 COG5271 MDN1 AAA ATPase contai 63.1 53 0.0012 48.2 12.0 371 56-492 3710-4083(4600)
348 COG0464 SpoVK ATPases of the A 63.0 24 0.00052 46.5 9.1 65 525-595 250-322 (494)
349 PF00004 AAA: ATPase family as 62.5 5.9 0.00013 41.4 2.8 21 547-567 2-22 (132)
350 PRK13342 recombination factor 62.4 32 0.0007 44.4 9.9 21 545-565 38-58 (413)
351 PRK05896 DNA polymerase III su 62.2 39 0.00084 45.6 10.7 43 529-571 21-66 (605)
352 COG3267 ExeA Type II secretory 61.9 37 0.00081 41.0 9.3 113 545-687 53-176 (269)
353 TIGR00365 monothiol glutaredox 61.6 38 0.00083 34.9 8.4 65 1081-1145 10-80 (97)
354 PRK12422 chromosomal replicati 61.4 24 0.00051 46.2 8.5 24 546-569 144-167 (445)
355 TIGR03117 cas_csf4 CRISPR-asso 61.4 49 0.0011 45.1 11.5 92 1080-1178 469-573 (636)
356 TIGR00708 cobA cob(I)alamin ad 61.4 10 0.00022 43.3 4.5 58 639-696 90-151 (173)
357 PRK05986 cob(I)alamin adenolsy 61.0 47 0.001 38.7 9.8 143 543-697 22-170 (191)
358 TIGR00643 recG ATP-dependent D 61.0 38 0.00083 46.2 10.7 102 1056-1158 256-363 (630)
359 TIGR00678 holB DNA polymerase 60.9 32 0.0007 39.1 8.6 25 546-570 17-41 (188)
360 TIGR00362 DnaA chromosomal rep 60.7 33 0.00072 44.0 9.6 24 546-569 139-162 (405)
361 COG0470 HolB ATPase involved i 60.3 34 0.00073 41.9 9.2 27 546-572 27-53 (325)
362 KOG0952 DNA/RNA helicase MER3/ 60.3 8 0.00017 53.5 4.0 112 540-660 940-1060(1230)
363 KOG1513 Nuclear helicase MOP-3 60.2 14 0.00029 49.8 5.8 83 1125-1210 850-940 (1300)
364 PF00580 UvrD-helicase: UvrD/R 60.0 16 0.00035 44.1 6.3 56 525-586 1-57 (315)
365 TIGR01557 myb_SHAQKYF myb-like 59.9 16 0.00034 34.4 4.7 47 1660-1715 3-53 (57)
366 PTZ00293 thymidine kinase; Pro 59.5 20 0.00043 42.3 6.6 35 547-584 8-42 (211)
367 PRK07133 DNA polymerase III su 59.4 42 0.00092 46.2 10.5 25 546-570 43-67 (725)
368 PRK05580 primosome assembly pr 59.2 55 0.0012 45.1 11.7 95 1063-1160 171-266 (679)
369 TIGR02397 dnaX_nterm DNA polym 58.9 47 0.001 41.4 10.3 25 546-570 39-63 (355)
370 KOG2543 Origin recognition com 58.6 81 0.0018 40.2 11.7 225 523-777 8-253 (438)
371 cd01128 rho_factor Transcripti 58.6 13 0.00029 44.7 5.2 30 532-562 6-35 (249)
372 PRK00771 signal recognition pa 58.2 50 0.0011 43.1 10.5 34 545-581 97-130 (437)
373 PRK09183 transposase/IS protei 58.0 42 0.00091 40.7 9.3 36 542-580 101-136 (259)
374 TIGR00595 priA primosomal prot 57.8 60 0.0013 43.2 11.4 95 1063-1160 6-101 (505)
375 PRK08760 replicative DNA helic 57.7 46 0.001 43.9 10.2 63 532-596 218-280 (476)
376 PF13397 DUF4109: Domain of un 57.7 6.9 0.00015 41.0 2.2 10 31-40 77-86 (105)
377 PRK14088 dnaA chromosomal repl 57.5 1E+02 0.0022 40.4 13.2 25 545-569 132-156 (440)
378 PRK14722 flhF flagellar biosyn 57.5 60 0.0013 41.6 10.8 123 543-693 137-266 (374)
379 PRK04195 replication factor C 56.8 51 0.0011 43.5 10.5 25 543-567 39-63 (482)
380 PF13873 Myb_DNA-bind_5: Myb/S 56.0 18 0.00039 35.5 4.7 54 1660-1719 2-72 (78)
381 KOG0457 Histone acetyltransfer 55.9 14 0.00029 47.1 4.7 46 1660-1716 72-118 (438)
382 TIGR02639 ClpA ATP-dependent C 55.3 50 0.0011 45.9 10.4 40 526-568 187-228 (731)
383 PRK08699 DNA polymerase III su 55.3 57 0.0012 40.9 10.1 48 525-572 2-50 (325)
384 KOG0924 mRNA splicing factor A 55.2 17 0.00037 48.4 5.5 50 1106-1158 597-647 (1042)
385 PF06745 KaiC: KaiC; InterPro 54.9 41 0.00088 39.4 8.3 52 543-596 19-70 (226)
386 COG1702 PhoH Phosphate starvat 54.2 9.1 0.0002 47.7 2.8 43 646-690 243-285 (348)
387 KOG0926 DEAH-box RNA helicase 53.9 8.7 0.00019 51.7 2.7 66 1125-1193 620-704 (1172)
388 PF06564 YhjQ: YhjQ protein; 53.6 17 0.00036 43.8 4.8 37 547-586 6-44 (243)
389 PRK06964 DNA polymerase III su 53.5 68 0.0015 40.6 10.3 47 525-571 2-49 (342)
390 PRK06305 DNA polymerase III su 53.2 84 0.0018 41.3 11.4 42 529-570 22-66 (451)
391 TIGR01242 26Sp45 26S proteasom 53.0 50 0.0011 41.8 9.2 25 543-567 156-180 (364)
392 KOG0298 DEAD box-containing he 52.9 6.1 0.00013 55.5 1.2 139 1064-1208 1201-1341(1394)
393 cd02037 MRP-like MRP (Multiple 52.8 1.1E+02 0.0023 34.4 10.8 52 645-700 66-117 (169)
394 PRK13826 Dtr system oriT relax 52.5 72 0.0015 46.1 11.3 129 523-688 380-509 (1102)
395 PRK06646 DNA polymerase III su 52.4 43 0.00093 37.7 7.4 81 1064-1163 11-95 (154)
396 PF13481 AAA_25: AAA domain; P 52.3 40 0.00087 38.1 7.5 55 543-597 32-93 (193)
397 COG5259 RSC8 RSC chromatin rem 52.2 10 0.00022 48.2 2.8 45 1660-1715 279-323 (531)
398 KOG0737 AAA+-type ATPase [Post 52.1 21 0.00047 44.9 5.5 50 540-595 124-173 (386)
399 PRK07399 DNA polymerase III su 52.1 1E+02 0.0023 38.5 11.6 43 529-571 9-54 (314)
400 PRK13849 putative crown gall t 51.3 65 0.0014 38.4 9.2 115 551-699 10-127 (231)
401 TIGR00416 sms DNA repair prote 50.6 89 0.0019 41.1 11.1 102 531-659 81-183 (454)
402 cd00984 DnaB_C DnaB helicase C 50.5 35 0.00075 40.2 6.9 48 533-582 3-50 (242)
403 cd03028 GRX_PICOT_like Glutare 50.5 57 0.0012 33.0 7.4 57 1082-1138 7-69 (90)
404 PRK14086 dnaA chromosomal repl 50.0 93 0.002 42.3 11.2 23 546-568 317-339 (617)
405 PRK13341 recombination factor 50.0 68 0.0015 44.5 10.3 21 545-565 54-74 (725)
406 COG0593 DnaA ATPase involved i 49.9 62 0.0013 41.8 9.2 41 646-686 175-221 (408)
407 PRK14712 conjugal transfer nic 49.9 40 0.00088 50.1 8.4 140 519-688 830-971 (1623)
408 PHA02244 ATPase-like protein 49.6 1E+02 0.0022 39.5 10.9 26 541-566 117-142 (383)
409 cd00561 CobA_CobO_BtuR ATP:cor 49.6 53 0.0011 37.2 7.6 136 547-694 6-147 (159)
410 PRK10865 protein disaggregatio 49.5 53 0.0011 46.5 9.3 35 533-567 187-223 (857)
411 KOG0780 Signal recognition par 49.4 51 0.0011 41.9 8.0 96 548-664 106-201 (483)
412 COG1110 Reverse gyrase [DNA re 49.2 59 0.0013 45.7 9.2 87 1067-1162 323-416 (1187)
413 PF07015 VirC1: VirC1 protein; 48.6 1.4E+02 0.003 36.0 11.1 39 552-593 11-51 (231)
414 TIGR01547 phage_term_2 phage t 48.4 54 0.0012 42.0 8.5 131 547-686 5-142 (396)
415 COG1419 FlhF Flagellar GTP-bin 48.4 1.9E+02 0.0042 37.4 13.0 135 543-702 203-341 (407)
416 PF03237 Terminase_6: Terminas 48.3 68 0.0015 39.5 9.3 130 550-688 4-141 (384)
417 TIGR03346 chaperone_ClpB ATP-d 47.8 49 0.0011 46.8 8.7 35 533-567 182-218 (852)
418 cd03115 SRP The signal recogni 47.6 3E+02 0.0065 30.7 13.4 23 547-569 4-26 (173)
419 TIGR03877 thermo_KaiC_1 KaiC d 47.1 89 0.0019 37.2 9.6 51 531-584 8-59 (237)
420 PRK04132 replication factor C 46.7 71 0.0015 44.9 9.7 49 646-694 630-679 (846)
421 PRK12727 flagellar biosynthesi 46.4 3.1E+02 0.0067 37.0 14.8 35 546-581 353-387 (559)
422 CHL00095 clpC Clp protease ATP 46.3 66 0.0014 45.4 9.5 42 526-568 184-225 (821)
423 PRK00080 ruvB Holliday junctio 46.3 1.7E+02 0.0036 36.6 12.2 43 525-567 29-75 (328)
424 TIGR00665 DnaB replicative DNA 46.1 1.1E+02 0.0024 39.6 11.0 55 533-589 185-239 (434)
425 cd01125 repA Hexameric Replica 46.0 81 0.0018 37.5 9.0 37 545-581 3-48 (239)
426 PRK13709 conjugal transfer nic 45.9 83 0.0018 47.5 10.6 140 518-687 961-1102(1747)
427 PRK05748 replicative DNA helic 45.3 92 0.002 40.7 10.1 60 532-593 192-251 (448)
428 PRK12724 flagellar biosynthesi 45.0 2.3E+02 0.0051 37.0 13.2 127 546-702 226-362 (432)
429 COG0626 MetC Cystathionine bet 44.6 50 0.0011 42.5 7.2 110 1065-1202 85-195 (396)
430 KOG0048 Transcription factor, 44.4 29 0.00063 41.6 4.9 55 1659-1724 61-115 (238)
431 KOG1133 Helicase of the DEAD s 44.2 12 0.00025 50.1 1.7 73 590-672 299-374 (821)
432 PRK10824 glutaredoxin-4; Provi 44.2 85 0.0018 33.8 7.8 71 1074-1146 7-84 (115)
433 KOG0923 mRNA splicing factor A 43.7 51 0.0011 44.2 7.1 137 536-683 273-419 (902)
434 KOG4282 Transcription factor G 43.7 32 0.0007 43.3 5.4 62 1661-1729 55-126 (345)
435 PRK07004 replicative DNA helic 43.3 72 0.0016 42.0 8.7 59 533-593 203-261 (460)
436 PRK14721 flhF flagellar biosyn 43.1 1.4E+02 0.0031 38.8 11.1 52 646-698 269-325 (420)
437 COG1192 Soj ATPases involved i 42.8 36 0.00078 40.7 5.5 41 547-589 7-49 (259)
438 PRK09165 replicative DNA helic 42.7 1.3E+02 0.0028 40.1 10.9 62 532-593 206-279 (497)
439 PF01695 IstB_IS21: IstB-like 42.7 37 0.0008 38.8 5.3 48 541-595 45-92 (178)
440 TIGR00959 ffh signal recogniti 42.5 1.4E+02 0.003 39.1 10.8 34 546-581 102-135 (428)
441 PF00308 Bac_DnaA: Bacterial d 41.9 3.4E+02 0.0074 32.1 13.2 37 646-682 97-137 (219)
442 PRK07952 DNA replication prote 41.5 91 0.002 37.7 8.5 62 527-595 79-144 (244)
443 TIGR01074 rep ATP-dependent DN 41.4 41 0.00089 46.0 6.3 67 525-597 2-70 (664)
444 PRK05728 DNA polymerase III su 41.1 1.1E+02 0.0023 34.0 8.3 82 1064-1163 11-96 (142)
445 PRK04328 hypothetical protein; 40.7 1.1E+02 0.0024 36.8 9.1 47 532-581 11-58 (249)
446 CHL00176 ftsH cell division pr 40.5 77 0.0017 43.4 8.5 24 543-566 216-239 (638)
447 PHA02518 ParA-like protein; Pr 40.4 1.1E+02 0.0024 35.0 8.8 40 549-591 7-48 (211)
448 PF00265 TK: Thymidine kinase; 40.3 1.5E+02 0.0033 34.0 9.7 35 547-584 5-39 (176)
449 PRK14873 primosome assembly pr 40.2 1.2E+02 0.0026 41.8 10.3 79 1064-1144 170-250 (665)
450 PRK03992 proteasome-activating 40.1 37 0.0008 43.6 5.3 38 543-586 165-202 (389)
451 TIGR01243 CDC48 AAA family ATP 40.1 67 0.0015 44.7 8.1 23 543-565 212-234 (733)
452 PRK08840 replicative DNA helic 40.1 1.5E+02 0.0032 39.3 10.7 59 533-593 207-265 (464)
453 CHL00095 clpC Clp protease ATP 39.9 4.3E+02 0.0092 37.6 15.8 42 528-569 513-565 (821)
454 KOG0442 Structure-specific end 39.6 4.6E+02 0.01 36.8 14.9 266 523-805 12-310 (892)
455 TIGR03600 phage_DnaB phage rep 39.5 84 0.0018 40.7 8.4 58 532-591 183-240 (421)
456 PRK05564 DNA polymerase III su 39.1 1.8E+02 0.004 36.0 11.0 42 529-570 9-53 (313)
457 PRK10416 signal recognition pa 39.1 2.2E+02 0.0047 35.9 11.5 50 643-692 193-252 (318)
458 PRK08533 flagellar accessory p 38.7 2E+02 0.0044 34.3 10.7 39 543-584 24-62 (230)
459 COG2256 MGS1 ATPase related to 38.6 1.1E+02 0.0023 39.4 8.6 44 647-693 105-148 (436)
460 PRK10867 signal recognition pa 38.6 1.9E+02 0.004 38.0 11.1 34 546-581 103-136 (433)
461 PF09111 SLIDE: SLIDE; InterP 38.5 34 0.00074 36.9 3.8 58 1659-1719 48-113 (118)
462 PRK14971 DNA polymerase III su 38.4 1.8E+02 0.0038 39.9 11.3 42 529-570 22-66 (614)
463 COG1200 RecG RecG-like helicas 38.4 1.4E+02 0.0031 40.7 10.1 106 1050-1157 277-389 (677)
464 cd00268 DEADc DEAD-box helicas 38.4 4.5E+02 0.0097 29.9 13.3 128 1063-1199 45-188 (203)
465 PRK06067 flagellar accessory p 38.4 1.3E+02 0.0029 35.5 9.2 51 543-596 25-75 (234)
466 PRK07276 DNA polymerase III su 38.2 1.9E+02 0.0042 35.9 10.7 47 524-571 2-50 (290)
467 COG0630 VirB11 Type IV secreto 37.9 1.4E+02 0.0031 37.2 9.7 132 523-697 126-261 (312)
468 PF10440 WIYLD: Ubiquitin-bind 37.4 22 0.00047 34.5 1.9 19 1669-1687 30-48 (65)
469 TIGR02640 gas_vesic_GvpN gas v 37.2 62 0.0014 39.2 6.3 49 527-581 5-53 (262)
470 PRK06321 replicative DNA helic 36.4 1.4E+02 0.003 39.6 9.6 60 532-593 215-274 (472)
471 TIGR03689 pup_AAA proteasome A 36.2 64 0.0014 42.9 6.6 26 543-568 216-241 (512)
472 PRK08006 replicative DNA helic 36.1 1.8E+02 0.0038 38.6 10.5 60 532-593 213-272 (471)
473 PTZ00454 26S protease regulato 35.8 45 0.00097 43.1 5.0 38 543-586 179-216 (398)
474 TIGR03880 KaiC_arch_3 KaiC dom 35.7 2.5E+02 0.0055 32.8 10.9 49 545-596 18-66 (224)
475 COG4626 Phage terminase-like p 35.7 2.1E+02 0.0046 38.3 10.9 132 523-669 60-206 (546)
476 COG1474 CDC6 Cdc6-related prot 35.6 2.4E+02 0.0052 36.2 11.3 48 523-570 19-69 (366)
477 PRK06731 flhF flagellar biosyn 35.5 3.4E+02 0.0075 33.4 12.2 126 544-699 76-211 (270)
478 TIGR01243 CDC48 AAA family ATP 34.7 53 0.0011 45.7 5.8 41 543-589 487-527 (733)
479 PRK11034 clpA ATP-dependent Cl 34.4 92 0.002 43.5 7.9 26 542-567 206-231 (758)
480 CHL00206 ycf2 Ycf2; Provisiona 34.3 72 0.0016 48.0 6.9 42 542-589 1629-1670(2281)
481 PHA02542 41 41 helicase; Provi 34.1 84 0.0018 41.6 7.1 57 532-591 178-235 (473)
482 TIGR00580 mfd transcription-re 33.8 2E+02 0.0043 41.3 11.0 95 1063-1158 481-579 (926)
483 PRK14970 DNA polymerase III su 33.8 2.3E+02 0.0049 35.9 10.8 41 529-569 22-65 (367)
484 TIGR02760 TraI_TIGR conjugativ 33.7 2.2E+02 0.0048 44.1 12.2 150 522-697 427-579 (1960)
485 cd03418 GRX_GRXb_1_3_like Glut 33.6 1.6E+02 0.0035 28.0 7.3 57 1084-1140 1-58 (75)
486 cd00984 DnaB_C DnaB helicase C 33.4 1.2E+02 0.0025 35.9 7.7 65 1099-1163 116-209 (242)
487 PRK10689 transcription-repair 33.3 2.3E+02 0.0049 41.7 11.6 103 1055-1158 620-728 (1147)
488 PF13607 Succ_CoA_lig: Succiny 33.1 2E+02 0.0044 31.8 8.8 85 1084-1189 3-89 (138)
489 PF12776 Myb_DNA-bind_3: Myb/S 33.1 73 0.0016 32.2 5.1 54 1662-1721 1-67 (96)
490 KOG0740 AAA+-type ATPase [Post 33.0 52 0.0011 42.6 4.9 45 545-595 188-232 (428)
491 PHA00350 putative assembly pro 32.8 1.2E+02 0.0025 39.4 7.8 19 547-565 5-23 (399)
492 COG4646 DNA methylase [Transcr 32.5 26 0.00057 44.8 2.1 43 673-715 472-516 (637)
493 PRK09376 rho transcription ter 32.5 53 0.0012 42.3 4.8 37 532-569 159-195 (416)
494 PF04364 DNA_pol3_chi: DNA pol 32.4 1.5E+02 0.0032 32.7 7.6 79 1068-1163 15-97 (137)
495 TIGR02760 TraI_TIGR conjugativ 32.2 1.7E+02 0.0036 45.4 10.5 133 522-686 1017-1151(1960)
496 PRK05973 replicative DNA helic 32.1 62 0.0014 38.9 5.0 42 539-583 60-101 (237)
497 COG1066 Sms Predicted ATP-depe 31.8 1.8E+02 0.0038 37.8 8.9 86 547-660 97-182 (456)
498 COG3973 Superfamily I DNA and 30.7 85 0.0019 42.0 6.2 51 541-591 224-277 (747)
499 PTZ00062 glutaredoxin; Provisi 30.6 2.5E+02 0.0054 33.2 9.5 75 1070-1145 101-181 (204)
500 COG4098 comFA Superfamily II D 30.5 1.1E+02 0.0023 38.7 6.5 96 560-660 291-387 (441)
No 1
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=6.1e-203 Score=1852.85 Aligned_cols=1203 Identities=42% Similarity=0.627 Sum_probs=883.7
Q ss_pred HHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHhhhhhHHhchhhhhHHHHHhhhcCCCCCCCCCCCCCCCCccccccc
Q 000139 94 VNISKDVKKFWMKIEKLVLYKHQMEVDVRKKKALDKQLEFLLGQTERYSSMLAENLVDSHKPVQQSPMREQPGIQYKEAD 173 (2062)
Q Consensus 94 ~~iak~v~~FW~~iek~v~~K~Q~~leekrKkALd~~L~fivgqTEkys~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 173 (2062)
...|+++..||.+.++++.||+|.+..+||+++|++|+.++++++.+|+.|+...|..+..+............++.
T Consensus 192 ~~~a~d~~~f~ts~eevd~fk~qgr~~~kr~akl~~h~l~~~a~~~k~qr~s~qrl~k~~ep~~~k~~~~~~ll~~~--- 268 (1958)
T KOG0391|consen 192 QALAGDLVAFATSTEEVDLFKRQGRMPSKRMAKLSKHPLTPQAAQLKGQRQSQQRLDKSTEPPVQKAASLHTLLPQL--- 268 (1958)
T ss_pred HHHhhhhhccccCcchhhhhhhccccccchhhhhhcCcchHHHHHHhhhHHHHhhcCCCCCchhccccccccccccc---
Confidence 56789999999999999999999999999999999999999999999999999999876655433111111101000
Q ss_pred cCCCCCCCcCccccccchhhccCCCCCCCCccCCCccccCCCCCCCccchhchHHHHhhhc--hHHHHHHHHHhhcCCCC
Q 000139 174 ENGAEEPGVQSKEADEDDAEQHSGFEPQLDAADIDEEYDVHSEDESEDDEHTIEEDEALIT--EEERKEELEALHNETDI 251 (2062)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ddef~~~~~ee~eDDEeTIEeeE~~~~--~~d~~~ELe~L~~E~El 251 (2062)
.+. .......-.++.+..|-++.+.. .+++++|+.+.+.+. .+-.+.+++.|+..+++
T Consensus 269 -~~~------------------~pp~~~t~~~d~ia~f~aqqd~~-~h~d~qIeie~~~e~~~~e~~k~~i~~lk~v~~~ 328 (1958)
T KOG0391|consen 269 -PGR------------------LPPAGVTTAADSIALFFAQQDQV-VHADTQIEIEVKTEQPNVEIPKPPISQLKIVPSQ 328 (1958)
T ss_pred -ccc------------------CCCCCCCccccchhhhhhcchhh-hhhhhhhhhhhhhccccccccccchhhccccccc
Confidence 000 11112234456677888887655 788999999988874 46688999999999999
Q ss_pred CHHHHHhhhcccccCCCCcccCCCCCCCCcccccccccCCCCCcccCCccCCCCcccccccccCCCCccccccccccccc
Q 000139 252 PLQELLKRYAVDKVGRESSAEMGEDEAEPTVVEEGHVQGNGNDLLAGSKLDTSGSLVRRCDEINGGLSISENHLLDIETS 331 (2062)
Q Consensus 252 PLEELL~~y~~~~~~~~~~~~~~~~~~e~~~~~e~~~~~~~~~~~~~~e~d~~~~~~~~~~e~~~~~~~~e~~~~~~~~~ 331 (2062)
|...+|.-...+....++.+. . .+++.-+.--++..+-.+. ....
T Consensus 329 p~q~~lhv~~pa~e~gps~~r-------~------------------------~p~sh~sfa~~~v~e~~n~----~~pg 373 (1958)
T KOG0391|consen 329 PAQLALHVPTPASEPGPSPAR-------S------------------------SPVSHPSFATNKVLEPVNS----RTPG 373 (1958)
T ss_pred hHHHhhcCCCccccCCCCchh-------c------------------------Cccccchhhhhcccccccc----cCcc
Confidence 999998665543211111100 0 0110000000000000000 0000
Q ss_pred ccccccccCCCchhhhccccCCCCccCccccccCCCCCCCccchHHHHHHhhhcCCChHHHHHHhhccCCCCHHHHHHHh
Q 000139 332 QVRDTSKKSGASTQKQALYDFSDEQEDGDFVVATGEDKDDETTLSEEEELAKADSNNYIDEIALLQKESEIPVEELLARY 411 (2062)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~deeED~df~~~e~e~~DdE~Ti~eEE~~e~~~~~d~~~E~~~L~~e~~m~ieeLla~~ 411 (2062)
.....+.++.... .+.-.+.++..|+++...+++..+.+++++..|... .++|++.++.++.++.+++...|...|
T Consensus 374 vv~s~p~ps~~~~--rn~~~~h~s~~de~seq~~ee~~~~~~~~~~~e~~~--~evd~l~~lse~drddels~y~le~ey 449 (1958)
T KOG0391|consen 374 VVASAPTPSQSPA--RNATSSHDSSQDELSEQITEENQVHQRIAELREAGL--WEVDRLPKLSEADRDDELSDYLLEEEY 449 (1958)
T ss_pred eeeccCChhhccc--cccccccccccchhhhhhHHHHHHhHhHHHhhhcch--hhhhhhhhhhccccccchhhhcccHHH
Confidence 0000011111101 111122344455555554444444444443333322 368899999999999999999998888
Q ss_pred hccccccc-------------------------CCccccccccccc----CCCCCCCCccccccccccccCCCCC-----
Q 000139 412 RKDMKINK-------------------------ISEDESDYASALS----DDLSDSPAHEDGELKLENDFMDGNV----- 457 (2062)
Q Consensus 412 ~~~~~~~~-------------------------~s~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~----- 457 (2062)
-....... ++...++.++..+ ++.-||+++..++++.+..+.|...
T Consensus 450 ~~Ay~~~~as~e~~~~de~~e~kqlkE~~G~~eed~~~se~kss~s~s~ed~s~dsese~seeee~s~ss~d~t~e~~~s 529 (1958)
T KOG0391|consen 450 WMAYDVAAASKEVRTVDEHHEEKQLKEERGKKEEDSGMSERKSSASISLEDDSVDSESETSEEEEASESSVDHTTELSNS 529 (1958)
T ss_pred hhccCccccccccchHHHHHHHHhhhhhcCCcccccCcccccccccceeeeccccccCcchhhhccCccccccchhhccc
Confidence 66432110 0000000000000 0000111111111111111111000
Q ss_pred -----CC--CCccccC----CcccccccCCCccc--------ccccchhhhhHHHHHHHhhcCCCCCCccccccccccCC
Q 000139 458 -----DP--GASQLVM----LPLTEKQEGGSEKK--------SEEGRESENRIADAAAAARSAQPTGITFSTTQVRTKFP 518 (2062)
Q Consensus 458 -----~~--~~~~~~~----~~~~~~~e~~~~~~--------~~~~~~~~~~i~~~aa~a~s~qP~g~~~~tt~vkt~vP 518 (2062)
.+ +.+.... .......+...+.. ..-+....++|+++++.|++++|+|+++.++.|++++|
T Consensus 530 a~~ae~~~~Dg~~~led~~~~yv~s~sed~dE~~~d~~~~~~g~~~~~~~keiadIaavae~~qpKgytl~tTqVktpvP 609 (1958)
T KOG0391|consen 530 AKEAELPLLDGMKLLEDAFLGYVTSGSEDADECPGDRESAERGNIGKPNAKEIADIAAVAEAIQPKGYTLVTTQVKTPVP 609 (1958)
T ss_pred ccccccccccchhhhcccccceecccccchhhcccccCCcccCCcCCCchhhhhhHHHHHHhhCccceeeeeeeeccCch
Confidence 00 0000000 00000000000000 01122345689999999999999999999999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCC
Q 000139 519 FLLKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCP 598 (2062)
Q Consensus 519 ~lLk~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw~P 598 (2062)
++|+|.||+||++||+||+++|++++|||||||||||||||+|+|++||+|.+|+|||||||||+|+|.||++||+||||
T Consensus 610 sLLrGqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEMElKRwcP 689 (1958)
T KOG0391|consen 610 SLLRGQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEMELKRWCP 689 (1958)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHHHhhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHcccCceEE
Q 000139 599 AFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRI 678 (2062)
Q Consensus 599 ~lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L~a~~RL 678 (2062)
+|+|++|+|+.++|+.+|+||.+++.||||||||.++.+|...|++.+|.|+||||||+|||++|++|++|++|++.+||
T Consensus 690 glKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEaqnIKnfksqrWQAllnfnsqrRL 769 (1958)
T KOG0391|consen 690 GLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEAQNIKNFKSQRWQALLNFNSQRRL 769 (1958)
T ss_pred cceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHHHhhccceeehhhhhhhcchhHHHHHHHhccchhhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCcccccccccHHHHHHHHHhhhhhhhhhhhhhHhhcCCC
Q 000139 679 LLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRRLKRDVEKQLPM 758 (2062)
Q Consensus 679 LLTGTPLQNsL~ELwSLL~FL~P~iF~s~~eFkewFsnPisg~~eg~~~~n~~~i~rLhkvLrpFmLRRtK~DVekqLP~ 758 (2062)
|||||||||+|||||+|||||||++|.+|..|+.||++|++||+++...++...|.|||+|||||+|||+|+||+||||+
T Consensus 770 LLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgmiEgsqeyn~klV~RLHkVlrPfiLRRlK~dVEKQlpk 849 (1958)
T KOG0391|consen 770 LLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMIEGSQEYNHKLVIRLHKVLRPFILRRLKRDVEKQLPK 849 (1958)
T ss_pred eecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhcccchhhchHHHHHHHHHhHHHHHHHHHHHHHHhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEecCCHHHHHHHHHHHHhHHHHHHhhhcchhhHHHHHHHHHHHhCCCcccCCCCcccccccccccccccccc--
Q 000139 759 KQEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMSGIDSQLSSSV-- 836 (2062)
Q Consensus 759 K~EhVV~c~LSkrQR~LYdd~is~~~t~~~L~sgn~~silnvLmqLRKvCNHP~Lfe~r~i~S~f~~~~~~~~l~s~~-- 836 (2062)
||||||+|+||++||+||++||++..|+++|++|||++++|+|||||||||||+||++|++.++|...++.+..++.+
T Consensus 850 KyEHvv~CrLSkRQR~LYDDfmsq~~TKetLkSGhfmsVlnilmqLrKvCNHPnLfEpRpv~ssfV~e~l~~s~as~~~r 929 (1958)
T KOG0391|consen 850 KYEHVVKCRLSKRQRALYDDFMSQPGTKETLKSGHFMSVLNILMQLRKVCNHPNLFEPRPVGSSFVAEPLEYSSASKITR 929 (1958)
T ss_pred hhhhheeeehhhhHHHHHHHHhhccchhhHhhcCchhHHHHHHHHHHHHcCCCCcCCCCCCCcccccCceeccccccchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999888776432
Q ss_pred --cccCCCCCC-------------cch--------------hhcccc------------ccccccccccCccchhh----
Q 000139 837 --CSMLSPSPL-------------STA--------------DLKGLG------------LLFTNLDFSMNSWESDE---- 871 (2062)
Q Consensus 837 --~~~l~~~~~-------------~~~--------------dl~~l~------------ll~~~le~~~~~~e~~e---- 871 (2062)
..++...+. ..+ ++..+. ..|.......+.+...+
T Consensus 930 ~l~el~~k~p~~~~ls~~p~~~~vp~v~pas~~~sAspl~s~l~~ls~~~rPp~pt~~g~~F~~~aa~atsphteea~~~ 1009 (1958)
T KOG0391|consen 930 HLAELLSKKPIPRKLSEEPSTSAVPAVRPASAKLSASPLASALPQLSLRGRPPIPTFAGAPFQTSAASATSPHTEEASAS 1009 (1958)
T ss_pred hhhhhccCCCCchhhhcCCCcccccccchhhhhhcccccccccccccCCCCCCCccccccccccchhcccCCcccccccc
Confidence 222222221 000 011111 11222222222222211
Q ss_pred ---------------hhhhcCchhHHHHhhhcccc---------------c--------c----cCCcc-----------
Q 000139 872 ---------------LNAIATPASLIKERADLNNL---------------E--------E----VGPFC----------- 898 (2062)
Q Consensus 872 ---------------~~~l~tp~~li~~~~~l~~~---------------~--------~----~~p~~----------- 898 (2062)
+..+..|..++++......+ . . ..+..
T Consensus 1010 ~v~r~~~~~~va~~q~r~lt~p~~~veq~n~~k~~~htt~~~p~~~~~svl~~~sv~t~pl~~ap~p~~~~l~~a~gsr~ 1089 (1958)
T KOG0391|consen 1010 SVARLPSGEVVAIAQLRSLTGPQSRVEQPNTPKTLQHTTAGQPLQLQGSVLQIVSVPTQPLLRAPGPVVMALHGALGSRP 1089 (1958)
T ss_pred chhcccchheeeccccccccCcHhHhhcCCCceeeeeecccCccccccceeeeccccccccccCCCCcceecchhhccCC
Confidence 11111122222211100000 0 0 00000
Q ss_pred -------------ccccccCCchHH------HHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCc
Q 000139 899 -------------THRKRLNGTSIF------EKIRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHP 959 (2062)
Q Consensus 899 -------------~~~~~~~gt~~~------e~l~~~l~eer~~~~~~~~~~~~~~n~~rc~~~p~y~~~L~~ll~~~~p 959 (2062)
.......|+... ..+...+.++|.+....++..+...+ .|+|+..+.+++.+..+
T Consensus 1090 pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~klee~Rkrql~erl~ri~~~~------APvyg~e~l~~c~lp~e 1163 (1958)
T KOG0391|consen 1090 PVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGGKLEEERKRQLKERLDRIYLVN------APVYGRELLRICALPSE 1163 (1958)
T ss_pred CCCCCCccccccccCCCCCcchhhhccCCCccccccchhhHHHHHHHHHHHHHhhcc------Ccccchhhhhhhccchh
Confidence 000011111110 11233567778888888887776655 89999999888877654
Q ss_pred chhhhhhhhhhhhhccchhhhhhccChHHHHHHhhhhhhhhhhcccccCCCCCccccCCCCCcccccc-chhhhhccccC
Q 000139 960 VCDILQQKTVRRSYLYSSKLADIVLSPVERFQRMIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQP-TYKEKCSEVLS 1038 (2062)
Q Consensus 960 ~~~~~~~~~~~~~~~~ss~L~~~v~s~~erl~~l~~lie~f~~~vp~~~ap~p~~~~~~~~~~~~l~~-~~~~~~~~~l~ 1038 (2062)
..... .+.........+..+++.+..+|++|.|++|.+.++++.++..+++..+.... .+.......+.
T Consensus 1164 ~i~p~----------~~ea~~e~~l~~~r~le~l~~iIdrfafv~ppvva~ppslra~~ppp~~~~r~r~~~~qlrsel~ 1233 (1958)
T KOG0391|consen 1164 GIVPW----------RSEAPSELMLTLCRCLESLQDIIDRFAFVIPPVVAAPPSLRAPRPPPLYSHRMRILRQQLRSELA 1233 (1958)
T ss_pred hhccc----------cccCchhhhhhHHHHHHHHHHHHHHheeecccccCCChhhcCCCCCcccchHHHHHHHHHHHHhc
Confidence 32211 12233344556677788899999999999999999999999888744333222 34445556677
Q ss_pred CCCCCchhhhhhcccccCCccccccccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCH
Q 000139 1039 PLLFPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQP 1118 (2062)
Q Consensus 1039 ~~l~~l~~~~~~~~~~fPd~rLiq~dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~ 1118 (2062)
+++.+ ....+.+.++||++||||||||||++|+.||++|+.+||||||||||++|||+|+.||++|||.|+||||+|++
T Consensus 1234 p~~~~-~q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~v 1312 (1958)
T KOG0391|consen 1234 PYFQQ-RQTTAPRLLQFPELRLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSV 1312 (1958)
T ss_pred cccch-hhccchhhhcCcchheeecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccH
Confidence 88877 48888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHH
Q 000139 1119 EERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEEN 1198 (2062)
Q Consensus 1119 eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~ 1198 (2062)
+|||.+|++||.|++|||||||||+||+|||||+||||||||+||||+||+|||||||||||||+|||||||+++|||||
T Consensus 1313 EqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEen 1392 (1958)
T KOG0391|consen 1313 EQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEEN 1392 (1958)
T ss_pred HHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCccccccCChhhhhcCCCCCchhhhhHHHhhhcCCCccCChhh-HHHHHHhhhchHHHH
Q 000139 1199 ILKKANQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRTLPMKTMQKEKAINNGNEVSLSNAD-VEAALKCVEDEADYM 1277 (2062)
Q Consensus 1199 Ilkka~qKr~L~~~vIq~g~ft~~~fk~~di~eLF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~al~~aEde~d~~ 1277 (2062)
||+++++||+|++++||||+|+++||++.+++|||++..+........ .......+++.. +|.||+.||||+|+.
T Consensus 1393 iLkkanqKr~L~evaiqggdfTt~ff~q~ti~dLFd~~~p~s~~~~~~----~ad~~v~~see~~le~alA~aede~dV~ 1468 (1958)
T KOG0391|consen 1393 ILKKANQKRMLDEVAIQGGDFTTAFFKQRTIRDLFDVYLPESDVGVPA----KADEFVVASEEPSLEVALAPAEDEEDVE 1468 (1958)
T ss_pred HHhhhhHHHHHHHHhhccCCccHHHHhhhhHHHHhcCCCccccCCCCc----cchhhhhhcCcchHHHHhhhhcchHHHH
Confidence 999999999999999999999999999999999999854322111111 011122334444 999999999999999
Q ss_pred HHHHHhhHHhhhcccccccccCCCCCcccccccccCCCCCCCCCCcccccCCCCcccCCCCCchhhhhhhhcccchhhHH
Q 000139 1278 ALKRAEQEEAVDNQEFTEEAVGRPEDDELVIEDTVRTDEPTDQGGCMTANNDNGMMLTGNDPKEERALTFAAKEDDVDML 1357 (2062)
Q Consensus 1278 a~~~~~~e~~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 1357 (2062)
|++.|++|++.++++|+|..... .+.+.+++
T Consensus 1469 Aak~a~~e~e~d~~ef~E~~~~p-----------------------------------~s~~~ee~-------------- 1499 (1958)
T KOG0391|consen 1469 AAKSAEAEEEDDQAEFDEGVDSP-----------------------------------NSNCQEEP-------------- 1499 (1958)
T ss_pred HHHHHHHHHHhhhhhhhcccCCC-----------------------------------CCCcccch--------------
Confidence 99999999999999999974110 00112221
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhhcChhhHHhhhhhhhcccc-cchH-HHHHHHHHhHhHHHHHHHHHhHHHHHhccCCCC
Q 000139 1358 ADVKQMAAAAAAAGEAISSFENQLRPIDRYAIRFLELWDPI-IDKT-AVESEVKFEEREWELDRIEKYKEEMEAEIDDDE 1435 (2062)
Q Consensus 1358 ~~~~~~~~~~~~~~~~~~~~~~ql~pierya~~~le~~~~~-~~~~-~~~~~~~~~~~~we~~~l~~~ke~~~~~~~~~~ 1435 (2062)
.|.+++..||+||||||||||||||++++. +.++ ..+.+|..++|+|+--+|+.++-.. .+|++
T Consensus 1500 -----------~a~ee~adl~eqltPIe~YainfLe~~~~~e~Eee~~eeeav~~a~rd~d~~nl~~~rl~~---eeee~ 1565 (1958)
T KOG0391|consen 1500 -----------SADEELADLMEQLTPIERYAINFLELFYTSEFEEERNEEEAVMTAVRDEDFWNLKTLRLRL---EEEED 1565 (1958)
T ss_pred -----------hhHHHHHHHHhccCcHHHHHHHHHHhccchhhhhhhhHHHHHHHHHhHHhhhcchhhccch---hhhcc
Confidence 123456679999999999999999998877 4333 3457899999999999998774322 25566
Q ss_pred Ccceeee
Q 000139 1436 EPLVYER 1442 (2062)
Q Consensus 1436 ~~l~y~~ 1442 (2062)
++|+|+|
T Consensus 1566 ell~~~~ 1572 (1958)
T KOG0391|consen 1566 ELLGYTR 1572 (1958)
T ss_pred cccccCc
Confidence 8999998
No 2
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=2.9e-117 Score=1078.87 Aligned_cols=510 Identities=47% Similarity=0.807 Sum_probs=446.0
Q ss_pred CCCCCC-CCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHH
Q 000139 517 FPFLLK-FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLK 595 (2062)
Q Consensus 517 vP~lLk-~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkk 595 (2062)
.|..++ +.||+||++||+||+++|.++.|||||||||||||+||||||.++....+..|||||+||.|++.||.+||++
T Consensus 159 sP~~v~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~Ef~r 238 (971)
T KOG0385|consen 159 SPSYVKGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMNEFKR 238 (971)
T ss_pred CchhhcCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHHHHHH
Confidence 588887 9999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred HCCCCeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHcccCc
Q 000139 596 WCPAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSK 675 (2062)
Q Consensus 596 w~P~lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L~a~ 675 (2062)
|||++++++|+|.+.+|...+...+..+.|+||||||+++.++...|++++|.||||||||+|||.+|.+++.|+.|++.
T Consensus 239 f~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~f~~~ 318 (971)
T KOG0385|consen 239 FTPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKSFLKKFNWRYLVIDEAHRIKNEKSKLSKILREFKTD 318 (971)
T ss_pred hCCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHHHHhcCCceEEEechhhhhcchhhHHHHHHHHhccc
Confidence 99999999999999999999888888899999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCcccccccccHHHHHHHHHhhhhhhhhhhhhhHhhc
Q 000139 676 RRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRRLKRDVEKQ 755 (2062)
Q Consensus 676 ~RLLLTGTPLQNsL~ELwSLL~FL~P~iF~s~~eFkewFsnPisg~~eg~~~~n~~~i~rLhkvLrpFmLRRtK~DVekq 755 (2062)
+||||||||+||||.|||+||+||+|++|.+...|..||..-. ...+.+.+.+||.+|+||+|||+|.+|++.
T Consensus 319 nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~-------~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~s 391 (971)
T KOG0385|consen 319 NRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTN-------CEGDQELVSRLHKVLRPFLLRRIKSDVEKS 391 (971)
T ss_pred ceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccc-------cccCHHHHHHHHhhhhHHHHHHHHHhHhhc
Confidence 9999999999999999999999999999999999999997531 223445899999999999999999999999
Q ss_pred CCCceeEEEEecCCHHHHHHHHHHHHhHHHH-HHhhhcchhhHHHHHHHHHHHhCCCcccCCCCcccccccccccccccc
Q 000139 756 LPMKQEHVIYCRLSKRQRNLYEDFIASSETQ-ATLASANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMSGIDSQLSS 834 (2062)
Q Consensus 756 LP~K~EhVV~c~LSkrQR~LYdd~is~~~t~-~~L~sgn~~silnvLmqLRKvCNHP~Lfe~r~i~S~f~~~~~~~~l~s 834 (2062)
||||.|.+++|.||+.|+.+|..++...-.. .....+....++|++||||||||||+||++..
T Consensus 392 LppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~e---------------- 455 (971)
T KOG0385|consen 392 LPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAE---------------- 455 (971)
T ss_pred CCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCC----------------
Confidence 9999999999999999999999887543221 11222256889999999999999999996521
Q ss_pred cccccCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHhhhcccccccCCccccccccCCchHHHHHH
Q 000139 835 SVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVGPFCTHRKRLNGTSIFEKIR 914 (2062)
Q Consensus 835 ~~~~~l~~~~~~~~dl~~l~ll~~~le~~~~~~e~~e~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~~~gt~~~e~l~ 914 (2062)
++|
T Consensus 456 -------Pg~---------------------------------------------------------------------- 458 (971)
T KOG0385|consen 456 -------PGP---------------------------------------------------------------------- 458 (971)
T ss_pred -------CCC----------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhccchhhhhhccChHHHHHHhh
Q 000139 915 KALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLSPVERFQRMI 994 (2062)
Q Consensus 915 ~~l~eer~~~~~~~~~~~~~~n~~rc~~~p~y~~~L~~ll~~~~p~~~~~~~~~~~~~~~~ss~L~~~v~s~~erl~~l~ 994 (2062)
.|..
T Consensus 459 ------------------------------pytt---------------------------------------------- 462 (971)
T KOG0385|consen 459 ------------------------------PYTT---------------------------------------------- 462 (971)
T ss_pred ------------------------------CCCc----------------------------------------------
Confidence 0000
Q ss_pred hhhhhhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhcccccCCccccccccchHHHHHHH
Q 000139 995 GLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQFDCGKLQELAIL 1074 (2062)
Q Consensus 995 ~lie~f~~~vp~~~ap~p~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~fPd~rLiq~dSGKLq~L~~L 1074 (2062)
+. -+.+.||||.+|++|
T Consensus 463 --------------------------------------------------------------de-hLv~nSGKm~vLDkL 479 (971)
T KOG0385|consen 463 --------------------------------------------------------------DE-HLVTNSGKMLVLDKL 479 (971)
T ss_pred --------------------------------------------------------------ch-HHHhcCcceehHHHH
Confidence 00 012359999999999
Q ss_pred HHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcC-CCceEEEEeccccccccCcccC
Q 000139 1075 LRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTN-PKIFLFILSTRSGGVGINLVGA 1153 (2062)
Q Consensus 1075 LrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D-~~IfVfLLSTrAGG~GLNLT~A 1153 (2062)
|.+|++.||||||||||++|||||++|+.++||.||||||+|+.++|...|+.||.. +.+|||||||||||+||||++|
T Consensus 480 L~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aA 559 (971)
T KOG0385|consen 480 LPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAA 559 (971)
T ss_pred HHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999984 4899999999999999999999
Q ss_pred CEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCChhhhh
Q 000139 1154 DTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNTEFFKKLDPMELF 1233 (2062)
Q Consensus 1154 DtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~qKr~L~~~vIq~g~ft~~~fk~~di~eLF 1233 (2062)
|||||||+||||++|.||+||||||||+++|+|||||+++||||+|+.+|.+|++|.++|||+|......-+...-.+++
T Consensus 560 DtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~Ld~~VIq~g~l~~~~~~~~~k~~~l 639 (971)
T KOG0385|consen 560 DTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLRLDKLVIQQGRLEEQKSNGLGKDELL 639 (971)
T ss_pred cEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhchhhhhhccCchhhhhccccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999994443333332233344
Q ss_pred cCCCCCchhhhhHHHhhhcCCCccCChhhHHHHHHhhhch
Q 000139 1234 SGHRTLPMKTMQKEKAINNGNEVSLSNADVEAALKCVEDE 1273 (2062)
Q Consensus 1234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~aEde 1273 (2062)
...+- ..+. .....+...++ |++..|++.++.
T Consensus 640 ~~~r~------g~~~-~f~~~es~~~d-Did~il~~~e~k 671 (971)
T KOG0385|consen 640 NLLRF------GADP-VFESKESTISD-DIDRILERGEEK 671 (971)
T ss_pred HHHHc------Cchh-hhhhcccccch-hHHHHHHhhhhh
Confidence 32110 0011 11112334455 899999988843
No 3
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=1.8e-112 Score=1019.31 Aligned_cols=617 Identities=42% Similarity=0.746 Sum_probs=471.6
Q ss_pred cccCCCCCCCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHH
Q 000139 514 RTKFPFLLKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEF 593 (2062)
Q Consensus 514 kt~vP~lLk~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Ef 593 (2062)
-++.|.+|+++|++||+.||+||+++|.++.|||||||||||||+|+|++++||+..+++|||+|||+|+|++.||..||
T Consensus 557 tV~qPkil~ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~NWaqEi 636 (1185)
T KOG0388|consen 557 TVPQPKILKCTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHNWAQEI 636 (1185)
T ss_pred eccCchhhhhhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHHhHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCeEEEEeCChhhHHhhhhccCC------CCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHH
Q 000139 594 LKWCPAFKILTYFGSAKERKFKRQGWLK------PNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQ 667 (2062)
Q Consensus 594 kkw~P~lkVl~y~Gs~kerk~~r~gw~k------~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~q 667 (2062)
.+|||.|+++.|.|+..+|+..++.|.. ...|||+||||+++..|...|++++|.|+||||||.||...|.+|+
T Consensus 637 srFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qkvKWQYMILDEAQAIKSSsS~RWK 716 (1185)
T KOG0388|consen 637 SRFLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQKVKWQYMILDEAQAIKSSSSSRWK 716 (1185)
T ss_pred HHhCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHhhhhhheehhHHHHhhhhhhhHHH
Confidence 9999999999999999999999998874 4579999999999999999999999999999999999999999999
Q ss_pred HHHcccCceEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCcccccccccHHHHHHHHHhhhhhhhhh
Q 000139 668 TLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRR 747 (2062)
Q Consensus 668 aL~~L~a~~RLLLTGTPLQNsL~ELwSLL~FL~P~iF~s~~eFkewFsnPisg~~eg~~~~n~~~i~rLhkvLrpFmLRR 747 (2062)
.|..|+|++|||||||||||+..|||.||||+||.+|.+|.+|.+||+.-|....+.....|+..+.|||.+|+||||||
T Consensus 717 tLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~tlneqqL~RLH~ILKPFMLRR 796 (1185)
T KOG0388|consen 717 TLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNTTLNEQQLQRLHAILKPFMLRR 796 (1185)
T ss_pred HHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcCCcCHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988778788899999999999999999999
Q ss_pred hhhhHhhcCCCceeEEEEecCCHHHHHHHHHHHHhHHHHHHhhhcchhhHHHHHHHHHHHhCCCcccCCCCccccccccc
Q 000139 748 LKRDVEKQLPMKQEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMSG 827 (2062)
Q Consensus 748 tK~DVekqLP~K~EhVV~c~LSkrQR~LYdd~is~~~t~~~L~sgn~~silnvLmqLRKvCNHP~Lfe~r~i~S~f~~~~ 827 (2062)
.|++|...|..|++..|+|.||.+|+.||..+-.+.. .+.+.+++||||||||||+||+.....+.+
T Consensus 797 vKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS---------~~E~~~~vmQlrKVCNHPdLFer~e~~s~L---- 863 (1185)
T KOG0388|consen 797 VKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSIS---------SMEMENLVMQLRKVCNHPDLFERLEPRSGL---- 863 (1185)
T ss_pred HHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhh---------HHHHHHHHHHHHHhcCChHHHhhcCCccee----
Confidence 9999999999999999999999999999998865543 223446999999999999999875433221
Q ss_pred ccccccccccccCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHhhhcccccccCCccccccccCCc
Q 000139 828 IDSQLSSSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVGPFCTHRKRLNGT 907 (2062)
Q Consensus 828 ~~~~l~s~~~~~l~~~~~~~~dl~~l~ll~~~le~~~~~~e~~e~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~~~gt 907 (2062)
...+++.+..++..+. +. +. +..|.-+.+... ++ .-.
T Consensus 864 -~~~V~~nl~dv~S~Gr---------np----i~-------------ykiP~L~~~d~l--e~--------------~~f 900 (1185)
T KOG0388|consen 864 -SLEVSDNLGDVVSFGR---------NP----ID-------------YKIPSLVAKDAL--EM--------------FRF 900 (1185)
T ss_pred -EEEcccCHHHHHhCCC---------Cc----ee-------------ecchHHHHHHHH--HH--------------HHH
Confidence 1112222111110000 00 00 000110000000 00 000
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhccchhhhhhccChH
Q 000139 908 SIFEKIRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLSPV 987 (2062)
Q Consensus 908 ~~~e~l~~~l~eer~~~~~~~~~~~~~~n~~rc~~~p~y~~~L~~ll~~~~p~~~~~~~~~~~~~~~~ss~L~~~v~s~~ 987 (2062)
++|+-+.+ +.- ......-....+|+.... -...||..... ..+... +...+..+ .....+.
T Consensus 901 niye~i~~-~~g--~~~~v~Geg~~~w~~~l~--~e~k~G~~~~~-------n~e~~~-Kavtr~ll------~p~~~~~ 961 (1185)
T KOG0388|consen 901 NIYEMIER-ING--LRRIVNGEGPNAWYLRLS--LEFKYGGYVFR-------NVEEAG-KAVTRNLL------NPESSLL 961 (1185)
T ss_pred hHHHHHHH-Hhh--hHhhhcCCCcchhcccce--eeeccCCcccc-------cHHHHH-HHHHHHhc------Ccccchh
Confidence 11111000 000 000000001112221110 00011110000 000000 11111111 1111111
Q ss_pred HHHHHhhh-----hhhhhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhcccccCCccccc
Q 000139 988 ERFQRMIG-----LVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQ 1062 (2062)
Q Consensus 988 erl~~l~~-----lie~f~~~vp~~~ap~p~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~fPd~rLiq 1062 (2062)
+...+++. +....-|+.|.+.+|+-........+.+ -....+......++.|....+.
T Consensus 962 e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeI-----------------d~E~~~~pLn~~i~~Ppm~~Fi 1024 (1185)
T KOG0388|consen 962 ESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEI-----------------DLENRHIPLNTTIYVPPMNTFI 1024 (1185)
T ss_pred HHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCC-----------------CccccCcccccceecCcHHhhh
Confidence 11111111 1122246778777765432111111100 0111223334455677777777
Q ss_pred cccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecc
Q 000139 1063 FDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTR 1142 (2062)
Q Consensus 1063 ~dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTr 1142 (2062)
.+||||++|+.||.+|+++|||||+|.|||+|+|+|+++|.++||+|+||||+.+...|..++..|+. +.|||||||||
T Consensus 1025 tdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~-sdiFvFLLSTR 1103 (1185)
T KOG0388|consen 1025 TDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQA-SDIFVFLLSTR 1103 (1185)
T ss_pred ccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccC-CceEEEEEecc
Confidence 89999999999999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred ccccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 000139 1143 SGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNTE 1222 (2062)
Q Consensus 1143 AGG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~qKr~L~~~vIq~g~ft~~ 1222 (2062)
+||+|||||+||||||||+||||+.|.||+||+||+||||+|+||||++.+||||+|+.+++||..+.++||.||.|..+
T Consensus 1104 AGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK~~vQq~Vm~G~~~qg~ 1183 (1185)
T KOG0388|consen 1104 AGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQKDEVQQMVMHGNIFQGE 1183 (1185)
T ss_pred cCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhhHHHHHHHHHcCCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887655
Q ss_pred c
Q 000139 1223 F 1223 (2062)
Q Consensus 1223 ~ 1223 (2062)
.
T Consensus 1184 n 1184 (1185)
T KOG0388|consen 1184 N 1184 (1185)
T ss_pred C
Confidence 3
No 4
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=1.6e-102 Score=954.41 Aligned_cols=517 Identities=45% Similarity=0.752 Sum_probs=418.6
Q ss_pred cccCCCCCC--CCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHH
Q 000139 514 RTKFPFLLK--FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWET 591 (2062)
Q Consensus 514 kt~vP~lLk--~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~ 591 (2062)
.+..|.+|. .+|.+||+.||+||.-+|.++++||||||||||||+|+|||+++|.. .|+.||||||||+|++.||.+
T Consensus 387 ~~~qp~~l~s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq-~g~~gpHLVVvPsSTleNWlr 465 (941)
T KOG0389|consen 387 ITEQPKLLSSGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQ-IGNPGPHLVVVPSSTLENWLR 465 (941)
T ss_pred cccCccccCCCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHH-cCCCCCcEEEecchhHHHHHH
Confidence 345677775 68999999999999999999999999999999999999999999976 677999999999999999999
Q ss_pred HHHHHCCCCeEEEEeCChhhHHhhhhccCC-CCCceEEEEehhhhhh---chhhhhccCeeEEEEcCccccCChhhHHHH
Q 000139 592 EFLKWCPAFKILTYFGSAKERKFKRQGWLK-PNSFHVCITTYRLIIQ---DSKVFKRKKWKYLILDEAHLIKNWKSQRWQ 667 (2062)
Q Consensus 592 Efkkw~P~lkVl~y~Gs~kerk~~r~gw~k-~~~fdVVITSYe~l~~---d~~~L~r~~W~lVILDEAH~IKN~~Sk~~q 667 (2062)
||.+|||.++|..|||++.+|+..|..... ...|+|++|||.++.. |..+|++.+|+|||+||+|.+||..|.+|+
T Consensus 466 Ef~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~ 545 (941)
T KOG0389|consen 466 EFAKWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYK 545 (941)
T ss_pred HHHHhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHHHH
Confidence 999999999999999999999988865432 2489999999999975 577899999999999999999999999999
Q ss_pred HHHcccCceEEEEeccCCCCChHHHHHHHHHhCCCCCCCh-HHHHHHhcCCCC-CcccccccccHHHHHHHHHhhhhhhh
Q 000139 668 TLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSH-QEFKDWFCNPIS-GMVEGQEKVNKEVVDRLHNVLRPFIL 745 (2062)
Q Consensus 668 aL~~L~a~~RLLLTGTPLQNsL~ELwSLL~FL~P~iF~s~-~eFkewFsnPis-g~~eg~~~~n~~~i~rLhkvLrpFmL 745 (2062)
.|.++++.+||||||||+||||.||||||.|++|++|.+. .++...|...-+ .....+....++.|.|...++.||+|
T Consensus 546 ~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFIL 625 (941)
T KOG0389|consen 546 HLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFIL 625 (941)
T ss_pred HhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHH
Confidence 9999999999999999999999999999999999999874 567777754332 11112233445679999999999999
Q ss_pred hhhhhhHhhcCCCceeEEEEecCCHHHHHHHHHHHHhHHHHHHhhhcc--hhhHHHHHHHHHHHhCCCcccCCCCccccc
Q 000139 746 RRLKRDVEKQLPMKQEHVIYCRLSKRQRNLYEDFIASSETQATLASAN--FFGMISVIMQLRKVCNHPDLFEGRPIVSSF 823 (2062)
Q Consensus 746 RRtK~DVekqLP~K~EhVV~c~LSkrQR~LYdd~is~~~t~~~L~sgn--~~silnvLmqLRKvCNHP~Lfe~r~i~S~f 823 (2062)
||+|.+|.++||||..+|.+|.|+..|+.+|+.++..........+.| ..+ .++||||||++|||-||..- |
T Consensus 626 RR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~-~~vlmqlRK~AnHPLL~R~~-----Y 699 (941)
T KOG0389|consen 626 RRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKS-GNVLMQLRKAANHPLLFRSI-----Y 699 (941)
T ss_pred HHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhcccccccccccc-chHHHHHHHHhcChhHHHHh-----c
Confidence 999999999999999999999999999999999988764333333333 222 67999999999999997210 0
Q ss_pred ccccccccccccccccCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHhhhcccccccCCccccccc
Q 000139 824 DMSGIDSQLSSSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVGPFCTHRKR 903 (2062)
Q Consensus 824 ~~~~~~~~l~s~~~~~l~~~~~~~~dl~~l~ll~~~le~~~~~~e~~e~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~ 903 (2062)
. ...+. .++ + ..+.. + . ...
T Consensus 700 ~----------------------de~L~----------------------~ma------k--~il~e-----~--a-y~~ 719 (941)
T KOG0389|consen 700 T----------------------DEKLR----------------------KMA------K--RILNE-----P--A-YKK 719 (941)
T ss_pred c----------------------HHHHH----------------------HHH------H--HHhCc-----h--h-hhh
Confidence 0 00000 000 0 00000 0 0 000
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhccchhhhhhc
Q 000139 904 LNGTSIFEKIRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSKLADIV 983 (2062)
Q Consensus 904 ~~gt~~~e~l~~~l~eer~~~~~~~~~~~~~~n~~rc~~~p~y~~~L~~ll~~~~p~~~~~~~~~~~~~~~~ss~L~~~v 983 (2062)
.+-..+++.+.- .+ +
T Consensus 720 ~n~qyIfEDm~~-------------------ms------------D---------------------------------- 734 (941)
T KOG0389|consen 720 ANEQYIFEDMEV-------------------MS------------D---------------------------------- 734 (941)
T ss_pred cCHHHHHHHHHh-------------------hh------------H----------------------------------
Confidence 000011111100 00 0
Q ss_pred cChHHHHHHhhhhhhhhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhcccccCCcccccc
Q 000139 984 LSPVERFQRMIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQF 1063 (2062)
Q Consensus 984 ~s~~erl~~l~~lie~f~~~vp~~~ap~p~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~fPd~rLiq~ 1063 (2062)
. ++..+...|.+ + ..+++++. .+.
T Consensus 735 ---f----elHqLc~~f~~----------------------------------~-------------~~f~L~d~--~~m 758 (941)
T KOG0389|consen 735 ---F----ELHQLCCQFRH----------------------------------L-------------SKFQLKDD--LWM 758 (941)
T ss_pred ---H----HHHHHHHhcCC----------------------------------C-------------cccccCCc--hhh
Confidence 0 00000000000 0 00111122 357
Q ss_pred ccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000139 1064 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1143 (2062)
Q Consensus 1064 dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrA 1143 (2062)
+|||+.+|..||.+++..|||||||||||.|||||+.+|+.+||+|+||||+|.+..||.+|+.||.|..||||||||+|
T Consensus 759 dSgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKA 838 (941)
T KOG0389|consen 759 DSGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKA 838 (941)
T ss_pred hhhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeecc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCC
Q 000139 1144 GGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGG 1218 (2062)
Q Consensus 1144 GG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~qKr~L~~~vIq~g~ 1218 (2062)
||.|||||+||+||+||.++||..|.||.|||||+||||+|+|||||+++||||+|++.+++|..|...+..++.
T Consensus 839 GG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~~~k 913 (941)
T KOG0389|consen 839 GGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTEDGK 913 (941)
T ss_pred CcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhccCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998876654
No 5
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=1.4e-102 Score=987.16 Aligned_cols=466 Identities=45% Similarity=0.760 Sum_probs=417.1
Q ss_pred CCCC-CCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHH
Q 000139 518 PFLL-KFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKW 596 (2062)
Q Consensus 518 P~lL-k~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw 596 (2062)
|..+ ...||+||++||+||+..|.++.|||||||||||||+|+|+||.++.....+.||+|||||.|++.+|++||..|
T Consensus 363 p~~~~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~W~~ef~~w 442 (1373)
T KOG0384|consen 363 PEYKGGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITAWEREFETW 442 (1373)
T ss_pred ccccccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHHHHHHHHHH
Confidence 4444 469999999999999999999999999999999999999999999998877999999999999999999999999
Q ss_pred CCCCeEEEEeCChhhHHhhhh-ccCCCC-----CceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHH
Q 000139 597 CPAFKILTYFGSAKERKFKRQ-GWLKPN-----SFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLL 670 (2062)
Q Consensus 597 ~P~lkVl~y~Gs~kerk~~r~-gw~k~~-----~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~ 670 (2062)
. .+++++|+|+...|..+++ .|.... .|+++||||+++.+|...|..++|.++++||||++||..|++|..|.
T Consensus 443 ~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN~~~~l~~~l~ 521 (1373)
T KOG0384|consen 443 T-DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKNDESKLYESLN 521 (1373)
T ss_pred h-hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhccCCcceeeecHHhhcCchHHHHHHHHH
Confidence 9 9999999999999988776 344333 69999999999999999999999999999999999999999999999
Q ss_pred cccCceEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCcccccccccHHHHHHHHHhhhhhhhhhhhh
Q 000139 671 NFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRRLKR 750 (2062)
Q Consensus 671 ~L~a~~RLLLTGTPLQNsL~ELwSLL~FL~P~iF~s~~eFkewFsnPisg~~eg~~~~n~~~i~rLhkvLrpFmLRRtK~ 750 (2062)
.|...+|||+||||+||++.|||+|+|||||+-|.+..+|..-|. ..+...+..||.+|+||||||+|+
T Consensus 522 ~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~-----------~~~e~~~~~L~~~L~P~~lRr~kk 590 (1373)
T KOG0384|consen 522 QFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFD-----------EETEEQVRKLQQILKPFLLRRLKK 590 (1373)
T ss_pred HhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhc-----------chhHHHHHHHHHHhhHHHHHHHHh
Confidence 999999999999999999999999999999999999999998772 235677899999999999999999
Q ss_pred hHhhcCCCceeEEEEecCCHHHHHHHHHHHHhHHHHHH-hhhcchhhHHHHHHHHHHHhCCCcccCCCCccccccccccc
Q 000139 751 DVEKQLPMKQEHVIYCRLSKRQRNLYEDFIASSETQAT-LASANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMSGID 829 (2062)
Q Consensus 751 DVekqLP~K~EhVV~c~LSkrQR~LYdd~is~~~t~~~-L~sgn~~silnvLmqLRKvCNHP~Lfe~r~i~S~f~~~~~~ 829 (2062)
||++.||+|.|.++.|.||..|+++|..++.+.-...+ -..|+..+++|++|.||||||||+||.+..-
T Consensus 591 dvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee---------- 660 (1373)
T KOG0384|consen 591 DVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEE---------- 660 (1373)
T ss_pred hhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHH----------
Confidence 99999999999999999999999999999876543322 2334458999999999999999999865200
Q ss_pred ccccccccccCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHhhhcccccccCCccccccccCCchH
Q 000139 830 SQLSSSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVGPFCTHRKRLNGTSI 909 (2062)
Q Consensus 830 ~~l~s~~~~~l~~~~~~~~dl~~l~ll~~~le~~~~~~e~~e~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~~~gt~~ 909 (2062)
.+
T Consensus 661 ------------------------------------------------------------------------------~~ 662 (1373)
T KOG0384|consen 661 ------------------------------------------------------------------------------KI 662 (1373)
T ss_pred ------------------------------------------------------------------------------HH
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhccchhhhhhccChHHH
Q 000139 910 FEKIRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLSPVER 989 (2062)
Q Consensus 910 ~e~l~~~l~eer~~~~~~~~~~~~~~n~~rc~~~p~y~~~L~~ll~~~~p~~~~~~~~~~~~~~~~ss~L~~~v~s~~er 989 (2062)
+...+. | + ....
T Consensus 663 ~~~~~~------------------------~------------------~--------------------------~d~~ 674 (1373)
T KOG0384|consen 663 LGDFRD------------------------K------------------M--------------------------RDEA 674 (1373)
T ss_pred HHhhhh------------------------c------------------c--------------------------hHHH
Confidence 000000 0 0 0000
Q ss_pred HHHhhhhhhhhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhcccccCCccccccccchHH
Q 000139 990 FQRMIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQFDCGKLQ 1069 (2062)
Q Consensus 990 l~~l~~lie~f~~~vp~~~ap~p~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~fPd~rLiq~dSGKLq 1069 (2062)
+.. +...||||-
T Consensus 675 ---L~~-----------------------------------------------------------------lI~sSGKlV 686 (1373)
T KOG0384|consen 675 ---LQA-----------------------------------------------------------------LIQSSGKLV 686 (1373)
T ss_pred ---HHH-----------------------------------------------------------------HHHhcCcEE
Confidence 000 112589999
Q ss_pred HHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhc-CCCceEEEEecccccccc
Q 000139 1070 ELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNT-NPKIFLFILSTRSGGVGI 1148 (2062)
Q Consensus 1070 ~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~-D~~IfVfLLSTrAGG~GL 1148 (2062)
.|++||.+|+..||||||||||++|||||+.||.++||+|-||||+++.+.||++|++||. ++.-|||||||||||+||
T Consensus 687 LLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGI 766 (1373)
T KOG0384|consen 687 LLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGI 766 (1373)
T ss_pred eHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999998 788999999999999999
Q ss_pred CcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000139 1149 NLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGY 1219 (2062)
Q Consensus 1149 NLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~qKr~L~~~vIq~g~f 1219 (2062)
||+.||||||||+||||+.|.|||.|||||||++.|.|||||+++||||-|+++|..|.-|+.+|||.+..
T Consensus 767 NLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvLD~aVIQ~m~t 837 (1373)
T KOG0384|consen 767 NLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVLDHAVIQRMDT 837 (1373)
T ss_pred cccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHHhhhHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998765
No 6
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=3.6e-98 Score=917.85 Aligned_cols=488 Identities=39% Similarity=0.668 Sum_probs=429.8
Q ss_pred ccCCCCCCCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHH
Q 000139 515 TKFPFLLKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFL 594 (2062)
Q Consensus 515 t~vP~lLk~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efk 594 (2062)
..+|..+...|++||++||.||+.+|.++.||||+||||||||||+|+||+.+.......+|.|||||+++|.||+.||.
T Consensus 196 ~~vPg~I~~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~qW~~E~~ 275 (923)
T KOG0387|consen 196 FKVPGFIWSKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIHQWMKEFQ 275 (923)
T ss_pred ccccHHHHHHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999876456699999999999999999999
Q ss_pred HHCCCCeEEEEeCChhhHHhh----hhcc------CCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhH
Q 000139 595 KWCPAFKILTYFGSAKERKFK----RQGW------LKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQ 664 (2062)
Q Consensus 595 kw~P~lkVl~y~Gs~kerk~~----r~gw------~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk 664 (2062)
+|+|.++|.+|||+....+.. -..| .....-+|+||||..++.....+..+.|+|||+||+|+|||++|+
T Consensus 276 ~w~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~ILDEGH~IrNpns~ 355 (923)
T KOG0387|consen 276 TWWPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDDLLGILWDYVILDEGHRIRNPNSK 355 (923)
T ss_pred HhCcceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCcccccccccEEEecCcccccCCccH
Confidence 999999999999987631100 0001 112345799999999999999999999999999999999999999
Q ss_pred HHHHHHcccCceEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCccc-----ccccccHHHHHHHHHh
Q 000139 665 RWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVE-----GQEKVNKEVVDRLHNV 739 (2062)
Q Consensus 665 ~~qaL~~L~a~~RLLLTGTPLQNsL~ELwSLL~FL~P~iF~s~~eFkewFsnPisg~~e-----g~~~~n~~~i~rLhkv 739 (2062)
.+.+|+.+++.+|++|||||+||+|.|||+|+.|+.|+.++++..|.+.|..||.-... -+..........|+.+
T Consensus 356 islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~l 435 (923)
T KOG0387|consen 356 ISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDL 435 (923)
T ss_pred HHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999952211 1122233455679999
Q ss_pred hhhhhhhhhhhhHhh-cCCCceeEEEEecCCHHHHHHHHHHHHhHHHHHHhhhcchhhHHHHHHHHHHHhCCCcccCCCC
Q 000139 740 LRPFILRRLKRDVEK-QLPMKQEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISVIMQLRKVCNHPDLFEGRP 818 (2062)
Q Consensus 740 LrpFmLRRtK~DVek-qLP~K~EhVV~c~LSkrQR~LYdd~is~~~t~~~L~sgn~~silnvLmqLRKvCNHP~Lfe~r~ 818 (2062)
++||||||+|.||.. .||.|.|+|++|+||+.||.+|+.|+........+.+.. .++..+.-||++||||+|+.+++
T Consensus 436 I~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~--~~l~Gi~iLrkICnHPdll~~~~ 513 (923)
T KOG0387|consen 436 ISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKR--NCLSGIDILRKICNHPDLLDRRD 513 (923)
T ss_pred hHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCc--cceechHHHHhhcCCcccccCcc
Confidence 999999999999999 999999999999999999999999999888877765543 23445567999999999986541
Q ss_pred cccccccccccccccccccccCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHhhhcccccccCCcc
Q 000139 819 IVSSFDMSGIDSQLSSSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVGPFC 898 (2062)
Q Consensus 819 i~S~f~~~~~~~~l~s~~~~~l~~~~~~~~dl~~l~ll~~~le~~~~~~e~~e~~~l~tp~~li~~~~~l~~~~~~~p~~ 898 (2062)
-...
T Consensus 514 ~~~~---------------------------------------------------------------------------- 517 (923)
T KOG0387|consen 514 EDEK---------------------------------------------------------------------------- 517 (923)
T ss_pred cccc----------------------------------------------------------------------------
Confidence 0000
Q ss_pred ccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhccchh
Q 000139 899 THRKRLNGTSIFEKIRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSK 978 (2062)
Q Consensus 899 ~~~~~~~gt~~~e~l~~~l~eer~~~~~~~~~~~~~~n~~rc~~~p~y~~~L~~ll~~~~p~~~~~~~~~~~~~~~~ss~ 978 (2062)
..
T Consensus 518 -------------------------------------------~~----------------------------------- 519 (923)
T KOG0387|consen 518 -------------------------------------------QG----------------------------------- 519 (923)
T ss_pred -------------------------------------------cC-----------------------------------
Confidence 00
Q ss_pred hhhhccChHHHHHHhhhhhhhhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhcccccCCc
Q 000139 979 LADIVLSPVERFQRMIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDR 1058 (2062)
Q Consensus 979 L~~~v~s~~erl~~l~~lie~f~~~vp~~~ap~p~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~fPd~ 1058 (2062)
||-
T Consensus 520 -----------------------------------------------------------------------------~D~ 522 (923)
T KOG0387|consen 520 -----------------------------------------------------------------------------PDY 522 (923)
T ss_pred -----------------------------------------------------------------------------CCc
Confidence 000
Q ss_pred cccccccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHH-HcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEE
Q 000139 1059 RLIQFDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFIS-LYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLF 1137 (2062)
Q Consensus 1059 rLiq~dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~-~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVf 1137 (2062)
...+-.|||+.+|..||..++..|+|||+|||...|||||+.||. ..||+|+|+||+|+...|+.+|++||.+..++||
T Consensus 523 ~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VF 602 (923)
T KOG0387|consen 523 EGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVF 602 (923)
T ss_pred CCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEE
Confidence 001235899999999999999999999999999999999999999 7999999999999999999999999999999999
Q ss_pred EEeccccccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 000139 1138 ILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSG 1217 (2062)
Q Consensus 1138 LLSTrAGG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~qKr~L~~~vIq~g 1217 (2062)
||+|++||+|+|||+||+||+|||+|||+.|.||.+|+|||||+|+|.||||++.+||||+||.+|..|..|.+.++.+
T Consensus 603 LLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~Kq~Ltn~il~~- 681 (923)
T KOG0387|consen 603 LLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNRILKN- 681 (923)
T ss_pred EEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHHHHHHHHHhcC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999964
Q ss_pred CCCccccccCChhhhhcCC
Q 000139 1218 GYNTEFFKKLDPMELFSGH 1236 (2062)
Q Consensus 1218 ~ft~~~fk~~di~eLF~~~ 1236 (2062)
.-...||+..++.+||++.
T Consensus 682 p~q~RfF~~~dl~dLFsl~ 700 (923)
T KOG0387|consen 682 PEQRRFFKGNDLHDLFSLK 700 (923)
T ss_pred HHHhhhcccccHHHHhCCC
Confidence 4567899999999999864
No 7
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=8.8e-97 Score=920.50 Aligned_cols=517 Identities=43% Similarity=0.742 Sum_probs=446.3
Q ss_pred cccCCCCC-CCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHH
Q 000139 514 RTKFPFLL-KFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETE 592 (2062)
Q Consensus 514 kt~vP~lL-k~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~E 592 (2062)
.+..|+.| .|+|++||+.||.||+++|.+++|||||||||||||||+|++|++|+..++..||+|||||.+++.||..|
T Consensus 383 v~~Qps~l~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW~~E 462 (1157)
T KOG0386|consen 383 VAKQPSSLQGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNWSSE 462 (1157)
T ss_pred cccCcchhcCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCchhh
Confidence 35678877 58999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHH-c
Q 000139 593 FLKWCPAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLL-N 671 (2062)
Q Consensus 593 fkkw~P~lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~-~ 671 (2062)
|.+|.|.+..+.|.|+...|+........ ++|+|++|||+.+.++...|.++.|.|+||||+|+|||..+++...+. .
T Consensus 463 f~kWaPSv~~i~YkGtp~~R~~l~~qir~-gKFnVLlTtyEyiikdk~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~t~ 541 (1157)
T KOG0386|consen 463 FPKWAPSVQKIQYKGTPQQRSGLTKQQRH-GKFNVLLTTYEYIIKDKALLSKISWKYMIIDEGHRMKNAICKLTDTLNTH 541 (1157)
T ss_pred ccccccceeeeeeeCCHHHHhhHHHHHhc-ccceeeeeeHHHhcCCHHHHhccCCcceeecccccccchhhHHHHHhhcc
Confidence 99999999999999999998876654333 899999999999999999999999999999999999999999999998 6
Q ss_pred ccCceEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCccc---ccccccHHHHHHHHHhhhhhhhhhh
Q 000139 672 FNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVE---GQEKVNKEVVDRLHNVLRPFILRRL 748 (2062)
Q Consensus 672 L~a~~RLLLTGTPLQNsL~ELwSLL~FL~P~iF~s~~eFkewFsnPisg~~e---g~~~~n~~~i~rLhkvLrpFmLRRt 748 (2062)
+.+.+||||||||+||+|.|||+||+||.|++|.+-..|..||..|+....+ -.....--+|.|||+|||||+|||+
T Consensus 542 y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRl 621 (1157)
T KOG0386|consen 542 YRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRL 621 (1157)
T ss_pred ccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhh
Confidence 7999999999999999999999999999999999999999999999964332 1223344579999999999999999
Q ss_pred hhhHhhcCCCceeEEEEecCCHHHHHHHHHHHHhHHHH--HHhhhcchhhHHHHHHHHHHHhCCCcccCCCCcccccccc
Q 000139 749 KRDVEKQLPMKQEHVIYCRLSKRQRNLYEDFIASSETQ--ATLASANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMS 826 (2062)
Q Consensus 749 K~DVekqLP~K~EhVV~c~LSkrQR~LYdd~is~~~t~--~~L~sgn~~silnvLmqLRKvCNHP~Lfe~r~i~S~f~~~ 826 (2062)
|++|+++||.|++.||+|.||..|+.+|..+.....-. .....+.+.+++|.+|+|||+||||++|+...
T Consensus 622 KkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve-------- 693 (1157)
T KOG0386|consen 622 KKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVE-------- 693 (1157)
T ss_pred hHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhc--------
Confidence 99999999999999999999999999999775432110 11234567789999999999999999984210
Q ss_pred cccccccccccccCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHhhhcccccccCCccccccccCC
Q 000139 827 GIDSQLSSSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVGPFCTHRKRLNG 906 (2062)
Q Consensus 827 ~~~~~l~s~~~~~l~~~~~~~~dl~~l~ll~~~le~~~~~~e~~e~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~~~g 906 (2062)
...+
T Consensus 694 -----------------------------------~~~~----------------------------------------- 697 (1157)
T KOG0386|consen 694 -----------------------------------NSYT----------------------------------------- 697 (1157)
T ss_pred -----------------------------------cccc-----------------------------------------
Confidence 0000
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhccchhhhhhccCh
Q 000139 907 TSIFEKIRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLSP 986 (2062)
Q Consensus 907 t~~~e~l~~~l~eer~~~~~~~~~~~~~~n~~rc~~~p~y~~~L~~ll~~~~p~~~~~~~~~~~~~~~~ss~L~~~v~s~ 986 (2062)
+.|+.
T Consensus 698 -------------------------------------~~~~~-------------------------------------- 702 (1157)
T KOG0386|consen 698 -------------------------------------LHYDI-------------------------------------- 702 (1157)
T ss_pred -------------------------------------cccCh--------------------------------------
Confidence 00000
Q ss_pred HHHHHHhhhhhhhhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhcccccCCccccccccc
Q 000139 987 VERFQRMIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQFDCG 1066 (2062)
Q Consensus 987 ~erl~~l~~lie~f~~~vp~~~ap~p~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~fPd~rLiq~dSG 1066 (2062)
..+.--||
T Consensus 703 ------------------------------------------------------------------------~dL~R~sG 710 (1157)
T KOG0386|consen 703 ------------------------------------------------------------------------KDLVRVSG 710 (1157)
T ss_pred ------------------------------------------------------------------------hHHHHhcc
Confidence 00011389
Q ss_pred hHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhc-CCCceEEEEeccccc
Q 000139 1067 KLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNT-NPKIFLFILSTRSGG 1145 (2062)
Q Consensus 1067 KLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~-D~~IfVfLLSTrAGG 1145 (2062)
|+..|+++|.+|++.|||||+|+|||++++||+.||.+.+|.|+||||+|+.++|..+++.||. |..+||||+|||+||
T Consensus 711 KfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstragg 790 (1157)
T KOG0386|consen 711 KFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGG 790 (1157)
T ss_pred HHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998 889999999999999
Q ss_pred cccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCCCCccccc
Q 000139 1146 VGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNTEFFK 1225 (2062)
Q Consensus 1146 ~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~qKr~L~~~vIq~g~ft~~~fk 1225 (2062)
+|+||+.|||||+||++|||.+|.||++|+|||||+|+|.|+||++-++|||+|+..|.+|+.++..||+.|.|....-.
T Consensus 791 lglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~a~~Kl~~d~kviqag~fdn~st~ 870 (1157)
T KOG0386|consen 791 LGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAEAFYKLDVDGKVIQAGKFDNKSTA 870 (1157)
T ss_pred cccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHHHHHhcCchHhhhhcccccCCCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988654211
Q ss_pred cCChhhhhcCCCCCchhhhhHHHhhhcCC----CccCChhhHHHHHHhhhchHHH
Q 000139 1226 KLDPMELFSGHRTLPMKTMQKEKAINNGN----EVSLSNADVEAALKCVEDEADY 1276 (2062)
Q Consensus 1226 ~~di~eLF~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~e~al~~aEde~d~ 1276 (2062)
. -++.| .+..+..+. +....++.|...|++.|||.++
T Consensus 871 ~--eR~~~------------Le~~l~~~~~~~~~~v~~~~~ln~~larseeE~~~ 911 (1157)
T KOG0386|consen 871 E--EREMF------------LEQLLEMEGDEEEEEVPDDEVLNSMLARSEEEFEL 911 (1157)
T ss_pred H--HHHHH------------HHHHHhCCCccccccCCcHHHHHHHHhcchHHHHH
Confidence 0 11111 111111110 2344566788999999988666
No 8
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=4.2e-93 Score=937.88 Aligned_cols=512 Identities=43% Similarity=0.758 Sum_probs=445.3
Q ss_pred ccCCCCCCCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHH
Q 000139 515 TKFPFLLKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFL 594 (2062)
Q Consensus 515 t~vP~lLk~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efk 594 (2062)
+..|..++++|||||+.||+||+.++.++.|||||||||||||+|+|++|.++....+..||+|||||.+++.||..||.
T Consensus 160 ~~qP~~i~~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL~nW~~Ei~ 239 (1033)
T PLN03142 160 LVQPSCIKGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMNEIR 239 (1033)
T ss_pred ccCChHhccchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHHHHHH
Confidence 45688899999999999999999999999999999999999999999999999877888999999999999999999999
Q ss_pred HHCCCCeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHcccC
Q 000139 595 KWCPAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNS 674 (2062)
Q Consensus 595 kw~P~lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L~a 674 (2062)
+|||.++++.|+|+...+...+..+...+.|+||||||+++.++...|..+.|++|||||||+|||..|+++++++.+++
T Consensus 240 kw~p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L~k~~W~~VIvDEAHrIKN~~Sklskalr~L~a 319 (1033)
T PLN03142 240 RFCPVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKNENSLLSKTMRLFST 319 (1033)
T ss_pred HHCCCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHhccCCCCEEEEcCccccCCHHHHHHHHHHHhhc
Confidence 99999999999999988877666666667899999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCcccccccccHHHHHHHHHhhhhhhhhhhhhhHhh
Q 000139 675 KRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRRLKRDVEK 754 (2062)
Q Consensus 675 ~~RLLLTGTPLQNsL~ELwSLL~FL~P~iF~s~~eFkewFsnPisg~~eg~~~~n~~~i~rLhkvLrpFmLRRtK~DVek 754 (2062)
.+||||||||+||++.|||+||+||+|++|++...|..||..+. .......+.+||.+|+||||||+|.+|.+
T Consensus 320 ~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~-------~~~~~e~i~~L~~~L~pf~LRR~KsdV~~ 392 (1033)
T PLN03142 320 NYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISG-------ENDQQEVVQQLHKVLRPFLLRRLKSDVEK 392 (1033)
T ss_pred CcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHcccc-------ccchHHHHHHHHHHhhHHHhhhhHHHHhh
Confidence 99999999999999999999999999999999999999998632 12345678899999999999999999999
Q ss_pred cCCCceeEEEEecCCHHHHHHHHHHHHhHHHHHHhhhcchhhHHHHHHHHHHHhCCCcccCCCCcccccccccccccccc
Q 000139 755 QLPMKQEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMSGIDSQLSS 834 (2062)
Q Consensus 755 qLP~K~EhVV~c~LSkrQR~LYdd~is~~~t~~~L~sgn~~silnvLmqLRKvCNHP~Lfe~r~i~S~f~~~~~~~~l~s 834 (2062)
.||++.+++|+|.||+.|+.+|..++...... ...++....+++++|+||++||||+||.+...
T Consensus 393 ~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~-l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep--------------- 456 (1033)
T PLN03142 393 GLPPKKETILKVGMSQMQKQYYKALLQKDLDV-VNAGGERKRLLNIAMQLRKCCNHPYLFQGAEP--------------- 456 (1033)
T ss_pred hCCCceeEEEeeCCCHHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHhCCHHhhhcccc---------------
Confidence 99999999999999999999999988654321 12234556789999999999999998643100
Q ss_pred cccccCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHhhhcccccccCCccccccccCCchHHHHHH
Q 000139 835 SVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVGPFCTHRKRLNGTSIFEKIR 914 (2062)
Q Consensus 835 ~~~~~l~~~~~~~~dl~~l~ll~~~le~~~~~~e~~e~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~~~gt~~~e~l~ 914 (2062)
++
T Consensus 457 --------~~---------------------------------------------------------------------- 458 (1033)
T PLN03142 457 --------GP---------------------------------------------------------------------- 458 (1033)
T ss_pred --------cC----------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhccchhhhhhccChHHHHHHhh
Q 000139 915 KALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLSPVERFQRMI 994 (2062)
Q Consensus 915 ~~l~eer~~~~~~~~~~~~~~n~~rc~~~p~y~~~L~~ll~~~~p~~~~~~~~~~~~~~~~ss~L~~~v~s~~erl~~l~ 994 (2062)
.|..
T Consensus 459 ------------------------------~~~~---------------------------------------------- 462 (1033)
T PLN03142 459 ------------------------------PYTT---------------------------------------------- 462 (1033)
T ss_pred ------------------------------cccc----------------------------------------------
Confidence 0000
Q ss_pred hhhhhhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhcccccCCccccccccchHHHHHHH
Q 000139 995 GLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQFDCGKLQELAIL 1074 (2062)
Q Consensus 995 ~lie~f~~~vp~~~ap~p~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~fPd~rLiq~dSGKLq~L~~L 1074 (2062)
. ..+...|||+..|..|
T Consensus 463 --------------------------------------------------------------~-e~lie~SgKl~lLdkL 479 (1033)
T PLN03142 463 --------------------------------------------------------------G-EHLVENSGKMVLLDKL 479 (1033)
T ss_pred --------------------------------------------------------------h-hHHhhhhhHHHHHHHH
Confidence 0 0001247999999999
Q ss_pred HHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcC-CCceEEEEeccccccccCcccC
Q 000139 1075 LRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTN-PKIFLFILSTRSGGVGINLVGA 1153 (2062)
Q Consensus 1075 LrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D-~~IfVfLLSTrAGG~GLNLT~A 1153 (2062)
|.+++..|+||||||||+.||++|+.+|..+|+.|+||||+|+..+|+.++++||.+ +..+||||||++||+|||||.|
T Consensus 480 L~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~A 559 (1033)
T PLN03142 480 LPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATA 559 (1033)
T ss_pred HHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhC
Confidence 999999999999999999999999999999999999999999999999999999974 5678999999999999999999
Q ss_pred CEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCCCCcc-ccccCChhhh
Q 000139 1154 DTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNTE-FFKKLDPMEL 1232 (2062)
Q Consensus 1154 DtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~qKr~L~~~vIq~g~ft~~-~fk~~di~eL 1232 (2062)
|+|||||+||||+.+.||+||||||||+++|+|||||+.+||||+|++++..|..|+..||++|.+... .+...++.+|
T Consensus 560 d~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl~Ld~~Vi~~g~~~~~~~~~~~eL~~l 639 (1033)
T PLN03142 560 DIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQM 639 (1033)
T ss_pred CEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHhcCcccccccCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999876543 2333344455
Q ss_pred hcCCCCCchhhhhHHHhhhcCCCccCChhhHHHHHHhhhchHHH
Q 000139 1233 FSGHRTLPMKTMQKEKAINNGNEVSLSNADVEAALKCVEDEADY 1276 (2062)
Q Consensus 1233 F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~aEde~d~ 1276 (2062)
|.-. .+. +.......+++.+|+..|++.|+.+.-
T Consensus 640 l~~g---------a~~-~f~~~~~~~~~~did~il~~~~~~~~~ 673 (1033)
T PLN03142 640 VRYG---------AEM-VFSSKDSTITDEDIDRIIAKGEEATAE 673 (1033)
T ss_pred HHhC---------hHH-hhhccCCCCCHHHHHHHHHhcHHHHHH
Confidence 5311 111 112223467899999999999876533
No 9
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=5.1e-89 Score=857.68 Aligned_cols=495 Identities=37% Similarity=0.646 Sum_probs=421.9
Q ss_pred ccCCCCCCCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhc------CCCCcEEEEecCCcHHH
Q 000139 515 TKFPFLLKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEK------GIWGPHLIVVPTSVMLN 588 (2062)
Q Consensus 515 t~vP~lLk~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~------g~~Gp~LIVvPtSLL~Q 588 (2062)
..+|-.++..||.||++||+||.-++..++.|||||+||||||+|+|++++.-.+.+ -..-|.|||||.++..+
T Consensus 966 y~Ip~pI~a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsTLtGH 1045 (1549)
T KOG0392|consen 966 YKIPVPISAKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPSTLTGH 1045 (1549)
T ss_pred cccccchhHHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCchhhhH
Confidence 567778899999999999999999999999999999999999999999998765543 13458999999999999
Q ss_pred HHHHHHHHCCCCeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHH
Q 000139 589 WETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQT 668 (2062)
Q Consensus 589 W~~Efkkw~P~lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qa 668 (2062)
|+.|+.+|+|-++|+.|.|....|...|... ...+||||||+.+++|...|..+.|.|+|+||+|-|||.+++.|++
T Consensus 1046 W~~E~~kf~pfL~v~~yvg~p~~r~~lR~q~---~~~~iiVtSYDv~RnD~d~l~~~~wNYcVLDEGHVikN~ktkl~ka 1122 (1549)
T KOG0392|consen 1046 WKSEVKKFFPFLKVLQYVGPPAERRELRDQY---KNANIIVTSYDVVRNDVDYLIKIDWNYCVLDEGHVIKNSKTKLTKA 1122 (1549)
T ss_pred HHHHHHHhcchhhhhhhcCChHHHHHHHhhc---cccceEEeeHHHHHHHHHHHHhcccceEEecCcceecchHHHHHHH
Confidence 9999999999999999999999998877533 4568999999999999999999999999999999999999999999
Q ss_pred HHcccCceEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCccc-----ccccccHHHHHHHHHhhhhh
Q 000139 669 LLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVE-----GQEKVNKEVVDRLHNVLRPF 743 (2062)
Q Consensus 669 L~~L~a~~RLLLTGTPLQNsL~ELwSLL~FL~P~iF~s~~eFkewFsnPisg~~e-----g~~~~n~~~i~rLhkvLrpF 743 (2062)
+..|++.+|+.|||||+|||+.|||||++||||+.+++-+.|.+.|..||..... ...+.+-..+..||+..=||
T Consensus 1123 vkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF 1202 (1549)
T KOG0392|consen 1123 VKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPF 1202 (1549)
T ss_pred HHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999954332 22334445688899999999
Q ss_pred hhhhhhhhHhhcCCCceeEEEEecCCHHHHHHHHHHHHhHHHH------HHhhhcc--hhhHHHHHHHHHHHhCCCcccC
Q 000139 744 ILRRLKRDVEKQLPMKQEHVIYCRLSKRQRNLYEDFIASSETQ------ATLASAN--FFGMISVIMQLRKVCNHPDLFE 815 (2062)
Q Consensus 744 mLRRtK~DVekqLP~K~EhVV~c~LSkrQR~LYdd~is~~~t~------~~L~sgn--~~silnvLmqLRKvCNHP~Lfe 815 (2062)
||||+|.||.+.||||...-.+|.||+.|+.+|++|..+.... .+..+.+ ..+++..|-.|||.||||.|+-
T Consensus 1203 ~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvl 1282 (1549)
T KOG0392|consen 1203 LLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVL 1282 (1549)
T ss_pred HHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceee
Confidence 9999999999999999999999999999999999998772211 1112222 5678899999999999999863
Q ss_pred CCCcccccccccccccccccccccCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHhhhcccccccC
Q 000139 816 GRPIVSSFDMSGIDSQLSSSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVG 895 (2062)
Q Consensus 816 ~r~i~S~f~~~~~~~~l~s~~~~~l~~~~~~~~dl~~l~ll~~~le~~~~~~e~~e~~~l~tp~~li~~~~~l~~~~~~~ 895 (2062)
.+. . |.
T Consensus 1283 t~~------------------------h----------------------------------p~---------------- 1288 (1549)
T KOG0392|consen 1283 TPV------------------------H----------------------------------PD---------------- 1288 (1549)
T ss_pred CCC------------------------c----------------------------------ch----------------
Confidence 210 0 00
Q ss_pred CccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhcc
Q 000139 896 PFCTHRKRLNGTSIFEKIRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLY 975 (2062)
Q Consensus 896 p~~~~~~~~~gt~~~e~l~~~l~eer~~~~~~~~~~~~~~n~~rc~~~p~y~~~L~~ll~~~~p~~~~~~~~~~~~~~~~ 975 (2062)
+..+.+.+ ...
T Consensus 1289 --------------la~i~~~l-------------------------------------------------------~~~ 1299 (1549)
T KOG0392|consen 1289 --------------LAAIVSHL-------------------------------------------------------AHF 1299 (1549)
T ss_pred --------------HHHHHHHH-------------------------------------------------------HHh
Confidence 00000000 000
Q ss_pred chhhhhhccChHHHHHHhhhhhhhhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhccccc
Q 000139 976 SSKLADIVLSPVERFQRMIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYF 1055 (2062)
Q Consensus 976 ss~L~~~v~s~~erl~~l~~lie~f~~~vp~~~ap~p~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~f 1055 (2062)
.+.|.+ +
T Consensus 1300 ~~~LHd-----------------------------------------------------------------i-------- 1306 (1549)
T KOG0392|consen 1300 NSSLHD-----------------------------------------------------------------I-------- 1306 (1549)
T ss_pred hhhHHH-----------------------------------------------------------------h--------
Confidence 000000 0
Q ss_pred CCccccccccchHHHHHHHHHHhhh--------------CCCeEEEEeCchHHHHHHHHHHHH---cCCcEEEecCCCCH
Q 000139 1056 PDRRLIQFDCGKLQELAILLRKLKS--------------DGHRALIFTQMTKMLDILEEFISL---YGYTYMRLDGSTQP 1118 (2062)
Q Consensus 1056 Pd~rLiq~dSGKLq~L~~LLrkLks--------------~GhKVLIFSQ~t~mLDILe~~L~~---~Gi~y~RLDGsTs~ 1118 (2062)
..++|+.+|..||..+-- .+||||||+|+..|||+++.-|-. ..++|+||||+.++
T Consensus 1307 -------~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp 1379 (1549)
T KOG0392|consen 1307 -------QHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPP 1379 (1549)
T ss_pred -------hhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCc
Confidence 125677777777766632 479999999999999999998843 36789999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHH
Q 000139 1119 EERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEEN 1198 (2062)
Q Consensus 1119 eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~ 1198 (2062)
.+|++++.+||+||.|.|+||+|.+||+|||||||||||||+-||||..|.|||||+|||||+|-|.|||||+.||+||+
T Consensus 1380 ~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGTLEEK 1459 (1549)
T KOG0392|consen 1380 GDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEK 1459 (1549)
T ss_pred HHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCccccccCChhhhhcC
Q 000139 1199 ILKKANQKRALDDLVIQSGGYNTEFFKKLDPMELFSG 1235 (2062)
Q Consensus 1199 Ilkka~qKr~L~~~vIq~g~ft~~~fk~~di~eLF~~ 1235 (2062)
|+..|..|..+.+.||...+-....+..-.+.+||+.
T Consensus 1460 VMgLQkFKmnvAntvInqqNasl~tM~TdqLLdlF~~ 1496 (1549)
T KOG0392|consen 1460 VMGLQKFKMNVANTVINQQNASLETMDTDQLLDLFTV 1496 (1549)
T ss_pred HhhHHHHhhHHHHHHHhcccccccccCHHHHHHHhcc
Confidence 9999999999999999988877777777778899974
No 10
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=1.4e-76 Score=692.67 Aligned_cols=556 Identities=29% Similarity=0.470 Sum_probs=414.9
Q ss_pred ccCCCCCCCCCcHHHHHHHHHHHHHhh-cCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHH
Q 000139 515 TKFPFLLKFPLREYQHIGLDWLVTMYE-KRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEF 593 (2062)
Q Consensus 515 t~vP~lLk~~LRpYQ~~GL~WLv~l~~-~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Ef 593 (2062)
..+|..|-.+|.|||++||.|+..... .-.|||||||||+|||||+|+|++.- ....|+|||||+..+.||.+||
T Consensus 175 aeqP~dlii~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae----~~ra~tLVvaP~VAlmQW~nEI 250 (791)
T KOG1002|consen 175 AEQPDDLIIPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAE----VDRAPTLVVAPTVALMQWKNEI 250 (791)
T ss_pred ccCcccceecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhc----cccCCeeEEccHHHHHHHHHHH
Confidence 457888889999999999999998766 56799999999999999999998762 3346899999999999999999
Q ss_pred HHHCC-CCeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhc-----------------hhhhhccCeeEEEEcCc
Q 000139 594 LKWCP-AFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQD-----------------SKVFKRKKWKYLILDEA 655 (2062)
Q Consensus 594 kkw~P-~lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d-----------------~~~L~r~~W~lVILDEA 655 (2062)
.+++. .+++++|||..+....+. ..+|+||+|||.++... ...|..++|.+||||||
T Consensus 251 ~~~T~gslkv~~YhG~~R~~nike-----l~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEA 325 (791)
T KOG1002|consen 251 ERHTSGSLKVYIYHGAKRDKNIKE-----LMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEA 325 (791)
T ss_pred HHhccCceEEEEEecccccCCHHH-----hhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhh
Confidence 99985 589999999887654432 35899999999887543 23467789999999999
Q ss_pred cccCChhhHHHHHHHcccCceEEEEeccCCCCChHHHHHHHHHhCCCCCCChH---------------------------
Q 000139 656 HLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQ--------------------------- 708 (2062)
Q Consensus 656 H~IKN~~Sk~~qaL~~L~a~~RLLLTGTPLQNsL~ELwSLL~FL~P~iF~s~~--------------------------- 708 (2062)
|+||+..|...++++.|.+.+||+|||||+||.+.|||||++||..++|.-+-
T Consensus 326 H~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftdr~~c~~c~h~~m 405 (791)
T KOG1002|consen 326 HNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTDRMHCDHCSHNIM 405 (791)
T ss_pred cccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceeecccccCCcccchhh
Confidence 99999999999999999999999999999999999999999999887763210
Q ss_pred ----HHHHHhcCCCCCcccccccccHHHHHHHHHhhhhhhhhhhhhhHhh--cCCCceeEEEEecCCHHHHHHHHHHHHh
Q 000139 709 ----EFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRRLKRDVEK--QLPMKQEHVIYCRLSKRQRNLYEDFIAS 782 (2062)
Q Consensus 709 ----eFkewFsnPisg~~eg~~~~n~~~i~rLhkvLrpFmLRRtK~DVek--qLP~K~EhVV~c~LSkrQR~LYdd~is~ 782 (2062)
.|......||.. .|....+.......|.+|..+||||+|-.-.+ .|||+...+..--|+..+..+|+.+...
T Consensus 406 ~h~~~~n~~mlk~Iqk--fG~eGpGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~eE~D~YeSLY~d 483 (791)
T KOG1002|consen 406 QHTCFFNHFMLKPIQK--FGVEGPGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEEEKDLYESLYKD 483 (791)
T ss_pred hhhhhhcccccccchh--hcccCchHHHHHHHHHHHHHHHHHHhhcccccccCCCccceeeehhhhhhHHHHHHHHHHHh
Confidence 111111223321 12233445566688999999999999965433 6999998888888999999999988765
Q ss_pred HHH------HHHhhhcchhhHHHHHHHHHHHhCCCcccCCCCcccccccccccccccccccccCCCCCCcchhhcccccc
Q 000139 783 SET------QATLASANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMSGIDSQLSSSVCSMLSPSPLSTADLKGLGLL 856 (2062)
Q Consensus 783 ~~t------~~~L~sgn~~silnvLmqLRKvCNHP~Lfe~r~i~S~f~~~~~~~~l~s~~~~~l~~~~~~~~dl~~l~ll 856 (2062)
+.. .++....||.+++.++.+|||+..||+|+.-. ....+...
T Consensus 484 SkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S-----------------~~~n~~~e-------------- 532 (791)
T KOG1002|consen 484 SKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYS-----------------ANANLPDE-------------- 532 (791)
T ss_pred hHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeeh-----------------hhcCCCcc--------------
Confidence 443 24445679999999999999999999996210 00000000
Q ss_pred ccccccccCccchhhhhhhcCchhHHHHhhhcccccccCCccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 000139 857 FTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVGPFCTHRKRLNGTSIFEKIRKALLEERRREAQDRASSVAWWN 936 (2062)
Q Consensus 857 ~~~le~~~~~~e~~e~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~~~gt~~~e~l~~~l~eer~~~~~~~~~~~~~~n 936 (2062)
|. +
T Consensus 533 ---------------------------------nk--------------------------------------------~ 535 (791)
T KOG1002|consen 533 ---------------------------------NK--------------------------------------------G 535 (791)
T ss_pred ---------------------------------cc--------------------------------------------C
Confidence 00 0
Q ss_pred hcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhccchhhhhhccChHHHHHHhhhhhhhhhhcccccCCCCCcccc
Q 000139 937 SLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLSPVERFQRMIGLVESFMFAIPAARAPAPVCWC 1016 (2062)
Q Consensus 937 ~~rc~~~p~y~~~L~~ll~~~~p~~~~~~~~~~~~~~~~ss~L~~~v~s~~erl~~l~~lie~f~~~vp~~~ap~p~~~~ 1016 (2062)
...|.-+.....+.. ...|.|.+|..|.. ..++.|+.. -...||.|+.
T Consensus 536 ~~~C~lc~d~aed~i-~s~ChH~FCrlCi~----------------------------eyv~~f~~~---~nvtCP~C~i 583 (791)
T KOG1002|consen 536 EVECGLCHDPAEDYI-ESSCHHKFCRLCIK----------------------------EYVESFMEN---NNVTCPVCHI 583 (791)
T ss_pred ceeecccCChhhhhH-hhhhhHHHHHHHHH----------------------------HHHHhhhcc---cCCCCccccc
Confidence 001111100000000 11234555554421 112222211 1134555543
Q ss_pred CCCCCccccccchhhhhccccCCCCCCchhhhhhcccccCCccccccccchHHHHHHHHHHhhhCC--CeEEEEeCchHH
Q 000139 1017 SKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSDG--HRALIFTQMTKM 1094 (2062)
Q Consensus 1017 ~~~~~~~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~fPd~rLiq~dSGKLq~L~~LLrkLks~G--hKVLIFSQ~t~m 1094 (2062)
.-+... ..+.... -.+..++....-.++...+ +..|.|+.+|.+-|..+.+.+ -|.|||||||.|
T Consensus 584 ~LsiDl--se~alek-------~~l~~Fk~sSIlnRinm~~----~qsSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTSm 650 (791)
T KOG1002|consen 584 GLSIDL--SEPALEK-------TDLKGFKASSILNRINMDD----WQSSTKIEALVEELYFLRERDRTAKSIVFSQFTSM 650 (791)
T ss_pred cccccc--cchhhhh-------cchhhhhhHHHhhhcchhh----hcchhHHHHHHHHHHHHHHcccchhhhhHHHHHHH
Confidence 322110 0010000 0011112222212222222 346899999999999998765 589999999999
Q ss_pred HHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEEEecCCCChhhHHHHHHh
Q 000139 1095 LDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDR 1174 (2062)
Q Consensus 1095 LDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIfyD~dWNPa~d~QA~gR 1174 (2062)
||+|+-.|...|+.++.|+|+|++..|...++.|.+|++|+|||+|.++||+.||||.|++|+++||||||+.+-||+||
T Consensus 651 LDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DR 730 (791)
T KOG1002|consen 651 LDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDR 730 (791)
T ss_pred HHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecccccHHHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCChhhhhc
Q 000139 1175 CHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNTEFFKKLDPMELFS 1234 (2062)
Q Consensus 1175 ahRIGQTRdV~VYRLIse~TIEE~Ilkka~qKr~L~~~vIq~g~ft~~~fk~~di~eLF~ 1234 (2062)
+|||||.|||.|.||+.++||||+|+..|..|..+++..|++..-.-..++..|++-||+
T Consensus 731 iHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~qde~Ai~kLt~eDmqfLF~ 790 (791)
T KOG1002|consen 731 IHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQDEEAISKLTEEDMQFLFN 790 (791)
T ss_pred HHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCCcHHHHHhcCHHHHHHHhc
Confidence 999999999999999999999999999999999999999976654444555566666664
No 11
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=1.3e-74 Score=732.64 Aligned_cols=497 Identities=33% Similarity=0.516 Sum_probs=404.5
Q ss_pred cCCCCCCCCCcHHHHHHHHHHHHHhh------cCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCc----EEEEecCCc
Q 000139 516 KFPFLLKFPLREYQHIGLDWLVTMYE------KRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGP----HLIVVPTSV 585 (2062)
Q Consensus 516 ~vP~lLk~~LRpYQ~~GL~WLv~l~~------~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp----~LIVvPtSL 585 (2062)
-+-++++..|||||++|+.||+.... ...|||+||+||+|||+|+|+||+.+.+..+.++| .|||||++|
T Consensus 230 ~~dP~l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~sL 309 (776)
T KOG0390|consen 230 VIDPLLKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSSL 309 (776)
T ss_pred EecccHhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHHH
Confidence 34456788899999999999997653 34588999999999999999999999998777544 499999999
Q ss_pred HHHHHHHHHHHCC--CCeEEEEeCChhhHHhhhhccC----CCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccC
Q 000139 586 MLNWETEFLKWCP--AFKILTYFGSAKERKFKRQGWL----KPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIK 659 (2062)
Q Consensus 586 L~QW~~Efkkw~P--~lkVl~y~Gs~kerk~~r~gw~----k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IK 659 (2062)
+.||..||.+|.. .+..+.++|..+..-.....|. ..-.+-|+|.||+++..+...+....+++|||||+|++|
T Consensus 310 v~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDEGHrlk 389 (776)
T KOG0390|consen 310 VNNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRKILLIRPGLLVCDEGHRLK 389 (776)
T ss_pred HHHHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECCCCCcc
Confidence 9999999999986 5788888887775111111121 223567999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHcccCceEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCccccc----ccccHHHHHH
Q 000139 660 NWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQ----EKVNKEVVDR 735 (2062)
Q Consensus 660 N~~Sk~~qaL~~L~a~~RLLLTGTPLQNsL~ELwSLL~FL~P~iF~s~~eFkewFsnPisg~~eg~----~~~n~~~i~r 735 (2062)
|..|.++++|..+++++|++|||||+||++.|++++++|..|+++++...|+..|..|+....... .....+.++.
T Consensus 390 N~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~e 469 (776)
T KOG0390|consen 390 NSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQE 469 (776)
T ss_pred chhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999885422211 0111445888
Q ss_pred HHHhhhhhhhhhhhhhHhhcCCCceeEEEEecCCHHHHHHHHHHHHhHHHHHHhhhcchhhHHHHHHHHHHHhCCCcccC
Q 000139 736 LHNVLRPFILRRLKRDVEKQLPMKQEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISVIMQLRKVCNHPDLFE 815 (2062)
Q Consensus 736 LhkvLrpFmLRRtK~DVekqLP~K~EhVV~c~LSkrQR~LYdd~is~~~t~~~L~sgn~~silnvLmqLRKvCNHP~Lfe 815 (2062)
|..+...|++||+-....+.||+++++||.|.+|+.|+.+|..++... ....+... .+..+..|+++||||.|+.
T Consensus 470 L~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~-~~~~~~~~----~l~~~~~L~k~cnhP~L~~ 544 (776)
T KOG0390|consen 470 LRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSM-KMRTLKGY----ALELITKLKKLCNHPSLLL 544 (776)
T ss_pred HHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHH-Hhhhhhcc----hhhHHHHHHHHhcCHHhhc
Confidence 999999999999999999999999999999999999999999998764 33333322 5677889999999999852
Q ss_pred CCCcccccccccccccccccccccCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHhhhcccccccC
Q 000139 816 GRPIVSSFDMSGIDSQLSSSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVG 895 (2062)
Q Consensus 816 ~r~i~S~f~~~~~~~~l~s~~~~~l~~~~~~~~dl~~l~ll~~~le~~~~~~e~~e~~~l~tp~~li~~~~~l~~~~~~~ 895 (2062)
...... ..
T Consensus 545 ~~~~~~--------------------~e---------------------------------------------------- 552 (776)
T KOG0390|consen 545 LCEKTE--------------------KE---------------------------------------------------- 552 (776)
T ss_pred cccccc--------------------cc----------------------------------------------------
Confidence 100000 00
Q ss_pred CccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhcc
Q 000139 896 PFCTHRKRLNGTSIFEKIRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLY 975 (2062)
Q Consensus 896 p~~~~~~~~~gt~~~e~l~~~l~eer~~~~~~~~~~~~~~n~~rc~~~p~y~~~L~~ll~~~~p~~~~~~~~~~~~~~~~ 975 (2062)
..+ .+|.. ...
T Consensus 553 ------------------------------------------------~~~----------~~~~~-----------~~~ 563 (776)
T KOG0390|consen 553 ------------------------------------------------KAF----------KNPAL-----------LLD 563 (776)
T ss_pred ------------------------------------------------ccc----------cChHh-----------hhc
Confidence 000 00000 000
Q ss_pred chhhhhhccChHHHHHHhhhhhhhhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhccccc
Q 000139 976 SSKLADIVLSPVERFQRMIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYF 1055 (2062)
Q Consensus 976 ss~L~~~v~s~~erl~~l~~lie~f~~~vp~~~ap~p~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~f 1055 (2062)
+. .++
T Consensus 564 -----------------------------~~---------------------~~~------------------------- 568 (776)
T KOG0390|consen 564 -----------------------------PG---------------------KLK------------------------- 568 (776)
T ss_pred -----------------------------cc---------------------ccc-------------------------
Confidence 00 000
Q ss_pred CCccccc-cccchHHHHHHHHHHhhhCC-CeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCC
Q 000139 1056 PDRRLIQ-FDCGKLQELAILLRKLKSDG-HRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPK 1133 (2062)
Q Consensus 1056 Pd~rLiq-~dSGKLq~L~~LLrkLks~G-hKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~ 1133 (2062)
..... .-+|||..|..+|...+... .++.+-++++.+||+++.+++.+|+.|+||||+|+..|||.+|++||..+.
T Consensus 569 --~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~ 646 (776)
T KOG0390|consen 569 --LDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPES 646 (776)
T ss_pred --cccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCC
Confidence 00000 13799999999996665543 688888999999999999999999999999999999999999999998555
Q ss_pred c-eEEEEeccccccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHH
Q 000139 1134 I-FLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDL 1212 (2062)
Q Consensus 1134 I-fVfLLSTrAGG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~qKr~L~~~ 1212 (2062)
. ||||+|++|||+||||+||++||+||++|||+.|.|||+||||+||+|+||||||++.|||||+||++|..|..|..+
T Consensus 647 ~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~qrq~~K~~lS~~ 726 (776)
T KOG0390|consen 647 PSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIYQRQTHKEGLSSM 726 (776)
T ss_pred CceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHHHHHHHHhhhhhhe
Confidence 5 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCccccccCChhhhhcC
Q 000139 1213 VIQSGGYNTEFFKKLDPMELFSG 1235 (2062)
Q Consensus 1213 vIq~g~ft~~~fk~~di~eLF~~ 1235 (2062)
|++........|...++..+|+.
T Consensus 727 v~~~~~~~~~~~~~~~~~~lf~~ 749 (776)
T KOG0390|consen 727 VFDEEEDVEKHFFTEDLKTLFDL 749 (776)
T ss_pred EEecccccccccchHHHHHHHhh
Confidence 99887765544444556667764
No 12
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.6e-72 Score=682.36 Aligned_cols=519 Identities=29% Similarity=0.474 Sum_probs=398.4
Q ss_pred ccccccCCCCCCCCCcHHHHHHHHHHHHHhh-cCCcEEEEcCCCChHHHHHHHHHHHHHHhc-------CCCCcEEEEec
Q 000139 511 TQVRTKFPFLLKFPLREYQHIGLDWLVTMYE-KRLNGILADEMGLGKTIMTIAMLAHLACEK-------GIWGPHLIVVP 582 (2062)
Q Consensus 511 t~vkt~vP~lLk~~LRpYQ~~GL~WLv~l~~-~~~gGILADEMGLGKTIQaIALLa~L~~~~-------g~~Gp~LIVvP 582 (2062)
..+.+.-|++++..|.|||+.|+.||..... .+.||||||+||||||+.+|++|.+..... ....++|||||
T Consensus 312 et~lte~P~g~~v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~P 391 (901)
T KOG4439|consen 312 ETDLTETPDGLKVELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICP 391 (901)
T ss_pred cccccCCCCcceeecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCc
Confidence 4456788999999999999999999987754 456999999999999999999999865431 12236999999
Q ss_pred CCcHHHHHHHHHHHC--CCCeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhh----------chhhhhccCeeEE
Q 000139 583 TSVMLNWETEFLKWC--PAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQ----------DSKVFKRKKWKYL 650 (2062)
Q Consensus 583 tSLL~QW~~Efkkw~--P~lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~----------d~~~L~r~~W~lV 650 (2062)
.|++.||..|+.+-. ..+.|++|||..+ |.... .....||||||||..+.+ ....+.++.|.+|
T Consensus 392 aSli~qW~~Ev~~rl~~n~LsV~~~HG~n~-r~i~~---~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RV 467 (901)
T KOG4439|consen 392 ASLIHQWEAEVARRLEQNALSVYLYHGPNK-REISA---KELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRV 467 (901)
T ss_pred HHHHHHHHHHHHHHHhhcceEEEEecCCcc-ccCCH---HHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHh
Confidence 999999999998766 4589999999985 21111 123589999999999987 2456888999999
Q ss_pred EEcCccccCChhhHHHHHHHcccCceEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCcccccccccH
Q 000139 651 ILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQEKVNK 730 (2062)
Q Consensus 651 ILDEAH~IKN~~Sk~~qaL~~L~a~~RLLLTGTPLQNsL~ELwSLL~FL~P~iF~s~~eFkewFsnPisg~~eg~~~~n~ 730 (2062)
||||||+|||.+++-+.+++.|.+.+||+|||||+||++-|+|+|+.||...+|++...|++|+.++-.+
T Consensus 468 ILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~s~~---------- 537 (901)
T KOG4439|consen 468 ILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNMSKG---------- 537 (901)
T ss_pred hhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCcccc----------
Confidence 9999999999999999999999999999999999999999999999999999999999999998765433
Q ss_pred HHHHHHHHhhhhhhhhhhhhhHhh-----cCCCceeEEEEecCCHHHHHHHHHHHHhHHHHHHh---------hhcc---
Q 000139 731 EVVDRLHNVLRPFILRRLKRDVEK-----QLPMKQEHVIYCRLSKRQRNLYEDFIASSETQATL---------ASAN--- 793 (2062)
Q Consensus 731 ~~i~rLhkvLrpFmLRRtK~DVek-----qLP~K~EhVV~c~LSkrQR~LYdd~is~~~t~~~L---------~sgn--- 793 (2062)
...||.-+.++.||||||..... .||.+...++.+.|+..+...|+-++.....-..- ..++
T Consensus 538 -g~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~~~~~~~~s 616 (901)
T KOG4439|consen 538 -GANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQREDRNNDGGYQS 616 (901)
T ss_pred -chhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhhhccccCccc
Confidence 23578888999999999998866 79999999999999999999999877644321100 0011
Q ss_pred ------------------------------hhhHHHHHHHHHHHhCCCcccCCCCcccccccccccccccccccccCCCC
Q 000139 794 ------------------------------FFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMSGIDSQLSSSVCSMLSPS 843 (2062)
Q Consensus 794 ------------------------------~~silnvLmqLRKvCNHP~Lfe~r~i~S~f~~~~~~~~l~s~~~~~l~~~ 843 (2062)
...++..|++|||+|+||.+.... +++.
T Consensus 617 ~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~----------------------ld~~ 674 (901)
T KOG4439|consen 617 RNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAA----------------------LDPE 674 (901)
T ss_pred cchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccc----------------------cCHH
Confidence 123789999999999999875332 1110
Q ss_pred CCcchhhccccccccccccccCccchhhhhhhcCchhHHHHhhhcccccccCCccccccccCCchHHHHHHHHHHHHHHH
Q 000139 844 PLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVGPFCTHRKRLNGTSIFEKIRKALLEERRR 923 (2062)
Q Consensus 844 ~~~~~dl~~l~ll~~~le~~~~~~e~~e~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~~~gt~~~e~l~~~l~eer~~ 923 (2062)
.+ ...+.. ..+.... ...+ +.+
T Consensus 675 ~~-----~~~g~~------------~sde~~~-----------e~~~--------------------------l~e---- 696 (901)
T KOG4439|consen 675 EF-----QMNGGD------------DSDEEQL-----------EEDN--------------------------LAE---- 696 (901)
T ss_pred Hh-----hhcCcc------------hhhhhhh-----------hhhH--------------------------HHh----
Confidence 00 000000 0000000 0000 000
Q ss_pred HHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhccchhhhhhccChHHHHHHhhhhhhhhhhc
Q 000139 924 EAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLSPVERFQRMIGLVESFMFA 1003 (2062)
Q Consensus 924 ~~~~~~~~~~~~n~~rc~~~p~y~~~L~~ll~~~~p~~~~~~~~~~~~~~~~ss~L~~~v~s~~erl~~l~~lie~f~~~ 1003 (2062)
... .....|..
T Consensus 697 -l~k-------~~~T~~~~------------------------------------------------------------- 707 (901)
T KOG4439|consen 697 -LEK-------NDETDCSD------------------------------------------------------------- 707 (901)
T ss_pred -hhh-------cccccccc-------------------------------------------------------------
Confidence 000 00000000
Q ss_pred ccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhcccccCCccccccccchHHHHHHHHHHh-hhCC
Q 000139 1004 IPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKL-KSDG 1082 (2062)
Q Consensus 1004 vp~~~ap~p~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~fPd~rLiq~dSGKLq~L~~LLrkL-ks~G 1082 (2062)
..|...+ .. +.. +.+-| -+.|.|+..+...|..+ ....
T Consensus 708 ----------D~~ed~p-~~-----~~~--------------------q~Fe~-----~r~S~Ki~~~l~~le~i~~~sk 746 (901)
T KOG4439|consen 708 ----------DNCEDLP-TA-----FPD--------------------QAFEP-----DRPSCKIAMVLEILETILTSSK 746 (901)
T ss_pred ----------ccccccc-cc-----chh--------------------hhccc-----ccchhHHHHHHHHHHHHhhccc
Confidence 0000000 00 000 00000 12366888888888777 5667
Q ss_pred CeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcC-CCceEEEEeccccccccCcccCCEEEEecC
Q 000139 1083 HRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTN-PKIFLFILSTRSGGVGINLVGADTVIFYDS 1161 (2062)
Q Consensus 1083 hKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D-~~IfVfLLSTrAGG~GLNLT~ADtVIfyD~ 1161 (2062)
+|++|.|||+.+|+++...|...|+.|..|+|...+.+|+.+++.||.. ++.+|+|||..+||+||||++|+|+|++|.
T Consensus 747 eK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDl 826 (901)
T KOG4439|consen 747 EKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDL 826 (901)
T ss_pred ceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEec
Confidence 9999999999999999999999999999999999999999999999985 459999999999999999999999999999
Q ss_pred CCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCCC-CccccccCChhhhhc
Q 000139 1162 DWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGY-NTEFFKKLDPMELFS 1234 (2062)
Q Consensus 1162 dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~qKr~L~~~vIq~g~f-t~~~fk~~di~eLF~ 1234 (2062)
.|||+.++||.||+||+||+|+|+||||++++|||++|...|..|..|...|+.|..- ...-++-.+++-||+
T Consensus 827 HWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTvEqrV~~LQdkKldlA~~VL~G~~tr~~~kLT~adlk~LFg 900 (901)
T KOG4439|consen 827 HWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTVEQRVKSLQDKKLDLAKGVLTGSATRKMNKLTLADLKKLFG 900 (901)
T ss_pred ccCHHHHHHHHHHHHHhcccCceEEEEEEecCcHHHHHHHHHHHHHHHHhhhccCccccccccccHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999984332 133444455566664
No 13
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=3.7e-71 Score=677.48 Aligned_cols=595 Identities=28% Similarity=0.409 Sum_probs=411.2
Q ss_pred ccccCCCCCCCCCcHHHHHHHHHHHHHh---------hcCCcEEEEcCCCChHHHHHHHHHHHH-HHhcCCCCcEEEEec
Q 000139 513 VRTKFPFLLKFPLREYQHIGLDWLVTMY---------EKRLNGILADEMGLGKTIMTIAMLAHL-ACEKGIWGPHLIVVP 582 (2062)
Q Consensus 513 vkt~vP~lLk~~LRpYQ~~GL~WLv~l~---------~~~~gGILADEMGLGKTIQaIALLa~L-~~~~g~~Gp~LIVvP 582 (2062)
..+.+|..|-..|+|||..||.||+... ..+.|||||+-||||||+|+|+|+..+ .|.+-....+|||||
T Consensus 657 ~~VqV~rslv~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~P 736 (1567)
T KOG1015|consen 657 PLVQVHRSLVIKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCP 736 (1567)
T ss_pred chhhccHhHHhhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcc
Confidence 3556788888999999999999998543 247799999999999999999999864 455555678999999
Q ss_pred CCcHHHHHHHHHHHCCCCeE----EEE----eCChhhHHhhhhccCCCCCceEEEEehhhhhhc---------------h
Q 000139 583 TSVMLNWETEFLKWCPAFKI----LTY----FGSAKERKFKRQGWLKPNSFHVCITTYRLIIQD---------------S 639 (2062)
Q Consensus 583 tSLL~QW~~Efkkw~P~lkV----l~y----~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d---------------~ 639 (2062)
.+++.||..||.+|.+++.. -+| +-....|....+.|...+ -|+|..|.+++.- .
T Consensus 737 lNt~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~g--gVmIiGYdmyRnLa~gr~vk~rk~ke~f~ 814 (1567)
T KOG1015|consen 737 LNTALNWMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQEDG--GVMIIGYDMYRNLAQGRNVKSRKLKEIFN 814 (1567)
T ss_pred hHHHHHHHHHHHHhcccccccccceeehhhhccChHHHHHHHHHHHhcC--CEEEEehHHHHHHhcccchhhhHHHHHHH
Confidence 99999999999999986432 222 122345566667787766 4999999998753 1
Q ss_pred hhhhccCeeEEEEcCccccCChhhHHHHHHHcccCceEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCC
Q 000139 640 KVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPIS 719 (2062)
Q Consensus 640 ~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L~a~~RLLLTGTPLQNsL~ELwSLL~FL~P~iF~s~~eFkewFsnPis 719 (2062)
..+..-.+++|||||||.|||..|.+++++..+++++||+||||||||||||+|.|++|+.|+++++..+|.+.|.|||+
T Consensus 815 k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~EfrNRFvNpI~ 894 (1567)
T KOG1015|consen 815 KALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFRNRFVNPIQ 894 (1567)
T ss_pred HhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHHHhhcCccc
Confidence 23445679999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred Cccccccc-----ccHHHHHHHHHhhhhhhhhhhhhhHhhcCCCceeEEEEecCCHHHHHHHHHHHHhHHHHHHh----h
Q 000139 720 GMVEGQEK-----VNKEVVDRLHNVLRPFILRRLKRDVEKQLPMKQEHVIYCRLSKRQRNLYEDFIASSETQATL----A 790 (2062)
Q Consensus 720 g~~eg~~~-----~n~~~i~rLhkvLrpFmLRRtK~DVekqLP~K~EhVV~c~LSkrQR~LYdd~is~~~t~~~L----~ 790 (2062)
...-.... .-.....-|+.+|..|+-|+--.-+.+.||||+++||.++||+.|+.||..|+. ..+..+. .
T Consensus 895 nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~-h~~~~G~d~eg~ 973 (1567)
T KOG1015|consen 895 NGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLD-HLTGVGNDSEGG 973 (1567)
T ss_pred cCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHh-hccccCCccccc
Confidence 43221111 112344569999999999999999999999999999999999999999999987 2221111 1
Q ss_pred hcchhhHHHHHHHHHHHhCCCcccCCCCcccccccccccccccccccccCCCCCCcchhhccccccccccccccCccchh
Q 000139 791 SANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMSGIDSQLSSSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESD 870 (2062)
Q Consensus 791 sgn~~silnvLmqLRKvCNHP~Lfe~r~i~S~f~~~~~~~~l~s~~~~~l~~~~~~~~dl~~l~ll~~~le~~~~~~e~~ 870 (2062)
.|-...++.-.--|+++-+||..+.-+.+... ....++..+ +..+.++
T Consensus 974 ~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~e------------------nkR~~sedd--------------m~~fi~D 1021 (1567)
T KOG1015|consen 974 RGAGARLFQDFQMLSRIWTHPWCLQLDSISKE------------------NKRYFSEDD--------------MDEFIAD 1021 (1567)
T ss_pred cchhhhHHHHHHHHHHHhcCCCceeechhhhh------------------hcccccccc--------------hhccccC
Confidence 12233456666678999999987532211000 000000000 0000000
Q ss_pred hhhhhcCchhHHHHhhhcccccccCCccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccC--CCCccc-
Q 000139 871 ELNAIATPASLIKERADLNNLEEVGPFCTHRKRLNGTSIFEKIRKALLEERRREAQDRASSVAWWNSLRCQ--KKPVYS- 947 (2062)
Q Consensus 871 e~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~~~gt~~~e~l~~~l~eer~~~~~~~~~~~~~~n~~rc~--~~p~y~- 947 (2062)
.... .+. .... ...|. +....+
T Consensus 1022 ~sde-----------------~e~--------s~~s------------------------------~d~~~~~ks~~~s~ 1046 (1567)
T KOG1015|consen 1022 DSDE-----------------TEM--------SLSS------------------------------DDYTKKKKSGKKSK 1046 (1567)
T ss_pred CCcc-----------------ccc--------cccc------------------------------cchhhccccccccc
Confidence 0000 000 0000 00000 000000
Q ss_pred --hhhHhHhhcCCcchhhhhhhhhhhhhccchhhhhhccChHHHHHHhhhhhhhhhhcccccCCCCCccccCCCCCcccc
Q 000139 948 --TSLRELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLSPVERFQRMIGLVESFMFAIPAARAPAPVCWCSKSGASVFL 1025 (2062)
Q Consensus 948 --~~L~~ll~~~~p~~~~~~~~~~~~~~~~ss~L~~~v~s~~erl~~l~~lie~f~~~vp~~~ap~p~~~~~~~~~~~~l 1025 (2062)
........ ... ..+...+.....-.......+.-..+...+.-+.++.. .......++|..|.
T Consensus 1047 ~Desss~~~~-~g~-~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag----~~s~~~d~ppew~k--------- 1111 (1567)
T KOG1015|consen 1047 KDESSSGSGS-DGD-VEVIKVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAG----SSSNPSDPPPEWYK--------- 1111 (1567)
T ss_pred cccccccccc-CCc-hhhhhhhhhhccccccCcccccCCCcchHHHHhhcccc----cccCCCCCchHhHH---------
Confidence 00000000 000 00000000000000000000000000000000000000 00000001111000
Q ss_pred ccchhhhhccccCCCCCCchhhhhhcccccCCccccccccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHH-
Q 000139 1026 QPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISL- 1104 (2062)
Q Consensus 1026 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~fPd~rLiq~dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~- 1104 (2062)
.. +.-.+ .-+...||||-.|..+|+....-|.|+|||||....||+|+.||.+
T Consensus 1112 -----d~--------------------v~e~d-~~v~~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v 1165 (1567)
T KOG1015|consen 1112 -----DF--------------------VTEAD-AEVLEHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELV 1165 (1567)
T ss_pred -----hh--------------------hhhhh-hhhhhcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhh
Confidence 00 00001 1122459999999999999999999999999999999999999964
Q ss_pred ---------------------cCCcEEEecCCCCHHHHHHHHHHHhc--CCCceEEEEeccccccccCcccCCEEEEecC
Q 000139 1105 ---------------------YGYTYMRLDGSTQPEERQTLMQRFNT--NPKIFLFILSTRSGGVGINLVGADTVIFYDS 1161 (2062)
Q Consensus 1105 ---------------------~Gi~y~RLDGsTs~eqRq~lmerFN~--D~~IfVfLLSTrAGG~GLNLT~ADtVIfyD~ 1161 (2062)
.|..|.||||+|...+|+++.++||. +-+.+|||+||||||+||||.+||+|||||-
T Consensus 1166 ~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDa 1245 (1567)
T KOG1015|consen 1166 SREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDA 1245 (1567)
T ss_pred cccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEec
Confidence 26679999999999999999999997 6788999999999999999999999999999
Q ss_pred CCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCChhhhhcCCCCC
Q 000139 1162 DWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRTL 1239 (2062)
Q Consensus 1162 dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~qKr~L~~~vIq~g~ft~~~fk~~di~eLF~~~~~~ 1239 (2062)
.|||+.|.|+|=|+||+||||||+|||||+.||+||+||++|..|..+...|++...... .|.+.++.+||+-...+
T Consensus 1246 sWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeKIYkRQVTKqsls~RVVDeqQv~R-hy~~neLteLy~fep~~ 1322 (1567)
T KOG1015|consen 1246 SWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEKIYKRQVTKQSLSFRVVDEQQVER-HYTMNELTELYTFEPDL 1322 (1567)
T ss_pred ccCCccchHHHHHHHhhcCcCceeehhhhhcccHHHHHHHHHHhHhhhhhhhhhHHHHHH-HhhHhhhHHHhhcCCcc
Confidence 999999999999999999999999999999999999999999999999999998765543 55677888998865433
No 14
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=1.8e-69 Score=727.53 Aligned_cols=494 Identities=42% Similarity=0.674 Sum_probs=413.1
Q ss_pred CCCCCCCcHHHHHHHHHHH-HHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCC-CCcEEEEecCCcHHHHHHHHHHH
Q 000139 519 FLLKFPLREYQHIGLDWLV-TMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGI-WGPHLIVVPTSVMLNWETEFLKW 596 (2062)
Q Consensus 519 ~lLk~~LRpYQ~~GL~WLv-~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~-~Gp~LIVvPtSLL~QW~~Efkkw 596 (2062)
..+...||+||..|++||. .++....||||||+||||||+|+|+++.++...... .||+|||||.+++.||.+||.+|
T Consensus 333 ~~~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw~~e~~k~ 412 (866)
T COG0553 333 VDLSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWKREFEKF 412 (866)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHHHHHHHHhhh
Confidence 6677899999999999999 889999999999999999999999999986655444 58999999999999999999999
Q ss_pred CCCCe-EEEEeCChhh----HHhhhhccCCC---CCceEEEEehhhhhh---chhhhhccCeeEEEEcCccccCChhhHH
Q 000139 597 CPAFK-ILTYFGSAKE----RKFKRQGWLKP---NSFHVCITTYRLIIQ---DSKVFKRKKWKYLILDEAHLIKNWKSQR 665 (2062)
Q Consensus 597 ~P~lk-Vl~y~Gs~ke----rk~~r~gw~k~---~~fdVVITSYe~l~~---d~~~L~r~~W~lVILDEAH~IKN~~Sk~ 665 (2062)
.|.++ ++.|+|.... +..... +... ..|+++||||+.+.+ +...+....|+++|+||||+|||..+..
T Consensus 413 ~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~s~~ 491 (866)
T COG0553 413 APDLRLVLVYHGEKSELDKKREALRD-LLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQSSE 491 (866)
T ss_pred CccccceeeeeCCcccccHHHHHHHH-HhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhhhHH
Confidence 99999 9999998853 222222 2222 238999999999999 9999999999999999999999999999
Q ss_pred HHHHHcccCceEEEEeccCCCCChHHHHHHHH-HhCCCCCC-ChHHHHHHhcCCCCCccccc-ccccHHHHHHHHHhhhh
Q 000139 666 WQTLLNFNSKRRILLTGTPLQNDLMELWSLMH-FLMPHIFQ-SHQEFKDWFCNPISGMVEGQ-EKVNKEVVDRLHNVLRP 742 (2062)
Q Consensus 666 ~qaL~~L~a~~RLLLTGTPLQNsL~ELwSLL~-FL~P~iF~-s~~eFkewFsnPisg~~eg~-~~~n~~~i~rLhkvLrp 742 (2062)
++++..+++.+|++|||||++|++.|||+|++ |++|+.+. +...|..||..|+....... .......+.+|+.+++|
T Consensus 492 ~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 571 (866)
T COG0553 492 GKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKLLSP 571 (866)
T ss_pred HHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 99999999 56999999999875332211 12233456669999999
Q ss_pred hhhhhhhhh--HhhcCCCceeEEEEecCCHHHHHHHHHHHHh---HHHH--HHhhhc--------chhhHHHHHHHHHHH
Q 000139 743 FILRRLKRD--VEKQLPMKQEHVIYCRLSKRQRNLYEDFIAS---SETQ--ATLASA--------NFFGMISVIMQLRKV 807 (2062)
Q Consensus 743 FmLRRtK~D--VekqLP~K~EhVV~c~LSkrQR~LYdd~is~---~~t~--~~L~sg--------n~~silnvLmqLRKv 807 (2062)
|+|||+|.+ |.+.||+|.+++++|.|+..|+.+|..+... .... ...... ....+++.+++||++
T Consensus 572 f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lr~~ 651 (866)
T COG0553 572 FILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRLRQI 651 (866)
T ss_pred HhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHh
Confidence 999999999 8999999999999999999999999999883 2221 111111 267899999999999
Q ss_pred hCCCcccCCCC-cccccccccccccccccccccCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHhh
Q 000139 808 CNHPDLFEGRP-IVSSFDMSGIDSQLSSSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERA 886 (2062)
Q Consensus 808 CNHP~Lfe~r~-i~S~f~~~~~~~~l~s~~~~~l~~~~~~~~dl~~l~ll~~~le~~~~~~e~~e~~~l~tp~~li~~~~ 886 (2062)
||||.++..+. ....
T Consensus 652 ~~~p~l~~~~~~~~~~---------------------------------------------------------------- 667 (866)
T COG0553 652 CNHPALVDEGLEATFD---------------------------------------------------------------- 667 (866)
T ss_pred ccCccccccccccccc----------------------------------------------------------------
Confidence 99999975430 0000
Q ss_pred hcccccccCCccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhh
Q 000139 887 DLNNLEEVGPFCTHRKRLNGTSIFEKIRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQ 966 (2062)
Q Consensus 887 ~l~~~~~~~p~~~~~~~~~gt~~~e~l~~~l~eer~~~~~~~~~~~~~~n~~rc~~~p~y~~~L~~ll~~~~p~~~~~~~ 966 (2062)
.... ...+. .+
T Consensus 668 ---------------------~~~~-------------------------~~~~~----------------~~------- 678 (866)
T COG0553 668 ---------------------RIVL-------------------------LLRED----------------KD------- 678 (866)
T ss_pred ---------------------hhhh-------------------------hhhcc----------------cc-------
Confidence 0000 00000 00
Q ss_pred hhhhhhhccchhhhhhccChHHHHHHhhhhhhhhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchh
Q 000139 967 KTVRRSYLYSSKLADIVLSPVERFQRMIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRP 1046 (2062)
Q Consensus 967 ~~~~~~~~~ss~L~~~v~s~~erl~~l~~lie~f~~~vp~~~ap~p~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~l~~ 1046 (2062)
...
T Consensus 679 ----------------------------------------------~~~------------------------------- 681 (866)
T COG0553 679 ----------------------------------------------FDY------------------------------- 681 (866)
T ss_pred ----------------------------------------------ccc-------------------------------
Confidence 000
Q ss_pred hhhhcccccCCcccccccc-chHHHHHHHH-HHhhhCCC--eEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHH
Q 000139 1047 AIVRRQVYFPDRRLIQFDC-GKLQELAILL-RKLKSDGH--RALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQ 1122 (2062)
Q Consensus 1047 ~~~~~~~~fPd~rLiq~dS-GKLq~L~~LL-rkLks~Gh--KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq 1122 (2062)
....+...| +|++.+..+| ..++.+|+ |||||+||+.|+++|+.+|...++.|+++||+|+...|+
T Consensus 682 ----------~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~ 751 (866)
T COG0553 682 ----------LKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQ 751 (866)
T ss_pred ----------ccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHH
Confidence 000012246 9999999999 89999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCceEEEEeccccccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHH
Q 000139 1123 TLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKK 1202 (2062)
Q Consensus 1123 ~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkk 1202 (2062)
.++++||+++.++||++|+++||+|||||+|++||+||+||||+.+.||++|||||||+++|.||||++++||||+|+.+
T Consensus 752 ~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~ 831 (866)
T COG0553 752 ELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILEL 831 (866)
T ss_pred HHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHHH
Confidence 99999999889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc-CCCCccccccCChhhhh
Q 000139 1203 ANQKRALDDLVIQS-GGYNTEFFKKLDPMELF 1233 (2062)
Q Consensus 1203 a~qKr~L~~~vIq~-g~ft~~~fk~~di~eLF 1233 (2062)
+..|+.+...++++ +.-....+...++..||
T Consensus 832 ~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 863 (866)
T COG0553 832 QEKKQELLDSLIDAEGEKELSKLSIEDLLDLF 863 (866)
T ss_pred HHHHHHHHHHHhhhhcccchhhccHHHHHHHh
Confidence 99999999999985 44444444444444554
No 15
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=8.9e-59 Score=559.72 Aligned_cols=536 Identities=28% Similarity=0.431 Sum_probs=374.7
Q ss_pred CCCCCCcHHHHHHHHHHHHH-------hh--cCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHH
Q 000139 520 LLKFPLREYQHIGLDWLVTM-------YE--KRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWE 590 (2062)
Q Consensus 520 lLk~~LRpYQ~~GL~WLv~l-------~~--~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~ 590 (2062)
.|...|+|||+-||.||+.. |. .+.|||||+-||||||+|+|+|+--+++ ....+.+|+|||-.++.||.
T Consensus 250 qla~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflR-hT~AKtVL~ivPiNTlQNWl 328 (1387)
T KOG1016|consen 250 QLAHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLR-HTKAKTVLVIVPINTLQNWL 328 (1387)
T ss_pred hhHhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhh-cCccceEEEEEehHHHHHHH
Confidence 45567999999999998732 22 4679999999999999999999987765 45567899999999999999
Q ss_pred HHHHHHCCC-----------CeEEEEeCChhh---HHhhhhccCCCCCceEEEEehhhhhhch-----------------
Q 000139 591 TEFLKWCPA-----------FKILTYFGSAKE---RKFKRQGWLKPNSFHVCITTYRLIIQDS----------------- 639 (2062)
Q Consensus 591 ~Efkkw~P~-----------lkVl~y~Gs~ke---rk~~r~gw~k~~~fdVVITSYe~l~~d~----------------- 639 (2062)
.||..|.|. |.|++.....+. |......|...++ |+++.|++++--.
T Consensus 329 sEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv~~GG--VlLvGYemfRLL~lk~~~~~grpkkt~kr~ 406 (1387)
T KOG1016|consen 329 SEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWVQTGG--VLLVGYEMFRLLILKTLPKKGRPKKTLKRI 406 (1387)
T ss_pred HHhhhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHHhccCC--EEEehHHHHHHHHHhcccccCCcccccccc
Confidence 999999985 566666554443 4444557877666 9999999885321
Q ss_pred ---------------------hhhhccCeeEEEEcCccccCChhhHHHHHHHcccCceEEEEeccCCCCChHHHHHHHHH
Q 000139 640 ---------------------KVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHF 698 (2062)
Q Consensus 640 ---------------------~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L~a~~RLLLTGTPLQNsL~ELwSLL~F 698 (2062)
..|-+-..++|||||+|+|||.....+.+|..+++++|+.|||-|+||||-|.|.|+.|
T Consensus 407 ~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYwCMVDF 486 (1387)
T KOG1016|consen 407 SSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNLLEYWCMVDF 486 (1387)
T ss_pred CCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccchHHHhhhhee
Confidence 11334468999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCChHHHHHHhcCCCCCccccccc-----ccHHHHHHHHHhhhhhhhhhhhhhHhhcCCCceeEEEEecCCHHHH
Q 000139 699 LMPHIFQSHQEFKDWFCNPISGMVEGQEK-----VNKEVVDRLHNVLRPFILRRLKRDVEKQLPMKQEHVIYCRLSKRQR 773 (2062)
Q Consensus 699 L~P~iF~s~~eFkewFsnPisg~~eg~~~-----~n~~~i~rLhkvLrpFmLRRtK~DVekqLP~K~EhVV~c~LSkrQR 773 (2062)
+.|..++++.+|...|..||.+..--... .-.-...-||.+|..|+-||+-.-+.+.||.|+|+||.+++|+.||
T Consensus 487 VRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~~LP~k~EyViLvr~s~iQR 566 (1387)
T KOG1016|consen 487 VRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKKILPEKKEYVILVRKSQIQR 566 (1387)
T ss_pred ccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHhhhcccccceEEEEeHHHHHH
Confidence 99999999999999999999532111111 1112344599999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHhhhcchhhHHHHHHHH---HHHhCCCcccCCCCcccccccccccccccccccccCCCCCCcchhh
Q 000139 774 NLYEDFIASSETQATLASANFFGMISVIMQL---RKVCNHPDLFEGRPIVSSFDMSGIDSQLSSSVCSMLSPSPLSTADL 850 (2062)
Q Consensus 774 ~LYdd~is~~~t~~~L~sgn~~silnvLmqL---RKvCNHP~Lfe~r~i~S~f~~~~~~~~l~s~~~~~l~~~~~~~~dl 850 (2062)
.||+.||...... ....+ ..++|-|+.+ -|+-|||+++.. ++....
T Consensus 567 ~LY~~Fm~d~~r~--~~~~~-~~~~NPLkAF~vCcKIWNHPDVLY~----------------------~l~k~~------ 615 (1387)
T KOG1016|consen 567 QLYRNFMLDAKRE--IAANN-DAVFNPLKAFSVCCKIWNHPDVLYR----------------------LLEKKK------ 615 (1387)
T ss_pred HHHHHHHHHHHHh--hcccc-ccccChHHHHHHHHHhcCChHHHHH----------------------HHHHhh------
Confidence 9999999543321 11222 2234444444 455689987411 000000
Q ss_pred ccccccccccccccCccchhhhhhhcCchhHHHHhhhcccccccCCccccccccCCchHHHHHHHHHHHHHHHHHHhhhh
Q 000139 851 KGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVGPFCTHRKRLNGTSIFEKIRKALLEERRREAQDRAS 930 (2062)
Q Consensus 851 ~~l~ll~~~le~~~~~~e~~e~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~~~gt~~~e~l~~~l~eer~~~~~~~~~ 930 (2062)
.++-..+. +.+....
T Consensus 616 ------------------------~a~e~dl~----------------------------------vee~~~a------- 630 (1387)
T KOG1016|consen 616 ------------------------RAEEDDLR----------------------------------VEEMKFA------- 630 (1387)
T ss_pred ------------------------hhhhhhhh----------------------------------HHHHhhh-------
Confidence 00000000 0000000
Q ss_pred hhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhccchhhhhhccChHHHHHHhhhhhhhhhhcccccCCC
Q 000139 931 SVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLSPVERFQRMIGLVESFMFAIPAARAP 1010 (2062)
Q Consensus 931 ~~~~~n~~rc~~~p~y~~~L~~ll~~~~p~~~~~~~~~~~~~~~~ss~L~~~v~s~~erl~~l~~lie~f~~~vp~~~ap 1010 (2062)
....+|......+..- -..+..+ ... .++.--....+..+|
T Consensus 631 ----g~~~~~~P~~~~~~~~--s~~laSs----~~k-----------------------------~~n~t~kp~~s~~~p 671 (1387)
T KOG1016|consen 631 ----GLQQQQSPFNSIPSNP--STPLASS----TSK-----------------------------SANKTKKPRGSKKAP 671 (1387)
T ss_pred ----cccccCCCCCCCCCCC--CCcccch----hhh-----------------------------hhcccCCcccCcCCC
Confidence 0011121100000000 0000000 000 000000000001111
Q ss_pred CCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhcccccCCccccccccchHHHHHHHHHHhhhCCCeEEEEeC
Q 000139 1011 APVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSDGHRALIFTQ 1090 (2062)
Q Consensus 1011 ~p~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~fPd~rLiq~dSGKLq~L~~LLrkLks~GhKVLIFSQ 1090 (2062)
.-... . ........|... ++..+... +--.+.|+-.+..+|..-..-|.|+|||||
T Consensus 672 ~f~ee--~--~e~~~y~~w~~e-------l~~nYq~g-------------vLen~pk~V~~~~~~des~~~g~kil~fSq 727 (1387)
T KOG1016|consen 672 KFDEE--D--EEVEKYSDWTFE-------LFENYQEG-------------VLENGPKIVISLEILDESTQIGEKILIFSQ 727 (1387)
T ss_pred Ccccc--c--ccccchhhHHHH-------HHhhhhcc-------------cccCCCceEEEEeeeccccccCceEEEeec
Confidence 10000 0 000000000000 00000000 001234555556666666667999999999
Q ss_pred chHHHHHHHHHHHHc------------------CCcEEEecCCCCHHHHHHHHHHHhcCCCce-EEEEeccccccccCcc
Q 000139 1091 MTKMLDILEEFISLY------------------GYTYMRLDGSTQPEERQTLMQRFNTNPKIF-LFILSTRSGGVGINLV 1151 (2062)
Q Consensus 1091 ~t~mLDILe~~L~~~------------------Gi~y~RLDGsTs~eqRq~lmerFN~D~~If-VfLLSTrAGG~GLNLT 1151 (2062)
....||+|+.+|..+ +..|+|+||.|+...|.++|++||..+.+. .|+||||+|..||||.
T Consensus 728 ~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstrag~lGinLI 807 (1387)
T KOG1016|consen 728 NLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRAGSLGINLI 807 (1387)
T ss_pred chhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhccccccceee
Confidence 999999999999754 346999999999999999999999988776 8999999999999999
Q ss_pred cCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 000139 1152 GADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSG 1217 (2062)
Q Consensus 1152 ~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~qKr~L~~~vIq~g 1217 (2062)
+|+++|+||.-|||..++||+.|++|+||+|+++|||||+.+|+|-+||.++-.|+.+.+.|+++-
T Consensus 808 sanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGmsdRvVDd~ 873 (1387)
T KOG1016|consen 808 SANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGMSDRVVDDA 873 (1387)
T ss_pred ccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhccchhhhhccc
Confidence 999999999999999999999999999999999999999999999999999999999999999654
No 16
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=2.5e-57 Score=580.11 Aligned_cols=517 Identities=30% Similarity=0.450 Sum_probs=385.2
Q ss_pred HHHHHHHHHHHHHh-hcCCcEEEEcCCCChHHHHHHHHHHHHHHhcC------CCCcEEEEecCCcHHHHHHHHHHHCC-
Q 000139 527 EYQHIGLDWLVTMY-EKRLNGILADEMGLGKTIMTIAMLAHLACEKG------IWGPHLIVVPTSVMLNWETEFLKWCP- 598 (2062)
Q Consensus 527 pYQ~~GL~WLv~l~-~~~~gGILADEMGLGKTIQaIALLa~L~~~~g------~~Gp~LIVvPtSLL~QW~~Efkkw~P- 598 (2062)
.+|..+..|+.... ..-.|||+||+||+|||+++|+++........ ..+.+|||||.+++.||..|+.+..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek~~~~ 214 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEKVTEE 214 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhccCCc
Confidence 45555444444432 23459999999999999999999987544333 45679999999999999999965553
Q ss_pred -CCeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHcccCceE
Q 000139 599 -AFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRR 677 (2062)
Q Consensus 599 -~lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L~a~~R 677 (2062)
.+.+++||| | ...+....+++||||||.++.. ..+..+.|.+||+||||.|+|.+++.++++..+.+.+|
T Consensus 215 ~~l~v~v~~g----r---~kd~~el~~~dVVltTy~il~~--~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~a~~R 285 (674)
T KOG1001|consen 215 DKLSIYVYHG----R---TKDKSELNSYDVVLTTYDILKN--SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLDAKYR 285 (674)
T ss_pred cceEEEEecc----c---ccccchhcCCceEEeeHHHhhc--ccccceeEEEEEeccccccCCcchHhhhhheeecccee
Confidence 488999999 1 1123345788999999999986 56777999999999999999999999999999999999
Q ss_pred EEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCcccccccccHHHHHHHHHhhhhhhhhhhhhhHh----
Q 000139 678 ILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRRLKRDVE---- 753 (2062)
Q Consensus 678 LLLTGTPLQNsL~ELwSLL~FL~P~iF~s~~eFkewFsnPisg~~eg~~~~n~~~i~rLhkvLrpFmLRRtK~DVe---- 753 (2062)
|.|||||+||++.+||+++.|+.-++|.....|...+..|+.... ....+.++..+|+++++||+|..-.
T Consensus 286 WcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~------~~~~~k~l~~~L~~v~lrrtK~~~~~gk~ 359 (674)
T KOG1001|consen 286 WCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNK------YKEGVKTLQGILKKVMLRRTKEMEVDGKP 359 (674)
T ss_pred eeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhh------HHHHHHHHHHHHHHHHhcccccccccCcc
Confidence 999999999999999999999999999999999999988874321 1567889999999999999996322
Q ss_pred -hcCCCceeEEEEecCCHHHHHHHHHHHHhHHHHH------HhhhcchhhHHHHHHHHHHHhCCCcccCCCCcccccccc
Q 000139 754 -KQLPMKQEHVIYCRLSKRQRNLYEDFIASSETQA------TLASANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMS 826 (2062)
Q Consensus 754 -kqLP~K~EhVV~c~LSkrQR~LYdd~is~~~t~~------~L~sgn~~silnvLmqLRKvCNHP~Lfe~r~i~S~f~~~ 826 (2062)
..|||+...++.|.++..++.+|..+......+. .....+|..++..+.+||++|+||.|+-.........
T Consensus 360 i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~~~~~~-- 437 (674)
T KOG1001|consen 360 ILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANEGTVSSTYAFFLKNLLRLRQACDHSLLVMYEMDSLGDS-- 437 (674)
T ss_pred ccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhhchhhhhHHHHHHHHHHHHHHccchHhhhhhhhccccc--
Confidence 3699999999999999999999999887655442 2234578889999999999999999863221000000
Q ss_pred cccccccccccccCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHhhhcccccccCCccccccccCC
Q 000139 827 GIDSQLSSSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVGPFCTHRKRLNG 906 (2062)
Q Consensus 827 ~~~~~l~s~~~~~l~~~~~~~~dl~~l~ll~~~le~~~~~~e~~e~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~~~g 906 (2062)
...+
T Consensus 438 ----------------------------------------------------------------------------~~~~ 441 (674)
T KOG1001|consen 438 ----------------------------------------------------------------------------GSAA 441 (674)
T ss_pred ----------------------------------------------------------------------------cccc
Confidence 0000
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhccchhhhhhccCh
Q 000139 907 TSIFEKIRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLSP 986 (2062)
Q Consensus 907 t~~~e~l~~~l~eer~~~~~~~~~~~~~~n~~rc~~~p~y~~~L~~ll~~~~p~~~~~~~~~~~~~~~~ss~L~~~v~s~ 986 (2062)
..... +..++... .++...|. .+..-+..+.|..|..|....-....
T Consensus 442 ~~~~~-------------~i~~l~~~-~~c~ic~~------~~~~~it~c~h~~c~~c~~~~i~~~~------------- 488 (674)
T KOG1001|consen 442 ALIIR-------------LIVDLSVS-HWCHICCD------LDSFFITRCGHDFCVECLKKSIQQSE------------- 488 (674)
T ss_pred hHHHH-------------HHHHHhhc-cccccccc------cccceeecccchHHHHHHHhcccccc-------------
Confidence 00000 00000000 12221111 11112233456655544322111100
Q ss_pred HHHHHHhhhhhhhhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhcccccCCccccccccc
Q 000139 987 VERFQRMIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQFDCG 1066 (2062)
Q Consensus 987 ~erl~~l~~lie~f~~~vp~~~ap~p~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~fPd~rLiq~dSG 1066 (2062)
.+++|.|+........+.. .. +...... ..+ .+.
T Consensus 489 ---------------------~~~~~~cr~~l~~~~l~s~------------~~---~~~~~~~---~~~-------~s~ 522 (674)
T KOG1001|consen 489 ---------------------NAPCPLCRNVLKEKKLLSA------------NP---LPSIIND---LLP-------ESS 522 (674)
T ss_pred ---------------------CCCCcHHHHHHHHHHHhhc------------cc---ccchhhh---ccc-------hhh
Confidence 0022222111000000000 00 0000000 000 478
Q ss_pred hHHHHHHHHHHhhhCCC-eEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccc
Q 000139 1067 KLQELAILLRKLKSDGH-RALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGG 1145 (2062)
Q Consensus 1067 KLq~L~~LLrkLks~Gh-KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG 1145 (2062)
|+..+..+|........ ++||||||+.+|++++..|...|+.|.+++|.++..+|...+..|+.++.+.|+|+|.++||
T Consensus 523 ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~ 602 (674)
T KOG1001|consen 523 KIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGK 602 (674)
T ss_pred hhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhh
Confidence 99999999986655555 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHh
Q 000139 1146 VGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQ 1215 (2062)
Q Consensus 1146 ~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~qKr~L~~~vIq 1215 (2062)
+||||+.|++||++||+|||+++.||++|||||||+|+|.|+||+..+||||+|++.++.|+.+...+..
T Consensus 603 ~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq~~K~~~~~~a~~ 672 (674)
T KOG1001|consen 603 VGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQEKKREYNASAFG 672 (674)
T ss_pred hhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999887764
No 17
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=6.3e-54 Score=505.09 Aligned_cols=423 Identities=27% Similarity=0.406 Sum_probs=330.2
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHC
Q 000139 518 PFLLKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWC 597 (2062)
Q Consensus 518 P~lLk~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw~ 597 (2062)
|+-|-..|.|||++||.+.+. ++...|||||||||||+|||++..+...+ +|.|||||+++...|..+|.+|+
T Consensus 192 d~kLvs~LlPFQreGv~faL~---RgGR~llADeMGLGKTiQAlaIA~yyraE----wplliVcPAsvrftWa~al~r~l 264 (689)
T KOG1000|consen 192 DPKLVSRLLPFQREGVIFALE---RGGRILLADEMGLGKTIQALAIARYYRAE----WPLLIVCPASVRFTWAKALNRFL 264 (689)
T ss_pred CHHHHHhhCchhhhhHHHHHh---cCCeEEEecccccchHHHHHHHHHHHhhc----CcEEEEecHHHhHHHHHHHHHhc
Confidence 444556799999999999876 46778999999999999999988877553 59999999999999999999999
Q ss_pred CCCe-EEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHcc--cC
Q 000139 598 PAFK-ILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNF--NS 674 (2062)
Q Consensus 598 P~lk-Vl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L--~a 674 (2062)
|... |.+..+....-.. -.....|.|.||+++......+...+|.+||+||+|++|+.++++.+++..+ .+
T Consensus 265 ps~~pi~vv~~~~D~~~~------~~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~a 338 (689)
T KOG1000|consen 265 PSIHPIFVVDKSSDPLPD------VCTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVA 338 (689)
T ss_pred ccccceEEEecccCCccc------cccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhccchhhhhhhhhHHHHh
Confidence 9754 3444443322110 1122459999999999999999999999999999999999999999998877 68
Q ss_pred ceEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCcccccccccHHHHHHHHHhhhh-hhhhhhhhhHh
Q 000139 675 KRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRP-FILRRLKRDVE 753 (2062)
Q Consensus 675 ~~RLLLTGTPLQNsL~ELwSLL~FL~P~iF~s~~eFkewFsnPisg~~eg~~~~n~~~i~rLhkvLrp-FmLRRtK~DVe 753 (2062)
.+.+||||||--....|||..+..+.+.+|..+.+|-..||+--. +....+...-.+...|+-+|.. .|+||+|.+|.
T Consensus 339 khvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~-vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL 417 (689)
T KOG1000|consen 339 KHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQ-VRFCFDYKGCTNLEELAALLFKRLMIRRLKADVL 417 (689)
T ss_pred hheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccc-cceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999997432 1223333344566788888865 58999999999
Q ss_pred hcCCCceeEEEEecCCHHHHHHHHHHHHhHHHHHHhhhcchhhHHHHHHHHHHHhCCCcccCCCCccccccccccccccc
Q 000139 754 KQLPMKQEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMSGIDSQLS 833 (2062)
Q Consensus 754 kqLP~K~EhVV~c~LSkrQR~LYdd~is~~~t~~~L~sgn~~silnvLmqLRKvCNHP~Lfe~r~i~S~f~~~~~~~~l~ 833 (2062)
+|||+|...|++ -..+++-+.-+++...... +... + .|+-.+.| |
T Consensus 418 ~qLPpKrr~Vv~-~~~gr~da~~~~lv~~a~~------~t~~---~-~~e~~~~~----l-------------------- 462 (689)
T KOG1000|consen 418 KQLPPKRREVVY-VSGGRIDARMDDLVKAAAD------YTKV---N-SMERKHES----L-------------------- 462 (689)
T ss_pred hhCCccceEEEE-EcCCccchHHHHHHHHhhh------cchh---h-hhhhhhHH----H--------------------
Confidence 999999555444 3444443333333221110 0000 0 00000000 0
Q ss_pred ccccccCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHhhhcccccccCCccccccccCCchHHHHH
Q 000139 834 SSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVGPFCTHRKRLNGTSIFEKI 913 (2062)
Q Consensus 834 s~~~~~l~~~~~~~~dl~~l~ll~~~le~~~~~~e~~e~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~~~gt~~~e~l 913 (2062)
T Consensus 463 -------------------------------------------------------------------------------- 462 (689)
T KOG1000|consen 463 -------------------------------------------------------------------------------- 462 (689)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhccchhhhhhccChHHHHHHh
Q 000139 914 RKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLSPVERFQRM 993 (2062)
Q Consensus 914 ~~~l~eer~~~~~~~~~~~~~~n~~rc~~~p~y~~~L~~ll~~~~p~~~~~~~~~~~~~~~~ss~L~~~v~s~~erl~~l 993 (2062)
+.+++.
T Consensus 463 ------------------~l~y~~-------------------------------------------------------- 468 (689)
T KOG1000|consen 463 ------------------LLFYSL-------------------------------------------------------- 468 (689)
T ss_pred ------------------HHHHHH--------------------------------------------------------
Confidence 000000
Q ss_pred hhhhhhhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhcccccCCccccccccchHHHHHH
Q 000139 994 IGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQFDCGKLQELAI 1073 (2062)
Q Consensus 994 ~~lie~f~~~vp~~~ap~p~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~fPd~rLiq~dSGKLq~L~~ 1073 (2062)
..-.|+..+.+
T Consensus 469 ---------------------------------------------------------------------tgiaK~~av~e 479 (689)
T KOG1000|consen 469 ---------------------------------------------------------------------TGIAKAAAVCE 479 (689)
T ss_pred ---------------------------------------------------------------------hcccccHHHHH
Confidence 00012222222
Q ss_pred HHHH----hhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccC
Q 000139 1074 LLRK----LKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGIN 1149 (2062)
Q Consensus 1074 LLrk----Lks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLN 1149 (2062)
.|.. .-+.+.|+|||.....|||-|+.+++.+++.++||||+|+...|+.+++.|+.+.++.|-|||..+||+||+
T Consensus 480 yi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt 559 (689)
T KOG1000|consen 480 YILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLT 559 (689)
T ss_pred HHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeeccccee
Confidence 2222 234678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHH
Q 000139 1150 LVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDL 1212 (2062)
Q Consensus 1150 LT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~qKr~L~~~ 1212 (2062)
|++|+.|+|.+.+|||....||.||+||||||--|.||+||+++|++|.+|.+.++|......
T Consensus 560 ~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s 622 (689)
T KOG1000|consen 560 LTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLGS 622 (689)
T ss_pred eeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999875543
No 18
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=3.3e-52 Score=549.65 Aligned_cols=432 Identities=20% Similarity=0.242 Sum_probs=325.4
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCC
Q 000139 521 LKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAF 600 (2062)
Q Consensus 521 Lk~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw~P~l 600 (2062)
.+..|.|||+..+.++... ...+.||||||||||||+|++++..+.. .|..+|+|||||++|+.||..|+.+|+. +
T Consensus 149 ~~~~l~pHQl~~~~~vl~~--~~~R~LLADEvGLGKTIeAglil~~l~~-~g~~~rvLIVvP~sL~~QW~~El~~kF~-l 224 (956)
T PRK04914 149 ARASLIPHQLYIAHEVGRR--HAPRVLLADEVGLGKTIEAGMIIHQQLL-TGRAERVLILVPETLQHQWLVEMLRRFN-L 224 (956)
T ss_pred CCCCCCHHHHHHHHHHhhc--cCCCEEEEeCCcCcHHHHHHHHHHHHHH-cCCCCcEEEEcCHHHHHHHHHHHHHHhC-C
Confidence 3567999999999887664 3567899999999999999998887754 5777899999999999999999987763 5
Q ss_pred eEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhch---hhhhccCeeEEEEcCccccCC---hhhHHHHHHHcc--
Q 000139 601 KILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDS---KVFKRKKWKYLILDEAHLIKN---WKSQRWQTLLNF-- 672 (2062)
Q Consensus 601 kVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~---~~L~r~~W~lVILDEAH~IKN---~~Sk~~qaL~~L-- 672 (2062)
.+.+|.+..-... ...+......++++|+||..+.++. ..+....|++|||||||+++| ..|+.++.+..+
T Consensus 225 ~~~i~~~~~~~~~-~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~ 303 (956)
T PRK04914 225 RFSLFDEERYAEA-QHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAE 303 (956)
T ss_pred CeEEEcCcchhhh-cccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhh
Confidence 5555554432211 1111112235789999999999754 446677999999999999995 357778998887
Q ss_pred cCceEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcC--CCCCcc----cccccccH----------------
Q 000139 673 NSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCN--PISGMV----EGQEKVNK---------------- 730 (2062)
Q Consensus 673 ~a~~RLLLTGTPLQNsL~ELwSLL~FL~P~iF~s~~eFkewFsn--Pisg~~----eg~~~~n~---------------- 730 (2062)
+++++|||||||+||++.|+|++|+||+|+.|.++..|....+. |+...+ .+. ..+.
T Consensus 304 ~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~-~~~~~~~~~l~~ll~~~~~~ 382 (956)
T PRK04914 304 VIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGE-KLSDDALNALGELLGEQDIE 382 (956)
T ss_pred ccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCC-cCCHHHHHHHHHHhcccchh
Confidence 67899999999999999999999999999999999999875542 221000 000 0000
Q ss_pred ------------------HHHHHHHH--hhhhhhhhhhhhhHhhcCCCceeEEEEecCCHHHHHHHHHHHHhHHHHHHhh
Q 000139 731 ------------------EVVDRLHN--VLRPFILRRLKRDVEKQLPMKQEHVIYCRLSKRQRNLYEDFIASSETQATLA 790 (2062)
Q Consensus 731 ------------------~~i~rLhk--vLrpFmLRRtK~DVekqLP~K~EhVV~c~LSkrQR~LYdd~is~~~t~~~L~ 790 (2062)
..+..|.. -...+|+|+++.+|. .+|.+..+.+.+++... |...+..
T Consensus 383 ~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~-~fp~R~~~~~~l~~~~~----y~~~~~~-------- 449 (956)
T PRK04914 383 PLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVK-GFPKRELHPIPLPLPEQ----YQTAIKV-------- 449 (956)
T ss_pred HHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhc-CCCcCceeEeecCCCHH----HHHHHHH--------
Confidence 11111110 123688999999986 59999999999999764 3322211
Q ss_pred hcchhhHHHHHHHHHHHhCCCcccCCCCcccccccccccccccccccccCCCCCCcchhhccccccccccccccCccchh
Q 000139 791 SANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMSGIDSQLSSSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESD 870 (2062)
Q Consensus 791 sgn~~silnvLmqLRKvCNHP~Lfe~r~i~S~f~~~~~~~~l~s~~~~~l~~~~~~~~dl~~l~ll~~~le~~~~~~e~~ 870 (2062)
.....+++ |.+|.-
T Consensus 450 --------~~~~~~~~-~l~pe~--------------------------------------------------------- 463 (956)
T PRK04914 450 --------SLEARARD-MLYPEQ--------------------------------------------------------- 463 (956)
T ss_pred --------hHHHHHHh-hcCHHH---------------------------------------------------------
Confidence 00011111 111100
Q ss_pred hhhhhcCchhHHHHhhhcccccccCCccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhh
Q 000139 871 ELNAIATPASLIKERADLNNLEEVGPFCTHRKRLNGTSIFEKIRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSL 950 (2062)
Q Consensus 871 e~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~~~gt~~~e~l~~~l~eer~~~~~~~~~~~~~~n~~rc~~~p~y~~~L 950 (2062)
++.
T Consensus 464 --------------------------------------~~~--------------------------------------- 466 (956)
T PRK04914 464 --------------------------------------IYQ--------------------------------------- 466 (956)
T ss_pred --------------------------------------HHH---------------------------------------
Confidence 000
Q ss_pred HhHhhcCCcchhhhhhhhhhhhhccchhhhhhccChHHHHHHhhhhhhhhhhcccccCCCCCccccCCCCCccccccchh
Q 000139 951 RELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLSPVERFQRMIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYK 1030 (2062)
Q Consensus 951 ~~ll~~~~p~~~~~~~~~~~~~~~~ss~L~~~v~s~~erl~~l~~lie~f~~~vp~~~ap~p~~~~~~~~~~~~l~~~~~ 1030 (2062)
.+. ... .
T Consensus 467 -----------------------------------------~~~-~~~---------------~---------------- 473 (956)
T PRK04914 467 -----------------------------------------EFE-DNA---------------T---------------- 473 (956)
T ss_pred -----------------------------------------HHh-hhh---------------h----------------
Confidence 000 000 0
Q ss_pred hhhccccCCCCCCchhhhhhcccccCCccccccccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHH-HHcCCcE
Q 000139 1031 EKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFI-SLYGYTY 1109 (2062)
Q Consensus 1031 ~~~~~~l~~~l~~l~~~~~~~~~~fPd~rLiq~dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L-~~~Gi~y 1109 (2062)
.....+|+..|..+|+.+. +.|||||+++..+++.|...| ...|+++
T Consensus 474 ------------------------------~~~~d~Ki~~L~~~L~~~~--~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~ 521 (956)
T PRK04914 474 ------------------------------WWNFDPRVEWLIDFLKSHR--SEKVLVICAKAATALQLEQALREREGIRA 521 (956)
T ss_pred ------------------------------ccccCHHHHHHHHHHHhcC--CCeEEEEeCcHHHHHHHHHHHhhccCeeE
Confidence 0012468999999998763 789999999999999999999 6789999
Q ss_pred EEecCCCCHHHHHHHHHHHhcCC-CceEEEEeccccccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEE
Q 000139 1110 MRLDGSTQPEERQTLMQRFNTNP-KIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYR 1188 (2062)
Q Consensus 1110 ~RLDGsTs~eqRq~lmerFN~D~-~IfVfLLSTrAGG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYR 1188 (2062)
+.|+|+++..+|++++++|+.+. .++| |++|.+||+||||+.|++||+||+||||....||+||+|||||+++|.||+
T Consensus 522 ~~ihG~~s~~eR~~~~~~F~~~~~~~~V-LIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~ 600 (956)
T PRK04914 522 AVFHEGMSIIERDRAAAYFADEEDGAQV-LLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHV 600 (956)
T ss_pred EEEECCCCHHHHHHHHHHHhcCCCCccE-EEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEE
Confidence 99999999999999999999753 6666 567899999999999999999999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 000139 1189 LISESTIEENILKKANQKRALDDLVIQSGGYN 1220 (2062)
Q Consensus 1189 LIse~TIEE~Ilkka~qKr~L~~~vIq~g~ft 1220 (2062)
++.++|+++.|++...+|..+.+.++..|..-
T Consensus 601 ~~~~~t~~e~i~~~~~~~l~ife~~~~~~~~v 632 (956)
T PRK04914 601 PYLEGTAQERLFRWYHEGLNAFEHTCPTGRAL 632 (956)
T ss_pred ccCCCCHHHHHHHHHhhhcCceeccCCCHHHH
Confidence 99999999999999999998888888665543
No 19
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=6.1e-53 Score=532.15 Aligned_cols=383 Identities=41% Similarity=0.675 Sum_probs=341.0
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCeE
Q 000139 523 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKI 602 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw~P~lkV 602 (2062)
++|.+||.+|++||...+..+..+|||||||||||+|+|.|+..+.......||+||++|.+++.||.+++..|+|.+.+
T Consensus 294 g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~sT~~nwe~e~~~wap~~~v 373 (696)
T KOG0383|consen 294 GTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPLSTIVNWEREFELWAPSFYV 373 (696)
T ss_pred ccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCCCCCceeeccCccccCCCCchhccCCCccc
Confidence 89999999999999999999999999999999999999999999998888889999999999999999999999999999
Q ss_pred EEEeCChhhHHhhhhccC-------------------CCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhh
Q 000139 603 LTYFGSAKERKFKRQGWL-------------------KPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKS 663 (2062)
Q Consensus 603 l~y~Gs~kerk~~r~gw~-------------------k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~S 663 (2062)
.+|+|..+.+...+.--. ..-.|+|.+++|++...+...+..+.|.++|+||+|+|||..|
T Consensus 374 v~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~~~il~~v~w~~livde~~rlkn~~s 453 (696)
T KOG0383|consen 374 VPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEIDQSILFSVQWGLLIVDEAHRLKNKQS 453 (696)
T ss_pred ccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccCHHHHhhhhcceeEeechhhcccchh
Confidence 999999998876654211 1235899999999999999999999999999999999999999
Q ss_pred HHHHHHHcccCceEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCcccccccccHHHHHHHHHhhhhh
Q 000139 664 QRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPF 743 (2062)
Q Consensus 664 k~~qaL~~L~a~~RLLLTGTPLQNsL~ELwSLL~FL~P~iF~s~~eFkewFsnPisg~~eg~~~~n~~~i~rLhkvLrpF 743 (2062)
.+.+.+......+++||||||+||++.+|++|||||.|..|.+...|.+.|.. ....+.++.||.++.|+
T Consensus 454 ~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d----------~~~~~~~~~l~~l~~p~ 523 (696)
T KOG0383|consen 454 KRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHD----------ISCEEQIKKLHLLLCPH 523 (696)
T ss_pred hhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcch----------hhHHHHHHhhccccCch
Confidence 99999999999999999999999999999999999999999999999887754 34567899999999999
Q ss_pred hhhhhhhhHhhcCCCceeEEEEecCCHHHHHHHHHHHHhHHHHHHhhhcchhhHHHHHHHHHHHhCCCcccCCCCccccc
Q 000139 744 ILRRLKRDVEKQLPMKQEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISVIMQLRKVCNHPDLFEGRPIVSSF 823 (2062)
Q Consensus 744 mLRRtK~DVekqLP~K~EhVV~c~LSkrQR~LYdd~is~~~t~~~L~sgn~~silnvLmqLRKvCNHP~Lfe~r~i~S~f 823 (2062)
||||.|.||.+.+|.|++-++.+.|++.|+.+|..++.+.- ...++.++..+++|++|+|||+||||++|..+....
T Consensus 524 ~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~-~~l~~~~~~~s~~n~~mel~K~~~hpy~~~~~e~~~-- 600 (696)
T KOG0383|consen 524 MLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNW-QGLLAGVHQYSLLNIVMELRKQCNHPYLSPLEEPLE-- 600 (696)
T ss_pred hhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCCh-HHHhhcchhHHHHHHHHHHHHhhcCcccCccccccc--
Confidence 99999999999999999999999999999999998876543 344558889999999999999999999974310000
Q ss_pred ccccccccccccccccCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHhhhcccccccCCccccccc
Q 000139 824 DMSGIDSQLSSSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVGPFCTHRKR 903 (2062)
Q Consensus 824 ~~~~~~~~l~s~~~~~l~~~~~~~~dl~~l~ll~~~le~~~~~~e~~e~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~ 903 (2062)
T Consensus 601 -------------------------------------------------------------------------------- 600 (696)
T KOG0383|consen 601 -------------------------------------------------------------------------------- 600 (696)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhccchhhhhhc
Q 000139 904 LNGTSIFEKIRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSKLADIV 983 (2062)
Q Consensus 904 ~~gt~~~e~l~~~l~eer~~~~~~~~~~~~~~n~~rc~~~p~y~~~L~~ll~~~~p~~~~~~~~~~~~~~~~ss~L~~~v 983 (2062)
.++.
T Consensus 601 ~~~~---------------------------------------------------------------------------- 604 (696)
T KOG0383|consen 601 ENGE---------------------------------------------------------------------------- 604 (696)
T ss_pred cchH----------------------------------------------------------------------------
Confidence 0000
Q ss_pred cChHHHHHHhhhhhhhhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhcccccCCcccccc
Q 000139 984 LSPVERFQRMIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQF 1063 (2062)
Q Consensus 984 ~s~~erl~~l~~lie~f~~~vp~~~ap~p~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~fPd~rLiq~ 1063 (2062)
.+.. -+.-
T Consensus 605 --------~~~~----------------------------------------------------------------~l~k 612 (696)
T KOG0383|consen 605 --------YLGS----------------------------------------------------------------ALIK 612 (696)
T ss_pred --------HHHH----------------------------------------------------------------HHHH
Confidence 0000 0011
Q ss_pred ccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhc-CCCceEEEEecc
Q 000139 1064 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNT-NPKIFLFILSTR 1142 (2062)
Q Consensus 1064 dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~-D~~IfVfLLSTr 1142 (2062)
.|||+..|..+++++++.|||||||+||+.|||+|+.+|.+.| .|.||||+.....||.++++||. ++.-||||+|||
T Consensus 613 ~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstr 691 (696)
T KOG0383|consen 613 ASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTR 691 (696)
T ss_pred HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecc
Confidence 3799999999999999999999999999999999999999999 99999999999999999999995 788999999999
Q ss_pred ccccc
Q 000139 1143 SGGVG 1147 (2062)
Q Consensus 1143 AGG~G 1147 (2062)
+||+|
T Consensus 692 a~g~g 696 (696)
T KOG0383|consen 692 AGGLG 696 (696)
T ss_pred cccCC
Confidence 99998
No 20
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=1.1e-43 Score=420.53 Aligned_cols=277 Identities=39% Similarity=0.701 Sum_probs=231.3
Q ss_pred HHHHHHHHHHHHh---------hcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCC--cEEEEecCCcHHHHHHHHHHH
Q 000139 528 YQHIGLDWLVTMY---------EKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWG--PHLIVVPTSVMLNWETEFLKW 596 (2062)
Q Consensus 528 YQ~~GL~WLv~l~---------~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~G--p~LIVvPtSLL~QW~~Efkkw 596 (2062)
||+.||+||+.++ ....|||||||||+|||+++|+++.++.......+ ++|||||.+++.||..||.+|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~~ 80 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEKW 80 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhccc
Confidence 8999999999998 77889999999999999999999998876544443 699999999999999999999
Q ss_pred C-C-CCeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhh-----hchhhhhccCeeEEEEcCccccCChhhHHHHHH
Q 000139 597 C-P-AFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLII-----QDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTL 669 (2062)
Q Consensus 597 ~-P-~lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~-----~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL 669 (2062)
+ | .+++++|.|....+... ......++|+||||+.+. .....+...+|++||+||+|++||..+..++++
T Consensus 81 ~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~~~l 157 (299)
T PF00176_consen 81 FDPDSLRVIIYDGDSERRRLS---KNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKRYKAL 157 (299)
T ss_dssp SGT-TS-EEEESSSCHHHHTT---SSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHHHHHH
T ss_pred ccccccccccccccccccccc---ccccccceeeeccccccccccccccccccccccceeEEEecccccccccccccccc
Confidence 9 4 68999999887332222 223467899999999999 667788889999999999999999999999999
Q ss_pred HcccCceEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCcccccccccHHHHHHHHHhhhhhhhhhhh
Q 000139 670 LNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRRLK 749 (2062)
Q Consensus 670 ~~L~a~~RLLLTGTPLQNsL~ELwSLL~FL~P~iF~s~~eFkewFsnPisg~~eg~~~~n~~~i~rLhkvLrpFmLRRtK 749 (2062)
..+++.+||+|||||++|++.|||++++||.|+.+.....|.++|.++ ..........+|..++++|++||++
T Consensus 158 ~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~-------~~~~~~~~~~~L~~~l~~~~~r~~~ 230 (299)
T PF00176_consen 158 RKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRP-------DKENSYENIERLRELLSEFMIRRTK 230 (299)
T ss_dssp HCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHH-------HHTHHHHHHHHHHHHHCCCEECHCG
T ss_pred cccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhh-------ccccccccccccccccchhhhhhhc
Confidence 999999999999999999999999999999999999999999998665 2334566788999999999999999
Q ss_pred hhHhhcCCCceeEEEEecCCHHHHHHHHHHHHhHHHHH----HhhhcchhhHHHHHHHHHHHhCCCccc
Q 000139 750 RDVEKQLPMKQEHVIYCRLSKRQRNLYEDFIASSETQA----TLASANFFGMISVIMQLRKVCNHPDLF 814 (2062)
Q Consensus 750 ~DVekqLP~K~EhVV~c~LSkrQR~LYdd~is~~~t~~----~L~sgn~~silnvLmqLRKvCNHP~Lf 814 (2062)
.++...||++.++++.|+||+.|+.+|+++........ ....++...++..+++|||+||||+|+
T Consensus 231 ~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~hp~l~ 299 (299)
T PF00176_consen 231 KDVEKELPPKIEHVINVELSPEQRELYNELLKEARENLKQSSRKKSKKLSSLLQILKRLRQVCNHPYLV 299 (299)
T ss_dssp GGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T--TCHHHHHHHHHHHHHHHHHH-THHC
T ss_pred ccccccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHhCCcccC
Confidence 99988999999999999999999999998876554321 124467788999999999999999873
No 21
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=100.00 E-value=7.6e-39 Score=410.19 Aligned_cols=261 Identities=23% Similarity=0.355 Sum_probs=203.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHh---------------cCCCCcEEEEecCCcHHHHHHHHHHHCCCC-eEEEEe
Q 000139 543 RLNGILADEMGLGKTIMTIAMLAHLACE---------------KGIWGPHLIVVPTSVMLNWETEFLKWCPAF-KILTYF 606 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIALLa~L~~~---------------~g~~Gp~LIVvPtSLL~QW~~Efkkw~P~l-kVl~y~ 606 (2062)
+..+++||+||+|||...+++..+.... ....|.+|||||.+++.||-.||.++++.+ +++.|.
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv~~Y~ 453 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSLLKVLLYF 453 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccccceEEEEe
Confidence 3356999999999999998887653211 012488999999999999999999999876 999999
Q ss_pred CChhhHHhhhhccCCCCCceEEEEehhhhhhch----------------------hhhhccCeeEEEEcCccccCChhhH
Q 000139 607 GSAKERKFKRQGWLKPNSFHVCITTYRLIIQDS----------------------KVFKRKKWKYLILDEAHLIKNWKSQ 664 (2062)
Q Consensus 607 Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~----------------------~~L~r~~W~lVILDEAH~IKN~~Sk 664 (2062)
|-.+.-.... ....+||||+|||.+++.+. ..|..+.|++|||||||.+....|.
T Consensus 454 Girk~~~~~~---~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvesssS~ 530 (1394)
T KOG0298|consen 454 GIRKTFWLSP---FELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESSSSA 530 (1394)
T ss_pred chhhhcccCc---hhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcchHHH
Confidence 9865432222 23368999999999998762 2255567999999999999999999
Q ss_pred HHHHHHcccCceEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCcccccccccHHHHHHHHHhhhhhh
Q 000139 665 RWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFI 744 (2062)
Q Consensus 665 ~~qaL~~L~a~~RLLLTGTPLQNsL~ELwSLL~FL~P~iF~s~~eFkewFsnPisg~~eg~~~~n~~~i~rLhkvLrpFm 744 (2062)
.++.+..|++.+||++||||+|+ +.+|+.||.||.-++|.....|.+....+. .....-..++.++...+
T Consensus 531 ~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~---------~~ra~~~~~~dl~~q~l 600 (1394)
T KOG0298|consen 531 AAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAY---------QLRAKCEPLLDLFKQLL 600 (1394)
T ss_pred HHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHH---------HHHhhhhhHHHHHHhhh
Confidence 99999999999999999999999 999999999999999999999987664432 11133347899999999
Q ss_pred hhhhhhhHhh--cCCCceeEEEEecCCHHHHHHHHHH----HHhH-HHHHHhh-------h-------cchhhHHHHHHH
Q 000139 745 LRRLKRDVEK--QLPMKQEHVIYCRLSKRQRNLYEDF----IASS-ETQATLA-------S-------ANFFGMISVIMQ 803 (2062)
Q Consensus 745 LRRtK~DVek--qLP~K~EhVV~c~LSkrQR~LYdd~----is~~-~t~~~L~-------s-------gn~~silnvLmq 803 (2062)
.|+.|.+|+. ++||..+.+....+++.+-.+|+.. .... ..-..+. + .....+++.+.+
T Consensus 601 ~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~~~~a~i~~~l~r 680 (1394)
T KOG0298|consen 601 WRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSPQLLAIILKWLLR 680 (1394)
T ss_pred hhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCChhhHHHHHHHHHH
Confidence 9999999977 6899988888888888877776532 2211 1111221 1 113457899999
Q ss_pred HHHHhCCCcccCC
Q 000139 804 LRKVCNHPDLFEG 816 (2062)
Q Consensus 804 LRKvCNHP~Lfe~ 816 (2062)
||++|+||..+..
T Consensus 681 LRq~Cchplv~~~ 693 (1394)
T KOG0298|consen 681 LRQACCHPLVGNS 693 (1394)
T ss_pred HHHhhcccccccC
Confidence 9999999987644
No 22
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.1e-35 Score=379.86 Aligned_cols=342 Identities=21% Similarity=0.383 Sum_probs=254.5
Q ss_pred CCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCc-HHHHHHHHHHHC--C
Q 000139 522 KFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSV-MLNWETEFLKWC--P 598 (2062)
Q Consensus 522 k~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSL-L~QW~~Efkkw~--P 598 (2062)
...|||||.+++.|+... ....+|||...||+|||+++|++++.+ .+++|||||+++ +.||..+|.+|+ +
T Consensus 253 ~~~LRpYQ~eAl~~~~~~-gr~r~GIIvLPtGaGKTlvai~aa~~l------~k~tLILvps~~Lv~QW~~ef~~~~~l~ 325 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVTAACTV------KKSCLVLCTSAVSVEQWKQQFKMWSTID 325 (732)
T ss_pred CCCcCHHHHHHHHHHHhc-CCCCCcEEEeCCCCChHHHHHHHHHHh------CCCEEEEeCcHHHHHHHHHHHHHhcCCC
Confidence 478999999999988541 112589999999999999999988765 258999999874 889999999997 4
Q ss_pred CCeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhc----------hhhhhccCeeEEEEcCccccCChhhHHHHH
Q 000139 599 AFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQD----------SKVFKRKKWKYLILDEAHLIKNWKSQRWQT 668 (2062)
Q Consensus 599 ~lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d----------~~~L~r~~W~lVILDEAH~IKN~~Sk~~qa 668 (2062)
...+..|.|..+... .....|+||||+++... ...|....|++||+||||++.+ ....+.
T Consensus 326 ~~~I~~~tg~~k~~~--------~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA--~~fr~i 395 (732)
T TIGR00603 326 DSQICRFTSDAKERF--------HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA--AMFRRV 395 (732)
T ss_pred CceEEEEecCccccc--------ccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH--HHHHHH
Confidence 567778888654321 13467999999998643 1335556899999999999964 334446
Q ss_pred HHcccCceEEEEeccCCCCChHHHHHHHHHh-CCCCCCChHHHHHHhcCCCCCcccccccccHHHHHHHHHhhhhhhhhh
Q 000139 669 LLNFNSKRRILLTGTPLQNDLMELWSLMHFL-MPHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRR 747 (2062)
Q Consensus 669 L~~L~a~~RLLLTGTPLQNsL~ELwSLL~FL-~P~iF~s~~eFkewFsnPisg~~eg~~~~n~~~i~rLhkvLrpFmLRR 747 (2062)
+..+++.+||+|||||++++ +.+..+.|| .|.+|.-
T Consensus 396 l~~l~a~~RLGLTATP~ReD--~~~~~L~~LiGP~vye~----------------------------------------- 432 (732)
T TIGR00603 396 LTIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYEA----------------------------------------- 432 (732)
T ss_pred HHhcCcCcEEEEeecCcccC--CchhhhhhhcCCeeeec-----------------------------------------
Confidence 66789999999999999876 345555554 3333211
Q ss_pred hhhhHh--hcCCCceeEEEEecCCHHHHHHHHHHHHhHHHHHHhhhcchhhHHHHHHHHHHHhCCCcccCCCCccccccc
Q 000139 748 LKRDVE--KQLPMKQEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDM 825 (2062)
Q Consensus 748 tK~DVe--kqLP~K~EhVV~c~LSkrQR~LYdd~is~~~t~~~L~sgn~~silnvLmqLRKvCNHP~Lfe~r~i~S~f~~ 825 (2062)
.-.++. ..|.+...+.|+|+|++.. |..++.... +.+..
T Consensus 433 ~~~eLi~~G~LA~~~~~ev~v~~t~~~---~~~yl~~~~------------------~~k~~------------------ 473 (732)
T TIGR00603 433 NWMELQKKGFIANVQCAEVWCPMTPEF---YREYLRENS------------------RKRML------------------ 473 (732)
T ss_pred CHHHHHhCCccccceEEEEEecCCHHH---HHHHHHhcc------------------hhhhH------------------
Confidence 111111 1355556677999999863 333221000 00000
Q ss_pred ccccccccccccccCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHhhhcccccccCCccccccccC
Q 000139 826 SGIDSQLSSSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVGPFCTHRKRLN 905 (2062)
Q Consensus 826 ~~~~~~l~s~~~~~l~~~~~~~~dl~~l~ll~~~le~~~~~~e~~e~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~~~ 905 (2062)
T Consensus 474 -------------------------------------------------------------------------------- 473 (732)
T TIGR00603 474 -------------------------------------------------------------------------------- 473 (732)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhccchhhhhhccC
Q 000139 906 GTSIFEKIRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLS 985 (2062)
Q Consensus 906 gt~~~e~l~~~l~eer~~~~~~~~~~~~~~n~~rc~~~p~y~~~L~~ll~~~~p~~~~~~~~~~~~~~~~ss~L~~~v~s 985 (2062)
T Consensus 474 -------------------------------------------------------------------------------- 473 (732)
T TIGR00603 474 -------------------------------------------------------------------------------- 473 (732)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHhhhhhhhhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhcccccCCcccccccc
Q 000139 986 PVERFQRMIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQFDC 1065 (2062)
Q Consensus 986 ~~erl~~l~~lie~f~~~vp~~~ap~p~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~fPd~rLiq~dS 1065 (2062)
+.....
T Consensus 474 --------------------------------------------------------------------------l~~~np 479 (732)
T TIGR00603 474 --------------------------------------------------------------------------LYVMNP 479 (732)
T ss_pred --------------------------------------------------------------------------HhhhCh
Confidence 000012
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccc
Q 000139 1066 GKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGG 1145 (2062)
Q Consensus 1066 GKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG 1145 (2062)
.|+.++..||+.....|+|+|||++++..++.+...| |. ..|+|.|+..+|..++++|+.++.+.|+++ |++|+
T Consensus 480 ~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~~--~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~-SkVgd 553 (732)
T TIGR00603 480 NKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL---GK--PFIYGPTSQQERMQILQNFQHNPKVNTIFL-SKVGD 553 (732)
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---CC--ceEECCCCHHHHHHHHHHHHhCCCccEEEE-ecccc
Confidence 4777777888776678999999999998888777766 43 448999999999999999987677777555 59999
Q ss_pred cccCcccCCEEEEecCCC-ChhhHHHHHHhhhccCCcCc-----EEEEEEEeCCCHHHHHHHH
Q 000139 1146 VGINLVGADTVIFYDSDW-NPAMDQQAQDRCHRIGQTRE-----VHIYRLISESTIEENILKK 1202 (2062)
Q Consensus 1146 ~GLNLT~ADtVIfyD~dW-NPa~d~QA~gRahRIGQTRd-----V~VYRLIse~TIEE~Ilkk 1202 (2062)
+||||+.|++||++++++ ++...+||.||+.|.|..+. .++|.||+.+|.|+.+-.+
T Consensus 554 eGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~ 616 (732)
T TIGR00603 554 TSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTK 616 (732)
T ss_pred cccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHH
Confidence 999999999999999986 99999999999999997653 7999999999999998654
No 23
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=2.3e-30 Score=346.35 Aligned_cols=460 Identities=19% Similarity=0.243 Sum_probs=287.2
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCC--C
Q 000139 523 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCP--A 599 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw~P--~ 599 (2062)
..+|+||...+..++. .|+|+++++|+|||++++.++..+.. ...+++|||||+ .++.||..+|++++. .
T Consensus 14 ~~~r~yQ~~~~~~~l~-----~n~lv~~ptG~GKT~~a~~~i~~~l~--~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~ 86 (773)
T PRK13766 14 IEARLYQQLLAATALK-----KNTLVVLPTGLGKTAIALLVIAERLH--KKGGKVLILAPTKPLVEQHAEFFRKFLNIPE 86 (773)
T ss_pred CCccHHHHHHHHHHhc-----CCeEEEcCCCccHHHHHHHHHHHHHH--hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCC
Confidence 4689999998877654 28999999999999999988887653 344799999999 688999999998864 3
Q ss_pred CeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhch--hhhhccCeeEEEEcCccccCChhhHHHHHHH---cccC
Q 000139 600 FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDS--KVFKRKKWKYLILDEAHLIKNWKSQRWQTLL---NFNS 674 (2062)
Q Consensus 600 lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~--~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~---~L~a 674 (2062)
.++..++|...... ...-| ...+|+|+|++++..+. ..+....|++|||||||++.+..+..+.+-. ..+.
T Consensus 87 ~~v~~~~g~~~~~~-r~~~~---~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~ 162 (773)
T PRK13766 87 EKIVVFTGEVSPEK-RAELW---EKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKN 162 (773)
T ss_pred ceEEEEeCCCCHHH-HHHHH---hCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCC
Confidence 48888888654332 11223 24679999999998764 2233457999999999999875544433222 1245
Q ss_pred ceEEEEeccCCCCChHHHHHHHHHhCCCCCCC----hHHHHHHhcCCCCCcccccccccHHHHHHHHHhhhhhhhhhhhh
Q 000139 675 KRRILLTGTPLQNDLMELWSLMHFLMPHIFQS----HQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRRLKR 750 (2062)
Q Consensus 675 ~~RLLLTGTPLQNsL~ELwSLL~FL~P~iF~s----~~eFkewFsnPisg~~eg~~~~n~~~i~rLhkvLrpFmLRRtK~ 750 (2062)
.++++|||||.++ ...+..+++-|....+.. +..+..++..+- +.-....-......++..|..++.+|.+.
T Consensus 163 ~~il~lTaTP~~~-~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~---v~~~~v~l~~~~~~i~~~l~~~~~~~l~~ 238 (773)
T PRK13766 163 PLVLGLTASPGSD-EEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVK---IEWVRVELPEELKEIRDLLNEALKDRLKK 238 (773)
T ss_pred CEEEEEEcCCCCC-HHHHHHHHHhCCceEEEEcCCCChhHHhhhccce---eEEEEeCCcHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999876 566666676664332211 123333332111 00001112344567889999999888876
Q ss_pred hHhhc-CCCceeEEEEecCCHHHHHHHHHHHHhHHHHHHhhhcchhhHHHHHHHHHHHhCCCcccCCCCccccccccccc
Q 000139 751 DVEKQ-LPMKQEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMSGID 829 (2062)
Q Consensus 751 DVekq-LP~K~EhVV~c~LSkrQR~LYdd~is~~~t~~~L~sgn~~silnvLmqLRKvCNHP~Lfe~r~i~S~f~~~~~~ 829 (2062)
..... +++....+....+...++.++..+..... .......++..++.|++. ..+.+..
T Consensus 239 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~l~~~---~~~l~~~------------ 298 (773)
T PRK13766 239 LKELGVIVSISPDVSKKELLGLQKKLQQEIANDDS-----EGYEAISILAEAMKLRHA---VELLETQ------------ 298 (773)
T ss_pred HHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCch-----HHHHHHHHHHHHHHHHHH---HHHHHHh------------
Confidence 55332 22222222233333334333332221100 000111222223333321 1110000
Q ss_pred ccccccccccCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHhhhcccccccCCccccccccCCchH
Q 000139 830 SQLSSSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVGPFCTHRKRLNGTSI 909 (2062)
Q Consensus 830 ~~l~s~~~~~l~~~~~~~~dl~~l~ll~~~le~~~~~~e~~e~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~~~gt~~ 909 (2062)
+...
T Consensus 299 ----------------------------------------------------------------------------~~~~ 302 (773)
T PRK13766 299 ----------------------------------------------------------------------------GVEA 302 (773)
T ss_pred ----------------------------------------------------------------------------CHHH
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhccchhhhhhccChHHH
Q 000139 910 FEKIRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLSPVER 989 (2062)
Q Consensus 910 ~e~l~~~l~eer~~~~~~~~~~~~~~n~~rc~~~p~y~~~L~~ll~~~~p~~~~~~~~~~~~~~~~ss~L~~~v~s~~er 989 (2062)
+......+. .. .... .+ +.....+... .+
T Consensus 303 ~~~y~~~l~--------~~----------~~~~---------------~~----------------~~~~~~l~~~--~~ 331 (773)
T PRK13766 303 LRRYLERLR--------EE----------ARSS---------------GG----------------SKASKRLVED--PR 331 (773)
T ss_pred HHHHHHHHH--------hh----------cccc---------------CC----------------cHHHHHHHhC--HH
Confidence 000000000 00 0000 00 0000000000 00
Q ss_pred HHHhhhhhhhhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhcccccCCccccccccchHH
Q 000139 990 FQRMIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQFDCGKLQ 1069 (2062)
Q Consensus 990 l~~l~~lie~f~~~vp~~~ap~p~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~fPd~rLiq~dSGKLq 1069 (2062)
..+....+ ..+....+|++
T Consensus 332 ~~~~~~~~-------------------------------------------------------------~~~~~~~pK~~ 350 (773)
T PRK13766 332 FRKAVRKA-------------------------------------------------------------KELDIEHPKLE 350 (773)
T ss_pred HHHHHHHH-------------------------------------------------------------HhcccCChHHH
Confidence 00000000 00012357999
Q ss_pred HHHHHHHHhh--hCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCC--------CCHHHHHHHHHHHhcCCCceEEEE
Q 000139 1070 ELAILLRKLK--SDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGS--------TQPEERQTLMQRFNTNPKIFLFIL 1139 (2062)
Q Consensus 1070 ~L~~LLrkLk--s~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGs--------Ts~eqRq~lmerFN~D~~IfVfLL 1139 (2062)
.|..+|+... ..+.|||||+++..+++.|..+|...|+.+.+++|. ++..+|+.++++|+. +.+.| |+
T Consensus 351 ~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~-g~~~v-Lv 428 (773)
T PRK13766 351 KLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRA-GEFNV-LV 428 (773)
T ss_pred HHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHc-CCCCE-EE
Confidence 9999999886 578999999999999999999999999999999997 788899999999987 45666 67
Q ss_pred eccccccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHH
Q 000139 1140 STRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALD 1210 (2062)
Q Consensus 1140 STrAGG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~qKr~L~ 1210 (2062)
+|.++++|+|++.+++||+||++|||....|+.||++|.|+ +.||.|++++|+||.+|..+..|....
T Consensus 429 aT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~---~~v~~l~~~~t~ee~~y~~~~~ke~~~ 496 (773)
T PRK13766 429 STSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE---GRVVVLIAKGTRDEAYYWSSRRKEKKM 496 (773)
T ss_pred ECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC---CEEEEEEeCCChHHHHHHHhhHHHHHH
Confidence 88999999999999999999999999999997777777665 789999999999999998776666554
No 24
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.93 E-value=1e-23 Score=254.79 Aligned_cols=148 Identities=21% Similarity=0.338 Sum_probs=131.2
Q ss_pred ccchHHHHHHHHHHhh--hCCCeEEEEeCchHHHHHHHHHHHHcCCcEE-EecC--------CCCHHHHHHHHHHHhcCC
Q 000139 1064 DCGKLQELAILLRKLK--SDGHRALIFTQMTKMLDILEEFISLYGYTYM-RLDG--------STQPEERQTLMQRFNTNP 1132 (2062)
Q Consensus 1064 dSGKLq~L~~LLrkLk--s~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~-RLDG--------sTs~eqRq~lmerFN~D~ 1132 (2062)
+-+||..|..+|++.. ..+.||||||+|..+.+.|..+|...|+... |+-| +|++.+..+++++|.+ +
T Consensus 346 ~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~-G 424 (542)
T COG1111 346 EHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRK-G 424 (542)
T ss_pred CCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhc-C
Confidence 4589999999998886 5678999999999999999999999998875 7766 5888899999999986 6
Q ss_pred CceEEEEeccccccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHH
Q 000139 1133 KIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDL 1212 (2062)
Q Consensus 1133 ~IfVfLLSTrAGG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~qKr~L~~~ 1212 (2062)
.+.| |++|..|-+||++...|-||||||.-.|-.-.||+||.+| .|.-.||-|+++||-+|--+..+.+|-.-...
T Consensus 425 e~nV-LVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR---~r~Grv~vLvt~gtrdeayy~~s~rke~~m~e 500 (542)
T COG1111 425 EYNV-LVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGR---KRKGRVVVLVTEGTRDEAYYYSSRRKEQKMIE 500 (542)
T ss_pred CceE-EEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCcccc---CCCCeEEEEEecCchHHHHHHHHHHHHHHHHH
Confidence 6777 7899999999999999999999999999999999999888 48888999999999999999888888776666
Q ss_pred HHhc
Q 000139 1213 VIQS 1216 (2062)
Q Consensus 1213 vIq~ 1216 (2062)
.+.+
T Consensus 501 ~i~~ 504 (542)
T COG1111 501 SIRG 504 (542)
T ss_pred HHHH
Confidence 6654
No 25
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.93 E-value=1.2e-23 Score=268.56 Aligned_cols=127 Identities=17% Similarity=0.185 Sum_probs=111.4
Q ss_pred hHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccccc
Q 000139 1067 KLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGV 1146 (2062)
Q Consensus 1067 KLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~ 1146 (2062)
+.+.+..++..+...|+++|||+..+...+.|...|+..|+.+..|+|.++.++|..+++.|+. +...|+|.|++..|+
T Consensus 329 Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~-~~~~vLvaT~~~l~e 407 (501)
T PHA02558 329 RNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEG-GKGIIIVASYGVFST 407 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhC-CCCeEEEEEcceecc
Confidence 4445556666666678899999999999999999999999999999999999999999999985 566677777799999
Q ss_pred ccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcC-cEEEEEEEeCCC
Q 000139 1147 GINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTR-EVHIYRLISEST 1194 (2062)
Q Consensus 1147 GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTR-dV~VYRLIse~T 1194 (2062)
|+++...|+||+++|.-+.....|++||++|.|..| .+.||.|+-.-.
T Consensus 408 G~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~~ 456 (501)
T PHA02558 408 GISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDDLS 456 (501)
T ss_pred ccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeecccc
Confidence 999999999999999999999999999999999876 489999997543
No 26
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.93 E-value=9.9e-24 Score=265.19 Aligned_cols=364 Identities=23% Similarity=0.301 Sum_probs=266.7
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC-cHHHHHHHHHHHCC
Q 000139 520 LLKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS-VMLNWETEFLKWCP 598 (2062)
Q Consensus 520 lLk~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtS-LL~QW~~Efkkw~P 598 (2062)
.....||+||.++++-+...+.....||+.-.+|.|||+.++.++..+.. ++|||||+. ++.||...+.+++.
T Consensus 32 ~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~------~~Lvlv~~~~L~~Qw~~~~~~~~~ 105 (442)
T COG1061 32 AFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR------STLVLVPTKELLDQWAEALKKFLL 105 (442)
T ss_pred ccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC------CEEEEECcHHHHHHHHHHHHHhcC
Confidence 34578999999999977776665888999999999999999998887643 499999985 89999988888875
Q ss_pred CC-eEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhc--hhhhhccCeeEEEEcCccccCChhhHHHHHHHcccCc
Q 000139 599 AF-KILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQD--SKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSK 675 (2062)
Q Consensus 599 ~l-kVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d--~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L~a~ 675 (2062)
.. .+..|.|..+... . ..|.|+||+++.+. ...+....|++||+|||||+.....+.+.. .+...
T Consensus 106 ~~~~~g~~~~~~~~~~---------~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~--~~~~~ 173 (442)
T COG1061 106 LNDEIGIYGGGEKELE---------P-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRILE--LLSAA 173 (442)
T ss_pred CccccceecCceeccC---------C-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHHHHH--hhhcc
Confidence 44 4556665543321 1 46999999999986 345555589999999999998755444333 34455
Q ss_pred e-EEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCcccccccccHHHHHHHHHhhhhhhhhhhhhhH-h
Q 000139 676 R-RILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRRLKRDV-E 753 (2062)
Q Consensus 676 ~-RLLLTGTPLQNsL~ELwSLL~FL~P~iF~s~~eFkewFsnPisg~~eg~~~~n~~~i~rLhkvLrpFmLRRtK~DV-e 753 (2062)
+ ||+|||||...+-..+.-+..++. |.+......+. .
T Consensus 174 ~~~LGLTATp~R~D~~~~~~l~~~~g-----------------------------------------~~vy~~~~~~li~ 212 (442)
T COG1061 174 YPRLGLTATPEREDGGRIGDLFDLIG-----------------------------------------PIVYEVSLKELID 212 (442)
T ss_pred cceeeeccCceeecCCchhHHHHhcC-----------------------------------------CeEeecCHHHHHh
Confidence 5 999999998554333333333332 22222222222 2
Q ss_pred -hcCCCceeEEEEecCCHHHHHHHHHHHHhHHHHHHhhhcchhhHHHHHHHHHHHhCCCcccCCCCcccccccccccccc
Q 000139 754 -KQLPMKQEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMSGIDSQL 832 (2062)
Q Consensus 754 -kqLP~K~EhVV~c~LSkrQR~LYdd~is~~~t~~~L~sgn~~silnvLmqLRKvCNHP~Lfe~r~i~S~f~~~~~~~~l 832 (2062)
..|.|.....+++.++..+...|..+........ .-+.. +.
T Consensus 213 ~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~---------------~~~~~-----~~------------------ 254 (442)
T COG1061 213 EGYLAPYKYVEIKVTLTEDEEREYAKESARFRELL---------------RARGT-----LR------------------ 254 (442)
T ss_pred CCCccceEEEEEEeccchHHHHHhhhhhhhhhhhh---------------hhhhh-----hh------------------
Confidence 3578888889999999988888876543211000 00000 00
Q ss_pred cccccccCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHhhhcccccccCCccccccccCCchHHHH
Q 000139 833 SSSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVGPFCTHRKRLNGTSIFEK 912 (2062)
Q Consensus 833 ~s~~~~~l~~~~~~~~dl~~l~ll~~~le~~~~~~e~~e~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~~~gt~~~e~ 912 (2062)
T Consensus 255 -------------------------------------------------------------------------------- 254 (442)
T COG1061 255 -------------------------------------------------------------------------------- 254 (442)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhccchhhhhhccChHHHHHH
Q 000139 913 IRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLSPVERFQR 992 (2062)
Q Consensus 913 l~~~l~eer~~~~~~~~~~~~~~n~~rc~~~p~y~~~L~~ll~~~~p~~~~~~~~~~~~~~~~ss~L~~~v~s~~erl~~ 992 (2062)
.....
T Consensus 255 ----~~~~~----------------------------------------------------------------------- 259 (442)
T COG1061 255 ----AENEA----------------------------------------------------------------------- 259 (442)
T ss_pred ----HHHHH-----------------------------------------------------------------------
Confidence 00000
Q ss_pred hhhhhhhhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhcccccCCccccccccchHHHHH
Q 000139 993 MIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQFDCGKLQELA 1072 (2062)
Q Consensus 993 l~~lie~f~~~vp~~~ap~p~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~fPd~rLiq~dSGKLq~L~ 1072 (2062)
.++......|+..+.
T Consensus 260 -----------------------------------------------------------------~~~~~~~~~~~~~~~ 274 (442)
T COG1061 260 -----------------------------------------------------------------RRIAIASERKIAAVR 274 (442)
T ss_pred -----------------------------------------------------------------HHHhhccHHHHHHHH
Confidence 000001235677777
Q ss_pred HHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCccc
Q 000139 1073 ILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVG 1152 (2062)
Q Consensus 1073 ~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ 1152 (2062)
.++.... .+.++|||+......+.|...+...|+ ...++|.|+..+|..++++|.... +.+ |++++.+++|+++..
T Consensus 275 ~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~-~~~-lv~~~vl~EGvDiP~ 350 (442)
T COG1061 275 GLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGG-IKV-LVTVKVLDEGVDIPD 350 (442)
T ss_pred HHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCC-CCE-EEEeeeccceecCCC
Confidence 7777766 789999999999999999999998888 889999999999999999999855 544 788999999999999
Q ss_pred CCEEEEecCCCChhhHHHHHHhhhc-cCCcCc--EEEEEEEeCCCHHHHHHHHHH
Q 000139 1153 ADTVIFYDSDWNPAMDQQAQDRCHR-IGQTRE--VHIYRLISESTIEENILKKAN 1204 (2062)
Q Consensus 1153 ADtVIfyD~dWNPa~d~QA~gRahR-IGQTRd--V~VYRLIse~TIEE~Ilkka~ 1204 (2062)
|+++|+..|.=++...+|++||+.| ...... +..|-++..++.+..+.....
T Consensus 351 ~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (442)
T COG1061 351 ADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRR 405 (442)
T ss_pred CcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhhh
Confidence 9999999999999999999999999 444444 888999999999998876643
No 27
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=9.4e-22 Score=233.75 Aligned_cols=355 Identities=23% Similarity=0.437 Sum_probs=249.0
Q ss_pred ccccccccccCCCCCC--CCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC
Q 000139 507 TFSTTQVRTKFPFLLK--FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS 584 (2062)
Q Consensus 507 ~~~tt~vkt~vP~lLk--~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtS 584 (2062)
++-...+...++-.|+ ..|||||...|..|.-.-+ .+.||+.-.+|.|||++.|..++.. .+.+||+|-++
T Consensus 283 DFRND~~npdl~idLKPst~iRpYQEksL~KMFGNgR-ARSGiIVLPCGAGKtLVGvTAa~ti------kK~clvLcts~ 355 (776)
T KOG1123|consen 283 DFRNDNVNPDLDIDLKPSTQIRPYQEKSLSKMFGNGR-ARSGIIVLPCGAGKTLVGVTAACTI------KKSCLVLCTSA 355 (776)
T ss_pred ccccCCCCCCCCcCcCcccccCchHHHHHHHHhCCCc-ccCceEEEecCCCCceeeeeeeeee------cccEEEEecCc
Confidence 3434445555555554 6899999999988765322 3478999999999999998776654 34789999987
Q ss_pred c-HHHHHHHHHHHCC--CCeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhc----------hhhhhccCeeEEE
Q 000139 585 V-MLNWETEFLKWCP--AFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQD----------SKVFKRKKWKYLI 651 (2062)
Q Consensus 585 L-L~QW~~Efkkw~P--~lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d----------~~~L~r~~W~lVI 651 (2062)
+ +.||...|+.|+. .-.+..|....+++. +....||||||.++..- ...+....|.++|
T Consensus 356 VSVeQWkqQfk~wsti~d~~i~rFTsd~Ke~~--------~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGlll 427 (776)
T KOG1123|consen 356 VSVEQWKQQFKQWSTIQDDQICRFTSDAKERF--------PSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLL 427 (776)
T ss_pred cCHHHHHHHHHhhcccCccceEEeeccccccC--------CCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEE
Confidence 5 8999999999984 345666666655542 34566999999999643 4567888999999
Q ss_pred EcCccccCChhhHHHHHHHc-ccCceEEEEeccCCCCChHHHHHHHHHh-CCCCCCChHHHHHHhcCCCCCccccccccc
Q 000139 652 LDEAHLIKNWKSQRWQTLLN-FNSKRRILLTGTPLQNDLMELWSLMHFL-MPHIFQSHQEFKDWFCNPISGMVEGQEKVN 729 (2062)
Q Consensus 652 LDEAH~IKN~~Sk~~qaL~~-L~a~~RLLLTGTPLQNsL~ELwSLL~FL-~P~iF~s~~eFkewFsnPisg~~eg~~~~n 729 (2062)
+||+|.+- .+.++.+.. +.+..+|+||||-+..+ |=..=|+|| .|.++.- +|..
T Consensus 428 lDEVHvvP---A~MFRRVlsiv~aHcKLGLTATLvRED--dKI~DLNFLIGPKlYEA-----nWmd-------------- 483 (776)
T KOG1123|consen 428 LDEVHVVP---AKMFRRVLSIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYEA-----NWMD-------------- 483 (776)
T ss_pred eehhccch---HHHHHHHHHHHHHHhhccceeEEeecc--ccccccceeecchhhhc-----cHHH--------------
Confidence 99999984 444444444 47889999999988643 222235666 3443311 1110
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhHhhcCCCceeEEEEecCCHHHHHHHHHHHHhHHHHHHhhhcchhhHHHHHHHHHHHhC
Q 000139 730 KEVVDRLHNVLRPFILRRLKRDVEKQLPMKQEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISVIMQLRKVCN 809 (2062)
Q Consensus 730 ~~~i~rLhkvLrpFmLRRtK~DVekqLP~K~EhVV~c~LSkrQR~LYdd~is~~~t~~~L~sgn~~silnvLmqLRKvCN 809 (2062)
|. -..+ +..-.-.-|+|+||+. +|.+++.....+. .
T Consensus 484 ------L~--~kGh------------IA~VqCaEVWCpMt~e---Fy~eYL~~~t~kr------------------~--- 519 (776)
T KOG1123|consen 484 ------LQ--KKGH------------IAKVQCAEVWCPMTPE---FYREYLRENTRKR------------------M--- 519 (776)
T ss_pred ------HH--hCCc------------eeEEeeeeeecCCCHH---HHHHHHhhhhhhh------------------h---
Confidence 00 0111 2222344679999985 7776653211000 0
Q ss_pred CCcccCCCCcccccccccccccccccccccCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHhhhcc
Q 000139 810 HPDLFEGRPIVSSFDMSGIDSQLSSSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLN 889 (2062)
Q Consensus 810 HP~Lfe~r~i~S~f~~~~~~~~l~s~~~~~l~~~~~~~~dl~~l~ll~~~le~~~~~~e~~e~~~l~tp~~li~~~~~l~ 889 (2062)
|
T Consensus 520 ---l---------------------------------------------------------------------------- 520 (776)
T KOG1123|consen 520 ---L---------------------------------------------------------------------------- 520 (776)
T ss_pred ---e----------------------------------------------------------------------------
Confidence 0
Q ss_pred cccccCCccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhh
Q 000139 890 NLEEVGPFCTHRKRLNGTSIFEKIRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTV 969 (2062)
Q Consensus 890 ~~~~~~p~~~~~~~~~gt~~~e~l~~~l~eer~~~~~~~~~~~~~~n~~rc~~~p~y~~~L~~ll~~~~p~~~~~~~~~~ 969 (2062)
T Consensus 521 -------------------------------------------------------------------------------- 520 (776)
T KOG1123|consen 521 -------------------------------------------------------------------------------- 520 (776)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhccchhhhhhccChHHHHHHhhhhhhhhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhh
Q 000139 970 RRSYLYSSKLADIVLSPVERFQRMIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIV 1049 (2062)
Q Consensus 970 ~~~~~~ss~L~~~v~s~~erl~~l~~lie~f~~~vp~~~ap~p~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~l~~~~~ 1049 (2062)
T Consensus 521 -------------------------------------------------------------------------------- 520 (776)
T KOG1123|consen 521 -------------------------------------------------------------------------------- 520 (776)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcccccCCccccccccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHh
Q 000139 1050 RRQVYFPDRRLIQFDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFN 1129 (2062)
Q Consensus 1050 ~~~~~fPd~rLiq~dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN 1129 (2062)
|..+...|+++..-|++.....|.|+|||+..+-.|.-. --..|-.| |+|.|+..+|-++++.|+
T Consensus 521 ----------LyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~Y---Aikl~Kpf--IYG~Tsq~ERm~ILqnFq 585 (776)
T KOG1123|consen 521 ----------LYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEY---AIKLGKPF--IYGPTSQNERMKILQNFQ 585 (776)
T ss_pred ----------eeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHH---HHHcCCce--EECCCchhHHHHHHHhcc
Confidence 001122466677777777778899999999876555433 33334444 789999999999999999
Q ss_pred cCCCceEEEEeccccccccCcccCCEEEEecCCCC-hhhHHHHHHhhhccCCcC----cEEEEEEEeCCCHHHHH
Q 000139 1130 TNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWN-PAMDQQAQDRCHRIGQTR----EVHIYRLISESTIEENI 1199 (2062)
Q Consensus 1130 ~D~~IfVfLLSTrAGG~GLNLT~ADtVIfyD~dWN-Pa~d~QA~gRahRIGQTR----dV~VYRLIse~TIEE~I 1199 (2062)
.++.|.-+.+| ++|...|+|..|+.+|-+.+..- -..++||.||+-|--... .++.|-||+.+|.|-.-
T Consensus 586 ~n~~vNTIFlS-KVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~Y 659 (776)
T KOG1123|consen 586 TNPKVNTIFLS-KVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYY 659 (776)
T ss_pred cCCccceEEEe-eccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHh
Confidence 99999877676 89999999999999999998764 467999999999965322 38999999999988543
No 28
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.82 E-value=2.5e-18 Score=218.13 Aligned_cols=121 Identities=18% Similarity=0.351 Sum_probs=106.1
Q ss_pred hHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccccc
Q 000139 1067 KLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGV 1146 (2062)
Q Consensus 1067 KLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~ 1146 (2062)
|+..|..+|... .+.++|||++.....+.|...|...|+....++|.++..+|+.+++.|.+ +.+.| |++|.+++.
T Consensus 229 k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~-g~~~v-LVaTdv~~r 304 (460)
T PRK11776 229 RLPALQRLLLHH--QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFAN-RSCSV-LVATDVAAR 304 (460)
T ss_pred HHHHHHHHHHhc--CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHc-CCCcE-EEEeccccc
Confidence 566666666543 35689999999999999999999999999999999999999999999985 56766 678899999
Q ss_pred ccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCC
Q 000139 1147 GINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISES 1193 (2062)
Q Consensus 1147 GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~ 1193 (2062)
|||+.++++||.||.+.++....|++||++|.|+. -..|.|++.+
T Consensus 305 GiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~--G~ai~l~~~~ 349 (460)
T PRK11776 305 GLDIKALEAVINYELARDPEVHVHRIGRTGRAGSK--GLALSLVAPE 349 (460)
T ss_pred ccchhcCCeEEEecCCCCHhHhhhhcccccCCCCc--ceEEEEEchh
Confidence 99999999999999999999999999999999975 4566677664
No 29
>PTZ00110 helicase; Provisional
Probab=99.82 E-value=3.1e-18 Score=221.01 Aligned_cols=124 Identities=24% Similarity=0.378 Sum_probs=110.3
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccc
Q 000139 1066 GKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGG 1145 (2062)
Q Consensus 1066 GKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG 1145 (2062)
.|...|..+|..+...+.++|||++.....+.|...|...|+..+.++|.++..+|..+++.|.. +.+.| |++|.+++
T Consensus 361 ~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~-G~~~I-LVaTdv~~ 438 (545)
T PTZ00110 361 EKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKT-GKSPI-MIATDVAS 438 (545)
T ss_pred hHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhc-CCCcE-EEEcchhh
Confidence 36666777777776678899999999999999999999999999999999999999999999986 55665 78999999
Q ss_pred cccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCC
Q 000139 1146 VGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISES 1193 (2062)
Q Consensus 1146 ~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~ 1193 (2062)
.|||+..+++||+||+++++....|++||++|.|.+- .+|.|++.+
T Consensus 439 rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G--~ai~~~~~~ 484 (545)
T PTZ00110 439 RGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKG--ASYTFLTPD 484 (545)
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCc--eEEEEECcc
Confidence 9999999999999999999999999999999999764 446667765
No 30
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.82 E-value=1.3e-18 Score=221.22 Aligned_cols=105 Identities=20% Similarity=0.283 Sum_probs=97.0
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEEEec
Q 000139 1081 DGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYD 1160 (2062)
Q Consensus 1081 ~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIfyD 1160 (2062)
.|.++|||+...+..+.|...|...|+....++|+++.++|..+++.|.. +.+.| |++|.+.|.|||+...++||+||
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~-g~~~v-LVaT~~~~~GID~p~V~~VI~~~ 302 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQR-DEIQV-VVATVAFGMGINKPDVRFVIHYS 302 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHc-CCCcE-EEEechhhccCCcccceEEEEeC
Confidence 46678999999999999999999999999999999999999999999985 67777 67889999999999999999999
Q ss_pred CCCChhhHHHHHHhhhccCCcCcEEEE
Q 000139 1161 SDWNPAMDQQAQDRCHRIGQTREVHIY 1187 (2062)
Q Consensus 1161 ~dWNPa~d~QA~gRahRIGQTRdV~VY 1187 (2062)
++.++....|++||++|.|+.....+|
T Consensus 303 ~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 303 LPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred CCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 999999999999999999988776554
No 31
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.82 E-value=1e-17 Score=213.52 Aligned_cols=145 Identities=21% Similarity=0.285 Sum_probs=114.0
Q ss_pred cccchHHHHHHHHHHhhhC--CCeEEEEeCchHHHHHHHHHHH-Hc--CCcEEEecC--------CCCHHHHHHHHHHHh
Q 000139 1063 FDCGKLQELAILLRKLKSD--GHRALIFTQMTKMLDILEEFIS-LY--GYTYMRLDG--------STQPEERQTLMQRFN 1129 (2062)
Q Consensus 1063 ~dSGKLq~L~~LLrkLks~--GhKVLIFSQ~t~mLDILe~~L~-~~--Gi~y~RLDG--------sTs~eqRq~lmerFN 1129 (2062)
+..+|++.|...|...... ..|+|||+.+....+.|-.+|. .+ |++-..+-| +++..+.+..|+.|+
T Consensus 392 ~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr 471 (746)
T KOG0354|consen 392 KENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFR 471 (746)
T ss_pred ccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHh
Confidence 3578999999999888654 4799999999999999999997 43 445444544 577788899999999
Q ss_pred cCCCceEEEEeccccccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHH-HHHHHH
Q 000139 1130 TNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKK-ANQKRA 1208 (2062)
Q Consensus 1130 ~D~~IfVfLLSTrAGG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkk-a~qKr~ 1208 (2062)
+ +.+.| |++|..|-+||++..||-||.||..-||....||+|| +| .|.-.++-|.+ .++..-+++ +..|+.
T Consensus 472 ~-G~~Nv-LVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gR---a~ns~~vll~t--~~~~~~~E~~~~~~e~ 543 (746)
T KOG0354|consen 472 D-GEINV-LVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GR---ARNSKCVLLTT--GSEVIEFERNNLAKEK 543 (746)
T ss_pred C-CCccE-EEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-cc---ccCCeEEEEEc--chhHHHHHHHHHhHHH
Confidence 6 88888 6788999999999999999999999999999999999 55 66666666666 445444433 345666
Q ss_pred HHHHHHh
Q 000139 1209 LDDLVIQ 1215 (2062)
Q Consensus 1209 L~~~vIq 1215 (2062)
+....|.
T Consensus 544 lm~~~i~ 550 (746)
T KOG0354|consen 544 LMNQTIS 550 (746)
T ss_pred HHHHHHH
Confidence 6665553
No 32
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.80 E-value=9.2e-18 Score=211.48 Aligned_cols=116 Identities=18% Similarity=0.301 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccccc
Q 000139 1067 KLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGV 1146 (2062)
Q Consensus 1067 KLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~ 1146 (2062)
|+..|..++.. ..+.++|||+.....++.|...|...|+....++|.++..+|..++++|+. +.+.| |++|.+++.
T Consensus 232 k~~~l~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~-G~~~v-LVaTd~~~~ 307 (434)
T PRK11192 232 KTALLCHLLKQ--PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTD-GRVNV-LVATDVAAR 307 (434)
T ss_pred HHHHHHHHHhc--CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhC-CCCcE-EEEcccccc
Confidence 45555555542 245799999999999999999999999999999999999999999999985 67776 678899999
Q ss_pred ccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEE
Q 000139 1147 GINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHI 1186 (2062)
Q Consensus 1147 GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~V 1186 (2062)
|||+..+++||+||+++++....|++||++|.|..-.+.+
T Consensus 308 GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~ 347 (434)
T PRK11192 308 GIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAIS 347 (434)
T ss_pred CccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEE
Confidence 9999999999999999999999999999999997655444
No 33
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.80 E-value=1.2e-17 Score=212.92 Aligned_cols=121 Identities=21% Similarity=0.291 Sum_probs=103.8
Q ss_pred hHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccccc
Q 000139 1067 KLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGV 1146 (2062)
Q Consensus 1067 KLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~ 1146 (2062)
|...|..+|.. ..+.|+|||++.....+.|...|...|+.+..++|.++.++|..+++.|.. +.+.| |++|.+++.
T Consensus 322 k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~-G~~~v-LvaT~~l~~ 397 (475)
T PRK01297 322 KYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFRE-GKIRV-LVATDVAGR 397 (475)
T ss_pred HHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhC-CCCcE-EEEcccccc
Confidence 44555555543 234699999999999999999999999999999999999999999999985 56766 678999999
Q ss_pred ccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCC
Q 000139 1147 GINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISES 1193 (2062)
Q Consensus 1147 GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~ 1193 (2062)
|||+.++++||+||.++++....|+.||++|.|+.- .++.|++.+
T Consensus 398 GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g--~~i~~~~~~ 442 (475)
T PRK01297 398 GIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASG--VSISFAGED 442 (475)
T ss_pred CCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCc--eEEEEecHH
Confidence 999999999999999999999999999999999754 445566554
No 34
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.80 E-value=7.4e-18 Score=216.62 Aligned_cols=122 Identities=21% Similarity=0.303 Sum_probs=102.9
Q ss_pred HHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHH-cCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccccc
Q 000139 1068 LQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISL-YGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGV 1146 (2062)
Q Consensus 1068 Lq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~-~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~ 1146 (2062)
...|..+|........++|||++.....+.|...|.. .|+.+..++|.++..+|..+++.|.. +.+.| |++|.+++.
T Consensus 353 ~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~-G~~~I-LVaTdvl~r 430 (518)
T PLN00206 353 KQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLV-GEVPV-IVATGVLGR 430 (518)
T ss_pred HHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHC-CCCCE-EEEecHhhc
Confidence 3444555554444446899999999999999999974 79999999999999999999999986 66776 688999999
Q ss_pred ccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCC
Q 000139 1147 GINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISES 1193 (2062)
Q Consensus 1147 GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~ 1193 (2062)
|||+..+++||+||++.++....|++||++|.|.. -.+|.|++.+
T Consensus 431 GiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~--G~ai~f~~~~ 475 (518)
T PLN00206 431 GVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEK--GTAIVFVNEE 475 (518)
T ss_pred cCCcccCCEEEEeCCCCCHHHHHHhccccccCCCC--eEEEEEEchh
Confidence 99999999999999999999999999999999964 4455566653
No 35
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.79 E-value=2.2e-17 Score=213.99 Aligned_cols=120 Identities=22% Similarity=0.395 Sum_probs=104.2
Q ss_pred hHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccccc
Q 000139 1067 KLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGV 1146 (2062)
Q Consensus 1067 KLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~ 1146 (2062)
|+..|..+|.. ..+.++|||++.....+.|...|...|+.+..|+|.++..+|..+++.|.+ +.+.| |++|.+.+.
T Consensus 244 k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~-G~~~V-LVaTdv~ar 319 (572)
T PRK04537 244 KQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQK-GQLEI-LVATDVAAR 319 (572)
T ss_pred HHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHc-CCCeE-EEEehhhhc
Confidence 45555555543 357899999999999999999999999999999999999999999999985 56666 688899999
Q ss_pred ccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeC
Q 000139 1147 GINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISE 1192 (2062)
Q Consensus 1147 GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse 1192 (2062)
|||+...++||+||.+|++....|++||+.|.|..-. .+.|++.
T Consensus 320 GIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~--ai~~~~~ 363 (572)
T PRK04537 320 GLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGD--AISFACE 363 (572)
T ss_pred CCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCce--EEEEecH
Confidence 9999999999999999999999999999999997644 4456655
No 36
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.79 E-value=1.3e-17 Score=209.66 Aligned_cols=121 Identities=19% Similarity=0.248 Sum_probs=105.2
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccc
Q 000139 1066 GKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGG 1145 (2062)
Q Consensus 1066 GKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG 1145 (2062)
.|+..|..+|... ...++|||++.....+.|..+|...|+.+..++|.++..+|..+++.|++ +.+.| |++|.+++
T Consensus 241 ~k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~-g~~~v-LVaTdv~~ 316 (423)
T PRK04837 241 EKMRLLQTLIEEE--WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTR-GDLDI-LVATDVAA 316 (423)
T ss_pred HHHHHHHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHc-CCCcE-EEEechhh
Confidence 3556666666542 35799999999999999999999999999999999999999999999986 56766 68889999
Q ss_pred cccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeC
Q 000139 1146 VGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISE 1192 (2062)
Q Consensus 1146 ~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse 1192 (2062)
.|||+.++++||+||+++++....|++||++|.|+.- .++-|+++
T Consensus 317 rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G--~ai~~~~~ 361 (423)
T PRK04837 317 RGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASG--HSISLACE 361 (423)
T ss_pred cCCCccccCEEEEeCCCCchhheEeccccccCCCCCe--eEEEEeCH
Confidence 9999999999999999999999999999999999664 34556665
No 37
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.78 E-value=2.7e-17 Score=208.64 Aligned_cols=115 Identities=19% Similarity=0.282 Sum_probs=100.2
Q ss_pred CCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEEEecC
Q 000139 1082 GHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDS 1161 (2062)
Q Consensus 1082 GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIfyD~ 1161 (2062)
..++|||+......+.|...|...|+....++|.++..+|..+++.|.. +.+.| |++|.+.+.|||+.+.++||+||+
T Consensus 245 ~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~-g~~~i-LVaTdv~~rGiDip~v~~VI~~~~ 322 (456)
T PRK10590 245 WQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKS-GDIRV-LVATDIAARGLDIEELPHVVNYEL 322 (456)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHc-CCCcE-EEEccHHhcCCCcccCCEEEEeCC
Confidence 4689999999999999999999999999999999999999999999986 56766 678999999999999999999999
Q ss_pred CCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHH
Q 000139 1162 DWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKK 1202 (2062)
Q Consensus 1162 dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkk 1202 (2062)
+.++....|++||++|.|++-.+ +-|++.+ |..+++.
T Consensus 323 P~~~~~yvqR~GRaGR~g~~G~a--i~l~~~~--d~~~~~~ 359 (456)
T PRK10590 323 PNVPEDYVHRIGRTGRAAATGEA--LSLVCVD--EHKLLRD 359 (456)
T ss_pred CCCHHHhhhhccccccCCCCeeE--EEEecHH--HHHHHHH
Confidence 99999999999999999986544 3355543 4444443
No 38
>PTZ00424 helicase 45; Provisional
Probab=99.78 E-value=3.1e-17 Score=204.24 Aligned_cols=109 Identities=18% Similarity=0.292 Sum_probs=98.4
Q ss_pred CCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEEEecC
Q 000139 1082 GHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDS 1161 (2062)
Q Consensus 1082 GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIfyD~ 1161 (2062)
..++|||+......+.|...|...|+....++|.++..+|+.+++.|++ +.+.| |++|...+.|||+..+++||+||+
T Consensus 267 ~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~-g~~~v-LvaT~~l~~GiDip~v~~VI~~~~ 344 (401)
T PTZ00424 267 ITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRS-GSTRV-LITTDLLARGIDVQQVSLVINYDL 344 (401)
T ss_pred CCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHc-CCCCE-EEEcccccCCcCcccCCEEEEECC
Confidence 4589999999999999999999999999999999999999999999985 66776 688899999999999999999999
Q ss_pred CCChhhHHHHHHhhhccCCcCcEEEEEEEeCCC
Q 000139 1162 DWNPAMDQQAQDRCHRIGQTREVHIYRLISEST 1194 (2062)
Q Consensus 1162 dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~T 1194 (2062)
+.++....|++||++|.|. .-.+|.|++.+-
T Consensus 345 p~s~~~y~qr~GRagR~g~--~G~~i~l~~~~~ 375 (401)
T PTZ00424 345 PASPENYIHRIGRSGRFGR--KGVAINFVTPDD 375 (401)
T ss_pred CCCHHHEeecccccccCCC--CceEEEEEcHHH
Confidence 9999999999999999985 455666776653
No 39
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.78 E-value=3e-17 Score=214.38 Aligned_cols=102 Identities=22% Similarity=0.261 Sum_probs=94.1
Q ss_pred CCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEEEecC
Q 000139 1082 GHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDS 1161 (2062)
Q Consensus 1082 GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIfyD~ 1161 (2062)
+.++|||+......+.|...|...|+.+..++|+++.++|..+++.|.. +.+.| |++|.+.|.|||+...+.||+||+
T Consensus 224 ~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~-g~~~v-lVaT~a~~~GID~p~v~~VI~~~~ 301 (591)
T TIGR01389 224 GQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLY-DDVKV-MVATNAFGMGIDKPNVRFVIHYDM 301 (591)
T ss_pred CCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHc-CCCcE-EEEechhhccCcCCCCCEEEEcCC
Confidence 6789999999999999999999999999999999999999999999986 45655 788999999999999999999999
Q ss_pred CCChhhHHHHHHhhhccCCcCcEE
Q 000139 1162 DWNPAMDQQAQDRCHRIGQTREVH 1185 (2062)
Q Consensus 1162 dWNPa~d~QA~gRahRIGQTRdV~ 1185 (2062)
+.|+....|++||++|.|+.-.+.
T Consensus 302 p~s~~~y~Q~~GRaGR~G~~~~~i 325 (591)
T TIGR01389 302 PGNLESYYQEAGRAGRDGLPAEAI 325 (591)
T ss_pred CCCHHHHhhhhccccCCCCCceEE
Confidence 999999999999999999765543
No 40
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.78 E-value=7.3e-17 Score=210.61 Aligned_cols=119 Identities=18% Similarity=0.283 Sum_probs=102.1
Q ss_pred hHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccccc
Q 000139 1067 KLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGV 1146 (2062)
Q Consensus 1067 KLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~ 1146 (2062)
|+..|..+|... ...++|||+.-....+.|...|...|+....++|.++..+|..++++|.. +++.| |++|.+.+.
T Consensus 232 k~~~L~~~L~~~--~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~-G~~~I-LVATdv~ar 307 (629)
T PRK11634 232 KNEALVRFLEAE--DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKD-GRLDI-LIATDVAAR 307 (629)
T ss_pred HHHHHHHHHHhc--CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhC-CCCCE-EEEcchHhc
Confidence 455555555432 34689999999999999999999999999999999999999999999986 56665 789999999
Q ss_pred ccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEe
Q 000139 1147 GINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLIS 1191 (2062)
Q Consensus 1147 GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIs 1191 (2062)
|||+...++||+||++.++....|++||+.|.|.+-. .+-|+.
T Consensus 308 GIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~--ai~~v~ 350 (629)
T PRK11634 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGR--ALLFVE 350 (629)
T ss_pred CCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcce--EEEEec
Confidence 9999999999999999999999999999999997654 333444
No 41
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.77 E-value=5.5e-17 Score=212.02 Aligned_cols=102 Identities=18% Similarity=0.246 Sum_probs=94.3
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEEEec
Q 000139 1081 DGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYD 1160 (2062)
Q Consensus 1081 ~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIfyD 1160 (2062)
.+.++|||++.....+.|...|...|+.+..++|+++.++|..+++.|.. +.+.| |++|.+.|.|||+...+.||+||
T Consensus 235 ~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~-g~~~V-LVaT~a~~~GIDip~V~~VI~~d 312 (607)
T PRK11057 235 RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQR-DDLQI-VVATVAFGMGINKPNVRFVVHFD 312 (607)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHC-CCCCE-EEEechhhccCCCCCcCEEEEeC
Confidence 46789999999999999999999999999999999999999999999986 56666 68889999999999999999999
Q ss_pred CCCChhhHHHHHHhhhccCCcCcE
Q 000139 1161 SDWNPAMDQQAQDRCHRIGQTREV 1184 (2062)
Q Consensus 1161 ~dWNPa~d~QA~gRahRIGQTRdV 1184 (2062)
++.++....|++||++|.|....+
T Consensus 313 ~P~s~~~y~Qr~GRaGR~G~~~~~ 336 (607)
T PRK11057 313 IPRNIESYYQETGRAGRDGLPAEA 336 (607)
T ss_pred CCCCHHHHHHHhhhccCCCCCceE
Confidence 999999999999999999976543
No 42
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.75 E-value=4.4e-16 Score=204.42 Aligned_cols=159 Identities=18% Similarity=0.237 Sum_probs=112.5
Q ss_pred CCCCCcHHHHHHHHHHHHHhhc--CCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC-cHHHHHHHHHHHC
Q 000139 521 LKFPLREYQHIGLDWLVTMYEK--RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS-VMLNWETEFLKWC 597 (2062)
Q Consensus 521 Lk~~LRpYQ~~GL~WLv~l~~~--~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtS-LL~QW~~Efkkw~ 597 (2062)
|.+.|.++|..++..++..... ..+.+|.-++|.|||+.++..+..... . ...+||++|+. |..||...|.+|+
T Consensus 232 lpf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~-~--g~qvlilaPT~~LA~Q~~~~~~~l~ 308 (630)
T TIGR00643 232 LPFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE-A--GYQVALMAPTEILAEQHYNSLRNLL 308 (630)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH-c--CCcEEEECCHHHHHHHHHHHHHHHh
Confidence 3457999999999998876533 357899999999999987655444332 2 34799999995 6788999999998
Q ss_pred C--CCeEEEEeCChhhHHh-hhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHccc-
Q 000139 598 P--AFKILTYFGSAKERKF-KRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFN- 673 (2062)
Q Consensus 598 P--~lkVl~y~Gs~kerk~-~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L~- 673 (2062)
+ ++++..++|+...... ....+...+..+|+|+|+..+.... .| .+..+||+||+|++.- .++........
T Consensus 309 ~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~-~~--~~l~lvVIDEaH~fg~--~qr~~l~~~~~~ 383 (630)
T TIGR00643 309 APLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKV-EF--KRLALVIIDEQHRFGV--EQRKKLREKGQG 383 (630)
T ss_pred cccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccc-cc--cccceEEEechhhccH--HHHHHHHHhccc
Confidence 7 5888888887543221 1112334567899999998876432 22 3568999999999742 22222222223
Q ss_pred --CceEEEEeccCCCC
Q 000139 674 --SKRRILLTGTPLQN 687 (2062)
Q Consensus 674 --a~~RLLLTGTPLQN 687 (2062)
..+.++|||||+..
T Consensus 384 ~~~~~~l~~SATp~pr 399 (630)
T TIGR00643 384 GFTPHVLVMSATPIPR 399 (630)
T ss_pred CCCCCEEEEeCCCCcH
Confidence 57899999999764
No 43
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.75 E-value=3e-16 Score=213.87 Aligned_cols=106 Identities=15% Similarity=0.299 Sum_probs=86.8
Q ss_pred CCeEEEEeCchHHHHHHHHHHHHc------CC---cEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCccc
Q 000139 1082 GHRALIFTQMTKMLDILEEFISLY------GY---TYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVG 1152 (2062)
Q Consensus 1082 GhKVLIFSQ~t~mLDILe~~L~~~------Gi---~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ 1152 (2062)
+.|+|||+......+.+...|+.. ++ .+..++|+++ +++.++++|.+ +....+++|+...++|++...
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~-~~~p~IlVsvdmL~TG~DvP~ 774 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKN-ERLPNIVVTVDLLTTGIDVPS 774 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhC-CCCCeEEEEecccccCCCccc
Confidence 369999999999888877776542 22 3467999986 68899999986 444456889999999999999
Q ss_pred CCEEEEecCCCChhhHHHHHHhhhccCC---cCcEEEEEEE
Q 000139 1153 ADTVIFYDSDWNPAMDQQAQDRCHRIGQ---TREVHIYRLI 1190 (2062)
Q Consensus 1153 ADtVIfyD~dWNPa~d~QA~gRahRIGQ---TRdV~VYRLI 1190 (2062)
.++|||++|.-++....|++||+-|+.- +....||-++
T Consensus 775 v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D~v 815 (1123)
T PRK11448 775 ICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFDAV 815 (1123)
T ss_pred ccEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEehH
Confidence 9999999999999999999999999854 5556777654
No 44
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.72 E-value=7.5e-16 Score=203.64 Aligned_cols=156 Identities=21% Similarity=0.260 Sum_probs=110.8
Q ss_pred CCCCCcHHHHHHHHHHHHHhhc--CCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC-cHHHHHHHHHHHC
Q 000139 521 LKFPLREYQHIGLDWLVTMYEK--RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS-VMLNWETEFLKWC 597 (2062)
Q Consensus 521 Lk~~LRpYQ~~GL~WLv~l~~~--~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtS-LL~QW~~Efkkw~ 597 (2062)
|.+.|.++|..++.-+..-... ..+.+|.-++|.|||+.++..+..... .| ..+||++|+. |..|+...|++|+
T Consensus 258 l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~-~g--~q~lilaPT~~LA~Q~~~~l~~l~ 334 (681)
T PRK10917 258 LPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE-AG--YQAALMAPTEILAEQHYENLKKLL 334 (681)
T ss_pred CCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH-cC--CeEEEEeccHHHHHHHHHHHHHHH
Confidence 4467999999999988875543 347899999999999988765554432 22 4799999995 7788999999998
Q ss_pred CC--CeEEEEeCChhh--HHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHcc-
Q 000139 598 PA--FKILTYFGSAKE--RKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNF- 672 (2062)
Q Consensus 598 P~--lkVl~y~Gs~ke--rk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L- 672 (2062)
+. +++..++|.... +..... ....+..+|+|+|+..+.... .| .+..+||+||+|++. ......+...
T Consensus 335 ~~~~i~v~ll~G~~~~~~r~~~~~-~l~~g~~~IvVgT~~ll~~~v-~~--~~l~lvVIDE~Hrfg---~~qr~~l~~~~ 407 (681)
T PRK10917 335 EPLGIRVALLTGSLKGKERREILE-AIASGEADIVIGTHALIQDDV-EF--HNLGLVIIDEQHRFG---VEQRLALREKG 407 (681)
T ss_pred hhcCcEEEEEcCCCCHHHHHHHHH-HHhCCCCCEEEchHHHhcccc-hh--cccceEEEechhhhh---HHHHHHHHhcC
Confidence 65 788888887653 222111 123356899999998775432 23 356899999999973 2233334433
Q ss_pred cCceEEEEeccCCC
Q 000139 673 NSKRRILLTGTPLQ 686 (2062)
Q Consensus 673 ~a~~RLLLTGTPLQ 686 (2062)
...+.++|||||+.
T Consensus 408 ~~~~iL~~SATp~p 421 (681)
T PRK10917 408 ENPHVLVMTATPIP 421 (681)
T ss_pred CCCCEEEEeCCCCH
Confidence 35689999999974
No 45
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.71 E-value=7.8e-16 Score=206.61 Aligned_cols=109 Identities=17% Similarity=0.216 Sum_probs=93.2
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHHc--CCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEEE
Q 000139 1081 DGHRALIFTQMTKMLDILEEFISLY--GYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIF 1158 (2062)
Q Consensus 1081 ~GhKVLIFSQ~t~mLDILe~~L~~~--Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIf 1158 (2062)
.|.+|+||++.....+.+...|... ++++..++|.++..+|..+|.+|.. +++.| |+||...+.|||+..+++||+
T Consensus 659 ~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~-Gk~~I-LVaT~iie~GIDIp~v~~VIi 736 (926)
T TIGR00580 659 RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYK-GEFQV-LVCTTIIETGIDIPNANTIII 736 (926)
T ss_pred cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHc-CCCCE-EEECChhhcccccccCCEEEE
Confidence 4679999999999999999999874 7899999999999999999999986 56666 788899999999999999999
Q ss_pred ecCC-CChhhHHHHHHhhhccCCcCcEEEEEEEeCC
Q 000139 1159 YDSD-WNPAMDQQAQDRCHRIGQTREVHIYRLISES 1193 (2062)
Q Consensus 1159 yD~d-WNPa~d~QA~gRahRIGQTRdV~VYRLIse~ 1193 (2062)
++.+ +..+...|+.||++|-|+ .-++|-|+..+
T Consensus 737 ~~a~~~gls~l~Qr~GRvGR~g~--~g~aill~~~~ 770 (926)
T TIGR00580 737 ERADKFGLAQLYQLRGRVGRSKK--KAYAYLLYPHQ 770 (926)
T ss_pred ecCCCCCHHHHHHHhcCCCCCCC--CeEEEEEECCc
Confidence 9986 455677899999999886 44556666543
No 46
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.71 E-value=7.3e-16 Score=204.14 Aligned_cols=105 Identities=21% Similarity=0.228 Sum_probs=95.9
Q ss_pred CCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEEEecC
Q 000139 1082 GHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDS 1161 (2062)
Q Consensus 1082 GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIfyD~ 1161 (2062)
+..+|||+......+.|..+|...|+....++|+++.++|..++++|.. +.+.| |++|.+.|.|||+...+.||+||.
T Consensus 680 ~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~-Gei~V-LVATdAFGMGIDkPDVR~VIHydl 757 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSK-DEINI-ICATVAFGMGINKPDVRFVIHHSL 757 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhc-CCCcE-EEEechhhcCCCccCCcEEEEcCC
Confidence 3578999999999999999999999999999999999999999999986 56766 678999999999999999999999
Q ss_pred CCChhhHHHHHHhhhccCCcCcEEEEE
Q 000139 1162 DWNPAMDQQAQDRCHRIGQTREVHIYR 1188 (2062)
Q Consensus 1162 dWNPa~d~QA~gRahRIGQTRdV~VYR 1188 (2062)
+-++....|++||++|.|+.-.+.+|.
T Consensus 758 PkSiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 758 PKSIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred CCCHHHHHhhhcccCCCCCCceEEEEe
Confidence 999999999999999999876655543
No 47
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.70 E-value=4.2e-15 Score=201.06 Aligned_cols=112 Identities=18% Similarity=0.138 Sum_probs=94.8
Q ss_pred HHHhhhCCCeEEEEeCchHHHHHHHHHHHH------cCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccccccc
Q 000139 1075 LRKLKSDGHRALIFTQMTKMLDILEEFISL------YGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGI 1148 (2062)
Q Consensus 1075 LrkLks~GhKVLIFSQ~t~mLDILe~~L~~------~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GL 1148 (2062)
|..+...+.++|||++.....+.+...|.. .+..+..++|+++.++|..+.++|.+ +.+.| |++|.+.+.||
T Consensus 277 L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~-G~i~v-LVaTs~Le~GI 354 (876)
T PRK13767 277 LHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKR-GELKV-VVSSTSLELGI 354 (876)
T ss_pred HHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHc-CCCeE-EEECChHHhcC
Confidence 333334577999999999999999988875 35678889999999999999999986 56766 67889999999
Q ss_pred CcccCCEEEEecCCCChhhHHHHHHhhhcc-CCcCcEEEEE
Q 000139 1149 NLVGADTVIFYDSDWNPAMDQQAQDRCHRI-GQTREVHIYR 1188 (2062)
Q Consensus 1149 NLT~ADtVIfyD~dWNPa~d~QA~gRahRI-GQTRdV~VYR 1188 (2062)
|+...|.||+|+++.++....|++||++|- |+...-.|+-
T Consensus 355 Dip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 355 DIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred CCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 999999999999999999999999999975 5555555554
No 48
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.69 E-value=2.1e-15 Score=206.29 Aligned_cols=106 Identities=17% Similarity=0.200 Sum_probs=91.9
Q ss_pred CCeEEEEeCchHHHHHHHHHHHHc--CCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEEEe
Q 000139 1082 GHRALIFTQMTKMLDILEEFISLY--GYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFY 1159 (2062)
Q Consensus 1082 GhKVLIFSQ~t~mLDILe~~L~~~--Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIfy 1159 (2062)
|.+|+||++....++.+...|... ++++..++|.++..+|.++|.+|.+ +++.| |++|...+.|||+..+++||++
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~-Gk~~V-LVaTdIierGIDIP~v~~VIi~ 886 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH-QRFNV-LVCTTIIETGIDIPTANTIIIE 886 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHh-cCCCE-EEECchhhcccccccCCEEEEe
Confidence 568999999999999999999876 8899999999999999999999986 56777 6788999999999999999998
Q ss_pred cCC-CChhhHHHHHHhhhccCCcCcEEEEEEEe
Q 000139 1160 DSD-WNPAMDQQAQDRCHRIGQTREVHIYRLIS 1191 (2062)
Q Consensus 1160 D~d-WNPa~d~QA~gRahRIGQTRdV~VYRLIs 1191 (2062)
+++ |......|+.||++|.|++- ++|-+..
T Consensus 887 ~ad~fglaq~~Qr~GRvGR~g~~g--~a~ll~~ 917 (1147)
T PRK10689 887 RADHFGLAQLHQLRGRVGRSHHQA--YAWLLTP 917 (1147)
T ss_pred cCCCCCHHHHHHHhhccCCCCCce--EEEEEeC
Confidence 875 67788999999999998764 4443443
No 49
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.68 E-value=1.2e-14 Score=193.24 Aligned_cols=117 Identities=16% Similarity=0.264 Sum_probs=100.4
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHHc--------CCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCccc
Q 000139 1081 DGHRALIFTQMTKMLDILEEFISLY--------GYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVG 1152 (2062)
Q Consensus 1081 ~GhKVLIFSQ~t~mLDILe~~L~~~--------Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ 1152 (2062)
.+.++|||++..++.+.|..+|... +.....++|+++.++|..++++|.+ +++.+ |++|.+.+.|||+.+
T Consensus 270 ~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~-G~i~v-LVaTd~lerGIDI~~ 347 (742)
T TIGR03817 270 EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRD-GELLG-VATTNALELGVDISG 347 (742)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHc-CCceE-EEECchHhccCCccc
Confidence 5789999999999999999888653 5677789999999999999999985 67776 789999999999999
Q ss_pred CCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHH
Q 000139 1153 ADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILK 1201 (2062)
Q Consensus 1153 ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilk 1201 (2062)
.|+||+||.|-+.....|++||++|.|+.- .++-++..+..|..++.
T Consensus 348 vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g--~ai~v~~~~~~d~~~~~ 394 (742)
T TIGR03817 348 LDAVVIAGFPGTRASLWQQAGRAGRRGQGA--LVVLVARDDPLDTYLVH 394 (742)
T ss_pred ccEEEEeCCCCCHHHHHHhccccCCCCCCc--EEEEEeCCChHHHHHHh
Confidence 999999999999999999999999999754 34445665667766544
No 50
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.66 E-value=4.4e-15 Score=185.10 Aligned_cols=120 Identities=22% Similarity=0.313 Sum_probs=106.0
Q ss_pred cchHHHHHHHHHHhh-hCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000139 1065 CGKLQELAILLRKLK-SDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1143 (2062)
Q Consensus 1065 SGKLq~L~~LLrkLk-s~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrA 1143 (2062)
..|.+.|..+|.... ..+-|||||++..++.+-|...|...|+..+-|+|..++.+|...++.|.. ++.. +|+.|..
T Consensus 323 ~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~Fre-G~~~-vLVATdV 400 (519)
T KOG0331|consen 323 TAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFRE-GKSP-VLVATDV 400 (519)
T ss_pred HHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhccc-CCcc-eEEEccc
Confidence 358888889998887 335699999999999999999999999999999999999999999999976 3443 4789999
Q ss_pred cccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEE
Q 000139 1144 GGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHI 1186 (2062)
Q Consensus 1144 GG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~V 1186 (2062)
++.||++.+.++||.||+|-|.-...+|+||.+|-|++-..+.
T Consensus 401 AaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~t 443 (519)
T KOG0331|consen 401 AARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAIT 443 (519)
T ss_pred ccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEE
Confidence 9999999999999999999999999999999999777655433
No 51
>PRK02362 ski2-like helicase; Provisional
Probab=99.64 E-value=2.9e-14 Score=190.75 Aligned_cols=150 Identities=17% Similarity=0.144 Sum_probs=102.9
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCC-CCe
Q 000139 524 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCP-AFK 601 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw~P-~lk 601 (2062)
.|+|+|..++.-+ +..+.|.|++-.+|.|||+.+...+..... ..+++|+|+|+ .|+.|+..+|+++.+ +++
T Consensus 23 ~l~p~Q~~ai~~~---~~~g~nvlv~APTGSGKTlia~lail~~l~---~~~kal~i~P~raLa~q~~~~~~~~~~~g~~ 96 (737)
T PRK02362 23 ELYPPQAEAVEAG---LLDGKNLLAAIPTASGKTLIAELAMLKAIA---RGGKALYIVPLRALASEKFEEFERFEELGVR 96 (737)
T ss_pred cCCHHHHHHHHHH---HhCCCcEEEECCCcchHHHHHHHHHHHHHh---cCCcEEEEeChHHHHHHHHHHHHHhhcCCCE
Confidence 5899999999743 335789999999999999988644443332 23589999998 688899999988754 688
Q ss_pred EEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhh--hhccCeeEEEEcCccccCChh-hHHHHH-H---Hcc-c
Q 000139 602 ILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKV--FKRKKWKYLILDEAHLIKNWK-SQRWQT-L---LNF-N 673 (2062)
Q Consensus 602 Vl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~--L~r~~W~lVILDEAH~IKN~~-Sk~~qa-L---~~L-~ 673 (2062)
+..++|...... .|. ...+|+|+|++.+..-... ..-...++||+||+|.+.+.. ...+.. + +.+ .
T Consensus 97 v~~~tGd~~~~~----~~l--~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~ 170 (737)
T PRK02362 97 VGISTGDYDSRD----EWL--GDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNP 170 (737)
T ss_pred EEEEeCCcCccc----ccc--CCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcCC
Confidence 888888754322 122 3578999999876432211 111246999999999997532 112221 2 222 3
Q ss_pred CceEEEEeccCC
Q 000139 674 SKRRILLTGTPL 685 (2062)
Q Consensus 674 a~~RLLLTGTPL 685 (2062)
..+.++||||+-
T Consensus 171 ~~qii~lSATl~ 182 (737)
T PRK02362 171 DLQVVALSATIG 182 (737)
T ss_pred CCcEEEEcccCC
Confidence 457899999963
No 52
>PRK01172 ski2-like helicase; Provisional
Probab=99.63 E-value=6.6e-14 Score=185.82 Aligned_cols=149 Identities=18% Similarity=0.209 Sum_probs=100.8
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCC-CC
Q 000139 523 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCP-AF 600 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw~P-~l 600 (2062)
..|+++|..++..+ ..+.+.|++..+|.|||+++...+...... .+.+++|+|. ++..|+..+|.++.. +.
T Consensus 21 ~~l~~~Q~~ai~~l----~~~~nvlv~apTGSGKTl~a~lail~~l~~---~~k~v~i~P~raLa~q~~~~~~~l~~~g~ 93 (674)
T PRK01172 21 FELYDHQRMAIEQL----RKGENVIVSVPTAAGKTLIAYSAIYETFLA---GLKSIYIVPLRSLAMEKYEELSRLRSLGM 93 (674)
T ss_pred CCCCHHHHHHHHHH----hcCCcEEEECCCCchHHHHHHHHHHHHHHh---CCcEEEEechHHHHHHHHHHHHHHhhcCC
Confidence 45899999999875 347789999999999999887655544332 2578999998 578889999988653 57
Q ss_pred eEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchh--hhhccCeeEEEEcCccccCChh-hHHHHHH----Hccc
Q 000139 601 KILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK--VFKRKKWKYLILDEAHLIKNWK-SQRWQTL----LNFN 673 (2062)
Q Consensus 601 kVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~--~L~r~~W~lVILDEAH~IKN~~-Sk~~qaL----~~L~ 673 (2062)
++..+.|....... + ....+|+|+|++.+..-.. ...-.++++||+||+|.+.+.. ......+ +.++
T Consensus 94 ~v~~~~G~~~~~~~----~--~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~ 167 (674)
T PRK01172 94 RVKISIGDYDDPPD----F--IKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVN 167 (674)
T ss_pred eEEEEeCCCCCChh----h--hccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcC
Confidence 77777776433211 1 1356899999986543211 1112356899999999996432 1122222 2222
Q ss_pred -CceEEEEeccC
Q 000139 674 -SKRRILLTGTP 684 (2062)
Q Consensus 674 -a~~RLLLTGTP 684 (2062)
..+.++||||+
T Consensus 168 ~~~riI~lSATl 179 (674)
T PRK01172 168 PDARILALSATV 179 (674)
T ss_pred cCCcEEEEeCcc
Confidence 34679999996
No 53
>smart00573 HSA domain in helicases and associated with SANT domains.
Probab=99.61 E-value=2e-15 Score=144.86 Aligned_cols=71 Identities=46% Similarity=0.782 Sum_probs=67.4
Q ss_pred CCCCCCCCCCchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHH-HHHHHHHHHHHHH
Q 000139 24 APREPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKKVALRASKGMLDQASRGEKK-LKEEEQRLRKVAV 94 (2062)
Q Consensus 24 ~~~ep~r~k~hwd~lleEm~wma~df~~Er~wk~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~ia~ 94 (2062)
+.++|+|+||||||||+||.||++||.+||+||++.|++||++|+.||...+..++|. ++++++|++++|.
T Consensus 2 ~~~~e~r~k~h~d~lL~e~~w~~~df~e~~k~k~~~a~kla~~v~~~h~~~e~~e~r~~er~ek~Rl~~l~~ 73 (73)
T smart00573 2 KLEEERRRKQHWDHLLEEMIWHAKDFKEEHKWKIAAAKKMAKAVMDYHQNKEKEEERREEKNEKRRLRKLAA 73 (73)
T ss_pred CCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 5678999999999999999999999999999999999999999999999999999988 8999999999873
No 54
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.60 E-value=3.6e-15 Score=155.40 Aligned_cols=120 Identities=31% Similarity=0.466 Sum_probs=111.6
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccc
Q 000139 1066 GKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGG 1145 (2062)
Q Consensus 1066 GKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG 1145 (2062)
.|+..+..++.+....+.++|||+.....+..+...|...++.+..++|+++...|..+++.|+... ..+|++|.++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~--~~ili~t~~~~ 89 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGE--IVVLVATDVIA 89 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCC--CcEEEEcChhh
Confidence 6999999999988777899999999999999999999989999999999999999999999999744 45577899999
Q ss_pred cccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEE
Q 000139 1146 VGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIY 1187 (2062)
Q Consensus 1146 ~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VY 1187 (2062)
.|+|+++|++||+++++||+....|++||++|.||+..|+||
T Consensus 90 ~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 90 RGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 999999999999999999999999999999999998888775
No 55
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.60 E-value=5.5e-15 Score=162.74 Aligned_cols=154 Identities=26% Similarity=0.389 Sum_probs=112.3
Q ss_pred CCCcHHHHHHHHHHHHHhhcC---CcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCC
Q 000139 523 FPLREYQHIGLDWLVTMYEKR---LNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCP 598 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~---~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw~P 598 (2062)
.+||+||.+++.-++..+... .+++|...||.|||++++.++..+.. ++|||||. +++.||..+|..+.+
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~ 75 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGS 75 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHST
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhh
Confidence 579999999999999887654 78999999999999999998888765 89999999 789999999988877
Q ss_pred CCeEEEEeCChhhH-----------HhhhhccCCCCCceEEEEehhhhhhchhh-------------hhccCeeEEEEcC
Q 000139 599 AFKILTYFGSAKER-----------KFKRQGWLKPNSFHVCITTYRLIIQDSKV-------------FKRKKWKYLILDE 654 (2062)
Q Consensus 599 ~lkVl~y~Gs~ker-----------k~~r~gw~k~~~fdVVITSYe~l~~d~~~-------------L~r~~W~lVILDE 654 (2062)
.............. ...... ......++++++|+.+...... +....+++||+||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DE 154 (184)
T PF04851_consen 76 EKYNFFEKSIKPAYDSKEFISIQDDISDKSE-SDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDE 154 (184)
T ss_dssp TSEEEEE--GGGCCE-SEEETTTTEEEHHHH-HCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEET
T ss_pred hhhhhcccccccccccccccccccccccccc-cccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEeh
Confidence 65444322110000 000000 1234678999999999876432 3345789999999
Q ss_pred ccccCChhhHHHHHHHcccCceEEEEeccCC
Q 000139 655 AHLIKNWKSQRWQTLLNFNSKRRILLTGTPL 685 (2062)
Q Consensus 655 AH~IKN~~Sk~~qaL~~L~a~~RLLLTGTPL 685 (2062)
||++.+... |+.+..+...++|+|||||.
T Consensus 155 aH~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 155 AHHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp GGCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred hhhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 999975443 77777788999999999996
No 56
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=1.6e-13 Score=176.32 Aligned_cols=133 Identities=23% Similarity=0.395 Sum_probs=113.1
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccc
Q 000139 1066 GKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGG 1145 (2062)
Q Consensus 1066 GKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG 1145 (2062)
.|+..|..+|..... .++|||+......+.|...|..+|+....|+|++++.+|...+++|+ ++.+.| |+.|++++
T Consensus 259 ~k~~~L~~ll~~~~~--~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~-~g~~~v-LVaTDvaa 334 (513)
T COG0513 259 EKLELLLKLLKDEDE--GRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFK-DGELRV-LVATDVAA 334 (513)
T ss_pred HHHHHHHHHHhcCCC--CeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHH-cCCCCE-EEEechhh
Confidence 477777777775433 37999999999999999999999999999999999999999999999 577777 67889999
Q ss_pred cccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHHH
Q 000139 1146 VGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQ 1205 (2062)
Q Consensus 1146 ~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~q 1205 (2062)
.||++.+.++||+||.+.++....+++||.+|.| +.=..+.|++. .-|...+.....
T Consensus 335 RGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG--~~G~ai~fv~~-~~e~~~l~~ie~ 391 (513)
T COG0513 335 RGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAG--RKGVAISFVTE-EEEVKKLKRIEK 391 (513)
T ss_pred ccCCccccceeEEccCCCCHHHheeccCccccCC--CCCeEEEEeCc-HHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 44456667776 225555555433
No 57
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.59 E-value=1.7e-13 Score=168.58 Aligned_cols=132 Identities=17% Similarity=0.222 Sum_probs=100.9
Q ss_pred hHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCC--cEEEecCCCCHHHHHHH----HHHHhcCCCceEEEEe
Q 000139 1067 KLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGY--TYMRLDGSTQPEERQTL----MQRFNTNPKIFLFILS 1140 (2062)
Q Consensus 1067 KLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi--~y~RLDGsTs~eqRq~l----merFN~D~~IfVfLLS 1140 (2062)
|...+..++..+ ..+.++|||++.....+.+...|...+. .+..++|.++..+|... ++.|.+ +..+| |++
T Consensus 208 ~~~~l~~l~~~~-~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~-~~~~i-lva 284 (358)
T TIGR01587 208 EISSLERLLEFI-KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKK-NEKFV-IVA 284 (358)
T ss_pred CHHHHHHHHHHh-hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcC-CCCeE-EEE
Confidence 344455555433 3467999999999999999999988776 48899999999999764 888975 45555 789
Q ss_pred ccccccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcC----cEEEEEEEeCC---CHHHHHHHHHH
Q 000139 1141 TRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTR----EVHIYRLISES---TIEENILKKAN 1204 (2062)
Q Consensus 1141 TrAGG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTR----dV~VYRLIse~---TIEE~Ilkka~ 1204 (2062)
|.+.+.|||+ .+++||.++.+ +....|++||++|.|... .|.||.....+ .....++.+-.
T Consensus 285 T~~~~~GiDi-~~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~t~ 352 (358)
T TIGR01587 285 TQVIEASLDI-SADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEGKLFPYPYELVERTI 352 (358)
T ss_pred Ccchhceecc-CCCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCCCeecCCHHHHHHHH
Confidence 9999999999 58999998765 788899999999999764 35665555444 44555555533
No 58
>PRK00254 ski2-like helicase; Provisional
Probab=99.58 E-value=3.3e-13 Score=180.27 Aligned_cols=150 Identities=21% Similarity=0.205 Sum_probs=103.2
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHH-HHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCC-C
Q 000139 523 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIA-MLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCP-A 599 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIA-LLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw~P-~ 599 (2062)
..|+|+|..++.-. +..+.+.|++-.+|.|||+.+.. ++.++.. . .+.+|+|+|. .++.|+...|.+|.. +
T Consensus 22 ~~l~~~Q~~ai~~~---~~~g~nvlv~apTGsGKT~~~~l~il~~l~~-~--~~~~l~l~P~~aLa~q~~~~~~~~~~~g 95 (720)
T PRK00254 22 EELYPPQAEALKSG---VLEGKNLVLAIPTASGKTLVAEIVMVNKLLR-E--GGKAVYLVPLKALAEEKYREFKDWEKLG 95 (720)
T ss_pred CCCCHHHHHHHHHH---HhCCCcEEEECCCCcHHHHHHHHHHHHHHHh-c--CCeEEEEeChHHHHHHHHHHHHHHhhcC
Confidence 35899999999632 23578999999999999999844 4444332 2 3589999998 578889988888753 5
Q ss_pred CeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhh--hhccCeeEEEEcCccccCCh--hhHHHHHHHcc-cC
Q 000139 600 FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKV--FKRKKWKYLILDEAHLIKNW--KSQRWQTLLNF-NS 674 (2062)
Q Consensus 600 lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~--L~r~~W~lVILDEAH~IKN~--~Sk~~qaL~~L-~a 674 (2062)
+++..++|...... .|. ..++|+|+|++.+...... ..-.+.++||+||+|.+... .......+..+ ..
T Consensus 96 ~~v~~~~Gd~~~~~----~~~--~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~~~ 169 (720)
T PRK00254 96 LRVAMTTGDYDSTD----EWL--GKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHMLGR 169 (720)
T ss_pred CEEEEEeCCCCCch----hhh--ccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHHHHhcCcC
Confidence 78888888754321 122 4578999999876432210 01135789999999999643 33333344444 34
Q ss_pred ceEEEEeccC
Q 000139 675 KRRILLTGTP 684 (2062)
Q Consensus 675 ~~RLLLTGTP 684 (2062)
.+.++||||.
T Consensus 170 ~qiI~lSATl 179 (720)
T PRK00254 170 AQILGLSATV 179 (720)
T ss_pred CcEEEEEccC
Confidence 5789999996
No 59
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.58 E-value=8.2e-14 Score=164.40 Aligned_cols=124 Identities=20% Similarity=0.330 Sum_probs=110.1
Q ss_pred hHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccccc
Q 000139 1067 KLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGV 1146 (2062)
Q Consensus 1067 KLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~ 1146 (2062)
|-.+|..||..+ .|.-+||||....+.+.|.-+|+.+|+....|+|.++...|--.++.|++ +...| |++|+.|+.
T Consensus 287 K~~yLV~ll~e~--~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~-~~r~i-Lv~TDVaSR 362 (476)
T KOG0330|consen 287 KDTYLVYLLNEL--AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKA-GARSI-LVCTDVASR 362 (476)
T ss_pred cchhHHHHHHhh--cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhc-cCCcE-EEecchhcc
Confidence 444566777755 45799999999999999999999999999999999999999999999987 33444 789999999
Q ss_pred ccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHH
Q 000139 1147 GINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIE 1196 (2062)
Q Consensus 1147 GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIE 1196 (2062)
||+.+.+|.||.||-|-+-.....|.||..|-| |.-.+..||+..-||
T Consensus 363 GLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG--rsG~~ItlVtqyDve 410 (476)
T KOG0330|consen 363 GLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG--RSGKAITLVTQYDVE 410 (476)
T ss_pred cCCCCCceEEEecCCCCcHHHHHHHcccccccC--CCcceEEEEehhhhH
Confidence 999999999999999999999999999999999 778888999985554
No 60
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.57 E-value=5.4e-13 Score=175.43 Aligned_cols=105 Identities=21% Similarity=0.367 Sum_probs=87.2
Q ss_pred hCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHH-----HHHHHHhc----CC-----CceEEEEeccccc
Q 000139 1080 SDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQ-----TLMQRFNT----NP-----KIFLFILSTRSGG 1145 (2062)
Q Consensus 1080 s~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq-----~lmerFN~----D~-----~IfVfLLSTrAGG 1145 (2062)
..+.+||||++.....+.|...|...|+ ..|+|.++..+|. .++++|.. .. .-..+|++|.+.+
T Consensus 270 e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVae 347 (844)
T TIGR02621 270 DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGE 347 (844)
T ss_pred hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhh
Confidence 3567999999999999999999998887 8899999999999 78999975 11 1134589999999
Q ss_pred cccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCc--EEEEEE
Q 000139 1146 VGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTRE--VHIYRL 1189 (2062)
Q Consensus 1146 ~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRd--V~VYRL 1189 (2062)
.||++.. ++||+++.++ ....||+|||+|.|.... ++|+.+
T Consensus 348 rGLDId~-d~VI~d~aP~--esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 348 VGVNISA-DHLVCDLAPF--ESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred hcccCCc-ceEEECCCCH--HHHHHHhcccCCCCCCCCceEEEEee
Confidence 9999975 9999988764 688999999999998644 444433
No 61
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.56 E-value=2.1e-13 Score=177.75 Aligned_cols=129 Identities=19% Similarity=0.225 Sum_probs=107.1
Q ss_pred ccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000139 1064 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1143 (2062)
Q Consensus 1064 dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrA 1143 (2062)
...|+.++...+.++...|..|||||......+.|...|...|+++..|+|.+...+|..+..+|+. .. ++++|..
T Consensus 406 ~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~---g~-VlIATdm 481 (762)
T TIGR03714 406 LPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQK---GA-VTVATSM 481 (762)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCC---Ce-EEEEccc
Confidence 4579999999999988889999999999999999999999999999999999997777666666543 23 4789999
Q ss_pred cccccCcc---------cCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHH
Q 000139 1144 GGVGINLV---------GADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKK 1202 (2062)
Q Consensus 1144 GG~GLNLT---------~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkk 1202 (2062)
+|.|+++. +.+.||.|+++-+. .+.|+.||++|.|..-.+ +-|++ .|+.++.+
T Consensus 482 AgRGtDI~l~~~v~~~GGL~vIit~~~ps~r-id~qr~GRtGRqG~~G~s--~~~is---~eD~l~~~ 543 (762)
T TIGR03714 482 AGRGTDIKLGKGVAELGGLAVIGTERMENSR-VDLQLRGRSGRQGDPGSS--QFFVS---LEDDLIKR 543 (762)
T ss_pred cccccCCCCCccccccCCeEEEEecCCCCcH-HHHHhhhcccCCCCceeE--EEEEc---cchhhhhh
Confidence 99999998 88999999999665 559999999999975443 33444 36666654
No 62
>PF07529 HSA: HSA; InterPro: IPR006562 This domain of unknown function is found in helicases and other DNA-binding proteins of eukaryotes [].
Probab=99.51 E-value=3.4e-14 Score=136.40 Aligned_cols=72 Identities=46% Similarity=0.790 Sum_probs=65.5
Q ss_pred cCCCCCCCCCCchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHH-HHHHHHHHHHH
Q 000139 23 EAPREPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKKVALRASKGMLDQASRGEKKLK-EEEQRLRKVAV 94 (2062)
Q Consensus 23 ~~~~ep~r~k~hwd~lleEm~wma~df~~Er~wk~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~r~ia~ 94 (2062)
++..+|++++|||||||+||.||+.||.+||+||++.|++||.+|+.||...+...++..+ ++..|++.+++
T Consensus 1 qk~~~~~r~k~h~d~lL~e~~w~a~df~~e~k~k~~~a~k~a~~v~~~~~~~~~~~~k~~er~~k~Rlr~L~~ 73 (73)
T PF07529_consen 1 QKQEEPKRQKTHHDHLLEEMLWMAKDFKEERKWKRARAKKLAKAVAQYHKNREKEEQKRIEREEKQRLRALKS 73 (73)
T ss_pred CCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhC
Confidence 3567999999999999999999999999999999999999999999999998888877777 77888888763
No 63
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.50 E-value=4.6e-12 Score=167.49 Aligned_cols=158 Identities=20% Similarity=0.122 Sum_probs=108.4
Q ss_pred CCCCCcHHHHHHHHHHHHHhhc------CCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHH
Q 000139 521 LKFPLREYQHIGLDWLVTMYEK------RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEF 593 (2062)
Q Consensus 521 Lk~~LRpYQ~~GL~WLv~l~~~------~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Ef 593 (2062)
++.-.|.||..+|+-++....+ ..+|+|.+.+|.|||++++.++..+... ....++|||||. .|..||..+|
T Consensus 235 ~k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~-~~~~~vl~lvdR~~L~~Q~~~~f 313 (667)
T TIGR00348 235 TKPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL-LKNPKVFFVVDRRELDYQLMKEF 313 (667)
T ss_pred eeeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh-cCCCeEEEEECcHHHHHHHHHHH
Confidence 3455899999999998877654 3589999999999999999888777643 334578999997 5899999999
Q ss_pred HHHCCCCeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhch-hhhhcc----CeeEEEEcCccccCChhhHHHHH
Q 000139 594 LKWCPAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDS-KVFKRK----KWKYLILDEAHLIKNWKSQRWQT 668 (2062)
Q Consensus 594 kkw~P~lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~-~~L~r~----~W~lVILDEAH~IKN~~Sk~~qa 668 (2062)
..+.+... .-.++..... . ........|+|||++.+.... ..+... ...+||+||||+... ......
T Consensus 314 ~~~~~~~~--~~~~s~~~L~--~--~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~--~~~~~~ 385 (667)
T TIGR00348 314 QSLQKDCA--ERIESIAELK--R--LLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY--GELAKN 385 (667)
T ss_pred HhhCCCCC--cccCCHHHHH--H--HHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc--hHHHHH
Confidence 99875311 1112221111 1 112234679999999997521 111111 223899999998742 223344
Q ss_pred HH-cccCceEEEEeccCCCC
Q 000139 669 LL-NFNSKRRILLTGTPLQN 687 (2062)
Q Consensus 669 L~-~L~a~~RLLLTGTPLQN 687 (2062)
++ .++..++++|||||+..
T Consensus 386 l~~~~p~a~~lGfTaTP~~~ 405 (667)
T TIGR00348 386 LKKALKNASFFGFTGTPIFK 405 (667)
T ss_pred HHhhCCCCcEEEEeCCCccc
Confidence 43 46778999999999864
No 64
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.47 E-value=7.2e-12 Score=164.96 Aligned_cols=131 Identities=18% Similarity=0.217 Sum_probs=109.6
Q ss_pred ccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000139 1064 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1143 (2062)
Q Consensus 1064 dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrA 1143 (2062)
...|+.+|..++......+.+|||||......+.|...|...|+++..|+|.+...+|..+...|.. + . ++++|..
T Consensus 410 ~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~-g--~-VlIATdm 485 (790)
T PRK09200 410 LDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQK-G--A-VTVATNM 485 (790)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCC-C--e-EEEEccc
Confidence 3569999999998887789999999999999999999999999999999999887777766666653 2 3 4789999
Q ss_pred cccccCc---ccCC-----EEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHH
Q 000139 1144 GGVGINL---VGAD-----TVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKA 1203 (2062)
Q Consensus 1144 GG~GLNL---T~AD-----tVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka 1203 (2062)
+|.|+++ .+.. +||.||.+-|+..+.|+.||++|.|..-... -|+ |.|+.++.+-
T Consensus 486 AgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~--~~i---s~eD~l~~~~ 548 (790)
T PRK09200 486 AGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQ--FFI---SLEDDLLKRF 548 (790)
T ss_pred hhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEE--EEE---cchHHHHHhh
Confidence 9999999 4666 9999999999999999999999999764432 334 3477777653
No 65
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.43 E-value=1.3e-12 Score=143.90 Aligned_cols=158 Identities=23% Similarity=0.309 Sum_probs=114.4
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCCC--
Q 000139 523 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCPA-- 599 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw~P~-- 599 (2062)
.++++||..++..+.... .++++...+|+|||..++.++....... ..+++|||+|+ .+..||..++..+++.
T Consensus 7 ~~~~~~Q~~~~~~~~~~~---~~~~i~~~~GsGKT~~~~~~~~~~~~~~-~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 82 (201)
T smart00487 7 EPLRPYQKEAIEALLSGL---RDVILAAPTGSGKTLAALLPALEALKRG-KGKRVLVLVPTRELAEQWAEELKKLGPSLG 82 (201)
T ss_pred CCCCHHHHHHHHHHHcCC---CcEEEECCCCCchhHHHHHHHHHHhccc-CCCcEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 578999999999887521 7889999999999998777777665432 24689999995 6789999999998876
Q ss_pred -CeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhh--hhccCeeEEEEcCccccCC-hhhHHHHH-HHcc-c
Q 000139 600 -FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKV--FKRKKWKYLILDEAHLIKN-WKSQRWQT-LLNF-N 673 (2062)
Q Consensus 600 -lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~--L~r~~W~lVILDEAH~IKN-~~Sk~~qa-L~~L-~ 673 (2062)
.....+.+.......... ....++|+++||..+...... +...+|++||+||||++.+ .....+.. +..+ .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~ 159 (201)
T smart00487 83 LKVVGLYGGDSKREQLRKL---ESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPK 159 (201)
T ss_pred eEEEEEeCCcchHHHHHHH---hcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCc
Confidence 345555554433322221 113348999999988876554 4556789999999999985 33334433 3444 5
Q ss_pred CceEEEEeccCCCC
Q 000139 674 SKRRILLTGTPLQN 687 (2062)
Q Consensus 674 a~~RLLLTGTPLQN 687 (2062)
..+++++||||..+
T Consensus 160 ~~~~v~~saT~~~~ 173 (201)
T smart00487 160 NVQLLLLSATPPEE 173 (201)
T ss_pred cceEEEEecCCchh
Confidence 78999999999744
No 66
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.43 E-value=8.9e-12 Score=150.94 Aligned_cols=129 Identities=19% Similarity=0.292 Sum_probs=102.1
Q ss_pred HHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHH----HcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccccc
Q 000139 1071 LAILLRKLKSDGHRALIFTQMTKMLDILEEFIS----LYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGV 1146 (2062)
Q Consensus 1071 L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~----~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~ 1146 (2062)
+..+|+. ....|+|+|+.......-|...|+ ..++.+-.+.|+.+...|.+++.+|+. ++|.|+ +++++.+.
T Consensus 420 ~~~lI~~--~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~-g~i~vL-IcSD~laR 495 (620)
T KOG0350|consen 420 VYALITS--NKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAK-GDINVL-ICSDALAR 495 (620)
T ss_pred HHHHHHH--hhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhc-CCceEE-Eehhhhhc
Confidence 3444443 246799999999887777766665 345666679999999999999999997 678885 55689999
Q ss_pred ccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHH
Q 000139 1147 GINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKR 1207 (2062)
Q Consensus 1147 GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~qKr 1207 (2062)
||++-+.+.||.||||-.-.....|+||..|-|| .-+.|.|+... |++.+.+...|.
T Consensus 496 GiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq--~G~a~tll~~~--~~r~F~klL~~~ 552 (620)
T KOG0350|consen 496 GIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQ--DGYAITLLDKH--EKRLFSKLLKKT 552 (620)
T ss_pred CCcccccceEeecCCCchhhHHHHhhcccccccC--CceEEEeeccc--cchHHHHHHHHh
Confidence 9999999999999999999999999999999997 45677788776 556665544443
No 67
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.42 E-value=4.7e-11 Score=156.51 Aligned_cols=126 Identities=12% Similarity=0.208 Sum_probs=94.6
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHHc--CCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEEE
Q 000139 1081 DGHRALIFTQMTKMLDILEEFISLY--GYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIF 1158 (2062)
Q Consensus 1081 ~GhKVLIFSQ~t~mLDILe~~L~~~--Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIf 1158 (2062)
.+.++|||..-....+.+...|... ++.++.|+|.++. +++.+++|..+++..| |++|..++.||++.+.++||-
T Consensus 394 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq--~eq~l~~ff~~gk~kI-LVATdIAERGIDIp~V~~VID 470 (675)
T PHA02653 394 KGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPN--IDEILEKVYSSKNPSI-IISTPYLESSVTIRNATHVYD 470 (675)
T ss_pred cCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCH--HHHHHHHHhccCceeE-EeccChhhccccccCeeEEEE
Confidence 3568999999999999999999877 7999999999984 5677788854455555 799999999999999999999
Q ss_pred ecCCC------------ChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHh
Q 000139 1159 YDSDW------------NPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQ 1215 (2062)
Q Consensus 1159 yD~dW------------NPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~qKr~L~~~vIq 1215 (2062)
++... +.+.-.||.||++|. ++-.+|||+++....- |.+. ....|...|++
T Consensus 471 ~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~G~c~rLyt~~~~~p-I~ri--~~~~L~~~vL~ 533 (675)
T PHA02653 471 TGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---SPGTYVYFYDLDLLKP-IKRI--DSEFLHNYILY 533 (675)
T ss_pred CCCccCCCcccCcccccCHHHHHHhccCcCCC---CCCeEEEEECHHHhHH-HHHH--hHHHHHHHHHH
Confidence 97222 444556666666665 6899999999987532 2221 12235666654
No 68
>PRK09401 reverse gyrase; Reviewed
Probab=99.41 E-value=8.2e-12 Score=171.93 Aligned_cols=102 Identities=19% Similarity=0.194 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHhhhCCCeEEEEeCchHH---HHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEe---
Q 000139 1067 KLQELAILLRKLKSDGHRALIFTQMTKM---LDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILS--- 1140 (2062)
Q Consensus 1067 KLq~L~~LLrkLks~GhKVLIFSQ~t~m---LDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLS--- 1140 (2062)
|...|..+|..+ |..+|||++.... ++.|..+|+.+|+.+..++|++ ...+++|.+ +++.|+|.+
T Consensus 316 k~~~L~~ll~~l---~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~-G~~~VLVatas~ 386 (1176)
T PRK09401 316 SVEKLVELVKRL---GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEE-GEVDVLVGVASY 386 (1176)
T ss_pred HHHHHHHHHHhc---CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHC-CCCCEEEEecCC
Confidence 566677777655 4589999998766 9999999999999999999999 234599985 778887776
Q ss_pred ccccccccCccc-CCEEEEecCCC------ChhhHHHHHHhhhc
Q 000139 1141 TRSGGVGINLVG-ADTVIFYDSDW------NPAMDQQAQDRCHR 1177 (2062)
Q Consensus 1141 TrAGG~GLNLT~-ADtVIfyD~dW------NPa~d~QA~gRahR 1177 (2062)
|..++.||++.. ..+|||||.|- .......+++|.-+
T Consensus 387 tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 387 YGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred CCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 789999999998 89999999986 44455566666653
No 69
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.41 E-value=2.3e-11 Score=158.05 Aligned_cols=130 Identities=18% Similarity=0.217 Sum_probs=110.5
Q ss_pred cchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccc
Q 000139 1065 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSG 1144 (2062)
Q Consensus 1065 SGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAG 1144 (2062)
..|+.++...+.++...|..|||||......+.|...|..+|+++..|+|. ..+|...+..|.. ....| +++|..+
T Consensus 388 ~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag-~~g~V-tIATnmA 463 (745)
T TIGR00963 388 EEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAG-RKGAV-TIATNMA 463 (745)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcC-CCceE-EEEeccc
Confidence 469999999998889999999999999999999999999999999999998 6689999999964 33444 7889999
Q ss_pred ccccCccc-------CCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHH
Q 000139 1145 GVGINLVG-------ADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKA 1203 (2062)
Q Consensus 1145 G~GLNLT~-------ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka 1203 (2062)
|.|+++.. .-+||.++.+-|+..+.|+.||++|.|..-.... |++ .|+.++.+.
T Consensus 464 gRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~--~ls---~eD~l~~~~ 524 (745)
T TIGR00963 464 GRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRF--FLS---LEDNLMRIF 524 (745)
T ss_pred cCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEE--EEe---ccHHHHHhh
Confidence 99999876 6799999999999999999999999998755443 333 355666543
No 70
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.40 E-value=3.9e-13 Score=129.65 Aligned_cols=78 Identities=35% Similarity=0.601 Sum_probs=72.4
Q ss_pred HHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEEEecCCCChhhHHHHHHhhhccC
Q 000139 1100 EFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIG 1179 (2062)
Q Consensus 1100 ~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIG 1179 (2062)
.+|+..|+.+..++|.++..+|+.+++.|+... .. +|++|.++++|||++.+++||+|+++||+....|++|||+|+|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~-~~-vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGE-IR-VLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTS-SS-EEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccC-ce-EEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 478999999999999999999999999999743 34 4778899999999999999999999999999999999999998
No 71
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.40 E-value=2.1e-11 Score=168.57 Aligned_cols=96 Identities=19% Similarity=0.204 Sum_probs=83.8
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHHcC---------------------------------CcEEEecCCCCHHHHHHHHHH
Q 000139 1081 DGHRALIFTQMTKMLDILEEFISLYG---------------------------------YTYMRLDGSTQPEERQTLMQR 1127 (2062)
Q Consensus 1081 ~GhKVLIFSQ~t~mLDILe~~L~~~G---------------------------------i~y~RLDGsTs~eqRq~lmer 1127 (2062)
.+.++|||++..+..+.|...|+..+ +....++|+++.++|..+.+.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 36789999999999999998887532 113467899999999999999
Q ss_pred HhcCCCceEEEEeccccccccCcccCCEEEEecCCCChhhHHHHHHhhhcc
Q 000139 1128 FNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRI 1178 (2062)
Q Consensus 1128 FN~D~~IfVfLLSTrAGG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRI 1178 (2062)
|.+ +.++| |++|.+...|||+...|.||.|++|.+.....|++||++|-
T Consensus 323 fK~-G~Lrv-LVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 323 LKS-GELRC-VVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHh-CCceE-EEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 986 67776 68899999999999999999999999999999999999984
No 72
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.39 E-value=2.4e-10 Score=148.16 Aligned_cols=132 Identities=19% Similarity=0.285 Sum_probs=107.1
Q ss_pred ccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000139 1064 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1143 (2062)
Q Consensus 1064 dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrA 1143 (2062)
...|+.+|..++..+...|..||||+......+.|...|...|+++..|+|... +|+..+..|...+ .. ++++|..
T Consensus 455 ~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~-g~-VlVATdm 530 (656)
T PRK12898 455 AAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQR-GR-ITVATNM 530 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCC-Cc-EEEEccc
Confidence 346999999999988777889999999999999999999999999999999865 6666666665322 23 5789999
Q ss_pred cccccCcc---cCC-----EEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHH
Q 000139 1144 GGVGINLV---GAD-----TVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAN 1204 (2062)
Q Consensus 1144 GG~GLNLT---~AD-----tVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~ 1204 (2062)
+|.|+++. ... +||.||.+=|+..+.|++||++|.|..- ..+-|++ .|+.++.+-.
T Consensus 531 AgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G--~s~~~is---~eD~l~~~~~ 594 (656)
T PRK12898 531 AGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPG--SYEAILS---LEDDLLQSFL 594 (656)
T ss_pred hhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCe--EEEEEec---hhHHHHHhhh
Confidence 99999987 333 9999999999999999999999999653 3333443 4777776643
No 73
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.38 E-value=2.5e-12 Score=133.31 Aligned_cols=136 Identities=23% Similarity=0.261 Sum_probs=100.9
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHH-HHHHHHHHCC-CCeEEEEeCChhhHHhhhhccCCC
Q 000139 545 NGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLN-WETEFLKWCP-AFKILTYFGSAKERKFKRQGWLKP 622 (2062)
Q Consensus 545 gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~Q-W~~Efkkw~P-~lkVl~y~Gs~kerk~~r~gw~k~ 622 (2062)
+++|...+|.|||.+++.++..+... +..+++|||||...+.+ |...+.+|.. ...+..+++......... ...
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~-~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 77 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDS-LKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEK---LLS 77 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhc-ccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHH---Hhc
Confidence 67999999999999999999887654 34578999999976555 5666777775 566666666554443221 112
Q ss_pred CCceEEEEehhhhhhchhh--hhccCeeEEEEcCccccCChhhHHH---HHHHcccCceEEEEeccC
Q 000139 623 NSFHVCITTYRLIIQDSKV--FKRKKWKYLILDEAHLIKNWKSQRW---QTLLNFNSKRRILLTGTP 684 (2062)
Q Consensus 623 ~~fdVVITSYe~l~~d~~~--L~r~~W~lVILDEAH~IKN~~Sk~~---qaL~~L~a~~RLLLTGTP 684 (2062)
...+|+|+||+.+...... +....|++||+||+|.+.+...... .........+++++||||
T Consensus 78 ~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 78 GKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 4678999999988765433 2345799999999999988765543 344456778999999998
No 74
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.34 E-value=2.7e-11 Score=149.28 Aligned_cols=122 Identities=17% Similarity=0.246 Sum_probs=103.3
Q ss_pred hHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccccc
Q 000139 1067 KLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGV 1146 (2062)
Q Consensus 1067 KLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~ 1146 (2062)
|++.|..++..+. =...|||+....-.+-|..+|...|+.+..|.|.|+..+|..+|+.+.+ -.++| |+||+..+.
T Consensus 259 klq~L~~vf~~ip--y~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~-f~~rI-LVsTDLtaR 334 (980)
T KOG4284|consen 259 KLQKLTHVFKSIP--YVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRA-FRVRI-LVSTDLTAR 334 (980)
T ss_pred HHHHHHHHHhhCc--hHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhh-ceEEE-EEecchhhc
Confidence 5555555555542 2367899999888999999999999999999999999999999999875 56766 789999999
Q ss_pred ccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCC
Q 000139 1147 GINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISES 1193 (2062)
Q Consensus 1147 GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~ 1193 (2062)
||+-..+|-||.+|++-|......||||++|+|- +-..|..+..+.
T Consensus 335 GIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~-~G~aVT~~~~~~ 380 (980)
T KOG4284|consen 335 GIDADNVNLVVNIDAPADEETYFHRIGRAGRFGA-HGAAVTLLEDER 380 (980)
T ss_pred cCCccccceEEecCCCcchHHHHHHhhhcccccc-cceeEEEeccch
Confidence 9999999999999999999999999999999995 566666565553
No 75
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.33 E-value=2.4e-10 Score=141.36 Aligned_cols=85 Identities=21% Similarity=0.301 Sum_probs=69.8
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHHcC--CcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEEE
Q 000139 1081 DGHRALIFTQMTKMLDILEEFISLYG--YTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIF 1158 (2062)
Q Consensus 1081 ~GhKVLIFSQ~t~mLDILe~~L~~~G--i~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIf 1158 (2062)
.|.|+|||++.....+.|...|...| +.+..++|.++..+|.+.+ ++. +|++|.+.+.||++.. +.||
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~-------~~~-iLVaTdv~~rGiDi~~-~~vi- 340 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM-------QFD-ILLGTSTVDVGVDFKR-DWLI- 340 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc-------cCC-EEEEecHHhcccCCCC-ceEE-
Confidence 57899999999999999999998765 5788999999998887653 333 5789999999999975 5776
Q ss_pred ecCCCChhhHHHHHHhhh
Q 000139 1159 YDSDWNPAMDQQAQDRCH 1176 (2062)
Q Consensus 1159 yD~dWNPa~d~QA~gRah 1176 (2062)
++ +-++....||+||++
T Consensus 341 ~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred EC-CCCHHHHhhhcccCC
Confidence 56 457788888888874
No 76
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.32 E-value=1.1e-10 Score=148.63 Aligned_cols=108 Identities=24% Similarity=0.286 Sum_probs=96.3
Q ss_pred CCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEEEecC
Q 000139 1082 GHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDS 1161 (2062)
Q Consensus 1082 GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIfyD~ 1161 (2062)
+...|||+...+..+-|..+|+..|+....++|++..++|+..-++|+++ ++.| |+.|.|-|.|||=...-.||+||.
T Consensus 230 ~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~-~~~i-iVAT~AFGMGIdKpdVRfViH~~l 307 (590)
T COG0514 230 SKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLND-EIKV-MVATNAFGMGIDKPDVRFVIHYDL 307 (590)
T ss_pred CCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcC-CCcE-EEEeccccCccCCCCceEEEEecC
Confidence 44579999999999999999999999999999999999999999999974 4555 688999999999999999999999
Q ss_pred CCChhhHHHHHHhhhccCCcCcEEEEEEEeCC
Q 000139 1162 DWNPAMDQQAQDRCHRIGQTREVHIYRLISES 1193 (2062)
Q Consensus 1162 dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~ 1193 (2062)
|=+....-|=+||++|-|..-.+. -|.+..
T Consensus 308 P~s~EsYyQE~GRAGRDG~~a~ai--ll~~~~ 337 (590)
T COG0514 308 PGSIESYYQETGRAGRDGLPAEAI--LLYSPE 337 (590)
T ss_pred CCCHHHHHHHHhhccCCCCcceEE--Eeeccc
Confidence 999999999999999999765544 355544
No 77
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.32 E-value=3.4e-10 Score=148.78 Aligned_cols=124 Identities=22% Similarity=0.179 Sum_probs=101.2
Q ss_pred HHHhhhCCCeEEEEeCchHHHHHHHHHHHHcC-CcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccC
Q 000139 1075 LRKLKSDGHRALIFTQMTKMLDILEEFISLYG-YTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGA 1153 (2062)
Q Consensus 1075 LrkLks~GhKVLIFSQ~t~mLDILe~~L~~~G-i~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~A 1153 (2062)
|..+......+|||++-..+...|...|+..+ ..+..=+||.+.++|...-++|.+ +.+++ +++|.+...||+.-..
T Consensus 246 i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~-G~lra-vV~TSSLELGIDiG~v 323 (814)
T COG1201 246 IAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKE-GELKA-VVATSSLELGIDIGDI 323 (814)
T ss_pred HHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhc-CCceE-EEEccchhhccccCCc
Confidence 33333444589999999999999999998887 788888999999999999999987 55888 5677899999999999
Q ss_pred CEEEEecCCCChhhHHHHHHhhh-ccCCcCcEEEEEEEeCCCHHHHHHHHHH
Q 000139 1154 DTVIFYDSDWNPAMDQQAQDRCH-RIGQTREVHIYRLISESTIEENILKKAN 1204 (2062)
Q Consensus 1154 DtVIfyD~dWNPa~d~QA~gRah-RIGQTRdV~VYRLIse~TIEE~Ilkka~ 1204 (2062)
|.||.|-+|-.-+...|++||++ |+|. |.-+++|+.+ .++.+--.+.
T Consensus 324 dlVIq~~SP~sV~r~lQRiGRsgHr~~~---~Skg~ii~~~-r~dllE~~vi 371 (814)
T COG1201 324 DLVIQLGSPKSVNRFLQRIGRAGHRLGE---VSKGIIIAED-RDDLLECLVL 371 (814)
T ss_pred eEEEEeCCcHHHHHHhHhccccccccCC---cccEEEEecC-HHHHHHHHHH
Confidence 99999999999999999999985 5554 4455666766 5655544433
No 78
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=5.9e-11 Score=135.43 Aligned_cols=108 Identities=22% Similarity=0.339 Sum_probs=97.4
Q ss_pred eEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEEEecCCC
Q 000139 1084 RALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDW 1163 (2062)
Q Consensus 1084 KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIfyD~dW 1163 (2062)
.++||++-.+..|+|..-|...++.+..++|.++.++|.++|..|.. +.-+| |++|..-+.||+++..+.||.||.|-
T Consensus 268 QavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRs-g~Srv-LitTDVwaRGiDv~qVslviNYDLP~ 345 (400)
T KOG0328|consen 268 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRS-GKSRV-LITTDVWARGIDVQQVSLVINYDLPN 345 (400)
T ss_pred eEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhc-CCceE-EEEechhhccCCcceeEEEEecCCCc
Confidence 68999999999999999999999999999999999999999999987 45566 78999999999999999999999999
Q ss_pred ChhhHHHHHHhhhccCCcCcEEEEEEEeCCCH
Q 000139 1164 NPAMDQQAQDRCHRIGQTREVHIYRLISESTI 1195 (2062)
Q Consensus 1164 NPa~d~QA~gRahRIGQTRdV~VYRLIse~TI 1195 (2062)
|+.....++||.+|.|.+ -.+..||...-+
T Consensus 346 nre~YIHRIGRSGRFGRk--GvainFVk~~d~ 375 (400)
T KOG0328|consen 346 NRELYIHRIGRSGRFGRK--GVAINFVKSDDL 375 (400)
T ss_pred cHHHHhhhhccccccCCc--ceEEEEecHHHH
Confidence 999999999999999964 344567765533
No 79
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.30 E-value=2.3e-10 Score=151.65 Aligned_cols=153 Identities=16% Similarity=0.180 Sum_probs=104.7
Q ss_pred CCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCCCC
Q 000139 522 KFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCPAF 600 (2062)
Q Consensus 522 k~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw~P~l 600 (2062)
...|+++|..+++.+.... .+...+|.-.+|.|||...+.++...... | +.+||+||+ .+..||...|+++++ .
T Consensus 142 ~~~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~-g--~~vLvLvPt~~L~~Q~~~~l~~~fg-~ 216 (679)
T PRK05580 142 PPTLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQ-G--KQALVLVPEIALTPQMLARFRARFG-A 216 (679)
T ss_pred CCCCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHc-C--CeEEEEeCcHHHHHHHHHHHHHHhC-C
Confidence 3579999999999887643 34567888999999999988776655432 2 479999998 588999999998774 6
Q ss_pred eEEEEeCChhhHHhhhhccC--CCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCCh--hh-----HHHHHHH-
Q 000139 601 KILTYFGSAKERKFKRQGWL--KPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNW--KS-----QRWQTLL- 670 (2062)
Q Consensus 601 kVl~y~Gs~kerk~~r~gw~--k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~--~S-----k~~qaL~- 670 (2062)
++.+++|...... ....|. ..+..+|||+|...+.. .-.+..+||+||+|...-. .. .....++
T Consensus 217 ~v~~~~s~~s~~~-r~~~~~~~~~g~~~IVVgTrsal~~-----p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra 290 (679)
T PRK05580 217 PVAVLHSGLSDGE-RLDEWRKAKRGEAKVVIGARSALFL-----PFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRA 290 (679)
T ss_pred CEEEEECCCCHHH-HHHHHHHHHcCCCCEEEeccHHhcc-----cccCCCEEEEECCCccccccCcCCCCcHHHHHHHHh
Confidence 7888887643321 112232 23457899999876642 2245789999999976421 11 1111111
Q ss_pred cccCceEEEEeccCC
Q 000139 671 NFNSKRRILLTGTPL 685 (2062)
Q Consensus 671 ~L~a~~RLLLTGTPL 685 (2062)
.......+++||||.
T Consensus 291 ~~~~~~~il~SATps 305 (679)
T PRK05580 291 KLENIPVVLGSATPS 305 (679)
T ss_pred hccCCCEEEEcCCCC
Confidence 224457889999995
No 80
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.28 E-value=1.1e-10 Score=161.37 Aligned_cols=130 Identities=16% Similarity=0.217 Sum_probs=91.5
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC-cHHHHHHHHHHHCCC--
Q 000139 523 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS-VMLNWETEFLKWCPA-- 599 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtS-LL~QW~~Efkkw~P~-- 599 (2062)
..+.++|..++..++. +.+.++...+|.|||..++.++..+.. . .+.+|||+|+. |+.|+...|..++..
T Consensus 77 ~~p~~iQ~~~i~~il~----G~d~vi~ApTGsGKT~f~l~~~~~l~~-~--g~~vLIL~PTreLa~Qi~~~l~~l~~~~~ 149 (1171)
T TIGR01054 77 SEPWSIQKMWAKRVLR----GDSFAIIAPTGVGKTTFGLAMSLFLAK-K--GKRCYIILPTTLLVIQVAEKISSLAEKAG 149 (1171)
T ss_pred CCCcHHHHHHHHHHhC----CCeEEEECCCCCCHHHHHHHHHHHHHh-c--CCeEEEEeCHHHHHHHHHHHHHHHHHhcC
Confidence 4579999988877665 677888999999999855544444432 2 35799999994 788899999998853
Q ss_pred Ce---EEEEeCChhhHHh-hhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCC
Q 000139 600 FK---ILTYFGSAKERKF-KRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKN 660 (2062)
Q Consensus 600 lk---Vl~y~Gs~kerk~-~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN 660 (2062)
+. ++.|+|....... ........+.++|+|+|...+......+.. ++++|||||||++-.
T Consensus 150 i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 150 VGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGP-KFDFIFVDDVDALLK 213 (1171)
T ss_pred CceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcC-CCCEEEEeChHhhhh
Confidence 23 3357775432211 101112235689999999998876555544 799999999999854
No 81
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.27 E-value=1.1e-11 Score=118.57 Aligned_cols=81 Identities=35% Similarity=0.588 Sum_probs=74.6
Q ss_pred HHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEEEecCCCChhhHHHHHHhhh
Q 000139 1097 ILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCH 1176 (2062)
Q Consensus 1097 ILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRah 1176 (2062)
.|...|+..++.+..++|.++..+|+.+++.|+... . ++|++|.+++.|+|++.+++||+++++||+....|++||++
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~-~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~ 79 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGK-I-KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAG 79 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCC-C-eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccc
Confidence 467788888999999999999999999999999743 3 56789999999999999999999999999999999999999
Q ss_pred ccC
Q 000139 1177 RIG 1179 (2062)
Q Consensus 1177 RIG 1179 (2062)
|+|
T Consensus 80 R~g 82 (82)
T smart00490 80 RAG 82 (82)
T ss_pred cCC
Confidence 987
No 82
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.26 E-value=8.5e-10 Score=134.09 Aligned_cols=121 Identities=24% Similarity=0.363 Sum_probs=102.3
Q ss_pred HHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcc
Q 000139 1072 AILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLV 1151 (2062)
Q Consensus 1072 ~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT 1151 (2062)
..|+.++. -.+++||.+......-|.-.|-..|++..-|+|+.+++||-..++.|.. ..|.| |++|..++.||++.
T Consensus 418 ~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~-~eidv-LiaTDvAsRGLDI~ 493 (691)
T KOG0338|consen 418 ASLITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKK-EEIDV-LIATDVASRGLDIE 493 (691)
T ss_pred HHHHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHh-ccCCE-EEEechhhccCCcc
Confidence 34444443 3589999999999999999999999999999999999999999999985 67777 68899999999999
Q ss_pred cCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHH
Q 000139 1152 GADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENIL 1200 (2062)
Q Consensus 1152 ~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Il 1200 (2062)
+.-+||.|+.|-.--....++||.-|-|.- -+-.-|+.++ |-+|+
T Consensus 494 gV~tVINy~mP~t~e~Y~HRVGRTARAGRa--GrsVtlvgE~--dRkll 538 (691)
T KOG0338|consen 494 GVQTVINYAMPKTIEHYLHRVGRTARAGRA--GRSVTLVGES--DRKLL 538 (691)
T ss_pred ceeEEEeccCchhHHHHHHHhhhhhhcccC--cceEEEeccc--cHHHH
Confidence 999999999999999999999999998853 3334478776 44444
No 83
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.26 E-value=3.4e-10 Score=138.43 Aligned_cols=134 Identities=20% Similarity=0.260 Sum_probs=108.8
Q ss_pred hHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHH--cCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccc
Q 000139 1067 KLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISL--YGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSG 1144 (2062)
Q Consensus 1067 KLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~--~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAG 1144 (2062)
|+..|-..|+.. -..|.|||-...+-..++...+.. .|++.+-|+|.+++.+|-.+..+|.... .++|.+|..+
T Consensus 300 Ki~~L~sFI~sh--lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~--~~vLF~TDv~ 375 (758)
T KOG0343|consen 300 KIDMLWSFIKSH--LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKR--AVVLFCTDVA 375 (758)
T ss_pred HHHHHHHHHHhc--cccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhc--ceEEEeehhh
Confidence 555666666543 235889998888888888776653 4899999999999999999999998633 3568899999
Q ss_pred ccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHH
Q 000139 1145 GVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKR 1207 (2062)
Q Consensus 1145 G~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~qKr 1207 (2062)
+.||++...|-||-||.|=+-.....|+||+-|++-.-...+|-+-+ =||.++.+.+.|.
T Consensus 376 aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~ps---EeE~~l~~Lq~k~ 435 (758)
T KOG0343|consen 376 ARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPS---EEEAMLKKLQKKK 435 (758)
T ss_pred hccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcch---hHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999877777654433 3688888866653
No 84
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.26 E-value=2.9e-10 Score=140.69 Aligned_cols=149 Identities=22% Similarity=0.321 Sum_probs=119.8
Q ss_pred chHHHHHHHHHHhh---hC----CCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEE
Q 000139 1066 GKLQELAILLRKLK---SD----GHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFI 1138 (2062)
Q Consensus 1066 GKLq~L~~LLrkLk---s~----GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfL 1138 (2062)
.|...|..+|.... .. -++++||..-.++++.|..+|...|+.|..|+|..+..+|.+.+..|.. +++.| |
T Consensus 314 ~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~-g~~pv-l 391 (482)
T KOG0335|consen 314 EKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRN-GKAPV-L 391 (482)
T ss_pred hhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhc-CCcce-E
Confidence 34455555554433 11 2599999999999999999999999999999999999999999999985 66766 6
Q ss_pred EeccccccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCC
Q 000139 1139 LSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGG 1218 (2062)
Q Consensus 1139 LSTrAGG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~qKr~L~~~vIq~g~ 1218 (2062)
+.|..+..|||..+..|||.||.|=+-..+..|+||.+|.|++--.+.+- -.. .++-...|...+.+.++
T Consensus 392 VaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~--n~~--------~~~i~~~L~~~l~ea~q 461 (482)
T KOG0335|consen 392 VATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFF--NEK--------NQNIAKALVEILTEANQ 461 (482)
T ss_pred EEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEe--ccc--------cchhHHHHHHHHHHhcc
Confidence 77899999999999999999999999999999999999999987655533 211 12334566777777788
Q ss_pred CCcccccc
Q 000139 1219 YNTEFFKK 1226 (2062)
Q Consensus 1219 ft~~~fk~ 1226 (2062)
-.+.|++.
T Consensus 462 ~vP~wl~~ 469 (482)
T KOG0335|consen 462 EVPQWLSE 469 (482)
T ss_pred cCcHHHHh
Confidence 78888765
No 85
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.25 E-value=8e-10 Score=140.64 Aligned_cols=161 Identities=20% Similarity=0.316 Sum_probs=113.2
Q ss_pred CCCCCcHHHHHHHHHHHHHhhc--CCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcH-HHHHHHHHHHC
Q 000139 521 LKFPLREYQHIGLDWLVTMYEK--RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVM-LNWETEFLKWC 597 (2062)
Q Consensus 521 Lk~~LRpYQ~~GL~WLv~l~~~--~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL-~QW~~Efkkw~ 597 (2062)
|-+.|-..|+..++=+..-... .++=+|--|+|.|||++|+..+..... .| +-+.+.+|+.++ .|-...|.+|+
T Consensus 259 LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~-~G--~Q~ALMAPTEILA~QH~~~~~~~l 335 (677)
T COG1200 259 LPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE-AG--YQAALMAPTEILAEQHYESLRKWL 335 (677)
T ss_pred CCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH-cC--CeeEEeccHHHHHHHHHHHHHHHh
Confidence 3467889999999877654332 345578888999999988655554433 33 357889999765 56788899999
Q ss_pred C--CCeEEEEeCChhhHHh-hhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHcc-c
Q 000139 598 P--AFKILTYFGSAKERKF-KRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNF-N 673 (2062)
Q Consensus 598 P--~lkVl~y~Gs~kerk~-~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L-~ 673 (2062)
+ +++|....|+-+.... ....-...+..++||-|+.++..... | .+..+||+||=|++. ...-..|++- .
T Consensus 336 ~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~-F--~~LgLVIiDEQHRFG---V~QR~~L~~KG~ 409 (677)
T COG1200 336 EPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVE-F--HNLGLVIIDEQHRFG---VHQRLALREKGE 409 (677)
T ss_pred hhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhccee-e--cceeEEEEecccccc---HHHHHHHHHhCC
Confidence 7 5777778887654321 11122345778999999988765433 2 346899999999985 3333444444 3
Q ss_pred -CceEEEEeccCCCCChH
Q 000139 674 -SKRRILLTGTPLQNDLM 690 (2062)
Q Consensus 674 -a~~RLLLTGTPLQNsL~ 690 (2062)
.++.|.||||||..+|.
T Consensus 410 ~~Ph~LvMTATPIPRTLA 427 (677)
T COG1200 410 QNPHVLVMTATPIPRTLA 427 (677)
T ss_pred CCCcEEEEeCCCchHHHH
Confidence 57999999999987753
No 86
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.24 E-value=2.2e-09 Score=141.68 Aligned_cols=132 Identities=17% Similarity=0.242 Sum_probs=115.0
Q ss_pred ccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000139 1064 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1143 (2062)
Q Consensus 1064 dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrA 1143 (2062)
.-.|+.++...+.++...|..|||||......+.|...|...|+++..|+|.....+|+.+.+.|... . ++++|..
T Consensus 426 ~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G-~---VtIATNm 501 (896)
T PRK13104 426 QADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG-A---VTIATNM 501 (896)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC-c---EEEeccC
Confidence 45799999999999999999999999999999999999999999999999999999999999999864 2 4788999
Q ss_pred cccccCcc--------------------------------------cCCEEEEecCCCChhhHHHHHHhhhccCCcCcEE
Q 000139 1144 GGVGINLV--------------------------------------GADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVH 1185 (2062)
Q Consensus 1144 GG~GLNLT--------------------------------------~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~ 1185 (2062)
+|.|+++. |.=+||.-.-.=|--+|.|-.|||+|.|..-...
T Consensus 502 AGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~ 581 (896)
T PRK13104 502 AGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSR 581 (896)
T ss_pred ccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceE
Confidence 99998864 3348999999999999999999999999876655
Q ss_pred EEEEEeCCCHHHHHHHHHH
Q 000139 1186 IYRLISESTIEENILKKAN 1204 (2062)
Q Consensus 1186 VYRLIse~TIEE~Ilkka~ 1204 (2062)
.|- |.|+.++.+-.
T Consensus 582 f~l-----SleD~l~~~f~ 595 (896)
T PRK13104 582 FYL-----SLEDNLMRIFA 595 (896)
T ss_pred EEE-----EcCcHHHHHhC
Confidence 543 56777776543
No 87
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.23 E-value=1.3e-09 Score=131.92 Aligned_cols=119 Identities=17% Similarity=0.328 Sum_probs=102.2
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHH--cCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000139 1066 GKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISL--YGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1143 (2062)
Q Consensus 1066 GKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~--~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrA 1143 (2062)
-|++.|..+|.. ....|+|||-......++...+|.. .++..+-|+|.++..+|...++.|...++- .|++|++
T Consensus 241 eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~--vl~~TDV 316 (567)
T KOG0345|consen 241 EKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNG--VLFCTDV 316 (567)
T ss_pred HHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCc--eEEeehh
Confidence 378888888876 3567999999999999988888754 477899999999999999999999873332 4788999
Q ss_pred cccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEE
Q 000139 1144 GGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYR 1188 (2062)
Q Consensus 1144 GG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYR 1188 (2062)
++.||++.+.|.||.||||-+|.+...|.||..|.|..-.-.|+-
T Consensus 317 aARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl 361 (567)
T KOG0345|consen 317 AARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFL 361 (567)
T ss_pred hhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEe
Confidence 999999999999999999999999999999999999876665543
No 88
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.21 E-value=3.9e-10 Score=137.59 Aligned_cols=117 Identities=22% Similarity=0.379 Sum_probs=93.6
Q ss_pred HHHHHHHHhh--hCCCeEEEEeCchHHHHHHHHHH----HH------------------cCCcEEEecCCCCHHHHHHHH
Q 000139 1070 ELAILLRKLK--SDGHRALIFTQMTKMLDILEEFI----SL------------------YGYTYMRLDGSTQPEERQTLM 1125 (2062)
Q Consensus 1070 ~L~~LLrkLk--s~GhKVLIFSQ~t~mLDILe~~L----~~------------------~Gi~y~RLDGsTs~eqRq~lm 1125 (2062)
.|..+|.... ....|+|||-....+.+.=...| .. .+.++.||+|+|.+++|...+
T Consensus 411 ~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f 490 (708)
T KOG0348|consen 411 ALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVF 490 (708)
T ss_pred HHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHH
Confidence 4455554442 23458899988888876544333 22 245799999999999999999
Q ss_pred HHHhcCCCceEEEEeccccccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEE
Q 000139 1126 QRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYR 1188 (2062)
Q Consensus 1126 erFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYR 1188 (2062)
..|..+.+. +||+|++++.||+|....-||-||+|..|+....|+||.-|||-+-.-..|-
T Consensus 491 ~~Fs~~~~~--VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL 551 (708)
T KOG0348|consen 491 QEFSHSRRA--VLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFL 551 (708)
T ss_pred Hhhccccce--EEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEe
Confidence 999875554 6899999999999999999999999999999999999999999887765543
No 89
>PRK09694 helicase Cas3; Provisional
Probab=99.21 E-value=2.1e-09 Score=144.24 Aligned_cols=99 Identities=15% Similarity=0.125 Sum_probs=82.3
Q ss_pred hCCCeEEEEeCchHHHHHHHHHHHHcC---CcEEEecCCCCHHHH----HHHHHHHhcCCCc--eEEEEeccccccccCc
Q 000139 1080 SDGHRALIFTQMTKMLDILEEFISLYG---YTYMRLDGSTQPEER----QTLMQRFNTNPKI--FLFILSTRSGGVGINL 1150 (2062)
Q Consensus 1080 s~GhKVLIFSQ~t~mLDILe~~L~~~G---i~y~RLDGsTs~eqR----q~lmerFN~D~~I--fVfLLSTrAGG~GLNL 1150 (2062)
..|.+||||++.+.....+...|...+ +.+..++|.++..+| ++++++|..+++. ..+|++|.+...||++
T Consensus 558 ~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI 637 (878)
T PRK09694 558 NAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL 637 (878)
T ss_pred hcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec
Confidence 468899999999999999999998765 678999999999999 5678899543332 3458999999999999
Q ss_pred ccCCEEEEecCCCChhhHHHHHHhhhccCCc
Q 000139 1151 VGADTVIFYDSDWNPAMDQQAQDRCHRIGQT 1181 (2062)
Q Consensus 1151 T~ADtVIfyD~dWNPa~d~QA~gRahRIGQT 1181 (2062)
.+|.||....+ .....|++|||||-|..
T Consensus 638 -d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 638 -DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred -CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 57988886655 56789999999999975
No 90
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.19 E-value=2.8e-10 Score=145.95 Aligned_cols=156 Identities=21% Similarity=0.279 Sum_probs=119.7
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHhhcCC-cEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEec-CCcHHHHHHHHH
Q 000139 517 FPFLLKFPLREYQHIGLDWLVTMYEKRL-NGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVP-TSVMLNWETEFL 594 (2062)
Q Consensus 517 vP~lLk~~LRpYQ~~GL~WLv~l~~~~~-gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvP-tSLL~QW~~Efk 594 (2062)
.|......+|.||+.+++.+...+.++. ..+|...+|.|||.+||++|..|.. .+..+++|+++- ++|+.|=...|.
T Consensus 158 ~~~~s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r-~~~~KRVLFLaDR~~Lv~QA~~af~ 236 (875)
T COG4096 158 IDIDSAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIK-SGWVKRVLFLADRNALVDQAYGAFE 236 (875)
T ss_pred CcccccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHh-cchhheeeEEechHHHHHHHHHHHH
Confidence 3444556799999999999998887655 4688999999999999999998875 566789999996 578899898999
Q ss_pred HHCCCCeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhch-------hhhhccCeeEEEEcCccccCChhhHHHH
Q 000139 595 KWCPAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDS-------KVFKRKKWKYLILDEAHLIKNWKSQRWQ 667 (2062)
Q Consensus 595 kw~P~lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~-------~~L~r~~W~lVILDEAH~IKN~~Sk~~q 667 (2062)
+|.|......+..... ...++.|+|.||+++.... ..|....|++||+||||+= ..+.|+
T Consensus 237 ~~~P~~~~~n~i~~~~----------~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg---i~~~~~ 303 (875)
T COG4096 237 DFLPFGTKMNKIEDKK----------GDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG---IYSEWS 303 (875)
T ss_pred HhCCCccceeeeeccc----------CCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh---HHhhhH
Confidence 9999866655433221 1136899999999997642 2344556999999999973 234555
Q ss_pred HHHcccCceEEEEeccCCC
Q 000139 668 TLLNFNSKRRILLTGTPLQ 686 (2062)
Q Consensus 668 aL~~L~a~~RLLLTGTPLQ 686 (2062)
.++..-...+.+|||||-.
T Consensus 304 ~I~dYFdA~~~gLTATP~~ 322 (875)
T COG4096 304 SILDYFDAATQGLTATPKE 322 (875)
T ss_pred HHHHHHHHHHHhhccCccc
Confidence 6666656667777999976
No 91
>PRK14701 reverse gyrase; Provisional
Probab=99.17 E-value=1.4e-09 Score=153.15 Aligned_cols=129 Identities=14% Similarity=0.279 Sum_probs=90.4
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCC----
Q 000139 524 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCP---- 598 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw~P---- 598 (2062)
.+++.|..++..++. +...++...+|.|||+..+. ++......+ ..+|||+|+ .|+.|....|..++.
T Consensus 79 ~pt~iQ~~~i~~il~----G~d~li~APTGsGKTl~~~~-~al~~~~~g--~~aLVl~PTreLa~Qi~~~l~~l~~~~~~ 151 (1638)
T PRK14701 79 EFWSIQKTWAKRILR----GKSFSIVAPTGMGKSTFGAF-IALFLALKG--KKCYIILPTTLLVKQTVEKIESFCEKANL 151 (1638)
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEEcCCCCHHHHHHH-HHHHHHhcC--CeEEEEECHHHHHHHHHHHHHHHHhhcCC
Confidence 479999999987776 66788899999999983322 222221122 368999999 578889999988764
Q ss_pred CCeEEEEeCChhhHHhh-hhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccC
Q 000139 599 AFKILTYFGSAKERKFK-RQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIK 659 (2062)
Q Consensus 599 ~lkVl~y~Gs~kerk~~-r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IK 659 (2062)
+.++..++|........ .......+.++|+|+|...+......+...++++|||||||.+-
T Consensus 152 ~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml 213 (1638)
T PRK14701 152 DVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFL 213 (1638)
T ss_pred ceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECceecc
Confidence 35677777765432211 01112335689999999988765544444679999999999885
No 92
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.16 E-value=1.3e-09 Score=146.28 Aligned_cols=108 Identities=18% Similarity=0.187 Sum_probs=89.8
Q ss_pred CCeEEEEeCchHHHHHHHHHHHH---cCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEEE
Q 000139 1082 GHRALIFTQMTKMLDILEEFISL---YGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIF 1158 (2062)
Q Consensus 1082 GhKVLIFSQ~t~mLDILe~~L~~---~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIf 1158 (2062)
+.++|||..-...++.+...|.. .++.++.|+|+++.++|+.+++.|.. +..+| |+||..+..||++.+.++||.
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~-G~rkV-lVATnIAErgItIp~V~~VID 286 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQ-GRRKV-VLATNIAETSLTIEGIRVVID 286 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhccc-CCeEE-EEecchHhhcccccCceEEEE
Confidence 45799999999999999999976 47899999999999999999999975 44555 789999999999999999999
Q ss_pred ecCC----CChhh--------------HHHHHHhhhccCCcCcEEEEEEEeCCC
Q 000139 1159 YDSD----WNPAM--------------DQQAQDRCHRIGQTREVHIYRLISEST 1194 (2062)
Q Consensus 1159 yD~d----WNPa~--------------d~QA~gRahRIGQTRdV~VYRLIse~T 1194 (2062)
++.. |||.. -.||.||++|. ++=..|||+++..
T Consensus 287 ~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~~ 337 (819)
T TIGR01970 287 SGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEEQ 337 (819)
T ss_pred cCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHHH
Confidence 8864 56644 45766666665 7888999998753
No 93
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.15 E-value=1.3e-09 Score=144.98 Aligned_cols=149 Identities=17% Similarity=0.120 Sum_probs=107.3
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHC-CCCe
Q 000139 524 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWC-PAFK 601 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw~-P~lk 601 (2062)
.|+++|+.++.-.+. . +.|.|++-.+|.|||+++...|....... .++++.|||. +|..+=..+|.+|- -+++
T Consensus 31 el~~~qq~av~~~~~--~-~~N~li~aPTgsGKTlIA~lai~~~l~~~--~~k~vYivPlkALa~Ek~~~~~~~~~~Gir 105 (766)
T COG1204 31 ELFNPQQEAVEKGLL--S-DENVLISAPTGSGKTLIALLAILSTLLEG--GGKVVYIVPLKALAEEKYEEFSRLEELGIR 105 (766)
T ss_pred HhhHHHHHHhhcccc--C-CCcEEEEcCCCCchHHHHHHHHHHHHHhc--CCcEEEEeChHHHHHHHHHHhhhHHhcCCE
Confidence 789999999874433 2 78999999999999999887776655432 4699999997 67777888888554 3799
Q ss_pred EEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhh--hhccCeeEEEEcCccccCChh------hHHHHHHHccc
Q 000139 602 ILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKV--FKRKKWKYLILDEAHLIKNWK------SQRWQTLLNFN 673 (2062)
Q Consensus 602 Vl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~--L~r~~W~lVILDEAH~IKN~~------Sk~~qaL~~L~ 673 (2062)
|.+++|........ ...++|+||||+.+-.-... .--...++||+||+|.|.... +-.++....-.
T Consensus 106 V~~~TgD~~~~~~~------l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~ 179 (766)
T COG1204 106 VGISTGDYDLDDER------LARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNE 179 (766)
T ss_pred EEEecCCcccchhh------hccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCc
Confidence 99999987654321 25788999999987533211 122356899999999997651 22233222222
Q ss_pred CceEEEEecc
Q 000139 674 SKRRILLTGT 683 (2062)
Q Consensus 674 a~~RLLLTGT 683 (2062)
.-+.++||||
T Consensus 180 ~~rivgLSAT 189 (766)
T COG1204 180 LIRIVGLSAT 189 (766)
T ss_pred ceEEEEEeee
Confidence 3578999999
No 94
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.14 E-value=7.8e-09 Score=139.27 Aligned_cols=133 Identities=22% Similarity=0.302 Sum_probs=103.7
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHH----HHHHHcC----CcEEEecCCCCHHHHHHHHHHHhcCCCceEE
Q 000139 1066 GKLQELAILLRKLKSDGHRALIFTQMTKMLDILE----EFISLYG----YTYMRLDGSTQPEERQTLMQRFNTNPKIFLF 1137 (2062)
Q Consensus 1066 GKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe----~~L~~~G----i~y~RLDGsTs~eqRq~lmerFN~D~~IfVf 1137 (2062)
.+...+..++..+..+|-++|+|+-+...+..+. ..+...+ .....+.|++..++|..+...|.. +++.+
T Consensus 290 s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~-g~~~~- 367 (851)
T COG1205 290 SALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKE-GELLG- 367 (851)
T ss_pred chHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhc-CCccE-
Confidence 3455566677777788999999999999999886 4455555 567888999999999999999987 44544
Q ss_pred EEeccccccccCcccCCEEEEecCCC-ChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHH
Q 000139 1138 ILSTRSGGVGINLVGADTVIFYDSDW-NPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKK 1202 (2062)
Q Consensus 1138 LLSTrAGG~GLNLT~ADtVIfyD~dW-NPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkk 1202 (2062)
++||.+.-+||.+-+.+.||.+--|- .-....|+.||++|-||.-. ++-..-.+-++..++..
T Consensus 368 ~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l--~~~v~~~~~~d~yy~~~ 431 (851)
T COG1205 368 VIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESL--VLVVLRSDPLDSYYLRH 431 (851)
T ss_pred EecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCce--EEEEeCCCccchhhhhC
Confidence 68999999999999999999999877 55777899999999995433 22233366677766543
No 95
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.14 E-value=4.7e-10 Score=127.05 Aligned_cols=155 Identities=21% Similarity=0.208 Sum_probs=107.2
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHH-HHHHHHHHhc-CCCCcEEEEecC-CcHHHHHHHHHHHCC--
Q 000139 524 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTI-AMLAHLACEK-GIWGPHLIVVPT-SVMLNWETEFLKWCP-- 598 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaI-ALLa~L~~~~-g~~Gp~LIVvPt-SLL~QW~~Efkkw~P-- 598 (2062)
.|++||..++.-+.. +.+.++...+|.|||+..+ .++..+.... ...+.+|||||+ .++.||...+..+..
T Consensus 21 ~~~~~Q~~~~~~~~~----~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~ 96 (203)
T cd00268 21 KPTPIQARAIPPLLS----GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT 96 (203)
T ss_pred CCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 479999999987765 7789999999999998854 4444443321 234568999998 578889999988864
Q ss_pred CCeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchh--hhhccCeeEEEEcCccccCChh-hH-HHHHHHccc-
Q 000139 599 AFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK--VFKRKKWKYLILDEAHLIKNWK-SQ-RWQTLLNFN- 673 (2062)
Q Consensus 599 ~lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~--~L~r~~W~lVILDEAH~IKN~~-Sk-~~qaL~~L~- 673 (2062)
+.++..++|.......... +. ...+|+|+|...+..... .+.-..+.+||+||+|.+.+.. .. ....+..+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~-~~--~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~ 173 (203)
T cd00268 97 NLKVVVIYGGTSIDKQIRK-LK--RGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPK 173 (203)
T ss_pred CceEEEEECCCCHHHHHHH-hc--CCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHHHHhCCc
Confidence 5777888886654433222 11 467899999876654311 1223457899999999986543 22 222333443
Q ss_pred CceEEEEeccCC
Q 000139 674 SKRRILLTGTPL 685 (2062)
Q Consensus 674 a~~RLLLTGTPL 685 (2062)
....+++||||-
T Consensus 174 ~~~~~~~SAT~~ 185 (203)
T cd00268 174 DRQTLLFSATMP 185 (203)
T ss_pred ccEEEEEeccCC
Confidence 467899999997
No 96
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.14 E-value=1.2e-08 Score=134.22 Aligned_cols=131 Identities=16% Similarity=0.283 Sum_probs=108.0
Q ss_pred cchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccc
Q 000139 1065 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSG 1144 (2062)
Q Consensus 1065 SGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAG 1144 (2062)
..|+.+|...+......|..|||||......+.|...|...|+++..|+|.....+++.+...|... . ++++|..+
T Consensus 423 ~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g-~---VtIATnmA 498 (796)
T PRK12906 423 DSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRG-A---VTIATNMA 498 (796)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCc-e---EEEEeccc
Confidence 4699999999998888999999999999999999999999999999999998866666666655432 2 57889999
Q ss_pred ccccCcc---cCC-----EEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHH
Q 000139 1145 GVGINLV---GAD-----TVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAN 1204 (2062)
Q Consensus 1145 G~GLNLT---~AD-----tVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~ 1204 (2062)
|.|+++. +.. +||.++.+-|.-.+.|+.||++|.|..-.... |+ +.|+.++.+-.
T Consensus 499 GRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~--~~---sleD~l~~~f~ 561 (796)
T PRK12906 499 GRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRF--YL---SLEDDLMRRFG 561 (796)
T ss_pred cCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEE--EE---eccchHHHhhC
Confidence 9999984 566 99999999999999999999999998665533 22 33556665533
No 97
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.11 E-value=5.2e-09 Score=127.07 Aligned_cols=156 Identities=24% Similarity=0.350 Sum_probs=126.2
Q ss_pred cchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccc
Q 000139 1065 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSG 1144 (2062)
Q Consensus 1065 SGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAG 1144 (2062)
..||++|.+-|....+.| +||||.--....+-|...|...||.+..++|++.+.+|.+.+..|.. +++.| |+.|...
T Consensus 452 ~~Kl~wl~~~L~~f~S~g-kvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKk-k~~~V-lvatDva 528 (731)
T KOG0339|consen 452 EKKLNWLLRHLVEFSSEG-KVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKK-KRKPV-LVATDVA 528 (731)
T ss_pred HHHHHHHHHHhhhhccCC-cEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhh-cCCce-EEEeeHh
Confidence 358899999898887777 99999988888999999999999999999999999999999999986 44556 5668999
Q ss_pred ccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHH-----HHHHHHHH--HHHHHHHHHhcC
Q 000139 1145 GVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEE-----NILKKANQ--KRALDDLVIQSG 1217 (2062)
Q Consensus 1145 G~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE-----~Ilkka~q--Kr~L~~~vIq~g 1217 (2062)
..|+++...-|||+||.--.-.+-.|++||..|-|-+ -..|.||++.-.+- |.|.-+.| =..|.++++..+
T Consensus 529 argldI~~ikTVvnyD~ardIdththrigrtgRag~k--GvayTlvTeKDa~fAG~LVnnLe~agQnVP~~l~dlamk~s 606 (731)
T KOG0339|consen 529 ARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKDAEFAGHLVNNLEGAGQNVPDELMDLAMKSS 606 (731)
T ss_pred hcCCCccccceeecccccchhHHHHHHhhhccccccc--ceeeEEechhhHHHhhHHHHHHhhccccCChHHHHHHhhhh
Confidence 9999999999999999888888889999999999976 66799999886652 22332222 245666666666
Q ss_pred CCCccccc
Q 000139 1218 GYNTEFFK 1225 (2062)
Q Consensus 1218 ~ft~~~fk 1225 (2062)
.|...-|+
T Consensus 607 ~fr~~r~~ 614 (731)
T KOG0339|consen 607 WFRSSRFG 614 (731)
T ss_pred hhhhhhcc
Confidence 55544443
No 98
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.10 E-value=2.1e-08 Score=132.31 Aligned_cols=131 Identities=17% Similarity=0.238 Sum_probs=113.5
Q ss_pred ccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000139 1064 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1143 (2062)
Q Consensus 1064 dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrA 1143 (2062)
.-.|+.++..-+..+...|..|||||.....-+.|...|...|+++..|++.....+|..+.+.|+... ++++|..
T Consensus 431 ~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~----VtIATnm 506 (908)
T PRK13107 431 ADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA----VTIATNM 506 (908)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc----EEEecCC
Confidence 357999999999999999999999999999999999999999999999999999999999999998633 4788999
Q ss_pred cccccCcc-------------------------------------cCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEE
Q 000139 1144 GGVGINLV-------------------------------------GADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHI 1186 (2062)
Q Consensus 1144 GG~GLNLT-------------------------------------~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~V 1186 (2062)
+|.|+++. |.=+||.-..+=|--+|.|..|||+|.|..--...
T Consensus 507 AGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f 586 (908)
T PRK13107 507 AGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRF 586 (908)
T ss_pred cCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeE
Confidence 99999864 34489999999999999999999999998655444
Q ss_pred EEEEeCCCHHHHHHHHH
Q 000139 1187 YRLISESTIEENILKKA 1203 (2062)
Q Consensus 1187 YRLIse~TIEE~Ilkka 1203 (2062)
|- |.|+.++.+-
T Consensus 587 ~l-----SlED~L~r~f 598 (908)
T PRK13107 587 YL-----SMEDSLMRIF 598 (908)
T ss_pred EE-----EeCcHHHHHh
Confidence 32 4577777653
No 99
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.10 E-value=1.1e-09 Score=133.68 Aligned_cols=128 Identities=16% Similarity=0.271 Sum_probs=107.9
Q ss_pred hHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccccc
Q 000139 1067 KLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGV 1146 (2062)
Q Consensus 1067 KLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~ 1146 (2062)
++..|..+|++.... .|||||.....+.+++...|++..+.+.-|+|..++..|-....+|...... +|++|.+++.
T Consensus 316 ~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesg--IL~cTDVaAR 392 (543)
T KOG0342|consen 316 RFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESG--ILVCTDVAAR 392 (543)
T ss_pred hHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccc--eEEecchhhc
Confidence 466777788776554 8999999999999999999999999999999999999999999999874433 5889999999
Q ss_pred ccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHH
Q 000139 1147 GINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILK 1201 (2062)
Q Consensus 1147 GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilk 1201 (2062)
|++....|-||-||||-||...+.|+||..|-|-+ -+-+-|+++. |...+.
T Consensus 393 GlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~--G~alL~l~p~--El~Flr 443 (543)
T KOG0342|consen 393 GLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKE--GKALLLLAPW--ELGFLR 443 (543)
T ss_pred cCCCCCceEEEEeCCCCCHHHHHHHhccccccCCC--ceEEEEeChh--HHHHHH
Confidence 99999999999999999999999999999996654 3444556553 444443
No 100
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.09 E-value=9.9e-09 Score=132.11 Aligned_cols=128 Identities=19% Similarity=0.173 Sum_probs=85.7
Q ss_pred EEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCCCCeEEEEeCChhhHHhhhhccC--CCCC
Q 000139 548 LADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWL--KPNS 624 (2062)
Q Consensus 548 LADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw~P~lkVl~y~Gs~kerk~~r~gw~--k~~~ 624 (2062)
|.-.+|.|||.+.+.++.+.... | +.+|||+|. +++.|+...|++.++ .++.+++|....... ...|. ..+.
T Consensus 2 L~g~TGsGKT~v~l~~i~~~l~~-g--~~vLvlvP~i~L~~Q~~~~l~~~f~-~~v~vlhs~~~~~er-~~~~~~~~~g~ 76 (505)
T TIGR00595 2 LFGVTGSGKTEVYLQAIEKVLAL-G--KSVLVLVPEIALTPQMIQRFKYRFG-SQVAVLHSGLSDSEK-LQAWRKVKNGE 76 (505)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHc-C--CeEEEEeCcHHHHHHHHHHHHHHhC-CcEEEEECCCCHHHH-HHHHHHHHcCC
Confidence 44579999999998877766542 2 469999998 688999999998764 567788875432211 11222 2356
Q ss_pred ceEEEEehhhhhhchhhhhccCeeEEEEcCccccCC--hhh-----HHH-HHHHcccCceEEEEeccCC
Q 000139 625 FHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKN--WKS-----QRW-QTLLNFNSKRRILLTGTPL 685 (2062)
Q Consensus 625 fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN--~~S-----k~~-qaL~~L~a~~RLLLTGTPL 685 (2062)
.+|||+|...+.. .-.+.++|||||.|...- ... ... .....+.....+++||||.
T Consensus 77 ~~IVVGTrsalf~-----p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPs 140 (505)
T TIGR00595 77 ILVVIGTRSALFL-----PFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPS 140 (505)
T ss_pred CCEEECChHHHcC-----cccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 7899999987743 223579999999998642 111 111 1122334567899999997
No 101
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.08 E-value=7.9e-10 Score=120.89 Aligned_cols=157 Identities=18% Similarity=0.225 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCCC--CeEE
Q 000139 527 EYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCPA--FKIL 603 (2062)
Q Consensus 527 pYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw~P~--lkVl 603 (2062)
|+|.+++.-+.. +.+.|+...+|.|||...+..+....... ..+.+||+||. .++.|-..++.+++.. .++.
T Consensus 2 ~~Q~~~~~~i~~----~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~ 76 (169)
T PF00270_consen 2 PLQQEAIEAIIS----GKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVV 76 (169)
T ss_dssp HHHHHHHHHHHT----TSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEE
T ss_pred HHHHHHHHHHHc----CCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeecccccccccccccccccccccccc
Confidence 789999987763 67789999999999999886665544433 44589999998 5788888899988854 7888
Q ss_pred EEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhh--hhccCeeEEEEcCccccCCh--hhHHHHHHHcc---cCce
Q 000139 604 TYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKV--FKRKKWKYLILDEAHLIKNW--KSQRWQTLLNF---NSKR 676 (2062)
Q Consensus 604 ~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~--L~r~~W~lVILDEAH~IKN~--~Sk~~qaL~~L---~a~~ 676 (2062)
.++|.......... |. .+..+|+|+|+..+...... +.-...++||+||+|.+-.. .......+..+ ...+
T Consensus 77 ~~~~~~~~~~~~~~-~~-~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~ 154 (169)
T PF00270_consen 77 LLHGGQSISEDQRE-VL-SNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQ 154 (169)
T ss_dssp EESTTSCHHHHHHH-HH-HTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSE
T ss_pred cccccccccccccc-cc-cccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCc
Confidence 88776542211111 11 24678999999998776543 12234899999999999663 22233333333 3467
Q ss_pred EEEEeccCCCCChHH
Q 000139 677 RILLTGTPLQNDLME 691 (2062)
Q Consensus 677 RLLLTGTPLQNsL~E 691 (2062)
.+++||||- .++..
T Consensus 155 ~i~~SAT~~-~~~~~ 168 (169)
T PF00270_consen 155 IILLSATLP-SNVEK 168 (169)
T ss_dssp EEEEESSST-HHHHH
T ss_pred EEEEeeCCC-hhHhh
Confidence 999999997 55543
No 102
>COG4889 Predicted helicase [General function prediction only]
Probab=99.06 E-value=3e-09 Score=134.57 Aligned_cols=166 Identities=22% Similarity=0.242 Sum_probs=108.7
Q ss_pred ccCCCCCCCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHH
Q 000139 515 TKFPFLLKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEF 593 (2062)
Q Consensus 515 t~vP~lLk~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Ef 593 (2062)
..+|.-=...|||||..+++-....+..+-.|=|-..+|.|||++++-+...++. ..+|++||+ +|+.|-.+|.
T Consensus 152 ~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~-----~~iL~LvPSIsLLsQTlrew 226 (1518)
T COG4889 152 DNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA-----ARILFLVPSISLLSQTLREW 226 (1518)
T ss_pred cccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhh-----hheEeecchHHHHHHHHHHH
Confidence 3445444578999999999999999988888888888999999999998888776 478999998 6777744443
Q ss_pred HHHC-CCCeEEEEeCChhh--------------------HH--hhhhccCCCCCceEEEEehhhhhhchhh--hhccCee
Q 000139 594 LKWC-PAFKILTYFGSAKE--------------------RK--FKRQGWLKPNSFHVCITTYRLIIQDSKV--FKRKKWK 648 (2062)
Q Consensus 594 kkw~-P~lkVl~y~Gs~ke--------------------rk--~~r~gw~k~~~fdVVITSYe~l~~d~~~--L~r~~W~ 648 (2062)
..-. -.++........+. +. ..+....+.++.-||.+||+.+..-... ..--.|+
T Consensus 227 ~~~~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fD 306 (1518)
T COG4889 227 TAQKELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFD 306 (1518)
T ss_pred hhccCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCcc
Confidence 2110 11222222111111 00 0111122456778999999998765433 3345799
Q ss_pred EEEEcCccccCCh------hhHHHHH--HHcccCceEEEEeccCC
Q 000139 649 YLILDEAHLIKNW------KSQRWQT--LLNFNSKRRILLTGTPL 685 (2062)
Q Consensus 649 lVILDEAH~IKN~------~Sk~~qa--L~~L~a~~RLLLTGTPL 685 (2062)
+|||||||+--.. .|..++. -..+++.+||-|||||-
T Consensus 307 liicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPk 351 (1518)
T COG4889 307 LIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPK 351 (1518)
T ss_pred EEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCch
Confidence 9999999985331 1211111 23456778999999993
No 103
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.06 E-value=9.5e-09 Score=121.25 Aligned_cols=116 Identities=19% Similarity=0.262 Sum_probs=104.6
Q ss_pred chHHHHHHHHHHhhh-CCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccc
Q 000139 1066 GKLQELAILLRKLKS-DGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSG 1144 (2062)
Q Consensus 1066 GKLq~L~~LLrkLks-~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAG 1144 (2062)
+|-.+|..+|+.... +...++||+|-++...+|...|...+++...+++-+++.+|-..+.+|.. ..+++ |+.|+++
T Consensus 237 vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs-~~~~i-liaTDVA 314 (442)
T KOG0340|consen 237 VKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRS-NAARI-LIATDVA 314 (442)
T ss_pred hhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhh-cCccE-EEEechh
Confidence 566677888888876 56789999999999999999999999999999999999999999999987 45666 6789999
Q ss_pred ccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCc
Q 000139 1145 GVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTRE 1183 (2062)
Q Consensus 1145 G~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRd 1183 (2062)
+.||++...+-||.||.|-.|-....+.||.-|-|..-.
T Consensus 315 sRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~ 353 (442)
T KOG0340|consen 315 SRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGM 353 (442)
T ss_pred hcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcc
Confidence 999999999999999999999999999999888887654
No 104
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.01 E-value=1.1e-07 Score=126.05 Aligned_cols=132 Identities=17% Similarity=0.239 Sum_probs=111.1
Q ss_pred ccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000139 1064 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1143 (2062)
Q Consensus 1064 dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrA 1143 (2062)
...|+.+|..++.++...|..|||||......+.|...|..+|+++..|+|. ..+|.+.|..|.. ....| +++|..
T Consensus 412 ~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag-~~g~V-tIATNm 487 (830)
T PRK12904 412 EKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAG-RPGAV-TIATNM 487 (830)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcC-CCceE-EEeccc
Confidence 3469999999999988899999999999999999999999999999999995 6799999999975 33444 788999
Q ss_pred cccccCcc--------------------------------------cCCEEEEecCCCChhhHHHHHHhhhccCCcCcEE
Q 000139 1144 GGVGINLV--------------------------------------GADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVH 1185 (2062)
Q Consensus 1144 GG~GLNLT--------------------------------------~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~ 1185 (2062)
+|.|+++. |.=+||.-..+=|--+|.|..||++|.|..-...
T Consensus 488 AGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~ 567 (830)
T PRK12904 488 AGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSR 567 (830)
T ss_pred ccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCcee
Confidence 99998863 3458999999999999999999999999877666
Q ss_pred EEEEEeCCCHHHHHHHHHH
Q 000139 1186 IYRLISESTIEENILKKAN 1204 (2062)
Q Consensus 1186 VYRLIse~TIEE~Ilkka~ 1204 (2062)
.|- |.|+.++.+-.
T Consensus 568 f~l-----SleD~l~~~f~ 581 (830)
T PRK12904 568 FYL-----SLEDDLMRIFG 581 (830)
T ss_pred EEE-----EcCcHHHHhhc
Confidence 543 45667765533
No 105
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.01 E-value=2.8e-07 Score=122.35 Aligned_cols=132 Identities=14% Similarity=0.227 Sum_probs=110.0
Q ss_pred ccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000139 1064 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1143 (2062)
Q Consensus 1064 dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrA 1143 (2062)
...|+.+|..++..+...|..|||||+.....+.|...|...|+++..|++ +..+|++.|-.|.. .... ++++|..
T Consensus 580 ~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG-~~g~-VtIATNM 655 (1025)
T PRK12900 580 RREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAG-QKGA-VTIATNM 655 (1025)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcC-CCCe-EEEeccC
Confidence 346999999999999899999999999999999999999999999999997 56799999999975 3333 4789999
Q ss_pred cccccCcccCC--------EEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHH
Q 000139 1144 GGVGINLVGAD--------TVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAN 1204 (2062)
Q Consensus 1144 GG~GLNLT~AD--------tVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~ 1204 (2062)
+|.|+++.-.. +||.++.+-+.-++.|++||++|.|..-.... |+ |.|+.++.+-.
T Consensus 656 AGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~f--fv---SleD~Lmr~f~ 719 (1025)
T PRK12900 656 AGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVF--YV---SLEDELMRLFG 719 (1025)
T ss_pred cCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEE--Ee---chhHHHHHhhC
Confidence 99999987332 45889999999999999999999997655433 33 45777776543
No 106
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=98.98 E-value=1.7e-09 Score=132.63 Aligned_cols=106 Identities=18% Similarity=0.325 Sum_probs=91.6
Q ss_pred eEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEEEecCCC
Q 000139 1084 RALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDW 1163 (2062)
Q Consensus 1084 KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIfyD~dW 1163 (2062)
|.|||++...-..-|.-+|+..++.-+.|+.+|.+.+|-+.+++|...+. ++|+.|.+++.||++++..|||+|.-|-
T Consensus 465 rTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~--~VLiaTDVAARGLDIp~V~HVIHYqVPr 542 (731)
T KOG0347|consen 465 RTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPS--GVLIATDVAARGLDIPGVQHVIHYQVPR 542 (731)
T ss_pred ceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCC--eEEEeehhhhccCCCCCcceEEEeecCC
Confidence 88999999999999999999999999999999999999999999987544 5688999999999999999999999999
Q ss_pred ChhhHHHHHHhhhccCCcCcEEEEEEEeCC
Q 000139 1164 NPAMDQQAQDRCHRIGQTREVHIYRLISES 1193 (2062)
Q Consensus 1164 NPa~d~QA~gRahRIGQTRdV~VYRLIse~ 1193 (2062)
.--+...|-||.-|-+. +-|.|. |+...
T Consensus 543 tseiYVHRSGRTARA~~-~Gvsvm-l~~P~ 570 (731)
T KOG0347|consen 543 TSEIYVHRSGRTARANS-EGVSVM-LCGPQ 570 (731)
T ss_pred ccceeEecccccccccC-CCeEEE-EeChH
Confidence 98888777777777653 345542 44443
No 107
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=98.96 E-value=1.9e-08 Score=135.43 Aligned_cols=112 Identities=15% Similarity=0.175 Sum_probs=88.5
Q ss_pred CCeEEEEeCchHHHHHHHHHHHH---cCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEEE
Q 000139 1082 GHRALIFTQMTKMLDILEEFISL---YGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIF 1158 (2062)
Q Consensus 1082 GhKVLIFSQ~t~mLDILe~~L~~---~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIf 1158 (2062)
+..||||..-...++.+...|.. .++.++.|+|+++.++|+.++..|.. +..+| |++|..+..||++.+.++||.
T Consensus 212 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~-G~rkV-lvATnIAErsLtIp~V~~VID 289 (812)
T PRK11664 212 SGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPA-GRRKV-VLATNIAETSLTIEGIRLVVD 289 (812)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccC-CCeEE-EEecchHHhcccccCceEEEE
Confidence 56899999999999999999986 68889999999999999999999964 44554 799999999999999999999
Q ss_pred ecCC----CChhh-----------HHHHHHhhhccCCcCcEEEEEEEeCCCH
Q 000139 1159 YDSD----WNPAM-----------DQQAQDRCHRIGQTREVHIYRLISESTI 1195 (2062)
Q Consensus 1159 yD~d----WNPa~-----------d~QA~gRahRIGQTRdV~VYRLIse~TI 1195 (2062)
++.. |+|.. -.+++-|++|.|.+++-..|||+++...
T Consensus 290 ~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~~G~cyrL~t~~~~ 341 (812)
T PRK11664 290 SGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLEPGICLHLYSKEQA 341 (812)
T ss_pred CCCcccccccccCCcceeEEEeechhhhhhhccccCCCCCcEEEEecCHHHH
Confidence 6643 44331 1234444444444569999999998754
No 108
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=98.95 E-value=8.2e-08 Score=128.46 Aligned_cols=158 Identities=23% Similarity=0.353 Sum_probs=110.0
Q ss_pred CCCcHHHHHHHHHHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHH-HHHHHHHCCC
Q 000139 523 FPLREYQHIGLDWLVTMYEKR--LNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNW-ETEFLKWCPA 599 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~--~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW-~~Efkkw~P~ 599 (2062)
+.--|-|..+++-...=..++ +-=+||-++|.|||=+|+-.+-.... .| +-+.|+||+.++.+. -.-|+.-+-+
T Consensus 593 yeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~-~G--KQVAvLVPTTlLA~QHy~tFkeRF~~ 669 (1139)
T COG1197 593 YEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM-DG--KQVAVLVPTTLLAQQHYETFKERFAG 669 (1139)
T ss_pred CcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc-CC--CeEEEEcccHHhHHHHHHHHHHHhcC
Confidence 556789999999877655443 34589999999999988743322222 22 568999999987663 4445433333
Q ss_pred C----eEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHcccCc
Q 000139 600 F----KILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSK 675 (2062)
Q Consensus 600 l----kVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L~a~ 675 (2062)
+ .++.-+-+.++.+....+ .+.+..||||-|+.++.++..+ .+-.+|||||=|++. =+.-..++.+++.
T Consensus 670 fPV~I~~LSRF~s~kE~~~il~~-la~G~vDIvIGTHrLL~kdv~F---kdLGLlIIDEEqRFG---Vk~KEkLK~Lr~~ 742 (1139)
T COG1197 670 FPVRIEVLSRFRSAKEQKEILKG-LAEGKVDIVIGTHRLLSKDVKF---KDLGLLIIDEEQRFG---VKHKEKLKELRAN 742 (1139)
T ss_pred CCeeEEEecccCCHHHHHHHHHH-HhcCCccEEEechHhhCCCcEE---ecCCeEEEechhhcC---ccHHHHHHHHhcc
Confidence 3 333344556665555443 4568999999999999888544 346899999999985 3445567777655
Q ss_pred -eEEEEeccCCCCChH
Q 000139 676 -RRILLTGTPLQNDLM 690 (2062)
Q Consensus 676 -~RLLLTGTPLQNsL~ 690 (2062)
..|-||||||..+|.
T Consensus 743 VDvLTLSATPIPRTL~ 758 (1139)
T COG1197 743 VDVLTLSATPIPRTLN 758 (1139)
T ss_pred CcEEEeeCCCCcchHH
Confidence 789999999987643
No 109
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.88 E-value=2.2e-08 Score=125.01 Aligned_cols=145 Identities=23% Similarity=0.267 Sum_probs=112.1
Q ss_pred cchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHH-HHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000139 1065 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFI-SLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1143 (2062)
Q Consensus 1065 SGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L-~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrA 1143 (2062)
-||+-++..++..... -.+|||.|...-..-|-..| .+.++..-.|+|..+..+|...|++|.. +.|.| |++|..
T Consensus 372 ~~K~lA~rq~v~~g~~--PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~-g~Iwv-LicTdl 447 (593)
T KOG0344|consen 372 KGKLLALRQLVASGFK--PPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRI-GKIWV-LICTDL 447 (593)
T ss_pred hhHHHHHHHHHhccCC--CCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhc-cCeeE-EEehhh
Confidence 3566666666665432 37999999999988898889 8999999999999999999999999986 78988 567899
Q ss_pred cccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Q 000139 1144 GGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNTEF 1223 (2062)
Q Consensus 1144 GG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~qKr~L~~~vIq~g~ft~~~ 1223 (2062)
.+.||++.+++.||.||.+=.-...+.++||.+|-|+. -+.|-|.+..-. ..=+.+.+...+.|.-.+++
T Consensus 448 l~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~--g~Aitfytd~d~--------~~ir~iae~~~~sG~evpe~ 517 (593)
T KOG0344|consen 448 LARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRS--GKAITFYTDQDM--------PRIRSIAEVMEQSGCEVPEK 517 (593)
T ss_pred hhccccccCcceEEecCCCchhHHHHHHhhccCCCCCC--cceEEEeccccc--------hhhhhHHHHHHHcCCcchHH
Confidence 99999999999999999877777777778888888764 455556665111 12245566666666555554
No 110
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.80 E-value=4.1e-06 Score=111.41 Aligned_cols=131 Identities=16% Similarity=0.279 Sum_probs=104.0
Q ss_pred ccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000139 1064 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1143 (2062)
Q Consensus 1064 dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrA 1143 (2062)
...|+.++..-+..+...|.-|||-|..+..-..|...|...|+.+..|+.... ++-..++.+ .++.-.+.++|..
T Consensus 550 ~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~-~~Ea~iia~---AG~~g~VTIATNm 625 (970)
T PRK12899 550 EREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNH-AQEAEIIAG---AGKLGAVTVATNM 625 (970)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchh-hhHHHHHHh---cCCCCcEEEeecc
Confidence 358999999999999999999999999999999999999999999999987643 333344443 2344445789999
Q ss_pred cccccCcc--------cCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHH
Q 000139 1144 GGVGINLV--------GADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKA 1203 (2062)
Q Consensus 1144 GG~GLNLT--------~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka 1203 (2062)
+|.|.++. |.=+||.-..+-|..+|.|..||++|.|..-....|- |.|+.++.+-
T Consensus 626 AGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~l-----SlEDdL~~~f 688 (970)
T PRK12899 626 AGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFL-----SFEDRLMRLF 688 (970)
T ss_pred ccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEE-----EcchHHHHHh
Confidence 99997763 3458999999999999999999999999866554432 4577777653
No 111
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=98.79 E-value=9.1e-08 Score=115.23 Aligned_cols=141 Identities=21% Similarity=0.280 Sum_probs=89.8
Q ss_pred cccchHHHHHHHHHHh-----hhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHH------------
Q 000139 1063 FDCGKLQELAILLRKL-----KSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLM------------ 1125 (2062)
Q Consensus 1063 ~dSGKLq~L~~LLrkL-----ks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lm------------ 1125 (2062)
+.|||++.|..||..+ ...+.+|||.++-.+++|+||.+|...++.|-|++|..-.++....-
T Consensus 93 ~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~ 172 (297)
T PF11496_consen 93 YTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNGNTESNSSNN 172 (297)
T ss_dssp HT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S-------------
T ss_pred HcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCcccccccccccc
Confidence 4589999999999999 67788999999999999999999999999999999976544333222
Q ss_pred HHHh--cCCCceEEEEecccccc----ccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHH
Q 000139 1126 QRFN--TNPKIFLFILSTRSGGV----GINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENI 1199 (2062)
Q Consensus 1126 erFN--~D~~IfVfLLSTrAGG~----GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~I 1199 (2062)
...+ ....+.|+|++|.-... .++-...|-||-||+.+++....-..=|.+.-.+ +.+-|+|||..+|||--+
T Consensus 173 ~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~-~~~PiirLv~~nSiEHi~ 251 (297)
T PF11496_consen 173 SKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN-RLCPIIRLVPSNSIEHIE 251 (297)
T ss_dssp ---------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH--------S--EEEEEETTSHHHHH
T ss_pred cccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC-CCCcEEEEeeCCCHHHHH
Confidence 1111 12457777777654433 2334567899999999999887655555554333 899999999999999988
Q ss_pred HHHHH
Q 000139 1200 LKKAN 1204 (2062)
Q Consensus 1200 lkka~ 1204 (2062)
+....
T Consensus 252 L~~~~ 256 (297)
T PF11496_consen 252 LCFPK 256 (297)
T ss_dssp HHHTT
T ss_pred HHccC
Confidence 76643
No 112
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=98.79 E-value=1.4e-07 Score=116.65 Aligned_cols=107 Identities=18% Similarity=0.231 Sum_probs=93.2
Q ss_pred eEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEEE----e
Q 000139 1084 RALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIF----Y 1159 (2062)
Q Consensus 1084 KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIf----y 1159 (2062)
.+||||...+-...|..+|+..|++..-++++.+..+|+.+=..|.+ ..+-| +++|.+.|.|+++. |+.||| +
T Consensus 442 QtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~-q~l~~-VVTTAAL~AGVDFP-ASQVIFEsLaM 518 (830)
T COG1202 442 QTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAA-QELAA-VVTTAALAAGVDFP-ASQVIFESLAM 518 (830)
T ss_pred ceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhc-CCcce-EeehhhhhcCCCCc-hHHHHHHHHHc
Confidence 68999999999999999999999999999999999999999999975 56666 68999999999987 566776 3
Q ss_pred cC-CCChhhHHHHHHhhhccCCcCcEEEEEEEeCC
Q 000139 1160 DS-DWNPAMDQQAQDRCHRIGQTREVHIYRLISES 1193 (2062)
Q Consensus 1160 D~-dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~ 1193 (2062)
-. |.+|.-.+|-.||++|-|=.-.-.||-|+-.+
T Consensus 519 G~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 519 GIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred ccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 33 55999999999999999987777888888654
No 113
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.73 E-value=3.4e-07 Score=126.33 Aligned_cols=108 Identities=20% Similarity=0.242 Sum_probs=86.7
Q ss_pred CCeEEEEeCchHHHHHHHHHHHHcCC---cEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEEE
Q 000139 1082 GHRALIFTQMTKMLDILEEFISLYGY---TYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIF 1158 (2062)
Q Consensus 1082 GhKVLIFSQ~t~mLDILe~~L~~~Gi---~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIf 1158 (2062)
...||||..-...++.+...|..+++ .++-|+|+++.++|+.++..+ +..+ +|+||..+..||++.+..+||-
T Consensus 279 ~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~---~~rk-IVLATNIAEtSLTIpgV~yVID 354 (1283)
T TIGR01967 279 PGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH---SGRR-IVLATNVAETSLTVPGIHYVID 354 (1283)
T ss_pred CCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC---CCce-EEEeccHHHhccccCCeeEEEe
Confidence 45899999999999999999987654 478899999999999885544 2334 4899999999999999999998
Q ss_pred ecC----CCC--------------hhhHHHHHHhhhccCCcCcEEEEEEEeCCCHH
Q 000139 1159 YDS----DWN--------------PAMDQQAQDRCHRIGQTREVHIYRLISESTIE 1196 (2062)
Q Consensus 1159 yD~----dWN--------------Pa~d~QA~gRahRIGQTRdV~VYRLIse~TIE 1196 (2062)
++. -|| .+.-.||.|||+|.| +-.+|||+++...+
T Consensus 355 sGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 355 TGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDFN 407 (1283)
T ss_pred CCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHHH
Confidence 773 122 246678888888887 77889999976543
No 114
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=98.72 E-value=5.3e-08 Score=119.44 Aligned_cols=143 Identities=21% Similarity=0.277 Sum_probs=116.0
Q ss_pred ccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000139 1064 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1143 (2062)
Q Consensus 1064 dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrA 1143 (2062)
.+.|...|..+|... ....+|||.+..+..|.|...|...||.+++|+|+-+.+||..++..|... ...| |+.|.+
T Consensus 501 ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~-t~dI-lVaTDv 576 (673)
T KOG0333|consen 501 EDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREG-TGDI-LVATDV 576 (673)
T ss_pred chHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhc-CCCE-EEEecc
Confidence 467899999999876 456999999999999999999999999999999999999999999999872 2333 567999
Q ss_pred cccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhc
Q 000139 1144 GGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQS 1216 (2062)
Q Consensus 1144 GG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~qKr~L~~~vIq~ 1216 (2062)
+|.||++...++||.||..-+-.+...+|||.+|-|+.-.+. -|+++.-- +-.|. -|+.|...+..+
T Consensus 577 AgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~Gtai--Sflt~~dt-~v~yd---Lkq~l~es~~s~ 643 (673)
T KOG0333|consen 577 AGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAI--SFLTPADT-AVFYD---LKQALRESVKSH 643 (673)
T ss_pred cccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeE--EEeccchh-HHHHH---HHHHHHHhhhcc
Confidence 999999999999999999999999999999999999865543 34544321 12222 356666555543
No 115
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=98.71 E-value=4e-07 Score=120.08 Aligned_cols=123 Identities=19% Similarity=0.245 Sum_probs=102.5
Q ss_pred cchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccc
Q 000139 1065 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSG 1144 (2062)
Q Consensus 1065 SGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAG 1144 (2062)
..|+..|..||..... .-++|||++-..-+|.|-.-|...||.+..|+|..+..+|...++.|.++ ...+|+.|...
T Consensus 597 ~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~--~~~LLvaTsvv 673 (997)
T KOG0334|consen 597 NEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNG--VVNLLVATSVV 673 (997)
T ss_pred hHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhcc--CceEEEehhhh
Confidence 4588888888887766 56999999999999999999999999999999999999999999999873 33467888999
Q ss_pred ccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeC
Q 000139 1145 GVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISE 1192 (2062)
Q Consensus 1145 G~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse 1192 (2062)
..||+...-..||+||.+=--.....|.||..|-|.+- .-|-||..
T Consensus 674 arGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 674 ARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred hcccccccceEEEEcccchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 99999999999999998655555666666666666554 66777777
No 116
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=98.70 E-value=5.3e-07 Score=124.07 Aligned_cols=107 Identities=21% Similarity=0.235 Sum_probs=84.1
Q ss_pred CCeEEEEeCchHHHHHHHHHHHHcCCc---EEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEEE
Q 000139 1082 GHRALIFTQMTKMLDILEEFISLYGYT---YMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIF 1158 (2062)
Q Consensus 1082 GhKVLIFSQ~t~mLDILe~~L~~~Gi~---y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIf 1158 (2062)
..+||||..-...++.+...|...++. ++-|+|+++.++|+.+++.+ +..+ +|++|..+..||++.+.++||.
T Consensus 286 ~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~---g~rk-IIVATNIAEtSITIpgI~yVID 361 (1294)
T PRK11131 286 PGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH---SGRR-IVLATNVAETSLTVPGIKYVID 361 (1294)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc---CCee-EEEeccHHhhccccCcceEEEE
Confidence 458999999999999999999988875 56789999999999887653 3444 4799999999999999999998
Q ss_pred ec---------------CCCCh---hhHHHHHHhhhccCCcCcEEEEEEEeCCCH
Q 000139 1159 YD---------------SDWNP---AMDQQAQDRCHRIGQTREVHIYRLISESTI 1195 (2062)
Q Consensus 1159 yD---------------~dWNP---a~d~QA~gRahRIGQTRdV~VYRLIse~TI 1195 (2062)
++ .+-.| +.-.||.|||+|. ++-..|||+++...
T Consensus 362 ~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~---~~G~c~rLyte~d~ 413 (1294)
T PRK11131 362 PGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV---SEGICIRLYSEDDF 413 (1294)
T ss_pred CCCccccccccccCcccCCeeecCHhhHhhhccccCCC---CCcEEEEeCCHHHH
Confidence 75 22233 3455666666665 68889999986543
No 117
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=98.69 E-value=7.7e-10 Score=142.44 Aligned_cols=137 Identities=14% Similarity=-0.042 Sum_probs=115.5
Q ss_pred HhhhcCCcCCCCCCCCCCchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHH
Q 000139 16 ARRQKALEAPREPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKKVALRASKGMLDQASRGEKKLKEEEQRLRKVAVN 95 (2062)
Q Consensus 16 ~~~~~~l~~~~ep~r~k~hwd~lleEm~wma~df~~Er~wk~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ia~~ 95 (2062)
.+.+-+|.++.||++.|+||+|.|.+-.|++.+|.-+-.=+...|+-+++.....|.+....-+.+....-.-.++....
T Consensus 241 r~s~qrl~k~~ep~~~k~~~~~~ll~~~~~~~pp~~~t~~~d~ia~f~aqqd~~~h~d~qIeie~~~e~~~~e~~k~~i~ 320 (1958)
T KOG0391|consen 241 RQSQQRLDKSTEPPVQKAASLHTLLPQLPGRLPPAGVTTAADSIALFFAQQDQVVHADTQIEIEVKTEQPNVEIPKPPIS 320 (1958)
T ss_pred HHHHhhcCCCCCchhccccccccccccccccCCCCCCCccccchhhhhhcchhhhhhhhhhhhhhhhccccccccccchh
Confidence 45566899999999999999999999999999999999999999999999999988887655544444444456778889
Q ss_pred HHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHhhhhhHHhchhhhhHHHHHhhhcCC
Q 000139 96 ISKDVKKFWMKIEKLVLYKHQMEVDVRKKKALDKQLEFLLGQTERYSSMLAENLVDS 152 (2062)
Q Consensus 96 iak~v~~FW~~iek~v~~K~Q~~leekrKkALd~~L~fivgqTEkys~~l~~~l~~~ 152 (2062)
++|.|..||.+..+.|..-+-.+....-.++-..|+.|.+++.++.+++-..++..+
T Consensus 321 ~lk~v~~~p~q~~lhv~~pa~e~gps~~r~~p~sh~sfa~~~v~e~~n~~~pgvv~s 377 (1958)
T KOG0391|consen 321 QLKIVPSQPAQLALHVPTPASEPGPSPARSSPVSHPSFATNKVLEPVNSRTPGVVAS 377 (1958)
T ss_pred hccccccchHHHhhcCCCccccCCCCchhcCccccchhhhhcccccccccCcceeec
Confidence 999999999999999988777777777788889999999999998887777776543
No 118
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.67 E-value=3.1e-06 Score=110.16 Aligned_cols=132 Identities=17% Similarity=0.227 Sum_probs=106.2
Q ss_pred ccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000139 1064 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1143 (2062)
Q Consensus 1064 dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrA 1143 (2062)
...|+.++..-+.++.+.|.-|||.|..+..-..|...|...|+++..|..... ++-..++.+ .++...+.++|.-
T Consensus 409 ~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~-~~EA~IIa~---AG~~gaVTIATNM 484 (764)
T PRK12326 409 AAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND-AEEARIIAE---AGKYGAVTVSTQM 484 (764)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch-HhHHHHHHh---cCCCCcEEEEecC
Confidence 457999999999999999999999999999999999999999999999987644 333445544 2444456789999
Q ss_pred cccccCcc---------------cCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHH
Q 000139 1144 GGVGINLV---------------GADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAN 1204 (2062)
Q Consensus 1144 GG~GLNLT---------------~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~ 1204 (2062)
+|.|.++. |.=+||.-..+=|--+|.|..|||+|.|..-....|- |.|+.++.+-.
T Consensus 485 AGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~l-----SleDdl~~~f~ 555 (764)
T PRK12326 485 AGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFV-----SLEDDVVAANL 555 (764)
T ss_pred CCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEE-----EcchhHHHhcC
Confidence 99997764 3458999988899999999999999999876655543 56777776543
No 119
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.63 E-value=3.7e-06 Score=110.34 Aligned_cols=158 Identities=18% Similarity=0.201 Sum_probs=102.3
Q ss_pred HhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcC-------CCCcEEEEecCCcH-----HHHHHHHHHHCCCCeEEEEe
Q 000139 539 MYEKRLNGILADEMGLGKTIMTIAMLAHLACEKG-------IWGPHLIVVPTSVM-----LNWETEFLKWCPAFKILTYF 606 (2062)
Q Consensus 539 l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g-------~~Gp~LIVvPtSLL-----~QW~~Efkkw~P~lkVl~y~ 606 (2062)
.|+.+.|.|++..+|.|||..+...|.++...+. ..-+++-|+|.-.+ .+|-.-|.-| +++|.-+.
T Consensus 122 aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~--gi~v~ELT 199 (1230)
T KOG0952|consen 122 AYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPL--GISVRELT 199 (1230)
T ss_pred hhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccc--cceEEEec
Confidence 5778999999999999999998877777665421 12367889997433 3344444433 68899999
Q ss_pred CChhhHHhhhhccCCCCCceEEEEehhhhhh-------chhhhhccCeeEEEEcCccccCChh-----hHHHHHHHcc--
Q 000139 607 GSAKERKFKRQGWLKPNSFHVCITTYRLIIQ-------DSKVFKRKKWKYLILDEAHLIKNWK-----SQRWQTLLNF-- 672 (2062)
Q Consensus 607 Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~-------d~~~L~r~~W~lVILDEAH~IKN~~-----Sk~~qaL~~L-- 672 (2062)
|.....+... ...+|+|||.+.+-- +...+. ...+|||||.|.|.... +-.++.++..
T Consensus 200 GD~ql~~tei------~~tqiiVTTPEKwDvvTRk~~~d~~l~~--~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~ves 271 (1230)
T KOG0952|consen 200 GDTQLTKTEI------ADTQIIVTTPEKWDVVTRKSVGDSALFS--LVRLVIIDEVHLLHDDRGPVLETIVARTLRLVES 271 (1230)
T ss_pred CcchhhHHHH------HhcCEEEecccceeeeeeeeccchhhhh--heeeEEeeeehhhcCcccchHHHHHHHHHHHHHh
Confidence 9876544322 356799999876521 122222 36899999999998753 4445555333
Q ss_pred --cCceEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHH
Q 000139 673 --NSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFK 711 (2062)
Q Consensus 673 --~a~~RLLLTGTPLQNsL~ELwSLL~FL~P~iF~s~~eFk 711 (2062)
..-+.++||||-- |+.| +-+||..++......|.
T Consensus 272 sqs~IRivgLSATlP--N~eD---vA~fL~vn~~~glfsFd 307 (1230)
T KOG0952|consen 272 SQSMIRIVGLSATLP--NYED---VARFLRVNPYAGLFSFD 307 (1230)
T ss_pred hhhheEEEEeeccCC--CHHH---HHHHhcCCCccceeeec
Confidence 4457899999932 3344 45677655443333333
No 120
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.63 E-value=6.4e-07 Score=106.69 Aligned_cols=258 Identities=18% Similarity=0.188 Sum_probs=154.8
Q ss_pred HHHHHHHhhcCCCCCCccccccccccCCC--CCCCCCcHHHHHHHHHHHHHhhc------CCcEEEEcCCCChHHHHHHH
Q 000139 491 IADAAAAARSAQPTGITFSTTQVRTKFPF--LLKFPLREYQHIGLDWLVTMYEK------RLNGILADEMGLGKTIMTIA 562 (2062)
Q Consensus 491 i~~~aa~a~s~qP~g~~~~tt~vkt~vP~--lLk~~LRpYQ~~GL~WLv~l~~~------~~gGILADEMGLGKTIQaIA 562 (2062)
+.+.++.+ +..|+..+.. ..+|. .-.+.|-.-|+++|-+..+.+.. +.|-+|+|.+|.||..|+.+
T Consensus 8 vvEs~~la-sv~~P~~~y~-----~~lp~~~~~~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAg 81 (303)
T PF13872_consen 8 VVESASLA-SVAPPDPTYR-----LHLPEEVIDSGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAG 81 (303)
T ss_pred Hhhhhhhh-cCCCCCCCcc-----cCCCHHHHhcccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHH
Confidence 34444443 4555544332 34565 23688999999999998877763 56779999999999999999
Q ss_pred HHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCC-CCeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchh-
Q 000139 563 MLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCP-AFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK- 640 (2062)
Q Consensus 563 LLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw~P-~lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~- 640 (2062)
+|..... .|..+++.|-+...|...=.+.+..-.- .+.+.....-+. +-...-...|+.+||.++.....
T Consensus 82 iI~~n~l-~Gr~r~vwvS~s~dL~~Da~RDl~DIG~~~i~v~~l~~~~~-------~~~~~~~~GvlF~TYs~L~~~~~~ 153 (303)
T PF13872_consen 82 IILENWL-RGRKRAVWVSVSNDLKYDAERDLRDIGADNIPVHPLNKFKY-------GDIIRLKEGVLFSTYSTLISESQS 153 (303)
T ss_pred HHHHHHH-cCCCceEEEECChhhhhHHHHHHHHhCCCcccceechhhcc-------CcCCCCCCCccchhHHHHHhHHhc
Confidence 9988765 4555555555666777776666664321 122222211110 00111245699999999987632
Q ss_pred ------hhhc-cCe------eEEEEcCccccCChhh------HHHHHHHcc----cCceEEEEeccCCCCChHHHHHHHH
Q 000139 641 ------VFKR-KKW------KYLILDEAHLIKNWKS------QRWQTLLNF----NSKRRILLTGTPLQNDLMELWSLMH 697 (2062)
Q Consensus 641 ------~L~r-~~W------~lVILDEAH~IKN~~S------k~~qaL~~L----~a~~RLLLTGTPLQNsL~ELwSLL~ 697 (2062)
.|.. ..| .+|||||||+.||..+ +...++..| ..-+.+-.|||...+ +..|- +|.
T Consensus 154 ~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgase-p~Nma-Ym~ 231 (303)
T PF13872_consen 154 GGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASE-PRNMA-YMS 231 (303)
T ss_pred cCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCC-Cceee-eee
Confidence 1111 123 5899999999999754 566666554 445789999998743 22221 122
Q ss_pred Hh---CC-CCCCChHHHHHHhcCCCCCcccccccccHHHHHHHHHhhhhhhhhhhhhhHhhcCCCceeEEEEecCCHHHH
Q 000139 698 FL---MP-HIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRRLKRDVEKQLPMKQEHVIYCRLSKRQR 773 (2062)
Q Consensus 698 FL---~P-~iF~s~~eFkewFsnPisg~~eg~~~~n~~~i~rLhkvLrpFmLRRtK~DVekqLP~K~EhVV~c~LSkrQR 773 (2062)
=| .+ ..|.+..+|.+.+.+ ....-.+++.. .-..+..+++|... +-.-...++.++|++.|.
T Consensus 232 RLGLWG~gtpf~~~~~f~~a~~~--------gGv~amE~vA~-dlKa~G~yiaR~LS-----f~gvef~~~e~~l~~~~~ 297 (303)
T PF13872_consen 232 RLGLWGPGTPFPDFDDFLEAMEK--------GGVGAMEMVAM-DLKARGMYIARQLS-----FEGVEFEIEEVPLTPEQI 297 (303)
T ss_pred eccccCCCCCCCCHHHHHHHHHh--------cCchHHHHHHH-HHHhcchheeeecc-----cCCceEEEEEecCCHHHH
Confidence 12 11 246777777765532 11111222211 11234455666432 334467889999999999
Q ss_pred HHHHH
Q 000139 774 NLYED 778 (2062)
Q Consensus 774 ~LYdd 778 (2062)
.+|+.
T Consensus 298 ~~Yd~ 302 (303)
T PF13872_consen 298 KMYDA 302 (303)
T ss_pred HHhcC
Confidence 99985
No 121
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.62 E-value=2.1e-06 Score=115.52 Aligned_cols=123 Identities=15% Similarity=0.203 Sum_probs=97.1
Q ss_pred hCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhc---CCCceEEEEeccccccccCcccCCEE
Q 000139 1080 SDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNT---NPKIFLFILSTRSGGVGINLVGADTV 1156 (2062)
Q Consensus 1080 s~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~---D~~IfVfLLSTrAGG~GLNLT~ADtV 1156 (2062)
.+|.||+|-++-+...--+...|+..+..++.|++......|.+.++.... .... .++++|.+--+|+++. .|.+
T Consensus 438 ~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~-~IvVaTQVIEagvDid-fd~m 515 (733)
T COG1203 438 KEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEG-FIVVATQVIEAGVDID-FDVL 515 (733)
T ss_pred ccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCC-eEEEEeeEEEEEeccc-cCee
Confidence 457899999999999999999999888889999999999999998886553 2333 3478999999999998 6665
Q ss_pred EEecCCCCh-hhHHHHHHhhhccC--CcCcEEEEEEEeCCCHHHHHHHHHHHHH
Q 000139 1157 IFYDSDWNP-AMDQQAQDRCHRIG--QTREVHIYRLISESTIEENILKKANQKR 1207 (2062)
Q Consensus 1157 IfyD~dWNP-a~d~QA~gRahRIG--QTRdV~VYRLIse~TIEE~Ilkka~qKr 1207 (2062)
|- |+ .| ....||.|||+|-| ..-.+.||...-......+.+.....+.
T Consensus 516 IT-e~--aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 566 (733)
T COG1203 516 IT-EL--APIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYEKLEKKL 566 (733)
T ss_pred ee-cC--CCHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhhcchhhh
Confidence 53 32 33 46789999999999 5666888888888887777776644333
No 122
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.59 E-value=6.6e-06 Score=109.41 Aligned_cols=132 Identities=15% Similarity=0.233 Sum_probs=103.8
Q ss_pred cccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecc
Q 000139 1063 FDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTR 1142 (2062)
Q Consensus 1063 ~dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTr 1142 (2062)
....|+.++..-+..+...|.-|||-|..+..-+.|...|...|+++-.|.-... ++-..++.+ .++.-.+.++|.
T Consensus 430 t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~-~~EA~IIa~---AG~~GaVTIATN 505 (913)
T PRK13103 430 TAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH-EKEAEIIAQ---AGRPGALTIATN 505 (913)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc-hhHHHHHHc---CCCCCcEEEecc
Confidence 3457999999999999999999999999999999999999999999988877543 333344443 233444578899
Q ss_pred ccccccCcc-------------------------------------cCCEEEEecCCCChhhHHHHHHhhhccCCcCcEE
Q 000139 1143 SGGVGINLV-------------------------------------GADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVH 1185 (2062)
Q Consensus 1143 AGG~GLNLT-------------------------------------~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~ 1185 (2062)
.+|.|.++. |.=+||.-..+=|--+|.|..|||+|.|..--..
T Consensus 506 MAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~ 585 (913)
T PRK13103 506 MAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSR 585 (913)
T ss_pred CCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceE
Confidence 999997763 4458999999999999999999999999866555
Q ss_pred EEEEEeCCCHHHHHHHHH
Q 000139 1186 IYRLISESTIEENILKKA 1203 (2062)
Q Consensus 1186 VYRLIse~TIEE~Ilkka 1203 (2062)
.|- |.|+.++.+-
T Consensus 586 f~l-----SlED~Lmr~f 598 (913)
T PRK13103 586 FYL-----SLEDSLMRIF 598 (913)
T ss_pred EEE-----EcCcHHHHhh
Confidence 432 3466666553
No 123
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=98.56 E-value=4.9e-05 Score=90.51 Aligned_cols=147 Identities=20% Similarity=0.170 Sum_probs=109.3
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCCC
Q 000139 521 LKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCPA 599 (2062)
Q Consensus 521 Lk~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw~P~ 599 (2062)
..|+|-++|..+-+-|+..+.+...-|+-.-+|.|||-+....|...... .|.+.|+.|. -++..-...|+.-+++
T Consensus 94 W~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~---G~~vciASPRvDVclEl~~Rlk~aF~~ 170 (441)
T COG4098 94 WKGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQ---GGRVCIASPRVDVCLELYPRLKQAFSN 170 (441)
T ss_pred eccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhc---CCeEEEecCcccchHHHHHHHHHhhcc
Confidence 46999999999999999999999999999999999999888887776543 3578999997 4777777778888888
Q ss_pred CeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCCh-hhHHHHHHHcc--cCce
Q 000139 600 FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNW-KSQRWQTLLNF--NSKR 676 (2062)
Q Consensus 600 lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~-~Sk~~qaL~~L--~a~~ 676 (2062)
..|...||.....- ...-||-||+++++-. ..|++||+||...+--. +-.+..++.+- ....
T Consensus 171 ~~I~~Lyg~S~~~f---------r~plvVaTtHQLlrFk------~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~ 235 (441)
T COG4098 171 CDIDLLYGDSDSYF---------RAPLVVATTHQLLRFK------QAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGA 235 (441)
T ss_pred CCeeeEecCCchhc---------cccEEEEehHHHHHHH------hhccEEEEeccccccccCCHHHHHHHHHhhcccCc
Confidence 88888888765431 1233667777776432 34899999999987321 22334444433 2346
Q ss_pred EEEEeccCC
Q 000139 677 RILLTGTPL 685 (2062)
Q Consensus 677 RLLLTGTPL 685 (2062)
++.|||||.
T Consensus 236 ~IylTATp~ 244 (441)
T COG4098 236 TIYLTATPT 244 (441)
T ss_pred eEEEecCCh
Confidence 899999985
No 124
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.56 E-value=7e-05 Score=93.39 Aligned_cols=214 Identities=21% Similarity=0.232 Sum_probs=146.1
Q ss_pred cchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccc
Q 000139 1065 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSG 1144 (2062)
Q Consensus 1065 SGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAG 1144 (2062)
.|-+.-|..-++...+.|.||||-|=-.+|..-|..||..+|+++..++.....-+|..++..... +.+-| |+...-.
T Consensus 429 ~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~-G~~Dv-LVGINLL 506 (663)
T COG0556 429 KGQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRL-GEFDV-LVGINLL 506 (663)
T ss_pred CCcHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhc-CCccE-EEeehhh
Confidence 345555666666667789999999999999999999999999999999999999999999999975 45555 6778889
Q ss_pred ccccCcccCCEEEEecCC-----CChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000139 1145 GVGINLVGADTVIFYDSD-----WNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGY 1219 (2062)
Q Consensus 1145 G~GLNLT~ADtVIfyD~d-----WNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~qKr~L~~~vIq~g~f 1219 (2062)
-+||+|..+.-|.++|-| -+-....|-+||+-|--. -.|..|-=...+++.+-|-+. +++|.+.-.--..-+.
T Consensus 507 REGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~-GkvIlYAD~iT~sM~~Ai~ET-~RRR~iQ~~yN~~hgI 584 (663)
T COG0556 507 REGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKVILYADKITDSMQKAIDET-ERRREIQMAYNEEHGI 584 (663)
T ss_pred hccCCCcceeEEEEeecCccccccccchHHHHHHHHhhccC-CeEEEEchhhhHHHHHHHHHH-HHHHHHHHHHHHhcCC
Confidence 999999999999999987 467889999999999432 235556555566777777665 3344443333344555
Q ss_pred CccccccCChhhhhcCCCCCchhhhhHHHhhhcCCCccCChhhHHHHHHhhhchHHHHHHHHHhhHHhhh
Q 000139 1220 NTEFFKKLDPMELFSGHRTLPMKTMQKEKAINNGNEVSLSNADVEAALKCVEDEADYMALKRAEQEEAVD 1289 (2062)
Q Consensus 1220 t~~~fk~~di~eLF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~aEde~d~~a~~~~~~e~~~~ 1289 (2062)
++...++ .+.++..+..... ............++..++++.++..|.+ ..+|++..+=|.++.
T Consensus 585 tP~ti~K-~i~d~l~~~~~~~-----~~~~~~~~~~~~~~~~e~~~~I~~Le~~-M~~aA~~l~FE~Aa~ 647 (663)
T COG0556 585 TPQTIKK-KIRDILDGEYEED-----EYKAKIEKKASKMSKKELEKLIKKLEKE-MKEAAKNLEFEEAAR 647 (663)
T ss_pred Cchhhhh-hhhHhhhhhhhhh-----hhhhhcccccccCCHHHHHHHHHHHHHH-HHHHHHhCCHHHHHH
Confidence 6655443 2444443321110 0000001111345777788887777632 556666665555544
No 125
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=98.56 E-value=1.7e-06 Score=116.82 Aligned_cols=105 Identities=19% Similarity=0.226 Sum_probs=96.0
Q ss_pred CCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEEEecC
Q 000139 1082 GHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDS 1161 (2062)
Q Consensus 1082 GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIfyD~ 1161 (2062)
+.-.|||+....+.+.+..+|...|++..-++.+++..+|+.+...|..+. ++| |+.|=|.|-|||-...--||+|-.
T Consensus 485 ~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~-~~V-ivATVAFGMGIdK~DVR~ViH~~l 562 (941)
T KOG0351|consen 485 DQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDK-IRV-IVATVAFGMGIDKPDVRFVIHYSL 562 (941)
T ss_pred CCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCC-CeE-EEEEeeccCCCCCCceeEEEECCC
Confidence 456799999999999999999999999999999999999999999999854 766 677889999999999999999999
Q ss_pred CCChhhHHHHHHhhhccCCcCcEEEEE
Q 000139 1162 DWNPAMDQQAQDRCHRIGQTREVHIYR 1188 (2062)
Q Consensus 1162 dWNPa~d~QA~gRahRIGQTRdV~VYR 1188 (2062)
|=+---.-|-.||++|-|+-..++.|.
T Consensus 563 Pks~E~YYQE~GRAGRDG~~s~C~l~y 589 (941)
T KOG0351|consen 563 PKSFEGYYQEAGRAGRDGLPSSCVLLY 589 (941)
T ss_pred chhHHHHHHhccccCcCCCcceeEEec
Confidence 988888899999999999988877765
No 126
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=98.54 E-value=9.8e-07 Score=116.74 Aligned_cols=125 Identities=17% Similarity=0.181 Sum_probs=108.7
Q ss_pred cchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccc
Q 000139 1065 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSG 1144 (2062)
Q Consensus 1065 SGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAG 1144 (2062)
.|++..|...|+.+...|.+||||+....+.+.|..+|..+|+.+..++|.++..+|..++..|.. +.+.| |++|...
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~-G~i~V-LV~t~~L 502 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRL-GEFDV-LVGINLL 502 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhc-CCceE-EEEcChh
Confidence 578889999999888999999999999999999999999999999999999999999999999975 56665 6788999
Q ss_pred ccccCcccCCEEEEecC-----CCChhhHHHHHHhhhccCCcCcEEEEEEEeCCC
Q 000139 1145 GVGINLVGADTVIFYDS-----DWNPAMDQQAQDRCHRIGQTREVHIYRLISEST 1194 (2062)
Q Consensus 1145 G~GLNLT~ADtVIfyD~-----dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~T 1194 (2062)
+.|+++..++.||++|. +-+.....|++||+.|.+ .-.++-|+...|
T Consensus 503 ~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~---~G~vi~~~~~~~ 554 (655)
T TIGR00631 503 REGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV---NGKVIMYADKIT 554 (655)
T ss_pred cCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC---CCEEEEEEcCCC
Confidence 99999999999999994 447788999999999973 234555666554
No 127
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=98.53 E-value=1e-06 Score=117.02 Aligned_cols=124 Identities=17% Similarity=0.232 Sum_probs=108.4
Q ss_pred cchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccc
Q 000139 1065 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSG 1144 (2062)
Q Consensus 1065 SGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAG 1144 (2062)
.+++..|...|+.+...|.+||||+......+.|..+|..+|+++..++|.++..+|..++..|.. +.+.| |++|...
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~-g~i~v-lV~t~~L 506 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRL-GEFDV-LVGINLL 506 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHc-CCceE-EEEeCHH
Confidence 477888999999888899999999999999999999999999999999999999999999999975 55655 6788999
Q ss_pred ccccCcccCCEEEEecCC-----CChhhHHHHHHhhhccCCcCcEEEEEEEeCC
Q 000139 1145 GVGINLVGADTVIFYDSD-----WNPAMDQQAQDRCHRIGQTREVHIYRLISES 1193 (2062)
Q Consensus 1145 G~GLNLT~ADtVIfyD~d-----WNPa~d~QA~gRahRIGQTRdV~VYRLIse~ 1193 (2062)
+.|+++..++.||++|.+ -++....|++||++| +. .-.++.|+...
T Consensus 507 ~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR-~~--~G~~i~~~~~~ 557 (652)
T PRK05298 507 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NV--NGKVILYADKI 557 (652)
T ss_pred hCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccC-CC--CCEEEEEecCC
Confidence 999999999999999974 488889999999999 42 34466666643
No 128
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.46 E-value=6.6e-07 Score=106.57 Aligned_cols=125 Identities=22% Similarity=0.279 Sum_probs=103.1
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccc
Q 000139 1066 GKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGG 1145 (2062)
Q Consensus 1066 GKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG 1145 (2062)
.|+++|..|---+ .-| ..|||++-..+..+|...|...||.+..|+|.+..++|..++++|.. +.-.| |++|.+++
T Consensus 316 ~K~~~l~~lyg~~-tig-qsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~-g~~kV-LitTnV~A 391 (477)
T KOG0332|consen 316 DKYQALVNLYGLL-TIG-QSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFRE-GKEKV-LITTNVCA 391 (477)
T ss_pred hHHHHHHHHHhhh-hhh-heEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhc-CcceE-EEEechhh
Confidence 5888888854332 223 78999999999999999999999999999999999999999999985 55566 68899999
Q ss_pred cccCcccCCEEEEecCCC------ChhhHHHHHHhhhccCCcCcEEEEEEEeCCCH
Q 000139 1146 VGINLVGADTVIFYDSDW------NPAMDQQAQDRCHRIGQTREVHIYRLISESTI 1195 (2062)
Q Consensus 1146 ~GLNLT~ADtVIfyD~dW------NPa~d~QA~gRahRIGQTRdV~VYRLIse~TI 1195 (2062)
.||+....+.||.||.|- .|.....|+||.+|+|.+ -+-|--+-.+++.
T Consensus 392 RGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkk-G~a~n~v~~~~s~ 446 (477)
T KOG0332|consen 392 RGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKK-GLAINLVDDKDSM 446 (477)
T ss_pred cccccceEEEEEecCCccccCCCCCHHHHHHHhccccccccc-ceEEEeecccCcH
Confidence 999999999999999874 467889999999999964 3444333344554
No 129
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.42 E-value=8.7e-07 Score=105.91 Aligned_cols=120 Identities=21% Similarity=0.333 Sum_probs=107.7
Q ss_pred cccccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEe
Q 000139 1061 IQFDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILS 1140 (2062)
Q Consensus 1061 iq~dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLS 1140 (2062)
+..++-|+..+..++..+ +...|||||....-|.|-|..-|...||..--|+|+..+.+|+..++.|.. +.+++ |+.
T Consensus 445 v~~d~~k~~~~~~f~~~m-s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ks-G~vrI-Lva 521 (629)
T KOG0336|consen 445 VTTDSEKLEIVQFFVANM-SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKS-GEVRI-LVA 521 (629)
T ss_pred ecccHHHHHHHHHHHHhc-CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhc-CceEE-EEE
Confidence 455778887777777665 556799999999999999999999999999999999999999999999986 67777 678
Q ss_pred ccccccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCc
Q 000139 1141 TRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTRE 1183 (2062)
Q Consensus 1141 TrAGG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRd 1183 (2062)
|..++.||++....||+.||-|-|-.....++||.+|-|.|-.
T Consensus 522 TDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~ 564 (629)
T KOG0336|consen 522 TDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGT 564 (629)
T ss_pred echhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcc
Confidence 9999999999999999999999999999999999999997654
No 130
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.31 E-value=6.4e-05 Score=99.46 Aligned_cols=134 Identities=14% Similarity=0.218 Sum_probs=106.5
Q ss_pred cccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecc
Q 000139 1063 FDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTR 1142 (2062)
Q Consensus 1063 ~dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTr 1142 (2062)
....|+.++..-+.++...|.-|||.|.....-..|...|...|+.+-.|+.... +.-..++. ..++.-.+.++|.
T Consensus 407 t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~-e~EA~IIa---~AG~~GaVTIATN 482 (925)
T PRK12903 407 TKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN-AREAEIIA---KAGQKGAITIATN 482 (925)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch-hhHHHHHH---hCCCCCeEEEecc
Confidence 3458999999999999999999999999999999999999999999999988644 22233443 2344555678899
Q ss_pred ccccccCcccCC--------EEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHHH
Q 000139 1143 SGGVGINLVGAD--------TVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQ 1205 (2062)
Q Consensus 1143 AGG~GLNLT~AD--------tVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~q 1205 (2062)
.+|.|.++.-.. +||....+=|--+|.|..||++|.|..-....|- |+|+.++.+-..
T Consensus 483 MAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~l-----SLeD~L~r~f~~ 548 (925)
T PRK12903 483 MAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFI-----SLDDQLFRRFSN 548 (925)
T ss_pred cccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEE-----ecchHHHHHhCC
Confidence 999998875333 9999999999999999999999999876655543 556777765443
No 131
>PLN03212 Transcription repressor MYB5; Provisional
Probab=98.30 E-value=1.1e-06 Score=101.05 Aligned_cols=74 Identities=20% Similarity=0.394 Sum_probs=58.6
Q ss_pred CCCCChhhhHHHHHHHHhcCC-CchhHHHHhhccccCccccccccCChhhHHHHHHHHHHHHHhCCCCCccccccccccc
Q 000139 1660 PDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVPDNSINEKTSNVGSG 1738 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1738 (2062)
+++|+++||++|..+|+.||. ||..|+..+ |..|.++|||+||.+++.-.. +.+
T Consensus 25 Rg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~----------g~gRT~KQCReRW~N~L~P~I-------------~kg-- 79 (249)
T PLN03212 25 RGPWTVEEDEILVSFIKKEGEGRWRSLPKRA----------GLLRCGKSCRLRWMNYLRPSV-------------KRG-- 79 (249)
T ss_pred CCCCCHHHHHHHHHHHHHhCcccHHHHHHhh----------hcCCCcchHHHHHHHhhchhc-------------ccC--
Confidence 789999999999999999997 799999754 245999999999999984321 222
Q ss_pred ceeEeechHHHHHHHHHHHhccch
Q 000139 1739 KALLKVTEDNVRTLLNVAAEQEDN 1762 (2062)
Q Consensus 1739 ~~~~~~~~~~~~~~~~~~~~~~~~ 1762 (2062)
.-|++.-+.||..+....++
T Consensus 80 ----pWT~EED~lLlel~~~~GnK 99 (249)
T PLN03212 80 ----GITSDEEDLILRLHRLLGNR 99 (249)
T ss_pred ----CCChHHHHHHHHHHHhcccc
Confidence 46777778888877665544
No 132
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=98.27 E-value=7.6e-07 Score=104.63 Aligned_cols=82 Identities=15% Similarity=0.293 Sum_probs=66.1
Q ss_pred CCCCChhhhHHHHHHHHhcCC-CchhHHHHhhccccCccccccccCChhhHHHHHHHHHHHHHhCCCCCccccccccccc
Q 000139 1660 PDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVPDNSINEKTSNVGSG 1738 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1738 (2062)
+|||+++||.+|..+|..||+ ||..|+..+ |-.|.+++||+||-+++.-..- .|
T Consensus 9 kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~----------gl~R~GKSCRlRW~NyLrP~ik-------------rg-- 63 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSFGKHNGTALPKLA----------GLRRCGKSCRLRWTNYLRPDLK-------------RG-- 63 (238)
T ss_pred CCCCChHHHHHHHHHHHHhCCCCcchhhhhc----------CCCccchHHHHHhhcccCCCcc-------------CC--
Confidence 799999999999999999999 799999965 3469999999999988743221 22
Q ss_pred ceeEeechHHHHHHHHHHHhccchHHHHHHHH
Q 000139 1739 KALLKVTEDNVRTLLNVAAEQEDNELLLQKHF 1770 (2062)
Q Consensus 1739 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1770 (2062)
..|+++.+.|+.+-+.+-|+--+.-+|+
T Consensus 64 ----~fT~eEe~~Ii~lH~~~GNrWs~IA~~L 91 (238)
T KOG0048|consen 64 ----NFSDEEEDLIIKLHALLGNRWSLIAGRL 91 (238)
T ss_pred ----CCCHHHHHHHHHHHHHHCcHHHHHHhhC
Confidence 4799999999998777777655555554
No 133
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=98.22 E-value=7.1e-06 Score=97.77 Aligned_cols=130 Identities=22% Similarity=0.300 Sum_probs=109.5
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccc
Q 000139 1066 GKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGG 1145 (2062)
Q Consensus 1066 GKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG 1145 (2062)
.|+-.|...|++ ..-.||||+.-..-.|-|..||-..|+..+-|+|+...++|...++.|..+.+ -| |+.|.+++
T Consensus 408 aKiVylLeCLQK---T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkK-DV-LVATDVAS 482 (610)
T KOG0341|consen 408 AKIVYLLECLQK---TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKK-DV-LVATDVAS 482 (610)
T ss_pred hhhhhHHHHhcc---CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCC-ce-EEEecchh
Confidence 577777777765 45699999999999999999999999999999999999999999999997433 34 68899999
Q ss_pred cccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHH
Q 000139 1146 VGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKK 1202 (2062)
Q Consensus 1146 ~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkk 1202 (2062)
-||++++..|||.||.+-.--....++||.+|-|.|--. ..||-+++-|--++..
T Consensus 483 KGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiA--TTfINK~~~esvLlDL 537 (610)
T KOG0341|consen 483 KGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIA--TTFINKNQEESVLLDL 537 (610)
T ss_pred ccCCCccchhhccCCChHHHHHHHHHhcccCCCCCccee--eeeecccchHHHHHHH
Confidence 999999999999999988888888899999988876543 3477777766555543
No 134
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.16 E-value=3e-06 Score=99.20 Aligned_cols=121 Identities=23% Similarity=0.313 Sum_probs=106.4
Q ss_pred cchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccc
Q 000139 1065 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSG 1144 (2062)
Q Consensus 1065 SGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAG 1144 (2062)
+-|+..|-.|+.+|.- ...|||++.+...++|..-+...||.+..++..|..+.|......|.+ +.|+. |+.|+-.
T Consensus 307 ~qKvhCLntLfskLqI--NQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~-G~crn-LVctDL~ 382 (459)
T KOG0326|consen 307 RQKVHCLNTLFSKLQI--NQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRN-GKCRN-LVCTDLF 382 (459)
T ss_pred hhhhhhHHHHHHHhcc--cceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhc-cccce-eeehhhh
Confidence 3588888888888754 378999999999999999999999999999999999999999999985 77887 5667999
Q ss_pred ccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEe
Q 000139 1145 GVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLIS 1191 (2062)
Q Consensus 1145 G~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIs 1191 (2062)
-.||++++.|.||.||-+-|+-....++||.+|.|- .-.-..||+
T Consensus 383 TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGh--lGlAInLit 427 (459)
T KOG0326|consen 383 TRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGH--LGLAINLIT 427 (459)
T ss_pred hcccccceeeEEEecCCCCCHHHHHHHccCCccCCC--cceEEEEEe
Confidence 999999999999999999999999999999999994 323344554
No 135
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=6.9e-06 Score=99.10 Aligned_cols=128 Identities=24% Similarity=0.327 Sum_probs=110.6
Q ss_pred hHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccccc
Q 000139 1067 KLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGV 1146 (2062)
Q Consensus 1067 KLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~ 1146 (2062)
|+..|..+.+ .-...+||++-.+-++.|...|..+|++..-++|.+...+|..++..|+. +..+| |++|.-.+.
T Consensus 252 k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~-gssrv-lIttdl~ar 325 (397)
T KOG0327|consen 252 KLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRS-GSSRV-LITTDLLAR 325 (397)
T ss_pred cccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhc-CCceE-Eeecccccc
Confidence 8888888887 33468999999999999999999999999999999999999999999987 55677 678889999
Q ss_pred ccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHH
Q 000139 1147 GINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAN 1204 (2062)
Q Consensus 1147 GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~ 1204 (2062)
||+++..+-||.||.|=|+.....++||.+|.|. +-.+..++++++ +++++...
T Consensus 326 gidv~~~slvinydlP~~~~~yihR~gr~gr~gr--kg~~in~v~~~d--~~~lk~ie 379 (397)
T KOG0327|consen 326 GIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGR--KGVAINFVTEED--VRDLKDIE 379 (397)
T ss_pred ccchhhcceeeeeccccchhhhhhhcccccccCC--CceeeeeehHhh--HHHHHhHH
Confidence 9999999999999999999999999999999994 445556777764 46665533
No 136
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.13 E-value=9.1e-05 Score=98.87 Aligned_cols=156 Identities=19% Similarity=0.132 Sum_probs=91.9
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHHhcCC--------CCcEEEEecC-CcHHHHHHHHHHHCCCCeEEE--EeCChh
Q 000139 542 KRLNGILADEMGLGKTIMTIAMLAHLACEKGI--------WGPHLIVVPT-SVMLNWETEFLKWCPAFKILT--YFGSAK 610 (2062)
Q Consensus 542 ~~~gGILADEMGLGKTIQaIALLa~L~~~~g~--------~Gp~LIVvPt-SLL~QW~~Efkkw~P~lkVl~--y~Gs~k 610 (2062)
...|-+||..+|.|||..|+.-+..-...+.. ...+.-|+|. +|+..|...|.+|..++.|-+ ..|...
T Consensus 324 ~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~ 403 (1674)
T KOG0951|consen 324 GDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQ 403 (1674)
T ss_pred CcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEeccccc
Confidence 34567899999999999887655543322111 1245667886 678889999999987655544 445433
Q ss_pred hHHhhhhccCCCCCceEEEEehhhh---hhchhhh-hccCeeEEEEcCcccc---CCh--hhHHHHHHHcc----cCceE
Q 000139 611 ERKFKRQGWLKPNSFHVCITTYRLI---IQDSKVF-KRKKWKYLILDEAHLI---KNW--KSQRWQTLLNF----NSKRR 677 (2062)
Q Consensus 611 erk~~r~gw~k~~~fdVVITSYe~l---~~d~~~L-~r~~W~lVILDEAH~I---KN~--~Sk~~qaL~~L----~a~~R 677 (2062)
..+.. ...-.|+++|.+.. .+..... ..--++++|+||.|.+ +.+ .|-..+..+.. ...+.
T Consensus 404 l~~~q------ieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~ses~~e~~Rl 477 (1674)
T KOG0951|consen 404 LGKEQ------IEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVARTFRRSESTEEGSRL 477 (1674)
T ss_pred chhhh------hhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHHHHHHHhhhcccCcee
Confidence 22111 12345888887654 2211000 0012578999999999 332 13333444433 23478
Q ss_pred EEEeccCCCCChHHHHHHHHHhCCCCCC
Q 000139 678 ILLTGTPLQNDLMELWSLMHFLMPHIFQ 705 (2062)
Q Consensus 678 LLLTGTPLQNsL~ELwSLL~FL~P~iF~ 705 (2062)
++||||-- |.+|.-+.++.-.+++|-
T Consensus 478 VGLSATLP--Ny~DV~~Fl~v~~~glf~ 503 (1674)
T KOG0951|consen 478 VGLSATLP--NYEDVASFLRVDPEGLFY 503 (1674)
T ss_pred eeecccCC--chhhhHHHhccCcccccc
Confidence 99999953 567766644433355553
No 137
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=98.11 E-value=2.6e-06 Score=75.71 Aligned_cols=47 Identities=26% Similarity=0.615 Sum_probs=40.6
Q ss_pred CCCCChhhhHHHHHHHHhcCCC-chhHHHHhhccccCccccccccCChhhHHHHHHHH
Q 000139 1660 PDVWLPQEDAILCAVVHEYGPN-WSLVSDILYGMTASGYYRGRYRHPVHCCERFRELI 1716 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~n-w~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~ 1716 (2062)
+++||++||..|..+|..||.+ |..|+..| + ..|++.+|+.||..|+
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~---~-------~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRM---P-------GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHH---S-------SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHc---C-------CCCCHHHHHHHHHhhC
Confidence 3789999999999999999997 99999988 2 3599999999999873
No 138
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.09 E-value=0.00043 Score=93.05 Aligned_cols=129 Identities=16% Similarity=0.256 Sum_probs=102.1
Q ss_pred cchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccc
Q 000139 1065 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSG 1144 (2062)
Q Consensus 1065 SGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAG 1144 (2062)
-.|+.++..-+.++...|.-|||-|..+..-.+|...|...|+++-.|..... ++-..++.+= ++.-.+.++|.-+
T Consensus 611 ~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h-~~EAeIVA~A---G~~GaVTIATNMA 686 (1112)
T PRK12901 611 REKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH-QKEAEIVAEA---GQPGTVTIATNMA 686 (1112)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch-hhHHHHHHhc---CCCCcEEEeccCc
Confidence 47999999999999999999999999999999999999999999988876543 2223444432 2333346789999
Q ss_pred ccccCcc--------cCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHH
Q 000139 1145 GVGINLV--------GADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKK 1202 (2062)
Q Consensus 1145 G~GLNLT--------~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkk 1202 (2062)
|.|-++. |.=+||.-..+=+..+|.|..||++|.|..-....|- |.|+.++.+
T Consensus 687 GRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~l-----SLEDdLmr~ 747 (1112)
T PRK12901 687 GRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYV-----SLEDNLMRL 747 (1112)
T ss_pred CCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEE-----EcccHHHHh
Confidence 9998765 5678999999999999999999999999765544432 456666654
No 139
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.06 E-value=4.7e-05 Score=102.58 Aligned_cols=140 Identities=19% Similarity=0.226 Sum_probs=92.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHH-HH---------HHHHHHCCC--CeEEEEeCChhh
Q 000139 544 LNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLN-WE---------TEFLKWCPA--FKILTYFGSAKE 611 (2062)
Q Consensus 544 ~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~Q-W~---------~Efkkw~P~--lkVl~y~Gs~ke 611 (2062)
.+..+..++|.|||.+++.+|..|....| +..+|||||...+.. .. ..|...+++ +.+.+|....+.
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~-~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~ 138 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYG-LFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKK 138 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCccc
Confidence 35678999999999999999999877655 578999999954433 22 223333333 455566544311
Q ss_pred H-------HhhhhccC-----CCCCceEEEEehhhhhhchh------hh--hc--cCe-------eEEEEcCccccCChh
Q 000139 612 R-------KFKRQGWL-----KPNSFHVCITTYRLIIQDSK------VF--KR--KKW-------KYLILDEAHLIKNWK 662 (2062)
Q Consensus 612 r-------k~~r~gw~-----k~~~fdVVITSYe~l~~d~~------~L--~r--~~W-------~lVILDEAH~IKN~~ 662 (2062)
+ ...+ .+. ..+..+|+|+|.+.+..+.. .+ .. ..| -.||+||+|++.. .
T Consensus 139 k~gr~~~~~~i~-~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~-~ 216 (986)
T PRK15483 139 KSGRKNFPAQLS-NFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPR-D 216 (986)
T ss_pred ccccccChHHHH-HHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCc-c
Confidence 0 0111 111 22368999999998866421 11 11 223 3699999999965 3
Q ss_pred hHHHHHHHcccCceEEEEeccCCC
Q 000139 663 SQRWQTLLNFNSKRRILLTGTPLQ 686 (2062)
Q Consensus 663 Sk~~qaL~~L~a~~RLLLTGTPLQ 686 (2062)
.+.|.++..++..+.|..|||--.
T Consensus 217 ~k~~~~i~~lnpl~~lrysAT~~~ 240 (986)
T PRK15483 217 NKFYQAIEALKPQMIIRFGATFPD 240 (986)
T ss_pred hHHHHHHHhcCcccEEEEeeecCC
Confidence 458899999999999999999643
No 140
>PLN03091 hypothetical protein; Provisional
Probab=98.04 E-value=5.7e-06 Score=101.32 Aligned_cols=81 Identities=20% Similarity=0.373 Sum_probs=62.6
Q ss_pred CCCCChhhhHHHHHHHHhcCC-CchhHHHHhhccccCccccccccCChhhHHHHHHHHHHHHHhCCCCCccccccccccc
Q 000139 1660 PDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVPDNSINEKTSNVGSG 1738 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1738 (2062)
+++|+++||++|..+|+.||. ||..|+..+ |..|.+++||+||..++.-.. ..+
T Consensus 14 Kg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~----------g~gRT~KQCRERW~NyLdP~I-------------kKg-- 68 (459)
T PLN03091 14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQA----------GLQRCGKSCRLRWINYLRPDL-------------KRG-- 68 (459)
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHhhhh----------ccCcCcchHhHHHHhccCCcc-------------cCC--
Confidence 789999999999999999998 799999754 345999999999998873211 122
Q ss_pred ceeEeechHHHHHHHHHHHhccchHHHHHHH
Q 000139 1739 KALLKVTEDNVRTLLNVAAEQEDNELLLQKH 1769 (2062)
Q Consensus 1739 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1769 (2062)
.-|.+.-+.||..+..+..+=-.+.++
T Consensus 69 ----pWT~EED~lLLeL~k~~GnKWskIAk~ 95 (459)
T PLN03091 69 ----TFSQQEENLIIELHAVLGNRWSQIAAQ 95 (459)
T ss_pred ----CCCHHHHHHHHHHHHHhCcchHHHHHh
Confidence 478888899998887776554444433
No 141
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=98.01 E-value=0.00015 Score=87.92 Aligned_cols=102 Identities=19% Similarity=0.278 Sum_probs=90.3
Q ss_pred EEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEEEecCCCC
Q 000139 1085 ALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWN 1164 (2062)
Q Consensus 1085 VLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIfyD~dWN 1164 (2062)
-|||+.-..-...+...|...||...-++.+.+..+|-...+.+-+ .++.| |+.|-+.|.|++=....-||++|++-|
T Consensus 258 GIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~-~~~Pv-I~AT~SFGMGVDKp~VRFViHW~~~qn 335 (641)
T KOG0352|consen 258 GIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMN-NEIPV-IAATVSFGMGVDKPDVRFVIHWSPSQN 335 (641)
T ss_pred eEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhc-CCCCE-EEEEeccccccCCcceeEEEecCchhh
Confidence 3788888888888889999999999999999999999999999986 45555 788999999999999999999999999
Q ss_pred hhhHHHHHHhhhccCCcCcEEEEE
Q 000139 1165 PAMDQQAQDRCHRIGQTREVHIYR 1188 (2062)
Q Consensus 1165 Pa~d~QA~gRahRIGQTRdV~VYR 1188 (2062)
-+-.-|--||++|-|-.-=++.|+
T Consensus 336 ~AgYYQESGRAGRDGk~SyCRLYY 359 (641)
T KOG0352|consen 336 LAGYYQESGRAGRDGKRSYCRLYY 359 (641)
T ss_pred hHHHHHhccccccCCCccceeeee
Confidence 999999999999999766666654
No 142
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=98.01 E-value=0.00036 Score=83.10 Aligned_cols=161 Identities=20% Similarity=0.187 Sum_probs=109.7
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCCCCeE
Q 000139 524 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCPAFKI 602 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw~P~lkV 602 (2062)
.+||.|+.+++-.+. +...+|...+|-||++.-- .-.++. .|-.|||||. |++......++...-....
T Consensus 94 kfrplq~~ain~~ma----~ed~~lil~tgggkslcyq---lpal~a---dg~alvi~plislmedqil~lkqlgi~as~ 163 (695)
T KOG0353|consen 94 KFRPLQLAAINATMA----GEDAFLILPTGGGKSLCYQ---LPALCA---DGFALVICPLISLMEDQILQLKQLGIDASM 163 (695)
T ss_pred hcChhHHHHhhhhhc----cCceEEEEeCCCccchhhh---hhHHhc---CCceEeechhHHHHHHHHHHHHHhCcchhh
Confidence 479999999986654 5667888999999996321 111222 2568999998 7888888888887655555
Q ss_pred EEEeCChhhHHhhhhccC-CCCCceEEEEehhhhhhchhh-------hhccCeeEEEEcCccccCChh-------hHHHH
Q 000139 603 LTYFGSAKERKFKRQGWL-KPNSFHVCITTYRLIIQDSKV-------FKRKKWKYLILDEAHLIKNWK-------SQRWQ 667 (2062)
Q Consensus 603 l~y~Gs~kerk~~r~gw~-k~~~fdVVITSYe~l~~d~~~-------L~r~~W~lVILDEAH~IKN~~-------Sk~~q 667 (2062)
+....+..+.+....... +...|..+..|.+.+.+...+ +....+.+|-+||.|....+. +.+..
T Consensus 164 lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~i 243 (695)
T KOG0353|consen 164 LNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGI 243 (695)
T ss_pred ccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHH
Confidence 555555555444333332 446788999999887765433 444578999999999875432 33333
Q ss_pred HHHcccCceEEEEeccCCCCChHHHHH
Q 000139 668 TLLNFNSKRRILLTGTPLQNDLMELWS 694 (2062)
Q Consensus 668 aL~~L~a~~RLLLTGTPLQNsL~ELwS 694 (2062)
.-++|+....++||+|...|-|.+.-.
T Consensus 244 lkrqf~~~~iigltatatn~vl~d~k~ 270 (695)
T KOG0353|consen 244 LKRQFKGAPIIGLTATATNHVLDDAKD 270 (695)
T ss_pred HHHhCCCCceeeeehhhhcchhhHHHH
Confidence 335677778899999987766555433
No 143
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.00 E-value=3.2e-05 Score=83.61 Aligned_cols=130 Identities=19% Similarity=0.200 Sum_probs=72.9
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCeEEEEeCChhhHHhhhhccCC
Q 000139 542 KRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLK 621 (2062)
Q Consensus 542 ~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw~P~lkVl~y~Gs~kerk~~r~gw~k 621 (2062)
++.--+|-.-.|.|||..++--+......+ .+.+||+.|+-++. .|+.+...+..+ .|+.+...+. .
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~--~~rvLvL~PTRvva---~em~~aL~~~~~-~~~t~~~~~~-------~ 69 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKR--RLRVLVLAPTRVVA---EEMYEALKGLPV-RFHTNARMRT-------H 69 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHT--T--EEEEESSHHHH---HHHHHHTTTSSE-EEESTTSS----------
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHc--cCeEEEecccHHHH---HHHHHHHhcCCc-ccCceeeecc-------c
Confidence 344457777899999998876554433333 35899999998774 455555545543 2332222111 1
Q ss_pred CCCceEEEEehhhhhhch-hhhhccCeeEEEEcCccccCChhhHHHHHH-Hcc---cCceEEEEeccCC
Q 000139 622 PNSFHVCITTYRLIIQDS-KVFKRKKWKYLILDEAHLIKNWKSQRWQTL-LNF---NSKRRILLTGTPL 685 (2062)
Q Consensus 622 ~~~fdVVITSYe~l~~d~-~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL-~~L---~a~~RLLLTGTPL 685 (2062)
.++--|-+++|.++.... ..-+..+|++||+||||-. ++.|-..+-. ..+ .....+++||||-
T Consensus 70 ~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTATPP 137 (148)
T PF07652_consen 70 FGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTATPP 137 (148)
T ss_dssp -SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-T
T ss_pred cCCCcccccccHHHHHHhcCcccccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCCCC
Confidence 234457788998876542 2344568999999999974 4444433332 222 2236899999995
No 144
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.00 E-value=0.00061 Score=92.11 Aligned_cols=73 Identities=14% Similarity=0.106 Sum_probs=47.8
Q ss_pred eEEEEehhhhhhchh--hhhccCeeEEEEcCccccCChhhHHHHHHHcc----cCceEEEEeccCCCC--ChHHHHHHHH
Q 000139 626 HVCITTYRLIIQDSK--VFKRKKWKYLILDEAHLIKNWKSQRWQTLLNF----NSKRRILLTGTPLQN--DLMELWSLMH 697 (2062)
Q Consensus 626 dVVITSYe~l~~d~~--~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L----~a~~RLLLTGTPLQN--sL~ELwSLL~ 697 (2062)
.|++.|.+++..|.- .+.-..+..|||||||++....+-.+ .++.+ +..+..++|+.|-.. .+..+-.+|.
T Consensus 9 gi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaF-I~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~vmk 87 (814)
T TIGR00596 9 GIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAF-ILRLYRQKNKTGFIKAFSDNPEAFTMGFSPLETKMR 87 (814)
T ss_pred CEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHH-HHHHHHHhCCCcceEEecCCCcccccchHHHHHHHH
Confidence 388888999988842 23334578999999999975433322 22323 345799999999753 3445555555
Q ss_pred Hh
Q 000139 698 FL 699 (2062)
Q Consensus 698 FL 699 (2062)
-|
T Consensus 88 ~L 89 (814)
T TIGR00596 88 NL 89 (814)
T ss_pred Hh
Confidence 55
No 145
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=97.99 E-value=4.8e-06 Score=72.56 Aligned_cols=47 Identities=32% Similarity=0.703 Sum_probs=42.7
Q ss_pred CCCCChhhhHHHHHHHHhcC-CCchhHHHHhhccccCccccccccCChhhHHHHHHHHH
Q 000139 1660 PDVWLPQEDAILCAVVHEYG-PNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQ 1717 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g-~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~ 1717 (2062)
+++|+++||.+|..+|+.|| .+|..|+..| + .|++.+|+.||..++.
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~---~--------~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKEL---P--------GRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHc---C--------CCCHHHHHHHHHHHcC
Confidence 36899999999999999999 8999999988 2 6999999999998763
No 146
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=97.98 E-value=4.2e-06 Score=77.52 Aligned_cols=43 Identities=33% Similarity=0.816 Sum_probs=37.0
Q ss_pred CChhhhHHHHHHHHhcCCCchhHHHHhhccccCccccccccCChhhHHHHHHHH
Q 000139 1663 WLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELI 1716 (2062)
Q Consensus 1663 w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~ 1716 (2062)
||++||++|..+|.+||.+|..||..| -+|+|.+|+.||+..+
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l-----------~~Rt~~~~~~r~~~~l 43 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHL-----------GNRTPKQCRNRWRNHL 43 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHS-----------TTS-HHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHH-----------CcCCHHHHHHHHHHHC
Confidence 999999999999999999999999987 1799999999999944
No 147
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=97.79 E-value=0.011 Score=79.75 Aligned_cols=102 Identities=20% Similarity=0.222 Sum_probs=75.3
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHHcCCc-EEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCccc--CCEEE
Q 000139 1081 DGHRALIFTQMTKMLDILEEFISLYGYT-YMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVG--ADTVI 1157 (2062)
Q Consensus 1081 ~GhKVLIFSQ~t~mLDILe~~L~~~Gi~-y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~--ADtVI 1157 (2062)
.+.++|||...-.++..+...|...... .+...|.++ +..++++|...... .|++.+.+..+|||+.+ ...||
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~-~~lv~~gsf~EGVD~~g~~l~~vv 553 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEG-LILVGGGSFWEGVDFPGDALRLVV 553 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCC-eEEEeeccccCcccCCCCCeeEEE
Confidence 3448999998889999888888876653 455566665 44899999986654 56788899999999987 57888
Q ss_pred EecCCCC-h-----------------------------hhHHHHHHhhhccCCcCcEEE
Q 000139 1158 FYDSDWN-P-----------------------------AMDQQAQDRCHRIGQTREVHI 1186 (2062)
Q Consensus 1158 fyD~dWN-P-----------------------------a~d~QA~gRahRIGQTRdV~V 1186 (2062)
+.-.|+= | ....||+||+.|-=+.+-|.|
T Consensus 554 I~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~iv 612 (654)
T COG1199 554 IVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIV 612 (654)
T ss_pred EEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEE
Confidence 8877763 1 123699999999544454443
No 148
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.73 E-value=0.00034 Score=84.84 Aligned_cols=72 Identities=17% Similarity=0.040 Sum_probs=52.5
Q ss_pred CcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCC---CCcEEEEecCC-cHHHHHHHHHHH
Q 000139 525 LREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGI---WGPHLIVVPTS-VMLNWETEFLKW 596 (2062)
Q Consensus 525 LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~---~Gp~LIVvPtS-LL~QW~~Efkkw 596 (2062)
.||.|+.-+.-+...+..+..+|+--.+|.|||+..+..+.......+. ..++++++++. .+.+=..++++.
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 5999999999999988889999999999999999888666443333222 13677777774 444445555554
No 149
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.73 E-value=0.00034 Score=84.84 Aligned_cols=72 Identities=17% Similarity=0.040 Sum_probs=52.5
Q ss_pred CcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCC---CCcEEEEecCC-cHHHHHHHHHHH
Q 000139 525 LREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGI---WGPHLIVVPTS-VMLNWETEFLKW 596 (2062)
Q Consensus 525 LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~---~Gp~LIVvPtS-LL~QW~~Efkkw 596 (2062)
.||.|+.-+.-+...+..+..+|+--.+|.|||+..+..+.......+. ..++++++++. .+.+=..++++.
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 5999999999999988889999999999999999888666443333222 13677777774 444445555554
No 150
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=97.63 E-value=0.028 Score=75.82 Aligned_cols=84 Identities=14% Similarity=0.216 Sum_probs=67.9
Q ss_pred ccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCC-CHHHHHHHHHHHhcCCCceEEEEecc
Q 000139 1064 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGST-QPEERQTLMQRFNTNPKIFLFILSTR 1142 (2062)
Q Consensus 1064 dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsT-s~eqRq~lmerFN~D~~IfVfLLSTr 1142 (2062)
...|+.++..-+..+...|.-|||-|..+..-+.|...|...|+++-.|.... ..++-..+|.+ .++.-.+.++|.
T Consensus 406 ~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~---AG~~G~VTIATN 482 (870)
T CHL00122 406 ELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQ---AGRKGSITIATN 482 (870)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHh---cCCCCcEEEecc
Confidence 45699999999999999999999999999999999999999999999998874 33444455554 244445578899
Q ss_pred ccccccCc
Q 000139 1143 SGGVGINL 1150 (2062)
Q Consensus 1143 AGG~GLNL 1150 (2062)
.+|.|.++
T Consensus 483 MAGRGTDI 490 (870)
T CHL00122 483 MAGRGTDI 490 (870)
T ss_pred ccCCCcCe
Confidence 99998653
No 151
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.54 E-value=0.00036 Score=96.46 Aligned_cols=140 Identities=21% Similarity=0.099 Sum_probs=87.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCCCCeEEEEeCChhhHHhhhhccCC
Q 000139 543 RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLK 621 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw~P~lkVl~y~Gs~kerk~~r~gw~k 621 (2062)
+.+|++.+-.|.|||++++-+...+.. ......++|||=. -|-.|-..+|..+........-..+...-+... .
T Consensus 273 ~~~G~IWHtqGSGKTlTm~~~A~~l~~-~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~~~~s~~~Lk~~l----~ 347 (962)
T COG0610 273 GKGGYIWHTQGSGKTLTMFKLARLLLE-LPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDPKAESTSELKELL----E 347 (962)
T ss_pred CCceEEEeecCCchHHHHHHHHHHHHh-ccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcccccCHHHHHHHH----h
Confidence 457999999999999988655444444 3333345555544 578889999998875444333122222221111 1
Q ss_pred CCCceEEEEehhhhhhchhh----hhccCeeEEEEcCccccCChhhHHHHHH-HcccCceEEEEeccCCCCCh
Q 000139 622 PNSFHVCITTYRLIIQDSKV----FKRKKWKYLILDEAHLIKNWKSQRWQTL-LNFNSKRRILLTGTPLQNDL 689 (2062)
Q Consensus 622 ~~~fdVVITSYe~l~~d~~~----L~r~~W~lVILDEAH~IKN~~Sk~~qaL-~~L~a~~RLLLTGTPLQNsL 689 (2062)
...-.|+|||-+.|...... ....+.-+||+||||+--... ..+.+ ..|..-.-+++||||+...-
T Consensus 348 ~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G~--~~~~~~~~~~~a~~~gFTGTPi~~~d 418 (962)
T COG0610 348 DGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYGE--LAKLLKKALKKAIFIGFTGTPIFKED 418 (962)
T ss_pred cCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccccH--HHHHHHHHhccceEEEeeCCcccccc
Confidence 12346999999988765422 345667899999999854322 22222 23345678999999997543
No 152
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.53 E-value=0.00019 Score=85.72 Aligned_cols=94 Identities=18% Similarity=0.194 Sum_probs=73.1
Q ss_pred HHHHHHhcCCCceEEEEeccccccccCcccC----C---E-EEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCC
Q 000139 1123 TLMQRFNTNPKIFLFILSTRSGGVGINLVGA----D---T-VIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISEST 1194 (2062)
Q Consensus 1123 ~lmerFN~D~~IfVfLLSTrAGG~GLNLT~A----D---t-VIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~T 1194 (2062)
...++|++ +...|+|+| ++||.||.|++- | + -|.++++|+.....|-.||+||-||..+..+.-|++.-.
T Consensus 52 ~e~~~F~~-g~k~v~iis-~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~ 129 (278)
T PF13871_consen 52 AEKQAFMD-GEKDVAIIS-DAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLP 129 (278)
T ss_pred HHHHHHhC-CCceEEEEe-cccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCH
Confidence 45678986 467787886 999999999952 2 3 468999999999999999999999998855444555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Q 000139 1195 IEENILKKANQKRALDDLVIQSGG 1218 (2062)
Q Consensus 1195 IEE~Ilkka~qKr~L~~~vIq~g~ 1218 (2062)
.|.|+.....+|..-..+...+..
T Consensus 130 gE~Rfas~va~rL~sLgAlt~gdr 153 (278)
T PF13871_consen 130 GERRFASTVARRLESLGALTRGDR 153 (278)
T ss_pred HHHHHHHHHHHHHhhccccccCcc
Confidence 899999888877776665555443
No 153
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=97.52 E-value=0.00038 Score=92.34 Aligned_cols=128 Identities=22% Similarity=0.336 Sum_probs=92.7
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC-cHHHHHHHHHHHC----
Q 000139 523 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS-VMLNWETEFLKWC---- 597 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtS-LL~QW~~Efkkw~---- 597 (2062)
..|+..|+..+..++. ...-.|+| .+|+|||.-.+..-+++++ +| +..+||+|+. |+.|-..-|+++.
T Consensus 81 ~~~ws~QR~WakR~~r---g~SFaiiA-PTGvGKTTfg~~~sl~~a~-kg--kr~yii~PT~~Lv~Q~~~kl~~~~e~~~ 153 (1187)
T COG1110 81 FRPWSAQRVWAKRLVR---GKSFAIIA-PTGVGKTTFGLLMSLYLAK-KG--KRVYIIVPTTTLVRQVYERLKKFAEDAG 153 (1187)
T ss_pred CCchHHHHHHHHHHHc---CCceEEEc-CCCCchhHHHHHHHHHHHh-cC--CeEEEEecCHHHHHHHHHHHHHHHhhcC
Confidence 4678889875555443 44455666 5999999776666566655 33 6899999996 6777788888877
Q ss_pred -CCCeEEEEeCChhhHH-hhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCcccc
Q 000139 598 -PAFKILTYFGSAKERK-FKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLI 658 (2062)
Q Consensus 598 -P~lkVl~y~Gs~kerk-~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~I 658 (2062)
....++ ||+.-..+. .....-...+.|||+|||-+.+.+....+.+.+|++|++|-+..+
T Consensus 154 ~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~ 215 (1187)
T COG1110 154 SLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAI 215 (1187)
T ss_pred Ccceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHH
Confidence 233344 898733221 111223455789999999999999999999999999999998865
No 154
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=97.47 E-value=0.0004 Score=84.99 Aligned_cols=123 Identities=20% Similarity=0.232 Sum_probs=99.4
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecc---
Q 000139 1066 GKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTR--- 1142 (2062)
Q Consensus 1066 GKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTr--- 1142 (2062)
-|+-.|..||+--.-.| |.|||.+-..+.--|.-||...|++-|.|.|..+..-|..++++||. +-..|+|. |+
T Consensus 253 DKflllyallKL~LI~g-KsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNk-G~YdivIA-tD~s~ 329 (569)
T KOG0346|consen 253 DKFLLLYALLKLRLIRG-KSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNK-GLYDIVIA-TDDSA 329 (569)
T ss_pred hhHHHHHHHHHHHHhcC-ceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhC-cceeEEEE-ccCcc
Confidence 46766766665433344 99999999999999999999999999999999999999999999996 34445444 44
Q ss_pred -----------------------cc---------ccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEE
Q 000139 1143 -----------------------SG---------GVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLI 1190 (2062)
Q Consensus 1143 -----------------------AG---------G~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLI 1190 (2062)
++ +.||++...+.||.||.|-++.....|+||..|-|.+-.+ .-||
T Consensus 330 ~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~Gta--lSfv 407 (569)
T KOG0346|consen 330 DGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTA--LSFV 407 (569)
T ss_pred chhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCce--EEEe
Confidence 22 4799999999999999999999999999999998765544 4455
Q ss_pred eCC
Q 000139 1191 SES 1193 (2062)
Q Consensus 1191 se~ 1193 (2062)
+..
T Consensus 408 ~P~ 410 (569)
T KOG0346|consen 408 SPK 410 (569)
T ss_pred cch
Confidence 553
No 155
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=97.46 E-value=0.00011 Score=62.94 Aligned_cols=43 Identities=40% Similarity=0.815 Sum_probs=39.4
Q ss_pred CCChhhhHHHHHHHHhcC-CCchhHHHHhhccccCccccccccCChhhHHHHHHH
Q 000139 1662 VWLPQEDAILCAVVHEYG-PNWSLVSDILYGMTASGYYRGRYRHPVHCCERFREL 1715 (2062)
Q Consensus 1662 ~w~~~ed~~l~~~v~~~g-~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~ 1715 (2062)
+|+++||..|..+|..|| .+|..|+..| + .|++.+|+.||..+
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~---~--------~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKEL---P--------GRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHc---C--------CCCHHHHHHHHHHh
Confidence 699999999999999999 7999999988 2 29999999999876
No 156
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=97.43 E-value=0.00091 Score=92.23 Aligned_cols=90 Identities=20% Similarity=0.335 Sum_probs=62.4
Q ss_pred HHHHHHHHHh-hhCCCeEEEEeCchHHHHHHHHHHHH----cCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000139 1069 QELAILLRKL-KSDGHRALIFTQMTKMLDILEEFISL----YGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1143 (2062)
Q Consensus 1069 q~L~~LLrkL-ks~GhKVLIFSQ~t~mLDILe~~L~~----~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrA 1143 (2062)
+.+...|.++ ...+.++|||.....+++.+...|.. .++.. +..... ..|..++++|... ... +|+.|.+
T Consensus 660 ~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~--l~q~~~-~~r~~ll~~F~~~-~~~-iLlgt~s 734 (850)
T TIGR01407 660 QEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYEV--LAQGIN-GSRAKIKKRFNNG-EKA-ILLGTSS 734 (850)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCceE--EecCCC-ccHHHHHHHHHhC-CCe-EEEEcce
Confidence 3455555554 33456899999999999999998865 34443 333322 4799999999863 333 4667899
Q ss_pred cccccCcccCC--EEEEecCCC
Q 000139 1144 GGVGINLVGAD--TVIFYDSDW 1163 (2062)
Q Consensus 1144 GG~GLNLT~AD--tVIfyD~dW 1163 (2062)
..+||++.+-. .||+.-.|+
T Consensus 735 f~EGVD~~g~~l~~viI~~LPf 756 (850)
T TIGR01407 735 FWEGVDFPGNGLVCLVIPRLPF 756 (850)
T ss_pred eecccccCCCceEEEEEeCCCC
Confidence 99999998844 567766555
No 157
>PLN03212 Transcription repressor MYB5; Provisional
Probab=97.35 E-value=0.00026 Score=81.92 Aligned_cols=60 Identities=12% Similarity=0.181 Sum_probs=52.2
Q ss_pred CCCCCChhhhHHHHHHHHhcCCCchhHHHHhhccccCccccccccCChhhHHHHHHHHHHHHHhCCCCCcc
Q 000139 1659 SPDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVPDNSIN 1729 (2062)
Q Consensus 1659 ~~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~~~~~~ 1729 (2062)
..++||.+||++|..+|..||..|..|+..| -.|+..+|+.||..++.+......-++..
T Consensus 77 ~kgpWT~EED~lLlel~~~~GnKWs~IAk~L-----------pGRTDnqIKNRWns~LrK~l~r~~i~p~~ 136 (249)
T PLN03212 77 KRGGITSDEEDLILRLHRLLGNRWSLIAGRI-----------PGRTDNEIKNYWNTHLRKKLLRQGIDPQT 136 (249)
T ss_pred ccCCCChHHHHHHHHHHHhccccHHHHHhhc-----------CCCCHHHHHHHHHHHHhHHHHhcCCCCCC
Confidence 3799999999999999999999999999987 34999999999999999987765554443
No 158
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=97.29 E-value=0.00046 Score=82.33 Aligned_cols=59 Identities=32% Similarity=0.530 Sum_probs=48.1
Q ss_pred CCCccccCCCC--CCCccchhchHHHHhhhchHHHHHHHHHhhcCCCCCHHHHHhhhcccc
Q 000139 206 DIDEEYDVHSE--DESEDDEHTIEEDEALITEEERKEELEALHNETDIPLQELLKRYAVDK 264 (2062)
Q Consensus 206 ~~Ddef~~~~~--ee~eDDEeTIEeeE~~~~~~d~~~ELe~L~~E~ElPLEELL~~y~~~~ 264 (2062)
..|.+|.+..+ ..+.|||.|.+++|....+.....||+.|++|++||+++||..|.+.-
T Consensus 17 sdDh~f~p~admlv~dfdde~tleEeel~d~e~~~e~ei~~l~re~dmp~~ella~yg~~a 77 (445)
T KOG4329|consen 17 SDDHTFEPTADMLVNDFDDEATLEEEELADMEAKAEDEIETLRRESDMPIRELLALYGYTA 77 (445)
T ss_pred cccccccccHHHHhcchhhhccccHhhccCccchhhHHHHHHHHhcCCcHHHHHHHhcccc
Confidence 35777775544 456899999997777666666789999999999999999999998763
No 159
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=97.24 E-value=0.00074 Score=81.98 Aligned_cols=94 Identities=22% Similarity=0.375 Sum_probs=82.5
Q ss_pred CCeEEEEeCchHHHHHHHHHHHHcC---CcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEEE
Q 000139 1082 GHRALIFTQMTKMLDILEEFISLYG---YTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIF 1158 (2062)
Q Consensus 1082 GhKVLIFSQ~t~mLDILe~~L~~~G---i~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIf 1158 (2062)
-.|+|||+.-..-.|-|+++++..| |.++-++|..++.+|.+-+++|.. .++ -||+.|.++..||++++.-.+|.
T Consensus 505 mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk-~dv-kflictdvaargldi~g~p~~in 582 (725)
T KOG0349|consen 505 MDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKK-FDV-KFLICTDVAARGLDITGLPFMIN 582 (725)
T ss_pred cCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhh-cCe-EEEEEehhhhccccccCCceEEE
Confidence 4699999999999999999998765 678889999999999999999986 334 36888999999999999999999
Q ss_pred ecCCCChhhHHHHHHhhhc
Q 000139 1159 YDSDWNPAMDQQAQDRCHR 1177 (2062)
Q Consensus 1159 yD~dWNPa~d~QA~gRahR 1177 (2062)
+-.+-..+....+|||++|
T Consensus 583 vtlpd~k~nyvhrigrvgr 601 (725)
T KOG0349|consen 583 VTLPDDKTNYVHRIGRVGR 601 (725)
T ss_pred EecCcccchhhhhhhccch
Confidence 9998888888888877766
No 160
>PLN03091 hypothetical protein; Provisional
Probab=97.14 E-value=0.00057 Score=84.38 Aligned_cols=55 Identities=13% Similarity=0.209 Sum_probs=49.2
Q ss_pred CCCCCChhhhHHHHHHHHhcCCCchhHHHHhhccccCccccccccCChhhHHHHHHHHHHHHHhCC
Q 000139 1659 SPDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVP 1724 (2062)
Q Consensus 1659 ~~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~ 1724 (2062)
.+++|+++||++|..+|+.||..|..|+..| ..|...+||.||..++.+......
T Consensus 66 kKgpWT~EED~lLLeL~k~~GnKWskIAk~L-----------PGRTDnqIKNRWnslLKKklr~~~ 120 (459)
T PLN03091 66 KRGTFSQQEENLIIELHAVLGNRWSQIAAQL-----------PGRTDNEIKNLWNSCLKKKLRQRG 120 (459)
T ss_pred cCCCCCHHHHHHHHHHHHHhCcchHHHHHhc-----------CCCCHHHHHHHHHHHHHHHHHHcC
Confidence 3789999999999999999999999999988 449999999999999999766443
No 161
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.14 E-value=0.0025 Score=84.27 Aligned_cols=78 Identities=22% Similarity=0.167 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHC-----CCCeE
Q 000139 529 QHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWC-----PAFKI 602 (2062)
Q Consensus 529 Q~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw~-----P~lkV 602 (2062)
|.+-+.++...+..+...|+-..+|.|||+..+.-+...... ...+++||++|+ .+..|+..++.... ..+++
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~-~~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~ 80 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKE-RPDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQA 80 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHh-ccCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeE
Confidence 777788888888877777888899999998776554433321 223689999999 47788888776543 24555
Q ss_pred EEEeC
Q 000139 603 LTYFG 607 (2062)
Q Consensus 603 l~y~G 607 (2062)
.+..|
T Consensus 81 ~~lkG 85 (636)
T TIGR03117 81 GFFPG 85 (636)
T ss_pred EEEEC
Confidence 55444
No 162
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.13 E-value=0.0056 Score=70.25 Aligned_cols=154 Identities=23% Similarity=0.234 Sum_probs=82.6
Q ss_pred CCcHHHHHHHHHHHHHhhcCCc-EEEEcCCCChHHHHHHHHHHHHH-----HhcCCCCcEEEEecCC-cHHHHHHHHHH-
Q 000139 524 PLREYQHIGLDWLVTMYEKRLN-GILADEMGLGKTIMTIAMLAHLA-----CEKGIWGPHLIVVPTS-VMLNWETEFLK- 595 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~g-GILADEMGLGKTIQaIALLa~L~-----~~~g~~Gp~LIVvPtS-LL~QW~~Efkk- 595 (2062)
.|-+.|..++..++. ..+ .++.-..|.|||.+..+++..+. ......+++||++|+. .+.+-...|.+
T Consensus 1 ~ln~~Q~~Ai~~~~~----~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~~ 76 (236)
T PF13086_consen 1 KLNESQREAIQSALS----SNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKKL 76 (236)
T ss_dssp ---HHHHHHHHHHCT----SSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHc----CCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHhh
Confidence 378999999975544 444 78888999999988777777773 2245567999999985 56666666655
Q ss_pred -----HCCCCeEEEEeCCh-h-h---HHhh----hhccC------------------------------C----------
Q 000139 596 -----WCPAFKILTYFGSA-K-E---RKFK----RQGWL------------------------------K---------- 621 (2062)
Q Consensus 596 -----w~P~lkVl~y~Gs~-k-e---rk~~----r~gw~------------------------------k---------- 621 (2062)
-.+..+++.+.... . . .... ...+. .
T Consensus 77 ~~~~~~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (236)
T PF13086_consen 77 LDEDGKVYKPKIIRLGSEEEKIHEDLQKFSLESKLEQRFESKLKRLREQLEELQQKIRLSELKEEKKKLKKSIKRLRKEL 156 (236)
T ss_dssp -------TT--EEE---GGTTS--TTGGGBHHHHHHTTT-----------THHHCHHHHHHHHHHHCCSSCHHHHHHHHH
T ss_pred ccccccccccchhhhcccccccccccccccccccccccccccchhhhHHHHHHHHhhhhhhhhhhhhhcchhcccccccc
Confidence 12334444443332 0 0 0000 00000 0
Q ss_pred -----------CCCceEEEEehhhhhhchhhhhcc--CeeEEEEcCccccCChhhHHHHHHHcccCceEEEEeccCCCC
Q 000139 622 -----------PNSFHVCITTYRLIIQDSKVFKRK--KWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQN 687 (2062)
Q Consensus 622 -----------~~~fdVVITSYe~l~~d~~~L~r~--~W~lVILDEAH~IKN~~Sk~~qaL~~L~a~~RLLLTGTPLQN 687 (2062)
...++||++|...+.. ..+... .|++||||||=.+.-... .-.+ ..+..+++|.|=|-|-
T Consensus 157 ~~~~~~~~~~~l~~~~vi~~T~~~~~~--~~~~~~~~~~d~vIvDEAsq~~e~~~--l~~l--~~~~~~~vlvGD~~QL 229 (236)
T PF13086_consen 157 EKIREELRRFILKEADVIFTTLSSAAS--PFLSNFKEKFDVVIVDEASQITEPEA--LIPL--SRAPKRIVLVGDPKQL 229 (236)
T ss_dssp HHHHHHHHHHHHHT-SEEEEETCGGG---CCGTT-----SEEEETTGGGS-HHHH--HHHH--TTTBSEEEEEE-TTS-
T ss_pred cccccchhhhhcccccccccccccchh--hHhhhhcccCCEEEEeCCCCcchHHH--HHHH--HHhCCEEEEECChhhc
Confidence 0135788888877732 234444 799999999987753221 1122 2344889999988773
No 163
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=97.07 E-value=0.003 Score=86.08 Aligned_cols=158 Identities=16% Similarity=0.264 Sum_probs=102.2
Q ss_pred CCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC-cHHHHHHHHHHHCCC-
Q 000139 522 KFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS-VMLNWETEFLKWCPA- 599 (2062)
Q Consensus 522 k~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtS-LL~QW~~Efkkw~P~- 599 (2062)
.+.|-++|++++.-|-. +.+.+++..+|.|||+++-.+++.... .|. .+.-..|.- +..|=-++|..-+..
T Consensus 117 ~F~LD~fQ~~a~~~Ler----~esVlV~ApTssGKTvVaeyAi~~al~-~~q--rviYTsPIKALsNQKyrdl~~~fgdv 189 (1041)
T COG4581 117 PFELDPFQQEAIAILER----GESVLVCAPTSSGKTVVAEYAIALALR-DGQ--RVIYTSPIKALSNQKYRDLLAKFGDV 189 (1041)
T ss_pred CCCcCHHHHHHHHHHhC----CCcEEEEccCCCCcchHHHHHHHHHHH-cCC--ceEeccchhhhhhhHHHHHHHHhhhh
Confidence 46799999999976644 888999999999999999877776544 333 478888974 555556666544332
Q ss_pred -CeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhch--hhhhccCeeEEEEcCccccCCh-hhHHHHHHHcc-c-
Q 000139 600 -FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDS--KVFKRKKWKYLILDEAHLIKNW-KSQRWQTLLNF-N- 673 (2062)
Q Consensus 600 -lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~--~~L~r~~W~lVILDEAH~IKN~-~Sk~~qaL~~L-~- 673 (2062)
-.+-++.|... ..++...+|.|| +.+++-. ..........||+||.|+|... ..-.|..+.-+ .
T Consensus 190 ~~~vGL~TGDv~---------IN~~A~clvMTT-EILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~ 259 (1041)
T COG4581 190 ADMVGLMTGDVS---------INPDAPCLVMTT-EILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPD 259 (1041)
T ss_pred hhhccceeccee---------eCCCCceEEeeH-HHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCC
Confidence 22345555432 122333344444 6665431 1122234577999999999764 34456555433 3
Q ss_pred CceEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcC
Q 000139 674 SKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCN 716 (2062)
Q Consensus 674 a~~RLLLTGTPLQNsL~ELwSLL~FL~P~iF~s~~eFkewFsn 716 (2062)
.-+.++||||- ++..+|..|++.
T Consensus 260 ~v~~v~LSATv--------------------~N~~EF~~Wi~~ 282 (1041)
T COG4581 260 HVRFVFLSATV--------------------PNAEEFAEWIQR 282 (1041)
T ss_pred CCcEEEEeCCC--------------------CCHHHHHHHHHh
Confidence 33889999992 345788899863
No 164
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.96 E-value=0.0027 Score=86.08 Aligned_cols=72 Identities=21% Similarity=0.116 Sum_probs=58.6
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHH
Q 000139 524 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLK 595 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkk 595 (2062)
.+||.|++-..-+......+.+++|--.+|.|||+.+|+.........+...++++.+.+ +-+.|-..|+++
T Consensus 10 ~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 10 KIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 469999999999999999999999999999999998887666554444433466777777 468889999988
No 165
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=96.93 E-value=0.0028 Score=79.84 Aligned_cols=109 Identities=23% Similarity=0.300 Sum_probs=82.3
Q ss_pred hCCCeEEEEeCchHHHHHHHHHHHHcCCc-EEEecCCCCHHHHHHHHHHHhc-CCCceEEEEeccccccccCcccCCEEE
Q 000139 1080 SDGHRALIFTQMTKMLDILEEFISLYGYT-YMRLDGSTQPEERQTLMQRFNT-NPKIFLFILSTRSGGVGINLVGADTVI 1157 (2062)
Q Consensus 1080 s~GhKVLIFSQ~t~mLDILe~~L~~~Gi~-y~RLDGsTs~eqRq~lmerFN~-D~~IfVfLLSTrAGG~GLNLT~ADtVI 1157 (2062)
..|.-|+-||.- -+-.+...+..+|.. ++.|+|+.+++.|-+....||. +..+.| |+.|+|.|.|||| +.++||
T Consensus 356 k~GDCvV~FSkk--~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dv-lVAsDAIGMGLNL-~IrRii 431 (700)
T KOG0953|consen 356 KPGDCVVAFSKK--DIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDV-LVASDAIGMGLNL-NIRRII 431 (700)
T ss_pred CCCCeEEEeehh--hHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccce-EEeeccccccccc-ceeEEE
Confidence 357888889863 333345556666655 9999999999999999999997 456666 5677999999998 578999
Q ss_pred EecCC---------CChhhHHHHHHhhhccCCcCc-EEEEEEEeC
Q 000139 1158 FYDSD---------WNPAMDQQAQDRCHRIGQTRE-VHIYRLISE 1192 (2062)
Q Consensus 1158 fyD~d---------WNPa~d~QA~gRahRIGQTRd-V~VYRLIse 1192 (2062)
||+.- -.-....|--||++|.|..-+ -.|.-|-.+
T Consensus 432 F~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~e 476 (700)
T KOG0953|consen 432 FYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSE 476 (700)
T ss_pred EeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeHh
Confidence 99974 344667899999999987655 344444443
No 166
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=96.90 E-value=0.0013 Score=84.48 Aligned_cols=251 Identities=20% Similarity=0.232 Sum_probs=141.0
Q ss_pred cCCCCCCccccccccccCCCCCCCCCcHHHHHHHHHHHHHhhc------CCcEEEEcCCCChHHHHHHHHHHHHHHhcCC
Q 000139 500 SAQPTGITFSTTQVRTKFPFLLKFPLREYQHIGLDWLVTMYEK------RLNGILADEMGLGKTIMTIAMLAHLACEKGI 573 (2062)
Q Consensus 500 s~qP~g~~~~tt~vkt~vP~lLk~~LRpYQ~~GL~WLv~l~~~------~~gGILADEMGLGKTIQaIALLa~L~~~~g~ 573 (2062)
+..|+.++.. ..+|..-.+-|---|+++|-|..+.++. +-|-+|+|-.|.||-.++..+|..... +|.
T Consensus 245 SV~ppdi~Yq-----lalP~i~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyL-kGR 318 (1300)
T KOG1513|consen 245 SVEPPDITYQ-----LALPSIDSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYL-KGR 318 (1300)
T ss_pred ccCCCCceEE-----EecccCcccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhh-ccc
Confidence 4555554332 3456655688999999999999887764 235688999999987666555554432 455
Q ss_pred CCcEEEEecCCcHHHHHHHHHHHC-CCCeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchh--------hhhc
Q 000139 574 WGPHLIVVPTSVMLNWETEFLKWC-PAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK--------VFKR 644 (2062)
Q Consensus 574 ~Gp~LIVvPtSLL~QW~~Efkkw~-P~lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~--------~L~r 644 (2062)
.+...|-|..-|-..-++.+.... +++.|..+ ++-.-..+...-...-+--|+..||..++-... .|+.
T Consensus 319 KrAlW~SVSsDLKfDAERDL~DigA~~I~V~al--nK~KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQ 396 (1300)
T KOG1513|consen 319 KRALWFSVSSDLKFDAERDLRDIGATGIAVHAL--NKFKYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQ 396 (1300)
T ss_pred ceeEEEEeccccccchhhchhhcCCCCccceeh--hhcccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHH
Confidence 555556667777777777777643 23322222 111110000000111234599999998865422 1221
Q ss_pred -cCe------eEEEEcCccccCC-------hhhHHHHHHHcc----cCceEEEEeccCCCCChHHHHHHHHHhCCCC---
Q 000139 645 -KKW------KYLILDEAHLIKN-------WKSQRWQTLLNF----NSKRRILLTGTPLQNDLMELWSLMHFLMPHI--- 703 (2062)
Q Consensus 645 -~~W------~lVILDEAH~IKN-------~~Sk~~qaL~~L----~a~~RLLLTGTPLQNsL~ELwSLL~FL~P~i--- 703 (2062)
..| .+||+||||+.|| ..++.-++++.| ..-+.+--|||--. |=-+|.....-++
T Consensus 397 llqW~Ge~feGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGAs----EPrNMaYM~RLGlWGe 472 (1300)
T KOG1513|consen 397 LLQWCGEDFEGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGAS----EPRNMAYMVRLGLWGE 472 (1300)
T ss_pred HHHHhhhccceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCCC----CcchhhhhhhhccccC
Confidence 123 5899999999999 245666666555 45577778888532 2222333333344
Q ss_pred ---CCChHHHHHHhcCCCCCcccccccccHHHHHHHHHhhhhhhhhhhhhhHhhcCC--CceeEEEEecCCHHHHHHHHH
Q 000139 704 ---FQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRRLKRDVEKQLP--MKQEHVIYCRLSKRQRNLYED 778 (2062)
Q Consensus 704 ---F~s~~eFkewFsnPisg~~eg~~~~n~~~i~rLhkvLrpFmLRRtK~DVekqLP--~K~EhVV~c~LSkrQR~LYdd 778 (2062)
|..+.+|...... ......+++ .+-.-+|...|-| ||. .-...+-.++||+.-+..|+.
T Consensus 473 gtaf~eF~eFi~AvEk--------RGvGAMEIV-AMDMK~rGmYiAR-------QLSFkgVsFrieEv~ls~eF~k~Yn~ 536 (1300)
T KOG1513|consen 473 GTAFPEFEEFIHAVEK--------RGVGAMEIV-AMDMKLRGMYIAR-------QLSFKGVSFRIEEVPLSKEFRKVYNR 536 (1300)
T ss_pred CCcCccHHHHHHHHHh--------cCCceeeee-ehhhhhhhhhhhh-------hccccCceEEEEecccCHHHHHHHHH
Confidence 4444444432221 111111122 1222344443333 333 335778889999999999984
No 167
>PRK10536 hypothetical protein; Provisional
Probab=96.87 E-value=0.0031 Score=74.84 Aligned_cols=146 Identities=22% Similarity=0.191 Sum_probs=85.6
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCC--
Q 000139 523 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAF-- 600 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw~P~l-- 600 (2062)
.++-..|...+.||.. +...++.-+.|.|||+.++++....... +....++|+=|.--. .+.-.|.|+-
T Consensus 58 ~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~-~~~~kIiI~RP~v~~----ge~LGfLPG~~~ 128 (262)
T PRK10536 58 LARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIH-KDVDRIIVTRPVLQA----DEDLGFLPGDIA 128 (262)
T ss_pred cCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhc-CCeeEEEEeCCCCCc----hhhhCcCCCCHH
Confidence 3467899998888854 4577888999999999999988865432 333344444343222 2333444431
Q ss_pred -eEEEE-----------eCChhhHHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHH
Q 000139 601 -KILTY-----------FGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQT 668 (2062)
Q Consensus 601 -kVl~y-----------~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qa 668 (2062)
|+..| .|......... ...-.|.|.+...++-. .+.-.+|||||||++.- .+....
T Consensus 129 eK~~p~~~pi~D~L~~~~~~~~~~~~~~-----~~~~~Iei~~l~ymRGr-----tl~~~~vIvDEaqn~~~--~~~k~~ 196 (262)
T PRK10536 129 EKFAPYFRPVYDVLVRRLGASFMQYCLR-----PEIGKVEIAPFAYMRGR-----TFENAVVILDEAQNVTA--AQMKMF 196 (262)
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHH-----hccCcEEEecHHHhcCC-----cccCCEEEEechhcCCH--HHHHHH
Confidence 11111 11111111100 01122444444433221 12348999999999864 455556
Q ss_pred HHcccCceEEEEeccCCCCCh
Q 000139 669 LLNFNSKRRILLTGTPLQNDL 689 (2062)
Q Consensus 669 L~~L~a~~RLLLTGTPLQNsL 689 (2062)
+.++....+++++|-|-|.++
T Consensus 197 ltR~g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 197 LTRLGENVTVIVNGDITQCDL 217 (262)
T ss_pred HhhcCCCCEEEEeCChhhccC
Confidence 677788899999999988764
No 168
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.86 E-value=0.0025 Score=73.63 Aligned_cols=143 Identities=24% Similarity=0.288 Sum_probs=68.4
Q ss_pred CcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCC---e
Q 000139 525 LREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAF---K 601 (2062)
Q Consensus 525 LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw~P~l---k 601 (2062)
+-.+|...++-|.. ....++.-..|.|||+.|++..+++... +...+++|+-|..-+..+. -|.|+- +
T Consensus 5 ~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~-g~~~kiii~Rp~v~~~~~l----GflpG~~~eK 75 (205)
T PF02562_consen 5 KNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKE-GEYDKIIITRPPVEAGEDL----GFLPGDLEEK 75 (205)
T ss_dssp -SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHT-TS-SEEEEEE-S--TT--------SS-------
T ss_pred CCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCcEEEEEecCCCCcccc----ccCCCCHHHH
Confidence 56899999988873 4567788889999999999998888765 6667777777765332211 122210 1
Q ss_pred EEEEe-----------CChhhHHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHH
Q 000139 602 ILTYF-----------GSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLL 670 (2062)
Q Consensus 602 Vl~y~-----------Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~ 670 (2062)
.-.|. +.......... ..|-+.+...++- +.+.+.+||+||||++.. ...-..+.
T Consensus 76 ~~p~~~p~~d~l~~~~~~~~~~~~~~~-------~~Ie~~~~~~iRG-----rt~~~~~iIvDEaQN~t~--~~~k~ilT 141 (205)
T PF02562_consen 76 MEPYLRPIYDALEELFGKEKLEELIQN-------GKIEIEPLAFIRG-----RTFDNAFIIVDEAQNLTP--EELKMILT 141 (205)
T ss_dssp --TTTHHHHHHHTTTS-TTCHHHHHHT-------TSEEEEEGGGGTT-------B-SEEEEE-SGGG--H--HHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhChHhHHHHhhc-------CeEEEEehhhhcC-----ccccceEEEEecccCCCH--HHHHHHHc
Confidence 11111 11111111111 1233333333221 123468999999998853 33334456
Q ss_pred cccCceEEEEeccCCCCChH
Q 000139 671 NFNSKRRILLTGTPLQNDLM 690 (2062)
Q Consensus 671 ~L~a~~RLLLTGTPLQNsL~ 690 (2062)
++....++.++|-|.|.++.
T Consensus 142 R~g~~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 142 RIGEGSKIIITGDPSQIDLP 161 (205)
T ss_dssp TB-TT-EEEEEE--------
T ss_pred ccCCCcEEEEecCceeecCC
Confidence 67777999999999987654
No 169
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=96.86 E-value=0.11 Score=69.46 Aligned_cols=160 Identities=19% Similarity=0.236 Sum_probs=105.3
Q ss_pred cHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHH-HH-CCCCeE
Q 000139 526 REYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFL-KW-CPAFKI 602 (2062)
Q Consensus 526 RpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efk-kw-~P~lkV 602 (2062)
-.+|..-++-+ .++...+|...+-.|||...--++-...+. ...+-++-|+|+ +++.|=...+. +| ++.+..
T Consensus 513 d~WQ~elLDsv----Dr~eSavIVAPTSaGKTfisfY~iEKVLRe-sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~r 587 (1330)
T KOG0949|consen 513 DEWQRELLDSV----DRNESAVIVAPTSAGKTFISFYAIEKVLRE-SDSDVVIYVAPTKALVNQVSANVYARFDTKTFLR 587 (1330)
T ss_pred cHHHHHHhhhh----hcccceEEEeeccCCceeccHHHHHHHHhh-cCCCEEEEecchHHHhhhhhHHHHHhhccCcccc
Confidence 35666655432 346667888889999999988887777654 455788999998 57777666664 44 343322
Q ss_pred E-EEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchh-----hhhccCeeEEEEcCccccCCh-hhHHHHHHHcccCc
Q 000139 603 L-TYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK-----VFKRKKWKYLILDEAHLIKNW-KSQRWQTLLNFNSK 675 (2062)
Q Consensus 603 l-~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~-----~L~r~~W~lVILDEAH~IKN~-~Sk~~qaL~~L~a~ 675 (2062)
. ...|.-. +.--..+-.+.|.||-.+.+..-.- .-.-.+..|||+||.|.|.|. .+..|..+..+-.-
T Consensus 588 g~sl~g~lt-----qEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~C 662 (1330)
T KOG0949|consen 588 GVSLLGDLT-----QEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIPC 662 (1330)
T ss_pred chhhHhhhh-----HHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhcCC
Confidence 2 2222221 1111123378899999877643211 111135689999999999986 57788888887777
Q ss_pred eEEEEeccCCCCChHHHHHHHH
Q 000139 676 RRILLTGTPLQNDLMELWSLMH 697 (2062)
Q Consensus 676 ~RLLLTGTPLQNsL~ELwSLL~ 697 (2062)
--|+|||| ++++..+...++
T Consensus 663 P~L~LSAT--igN~~l~qkWln 682 (1330)
T KOG0949|consen 663 PFLVLSAT--IGNPNLFQKWLN 682 (1330)
T ss_pred CeeEEecc--cCCHHHHHHHHH
Confidence 78999999 567777666555
No 170
>PF13892 DBINO: DNA-binding domain
Probab=96.80 E-value=0.016 Score=62.52 Aligned_cols=104 Identities=24% Similarity=0.376 Sum_probs=74.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH---hhhhh
Q 000139 41 EMVWLSKDFESERKWKLAQAKKVALRASKGMLDQASRGEKKLKEEEQRLRKVAVNISKDVKKFWMKIEKLVL---YKHQM 117 (2062)
Q Consensus 41 Em~wma~df~~Er~wk~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ia~~iak~v~~FW~~iek~v~---~K~Q~ 117 (2062)
+.-=...-|.+=+.=+...|+++|..|++.......+..+..++-+.|. ..+++++..||...+|... =+.+-
T Consensus 18 di~K~~r~~~~~~~~~~~~~kk~a~~c~re~rr~~~rs~k~~Kd~~~Ra----krl~rEm~~fwkk~eke~~~~~k~~eK 93 (139)
T PF13892_consen 18 DIPKVHRIKQQNHQNRQSNAKKIAQLCAREARRKQSRSQKNMKDTQLRA----KRLMREMLSFWKKNEKEERELRKKAEK 93 (139)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455566667778899999999999999988888888777766664 5567899999999999773 11222
Q ss_pred hH-------HHHHHHHHh--hhhhHHhchhhhhHHHHHhhh
Q 000139 118 EV-------DVRKKKALD--KQLEFLLGQTERYSSMLAENL 149 (2062)
Q Consensus 118 ~l-------eekrKkALd--~~L~fivgqTEkys~~l~~~l 149 (2062)
+. +|.+ .+.+ .-|+||++|||=||..+...+
T Consensus 94 E~~e~~k~~~E~~-e~~rq~~rl~fLl~QTElfsHF~~~k~ 133 (139)
T PF13892_consen 94 EALEQKKKEEEKR-EAKRQQRRLNFLLTQTELFSHFMQNKA 133 (139)
T ss_pred HHHHhhhccHHHH-HHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 21 2222 2222 468999999999998875544
No 171
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.67 E-value=0.0021 Score=78.63 Aligned_cols=124 Identities=19% Similarity=0.242 Sum_probs=107.0
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccc
Q 000139 1066 GKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGG 1145 (2062)
Q Consensus 1066 GKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG 1145 (2062)
.|..+|..+|..... ..+.+||.--.....++...|+..|+....++|++...-|..-+.+|+. ++. -+|++|+.+.
T Consensus 246 ~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~-~k~-~~lvvTdvaa 322 (529)
T KOG0337|consen 246 EKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRG-RKT-SILVVTDVAA 322 (529)
T ss_pred HHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccC-Ccc-ceEEEehhhh
Confidence 577788888876544 4589999999999999999999999999999999999999999999986 333 3578899999
Q ss_pred cccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCC
Q 000139 1146 VGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISEST 1194 (2062)
Q Consensus 1146 ~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~T 1194 (2062)
.|+++..-++||.||.+-.+.....++||+.|-|.+ -.-|-||+..-
T Consensus 323 RG~diplldnvinyd~p~~~klFvhRVgr~aragrt--g~aYs~V~~~~ 369 (529)
T KOG0337|consen 323 RGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRT--GRAYSLVASTD 369 (529)
T ss_pred ccCCCccccccccccCCCCCceEEEEecchhhcccc--ceEEEEEeccc
Confidence 999999999999999999999999999999998854 46677887653
No 172
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=96.63 E-value=0.47 Score=64.64 Aligned_cols=83 Identities=14% Similarity=0.199 Sum_probs=68.0
Q ss_pred cchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCC-CCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000139 1065 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGS-TQPEERQTLMQRFNTNPKIFLFILSTRS 1143 (2062)
Q Consensus 1065 SGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGs-Ts~eqRq~lmerFN~D~~IfVfLLSTrA 1143 (2062)
..|+.++..-+.++...|.-|||-|..+..-..|...|...|+.+-.|+.. ...++-..++..= ++.--+.++|..
T Consensus 422 ~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~A---G~~GaVTIATNM 498 (939)
T PRK12902 422 IAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQA---GRKGAVTIATNM 498 (939)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHhc---CCCCcEEEeccC
Confidence 589999999999999999999999999999999999999999999999886 3434445566542 333344778999
Q ss_pred cccccCc
Q 000139 1144 GGVGINL 1150 (2062)
Q Consensus 1144 GG~GLNL 1150 (2062)
+|.|-++
T Consensus 499 AGRGTDI 505 (939)
T PRK12902 499 AGRGTDI 505 (939)
T ss_pred CCCCcCE
Confidence 9999775
No 173
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=96.25 E-value=0.016 Score=76.51 Aligned_cols=134 Identities=18% Similarity=0.186 Sum_probs=89.9
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHH-----H---HHHHH-HHHCCC--CeEEEEeCChh
Q 000139 542 KRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVML-----N---WETEF-LKWCPA--FKILTYFGSAK 610 (2062)
Q Consensus 542 ~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~-----Q---W~~Ef-kkw~P~--lkVl~y~Gs~k 610 (2062)
...|.=+-.|+|.|||.+-+-+|..|....|. -+++||||+-.+. + -..+| +.++.+ +..++|.....
T Consensus 73 ~~lNiDI~METGTGKTy~YlrtmfeLhk~YG~-~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~~ 151 (985)
T COG3587 73 DKLNIDILMETGTGKTYTYLRTMFELHKKYGL-FKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDIE 151 (985)
T ss_pred CcceeeEEEecCCCceeeHHHHHHHHHHHhCc-eeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechHHH
Confidence 34566677899999999999999998876665 5899999984332 1 23344 444443 44455542222
Q ss_pred hHHhhhhccCCCCCceEEEEehhhhhhc---hhh---------------------hhccCeeEEEEcCccccCChhhHHH
Q 000139 611 ERKFKRQGWLKPNSFHVCITTYRLIIQD---SKV---------------------FKRKKWKYLILDEAHLIKNWKSQRW 666 (2062)
Q Consensus 611 erk~~r~gw~k~~~fdVVITSYe~l~~d---~~~---------------------L~r~~W~lVILDEAH~IKN~~Sk~~ 666 (2062)
... ....+...|+|.+.+.+.++ ... +... --.||+||-|++... .+.|
T Consensus 152 ~~~-----~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~-rPIvIvDEPh~f~~~-~k~~ 224 (985)
T COG3587 152 KFK-----FKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASM-RPIVIVDEPHRFLGD-DKTY 224 (985)
T ss_pred HHh-----hccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhc-CCEEEecChhhcccc-hHHH
Confidence 222 22335677888887777665 111 1111 236999999999865 7899
Q ss_pred HHHHcccCceEEEEecc
Q 000139 667 QTLLNFNSKRRILLTGT 683 (2062)
Q Consensus 667 qaL~~L~a~~RLLLTGT 683 (2062)
.++..++....|=..||
T Consensus 225 ~~i~~l~pl~ilRfgAT 241 (985)
T COG3587 225 GAIKQLNPLLILRFGAT 241 (985)
T ss_pred HHHHhhCceEEEEeccc
Confidence 99999999988888888
No 174
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=96.19 E-value=0.029 Score=67.45 Aligned_cols=153 Identities=18% Similarity=0.207 Sum_probs=88.5
Q ss_pred CCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHH----HHHHHHHHHC
Q 000139 522 KFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVML----NWETEFLKWC 597 (2062)
Q Consensus 522 k~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~----QW~~Efkkw~ 597 (2062)
...+++-|+.|+--| ..|-|.=-.+|=|||+++. +++.+..-.| .++-||+.+..+. +|...|-+++
T Consensus 75 g~~p~~vQll~~l~L------~~G~laEm~TGEGKTli~~-l~a~~~AL~G--~~V~vvT~NdyLA~RD~~~~~~~y~~L 145 (266)
T PF07517_consen 75 GLRPYDVQLLGALAL------HKGRLAEMKTGEGKTLIAA-LPAALNALQG--KGVHVVTSNDYLAKRDAEEMRPFYEFL 145 (266)
T ss_dssp S----HHHHHHHHHH------HTTSEEEESTTSHHHHHHH-HHHHHHHTTS--S-EEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCcccHHHHhhhhhc------ccceeEEecCCCCcHHHHH-HHHHHHHHhc--CCcEEEeccHHHhhccHHHHHHHHHHh
Confidence 455788888888544 2245888899999999885 4444444344 3566677665543 3888888887
Q ss_pred CCCeEEEEeCChh--hHHhhhhccCCCCCceEEEEehhhhhhch---------hhhhccCeeEEEEcCccccCC------
Q 000139 598 PAFKILTYFGSAK--ERKFKRQGWLKPNSFHVCITTYRLIIQDS---------KVFKRKKWKYLILDEAHLIKN------ 660 (2062)
Q Consensus 598 P~lkVl~y~Gs~k--erk~~r~gw~k~~~fdVVITSYe~l~~d~---------~~L~r~~W~lVILDEAH~IKN------ 660 (2062)
++.+-...+... .|+.. -..+|+-+|-..+..|. ......++.++||||+..+-=
T Consensus 146 -Glsv~~~~~~~~~~~r~~~-------Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~LiDea~~p 217 (266)
T PF07517_consen 146 -GLSVGIITSDMSSEERREA-------YAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSILIDEARTP 217 (266)
T ss_dssp -T--EEEEETTTEHHHHHHH-------HHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHTTTGCCSE
T ss_pred -hhccccCccccCHHHHHHH-------HhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEEEecCccc
Confidence 566655555432 22211 13468888877665541 112235789999999875410
Q ss_pred ------------------hhhHHHHHHHcccCceEEEEeccCCCCChHHHH
Q 000139 661 ------------------WKSQRWQTLLNFNSKRRILLTGTPLQNDLMELW 693 (2062)
Q Consensus 661 ------------------~~Sk~~qaL~~L~a~~RLLLTGTPLQNsL~ELw 693 (2062)
..+-.++.+++. -.+..+|||| ....-.|||
T Consensus 218 l~is~~Ke~~~i~~~~~t~a~is~q~~f~~-Y~~l~GmTGT-a~~~~~e~~ 266 (266)
T PF07517_consen 218 LIISGAKEGLKITPESLTLASISYQNFFRL-YPKLSGMTGT-AKTEAKEFW 266 (266)
T ss_dssp EEEEEHHTTS----SEEEEEEEEHHHHHTT-SSEEEEEESS-TGGGHHHHH
T ss_pred ccccccccCCccCCCCeEEEEeehHHHHHh-cchheeeCCC-ChhhHhhcC
Confidence 011223333333 3348899999 777777776
No 175
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=95.82 E-value=0.056 Score=75.55 Aligned_cols=97 Identities=21% Similarity=0.265 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhh-hCCCeEEEEeCchHHHHHHHHHHHHcCC--cEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccc
Q 000139 1068 LQELAILLRKLK-SDGHRALIFTQMTKMLDILEEFISLYGY--TYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSG 1144 (2062)
Q Consensus 1068 Lq~L~~LLrkLk-s~GhKVLIFSQ~t~mLDILe~~L~~~Gi--~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAG 1144 (2062)
...+...|..+. ..+.++|||...-+++..+...|..... .+..+.-+++...|..++++|....+ .+|+.+.+.
T Consensus 737 ~~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~--~iLlG~~sF 814 (928)
T PRK08074 737 IEEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDK--AILLGTSSF 814 (928)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCC--eEEEecCcc
Confidence 355666665554 3455788877777888888888864322 13333323222458999999986432 246678899
Q ss_pred ccccCcccC--CEEEEecCCC-Chh
Q 000139 1145 GVGINLVGA--DTVIFYDSDW-NPA 1166 (2062)
Q Consensus 1145 G~GLNLT~A--DtVIfyD~dW-NPa 1166 (2062)
.+||++.+. ..||+.=.|+ +|.
T Consensus 815 wEGVD~pg~~l~~viI~kLPF~~p~ 839 (928)
T PRK08074 815 WEGIDIPGDELSCLVIVRLPFAPPD 839 (928)
T ss_pred cCccccCCCceEEEEEecCCCCCCC
Confidence 999999884 7888888777 443
No 176
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=95.76 E-value=0.05 Score=74.92 Aligned_cols=89 Identities=16% Similarity=0.178 Sum_probs=60.2
Q ss_pred HHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccccccc
Q 000139 1069 QELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGI 1148 (2062)
Q Consensus 1069 q~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GL 1148 (2062)
..+...|..+...+.++|||...-++|..+...|....+.. ..-|... .|..++++|+...+ - +|+.|.+..+||
T Consensus 634 ~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~-~-vLlG~~sFwEGV 708 (820)
T PRK07246 634 EEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQ-Q-ILLGLGSFWEGV 708 (820)
T ss_pred HHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCC-e-EEEecchhhCCC
Confidence 34555555555556688888778888888888887654433 4555433 36779999987433 2 467789999999
Q ss_pred Cccc--CCEEEEecCC
Q 000139 1149 NLVG--ADTVIFYDSD 1162 (2062)
Q Consensus 1149 NLT~--ADtVIfyD~d 1162 (2062)
++.+ +..||+.=.|
T Consensus 709 D~p~~~~~~viI~kLP 724 (820)
T PRK07246 709 DFVQADRMIEVITRLP 724 (820)
T ss_pred CCCCCCeEEEEEecCC
Confidence 9964 5666666544
No 177
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.75 E-value=0.012 Score=61.94 Aligned_cols=115 Identities=21% Similarity=0.238 Sum_probs=61.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhc--CCCCc-EEEEecCCc-HHHHHHHHHHHCC-CCeEEEEeCChhhHHhhhh
Q 000139 543 RLNGILADEMGLGKTIMTIAMLAHLACEK--GIWGP-HLIVVPTSV-MLNWETEFLKWCP-AFKILTYFGSAKERKFKRQ 617 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIALLa~L~~~~--g~~Gp-~LIVvPtSL-L~QW~~Efkkw~P-~lkVl~y~Gs~kerk~~r~ 617 (2062)
+..+++.-+.|.|||..+-.++..+.... ....+ ..|-+|... ...+..++...+. .... +
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~----~---------- 69 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS----R---------- 69 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS----T----------
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc----c----------
Confidence 44567888999999998888877665421 00112 234445443 4555555543221 0000 0
Q ss_pred ccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHcc--cCceEEEEeccC
Q 000139 618 GWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNF--NSKRRILLTGTP 684 (2062)
Q Consensus 618 gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L--~a~~RLLLTGTP 684 (2062)
.+....+..-...+.+..-.+|||||+|++. +......++.+ .....++|+|||
T Consensus 70 -----------~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 70 -----------QTSDELRSLLIDALDRRRVVLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp -----------S-HHHHHHHHHHHHHHCTEEEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred -----------CCHHHHHHHHHHHHHhcCCeEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 0011111122233444445899999999993 24444445444 667899999999
No 178
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=95.61 E-value=0.045 Score=70.47 Aligned_cols=81 Identities=21% Similarity=0.343 Sum_probs=64.0
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCc-HHHHHHHHHHHCCCCe
Q 000139 523 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSV-MLNWETEFLKWCPAFK 601 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSL-L~QW~~Efkkw~P~lk 601 (2062)
-.|-.-|..+|...+. +.-.||--..|.|||++..+++.|+... ..||+||++|+.+ +.|-..-|.+- +++
T Consensus 409 pkLN~SQ~~AV~~VL~----rplsLIQGPPGTGKTvtsa~IVyhl~~~--~~~~VLvcApSNiAVDqLaeKIh~t--gLK 480 (935)
T KOG1802|consen 409 PKLNASQSNAVKHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ--HAGPVLVCAPSNIAVDQLAEKIHKT--GLK 480 (935)
T ss_pred hhhchHHHHHHHHHHc----CCceeeecCCCCCceehhHHHHHHHHHh--cCCceEEEcccchhHHHHHHHHHhc--Cce
Confidence 3578899999988876 4446888999999999999999998875 4589999999975 77777777773 588
Q ss_pred EEEEeCChhh
Q 000139 602 ILTYFGSAKE 611 (2062)
Q Consensus 602 Vl~y~Gs~ke 611 (2062)
|+......++
T Consensus 481 VvRl~aksRE 490 (935)
T KOG1802|consen 481 VVRLCAKSRE 490 (935)
T ss_pred Eeeeehhhhh
Confidence 8876654443
No 179
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=95.14 E-value=0.064 Score=71.57 Aligned_cols=140 Identities=18% Similarity=0.239 Sum_probs=93.2
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHH-HHHHHHHHCCCCe
Q 000139 523 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLN-WETEFLKWCPAFK 601 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~Q-W~~Efkkw~P~lk 601 (2062)
+.|-.+|+.++-.|. ++-..++|.-+-.|||++|=..|+.. ..++ .+++--.|--.+.| =-++|+.-+....
T Consensus 296 FelD~FQk~Ai~~le----rg~SVFVAAHTSAGKTvVAEYAiala-q~h~--TR~iYTSPIKALSNQKfRDFk~tF~Dvg 368 (1248)
T KOG0947|consen 296 FELDTFQKEAIYHLE----RGDSVFVAAHTSAGKTVVAEYAIALA-QKHM--TRTIYTSPIKALSNQKFRDFKETFGDVG 368 (1248)
T ss_pred CCccHHHHHHHHHHH----cCCeEEEEecCCCCcchHHHHHHHHH-Hhhc--cceEecchhhhhccchHHHHHHhccccc
Confidence 568899999997554 47788999999999999986665543 3232 35677778665555 4677776555444
Q ss_pred EEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhc----hhhhhccCeeEEEEcCccccCChh-hHHHHHHHc-ccC-
Q 000139 602 ILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQD----SKVFKRKKWKYLILDEAHLIKNWK-SQRWQTLLN-FNS- 674 (2062)
Q Consensus 602 Vl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d----~~~L~r~~W~lVILDEAH~IKN~~-Sk~~qaL~~-L~a- 674 (2062)
+..|...-. ....++|+|-++++.- ...++. ...||+||+|+|.+.. .-.|.-+.- +..
T Consensus 369 --LlTGDvqin----------PeAsCLIMTTEILRsMLYrgadliRD--vE~VIFDEVHYiND~eRGvVWEEViIMlP~H 434 (1248)
T KOG0947|consen 369 --LLTGDVQIN----------PEASCLIMTTEILRSMLYRGADLIRD--VEFVIFDEVHYINDVERGVVWEEVIIMLPRH 434 (1248)
T ss_pred --eeecceeeC----------CCcceEeehHHHHHHHHhcccchhhc--cceEEEeeeeecccccccccceeeeeecccc
Confidence 445543222 2345888888877653 344544 4669999999997743 345655443 332
Q ss_pred ceEEEEecc
Q 000139 675 KRRILLTGT 683 (2062)
Q Consensus 675 ~~RLLLTGT 683 (2062)
-..++||||
T Consensus 435 V~~IlLSAT 443 (1248)
T KOG0947|consen 435 VNFILLSAT 443 (1248)
T ss_pred ceEEEEecc
Confidence 367999999
No 180
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=94.99 E-value=0.02 Score=79.02 Aligned_cols=181 Identities=24% Similarity=0.310 Sum_probs=102.7
Q ss_pred CCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCCh--HHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCC
Q 000139 522 KFPLREYQHIGLDWLVTMYEKRLNGILADEMGLG--KTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPA 599 (2062)
Q Consensus 522 k~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLG--KTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw~P~ 599 (2062)
...+.+||.....-..... .....++++.|+| ||+.+..+...... .+.....++++|..+..+|..+...++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 158 (866)
T COG0553 82 RFILIPHQLDIALEVLNEL--ALRVLIADEVGLGDLKTIEAGAILKELLL-RGEIKRVLILVPKTLRAQWVVELLEKFNI 158 (866)
T ss_pred ccccCcchhhhhhhhhhhh--hhchhhcccccccccccccccccchHhhh-hhhhccceeccchHHHHHHHHHhhhhccc
Confidence 3456667766554332222 2227889999999 89998777665543 45566889999999999999998775321
Q ss_pred -CeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhc----hhhhhccCe---eEEEEcCccccCChh---------
Q 000139 600 -FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQD----SKVFKRKKW---KYLILDEAHLIKNWK--------- 662 (2062)
Q Consensus 600 -lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d----~~~L~r~~W---~lVILDEAH~IKN~~--------- 662 (2062)
..++...+.......... +........++.++...... ...+....| +++++||+|++.+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (866)
T COG0553 159 RLAVLDKEGLRYLLKQYDA-YNPFSTEDLVLISLDLAKRSDSKRREALLEAEWGERDLLVIDEAHNLGSSEGTRKLAPLE 237 (866)
T ss_pred cchhhhhhhhhhhhhhhcc-cccccchhhhhhhhhhhhhhhhhhhhhhhcccccchhhhhcchHhhcccccccccccchh
Confidence 111111111111110000 00000111134444444332 122344456 899999999987742
Q ss_pred hHHHHHHHcccC--------ceEEEEeccCCCCChHHHHHHHHHhCCCCCCC
Q 000139 663 SQRWQTLLNFNS--------KRRILLTGTPLQNDLMELWSLMHFLMPHIFQS 706 (2062)
Q Consensus 663 Sk~~qaL~~L~a--------~~RLLLTGTPLQNsL~ELwSLL~FL~P~iF~s 706 (2062)
...+..+..+.. ....++++||.+....+++..+.++.+..+..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (866)
T COG0553 238 TLEYELLKQLAEKIPSKLLDLKVLLLSATPEQLKEEDLFARLRLLDPLRLAD 289 (866)
T ss_pred hhHHHHHHHHhhcccccccccchhhhccchhhccccccchhhhhccccchhh
Confidence 333333333311 13458899999998888887777776665544
No 181
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=94.90 E-value=0.12 Score=67.60 Aligned_cols=152 Identities=18% Similarity=0.365 Sum_probs=96.2
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcH-HHHHHHHHHHCCCCe
Q 000139 523 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVM-LNWETEFLKWCPAFK 601 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL-~QW~~Efkkw~P~lk 601 (2062)
++|-|+|..++. ...++...++..-+-.|||+.|=-.|+.-+..+ .+++.-.|--.+ .|=-+||..=+.+
T Consensus 128 F~LDpFQ~~aI~----Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k---QRVIYTSPIKALSNQKYREl~~EF~D-- 198 (1041)
T KOG0948|consen 128 FTLDPFQSTAIK----CIDRGESVLVSAHTSAGKTVVAEYAIAMSLREK---QRVIYTSPIKALSNQKYRELLEEFKD-- 198 (1041)
T ss_pred cccCchHhhhhh----hhcCCceEEEEeecCCCcchHHHHHHHHHHHhc---CeEEeeChhhhhcchhHHHHHHHhcc--
Confidence 678999999985 345577788888899999999877776655543 356777786444 4456676544332
Q ss_pred EEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhh----chhhhhccCeeEEEEcCccccCChh-hHHHHH-HHcc-cC
Q 000139 602 ILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQ----DSKVFKRKKWKYLILDEAHLIKNWK-SQRWQT-LLNF-NS 674 (2062)
Q Consensus 602 Vl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~----d~~~L~r~~W~lVILDEAH~IKN~~-Sk~~qa-L~~L-~a 674 (2062)
|....|.-. -......+|+|-++++. .....+.+.| ||+||.|+++... .-.|.. +.-+ ..
T Consensus 199 VGLMTGDVT----------InP~ASCLVMTTEILRsMLYRGSEvmrEVaW--VIFDEIHYMRDkERGVVWEETIIllP~~ 266 (1041)
T KOG0948|consen 199 VGLMTGDVT----------INPDASCLVMTTEILRSMLYRGSEVMREVAW--VIFDEIHYMRDKERGVVWEETIILLPDN 266 (1041)
T ss_pred cceeeccee----------eCCCCceeeeHHHHHHHHHhccchHhheeee--EEeeeehhccccccceeeeeeEEecccc
Confidence 333334321 11233466677666654 4455565555 9999999998743 223332 2222 34
Q ss_pred ceEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhc
Q 000139 675 KRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFC 715 (2062)
Q Consensus 675 ~~RLLLTGTPLQNsL~ELwSLL~FL~P~iF~s~~eFkewFs 715 (2062)
-+-++||||- .+..+|.+|++
T Consensus 267 vr~VFLSATi--------------------PNA~qFAeWI~ 287 (1041)
T KOG0948|consen 267 VRFVFLSATI--------------------PNARQFAEWIC 287 (1041)
T ss_pred ceEEEEeccC--------------------CCHHHHHHHHH
Confidence 4668899992 23567888886
No 182
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.89 E-value=0.22 Score=57.32 Aligned_cols=126 Identities=22% Similarity=0.234 Sum_probs=66.3
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCeEE
Q 000139 524 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKIL 603 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw~P~lkVl 603 (2062)
+|-+-|+.++..++. ....-.+|.-..|.|||.....+...+. ..+ .++++++|+..... ++..-+ +....
T Consensus 1 ~L~~~Q~~a~~~~l~--~~~~~~~l~G~aGtGKT~~l~~~~~~~~-~~g--~~v~~~apT~~Aa~---~L~~~~-~~~a~ 71 (196)
T PF13604_consen 1 TLNEEQREAVRAILT--SGDRVSVLQGPAGTGKTTLLKALAEALE-AAG--KRVIGLAPTNKAAK---ELREKT-GIEAQ 71 (196)
T ss_dssp -S-HHHHHHHHHHHH--CTCSEEEEEESTTSTHHHHHHHHHHHHH-HTT----EEEEESSHHHHH---HHHHHH-TS-EE
T ss_pred CCCHHHHHHHHHHHh--cCCeEEEEEECCCCCHHHHHHHHHHHHH-hCC--CeEEEECCcHHHHH---HHHHhh-Ccchh
Confidence 478899999999875 2223456777899999986655544443 333 57899999964432 122211 11111
Q ss_pred EEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchh-hh----hccCeeEEEEcCccccCChhhHHHHHHHccc-CceE
Q 000139 604 TYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK-VF----KRKKWKYLILDEAHLIKNWKSQRWQTLLNFN-SKRR 677 (2062)
Q Consensus 604 ~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~-~L----~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L~-a~~R 677 (2062)
+++ ..+..... .. .....++||||||-.+.+.. ....+..+. ...+
T Consensus 72 Ti~--------------------------~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~--~~~ll~~~~~~~~k 123 (196)
T PF13604_consen 72 TIH--------------------------SFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQ--LARLLRLAKKSGAK 123 (196)
T ss_dssp EHH--------------------------HHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHH--HHHHHHHS-T-T-E
T ss_pred hHH--------------------------HHHhcCCcccccccccCCcccEEEEecccccCHHH--HHHHHHHHHhcCCE
Confidence 111 00000000 00 02345799999999986432 333333333 3679
Q ss_pred EEEeccCCC
Q 000139 678 ILLTGTPLQ 686 (2062)
Q Consensus 678 LLLTGTPLQ 686 (2062)
++|.|-|-|
T Consensus 124 lilvGD~~Q 132 (196)
T PF13604_consen 124 LILVGDPNQ 132 (196)
T ss_dssp EEEEE-TTS
T ss_pred EEEECCcch
Confidence 999999987
No 183
>PRK14873 primosome assembly protein PriA; Provisional
Probab=94.67 E-value=0.15 Score=68.51 Aligned_cols=125 Identities=12% Similarity=-0.004 Sum_probs=85.2
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCCCCeEEEEeCChhhHHhhhhccC--CCCCceEE
Q 000139 552 MGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWL--KPNSFHVC 628 (2062)
Q Consensus 552 MGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw~P~lkVl~y~Gs~kerk~~r~gw~--k~~~fdVV 628 (2062)
.|.|||-.-+.++...... | +.+||+||. ++..|+..-|+..+++..+.+||........ ...|. ..+...||
T Consensus 169 ~GSGKTevyl~~i~~~l~~-G--k~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R-~~~w~~~~~G~~~IV 244 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRA-G--RGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADR-YRRWLAVLRGQARVV 244 (665)
T ss_pred CCCcHHHHHHHHHHHHHHc-C--CeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHH-HHHHHHHhCCCCcEE
Confidence 4999999999998887653 2 368999998 6889999999999886788888886544322 22333 34567899
Q ss_pred EEehhhhhhchhhhhccCeeEEEEcCcccc--CChhhHHH--H---HHH-cccCceEEEEeccCC
Q 000139 629 ITTYRLIIQDSKVFKRKKWKYLILDEAHLI--KNWKSQRW--Q---TLL-NFNSKRRILLTGTPL 685 (2062)
Q Consensus 629 ITSYe~l~~d~~~L~r~~W~lVILDEAH~I--KN~~Sk~~--q---aL~-~L~a~~RLLLTGTPL 685 (2062)
|-|...+..-. .+..+|||||=|.- |...+-++ + .++ .+..-..+|-|+||-
T Consensus 245 iGtRSAvFaP~-----~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPS 304 (665)
T PRK14873 245 VGTRSAVFAPV-----EDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHART 304 (665)
T ss_pred EEcceeEEecc-----CCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCC
Confidence 99988764332 35689999999963 33221111 1 111 223445777799995
No 184
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.55 E-value=0.35 Score=50.53 Aligned_cols=107 Identities=16% Similarity=0.081 Sum_probs=57.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCeEEEEeCChhhHHhhhhccCCC
Q 000139 543 RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKP 622 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw~P~lkVl~y~Gs~kerk~~r~gw~k~ 622 (2062)
+...+|.-+.|.|||..+-.++..+.. ...+++++........+.........
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~------------------------ 71 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFR---PGAPFLYLNASDLLEGLVVAELFGHF------------------------ 71 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhc---CCCCeEEEehhhhhhhhHHHHHhhhh------------------------
Confidence 556788999999999776666555531 12355555444444433332221110
Q ss_pred CCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChh-hHHHHHHHcc------cCceEEEEeccCCCC
Q 000139 623 NSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWK-SQRWQTLLNF------NSKRRILLTGTPLQN 687 (2062)
Q Consensus 623 ~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~-Sk~~qaL~~L------~a~~RLLLTGTPLQN 687 (2062)
..... ..........+||+||+|++.... ......+..+ ....++++|+++...
T Consensus 72 ---------~~~~~--~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~ 132 (151)
T cd00009 72 ---------LVRLL--FELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLL 132 (151)
T ss_pred ---------hHhHH--HHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcccc
Confidence 00000 011122346899999999883322 2333444444 245678888887653
No 185
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=94.53 E-value=0.19 Score=67.67 Aligned_cols=76 Identities=18% Similarity=0.259 Sum_probs=55.3
Q ss_pred CCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCc-HHHHHHHHHHHCCCC
Q 000139 522 KFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSV-MLNWETEFLKWCPAF 600 (2062)
Q Consensus 522 k~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSL-L~QW~~Efkkw~P~l 600 (2062)
...|-+.|+.+|.+.+. .....|+--..|.|||.++++++.++.. .|. ++||++|+.. +.+....+... ++
T Consensus 155 ~~~ln~~Q~~Av~~~l~---~~~~~lI~GpPGTGKT~t~~~ii~~~~~-~g~--~VLv~a~sn~Avd~l~e~l~~~--~~ 226 (637)
T TIGR00376 155 DPNLNESQKEAVSFALS---SKDLFLIHGPPGTGKTRTLVELIRQLVK-RGL--RVLVTAPSNIAVDNLLERLALC--DQ 226 (637)
T ss_pred CCCCCHHHHHHHHHHhc---CCCeEEEEcCCCCCHHHHHHHHHHHHHH-cCC--CEEEEcCcHHHHHHHHHHHHhC--CC
Confidence 35789999999988654 2345678888999999999888887754 333 8999999974 56666666653 34
Q ss_pred eEEEE
Q 000139 601 KILTY 605 (2062)
Q Consensus 601 kVl~y 605 (2062)
+++.+
T Consensus 227 ~vvRl 231 (637)
T TIGR00376 227 KIVRL 231 (637)
T ss_pred cEEEe
Confidence 44444
No 186
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.41 E-value=0.093 Score=65.00 Aligned_cols=130 Identities=20% Similarity=0.225 Sum_probs=83.2
Q ss_pred CCCChHHHHHHH-HHHHHHHhcCCCCcEEEEecCC-cHHHH---HHHHHHHCCCCeEEEEeCChhhHHhhhhccCCCCCc
Q 000139 551 EMGLGKTIMTIA-MLAHLACEKGIWGPHLIVVPTS-VMLNW---ETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNSF 625 (2062)
Q Consensus 551 EMGLGKTIQaIA-LLa~L~~~~g~~Gp~LIVvPtS-LL~QW---~~Efkkw~P~lkVl~y~Gs~kerk~~r~gw~k~~~f 625 (2062)
=+|.|||..-+. .+..|.......-+.||+.|+. |..|- ..++-++..--..+.|+|...+.++... ..+.
T Consensus 66 rtgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l----~~np 141 (529)
T KOG0337|consen 66 RTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILL----NENP 141 (529)
T ss_pred ecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHh----ccCC
Confidence 389999965332 2223332221123689999995 55553 4444454433344577777776655432 1367
Q ss_pred eEEEEehhhhhhchh--hhhccCeeEEEEcCccccC--ChhhHHHHHHHccc-CceEEEEeccC
Q 000139 626 HVCITTYRLIIQDSK--VFKRKKWKYLILDEAHLIK--NWKSQRWQTLLNFN-SKRRILLTGTP 684 (2062)
Q Consensus 626 dVVITSYe~l~~d~~--~L~r~~W~lVILDEAH~IK--N~~Sk~~qaL~~L~-a~~RLLLTGTP 684 (2062)
||||.|...+..-.. .+.-....|||+|||.+|- .+.-+..+.+.++. +...+++|||-
T Consensus 142 Dii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~~~QTllfSatl 205 (529)
T KOG0337|consen 142 DIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPESRQTLLFSATL 205 (529)
T ss_pred CEEEecCceeeeeehheeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccC
Confidence 899999887764422 1344557899999999984 36678888888885 45789999994
No 187
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=94.39 E-value=0.33 Score=61.55 Aligned_cols=60 Identities=15% Similarity=0.043 Sum_probs=43.3
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC
Q 000139 524 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT 583 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt 583 (2062)
..+|-|..-..-+-+-...+..|+|-...|.|||+.-++++.......+..-.-||-|..
T Consensus 16 ~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSR 75 (755)
T KOG1131|consen 16 YIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSR 75 (755)
T ss_pred ccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecC
Confidence 457888765555555566788899999999999999999988766555433334666654
No 188
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=94.34 E-value=0.12 Score=64.79 Aligned_cols=89 Identities=17% Similarity=0.207 Sum_probs=52.6
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHH-HHHHHC-CCCeEEEEeCChhhHHhhhhccCCCCC
Q 000139 547 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWET-EFLKWC-PAFKILTYFGSAKERKFKRQGWLKPNS 624 (2062)
Q Consensus 547 ILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~-Efkkw~-P~lkVl~y~Gs~kerk~~r~gw~k~~~ 624 (2062)
|+--..|.|||+.++.++..+.. .......+++|+...+.+... .|..-. +. .
T Consensus 5 ~I~G~aGTGKTvla~~l~~~l~~-~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~~------------------------~ 59 (352)
T PF09848_consen 5 LITGGAGTGKTVLALNLAKELQN-SEEGKKVLYLCGNHPLRNKLREQLAKKYNPK------------------------L 59 (352)
T ss_pred EEEecCCcCHHHHHHHHHHHhhc-cccCCceEEEEecchHHHHHHHHHhhhcccc------------------------h
Confidence 55667999999999999988721 222346788888876666544 443321 10 0
Q ss_pred ceEEEEehhhhhhchh--hhhccCeeEEEEcCccccCC
Q 000139 625 FHVCITTYRLIIQDSK--VFKRKKWKYLILDEAHLIKN 660 (2062)
Q Consensus 625 fdVVITSYe~l~~d~~--~L~r~~W~lVILDEAH~IKN 660 (2062)
....+..+..+.+... ......+++|||||||++..
T Consensus 60 ~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 60 KKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 1111222222222211 22345689999999999976
No 189
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=94.28 E-value=0.42 Score=65.27 Aligned_cols=136 Identities=24% Similarity=0.225 Sum_probs=83.4
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCC
Q 000139 521 LKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAF 600 (2062)
Q Consensus 521 Lk~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw~P~l 600 (2062)
....|.+-|+.++..+.. +.-.||.-..|.|||.++-+++..+.. .+...++++++|+........+.- +.
T Consensus 320 ~~~~l~~~Q~~Ai~~~~~----~~~~iitGgpGTGKTt~l~~i~~~~~~-~~~~~~v~l~ApTg~AA~~L~e~~----g~ 390 (720)
T TIGR01448 320 LRKGLSEEQKQALDTAIQ----HKVVILTGGPGTGKTTITRAIIELAEE-LGGLLPVGLAAPTGRAAKRLGEVT----GL 390 (720)
T ss_pred cCCCCCHHHHHHHHHHHh----CCeEEEECCCCCCHHHHHHHHHHHHHH-cCCCceEEEEeCchHHHHHHHHhc----CC
Confidence 346789999999987753 446789999999999877766665543 332246888899987766554421 11
Q ss_pred eEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHcccCceEEEE
Q 000139 601 KILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILL 680 (2062)
Q Consensus 601 kVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L~a~~RLLL 680 (2062)
...++| ...+|..... .... .-.....++||||||+++-.. .....+..+....|++|
T Consensus 391 ~a~Tih--------~lL~~~~~~~----------~~~~--~~~~~~~~llIvDEaSMvd~~--~~~~Ll~~~~~~~rlil 448 (720)
T TIGR01448 391 TASTIH--------RLLGYGPDTF----------RHNH--LEDPIDCDLLIVDESSMMDTW--LALSLLAALPDHARLLL 448 (720)
T ss_pred ccccHH--------HHhhccCCcc----------chhh--hhccccCCEEEEeccccCCHH--HHHHHHHhCCCCCEEEE
Confidence 111110 0011110000 0000 001245689999999999643 34555666777889999
Q ss_pred eccCCCC
Q 000139 681 TGTPLQN 687 (2062)
Q Consensus 681 TGTPLQN 687 (2062)
-|=|-|-
T Consensus 449 vGD~~QL 455 (720)
T TIGR01448 449 VGDTDQL 455 (720)
T ss_pred ECccccc
Confidence 9998773
No 190
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=94.23 E-value=0.042 Score=71.19 Aligned_cols=72 Identities=26% Similarity=0.478 Sum_probs=56.1
Q ss_pred CCCCCChhhhHHHHHHHHhcCCCchhHHHHhhccccCccccccccCChhhHHHHHHHHHHHHHhCCCCCccccccccccc
Q 000139 1659 SPDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVPDNSINEKTSNVGSG 1738 (2062)
Q Consensus 1659 ~~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1738 (2062)
..|.|+++|++.|..+|-+.|..|..|+++| .|+|.+|+.|||.++...-. .+.+
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g~~W~~Ig~~l------------gr~P~~crd~wr~~~~~g~~-----------~~r~-- 437 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHGNDWKEIGKAL------------GRMPMDCRDRWRQYVKCGSK-----------RNRG-- 437 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhcccHHHHHHHH------------ccCcHHHHHHHHHhhccccc-----------cccC--
Confidence 5799999999999999999999999999988 39999999999998864321 0111
Q ss_pred ceeEeechHHHHHHHHHHHhc
Q 000139 1739 KALLKVTEDNVRTLLNVAAEQ 1759 (2062)
Q Consensus 1739 ~~~~~~~~~~~~~~~~~~~~~ 1759 (2062)
.-|-+..+.||.++.+.
T Consensus 438 ----~Ws~eEe~~Llk~V~~~ 454 (607)
T KOG0051|consen 438 ----AWSIEEEEKLLKTVNEM 454 (607)
T ss_pred ----cchHHHHHHHHHHHHHH
Confidence 23445567788888543
No 191
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=94.21 E-value=0.44 Score=64.40 Aligned_cols=153 Identities=18% Similarity=0.241 Sum_probs=105.0
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCCCCe
Q 000139 523 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCPAFK 601 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw~P~lk 601 (2062)
..|-+-|..++.-+..........+|.--+|.|||-.-+-+|+..... | +-+||+||- ++..|-...|+.-++ .+
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~-G--kqvLvLVPEI~Ltpq~~~rf~~rFg-~~ 272 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ-G--KQVLVLVPEIALTPQLLARFKARFG-AK 272 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc-C--CEEEEEeccccchHHHHHHHHHHhC-CC
Confidence 468899999999888764223456889999999999888888877653 3 478999998 789998888876665 78
Q ss_pred EEEEeCChhhHHhhhhccC--CCCCceEEEEehhhhhhchhhhhccCeeEEEEcCcccc--CChhhHHHH--HH----Hc
Q 000139 602 ILTYFGSAKERKFKRQGWL--KPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLI--KNWKSQRWQ--TL----LN 671 (2062)
Q Consensus 602 Vl~y~Gs~kerk~~r~gw~--k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~I--KN~~Sk~~q--aL----~~ 671 (2062)
+.++|..-.... +...|. ..+...|||-|-..+..-. .+-.+|||||=|-- |-.+.-++. -+ -.
T Consensus 273 v~vlHS~Ls~~e-r~~~W~~~~~G~~~vVIGtRSAlF~Pf-----~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~ 346 (730)
T COG1198 273 VAVLHSGLSPGE-RYRVWRRARRGEARVVIGTRSALFLPF-----KNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAK 346 (730)
T ss_pred hhhhcccCChHH-HHHHHHHHhcCCceEEEEechhhcCch-----hhccEEEEeccccccccCCcCCCcCHHHHHHHHHH
Confidence 888876544332 222343 3467889998887775432 23589999999964 332221211 11 12
Q ss_pred ccCceEEEEeccCC
Q 000139 672 FNSKRRILLTGTPL 685 (2062)
Q Consensus 672 L~a~~RLLLTGTPL 685 (2062)
...-..+|=|+||-
T Consensus 347 ~~~~pvvLgSATPS 360 (730)
T COG1198 347 KENAPVVLGSATPS 360 (730)
T ss_pred HhCCCEEEecCCCC
Confidence 23345788899995
No 192
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=94.01 E-value=8 Score=53.07 Aligned_cols=111 Identities=17% Similarity=0.222 Sum_probs=86.1
Q ss_pred cchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccc
Q 000139 1065 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSG 1144 (2062)
Q Consensus 1065 SGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAG 1144 (2062)
-.|+.++..-+......|..|||-|-....-..|...|...|+++..|+-.-. .|..-+-.+-. ..-..-++|.-+
T Consensus 412 ~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~AG--~~gaVTiATNMA 487 (822)
T COG0653 412 EEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQAG--QPGAVTIATNMA 487 (822)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhcC--CCCccccccccc
Confidence 47999999999999999999999999999999999999999999988877666 44444444432 222224678899
Q ss_pred ccccCcc-cCC----------EEEEecCCCChhhHHHHHHhhhccC
Q 000139 1145 GVGINLV-GAD----------TVIFYDSDWNPAMDQQAQDRCHRIG 1179 (2062)
Q Consensus 1145 G~GLNLT-~AD----------tVIfyD~dWNPa~d~QA~gRahRIG 1179 (2062)
|.|-++. +.+ +||=-.-.=+--.|-|--||++|.|
T Consensus 488 GRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQG 533 (822)
T COG0653 488 GRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQG 533 (822)
T ss_pred cCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCC
Confidence 9998874 333 4665555555667779999999999
No 193
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=93.94 E-value=0.46 Score=64.79 Aligned_cols=91 Identities=16% Similarity=0.297 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHH-cCCcEEEecCCCCHHHHHHHHHHHhcC---CCceEEEEeccc
Q 000139 1068 LQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISL-YGYTYMRLDGSTQPEERQTLMQRFNTN---PKIFLFILSTRS 1143 (2062)
Q Consensus 1068 Lq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~-~Gi~y~RLDGsTs~eqRq~lmerFN~D---~~IfVfLLSTrA 1143 (2062)
...+...|..+...+.++|||...-.+|..+..+|.. .++. +.+.|. ..|..++++|... +.--| |+.+.+
T Consensus 520 ~~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~V-L~g~~s 594 (697)
T PRK11747 520 TAEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSV-LFGLQS 594 (697)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeE-EEEecc
Confidence 4455555555544444578877777888888888753 3333 344554 2578899888642 22224 667789
Q ss_pred cccccCccc--CCEEEEecCCC
Q 000139 1144 GGVGINLVG--ADTVIFYDSDW 1163 (2062)
Q Consensus 1144 GG~GLNLT~--ADtVIfyD~dW 1163 (2062)
..+||++.+ +..||+.=.|+
T Consensus 595 f~EGVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 595 FAEGLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred ccccccCCCCceEEEEEEcCCC
Confidence 999999987 68888887666
No 194
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.23 E-value=0.38 Score=59.34 Aligned_cols=146 Identities=20% Similarity=0.287 Sum_probs=90.8
Q ss_pred CCcEEEEcCCCChHHHHHHH--HHHH---HHHhcCCCC-cEEEEecCC-cHHHHHHHHHHHC-CCCeEEEEeCChhhHHh
Q 000139 543 RLNGILADEMGLGKTIMTIA--MLAH---LACEKGIWG-PHLIVVPTS-VMLNWETEFLKWC-PAFKILTYFGSAKERKF 614 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIA--LLa~---L~~~~g~~G-p~LIVvPtS-LL~QW~~Efkkw~-P~lkVl~y~Gs~kerk~ 614 (2062)
+...|-...+|.|||+.-+. ++.. ........+ .+||+.|+. |..|-+.|.+++. .+++.+.++|..+....
T Consensus 257 G~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~eq 336 (629)
T KOG0336|consen 257 GIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQ 336 (629)
T ss_pred CcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchhH
Confidence 55567777899999975431 1111 111111122 468888985 5666777776653 56666666655433221
Q ss_pred hhhccCCCCCceEEEEehhhhhhc--hhhhhccCeeEEEEcCccccCC--hhhHHHHHHHcccCceEEEEeccCCCCChH
Q 000139 615 KRQGWLKPNSFHVCITTYRLIIQD--SKVFKRKKWKYLILDEAHLIKN--WKSQRWQTLLNFNSKRRILLTGTPLQNDLM 690 (2062)
Q Consensus 615 ~r~gw~k~~~fdVVITSYe~l~~d--~~~L~r~~W~lVILDEAH~IKN--~~Sk~~qaL~~L~a~~RLLLTGTPLQNsL~ 690 (2062)
... -..+.+++|.|...|..- ...+.-....|||||||.++-. +.-+..+.|+.++..+-..||..-....+.
T Consensus 337 ie~---lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~Vr 413 (629)
T KOG0336|consen 337 IED---LKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVR 413 (629)
T ss_pred HHH---HhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHH
Confidence 111 013568999999877543 2233444679999999999865 567888999999888877776554444444
Q ss_pred H
Q 000139 691 E 691 (2062)
Q Consensus 691 E 691 (2062)
-
T Consensus 414 r 414 (629)
T KOG0336|consen 414 R 414 (629)
T ss_pred H
Confidence 3
No 195
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=93.10 E-value=0.52 Score=62.91 Aligned_cols=140 Identities=16% Similarity=0.128 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCC--CCcEEEEecCCcHHH-HHHHHHHHCCCCeEE
Q 000139 527 EYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGI--WGPHLIVVPTSVMLN-WETEFLKWCPAFKIL 603 (2062)
Q Consensus 527 pYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~--~Gp~LIVvPtSLL~Q-W~~Efkkw~P~lkVl 603 (2062)
+.|+.++...+. +.-.||.-..|.|||.++..++..+....+. ...+++++|+.--.. ...-+..-...+...
T Consensus 148 ~~Qk~A~~~al~----~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~ 223 (586)
T TIGR01447 148 NWQKVAVALALK----SNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA 223 (586)
T ss_pred HHHHHHHHHHhh----CCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc
Confidence 799999876665 4567888999999999988888777543322 135888999964433 333333321111100
Q ss_pred EEeCChhhHHhhhhccCCCCCceEEEEehhhhhhc--hh-----hhhccCeeEEEEcCccccCChhhHHHHHHHcccCce
Q 000139 604 TYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQD--SK-----VFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKR 676 (2062)
Q Consensus 604 ~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d--~~-----~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L~a~~ 676 (2062)
....... . .-..|-+..+... .. .-....+++||||||-++-. ......+..+....
T Consensus 224 -----~~~~~~~-----~----~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~--~l~~~ll~al~~~~ 287 (586)
T TIGR01447 224 -----EALIAAL-----P----SEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDL--PLMAKLLKALPPNT 287 (586)
T ss_pred -----hhhhhcc-----c----cccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCH--HHHHHHHHhcCCCC
Confidence 0000000 0 0001111111100 00 01124689999999999964 34555666777888
Q ss_pred EEEEeccCCC
Q 000139 677 RILLTGTPLQ 686 (2062)
Q Consensus 677 RLLLTGTPLQ 686 (2062)
|++|.|=|-|
T Consensus 288 rlIlvGD~~Q 297 (586)
T TIGR01447 288 KLILLGDKNQ 297 (586)
T ss_pred EEEEECChhh
Confidence 9999999877
No 196
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=92.89 E-value=0.073 Score=66.79 Aligned_cols=49 Identities=33% Similarity=0.669 Sum_probs=43.0
Q ss_pred CCCCCChhhhHHHHHHHHhcCCC-chhHHHHhhccccCccccccccCChhhHHHHHHHHHH
Q 000139 1659 SPDVWLPQEDAILCAVVHEYGPN-WSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQR 1718 (2062)
Q Consensus 1659 ~~~~w~~~ed~~l~~~v~~~g~n-w~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~ 1718 (2062)
.++.|...||++|.|-|--||.| |.-|+-.| .--.+++|+-||-+.+.-
T Consensus 6 kggvwrntEdeilkaav~kyg~nqws~i~sll-----------~~kt~rqC~~rw~e~ldp 55 (617)
T KOG0050|consen 6 KGGVWRNTEDEVLKAAVMKYGKNQWSRIASLL-----------NRKTARQCKARWEEWLDP 55 (617)
T ss_pred ecceecccHHHHHHHHHHHcchHHHHHHHHHH-----------hhcchhHHHHHHHHHhCH
Confidence 47889999999999999999998 99999988 336789999999977653
No 197
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.87 E-value=0.13 Score=60.06 Aligned_cols=124 Identities=24% Similarity=0.348 Sum_probs=78.3
Q ss_pred cHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCc--EEEEecCC-cHHHHHHHHHH---HCCC
Q 000139 526 REYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGP--HLIVVPTS-VMLNWETEFLK---WCPA 599 (2062)
Q Consensus 526 RpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp--~LIVvPtS-LL~QW~~Efkk---w~P~ 599 (2062)
-+-|++.+-..+- +...+--.-.|+|||.. -+|+.|....+..|- +||+|-+. +..|-..|+.+ +.|+
T Consensus 66 sevqhecipqail----gmdvlcqaksgmgktav--fvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~ 139 (387)
T KOG0329|consen 66 SEVQHECIPQAIL----GMDVLCQAKSGMGKTAV--FVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPS 139 (387)
T ss_pred hHhhhhhhhHHhh----cchhheecccCCCceee--eehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCC
Confidence 3455555543322 33344455689999954 345555555555553 57778774 66677777655 5699
Q ss_pred CeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhc--hhhhhccCeeEEEEcCcccc
Q 000139 600 FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQD--SKVFKRKKWKYLILDEAHLI 658 (2062)
Q Consensus 600 lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d--~~~L~r~~W~lVILDEAH~I 658 (2062)
.++-+|+|.-...+... ..+ +..|||+.|...+..- ...|.-......|||||..+
T Consensus 140 vkvaVFfGG~~Ikkdee--~lk-~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkm 197 (387)
T KOG0329|consen 140 VKVSVFFGGLFIKKDEE--LLK-NCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKM 197 (387)
T ss_pred ceEEEEEcceeccccHH--HHh-CCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHH
Confidence 99999999765432211 112 3779999999877543 23455566788999999854
No 198
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=92.86 E-value=0.071 Score=53.25 Aligned_cols=59 Identities=22% Similarity=0.492 Sum_probs=43.1
Q ss_pred CCCChhhhHHHHHHHHh------cC--C------CchhHHHHhhccccCccccccccCChhhHHHHHHHHHHHHHhCCCC
Q 000139 1661 DVWLPQEDAILCAVVHE------YG--P------NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVPDN 1726 (2062)
Q Consensus 1661 ~~w~~~ed~~l~~~v~~------~g--~------nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~~~ 1726 (2062)
..|+..|-.+|..++.+ |+ + -|..||+.|. . .|..|+|.||+.||++|..+|-.....+
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~---~----~G~~rt~~qc~~Kw~~L~~~Yk~~k~~~ 74 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELA---E----HGYNRTPEQCRNKWKNLKKKYKKIKDRN 74 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHH---H----HC----HHHHHHHHHHHHHHHHCSSSSS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHH---H----cCCCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 47999999999999888 32 2 3999999983 2 3678999999999999999998765543
No 199
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=92.86 E-value=0.11 Score=67.03 Aligned_cols=73 Identities=23% Similarity=0.389 Sum_probs=58.4
Q ss_pred CCCCChhhhHHHHHHHHhcCC-CchhHHHHhhccccCccccccccCChhhHHHHHHHHHHHHHhCCCCCccccccccccc
Q 000139 1660 PDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVPDNSINEKTSNVGSG 1738 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1738 (2062)
.|+|...||..|.++|-+||| ||.-|+-.+ .+|.+++|+.||-..+. .+....
T Consensus 20 ~gsw~~~EDe~l~~~vk~l~~nnws~vas~~-----------~~~~~kq~~~rw~~~ln-------------p~lk~~-- 73 (512)
T COG5147 20 GGSWKRTEDEDLKALVKKLGPNNWSKVASLL-----------ISSTGKQSSNRWNNHLN-------------PQLKKK-- 73 (512)
T ss_pred CCCCCCcchhHHHHHHhhcccccHHHHHHHh-----------cccccccccchhhhhhc-------------hhcccc--
Confidence 679999999999999999999 699999988 55999999999933221 111222
Q ss_pred ceeEeechHHHHHHHHHHHhccch
Q 000139 1739 KALLKVTEDNVRTLLNVAAEQEDN 1762 (2062)
Q Consensus 1739 ~~~~~~~~~~~~~~~~~~~~~~~~ 1762 (2062)
.++++.-..|+++..+++..
T Consensus 74 ----~~~~eed~~li~l~~~~~~~ 93 (512)
T COG5147 74 ----NWSEEEDEQLIDLDKELGTQ 93 (512)
T ss_pred ----cccHHHHHHHHHHHHhcCch
Confidence 46788888899999888876
No 200
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=92.78 E-value=0.34 Score=54.39 Aligned_cols=79 Identities=19% Similarity=0.270 Sum_probs=53.7
Q ss_pred hhCCCeEEEEeCchHHHHHHHHHHHHcC----CcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecc--ccccccCccc
Q 000139 1079 KSDGHRALIFTQMTKMLDILEEFISLYG----YTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTR--SGGVGINLVG 1152 (2062)
Q Consensus 1079 ks~GhKVLIFSQ~t~mLDILe~~L~~~G----i~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTr--AGG~GLNLT~ 1152 (2062)
...+.++|||...-.+++.+...+...+ +..+ ..+ ...+..++++|..+... +|+++. +..+|||+.+
T Consensus 6 ~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~-~q~---~~~~~~~l~~~~~~~~~--il~~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 6 SAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVF-VQG---SKSRDELLEEFKRGEGA--ILLAVAGGSFSEGIDFPG 79 (167)
T ss_dssp HCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEE-EST---CCHHHHHHHHHCCSSSE--EEEEETTSCCGSSS--EC
T ss_pred hcCCCCEEEEeCCHHHHHHHHHHHHhhcccccceee-ecC---cchHHHHHHHHHhccCe--EEEEEecccEEEeecCCC
Confidence 3446799999999999999999987654 3222 222 34789999999985444 456666 8899999986
Q ss_pred --CCEEEEecCCC
Q 000139 1153 --ADTVIFYDSDW 1163 (2062)
Q Consensus 1153 --ADtVIfyD~dW 1163 (2062)
+..||+.-.|+
T Consensus 80 ~~~r~vii~glPf 92 (167)
T PF13307_consen 80 DLLRAVIIVGLPF 92 (167)
T ss_dssp ESEEEEEEES---
T ss_pred chhheeeecCCCC
Confidence 77888888776
No 201
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=92.75 E-value=0.45 Score=61.84 Aligned_cols=65 Identities=22% Similarity=0.248 Sum_probs=48.6
Q ss_pred CCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCc-HHHHHHH
Q 000139 522 KFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSV-MLNWETE 592 (2062)
Q Consensus 522 k~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSL-L~QW~~E 592 (2062)
...|-+-|..++.+.... + .--|+--.+|.|||.+.+-+|..+...+ ..+||.+|+.+ +.|-.+.
T Consensus 183 ~~~ln~SQk~Av~~~~~~--k-~l~~I~GPPGTGKT~TlvEiI~qlvk~~---k~VLVcaPSn~AVdNiver 248 (649)
T KOG1803|consen 183 NKNLNSSQKAAVSFAINN--K-DLLIIHGPPGTGKTRTLVEIISQLVKQK---KRVLVCAPSNVAVDNIVER 248 (649)
T ss_pred CccccHHHHHHHHHHhcc--C-CceEeeCCCCCCceeeHHHHHHHHHHcC---CeEEEEcCchHHHHHHHHH
Confidence 345788999999887762 2 3346667899999999988888776543 57899999975 6666553
No 202
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=92.63 E-value=0.25 Score=59.82 Aligned_cols=25 Identities=44% Similarity=0.651 Sum_probs=21.8
Q ss_pred HHHHHhhcCCCCCHHHHHhhhcccc
Q 000139 240 EELEALHNETDIPLQELLKRYAVDK 264 (2062)
Q Consensus 240 ~ELe~L~~E~ElPLEELL~~y~~~~ 264 (2062)
+++++|+.|+.|||.|||++|.+.-
T Consensus 133 ed~a~l~EEa~~pl~ElL~rY~G~~ 157 (542)
T KOG0699|consen 133 EDRADLIEEASVPLAELLKRYGGAG 157 (542)
T ss_pred HHHHHHHHhccCcHHHHHHHhcCCC
Confidence 5678899999999999999997754
No 203
>PRK04296 thymidine kinase; Provisional
Probab=92.49 E-value=0.55 Score=53.85 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=24.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEec
Q 000139 546 GILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVP 582 (2062)
Q Consensus 546 GILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvP 582 (2062)
.++.-+||.|||..++.++..+... + .+++|+.|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~-g--~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEER-G--MKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHc-C--CeEEEEec
Confidence 3677789999999888887766442 2 35666654
No 204
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=92.49 E-value=0.13 Score=65.70 Aligned_cols=50 Identities=30% Similarity=0.680 Sum_probs=44.4
Q ss_pred CCCCCChhhhHHHHHHHHhcCC-CchhHHHHhhccccCccccccccCChhhHHHHHHHHHHH
Q 000139 1659 SPDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRY 1719 (2062)
Q Consensus 1659 ~~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~ 1719 (2062)
++++|+++||..|.+-|-+||. .|.-|-..+ ++ |+--|||+||-+.+.+-
T Consensus 359 khg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~v---Pn--------RSdsQcR~RY~nvL~~s 409 (939)
T KOG0049|consen 359 KHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAV---PN--------RSDSQCRERYTNVLNRS 409 (939)
T ss_pred cCCCCCCHHHHHHHHHHHHhCccchhhHHHhc---CC--------ccHHHHHHHHHHHHHHh
Confidence 5899999999999999999999 699999977 55 99999999998877653
No 205
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=92.01 E-value=0.038 Score=67.21 Aligned_cols=131 Identities=20% Similarity=0.303 Sum_probs=72.4
Q ss_pred CCCChHHHHHH-HHHHHHHH-h-----cCCCCcE-EEEecCCcHHHHHHH-HHHHC--------CCCeEEEEeCChhhHH
Q 000139 551 EMGLGKTIMTI-AMLAHLAC-E-----KGIWGPH-LIVVPTSVMLNWETE-FLKWC--------PAFKILTYFGSAKERK 613 (2062)
Q Consensus 551 EMGLGKTIQaI-ALLa~L~~-~-----~g~~Gp~-LIVvPtSLL~QW~~E-fkkw~--------P~lkVl~y~Gs~kerk 613 (2062)
=+|.|||++-+ -+|+..+. + ...-||+ |||||+.-+.....+ +..++ |.++.....|.-..+.
T Consensus 215 fTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~e 294 (610)
T KOG0341|consen 215 FTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVRE 294 (610)
T ss_pred eecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHH
Confidence 38999998632 22221111 1 1223565 999999644333333 33332 6666666666554443
Q ss_pred hhhhccCCCCCceEEEEehhhhhhch--hhhhccCeeEEEEcCccccCChh--hHHHHHHHcccCc-eEEEEeccC
Q 000139 614 FKRQGWLKPNSFHVCITTYRLIIQDS--KVFKRKKWKYLILDEAHLIKNWK--SQRWQTLLNFNSK-RRILLTGTP 684 (2062)
Q Consensus 614 ~~r~gw~k~~~fdVVITSYe~l~~d~--~~L~r~~W~lVILDEAH~IKN~~--Sk~~qaL~~L~a~-~RLLLTGTP 684 (2062)
.... -..+.|+|+.|...+..-. ..+.---..|+.+|||.++-... -..-....-|++. ..||+|||-
T Consensus 295 ql~~---v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATM 367 (610)
T KOG0341|consen 295 QLDV---VRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATM 367 (610)
T ss_pred HHHH---HhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccc
Confidence 2211 1246899999998775431 11222235789999999986533 2222222334544 578999983
No 206
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=92.00 E-value=0.63 Score=63.11 Aligned_cols=148 Identities=22% Similarity=0.188 Sum_probs=87.7
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCCCCe
Q 000139 523 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCPAFK 601 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw~P~lk 601 (2062)
..|-.-|+.++...+.. ....-|++. .|.|||-+...+|..|... | +.+|+.+=+ +.+.|-..-++.+.- .
T Consensus 668 ~~LN~dQr~A~~k~L~a--edy~LI~GM-PGTGKTTtI~~LIkiL~~~-g--kkVLLtsyThsAVDNILiKL~~~~i--~ 739 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAA--EDYALILGM-PGTGKTTTISLLIKILVAL-G--KKVLLTSYTHSAVDNILIKLKGFGI--Y 739 (1100)
T ss_pred hhcCHHHHHHHHHHHhc--cchheeecC-CCCCchhhHHHHHHHHHHc-C--CeEEEEehhhHHHHHHHHHHhccCc--c
Confidence 47889999999876552 222335555 9999997777777766543 2 478888877 578888777776532 2
Q ss_pred EEEEeCChhhHHhhhhccC---------------CCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHH
Q 000139 602 ILTYFGSAKERKFKRQGWL---------------KPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRW 666 (2062)
Q Consensus 602 Vl~y~Gs~kerk~~r~gw~---------------k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~ 666 (2062)
++. .|+...-...-+.+. ..+...||.+|-=-+ ....|.+..|+|+|+|||-.|--+-
T Consensus 740 ~lR-LG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi--~~plf~~R~FD~cIiDEASQI~lP~---- 812 (1100)
T KOG1805|consen 740 ILR-LGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGI--NHPLFVNRQFDYCIIDEASQILLPL---- 812 (1100)
T ss_pred eee-cCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCC--CchhhhccccCEEEEccccccccch----
Confidence 222 233221111111111 012233444432211 1445777889999999998775433
Q ss_pred HHHHcccCceEEEEeccCCC
Q 000139 667 QTLLNFNSKRRILLTGTPLQ 686 (2062)
Q Consensus 667 qaL~~L~a~~RLLLTGTPLQ 686 (2062)
.|.-+.-.++..|-|-+.|
T Consensus 813 -~LgPL~~s~kFVLVGDh~Q 831 (1100)
T KOG1805|consen 813 -CLGPLSFSNKFVLVGDHYQ 831 (1100)
T ss_pred -hhhhhhhcceEEEeccccc
Confidence 2333455667788888776
No 207
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=91.81 E-value=0.73 Score=62.18 Aligned_cols=44 Identities=23% Similarity=0.366 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhhcCC--cE-EEEcCCCChHHHHHHHHHHHHHHhcC
Q 000139 529 QHIGLDWLVTMYEKRL--NG-ILADEMGLGKTIMTIAMLAHLACEKG 572 (2062)
Q Consensus 529 Q~~GL~WLv~l~~~~~--gG-ILADEMGLGKTIQaIALLa~L~~~~g 572 (2062)
|...+..|.+.+..+. .. ||.-..|.|||..+..|...+.|..+
T Consensus 21 Qe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~ 67 (830)
T PRK07003 21 QEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETG 67 (830)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccC
Confidence 5555556655555433 33 78899999999999999888887644
No 208
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=91.74 E-value=0.31 Score=61.98 Aligned_cols=127 Identities=24% Similarity=0.335 Sum_probs=79.3
Q ss_pred cHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHH-HHHHHHH---HH----HhcCCCCc-EEEEecCC-cHHHHHHHHHH
Q 000139 526 REYQHIGLDWLVTMYEKRLNGILADEMGLGKTIM-TIAMLAH---LA----CEKGIWGP-HLIVVPTS-VMLNWETEFLK 595 (2062)
Q Consensus 526 RpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQ-aIALLa~---L~----~~~g~~Gp-~LIVvPtS-LL~QW~~Efkk 595 (2062)
-|-|+.++--++ ++.+.|.-.|+|.|||.- .|-++.. +. ..+..-|| .+|++|+- |..|-+.|-.+
T Consensus 269 tpIqR~aipl~l----Q~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~k 344 (673)
T KOG0333|consen 269 TPIQRQAIPLGL----QNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNK 344 (673)
T ss_pred chHHHhhccchh----ccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHH
Confidence 355666554333 367788899999999932 2222222 11 01233455 47788996 55556777777
Q ss_pred HCC--CCeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhc--hhhhhccCeeEEEEcCccccC
Q 000139 596 WCP--AFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQD--SKVFKRKKWKYLILDEAHLIK 659 (2062)
Q Consensus 596 w~P--~lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d--~~~L~r~~W~lVILDEAH~IK 659 (2062)
|.- +++++...|...-.. +++.-..+++|+|.|...+... ...|-...-.|||+|||.++-
T Consensus 345 f~~~lg~r~vsvigg~s~EE---q~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmi 409 (673)
T KOG0333|consen 345 FGKPLGIRTVSVIGGLSFEE---QGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMI 409 (673)
T ss_pred hcccccceEEEEecccchhh---hhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhh
Confidence 763 467777766554221 2222235789999999888654 334555667999999999864
No 209
>PHA02533 17 large terminase protein; Provisional
Probab=91.66 E-value=0.67 Score=61.23 Aligned_cols=157 Identities=19% Similarity=0.283 Sum_probs=80.9
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHH-HHHHHHH---HCC
Q 000139 523 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLN-WETEFLK---WCP 598 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~Q-W~~Efkk---w~P 598 (2062)
..|+|+|..-+.+|.. .+.+ ++.-.=..|||..+.++++++++..+ ...+++++|+.--.. =...++. -.|
T Consensus 58 f~L~p~Q~~i~~~~~~---~R~~-ii~~aRq~GKStl~a~~al~~a~~~~-~~~v~i~A~~~~QA~~vF~~ik~~ie~~P 132 (534)
T PHA02533 58 VQMRDYQKDMLKIMHK---NRFN-ACNLSRQLGKTTVVAIFLLHYVCFNK-DKNVGILAHKASMAAEVLDRTKQAIELLP 132 (534)
T ss_pred cCCcHHHHHHHHHHhc---CeEE-EEEEcCcCChHHHHHHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHHHHhCH
Confidence 5689999998887632 2223 55555789999998877776666433 236777788521111 1122322 223
Q ss_pred CCeEEEEeCChhhHHhhhhccCCCCCceE-EEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHc-ccC--
Q 000139 599 AFKILTYFGSAKERKFKRQGWLKPNSFHV-CITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLN-FNS-- 674 (2062)
Q Consensus 599 ~lkVl~y~Gs~kerk~~r~gw~k~~~fdV-VITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~-L~a-- 674 (2062)
.+.-....... +... .+ . ++..| ++++ +....+.....++|+||+|.+++.. ..+.++.. +.+
T Consensus 133 ~l~~~~i~~~~--~~~I--~l-~-NGS~I~~lss------~~~t~rG~~~~~liiDE~a~~~~~~-e~~~ai~p~lasg~ 199 (534)
T PHA02533 133 DFLQPGIVEWN--KGSI--EL-E-NGSKIGAYAS------SPDAVRGNSFAMIYIDECAFIPNFI-DFWLAIQPVISSGR 199 (534)
T ss_pred HHhhcceeecC--ccEE--Ee-C-CCCEEEEEeC------CCCccCCCCCceEEEeccccCCCHH-HHHHHHHHHHHcCC
Confidence 22100000000 0000 00 1 22222 2222 1233455677899999999998854 33333332 222
Q ss_pred ceEEEEeccCC-CCChHHHHHHHH
Q 000139 675 KRRILLTGTPL-QNDLMELWSLMH 697 (2062)
Q Consensus 675 ~~RLLLTGTPL-QNsL~ELwSLL~ 697 (2062)
..++.+..||- .|...++|.-..
T Consensus 200 ~~r~iiiSTp~G~n~fye~~~~a~ 223 (534)
T PHA02533 200 SSKIIITSTPNGLNHFYDIWTAAV 223 (534)
T ss_pred CceEEEEECCCchhhHHHHHHHHH
Confidence 24688888884 344555554433
No 210
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.53 E-value=0.22 Score=64.10 Aligned_cols=133 Identities=18% Similarity=0.170 Sum_probs=70.6
Q ss_pred cCCCChHHHHHHHHHHHHHHhcCCCCcEEEEec-CCcHHHHHHHHH-----HHCCCCeEEEEeCChhhHHhhhhccCCCC
Q 000139 550 DEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVP-TSVMLNWETEFL-----KWCPAFKILTYFGSAKERKFKRQGWLKPN 623 (2062)
Q Consensus 550 DEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvP-tSLL~QW~~Efk-----kw~P~lkVl~y~Gs~kerk~~r~gw~k~~ 623 (2062)
..+|.|||+++.++|.++.. +|. ..+|+.|- ++++..-..-|. ++.- -.++.|.|..-.-+....---..+
T Consensus 4 matgsgkt~~ma~lil~~y~-kgy-r~flffvnq~nilekt~~nftd~~s~kylf-~e~i~~~d~~i~ikkvn~fsehnd 80 (812)
T COG3421 4 MATGSGKTLVMAGLILECYK-KGY-RNFLFFVNQANILEKTKLNFTDSVSSKYLF-SENININDENIEIKKVNNFSEHND 80 (812)
T ss_pred cccCCChhhHHHHHHHHHHH-hch-hhEEEEecchhHHHHHHhhcccchhhhHhh-hhhhhcCCceeeeeeecccCccCC
Confidence 35899999999999999865 454 46676665 456654443331 1110 111222222221111111111235
Q ss_pred CceEEEEehhhhhhchhh----------hhccCeeEEEEcCccccCC---------------hhhHHHHHHHcccCceEE
Q 000139 624 SFHVCITTYRLIIQDSKV----------FKRKKWKYLILDEAHLIKN---------------WKSQRWQTLLNFNSKRRI 678 (2062)
Q Consensus 624 ~fdVVITSYe~l~~d~~~----------L~r~~W~lVILDEAH~IKN---------------~~Sk~~qaL~~L~a~~RL 678 (2062)
...|+.||.+.+..+... |.. .--+++-||||+|.. +.+....++..-+....|
T Consensus 81 ~iei~fttiq~l~~d~~~~ken~itledl~~-~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~~l 159 (812)
T COG3421 81 AIEIYFTTIQGLFSDFTRAKENAITLEDLKD-QKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNLLL 159 (812)
T ss_pred ceEEEEeehHHHHHHHHhhccccccHhhHhh-CceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCceee
Confidence 678999999888776321 221 123456699999832 223233333333444566
Q ss_pred EEeccCCC
Q 000139 679 LLTGTPLQ 686 (2062)
Q Consensus 679 LLTGTPLQ 686 (2062)
..|+|-..
T Consensus 160 ef~at~~k 167 (812)
T COG3421 160 EFSATIPK 167 (812)
T ss_pred hhhhcCCc
Confidence 67776543
No 211
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=91.47 E-value=0.65 Score=62.24 Aligned_cols=143 Identities=18% Similarity=0.158 Sum_probs=82.2
Q ss_pred CcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcC-CCCcEEEEecCCcHHHHHHH-HHHHCCCCeE
Q 000139 525 LREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKG-IWGPHLIVVPTSVMLNWETE-FLKWCPAFKI 602 (2062)
Q Consensus 525 LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g-~~Gp~LIVvPtSLL~QW~~E-fkkw~P~lkV 602 (2062)
+-+.|+.++.-.+. +.-.||.-..|.|||.++..++..+....+ ....+++++|+.--..=..| +..-...+.+
T Consensus 153 ~~d~Qk~Av~~a~~----~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~ 228 (615)
T PRK10875 153 EVDWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPL 228 (615)
T ss_pred CCHHHHHHHHHHhc----CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhcccc
Confidence 45899999976554 456788889999999998888887654322 22357888999654433222 2221111100
Q ss_pred EEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhc-------hhhhhccCeeEEEEcCccccCChhhHHHHHHHcccCc
Q 000139 603 LTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQD-------SKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSK 675 (2062)
Q Consensus 603 l~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d-------~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L~a~ 675 (2062)
....+. +.. .-+.|-|..+... ...-....+++||||||-++-. ...+..+..+...
T Consensus 229 -----~~~~~~-----~~~----~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~--~lm~~ll~al~~~ 292 (615)
T PRK10875 229 -----TDEQKK-----RIP----EEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDL--PMMARLIDALPPH 292 (615)
T ss_pred -----chhhhh-----cCC----CchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcccH--HHHHHHHHhcccC
Confidence 000000 000 0011112211110 0011224579999999999953 4455667778888
Q ss_pred eEEEEeccCCCC
Q 000139 676 RRILLTGTPLQN 687 (2062)
Q Consensus 676 ~RLLLTGTPLQN 687 (2062)
.|++|-|=|-|-
T Consensus 293 ~rlIlvGD~~QL 304 (615)
T PRK10875 293 ARVIFLGDRDQL 304 (615)
T ss_pred CEEEEecchhhc
Confidence 999999998773
No 212
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.44 E-value=1.1 Score=57.30 Aligned_cols=132 Identities=16% Similarity=0.170 Sum_probs=96.3
Q ss_pred cchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHH----HcCC----cEEEecCCCCHHHHHHHHHHHhcCCCceE
Q 000139 1065 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFIS----LYGY----TYMRLDGSTQPEERQTLMQRFNTNPKIFL 1136 (2062)
Q Consensus 1065 SGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~----~~Gi----~y~RLDGsTs~eqRq~lmerFN~D~~IfV 1136 (2062)
+.|+.....++.++...|-|+|-|+...++..+|-...+ .-|- .+..+.|+-..++|.++-...-. ++. +
T Consensus 508 ~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~-G~L-~ 585 (1034)
T KOG4150|consen 508 SSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFG-GKL-C 585 (1034)
T ss_pred hhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhC-Cee-e
Confidence 678888999999999999999999999888765533321 1111 13445677777888777554332 333 4
Q ss_pred EEEeccccccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHH
Q 000139 1137 FILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENIL 1200 (2062)
Q Consensus 1137 fLLSTrAGG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Il 1200 (2062)
=|++|.+..+||++-+-|-||.+--|+.-+...|-.||++|-. ++-.-...+....|+..-+
T Consensus 586 giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRN--k~SLavyva~~~PVDQ~Y~ 647 (1034)
T KOG4150|consen 586 GIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRN--KPSLAVYVAFLGPVDQYYM 647 (1034)
T ss_pred EEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccC--CCceEEEEEeccchhhHhh
Confidence 5789999999999999999999999999999999999999944 3322223445556665443
No 213
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=91.43 E-value=0.39 Score=63.47 Aligned_cols=134 Identities=18% Similarity=0.168 Sum_probs=76.7
Q ss_pred HhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhc---CCCCcEEEEecCCcH-----HHHHHHHHHHCCCCeEE-EEeCCh
Q 000139 539 MYEKRLNGILADEMGLGKTIMTIAMLAHLACEK---GIWGPHLIVVPTSVM-----LNWETEFLKWCPAFKIL-TYFGSA 609 (2062)
Q Consensus 539 l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~---g~~Gp~LIVvPtSLL-----~QW~~Efkkw~P~lkVl-~y~Gs~ 609 (2062)
....+.-.|+|-++|.|||.|.=-||....... ...|-+=|-=|..+. ..-..|+..+....... .|.|+.
T Consensus 267 aIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRfd~ti 346 (1172)
T KOG0926|consen 267 AINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRFDGTI 346 (1172)
T ss_pred HhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEEecccc
Confidence 344567789999999999999988876542211 112223333454321 22344554432222222 233332
Q ss_pred hhHHhhhhccCCCCCceEEEEehhhhhhch-hhhhccCeeEEEEcCccccCChh---------------hHHHHHHHccc
Q 000139 610 KERKFKRQGWLKPNSFHVCITTYRLIIQDS-KVFKRKKWKYLILDEAHLIKNWK---------------SQRWQTLLNFN 673 (2062)
Q Consensus 610 kerk~~r~gw~k~~~fdVVITSYe~l~~d~-~~L~r~~W~lVILDEAH~IKN~~---------------Sk~~qaL~~L~ 673 (2062)
. ..-.|-.+|-..+.+.. ..|.-.++..|||||||.= +.+ .++++.=..++
T Consensus 347 ~------------e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHER-SvnTDILiGmLSRiV~LR~k~~ke~~~~k 413 (1172)
T KOG0926|consen 347 G------------EDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHER-SVNTDILIGMLSRIVPLRQKYYKEQCQIK 413 (1172)
T ss_pred C------------CCceeEEecchHHHHHHHHhHhhhhceeEEechhhhc-cchHHHHHHHHHHHHHHHHHHhhhhcccC
Confidence 1 23457788888888774 3466678999999999952 111 12222222334
Q ss_pred CceEEEEeccCC
Q 000139 674 SKRRILLTGTPL 685 (2062)
Q Consensus 674 a~~RLLLTGTPL 685 (2062)
.-+.++||||--
T Consensus 414 pLKLIIMSATLR 425 (1172)
T KOG0926|consen 414 PLKLIIMSATLR 425 (1172)
T ss_pred ceeEEEEeeeEE
Confidence 457799999953
No 214
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.38 E-value=0.7 Score=63.40 Aligned_cols=44 Identities=27% Similarity=0.441 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhhcC-C-cE-EEEcCCCChHHHHHHHHHHHHHHhcC
Q 000139 529 QHIGLDWLVTMYEKR-L-NG-ILADEMGLGKTIMTIAMLAHLACEKG 572 (2062)
Q Consensus 529 Q~~GL~WLv~l~~~~-~-gG-ILADEMGLGKTIQaIALLa~L~~~~g 572 (2062)
|...+.-|.+.+..+ . .. ||.-+.|.|||..+..|...+.|..+
T Consensus 21 Qe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~ 67 (944)
T PRK14949 21 QSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQG 67 (944)
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccC
Confidence 334444444444432 2 33 78999999999999999888877543
No 215
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=91.10 E-value=1.2 Score=60.53 Aligned_cols=158 Identities=18% Similarity=0.223 Sum_probs=93.3
Q ss_pred cHHHHHHHH----HHHHHh-----hcCCcEEEEcCCCChHHHHHHHHHHH-HHHhcCCCCcEEEEecCCcHHH-HHHHHH
Q 000139 526 REYQHIGLD----WLVTMY-----EKRLNGILADEMGLGKTIMTIAMLAH-LACEKGIWGPHLIVVPTSVMLN-WETEFL 594 (2062)
Q Consensus 526 RpYQ~~GL~----WLv~l~-----~~~~gGILADEMGLGKTIQaIALLa~-L~~~~g~~Gp~LIVvPtSLL~Q-W~~Efk 594 (2062)
-.|+..|+. |....+ ..+.|.|.+-.++-|||+.+=-+++. +.+. .+..|.+.|--.+.+ =..++.
T Consensus 214 ~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~---rr~~llilp~vsiv~Ek~~~l~ 290 (1008)
T KOG0950|consen 214 LYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR---RRNVLLILPYVSIVQEKISALS 290 (1008)
T ss_pred HHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH---hhceeEecceeehhHHHHhhhh
Confidence 456666665 333222 24678899999999999987544443 2232 235788888755554 333444
Q ss_pred HHC--CCCeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhhhh-c---cCeeEEEEcCccccCChh--h---
Q 000139 595 KWC--PAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFK-R---KKWKYLILDEAHLIKNWK--S--- 663 (2062)
Q Consensus 595 kw~--P~lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~-r---~~W~lVILDEAH~IKN~~--S--- 663 (2062)
-+. -++.|-.|+|.....+ ....-+|.|+|-+........+- . .....||+||-|.|.... .
T Consensus 291 ~~~~~~G~~ve~y~g~~~p~~-------~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE 363 (1008)
T KOG0950|consen 291 PFSIDLGFPVEEYAGRFPPEK-------RRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILE 363 (1008)
T ss_pred hhccccCCcchhhcccCCCCC-------cccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHH
Confidence 443 2577777876543221 11345688888877665543322 1 235789999999995422 1
Q ss_pred -HHHHHHHcccC--ceEEEEeccCCCCChHHHH
Q 000139 664 -QRWQTLLNFNS--KRRILLTGTPLQNDLMELW 693 (2062)
Q Consensus 664 -k~~qaL~~L~a--~~RLLLTGTPLQNsL~ELw 693 (2062)
.+.+.+..-.. -..++||+|-..|.+-.-|
T Consensus 364 ~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~ 396 (1008)
T KOG0950|consen 364 LLLAKILYENLETSVQIIGMSATIPNNSLLQDW 396 (1008)
T ss_pred HHHHHHHHhccccceeEeeeecccCChHHHHHH
Confidence 12233322222 2579999998766654433
No 216
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=91.08 E-value=1.2 Score=60.04 Aligned_cols=90 Identities=20% Similarity=0.320 Sum_probs=57.9
Q ss_pred CCeEEEEeCchHHHHHHHHHHHHcC-------CcEEEecCCCCHHHHHHHHHHHhc---CCC---ceEEEEecccccccc
Q 000139 1082 GHRALIFTQMTKMLDILEEFISLYG-------YTYMRLDGSTQPEERQTLMQRFNT---NPK---IFLFILSTRSGGVGI 1148 (2062)
Q Consensus 1082 GhKVLIFSQ~t~mLDILe~~L~~~G-------i~y~RLDGsTs~eqRq~lmerFN~---D~~---IfVfLLSTrAGG~GL 1148 (2062)
.+.+|||-.+-.++|-+..|....+ .+-+ +-+--+..+=.++|.+|.+ ++. ...|.+.-...++||
T Consensus 561 p~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l-~vEPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGl 639 (945)
T KOG1132|consen 561 PYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKL-VVEPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGL 639 (945)
T ss_pred ccceEEeccchHHHHHHHHHHHcchHHHHhhcccCc-eeccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCCC
Confidence 3449999999999998877765432 2221 2222233445567888864 221 112334445668999
Q ss_pred Cccc--CCEEEEecCCCChhhHHHHH
Q 000139 1149 NLVG--ADTVIFYDSDWNPAMDQQAQ 1172 (2062)
Q Consensus 1149 NLT~--ADtVIfyD~dWNPa~d~QA~ 1172 (2062)
+... +.-||+.-.++=|.+|.|..
T Consensus 640 DFsD~~~RaVI~tGlPyP~~~D~~V~ 665 (945)
T KOG1132|consen 640 DFSDDNGRAVIITGLPYPPVMDPRVK 665 (945)
T ss_pred CccccCCceeEEecCCCCCCCCHHHH
Confidence 9954 77889999999999987654
No 217
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=91.04 E-value=1.3 Score=61.86 Aligned_cols=85 Identities=14% Similarity=0.072 Sum_probs=60.0
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC-cHHHHHH-HH---HH
Q 000139 521 LKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS-VMLNWET-EF---LK 595 (2062)
Q Consensus 521 Lk~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtS-LL~QW~~-Ef---kk 595 (2062)
.....|++|...+..+...+..+..+++-..+|.|||+..+.-+...+. ..++++|.+|+. |..||.. ++ .+
T Consensus 242 ~~~~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~---~~~~vvi~t~t~~Lq~Ql~~~~~~~l~~ 318 (850)
T TIGR01407 242 LGLEYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI---TEKPVVISTNTKVLQSQLLEKDIPLLNE 318 (850)
T ss_pred cCCccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc---CCCeEEEEeCcHHHHHHHHHHHHHHHHH
Confidence 3466899999999988888877777888889999999877655444433 235899999985 5677644 44 44
Q ss_pred HCC-CCeEEEEeCC
Q 000139 596 WCP-AFKILTYFGS 608 (2062)
Q Consensus 596 w~P-~lkVl~y~Gs 608 (2062)
.++ .+++.+..|.
T Consensus 319 ~~~~~~~~~~~kG~ 332 (850)
T TIGR01407 319 ILNFKINAALIKGK 332 (850)
T ss_pred HcCCCceEEEEEcc
Confidence 443 3666666553
No 218
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=90.68 E-value=0.64 Score=58.23 Aligned_cols=139 Identities=19% Similarity=0.255 Sum_probs=78.1
Q ss_pred CCcEEEEcCCCChHHHHHH-HHHHHHHHhc----CCCCc-EEEEecCC-cHHHHHHHH---HHHCC-CCeEEEEeCChhh
Q 000139 543 RLNGILADEMGLGKTIMTI-AMLAHLACEK----GIWGP-HLIVVPTS-VMLNWETEF---LKWCP-AFKILTYFGSAKE 611 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaI-ALLa~L~~~~----g~~Gp-~LIVvPtS-LL~QW~~Ef---kkw~P-~lkVl~y~Gs~ke 611 (2062)
+...+--.-+|.|||..-+ -+|-.+...+ +..|| .+|+||+- |..|-...| ..+|+ .++++-...+...
T Consensus 56 gKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sd 135 (569)
T KOG0346|consen 56 GKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSD 135 (569)
T ss_pred CcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccch
Confidence 3445555669999997643 2333333222 22233 58899995 555554544 45666 4555555433332
Q ss_pred HHhhhhccCCCCCceEEEEehhhhhhchhh---hhccCeeEEEEcCccccCChhh--HHHHHHHccc-CceEEEEeccC
Q 000139 612 RKFKRQGWLKPNSFHVCITTYRLIIQDSKV---FKRKKWKYLILDEAHLIKNWKS--QRWQTLLNFN-SKRRILLTGTP 684 (2062)
Q Consensus 612 rk~~r~gw~k~~~fdVVITSYe~l~~d~~~---L~r~~W~lVILDEAH~IKN~~S--k~~qaL~~L~-a~~RLLLTGTP 684 (2062)
.... .|. .+..+|||+|...+...... .......++|+|||..+-.+.- ..-.....|. .-..+|||||-
T Consensus 136 sv~~--~~L-~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl 211 (569)
T KOG0346|consen 136 SVNS--VAL-MDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATL 211 (569)
T ss_pred HHHH--HHH-ccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHHHHHHHHHhCCchhhheeehhhh
Confidence 2211 222 25678999999888765322 2334568999999998865431 1222223332 23468888883
No 219
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=90.64 E-value=1 Score=56.54 Aligned_cols=42 Identities=14% Similarity=0.315 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhhcCC---cEEEEcCCCChHHHHHHHHHHHHHHh
Q 000139 529 QHIGLDWLVTMYEKRL---NGILADEMGLGKTIMTIAMLAHLACE 570 (2062)
Q Consensus 529 Q~~GL~WLv~l~~~~~---gGILADEMGLGKTIQaIALLa~L~~~ 570 (2062)
|..++..|...+..+. ..+|.-+.|+|||..+..+...+.|.
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~ 72 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSH 72 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 5556677777777665 35789999999999999999998873
No 220
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.44 E-value=0.99 Score=58.57 Aligned_cols=45 Identities=22% Similarity=0.311 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhhcCC-c--EEEEcCCCChHHHHHHHHHHHHHHhcC
Q 000139 528 YQHIGLDWLVTMYEKRL-N--GILADEMGLGKTIMTIAMLAHLACEKG 572 (2062)
Q Consensus 528 YQ~~GL~WLv~l~~~~~-g--GILADEMGLGKTIQaIALLa~L~~~~g 572 (2062)
.|...+..|......+. + -|+.-+.|.|||..|..++..+.|..+
T Consensus 22 GQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~ 69 (484)
T PRK14956 22 HQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENP 69 (484)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccc
Confidence 35555555555544443 2 389999999999999999888877543
No 221
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=90.35 E-value=0.66 Score=47.82 Aligned_cols=45 Identities=16% Similarity=0.127 Sum_probs=30.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHH
Q 000139 544 LNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWET 591 (2062)
Q Consensus 544 ~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~ 591 (2062)
...+|.-.+|.|||..+..++..+.... ..++++.+......|..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~ 47 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG---GGVIYIDGEDILEEVLD 47 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC---CCEEEECCEEccccCHH
Confidence 4567888899999998887776654321 25677776655554433
No 222
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=89.78 E-value=0.86 Score=56.46 Aligned_cols=60 Identities=22% Similarity=0.257 Sum_probs=41.1
Q ss_pred CcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcH
Q 000139 525 LREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVM 586 (2062)
Q Consensus 525 LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL 586 (2062)
.--||..+++-|+. ..-.-..|.-..|.|||+-|+|.-.+.-..++...+++|-=|..-+
T Consensus 229 rn~eQ~~ALdlLld--~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpv 288 (436)
T COG1875 229 RNAEQRVALDLLLD--DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPV 288 (436)
T ss_pred ccHHHHHHHHHhcC--CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCc
Confidence 45799999988764 2223346777899999999988776655556666665555555433
No 223
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=89.36 E-value=1.8 Score=59.71 Aligned_cols=134 Identities=18% Similarity=0.103 Sum_probs=72.3
Q ss_pred HHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCc-----HHHHHHHHHHHCCCCeEEEEeCChh
Q 000139 536 LVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSV-----MLNWETEFLKWCPAFKILTYFGSAK 610 (2062)
Q Consensus 536 Lv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSL-----L~QW~~Efkkw~P~lkVl~y~Gs~k 610 (2062)
++....++.-.||.-++|.|||-|.=-++..... +..|.+.+.=|--+ -.-=..|+..-.+..--+.......
T Consensus 58 i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRfe~~ 135 (845)
T COG1643 58 ILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFESK 135 (845)
T ss_pred HHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEeecc
Confidence 4445556778899999999999998777765432 33334444346543 2223333322222111111111111
Q ss_pred hHHhhhhccCCCCCceEEEEehhhhhhchh-hhhccCeeEEEEcCccccCChhhHHHHHH--------HcccC-ceEEEE
Q 000139 611 ERKFKRQGWLKPNSFHVCITTYRLIIQDSK-VFKRKKWKYLILDEAHLIKNWKSQRWQTL--------LNFNS-KRRILL 680 (2062)
Q Consensus 611 erk~~r~gw~k~~~fdVVITSYe~l~~d~~-~L~r~~W~lVILDEAH~IKN~~Sk~~qaL--------~~L~a-~~RLLL 680 (2062)
....-.|-++|-.++.+... ...-.++++||+||+|.= |..+..+ ...+. -+.+++
T Consensus 136 ----------~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHER----Sl~tDilLgllk~~~~~rr~DLKiIim 201 (845)
T COG1643 136 ----------VSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHER----SLNTDILLGLLKDLLARRRDDLKLIIM 201 (845)
T ss_pred ----------CCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhh----hHHHHHHHHHHHHHHhhcCCCceEEEE
Confidence 11234577778888876643 222356899999999952 2222222 22232 367889
Q ss_pred eccCC
Q 000139 681 TGTPL 685 (2062)
Q Consensus 681 TGTPL 685 (2062)
|||-=
T Consensus 202 SATld 206 (845)
T COG1643 202 SATLD 206 (845)
T ss_pred ecccC
Confidence 99953
No 224
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=89.32 E-value=5.6 Score=51.39 Aligned_cols=144 Identities=15% Similarity=0.172 Sum_probs=103.4
Q ss_pred cccchHHHHHH-HHHHhh--hCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEE
Q 000139 1063 FDCGKLQELAI-LLRKLK--SDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFIL 1139 (2062)
Q Consensus 1063 ~dSGKLq~L~~-LLrkLk--s~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLL 1139 (2062)
.+..++..... +|..+. ....++|||...---.-.|..+|+..++.|+.+...|+..+-..+-..|.. ++..+||.
T Consensus 278 ~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~-G~~~iLL~ 356 (442)
T PF06862_consen 278 DPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFH-GRKPILLY 356 (442)
T ss_pred hhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHc-CCceEEEE
Confidence 34456666655 666666 334789999876655666889999999999999999999999999999986 67888888
Q ss_pred eccccc-cccCcccCCEEEEecCCCChhhHHHHHHhhhccCC----cCcEEEEEEEeCC-C-HHHHHHHHHHHHH
Q 000139 1140 STRSGG-VGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQ----TREVHIYRLISES-T-IEENILKKANQKR 1207 (2062)
Q Consensus 1140 STrAGG-~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQ----TRdV~VYRLIse~-T-IEE~Ilkka~qKr 1207 (2062)
|-|.-= .=..+.|+.+||||-||-||.....-+.-...-.+ ..+..|.-|.++- . -=|+|.-....++
T Consensus 357 TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVGt~ra~~ 431 (442)
T PF06862_consen 357 TERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVGTERASK 431 (442)
T ss_pred EhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhCHHHHHH
Confidence 877542 34567899999999999999988877755544332 3456666666653 2 2345554444333
No 225
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=89.11 E-value=2.3 Score=60.04 Aligned_cols=85 Identities=20% Similarity=0.179 Sum_probs=56.3
Q ss_pred CCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHH--HHHH---HHHH
Q 000139 522 KFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLN--WETE---FLKW 596 (2062)
Q Consensus 522 k~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~Q--W~~E---fkkw 596 (2062)
....||-|..-.+.+...+..+...++=..+|.|||+--+.-+...+. ...+|++|-+++..+.+ +..+ +++-
T Consensus 255 ~~e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~--~~~~~vvIsT~T~~LQ~Ql~~kDiP~L~~~ 332 (928)
T PRK08074 255 KYEKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAK--KKEEPVVISTYTIQLQQQLLEKDIPLLQKI 332 (928)
T ss_pred CCcCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhh--ccCCeEEEEcCCHHHHHHHHHhhHHHHHHH
Confidence 357899999999999888887777777778999999866443333332 22357777778755443 4444 3454
Q ss_pred CC-CCeEEEEeCC
Q 000139 597 CP-AFKILTYFGS 608 (2062)
Q Consensus 597 ~P-~lkVl~y~Gs 608 (2062)
+| .+++.+..|.
T Consensus 333 ~~~~~~~~~lKGr 345 (928)
T PRK08074 333 FPFPVEAALLKGR 345 (928)
T ss_pred cCCCceEEEEEcc
Confidence 44 4566655553
No 226
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=88.98 E-value=1.9 Score=58.42 Aligned_cols=110 Identities=19% Similarity=0.318 Sum_probs=81.6
Q ss_pred HHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccccccc
Q 000139 1069 QELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGI 1148 (2062)
Q Consensus 1069 q~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GL 1148 (2062)
.....|+..| ..|++|.|||....+.++++.++...+..++.+.|..+..+. +. =.+..|+|-+| +..+||
T Consensus 270 tF~~~L~~~L-~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~---W~~~~VviYT~-~itvG~ 340 (824)
T PF02399_consen 270 TFFSELLARL-NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ES---WKKYDVVIYTP-VITVGL 340 (824)
T ss_pred hHHHHHHHHH-hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----cc---ccceeEEEEec-eEEEEe
Confidence 3445555555 468899999999999999999999999999999988775522 22 35677876654 777888
Q ss_pred Cccc--CCEEEEe--cCCCChhh--HHHHHHhhhccCCcCcEEEEE
Q 000139 1149 NLVG--ADTVIFY--DSDWNPAM--DQQAQDRCHRIGQTREVHIYR 1188 (2062)
Q Consensus 1149 NLT~--ADtVIfy--D~dWNPa~--d~QA~gRahRIGQTRdV~VYR 1188 (2062)
++-. -|.|+.| ....-|.| -.|.+||+..++. +++.||.
T Consensus 341 Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~-~ei~v~~ 385 (824)
T PF02399_consen 341 SFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLD-NEIYVYI 385 (824)
T ss_pred ccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhcc-CeEEEEE
Confidence 8853 6778777 33445666 4899999999884 5666664
No 227
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=88.85 E-value=1.6 Score=60.53 Aligned_cols=44 Identities=23% Similarity=0.251 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhhcCC--c-EEEEcCCCChHHHHHHHHHHHHHHhcC
Q 000139 529 QHIGLDWLVTMYEKRL--N-GILADEMGLGKTIMTIAMLAHLACEKG 572 (2062)
Q Consensus 529 Q~~GL~WLv~l~~~~~--g-GILADEMGLGKTIQaIALLa~L~~~~g 572 (2062)
|...+.-|.+.+..+. . -||.-..|+|||..+..|...|.|..+
T Consensus 20 qe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~ 66 (824)
T PRK07764 20 QEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEG 66 (824)
T ss_pred cHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccC
Confidence 3333444444444322 3 478999999999999999999988643
No 228
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.62 E-value=1.9 Score=57.77 Aligned_cols=42 Identities=21% Similarity=0.278 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhcCC---cEEEEcCCCChHHHHHHHHHHHHHHhc
Q 000139 530 HIGLDWLVTMYEKRL---NGILADEMGLGKTIMTIAMLAHLACEK 571 (2062)
Q Consensus 530 ~~GL~WLv~l~~~~~---gGILADEMGLGKTIQaIALLa~L~~~~ 571 (2062)
...+..|.+.+..+. ..||.-..|.|||..|.++...+.|..
T Consensus 21 e~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~ 65 (702)
T PRK14960 21 NHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCET 65 (702)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 333444444444432 338899999999999988888887754
No 229
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=88.53 E-value=2.3 Score=51.11 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=19.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHH
Q 000139 545 NGILADEMGLGKTIMTIAMLAHLA 568 (2062)
Q Consensus 545 gGILADEMGLGKTIQaIALLa~L~ 568 (2062)
+.||.-..|.|||..|-++...+.
T Consensus 44 ~vll~GppGtGKTtlA~~ia~~l~ 67 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILGKLFK 67 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHH
Confidence 458999999999998877766553
No 230
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=88.51 E-value=3.9 Score=54.87 Aligned_cols=148 Identities=16% Similarity=0.205 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC-cHHHHHHH----HH-----HH
Q 000139 527 EYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS-VMLNWETE----FL-----KW 596 (2062)
Q Consensus 527 pYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtS-LL~QW~~E----fk-----kw 596 (2062)
|+=..-++-+...|.++...++++ =|-|||-.+..++.++....+ -.++|++|.. ....-... +. .|
T Consensus 172 ~~~~~~id~~~~~fkq~~tV~taP-RqrGKS~iVgi~l~~La~f~G--i~IlvTAH~~~ts~evF~rv~~~le~lg~~~~ 248 (752)
T PHA03333 172 PRTLREIDRIFDEYGKCYTAATVP-RRCGKTTIMAIILAAMISFLE--IDIVVQAQRKTMCLTLYNRVETVVHAYQHKPW 248 (752)
T ss_pred hhhHHHHHHHHHHHhhcceEEEec-cCCCcHHHHHHHHHHHHHhcC--CeEEEECCChhhHHHHHHHHHHHHHHhccccc
Confidence 444556788889999998888887 999999988877777765334 3678888853 22222222 22 56
Q ss_pred CCCC-eEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHc-cc-
Q 000139 597 CPAF-KILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLN-FN- 673 (2062)
Q Consensus 597 ~P~l-kVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~-L~- 673 (2062)
+|.. ++..+.|....-. |..++...+-=++-....+.....+...+++||+|||+.|.. ..+.++.- +.
T Consensus 249 fp~~~~iv~vkgg~E~I~-----f~~p~gak~G~sti~F~Ars~~s~RG~~~DLLIVDEAAfI~~---~~l~aIlP~l~~ 320 (752)
T PHA03333 249 FPEEFKIVTLKGTDENLE-----YISDPAAKEGKTTAHFLASSPNAARGQNPDLVIVDEAAFVNP---GALLSVLPLMAV 320 (752)
T ss_pred cCCCceEEEeeCCeeEEE-----EecCcccccCcceeEEecccCCCcCCCCCCEEEEECcccCCH---HHHHHHHHHHcc
Confidence 6643 2222222211000 000000000000000111122334556789999999999976 22333322 22
Q ss_pred CceEEEEeccCC
Q 000139 674 SKRRILLTGTPL 685 (2062)
Q Consensus 674 a~~RLLLTGTPL 685 (2062)
...++.+.-||.
T Consensus 321 ~~~k~IiISS~~ 332 (752)
T PHA03333 321 KGTKQIHISSPV 332 (752)
T ss_pred CCCceEEEeCCC
Confidence 356666666665
No 231
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=88.51 E-value=3 Score=57.18 Aligned_cols=44 Identities=16% Similarity=0.072 Sum_probs=31.2
Q ss_pred CCCcHHHHHHHHHHHHHhhcC-----CcEEEEcCCCChHHHHHHHHHHH
Q 000139 523 FPLREYQHIGLDWLVTMYEKR-----LNGILADEMGLGKTIMTIAMLAH 566 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~-----~gGILADEMGLGKTIQaIALLa~ 566 (2062)
+.-|+-|..-..-+...+... ...++=..+|.|||+--+.-...
T Consensus 24 ~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~ 72 (697)
T PRK11747 24 FIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIP 72 (697)
T ss_pred CCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHH
Confidence 567999999998888877653 33445557999999865433333
No 232
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=88.40 E-value=1.6 Score=60.15 Aligned_cols=144 Identities=17% Similarity=0.129 Sum_probs=81.9
Q ss_pred CcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEe--cC--C--cHHHHHHHHHHHCC
Q 000139 525 LREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVV--PT--S--VMLNWETEFLKWCP 598 (2062)
Q Consensus 525 LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVv--Pt--S--LL~QW~~Efkkw~P 598 (2062)
-..++..-++- +.++...++.-|+|.|||.|+--+|.......+ ++.=||| |. + -+.+|...=.-+.+
T Consensus 174 a~~~r~~Il~~----i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~--~~~~IicTQPRRIsAIsvAeRVa~ER~~~~ 247 (924)
T KOG0920|consen 174 AYKMRDTILDA----IEENQVVVISGETGCGKTTQVPQFILDEAIESG--AACNIICTQPRRISAISVAERVAKERGESL 247 (924)
T ss_pred cHHHHHHHHHH----HHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC--CCCeEEecCCchHHHHHHHHHHHHHhcccc
Confidence 35555555543 345778899999999999999999998776666 3333555 44 1 23444332122323
Q ss_pred CCeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhh-hhccCeeEEEEcCccccCChhhHH-HHHHH---cc-
Q 000139 599 AFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKV-FKRKKWKYLILDEAHLIKNWKSQR-WQTLL---NF- 672 (2062)
Q Consensus 599 ~lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~-L~r~~W~lVILDEAH~IKN~~Sk~-~qaL~---~L- 672 (2062)
+ ..+-|.-.-..+ ....-.+..+|+..+.+.... -.......||+||+|-= ...+-. -..++ ..
T Consensus 248 g-~~VGYqvrl~~~--------~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER-~i~~DflLi~lk~lL~~~ 317 (924)
T KOG0920|consen 248 G-EEVGYQVRLESK--------RSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHER-SINTDFLLILLKDLLPRN 317 (924)
T ss_pred C-CeeeEEEeeecc--------cCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEc-cCCcccHHHHHHHHhhhC
Confidence 3 333332111111 112245778888888765432 12235789999999953 222222 12222 22
Q ss_pred cCceEEEEeccC
Q 000139 673 NSKRRILLTGTP 684 (2062)
Q Consensus 673 ~a~~RLLLTGTP 684 (2062)
+.-+.+|||||-
T Consensus 318 p~LkvILMSAT~ 329 (924)
T KOG0920|consen 318 PDLKVILMSATL 329 (924)
T ss_pred CCceEEEeeeec
Confidence 334789999994
No 233
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=88.30 E-value=3.4 Score=55.73 Aligned_cols=43 Identities=23% Similarity=0.304 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhhcCC--c-EEEEcCCCChHHHHHHHHHHHHHHhc
Q 000139 529 QHIGLDWLVTMYEKRL--N-GILADEMGLGKTIMTIAMLAHLACEK 571 (2062)
Q Consensus 529 Q~~GL~WLv~l~~~~~--g-GILADEMGLGKTIQaIALLa~L~~~~ 571 (2062)
|...+..|.+.+..+. . .|+.-..|.|||..+..|...+.|..
T Consensus 21 Qe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~ 66 (647)
T PRK07994 21 QEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCET 66 (647)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhcc
Confidence 4444555555555443 2 47899999999999999999998864
No 234
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=87.83 E-value=1.7 Score=58.94 Aligned_cols=76 Identities=18% Similarity=0.214 Sum_probs=58.2
Q ss_pred CCcHHHHHHHHHHHHHhhcCC-cEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC-cHHHHHHHHHHHCCCCe
Q 000139 524 PLREYQHIGLDWLVTMYEKRL-NGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS-VMLNWETEFLKWCPAFK 601 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~-gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtS-LL~QW~~Efkkw~P~lk 601 (2062)
.....|-.++.-|+.....+. .-+|.--+|.|||+++..++..+ ..|+|||+|.- +..||..+|+.|+|...
T Consensus 9 ~~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a~~~~~~------~~p~Lvi~~n~~~A~ql~~el~~f~p~~~ 82 (655)
T TIGR00631 9 QPAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMANVIAQV------NRPTLVIAHNKTLAAQLYNEFKEFFPENA 82 (655)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHHHHHHHh------CCCEEEEECCHHHHHHHHHHHHHhCCCCe
Confidence 456689999998888776553 44567779999999987776543 24999999985 66789999999998755
Q ss_pred EEEE
Q 000139 602 ILTY 605 (2062)
Q Consensus 602 Vl~y 605 (2062)
|..|
T Consensus 83 V~~f 86 (655)
T TIGR00631 83 VEYF 86 (655)
T ss_pred EEEE
Confidence 5444
No 235
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=87.80 E-value=6.2 Score=50.45 Aligned_cols=131 Identities=12% Similarity=0.083 Sum_probs=70.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHhcC-CCCcEEEEecCC--cHHHHHHHHHHHCCCCeEEEEeCChhhHHhhhhccCC
Q 000139 545 NGILADEMGLGKTIMTIAMLAHLACEKG-IWGPHLIVVPTS--VMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLK 621 (2062)
Q Consensus 545 gGILADEMGLGKTIQaIALLa~L~~~~g-~~Gp~LIVvPtS--LL~QW~~Efkkw~P~lkVl~y~Gs~kerk~~r~gw~k 621 (2062)
..+|.-.+|.|||.++.-+.+++....+ ..+++++|.=.. .-..|+ ++.|+-.+.+-+
T Consensus 176 vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ--L~~~a~~lgvpv----------------- 236 (388)
T PRK12723 176 VFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ--IQTYGDIMGIPV----------------- 236 (388)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH--HHHHhhcCCcce-----------------
Confidence 3467888999999877666555543221 123455554332 222233 555653222211
Q ss_pred CCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhh---HHHHHHHccc--CceEEEEeccCCCCChHHHHHHH
Q 000139 622 PNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKS---QRWQTLLNFN--SKRRILLTGTPLQNDLMELWSLM 696 (2062)
Q Consensus 622 ~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~S---k~~qaL~~L~--a~~RLLLTGTPLQNsL~ELwSLL 696 (2062)
.++.+|..+......+ ...++||||++.+...... .....+.... ....|.|+||-=++.+.+.+.-+
T Consensus 237 -----~~~~~~~~l~~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~ 309 (388)
T PRK12723 237 -----KAIESFKDLKEEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQF 309 (388)
T ss_pred -----EeeCcHHHHHHHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHh
Confidence 1122333333322222 4579999999998754322 2222333333 24678999998888888777655
Q ss_pred HHhCC
Q 000139 697 HFLMP 701 (2062)
Q Consensus 697 ~FL~P 701 (2062)
..+.+
T Consensus 310 ~~~~~ 314 (388)
T PRK12723 310 SPFSY 314 (388)
T ss_pred cCCCC
Confidence 54433
No 236
>PLN03025 replication factor C subunit; Provisional
Probab=87.71 E-value=5 Score=49.71 Aligned_cols=41 Identities=24% Similarity=0.220 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHHH
Q 000139 529 QHIGLDWLVTMYEKR--LNGILADEMGLGKTIMTIAMLAHLAC 569 (2062)
Q Consensus 529 Q~~GL~WLv~l~~~~--~gGILADEMGLGKTIQaIALLa~L~~ 569 (2062)
|...+.+|......+ .+-||.-..|.|||..+.++...+.+
T Consensus 18 ~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~ 60 (319)
T PLN03025 18 NEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG 60 (319)
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhc
Confidence 344444544433332 24688999999999999888877754
No 237
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=87.33 E-value=4.1 Score=55.14 Aligned_cols=43 Identities=23% Similarity=0.322 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhhcCC---cEEEEcCCCChHHHHHHHHHHHHHHhc
Q 000139 529 QHIGLDWLVTMYEKRL---NGILADEMGLGKTIMTIAMLAHLACEK 571 (2062)
Q Consensus 529 Q~~GL~WLv~l~~~~~---gGILADEMGLGKTIQaIALLa~L~~~~ 571 (2062)
|...+..|...+..+. +-||.-..|+|||..+.+|...+.|..
T Consensus 21 Qe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~ 66 (709)
T PRK08691 21 QEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCEN 66 (709)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccC
Confidence 4444445554444433 348899999999999999988887754
No 238
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.22 E-value=4.7 Score=54.20 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=22.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHh
Q 000139 546 GILADEMGLGKTIMTIAMLAHLACE 570 (2062)
Q Consensus 546 GILADEMGLGKTIQaIALLa~L~~~ 570 (2062)
-||.-..|+|||..+..|...+.|.
T Consensus 41 ~LFtGP~GvGKTTLAriLAkaLnC~ 65 (700)
T PRK12323 41 YLFTGTRGVGKTTLSRILAKSLNCT 65 (700)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3789999999999999999888874
No 239
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=87.10 E-value=4.7 Score=56.24 Aligned_cols=81 Identities=16% Similarity=0.131 Sum_probs=54.7
Q ss_pred CCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHH--HHHHH---HHH
Q 000139 522 KFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLN--WETEF---LKW 596 (2062)
Q Consensus 522 k~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~Q--W~~Ef---kkw 596 (2062)
....|+-|..-..-+...+..+...++-..+|.|||+.-+.-+. ... ...+++|.+|+..+.+ +..++ .++
T Consensus 243 ~~e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l--~~~--~~~~vvI~t~T~~Lq~Ql~~~~i~~l~~~ 318 (820)
T PRK07246 243 GLEERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLL--AQS--DQRQIIVSVPTKILQDQIMAEEVKAIQEV 318 (820)
T ss_pred CCccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHH--Hhc--CCCcEEEEeCcHHHHHHHHHHHHHHHHHh
Confidence 36789999999999888888777777888999999976543322 111 2358999999976554 33444 444
Q ss_pred CCCCeEEEEeC
Q 000139 597 CPAFKILTYFG 607 (2062)
Q Consensus 597 ~P~lkVl~y~G 607 (2062)
+ ++++.+..|
T Consensus 319 ~-~~~~~~~kg 328 (820)
T PRK07246 319 F-HIDCHSLKG 328 (820)
T ss_pred c-CCcEEEEEC
Confidence 3 344544443
No 240
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=86.85 E-value=0.68 Score=59.67 Aligned_cols=48 Identities=23% Similarity=0.461 Sum_probs=43.6
Q ss_pred CCCCChhhhHHHHHHHHhcCC-CchhHHHHhhccccCccccccccCChhhHHHHHHHHH
Q 000139 1660 PDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQ 1717 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~ 1717 (2062)
+..||++||..|.||..-.|= ||.+|+.-| |+-|+.-||-+||++.+.
T Consensus 253 k~~WS~EE~E~L~AiA~A~~~~~W~~IA~~L----------gt~RS~yQC~~kF~t~~~ 301 (939)
T KOG0049|consen 253 KEHWSNEEVEKLKALAEAPKFVSWPMIALNL----------GTNRSSYQCMEKFKTEVS 301 (939)
T ss_pred hhccChHHHHHHHHHHhccccccHHHHHHHh----------CCCcchHHHHHHHHHHHH
Confidence 789999999999999999996 999999977 788999999999987653
No 241
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.80 E-value=3.6 Score=56.50 Aligned_cols=97 Identities=14% Similarity=0.200 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhhh-CCCeEEEEeCchHHHHHHHHHHHHcCC-------cEEEecCCCCHHHHHHHHHHHhcC--CCceEE
Q 000139 1068 LQELAILLRKLKS-DGHRALIFTQMTKMLDILEEFISLYGY-------TYMRLDGSTQPEERQTLMQRFNTN--PKIFLF 1137 (2062)
Q Consensus 1068 Lq~L~~LLrkLks-~GhKVLIFSQ~t~mLDILe~~L~~~Gi-------~y~RLDGsTs~eqRq~lmerFN~D--~~IfVf 1137 (2062)
+..|..+|.++.. -...+|||...-..|+.+...+...|+ ..+.+-+.. ..++..++++|... ..--.+
T Consensus 507 ~~~l~~~i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~-~~~~~~~l~~f~~~~~~~~gav 585 (705)
T TIGR00604 507 VRNLGELLVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKD-AQETSDALERYKQAVSEGRGAV 585 (705)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCC-cchHHHHHHHHHHHHhcCCceE
Confidence 3455555555533 356788887777777777766654432 223333332 25789999999752 111224
Q ss_pred EEec--cccccccCccc--CCEEEEecCCC-Ch
Q 000139 1138 ILST--RSGGVGINLVG--ADTVIFYDSDW-NP 1165 (2062)
Q Consensus 1138 LLST--rAGG~GLNLT~--ADtVIfyD~dW-NP 1165 (2062)
|+++ ...++|||+.+ +..||++-.|+ ||
T Consensus 586 L~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~ 618 (705)
T TIGR00604 586 LLSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYT 618 (705)
T ss_pred EEEecCCcccCccccCCCCCcEEEEEccCCCCC
Confidence 5555 57789999987 78999998877 44
No 242
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=86.76 E-value=1.7 Score=60.41 Aligned_cols=111 Identities=22% Similarity=0.254 Sum_probs=76.5
Q ss_pred HHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcH-----HHHHHHHHHHCCCCeEEEEeCChhhH
Q 000139 538 TMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVM-----LNWETEFLKWCPAFKILTYFGSAKER 612 (2062)
Q Consensus 538 ~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL-----~QW~~Efkkw~P~lkVl~y~Gs~ker 612 (2062)
.+|+.+.+.+++...|.|||+++=-.+.. ....+...-++|...+ .-|..-|.+- .++.++...|...-.
T Consensus 1154 ~~y~~nd~v~vga~~gsgkt~~ae~a~l~----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~-~G~~~~~l~ge~s~~ 1228 (1674)
T KOG0951|consen 1154 SLYNTNDNVLVGAPNGSGKTACAELALLR----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL-LGLRIVKLTGETSLD 1228 (1674)
T ss_pred eeecccceEEEecCCCCchhHHHHHHhcC----CccceEEEEecchHHHHHHHHHHHHHhhccc-cCceEEecCCccccc
Confidence 34566788999999999999876433332 3345678888998644 4488888776 677777777765433
Q ss_pred HhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChh
Q 000139 613 KFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWK 662 (2062)
Q Consensus 613 k~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~ 662 (2062)
.... ..-+|+|.|++.+-.-. .. -.-++.|+||.|.|....
T Consensus 1229 lkl~------~~~~vii~tpe~~d~lq-~i--Q~v~l~i~d~lh~igg~~ 1269 (1674)
T KOG0951|consen 1229 LKLL------QKGQVIISTPEQWDLLQ-SI--QQVDLFIVDELHLIGGVY 1269 (1674)
T ss_pred hHHh------hhcceEEechhHHHHHh-hh--hhcceEeeehhhhhcccC
Confidence 2221 24469999988765442 22 246899999999998644
No 243
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=86.60 E-value=5.3 Score=50.00 Aligned_cols=51 Identities=22% Similarity=0.173 Sum_probs=35.9
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHh-h--cCCcEEEEcCCCChHHHHHHHHHHHHHH
Q 000139 517 FPFLLKFPLREYQHIGLDWLVTMY-E--KRLNGILADEMGLGKTIMTIAMLAHLAC 569 (2062)
Q Consensus 517 vP~lLk~~LRpYQ~~GL~WLv~l~-~--~~~gGILADEMGLGKTIQaIALLa~L~~ 569 (2062)
+|..+.+ |+.|+..+.-.+... . ...+.+|.-..|.|||..+-+++..+..
T Consensus 13 ~p~~l~g--Re~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 13 VPDRIVH--RDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred CCCCCCC--cHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4444433 899998887554432 2 2346688999999999999888887754
No 244
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=86.34 E-value=3.8 Score=47.58 Aligned_cols=44 Identities=23% Similarity=0.138 Sum_probs=28.2
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHH
Q 000139 542 KRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNW 589 (2062)
Q Consensus 542 ~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW 589 (2062)
...+.+|.-+.|.|||..+.++...... . +..++.+....+..|
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~-~---~~~~~~i~~~~~~~~ 80 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEE-R---GKSAIYLPLAELAQA 80 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHh-c---CCcEEEEeHHHHHHh
Confidence 3445678899999999998877665543 2 233455555444444
No 245
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.91 E-value=5.8 Score=52.45 Aligned_cols=44 Identities=25% Similarity=0.400 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhcCC--c-EEEEcCCCChHHHHHHHHHHHHHHhcC
Q 000139 529 QHIGLDWLVTMYEKRL--N-GILADEMGLGKTIMTIAMLAHLACEKG 572 (2062)
Q Consensus 529 Q~~GL~WLv~l~~~~~--g-GILADEMGLGKTIQaIALLa~L~~~~g 572 (2062)
|...+..|.+.+..+. . -|+.-..|.|||..+..+...+.|..+
T Consensus 21 q~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~ 67 (509)
T PRK14958 21 QAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKG 67 (509)
T ss_pred CHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCC
Confidence 4555556665554432 3 378999999999999998888887543
No 246
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=85.43 E-value=5.6 Score=47.95 Aligned_cols=66 Identities=26% Similarity=0.384 Sum_probs=45.5
Q ss_pred CcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHH
Q 000139 525 LREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEF 593 (2062)
Q Consensus 525 LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Ef 593 (2062)
+.-.+...+.-++..+.++.|.+|.-.+|.|||..++|+...+. ..|. ++++|.=+.++.++...+
T Consensus 87 ~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~--sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 87 IDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-KAGI--SVLFITAPDLLSKLKAAF 152 (254)
T ss_pred hhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-HcCC--eEEEEEHHHHHHHHHHHH
Confidence 45556666665665666788889999999999999999888876 4443 455554444555555443
No 247
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=85.16 E-value=3.6 Score=49.15 Aligned_cols=43 Identities=21% Similarity=0.257 Sum_probs=28.3
Q ss_pred CcHHHHHHHHHHHHHhhcCC-cEEEEcCCCChHHHHHHHHHHHH
Q 000139 525 LREYQHIGLDWLVTMYEKRL-NGILADEMGLGKTIMTIAMLAHL 567 (2062)
Q Consensus 525 LRpYQ~~GL~WLv~l~~~~~-gGILADEMGLGKTIQaIALLa~L 567 (2062)
.-+.+..++..+......+. ..+|.-+.|.|||..+-.++..+
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhc
Confidence 34555666666654444444 36789999999998777665544
No 248
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=85.14 E-value=1.7 Score=57.94 Aligned_cols=171 Identities=16% Similarity=0.117 Sum_probs=102.8
Q ss_pred cCCCCCCCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC-cHHHHHHH-H
Q 000139 516 KFPFLLKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS-VMLNWETE-F 593 (2062)
Q Consensus 516 ~vP~lLk~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtS-LL~QW~~E-f 593 (2062)
..|...+....|||++-++-|-... -....+.--.-+|||...+.+|.+... ...+|+|+|.|+- ....|..+ |
T Consensus 8 ~~pG~w~~~~~Py~~eimd~~~~~~--v~~Vv~~k~aQ~GkT~~~~n~~g~~i~--~~P~~~l~v~Pt~~~a~~~~~~rl 83 (557)
T PF05876_consen 8 AEPGPWRTDRTPYLREIMDALSDPS--VREVVVMKSAQVGKTELLLNWIGYSID--QDPGPMLYVQPTDDAAKDFSKERL 83 (557)
T ss_pred CCCCCCCCCCChhHHHHHHhcCCcC--ccEEEEEEcchhhHhHHHHhhceEEEE--eCCCCEEEEEEcHHHHHHHHHHHH
Confidence 4566667788999999988765422 334566777889999988888777654 3458999999995 56667643 4
Q ss_pred HH---HCCCCeEEEEeCC-hhhHHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccC----C---hh
Q 000139 594 LK---WCPAFKILTYFGS-AKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIK----N---WK 662 (2062)
Q Consensus 594 kk---w~P~lkVl~y~Gs-~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IK----N---~~ 662 (2062)
.. -+|.++-.+.... ...........+. ++ .+.+.... ....|+....++||+||.-.+- + +-
T Consensus 84 ~Pmi~~sp~l~~~~~~~~~~~~~~t~~~k~f~-gg-~l~~~ga~----S~~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~ 157 (557)
T PF05876_consen 84 DPMIRASPVLRRKLSPSKSRDSGNTILYKRFP-GG-FLYLVGAN----SPSNLRSRPARYLLLDEVDRYPDDVGGEGDPV 157 (557)
T ss_pred HHHHHhCHHHHHHhCchhhcccCCchhheecC-CC-EEEEEeCC----CCcccccCCcCEEEEechhhccccCccCCCHH
Confidence 32 3454442222200 0000000000011 12 23333322 2345777889999999999883 2 33
Q ss_pred hHHHHHHHcccCceEEEEeccCCCCChHHHHHHH
Q 000139 663 SQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLM 696 (2062)
Q Consensus 663 Sk~~qaL~~L~a~~RLLLTGTPLQNsL~ELwSLL 696 (2062)
.........+....++++..||......-++.++
T Consensus 158 ~la~~R~~tf~~~~K~~~~STPt~~~~~~I~~~~ 191 (557)
T PF05876_consen 158 ELAEKRTKTFGSNRKILRISTPTIEGTSRIERLY 191 (557)
T ss_pred HHHHHHHhhhccCcEEEEeCCCCCCCCCHHHHHH
Confidence 4444445556677899999999987544444433
No 249
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=84.79 E-value=2.7 Score=55.61 Aligned_cols=134 Identities=20% Similarity=0.123 Sum_probs=72.6
Q ss_pred HHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCc-----HHHHHHHHHHHCCCCeEEEEeCCh
Q 000139 535 WLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSV-----MLNWETEFLKWCPAFKILTYFGSA 609 (2062)
Q Consensus 535 WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSL-----L~QW~~Efkkw~P~lkVl~y~Gs~ 609 (2062)
-++...+++.-.|+.-|+|.|||-|.=-+|..... ...|.+-+.=|.-+ -..=..|+.--. +- -+-|.-
T Consensus 58 ~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~--~~~g~I~~TQPRRVAavslA~RVAeE~~~~l-G~-~VGY~I-- 131 (674)
T KOG0922|consen 58 QILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGF--ASSGKIACTQPRRVAAVSLAKRVAEEMGCQL-GE-EVGYTI-- 131 (674)
T ss_pred HHHHHHHHCCEEEEEcCCCCCccccHhHHHHhccc--ccCCcEEeecCchHHHHHHHHHHHHHhCCCc-Cc-eeeeEE--
Confidence 35555567888999999999999998777654321 22344333336533 222333332211 11 111211
Q ss_pred hhHHhhhhccCCCCCceEEEEehhhhhhchhhh-hccCeeEEEEcCccccCChhhHHHHHHHc----c---cCc-eEEEE
Q 000139 610 KERKFKRQGWLKPNSFHVCITTYRLIIQDSKVF-KRKKWKYLILDEAHLIKNWKSQRWQTLLN----F---NSK-RRILL 680 (2062)
Q Consensus 610 kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L-~r~~W~lVILDEAH~IKN~~Sk~~qaL~~----L---~a~-~RLLL 680 (2062)
|-.-.....-.|...|-.++.+..-.- .-.++.+|||||||-= |..+..|+. + +.. +.+++
T Consensus 132 ------RFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHER----sl~TDiLlGlLKki~~~R~~LklIim 201 (674)
T KOG0922|consen 132 ------RFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHER----SLHTDILLGLLKKILKKRPDLKLIIM 201 (674)
T ss_pred ------EecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhh----hhHHHHHHHHHHHHHhcCCCceEEEE
Confidence 000111123457788888887764211 1246899999999952 333333332 2 333 67889
Q ss_pred eccC
Q 000139 681 TGTP 684 (2062)
Q Consensus 681 TGTP 684 (2062)
|||-
T Consensus 202 SATl 205 (674)
T KOG0922|consen 202 SATL 205 (674)
T ss_pred eeee
Confidence 9983
No 250
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=84.56 E-value=2.6 Score=52.02 Aligned_cols=40 Identities=18% Similarity=0.103 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhcCC--cEEEEcCCCChHHHHHHHHHHHHHH
Q 000139 530 HIGLDWLVTMYEKRL--NGILADEMGLGKTIMTIAMLAHLAC 569 (2062)
Q Consensus 530 ~~GL~WLv~l~~~~~--gGILADEMGLGKTIQaIALLa~L~~ 569 (2062)
...+.+|......+. +.+|.-+.|.|||..+.++...+.+
T Consensus 21 ~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 21 DEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred HHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 334555555555454 5688999999999999888877754
No 251
>PRK08181 transposase; Validated
Probab=84.09 E-value=7.4 Score=47.37 Aligned_cols=45 Identities=20% Similarity=0.084 Sum_probs=32.9
Q ss_pred CcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHH
Q 000139 525 LREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLAC 569 (2062)
Q Consensus 525 LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~ 569 (2062)
+-.-|...+.++-.....+.|.+|.-..|.|||..+.++...+..
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~ 132 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIE 132 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHH
Confidence 566777777544333345778899999999999999888766543
No 252
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=84.03 E-value=3.3 Score=56.26 Aligned_cols=78 Identities=21% Similarity=0.254 Sum_probs=60.4
Q ss_pred CCCCcHHHHHHHHHHHHHhhcCC-cEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC-cHHHHHHHHHHHCCC
Q 000139 522 KFPLREYQHIGLDWLVTMYEKRL-NGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS-VMLNWETEFLKWCPA 599 (2062)
Q Consensus 522 k~~LRpYQ~~GL~WLv~l~~~~~-gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtS-LL~QW~~Efkkw~P~ 599 (2062)
.+.|.++|...+.-+......+. +.+|.--.|.|||+.+.+++..+ ..|+|||+|.. ...+|..+|..|+|.
T Consensus 10 ~~~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia~l~~~~------~r~vLIVt~~~~~A~~l~~dL~~~~~~ 83 (652)
T PRK05298 10 PYKPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMANVIARL------QRPTLVLAHNKTLAAQLYSEFKEFFPE 83 (652)
T ss_pred CCCCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHHHHHHHh------CCCEEEEECCHHHHHHHHHHHHHhcCC
Confidence 46789999999998887775443 45677779999998876655432 25899999994 677899999999987
Q ss_pred CeEEEE
Q 000139 600 FKILTY 605 (2062)
Q Consensus 600 lkVl~y 605 (2062)
..|..|
T Consensus 84 ~~v~~f 89 (652)
T PRK05298 84 NAVEYF 89 (652)
T ss_pred CeEEEe
Confidence 666555
No 253
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=84.03 E-value=2.6 Score=57.32 Aligned_cols=126 Identities=19% Similarity=0.200 Sum_probs=72.9
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEe-cCCcHHHHHHHHHHH-CCCCeEEEEeCChhhHHhhhhccCCCCC
Q 000139 547 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVV-PTSVMLNWETEFLKW-CPAFKILTYFGSAKERKFKRQGWLKPNS 624 (2062)
Q Consensus 547 ILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVv-PtSLL~QW~~Efkkw-~P~lkVl~y~Gs~kerk~~r~gw~k~~~ 624 (2062)
++=-.||.|||-..+-.+..... .....+|||. -.+++.+-..-|+.. ++++. .|...... .+....
T Consensus 53 vVRSpMGTGKTtaLi~wLk~~l~--~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv--~Y~d~~~~-------~i~~~~ 121 (824)
T PF02399_consen 53 VVRSPMGTGKTTALIRWLKDALK--NPDKSVLVVSHRRSLTKSLAERFKKAGLSGFV--NYLDSDDY-------IIDGRP 121 (824)
T ss_pred EEECCCCCCcHHHHHHHHHHhcc--CCCCeEEEEEhHHHHHHHHHHHHhhcCCCcce--eeeccccc-------cccccc
Confidence 66778999999877666655432 2335778875 457777777766653 23333 44333211 122234
Q ss_pred ceEEEEehhhhhhchhhhhccCeeEEEEcCccccCCh-h-------hHHHHHHHcc--cCceEEEEeccC
Q 000139 625 FHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNW-K-------SQRWQTLLNF--NSKRRILLTGTP 684 (2062)
Q Consensus 625 fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~-~-------Sk~~qaL~~L--~a~~RLLLTGTP 684 (2062)
++.+++..+.+.+....+- .+|++|||||+-.+-+. . ...+..+..+ ++++.+++-||-
T Consensus 122 ~~rLivqIdSL~R~~~~~l-~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~l 190 (824)
T PF02399_consen 122 YDRLIVQIDSLHRLDGSLL-DRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADL 190 (824)
T ss_pred cCeEEEEehhhhhcccccc-cccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCC
Confidence 6677777777765543311 24999999998543221 1 1222223333 688888888873
No 254
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=83.88 E-value=2 Score=52.05 Aligned_cols=128 Identities=20% Similarity=0.191 Sum_probs=77.2
Q ss_pred CCCChHHHHHH-HHHHHHHHhcCCCCcEEEEecCC-c---HHHHHHHHHHHCCCCeEEEEeCChhhHHhhhhccCCCCCc
Q 000139 551 EMGLGKTIMTI-AMLAHLACEKGIWGPHLIVVPTS-V---MLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNSF 625 (2062)
Q Consensus 551 EMGLGKTIQaI-ALLa~L~~~~g~~Gp~LIVvPtS-L---L~QW~~Efkkw~P~lkVl~y~Gs~kerk~~r~gw~k~~~f 625 (2062)
-.|.|||-.-+ -+|..+ ......=-.+|+||+. + ..|-..++.+++. +++.+-.|...-+..... -.+..
T Consensus 130 KNGTGKT~a~~IP~Leki-d~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~-i~vmvttGGT~lrDDI~R---l~~~V 204 (459)
T KOG0326|consen 130 KNGTGKTAAYCIPVLEKI-DPKKNVIQAIILVPTRELALQTSQVCKELSKHLG-IKVMVTTGGTSLRDDIMR---LNQTV 204 (459)
T ss_pred cCCCCCccceechhhhhc-CccccceeEEEEeecchhhHHHHHHHHHHhcccC-eEEEEecCCcccccceee---ecCce
Confidence 47999995322 122211 1112222468999984 2 3556778888875 777777776654432111 12578
Q ss_pred eEEEEehhhhhhchh--hhhccCeeEEEEcCccccCCh--hhHHHHHHHcc-cCceEEEEecc
Q 000139 626 HVCITTYRLIIQDSK--VFKRKKWKYLILDEAHLIKNW--KSQRWQTLLNF-NSKRRILLTGT 683 (2062)
Q Consensus 626 dVVITSYe~l~~d~~--~L~r~~W~lVILDEAH~IKN~--~Sk~~qaL~~L-~a~~RLLLTGT 683 (2062)
|++|.|...+..-.. .-.-..-..+|+|||..+-.. ....-+.+.-| +.+..+|.|||
T Consensus 205 H~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~rQillySAT 267 (459)
T KOG0326|consen 205 HLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKERQILLYSAT 267 (459)
T ss_pred EEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHHHhCCccceeeEEecc
Confidence 999999987765322 111124578999999998653 33344444444 56678888888
No 255
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.76 E-value=7.2 Score=52.32 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhhcCC--cE-EEEcCCCChHHHHHHHHHHHHHHhcC
Q 000139 528 YQHIGLDWLVTMYEKRL--NG-ILADEMGLGKTIMTIAMLAHLACEKG 572 (2062)
Q Consensus 528 YQ~~GL~WLv~l~~~~~--gG-ILADEMGLGKTIQaIALLa~L~~~~g 572 (2062)
.|...+..|.+.+..+. .. |+.-..|.|||..+.+|...+.|..+
T Consensus 17 Gq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~ 64 (584)
T PRK14952 17 GQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQG 64 (584)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccC
Confidence 36666666666655443 33 78999999999999999999888643
No 256
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=83.73 E-value=6.1 Score=48.59 Aligned_cols=133 Identities=20% Similarity=0.174 Sum_probs=67.7
Q ss_pred cHHHHHHHHHHHHHhhcC-----CcEEEEcCCCChHHHHHHHHHHHHHHhcCC---CCcEEEE-ecC-CcHHHHHHHHHH
Q 000139 526 REYQHIGLDWLVTMYEKR-----LNGILADEMGLGKTIMTIAMLAHLACEKGI---WGPHLIV-VPT-SVMLNWETEFLK 595 (2062)
Q Consensus 526 RpYQ~~GL~WLv~l~~~~-----~gGILADEMGLGKTIQaIALLa~L~~~~g~---~Gp~LIV-vPt-SLL~QW~~Efkk 595 (2062)
+|-=..+++.|..++... .|-+|.-+.|.|||..+=-|.......... .-|+|+| +|. .........|-.
T Consensus 39 Y~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~ 118 (302)
T PF05621_consen 39 YPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILE 118 (302)
T ss_pred CHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHH
Confidence 455566777777766533 255778889999997654444322111111 1255444 444 344444444322
Q ss_pred H--CCCCeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCCh-hhH---HHHHH
Q 000139 596 W--CPAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNW-KSQ---RWQTL 669 (2062)
Q Consensus 596 w--~P~lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~-~Sk---~~qaL 669 (2062)
. .| |..... ....-.+....|+..+..+|||||.|++-.. ..+ ...++
T Consensus 119 ~lgaP------~~~~~~--------------------~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~L 172 (302)
T PF05621_consen 119 ALGAP------YRPRDR--------------------VAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNAL 172 (302)
T ss_pred HhCcc------cCCCCC--------------------HHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHH
Confidence 1 12 111110 1111222345688899999999999997432 222 22333
Q ss_pred HcccCc--eEEEEeccC
Q 000139 670 LNFNSK--RRILLTGTP 684 (2062)
Q Consensus 670 ~~L~a~--~RLLLTGTP 684 (2062)
+.|... --+.+.||+
T Consensus 173 K~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 173 KFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHhhccCCCeEEeccH
Confidence 444332 235566775
No 257
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.38 E-value=7.8 Score=49.05 Aligned_cols=43 Identities=19% Similarity=0.234 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhhcCC--cE-EEEcCCCChHHHHHHHHHHHHHHh
Q 000139 528 YQHIGLDWLVTMYEKRL--NG-ILADEMGLGKTIMTIAMLAHLACE 570 (2062)
Q Consensus 528 YQ~~GL~WLv~l~~~~~--gG-ILADEMGLGKTIQaIALLa~L~~~ 570 (2062)
-|...+..|.+.+..+. ++ ||.-+.|.|||..+-+++..+.|.
T Consensus 20 Gq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~ 65 (363)
T PRK14961 20 GQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQ 65 (363)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCC
Confidence 35556666666555432 33 789999999999998888887764
No 258
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=83.32 E-value=4.3 Score=53.71 Aligned_cols=44 Identities=23% Similarity=0.243 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhhcCCc--E-EEEcCCCChHHHHHHHHHHHHHHhcC
Q 000139 529 QHIGLDWLVTMYEKRLN--G-ILADEMGLGKTIMTIAMLAHLACEKG 572 (2062)
Q Consensus 529 Q~~GL~WLv~l~~~~~g--G-ILADEMGLGKTIQaIALLa~L~~~~g 572 (2062)
|...+..|......+.- . |+.-+.|.|||-.+.+++..+.|..+
T Consensus 19 qe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~ 65 (535)
T PRK08451 19 QESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQG 65 (535)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCC
Confidence 44444555554444432 2 78999999999999999888877543
No 259
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.04 E-value=4.2 Score=53.24 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=21.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHh
Q 000139 546 GILADEMGLGKTIMTIAMLAHLACE 570 (2062)
Q Consensus 546 GILADEMGLGKTIQaIALLa~L~~~ 570 (2062)
-||.-..|.|||..|-++...+.+.
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~~l~~~ 63 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAKSLNCE 63 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHhccc
Confidence 4889999999999998888777664
No 260
>PRK06526 transposase; Provisional
Probab=83.04 E-value=2.2 Score=51.37 Aligned_cols=55 Identities=20% Similarity=0.294 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHH
Q 000139 530 HIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLK 595 (2062)
Q Consensus 530 ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkk 595 (2062)
+.+.+|+. .+.|.+|.-..|.|||..+.++...+. ..|. +++++ ....|..++..
T Consensus 89 l~~~~fi~----~~~nlll~Gp~GtGKThLa~al~~~a~-~~g~--~v~f~----t~~~l~~~l~~ 143 (254)
T PRK06526 89 LGTLDFVT----GKENVVFLGPPGTGKTHLAIGLGIRAC-QAGH--RVLFA----TAAQWVARLAA 143 (254)
T ss_pred HhcCchhh----cCceEEEEeCCCCchHHHHHHHHHHHH-HCCC--chhhh----hHHHHHHHHHH
Confidence 33445664 466788999999999999999876654 3333 33332 23456666643
No 261
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=82.58 E-value=0.86 Score=53.46 Aligned_cols=44 Identities=20% Similarity=0.288 Sum_probs=41.6
Q ss_pred EEeccccccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCc
Q 000139 1138 ILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQT 1181 (2062)
Q Consensus 1138 LLSTrAGG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQT 1181 (2062)
|++|...|.|+++...|.||.||.+-.+.....+.+|++|.|-+
T Consensus 302 ~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtk 345 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK 345 (387)
T ss_pred hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccc
Confidence 58899999999999999999999999999999999999999954
No 262
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=82.30 E-value=3.5 Score=52.27 Aligned_cols=61 Identities=15% Similarity=0.158 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhhcCC---cEEEEcCCCChHHHHHHHHHHHHHHhcCCC-------CcEEEEecCCcHHHH
Q 000139 529 QHIGLDWLVTMYEKRL---NGILADEMGLGKTIMTIAMLAHLACEKGIW-------GPHLIVVPTSVMLNW 589 (2062)
Q Consensus 529 Q~~GL~WLv~l~~~~~---gGILADEMGLGKTIQaIALLa~L~~~~g~~-------Gp~LIVvPtSLL~QW 589 (2062)
|......|.+.+..+. .-++.-..|+|||..+.+|...+.|..... .+.|.+|+.+-.-.|
T Consensus 24 q~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~ 94 (365)
T PRK07471 24 HAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARR 94 (365)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHH
Confidence 5566666666666543 347899999999999999999999865211 234555665544444
No 263
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=82.30 E-value=1.8 Score=53.88 Aligned_cols=140 Identities=18% Similarity=0.184 Sum_probs=86.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHH-HHHHCCC--CeEEEEeCChhhHHhhhhcc
Q 000139 543 RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETE-FLKWCPA--FKILTYFGSAKERKFKRQGW 619 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~E-fkkw~P~--lkVl~y~Gs~kerk~~r~gw 619 (2062)
+.+.+.--..|.|||..-...+++...-.-...-.||++|+..+.+-..+ +..|... .++....|....+... .-
T Consensus 63 G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~--~~ 140 (397)
T KOG0327|consen 63 GHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRRED--QA 140 (397)
T ss_pred CCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhh--hh
Confidence 46778777899999988443333321101111235899999877664444 3344433 4555444433322111 11
Q ss_pred CCCCCceEEEEehhhhhhc--hhhhhccCeeEEEEcCcccc--CChhhHHHHHHHcccCc-eEEEEeccC
Q 000139 620 LKPNSFHVCITTYRLIIQD--SKVFKRKKWKYLILDEAHLI--KNWKSQRWQTLLNFNSK-RRILLTGTP 684 (2062)
Q Consensus 620 ~k~~~fdVVITSYe~l~~d--~~~L~r~~W~lVILDEAH~I--KN~~Sk~~qaL~~L~a~-~RLLLTGTP 684 (2062)
......+|++.|...+..- ...|......+.|+|||-.. .++.-+.+.....++.. ..+++|||-
T Consensus 141 i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~ 210 (397)
T KOG0327|consen 141 LLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATM 210 (397)
T ss_pred hhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHHHHHHHcCcchhheeecccC
Confidence 2345678999998665432 23566777899999999876 45677777777777544 778899983
No 264
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.24 E-value=8.7 Score=51.16 Aligned_cols=44 Identities=27% Similarity=0.419 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhhcCC---cEEEEcCCCChHHHHHHHHHHHHHHhcC
Q 000139 529 QHIGLDWLVTMYEKRL---NGILADEMGLGKTIMTIAMLAHLACEKG 572 (2062)
Q Consensus 529 Q~~GL~WLv~l~~~~~---gGILADEMGLGKTIQaIALLa~L~~~~g 572 (2062)
|...+..|...+..+. .-|+.-+.|.|||..+..+...+.|..+
T Consensus 21 q~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~ 67 (546)
T PRK14957 21 QQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTG 67 (546)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 4444445555554433 2478999999999999999888877543
No 265
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=82.21 E-value=17 Score=40.72 Aligned_cols=45 Identities=18% Similarity=0.261 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhhcCC--c-EEEEcCCCChHHHHHHHHHHHHHHhcCC
Q 000139 529 QHIGLDWLVTMYEKRL--N-GILADEMGLGKTIMTIAMLAHLACEKGI 573 (2062)
Q Consensus 529 Q~~GL~WLv~l~~~~~--g-GILADEMGLGKTIQaIALLa~L~~~~g~ 573 (2062)
|...+..|...+.++. . -|+.-..|.||+-.+.+++..+.+....
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~ 49 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPN 49 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-C
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCC
Confidence 5666777777776553 3 3788889999999999999999886544
No 266
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=82.17 E-value=6.7 Score=51.76 Aligned_cols=43 Identities=19% Similarity=0.198 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhcCC---cEEEEcCCCChHHHHHHHHHHHHHHhc
Q 000139 529 QHIGLDWLVTMYEKRL---NGILADEMGLGKTIMTIAMLAHLACEK 571 (2062)
Q Consensus 529 Q~~GL~WLv~l~~~~~---gGILADEMGLGKTIQaIALLa~L~~~~ 571 (2062)
|...+..|...+..+. ..||.-..|.|||..+-.+...+.|..
T Consensus 26 q~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~ 71 (507)
T PRK06645 26 QEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSA 71 (507)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 4555555555444433 568999999999999999988887754
No 267
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=82.10 E-value=5.1 Score=50.11 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=36.6
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhc
Q 000139 524 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEK 571 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~ 571 (2062)
.++|+|.....-++..-+-...-++.-..|+|||..+.+|...+.|..
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~ 50 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEA 50 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 357888888887776422222346789999999999999999999864
No 268
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=81.83 E-value=10 Score=47.37 Aligned_cols=49 Identities=18% Similarity=0.289 Sum_probs=40.9
Q ss_pred CCCcHHHHHHHHHHHHHhhcCC---cEEEEcCCCChHHHHHHHHHHHHHHhc
Q 000139 523 FPLREYQHIGLDWLVTMYEKRL---NGILADEMGLGKTIMTIAMLAHLACEK 571 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~~---gGILADEMGLGKTIQaIALLa~L~~~~ 571 (2062)
..++|+|......|...+..+. .-++.-..|+||+..+.+|...+.|..
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~ 54 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASG 54 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCC
Confidence 4589999999998888876554 346789999999999999999999854
No 269
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=81.71 E-value=1.2 Score=50.20 Aligned_cols=37 Identities=24% Similarity=0.367 Sum_probs=26.0
Q ss_pred CceEEEEehhhhhhchh--hh--hccCeeEEEEcCccccCC
Q 000139 624 SFHVCITTYRLIIQDSK--VF--KRKKWKYLILDEAHLIKN 660 (2062)
Q Consensus 624 ~fdVVITSYe~l~~d~~--~L--~r~~W~lVILDEAH~IKN 660 (2062)
..+|||++|..+..... .+ ...+-.+|||||||+|-+
T Consensus 119 ~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 119 NADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp G-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred cCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 46899999999987632 22 123457899999999854
No 270
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=81.67 E-value=6.6 Score=43.26 Aligned_cols=47 Identities=17% Similarity=0.277 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEEeccccccccCccc--CCEEEEecCCC
Q 000139 1116 TQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVG--ADTVIFYDSDW 1163 (2062)
Q Consensus 1116 Ts~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~--ADtVIfyD~dW 1163 (2062)
....+...+++.|...... .+|+++.+..+|||+.+ +..||+.-.|+
T Consensus 31 ~~~~~~~~~l~~f~~~~~~-~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 31 EDGKETGKLLEKYVEACEN-AILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred CChhHHHHHHHHHHHcCCC-EEEEEccceecceecCCCCeeEEEEEecCC
Confidence 3344578999999874332 34677777999999987 67888887654
No 271
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=80.95 E-value=10 Score=47.37 Aligned_cols=47 Identities=17% Similarity=0.347 Sum_probs=38.3
Q ss_pred CcHHHHHHHHHHHHHhhcCC---cEEEEcCCCChHHHHHHHHHHHHHHhc
Q 000139 525 LREYQHIGLDWLVTMYEKRL---NGILADEMGLGKTIMTIAMLAHLACEK 571 (2062)
Q Consensus 525 LRpYQ~~GL~WLv~l~~~~~---gGILADEMGLGKTIQaIALLa~L~~~~ 571 (2062)
++|+|...-.-|.+.+..++ .-++.-..|+||+..+.+|...+.|..
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~ 52 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQT 52 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCC
Confidence 57888888888888777654 335788999999999999999999964
No 272
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.95 E-value=11 Score=49.51 Aligned_cols=44 Identities=23% Similarity=0.332 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhhcCC---cEEEEcCCCChHHHHHHHHHHHHHHhcC
Q 000139 529 QHIGLDWLVTMYEKRL---NGILADEMGLGKTIMTIAMLAHLACEKG 572 (2062)
Q Consensus 529 Q~~GL~WLv~l~~~~~---gGILADEMGLGKTIQaIALLa~L~~~~g 572 (2062)
|...+..|.+.+..+. .-||.-..|.|||-.|..+...+.|..+
T Consensus 18 Qe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~ 64 (491)
T PRK14964 18 QDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNG 64 (491)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCC
Confidence 4444555555544432 4578999999999999888878877644
No 273
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=80.86 E-value=8.5 Score=49.35 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=22.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhc
Q 000139 546 GILADEMGLGKTIMTIAMLAHLACEK 571 (2062)
Q Consensus 546 GILADEMGLGKTIQaIALLa~L~~~~ 571 (2062)
-|+.-..|.|||..+.+|...+.|..
T Consensus 39 ~Lf~Gp~G~GKt~lA~~lA~~l~c~~ 64 (394)
T PRK07940 39 WLFTGPPGSGRSVAARAFAAALQCTD 64 (394)
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCC
Confidence 46899999999999999998888754
No 274
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.72 E-value=7.2 Score=52.58 Aligned_cols=42 Identities=19% Similarity=0.355 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhhcCC--cE-EEEcCCCChHHHHHHHHHHHHHHh
Q 000139 529 QHIGLDWLVTMYEKRL--NG-ILADEMGLGKTIMTIAMLAHLACE 570 (2062)
Q Consensus 529 Q~~GL~WLv~l~~~~~--gG-ILADEMGLGKTIQaIALLa~L~~~ 570 (2062)
|...+..|.+.+..+. .. |+.-..|.|||..+..|...+.|.
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~ 65 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQ 65 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 5556666666665543 23 789999999999999998888874
No 275
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=80.64 E-value=4.2 Score=49.73 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=20.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHH
Q 000139 544 LNGILADEMGLGKTIMTIAMLAHLAC 569 (2062)
Q Consensus 544 ~gGILADEMGLGKTIQaIALLa~L~~ 569 (2062)
.+.+|.-+.|.|||..|.++...+..
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~ 84 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHR 84 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 35678899999999988776665543
No 276
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=80.14 E-value=8 Score=42.64 Aligned_cols=53 Identities=15% Similarity=0.307 Sum_probs=33.9
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCC-ceEEEEeccc--cccccCccc--CCEEEEecCCC
Q 000139 1110 MRLDGSTQPEERQTLMQRFNTNPK-IFLFILSTRS--GGVGINLVG--ADTVIFYDSDW 1163 (2062)
Q Consensus 1110 ~RLDGsTs~eqRq~lmerFN~D~~-IfVfLLSTrA--GG~GLNLT~--ADtVIfyD~dW 1163 (2062)
+.+.+... .+...+++.|+.... .-.+|+++.. .++||||.+ +..||+.-.|+
T Consensus 23 i~~e~~~~-~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 23 VFIEGKDS-GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred EEEECCCC-chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 33444332 355789999986322 0134555544 799999987 67888877664
No 277
>PRK14974 cell division protein FtsY; Provisional
Probab=80.12 E-value=13 Score=46.86 Aligned_cols=114 Identities=12% Similarity=0.100 Sum_probs=56.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC----CcHHHHHHHHHHHCCCCeEEE-EeCChhhHHhhhhccC
Q 000139 546 GILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT----SVMLNWETEFLKWCPAFKILT-YFGSAKERKFKRQGWL 620 (2062)
Q Consensus 546 GILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt----SLL~QW~~Efkkw~P~lkVl~-y~Gs~kerk~~r~gw~ 620 (2062)
.++.-..|.|||.++..+...+ ...+ .++++|... ..+.||..-.... ++.++. ++|....
T Consensus 143 i~~~G~~GvGKTTtiakLA~~l-~~~g--~~V~li~~Dt~R~~a~eqL~~~a~~l--gv~v~~~~~g~dp~--------- 208 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLAYYL-KKNG--FSVVIAAGDTFRAGAIEQLEEHAERL--GVKVIKHKYGADPA--------- 208 (336)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH-HHcC--CeEEEecCCcCcHHHHHHHHHHHHHc--CCceecccCCCCHH---------
Confidence 4567799999997776665554 3333 255555543 2345664433332 222221 1111100
Q ss_pred CCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHc----ccCc-eEEEEeccCCC
Q 000139 621 KPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLN----FNSK-RRILLTGTPLQ 686 (2062)
Q Consensus 621 k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~----L~a~-~RLLLTGTPLQ 686 (2062)
..+............++||+|.|+++.+.... ...|.. ++.. ..|.|++|.-+
T Consensus 209 ------------~v~~~ai~~~~~~~~DvVLIDTaGr~~~~~~l-m~eL~~i~~~~~pd~~iLVl~a~~g~ 266 (336)
T PRK14974 209 ------------AVAYDAIEHAKARGIDVVLIDTAGRMHTDANL-MDELKKIVRVTKPDLVIFVGDALAGN 266 (336)
T ss_pred ------------HHHHHHHHHHHhCCCCEEEEECCCccCCcHHH-HHHHHHHHHhhCCceEEEeeccccch
Confidence 01111112223345789999999998654322 222222 2333 35666776544
No 278
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=79.68 E-value=15 Score=50.98 Aligned_cols=51 Identities=18% Similarity=0.179 Sum_probs=34.8
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHH-hh-cCC-cEE-EEcCCCChHHHHHHHHHHHHHH
Q 000139 517 FPFLLKFPLREYQHIGLDWLVTM-YE-KRL-NGI-LADEMGLGKTIMTIAMLAHLAC 569 (2062)
Q Consensus 517 vP~lLk~~LRpYQ~~GL~WLv~l-~~-~~~-gGI-LADEMGLGKTIQaIALLa~L~~ 569 (2062)
+|..|. =|+-|+.-|.-.+.- .. .+. ++| |.-.+|.|||.++-.++..|..
T Consensus 753 VPD~LP--hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 753 VPKYLP--CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred CCCcCC--ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 454444 388888888755443 33 222 333 7999999999999988877643
No 279
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=79.58 E-value=2.1 Score=52.41 Aligned_cols=45 Identities=51% Similarity=0.661 Sum_probs=34.4
Q ss_pred CCCCccchHHHHHHhhhcCCChHHHHHHhhccCCCCHHHHHHHhhcc
Q 000139 368 DKDDETTLSEEEELAKADSNNYIDEIALLQKESEIPVEELLARYRKD 414 (2062)
Q Consensus 368 ~~DdE~Ti~eEE~~e~~~~~d~~~E~~~L~~e~~m~ieeLla~~~~~ 414 (2062)
+.|++.|.. ||++. ........||+.|.++++||+++||+.|-..
T Consensus 32 dfdde~tle-Eeel~-d~e~~~e~ei~~l~re~dmp~~ella~yg~~ 76 (445)
T KOG4329|consen 32 DFDDEATLE-EEELA-DMEAKAEDEIETLRRESDMPIRELLALYGYT 76 (445)
T ss_pred chhhhcccc-Hhhcc-CccchhhHHHHHHHHhcCCcHHHHHHHhccc
Confidence 458888887 44443 2233466789999999999999999999875
No 280
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.47 E-value=11 Score=50.70 Aligned_cols=44 Identities=16% Similarity=0.173 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhhcCCcE---EEEcCCCChHHHHHHHHHHHHHHhc
Q 000139 528 YQHIGLDWLVTMYEKRLNG---ILADEMGLGKTIMTIAMLAHLACEK 571 (2062)
Q Consensus 528 YQ~~GL~WLv~l~~~~~gG---ILADEMGLGKTIQaIALLa~L~~~~ 571 (2062)
.|...+.+|...+..+.-+ ||.-..|+|||..+.+++..+.|..
T Consensus 20 Gq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~ 66 (585)
T PRK14950 20 GQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTT 66 (585)
T ss_pred CCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 3566666666665554322 7899999999999999988887643
No 281
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=79.20 E-value=0.58 Score=60.62 Aligned_cols=48 Identities=27% Similarity=0.587 Sum_probs=43.7
Q ss_pred CCCCChhhhHHHHHHHHhcCCCchhHHHHhhccccCccccccccCChhhHHHHHHHHHHH
Q 000139 1660 PDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRY 1719 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~ 1719 (2062)
.+-|+.+|++.|..+|.+.|+-|..|+-.+ .|-|..|+.||+.++...
T Consensus 291 ~~~wt~e~~~eL~~~~~~~~~~w~~ig~~~------------~rmp~~crd~wr~~~~~g 338 (512)
T COG5147 291 RGKWTKEEEQELAKLVVEHGGSWTEIGKLL------------GRMPNDCRDRWRDYVKCG 338 (512)
T ss_pred hccCccccccccccccccccchhhHhhhhh------------ccCcHHHHHHHhhhcccc
Confidence 789999999999999999999999999876 367789999999998765
No 282
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=79.11 E-value=11 Score=48.79 Aligned_cols=56 Identities=16% Similarity=0.177 Sum_probs=35.7
Q ss_pred CeeEEEEcCccccCChhhH--HHHHHHc---ccCceEEEEeccCCCCChHHHHHHHHHhCC
Q 000139 646 KWKYLILDEAHLIKNWKSQ--RWQTLLN---FNSKRRILLTGTPLQNDLMELWSLMHFLMP 701 (2062)
Q Consensus 646 ~W~lVILDEAH~IKN~~Sk--~~qaL~~---L~a~~RLLLTGTPLQNsL~ELwSLL~FL~P 701 (2062)
.+++||||-+-+....... ....+.. ......++|++|+=++.+.+++..++.+.+
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~ 359 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPL 359 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCC
Confidence 5799999998765432221 1122222 123567999999888888888877776644
No 283
>PRK08084 DNA replication initiation factor; Provisional
Probab=79.01 E-value=8.5 Score=45.72 Aligned_cols=37 Identities=22% Similarity=0.079 Sum_probs=24.1
Q ss_pred HHHHHHHHhh--cCCcEEEEcCCCChHHHHHHHHHHHHH
Q 000139 532 GLDWLVTMYE--KRLNGILADEMGLGKTIMTIAMLAHLA 568 (2062)
Q Consensus 532 GL~WLv~l~~--~~~gGILADEMGLGKTIQaIALLa~L~ 568 (2062)
.+.++..... ...+-+|.-..|.|||..+.++...+.
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4444444322 223568899999999988877666554
No 284
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=78.60 E-value=2.2 Score=56.07 Aligned_cols=105 Identities=20% Similarity=0.282 Sum_probs=64.2
Q ss_pred CCCCCChhhhHHHHHHHH-------hc------------------CC-CchhHHHHhhccccCccccccccCChhhHHHH
Q 000139 1659 SPDVWLPQEDAILCAVVH-------EY------------------GP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERF 1712 (2062)
Q Consensus 1659 ~~~~w~~~ed~~l~~~v~-------~~------------------g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~ 1712 (2062)
..++||-+|.+.|..+|. .| -+ ||.+||++| ..|++.|||+-|
T Consensus 435 ~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~-----------~TR~~~qCr~Kw 503 (607)
T KOG0051|consen 435 NRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEML-----------GTRSRIQCRYKW 503 (607)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhh-----------cCCCcchHHHHH
Confidence 379999999999999993 55 12 799999977 569999999999
Q ss_pred HHHHHHHHHhCCCCCc-ccccc--cccccceeEeechHHHHHHHHHHHhccch--HHHHHHHHHHHHHhH
Q 000139 1713 RELIQRYILSVPDNSI-NEKTS--NVGSGKALLKVTEDNVRTLLNVAAEQEDN--ELLLQKHFTALLSSV 1777 (2062)
Q Consensus 1713 ~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 1777 (2062)
-.|+-+.......-.. +...- -.. ..+.+++++---+=++|..-|.- ..-|+.||.-+-..|
T Consensus 504 ~kl~~~~s~n~~~~~~~~~~v~l~ErL---~dl~~~e~~~IDW~~l~~~~~g~~~~~e~r~q~~~lk~~I 570 (607)
T KOG0051|consen 504 YKLTTSPSFNKRQESKGSDMVWLLERL---SDLDLTEESPIDWKSLAEYAPGESTGEELRLQFERLKKKI 570 (607)
T ss_pred HHHHhhHHhhcccccccchhHHHHHHH---HhcccccCCccCHHHHHHhCCCCCcHHHHHHHHHhHhhcc
Confidence 9999876543332221 00000 000 01222333333333444445544 556667777665544
No 285
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.07 E-value=14 Score=50.23 Aligned_cols=43 Identities=19% Similarity=0.087 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhhcCC---cEEEEcCCCChHHHHHHHHHHHHHHh
Q 000139 528 YQHIGLDWLVTMYEKRL---NGILADEMGLGKTIMTIAMLAHLACE 570 (2062)
Q Consensus 528 YQ~~GL~WLv~l~~~~~---gGILADEMGLGKTIQaIALLa~L~~~ 570 (2062)
.|...+..|...+..+. .-||.-+.|+|||..+.+|...+.|.
T Consensus 20 Gq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 20 GQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 34555555665555543 33789999999999999999998875
No 286
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=77.93 E-value=15 Score=51.63 Aligned_cols=48 Identities=21% Similarity=0.147 Sum_probs=34.4
Q ss_pred CceEEEEeccccccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCc
Q 000139 1133 KIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTRE 1183 (2062)
Q Consensus 1133 ~IfVfLLSTrAGG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRd 1183 (2062)
+..+++++|...-+|+++- +|.+|. |+. --....|+.|||+|-|+...
T Consensus 837 ~~~~i~v~Tqv~E~g~D~d-fd~~~~-~~~-~~~sliQ~aGR~~R~~~~~~ 884 (1110)
T TIGR02562 837 NHLFIVLATPVEEVGRDHD-YDWAIA-DPS-SMRSIIQLAGRVNRHRLEKV 884 (1110)
T ss_pred CCCeEEEEeeeEEEEeccc-CCeeee-ccC-cHHHHHHHhhcccccccCCC
Confidence 4556689999999999975 455443 331 12357899999999998554
No 287
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=77.81 E-value=2.3 Score=54.21 Aligned_cols=86 Identities=21% Similarity=0.360 Sum_probs=62.5
Q ss_pred CCCCChhhhHHHHHHHHhcCCCchhHHHHhhccccCccccccccCChhhHHHHHHHHHHHHHhCCC--C-----------
Q 000139 1660 PDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVPD--N----------- 1726 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~~--~----------- 1726 (2062)
...|+.+||..|.-+...+-+.|..|+|+| .|.+.+|-+||-.|+..++.-.-. .
T Consensus 59 ~tews~eederlLhlakl~p~qwrtIa~i~------------gr~~~qc~eRy~~ll~~~~s~~~~~~~~~D~rLk~gE~ 126 (617)
T KOG0050|consen 59 KTEWSREEDERLLHLAKLEPTQWRTIADIM------------GRTSQQCLERYNNLLDVYVSYHYHSEPYIDAKLKEGEI 126 (617)
T ss_pred hhhhhhhHHHHHHHHHHhcCCccchHHHHh------------hhhHHHHHHHHHHHHHHHHhhhcccccccccccCCCcC
Confidence 688999999999999999999999999988 389999999999999988764433 1
Q ss_pred -Cccccccccccccee-EeechHHHHHHHHHHHhccc
Q 000139 1727 -SINEKTSNVGSGKAL-LKVTEDNVRTLLNVAAEQED 1761 (2062)
Q Consensus 1727 -~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 1761 (2062)
|+.|+.. ++-. ++..||.--||-..-+.+-|
T Consensus 127 ePn~e~~~----aRpd~~dmdEde~eMl~eaRarlaN 159 (617)
T KOG0050|consen 127 EPNQETNP----ARPDGFDMDEDEGEMLSEARARLAN 159 (617)
T ss_pred CCcccccc----ccCCcccchHHHHHHHHHHHHHHhc
Confidence 1222221 1111 45667777777666555544
No 288
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.69 E-value=24 Score=47.12 Aligned_cols=44 Identities=25% Similarity=0.391 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhhcCC--c-EEEEcCCCChHHHHHHHHHHHHHHhcC
Q 000139 529 QHIGLDWLVTMYEKRL--N-GILADEMGLGKTIMTIAMLAHLACEKG 572 (2062)
Q Consensus 529 Q~~GL~WLv~l~~~~~--g-GILADEMGLGKTIQaIALLa~L~~~~g 572 (2062)
|...+..|.+.+..+. . -|+.-..|.|||..+-.|...+.|..+
T Consensus 21 q~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~ 67 (527)
T PRK14969 21 QEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETG 67 (527)
T ss_pred cHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCC
Confidence 4445555555444332 3 378999999999999998888877543
No 289
>CHL00181 cbbX CbbX; Provisional
Probab=77.47 E-value=8 Score=47.50 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=19.4
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHH
Q 000139 545 NGILADEMGLGKTIMTIAMLAHLA 568 (2062)
Q Consensus 545 gGILADEMGLGKTIQaIALLa~L~ 568 (2062)
+.+|.-..|.|||..|-++...+.
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~ 84 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILY 84 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 457889999999999988766554
No 290
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.41 E-value=10 Score=50.08 Aligned_cols=43 Identities=19% Similarity=0.279 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhhcCCcE---EEEcCCCChHHHHHHHHHHHHHHhc
Q 000139 529 QHIGLDWLVTMYEKRLNG---ILADEMGLGKTIMTIAMLAHLACEK 571 (2062)
Q Consensus 529 Q~~GL~WLv~l~~~~~gG---ILADEMGLGKTIQaIALLa~L~~~~ 571 (2062)
|...+..|......+.-+ ++.-..|.|||..+.++...+.|..
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~ 64 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSG 64 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 445555565555444322 8899999999999999998888753
No 291
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=77.36 E-value=11 Score=47.43 Aligned_cols=48 Identities=17% Similarity=0.279 Sum_probs=39.8
Q ss_pred CCcHHHHHHHHHHHHHhhcCC---cEEEEcCCCChHHHHHHHHHHHHHHhc
Q 000139 524 PLREYQHIGLDWLVTMYEKRL---NGILADEMGLGKTIMTIAMLAHLACEK 571 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~---gGILADEMGLGKTIQaIALLa~L~~~~ 571 (2062)
.++|+|......|.+.+..++ .-+++-..|+||+..+.+|..++.|..
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~ 52 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQ 52 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 367888888888888877654 336899999999999999999999964
No 292
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=77.11 E-value=3.2 Score=49.20 Aligned_cols=73 Identities=18% Similarity=0.189 Sum_probs=56.0
Q ss_pred CCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHC
Q 000139 522 KFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWC 597 (2062)
Q Consensus 522 k~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw~ 597 (2062)
+..+|+-|.+.+..|++- ..+.|.++---||-|||-+.+=+++....... .=+-+|||..++.+=..-+..-+
T Consensus 21 ~iliR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~--~LvrviVpk~Ll~q~~~~L~~~l 93 (229)
T PF12340_consen 21 NILIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSVIVPMLALALADGS--RLVRVIVPKALLEQMRQMLRSRL 93 (229)
T ss_pred CceeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccchHHHHHHHHHcCCC--cEEEEEcCHHHHHHHHHHHHHHH
Confidence 467999999999998863 45678899999999999888777766654322 24567899999999877776544
No 293
>PRK06835 DNA replication protein DnaC; Validated
Probab=77.07 E-value=17 Score=45.51 Aligned_cols=46 Identities=17% Similarity=0.133 Sum_probs=32.3
Q ss_pred CCcHHHHHHHHHHHH----HhhcCCcEEEEcCCCChHHHHHHHHHHHHHH
Q 000139 524 PLREYQHIGLDWLVT----MYEKRLNGILADEMGLGKTIMTIAMLAHLAC 569 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~----l~~~~~gGILADEMGLGKTIQaIALLa~L~~ 569 (2062)
..|.++..++.++.. .-..+.|-+|.-.+|+|||..+.|+...+..
T Consensus 160 ~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~ 209 (329)
T PRK06835 160 SPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLD 209 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHH
Confidence 457777666664432 2224566678889999999999988777754
No 294
>smart00573 HSA domain in helicases and associated with SANT domains.
Probab=76.53 E-value=14 Score=36.31 Aligned_cols=46 Identities=22% Similarity=0.255 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHH
Q 000139 81 KLKEEEQRLRKVAVNISKDVKKFWMKIEKLVLYKHQMEVDVRKKKAL 127 (2062)
Q Consensus 81 ~~~~~~~~~r~ia~~iak~v~~FW~~iek~v~~K~Q~~leekrKkAL 127 (2062)
...++....+..|..||++|.+||.++++.- -|...+.++.|.++|
T Consensus 26 df~e~~k~k~~~a~kla~~v~~~h~~~e~~e-~r~~er~ek~Rl~~l 71 (73)
T smart00573 26 DFKEEHKWKIAAAKKMAKAVMDYHQNKEKEE-ERREEKNEKRRLRKL 71 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 3445556677888999999999999998654 566678888888887
No 295
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=76.26 E-value=4.9 Score=47.31 Aligned_cols=86 Identities=20% Similarity=0.237 Sum_probs=53.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCeEEEEeCChhhHHhhhhccCCCC
Q 000139 544 LNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPN 623 (2062)
Q Consensus 544 ~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw~P~lkVl~y~Gs~kerk~~r~gw~k~~ 623 (2062)
.+-|++-..|.|||..+.++...|+... ...-+ ....-....
T Consensus 49 P~liisGpPG~GKTTsi~~LAr~LLG~~-----------------~ke~v---------------------LELNASdeR 90 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLARELLGDS-----------------YKEAV---------------------LELNASDER 90 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHHHHhChh-----------------hhhHh---------------------hhccCcccc
Confidence 3678999999999988777766654210 00000 000011123
Q ss_pred CceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHH
Q 000139 624 SFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLL 670 (2062)
Q Consensus 624 ~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~ 670 (2062)
+.|||=+...+|.+..-.+...+.+.||+|||.-+. +..-++++
T Consensus 91 GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT---~gAQQAlR 134 (333)
T KOG0991|consen 91 GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMT---AGAQQALR 134 (333)
T ss_pred ccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhh---hHHHHHHH
Confidence 456666666777777667777889999999998764 33344444
No 296
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=75.93 E-value=3.5 Score=52.57 Aligned_cols=107 Identities=25% Similarity=0.406 Sum_probs=65.0
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEEEec
Q 000139 1081 DGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYD 1160 (2062)
Q Consensus 1081 ~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIfyD 1160 (2062)
.|+||+|-|+... ..|...|+.|+ ||-+.. +|+ -+ +++|+|=-+
T Consensus 312 ~~RkvVvstniae------tsltidgiv~V-IDpGf~---kqk---VY--NPRIRvesl--------------------- 355 (699)
T KOG0925|consen 312 YGRKVVVSTNIAE------TSLTIDGIVFV-IDPGFS---KQK---VY--NPRIRVESL--------------------- 355 (699)
T ss_pred ccceEEEEecchh------eeeeeccEEEE-ecCchh---hhc---cc--Ccceeeeee---------------------
Confidence 4789988876433 23455666654 454443 121 12 467776110
Q ss_pred CCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHH---HHHHHHHHHHHHhcCCCCccccccCChhhh
Q 000139 1161 SDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKK---ANQKRALDDLVIQSGGYNTEFFKKLDPMEL 1232 (2062)
Q Consensus 1161 ~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkk---a~qKr~L~~~vIq~g~ft~~~fk~~di~eL 1232 (2062)
--.|..-+||+-|++|-|.|++-..+||.++...+--+... -.....|..+|+ ++|++.|.+|
T Consensus 356 -lv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~em~~~typeilrsNL~s~VL--------~LKklgI~dl 421 (699)
T KOG0925|consen 356 -LVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKEMQPQTYPEILRSNLSSTVL--------QLKKLGIDDL 421 (699)
T ss_pred -eeccchHhHHHHHhhhccCCCCCceEEeecHHhhhhcCCCCCcHHHHHHhhHHHHH--------HHHhcCcccc
Confidence 01467788999999999999999999999986654322100 012345666676 3556655554
No 297
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=75.86 E-value=26 Score=42.87 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=25.1
Q ss_pred HHHHHHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHH
Q 000139 531 IGLDWLVTMYEKR--LNGILADEMGLGKTIMTIAMLAHLA 568 (2062)
Q Consensus 531 ~GL~WLv~l~~~~--~gGILADEMGLGKTIQaIALLa~L~ 568 (2062)
..+..+......+ .+.+|.-+.|.|||..+-++...+.
T Consensus 24 ~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 24 EIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 3444444433332 2468999999999988877776654
No 298
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=75.46 E-value=15 Score=49.37 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=22.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhc
Q 000139 546 GILADEMGLGKTIMTIAMLAHLACEK 571 (2062)
Q Consensus 546 GILADEMGLGKTIQaIALLa~L~~~~ 571 (2062)
-|+.-+.|.|||..+.++...+.|..
T Consensus 41 yLf~Gp~G~GKTt~Ar~lAk~L~c~~ 66 (563)
T PRK06647 41 YIFSGPRGVGKTSSARAFARCLNCVN 66 (563)
T ss_pred EEEECCCCCCHHHHHHHHHHhhcccc
Confidence 47899999999999999988887753
No 299
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=75.36 E-value=17 Score=44.74 Aligned_cols=40 Identities=13% Similarity=0.110 Sum_probs=24.9
Q ss_pred CeeEEEEcCccccCChh--hHHHHHHHcccCceEEEEeccCC
Q 000139 646 KWKYLILDEAHLIKNWK--SQRWQTLLNFNSKRRILLTGTPL 685 (2062)
Q Consensus 646 ~W~lVILDEAH~IKN~~--Sk~~qaL~~L~a~~RLLLTGTPL 685 (2062)
..++|||||+|++.... ......+.......++++|++..
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 35789999999984322 12222344445666788888654
No 300
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=75.35 E-value=17 Score=45.58 Aligned_cols=132 Identities=14% Similarity=0.099 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHhhcCC--cE-EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCeEE
Q 000139 527 EYQHIGLDWLVTMYEKRL--NG-ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKIL 603 (2062)
Q Consensus 527 pYQ~~GL~WLv~l~~~~~--gG-ILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw~P~lkVl 603 (2062)
-.|...+.-|...+..+. .. ++.-+.|.|||..+.++...+.|..+..+. |-........-.....|++.++
T Consensus 9 ~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-----~cg~C~~c~~~~~~~hpD~~~i 83 (329)
T PRK08058 9 ALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-----PCGTCTNCKRIDSGNHPDVHLV 83 (329)
T ss_pred hhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-----CCCcCHHHHHHhcCCCCCEEEe
Confidence 356666666766665443 34 789999999999999999988875422222 2222222222223344555555
Q ss_pred EEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhhhh----ccCeeEEEEcCccccCChhh-HHHHHHHcccCceEE
Q 000139 604 TYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFK----RKKWKYLILDEAHLIKNWKS-QRWQTLLNFNSKRRI 678 (2062)
Q Consensus 604 ~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~----r~~W~lVILDEAH~IKN~~S-k~~qaL~~L~a~~RL 678 (2062)
...|.. .+.+.++.....+. ...++++||||||++..... .+-+.+..-...-.+
T Consensus 84 ~~~~~~--------------------i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~ 143 (329)
T PRK08058 84 APDGQS--------------------IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTA 143 (329)
T ss_pred cccccc--------------------CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceE
Confidence 443321 01122222111111 23689999999999953221 122222222344556
Q ss_pred EEecc
Q 000139 679 LLTGT 683 (2062)
Q Consensus 679 LLTGT 683 (2062)
+|+.+
T Consensus 144 Il~t~ 148 (329)
T PRK08058 144 ILLTE 148 (329)
T ss_pred EEEeC
Confidence 66555
No 301
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=75.34 E-value=18 Score=48.86 Aligned_cols=43 Identities=23% Similarity=0.212 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhhcCC---cEEEEcCCCChHHHHHHHHHHHHHHhc
Q 000139 529 QHIGLDWLVTMYEKRL---NGILADEMGLGKTIMTIAMLAHLACEK 571 (2062)
Q Consensus 529 Q~~GL~WLv~l~~~~~---gGILADEMGLGKTIQaIALLa~L~~~~ 571 (2062)
|-..+..|.+.+..+. .-||.-..|+|||..+..+...+.|..
T Consensus 29 q~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~ 74 (598)
T PRK09111 29 QEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEG 74 (598)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCC
Confidence 5555555555555443 457889999999999999999888853
No 302
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=75.24 E-value=34 Score=43.49 Aligned_cols=45 Identities=24% Similarity=0.249 Sum_probs=31.6
Q ss_pred cHHHHHHHHHHH-HHhh--cCCcEEEEcCCCChHHHHHHHHHHHHHHh
Q 000139 526 REYQHIGLDWLV-TMYE--KRLNGILADEMGLGKTIMTIAMLAHLACE 570 (2062)
Q Consensus 526 RpYQ~~GL~WLv-~l~~--~~~gGILADEMGLGKTIQaIALLa~L~~~ 570 (2062)
|+-|..-+.-.+ .... ...+.+|.-..|.|||..+-.++..+...
T Consensus 35 Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~ 82 (394)
T PRK00411 35 REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEI 82 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 777766665444 3222 23567899999999999998888777543
No 303
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.04 E-value=35 Score=43.86 Aligned_cols=42 Identities=17% Similarity=0.147 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhhcCC---cEEEEcCCCChHHHHHHHHHHHHHHh
Q 000139 529 QHIGLDWLVTMYEKRL---NGILADEMGLGKTIMTIAMLAHLACE 570 (2062)
Q Consensus 529 Q~~GL~WLv~l~~~~~---gGILADEMGLGKTIQaIALLa~L~~~ 570 (2062)
|...+..|.+...++. .-|+.-..|.|||..|.++...+.|.
T Consensus 21 q~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 21 QEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred hHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4444555555555432 35689999999999999999888875
No 304
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=75.02 E-value=2.4 Score=55.26 Aligned_cols=46 Identities=26% Similarity=0.563 Sum_probs=42.0
Q ss_pred CCCCCChhhhHHHHHHHHhcCCCchhHHHHhhccccCccccccccCChhhHHHHHHH
Q 000139 1659 SPDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFREL 1715 (2062)
Q Consensus 1659 ~~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~ 1715 (2062)
.+..||.+|.-+|..-||.||-+|..|++-. ..|+..+|-.+|..|
T Consensus 252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hV-----------g~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHV-----------GTKSQEQCILKFLRL 297 (506)
T ss_pred CCCCccHHHHHHHHHHHHHhcccHHHHHhcc-----------CCCCHHHHHHHHHhc
Confidence 4789999999999999999999999999966 269999999999876
No 305
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=74.83 E-value=16 Score=50.68 Aligned_cols=127 Identities=17% Similarity=0.181 Sum_probs=73.7
Q ss_pred CCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHH-HHHHHHHHCCCC
Q 000139 522 KFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLN-WETEFLKWCPAF 600 (2062)
Q Consensus 522 k~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~Q-W~~Efkkw~P~l 600 (2062)
...|-+-|+.++.-++. .+.-.+|.--.|.|||.+.-+++..+.. .| ..+++++|+....+ ..... +.
T Consensus 350 ~~~Ls~~Q~~Av~~i~~---s~~~~il~G~aGTGKTtll~~i~~~~~~-~g--~~V~~~ApTg~Aa~~L~~~~-----g~ 418 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTG---SGDIAVVVGRAGTGKSTMLKAAREAWEA-AG--YRVIGAALSGKAAEGLQAES-----GI 418 (744)
T ss_pred cCCCCHHHHHHHHHHhc---CCCEEEEEecCCCCHHHHHHHHHHHHHh-CC--CeEEEEeCcHHHHHHHHhcc-----CC
Confidence 35789999999987764 2335688888999999887776554432 33 36788889875543 22211 11
Q ss_pred eEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHc-ccCceEEE
Q 000139 601 KILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLN-FNSKRRIL 679 (2062)
Q Consensus 601 kVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~-L~a~~RLL 679 (2062)
...+++. .. ..| .... -.....++||||||-++.... ....+.. .....+++
T Consensus 419 ~a~Ti~~------~~-~~~----------------~~~~--~~~~~~~llIvDEasMv~~~~--~~~Ll~~~~~~~~kli 471 (744)
T TIGR02768 419 ESRTLAS------LE-YAW----------------ANGR--DLLSDKDVLVIDEAGMVGSRQ--MARVLKEAEEAGAKVV 471 (744)
T ss_pred ceeeHHH------HH-hhh----------------ccCc--ccCCCCcEEEEECcccCCHHH--HHHHHHHHHhcCCEEE
Confidence 1111100 00 000 0000 011357899999999996432 2233332 24567899
Q ss_pred EeccCCC
Q 000139 680 LTGTPLQ 686 (2062)
Q Consensus 680 LTGTPLQ 686 (2062)
|.|=|-|
T Consensus 472 LVGD~~Q 478 (744)
T TIGR02768 472 LVGDPEQ 478 (744)
T ss_pred EECChHH
Confidence 9997765
No 306
>PF07529 HSA: HSA; InterPro: IPR006562 This domain of unknown function is found in helicases and other DNA-binding proteins of eukaryotes [].
Probab=74.83 E-value=15 Score=35.54 Aligned_cols=45 Identities=27% Similarity=0.283 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHH
Q 000139 82 LKEEEQRLRKVAVNISKDVKKFWMKIEKLVLYKHQMEVDVRKKKAL 127 (2062)
Q Consensus 82 ~~~~~~~~r~ia~~iak~v~~FW~~iek~v~~K~Q~~leekrKkAL 127 (2062)
.+++....+..|..||++|..||.++++-- -|.+-+.++.|.++|
T Consensus 27 f~~e~k~k~~~a~k~a~~v~~~~~~~~~~~-~k~~er~~k~Rlr~L 71 (73)
T PF07529_consen 27 FKEERKWKRARAKKLAKAVAQYHKNREKEE-QKRIEREEKQRLRAL 71 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHh
Confidence 344555667889999999999999999874 555557888888887
No 307
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=74.54 E-value=19 Score=48.42 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=22.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhcC
Q 000139 546 GILADEMGLGKTIMTIAMLAHLACEKG 572 (2062)
Q Consensus 546 GILADEMGLGKTIQaIALLa~L~~~~g 572 (2062)
-|+.-..|.|||..+-.|...+.|..+
T Consensus 41 yLf~Gp~GtGKTt~Ak~lAkal~c~~~ 67 (559)
T PRK05563 41 YLFSGPRGTGKTSAAKIFAKAVNCLNP 67 (559)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCC
Confidence 367999999999999988888877543
No 308
>PF13245 AAA_19: Part of AAA domain
Probab=74.33 E-value=7.1 Score=38.54 Aligned_cols=43 Identities=23% Similarity=0.227 Sum_probs=32.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHh-cCCCCcEEEEecCCcHHH
Q 000139 546 GILADEMGLGKTIMTIAMLAHLACE-KGIWGPHLIVVPTSVMLN 588 (2062)
Q Consensus 546 GILADEMGLGKTIQaIALLa~L~~~-~g~~Gp~LIVvPtSLL~Q 588 (2062)
.++--..|.|||.+++.++.++... .....++|||+|+....+
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~ 56 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAAD 56 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHH
Confidence 4557889999999999999988743 122568999999965544
No 309
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=74.31 E-value=22 Score=45.40 Aligned_cols=102 Identities=14% Similarity=0.072 Sum_probs=57.9
Q ss_pred HHHHHHHHH-hhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCeEEEEeCCh
Q 000139 531 IGLDWLVTM-YEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSA 609 (2062)
Q Consensus 531 ~GL~WLv~l-~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw~P~lkVl~y~Gs~ 609 (2062)
.+++.++.- +..+.-.+|.-++|.|||..++.++..+... .+++|+|.-.-...|......++.
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~---g~~VlYvs~EEs~~qi~~Ra~rlg------------ 133 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKR---GGKVLYVSGEESPEQIKLRADRLG------------ 133 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEECCcCHHHHHHHHHHcC------------
Confidence 456665531 2223334788899999999998888776542 257888875544555444333321
Q ss_pred hhHHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccC
Q 000139 610 KERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIK 659 (2062)
Q Consensus 610 kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IK 659 (2062)
+.. .. +.+.....+..-...+...+.++||||+.|.+-
T Consensus 134 ---------~~~-~~--l~l~~e~~le~I~~~i~~~~~~lVVIDSIq~l~ 171 (372)
T cd01121 134 ---------IST-EN--LYLLAETNLEDILASIEELKPDLVIIDSIQTVY 171 (372)
T ss_pred ---------CCc-cc--EEEEccCcHHHHHHHHHhcCCcEEEEcchHHhh
Confidence 100 11 122222222222233455688999999999874
No 310
>PRK08116 hypothetical protein; Validated
Probab=73.46 E-value=18 Score=44.07 Aligned_cols=36 Identities=25% Similarity=0.371 Sum_probs=26.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEe
Q 000139 543 RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVV 581 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVv 581 (2062)
+.|.+|.-..|.|||..+.+++.++... + .+++++.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~-~--~~v~~~~ 149 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEK-G--VPVIFVN 149 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHc-C--CeEEEEE
Confidence 3456889999999999999988887653 3 3554443
No 311
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=73.41 E-value=23 Score=38.03 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=24.3
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC
Q 000139 547 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT 583 (2062)
Q Consensus 547 ILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt 583 (2062)
+|.-..|.|||..+..++..+.. ..++++++...
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~e 36 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIAT---KGGKVVYVDIE 36 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHh---cCCEEEEEECC
Confidence 45667999999999888877654 23566666544
No 312
>PRK08727 hypothetical protein; Validated
Probab=73.25 E-value=32 Score=40.94 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=19.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHH
Q 000139 546 GILADEMGLGKTIMTIAMLAHLA 568 (2062)
Q Consensus 546 GILADEMGLGKTIQaIALLa~L~ 568 (2062)
.+|.-..|+|||..+.++...+.
T Consensus 44 l~l~G~~G~GKThL~~a~~~~~~ 66 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAAAE 66 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999998888776653
No 313
>PF13173 AAA_14: AAA domain
Probab=72.67 E-value=19 Score=38.46 Aligned_cols=39 Identities=26% Similarity=0.475 Sum_probs=27.4
Q ss_pred CeeEEEEcCccccCChhhHHHHHHHcccCceEEEEeccCC
Q 000139 646 KWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPL 685 (2062)
Q Consensus 646 ~W~lVILDEAH~IKN~~Sk~~qaL~~L~a~~RLLLTGTPL 685 (2062)
+-.+|||||+|++.++....-..+.. ....++++||+-.
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d~-~~~~~ii~tgS~~ 99 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVDN-GPNIKIILTGSSS 99 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHHh-ccCceEEEEccch
Confidence 46789999999998765444333332 2457999999854
No 314
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=72.57 E-value=17 Score=49.05 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=27.9
Q ss_pred HHHHHHHhhcC---CcEEEEcCCCChHHHHHHHHHHHHHHhc
Q 000139 533 LDWLVTMYEKR---LNGILADEMGLGKTIMTIAMLAHLACEK 571 (2062)
Q Consensus 533 L~WLv~l~~~~---~gGILADEMGLGKTIQaIALLa~L~~~~ 571 (2062)
+..|.+.+.++ ..-|+.-..|.|||..+..|...+.|..
T Consensus 25 ~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~ 66 (624)
T PRK14959 25 KAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCET 66 (624)
T ss_pred HHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccC
Confidence 44444444443 2346799999999999999988887753
No 315
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=72.11 E-value=19 Score=41.79 Aligned_cols=134 Identities=13% Similarity=0.161 Sum_probs=70.5
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCeEEEEeCChhhHHhhhhccCCCCCce
Q 000139 547 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNSFH 626 (2062)
Q Consensus 547 ILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw~P~lkVl~y~Gs~kerk~~r~gw~k~~~fd 626 (2062)
+|.-.+|.|||-++.-+.+++... ..++.+|+--.--.-=..+++.|+--+.+-+|.-.....
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~-------------- 67 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESD-------------- 67 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSC--------------
T ss_pred EEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchh--------------
Confidence 567789999998887777766543 335666665433233344455554333333332111000
Q ss_pred EEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhH---HHHHHHcc-cCceEEEEeccCCCCChHHHHHHHHHhCC
Q 000139 627 VCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQ---RWQTLLNF-NSKRRILLTGTPLQNDLMELWSLMHFLMP 701 (2062)
Q Consensus 627 VVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk---~~qaL~~L-~a~~RLLLTGTPLQNsL~ELwSLL~FL~P 701 (2062)
.-+.+......+...+.++|++|=+-+-.+.... ..+.+..+ .....|.|++|--+..+..+......+.+
T Consensus 68 ----~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~ 142 (196)
T PF00448_consen 68 ----PAEIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFGI 142 (196)
T ss_dssp ----HHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSST
T ss_pred ----hHHHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcccC
Confidence 0011122233345567899999999876543322 22222222 44567888888777666665555555533
No 316
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=72.10 E-value=5.3 Score=48.92 Aligned_cols=43 Identities=21% Similarity=0.183 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhhc--CCcEEEEcCCCChHHHHHHHHHHHHHH
Q 000139 527 EYQHIGLDWLVTMYEK--RLNGILADEMGLGKTIMTIAMLAHLAC 569 (2062)
Q Consensus 527 pYQ~~GL~WLv~l~~~--~~gGILADEMGLGKTIQaIALLa~L~~ 569 (2062)
-+|...|.-|.+-... ..+-++.-..|.|||-++.+|...+.+
T Consensus 39 ~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 39 AGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred cchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 3788888777655443 224477889999999999999888865
No 317
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=71.29 E-value=13 Score=49.91 Aligned_cols=122 Identities=17% Similarity=0.253 Sum_probs=63.6
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHh-cCCCCcEEEEecCC-cHHHHHHH----HHHHCCCCeEEEEeCChhhHHhhhhccC
Q 000139 547 ILADEMGLGKTIMTIAMLAHLACE-KGIWGPHLIVVPTS-VMLNWETE----FLKWCPAFKILTYFGSAKERKFKRQGWL 620 (2062)
Q Consensus 547 ILADEMGLGKTIQaIALLa~L~~~-~g~~Gp~LIVvPtS-LL~QW~~E----fkkw~P~lkVl~y~Gs~kerk~~r~gw~ 620 (2062)
++.-.==-|||-.+.++|+.++.. .|. .+++++|-. +...--.+ +++|+|...+....|. .. --. .
T Consensus 258 VflVPRR~GKTwivv~iI~~ll~s~~Gi--~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe----~I-~i~-f 329 (738)
T PHA03368 258 VFLVPRRHGKTWFLVPLIALALATFRGI--KIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGE----TI-SFS-F 329 (738)
T ss_pred EEEecccCCchhhHHHHHHHHHHhCCCC--EEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCc----EE-EEE-e
Confidence 344446689999887777766543 233 577888763 33333333 4668776444333331 00 000 0
Q ss_pred CCCC-ceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHcc---cCceEEEEecc
Q 000139 621 KPNS-FHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNF---NSKRRILLTGT 683 (2062)
Q Consensus 621 k~~~-fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L---~a~~RLLLTGT 683 (2062)
+.+. -.+... .. ......+...+++|||||||.|+. ..+.++.-+ .....|.+|-|
T Consensus 330 ~nG~kstI~Fa---Sa-rntNsiRGqtfDLLIVDEAqFIk~---~al~~ilp~l~~~n~k~I~ISS~ 389 (738)
T PHA03368 330 PDGSRSTIVFA---SS-HNTNGIRGQDFNLLFVDEANFIRP---DAVQTIMGFLNQTNCKIIFVSST 389 (738)
T ss_pred cCCCccEEEEE---ec-cCCCCccCCcccEEEEechhhCCH---HHHHHHHHHHhccCccEEEEecC
Confidence 1111 112111 01 223345666899999999999985 223333222 34456667655
No 318
>PRK06921 hypothetical protein; Provisional
Probab=71.19 E-value=20 Score=43.63 Aligned_cols=27 Identities=26% Similarity=0.183 Sum_probs=22.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHH
Q 000139 543 RLNGILADEMGLGKTIMTIAMLAHLAC 569 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIALLa~L~~ 569 (2062)
+.+.+|.-.+|.|||..+.|++..+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~ 143 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMR 143 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhh
Confidence 456788999999999999988877754
No 319
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=70.90 E-value=23 Score=46.76 Aligned_cols=42 Identities=26% Similarity=0.314 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhhcCC--cE-EEEcCCCChHHHHHHHHHHHHHHh
Q 000139 529 QHIGLDWLVTMYEKRL--NG-ILADEMGLGKTIMTIAMLAHLACE 570 (2062)
Q Consensus 529 Q~~GL~WLv~l~~~~~--gG-ILADEMGLGKTIQaIALLa~L~~~ 570 (2062)
|...+..|.+....+. ++ ++.-+.|.|||..+..+...+.|.
T Consensus 21 q~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~ 65 (486)
T PRK14953 21 QEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCL 65 (486)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 4555555555555433 33 679999999999988888877664
No 320
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=70.88 E-value=35 Score=39.96 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=20.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHH
Q 000139 543 RLNGILADEMGLGKTIMTIAMLAHLA 568 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIALLa~L~ 568 (2062)
..+.+|.-+.|.|||..+.++...+.
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~ 67 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADAS 67 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 44678999999999998877666543
No 321
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=70.64 E-value=31 Score=43.14 Aligned_cols=48 Identities=13% Similarity=0.060 Sum_probs=39.8
Q ss_pred CCcHHHHHHHHHHHHHhhcCC---cEEEEcCCCChHHHHHHHHHHHHHHhc
Q 000139 524 PLREYQHIGLDWLVTMYEKRL---NGILADEMGLGKTIMTIAMLAHLACEK 571 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~---gGILADEMGLGKTIQaIALLa~L~~~~ 571 (2062)
.++|+|...-..+...+..++ .-++.-..|+||+..+.+|...+.|..
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~ 53 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQN 53 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 478888888888888776554 347789999999999999999999865
No 322
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=70.47 E-value=7.3 Score=48.56 Aligned_cols=130 Identities=19% Similarity=0.213 Sum_probs=71.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhcC---CCCcEEEEecCC-cHHHHHHHH---HHHCCCCeE-EEEeCChhhHHh
Q 000139 543 RLNGILADEMGLGKTIMTIAMLAHLACEKG---IWGPHLIVVPTS-VMLNWETEF---LKWCPAFKI-LTYFGSAKERKF 614 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIALLa~L~~~~g---~~Gp~LIVvPtS-LL~QW~~Ef---kkw~P~lkV-l~y~Gs~kerk~ 614 (2062)
..|-|--...|.|||. ||....+++-. ...-.+-++|+. +..|-..-+ -+|+ +++. +.+-|+...|
T Consensus 129 p~nlIaQsqsGtGKTa---aFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~-~ita~yair~sk~~r-- 202 (477)
T KOG0332|consen 129 PQNLIAQSQSGTGKTA---AFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVVEEMGKFT-ELTASYAIRGSKAKR-- 202 (477)
T ss_pred chhhhhhhcCCCchhH---HHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHHHHhcCce-eeeEEEEecCccccc--
Confidence 3344555678999995 33333333211 112235558885 444433333 3444 2222 2333332111
Q ss_pred hhhccCCCCCceEEEEehhhhhhchhhhhcc---CeeEEEEcCccccCChh---hHHHHHHHccc-CceEEEEecc
Q 000139 615 KRQGWLKPNSFHVCITTYRLIIQDSKVFKRK---KWKYLILDEAHLIKNWK---SQRWQTLLNFN-SKRRILLTGT 683 (2062)
Q Consensus 615 ~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~---~W~lVILDEAH~IKN~~---Sk~~qaL~~L~-a~~RLLLTGT 683 (2062)
. ..-.-+|+|-|..++......++.+ ....+|+|||.++-+.. -+..+..+.+. ....+|.|+|
T Consensus 203 --G---~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSAT 273 (477)
T KOG0332|consen 203 --G---NKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSAT 273 (477)
T ss_pred --C---CcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeech
Confidence 1 1124579999999998776554443 57899999999876543 22233334443 6678888888
No 323
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=70.08 E-value=21 Score=48.19 Aligned_cols=44 Identities=23% Similarity=0.315 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhhcCC--cE-EEEcCCCChHHHHHHHHHHHHHHhcC
Q 000139 529 QHIGLDWLVTMYEKRL--NG-ILADEMGLGKTIMTIAMLAHLACEKG 572 (2062)
Q Consensus 529 Q~~GL~WLv~l~~~~~--gG-ILADEMGLGKTIQaIALLa~L~~~~g 572 (2062)
|...+..|.+....+. .+ |+.-.-|.|||..+.+|...+.|..+
T Consensus 21 q~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~ 67 (576)
T PRK14965 21 QEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQG 67 (576)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCC
Confidence 3444444544444332 33 78899999999999999988887654
No 324
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=70.08 E-value=24 Score=48.44 Aligned_cols=102 Identities=19% Similarity=0.231 Sum_probs=71.2
Q ss_pred CCccccc--cccchHHHHHHHHHHhhhCCCeEEEEeCchHHHH----HHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHh
Q 000139 1056 PDRRLIQ--FDCGKLQELAILLRKLKSDGHRALIFTQMTKMLD----ILEEFISLYGYTYMRLDGSTQPEERQTLMQRFN 1129 (2062)
Q Consensus 1056 Pd~rLiq--~dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLD----ILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN 1129 (2062)
|..++++ ..|||-.+....+......|.++||.+....... .+..++...|++...+.|+++..+|..++....
T Consensus 282 ~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~ 361 (681)
T PRK10917 282 PMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIA 361 (681)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHh
Confidence 3455655 4688987655554444567889999998866544 556666677899999999999999999999887
Q ss_pred cCCCceEEEEeccccccccCcccCCEEEE
Q 000139 1130 TNPKIFLFILSTRSGGVGINLVGADTVIF 1158 (2062)
Q Consensus 1130 ~D~~IfVfLLSTrAGG~GLNLT~ADtVIf 1158 (2062)
. +.+.|+|.+.......+++.....||+
T Consensus 362 ~-g~~~IvVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 362 S-GEADIVIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred C-CCCCEEEchHHHhcccchhcccceEEE
Confidence 5 456665554434444566666666655
No 325
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=70.03 E-value=19 Score=50.61 Aligned_cols=35 Identities=23% Similarity=0.446 Sum_probs=24.7
Q ss_pred HHHHHHHh--hcCCcEEEEcCCCChHHHHHHHHHHHH
Q 000139 533 LDWLVTMY--EKRLNGILADEMGLGKTIMTIAMLAHL 567 (2062)
Q Consensus 533 L~WLv~l~--~~~~gGILADEMGLGKTIQaIALLa~L 567 (2062)
+.+++... ....|.||.-+.|.|||..+=++...+
T Consensus 196 i~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i 232 (852)
T TIGR03345 196 IRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRI 232 (852)
T ss_pred HHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHH
Confidence 66666533 234577999999999998876665554
No 326
>PRK06893 DNA replication initiation factor; Validated
Probab=69.57 E-value=27 Score=41.31 Aligned_cols=24 Identities=17% Similarity=0.043 Sum_probs=19.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHH
Q 000139 546 GILADEMGLGKTIMTIAMLAHLAC 569 (2062)
Q Consensus 546 GILADEMGLGKTIQaIALLa~L~~ 569 (2062)
-+|.-..|+|||..+.++...+..
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~~ 65 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYLL 65 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 378899999999988877766543
No 327
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=69.46 E-value=11 Score=51.84 Aligned_cols=74 Identities=24% Similarity=0.256 Sum_probs=49.7
Q ss_pred EEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEEEecCCC-----ChhhHHHHHHhhhccCC-cC
Q 000139 1109 YMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDW-----NPAMDQQAQDRCHRIGQ-TR 1182 (2062)
Q Consensus 1109 y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIfyD~dW-----NPa~d~QA~gRahRIGQ-TR 1182 (2062)
+...+-+.+.++|..+=..|.. +.++| ++.|.....|+||. |.+||+=-|.. .-....|.+||++|.|= |.
T Consensus 525 vAyHhaGLT~eER~~iE~afr~-g~i~v-l~aTSTlaaGVNLP-ArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~ 601 (1008)
T KOG0950|consen 525 VAYHHAGLTSEEREIIEAAFRE-GNIFV-LVATSTLAAGVNLP-ARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTL 601 (1008)
T ss_pred ceecccccccchHHHHHHHHHh-cCeEE-EEecchhhccCcCC-cceeEEeCCccccchhhhhhHHhhhhhhhhcccccC
Confidence 3344456666788766667764 67777 45566688999997 56777655532 33566899999999983 44
Q ss_pred cEE
Q 000139 1183 EVH 1185 (2062)
Q Consensus 1183 dV~ 1185 (2062)
.-.
T Consensus 602 Gds 604 (1008)
T KOG0950|consen 602 GDS 604 (1008)
T ss_pred cce
Confidence 433
No 328
>PRK05642 DNA replication initiation factor; Validated
Probab=69.38 E-value=24 Score=42.05 Aligned_cols=37 Identities=22% Similarity=0.426 Sum_probs=23.6
Q ss_pred eeEEEEcCccccCChh---hHHHHHHHcc-cCceEEEEecc
Q 000139 647 WKYLILDEAHLIKNWK---SQRWQTLLNF-NSKRRILLTGT 683 (2062)
Q Consensus 647 W~lVILDEAH~IKN~~---Sk~~qaL~~L-~a~~RLLLTGT 683 (2062)
.++||||+.|.+.+.. ...+..+..+ ....++++|+|
T Consensus 98 ~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 98 YELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred CCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 4789999999986532 2233333333 24567888887
No 329
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=69.02 E-value=21 Score=50.64 Aligned_cols=129 Identities=18% Similarity=0.149 Sum_probs=71.6
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCeE
Q 000139 523 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKI 602 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw~P~lkV 602 (2062)
..|-+-|+.+|..++. .+.-.+|---.|.|||.+.-++ ..+....| ..+++++|+.....= |..-. +...
T Consensus 345 ~~Ls~eQr~Av~~il~---s~~v~vv~G~AGTGKTT~l~~~-~~~~e~~G--~~V~~~ApTGkAA~~---L~e~t-Gi~a 414 (988)
T PRK13889 345 LVLSGEQADALAHVTD---GRDLGVVVGYAGTGKSAMLGVA-REAWEAAG--YEVRGAALSGIAAEN---LEGGS-GIAS 414 (988)
T ss_pred CCCCHHHHHHHHHHhc---CCCeEEEEeCCCCCHHHHHHHH-HHHHHHcC--CeEEEecCcHHHHHH---Hhhcc-Ccch
Confidence 4689999999987764 1224577778999999875443 33333333 357778898654322 21100 1100
Q ss_pred EEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHcc-cCceEEEEe
Q 000139 603 LTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNF-NSKRRILLT 681 (2062)
Q Consensus 603 l~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L-~a~~RLLLT 681 (2062)
.++ ... ..+|.. .. ..-..-++||||||-++... ...+.+... ....+++|.
T Consensus 415 ~TI------~sl-l~~~~~----------------~~--~~l~~~~vlIVDEASMv~~~--~m~~LL~~a~~~garvVLV 467 (988)
T PRK13889 415 RTI------ASL-EHGWGQ----------------GR--DLLTSRDVLVIDEAGMVGTR--QLERVLSHAADAGAKVVLV 467 (988)
T ss_pred hhH------HHH-Hhhhcc----------------cc--cccccCcEEEEECcccCCHH--HHHHHHHhhhhCCCEEEEE
Confidence 000 000 011110 00 01124589999999999643 233333333 567899999
Q ss_pred ccCCCCC
Q 000139 682 GTPLQND 688 (2062)
Q Consensus 682 GTPLQNs 688 (2062)
|=|-|-.
T Consensus 468 GD~~QLp 474 (988)
T PRK13889 468 GDPQQLQ 474 (988)
T ss_pred CCHHHcC
Confidence 9887743
No 330
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=68.39 E-value=55 Score=42.24 Aligned_cols=125 Identities=14% Similarity=0.182 Sum_probs=63.8
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC----CcHHHHHHHHHHHCCCCeEEEEeCChhhHHhhhhccCCC
Q 000139 547 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT----SVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKP 622 (2062)
Q Consensus 547 ILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt----SLL~QW~~Efkkw~P~lkVl~y~Gs~kerk~~r~gw~k~ 622 (2062)
.|.-..|.|||..+..+...+. ..+ ..+++|.-- ..+.||.. |+....
T Consensus 245 ~LVGptGvGKTTTiaKLA~~L~-~~G--kkVglI~aDt~RiaAvEQLk~----yae~lg--------------------- 296 (436)
T PRK11889 245 ALIGPTGVGKTTTLAKMAWQFH-GKK--KTVGFITTDHSRIGTVQQLQD----YVKTIG--------------------- 296 (436)
T ss_pred EEECCCCCcHHHHHHHHHHHHH-HcC--CcEEEEecCCcchHHHHHHHH----HhhhcC---------------------
Confidence 4566699999988777666554 232 255655542 24455543 321111
Q ss_pred CCceEE-EEehhhhhhchhhhhc-cCeeEEEEcCccccCChhhH---HHHHHHcccCc-eEEEEeccCCCCChHHHHHHH
Q 000139 623 NSFHVC-ITTYRLIIQDSKVFKR-KKWKYLILDEAHLIKNWKSQ---RWQTLLNFNSK-RRILLTGTPLQNDLMELWSLM 696 (2062)
Q Consensus 623 ~~fdVV-ITSYe~l~~d~~~L~r-~~W~lVILDEAH~IKN~~Sk---~~qaL~~L~a~-~RLLLTGTPLQNsL~ELwSLL 696 (2062)
+.++ +.+...+......+.. .++++||||-+=+..+.... ..+.+...... ..|.|++|--.+.+.++...+
T Consensus 297 --ipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F 374 (436)
T PRK11889 297 --FEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNF 374 (436)
T ss_pred --CcEEecCCHHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHh
Confidence 1111 1222333333333332 35899999998664432221 22222222222 345577776666666666666
Q ss_pred HHhCC
Q 000139 697 HFLMP 701 (2062)
Q Consensus 697 ~FL~P 701 (2062)
+.+.+
T Consensus 375 ~~~~i 379 (436)
T PRK11889 375 KDIHI 379 (436)
T ss_pred cCCCC
Confidence 65433
No 331
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=68.31 E-value=17 Score=45.26 Aligned_cols=123 Identities=20% Similarity=0.236 Sum_probs=64.5
Q ss_pred EEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCeEEEEeCChhhHHhhhhccCCCCCceE
Q 000139 548 LADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNSFHV 627 (2062)
Q Consensus 548 LADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw~P~lkVl~y~Gs~kerk~~r~gw~k~~~fdV 627 (2062)
+.--.|.||| ++|+=|++.+...|. ++||++--.--.-=..+++-|.-.+.+-++.+.... +..
T Consensus 144 ~vGVNG~GKT-TTIaKLA~~l~~~g~--~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~-----------DpA-- 207 (340)
T COG0552 144 FVGVNGVGKT-TTIAKLAKYLKQQGK--SVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGA-----------DPA-- 207 (340)
T ss_pred EEecCCCchH-hHHHHHHHHHHHCCC--eEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCC-----------CcH--
Confidence 4666899999 566777777665543 455554332222244455566533333333221000 000
Q ss_pred EEEehhhhhhchhhhhccCeeEEEEcCccccCChhh------HHHHHHHcc--cCceEEEE--eccCCCCChHH
Q 000139 628 CITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKS------QRWQTLLNF--NSKRRILL--TGTPLQNDLME 691 (2062)
Q Consensus 628 VITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~S------k~~qaL~~L--~a~~RLLL--TGTPLQNsL~E 691 (2062)
..+......-+..++++||+|=|=|+-|... +..+.+... .+++.++| =||-=||.+..
T Consensus 208 -----aVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~Q 276 (340)
T COG0552 208 -----AVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQ 276 (340)
T ss_pred -----HHHHHHHHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHH
Confidence 0111222334557899999999999977432 222222222 34454444 48888887654
No 332
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=67.71 E-value=26 Score=45.64 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=20.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHH
Q 000139 546 GILADEMGLGKTIMTIAMLAHLAC 569 (2062)
Q Consensus 546 GILADEMGLGKTIQaIALLa~L~~ 569 (2062)
.+|.-..|+|||..+-++...+..
T Consensus 151 l~l~G~~G~GKThL~~ai~~~~~~ 174 (450)
T PRK00149 151 LFIYGGVGLGKTHLLHAIGNYILE 174 (450)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 578999999999999888777654
No 333
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=67.43 E-value=31 Score=45.40 Aligned_cols=147 Identities=17% Similarity=0.097 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHh-----hcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcE-EEEecCCc-HHHHHHHHHHHC--
Q 000139 527 EYQHIGLDWLVTMY-----EKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPH-LIVVPTSV-MLNWETEFLKWC-- 597 (2062)
Q Consensus 527 pYQ~~GL~WLv~l~-----~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~-LIVvPtSL-L~QW~~Efkkw~-- 597 (2062)
|+|+..+..+.-.. ..-.-++|.-.=|=|||..+.++..+...-.|..|+. ++++++.- -..=-..+..++
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 57776665554321 1111346666788999998888777666555666664 44445421 111123333333
Q ss_pred -CCCeEEEEeCChhhHHhhhhcc--CCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHcc--
Q 000139 598 -PAFKILTYFGSAKERKFKRQGW--LKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNF-- 672 (2062)
Q Consensus 598 -P~lkVl~y~Gs~kerk~~r~gw--~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L-- 672 (2062)
|.+.... +. +..+..+... ...++ .+..+..+.......+..++|+||+|..++. ..+.++..-
T Consensus 81 ~~~l~~~~--~~-~~~~~~~~~i~~~~~~s------~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~--~~~~~l~~g~~ 149 (477)
T PF03354_consen 81 SPELRKRK--KP-KIIKSNKKEIEFPKTGS------FFKALSSDADSLDGLNPSLAIFDELHAHKDD--ELYDALESGMG 149 (477)
T ss_pred Chhhccch--hh-hhhhhhceEEEEcCCCc------EEEEEecCCCCccCCCCceEEEeCCCCCCCH--HHHHHHHhhhc
Confidence 3222111 00 0000000000 00111 1122234455566678899999999999873 345554432
Q ss_pred -cCceEEEEeccC
Q 000139 673 -NSKRRILLTGTP 684 (2062)
Q Consensus 673 -~a~~RLLLTGTP 684 (2062)
+....++.+.|+
T Consensus 150 ~r~~pl~~~ISTa 162 (477)
T PF03354_consen 150 ARPNPLIIIISTA 162 (477)
T ss_pred cCCCceEEEEeCC
Confidence 223444444554
No 334
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=67.19 E-value=20 Score=40.28 Aligned_cols=48 Identities=21% Similarity=0.200 Sum_probs=35.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHH
Q 000139 546 GILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKW 596 (2062)
Q Consensus 546 GILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw 596 (2062)
.+|+-+.|.|||..++.++...+. .| .++++|.......+....+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~-~g--~~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA-RG--EPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-CC--CcEEEEECCCCHHHHHHHHHHc
Confidence 367888999999999998887653 33 4788888776666666555554
No 335
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=67.08 E-value=15 Score=49.08 Aligned_cols=108 Identities=27% Similarity=0.365 Sum_probs=79.6
Q ss_pred CeEEEEeCchHHHHHHHHHHHH----cCC----cEEEecCCCCHHHHHHHHHHHhcC-CCceEEEEeccccccccCcccC
Q 000139 1083 HRALIFTQMTKMLDILEEFISL----YGY----TYMRLDGSTQPEERQTLMQRFNTN-PKIFLFILSTRSGGVGINLVGA 1153 (2062)
Q Consensus 1083 hKVLIFSQ~t~mLDILe~~L~~----~Gi----~y~RLDGsTs~eqRq~lmerFN~D-~~IfVfLLSTrAGG~GLNLT~A 1153 (2062)
--+|||=.-..-++.+...|.. .+- -++-++|+.+.++.- .-|..- +.++=+|+||..+-..|.+.|.
T Consensus 259 GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~---rvF~p~p~g~RKvIlsTNIAETSlTI~GI 335 (674)
T KOG0922|consen 259 GDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQS---RVFDPAPPGKRKVILSTNIAETSLTIDGI 335 (674)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhh---ccccCCCCCcceEEEEcceeeeeEEecce
Confidence 4799997777666655555533 222 246789999987654 446553 3677679999999999999887
Q ss_pred CEEEEecC------CCCh-----------hhHHHHHHhhhccCCcCcEEEEEEEeCCCH
Q 000139 1154 DTVIFYDS------DWNP-----------AMDQQAQDRCHRIGQTREVHIYRLISESTI 1195 (2062)
Q Consensus 1154 DtVIfyD~------dWNP-----------a~d~QA~gRahRIGQTRdV~VYRLIse~TI 1195 (2062)
-.|| |+ .||| ..-+||.-|++|-|.|.+..+|||.++.-.
T Consensus 336 ~YVV--DsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 336 RYVV--DSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAY 392 (674)
T ss_pred EEEE--cCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHH
Confidence 6664 44 3555 355789999999999999999999998766
No 336
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=66.51 E-value=9.6 Score=44.40 Aligned_cols=41 Identities=34% Similarity=0.525 Sum_probs=27.3
Q ss_pred cCeeEEEEcCccccCChhhHHHHHHHcccCceEEEEeccCCCCC
Q 000139 645 KKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQND 688 (2062)
Q Consensus 645 ~~W~lVILDEAH~IKN~~Sk~~qaL~~L~a~~RLLLTGTPLQNs 688 (2062)
...+++||||++.+-.. ....+..+.....+.|-|=|.|-.
T Consensus 61 ~~~~~liiDE~~~~~~g---~l~~l~~~~~~~~~~l~GDp~Q~~ 101 (234)
T PF01443_consen 61 KSYDTLIIDEAQLLPPG---YLLLLLSLSPAKNVILFGDPLQIP 101 (234)
T ss_pred CcCCEEEEeccccCChH---HHHHHHhhccCcceEEEECchhcc
Confidence 35799999999988532 222244444445677789999864
No 337
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.26 E-value=30 Score=46.94 Aligned_cols=44 Identities=16% Similarity=0.154 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhhcCC---cEEEEcCCCChHHHHHHHHHHHHHHhc
Q 000139 528 YQHIGLDWLVTMYEKRL---NGILADEMGLGKTIMTIAMLAHLACEK 571 (2062)
Q Consensus 528 YQ~~GL~WLv~l~~~~~---gGILADEMGLGKTIQaIALLa~L~~~~ 571 (2062)
.|...+..|.+.+..+. .-|+.-..|.|||..|..|...+.|..
T Consensus 20 GQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~ 66 (620)
T PRK14954 20 AQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQR 66 (620)
T ss_pred CcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence 35666666766665532 346899999999999999998888853
No 338
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=66.20 E-value=22 Score=46.48 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=18.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHH
Q 000139 546 GILADEMGLGKTIMTIAMLAHLAC 569 (2062)
Q Consensus 546 GILADEMGLGKTIQaIALLa~L~~ 569 (2062)
.+|.-+.|+|||..+-|+..++..
T Consensus 144 l~i~G~~G~GKTHLl~Ai~~~l~~ 167 (450)
T PRK14087 144 LFIYGESGMGKTHLLKAAKNYIES 167 (450)
T ss_pred eEEECCCCCcHHHHHHHHHHHHHH
Confidence 468899999999888777665543
No 339
>PRK11823 DNA repair protein RadA; Provisional
Probab=66.14 E-value=37 Score=44.41 Aligned_cols=102 Identities=13% Similarity=0.091 Sum_probs=58.4
Q ss_pred HHHHHHHH-HhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCeEEEEeCCh
Q 000139 531 IGLDWLVT-MYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSA 609 (2062)
Q Consensus 531 ~GL~WLv~-l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw~P~lkVl~y~Gs~ 609 (2062)
.+++.++. -+..+.-.+|.-++|.|||..++.++..+.. . .+++|.|.-.-...|......++.-.+.
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~-~--g~~vlYvs~Ees~~qi~~ra~rlg~~~~-------- 135 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAA-A--GGKVLYVSGEESASQIKLRAERLGLPSD-------- 135 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHh-c--CCeEEEEEccccHHHHHHHHHHcCCChh--------
Confidence 45666654 2233334478999999999999988887653 2 2477888765555555444433211100
Q ss_pred hhHHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccC
Q 000139 610 KERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIK 659 (2062)
Q Consensus 610 kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IK 659 (2062)
. +.+..-..+..-...+...+.++||||+.+.+.
T Consensus 136 --------------~--l~~~~e~~l~~i~~~i~~~~~~lVVIDSIq~l~ 169 (446)
T PRK11823 136 --------------N--LYLLAETNLEAILATIEEEKPDLVVIDSIQTMY 169 (446)
T ss_pred --------------c--EEEeCCCCHHHHHHHHHhhCCCEEEEechhhhc
Confidence 0 111111112222233455678999999999774
No 340
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=65.72 E-value=12 Score=49.25 Aligned_cols=125 Identities=18% Similarity=0.197 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhhcCC---cEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCeEEEE
Q 000139 529 QHIGLDWLVTMYEKRL---NGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTY 605 (2062)
Q Consensus 529 Q~~GL~WLv~l~~~~~---gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw~P~lkVl~y 605 (2062)
|...+..|......++ +-++.-.-|.|||-.+=-+...+-|..+..+-....|..+ .++..- ....++-+
T Consensus 21 Qe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C------k~I~~g-~~~DviEi 93 (515)
T COG2812 21 QEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC------KEINEG-SLIDVIEI 93 (515)
T ss_pred cHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh------HhhhcC-Ccccchhh
Confidence 4445555555554443 3478889999999888778888877654333333344332 233221 11222222
Q ss_pred eC-----ChhhHHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHcc---cCceE
Q 000139 606 FG-----SAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNF---NSKRR 677 (2062)
Q Consensus 606 ~G-----s~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L---~a~~R 677 (2062)
.+ -...|.....-. ..-...++++.||||+|++. ...+.+|... ...+.
T Consensus 94 DaASn~gVddiR~i~e~v~--------------------y~P~~~ryKVyiIDEvHMLS---~~afNALLKTLEEPP~hV 150 (515)
T COG2812 94 DAASNTGVDDIREIIEKVN--------------------YAPSEGRYKVYIIDEVHMLS---KQAFNALLKTLEEPPSHV 150 (515)
T ss_pred hhhhccChHHHHHHHHHhc--------------------cCCccccceEEEEecHHhhh---HHHHHHHhcccccCccCe
Confidence 11 111111111100 00123578999999999995 4556666543 45565
Q ss_pred EEEecc
Q 000139 678 ILLTGT 683 (2062)
Q Consensus 678 LLLTGT 683 (2062)
+++=+|
T Consensus 151 ~FIlAT 156 (515)
T COG2812 151 KFILAT 156 (515)
T ss_pred EEEEec
Confidence 555555
No 341
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=65.45 E-value=20 Score=47.76 Aligned_cols=132 Identities=20% Similarity=0.279 Sum_probs=68.9
Q ss_pred HhhcCCcEEEEcCCCChHHHHHHHHHHHHHH-hcCCCCcEEEEecCC-----cHHHHHHHHHHHCCCCeEEEEeCChhhH
Q 000139 539 MYEKRLNGILADEMGLGKTIMTIAMLAHLAC-EKGIWGPHLIVVPTS-----VMLNWETEFLKWCPAFKILTYFGSAKER 612 (2062)
Q Consensus 539 l~~~~~gGILADEMGLGKTIQaIALLa~L~~-~~g~~Gp~LIVvPtS-----LL~QW~~Efkkw~P~lkVl~y~Gs~ker 612 (2062)
.++++-.+.|. .--=|||-..+++|+.++. -.|+ .+..|+--- ++..-...+.+|+|.-.+..--|..-.
T Consensus 199 ~FKQkaTVFLV-PRRHGKTWf~VpiIsllL~s~~gI--~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~tI~- 274 (668)
T PHA03372 199 IFKQKATVFLV-PRRHGKTWFIIPIISFLLKNIIGI--SIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDNVIS- 274 (668)
T ss_pred HhhccceEEEe-cccCCceehHHHHHHHHHHhhcCc--eEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCcEEE-
Confidence 34455556654 3567999999999888766 2343 456666432 333345556899987554222111000
Q ss_pred HhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHcccCceEEEEecc
Q 000139 613 KFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGT 683 (2062)
Q Consensus 613 k~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L~a~~RLLLTGT 683 (2062)
....+ . ..-.+..++|+ ...++.-.|++|++||||-|+-..-...--+...+....+.+|-|
T Consensus 275 -~s~pg--~-Kst~~fasc~n-----~NsiRGQ~fnll~VDEA~FI~~~a~~tilgfm~q~~~KiIfISS~ 336 (668)
T PHA03372 275 -IDHRG--A-KSTALFASCYN-----TNSIRGQNFHLLLVDEAHFIKKDAFNTILGFLAQNTTKIIFISST 336 (668)
T ss_pred -EecCC--C-cceeeehhhcc-----CccccCCCCCEEEEehhhccCHHHHHHhhhhhcccCceEEEEeCC
Confidence 00000 0 00011112122 234666789999999999997432222222222244456666644
No 342
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=64.77 E-value=20 Score=46.36 Aligned_cols=46 Identities=20% Similarity=0.169 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcC
Q 000139 527 EYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKG 572 (2062)
Q Consensus 527 pYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g 572 (2062)
.-+...|.-|+...+++.|.|+--..|.|||..+.++-.+.++..|
T Consensus 193 r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~l~~~~a~~sG 238 (449)
T TIGR02688 193 RQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNNLSPYVILISG 238 (449)
T ss_pred HHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC
Confidence 3444455555555678899999999999999999887766445444
No 343
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=63.96 E-value=25 Score=49.03 Aligned_cols=110 Identities=25% Similarity=0.340 Sum_probs=80.2
Q ss_pred CCeEEEEeCchHHHHHHHHHHHH----cCCcEEEecCCCCHHHHHHHHHHHhcCCCc-eEEEEeccccccccCcccCCEE
Q 000139 1082 GHRALIFTQMTKMLDILEEFISL----YGYTYMRLDGSTQPEERQTLMQRFNTNPKI-FLFILSTRSGGVGINLVGADTV 1156 (2062)
Q Consensus 1082 GhKVLIFSQ~t~mLDILe~~L~~----~Gi~y~RLDGsTs~eqRq~lmerFN~D~~I-fVfLLSTrAGG~GLNLT~ADtV 1156 (2062)
..-+|||=.-..-++-....|.. ..+..+-|+|..+.++.++ -|+..+.- +=+++||..+-.+|++.+.-.|
T Consensus 259 ~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~r---vF~p~~~~~RKVVlATNIAETSLTI~gIr~V 335 (845)
T COG1643 259 SGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVR---VFEPAPGGKRKVVLATNIAETSLTIPGIRYV 335 (845)
T ss_pred CCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHh---hcCCCCCCcceEEEEccccccceeeCCeEEE
Confidence 45899998888877777777765 3467888999999887776 56653332 3248999999999999988777
Q ss_pred EEecC------CCChh-----------hHHHHHHhhhccCCcCcEEEEEEEeCCCHH
Q 000139 1157 IFYDS------DWNPA-----------MDQQAQDRCHRIGQTREVHIYRLISESTIE 1196 (2062)
Q Consensus 1157 IfyD~------dWNPa-----------~d~QA~gRahRIGQTRdV~VYRLIse~TIE 1196 (2062)
| |+ -|||. .-+.|.-|++|-|.+.+=..|||.+++..+
T Consensus 336 I--DsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~ 390 (845)
T COG1643 336 I--DSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFL 390 (845)
T ss_pred e--cCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHH
Confidence 6 33 23432 234566677777778899999999985544
No 344
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=63.89 E-value=21 Score=47.57 Aligned_cols=107 Identities=22% Similarity=0.361 Sum_probs=69.7
Q ss_pred CCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEEEecC
Q 000139 1082 GHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDS 1161 (2062)
Q Consensus 1082 GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIfyD~ 1161 (2062)
-+||||-|+ |-+.-|...||.|+.=.|-.+ +.-||..-.+-. +.++
T Consensus 623 vRK~IvATN------IAETSLTi~gI~yVID~Gy~K-------~kvyn~~~G~D~-------------------L~~~-- 668 (1042)
T KOG0924|consen 623 VRKCIVATN------IAETSLTIPGIRYVIDTGYCK-------LKVYNPRIGMDA-------------------LQIV-- 668 (1042)
T ss_pred ceeEEEecc------chhhceeecceEEEEecCcee-------eeecccccccce-------------------eEEE--
Confidence 368998886 456677888998887777665 445554222211 1111
Q ss_pred CCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHH---HHHHHHHHHHHHhcCCCCccccccCChhhhh
Q 000139 1162 DWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKK---ANQKRALDDLVIQSGGYNTEFFKKLDPMELF 1233 (2062)
Q Consensus 1162 dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkk---a~qKr~L~~~vIq~g~ft~~~fk~~di~eLF 1233 (2062)
|..-++|--|++|-|.|.|-..|||.++++...-++.- --|+..|.++|+. ++.+++.+|.
T Consensus 669 ---pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVLl--------LkslgV~dll 732 (1042)
T KOG0924|consen 669 ---PISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVLL--------LKSLGVDDLL 732 (1042)
T ss_pred ---echhccchhhccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHHH--------HHhcChhhhh
Confidence 44456667777788889999999999999887777632 1255667777763 4555555543
No 345
>PRK11054 helD DNA helicase IV; Provisional
Probab=63.63 E-value=16 Score=50.19 Aligned_cols=69 Identities=19% Similarity=0.032 Sum_probs=49.6
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCC-CCcEEEEecCCcHHHHHHH-HHHHC
Q 000139 523 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGI-WGPHLIVVPTSVMLNWETE-FLKWC 597 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~-~Gp~LIVvPtSLL~QW~~E-fkkw~ 597 (2062)
.+|.+-|+.+|.. ..+...|+| -.|.|||.+.++-++++....+. ...+|+++.+....+...+ |...+
T Consensus 195 ~~L~~~Q~~av~~-----~~~~~lV~a-gaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 195 SPLNPSQARAVVN-----GEDSLLVLA-GAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCCHHHHHHHhC-----CCCCeEEEE-eCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 4589999999952 223334444 59999999999999998765432 3478999999887776665 54443
No 346
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=63.34 E-value=18 Score=43.47 Aligned_cols=52 Identities=17% Similarity=0.104 Sum_probs=34.5
Q ss_pred hhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHH
Q 000139 540 YEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEF 593 (2062)
Q Consensus 540 ~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Ef 593 (2062)
+..+.-.+|+-..|.|||..++.++..+....+ .+++++.--.-..++...+
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g--~~vl~iS~E~~~~~~~~r~ 78 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQHG--VRVGTISLEEPVVRTARRL 78 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcC--ceEEEEEcccCHHHHHHHH
Confidence 334555688999999999999998887765423 3677776544333433333
No 347
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=63.08 E-value=53 Score=48.20 Aligned_cols=371 Identities=15% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHhhhhhhHHHHHHHHHhhhhh
Q 000139 56 KLAQAKKVALRASKGMLDQASRGEKKLKEEEQRLRKVAVNISK---DVKKFWMKIEKLVLYKHQMEVDVRKKKALDKQLE 132 (2062)
Q Consensus 56 k~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ia~~iak---~v~~FW~~iek~v~~K~Q~~leekrKkALd~~L~ 132 (2062)
++-.+-++-+++.-.++..+....+.+-.--.--+-++..|.- -+.+|.+-++-|++|=.-.-----|---.=.-|=
T Consensus 3710 ~~~~~~kvlra~~~k~~~~~ls~lke~~~sss~~~~~~~ll~~~lpv~~~~~n~~~~vld~~~~~~~~~~~~l~~istl~ 3789 (4600)
T COG5271 3710 EMSSCFKVLRAFNLKFQSMKLSSLKEKLRSSSVDKMSCQLLMLFLPVCEQFINLAESVLDYFINVHNSNLDSLSKISTLF 3789 (4600)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHH
Q ss_pred HHhchhhhhHHHHHhhhcCCCCCCCCCCCCCCCCccccccccCCCCCCCcCccccccchhhccCCCCCCCCccCCCcccc
Q 000139 133 FLLGQTERYSSMLAENLVDSHKPVQQSPMREQPGIQYKEADENGAEEPGVQSKEADEDDAEQHSGFEPQLDAADIDEEYD 212 (2062)
Q Consensus 133 fivgqTEkys~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ddef~ 212 (2062)
|+|....--| +..|...+...... +..+.+++.+..|---+
T Consensus 3790 ~~va~ngfcs---------p~~p~e~~n~~~le------------------------------~gtglg~g~gaed~~~~ 3830 (4600)
T COG5271 3790 FMVANNGFCS---------PDLPQEKSNSGELE------------------------------SGTGLGSGVGAEDITNT 3830 (4600)
T ss_pred HHHHhCCCCC---------CCCcccccCccccc------------------------------cCCCCCCCccccccccc
Q ss_pred CCCCCCCccchhchHHHHhhhchHHHHHHHHHhhcCCCCCHHHHHhhhcccccCCCCcccCCCCCCCCcccccccccCCC
Q 000139 213 VHSEDESEDDEHTIEEDEALITEEERKEELEALHNETDIPLQELLKRYAVDKVGRESSAEMGEDEAEPTVVEEGHVQGNG 292 (2062)
Q Consensus 213 ~~~~ee~eDDEeTIEeeE~~~~~~d~~~ELe~L~~E~ElPLEELL~~y~~~~~~~~~~~~~~~~~~e~~~~~e~~~~~~~ 292 (2062)
.+.|++-+.+--.-..+++..-+++.++||+ ++-+..-.++.-+|.+....+++..+=
T Consensus 3831 l~edddl~e~aneed~~~~~d~de~ea~ele----------------------~dm~g~~~ds~~~enen~dse~e~qdl 3888 (4600)
T COG5271 3831 LNEDDDLEELANEEDTANQSDLDESEARELE----------------------SDMNGVTKDSVVSENENSDSEEENQDL 3888 (4600)
T ss_pred cccccchhhhccccccccccccchHHHHHhh----------------------hccccccccccccccCCCcchhhhhhh
Q ss_pred CCcccCCccCCCCcccccccccCCCCcccccccccccccccccccccCCCchhhhccccCCCCccCccccccCCCCCCCc
Q 000139 293 NDLLAGSKLDTSGSLVRRCDEINGGLSISENHLLDIETSQVRDTSKKSGASTQKQALYDFSDEQEDGDFVVATGEDKDDE 372 (2062)
Q Consensus 293 ~~~~~~~e~d~~~~~~~~~~e~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~deeED~df~~~e~e~~DdE 372 (2062)
++....-.+|-+.....--=+.......-|++-.+-+.-.+-+.+....-.++-.+-.+...+++.++...+++.+-|||
T Consensus 3889 deevndi~ed~~nslneklwde~~~ed~~eteqk~~eqsa~nne~~~~~kedd~~a~ed~d~q~~~de~e~~ddvg~dde 3968 (4600)
T COG5271 3889 DEEVNDIPEDLSNSLNEKLWDEPNEEDLLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDE 3968 (4600)
T ss_pred hhhhhcCCcccchhhhHhhcCCcchhhhhhhhhhhhhhhhhcchhhccccccCCCCccccchhhhcchhhhccccCcccc
Q ss_pred cchHHHHHHhhhcCCChHHHHHHhhccCCCCHHHHHHHhhcccccccCCcccccccccccCCCCCCCCcccccccccccc
Q 000139 373 TTLSEEEELAKADSNNYIDEIALLQKESEIPVEELLARYRKDMKINKISEDESDYASALSDDLSDSPAHEDGELKLENDF 452 (2062)
Q Consensus 373 ~Ti~eEE~~e~~~~~d~~~E~~~L~~e~~m~ieeLla~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (2062)
-.-.++|..+ .+..|+..|.-.-.|.+++--.--.++...++-+-+-.++....+|.+.|+|.++++.-++.+..
T Consensus 3969 iq~d~~en~~-----~~~pe~e~ldlpedl~ld~~~~d~~~d~dl~dmdme~~den~eead~e~dep~~ded~~e~~~tl 4043 (4600)
T COG5271 3969 IQPDIQENNS-----QPPPENEDLDLPEDLKLDEKEGDVSKDSDLEDMDMEAADENKEEADAEKDEPMQDEDPLEENNTL 4043 (4600)
T ss_pred cCcchhcccC-----CCCCccccCCCchhcCCccccccccccCChhhccchhcccchhhcccccCCCCCCCCcccccccc
Q ss_pred CCCCCCCCCccccCCcccccccCCCcccccccchhhhhHH
Q 000139 453 MDGNVDPGASQLVMLPLTEKQEGGSEKKSEEGRESENRIA 492 (2062)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~ 492 (2062)
+++........+.-+.-.+.++++++...+.....++.++
T Consensus 4044 ded~~~dd~~dla~dd~k~nedg~ee~~~~nee~~~~~~~ 4083 (4600)
T COG5271 4044 DEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVK 4083 (4600)
T ss_pred chhhccchhhhhhcccccccccchhhhhhcchhhhhcccc
No 348
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=63.03 E-value=24 Score=46.51 Aligned_cols=65 Identities=18% Similarity=0.175 Sum_probs=45.8
Q ss_pred CcHHHHHHHHHHHHHhh--------cCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHH
Q 000139 525 LREYQHIGLDWLVTMYE--------KRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLK 595 (2062)
Q Consensus 525 LRpYQ~~GL~WLv~l~~--------~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkk 595 (2062)
.+.+.++.+.|.+.... ...|.+|+-..|.|||+.+-++...+. .+++-|-...++..|.-|..+
T Consensus 250 ~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~------~~fi~v~~~~l~sk~vGesek 322 (494)
T COG0464 250 AKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESR------SRFISVKGSELLSKWVGESEK 322 (494)
T ss_pred HHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCC------CeEEEeeCHHHhccccchHHH
Confidence 46677777788765433 234678899999999998877655321 256666555888889888766
No 349
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=62.53 E-value=5.9 Score=41.44 Aligned_cols=21 Identities=33% Similarity=0.426 Sum_probs=15.7
Q ss_pred EEEcCCCChHHHHHHHHHHHH
Q 000139 547 ILADEMGLGKTIMTIAMLAHL 567 (2062)
Q Consensus 547 ILADEMGLGKTIQaIALLa~L 567 (2062)
+|--..|.|||..+-.++.++
T Consensus 2 ll~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHT
T ss_pred EEECcCCCCeeHHHHHHHhhc
Confidence 566679999998776666554
No 350
>PRK13342 recombination factor protein RarA; Reviewed
Probab=62.37 E-value=32 Score=44.36 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=16.6
Q ss_pred cEEEEcCCCChHHHHHHHHHH
Q 000139 545 NGILADEMGLGKTIMTIAMLA 565 (2062)
Q Consensus 545 gGILADEMGLGKTIQaIALLa 565 (2062)
+.||.-+.|+|||..+-++..
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~ 58 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAG 58 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 568899999999977766543
No 351
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=62.19 E-value=39 Score=45.65 Aligned_cols=43 Identities=21% Similarity=0.255 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhhcCC---cEEEEcCCCChHHHHHHHHHHHHHHhc
Q 000139 529 QHIGLDWLVTMYEKRL---NGILADEMGLGKTIMTIAMLAHLACEK 571 (2062)
Q Consensus 529 Q~~GL~WLv~l~~~~~---gGILADEMGLGKTIQaIALLa~L~~~~ 571 (2062)
|...+..|.+.+..+. .-|+.-..|.|||..|.++...+.|..
T Consensus 21 Qe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~ 66 (605)
T PRK05896 21 QELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN 66 (605)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 4444555555554432 246899999999999999998888754
No 352
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=61.88 E-value=37 Score=41.04 Aligned_cols=113 Identities=20% Similarity=0.262 Sum_probs=59.4
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcH------HHHHHHHHHHCCCCeEEEEeCChhhHHhhhhc
Q 000139 545 NGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVM------LNWETEFLKWCPAFKILTYFGSAKERKFKRQG 618 (2062)
Q Consensus 545 gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL------~QW~~Efkkw~P~lkVl~y~Gs~kerk~~r~g 618 (2062)
-+.+.-++|.|||+..=++++.+.. . .-++||.|+.++ .-|..++.- -|...+ ...
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~-d---~~~~v~i~~~~~s~~~~~~ai~~~l~~-~p~~~~---------~~~---- 114 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNE-D---QVAVVVIDKPTLSDATLLEAIVADLES-QPKVNV---------NAV---- 114 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCC-C---ceEEEEecCcchhHHHHHHHHHHHhcc-Cccchh---------HHH----
Confidence 3457889999999988755554432 1 233457776443 336665533 110000 000
Q ss_pred cCCCCCceEEEEehhhhhhchhhhhcc-CeeEEEEcCccccCChhhHHHHHHHcc----cCceEEEEeccCCCC
Q 000139 619 WLKPNSFHVCITTYRLIIQDSKVFKRK-KWKYLILDEAHLIKNWKSQRWQTLLNF----NSKRRILLTGTPLQN 687 (2062)
Q Consensus 619 w~k~~~fdVVITSYe~l~~d~~~L~r~-~W~lVILDEAH~IKN~~Sk~~qaL~~L----~a~~RLLLTGTPLQN 687 (2062)
....-..-...+.+. +..++++||||.+....-..-+.+.++ ...-+++|-|-|--+
T Consensus 115 ------------~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~ 176 (269)
T COG3267 115 ------------LEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLR 176 (269)
T ss_pred ------------HHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccc
Confidence 000000111223333 348899999999965544444444444 333568888988433
No 353
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=61.59 E-value=38 Score=34.93 Aligned_cols=65 Identities=14% Similarity=0.198 Sum_probs=46.9
Q ss_pred CCCeEEEEeC------chHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccc
Q 000139 1081 DGHRALIFTQ------MTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGG 1145 (2062)
Q Consensus 1081 ~GhKVLIFSQ------~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG 1145 (2062)
..++|+||+. +-..-..+..+|+.+|+.|..+|=....+.|+.+....+...-..|||=..-.||
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG 80 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEFVGG 80 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEeC
Confidence 3579999975 4566778889999999999999876677778887777665444556654333333
No 354
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=61.42 E-value=24 Score=46.15 Aligned_cols=24 Identities=29% Similarity=0.159 Sum_probs=19.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHH
Q 000139 546 GILADEMGLGKTIMTIAMLAHLAC 569 (2062)
Q Consensus 546 GILADEMGLGKTIQaIALLa~L~~ 569 (2062)
.+|.-..|+|||..+-++...+..
T Consensus 144 l~L~G~~G~GKTHLl~Ai~~~l~~ 167 (445)
T PRK12422 144 IYLFGPEGSGKTHLMQAAVHALRE 167 (445)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 568889999999999888777654
No 355
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=61.36 E-value=49 Score=45.11 Aligned_cols=92 Identities=13% Similarity=0.191 Sum_probs=58.1
Q ss_pred hCCCeEEEEeCchHHHHHHHHHHHH-cCCcEEEecCCCCHHHHHHHHHHHhcC--CCceEEEEeccccccccCc------
Q 000139 1080 SDGHRALIFTQMTKMLDILEEFISL-YGYTYMRLDGSTQPEERQTLMQRFNTN--PKIFLFILSTRSGGVGINL------ 1150 (2062)
Q Consensus 1080 s~GhKVLIFSQ~t~mLDILe~~L~~-~Gi~y~RLDGsTs~eqRq~lmerFN~D--~~IfVfLLSTrAGG~GLNL------ 1150 (2062)
.+|+-.+.||.+..|-. +...|.. ..+. +.+-|..+ .|..++++|..+ ....-+|+.|.+..+||+|
T Consensus 469 ~~G~~lvLfTS~~~~~~-~~~~l~~~l~~~-~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~ 544 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISA-IGQLVELGIPAE-IVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVS 544 (636)
T ss_pred cCCCEEEEechHHHHHH-HHHHHHhhcCCC-EEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCC
Confidence 34555666777665555 4444533 2232 34455443 578899999874 2223457889999999999
Q ss_pred --cc--CCEEEEecCCCChhhHHHHHHhhhcc
Q 000139 1151 --VG--ADTVIFYDSDWNPAMDQQAQDRCHRI 1178 (2062)
Q Consensus 1151 --T~--ADtVIfyD~dWNPa~d~QA~gRahRI 1178 (2062)
.| ...|||.-.|+-|.... .|+-|+
T Consensus 545 p~~G~~Ls~ViI~kLPF~~~dp~---a~~~~~ 573 (636)
T TIGR03117 545 PDKDNLLTDLIITCAPFGLNRSL---SMLKRI 573 (636)
T ss_pred CCCCCcccEEEEEeCCCCcCChH---HHHHHH
Confidence 23 78899988888774332 444444
No 356
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=61.35 E-value=10 Score=43.32 Aligned_cols=58 Identities=19% Similarity=0.343 Sum_probs=36.9
Q ss_pred hhhhhccCeeEEEEcCccccCChh----hHHHHHHHcccCceEEEEeccCCCCChHHHHHHH
Q 000139 639 SKVFKRKKWKYLILDEAHLIKNWK----SQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLM 696 (2062)
Q Consensus 639 ~~~L~r~~W~lVILDEAH~IKN~~----Sk~~qaL~~L~a~~RLLLTGTPLQNsL~ELwSLL 696 (2062)
...+....|++|||||.-..-+.. ......|.+-...--+.|||.=....+.|+..++
T Consensus 90 ~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~V 151 (173)
T TIGR00708 90 KEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADLV 151 (173)
T ss_pred HHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCcee
Confidence 344556789999999987654432 3444555544555689999986555555544433
No 357
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=61.03 E-value=47 Score=38.68 Aligned_cols=143 Identities=14% Similarity=0.155 Sum_probs=72.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEe-cCCcHHHHHHHHHHHCCCCeEEEEeCChhhHHhhhhccCC
Q 000139 543 RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVV-PTSVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLK 621 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVv-PtSLL~QW~~Efkkw~P~lkVl~y~Gs~kerk~~r~gw~k 621 (2062)
..+.++.--.|-|||-.++++...... .| .+++||= =+.-...=+..+-+-+|++.+..+...-. |..
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g-~G--~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~--------~~~ 90 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVG-HG--KKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFT--------WET 90 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHH-CC--CeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCc--------ccC
Confidence 445678889999999999988776544 23 3566652 11111111222223345444443321100 110
Q ss_pred CCCceEEEEeh-hhhhhchhhhhccCeeEEEEcCccccCCh----hhHHHHHHHcccCceEEEEeccCCCCChHHHHHHH
Q 000139 622 PNSFHVCITTY-RLIIQDSKVFKRKKWKYLILDEAHLIKNW----KSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLM 696 (2062)
Q Consensus 622 ~~~fdVVITSY-e~l~~d~~~L~r~~W~lVILDEAH~IKN~----~Sk~~qaL~~L~a~~RLLLTGTPLQNsL~ELwSLL 696 (2062)
.+.-. -+..+ +.+......+....|++|||||.-..-+. .......|.+-...--+.|||-=....|.|+..++
T Consensus 91 ~~~~e-~~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ADlV 169 (191)
T PRK05986 91 QDRER-DIAAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAADLV 169 (191)
T ss_pred CCcHH-HHHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCchh
Confidence 00000 00000 11122234456678999999998766543 23444455544555689999985555555544444
Q ss_pred H
Q 000139 697 H 697 (2062)
Q Consensus 697 ~ 697 (2062)
-
T Consensus 170 T 170 (191)
T PRK05986 170 T 170 (191)
T ss_pred e
Confidence 3
No 358
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=60.97 E-value=38 Score=46.18 Aligned_cols=102 Identities=19% Similarity=0.260 Sum_probs=67.5
Q ss_pred CCccccc--cccchHHHHHHHHHHhhhCCCeEEEEeCchHHHH----HHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHh
Q 000139 1056 PDRRLIQ--FDCGKLQELAILLRKLKSDGHRALIFTQMTKMLD----ILEEFISLYGYTYMRLDGSTQPEERQTLMQRFN 1129 (2062)
Q Consensus 1056 Pd~rLiq--~dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLD----ILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN 1129 (2062)
|..++++ ..|||--+....+......|.+|+|-+....... .+..++...|+++..+.|+++..+|..+++...
T Consensus 256 ~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~ 335 (630)
T TIGR00643 256 PMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIA 335 (630)
T ss_pred CccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHh
Confidence 4445654 4588987654433344456889999998766554 444555566899999999999999999988876
Q ss_pred cCCCceEEEEeccccccccCcccCCEEEE
Q 000139 1130 TNPKIFLFILSTRSGGVGINLVGADTVIF 1158 (2062)
Q Consensus 1130 ~D~~IfVfLLSTrAGG~GLNLT~ADtVIf 1158 (2062)
. +.+.|+|.+....-.++++.....||+
T Consensus 336 ~-g~~~IiVgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 336 S-GQIHLVVGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred C-CCCCEEEecHHHHhccccccccceEEE
Confidence 4 455665544433334455555555544
No 359
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=60.87 E-value=32 Score=39.14 Aligned_cols=25 Identities=32% Similarity=0.648 Sum_probs=21.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHh
Q 000139 546 GILADEMGLGKTIMTIAMLAHLACE 570 (2062)
Q Consensus 546 GILADEMGLGKTIQaIALLa~L~~~ 570 (2062)
-+|.-+.|.|||..+..++..+.+.
T Consensus 17 ~L~~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 17 YLFAGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCC
Confidence 4779999999999999998888764
No 360
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=60.73 E-value=33 Score=44.01 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=19.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHH
Q 000139 546 GILADEMGLGKTIMTIAMLAHLAC 569 (2062)
Q Consensus 546 GILADEMGLGKTIQaIALLa~L~~ 569 (2062)
.+|.-..|+|||..+-++...+..
T Consensus 139 l~l~G~~G~GKThL~~ai~~~l~~ 162 (405)
T TIGR00362 139 LFIYGGVGLGKTHLLHAIGNEILE 162 (405)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH
Confidence 468999999999999887777654
No 361
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=60.27 E-value=34 Score=41.91 Aligned_cols=27 Identities=30% Similarity=0.486 Sum_probs=23.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhcC
Q 000139 546 GILADEMGLGKTIMTIAMLAHLACEKG 572 (2062)
Q Consensus 546 GILADEMGLGKTIQaIALLa~L~~~~g 572 (2062)
-+|.-..|.|||..+.++...+.+..+
T Consensus 27 lL~~Gp~G~Gktt~a~~lA~~l~~~~~ 53 (325)
T COG0470 27 LLFYGPPGVGKTTAALALAKELLCENP 53 (325)
T ss_pred eeeeCCCCCCHHHHHHHHHHHHhCCCc
Confidence 578888999999999999999987643
No 362
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=60.27 E-value=8 Score=53.54 Aligned_cols=112 Identities=20% Similarity=0.256 Sum_probs=75.5
Q ss_pred hhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC-c----HHHHHHHHHHHCCCCeEEEEeCChhhHHh
Q 000139 540 YEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS-V----MLNWETEFLKWCPAFKILTYFGSAKERKF 614 (2062)
Q Consensus 540 ~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtS-L----L~QW~~Efkkw~P~lkVl~y~Gs~kerk~ 614 (2062)
|....+.++.+..|.|||+.+-..+.+.....+. +++.+|+|.. + +..|..-+.. |+++++-..|.....-.
T Consensus 940 y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~-~kvvyIap~kalvker~~Dw~~r~~~--~g~k~ie~tgd~~pd~~ 1016 (1230)
T KOG0952|consen 940 YHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPG-SKVVYIAPDKALVKERSDDWSKRDEL--PGIKVIELTGDVTPDVK 1016 (1230)
T ss_pred eecchhhhhcCCccCcchhHHHHHHHHHhccCCC-ccEEEEcCCchhhcccccchhhhccc--CCceeEeccCccCCChh
Confidence 4445677899999999999887666655554443 7899999973 3 3457665543 58888888776544311
Q ss_pred hhhccCCCCCceEEEEehhhhhhchhhhhcc----CeeEEEEcCccccCC
Q 000139 615 KRQGWLKPNSFHVCITTYRLIIQDSKVFKRK----KWKYLILDEAHLIKN 660 (2062)
Q Consensus 615 ~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~----~W~lVILDEAH~IKN 660 (2062)
. ....+++|||+.........+... ....+|+||.|.++.
T Consensus 1017 ~------v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~ 1060 (1230)
T KOG0952|consen 1017 A------VREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE 1060 (1230)
T ss_pred h------eecCceEEcccccccCccccccchhhhccccceeecccccccC
Confidence 1 124579999998876554332222 246799999998864
No 363
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=60.17 E-value=14 Score=49.83 Aligned_cols=83 Identities=28% Similarity=0.302 Sum_probs=58.7
Q ss_pred HHHHhcCCCceEEEEeccccccccCcccCCEE--------EEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHH
Q 000139 1125 MQRFNTNPKIFLFILSTRSGGVGINLVGADTV--------IFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIE 1196 (2062)
Q Consensus 1125 merFN~D~~IfVfLLSTrAGG~GLNLT~ADtV--------IfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIE 1196 (2062)
-++|-. +.-.|-|+| .+++.||.||.-.+| |-++.||....-+|-.||.||-.|...-...-||++=-=|
T Consensus 850 KqrFM~-GeK~vAIIS-EAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGE 927 (1300)
T KOG1513|consen 850 KQRFMD-GEKLVAIIS-EAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGE 927 (1300)
T ss_pred Hhhhcc-ccceeeeee-hhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccc
Confidence 346664 455566777 688899999976554 5699999999999999999999998765555566654434
Q ss_pred HHHHHHHHHHHHHH
Q 000139 1197 ENILKKANQKRALD 1210 (2062)
Q Consensus 1197 E~Ilkka~qKr~L~ 1210 (2062)
-| +.-...||.-.
T Consensus 928 rR-FAS~VAKRLES 940 (1300)
T KOG1513|consen 928 RR-FASIVAKRLES 940 (1300)
T ss_pred hH-HHHHHHHHHHh
Confidence 34 33445565433
No 364
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=59.98 E-value=16 Score=44.15 Aligned_cols=56 Identities=21% Similarity=0.114 Sum_probs=38.9
Q ss_pred CcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcC-CCCcEEEEecCCcH
Q 000139 525 LREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKG-IWGPHLIVVPTSVM 586 (2062)
Q Consensus 525 LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g-~~Gp~LIVvPtSLL 586 (2062)
|-+=|...+.+ . ..+.++---.|.|||.+.+..++++....+ ....+|+|+++...
T Consensus 1 l~~eQ~~~i~~-~-----~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~a 57 (315)
T PF00580_consen 1 LTDEQRRIIRS-T-----EGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAA 57 (315)
T ss_dssp S-HHHHHHHHS-------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHH
T ss_pred CCHHHHHHHhC-C-----CCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHH
Confidence 34667777765 1 334445455999999999999999887653 44578999998653
No 365
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=59.91 E-value=16 Score=34.45 Aligned_cols=47 Identities=11% Similarity=0.280 Sum_probs=34.5
Q ss_pred CCCCChhhhHHHHHHHHhcCC-Cc---hhHHHHhhccccCccccccccCChhhHHHHHHH
Q 000139 1660 PDVWLPQEDAILCAVVHEYGP-NW---SLVSDILYGMTASGYYRGRYRHPVHCCERFREL 1715 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~-nw---~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~ 1715 (2062)
+-.||++|......-|..||. || .-|++.| .. ...++.||+-....+
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~---~~------~~lT~~qV~SH~QKy 53 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELM---VV------DGLTRDQVASHLQKY 53 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHc---CC------CCCCHHHHHHHHHHH
Confidence 567999999888888999997 99 8888766 11 222778887655443
No 366
>PTZ00293 thymidine kinase; Provisional
Probab=59.48 E-value=20 Score=42.26 Aligned_cols=35 Identities=11% Similarity=0.141 Sum_probs=23.9
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC
Q 000139 547 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS 584 (2062)
Q Consensus 547 ILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtS 584 (2062)
++.-.||.|||..-|-.+..... ...++++|-|..
T Consensus 8 vi~GpMfSGKTteLLr~i~~y~~---ag~kv~~~kp~~ 42 (211)
T PTZ00293 8 VIIGPMFSGKTTELMRLVKRFTY---SEKKCVVIKYSK 42 (211)
T ss_pred EEECCCCChHHHHHHHHHHHHHH---cCCceEEEEecc
Confidence 45778999999776665544332 234788888864
No 367
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=59.35 E-value=42 Score=46.19 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=22.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHh
Q 000139 546 GILADEMGLGKTIMTIAMLAHLACE 570 (2062)
Q Consensus 546 GILADEMGLGKTIQaIALLa~L~~~ 570 (2062)
.|+.-+.|.|||..|-++...+.|.
T Consensus 43 YLF~GP~GtGKTt~AriLAk~LnC~ 67 (725)
T PRK07133 43 YLFSGPRGTGKTSVAKIFANALNCS 67 (725)
T ss_pred EEEECCCCCcHHHHHHHHHHHhccc
Confidence 4789999999999999998888775
No 368
>PRK05580 primosome assembly protein PriA; Validated
Probab=59.17 E-value=55 Score=45.10 Aligned_cols=95 Identities=13% Similarity=0.148 Sum_probs=69.9
Q ss_pred cccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHH-HcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEec
Q 000139 1063 FDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFIS-LYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILST 1141 (2062)
Q Consensus 1063 ~dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~-~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLST 1141 (2062)
..|||......++......|.+|||.+.......-+...|. ..|.....++|+++..+|.....+... +.+.| +++|
T Consensus 171 TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~-g~~~I-VVgT 248 (679)
T PRK05580 171 TGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKR-GEAKV-VIGA 248 (679)
T ss_pred CCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHc-CCCCE-EEec
Confidence 36899999888887777778999999999888776666664 458899999999999888877777654 34555 5667
Q ss_pred cccccccCcccCCEEEEec
Q 000139 1142 RSGGVGINLVGADTVIFYD 1160 (2062)
Q Consensus 1142 rAGG~GLNLT~ADtVIfyD 1160 (2062)
++.- =+.+..-..||+=+
T Consensus 249 rsal-~~p~~~l~liVvDE 266 (679)
T PRK05580 249 RSAL-FLPFKNLGLIIVDE 266 (679)
T ss_pred cHHh-cccccCCCEEEEEC
Confidence 6543 24455566666544
No 369
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=58.90 E-value=47 Score=41.42 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=21.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHh
Q 000139 546 GILADEMGLGKTIMTIAMLAHLACE 570 (2062)
Q Consensus 546 GILADEMGLGKTIQaIALLa~L~~~ 570 (2062)
-||.-+.|.|||..+.++...+.+.
T Consensus 39 ~Ll~G~~G~GKt~~a~~la~~l~~~ 63 (355)
T TIGR02397 39 YLFSGPRGTGKTSIARIFAKALNCQ 63 (355)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4789999999999998888888765
No 370
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=58.64 E-value=81 Score=40.23 Aligned_cols=225 Identities=19% Similarity=0.173 Sum_probs=114.0
Q ss_pred CCCcHHHHHHHHHHHHHhhc--CCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCc---HHHHHHHHHHHC
Q 000139 523 FPLREYQHIGLDWLVTMYEK--RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSV---MLNWETEFLKWC 597 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~--~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSL---L~QW~~Efkkw~ 597 (2062)
...|++|..-+.-|+..-.. ....+|.-..|.|||..+-.++.++- -++..|++.-. -.-|+.=+.+-.
T Consensus 8 v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n------~~~vw~n~~ecft~~~lle~IL~~~~ 81 (438)
T KOG2543|consen 8 VPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN------LENVWLNCVECFTYAILLEKILNKSQ 81 (438)
T ss_pred ccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC------CcceeeehHHhccHHHHHHHHHHHhc
Confidence 45799999999877643222 12337888999999999988887661 25666666522 222444444421
Q ss_pred CCCeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHcc-----
Q 000139 598 PAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNF----- 672 (2062)
Q Consensus 598 P~lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L----- 672 (2062)
..-+.|...+-. +.-+-+-..++.+-...-++-.--++|+|-|..|+...+...+.+.++
T Consensus 82 ----~~d~dg~~~~~~-----------~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~ 146 (438)
T KOG2543|consen 82 ----LADKDGDKVEGD-----------AENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLN 146 (438)
T ss_pred ----cCCCchhhhhhH-----------HHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhC
Confidence 001111111100 000000011111111111112346899999999999888888877776
Q ss_pred cCceEEEEeccCCCCChHHHHHHHHHhCCCC--CC--ChHHHHHHhcCCCCCcccccccccHH-HHHHHHHhhhhhhhh-
Q 000139 673 NSKRRILLTGTPLQNDLMELWSLMHFLMPHI--FQ--SHQEFKDWFCNPISGMVEGQEKVNKE-VVDRLHNVLRPFILR- 746 (2062)
Q Consensus 673 ~a~~RLLLTGTPLQNsL~ELwSLL~FL~P~i--F~--s~~eFkewFsnPisg~~eg~~~~n~~-~i~rLhkvLrpFmLR- 746 (2062)
...-+++++.++..+...-= +..+.|-. |. +-.+-+..+..--.+ ..+.. ..+-||-++++|..-
T Consensus 147 ~~~i~iils~~~~e~~y~~n---~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~------~r~~~~ya~fl~v~l~vF~~~c 217 (438)
T KOG2543|consen 147 EPTIVIILSAPSCEKQYLIN---TGTLEIVVLHFPQYSVEETQVILSRDNPG------KRKLDVYAQFLHVLLQVFYMAC 217 (438)
T ss_pred CCceEEEEeccccHHHhhcc---cCCCCceEEecCCCCHHHHHHHHhcCCcc------ccchHHHHHHHHHHHHHHHHHh
Confidence 23567888888865432110 11111111 11 112222222210000 11111 234467777776521
Q ss_pred h----hhhhHhhcCCCceeEEEEecCCHHH-HHHHH
Q 000139 747 R----LKRDVEKQLPMKQEHVIYCRLSKRQ-RNLYE 777 (2062)
Q Consensus 747 R----tK~DVekqLP~K~EhVV~c~LSkrQ-R~LYd 777 (2062)
| +..-.....|+..|.++.-..++.. +.+|.
T Consensus 218 rd~~eL~~~~~~~wpky~epi~~~~i~~~d~~~L~r 253 (438)
T KOG2543|consen 218 RDVNELRSLISLAWPKYCEPITKGKIDPTDKARLWR 253 (438)
T ss_pred CCHHHHHHHHHHHHHhhccccccCCCChhHHHHHHH
Confidence 1 1111223588888888888888887 44444
No 371
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=58.64 E-value=13 Score=44.69 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=18.0
Q ss_pred HHHHHHHHhhcCCcEEEEcCCCChHHHHHHH
Q 000139 532 GLDWLVTMYEKRLNGILADEMGLGKTIMTIA 562 (2062)
Q Consensus 532 GL~WLv~l~~~~~gGILADEMGLGKTIQaIA 562 (2062)
++++|...-. +..++|.-+.|.|||..+-.
T Consensus 6 ~id~~~~i~~-Gqr~~I~G~~G~GKTTLlr~ 35 (249)
T cd01128 6 VVDLFAPIGK-GQRGLIVAPPKAGKTTLLQS 35 (249)
T ss_pred heeeecccCC-CCEEEEECCCCCCHHHHHHH
Confidence 4555555433 44455555699999964433
No 372
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=58.18 E-value=50 Score=43.11 Aligned_cols=34 Identities=24% Similarity=0.197 Sum_probs=23.4
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEe
Q 000139 545 NGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVV 581 (2062)
Q Consensus 545 gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVv 581 (2062)
..+++-..|.|||.++..+..++.. .| + ++++|+
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~~-~g-~-kV~lV~ 130 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFKK-KG-L-KVGLVA 130 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH-cC-C-eEEEec
Confidence 3567889999999988877776653 33 2 444444
No 373
>PRK09183 transposase/IS protein; Provisional
Probab=57.96 E-value=42 Score=40.69 Aligned_cols=36 Identities=28% Similarity=0.272 Sum_probs=25.0
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEE
Q 000139 542 KRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIV 580 (2062)
Q Consensus 542 ~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIV 580 (2062)
.+.+.+|.-..|.|||..+.++... ++..| ..++++
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~-a~~~G--~~v~~~ 136 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYE-AVRAG--IKVRFT 136 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH-HHHcC--CeEEEE
Confidence 4677888889999999999888544 34333 244444
No 374
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=57.76 E-value=60 Score=43.18 Aligned_cols=95 Identities=14% Similarity=0.190 Sum_probs=69.2
Q ss_pred cccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHH-HcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEec
Q 000139 1063 FDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFIS-LYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILST 1141 (2062)
Q Consensus 1063 ~dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~-~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLST 1141 (2062)
..|||-.+...++......|.+|||.+.......-+...|. ..|.....++|.++..+|.....+-.. +...| ++.|
T Consensus 6 TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~-g~~~I-VVGT 83 (505)
T TIGR00595 6 TGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKN-GEILV-VIGT 83 (505)
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHc-CCCCE-EECC
Confidence 46899999988888888889999999999887766666664 457888999999999888887766553 34455 5666
Q ss_pred cccccccCcccCCEEEEec
Q 000139 1142 RSGGVGINLVGADTVIFYD 1160 (2062)
Q Consensus 1142 rAGG~GLNLT~ADtVIfyD 1160 (2062)
++.- =+-+.....||+=+
T Consensus 84 rsal-f~p~~~l~lIIVDE 101 (505)
T TIGR00595 84 RSAL-FLPFKNLGLIIVDE 101 (505)
T ss_pred hHHH-cCcccCCCEEEEEC
Confidence 6532 23445555566544
No 375
>PRK08760 replicative DNA helicase; Provisional
Probab=57.72 E-value=46 Score=43.90 Aligned_cols=63 Identities=13% Similarity=0.054 Sum_probs=44.4
Q ss_pred HHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHH
Q 000139 532 GLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKW 596 (2062)
Q Consensus 532 GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw 596 (2062)
.|+-|..-+..+.=.|||--+|.|||..++.++...+...+ .|++++..---..+|...+...
T Consensus 218 ~LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~~g--~~V~~fSlEMs~~ql~~Rl~a~ 280 (476)
T PRK08760 218 DFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIKSK--KGVAVFSMEMSASQLAMRLISS 280 (476)
T ss_pred HHHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHhcC--CceEEEeccCCHHHHHHHHHHh
Confidence 34444443444445589999999999999998887764333 3788998877777887766543
No 376
>PF13397 DUF4109: Domain of unknown function (DUF4109)
Probab=57.66 E-value=6.9 Score=40.96 Aligned_cols=10 Identities=60% Similarity=1.168 Sum_probs=8.9
Q ss_pred CCCchHHHHH
Q 000139 31 PKTHWDHVLE 40 (2062)
Q Consensus 31 ~k~hwd~lle 40 (2062)
+|||||||+|
T Consensus 77 ~rTHwdml~E 86 (105)
T PF13397_consen 77 YRTHWDMLLE 86 (105)
T ss_pred CccHHHHHHH
Confidence 7999999985
No 377
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=57.53 E-value=1e+02 Score=40.42 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=20.1
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHH
Q 000139 545 NGILADEMGLGKTIMTIAMLAHLAC 569 (2062)
Q Consensus 545 gGILADEMGLGKTIQaIALLa~L~~ 569 (2062)
+.+|.-..|+|||..+-++...+..
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~ 156 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQ 156 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHH
Confidence 3578999999999998877776654
No 378
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=57.51 E-value=60 Score=41.59 Aligned_cols=123 Identities=13% Similarity=0.076 Sum_probs=61.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCC--CeEEEEeCChhhHHhhhhccC
Q 000139 543 RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPA--FKILTYFGSAKERKFKRQGWL 620 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw~P~--lkVl~y~Gs~kerk~~r~gw~ 620 (2062)
+...+|.-..|.|||.++..+...+....|. .++.+|+-...-..=...++.|+.. +.+....
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~-~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~-------------- 201 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGA-SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVK-------------- 201 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-CeEEEEecccccccHHHHHHHHHHHcCCceEecC--------------
Confidence 3445688899999998887777665433332 2455554333211122333333311 1111111
Q ss_pred CCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHcc-----cCceEEEEeccCCCCChHHHH
Q 000139 621 KPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNF-----NSKRRILLTGTPLQNDLMELW 693 (2062)
Q Consensus 621 k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L-----~a~~RLLLTGTPLQNsL~ELw 693 (2062)
+-..+......+ .+.++|+||.+=+..... .....+..+ .....|+|++|-=...+.+.+
T Consensus 202 ----------~~~~l~~~l~~l--~~~DlVLIDTaG~~~~d~-~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 202 ----------DGGDLQLALAEL--RNKHMVLIDTIGMSQRDR-TVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred ----------CcccHHHHHHHh--cCCCEEEEcCCCCCcccH-HHHHHHHHHhccCCCCeEEEEecCccChHHHHHHH
Confidence 111111111112 245899999996553222 222222222 234578889997666666553
No 379
>PRK04195 replication factor C large subunit; Provisional
Probab=56.84 E-value=51 Score=43.50 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=19.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHH
Q 000139 543 RLNGILADEMGLGKTIMTIAMLAHL 567 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIALLa~L 567 (2062)
....+|.-..|.|||..+-+++..+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4567899999999998776665443
No 380
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=56.03 E-value=18 Score=35.45 Aligned_cols=54 Identities=15% Similarity=0.258 Sum_probs=44.2
Q ss_pred CCCCChhhhHHHHHHHHhc-----C------------CCchhHHHHhhccccCccccccccCChhhHHHHHHHHHHH
Q 000139 1660 PDVWLPQEDAILCAVVHEY-----G------------PNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRY 1719 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~-----g------------~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~ 1719 (2062)
...||+.|-.+|+.+|.+| | .-|.-|+..||++.. ..|++.+|+.+|..+....
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~------~~Rs~~~lkkkW~nlk~~~ 72 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGP------GKRSWKQLKKKWKNLKSKA 72 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCC------CCCCHHHHHHHHHHHHHHH
Confidence 3579999999999999997 3 139999999977433 2699999999999987653
No 381
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=55.94 E-value=14 Score=47.08 Aligned_cols=46 Identities=24% Similarity=0.569 Sum_probs=39.5
Q ss_pred CCCCChhhhHHHHHHHHhcCC-CchhHHHHhhccccCccccccccCChhhHHHHHHHH
Q 000139 1660 PDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELI 1716 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~ 1716 (2062)
..+|+..|+=.|..-+|.||= ||.-|||-| | -|....|++=|....
T Consensus 72 ~~~WtadEEilLLea~~t~G~GNW~dIA~hI----------G-tKtkeeck~hy~k~f 118 (438)
T KOG0457|consen 72 DPSWTADEEILLLEAAETYGFGNWQDIADHI----------G-TKTKEECKEHYLKHF 118 (438)
T ss_pred CCCCChHHHHHHHHHHHHhCCCcHHHHHHHH----------c-ccchHHHHHHHHHHH
Confidence 478999999999999999995 999999977 2 488999999886543
No 382
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=55.29 E-value=50 Score=45.93 Aligned_cols=40 Identities=28% Similarity=0.382 Sum_probs=26.7
Q ss_pred cHHHHHHHHHHHHHh--hcCCcEEEEcCCCChHHHHHHHHHHHHH
Q 000139 526 REYQHIGLDWLVTMY--EKRLNGILADEMGLGKTIMTIAMLAHLA 568 (2062)
Q Consensus 526 RpYQ~~GL~WLv~l~--~~~~gGILADEMGLGKTIQaIALLa~L~ 568 (2062)
|++++.- ++... ....|.||.-+.|.|||..+-++...+.
T Consensus 187 r~~ei~~---~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~ 228 (731)
T TIGR02639 187 REDELER---TIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIA 228 (731)
T ss_pred cHHHHHH---HHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 5555543 33332 2345789999999999998877666553
No 383
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=55.29 E-value=57 Score=40.95 Aligned_cols=48 Identities=23% Similarity=0.398 Sum_probs=36.0
Q ss_pred CcHHHHHHHHHHHHHhhcCCcE-EEEcCCCChHHHHHHHHHHHHHHhcC
Q 000139 525 LREYQHIGLDWLVTMYEKRLNG-ILADEMGLGKTIMTIAMLAHLACEKG 572 (2062)
Q Consensus 525 LRpYQ~~GL~WLv~l~~~~~gG-ILADEMGLGKTIQaIALLa~L~~~~g 572 (2062)
++|+|...-.-|...+.+-..+ ++.-..|+|||..+..+...+.|..+
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~ 50 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCETP 50 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCC
Confidence 4677777776676665433344 57899999999999999999988643
No 384
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=55.21 E-value=17 Score=48.35 Aligned_cols=50 Identities=12% Similarity=0.184 Sum_probs=34.6
Q ss_pred CCcEEEecCCCCHHHHHHHHHHHh-cCCCceEEEEeccccccccCcccCCEEEE
Q 000139 1106 GYTYMRLDGSTQPEERQTLMQRFN-TNPKIFLFILSTRSGGVGINLVGADTVIF 1158 (2062)
Q Consensus 1106 Gi~y~RLDGsTs~eqRq~lmerFN-~D~~IfVfLLSTrAGG~GLNLT~ADtVIf 1158 (2062)
++.++-|+...+.+-..++ |+ ..+.++-.|++|..+-..|.+.+.-.||=
T Consensus 597 ~L~vlpiYSQLp~dlQ~ki---Fq~a~~~vRK~IvATNIAETSLTi~gI~yVID 647 (1042)
T KOG0924|consen 597 DLAVLPIYSQLPADLQAKI---FQKAEGGVRKCIVATNIAETSLTIPGIRYVID 647 (1042)
T ss_pred ceEEEeehhhCchhhhhhh---cccCCCCceeEEEeccchhhceeecceEEEEe
Confidence 4556666666665544333 55 24566667899999999999998888773
No 385
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=54.88 E-value=41 Score=39.43 Aligned_cols=52 Identities=15% Similarity=0.061 Sum_probs=37.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHH
Q 000139 543 RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKW 596 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw 596 (2062)
+...+|+-+.|.|||+.++.++...+...|. ++|+|.-..-..++.+.++.+
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge--~vlyvs~ee~~~~l~~~~~s~ 70 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGE--KVLYVSFEEPPEELIENMKSF 70 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT----EEEEESSS-HHHHHHHHHTT
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCC--cEEEEEecCCHHHHHHHHHHc
Confidence 3345788899999999999998876554233 788888766667777777665
No 386
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=54.23 E-value=9.1 Score=47.68 Aligned_cols=43 Identities=28% Similarity=0.256 Sum_probs=29.8
Q ss_pred CeeEEEEcCccccCChhhHHHHHHHcccCceEEEEeccCCCCChH
Q 000139 646 KWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLM 690 (2062)
Q Consensus 646 ~W~lVILDEAH~IKN~~Sk~~qaL~~L~a~~RLLLTGTPLQNsL~ 690 (2062)
+-.+||+||||+ ..-.+.-..|-+|--..++.+||.+.|-+|-
T Consensus 243 ~dAfVIlDEaQN--tT~~QmKMfLTRiGf~skmvItGD~tQiDLp 285 (348)
T COG1702 243 NDAFVILDEAQN--TTVGQMKMFLTRIGFESKMVITGDITQIDLP 285 (348)
T ss_pred CCeEEEEecccc--cchhhhceeeeeecCCceEEEEcCcccccCC
Confidence 457899999997 2222333345566777889999999886543
No 387
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=53.90 E-value=8.7 Score=51.74 Aligned_cols=66 Identities=32% Similarity=0.532 Sum_probs=48.9
Q ss_pred HHHHhc-CCCceEEEEeccccccccCcccCCEEE--------EecC---------CC-ChhhHHHHHHhhhccCCcCcEE
Q 000139 1125 MQRFNT-NPKIFLFILSTRSGGVGINLVGADTVI--------FYDS---------DW-NPAMDQQAQDRCHRIGQTREVH 1185 (2062)
Q Consensus 1125 merFN~-D~~IfVfLLSTrAGG~GLNLT~ADtVI--------fyD~---------dW-NPa~d~QA~gRahRIGQTRdV~ 1185 (2062)
|.-|.. ..+.+..+++|.++-..|++.+.-+|| .||. +| .-+.-.||-||++|+| +-|
T Consensus 620 ~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg---pGH 696 (1172)
T KOG0926|consen 620 MRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG---PGH 696 (1172)
T ss_pred hhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC---CCc
Confidence 445654 345677789999999999999988887 4554 23 3455568888888877 789
Q ss_pred EEEEEeCC
Q 000139 1186 IYRLISES 1193 (2062)
Q Consensus 1186 VYRLIse~ 1193 (2062)
.|||.+.-
T Consensus 697 cYRLYSSA 704 (1172)
T KOG0926|consen 697 CYRLYSSA 704 (1172)
T ss_pred eeehhhhH
Confidence 99998753
No 388
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=53.64 E-value=17 Score=43.76 Aligned_cols=37 Identities=30% Similarity=0.435 Sum_probs=24.5
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEE--ecCCcH
Q 000139 547 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIV--VPTSVM 586 (2062)
Q Consensus 547 ILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIV--vPtSLL 586 (2062)
|..--=|.|||-.|.+|...|.. .| .++|+| +|.+++
T Consensus 6 i~s~kGGvG~TTltAnLA~aL~~-~G--~~VlaID~dpqN~L 44 (243)
T PF06564_consen 6 IVSPKGGVGKTTLTANLAWALAR-LG--ESVLAIDLDPQNLL 44 (243)
T ss_pred EecCCCCCCHHHHHHHHHHHHHH-CC--CcEEEEeCCcHHHH
Confidence 33344589999999888887765 33 266666 465544
No 389
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=53.47 E-value=68 Score=40.64 Aligned_cols=47 Identities=21% Similarity=0.336 Sum_probs=35.4
Q ss_pred CcHHHHHHHHHHHHHhhcCCcE-EEEcCCCChHHHHHHHHHHHHHHhc
Q 000139 525 LREYQHIGLDWLVTMYEKRLNG-ILADEMGLGKTIMTIAMLAHLACEK 571 (2062)
Q Consensus 525 LRpYQ~~GL~WLv~l~~~~~gG-ILADEMGLGKTIQaIALLa~L~~~~ 571 (2062)
++|+|...-+-|..+..+-..+ ++.-..|+|||..+..|...+.|..
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~ 49 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLCET 49 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 5777777777777653222234 5788999999999999999999864
No 390
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=53.16 E-value=84 Score=41.27 Aligned_cols=42 Identities=19% Similarity=0.218 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhhcCC--c-EEEEcCCCChHHHHHHHHHHHHHHh
Q 000139 529 QHIGLDWLVTMYEKRL--N-GILADEMGLGKTIMTIAMLAHLACE 570 (2062)
Q Consensus 529 Q~~GL~WLv~l~~~~~--g-GILADEMGLGKTIQaIALLa~L~~~ 570 (2062)
|...+.+|.+.+..+. . -|+.-+.|.|||..+.++...+.|.
T Consensus 22 q~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 22 QDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred cHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 5566777777665543 3 4688999999999999999888774
No 391
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=53.04 E-value=50 Score=41.83 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=19.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHH
Q 000139 543 RLNGILADEMGLGKTIMTIAMLAHL 567 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIALLa~L 567 (2062)
..|.+|.-+.|.|||..+-++...+
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhC
Confidence 4567899999999998887765543
No 392
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=52.93 E-value=6.1 Score=55.54 Aligned_cols=139 Identities=27% Similarity=0.359 Sum_probs=123.3
Q ss_pred ccchHHHHHHHHHHhhhCC--CeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEec
Q 000139 1064 DCGKLQELAILLRKLKSDG--HRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILST 1141 (2062)
Q Consensus 1064 dSGKLq~L~~LLrkLks~G--hKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLST 1141 (2062)
-+.|+..+..++..++... .+||+|+||...||+++..+..+++.+.+-.| |. .-+..+..|.. |.||++-+
T Consensus 1201 fg~kI~~v~~~il~iK~k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~-t~--d~~dc~~~fk~---I~clll~~ 1274 (1394)
T KOG0298|consen 1201 FGTKIDSVVIAILYIKFKNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE-TE--DFDDCIICFKS---IDCLLLFV 1274 (1394)
T ss_pred hccCchhHHHHHHHHhccCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccC-Cc--chhhhhhhccc---ceEEEEEe
Confidence 3678888888887776554 69999999999999999999999999766555 43 45677888854 99999999
Q ss_pred cccccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHH
Q 000139 1142 RSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRA 1208 (2062)
Q Consensus 1142 rAGG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~qKr~ 1208 (2062)
+.||-|+||..|-|||+.+|-.||+.++||+||+|||||+++|.|||+|..+||||+||.....|..
T Consensus 1275 ~~~~~GLNL~eA~Hvfl~ePiLN~~~E~QAigRvhRiGQ~~pT~V~~fiv~~TvEe~Il~l~~~~ee 1341 (1394)
T KOG0298|consen 1275 SKGSKGLNLIEATHVFLVEPILNPGDEAQAIGRVHRIGQKRPTFVHRFIVNETVEENILSLITSKEE 1341 (1394)
T ss_pred ccCcccccHHhhhhhheeccccCchHHHhhhhhhhhcccccchhhhhhhhccchHHHHHHHhhhhHH
Confidence 9999999999999999999999999999999999999999999999999999999999988766654
No 393
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=52.76 E-value=1.1e+02 Score=34.36 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=34.9
Q ss_pred cCeeEEEEcCccccCChhhHHHHHHHcccCceEEEEeccCCCCChHHHHHHHHHhC
Q 000139 645 KKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLM 700 (2062)
Q Consensus 645 ~~W~lVILDEAH~IKN~~Sk~~qaL~~L~a~~RLLLTGTPLQNsL~ELwSLL~FL~ 700 (2062)
..+++||+|=...+.+ .. ..+..+..-..+++..+|-..++.++..++.++.
T Consensus 66 ~~yD~VIiD~pp~~~~---~~-~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~ 117 (169)
T cd02037 66 GELDYLVIDMPPGTGD---EH-LTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFK 117 (169)
T ss_pred CCCCEEEEeCCCCCcH---HH-HHHHhccCCCeEEEEECCchhhHHHHHHHHHHHH
Confidence 5789999998876532 11 1222223345566666888889999999888884
No 394
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=52.55 E-value=72 Score=46.08 Aligned_cols=129 Identities=16% Similarity=0.147 Sum_probs=72.9
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCeE
Q 000139 523 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKI 602 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw~P~lkV 602 (2062)
..|-+-|..++..+. ....-++|---.|.|||.+.-+++..+ ...| ..++.++|+...-+ .|..-+ ++..
T Consensus 380 ~~Ls~eQ~~Av~~i~---~~~r~~~v~G~AGTGKTt~l~~~~~~~-e~~G--~~V~g~ApTgkAA~---~L~e~~-Gi~a 449 (1102)
T PRK13826 380 ARLSDEQKTAIEHVA---GPARIAAVVGRAGAGKTTMMKAAREAW-EAAG--YRVVGGALAGKAAE---GLEKEA-GIQS 449 (1102)
T ss_pred CCCCHHHHHHHHHHh---ccCCeEEEEeCCCCCHHHHHHHHHHHH-HHcC--CeEEEEcCcHHHHH---HHHHhh-CCCe
Confidence 579999999998764 223345677779999998776655444 3333 36777888865432 222211 1111
Q ss_pred EEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHcc-cCceEEEEe
Q 000139 603 LTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNF-NSKRRILLT 681 (2062)
Q Consensus 603 l~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L-~a~~RLLLT 681 (2062)
.+++. +. ..|.. ....+ ..-++||||||..+... .....+... .+..+++|.
T Consensus 450 ~TIas------~l-l~~~~----------------~~~~l--~~~~vlVIDEAsMv~~~--~m~~Ll~~~~~~garvVLV 502 (1102)
T PRK13826 450 RTLSS------WE-LRWNQ----------------GRDQL--DNKTVFVLDEAGMVASR--QMALFVEAVTRAGAKLVLV 502 (1102)
T ss_pred eeHHH------HH-hhhcc----------------CccCC--CCCcEEEEECcccCCHH--HHHHHHHHHHhcCCEEEEE
Confidence 11110 00 00100 00011 12469999999999532 233334444 367899999
Q ss_pred ccCCCCC
Q 000139 682 GTPLQND 688 (2062)
Q Consensus 682 GTPLQNs 688 (2062)
|=|-|-.
T Consensus 503 GD~~QL~ 509 (1102)
T PRK13826 503 GDPEQLQ 509 (1102)
T ss_pred CCHHHcC
Confidence 9987754
No 395
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=52.38 E-value=43 Score=37.72 Aligned_cols=81 Identities=12% Similarity=0.057 Sum_probs=56.7
Q ss_pred ccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHH-c---CCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEE
Q 000139 1064 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISL-Y---GYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFIL 1139 (2062)
Q Consensus 1064 dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~-~---Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLL 1139 (2062)
..+++..+.+|+.+....|+||+|++.-..++..|-..|=. . -+.+.+..+.. ....-|+ |
T Consensus 11 ~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~LWtf~~~SFlPH~~~~~~~--------------~a~~PV~-L 75 (154)
T PRK06646 11 DELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNLWTYSRKQFIPHGSKLDPQ--------------PEKQPIY-I 75 (154)
T ss_pred CChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhcCCCCCCCCCCCCCCCCC--------------CCCCCEE-E
Confidence 47899999999999999999999999999999999999932 2 23333322221 1122343 4
Q ss_pred eccccccccCcccCCEEEEecCCC
Q 000139 1140 STRSGGVGINLVGADTVIFYDSDW 1163 (2062)
Q Consensus 1140 STrAGG~GLNLT~ADtVIfyD~dW 1163 (2062)
+ .++.+.| .++.+|++++-+
T Consensus 76 ~--~~~~~p~--~~~vLiNL~~~~ 95 (154)
T PRK06646 76 T--DELQNPN--NASVLVIISPTD 95 (154)
T ss_pred e--cCCCCCC--CCCEEEECCCcc
Confidence 4 2334555 888999998854
No 396
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=52.35 E-value=40 Score=38.14 Aligned_cols=55 Identities=18% Similarity=0.123 Sum_probs=37.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhcC-------CCCcEEEEecCCcHHHHHHHHHHHC
Q 000139 543 RLNGILADEMGLGKTIMTIAMLAHLACEKG-------IWGPHLIVVPTSVMLNWETEFLKWC 597 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIALLa~L~~~~g-------~~Gp~LIVvPtSLL~QW~~Efkkw~ 597 (2062)
+.-++++-..|.|||..++.++.++..... ..+++|+|..-.-..++..-+....
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~ 93 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALL 93 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHh
Confidence 444688889999999999999998875322 3457888887766667777776654
No 397
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=52.22 E-value=10 Score=48.24 Aligned_cols=45 Identities=27% Similarity=0.521 Sum_probs=40.8
Q ss_pred CCCCChhhhHHHHHHHHhcCCCchhHHHHhhccccCccccccccCChhhHHHHHHH
Q 000139 1660 PDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFREL 1715 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~ 1715 (2062)
...||.+|-.+|..=|..||-.|.-|++-+ | .+++.+|-.+|-.|
T Consensus 279 dk~WS~qE~~LLLEGIe~ygDdW~kVA~HV----------g-tKt~EqCIl~FL~L 323 (531)
T COG5259 279 DKNWSRQELLLLLEGIEMYGDDWDKVARHV----------G-TKTKEQCILHFLQL 323 (531)
T ss_pred cccccHHHHHHHHHHHHHhhhhHHHHHHHh----------C-CCCHHHHHHHHHcC
Confidence 358999999999999999999999999966 2 59999999999876
No 398
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=52.13 E-value=21 Score=44.88 Aligned_cols=50 Identities=22% Similarity=0.265 Sum_probs=31.6
Q ss_pred hhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHH
Q 000139 540 YEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLK 595 (2062)
Q Consensus 540 ~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkk 595 (2062)
+....|.+|....|.|||+.|-|+.... | .+++=|-=..+...|--|-.+
T Consensus 124 l~p~kGiLL~GPpG~GKTmlAKA~Akea----g--a~fInv~~s~lt~KWfgE~eK 173 (386)
T KOG0737|consen 124 LRPPKGILLYGPPGTGKTMLAKAIAKEA----G--ANFINVSVSNLTSKWFGEAQK 173 (386)
T ss_pred ccCCccceecCCCCchHHHHHHHHHHHc----C--CCcceeeccccchhhHHHHHH
Confidence 3356677899999999999887664432 1 233434444566667655444
No 399
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=52.12 E-value=1e+02 Score=38.50 Aligned_cols=43 Identities=14% Similarity=0.346 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhcCC---cEEEEcCCCChHHHHHHHHHHHHHHhc
Q 000139 529 QHIGLDWLVTMYEKRL---NGILADEMGLGKTIMTIAMLAHLACEK 571 (2062)
Q Consensus 529 Q~~GL~WLv~l~~~~~---gGILADEMGLGKTIQaIALLa~L~~~~ 571 (2062)
|...+..|.+....+. .-++.-+.|.||+..+.++...+.|..
T Consensus 9 q~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~ 54 (314)
T PRK07399 9 QPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQG 54 (314)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 5556666666665553 457899999999999999999998853
No 400
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=51.25 E-value=65 Score=38.44 Aligned_cols=115 Identities=17% Similarity=0.224 Sum_probs=61.1
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCCcEEEEe--cCCcHHHHHHHHHHHCCCCeEEEEeCChhhHHhhhhccCCCCCceEE
Q 000139 551 EMGLGKTIMTIAMLAHLACEKGIWGPHLIVV--PTSVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNSFHVC 628 (2062)
Q Consensus 551 EMGLGKTIQaIALLa~L~~~~g~~Gp~LIVv--PtSLL~QW~~Efkkw~P~lkVl~y~Gs~kerk~~r~gw~k~~~fdVV 628 (2062)
-=|.|||..++.+...+.. .| .+++||= |...+..|...... . ..|. ..+++.
T Consensus 10 KGGvGKTT~a~nLA~~la~-~G--~~VlliD~DpQ~s~~~w~~~~~~---~-----------------~~~~--~~~~~~ 64 (231)
T PRK13849 10 KGGAGKTTALMGLCAALAS-DG--KRVALFEADENRPLTRWKENALR---S-----------------NTWD--PACEVY 64 (231)
T ss_pred CCCccHHHHHHHHHHHHHh-CC--CcEEEEeCCCCCCHHHHHHhhcc---c-----------------cCCC--ccceec
Confidence 3489999999988888765 33 2666662 66777888642211 0 0010 001111
Q ss_pred E-EehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHcccCceEEEEeccCCCCChHHHHHHHHHh
Q 000139 629 I-TTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFL 699 (2062)
Q Consensus 629 I-TSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L~a~~RLLLTGTPLQNsL~ELwSLL~FL 699 (2062)
. .....+......+....++|||||=.-.. +.....+.. .+...+ +|++-+..++++.+.++
T Consensus 65 ~~~~~~~l~~~l~~~~~~~yD~iiID~pp~~----~~~~~~al~-~aD~vl----iP~~ps~~d~~~~~~~~ 127 (231)
T PRK13849 65 AADELPLLEAAYEDAELQGFDYALADTHGGS----SELNNTIIA-SSNLLL----IPTMLTPLDIDEALSTY 127 (231)
T ss_pred CCCHHHHHHHHHHHHhhCCCCEEEEeCCCCc----cHHHHHHHH-HCCEEE----EeccCcHHHHHHHHHHH
Confidence 0 01112222222233346899999955433 222222111 344444 58888888888887776
No 401
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=50.58 E-value=89 Score=41.08 Aligned_cols=102 Identities=11% Similarity=0.051 Sum_probs=59.0
Q ss_pred HHHHHHHH-HhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCeEEEEeCCh
Q 000139 531 IGLDWLVT-MYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSA 609 (2062)
Q Consensus 531 ~GL~WLv~-l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw~P~lkVl~y~Gs~ 609 (2062)
.+++.++. -+..+.-.+|+-++|.|||..++.++..+... + +++|.|..--...|......++.-...
T Consensus 81 ~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~-g--~kvlYvs~EEs~~qi~~ra~rlg~~~~-------- 149 (454)
T TIGR00416 81 GELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKN-Q--MKVLYVSGEESLQQIKMRAIRLGLPEP-------- 149 (454)
T ss_pred HHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhc-C--CcEEEEECcCCHHHHHHHHHHcCCChH--------
Confidence 45565543 12223334789999999999999887776542 2 578888876666666554444321000
Q ss_pred hhHHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccC
Q 000139 610 KERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIK 659 (2062)
Q Consensus 610 kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IK 659 (2062)
. +.+.....+..-...+...+.++||||-.+.+.
T Consensus 150 --------------~--l~~~~e~~~~~I~~~i~~~~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 150 --------------N--LYVLSETNWEQICANIEEENPQACVIDSIQTLY 183 (454)
T ss_pred --------------H--eEEcCCCCHHHHHHHHHhcCCcEEEEecchhhc
Confidence 0 111111111122233455678999999998764
No 402
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=50.54 E-value=35 Score=40.24 Aligned_cols=48 Identities=25% Similarity=0.279 Sum_probs=33.6
Q ss_pred HHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEec
Q 000139 533 LDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVP 582 (2062)
Q Consensus 533 L~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvP 582 (2062)
|+-+..-+..+.-.+|+-..|.|||..++.++.......+ .++|++..
T Consensus 3 LD~~~~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g--~~vly~s~ 50 (242)
T cd00984 3 LDNLTGGLQPGDLIIIAARPSMGKTAFALNIAENIAKKQG--KPVLFFSL 50 (242)
T ss_pred hhhhhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCC--CceEEEeC
Confidence 3333333344445688999999999999999888776433 37888873
No 403
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=50.51 E-value=57 Score=33.01 Aligned_cols=57 Identities=16% Similarity=0.170 Sum_probs=40.4
Q ss_pred CCeEEEEeC------chHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEE
Q 000139 1082 GHRALIFTQ------MTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFI 1138 (2062)
Q Consensus 1082 GhKVLIFSQ------~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfL 1138 (2062)
+++|+||+. +-..-..+..+|+.+|+.|..++=....+-|+.+.+.-....-..||+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi 69 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV 69 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 579999987 566778888999999999999986666555665555433333344554
No 404
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=50.02 E-value=93 Score=42.28 Aligned_cols=23 Identities=30% Similarity=0.222 Sum_probs=18.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHHH
Q 000139 546 GILADEMGLGKTIMTIAMLAHLA 568 (2062)
Q Consensus 546 GILADEMGLGKTIQaIALLa~L~ 568 (2062)
.+|.-..|+|||..+.|+..++.
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~ 339 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYAR 339 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 57889999999998888776654
No 405
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=49.99 E-value=68 Score=44.49 Aligned_cols=21 Identities=29% Similarity=0.331 Sum_probs=16.8
Q ss_pred cEEEEcCCCChHHHHHHHHHH
Q 000139 545 NGILADEMGLGKTIMTIAMLA 565 (2062)
Q Consensus 545 gGILADEMGLGKTIQaIALLa 565 (2062)
+.||.-+.|.|||..+-++..
T Consensus 54 slLL~GPpGtGKTTLA~aIA~ 74 (725)
T PRK13341 54 SLILYGPPGVGKTTLARIIAN 74 (725)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 678999999999977765543
No 406
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=49.88 E-value=62 Score=41.83 Aligned_cols=41 Identities=17% Similarity=0.416 Sum_probs=26.6
Q ss_pred CeeEEEEcCccccCChhh---HHHHHHHcc-cCceEEEEec--cCCC
Q 000139 646 KWKYLILDEAHLIKNWKS---QRWQTLLNF-NSKRRILLTG--TPLQ 686 (2062)
Q Consensus 646 ~W~lVILDEAH~IKN~~S---k~~qaL~~L-~a~~RLLLTG--TPLQ 686 (2062)
..++|+||-.|.+.+... .....+..+ .....++||+ +|-+
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~ 221 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKE 221 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchh
Confidence 468999999999987532 233333333 2334899999 6644
No 407
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=49.87 E-value=40 Score=50.06 Aligned_cols=140 Identities=15% Similarity=0.056 Sum_probs=74.4
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHh-cCCCCcEEEEecCCcHHHHHHHHHHHC
Q 000139 519 FLLKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACE-KGIWGPHLIVVPTSVMLNWETEFLKWC 597 (2062)
Q Consensus 519 ~lLk~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~-~g~~Gp~LIVvPtSLL~QW~~Efkkw~ 597 (2062)
..+...|-+-|+.++.-++.- ...-.+|---.|.|||.+.-+++..+... ......++.++|+.-...=..+.
T Consensus 830 ~~~~~~Lt~~Qr~Av~~iLts--~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L~e~---- 903 (1623)
T PRK14712 830 GELMEKLTSGQRAATRMILET--SDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMRSA---- 903 (1623)
T ss_pred hhhhcccCHHHHHHHHHHHhC--CCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHHHHh----
Confidence 344457999999999877642 23446777779999998865555543221 11122466788986543322221
Q ss_pred CCCeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHccc-Cce
Q 000139 598 PAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFN-SKR 676 (2062)
Q Consensus 598 P~lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L~-a~~ 676 (2062)
++...+. .. |+.... .... ........-++||||||-++-+.. ....+..+. ...
T Consensus 904 -Gi~A~TI------as-----fL~~~~---------~~~~-~~~~~~~~~~llIVDEASMV~~~~--m~~ll~~~~~~ga 959 (1623)
T PRK14712 904 -GVDAQTL------AS-----FLHDTQ---------LQQR-SGETPDFSNTLFLLDESSMVGNTD--MARAYALIAAGGG 959 (1623)
T ss_pred -CchHhhH------HH-----Hhcccc---------chhh-cccCCCCCCcEEEEEccccccHHH--HHHHHHhhhhCCC
Confidence 1111000 00 000000 0000 000001235899999999997533 233333333 357
Q ss_pred EEEEeccCCCCC
Q 000139 677 RILLTGTPLQND 688 (2062)
Q Consensus 677 RLLLTGTPLQNs 688 (2062)
|++|.|=+-|..
T Consensus 960 rvVLVGD~~QL~ 971 (1623)
T PRK14712 960 RAVASGDTDQLQ 971 (1623)
T ss_pred EEEEEcchhhcC
Confidence 899999887754
No 408
>PHA02244 ATPase-like protein
Probab=49.56 E-value=1e+02 Score=39.52 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=21.3
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHH
Q 000139 541 EKRLNGILADEMGLGKTIMTIAMLAH 566 (2062)
Q Consensus 541 ~~~~gGILADEMGLGKTIQaIALLa~ 566 (2062)
..+.+.+|.-++|.|||..+-++...
T Consensus 117 ~~~~PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 117 NANIPVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred hcCCCEEEECCCCCCHHHHHHHHHHH
Confidence 45788999999999999888776554
No 409
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=49.56 E-value=53 Score=37.22 Aligned_cols=136 Identities=16% Similarity=0.122 Sum_probs=68.2
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEE--ecCCcHHHHHHHHHHHCCCCeEEEEeCChhhHHhhhhccCCCCC
Q 000139 547 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIV--VPTSVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNS 624 (2062)
Q Consensus 547 ILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIV--vPtSLL~QW~~Efkkw~P~lkVl~y~Gs~kerk~~r~gw~k~~~ 624 (2062)
.+.--.|-|||-.++++...... .| .+++|| .-.. ...=+..+-+-+|++.+..+..... |...+.
T Consensus 6 ~vy~g~G~Gkt~~a~g~~~ra~~-~g--~~v~~vQFlKg~-~~~gE~~~l~~l~~v~~~~~g~~~~--------~~~~~~ 73 (159)
T cd00561 6 QVYTGNGKGKTTAALGLALRALG-HG--YRVGVVQFLKGG-WKYGELKALERLPNIEIHRMGRGFF--------WTTEND 73 (159)
T ss_pred EEECCCCCCHHHHHHHHHHHHHH-CC--CeEEEEEEeCCC-CccCHHHHHHhCCCcEEEECCCCCc--------cCCCCh
Confidence 34556799999999888766543 33 255653 1111 0001223334446665555322100 000000
Q ss_pred ceEEEEehhhhhhchhhhhccCeeEEEEcCccccCCh----hhHHHHHHHcccCceEEEEeccCCCCChHHHHH
Q 000139 625 FHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNW----KSQRWQTLLNFNSKRRILLTGTPLQNDLMELWS 694 (2062)
Q Consensus 625 fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~----~Sk~~qaL~~L~a~~RLLLTGTPLQNsL~ELwS 694 (2062)
....-..-..+......+....+++|||||.=..-+. .......+.+-....-+.|||-=.+..+.|+..
T Consensus 74 ~~~~~~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 74 EEDIAAAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 0000000011112233455678999999998776432 234455555545556899999866555555443
No 410
>PRK10865 protein disaggregation chaperone; Provisional
Probab=49.46 E-value=53 Score=46.50 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=25.4
Q ss_pred HHHHHHHh--hcCCcEEEEcCCCChHHHHHHHHHHHH
Q 000139 533 LDWLVTMY--EKRLNGILADEMGLGKTIMTIAMLAHL 567 (2062)
Q Consensus 533 L~WLv~l~--~~~~gGILADEMGLGKTIQaIALLa~L 567 (2062)
+..++... ....|.||.-+.|.|||..+-++...+
T Consensus 187 i~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 187 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred HHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 66666533 344578999999999998887766554
No 411
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.42 E-value=51 Score=41.87 Aligned_cols=96 Identities=19% Similarity=0.202 Sum_probs=51.0
Q ss_pred EEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCeEEEEeCChhhHHhhhhccCCCCCceE
Q 000139 548 LADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNSFHV 627 (2062)
Q Consensus 548 LADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw~P~lkVl~y~Gs~kerk~~r~gw~k~~~fdV 627 (2062)
+.-=.|.|||-++.-+..++ ..+| |++.||.+-+ --.---+.++.|.-..+|-.| |+..+...
T Consensus 106 fVGLqG~GKTTtc~KlA~y~-kkkG-~K~~LvcaDT-FRagAfDQLkqnA~k~~iP~y-gsyte~dp------------- 168 (483)
T KOG0780|consen 106 FVGLQGSGKTTTCTKLAYYY-KKKG-YKVALVCADT-FRAGAFDQLKQNATKARVPFY-GSYTEADP------------- 168 (483)
T ss_pred EEeccCCCcceeHHHHHHHH-HhcC-CceeEEeecc-cccchHHHHHHHhHhhCCeeE-ecccccch-------------
Confidence 45568999997765555544 3343 4555554433 222223334444433333333 32211100
Q ss_pred EEEehhhhhhchhhhhccCeeEEEEcCccccCChhhH
Q 000139 628 CITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQ 664 (2062)
Q Consensus 628 VITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk 664 (2062)
..+.......|++-+|++||+|=+-|.+-..+.
T Consensus 169 ----v~ia~egv~~fKke~fdvIIvDTSGRh~qe~sL 201 (483)
T KOG0780|consen 169 ----VKIASEGVDRFKKENFDVIIVDTSGRHKQEASL 201 (483)
T ss_pred ----HHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHH
Confidence 112333456688888999999988777655544
No 412
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=49.23 E-value=59 Score=45.73 Aligned_cols=87 Identities=17% Similarity=0.314 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHhhhCCCeEEEEeCc---hHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecc-
Q 000139 1067 KLQELAILLRKLKSDGHRALIFTQM---TKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTR- 1142 (2062)
Q Consensus 1067 KLq~L~~LLrkLks~GhKVLIFSQ~---t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTr- 1142 (2062)
-+..+..+++++-. =.|||.+- ....+.|..+|..+|+....+... ....++.|.. +.+.|++-...
T Consensus 323 ~~e~~~elvk~lG~---GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~-GeidvLVGvAsy 393 (1187)
T COG1110 323 SLEKVVELVKKLGD---GGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEE-GEVDVLVGVASY 393 (1187)
T ss_pred cHHHHHHHHHHhCC---CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhcc-CceeEEEEeccc
Confidence 45566777877744 46999998 888999999999999998776542 2578999975 78888776433
Q ss_pred --ccccccCccc-CCEEEEecCC
Q 000139 1143 --SGGVGINLVG-ADTVIFYDSD 1162 (2062)
Q Consensus 1143 --AGG~GLNLT~-ADtVIfyD~d 1162 (2062)
..-.||+|.. .-.+|||..|
T Consensus 394 YG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 394 YGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred ccceeecCCchhheeEEEEecCC
Confidence 3446999965 8899999986
No 413
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=48.60 E-value=1.4e+02 Score=35.99 Aligned_cols=39 Identities=26% Similarity=0.509 Sum_probs=28.1
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCCcEEEE-e-cCCcHHHHHHHH
Q 000139 552 MGLGKTIMTIAMLAHLACEKGIWGPHLIV-V-PTSVMLNWETEF 593 (2062)
Q Consensus 552 MGLGKTIQaIALLa~L~~~~g~~Gp~LIV-v-PtSLL~QW~~Ef 593 (2062)
=|.|||-.+++|...+... | +++.|| + |..-+..|..--
T Consensus 11 GGaGKTT~~~~LAs~la~~-G--~~V~lIDaDpn~pl~~W~~~a 51 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAAR-G--ARVALIDADPNQPLAKWAENA 51 (231)
T ss_pred CCCcHHHHHHHHHHHHHHC-C--CeEEEEeCCCCCcHHHHHHhc
Confidence 3899999888888877653 3 355555 3 788888996654
No 414
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=48.42 E-value=54 Score=41.95 Aligned_cols=131 Identities=12% Similarity=0.039 Sum_probs=61.0
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC--CcHHHHHHHHHHHCCCCeEE-EEeCChhhHHhhhhccCCCC
Q 000139 547 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT--SVMLNWETEFLKWCPAFKIL-TYFGSAKERKFKRQGWLKPN 623 (2062)
Q Consensus 547 ILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt--SLL~QW~~Efkkw~P~lkVl-~y~Gs~kerk~~r~gw~k~~ 623 (2062)
|+.--.|.|||..++..+............+||+-|+ ++-.+=-.+|...++.+.+. .+..+...-... ....
T Consensus 5 i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~~i~----~~~~ 80 (396)
T TIGR01547 5 IAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSMEIK----ILNT 80 (396)
T ss_pred EEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCccEEE----ecCC
Confidence 4555689999998876666555542123456667676 23333333333322211110 111000000000 0000
Q ss_pred CceEEEEehhhhhhchhhhhcc-CeeEEEEcCccccCChhhHHHHHHHccc---CceEEEEeccCCC
Q 000139 624 SFHVCITTYRLIIQDSKVFKRK-KWKYLILDEAHLIKNWKSQRWQTLLNFN---SKRRILLTGTPLQ 686 (2062)
Q Consensus 624 ~fdVVITSYe~l~~d~~~L~r~-~W~lVILDEAH~IKN~~Sk~~qaL~~L~---a~~RLLLTGTPLQ 686 (2062)
+-.|++-.- ..+...++.. ...++++|||..+.. ....+++.+++ +..++++|.||-.
T Consensus 81 g~~i~f~g~---~d~~~~ik~~~~~~~~~idEa~~~~~--~~~~~l~~rlr~~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 81 GKKFIFKGL---NDKPNKLKSGAGIAIIWFEEASQLTF--EDIKELIPRLRETGGKKFIIFSSNPES 142 (396)
T ss_pred CeEEEeecc---cCChhHhhCcceeeeehhhhhhhcCH--HHHHHHHHHhhccCCccEEEEEcCcCC
Confidence 111222111 1223334443 359999999999843 22223333343 2336999999964
No 415
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=48.41 E-value=1.9e+02 Score=37.42 Aligned_cols=135 Identities=14% Similarity=0.125 Sum_probs=69.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCeEEEEeCChhhHHhhhhccCCC
Q 000139 543 RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKP 622 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw~P~lkVl~y~Gs~kerk~~r~gw~k~ 622 (2062)
++...|--.+|.|||- |||=|++..........+=||.--+=---=...|+.++--+
T Consensus 203 ~~vi~LVGPTGVGKTT-TlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im---------------------- 259 (407)
T COG1419 203 KRVIALVGPTGVGKTT-TLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIM---------------------- 259 (407)
T ss_pred CcEEEEECCCCCcHHH-HHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHh----------------------
Confidence 3344678899999995 44555544331222234444433221111122233222100
Q ss_pred CCceEEEEehhhhhhchhhhhccCeeEEEEcCccc-cCCh-hhHHHHHHHcc--cCceEEEEeccCCCCChHHHHHHHHH
Q 000139 623 NSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHL-IKNW-KSQRWQTLLNF--NSKRRILLTGTPLQNDLMELWSLMHF 698 (2062)
Q Consensus 623 ~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~-IKN~-~Sk~~qaL~~L--~a~~RLLLTGTPLQNsL~ELwSLL~F 698 (2062)
+-.-.++.+..-+......+... ++|.+|=+=+ -++. ......++... ....-|.|++|-=.+.+++++.-+.+
T Consensus 260 ~vp~~vv~~~~el~~ai~~l~~~--d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~ 337 (407)
T COG1419 260 GVPLEVVYSPKELAEAIEALRDC--DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSL 337 (407)
T ss_pred CCceEEecCHHHHHHHHHHhhcC--CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhcc
Confidence 11113344455555444455444 8888886543 3332 12222333332 44577999999888888888887777
Q ss_pred hCCC
Q 000139 699 LMPH 702 (2062)
Q Consensus 699 L~P~ 702 (2062)
+...
T Consensus 338 ~~i~ 341 (407)
T COG1419 338 FPID 341 (407)
T ss_pred CCcc
Confidence 7443
No 416
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=48.27 E-value=68 Score=39.47 Aligned_cols=130 Identities=18% Similarity=0.183 Sum_probs=52.3
Q ss_pred cCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC--cHHH-HH--HHHHHHCCC-CeEEEEeCChhhHHhhhhccCCCC
Q 000139 550 DEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS--VMLN-WE--TEFLKWCPA-FKILTYFGSAKERKFKRQGWLKPN 623 (2062)
Q Consensus 550 DEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtS--LL~Q-W~--~Efkkw~P~-lkVl~y~Gs~kerk~~r~gw~k~~ 623 (2062)
---|+|||..+...+.......+. +..+|++|+. +..+ |. ..+..+.+. +.+..- .. . .+..+. .+
T Consensus 4 ~~r~~GKT~~~~~~~~~~~~~~~~-~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~----~~~~~~-~n 75 (384)
T PF03237_consen 4 GGRGSGKTTLIAIWFLWWALTRPP-GRRVIIASTYRQARDIFGRFWKGIIELLPSWFEIKFN-EW-N----DRKIIL-PN 75 (384)
T ss_dssp E-SSS-HHHHHHHHHHHHHHSSSS---EEEEEESSHHHHHHHHHHHHHHHHTS-TTTS--EE-EE------SSEEEE-TT
T ss_pred CCccccHHHHHHHHHHHHHhhCCC-CcEEEEecCHHHHHHHHHHhHHHHHHHHHHhcCcccc-cC-C----CCcEEe-cC
Confidence 347999999876666655543332 3567777764 2221 11 122222222 222111 00 0 001111 22
Q ss_pred CceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChh-hHHHHHHHcccCce-EEEEeccCCCCC
Q 000139 624 SFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWK-SQRWQTLLNFNSKR-RILLTGTPLQND 688 (2062)
Q Consensus 624 ~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~-Sk~~qaL~~L~a~~-RLLLTGTPLQNs 688 (2062)
+..|.+.++..- .....+....+++||+||+-.+.+.. +.....+..-.... +++.|.||-.++
T Consensus 76 G~~i~~~~~~~~-~~~~~~~G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~p~~~~~ 141 (384)
T PF03237_consen 76 GSRIQFRGADSP-DSGDNIRGFEYDLIIIDEAAKVPDDAFSELIRRLRATWGGSIRMYISTPPNPGG 141 (384)
T ss_dssp S-EEEEES------SHHHHHTS--SEEEEESGGGSTTHHHHHHHHHHHHCSTT--EEEEEE---SSS
T ss_pred ceEEEEeccccc-cccccccccccceeeeeecccCchHHHHHHHHhhhhcccCcceEEeecCCCCCC
Confidence 333444443321 13345667889999999988886532 22222222223333 335555554433
No 417
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=47.76 E-value=49 Score=46.78 Aligned_cols=35 Identities=20% Similarity=0.374 Sum_probs=25.6
Q ss_pred HHHHHHHhh--cCCcEEEEcCCCChHHHHHHHHHHHH
Q 000139 533 LDWLVTMYE--KRLNGILADEMGLGKTIMTIAMLAHL 567 (2062)
Q Consensus 533 L~WLv~l~~--~~~gGILADEMGLGKTIQaIALLa~L 567 (2062)
+.+++.... ...|.||.-+.|.|||..+-++...+
T Consensus 182 i~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 182 IRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred HHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 666665432 34577899999999999887766554
No 418
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=47.62 E-value=3e+02 Score=30.75 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=18.9
Q ss_pred EEEcCCCChHHHHHHHHHHHHHH
Q 000139 547 ILADEMGLGKTIMTIAMLAHLAC 569 (2062)
Q Consensus 547 ILADEMGLGKTIQaIALLa~L~~ 569 (2062)
++.-..|.|||..+..+...+..
T Consensus 4 ~~~G~~G~GKTt~~~~la~~~~~ 26 (173)
T cd03115 4 LLVGLQGVGKTTTAAKLALYLKK 26 (173)
T ss_pred EEECCCCCCHHHHHHHHHHHHHH
Confidence 56778999999999888877654
No 419
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=47.08 E-value=89 Score=37.17 Aligned_cols=51 Identities=24% Similarity=0.262 Sum_probs=34.0
Q ss_pred HHHHHHHH-HhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC
Q 000139 531 IGLDWLVT-MYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS 584 (2062)
Q Consensus 531 ~GL~WLv~-l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtS 584 (2062)
.+++-|+. -+..+...+++-+.|.|||+.++-++...+. .| .++|+|.---
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~-~g--e~~lyvs~ee 59 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQ-MG--EPGIYVALEE 59 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHH-cC--CcEEEEEeeC
Confidence 45555543 2333445578999999999999988877653 33 3778887433
No 420
>PRK04132 replication factor C small subunit; Provisional
Probab=46.65 E-value=71 Score=44.93 Aligned_cols=49 Identities=22% Similarity=0.246 Sum_probs=29.5
Q ss_pred CeeEEEEcCccccCChh-hHHHHHHHcccCceEEEEeccCCCCChHHHHH
Q 000139 646 KWKYLILDEAHLIKNWK-SQRWQTLLNFNSKRRILLTGTPLQNDLMELWS 694 (2062)
Q Consensus 646 ~W~lVILDEAH~IKN~~-Sk~~qaL~~L~a~~RLLLTGTPLQNsL~ELwS 694 (2062)
++.+|||||||++.... ..+.+.+.......+++|+.++...-+.-|-|
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrS 679 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS 679 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhh
Confidence 47899999999995321 11122222234667888888876544444443
No 421
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=46.40 E-value=3.1e+02 Score=36.98 Aligned_cols=35 Identities=20% Similarity=0.147 Sum_probs=21.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEe
Q 000139 546 GILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVV 581 (2062)
Q Consensus 546 GILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVv 581 (2062)
.+|.-..|.|||..+..|...+... +..+.+.+|.
T Consensus 353 IaLVGPtGvGKTTtaakLAa~la~~-~~gkkVaLId 387 (559)
T PRK12727 353 IALVGPTGAGKTTTIAKLAQRFAAQ-HAPRDVALVT 387 (559)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHh-cCCCceEEEe
Confidence 3456679999998887776655432 2223455543
No 422
>CHL00095 clpC Clp protease ATP binding subunit
Probab=46.34 E-value=66 Score=45.37 Aligned_cols=42 Identities=24% Similarity=0.285 Sum_probs=27.0
Q ss_pred cHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHH
Q 000139 526 REYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLA 568 (2062)
Q Consensus 526 RpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~ 568 (2062)
|+.++.-+--++.. ....|.||.-+.|.|||..+-++...+.
T Consensus 184 r~~ei~~~~~~L~r-~~~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 184 REKEIERVIQILGR-RTKNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred cHHHHHHHHHHHcc-cccCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 55555444332222 2345779999999999998877765543
No 423
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=46.30 E-value=1.7e+02 Score=36.63 Aligned_cols=43 Identities=19% Similarity=0.163 Sum_probs=26.6
Q ss_pred CcHHHHHHHHHHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHH
Q 000139 525 LREYQHIGLDWLVTMYE----KRLNGILADEMGLGKTIMTIAMLAHL 567 (2062)
Q Consensus 525 LRpYQ~~GL~WLv~l~~----~~~gGILADEMGLGKTIQaIALLa~L 567 (2062)
-++..+..+.-++.... ...+.+|.-..|+|||..+-++...+
T Consensus 29 G~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 29 GQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh
Confidence 35555555554433221 12356889999999998877655443
No 424
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=46.13 E-value=1.1e+02 Score=39.64 Aligned_cols=55 Identities=22% Similarity=0.189 Sum_probs=36.7
Q ss_pred HHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHH
Q 000139 533 LDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNW 589 (2062)
Q Consensus 533 L~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW 589 (2062)
|+-+...+..+.-.+|+-.+|.|||.-++.++.+.+...| .++|++..---..+.
T Consensus 185 LD~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g--~~vl~~SlEm~~~~i 239 (434)
T TIGR00665 185 LDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAAIKEG--KPVAFFSLEMSAEQL 239 (434)
T ss_pred hHhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCC--CeEEEEeCcCCHHHH
Confidence 4444333444444588999999999999998887765333 378888765444443
No 425
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=46.00 E-value=81 Score=37.46 Aligned_cols=37 Identities=19% Similarity=0.172 Sum_probs=27.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHhc---------CCCCcEEEEe
Q 000139 545 NGILADEMGLGKTIMTIAMLAHLACEK---------GIWGPHLIVV 581 (2062)
Q Consensus 545 gGILADEMGLGKTIQaIALLa~L~~~~---------g~~Gp~LIVv 581 (2062)
-|+|+-..|.|||..++.+++..+.-. ...+++|+++
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~ 48 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLS 48 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEE
Confidence 378899999999999999888765321 1345778887
No 426
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=45.95 E-value=83 Score=47.54 Aligned_cols=140 Identities=16% Similarity=0.064 Sum_probs=75.5
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhc-CCCCcEEEEecCCcHHHHHHHHHHH
Q 000139 518 PFLLKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEK-GIWGPHLIVVPTSVMLNWETEFLKW 596 (2062)
Q Consensus 518 P~lLk~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~-g~~Gp~LIVvPtSLL~QW~~Efkkw 596 (2062)
+..+...|-+-|+.++..++. ....-.+|---.|.|||.+.-+++..+.... .....++.++|+.-... ++..
T Consensus 961 ~~~~~~~Lt~~Q~~Av~~il~--s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk---~L~e- 1034 (1747)
T PRK13709 961 PGELMEGLTSGQRAATRMILE--STDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVG---EMRS- 1034 (1747)
T ss_pred HHHhcCCCCHHHHHHHHHHHh--CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHH---HHHh-
Confidence 334456799999999998775 2234557777799999988766665543211 11224677789864433 2222
Q ss_pred CCCCeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHccc-Cc
Q 000139 597 CPAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFN-SK 675 (2062)
Q Consensus 597 ~P~lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L~-a~ 675 (2062)
. ++...+++ ... .+. ...... .......-++||||||-++-+.. ....+..+. ..
T Consensus 1035 ~-Gi~A~TI~------s~L--~~~------------~~~~~~-~~~~~~~~~llIVDEaSMv~~~~--m~~Ll~~~~~~g 1090 (1747)
T PRK13709 1035 A-GVDAQTLA------SFL--HDT------------QLQQRS-GETPDFSNTLFLLDESSMVGNTD--MARAYALIAAGG 1090 (1747)
T ss_pred c-CcchhhHH------HHh--ccc------------cccccc-ccCCCCCCcEEEEEccccccHHH--HHHHHHhhhcCC
Confidence 1 11111100 000 000 000000 00011234899999999996533 333333343 35
Q ss_pred eEEEEeccCCCC
Q 000139 676 RRILLTGTPLQN 687 (2062)
Q Consensus 676 ~RLLLTGTPLQN 687 (2062)
.|++|.|=+-|-
T Consensus 1091 arvVLVGD~~QL 1102 (1747)
T PRK13709 1091 GRAVSSGDTDQL 1102 (1747)
T ss_pred CEEEEecchHhc
Confidence 789999987763
No 427
>PRK05748 replicative DNA helicase; Provisional
Probab=45.31 E-value=92 Score=40.74 Aligned_cols=60 Identities=15% Similarity=0.084 Sum_probs=41.2
Q ss_pred HHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHH
Q 000139 532 GLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEF 593 (2062)
Q Consensus 532 GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Ef 593 (2062)
+|+-+...+..+.-.|||--+|.|||.-++.++.+.+...| .+++++..----.+....+
T Consensus 192 ~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g--~~v~~fSlEms~~~l~~R~ 251 (448)
T PRK05748 192 DLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATKTD--KNVAIFSLEMGAESLVMRM 251 (448)
T ss_pred HHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCC--CeEEEEeCCCCHHHHHHHH
Confidence 45555444455555689999999999999999887764333 3788887665555554444
No 428
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=45.05 E-value=2.3e+02 Score=37.02 Aligned_cols=127 Identities=12% Similarity=0.144 Sum_probs=65.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEec-C-CcHHHHHHHHHHHCCCCeEEEEeCChhhHHhhhhccCCCC
Q 000139 546 GILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVP-T-SVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPN 623 (2062)
Q Consensus 546 GILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvP-t-SLL~QW~~Efkkw~P~lkVl~y~Gs~kerk~~r~gw~k~~ 623 (2062)
.++.-..|.|||.++.-++.++....|. .++||.= . .....| .+++|+....+-.+
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~~~G~--~V~Lit~Dt~R~aA~e--QLk~yAe~lgvp~~------------------ 283 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLHMGK--SVSLYTTDNYRIAAIE--QLKRYADTMGMPFY------------------ 283 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCC--eEEEecccchhhhHHH--HHHHHHHhcCCCee------------------
Confidence 3467789999999988887765443332 3444432 2 223334 34444321111111
Q ss_pred CceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHc----c----cCceEEEEeccCCCCChHHHHHH
Q 000139 624 SFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLN----F----NSKRRILLTGTPLQNDLMELWSL 695 (2062)
Q Consensus 624 ~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~----L----~a~~RLLLTGTPLQNsL~ELwSL 695 (2062)
....+..-...+....+++||||=+-+.-+.. .....+.. + .....|.|++|-=++.+.+....
T Consensus 284 -------~~~~~~~l~~~l~~~~~D~VLIDTaGr~~rd~-~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~ 355 (432)
T PRK12724 284 -------PVKDIKKFKETLARDGSELILIDTAGYSHRNL-EQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKA 355 (432)
T ss_pred -------ehHHHHHHHHHHHhCCCCEEEEeCCCCCccCH-HHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 00111111223344578999999766553222 22222221 1 23467889999777677776665
Q ss_pred HHHhCCC
Q 000139 696 MHFLMPH 702 (2062)
Q Consensus 696 L~FL~P~ 702 (2062)
+..+.++
T Consensus 356 f~~~~~~ 362 (432)
T PRK12724 356 YESLNYR 362 (432)
T ss_pred hcCCCCC
Confidence 5555443
No 429
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=44.57 E-value=50 Score=42.55 Aligned_cols=110 Identities=13% Similarity=0.280 Sum_probs=75.6
Q ss_pred cchHHHHHHHHHHhhhCCCeEEEEeC-chHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000139 1065 CGKLQELAILLRKLKSDGHRALIFTQ-MTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1143 (2062)
Q Consensus 1065 SGKLq~L~~LLrkLks~GhKVLIFSQ-~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrA 1143 (2062)
++-+.++...+..+...|.+||+... |-.+..++..+|...|+.+..+|......-...++. +
T Consensus 85 sSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~-----~----------- 148 (396)
T COG0626 85 SSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKE-----P----------- 148 (396)
T ss_pred cCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcc-----c-----------
Confidence 34466666655555566777777665 888899999999999999888887776443333222 1
Q ss_pred cccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHH
Q 000139 1144 GGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKK 1202 (2062)
Q Consensus 1144 GG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkk 1202 (2062)
--.+||+++|-||.+..+=+.++-|+..... ..+|.-||+=-=++++
T Consensus 149 ---------~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g---~~vvVDNTfatP~~q~ 195 (396)
T COG0626 149 ---------NTKLVFLETPSNPLLEVPDIPAIARLAKAYG---ALVVVDNTFATPVLQR 195 (396)
T ss_pred ---------CceEEEEeCCCCcccccccHHHHHHHHHhcC---CEEEEECCcccccccC
Confidence 1247999999999998887777766655444 4567778876555544
No 430
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=44.39 E-value=29 Score=41.57 Aligned_cols=55 Identities=15% Similarity=0.323 Sum_probs=43.2
Q ss_pred CCCCCChhhhHHHHHHHHhcCCCchhHHHHhhccccCccccccccCChhhHHHHHHHHHHHHHhCC
Q 000139 1659 SPDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVP 1724 (2062)
Q Consensus 1659 ~~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~ 1724 (2062)
.++.||++||.+|+.+--.||.-|..|+-.| ++ |.-..=+--|...++|-...-.
T Consensus 61 krg~fT~eEe~~Ii~lH~~~GNrWs~IA~~L---PG--------RTDNeIKN~Wnt~lkkkl~~~~ 115 (238)
T KOG0048|consen 61 KRGNFSDEEEDLIIKLHALLGNRWSLIAGRL---PG--------RTDNEVKNHWNTHLKKKLLKMG 115 (238)
T ss_pred cCCCCCHHHHHHHHHHHHHHCcHHHHHHhhC---CC--------cCHHHHHHHHHHHHHHHHHHcC
Confidence 4899999999999999999999999999988 33 5555555557777666555444
No 431
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=44.22 E-value=12 Score=50.06 Aligned_cols=73 Identities=15% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHCCCCeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhc---hhhhhccCeeEEEEcCccccCChhhHHH
Q 000139 590 ETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQD---SKVFKRKKWKYLILDEAHLIKNWKSQRW 666 (2062)
Q Consensus 590 ~~Efkkw~P~lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d---~~~L~r~~W~lVILDEAH~IKN~~Sk~~ 666 (2062)
..++.......++-.|||+...- ...++|+..|+.+... ...=-..+-..|||||||++-+.-...+
T Consensus 299 iEdLv~lGk~~~~CPYY~SR~av----------p~aqlV~LPYQ~LL~~stR~slgI~LkdsIvIiDEAHNlidti~smh 368 (821)
T KOG1133|consen 299 IEDLVALGKELRGCPYYASRRAV----------PQAQLVTLPYQLLLHESTRKSLGISLKDSIVIIDEAHNLIDTICSMH 368 (821)
T ss_pred HHHHHHhhhhcCCCCchhhhhcc----------ccccEEeccHHHHHhHHHHHhcCccccccEEEEechhHHHHHHHHhh
Q ss_pred HHHHcc
Q 000139 667 QTLLNF 672 (2062)
Q Consensus 667 qaL~~L 672 (2062)
-+-..+
T Consensus 369 sa~Is~ 374 (821)
T KOG1133|consen 369 SAEISF 374 (821)
T ss_pred hhheeH
No 432
>PRK10824 glutaredoxin-4; Provisional
Probab=44.18 E-value=85 Score=33.76 Aligned_cols=71 Identities=13% Similarity=0.213 Sum_probs=45.9
Q ss_pred HHHHhhhCCCeEEEEeC------chHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhc-CCCceEEEEecccccc
Q 000139 1074 LLRKLKSDGHRALIFTQ------MTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNT-NPKIFLFILSTRSGGV 1146 (2062)
Q Consensus 1074 LLrkLks~GhKVLIFSQ------~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~-D~~IfVfLLSTrAGG~ 1146 (2062)
.+.++.+ .++|+||+. +-..-.....+|+..|+.|..++=....+-|+. +..+.. ..-..|||=....||.
T Consensus 7 ~v~~~I~-~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~-l~~~sg~~TVPQIFI~G~~IGG~ 84 (115)
T PRK10824 7 KIQRQIA-ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAE-LPKYANWPTFPQLWVDGELVGGC 84 (115)
T ss_pred HHHHHHh-cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHH-HHHHhCCCCCCeEEECCEEEcCh
Confidence 3444333 579999997 556778888888888988776655545555555 444433 3345567766666764
No 433
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=43.75 E-value=51 Score=44.19 Aligned_cols=137 Identities=18% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-----CcHHHHHHHHHHHCCCCeEEEEeCChh
Q 000139 536 LVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-----SVMLNWETEFLKWCPAFKILTYFGSAK 610 (2062)
Q Consensus 536 Lv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-----SLL~QW~~Efkkw~P~lkVl~y~Gs~k 610 (2062)
|+.....+.--|+--|+|.|||-|.=-+|..-..-++... +-+--|. |+-..-..|+ +.+...-.|-.
T Consensus 273 ll~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~-IgcTQPRRVAAmSVAaRVA~EM-----gvkLG~eVGYs- 345 (902)
T KOG0923|consen 273 LLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKK-IGCTQPRRVAAMSVAARVAEEM-----GVKLGHEVGYS- 345 (902)
T ss_pred HHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCce-EeecCcchHHHHHHHHHHHHHh-----CcccccccceE-
Q ss_pred hHHhhhhccCCCCCceEEEEehhhhhhc-hhhhhccCeeEEEEcCccccCChhhHHHHHHHcc----cCceEEEEecc
Q 000139 611 ERKFKRQGWLKPNSFHVCITTYRLIIQD-SKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNF----NSKRRILLTGT 683 (2062)
Q Consensus 611 erk~~r~gw~k~~~fdVVITSYe~l~~d-~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L----~a~~RLLLTGT 683 (2062)
+|-.-.....--+-.+|-.++.+. .....--.+.+|||||||-=.-..--++-.+..+ .--..|+.|||
T Consensus 346 ----IRFEdcTSekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKllIsSAT 419 (902)
T KOG0923|consen 346 ----IRFEDCTSEKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLLISSAT 419 (902)
T ss_pred ----EEeccccCcceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEEeeccc
No 434
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=43.68 E-value=32 Score=43.28 Aligned_cols=62 Identities=23% Similarity=0.390 Sum_probs=47.2
Q ss_pred CCCChhhhHHHHHHHHhc----------CCCchhHHHHhhccccCccccccccCChhhHHHHHHHHHHHHHhCCCCCcc
Q 000139 1661 DVWLPQEDAILCAVVHEY----------GPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVPDNSIN 1729 (2062)
Q Consensus 1661 ~~w~~~ed~~l~~~v~~~----------g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~~~~~~ 1729 (2062)
..|+-+|=.+|..+-++. |+.|.-||..+ ...|..|+|.+|+.||.+|.++|-.+.......
T Consensus 55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~-------~~~g~~rs~~qck~K~~nl~k~Yk~~k~~~~~~ 126 (345)
T KOG4282|consen 55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKM-------AELGYPRSPKQCKAKIENLKKKYKKEKAKKEGS 126 (345)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHH-------HHhCCCCCHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 678877766666554443 34599999955 267788999999999999999999887665544
No 435
>PRK07004 replicative DNA helicase; Provisional
Probab=43.33 E-value=72 Score=41.98 Aligned_cols=59 Identities=19% Similarity=0.134 Sum_probs=39.7
Q ss_pred HHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHH
Q 000139 533 LDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEF 593 (2062)
Q Consensus 533 L~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Ef 593 (2062)
|+-+...+..+.-.|||--+|+|||.-++.++.+.+...+ .|++++..----.++...+
T Consensus 203 LD~~t~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~~--~~v~~fSlEM~~~ql~~R~ 261 (460)
T PRK07004 203 LDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYG--LPVAVFSMEMPGTQLAMRM 261 (460)
T ss_pred hcccccCCCCCceEEEEeCCCCCccHHHHHHHHHHHHHcC--CeEEEEeCCCCHHHHHHHH
Confidence 3444333444545689999999999999998887765433 4788887665555554444
No 436
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=43.12 E-value=1.4e+02 Score=38.84 Aligned_cols=52 Identities=15% Similarity=0.112 Sum_probs=29.4
Q ss_pred CeeEEEEcCccccCChhhHHHHHHHcc-----cCceEEEEeccCCCCChHHHHHHHHH
Q 000139 646 KWKYLILDEAHLIKNWKSQRWQTLLNF-----NSKRRILLTGTPLQNDLMELWSLMHF 698 (2062)
Q Consensus 646 ~W~lVILDEAH~IKN~~Sk~~qaL~~L-----~a~~RLLLTGTPLQNsL~ELwSLL~F 698 (2062)
..++|++|.+=+..+. ......+..| .....|.|++|--.+.+.+...-+..
T Consensus 269 ~~d~VLIDTaGrsqrd-~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~ 325 (420)
T PRK14721 269 GKHMVLIDTVGMSQRD-QMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQG 325 (420)
T ss_pred CCCEEEecCCCCCcch-HHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhcC
Confidence 4688999987443322 2233333333 23456889999666666665544443
No 437
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=42.82 E-value=36 Score=40.68 Aligned_cols=41 Identities=27% Similarity=0.511 Sum_probs=26.6
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEe--cCCcHHHH
Q 000139 547 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVV--PTSVMLNW 589 (2062)
Q Consensus 547 ILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVv--PtSLL~QW 589 (2062)
|..--=|.|||.+|+-+..+++...| .++|+|= |..-+..|
T Consensus 7 v~n~KGGvGKTT~a~nLa~~La~~~~--~kVLliDlDpQ~s~t~~ 49 (259)
T COG1192 7 VANQKGGVGKTTTAVNLAAALAKRGG--KKVLLIDLDPQGSLTSW 49 (259)
T ss_pred EEecCCCccHHHHHHHHHHHHHHhcC--CcEEEEeCCCcchhhHh
Confidence 33444589999999999888874443 3667763 54444333
No 438
>PRK09165 replicative DNA helicase; Provisional
Probab=42.75 E-value=1.3e+02 Score=40.12 Aligned_cols=62 Identities=18% Similarity=-0.013 Sum_probs=41.1
Q ss_pred HHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcC------------CCCcEEEEecCCcHHHHHHHH
Q 000139 532 GLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKG------------IWGPHLIVVPTSVMLNWETEF 593 (2062)
Q Consensus 532 GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g------------~~Gp~LIVvPtSLL~QW~~Ef 593 (2062)
+|+-+...+..+.-.|||--+|+|||.-++.++...+...+ ...++|++..---..++..-+
T Consensus 206 ~LD~~~gG~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R~ 279 (497)
T PRK09165 206 DLDSKLGGLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRI 279 (497)
T ss_pred HHhhhcCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHHH
Confidence 44555444444555689999999999999888877764321 124778887665556655544
No 439
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=42.72 E-value=37 Score=38.83 Aligned_cols=48 Identities=27% Similarity=0.286 Sum_probs=31.1
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHH
Q 000139 541 EKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLK 595 (2062)
Q Consensus 541 ~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkk 595 (2062)
.++.|.+|.-.+|.|||..++|++..+.. +|. +++++. +..+..+++.
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~-~g~--~v~f~~----~~~L~~~l~~ 92 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIR-KGY--SVLFIT----ASDLLDELKQ 92 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHH-TT----EEEEE----HHHHHHHHHC
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhcc-CCc--ceeEee----cCceeccccc
Confidence 45667788889999999999998877654 443 455553 3445555543
No 440
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=42.54 E-value=1.4e+02 Score=39.12 Aligned_cols=34 Identities=24% Similarity=0.214 Sum_probs=24.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEe
Q 000139 546 GILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVV 581 (2062)
Q Consensus 546 GILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVv 581 (2062)
.+++-..|.|||.++.-+..++....| .++++|.
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~~~~g--~kV~lV~ 135 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLKKKQG--KKVLLVA 135 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhCC--CeEEEEe
Confidence 467889999999998888777653333 2455554
No 441
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=41.86 E-value=3.4e+02 Score=32.11 Aligned_cols=37 Identities=16% Similarity=0.372 Sum_probs=23.9
Q ss_pred CeeEEEEcCccccCChhh---HHHHHHHcc-cCceEEEEec
Q 000139 646 KWKYLILDEAHLIKNWKS---QRWQTLLNF-NSKRRILLTG 682 (2062)
Q Consensus 646 ~W~lVILDEAH~IKN~~S---k~~qaL~~L-~a~~RLLLTG 682 (2062)
..++||||..|.+.+... ..+..+..+ ....++++|+
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts 137 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTS 137 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 579999999999987532 222223333 3455677776
No 442
>PRK07952 DNA replication protein DnaC; Validated
Probab=41.48 E-value=91 Score=37.67 Aligned_cols=62 Identities=21% Similarity=0.190 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHhh---cC-CcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHH
Q 000139 527 EYQHIGLDWLVTMYE---KR-LNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLK 595 (2062)
Q Consensus 527 pYQ~~GL~WLv~l~~---~~-~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkk 595 (2062)
+.|..++..+..... .+ .+-+|.-..|.|||..+.+++.++... + .+++++ .+..|...++.
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~-g--~~v~~i----t~~~l~~~l~~ 144 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR-G--KSVLII----TVADIMSAMKD 144 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc-C--CeEEEE----EHHHHHHHHHH
Confidence 456666665554322 22 355789999999999999998887652 2 244444 35666666654
No 443
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=41.36 E-value=41 Score=46.04 Aligned_cols=67 Identities=18% Similarity=0.071 Sum_probs=44.6
Q ss_pred CcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCC-CCcEEEEecC-CcHHHHHHHHHHHC
Q 000139 525 LREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGI-WGPHLIVVPT-SVMLNWETEFLKWC 597 (2062)
Q Consensus 525 LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~-~Gp~LIVvPt-SLL~QW~~Efkkw~ 597 (2062)
|.+-|+.++.+ . ....++---.|.|||.+.+.-++++....+. ...+|+|+.+ ....+-...+.+.+
T Consensus 2 Ln~~Q~~av~~-----~-~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY-----V-TGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC-----C-CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 67889888753 2 3345555569999999999999998865443 3446776654 44555555555543
No 444
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=41.08 E-value=1.1e+02 Score=33.98 Aligned_cols=82 Identities=15% Similarity=0.003 Sum_probs=57.0
Q ss_pred ccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHc----CCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEE
Q 000139 1064 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLY----GYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFIL 1139 (2062)
Q Consensus 1064 dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~----Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLL 1139 (2062)
...++..+..|+.+....|+||+|++.-...+..|-..|=.. -+.+.+..+.. .....|+|
T Consensus 11 ~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~~--------------~~~~PV~l- 75 (142)
T PRK05728 11 LSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTFRDESFLPHGLAGEGP--------------AAGQPVLL- 75 (142)
T ss_pred chhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCcCCCCC--------------CCCCCEEE-
Confidence 356899999999999999999999999999999999999422 23333322221 12344544
Q ss_pred eccccccccCcccCCEEEEecCCC
Q 000139 1140 STRSGGVGINLVGADTVIFYDSDW 1163 (2062)
Q Consensus 1140 STrAGG~GLNLT~ADtVIfyD~dW 1163 (2062)
+. +..-|..+++.+|++++.+
T Consensus 76 ~~---~~~~~~~~~~~LinL~~~~ 96 (142)
T PRK05728 76 TW---PGKRNANHRDLLINLDGAV 96 (142)
T ss_pred Ec---CCCCCCCCCcEEEECCCCC
Confidence 31 1134667788899998765
No 445
>PRK04328 hypothetical protein; Provisional
Probab=40.72 E-value=1.1e+02 Score=36.81 Aligned_cols=47 Identities=26% Similarity=0.299 Sum_probs=30.9
Q ss_pred HHHHHHHH-hhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEe
Q 000139 532 GLDWLVTM-YEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVV 581 (2062)
Q Consensus 532 GL~WLv~l-~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVv 581 (2062)
||+-|+.- +..+...+|+-+.|.|||+.++-++...+. .| .+.++|.
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~-~g--e~~lyis 58 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQ-MG--EPGVYVA 58 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHh-cC--CcEEEEE
Confidence 45555431 223344467999999999999998877543 33 3667776
No 446
>CHL00176 ftsH cell division protein; Validated
Probab=40.48 E-value=77 Score=43.41 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=19.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHH
Q 000139 543 RLNGILADEMGLGKTIMTIAMLAH 566 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIALLa~ 566 (2062)
..|.+|.-+.|.|||..+=++...
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 456789999999999988776443
No 447
>PHA02518 ParA-like protein; Provisional
Probab=40.42 E-value=1.1e+02 Score=35.01 Aligned_cols=40 Identities=25% Similarity=0.445 Sum_probs=28.2
Q ss_pred EcCCCChHHHHHHHHHHHHHHhcCCCCcEEEE--ecCCcHHHHHH
Q 000139 549 ADEMGLGKTIMTIAMLAHLACEKGIWGPHLIV--VPTSVMLNWET 591 (2062)
Q Consensus 549 ADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIV--vPtSLL~QW~~ 591 (2062)
..-=|.|||..++.+...+.. .| .++|+| -|-..+..|..
T Consensus 7 ~~KGGvGKTT~a~~la~~la~-~g--~~vlliD~D~q~~~~~~~~ 48 (211)
T PHA02518 7 NQKGGAGKTTVATNLASWLHA-DG--HKVLLVDLDPQGSSTDWAE 48 (211)
T ss_pred cCCCCCCHHHHHHHHHHHHHh-CC--CeEEEEeCCCCCChHHHHH
Confidence 344589999999888887764 33 356666 37777778864
No 448
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=40.29 E-value=1.5e+02 Score=34.00 Aligned_cols=35 Identities=20% Similarity=0.249 Sum_probs=23.1
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC
Q 000139 547 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS 584 (2062)
Q Consensus 547 ILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtS 584 (2062)
++.-.|+.|||...|..+..+.. .+ .++||+-|..
T Consensus 5 ~i~GpM~sGKS~eLi~~~~~~~~-~~--~~v~~~kp~~ 39 (176)
T PF00265_consen 5 FITGPMFSGKSTELIRRIHRYEI-AG--KKVLVFKPAI 39 (176)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHH-TT---EEEEEEEST
T ss_pred EEECCcCChhHHHHHHHHHHHHh-CC--CeEEEEEecc
Confidence 34567999999888777655533 22 3677777753
No 449
>PRK14873 primosome assembly protein PriA; Provisional
Probab=40.23 E-value=1.2e+02 Score=41.77 Aligned_cols=79 Identities=19% Similarity=0.151 Sum_probs=66.1
Q ss_pred ccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHH-cC-CcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEec
Q 000139 1064 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISL-YG-YTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILST 1141 (2062)
Q Consensus 1064 dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~-~G-i~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLST 1141 (2062)
.|||-..+..++......|..|||...-......+...|.. .| ..+..+++..+..+|...-.+... +.+.| ++.|
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~-G~~~I-ViGt 247 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLR-GQARV-VVGT 247 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhC-CCCcE-EEEc
Confidence 58999999999999999999999999988888877777754 34 678999999999999988888764 55666 6777
Q ss_pred ccc
Q 000139 1142 RSG 1144 (2062)
Q Consensus 1142 rAG 1144 (2062)
|++
T Consensus 248 RSA 250 (665)
T PRK14873 248 RSA 250 (665)
T ss_pred cee
Confidence 876
No 450
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=40.14 E-value=37 Score=43.56 Aligned_cols=38 Identities=21% Similarity=0.261 Sum_probs=25.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcH
Q 000139 543 RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVM 586 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL 586 (2062)
..|.+|.-+.|.|||..+-++...+. .+++.|....++
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~~------~~~i~v~~~~l~ 202 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHETN------ATFIRVVGSELV 202 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHhC------CCEEEeehHHHh
Confidence 45678999999999998877655431 245555444444
No 451
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=40.11 E-value=67 Score=44.67 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=17.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHH
Q 000139 543 RLNGILADEMGLGKTIMTIAMLA 565 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIALLa 565 (2062)
+.|.+|.-..|.|||..+-++..
T Consensus 212 ~~giLL~GppGtGKT~laraia~ 234 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVAN 234 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHH
Confidence 45668899999999977655443
No 452
>PRK08840 replicative DNA helicase; Provisional
Probab=40.06 E-value=1.5e+02 Score=39.26 Aligned_cols=59 Identities=17% Similarity=0.120 Sum_probs=40.5
Q ss_pred HHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHH
Q 000139 533 LDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEF 593 (2062)
Q Consensus 533 L~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Ef 593 (2062)
|+-+...+..+.-.|||--+|+|||.-++.++...+...+ .|++++..---..++...+
T Consensus 207 LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~~~--~~v~~fSlEMs~~ql~~Rl 265 (464)
T PRK08840 207 LNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQD--KPVLIFSLEMPAEQLMMRM 265 (464)
T ss_pred HHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHhCC--CeEEEEeccCCHHHHHHHH
Confidence 4444444455555689999999999999887777654332 4788887766666665544
No 453
>CHL00095 clpC Clp protease ATP binding subunit
Probab=39.87 E-value=4.3e+02 Score=37.60 Aligned_cols=42 Identities=17% Similarity=0.144 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhhc----------CCc-EEEEcCCCChHHHHHHHHHHHHHH
Q 000139 528 YQHIGLDWLVTMYEK----------RLN-GILADEMGLGKTIMTIAMLAHLAC 569 (2062)
Q Consensus 528 YQ~~GL~WLv~l~~~----------~~g-GILADEMGLGKTIQaIALLa~L~~ 569 (2062)
-|..++.-+...... ..+ -+++-.+|.|||..|-++...+.+
T Consensus 513 GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~ 565 (821)
T CHL00095 513 GQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFG 565 (821)
T ss_pred ChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcC
Confidence 477777766544321 122 378999999999998887766643
No 454
>KOG0442 consensus Structure-specific endonuclease ERCC1-XPF, catalytic component XPF/ERCC4 [Replication, recombination and repair]
Probab=39.64 E-value=4.6e+02 Score=36.80 Aligned_cols=266 Identities=19% Similarity=0.211 Sum_probs=122.5
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHC-CCCe
Q 000139 523 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWC-PAFK 601 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw~-P~lk 601 (2062)
..|.+||+..+.=++. .-||++--..|||=--.++.++... -..|..+.|+- ...|..+ |+ ..++
T Consensus 12 ~~lL~Ye~qv~~~ll~----~d~~L~V~a~GLsl~~l~~~~l~~~----s~~~sL~LvLN---~~~~ee~---~f~s~lk 77 (892)
T KOG0442|consen 12 MALLEYEQQVLLELLE----ADGNLLVLAPGLSLLRLVAELLILF----SPPGSLVLVLN---TQEAEEE---YFSSKLK 77 (892)
T ss_pred cccchhHHHHHHhhhc----ccCceEEecCCcCHHHHHHHHHHHh----CCccceEEEec---CchhhHH---HHHHhcC
Confidence 3488999998876652 4455666668988655554444332 22233333333 3345555 22 1111
Q ss_pred EEEEeCChh-hHHhhhhccCCCCCceEEEEehhhhhhch--hhhhccCeeEEEEcCccccCChhhHHHHHHHcccCceEE
Q 000139 602 ILTYFGSAK-ERKFKRQGWLKPNSFHVCITTYRLIIQDS--KVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRI 678 (2062)
Q Consensus 602 Vl~y~Gs~k-erk~~r~gw~k~~~fdVVITSYe~l~~d~--~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L~a~~RL 678 (2062)
....+-... ....+|...+-.++ |++.|-..+..|. ..+.--+..-++++=||.|.|. ++-.-.++-++.++++
T Consensus 78 ~~~~t~~~s~ls~~~R~~~Yl~GG--v~fiSsRiLvvDlLt~rIp~~ki~gI~vl~Ah~i~et-s~eaFIlRl~R~knk~ 154 (892)
T KOG0442|consen 78 EPLVTEDPSELSVNKRRSKYLEGG--VFFISSRILVVDLLTGRIPTEKITGILVLNAHTISET-SQEAFILRLYRSKNKT 154 (892)
T ss_pred cCCCccChhhcchhhhHHhhhcCC--eEEeeeceeeeehhcCccchhHcceEEEechhhhhhc-chhHHHHHHHHHhcCC
Confidence 111111111 11111111111122 5555555555442 2233345688999999999874 3333344444444443
Q ss_pred ----EEeccCC--CCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCc----cccccccc---HHHHHHHHHhhhhhh-
Q 000139 679 ----LLTGTPL--QNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGM----VEGQEKVN---KEVVDRLHNVLRPFI- 744 (2062)
Q Consensus 679 ----LLTGTPL--QNsL~ELwSLL~FL~P~iF~s~~eFkewFsnPisg~----~eg~~~~n---~~~i~rLhkvLrpFm- 744 (2062)
+.|--|- .-.+.-+-..|++|.....--+..|...+..++... ++...... ..+-..|-.+++.++
T Consensus 155 gfIkAFsd~P~sf~~gf~~l~r~mR~Lfvr~v~l~PRF~~~V~s~L~~~~~kVvei~V~~s~~~~~iQ~~lleii~~clr 234 (892)
T KOG0442|consen 155 GFIKAFSDSPESFVSGFSHLERKMRNLFVRHVLLWPRFHVNVESSLNQLPPKVVEINVSMSNSMSQIQSHLLEIIKKCLR 234 (892)
T ss_pred cceeccccCchhhhccchHHHHHHHHHHhhhheeccchHhHHhhhhccCCCceEEEEeecCccHHHHHHHHHHHHHHHHH
Confidence 3444442 223445556666664333333445555554444332 11111111 112222344444443
Q ss_pred -hhhhhhh--Hhhc-----CCC-------ceeEEEEecCCHHHHHHHHHHHHhHHHHHHhhhcchhhHHHHHHHHH
Q 000139 745 -LRRLKRD--VEKQ-----LPM-------KQEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISVIMQLR 805 (2062)
Q Consensus 745 -LRRtK~D--Vekq-----LP~-------K~EhVV~c~LSkrQR~LYdd~is~~~t~~~L~sgn~~silnvLmqLR 805 (2062)
++|.-.. ++.. +-+ ..-+-++-.++..++.+-.|+-....--..+..-...+.+.++-.||
T Consensus 235 el~r~n~~~~~ee~~~E~~~~~sf~~i~~~~Ld~~wh~ls~ktkqlv~Dl~~LR~Ll~~L~~~D~vsfl~~l~tlr 310 (892)
T KOG0442|consen 235 ELKRLNPELDMEEVNVENILDKSFDKILRSQLDPIWHQLSTKTKQLVNDLKTLRILLKSLVSYDAVSFLKILKTLR 310 (892)
T ss_pred HHHhhCcccchhhcchhhcccccHHHHHHHhhchhhhhccHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 4554443 2221 111 12234566788888888877654433333344444444555555554
No 455
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=39.48 E-value=84 Score=40.65 Aligned_cols=58 Identities=19% Similarity=0.194 Sum_probs=38.9
Q ss_pred HHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHH
Q 000139 532 GLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWET 591 (2062)
Q Consensus 532 GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~ 591 (2062)
+|+-+...+..+.-.|||-.+|.|||..++.++.+.+...+ .|++++..-.-..+...
T Consensus 183 ~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g--~~v~~fSlEm~~~~l~~ 240 (421)
T TIGR03600 183 KLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALREG--KPVLFFSLEMSAEQLGE 240 (421)
T ss_pred hHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCC--CcEEEEECCCCHHHHHH
Confidence 34555444444555689999999999999998877764333 47888875544444433
No 456
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=39.12 E-value=1.8e+02 Score=36.00 Aligned_cols=42 Identities=14% Similarity=0.185 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhhcCC---cEEEEcCCCChHHHHHHHHHHHHHHh
Q 000139 529 QHIGLDWLVTMYEKRL---NGILADEMGLGKTIMTIAMLAHLACE 570 (2062)
Q Consensus 529 Q~~GL~WLv~l~~~~~---gGILADEMGLGKTIQaIALLa~L~~~ 570 (2062)
|...+.-+...+..+. .-++.-+-|.|||..+.++...+.|.
T Consensus 9 ~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~ 53 (313)
T PRK05564 9 HENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGK 53 (313)
T ss_pred cHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 3334444444444332 23789999999999999998888764
No 457
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=39.12 E-value=2.2e+02 Score=35.88 Aligned_cols=50 Identities=22% Similarity=0.142 Sum_probs=30.0
Q ss_pred hccCeeEEEEcCccccCChhhH---HHHHHH---c----ccCceEEEEeccCCCCChHHH
Q 000139 643 KRKKWKYLILDEAHLIKNWKSQ---RWQTLL---N----FNSKRRILLTGTPLQNDLMEL 692 (2062)
Q Consensus 643 ~r~~W~lVILDEAH~IKN~~Sk---~~qaL~---~----L~a~~RLLLTGTPLQNsL~EL 692 (2062)
....+++||+|=+-+.-+.... ..+... . ......+.|.+|--+|.+...
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a 252 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQA 252 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHH
Confidence 3467899999999887654431 111111 1 123356889999666666654
No 458
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=38.70 E-value=2e+02 Score=34.27 Aligned_cols=39 Identities=13% Similarity=0.069 Sum_probs=28.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC
Q 000139 543 RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS 584 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtS 584 (2062)
+.-.+|.-+.|.|||..++.++..+.. .| .+++.|+..-
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~-~g--~~~~yi~~e~ 62 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQ-NG--YSVSYVSTQL 62 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh-CC--CcEEEEeCCC
Confidence 445578899999999999888887654 23 3667777543
No 459
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=38.60 E-value=1.1e+02 Score=39.45 Aligned_cols=44 Identities=32% Similarity=0.379 Sum_probs=25.4
Q ss_pred eeEEEEcCccccCChhhHHHHHHHcccCceEEEEeccCCCCChHHHH
Q 000139 647 WKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELW 693 (2062)
Q Consensus 647 W~lVILDEAH~IKN~~Sk~~qaL~~L~a~~RLLLTGTPLQNsL~ELw 693 (2062)
=-+|+|||.|++. +++.--.|-.+.. ..+.|-|+-..|-..+|-
T Consensus 105 ~tiLflDEIHRfn--K~QQD~lLp~vE~-G~iilIGATTENPsF~ln 148 (436)
T COG2256 105 RTILFLDEIHRFN--KAQQDALLPHVEN-GTIILIGATTENPSFELN 148 (436)
T ss_pred ceEEEEehhhhcC--hhhhhhhhhhhcC-CeEEEEeccCCCCCeeec
Confidence 4679999999995 2343333333334 445555555666554443
No 460
>PRK10867 signal recognition particle protein; Provisional
Probab=38.55 E-value=1.9e+02 Score=38.02 Aligned_cols=34 Identities=24% Similarity=0.189 Sum_probs=24.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEe
Q 000139 546 GILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVV 581 (2062)
Q Consensus 546 GILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVv 581 (2062)
.+++-..|.|||.+++-+..++....| .++++|+
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~~G--~kV~lV~ 136 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKKKK--KKVLLVA 136 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcC--CcEEEEE
Confidence 356788999999998888777765323 2556655
No 461
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=38.51 E-value=34 Score=36.86 Aligned_cols=58 Identities=26% Similarity=0.439 Sum_probs=43.5
Q ss_pred CCCCCChhhhHHHHHHHHhcCC----CchhHHHHhhccccCccccc----cccCChhhHHHHHHHHHHH
Q 000139 1659 SPDVWLPQEDAILCAVVHEYGP----NWSLVSDILYGMTASGYYRG----RYRHPVHCCERFRELIQRY 1719 (2062)
Q Consensus 1659 ~~~~w~~~ed~~l~~~v~~~g~----nw~l~~~~~~~~~~~~~~~~----~~r~~~~c~~r~~~~~~~~ 1719 (2062)
.+..||.+||..|...||+||= +|+.|-+.+ +....++- .-|+|....-|-..||.-.
T Consensus 48 ~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~I---r~~p~FrFDwf~kSRt~~el~rR~~tLi~~i 113 (118)
T PF09111_consen 48 KKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEI---RESPLFRFDWFFKSRTPQELQRRCNTLIKLI 113 (118)
T ss_dssp S-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHH---HH-CGGCT-HHHHTS-HHHHHHHHHHHHHHH
T ss_pred CCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHH---HhCCCcccchhcccCCHHHHHHHHHHHHHHH
Confidence 3678999999999999999997 799999987 44333443 3489999999988888654
No 462
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.45 E-value=1.8e+02 Score=39.92 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhhcCC---cEEEEcCCCChHHHHHHHHHHHHHHh
Q 000139 529 QHIGLDWLVTMYEKRL---NGILADEMGLGKTIMTIAMLAHLACE 570 (2062)
Q Consensus 529 Q~~GL~WLv~l~~~~~---gGILADEMGLGKTIQaIALLa~L~~~ 570 (2062)
|...+.-|...+..+. .-|+.-+.|.|||..+..+...+.|.
T Consensus 22 q~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~ 66 (614)
T PRK14971 22 QEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQ 66 (614)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4444444554444432 24789999999999888877777764
No 463
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=38.45 E-value=1.4e+02 Score=40.67 Aligned_cols=106 Identities=18% Similarity=0.241 Sum_probs=72.7
Q ss_pred hcccccCCccccccc--cchHHHHHHHHHHhhhCCCeEEEEeCch----HHHHHHHHHHHHcCCcEEEecCCCCHHHHHH
Q 000139 1050 RRQVYFPDRRLIQFD--CGKLQELAILLRKLKSDGHRALIFTQMT----KMLDILEEFISLYGYTYMRLDGSTQPEERQT 1123 (2062)
Q Consensus 1050 ~~~~~fPd~rLiq~d--SGKLq~L~~LLrkLks~GhKVLIFSQ~t----~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~ 1123 (2062)
.+.-..|-.||+|.| |||--+..--+-.....|..+.+...-- ...+-+..+|.-.|+++..|.|+++..+|.+
T Consensus 277 Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~ 356 (677)
T COG1200 277 DLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKE 356 (677)
T ss_pred hhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHH
Confidence 344456778999876 7886554444444456787887776532 2345678888888999999999999999999
Q ss_pred HHHHHhcCCCceEEEEecccc-ccccCcccCCEEE
Q 000139 1124 LMQRFNTNPKIFLFILSTRSG-GVGINLVGADTVI 1157 (2062)
Q Consensus 1124 lmerFN~D~~IfVfLLSTrAG-G~GLNLT~ADtVI 1157 (2062)
++++-.+ +.+.++ +-|.|. -..+++...--||
T Consensus 357 ~l~~l~~-G~~~iv-VGTHALiQd~V~F~~LgLVI 389 (677)
T COG1200 357 ILEQLAS-GEIDIV-VGTHALIQDKVEFHNLGLVI 389 (677)
T ss_pred HHHHHhC-CCCCEE-EEcchhhhcceeecceeEEE
Confidence 9999764 667774 555554 3444444444444
No 464
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=38.41 E-value=4.5e+02 Score=29.90 Aligned_cols=128 Identities=14% Similarity=0.189 Sum_probs=68.7
Q ss_pred cccchH-HHHHHHHHHhhh----CCCeEEEEeCchHHHHH----HHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCC
Q 000139 1063 FDCGKL-QELAILLRKLKS----DGHRALIFTQMTKMLDI----LEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPK 1133 (2062)
Q Consensus 1063 ~dSGKL-q~L~~LLrkLks----~GhKVLIFSQ~t~mLDI----Le~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~ 1133 (2062)
..+||- ..+..++..+.. .+.|+||.+.....+.- +..+....++....+.|+++...+..... .+
T Consensus 45 TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 119 (203)
T cd00268 45 TGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK-----RG 119 (203)
T ss_pred CCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc-----CC
Confidence 367885 346666666654 35689999987765543 44455556888889999988655543332 24
Q ss_pred ceEEEEeccc----c-ccccCcccCCEEEEecCCC--ChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHH
Q 000139 1134 IFLFILSTRS----G-GVGINLVGADTVIFYDSDW--NPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENI 1199 (2062)
Q Consensus 1134 IfVfLLSTrA----G-G~GLNLT~ADtVIfyD~dW--NPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~I 1199 (2062)
..|++.+... . ..-+++...+.||+=+.+. +..+......-..++.+ .+..++..-|+-..+
T Consensus 120 ~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~----~~~~~~~SAT~~~~~ 188 (203)
T cd00268 120 PHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPK----DRQTLLFSATMPKEV 188 (203)
T ss_pred CCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHHHHhCCc----ccEEEEEeccCCHHH
Confidence 4565555321 0 1115555566655422221 22223333333334432 444455555554444
No 465
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=38.40 E-value=1.3e+02 Score=35.49 Aligned_cols=51 Identities=6% Similarity=0.073 Sum_probs=34.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHH
Q 000139 543 RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKW 596 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw 596 (2062)
+.-.+++-..|.|||+.+..++..... . .+++++|.=-....+....+..+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~-~--g~~~~y~~~e~~~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALK-Q--GKKVYVITTENTSKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHh-C--CCEEEEEEcCCCHHHHHHHHHHC
Confidence 334577889999999999998876543 2 34777777555555555555543
No 466
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=38.23 E-value=1.9e+02 Score=35.87 Aligned_cols=47 Identities=19% Similarity=0.259 Sum_probs=35.4
Q ss_pred CCcHHHHHHHHHHHHHhhcCC--cEEEEcCCCChHHHHHHHHHHHHHHhc
Q 000139 524 PLREYQHIGLDWLVTMYEKRL--NGILADEMGLGKTIMTIAMLAHLACEK 571 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~--gGILADEMGLGKTIQaIALLa~L~~~~ 571 (2062)
.|...|-..+..|.+.+.++. .++|... |.||+..+..|...+.|..
T Consensus 2 ~l~~~q~~~~~~L~~~~~~~rl~hAyLf~G-~~G~~~~A~~~A~~llC~~ 50 (290)
T PRK07276 2 DLKQKQPKVFQRFQTILEQDRLNHAYLFSG-DFASFEMALFLAQSLFCEQ 50 (290)
T ss_pred cHHHHHHHHHHHHHHHHHcCCcceeeeeeC-CccHHHHHHHHHHHHcCCC
Confidence 366778888888888876654 3445433 6899999999999998864
No 467
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=37.88 E-value=1.4e+02 Score=37.25 Aligned_cols=132 Identities=15% Similarity=0.114 Sum_probs=70.1
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEE--ecCCcH--HHHHHHHHHHCC
Q 000139 523 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIV--VPTSVM--LNWETEFLKWCP 598 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIV--vPtSLL--~QW~~Efkkw~P 598 (2062)
+++.+.|..- |....+.+.+.|++-++|.|||....+++..... ..+.+.| .|--.+ .||...+-+
T Consensus 126 gt~~~~~~ay---L~~~ie~~~siii~G~t~sGKTt~lnall~~Ip~----~~rivtIEdt~E~~~~~~n~~~l~~r--- 195 (312)
T COG0630 126 GTISPEQAAY---LWLAIEARKSIIICGGTASGKTTLLNALLDFIPP----EERIVTIEDTPELKLPHENWVQLVTR--- 195 (312)
T ss_pred CCCCHHHHHH---HHHHHHcCCcEEEECCCCCCHHHHHHHHHHhCCc----hhcEEEEeccccccCCCCCEEEEEec---
Confidence 5566666555 3334567889999999999999877776654422 1122222 111111 122221110
Q ss_pred CCeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHcccCceEE
Q 000139 599 AFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRI 678 (2062)
Q Consensus 599 ~lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L~a~~RL 678 (2062)
.. .....=|+.+..+ ..-.+.+.+++|++|.+- -..+-.++.+.+.+
T Consensus 196 ---------~~-------------~~~~~~v~~~dll----~aalR~rPd~IivgEvrg-----~e~~~~~~a~~tGh-- 242 (312)
T COG0630 196 ---------EG-------------ESGSSEVSLEDLL----RAALRQRPDYIIVGELRG-----REAFVLFQAMQTGH-- 242 (312)
T ss_pred ---------CC-------------CCCccccCHHHHH----HHHHhcCCCeEEEeeeec-----HHHHHHHHHHhcCC--
Confidence 00 0000112222222 233457899999999973 22344555556666
Q ss_pred EEeccCCCCChHHHHHHHH
Q 000139 679 LLTGTPLQNDLMELWSLMH 697 (2062)
Q Consensus 679 LLTGTPLQNsL~ELwSLL~ 697 (2062)
.--.|....+...+..-|.
T Consensus 243 ~~isT~ha~s~~~~~~rl~ 261 (312)
T COG0630 243 GTISTIHADSPELVLDRLT 261 (312)
T ss_pred CceeEEecCCHHHHHHHHh
Confidence 4445777777777655443
No 468
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=37.43 E-value=22 Score=34.47 Aligned_cols=19 Identities=26% Similarity=0.705 Sum_probs=17.7
Q ss_pred HHHHHHHHhcCCCchhHHH
Q 000139 1669 AILCAVVHEYGPNWSLVSD 1687 (2062)
Q Consensus 1669 ~~l~~~v~~~g~nw~l~~~ 1687 (2062)
++|..|++-||.||.||-|
T Consensus 30 ~vl~~LL~lY~~nW~lIEe 48 (65)
T PF10440_consen 30 PVLKNLLKLYDGNWELIEE 48 (65)
T ss_pred HHHHHHHHHHcCCchhhhc
Confidence 7899999999999999987
No 469
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=37.22 E-value=62 Score=39.18 Aligned_cols=49 Identities=12% Similarity=0.134 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEe
Q 000139 527 EYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVV 581 (2062)
Q Consensus 527 pYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVv 581 (2062)
++...-+..+......+.+.+|..+.|.|||..+-++...+ | .|++.|+
T Consensus 5 ~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~l----g--~~~~~i~ 53 (262)
T TIGR02640 5 DAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR----D--RPVMLIN 53 (262)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHh----C--CCEEEEe
Confidence 45555666666666678888999999999999887765422 2 3666664
No 470
>PRK06321 replicative DNA helicase; Provisional
Probab=36.41 E-value=1.4e+02 Score=39.61 Aligned_cols=60 Identities=17% Similarity=0.168 Sum_probs=40.3
Q ss_pred HHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHH
Q 000139 532 GLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEF 593 (2062)
Q Consensus 532 GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Ef 593 (2062)
.|+-+...+..+.=.|||--+|.|||.-++.++.+.+...+ .|++++..----.++...+
T Consensus 215 ~LD~~t~Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~~g--~~v~~fSLEMs~~ql~~Rl 274 (472)
T PRK06321 215 DLDKMINGFSPSNLMILAARPAMGKTALALNIAENFCFQNR--LPVGIFSLEMTVDQLIHRI 274 (472)
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcC--CeEEEEeccCCHHHHHHHH
Confidence 35555544444444588999999999999887776654333 4788887665555655543
No 471
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=36.20 E-value=64 Score=42.95 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=21.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHH
Q 000139 543 RLNGILADEMGLGKTIMTIAMLAHLA 568 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIALLa~L~ 568 (2062)
..|.+|.-.+|.|||..+-++...+.
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhc
Confidence 45778899999999998877776653
No 472
>PRK08006 replicative DNA helicase; Provisional
Probab=36.13 E-value=1.8e+02 Score=38.62 Aligned_cols=60 Identities=17% Similarity=0.069 Sum_probs=40.7
Q ss_pred HHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHH
Q 000139 532 GLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEF 593 (2062)
Q Consensus 532 GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Ef 593 (2062)
.|+-+...+..+.-.|||--+|+|||.-++.++...+...+ .|++++..---..++...+
T Consensus 213 ~LD~~~~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~~g--~~V~~fSlEM~~~ql~~Rl 272 (471)
T PRK08006 213 DLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQD--KPVLIFSLEMPGEQIMMRM 272 (471)
T ss_pred HHHHhhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcC--CeEEEEeccCCHHHHHHHH
Confidence 34444444555555689999999999999888877664332 4788887665555555444
No 473
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=35.79 E-value=45 Score=43.06 Aligned_cols=38 Identities=24% Similarity=0.264 Sum_probs=25.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcH
Q 000139 543 RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVM 586 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL 586 (2062)
+.|.+|.-..|.|||..+-++...+ ..+++.|.+..++
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~~l------~~~fi~i~~s~l~ 216 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAHHT------TATFIRVVGSEFV 216 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhc------CCCEEEEehHHHH
Confidence 5677899999999999886665432 1255555554443
No 474
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=35.70 E-value=2.5e+02 Score=32.84 Aligned_cols=49 Identities=12% Similarity=-0.039 Sum_probs=34.5
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHH
Q 000139 545 NGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKW 596 (2062)
Q Consensus 545 gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw 596 (2062)
-.+|+-+.|.|||..++.++...+.. ..++++|.-..-..+-...+..+
T Consensus 18 ~~li~G~~G~GKt~~~~~~~~~~~~~---g~~~~y~s~e~~~~~l~~~~~~~ 66 (224)
T TIGR03880 18 VIVVIGEYGTGKTTFSLQFLYQGLKN---GEKAMYISLEEREERILGYAKSK 66 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECCCCHHHHHHHHHHc
Confidence 34678889999999998887765432 25788888766665555555544
No 475
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=35.65 E-value=2.1e+02 Score=38.30 Aligned_cols=132 Identities=15% Similarity=0.089 Sum_probs=73.5
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCc------EEEEcCCCChHHHHHHHHHHHHHHhcCCC-CcEEEEecCC-cHHHHHHHHH
Q 000139 523 FPLREYQHIGLDWLVTMYEKRLN------GILADEMGLGKTIMTIAMLAHLACEKGIW-GPHLIVVPTS-VMLNWETEFL 594 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~~g------GILADEMGLGKTIQaIALLa~L~~~~g~~-Gp~LIVvPtS-LL~QW~~Efk 594 (2062)
..|-|||+-.+.-|.-.|.+..| ++|--.=|=|||-.+.+++.+........ -.++|++|+- ...+=-.+++
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar 139 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPAR 139 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHH
Confidence 56899999999888766665544 36777789999988776666543322222 3567777763 2223333333
Q ss_pred HHCCCCeEEEEeCChhhHHhhhhccCCCCCceEEEEehh-------hhhhchhhhhccCeeEEEEcCccccCChhhHHHH
Q 000139 595 KWCPAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYR-------LIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQ 667 (2062)
Q Consensus 595 kw~P~lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe-------~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~q 667 (2062)
..+-..+ .-+...+ ..-+-.+++|. .+..+.......+...+|+||-|..++.. ..+.
T Consensus 140 ~mv~~~~--------~l~~~~~------~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~-~~~~ 204 (546)
T COG4626 140 DMVKRDD--------DLRDLCN------VQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE-DMYS 204 (546)
T ss_pred HHHHhCc--------chhhhhc------cccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH-HHHH
Confidence 2221111 0010000 11112122222 22334455666788999999999999876 3333
Q ss_pred HH
Q 000139 668 TL 669 (2062)
Q Consensus 668 aL 669 (2062)
.+
T Consensus 205 ~~ 206 (546)
T COG4626 205 EA 206 (546)
T ss_pred HH
Confidence 33
No 476
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=35.62 E-value=2.4e+02 Score=36.18 Aligned_cols=48 Identities=23% Similarity=0.210 Sum_probs=34.8
Q ss_pred CCCcHHHHHHHHHHHHHh-h--cCCcEEEEcCCCChHHHHHHHHHHHHHHh
Q 000139 523 FPLREYQHIGLDWLVTMY-E--KRLNGILADEMGLGKTIMTIAMLAHLACE 570 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~-~--~~~gGILADEMGLGKTIQaIALLa~L~~~ 570 (2062)
.+-|+-|..-+...+.-. . .+.|.++.-.+|.|||.++--++..+...
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~ 69 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEES 69 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhh
Confidence 445899988887554333 2 23368889999999999988777777554
No 477
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=35.53 E-value=3.4e+02 Score=33.39 Aligned_cols=126 Identities=14% Similarity=0.132 Sum_probs=62.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC----CcHHHHHHHHHHHCCCCeEEEEeCChhhHHhhhhcc
Q 000139 544 LNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT----SVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGW 619 (2062)
Q Consensus 544 ~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt----SLL~QW~~Efkkw~P~lkVl~y~Gs~kerk~~r~gw 619 (2062)
....|.-..|.|||.....+...+.. .+ ..+.+|.-. ..+.||...... +.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~-~~--~~v~~i~~D~~ri~~~~ql~~~~~~----~~------------------ 130 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHG-KK--KTVGFITTDHSRIGTVQQLQDYVKT----IG------------------ 130 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHH-cC--CeEEEEecCCCCHHHHHHHHHHhhh----cC------------------
Confidence 34466777999999877666555432 22 345555432 245556543222 11
Q ss_pred CCCCCceEEE-Eehhhhhhchhhhhc-cCeeEEEEcCccccCChhhHH---HHHHHcccC-ceEEEEeccCCCCChHHHH
Q 000139 620 LKPNSFHVCI-TTYRLIIQDSKVFKR-KKWKYLILDEAHLIKNWKSQR---WQTLLNFNS-KRRILLTGTPLQNDLMELW 693 (2062)
Q Consensus 620 ~k~~~fdVVI-TSYe~l~~d~~~L~r-~~W~lVILDEAH~IKN~~Sk~---~qaL~~L~a-~~RLLLTGTPLQNsL~ELw 693 (2062)
+.+.. .+...+......+.. .++++||+|-+=+.-+..... ...+..... ...|.|++|--.+.+.+..
T Consensus 131 -----~~~~~~~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~ 205 (270)
T PRK06731 131 -----FEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEII 205 (270)
T ss_pred -----ceEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHH
Confidence 11111 112222222222332 358999999986653222111 111222222 2356688887666666655
Q ss_pred HHHHHh
Q 000139 694 SLMHFL 699 (2062)
Q Consensus 694 SLL~FL 699 (2062)
..++-+
T Consensus 206 ~~f~~~ 211 (270)
T PRK06731 206 TNFKDI 211 (270)
T ss_pred HHhCCC
Confidence 544443
No 478
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=34.73 E-value=53 Score=45.67 Aligned_cols=41 Identities=20% Similarity=0.327 Sum_probs=26.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHH
Q 000139 543 RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNW 589 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW 589 (2062)
..|.+|.-..|.|||..+-++...+. .+++.|-+..++..|
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~------~~fi~v~~~~l~~~~ 527 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESG------ANFIAVRGPEILSKW 527 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcC------CCEEEEehHHHhhcc
Confidence 34567889999999988766654431 256666555454443
No 479
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=34.35 E-value=92 Score=43.53 Aligned_cols=26 Identities=27% Similarity=0.463 Sum_probs=20.4
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHH
Q 000139 542 KRLNGILADEMGLGKTIMTIAMLAHL 567 (2062)
Q Consensus 542 ~~~gGILADEMGLGKTIQaIALLa~L 567 (2062)
...|.||.-+.|.|||..+-++....
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 35678999999999999887665443
No 480
>CHL00206 ycf2 Ycf2; Provisional
Probab=34.32 E-value=72 Score=48.03 Aligned_cols=42 Identities=12% Similarity=0.196 Sum_probs=29.1
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHH
Q 000139 542 KRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNW 589 (2062)
Q Consensus 542 ~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW 589 (2062)
...|.+|.-.+|.|||+.|=|+.... +. |++-|....++..|
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es----~V--PFIsISgs~fl~~~ 1670 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS----YV--PFITVFLNKFLDNK 1670 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc----CC--ceEEEEHHHHhhcc
Confidence 35577889999999998877665543 22 66666666666655
No 481
>PHA02542 41 41 helicase; Provisional
Probab=34.09 E-value=84 Score=41.55 Aligned_cols=57 Identities=14% Similarity=0.073 Sum_probs=36.1
Q ss_pred HHHHHH-HHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHH
Q 000139 532 GLDWLV-TMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWET 591 (2062)
Q Consensus 532 GL~WLv-~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~ 591 (2062)
+|+-|. ..+..+.-.|||--+|+|||..++.++.+.+. .| .++|++.----..++..
T Consensus 178 ~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a~-~g--~~Vl~fSLEM~~~ql~~ 235 (473)
T PHA02542 178 ILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYLQ-QG--YNVLYISMEMAEEVIAK 235 (473)
T ss_pred HHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHHh-cC--CcEEEEeccCCHHHHHH
Confidence 344444 23333444689999999999999988877753 32 47888864333344433
No 482
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=33.78 E-value=2e+02 Score=41.33 Aligned_cols=95 Identities=15% Similarity=0.125 Sum_probs=66.4
Q ss_pred cccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHH----HcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEE
Q 000139 1063 FDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFIS----LYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFI 1138 (2062)
Q Consensus 1063 ~dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~----~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfL 1138 (2062)
..+||-.+....+-.....|.+|+|.+..+....-....++ ..+++...+.|.++..++..+++.+.. +.+.|+|
T Consensus 481 TGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~-g~~dIVI 559 (926)
T TIGR00580 481 VGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELAS-GKIDILI 559 (926)
T ss_pred CCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHc-CCceEEE
Confidence 45889876655444444567899999999887765555443 347788889999998889888888875 4566655
Q ss_pred EeccccccccCcccCCEEEE
Q 000139 1139 LSTRSGGVGINLVGADTVIF 1158 (2062)
Q Consensus 1139 LSTrAGG~GLNLT~ADtVIf 1158 (2062)
.+.+.....+.+.....||+
T Consensus 560 GTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 560 GTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred chHHHhhCCCCcccCCEEEe
Confidence 55544444566666666555
No 483
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.76 E-value=2.3e+02 Score=35.94 Aligned_cols=41 Identities=17% Similarity=0.146 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhcCC---cEEEEcCCCChHHHHHHHHHHHHHH
Q 000139 529 QHIGLDWLVTMYEKRL---NGILADEMGLGKTIMTIAMLAHLAC 569 (2062)
Q Consensus 529 Q~~GL~WLv~l~~~~~---gGILADEMGLGKTIQaIALLa~L~~ 569 (2062)
|...+.-+.+....+. +-+|.-+.|.|||..+-++...+.+
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 22 QSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3344444444444332 4578999999999888877666544
No 484
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=33.74 E-value=2.2e+02 Score=44.08 Aligned_cols=150 Identities=17% Similarity=0.182 Sum_probs=79.9
Q ss_pred CCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHH-HHHHHHHHCCCC
Q 000139 522 KFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLN-WETEFLKWCPAF 600 (2062)
Q Consensus 522 k~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~Q-W~~Efkkw~P~l 600 (2062)
...|-+-|+.++.-++. ....-.||---.|.|||-++-+++..+ ...| ..+++++|+....+ ...+...-.
T Consensus 427 ~~~Ls~~Q~~Av~~il~--s~~~v~ii~G~aGTGKTt~l~~l~~~~-~~~G--~~V~~lAPTgrAA~~L~e~~g~~A--- 498 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFT--STKRFIIINGFGGTGSTEIAQLLLHLA-SEQG--YEIQIITAGSLSAQELRQKIPRLA--- 498 (1960)
T ss_pred cCCCCHHHHHHHHHHHh--CCCCeEEEEECCCCCHHHHHHHHHHHH-HhcC--CeEEEEeCCHHHHHHHHHHhcchh---
Confidence 45789999999987765 223445677779999997766655443 3333 47888899975443 333321100
Q ss_pred eEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHc-c-cCceEE
Q 000139 601 KILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLN-F-NSKRRI 678 (2062)
Q Consensus 601 kVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~-L-~a~~RL 678 (2062)
.++ ..+.. +.. .....-|.+. +......+ ..-++||||||-.+- +.....|.. . ....++
T Consensus 499 --~Ti------~~~l~--~l~--~~~~~~tv~~-fl~~~~~l--~~~~vlIVDEAsMl~---~~~~~~Ll~~a~~~garv 560 (1960)
T TIGR02760 499 --STF------ITWVK--NLF--NDDQDHTVQG-LLDKSSPF--SNKDIFVVDEANKLS---NNELLKLIDKAEQHNSKL 560 (1960)
T ss_pred --hhH------HHHHH--hhc--ccccchhHHH-hhcccCCC--CCCCEEEEECCCCCC---HHHHHHHHHHHhhcCCEE
Confidence 000 00000 000 0000001011 11111111 245899999999985 344444443 3 466889
Q ss_pred EEeccCCCCChHHHHHHHH
Q 000139 679 LLTGTPLQNDLMELWSLMH 697 (2062)
Q Consensus 679 LLTGTPLQNsL~ELwSLL~ 697 (2062)
+|-|=+-|..-.+-=+.|.
T Consensus 561 VlvGD~~QL~sV~aG~~f~ 579 (1960)
T TIGR02760 561 ILLNDSAQRQGMSAGSAID 579 (1960)
T ss_pred EEEcChhhcCccccchHHH
Confidence 9999887765433333333
No 485
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=33.60 E-value=1.6e+02 Score=28.02 Aligned_cols=57 Identities=14% Similarity=0.230 Sum_probs=41.0
Q ss_pred eEEEEe-CchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEe
Q 000139 1084 RALIFT-QMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILS 1140 (2062)
Q Consensus 1084 KVLIFS-Q~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLS 1140 (2062)
||.||+ .+-..-.....+|+.+|+.|..++-....+.++.+.+..+....+.++++.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~ 58 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIG 58 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEEC
Confidence 466776 445667778888999999999998888778888888777654244444443
No 486
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=33.41 E-value=1.2e+02 Score=35.85 Aligned_cols=65 Identities=18% Similarity=0.190 Sum_probs=35.0
Q ss_pred HHHHHHcCCcEEEecCCC-------CHHHHH---H---HHHHHhcCCCceEEEEe--ccc-ccc-------------ccC
Q 000139 1099 EEFISLYGYTYMRLDGST-------QPEERQ---T---LMQRFNTNPKIFLFILS--TRS-GGV-------------GIN 1149 (2062)
Q Consensus 1099 e~~L~~~Gi~y~RLDGsT-------s~eqRq---~---lmerFN~D~~IfVfLLS--TrA-GG~-------------GLN 1149 (2062)
..+...++..++.||.=+ ....++ . .+.+|...-++.|++++ ++. ++. |.=
T Consensus 116 ~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~la~~~~~~ii~~~q~~r~~~~~~~~~~~~~~~~gS~~i 195 (242)
T cd00984 116 RRLKKEHGLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLLAKELNVPVIALSQLSRGVESRADKRPMLSDLRESGSI 195 (242)
T ss_pred HHHHHhcCCCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEecccChhhhccCCCCCCHHHHhhhccc
Confidence 333345588888888621 112222 2 23344445677777776 221 111 111
Q ss_pred cccCCEEEEecCCC
Q 000139 1150 LVGADTVIFYDSDW 1163 (2062)
Q Consensus 1150 LT~ADtVIfyD~dW 1163 (2062)
-+.||.||+++.+.
T Consensus 196 ~~~aD~vi~l~~~~ 209 (242)
T cd00984 196 EQDADVVMFLYRDE 209 (242)
T ss_pred ccCCCEEEEEeccc
Confidence 35799999998765
No 487
>PRK10689 transcription-repair coupling factor; Provisional
Probab=33.33 E-value=2.3e+02 Score=41.72 Aligned_cols=103 Identities=11% Similarity=0.054 Sum_probs=68.2
Q ss_pred cCCccccc--cccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHH----HHcCCcEEEecCCCCHHHHHHHHHHH
Q 000139 1055 FPDRRLIQ--FDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFI----SLYGYTYMRLDGSTQPEERQTLMQRF 1128 (2062)
Q Consensus 1055 fPd~rLiq--~dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L----~~~Gi~y~RLDGsTs~eqRq~lmerF 1128 (2062)
.|..++++ ..+||-.+....+......|.+|||.+..+....-+...+ ...++++..+.|.++..++..++...
T Consensus 620 ~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l 699 (1147)
T PRK10689 620 LAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEA 699 (1147)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHH
Confidence 34455654 4588987655444334456889999999887755444443 33456777889999998998888887
Q ss_pred hcCCCceEEEEeccccccccCcccCCEEEE
Q 000139 1129 NTNPKIFLFILSTRSGGVGINLVGADTVIF 1158 (2062)
Q Consensus 1129 N~D~~IfVfLLSTrAGG~GLNLT~ADtVIf 1158 (2062)
.. +.+.|+|.+.+....++++.....||+
T Consensus 700 ~~-g~~dIVVgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 700 AE-GKIDILIGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred Hh-CCCCEEEECHHHHhCCCCHhhCCEEEE
Confidence 64 456676666554444566666666655
No 488
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=33.13 E-value=2e+02 Score=31.79 Aligned_cols=85 Identities=12% Similarity=0.183 Sum_probs=57.0
Q ss_pred eEEEEeCchHHHHHHHHHHHHcCCc--EEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEEEecC
Q 000139 1084 RALIFTQMTKMLDILEEFISLYGYT--YMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDS 1161 (2062)
Q Consensus 1084 KVLIFSQ~t~mLDILe~~L~~~Gi~--y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIfyD~ 1161 (2062)
.|=|+||.-.+...|-..+..+|+. ++.=.|+...-.=.++++-|..|+.+.+++ ++++.
T Consensus 3 ~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~dv~~~d~l~~~~~D~~t~~I~------------------ly~E~ 64 (138)
T PF13607_consen 3 GVALISQSGALGTAILDWAQDRGIGFSYVVSVGNEADVDFADLLEYLAEDPDTRVIV------------------LYLEG 64 (138)
T ss_dssp SEEEEES-HHHHHHHHHHHHHTT-EESEEEE-TT-SSS-HHHHHHHHCT-SS--EEE------------------EEES-
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCeeEEEEeCccccCCHHHHHHHHhcCCCCCEEE------------------EEccC
Confidence 4678999999999999999887665 455566655556778999999999999864 55666
Q ss_pred CCChhhHHHHHHhhhccCCcCcEEEEEE
Q 000139 1162 DWNPAMDQQAQDRCHRIGQTREVHIYRL 1189 (2062)
Q Consensus 1162 dWNPa~d~QA~gRahRIGQTRdV~VYRL 1189 (2062)
-=||....++.-|+.|- |||.+|+-
T Consensus 65 ~~d~~~f~~~~~~a~~~---KPVv~lk~ 89 (138)
T PF13607_consen 65 IGDGRRFLEAARRAARR---KPVVVLKA 89 (138)
T ss_dssp -S-HHHHHHHHHHHCCC---S-EEEEE-
T ss_pred CCCHHHHHHHHHHHhcC---CCEEEEeC
Confidence 66888888888888764 99998764
No 489
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=33.08 E-value=73 Score=32.21 Aligned_cols=54 Identities=15% Similarity=0.330 Sum_probs=42.4
Q ss_pred CCChhhhHHHHHHHHhc-------C-C-----CchhHHHHhhccccCccccccccCChhhHHHHHHHHHHHHH
Q 000139 1662 VWLPQEDAILCAVVHEY-------G-P-----NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYIL 1721 (2062)
Q Consensus 1662 ~w~~~ed~~l~~~v~~~-------g-~-----nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~ 1721 (2062)
.|++..+++|+.+..+. + . .|.-|...|+. .-|......||+-||+.|-..|..
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~------~~~~~~t~~qlknk~~~lk~~y~~ 67 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNE------KTGLNYTKKQLKNKWKTLKKDYRI 67 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHH------HhCCcccHHHHHHHHHHHHHHHHH
Confidence 59999999999888665 1 1 38899998855 334667789999999999888764
No 490
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=32.96 E-value=52 Score=42.61 Aligned_cols=45 Identities=20% Similarity=0.225 Sum_probs=34.1
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHH
Q 000139 545 NGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLK 595 (2062)
Q Consensus 545 gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkk 595 (2062)
|-+|+-..|.|||+.+.|+...... .+.-|.|.+|...|.-|-.+
T Consensus 188 glLLfGPpgtGKtmL~~aiAsE~~a------tff~iSassLtsK~~Ge~eK 232 (428)
T KOG0740|consen 188 GLLLFGPPGTGKTMLAKAIATESGA------TFFNISASSLTSKYVGESEK 232 (428)
T ss_pred hhheecCCCCchHHHHHHHHhhhcc------eEeeccHHHhhhhccChHHH
Confidence 4468999999999998887765432 46677888898888766544
No 491
>PHA00350 putative assembly protein
Probab=32.79 E-value=1.2e+02 Score=39.39 Aligned_cols=19 Identities=11% Similarity=0.065 Sum_probs=14.0
Q ss_pred EEEcCCCChHHHHHHHHHH
Q 000139 547 ILADEMGLGKTIMTIAMLA 565 (2062)
Q Consensus 547 ILADEMGLGKTIQaIALLa 565 (2062)
|+---.|.|||+-++....
T Consensus 5 l~tG~pGSGKT~~aV~~~i 23 (399)
T PHA00350 5 AIVGRPGSYKSYEAVVYHI 23 (399)
T ss_pred EEecCCCCchhHHHHHHHH
Confidence 3444589999999998533
No 492
>COG4646 DNA methylase [Transcription / DNA replication, recombination, and repair]
Probab=32.53 E-value=26 Score=44.76 Aligned_cols=43 Identities=28% Similarity=0.549 Sum_probs=34.5
Q ss_pred cCceEEEEeccCCCCChHHHHHHHHHhCCCCCC--ChHHHHHHhc
Q 000139 673 NSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQ--SHQEFKDWFC 715 (2062)
Q Consensus 673 ~a~~RLLLTGTPLQNsL~ELwSLL~FL~P~iF~--s~~eFkewFs 715 (2062)
+.++..|+||||+.|.+.|++++-++|.++.+- ....|..|.+
T Consensus 472 ~G~~L~l~sgTpi~ntlgem~~vqRyl~~~al~ergl~~fd~was 516 (637)
T COG4646 472 PGRALVLASGTPITNTLGEMFSVQRYLGAGALYERGLHEFDAWAS 516 (637)
T ss_pred CCCeEEecCCCchhhhHHhhhhhhhhcCccHHHHhhhhhhhhHHH
Confidence 567889999999999999999999999888653 3345666553
No 493
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=32.49 E-value=53 Score=42.26 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=21.6
Q ss_pred HHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHH
Q 000139 532 GLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLAC 569 (2062)
Q Consensus 532 GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~ 569 (2062)
.++.|.-.-...+++|+| ..|.|||..+-.+......
T Consensus 159 vID~l~PIGkGQR~lIvg-ppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 159 IIDLIAPIGKGQRGLIVA-PPKAGKTVLLQNIANSITT 195 (416)
T ss_pred eeeeecccccCceEEEeC-CCCCChhHHHHHHHHHHHh
Confidence 444554443434445555 5999999776665554443
No 494
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=32.39 E-value=1.5e+02 Score=32.73 Aligned_cols=79 Identities=14% Similarity=0.080 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHc----CCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000139 1068 LQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLY----GYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1143 (2062)
Q Consensus 1068 Lq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~----Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrA 1143 (2062)
.+.+..|+.+....|+||+|+++-...+..|-..|=.. -+.+.+.+.... ....|+| ++..
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~~~--------------~~~PV~i-~~~~ 79 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEPPA--------------ARQPVLI-TWDQ 79 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-SST--------------T--SEEE-E-TT
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCCCC--------------CCCeEEE-ecCc
Confidence 58999999999999999999999999999999999332 234444333322 1223544 3322
Q ss_pred cccccCcccCCEEEEecCCC
Q 000139 1144 GGVGINLVGADTVIFYDSDW 1163 (2062)
Q Consensus 1144 GG~GLNLT~ADtVIfyD~dW 1163 (2062)
. +-....++.+|++++.+
T Consensus 80 ~--~~~~~~~~vLinL~~~~ 97 (137)
T PF04364_consen 80 E--ANPNNHADVLINLSGEV 97 (137)
T ss_dssp S------S--SEEEE--SS-
T ss_pred c--cCCCCCCCEEEECCCCC
Confidence 1 12344599999999887
No 495
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=32.20 E-value=1.7e+02 Score=45.39 Aligned_cols=133 Identities=17% Similarity=0.118 Sum_probs=70.7
Q ss_pred CCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCC-CCcEEEEecCCcHHHHHHHHHHHCCCC
Q 000139 522 KFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGI-WGPHLIVVPTSVMLNWETEFLKWCPAF 600 (2062)
Q Consensus 522 k~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~-~Gp~LIVvPtSLL~QW~~Efkkw~P~l 600 (2062)
...|-+-|+.++..++. ......+|---.|.|||.+..+++..+...... ...++.++|+.-.. .+|+.- ++
T Consensus 1017 ~~~Lt~~Q~~Ai~~il~--~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa---~~L~~~--g~ 1089 (1960)
T TIGR02760 1017 LERLTHGQKQAIHLIIS--TKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAV---GELKSA--GV 1089 (1960)
T ss_pred cCCCCHHHHHHHHHHHh--CCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHH---HHHHhc--CC
Confidence 35799999999988765 223344666679999998885544433221111 12566678885443 233221 11
Q ss_pred eEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHcc-cCceEEE
Q 000139 601 KILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNF-NSKRRIL 679 (2062)
Q Consensus 601 kVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L-~a~~RLL 679 (2062)
...++ ..|.. ......... ....-.+||||||-.+.+.. ..+.+... .+..||+
T Consensus 1090 ~a~Ti-----------~s~l~---------~~~~~~~~~---~~~~~~v~ivDEasMv~~~~--~~~l~~~~~~~~ak~v 1144 (1960)
T TIGR02760 1090 QAQTL-----------DSFLT---------DISLYRNSG---GDFRNTLFILDESSMVSNFQ--LTHATELVQKSGSRAV 1144 (1960)
T ss_pred chHhH-----------HHHhc---------CcccccccC---CCCcccEEEEEccccccHHH--HHHHHHhccCCCCEEE
Confidence 11000 00000 000000000 02345799999999996533 22233222 4557899
Q ss_pred EeccCCC
Q 000139 680 LTGTPLQ 686 (2062)
Q Consensus 680 LTGTPLQ 686 (2062)
|.|=|-|
T Consensus 1145 lvGD~~Q 1151 (1960)
T TIGR02760 1145 SLGDIAQ 1151 (1960)
T ss_pred EeCChhh
Confidence 9998766
No 496
>PRK05973 replicative DNA helicase; Provisional
Probab=32.07 E-value=62 Score=38.92 Aligned_cols=42 Identities=14% Similarity=0.160 Sum_probs=30.4
Q ss_pred HhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC
Q 000139 539 MYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT 583 (2062)
Q Consensus 539 l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt 583 (2062)
.+..+.-.+|+-..|.|||+.++-++...+. .| .+++++.--
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~-~G--e~vlyfSlE 101 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMK-SG--RTGVFFTLE 101 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh-cC--CeEEEEEEe
Confidence 3444555688999999999999998887654 23 467777643
No 497
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=31.82 E-value=1.8e+02 Score=37.78 Aligned_cols=86 Identities=13% Similarity=0.166 Sum_probs=61.7
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCeEEEEeCChhhHHhhhhccCCCCCce
Q 000139 547 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNSFH 626 (2062)
Q Consensus 547 ILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw~P~lkVl~y~Gs~kerk~~r~gw~k~~~fd 626 (2062)
+++-|.|.||+-.-+-+++.++. .+++|.|+=---+.||.....|..- +..+
T Consensus 97 LIgGdPGIGKSTLLLQva~~lA~----~~~vLYVsGEES~~QiklRA~RL~~------------------------~~~~ 148 (456)
T COG1066 97 LIGGDPGIGKSTLLLQVAARLAK----RGKVLYVSGEESLQQIKLRADRLGL------------------------PTNN 148 (456)
T ss_pred EEccCCCCCHHHHHHHHHHHHHh----cCcEEEEeCCcCHHHHHHHHHHhCC------------------------Cccc
Confidence 67999999999665555555544 2489999988888999888777521 1134
Q ss_pred EEEEehhhhhhchhhhhccCeeEEEEcCccccCC
Q 000139 627 VCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKN 660 (2062)
Q Consensus 627 VVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN 660 (2062)
+.+..+..+..-...+...++++||+|=.|.+-+
T Consensus 149 l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s 182 (456)
T COG1066 149 LYLLAETNLEDIIAELEQEKPDLVVIDSIQTLYS 182 (456)
T ss_pred eEEehhcCHHHHHHHHHhcCCCEEEEeccceeec
Confidence 5555555555556667778999999998877643
No 498
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=30.70 E-value=85 Score=42.05 Aligned_cols=51 Identities=25% Similarity=0.310 Sum_probs=36.7
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHHHHhcC---CCCcEEEEecCCcHHHHHH
Q 000139 541 EKRLNGILADEMGLGKTIMTIAMLAHLACEKG---IWGPHLIVVPTSVMLNWET 591 (2062)
Q Consensus 541 ~~~~gGILADEMGLGKTIQaIALLa~L~~~~g---~~Gp~LIVvPtSLL~QW~~ 591 (2062)
.++.--|+---.|.|||-.|+--+++|..... ..+|+||+.|.-++.....
T Consensus 224 ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis 277 (747)
T COG3973 224 EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYIS 277 (747)
T ss_pred cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHH
Confidence 33444466778999999999877777765322 2467999999988766544
No 499
>PTZ00062 glutaredoxin; Provisional
Probab=30.56 E-value=2.5e+02 Score=33.19 Aligned_cols=75 Identities=17% Similarity=0.278 Sum_probs=50.1
Q ss_pred HHHHHHHHhhhCCCeEEEEeC------chHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000139 1070 ELAILLRKLKSDGHRALIFTQ------MTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1143 (2062)
Q Consensus 1070 ~L~~LLrkLks~GhKVLIFSQ------~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrA 1143 (2062)
.+...|+++.. .++|+||+. +-..-..+..+|+.+|+.|..+|=....+-|+.+.+.-+...-..|||=..-.
T Consensus 101 ~~~~~v~~li~-~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G~~I 179 (204)
T PTZ00062 101 DTVEKIERLIR-NHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNWPTYPQLYVNGELI 179 (204)
T ss_pred HHHHHHHHHHh-cCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEECCEEE
Confidence 35555555544 589999988 56677788899999999999998877777777665533322224455443334
Q ss_pred cc
Q 000139 1144 GG 1145 (2062)
Q Consensus 1144 GG 1145 (2062)
||
T Consensus 180 GG 181 (204)
T PTZ00062 180 GG 181 (204)
T ss_pred cC
Confidence 44
No 500
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=30.46 E-value=1.1e+02 Score=38.65 Aligned_cols=96 Identities=19% Similarity=0.224 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhcCCCCcEEEEecCC-cHHHHHHHHHHHCCCCeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhc
Q 000139 560 TIAMLAHLACEKGIWGPHLIVVPTS-VMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQD 638 (2062)
Q Consensus 560 aIALLa~L~~~~g~~Gp~LIVvPtS-LL~QW~~Efkkw~P~lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d 638 (2062)
...++.++........|+||.+|.- .+.+...-+++-+|..++...+.....|..+-+ |...+.++++|||- ++.+.
T Consensus 291 ~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~~R~EkV~-~fR~G~~~lLiTTT-ILERG 368 (441)
T COG4098 291 PLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSEDQHRKEKVE-AFRDGKITLLITTT-ILERG 368 (441)
T ss_pred CHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccCccHHHHHH-HHHcCceEEEEEee-hhhcc
Confidence 4566777766666667999999995 677778888888899998888888887776654 45667888988884 22222
Q ss_pred hhhhhccCeeEEEEcCccccCC
Q 000139 639 SKVFKRKKWKYLILDEAHLIKN 660 (2062)
Q Consensus 639 ~~~L~r~~W~lVILDEAH~IKN 660 (2062)
. .| .+.++.|++=-|++-.
T Consensus 369 V-Tf--p~vdV~Vlgaeh~vfT 387 (441)
T COG4098 369 V-TF--PNVDVFVLGAEHRVFT 387 (441)
T ss_pred c-cc--ccceEEEecCCccccc
Confidence 1 12 3468899988777654
Done!